--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1859.01 -1884.63
2 -1857.15 -1882.63
--------------------------------------
TOTAL -1857.70 -1884.06
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.107596 0.000191 0.082229 0.135381 0.106466 1440.40 1470.70 1.000
r(A<->C){all} 0.072685 0.000978 0.020225 0.134386 0.069066 736.64 802.47 1.004
r(A<->G){all} 0.241763 0.002233 0.153562 0.335791 0.240157 656.15 708.68 1.000
r(A<->T){all} 0.031404 0.000264 0.004043 0.063136 0.029129 1014.05 1051.64 1.000
r(C<->G){all} 0.078784 0.001032 0.021943 0.141653 0.075751 477.46 520.40 1.001
r(C<->T){all} 0.381100 0.002832 0.275694 0.480473 0.380228 635.47 743.90 1.002
r(G<->T){all} 0.194265 0.001429 0.122526 0.266972 0.191604 606.32 651.95 1.000
pi(A){all} 0.235871 0.000186 0.210441 0.264507 0.235887 1027.67 1128.84 1.000
pi(C){all} 0.184749 0.000153 0.161905 0.210168 0.184510 919.20 996.61 1.000
pi(G){all} 0.237047 0.000196 0.211339 0.266437 0.236911 1017.46 1041.09 1.001
pi(T){all} 0.342333 0.000236 0.312316 0.372519 0.342701 928.33 1009.91 1.002
alpha{1,2} 0.942695 0.913947 0.000496 2.893835 0.648502 1250.55 1256.61 1.000
alpha{3} 1.376686 1.046723 0.109621 3.503814 1.113900 1189.02 1239.85 1.000
pinvar{all} 0.271966 0.025781 0.000109 0.545554 0.264760 840.70 966.38 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -1784.403454
Model 2: PositiveSelection -1784.403405
Model 7: beta -1784.482120
Model 8: beta&w>1 -1784.383044
Model 2 vs 1 .000098
Model 8 vs 7 .198152
-- Starting log on Thu Nov 17 16:36:45 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/LZW_nsp2_VIPR_ALG4_672096717_9284_10189_1_2012_02_China_Unknown_PEDV.result--
-- Starting log on Thu Nov 17 16:40:24 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/LZW_nsp2_VIPR_ALG4_672096717_9284_10189_1_2012_02_China_Unknown_PEDV.result--
-- Starting log on Fri Nov 18 02:08:20 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/LZW_nsp2_VIPR_ALG4_672096717_9284_10189_1_2012_02_China_Unknown_PEDV.result/gapped_alignment/codeml,LZW_nsp2_VIPR_ALG4_672096717_9284_10189_1_2012_02_China_Unknown_PEDV.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 30 taxa and 906 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C65
Taxon 2 -> C619
Taxon 3 -> C295
Taxon 4 -> C196
Taxon 5 -> C93
Taxon 6 -> C597
Taxon 7 -> C208
Taxon 8 -> C75
Taxon 9 -> C651
Taxon 10 -> C337
Taxon 11 -> C545
Taxon 12 -> C224
Taxon 13 -> C60
Taxon 14 -> C312
Taxon 15 -> C628
Taxon 16 -> C627
Taxon 17 -> C389
Taxon 18 -> C284
Taxon 19 -> C117
Taxon 20 -> C380
Taxon 21 -> C68
Taxon 22 -> C165
Taxon 23 -> C129
Taxon 24 -> C315
Taxon 25 -> C493
Taxon 26 -> C381
Taxon 27 -> C584
Taxon 28 -> C561
Taxon 29 -> C411
Taxon 30 -> C596
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1668737303
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 1334832760
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 1841809723
Seed = 1665734870
Swapseed = 1668737303
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 16 unique site patterns
Division 2 has 15 unique site patterns
Division 3 has 43 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -2788.513961 -- 82.122948
Chain 2 -- -2814.814361 -- 82.122948
Chain 3 -- -2781.158131 -- 82.122948
Chain 4 -- -2778.683982 -- 82.122948
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -2837.972359 -- 82.122948
Chain 2 -- -2825.543691 -- 82.122948
Chain 3 -- -2797.732573 -- 82.122948
Chain 4 -- -2800.972521 -- 82.122948
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-2788.514] (-2814.814) (-2781.158) (-2778.684) * [-2837.972] (-2825.544) (-2797.733) (-2800.973)
1000 -- (-1944.834) [-1922.429] (-1960.054) (-1956.799) * (-2002.907) [-1945.925] (-1960.990) (-1953.945) -- 0:16:39
2000 -- [-1882.828] (-1895.790) (-1885.215) (-1892.474) * (-1906.617) (-1898.807) (-1912.136) [-1894.247] -- 0:16:38
3000 -- (-1876.342) (-1871.709) (-1891.921) [-1884.246] * [-1881.441] (-1904.425) (-1890.748) (-1885.774) -- 0:16:37
4000 -- (-1869.610) [-1867.663] (-1904.761) (-1877.508) * [-1871.197] (-1890.246) (-1875.746) (-1881.552) -- 0:16:36
5000 -- (-1863.131) [-1871.886] (-1887.281) (-1896.035) * (-1877.870) [-1865.460] (-1879.555) (-1866.429) -- 0:16:35
Average standard deviation of split frequencies: 0.086151
6000 -- (-1865.599) [-1880.366] (-1881.866) (-1875.742) * [-1871.080] (-1868.962) (-1871.770) (-1871.882) -- 0:16:34
7000 -- [-1872.942] (-1876.724) (-1887.121) (-1878.519) * (-1866.476) (-1880.686) (-1876.902) [-1865.857] -- 0:16:33
8000 -- (-1875.684) (-1882.790) (-1892.892) [-1864.745] * (-1879.507) [-1857.284] (-1883.061) (-1876.225) -- 0:16:32
9000 -- (-1868.402) [-1875.153] (-1896.506) (-1868.458) * [-1870.406] (-1870.968) (-1871.595) (-1869.165) -- 0:16:31
10000 -- [-1872.804] (-1870.303) (-1875.100) (-1886.648) * (-1870.943) (-1870.267) (-1890.192) [-1864.112] -- 0:16:30
Average standard deviation of split frequencies: 0.092208
11000 -- (-1873.172) (-1870.688) [-1874.019] (-1880.615) * [-1879.944] (-1873.385) (-1887.138) (-1875.410) -- 0:16:29
12000 -- (-1869.801) (-1879.391) [-1875.702] (-1866.754) * (-1878.899) (-1866.111) (-1879.140) [-1864.335] -- 0:16:28
13000 -- (-1877.562) (-1883.669) [-1861.605] (-1878.766) * (-1875.119) (-1867.771) [-1870.037] (-1874.367) -- 0:16:27
14000 -- (-1881.434) (-1876.089) (-1880.848) [-1868.342] * (-1876.597) (-1878.124) (-1882.128) [-1874.870] -- 0:16:26
15000 -- [-1869.134] (-1882.976) (-1875.803) (-1881.831) * [-1869.144] (-1886.789) (-1877.205) (-1870.968) -- 0:16:25
Average standard deviation of split frequencies: 0.071816
16000 -- (-1875.261) [-1867.258] (-1877.103) (-1873.795) * [-1871.922] (-1872.596) (-1881.900) (-1867.928) -- 0:15:22
17000 -- (-1878.359) (-1875.839) [-1872.415] (-1874.171) * (-1868.752) (-1875.310) (-1871.946) [-1865.798] -- 0:15:25
18000 -- (-1863.733) (-1872.677) [-1866.558] (-1884.723) * (-1869.293) (-1870.662) (-1877.863) [-1860.197] -- 0:15:27
19000 -- [-1862.011] (-1879.668) (-1866.891) (-1881.023) * (-1879.248) (-1866.981) (-1874.353) [-1876.314] -- 0:15:29
20000 -- [-1868.251] (-1888.981) (-1874.274) (-1878.319) * (-1900.558) (-1866.939) [-1870.864] (-1871.575) -- 0:15:31
Average standard deviation of split frequencies: 0.064356
21000 -- (-1871.561) [-1879.847] (-1876.334) (-1877.182) * (-1880.193) [-1865.923] (-1882.262) (-1875.481) -- 0:15:32
22000 -- (-1866.741) (-1895.050) (-1868.085) [-1858.978] * (-1884.503) [-1864.437] (-1880.204) (-1867.033) -- 0:15:33
23000 -- (-1876.084) (-1880.178) (-1882.061) [-1864.800] * (-1897.569) [-1861.445] (-1863.765) (-1871.682) -- 0:15:34
24000 -- (-1862.224) (-1882.265) [-1872.928] (-1873.645) * (-1906.879) (-1867.901) [-1868.550] (-1877.974) -- 0:15:35
25000 -- (-1872.165) [-1865.073] (-1887.182) (-1873.984) * (-1883.218) [-1869.836] (-1877.654) (-1880.436) -- 0:15:36
Average standard deviation of split frequencies: 0.053310
26000 -- (-1876.201) [-1866.365] (-1873.539) (-1878.137) * (-1876.002) (-1882.193) [-1875.145] (-1876.779) -- 0:15:36
27000 -- (-1874.884) [-1874.421] (-1873.016) (-1873.818) * (-1879.914) (-1874.004) [-1870.451] (-1875.159) -- 0:15:36
28000 -- (-1877.265) [-1870.064] (-1883.909) (-1870.789) * (-1878.867) (-1868.891) (-1871.703) [-1864.395] -- 0:15:37
29000 -- (-1878.387) (-1875.616) (-1878.134) [-1875.514] * (-1882.276) (-1868.064) (-1874.915) [-1855.270] -- 0:15:37
30000 -- (-1877.488) [-1863.098] (-1875.438) (-1880.211) * (-1891.095) (-1879.500) [-1875.366] (-1867.988) -- 0:15:37
Average standard deviation of split frequencies: 0.047679
31000 -- (-1878.034) (-1887.942) (-1877.210) [-1870.255] * (-1884.301) [-1867.156] (-1891.314) (-1862.338) -- 0:15:37
32000 -- [-1871.975] (-1876.001) (-1879.449) (-1877.334) * [-1875.334] (-1885.168) (-1891.768) (-1865.734) -- 0:15:37
33000 -- (-1869.565) [-1872.449] (-1870.915) (-1874.446) * [-1872.416] (-1875.414) (-1875.305) (-1888.100) -- 0:15:37
34000 -- [-1879.251] (-1875.504) (-1889.636) (-1866.659) * [-1864.796] (-1874.031) (-1891.170) (-1873.828) -- 0:15:37
35000 -- (-1866.423) (-1874.671) (-1878.996) [-1868.945] * [-1871.290] (-1874.907) (-1881.937) (-1865.071) -- 0:15:37
Average standard deviation of split frequencies: 0.045189
36000 -- (-1867.891) (-1874.761) (-1871.597) [-1868.299] * (-1867.020) (-1877.164) (-1872.940) [-1853.413] -- 0:15:37
37000 -- [-1878.727] (-1867.358) (-1872.934) (-1867.784) * (-1864.896) [-1867.108] (-1885.676) (-1871.834) -- 0:15:36
38000 -- [-1874.270] (-1878.022) (-1870.130) (-1881.757) * (-1878.146) (-1863.373) (-1891.009) [-1865.798] -- 0:15:36
39000 -- (-1886.961) (-1901.481) [-1870.454] (-1885.282) * (-1885.380) [-1876.157] (-1871.337) (-1874.064) -- 0:15:36
40000 -- (-1863.531) (-1881.405) (-1870.283) [-1877.912] * [-1876.534] (-1864.437) (-1873.733) (-1877.238) -- 0:15:36
Average standard deviation of split frequencies: 0.043529
41000 -- (-1869.889) (-1867.198) (-1876.053) [-1871.068] * (-1892.191) [-1868.754] (-1879.309) (-1887.242) -- 0:15:35
42000 -- [-1870.756] (-1869.095) (-1880.609) (-1880.926) * (-1889.014) (-1864.036) [-1866.988] (-1866.180) -- 0:15:35
43000 -- (-1870.001) [-1862.388] (-1870.324) (-1870.603) * (-1888.162) (-1880.247) (-1863.157) [-1867.299] -- 0:15:34
44000 -- (-1883.227) (-1868.688) (-1868.460) [-1863.579] * (-1871.029) (-1884.819) (-1865.561) [-1862.082] -- 0:15:34
45000 -- (-1884.690) (-1880.557) [-1863.726] (-1873.938) * (-1881.735) (-1890.400) [-1861.960] (-1878.757) -- 0:15:33
Average standard deviation of split frequencies: 0.039894
46000 -- (-1880.380) (-1887.583) [-1864.761] (-1857.426) * (-1866.996) (-1875.529) [-1856.878] (-1886.689) -- 0:15:33
47000 -- (-1883.360) (-1872.054) [-1866.187] (-1874.023) * (-1872.323) (-1862.720) (-1866.753) [-1869.776] -- 0:15:32
48000 -- (-1873.753) (-1877.049) (-1873.031) [-1859.626] * (-1874.565) (-1877.184) (-1883.177) [-1862.661] -- 0:15:32
49000 -- [-1871.689] (-1895.527) (-1871.155) (-1864.990) * (-1881.778) (-1871.384) (-1870.012) [-1863.037] -- 0:15:31
50000 -- (-1878.882) (-1877.117) [-1865.876] (-1865.506) * (-1886.276) [-1870.790] (-1858.811) (-1874.057) -- 0:15:31
Average standard deviation of split frequencies: 0.039821
51000 -- (-1869.991) (-1867.527) (-1877.277) [-1874.064] * (-1890.367) (-1873.668) [-1860.533] (-1899.675) -- 0:15:30
52000 -- (-1876.427) (-1867.776) (-1859.450) [-1870.528] * (-1877.004) [-1867.282] (-1874.594) (-1881.174) -- 0:15:29
53000 -- (-1879.743) (-1865.351) (-1885.040) [-1870.167] * (-1881.254) [-1871.835] (-1879.805) (-1879.105) -- 0:15:29
54000 -- (-1882.472) (-1869.078) [-1875.992] (-1859.963) * (-1866.573) (-1904.053) (-1874.940) [-1880.370] -- 0:15:28
55000 -- (-1883.418) (-1872.157) [-1864.813] (-1870.560) * (-1872.417) (-1887.117) (-1881.620) [-1867.379] -- 0:15:10
Average standard deviation of split frequencies: 0.037108
56000 -- (-1884.528) [-1869.047] (-1859.081) (-1872.376) * (-1883.259) (-1872.182) [-1868.598] (-1864.537) -- 0:15:10
57000 -- (-1881.078) (-1877.387) (-1871.516) [-1868.559] * (-1883.600) (-1861.720) (-1880.702) [-1864.873] -- 0:15:09
58000 -- (-1877.158) (-1878.004) [-1869.135] (-1874.315) * [-1869.441] (-1873.216) (-1872.450) (-1863.484) -- 0:15:09
59000 -- (-1869.922) (-1880.621) (-1862.587) [-1855.735] * (-1867.271) (-1867.253) (-1876.057) [-1864.477] -- 0:15:09
60000 -- [-1862.589] (-1871.261) (-1870.748) (-1867.508) * (-1872.270) [-1870.933] (-1871.982) (-1861.776) -- 0:15:08
Average standard deviation of split frequencies: 0.031237
61000 -- (-1873.324) (-1879.775) (-1874.726) [-1872.269] * (-1872.030) (-1869.609) (-1873.885) [-1857.182] -- 0:15:08
62000 -- (-1859.202) (-1882.201) (-1875.814) [-1881.650] * (-1863.709) (-1883.781) [-1868.670] (-1863.127) -- 0:15:07
63000 -- (-1865.869) (-1876.198) (-1877.283) [-1870.785] * (-1882.860) [-1870.530] (-1889.934) (-1871.885) -- 0:15:07
64000 -- [-1866.777] (-1879.480) (-1873.303) (-1872.370) * [-1867.194] (-1873.211) (-1877.610) (-1880.736) -- 0:15:06
65000 -- [-1864.899] (-1868.712) (-1871.785) (-1867.801) * (-1868.835) (-1875.919) [-1876.388] (-1865.900) -- 0:15:06
Average standard deviation of split frequencies: 0.031042
66000 -- (-1869.385) (-1877.758) (-1881.666) [-1868.155] * (-1889.007) [-1870.826] (-1871.659) (-1881.571) -- 0:15:05
67000 -- [-1868.563] (-1880.801) (-1883.366) (-1873.084) * (-1891.257) (-1875.751) [-1872.379] (-1892.304) -- 0:15:05
68000 -- [-1871.991] (-1888.028) (-1874.872) (-1880.972) * (-1879.347) (-1870.055) (-1879.255) [-1865.289] -- 0:15:04
69000 -- (-1882.735) (-1879.776) [-1866.841] (-1869.302) * (-1888.744) (-1899.475) (-1877.512) [-1884.106] -- 0:15:04
70000 -- (-1908.252) (-1895.869) [-1867.129] (-1861.745) * [-1873.425] (-1890.745) (-1874.877) (-1881.810) -- 0:15:03
Average standard deviation of split frequencies: 0.034270
71000 -- (-1885.581) (-1881.448) (-1883.565) [-1857.816] * (-1870.215) [-1876.008] (-1878.302) (-1873.604) -- 0:15:02
72000 -- (-1888.726) (-1877.461) [-1871.846] (-1865.530) * (-1868.873) (-1883.644) [-1862.471] (-1878.237) -- 0:15:02
73000 -- [-1880.018] (-1885.044) (-1872.717) (-1871.822) * [-1870.205] (-1894.820) (-1866.900) (-1886.282) -- 0:15:01
74000 -- (-1892.436) (-1878.036) (-1874.009) [-1865.807] * (-1882.222) (-1871.770) [-1871.868] (-1874.690) -- 0:15:00
75000 -- (-1899.609) (-1877.367) [-1874.392] (-1858.955) * (-1867.870) (-1872.189) [-1868.009] (-1865.967) -- 0:15:00
Average standard deviation of split frequencies: 0.029029
76000 -- (-1887.585) (-1877.392) (-1871.967) [-1875.263] * (-1868.416) (-1894.332) (-1868.279) [-1877.299] -- 0:14:59
77000 -- [-1871.366] (-1886.019) (-1873.640) (-1877.014) * (-1871.518) [-1873.935] (-1872.820) (-1890.062) -- 0:14:59
78000 -- (-1869.831) (-1898.777) (-1870.215) [-1881.082] * [-1872.438] (-1870.743) (-1881.353) (-1887.474) -- 0:14:58
79000 -- (-1883.457) [-1862.020] (-1869.620) (-1868.946) * (-1872.213) (-1870.495) [-1877.424] (-1873.155) -- 0:14:57
80000 -- (-1883.185) (-1877.181) [-1884.009] (-1870.021) * (-1865.520) [-1872.324] (-1877.480) (-1869.421) -- 0:14:57
Average standard deviation of split frequencies: 0.028752
81000 -- (-1905.197) (-1864.888) [-1868.164] (-1871.418) * (-1867.408) [-1874.306] (-1868.462) (-1878.709) -- 0:14:56
82000 -- (-1880.031) (-1877.105) [-1865.495] (-1869.267) * (-1878.949) (-1882.273) [-1883.529] (-1880.844) -- 0:14:55
83000 -- (-1886.086) (-1864.708) (-1861.752) [-1869.659] * (-1876.939) (-1877.091) (-1897.984) [-1875.449] -- 0:14:54
84000 -- (-1879.556) (-1867.692) [-1864.134] (-1871.083) * (-1875.423) [-1864.558] (-1898.255) (-1867.491) -- 0:14:54
85000 -- (-1909.180) (-1865.260) [-1855.373] (-1877.052) * (-1871.537) [-1857.841] (-1890.168) (-1866.555) -- 0:14:53
Average standard deviation of split frequencies: 0.028804
86000 -- [-1866.888] (-1866.123) (-1863.373) (-1862.217) * [-1866.434] (-1869.900) (-1867.700) (-1879.480) -- 0:14:52
87000 -- (-1865.220) [-1868.258] (-1873.959) (-1877.436) * [-1878.157] (-1867.543) (-1876.102) (-1865.940) -- 0:14:52
88000 -- [-1876.230] (-1868.058) (-1890.608) (-1888.890) * (-1878.563) (-1877.939) (-1875.482) [-1873.747] -- 0:14:51
89000 -- (-1870.550) (-1872.424) (-1897.513) [-1874.375] * [-1869.097] (-1888.555) (-1868.217) (-1877.703) -- 0:14:50
90000 -- [-1870.868] (-1897.776) (-1888.353) (-1889.624) * [-1872.384] (-1875.653) (-1867.205) (-1882.062) -- 0:14:49
Average standard deviation of split frequencies: 0.025269
91000 -- [-1860.965] (-1891.724) (-1895.856) (-1870.148) * (-1868.864) (-1873.371) [-1871.719] (-1878.972) -- 0:14:49
92000 -- (-1872.606) [-1873.515] (-1896.422) (-1874.942) * (-1889.626) (-1874.249) (-1877.612) [-1872.742] -- 0:14:48
93000 -- (-1871.089) (-1879.705) (-1903.153) [-1864.552] * (-1860.884) (-1884.103) (-1885.689) [-1858.992] -- 0:14:47
94000 -- (-1879.942) [-1874.070] (-1889.346) (-1864.098) * (-1872.229) (-1864.481) (-1880.780) [-1865.822] -- 0:14:46
95000 -- [-1870.408] (-1876.710) (-1897.658) (-1865.595) * (-1887.983) (-1867.464) [-1866.967] (-1879.744) -- 0:14:45
Average standard deviation of split frequencies: 0.025043
96000 -- [-1864.313] (-1882.824) (-1867.528) (-1869.471) * (-1874.037) (-1881.012) (-1876.327) [-1869.115] -- 0:14:35
97000 -- (-1866.509) (-1890.097) (-1882.417) [-1868.859] * (-1885.195) (-1877.308) (-1879.540) [-1868.494] -- 0:14:35
98000 -- (-1875.330) (-1879.864) (-1878.069) [-1859.748] * [-1869.164] (-1868.470) (-1883.787) (-1873.210) -- 0:14:34
99000 -- (-1864.794) (-1895.076) (-1872.014) [-1873.009] * [-1871.848] (-1872.001) (-1866.908) (-1882.577) -- 0:14:33
100000 -- [-1865.777] (-1893.964) (-1869.310) (-1872.487) * [-1864.270] (-1892.328) (-1877.115) (-1865.038) -- 0:14:24
Average standard deviation of split frequencies: 0.026186
101000 -- (-1878.940) (-1881.570) [-1871.465] (-1882.849) * (-1874.535) (-1892.044) (-1888.006) [-1865.962] -- 0:14:23
102000 -- [-1868.874] (-1885.754) (-1868.826) (-1880.518) * [-1868.368] (-1866.498) (-1871.870) (-1869.395) -- 0:14:22
103000 -- (-1876.160) (-1874.034) [-1871.571] (-1878.196) * [-1865.817] (-1888.026) (-1870.372) (-1866.486) -- 0:14:13
104000 -- (-1882.485) (-1885.385) (-1866.954) [-1873.225] * [-1861.801] (-1865.836) (-1872.066) (-1872.973) -- 0:14:12
105000 -- (-1876.975) (-1881.318) (-1883.349) [-1868.855] * (-1872.828) (-1878.313) (-1867.927) [-1863.420] -- 0:14:12
Average standard deviation of split frequencies: 0.026048
106000 -- [-1888.528] (-1871.167) (-1876.035) (-1877.463) * (-1879.925) (-1881.637) (-1890.280) [-1870.295] -- 0:14:03
107000 -- (-1869.345) [-1864.758] (-1874.543) (-1890.925) * (-1890.123) (-1863.901) (-1878.840) [-1873.700] -- 0:14:02
108000 -- (-1879.482) [-1867.909] (-1868.933) (-1893.148) * (-1887.824) (-1879.253) [-1866.162] (-1879.515) -- 0:14:02
109000 -- (-1878.774) (-1867.045) [-1860.791] (-1896.541) * (-1873.645) [-1879.345] (-1880.990) (-1867.770) -- 0:13:53
110000 -- (-1885.789) [-1869.090] (-1876.704) (-1879.716) * (-1887.131) [-1865.239] (-1870.500) (-1870.896) -- 0:13:53
Average standard deviation of split frequencies: 0.025471
111000 -- (-1890.032) (-1882.035) [-1877.990] (-1880.410) * (-1888.858) [-1868.406] (-1874.846) (-1864.548) -- 0:13:44
112000 -- (-1883.788) [-1867.995] (-1878.641) (-1895.109) * [-1870.382] (-1863.463) (-1869.676) (-1876.498) -- 0:13:44
113000 -- (-1864.137) (-1881.993) [-1861.355] (-1883.728) * [-1861.248] (-1881.476) (-1882.054) (-1880.579) -- 0:13:44
114000 -- (-1867.542) (-1888.783) (-1882.923) [-1868.365] * (-1889.693) (-1862.620) [-1861.881] (-1887.463) -- 0:13:36
115000 -- (-1872.717) (-1878.578) (-1879.695) [-1860.019] * (-1874.312) [-1857.990] (-1865.282) (-1881.634) -- 0:13:35
Average standard deviation of split frequencies: 0.025461
116000 -- (-1867.666) [-1868.427] (-1888.288) (-1876.329) * (-1896.502) [-1873.049] (-1872.998) (-1869.069) -- 0:13:35
117000 -- (-1868.104) (-1877.411) [-1865.463] (-1869.184) * (-1874.846) (-1880.169) [-1866.565] (-1876.168) -- 0:13:27
118000 -- [-1862.588] (-1873.031) (-1871.754) (-1877.660) * (-1873.054) (-1881.815) [-1868.606] (-1883.140) -- 0:13:27
119000 -- [-1864.967] (-1874.384) (-1857.105) (-1884.223) * [-1873.443] (-1882.091) (-1868.543) (-1870.245) -- 0:13:26
120000 -- (-1884.315) (-1885.103) (-1872.708) [-1882.896] * (-1880.490) (-1860.239) (-1874.558) [-1880.009] -- 0:13:19
Average standard deviation of split frequencies: 0.023998
121000 -- (-1859.584) [-1872.194] (-1880.087) (-1877.082) * [-1871.847] (-1864.101) (-1881.026) (-1873.260) -- 0:13:19
122000 -- (-1892.494) (-1871.586) [-1870.036] (-1865.775) * (-1881.030) (-1870.113) (-1884.777) [-1869.069] -- 0:13:11
123000 -- (-1876.803) (-1873.118) (-1864.248) [-1864.356] * (-1871.595) (-1877.756) (-1874.165) [-1869.346] -- 0:13:11
124000 -- (-1879.783) (-1866.873) (-1873.992) [-1867.685] * (-1879.699) (-1867.338) (-1863.903) [-1867.660] -- 0:13:11
125000 -- (-1888.027) [-1867.373] (-1873.626) (-1872.677) * (-1884.223) (-1865.610) (-1887.883) [-1874.977] -- 0:13:04
Average standard deviation of split frequencies: 0.023944
126000 -- [-1869.276] (-1867.291) (-1872.910) (-1876.078) * (-1881.793) [-1867.909] (-1878.158) (-1879.558) -- 0:13:03
127000 -- [-1861.675] (-1881.414) (-1892.015) (-1883.958) * (-1862.116) (-1872.860) [-1864.865] (-1879.011) -- 0:13:03
128000 -- [-1860.167] (-1888.688) (-1869.819) (-1866.210) * [-1876.829] (-1892.220) (-1868.452) (-1886.910) -- 0:12:56
129000 -- (-1869.489) (-1877.930) (-1878.625) [-1864.209] * (-1866.972) (-1886.772) [-1869.012] (-1875.874) -- 0:12:56
130000 -- (-1877.791) (-1888.093) (-1863.948) [-1865.557] * (-1870.769) (-1879.634) (-1878.738) [-1881.332] -- 0:12:56
Average standard deviation of split frequencies: 0.024821
131000 -- (-1894.604) [-1871.072] (-1873.212) (-1867.689) * (-1867.096) (-1882.167) [-1872.394] (-1884.980) -- 0:12:49
132000 -- (-1868.925) [-1870.520] (-1864.963) (-1872.483) * (-1869.514) (-1873.297) (-1862.375) [-1878.308] -- 0:12:49
133000 -- (-1870.476) [-1878.040] (-1864.642) (-1890.482) * (-1883.343) (-1886.300) [-1865.240] (-1872.433) -- 0:12:42
134000 -- (-1868.404) (-1874.058) [-1875.357] (-1886.644) * (-1872.160) (-1864.673) [-1864.420] (-1870.360) -- 0:12:42
135000 -- [-1864.185] (-1871.769) (-1895.223) (-1874.635) * (-1880.454) [-1866.256] (-1861.669) (-1875.869) -- 0:12:42
Average standard deviation of split frequencies: 0.024122
136000 -- [-1855.178] (-1880.819) (-1886.443) (-1886.159) * (-1861.774) (-1857.971) (-1863.648) [-1872.987] -- 0:12:36
137000 -- (-1865.303) (-1867.894) (-1871.535) [-1879.501] * (-1869.473) [-1868.675] (-1875.767) (-1866.346) -- 0:12:35
138000 -- [-1862.812] (-1862.512) (-1875.430) (-1883.244) * (-1873.133) (-1878.424) [-1861.199] (-1898.468) -- 0:12:35
139000 -- [-1869.421] (-1867.782) (-1883.905) (-1886.376) * (-1875.896) [-1866.211] (-1872.964) (-1874.799) -- 0:12:29
140000 -- [-1869.758] (-1889.913) (-1874.690) (-1877.499) * (-1874.402) (-1884.992) [-1867.404] (-1875.923) -- 0:12:29
Average standard deviation of split frequencies: 0.022900
141000 -- (-1881.601) [-1866.771] (-1875.097) (-1883.499) * [-1866.412] (-1877.309) (-1891.551) (-1869.489) -- 0:12:29
142000 -- (-1890.095) [-1866.899] (-1874.668) (-1893.831) * [-1868.323] (-1877.605) (-1883.766) (-1875.505) -- 0:12:23
143000 -- (-1873.665) [-1867.534] (-1865.859) (-1886.977) * (-1862.119) (-1883.810) (-1895.899) [-1868.018] -- 0:12:23
144000 -- [-1864.347] (-1890.110) (-1868.548) (-1882.155) * (-1878.117) (-1887.043) (-1879.783) [-1860.474] -- 0:12:23
145000 -- (-1877.774) (-1883.027) (-1876.543) [-1872.191] * (-1873.672) [-1870.337] (-1886.106) (-1867.100) -- 0:12:17
Average standard deviation of split frequencies: 0.021943
146000 -- (-1871.682) (-1877.290) (-1877.781) [-1862.974] * (-1863.101) (-1887.071) (-1891.186) [-1867.317] -- 0:12:17
147000 -- [-1860.293] (-1878.713) (-1911.488) (-1880.588) * (-1878.164) (-1893.138) (-1868.213) [-1864.581] -- 0:12:11
148000 -- [-1868.654] (-1870.660) (-1900.253) (-1866.096) * (-1889.957) (-1868.240) [-1873.070] (-1870.623) -- 0:12:11
149000 -- [-1867.052] (-1866.805) (-1875.756) (-1874.199) * [-1889.007] (-1873.022) (-1881.390) (-1872.237) -- 0:12:11
150000 -- (-1861.936) (-1870.240) [-1865.966] (-1884.199) * (-1871.515) (-1884.670) [-1860.213] (-1885.423) -- 0:12:05
Average standard deviation of split frequencies: 0.020688
151000 -- (-1882.685) (-1863.092) (-1883.258) [-1863.015] * (-1893.361) (-1876.303) (-1873.508) [-1866.145] -- 0:12:05
152000 -- (-1879.442) (-1873.643) [-1859.895] (-1876.653) * (-1875.072) (-1877.221) (-1870.652) [-1867.526] -- 0:12:05
153000 -- (-1887.916) (-1868.462) (-1860.102) [-1861.624] * [-1863.854] (-1890.038) (-1894.131) (-1873.251) -- 0:11:59
154000 -- (-1875.521) (-1865.843) (-1863.679) [-1868.033] * (-1873.692) (-1885.099) (-1886.577) [-1872.440] -- 0:11:59
155000 -- (-1878.649) (-1874.288) [-1866.640] (-1874.164) * [-1864.325] (-1878.493) (-1879.067) (-1884.095) -- 0:11:59
Average standard deviation of split frequencies: 0.021276
156000 -- (-1884.165) [-1870.405] (-1869.902) (-1886.579) * (-1883.828) (-1877.536) (-1871.130) [-1866.804] -- 0:11:54
157000 -- (-1872.454) [-1861.633] (-1873.589) (-1890.423) * (-1882.721) (-1884.045) (-1883.855) [-1873.943] -- 0:11:54
158000 -- (-1874.220) (-1867.858) (-1875.887) [-1871.478] * (-1883.760) (-1885.174) (-1886.171) [-1862.470] -- 0:11:54
159000 -- [-1871.135] (-1880.427) (-1872.308) (-1866.555) * (-1909.459) [-1863.488] (-1877.456) (-1872.214) -- 0:11:48
160000 -- (-1871.116) (-1884.564) (-1894.285) [-1863.741] * (-1900.488) [-1860.070] (-1880.213) (-1866.695) -- 0:11:48
Average standard deviation of split frequencies: 0.020958
161000 -- (-1861.740) (-1866.714) (-1893.444) [-1869.305] * (-1889.994) (-1870.001) [-1876.800] (-1884.874) -- 0:11:48
162000 -- (-1866.848) (-1878.362) (-1880.232) [-1877.920] * (-1882.982) [-1870.365] (-1877.307) (-1875.671) -- 0:11:43
163000 -- (-1880.128) (-1873.673) [-1862.355] (-1878.273) * (-1875.295) [-1874.346] (-1880.263) (-1876.139) -- 0:11:43
164000 -- (-1876.442) (-1868.734) (-1873.257) [-1872.180] * (-1878.152) [-1864.829] (-1877.613) (-1879.524) -- 0:11:43
165000 -- [-1871.097] (-1866.006) (-1876.561) (-1876.517) * [-1871.520] (-1880.664) (-1886.870) (-1883.964) -- 0:11:38
Average standard deviation of split frequencies: 0.020748
166000 -- [-1872.212] (-1872.726) (-1883.806) (-1875.154) * (-1876.939) [-1868.236] (-1875.675) (-1888.775) -- 0:11:38
167000 -- (-1879.677) (-1879.430) (-1879.631) [-1854.970] * [-1869.761] (-1874.052) (-1881.358) (-1879.632) -- 0:11:33
168000 -- (-1895.851) (-1876.520) (-1877.628) [-1868.176] * (-1873.040) (-1859.887) [-1865.569] (-1891.054) -- 0:11:33
169000 -- (-1882.063) (-1884.329) (-1885.284) [-1861.627] * [-1862.609] (-1875.656) (-1877.579) (-1877.354) -- 0:11:33
170000 -- [-1877.849] (-1887.909) (-1875.083) (-1878.275) * (-1883.082) (-1876.475) (-1873.450) [-1871.068] -- 0:11:28
Average standard deviation of split frequencies: 0.019504
171000 -- (-1868.618) (-1891.816) [-1863.388] (-1873.174) * (-1871.695) (-1880.531) (-1880.953) [-1877.918] -- 0:11:28
172000 -- [-1865.928] (-1880.064) (-1872.938) (-1867.156) * [-1861.647] (-1893.132) (-1882.934) (-1874.315) -- 0:11:28
173000 -- (-1865.851) (-1869.800) (-1873.597) [-1868.319] * [-1865.938] (-1878.260) (-1868.360) (-1879.369) -- 0:11:23
174000 -- (-1882.906) [-1856.322] (-1900.742) (-1864.770) * [-1876.707] (-1874.739) (-1883.585) (-1871.342) -- 0:11:23
175000 -- (-1884.194) [-1863.908] (-1896.688) (-1865.171) * (-1865.675) (-1880.611) [-1879.353] (-1883.740) -- 0:11:23
Average standard deviation of split frequencies: 0.018202
176000 -- (-1882.972) [-1867.004] (-1882.287) (-1863.769) * [-1871.317] (-1880.914) (-1869.534) (-1876.457) -- 0:11:18
177000 -- (-1867.786) (-1877.619) (-1887.979) [-1867.762] * [-1861.581] (-1880.070) (-1872.528) (-1904.198) -- 0:11:18
178000 -- (-1877.394) (-1866.546) (-1897.873) [-1885.728] * [-1859.792] (-1875.210) (-1874.086) (-1892.612) -- 0:11:18
179000 -- [-1872.787] (-1883.914) (-1884.262) (-1878.667) * [-1871.325] (-1877.547) (-1868.228) (-1866.852) -- 0:11:14
180000 -- (-1867.418) [-1877.801] (-1878.763) (-1890.939) * (-1875.983) [-1867.552] (-1868.061) (-1874.975) -- 0:11:14
Average standard deviation of split frequencies: 0.017306
181000 -- (-1882.023) [-1869.379] (-1873.891) (-1887.626) * (-1884.361) [-1860.799] (-1872.484) (-1888.879) -- 0:11:14
182000 -- [-1870.344] (-1884.161) (-1874.191) (-1888.469) * (-1880.613) (-1876.984) (-1881.812) [-1881.731] -- 0:11:14
183000 -- [-1866.937] (-1886.148) (-1880.132) (-1872.864) * (-1871.278) (-1870.545) (-1886.386) [-1874.287] -- 0:11:09
184000 -- (-1884.922) (-1873.732) (-1876.216) [-1870.228] * (-1876.325) [-1860.166] (-1878.091) (-1867.306) -- 0:11:09
185000 -- (-1875.895) [-1863.141] (-1873.261) (-1875.848) * (-1860.891) (-1884.839) (-1876.889) [-1869.311] -- 0:11:14
Average standard deviation of split frequencies: 0.016913
186000 -- (-1876.013) [-1876.026] (-1876.689) (-1881.277) * (-1887.025) (-1877.348) (-1875.474) [-1863.824] -- 0:11:13
187000 -- (-1877.990) (-1882.851) (-1869.922) [-1874.256] * (-1875.830) [-1868.039] (-1879.478) (-1875.529) -- 0:11:13
188000 -- [-1872.175] (-1864.135) (-1872.586) (-1874.518) * (-1871.388) (-1863.938) [-1873.624] (-1881.577) -- 0:11:13
189000 -- [-1877.779] (-1880.244) (-1868.631) (-1876.994) * (-1874.809) [-1871.641] (-1870.993) (-1879.694) -- 0:11:13
190000 -- (-1886.380) (-1861.700) (-1892.352) [-1874.953] * (-1872.885) (-1882.474) (-1878.406) [-1858.084] -- 0:11:13
Average standard deviation of split frequencies: 0.015793
191000 -- (-1878.639) [-1861.705] (-1876.984) (-1898.591) * (-1857.623) (-1876.427) (-1865.648) [-1860.281] -- 0:11:13
192000 -- [-1868.575] (-1869.678) (-1874.805) (-1886.336) * (-1876.093) (-1869.992) [-1863.059] (-1881.776) -- 0:11:13
193000 -- (-1864.064) (-1879.275) [-1863.358] (-1877.956) * (-1883.349) [-1854.205] (-1860.547) (-1880.095) -- 0:11:13
194000 -- (-1871.498) (-1891.638) [-1858.781] (-1881.731) * (-1867.956) (-1877.874) (-1872.755) [-1867.976] -- 0:11:13
195000 -- (-1876.998) (-1866.475) [-1862.561] (-1869.980) * (-1874.516) [-1875.009] (-1885.603) (-1878.276) -- 0:11:12
Average standard deviation of split frequencies: 0.015265
196000 -- (-1880.140) (-1886.903) [-1863.506] (-1879.992) * [-1866.749] (-1886.836) (-1879.390) (-1881.333) -- 0:11:12
197000 -- [-1874.766] (-1884.242) (-1888.804) (-1872.647) * [-1870.477] (-1879.166) (-1876.450) (-1864.852) -- 0:11:12
198000 -- (-1888.540) (-1876.852) [-1871.223] (-1884.621) * (-1870.170) (-1874.767) (-1884.461) [-1864.574] -- 0:11:12
199000 -- (-1866.124) [-1864.158] (-1870.069) (-1887.093) * (-1864.836) (-1885.078) (-1883.601) [-1880.460] -- 0:11:12
200000 -- (-1872.162) [-1857.788] (-1886.059) (-1886.238) * [-1872.346] (-1886.524) (-1875.966) (-1870.675) -- 0:11:12
Average standard deviation of split frequencies: 0.014718
201000 -- [-1860.935] (-1882.036) (-1883.503) (-1882.767) * (-1892.105) (-1887.749) [-1883.274] (-1877.338) -- 0:11:11
202000 -- (-1866.367) (-1887.165) [-1858.343] (-1885.743) * (-1887.321) [-1861.008] (-1873.936) (-1881.213) -- 0:11:11
203000 -- (-1887.094) (-1872.158) (-1882.450) [-1868.520] * (-1878.971) [-1868.286] (-1883.789) (-1879.184) -- 0:11:11
204000 -- (-1893.674) (-1879.924) (-1873.098) [-1864.453] * (-1896.697) (-1875.818) [-1884.207] (-1880.442) -- 0:11:11
205000 -- (-1886.906) (-1887.075) (-1872.591) [-1872.620] * (-1885.228) (-1868.712) [-1864.735] (-1869.430) -- 0:11:10
Average standard deviation of split frequencies: 0.014337
206000 -- (-1868.451) (-1896.173) (-1860.104) [-1868.207] * [-1888.042] (-1875.994) (-1858.209) (-1866.074) -- 0:11:10
207000 -- (-1869.805) (-1881.189) [-1861.565] (-1871.489) * (-1869.092) (-1878.102) [-1864.490] (-1864.515) -- 0:11:10
208000 -- (-1885.198) [-1870.571] (-1882.148) (-1869.285) * (-1879.938) (-1885.693) [-1867.922] (-1871.758) -- 0:11:10
209000 -- (-1886.146) [-1864.041] (-1895.147) (-1876.347) * (-1887.089) (-1869.100) (-1874.794) [-1872.493] -- 0:11:09
210000 -- (-1896.975) [-1867.601] (-1877.904) (-1872.567) * (-1872.619) (-1857.311) [-1863.699] (-1872.701) -- 0:11:09
Average standard deviation of split frequencies: 0.013759
211000 -- (-1881.577) (-1886.270) (-1876.344) [-1865.214] * (-1883.120) (-1872.704) (-1869.077) [-1871.349] -- 0:11:09
212000 -- (-1888.775) (-1872.528) [-1876.763] (-1873.228) * (-1877.054) (-1886.518) (-1876.917) [-1861.845] -- 0:11:09
213000 -- (-1882.449) (-1879.680) [-1875.469] (-1878.030) * (-1864.633) [-1875.460] (-1878.687) (-1863.363) -- 0:11:08
214000 -- (-1889.509) (-1887.352) (-1887.553) [-1879.043] * (-1861.594) [-1869.497] (-1885.052) (-1862.948) -- 0:11:08
215000 -- (-1886.518) [-1870.773] (-1887.548) (-1877.127) * (-1879.744) [-1863.911] (-1883.419) (-1868.267) -- 0:11:08
Average standard deviation of split frequencies: 0.013640
216000 -- (-1876.234) [-1862.445] (-1891.207) (-1870.300) * (-1881.655) [-1862.969] (-1886.292) (-1875.663) -- 0:11:07
217000 -- (-1888.943) [-1869.030] (-1884.272) (-1869.050) * (-1878.027) [-1862.293] (-1860.670) (-1873.234) -- 0:11:07
218000 -- (-1871.100) [-1861.340] (-1883.577) (-1895.222) * (-1868.243) [-1873.855] (-1875.742) (-1879.054) -- 0:11:07
219000 -- (-1878.402) [-1871.152] (-1871.072) (-1879.817) * (-1870.984) [-1863.558] (-1878.938) (-1896.294) -- 0:11:06
220000 -- (-1893.833) [-1871.589] (-1869.435) (-1870.309) * (-1877.199) [-1866.930] (-1866.622) (-1880.056) -- 0:11:06
Average standard deviation of split frequencies: 0.014731
221000 -- (-1885.702) [-1867.316] (-1874.752) (-1871.089) * [-1867.060] (-1866.595) (-1875.933) (-1881.391) -- 0:11:06
222000 -- (-1882.099) [-1878.472] (-1874.326) (-1875.846) * (-1880.596) (-1865.968) [-1865.215] (-1881.794) -- 0:11:05
223000 -- (-1881.345) (-1868.635) (-1883.857) [-1873.893] * [-1869.707] (-1872.363) (-1865.982) (-1881.078) -- 0:11:05
224000 -- (-1886.212) (-1860.733) (-1873.997) [-1867.394] * (-1886.335) (-1877.041) (-1874.269) [-1883.464] -- 0:11:05
225000 -- (-1880.554) [-1870.442] (-1899.227) (-1870.558) * (-1877.138) [-1869.587] (-1861.841) (-1877.089) -- 0:11:04
Average standard deviation of split frequencies: 0.014123
226000 -- (-1877.164) (-1879.425) [-1871.327] (-1870.094) * (-1880.794) [-1868.392] (-1873.304) (-1887.173) -- 0:11:04
227000 -- (-1882.886) [-1873.527] (-1861.351) (-1870.324) * (-1870.063) [-1867.510] (-1880.399) (-1883.565) -- 0:11:04
228000 -- (-1878.649) (-1864.099) (-1884.803) [-1868.142] * (-1871.045) [-1872.561] (-1880.017) (-1869.980) -- 0:11:03
229000 -- (-1896.088) (-1876.871) [-1862.372] (-1871.031) * (-1876.812) [-1861.961] (-1866.434) (-1870.496) -- 0:11:03
230000 -- (-1873.240) [-1857.629] (-1864.608) (-1864.210) * (-1888.226) [-1853.862] (-1862.368) (-1881.349) -- 0:11:02
Average standard deviation of split frequencies: 0.012566
231000 -- (-1875.283) [-1868.844] (-1874.186) (-1870.180) * (-1888.640) [-1859.799] (-1889.289) (-1862.850) -- 0:11:02
232000 -- [-1870.975] (-1873.317) (-1869.710) (-1870.003) * (-1891.867) (-1860.452) [-1864.708] (-1870.995) -- 0:11:02
233000 -- (-1878.550) [-1870.595] (-1880.622) (-1880.061) * (-1886.276) (-1878.143) (-1885.635) [-1870.898] -- 0:11:01
234000 -- (-1874.515) [-1872.146] (-1883.783) (-1872.081) * (-1873.305) (-1870.481) (-1883.018) [-1865.430] -- 0:11:01
235000 -- (-1882.318) [-1859.253] (-1876.417) (-1878.142) * (-1885.658) (-1869.516) [-1860.090] (-1868.932) -- 0:11:00
Average standard deviation of split frequencies: 0.012028
236000 -- [-1874.917] (-1876.111) (-1880.737) (-1880.492) * [-1868.859] (-1876.707) (-1875.563) (-1880.989) -- 0:11:00
237000 -- [-1867.064] (-1870.114) (-1879.044) (-1895.304) * [-1877.008] (-1869.642) (-1881.253) (-1877.593) -- 0:10:59
238000 -- (-1869.218) (-1881.045) [-1877.587] (-1867.991) * (-1904.556) [-1868.795] (-1880.384) (-1879.716) -- 0:10:59
239000 -- [-1870.857] (-1871.749) (-1864.634) (-1877.292) * [-1872.797] (-1866.860) (-1881.581) (-1893.938) -- 0:10:59
240000 -- [-1872.209] (-1868.840) (-1873.208) (-1871.856) * (-1863.156) [-1866.648] (-1882.828) (-1872.679) -- 0:10:55
Average standard deviation of split frequencies: 0.011795
241000 -- (-1889.005) (-1867.768) [-1871.113] (-1879.427) * (-1869.398) (-1883.677) [-1871.155] (-1885.114) -- 0:10:55
242000 -- (-1876.298) [-1872.825] (-1874.462) (-1880.276) * [-1869.378] (-1878.061) (-1880.121) (-1881.344) -- 0:10:54
243000 -- [-1867.702] (-1871.598) (-1857.977) (-1888.334) * (-1874.330) [-1873.122] (-1892.484) (-1886.757) -- 0:10:51
244000 -- (-1874.017) [-1877.040] (-1864.961) (-1867.877) * (-1886.848) [-1871.060] (-1896.929) (-1874.674) -- 0:10:50
245000 -- (-1874.052) (-1879.023) [-1871.227] (-1863.227) * (-1880.000) (-1862.627) (-1874.473) [-1872.236] -- 0:10:50
Average standard deviation of split frequencies: 0.011373
246000 -- (-1894.805) (-1886.633) [-1874.262] (-1868.404) * (-1877.888) (-1883.383) [-1867.582] (-1886.472) -- 0:10:46
247000 -- (-1882.039) (-1880.505) (-1871.018) [-1869.998] * (-1883.174) (-1874.548) [-1865.875] (-1881.953) -- 0:10:46
248000 -- (-1875.179) (-1877.547) (-1872.012) [-1870.265] * (-1874.172) (-1869.268) [-1875.981] (-1876.968) -- 0:10:45
249000 -- (-1874.095) (-1885.857) (-1873.087) [-1868.911] * (-1880.226) [-1866.899] (-1876.761) (-1897.853) -- 0:10:45
250000 -- (-1870.778) (-1870.764) [-1876.103] (-1882.560) * (-1868.020) [-1861.078] (-1878.612) (-1886.109) -- 0:10:45
Average standard deviation of split frequencies: 0.011488
251000 -- (-1869.857) [-1867.910] (-1883.915) (-1884.836) * [-1874.865] (-1871.871) (-1865.660) (-1869.049) -- 0:10:44
252000 -- [-1875.803] (-1880.658) (-1890.823) (-1874.101) * (-1867.165) (-1895.035) [-1864.526] (-1882.990) -- 0:10:44
253000 -- (-1887.897) (-1867.470) (-1873.009) [-1884.782] * (-1872.466) (-1877.365) (-1881.040) [-1870.044] -- 0:10:43
254000 -- (-1882.573) [-1867.726] (-1886.127) (-1887.020) * [-1857.754] (-1894.206) (-1880.836) (-1873.353) -- 0:10:43
255000 -- (-1878.804) [-1866.648] (-1870.472) (-1883.412) * (-1870.200) [-1878.080] (-1890.352) (-1890.599) -- 0:10:42
Average standard deviation of split frequencies: 0.011832
256000 -- (-1887.777) [-1871.886] (-1882.944) (-1876.767) * (-1879.733) [-1857.183] (-1871.813) (-1891.956) -- 0:10:42
257000 -- (-1890.168) [-1863.003] (-1872.542) (-1867.794) * (-1870.457) (-1888.248) (-1874.934) [-1864.405] -- 0:10:41
258000 -- (-1882.622) (-1887.530) [-1856.451] (-1881.433) * [-1867.818] (-1859.709) (-1891.111) (-1865.234) -- 0:10:41
259000 -- (-1879.245) (-1867.873) [-1864.370] (-1876.681) * [-1860.703] (-1875.457) (-1867.303) (-1867.978) -- 0:10:40
260000 -- [-1880.120] (-1884.991) (-1874.183) (-1874.137) * (-1879.595) (-1873.763) [-1881.163] (-1890.288) -- 0:10:40
Average standard deviation of split frequencies: 0.012699
261000 -- [-1875.917] (-1891.465) (-1873.746) (-1873.764) * [-1865.304] (-1868.038) (-1887.334) (-1869.551) -- 0:10:39
262000 -- (-1883.658) (-1884.943) [-1859.678] (-1872.250) * (-1870.412) [-1869.542] (-1876.048) (-1873.532) -- 0:10:39
263000 -- (-1884.335) (-1878.057) [-1879.528] (-1870.196) * (-1878.479) (-1889.553) (-1871.678) [-1867.484] -- 0:10:38
264000 -- (-1888.356) (-1869.897) (-1865.681) [-1867.102] * (-1878.941) (-1876.150) (-1868.707) [-1863.463] -- 0:10:38
265000 -- (-1868.924) [-1872.229] (-1878.322) (-1879.678) * (-1879.478) (-1866.327) [-1869.623] (-1859.539) -- 0:10:37
Average standard deviation of split frequencies: 0.012627
266000 -- (-1863.945) (-1871.477) [-1867.140] (-1868.251) * (-1863.691) (-1873.198) (-1871.055) [-1856.597] -- 0:10:37
267000 -- (-1887.340) [-1858.594] (-1874.388) (-1882.073) * (-1878.206) [-1867.780] (-1874.442) (-1880.154) -- 0:10:36
268000 -- (-1882.550) [-1869.750] (-1864.593) (-1875.640) * [-1880.836] (-1881.601) (-1881.667) (-1895.295) -- 0:10:36
269000 -- [-1867.644] (-1893.627) (-1865.097) (-1870.127) * [-1869.427] (-1877.056) (-1869.966) (-1888.160) -- 0:10:35
270000 -- (-1871.611) (-1875.109) [-1871.463] (-1894.960) * [-1863.502] (-1878.371) (-1866.263) (-1871.290) -- 0:10:35
Average standard deviation of split frequencies: 0.012080
271000 -- (-1873.037) (-1870.540) [-1865.482] (-1891.743) * [-1863.265] (-1880.104) (-1888.880) (-1881.504) -- 0:10:34
272000 -- (-1883.175) (-1886.707) [-1870.585] (-1891.107) * (-1870.100) [-1861.177] (-1887.621) (-1872.991) -- 0:10:34
273000 -- [-1873.681] (-1874.726) (-1871.938) (-1889.493) * (-1881.189) (-1869.209) (-1876.704) [-1875.005] -- 0:10:33
274000 -- (-1864.661) (-1868.781) [-1871.460] (-1890.002) * (-1889.974) (-1865.514) (-1881.032) [-1869.942] -- 0:10:33
275000 -- (-1871.865) (-1869.312) [-1878.269] (-1897.154) * (-1877.728) (-1880.996) (-1884.428) [-1870.576] -- 0:10:32
Average standard deviation of split frequencies: 0.012773
276000 -- (-1876.668) (-1868.827) [-1881.710] (-1876.777) * [-1872.130] (-1868.808) (-1871.073) (-1863.529) -- 0:10:32
277000 -- (-1892.788) (-1866.577) (-1877.087) [-1873.151] * (-1891.161) (-1865.130) (-1863.971) [-1871.959] -- 0:10:29
278000 -- (-1892.003) [-1866.505] (-1883.927) (-1868.448) * (-1893.033) (-1875.721) [-1880.197] (-1873.004) -- 0:10:28
279000 -- (-1875.496) (-1873.724) (-1874.053) [-1864.828] * (-1882.833) (-1865.297) (-1889.675) [-1867.601] -- 0:10:25
280000 -- [-1874.096] (-1872.230) (-1862.944) (-1882.439) * (-1872.531) (-1867.230) [-1884.413] (-1865.091) -- 0:10:24
Average standard deviation of split frequencies: 0.012842
281000 -- (-1881.841) (-1871.656) [-1867.935] (-1897.231) * [-1872.945] (-1861.445) (-1898.285) (-1875.997) -- 0:10:24
282000 -- (-1873.527) [-1863.000] (-1877.176) (-1880.345) * [-1860.720] (-1865.099) (-1890.718) (-1875.856) -- 0:10:21
283000 -- [-1871.113] (-1864.695) (-1872.701) (-1886.285) * (-1873.250) (-1880.256) (-1889.020) [-1881.089] -- 0:10:20
284000 -- (-1883.150) (-1888.083) (-1874.768) [-1867.235] * (-1871.316) [-1868.318] (-1889.560) (-1882.299) -- 0:10:20
285000 -- (-1869.792) (-1887.221) [-1872.355] (-1879.379) * [-1867.661] (-1866.780) (-1875.516) (-1880.247) -- 0:10:17
Average standard deviation of split frequencies: 0.012984
286000 -- (-1878.174) (-1868.933) (-1873.488) [-1879.427] * (-1892.897) [-1869.353] (-1875.445) (-1866.502) -- 0:10:16
287000 -- (-1869.775) (-1864.333) [-1868.694] (-1878.385) * (-1870.533) [-1867.130] (-1878.377) (-1888.258) -- 0:10:16
288000 -- [-1863.087] (-1863.326) (-1870.838) (-1889.100) * (-1869.855) (-1864.130) (-1887.681) [-1873.289] -- 0:10:13
289000 -- (-1881.146) [-1861.901] (-1870.212) (-1869.336) * (-1879.059) (-1863.114) (-1883.631) [-1878.549] -- 0:10:12
290000 -- (-1881.433) (-1877.605) [-1868.607] (-1870.868) * (-1882.348) [-1872.760] (-1895.304) (-1884.249) -- 0:10:09
Average standard deviation of split frequencies: 0.013008
291000 -- (-1862.602) (-1867.354) [-1872.228] (-1871.883) * (-1887.878) [-1855.201] (-1872.601) (-1878.967) -- 0:10:09
292000 -- (-1884.111) [-1867.570] (-1872.497) (-1876.762) * (-1883.658) (-1865.741) (-1871.687) [-1866.137] -- 0:10:08
293000 -- (-1863.067) [-1868.354] (-1873.521) (-1877.643) * (-1870.086) [-1866.984] (-1875.933) (-1877.032) -- 0:10:05
294000 -- (-1861.841) [-1867.426] (-1873.403) (-1872.445) * (-1868.909) (-1867.251) (-1871.373) [-1866.840] -- 0:10:05
295000 -- [-1868.337] (-1868.715) (-1876.416) (-1885.017) * (-1879.484) (-1879.069) (-1873.500) [-1861.027] -- 0:10:04
Average standard deviation of split frequencies: 0.012643
296000 -- (-1867.047) [-1872.714] (-1870.825) (-1889.663) * (-1866.606) (-1878.146) (-1870.796) [-1862.336] -- 0:10:01
297000 -- (-1867.846) (-1870.617) [-1871.464] (-1874.599) * (-1870.030) [-1867.129] (-1877.527) (-1892.964) -- 0:10:01
298000 -- (-1880.678) (-1888.636) [-1865.701] (-1881.835) * (-1881.630) (-1879.843) [-1871.881] (-1866.697) -- 0:10:00
299000 -- [-1866.311] (-1883.775) (-1880.076) (-1875.800) * (-1895.736) [-1871.006] (-1885.373) (-1877.437) -- 0:09:57
300000 -- (-1867.795) (-1873.219) (-1879.284) [-1866.407] * (-1886.133) [-1872.881] (-1878.244) (-1878.724) -- 0:09:57
Average standard deviation of split frequencies: 0.012772
301000 -- (-1866.524) [-1867.701] (-1875.745) (-1879.964) * [-1865.570] (-1887.640) (-1869.444) (-1903.762) -- 0:09:54
302000 -- [-1863.145] (-1869.064) (-1888.004) (-1879.556) * (-1869.110) (-1884.432) [-1871.341] (-1886.098) -- 0:09:53
303000 -- (-1891.411) (-1877.656) (-1890.214) [-1869.871] * (-1864.248) [-1863.311] (-1864.223) (-1882.650) -- 0:09:53
304000 -- (-1878.982) (-1877.681) [-1870.965] (-1876.110) * [-1880.819] (-1881.560) (-1867.617) (-1881.574) -- 0:09:50
305000 -- (-1879.108) [-1869.979] (-1875.552) (-1869.432) * [-1869.063] (-1889.777) (-1861.844) (-1867.861) -- 0:09:50
Average standard deviation of split frequencies: 0.013062
306000 -- [-1879.529] (-1868.801) (-1867.217) (-1874.253) * (-1876.288) (-1882.485) [-1852.398] (-1885.881) -- 0:09:49
307000 -- [-1869.323] (-1870.218) (-1878.413) (-1894.881) * [-1882.004] (-1887.332) (-1870.470) (-1891.735) -- 0:09:46
308000 -- [-1874.183] (-1875.385) (-1877.472) (-1880.570) * (-1895.218) (-1866.322) [-1866.687] (-1890.813) -- 0:09:46
309000 -- (-1873.463) [-1878.407] (-1882.977) (-1871.621) * (-1898.669) (-1866.338) (-1873.831) [-1872.170] -- 0:09:45
310000 -- (-1868.803) [-1883.026] (-1880.178) (-1870.482) * (-1894.691) [-1857.786] (-1871.395) (-1871.028) -- 0:09:43
Average standard deviation of split frequencies: 0.012835
311000 -- (-1891.865) (-1888.840) [-1868.072] (-1866.356) * (-1893.169) [-1859.805] (-1873.259) (-1876.613) -- 0:09:42
312000 -- (-1878.508) (-1894.458) [-1856.850] (-1880.332) * (-1914.066) (-1872.752) [-1865.106] (-1884.114) -- 0:09:39
313000 -- (-1869.883) [-1881.212] (-1874.404) (-1884.487) * (-1892.381) [-1859.543] (-1867.661) (-1868.457) -- 0:09:39
314000 -- [-1865.590] (-1874.463) (-1880.143) (-1879.506) * (-1880.653) (-1868.502) [-1865.784] (-1872.973) -- 0:09:38
315000 -- (-1863.195) (-1865.225) (-1867.642) [-1867.845] * (-1870.426) [-1871.184] (-1866.659) (-1893.420) -- 0:09:36
Average standard deviation of split frequencies: 0.013457
316000 -- (-1870.115) (-1884.558) (-1865.146) [-1868.052] * (-1877.274) [-1875.217] (-1880.808) (-1880.067) -- 0:09:35
317000 -- [-1876.376] (-1872.829) (-1872.013) (-1870.791) * (-1885.399) [-1862.438] (-1869.789) (-1887.351) -- 0:09:35
318000 -- [-1871.763] (-1870.567) (-1866.899) (-1880.705) * (-1888.001) (-1863.746) [-1864.199] (-1874.590) -- 0:09:32
319000 -- [-1865.813] (-1873.211) (-1861.437) (-1887.993) * (-1876.651) [-1869.605] (-1865.261) (-1876.955) -- 0:09:32
320000 -- (-1881.239) (-1876.095) [-1864.247] (-1915.369) * (-1881.929) (-1881.823) (-1876.199) [-1869.581] -- 0:09:31
Average standard deviation of split frequencies: 0.013731
321000 -- (-1866.970) (-1875.332) [-1866.814] (-1884.277) * (-1873.975) [-1874.498] (-1881.765) (-1892.253) -- 0:09:29
322000 -- (-1893.163) (-1865.412) [-1863.099] (-1875.167) * [-1874.091] (-1865.278) (-1884.497) (-1871.947) -- 0:09:28
323000 -- (-1881.060) (-1866.865) [-1866.691] (-1870.022) * [-1866.283] (-1871.132) (-1878.203) (-1881.462) -- 0:09:25
324000 -- [-1887.334] (-1896.371) (-1876.881) (-1880.388) * [-1858.392] (-1869.843) (-1875.878) (-1886.046) -- 0:09:25
325000 -- (-1889.167) (-1877.027) [-1871.196] (-1877.548) * (-1877.441) [-1866.018] (-1880.602) (-1873.447) -- 0:09:24
Average standard deviation of split frequencies: 0.013797
326000 -- (-1885.805) (-1895.882) (-1879.152) [-1881.629] * [-1869.810] (-1866.864) (-1895.023) (-1881.962) -- 0:09:22
327000 -- [-1866.195] (-1867.152) (-1873.290) (-1885.936) * [-1871.160] (-1869.616) (-1898.271) (-1899.081) -- 0:09:21
328000 -- (-1882.968) [-1867.527] (-1866.666) (-1886.845) * (-1881.446) (-1883.803) (-1880.347) [-1879.404] -- 0:09:21
329000 -- (-1889.420) [-1874.854] (-1870.457) (-1871.972) * (-1869.387) (-1870.338) (-1873.009) [-1872.751] -- 0:09:18
330000 -- (-1874.853) (-1883.421) [-1867.070] (-1877.812) * (-1875.988) (-1885.032) (-1865.703) [-1871.247] -- 0:09:18
Average standard deviation of split frequencies: 0.013151
331000 -- (-1874.576) (-1883.911) (-1869.735) [-1872.829] * (-1881.234) (-1890.058) [-1868.706] (-1859.668) -- 0:09:17
332000 -- (-1869.154) (-1878.554) (-1871.883) [-1868.724] * (-1875.374) (-1890.751) [-1872.288] (-1868.051) -- 0:09:15
333000 -- [-1869.811] (-1876.931) (-1892.140) (-1880.182) * (-1871.492) (-1898.324) [-1868.695] (-1869.443) -- 0:09:14
334000 -- [-1871.611] (-1875.319) (-1874.939) (-1874.570) * (-1866.936) (-1888.270) (-1863.731) [-1860.929] -- 0:09:12
335000 -- (-1870.331) (-1867.079) [-1862.095] (-1874.659) * [-1863.116] (-1889.575) (-1866.640) (-1873.793) -- 0:09:11
Average standard deviation of split frequencies: 0.011854
336000 -- (-1864.686) [-1868.923] (-1889.603) (-1873.188) * [-1868.489] (-1893.870) (-1880.580) (-1868.347) -- 0:09:11
337000 -- (-1867.290) (-1879.267) (-1884.950) [-1862.774] * (-1872.634) [-1875.532] (-1872.599) (-1872.353) -- 0:09:08
338000 -- (-1874.317) (-1877.840) (-1878.323) [-1864.014] * (-1880.979) [-1886.201] (-1880.369) (-1870.264) -- 0:09:08
339000 -- (-1877.881) [-1862.597] (-1892.686) (-1882.394) * (-1867.966) (-1891.791) (-1894.263) [-1877.062] -- 0:09:07
340000 -- (-1886.644) (-1873.054) (-1893.290) [-1878.295] * (-1878.181) (-1868.795) (-1904.072) [-1866.210] -- 0:09:05
Average standard deviation of split frequencies: 0.011296
341000 -- (-1886.882) (-1872.411) (-1876.040) [-1873.032] * [-1877.931] (-1876.683) (-1873.884) (-1878.038) -- 0:09:04
342000 -- (-1875.238) (-1882.597) (-1860.275) [-1869.447] * (-1876.739) (-1879.335) (-1890.034) [-1878.665] -- 0:09:04
343000 -- (-1878.800) (-1881.719) (-1870.055) [-1857.806] * [-1867.355] (-1871.254) (-1887.119) (-1878.836) -- 0:09:02
344000 -- (-1879.308) (-1880.796) [-1868.918] (-1877.307) * (-1866.280) [-1866.541] (-1882.457) (-1863.835) -- 0:09:01
345000 -- (-1871.903) [-1874.500] (-1874.143) (-1875.161) * (-1871.157) [-1866.586] (-1888.085) (-1888.771) -- 0:08:59
Average standard deviation of split frequencies: 0.011344
346000 -- (-1904.557) [-1865.625] (-1882.506) (-1869.095) * [-1872.635] (-1874.480) (-1865.238) (-1887.804) -- 0:08:58
347000 -- (-1885.283) (-1871.807) [-1866.083] (-1890.765) * (-1878.268) (-1870.588) [-1871.737] (-1877.649) -- 0:08:58
348000 -- (-1894.906) (-1868.241) [-1859.407] (-1878.511) * (-1875.293) [-1867.291] (-1877.812) (-1888.980) -- 0:08:55
349000 -- (-1886.200) (-1864.611) [-1866.697] (-1870.649) * (-1877.041) (-1863.051) [-1862.240] (-1877.973) -- 0:08:55
350000 -- [-1871.587] (-1876.814) (-1868.597) (-1866.534) * (-1882.364) [-1868.937] (-1876.632) (-1881.609) -- 0:08:53
Average standard deviation of split frequencies: 0.011035
351000 -- (-1882.014) [-1860.181] (-1875.026) (-1868.829) * (-1885.895) [-1865.218] (-1883.787) (-1881.680) -- 0:08:52
352000 -- (-1879.656) [-1876.278] (-1876.189) (-1873.157) * (-1866.398) [-1865.758] (-1893.086) (-1869.605) -- 0:08:52
353000 -- (-1874.175) (-1868.569) (-1893.344) [-1872.218] * (-1870.625) (-1871.854) (-1876.463) [-1875.067] -- 0:08:49
354000 -- (-1867.012) (-1882.195) (-1880.678) [-1869.771] * (-1873.206) [-1867.377] (-1877.970) (-1870.398) -- 0:08:49
355000 -- (-1862.861) (-1877.153) (-1889.008) [-1871.911] * (-1872.429) (-1871.277) (-1874.964) [-1867.804] -- 0:08:48
Average standard deviation of split frequencies: 0.010945
356000 -- (-1883.423) [-1871.328] (-1881.220) (-1874.043) * (-1869.756) (-1874.011) [-1861.530] (-1884.047) -- 0:08:46
357000 -- (-1888.260) (-1870.388) (-1870.627) [-1870.141] * [-1862.780] (-1869.662) (-1888.017) (-1881.426) -- 0:08:45
358000 -- (-1888.936) [-1873.006] (-1872.979) (-1876.432) * [-1864.330] (-1861.983) (-1878.932) (-1881.411) -- 0:08:43
359000 -- [-1869.023] (-1882.255) (-1878.761) (-1878.326) * [-1868.867] (-1874.217) (-1872.271) (-1897.119) -- 0:08:43
360000 -- (-1879.565) [-1860.329] (-1877.796) (-1874.159) * (-1882.351) [-1862.860] (-1863.449) (-1870.518) -- 0:08:42
Average standard deviation of split frequencies: 0.011219
361000 -- (-1889.925) [-1865.460] (-1876.114) (-1872.712) * [-1858.551] (-1872.525) (-1872.997) (-1863.947) -- 0:08:40
362000 -- (-1894.719) (-1867.248) [-1868.615] (-1888.487) * [-1869.623] (-1867.524) (-1869.936) (-1872.091) -- 0:08:39
363000 -- (-1880.391) (-1868.892) (-1885.160) [-1876.390] * (-1866.780) [-1864.538] (-1868.223) (-1874.660) -- 0:08:39
364000 -- (-1890.975) (-1872.493) [-1869.138] (-1866.720) * [-1861.052] (-1892.672) (-1873.046) (-1865.779) -- 0:08:37
365000 -- (-1881.606) (-1871.499) (-1890.289) [-1863.049] * [-1867.665] (-1890.309) (-1888.132) (-1870.248) -- 0:08:36
Average standard deviation of split frequencies: 0.011136
366000 -- [-1867.321] (-1882.897) (-1877.523) (-1870.881) * (-1866.266) (-1875.976) (-1867.209) [-1871.899] -- 0:08:34
367000 -- (-1872.160) (-1872.503) (-1869.999) [-1879.651] * (-1871.464) (-1868.960) (-1867.736) [-1870.668] -- 0:08:33
368000 -- [-1872.166] (-1879.440) (-1891.564) (-1862.769) * [-1869.602] (-1871.234) (-1894.727) (-1875.912) -- 0:08:33
369000 -- (-1879.326) (-1879.855) [-1874.574] (-1870.786) * (-1892.103) (-1881.602) (-1867.002) [-1867.807] -- 0:08:31
370000 -- (-1873.680) [-1870.463] (-1882.508) (-1877.508) * (-1881.397) (-1885.810) [-1860.916] (-1886.709) -- 0:08:30
Average standard deviation of split frequencies: 0.011155
371000 -- (-1870.567) (-1879.320) [-1866.464] (-1880.077) * (-1881.528) (-1884.325) [-1862.352] (-1874.563) -- 0:08:30
372000 -- (-1867.298) (-1882.759) (-1875.577) [-1862.435] * (-1881.091) (-1880.777) (-1867.404) [-1865.370] -- 0:08:28
373000 -- (-1885.262) (-1884.899) [-1862.830] (-1866.933) * (-1881.596) (-1892.858) (-1877.070) [-1869.430] -- 0:08:27
374000 -- (-1884.700) (-1875.903) (-1876.651) [-1858.217] * (-1874.935) (-1878.103) [-1879.404] (-1875.568) -- 0:08:27
375000 -- (-1876.214) [-1864.024] (-1876.167) (-1866.584) * (-1874.309) [-1881.448] (-1866.339) (-1869.009) -- 0:08:25
Average standard deviation of split frequencies: 0.010849
376000 -- [-1880.134] (-1890.097) (-1872.078) (-1882.047) * [-1870.177] (-1871.197) (-1866.063) (-1870.959) -- 0:08:24
377000 -- (-1878.077) (-1881.206) (-1878.238) [-1866.089] * (-1876.070) (-1867.561) [-1869.266] (-1883.939) -- 0:08:22
378000 -- (-1882.873) (-1884.992) (-1865.937) [-1856.538] * (-1888.497) [-1872.550] (-1881.496) (-1872.358) -- 0:08:21
379000 -- (-1889.560) (-1876.838) (-1872.378) [-1870.739] * (-1881.659) [-1877.822] (-1863.708) (-1872.622) -- 0:08:21
380000 -- (-1879.177) (-1877.399) [-1876.673] (-1866.548) * (-1886.987) (-1866.134) [-1872.323] (-1878.774) -- 0:08:19
Average standard deviation of split frequencies: 0.010500
381000 -- (-1867.474) (-1886.380) [-1861.653] (-1880.476) * (-1884.780) [-1861.326] (-1879.975) (-1879.516) -- 0:08:18
382000 -- (-1878.097) (-1871.089) [-1864.053] (-1870.326) * [-1881.703] (-1872.407) (-1872.712) (-1870.210) -- 0:08:18
383000 -- (-1866.658) [-1868.985] (-1878.043) (-1870.416) * (-1891.510) [-1867.086] (-1867.040) (-1880.094) -- 0:08:16
384000 -- [-1859.034] (-1874.101) (-1875.730) (-1875.524) * (-1875.382) (-1900.208) (-1881.610) [-1870.846] -- 0:08:15
385000 -- (-1871.922) [-1861.618] (-1869.364) (-1886.002) * [-1868.575] (-1900.575) (-1877.691) (-1872.427) -- 0:08:13
Average standard deviation of split frequencies: 0.010457
386000 -- (-1889.195) [-1871.604] (-1886.309) (-1872.718) * [-1869.919] (-1883.003) (-1883.424) (-1875.894) -- 0:08:13
387000 -- (-1875.434) (-1878.044) (-1878.796) [-1872.498] * (-1880.221) (-1873.569) [-1882.669] (-1900.440) -- 0:08:12
388000 -- (-1878.874) (-1885.038) (-1869.588) [-1866.331] * (-1865.797) (-1882.967) [-1877.316] (-1868.172) -- 0:08:10
389000 -- (-1883.519) (-1876.368) (-1897.748) [-1871.612] * [-1865.616] (-1880.777) (-1867.376) (-1868.209) -- 0:08:10
390000 -- (-1884.718) [-1865.251] (-1867.727) (-1877.984) * (-1883.332) [-1876.075] (-1858.984) (-1868.548) -- 0:08:09
Average standard deviation of split frequencies: 0.011111
391000 -- (-1874.100) [-1864.741] (-1878.743) (-1884.346) * (-1884.727) (-1871.316) [-1866.697] (-1882.688) -- 0:08:07
392000 -- [-1866.911] (-1864.806) (-1893.303) (-1881.437) * (-1882.273) (-1873.060) (-1888.422) [-1885.215] -- 0:08:07
393000 -- (-1878.603) [-1874.908] (-1871.386) (-1887.950) * (-1873.840) [-1861.438] (-1863.919) (-1889.883) -- 0:08:06
394000 -- (-1874.920) (-1872.565) [-1867.195] (-1876.574) * (-1893.812) (-1867.222) [-1855.457] (-1866.874) -- 0:08:04
395000 -- (-1872.703) [-1874.100] (-1887.108) (-1877.042) * (-1899.078) (-1873.367) (-1862.810) [-1867.001] -- 0:08:04
Average standard deviation of split frequencies: 0.010228
396000 -- [-1874.085] (-1879.012) (-1886.925) (-1877.389) * (-1893.869) (-1868.813) (-1881.512) [-1868.635] -- 0:08:03
397000 -- (-1876.912) (-1894.474) [-1867.843] (-1875.796) * (-1882.941) [-1862.714] (-1877.067) (-1867.725) -- 0:08:01
398000 -- (-1858.894) (-1901.036) [-1867.701] (-1864.448) * (-1877.021) (-1869.117) [-1863.710] (-1874.645) -- 0:08:00
399000 -- (-1870.786) (-1890.296) (-1880.134) [-1862.029] * (-1884.299) [-1873.123] (-1860.533) (-1881.502) -- 0:07:58
400000 -- [-1868.069] (-1883.932) (-1885.892) (-1871.035) * [-1877.162] (-1883.321) (-1864.628) (-1888.940) -- 0:07:58
Average standard deviation of split frequencies: 0.010541
401000 -- (-1876.886) (-1888.142) [-1870.089] (-1876.102) * (-1863.464) (-1884.877) [-1864.839] (-1870.582) -- 0:07:58
402000 -- (-1875.810) (-1880.139) [-1877.013] (-1884.544) * (-1879.707) (-1878.923) [-1862.919] (-1857.770) -- 0:07:56
403000 -- (-1870.841) (-1887.291) [-1876.100] (-1879.928) * (-1876.483) (-1880.719) [-1868.886] (-1867.219) -- 0:07:55
404000 -- (-1883.056) [-1871.506] (-1870.499) (-1868.552) * (-1874.366) (-1886.273) [-1865.957] (-1872.857) -- 0:07:55
405000 -- (-1887.124) [-1868.553] (-1865.843) (-1869.413) * (-1870.925) [-1871.183] (-1877.944) (-1883.445) -- 0:07:53
Average standard deviation of split frequencies: 0.010813
406000 -- (-1880.401) [-1867.483] (-1873.310) (-1867.339) * (-1891.295) (-1876.116) (-1876.752) [-1877.727] -- 0:07:52
407000 -- (-1884.314) [-1876.922] (-1868.165) (-1867.370) * (-1861.945) (-1884.437) (-1872.166) [-1866.829] -- 0:07:52
408000 -- [-1864.594] (-1872.864) (-1878.344) (-1875.757) * [-1863.374] (-1874.699) (-1903.241) (-1874.839) -- 0:07:50
409000 -- (-1881.104) [-1875.976] (-1870.506) (-1879.741) * (-1864.034) (-1883.399) (-1892.713) [-1870.648] -- 0:07:49
410000 -- [-1868.112] (-1877.902) (-1879.019) (-1886.019) * [-1864.753] (-1870.832) (-1884.476) (-1886.122) -- 0:07:49
Average standard deviation of split frequencies: 0.010522
411000 -- (-1875.035) (-1867.944) [-1869.900] (-1878.602) * (-1873.520) [-1883.190] (-1875.577) (-1875.256) -- 0:07:47
412000 -- (-1877.783) (-1874.835) [-1876.346] (-1887.177) * [-1864.438] (-1876.430) (-1876.726) (-1876.824) -- 0:07:46
413000 -- [-1868.869] (-1873.777) (-1876.661) (-1875.635) * (-1883.063) (-1873.759) [-1873.101] (-1878.357) -- 0:07:44
414000 -- (-1877.264) [-1869.195] (-1868.195) (-1874.742) * (-1872.598) [-1857.424] (-1872.751) (-1883.111) -- 0:07:44
415000 -- (-1874.994) (-1875.179) (-1869.466) [-1870.176] * (-1875.067) (-1863.314) (-1874.390) [-1869.944] -- 0:07:43
Average standard deviation of split frequencies: 0.010529
416000 -- (-1882.652) (-1891.085) (-1879.329) [-1870.699] * (-1870.692) (-1880.449) (-1881.181) [-1860.518] -- 0:07:41
417000 -- (-1890.768) (-1882.316) [-1875.930] (-1861.809) * (-1871.783) (-1880.198) (-1878.418) [-1876.651] -- 0:07:41
418000 -- (-1873.364) (-1878.832) [-1868.098] (-1872.307) * (-1880.835) (-1863.595) (-1874.591) [-1871.406] -- 0:07:40
419000 -- [-1878.077] (-1880.966) (-1876.049) (-1878.813) * [-1868.996] (-1877.610) (-1868.331) (-1869.165) -- 0:07:38
420000 -- (-1885.510) [-1865.085] (-1879.567) (-1878.137) * [-1869.341] (-1885.149) (-1874.967) (-1865.979) -- 0:07:38
Average standard deviation of split frequencies: 0.010395
421000 -- (-1878.745) (-1878.107) (-1875.689) [-1868.849] * (-1865.758) (-1879.069) (-1875.186) [-1867.813] -- 0:07:37
422000 -- (-1876.542) (-1871.347) (-1880.595) [-1863.356] * (-1880.041) (-1872.410) [-1877.755] (-1876.560) -- 0:07:36
423000 -- (-1887.403) [-1869.414] (-1874.167) (-1865.617) * (-1876.266) (-1882.524) (-1893.399) [-1862.864] -- 0:07:35
424000 -- (-1889.608) [-1868.699] (-1869.196) (-1876.627) * [-1861.442] (-1871.189) (-1886.148) (-1865.657) -- 0:07:35
425000 -- [-1878.801] (-1873.593) (-1871.451) (-1890.018) * [-1864.193] (-1883.115) (-1872.901) (-1876.530) -- 0:07:33
Average standard deviation of split frequencies: 0.010407
426000 -- (-1858.919) [-1874.842] (-1877.109) (-1891.460) * (-1866.752) (-1884.467) (-1865.867) [-1881.741] -- 0:07:32
427000 -- [-1863.924] (-1875.441) (-1867.582) (-1883.564) * (-1869.844) [-1872.014] (-1884.090) (-1885.761) -- 0:07:30
428000 -- (-1865.133) (-1871.437) [-1878.481] (-1879.332) * (-1878.008) (-1865.215) (-1878.898) [-1865.099] -- 0:07:30
429000 -- (-1878.503) (-1888.731) [-1867.529] (-1879.117) * (-1869.811) (-1860.390) (-1888.284) [-1880.059] -- 0:07:29
430000 -- (-1873.906) [-1864.757] (-1870.163) (-1889.551) * [-1866.917] (-1872.670) (-1870.171) (-1882.543) -- 0:07:28
Average standard deviation of split frequencies: 0.010421
431000 -- [-1865.444] (-1879.862) (-1871.893) (-1886.669) * [-1859.492] (-1877.589) (-1872.526) (-1894.776) -- 0:07:27
432000 -- (-1871.953) [-1876.495] (-1870.584) (-1881.324) * (-1873.651) (-1858.326) [-1874.084] (-1890.065) -- 0:07:27
433000 -- (-1876.440) (-1876.135) [-1863.672] (-1868.431) * [-1866.785] (-1872.989) (-1873.964) (-1886.560) -- 0:07:25
434000 -- (-1873.999) [-1870.427] (-1876.511) (-1877.335) * (-1869.827) (-1875.407) [-1856.041] (-1877.206) -- 0:07:24
435000 -- (-1880.538) (-1878.764) [-1868.848] (-1870.731) * (-1882.423) (-1872.238) [-1870.629] (-1873.952) -- 0:07:24
Average standard deviation of split frequencies: 0.010159
436000 -- (-1891.522) [-1872.102] (-1876.877) (-1870.253) * (-1889.494) (-1892.369) (-1868.791) [-1869.576] -- 0:07:22
437000 -- (-1877.528) (-1855.862) (-1869.190) [-1870.811] * (-1870.451) (-1867.521) (-1865.385) [-1869.500] -- 0:07:21
438000 -- (-1901.243) [-1861.985] (-1883.463) (-1876.500) * (-1873.011) [-1872.584] (-1865.864) (-1865.683) -- 0:07:21
439000 -- (-1887.984) (-1878.381) [-1860.378] (-1869.320) * (-1871.073) (-1877.710) (-1869.976) [-1864.300] -- 0:07:19
440000 -- (-1873.582) (-1883.155) [-1866.765] (-1878.800) * [-1867.815] (-1878.744) (-1878.067) (-1869.053) -- 0:07:19
Average standard deviation of split frequencies: 0.010564
441000 -- (-1870.250) (-1864.194) [-1866.658] (-1871.815) * (-1867.979) [-1876.996] (-1882.926) (-1870.027) -- 0:07:17
442000 -- [-1870.670] (-1879.539) (-1871.844) (-1881.596) * (-1885.593) (-1889.994) (-1876.925) [-1873.403] -- 0:07:16
443000 -- (-1891.685) [-1881.857] (-1871.823) (-1879.870) * [-1878.808] (-1873.449) (-1878.449) (-1871.302) -- 0:07:16
444000 -- (-1872.149) (-1897.536) [-1870.647] (-1873.707) * (-1879.313) (-1865.955) (-1897.972) [-1866.249] -- 0:07:14
445000 -- (-1887.819) (-1864.514) [-1866.308] (-1872.672) * (-1878.604) (-1869.752) (-1890.493) [-1861.432] -- 0:07:14
Average standard deviation of split frequencies: 0.010548
446000 -- (-1876.103) (-1875.377) (-1883.141) [-1863.385] * (-1875.965) [-1865.601] (-1873.255) (-1866.896) -- 0:07:13
447000 -- (-1876.543) [-1870.697] (-1870.163) (-1871.047) * (-1865.753) [-1857.129] (-1868.370) (-1886.360) -- 0:07:11
448000 -- (-1879.203) (-1878.187) [-1860.270] (-1871.453) * (-1880.389) [-1866.590] (-1862.281) (-1885.289) -- 0:07:11
449000 -- [-1868.151] (-1875.945) (-1875.648) (-1868.380) * (-1868.832) [-1874.990] (-1881.894) (-1876.205) -- 0:07:10
450000 -- (-1875.533) [-1875.476] (-1866.772) (-1890.233) * (-1876.226) (-1866.521) (-1896.772) [-1867.357] -- 0:07:09
Average standard deviation of split frequencies: 0.010155
451000 -- (-1875.271) [-1870.821] (-1881.233) (-1884.605) * (-1870.537) (-1875.573) (-1891.493) [-1873.151] -- 0:07:08
452000 -- [-1882.733] (-1880.900) (-1902.087) (-1883.092) * (-1879.963) (-1875.407) [-1875.692] (-1878.933) -- 0:07:07
453000 -- (-1878.456) (-1883.149) (-1873.455) [-1869.872] * [-1870.769] (-1878.302) (-1880.021) (-1887.354) -- 0:07:06
454000 -- (-1865.719) [-1871.918] (-1886.135) (-1873.838) * (-1872.027) (-1875.787) [-1863.805] (-1876.878) -- 0:07:05
455000 -- [-1861.977] (-1886.154) (-1875.597) (-1870.972) * (-1879.020) (-1879.825) [-1872.296] (-1868.797) -- 0:07:04
Average standard deviation of split frequencies: 0.009799
456000 -- (-1865.221) [-1872.886] (-1900.708) (-1873.346) * (-1871.985) [-1865.652] (-1895.019) (-1866.226) -- 0:07:03
457000 -- (-1860.951) (-1873.360) (-1891.205) [-1864.380] * [-1859.624] (-1864.063) (-1893.318) (-1893.864) -- 0:07:02
458000 -- (-1880.247) [-1860.536] (-1893.565) (-1873.838) * (-1870.565) [-1868.028] (-1866.278) (-1882.185) -- 0:07:01
459000 -- [-1860.368] (-1869.095) (-1906.151) (-1881.146) * (-1877.493) [-1851.779] (-1894.265) (-1868.885) -- 0:07:00
460000 -- [-1868.732] (-1885.611) (-1868.982) (-1867.988) * (-1875.481) [-1870.048] (-1883.756) (-1879.408) -- 0:07:00
Average standard deviation of split frequencies: 0.009636
461000 -- [-1866.563] (-1899.818) (-1880.364) (-1876.522) * (-1880.670) (-1885.384) (-1878.257) [-1868.065] -- 0:06:58
462000 -- [-1869.058] (-1889.619) (-1868.876) (-1865.324) * (-1902.341) (-1871.401) [-1865.011] (-1876.283) -- 0:06:58
463000 -- (-1880.957) [-1862.330] (-1884.607) (-1872.748) * (-1892.859) (-1864.595) (-1866.270) [-1870.028] -- 0:06:57
464000 -- (-1867.805) (-1864.732) [-1868.034] (-1877.463) * [-1869.256] (-1871.133) (-1882.652) (-1879.377) -- 0:06:57
465000 -- (-1880.594) (-1860.129) (-1886.230) [-1867.080] * (-1873.325) [-1862.552] (-1879.342) (-1865.249) -- 0:06:56
Average standard deviation of split frequencies: 0.010179
466000 -- [-1874.924] (-1862.708) (-1885.898) (-1879.974) * (-1866.769) [-1865.618] (-1878.252) (-1870.551) -- 0:06:55
467000 -- (-1883.111) [-1867.762] (-1874.865) (-1885.460) * [-1862.791] (-1871.957) (-1871.761) (-1884.111) -- 0:06:55
468000 -- (-1882.933) (-1871.621) [-1871.305] (-1892.017) * [-1864.674] (-1870.761) (-1868.577) (-1868.776) -- 0:06:54
469000 -- (-1888.067) (-1862.155) [-1880.785] (-1882.057) * (-1869.007) [-1858.623] (-1881.715) (-1869.980) -- 0:06:54
470000 -- (-1872.016) (-1863.938) [-1857.301] (-1881.197) * (-1879.537) [-1878.587] (-1878.810) (-1879.413) -- 0:06:53
Average standard deviation of split frequencies: 0.009423
471000 -- (-1869.789) [-1859.564] (-1873.707) (-1878.964) * (-1865.455) [-1872.245] (-1883.818) (-1875.847) -- 0:06:53
472000 -- (-1878.916) [-1867.923] (-1879.765) (-1886.694) * (-1878.245) (-1865.091) [-1872.960] (-1885.534) -- 0:06:52
473000 -- (-1872.934) [-1868.043] (-1883.688) (-1873.074) * (-1872.614) [-1851.012] (-1872.773) (-1887.402) -- 0:06:52
474000 -- (-1876.776) [-1869.428] (-1891.485) (-1870.858) * (-1870.484) [-1861.639] (-1883.163) (-1886.570) -- 0:06:51
475000 -- (-1886.721) (-1873.589) [-1862.926] (-1877.880) * (-1883.591) (-1882.558) (-1892.123) [-1868.959] -- 0:06:51
Average standard deviation of split frequencies: 0.009681
476000 -- (-1887.322) [-1862.235] (-1876.723) (-1871.568) * (-1882.517) (-1871.313) (-1873.087) [-1863.474] -- 0:06:50
477000 -- [-1877.514] (-1877.638) (-1887.008) (-1879.319) * (-1880.054) (-1872.532) (-1875.991) [-1859.453] -- 0:06:50
478000 -- [-1869.717] (-1872.976) (-1875.527) (-1877.277) * (-1872.005) (-1868.825) (-1885.148) [-1865.819] -- 0:06:49
479000 -- (-1878.804) (-1871.273) [-1869.944] (-1876.210) * (-1875.328) [-1867.476] (-1876.128) (-1871.927) -- 0:06:48
480000 -- (-1885.562) (-1873.443) (-1876.753) [-1873.638] * (-1881.515) [-1871.331] (-1873.049) (-1869.676) -- 0:06:48
Average standard deviation of split frequencies: 0.009267
481000 -- (-1892.390) (-1864.937) (-1870.461) [-1884.024] * (-1876.275) [-1868.542] (-1891.382) (-1874.760) -- 0:06:47
482000 -- (-1875.891) [-1865.107] (-1869.902) (-1890.450) * (-1875.882) [-1868.525] (-1887.129) (-1874.669) -- 0:06:47
483000 -- (-1868.865) [-1869.182] (-1885.688) (-1884.573) * (-1878.357) [-1876.230] (-1881.144) (-1866.881) -- 0:06:46
484000 -- (-1877.735) [-1862.509] (-1870.297) (-1868.225) * [-1860.101] (-1867.443) (-1880.643) (-1869.983) -- 0:06:46
485000 -- (-1868.051) (-1868.797) [-1875.866] (-1876.462) * (-1883.563) [-1865.137] (-1875.441) (-1870.634) -- 0:06:45
Average standard deviation of split frequencies: 0.009273
486000 -- [-1865.363] (-1879.841) (-1874.834) (-1883.858) * (-1881.392) (-1874.127) (-1892.255) [-1871.968] -- 0:06:45
487000 -- [-1871.511] (-1873.984) (-1883.424) (-1883.369) * (-1880.497) [-1863.776] (-1877.602) (-1868.668) -- 0:06:44
488000 -- [-1864.351] (-1880.318) (-1881.819) (-1872.593) * (-1875.394) (-1869.837) [-1864.687] (-1881.000) -- 0:06:43
489000 -- (-1872.570) (-1864.905) (-1880.663) [-1872.791] * (-1877.567) (-1882.841) (-1881.727) [-1864.364] -- 0:06:43
490000 -- (-1893.561) [-1870.315] (-1896.911) (-1875.877) * [-1866.946] (-1895.634) (-1881.015) (-1868.078) -- 0:06:42
Average standard deviation of split frequencies: 0.008647
491000 -- (-1864.697) (-1856.939) (-1882.634) [-1876.880] * [-1871.414] (-1875.697) (-1876.700) (-1869.972) -- 0:06:42
492000 -- (-1871.809) [-1863.231] (-1882.239) (-1886.251) * (-1887.827) (-1870.854) [-1871.593] (-1873.421) -- 0:06:41
493000 -- (-1869.850) [-1867.919] (-1884.303) (-1892.634) * (-1876.533) [-1866.684] (-1879.712) (-1876.103) -- 0:06:41
494000 -- [-1872.511] (-1868.113) (-1887.944) (-1873.688) * (-1865.629) [-1878.191] (-1881.842) (-1872.914) -- 0:06:40
495000 -- (-1900.303) [-1872.880] (-1873.227) (-1874.779) * (-1864.747) [-1870.138] (-1873.791) (-1886.436) -- 0:06:39
Average standard deviation of split frequencies: 0.008649
496000 -- [-1868.421] (-1875.159) (-1874.941) (-1895.585) * (-1871.454) [-1875.766] (-1868.860) (-1892.818) -- 0:06:39
497000 -- (-1867.465) [-1881.316] (-1871.902) (-1889.627) * (-1882.020) (-1875.762) [-1869.727] (-1878.894) -- 0:06:38
498000 -- (-1865.253) [-1866.941] (-1867.333) (-1882.697) * (-1876.232) (-1882.634) (-1868.057) [-1868.696] -- 0:06:38
499000 -- [-1870.456] (-1883.362) (-1873.413) (-1894.896) * (-1881.504) (-1884.334) [-1856.637] (-1868.575) -- 0:06:37
500000 -- [-1875.349] (-1873.827) (-1872.160) (-1889.906) * [-1873.039] (-1880.439) (-1884.096) (-1872.358) -- 0:06:37
Average standard deviation of split frequencies: 0.008628
501000 -- (-1886.022) [-1861.718] (-1883.987) (-1880.192) * (-1871.981) (-1875.221) [-1879.667] (-1880.228) -- 0:06:36
502000 -- [-1878.694] (-1866.979) (-1883.344) (-1878.589) * [-1873.431] (-1875.098) (-1876.767) (-1891.311) -- 0:06:35
503000 -- [-1883.591] (-1881.298) (-1894.625) (-1865.708) * (-1886.542) (-1878.961) [-1870.552] (-1874.403) -- 0:06:35
504000 -- (-1882.389) [-1873.478] (-1890.469) (-1885.222) * (-1882.442) (-1881.094) (-1870.687) [-1866.993] -- 0:06:34
505000 -- (-1865.646) (-1870.851) [-1871.303] (-1872.764) * (-1874.750) (-1875.252) (-1875.937) [-1870.722] -- 0:06:33
Average standard deviation of split frequencies: 0.008955
506000 -- [-1865.774] (-1888.085) (-1882.421) (-1877.140) * (-1877.943) (-1872.580) [-1864.824] (-1882.462) -- 0:06:32
507000 -- (-1872.946) [-1880.611] (-1876.293) (-1873.270) * (-1873.088) (-1852.781) [-1859.908] (-1883.691) -- 0:06:31
508000 -- (-1882.730) (-1875.151) (-1876.985) [-1859.780] * (-1876.557) (-1869.957) [-1864.687] (-1879.106) -- 0:06:31
509000 -- (-1884.265) [-1880.134] (-1871.982) (-1871.507) * (-1877.959) (-1878.827) [-1861.987] (-1873.439) -- 0:06:30
510000 -- (-1891.150) (-1879.781) (-1869.137) [-1867.801] * [-1865.130] (-1871.677) (-1880.735) (-1869.081) -- 0:06:30
Average standard deviation of split frequencies: 0.009212
511000 -- (-1877.867) (-1889.832) (-1888.271) [-1865.150] * (-1866.625) [-1872.288] (-1862.684) (-1870.881) -- 0:06:29
512000 -- (-1884.804) [-1872.208] (-1868.343) (-1868.846) * (-1886.423) (-1887.100) [-1870.575] (-1869.798) -- 0:06:28
513000 -- [-1888.173] (-1865.847) (-1882.367) (-1868.926) * (-1881.745) (-1864.004) (-1882.103) [-1872.413] -- 0:06:28
514000 -- (-1880.018) (-1870.526) [-1874.577] (-1864.129) * (-1889.928) [-1869.296] (-1864.824) (-1871.366) -- 0:06:27
515000 -- (-1890.844) (-1887.063) [-1857.497] (-1864.159) * (-1884.088) (-1867.099) [-1866.918] (-1881.760) -- 0:06:27
Average standard deviation of split frequencies: 0.008837
516000 -- (-1877.682) (-1870.741) [-1868.981] (-1882.955) * (-1872.426) (-1868.504) [-1864.116] (-1872.874) -- 0:06:26
517000 -- (-1876.167) (-1884.512) (-1878.526) [-1863.682] * (-1891.490) (-1879.990) (-1867.872) [-1868.418] -- 0:06:24
518000 -- (-1873.975) [-1878.206] (-1900.684) (-1865.562) * (-1870.576) (-1909.805) (-1871.433) [-1864.742] -- 0:06:24
519000 -- (-1877.282) (-1876.454) (-1890.863) [-1863.962] * (-1874.179) (-1888.308) (-1878.999) [-1861.376] -- 0:06:23
520000 -- [-1869.490] (-1888.738) (-1889.382) (-1879.877) * (-1890.838) (-1892.106) [-1871.305] (-1878.929) -- 0:06:22
Average standard deviation of split frequencies: 0.008961
521000 -- (-1878.735) (-1884.932) [-1877.041] (-1876.819) * (-1871.879) (-1873.649) [-1863.331] (-1872.483) -- 0:06:21
522000 -- [-1871.388] (-1880.113) (-1879.845) (-1874.697) * (-1876.048) (-1884.690) [-1864.035] (-1878.856) -- 0:06:20
523000 -- [-1865.321] (-1897.150) (-1881.874) (-1873.392) * (-1869.855) [-1867.695] (-1870.513) (-1883.105) -- 0:06:19
524000 -- [-1856.646] (-1876.453) (-1872.111) (-1879.698) * (-1870.248) (-1883.152) [-1876.850] (-1869.048) -- 0:06:18
525000 -- (-1864.524) [-1871.722] (-1887.810) (-1870.501) * (-1876.404) (-1873.798) (-1878.124) [-1863.323] -- 0:06:18
Average standard deviation of split frequencies: 0.008926
526000 -- [-1857.592] (-1874.120) (-1873.098) (-1864.910) * [-1867.939] (-1885.150) (-1888.167) (-1867.923) -- 0:06:16
527000 -- [-1867.007] (-1879.921) (-1876.168) (-1864.851) * (-1885.120) (-1874.302) (-1879.646) [-1870.438] -- 0:06:16
528000 -- [-1863.962] (-1878.214) (-1870.699) (-1866.480) * [-1866.657] (-1872.823) (-1893.613) (-1873.163) -- 0:06:15
529000 -- (-1879.090) [-1863.414] (-1874.703) (-1877.380) * (-1886.303) [-1860.245] (-1875.835) (-1873.634) -- 0:06:14
530000 -- [-1877.100] (-1874.195) (-1874.451) (-1875.172) * (-1867.761) [-1864.492] (-1865.315) (-1887.808) -- 0:06:14
Average standard deviation of split frequencies: 0.008386
531000 -- (-1859.582) (-1877.121) [-1864.978] (-1882.946) * (-1868.766) [-1863.776] (-1885.773) (-1874.330) -- 0:06:13
532000 -- [-1860.139] (-1890.103) (-1868.014) (-1882.145) * (-1879.164) (-1875.717) (-1884.085) [-1864.459] -- 0:06:12
533000 -- [-1867.709] (-1877.588) (-1863.532) (-1870.620) * (-1875.539) [-1878.384] (-1879.382) (-1881.379) -- 0:06:12
534000 -- [-1872.173] (-1889.477) (-1876.300) (-1883.665) * (-1879.643) (-1880.192) [-1870.628] (-1883.181) -- 0:06:11
535000 -- [-1865.275] (-1902.737) (-1881.028) (-1872.426) * [-1869.568] (-1868.545) (-1884.119) (-1870.989) -- 0:06:11
Average standard deviation of split frequencies: 0.008302
536000 -- [-1867.373] (-1875.126) (-1887.929) (-1868.012) * [-1863.702] (-1868.940) (-1871.482) (-1874.053) -- 0:06:10
537000 -- (-1871.387) (-1892.125) [-1868.897] (-1887.380) * (-1872.881) [-1862.163] (-1878.745) (-1880.363) -- 0:06:09
538000 -- [-1864.429] (-1861.929) (-1877.428) (-1888.810) * [-1863.468] (-1863.694) (-1876.925) (-1895.096) -- 0:06:09
539000 -- (-1866.911) (-1880.480) [-1869.379] (-1871.868) * (-1881.810) (-1865.235) (-1878.226) [-1866.661] -- 0:06:08
540000 -- [-1858.722] (-1874.992) (-1888.094) (-1884.817) * [-1869.217] (-1894.420) (-1867.473) (-1862.849) -- 0:06:08
Average standard deviation of split frequencies: 0.008043
541000 -- (-1882.973) (-1879.914) (-1880.567) [-1864.309] * [-1863.176] (-1883.972) (-1870.592) (-1870.637) -- 0:06:07
542000 -- (-1873.432) (-1873.574) [-1863.782] (-1875.490) * [-1865.996] (-1889.095) (-1853.504) (-1869.537) -- 0:06:06
543000 -- (-1861.300) (-1861.181) (-1883.490) [-1870.183] * (-1877.908) (-1889.389) [-1863.197] (-1880.526) -- 0:06:06
544000 -- (-1889.740) (-1872.743) (-1875.852) [-1860.061] * [-1862.650] (-1873.787) (-1868.951) (-1881.078) -- 0:06:05
545000 -- (-1878.164) [-1864.178] (-1880.814) (-1873.978) * [-1862.513] (-1880.160) (-1874.486) (-1886.864) -- 0:06:04
Average standard deviation of split frequencies: 0.008600
546000 -- (-1859.122) [-1876.794] (-1883.541) (-1866.179) * [-1872.374] (-1883.440) (-1869.008) (-1886.061) -- 0:06:04
547000 -- [-1877.873] (-1895.373) (-1887.221) (-1875.338) * (-1877.705) (-1880.298) (-1869.346) [-1866.298] -- 0:06:03
548000 -- (-1875.793) [-1873.984] (-1879.185) (-1899.278) * (-1879.141) (-1875.198) [-1866.207] (-1868.104) -- 0:06:02
549000 -- (-1879.467) (-1869.790) (-1874.809) [-1870.994] * [-1866.848] (-1874.191) (-1864.351) (-1878.802) -- 0:06:02
550000 -- (-1877.758) [-1870.097] (-1877.260) (-1872.563) * [-1865.939] (-1867.428) (-1882.158) (-1879.171) -- 0:06:01
Average standard deviation of split frequencies: 0.008611
551000 -- (-1885.241) [-1867.298] (-1873.444) (-1867.813) * (-1877.398) (-1876.230) (-1874.889) [-1868.842] -- 0:06:00
552000 -- [-1881.494] (-1871.050) (-1875.268) (-1875.753) * (-1885.447) [-1872.028] (-1889.283) (-1873.641) -- 0:06:00
553000 -- (-1876.202) (-1873.241) (-1881.800) [-1860.334] * (-1883.612) (-1879.014) [-1869.451] (-1862.463) -- 0:05:59
554000 -- (-1883.338) (-1864.391) (-1882.233) [-1865.683] * (-1888.387) (-1869.291) (-1866.296) [-1862.138] -- 0:05:59
555000 -- (-1883.459) [-1857.247] (-1873.862) (-1868.920) * (-1880.699) (-1870.015) [-1855.887] (-1880.280) -- 0:05:58
Average standard deviation of split frequencies: 0.008861
556000 -- (-1880.944) (-1868.796) (-1874.693) [-1865.382] * (-1877.662) (-1881.673) [-1872.686] (-1883.806) -- 0:05:57
557000 -- (-1890.346) (-1871.054) [-1871.723] (-1872.828) * (-1865.006) (-1886.300) (-1878.123) [-1866.039] -- 0:05:57
558000 -- (-1879.706) (-1871.625) [-1860.761] (-1870.299) * (-1874.940) (-1876.523) (-1877.144) [-1865.861] -- 0:05:56
559000 -- (-1867.662) [-1864.426] (-1876.842) (-1869.814) * (-1884.046) (-1866.722) (-1883.217) [-1858.983] -- 0:05:55
560000 -- [-1866.882] (-1879.096) (-1879.254) (-1874.892) * (-1879.748) [-1865.856] (-1896.620) (-1866.209) -- 0:05:55
Average standard deviation of split frequencies: 0.009117
561000 -- (-1874.816) (-1877.570) [-1867.576] (-1871.911) * (-1873.560) (-1877.395) [-1879.267] (-1871.750) -- 0:05:55
562000 -- (-1873.071) (-1890.239) (-1873.638) [-1874.032] * (-1873.957) (-1875.884) [-1869.807] (-1876.148) -- 0:05:54
563000 -- (-1887.663) (-1882.043) [-1881.146] (-1873.309) * [-1872.481] (-1873.329) (-1864.651) (-1887.891) -- 0:05:53
564000 -- (-1883.516) (-1892.056) (-1877.039) [-1858.922] * (-1873.646) (-1869.303) [-1861.432] (-1893.492) -- 0:05:53
565000 -- (-1877.401) [-1868.108] (-1870.681) (-1879.742) * (-1877.468) [-1871.662] (-1862.912) (-1875.441) -- 0:05:52
Average standard deviation of split frequencies: 0.009096
566000 -- (-1888.415) (-1874.190) [-1863.935] (-1870.373) * [-1859.241] (-1875.421) (-1875.351) (-1884.581) -- 0:05:51
567000 -- (-1876.856) (-1872.177) [-1861.187] (-1872.716) * [-1871.330] (-1877.904) (-1872.640) (-1879.946) -- 0:05:51
568000 -- (-1883.258) [-1870.784] (-1862.122) (-1879.153) * [-1866.377] (-1882.558) (-1876.762) (-1887.601) -- 0:05:50
569000 -- (-1874.431) [-1861.589] (-1880.882) (-1885.167) * [-1876.745] (-1890.156) (-1867.901) (-1878.515) -- 0:05:49
570000 -- [-1867.258] (-1876.750) (-1873.107) (-1885.365) * [-1879.149] (-1875.491) (-1884.660) (-1869.609) -- 0:05:49
Average standard deviation of split frequencies: 0.008855
571000 -- (-1891.040) [-1871.463] (-1880.170) (-1892.812) * (-1866.442) (-1897.617) [-1886.430] (-1867.303) -- 0:05:48
572000 -- (-1890.304) [-1865.629] (-1863.613) (-1870.726) * (-1876.164) (-1874.127) [-1866.057] (-1863.305) -- 0:05:47
573000 -- (-1889.333) [-1874.526] (-1890.437) (-1855.698) * (-1887.578) (-1870.598) (-1883.361) [-1858.660] -- 0:05:47
574000 -- (-1887.462) [-1865.299] (-1872.725) (-1872.159) * (-1878.695) (-1878.589) [-1862.371] (-1892.331) -- 0:05:46
575000 -- [-1873.619] (-1872.198) (-1873.679) (-1879.861) * [-1866.923] (-1878.474) (-1873.536) (-1886.060) -- 0:05:45
Average standard deviation of split frequencies: 0.008675
576000 -- (-1870.987) [-1867.996] (-1878.793) (-1892.085) * (-1883.809) (-1891.133) (-1861.923) [-1877.502] -- 0:05:45
577000 -- (-1874.924) [-1868.204] (-1877.626) (-1874.821) * (-1886.115) (-1882.183) [-1863.329] (-1874.613) -- 0:05:44
578000 -- (-1887.535) [-1869.402] (-1888.607) (-1884.823) * (-1877.134) [-1878.503] (-1868.392) (-1866.517) -- 0:05:43
579000 -- [-1866.825] (-1878.736) (-1877.981) (-1875.177) * (-1886.741) (-1872.447) [-1870.023] (-1873.146) -- 0:05:43
580000 -- [-1857.627] (-1877.507) (-1882.895) (-1868.340) * [-1861.035] (-1880.775) (-1888.203) (-1869.955) -- 0:05:42
Average standard deviation of split frequencies: 0.008654
581000 -- (-1879.372) (-1882.574) [-1874.606] (-1865.768) * [-1870.491] (-1881.208) (-1881.765) (-1880.383) -- 0:05:41
582000 -- (-1867.943) [-1861.828] (-1876.087) (-1884.272) * [-1862.438] (-1893.396) (-1882.852) (-1869.442) -- 0:05:41
583000 -- [-1865.530] (-1882.845) (-1888.811) (-1885.980) * (-1865.587) (-1875.550) [-1863.718] (-1873.840) -- 0:05:40
584000 -- (-1864.603) (-1886.948) [-1881.223] (-1870.289) * [-1868.213] (-1885.375) (-1875.299) (-1877.984) -- 0:05:39
585000 -- (-1877.993) (-1880.279) [-1867.232] (-1890.967) * (-1868.191) [-1868.122] (-1885.613) (-1892.693) -- 0:05:39
Average standard deviation of split frequencies: 0.008913
586000 -- (-1879.112) (-1875.727) (-1871.068) [-1873.788] * [-1865.809] (-1867.150) (-1871.101) (-1892.144) -- 0:05:38
587000 -- (-1870.769) (-1872.488) [-1868.364] (-1866.756) * (-1882.697) (-1879.766) [-1874.586] (-1875.494) -- 0:05:37
588000 -- (-1888.851) (-1877.247) [-1862.258] (-1882.781) * (-1876.315) (-1875.338) (-1871.472) [-1876.892] -- 0:05:36
589000 -- (-1897.321) (-1888.309) [-1864.678] (-1879.574) * (-1877.045) [-1862.622] (-1869.709) (-1872.054) -- 0:05:35
590000 -- (-1880.503) (-1868.515) [-1862.499] (-1876.182) * (-1883.988) [-1874.629] (-1896.258) (-1889.393) -- 0:05:34
Average standard deviation of split frequencies: 0.008955
591000 -- [-1869.378] (-1878.455) (-1865.370) (-1882.477) * (-1873.399) [-1861.630] (-1872.179) (-1878.597) -- 0:05:33
592000 -- (-1878.218) (-1878.810) (-1876.051) [-1865.474] * (-1879.146) [-1873.747] (-1876.838) (-1883.891) -- 0:05:32
593000 -- [-1867.846] (-1871.839) (-1880.919) (-1875.651) * (-1871.339) (-1868.800) (-1880.074) [-1873.477] -- 0:05:32
594000 -- (-1879.328) (-1871.293) [-1857.286] (-1880.335) * (-1880.147) (-1872.559) [-1869.785] (-1870.125) -- 0:05:30
595000 -- [-1872.055] (-1861.876) (-1865.441) (-1881.727) * (-1870.683) [-1865.128] (-1872.963) (-1880.597) -- 0:05:30
Average standard deviation of split frequencies: 0.009508
596000 -- (-1873.096) [-1857.023] (-1884.528) (-1883.293) * [-1864.246] (-1875.862) (-1881.814) (-1871.845) -- 0:05:29
597000 -- (-1879.190) (-1854.956) [-1867.791] (-1872.264) * (-1867.251) (-1874.261) [-1864.982] (-1868.580) -- 0:05:28
598000 -- (-1874.623) (-1874.748) (-1868.759) [-1865.343] * (-1873.476) (-1868.712) (-1860.782) [-1860.520] -- 0:05:27
599000 -- (-1870.198) [-1865.316] (-1880.947) (-1868.967) * (-1861.718) [-1873.571] (-1871.498) (-1855.603) -- 0:05:26
600000 -- (-1873.857) [-1868.491] (-1869.685) (-1878.642) * (-1869.775) [-1863.654] (-1885.561) (-1869.915) -- 0:05:25
Average standard deviation of split frequencies: 0.009145
601000 -- [-1867.297] (-1885.875) (-1873.045) (-1877.768) * [-1875.267] (-1879.159) (-1884.623) (-1879.082) -- 0:05:24
602000 -- (-1877.634) (-1872.890) [-1876.298] (-1884.505) * [-1869.523] (-1878.476) (-1883.290) (-1878.049) -- 0:05:23
603000 -- (-1878.832) [-1859.115] (-1883.905) (-1883.559) * [-1866.086] (-1888.323) (-1868.732) (-1887.828) -- 0:05:22
604000 -- [-1870.229] (-1869.778) (-1871.999) (-1880.051) * (-1866.091) (-1874.484) [-1870.581] (-1870.031) -- 0:05:21
605000 -- (-1877.291) (-1866.335) [-1872.663] (-1888.370) * (-1865.746) [-1861.584] (-1876.521) (-1877.300) -- 0:05:20
Average standard deviation of split frequencies: 0.009192
606000 -- (-1871.589) [-1874.921] (-1885.339) (-1864.906) * (-1890.120) [-1861.915] (-1868.762) (-1878.440) -- 0:05:19
607000 -- (-1878.995) [-1868.125] (-1881.052) (-1873.199) * (-1875.823) (-1876.331) (-1883.489) [-1871.240] -- 0:05:19
608000 -- (-1883.861) (-1870.006) [-1874.712] (-1877.452) * (-1867.890) [-1866.533] (-1882.292) (-1881.774) -- 0:05:17
609000 -- (-1884.962) (-1877.340) [-1867.940] (-1863.664) * (-1870.633) (-1861.444) (-1887.824) [-1864.208] -- 0:05:17
610000 -- (-1911.501) (-1872.530) [-1856.796] (-1863.787) * (-1880.534) (-1867.355) (-1870.717) [-1868.481] -- 0:05:15
Average standard deviation of split frequencies: 0.008933
611000 -- (-1885.426) [-1861.235] (-1872.226) (-1861.125) * (-1879.171) [-1872.545] (-1859.605) (-1883.292) -- 0:05:15
612000 -- [-1876.149] (-1872.002) (-1884.477) (-1868.001) * (-1870.405) (-1864.949) (-1872.831) [-1861.738] -- 0:05:14
613000 -- (-1878.035) (-1873.573) (-1871.659) [-1864.255] * [-1874.594] (-1883.700) (-1880.769) (-1866.414) -- 0:05:13
614000 -- (-1886.572) (-1877.844) (-1882.283) [-1870.801] * (-1868.459) (-1909.667) [-1866.343] (-1870.930) -- 0:05:12
615000 -- (-1876.555) (-1902.059) (-1868.340) [-1870.772] * [-1860.319] (-1876.513) (-1872.415) (-1891.595) -- 0:05:11
Average standard deviation of split frequencies: 0.008724
616000 -- [-1870.485] (-1883.964) (-1873.208) (-1880.809) * (-1886.730) (-1878.194) [-1869.751] (-1890.249) -- 0:05:10
617000 -- [-1862.822] (-1859.374) (-1869.392) (-1881.190) * [-1868.837] (-1865.149) (-1861.165) (-1893.661) -- 0:05:09
618000 -- (-1870.952) [-1869.451] (-1888.151) (-1865.538) * [-1873.329] (-1867.172) (-1882.091) (-1880.437) -- 0:05:09
619000 -- (-1866.202) (-1867.436) (-1879.036) [-1864.176] * [-1861.788] (-1876.566) (-1883.362) (-1894.565) -- 0:05:07
620000 -- (-1869.756) [-1854.472] (-1886.121) (-1864.630) * (-1889.410) [-1872.115] (-1875.449) (-1874.141) -- 0:05:07
Average standard deviation of split frequencies: 0.009130
621000 -- (-1873.878) (-1869.693) (-1885.823) [-1861.861] * (-1867.827) (-1878.570) (-1866.866) [-1869.315] -- 0:05:06
622000 -- (-1872.270) (-1866.626) (-1879.337) [-1862.394] * (-1875.399) (-1875.553) [-1870.180] (-1881.439) -- 0:05:05
623000 -- [-1864.082] (-1886.080) (-1886.257) (-1864.623) * (-1883.155) (-1862.521) (-1875.744) [-1864.853] -- 0:05:04
624000 -- [-1868.652] (-1872.108) (-1889.416) (-1874.334) * (-1877.400) (-1862.431) (-1897.576) [-1865.459] -- 0:05:03
625000 -- (-1884.457) [-1858.818] (-1880.953) (-1868.386) * (-1872.479) (-1862.600) (-1891.181) [-1872.892] -- 0:05:02
Average standard deviation of split frequencies: 0.009144
626000 -- (-1877.171) [-1867.231] (-1892.435) (-1874.911) * [-1871.313] (-1876.044) (-1886.552) (-1875.954) -- 0:05:01
627000 -- [-1867.059] (-1889.794) (-1875.241) (-1878.095) * (-1875.646) [-1866.626] (-1878.910) (-1872.599) -- 0:05:01
628000 -- [-1874.344] (-1887.826) (-1881.370) (-1880.604) * (-1872.035) (-1865.117) [-1866.915] (-1879.332) -- 0:04:59
629000 -- (-1885.983) (-1880.552) [-1865.342] (-1881.149) * [-1862.292] (-1871.655) (-1869.669) (-1874.969) -- 0:04:59
630000 -- (-1880.841) (-1878.901) [-1872.328] (-1891.172) * (-1862.656) (-1878.150) (-1871.669) [-1864.667] -- 0:04:57
Average standard deviation of split frequencies: 0.009153
631000 -- [-1863.043] (-1876.432) (-1877.409) (-1868.598) * [-1871.715] (-1893.491) (-1867.189) (-1871.396) -- 0:04:57
632000 -- (-1892.577) [-1870.668] (-1870.118) (-1883.891) * [-1860.648] (-1877.483) (-1871.484) (-1876.497) -- 0:04:56
633000 -- (-1893.646) (-1862.188) [-1864.752] (-1878.381) * (-1865.458) (-1868.709) (-1865.165) [-1878.179] -- 0:04:55
634000 -- (-1885.960) [-1865.988] (-1876.749) (-1877.458) * [-1860.499] (-1892.972) (-1862.295) (-1880.972) -- 0:04:54
635000 -- (-1883.563) (-1879.473) (-1883.990) [-1866.596] * (-1871.151) (-1888.311) [-1874.860] (-1870.371) -- 0:04:53
Average standard deviation of split frequencies: 0.009378
636000 -- (-1875.713) (-1876.589) (-1864.942) [-1872.198] * [-1868.541] (-1881.177) (-1876.349) (-1879.961) -- 0:04:52
637000 -- (-1879.523) (-1877.566) [-1864.172] (-1862.979) * [-1869.968] (-1865.554) (-1873.599) (-1872.686) -- 0:04:51
638000 -- (-1865.830) [-1870.447] (-1876.083) (-1868.643) * (-1874.882) (-1873.642) (-1878.613) [-1866.717] -- 0:04:51
639000 -- (-1880.614) (-1878.961) [-1874.535] (-1871.135) * (-1878.716) (-1887.068) [-1867.012] (-1876.049) -- 0:04:49
640000 -- (-1873.826) (-1883.027) [-1869.369] (-1868.552) * (-1885.750) (-1877.193) (-1874.104) [-1860.818] -- 0:04:49
Average standard deviation of split frequencies: 0.009626
641000 -- [-1867.704] (-1873.519) (-1876.034) (-1856.410) * (-1883.796) (-1869.869) (-1870.629) [-1883.654] -- 0:04:48
642000 -- (-1878.871) (-1895.076) (-1872.988) [-1862.497] * [-1868.262] (-1874.256) (-1866.047) (-1872.414) -- 0:04:47
643000 -- [-1869.809] (-1876.174) (-1887.318) (-1867.750) * [-1865.172] (-1881.267) (-1864.438) (-1870.641) -- 0:04:46
644000 -- [-1863.710] (-1883.332) (-1888.867) (-1883.692) * (-1864.566) (-1882.424) (-1870.066) [-1873.573] -- 0:04:45
645000 -- [-1867.295] (-1901.974) (-1875.915) (-1873.445) * (-1870.881) [-1867.865] (-1873.656) (-1884.371) -- 0:04:44
Average standard deviation of split frequencies: 0.009603
646000 -- (-1874.456) (-1895.184) (-1875.619) [-1873.229] * (-1873.308) [-1862.775] (-1865.188) (-1880.603) -- 0:04:43
647000 -- [-1880.854] (-1881.006) (-1890.875) (-1874.509) * (-1874.992) (-1867.404) (-1871.587) [-1875.915] -- 0:04:42
648000 -- (-1876.530) (-1897.822) [-1867.193] (-1873.687) * (-1876.997) [-1865.165] (-1870.066) (-1886.803) -- 0:04:41
649000 -- (-1870.820) (-1887.512) (-1875.739) [-1874.082] * (-1873.314) (-1870.356) [-1865.301] (-1875.662) -- 0:04:41
650000 -- (-1880.356) (-1883.516) [-1873.978] (-1870.587) * (-1882.390) (-1865.399) [-1870.325] (-1876.739) -- 0:04:40
Average standard deviation of split frequencies: 0.009752
651000 -- (-1876.258) (-1880.095) [-1867.350] (-1878.907) * (-1880.292) (-1860.734) [-1867.091] (-1884.421) -- 0:04:39
652000 -- (-1879.555) (-1874.322) [-1871.847] (-1870.579) * [-1873.238] (-1876.642) (-1868.141) (-1877.522) -- 0:04:38
653000 -- (-1884.788) (-1879.187) [-1869.387] (-1870.145) * (-1878.892) (-1886.482) [-1869.181] (-1886.819) -- 0:04:37
654000 -- (-1874.006) (-1868.224) (-1878.467) [-1868.643] * [-1867.899] (-1879.054) (-1879.591) (-1871.689) -- 0:04:36
655000 -- (-1886.511) [-1865.304] (-1870.626) (-1867.176) * (-1865.067) (-1888.801) [-1858.175] (-1878.184) -- 0:04:36
Average standard deviation of split frequencies: 0.009874
656000 -- [-1866.009] (-1868.709) (-1876.048) (-1879.931) * [-1862.557] (-1891.418) (-1870.571) (-1872.923) -- 0:04:34
657000 -- (-1880.677) [-1861.830] (-1880.161) (-1879.087) * (-1877.598) (-1885.562) (-1864.263) [-1879.543] -- 0:04:34
658000 -- (-1864.580) (-1866.302) [-1875.995] (-1872.324) * [-1875.691] (-1878.625) (-1872.254) (-1898.538) -- 0:04:32
659000 -- (-1874.398) [-1867.139] (-1877.815) (-1880.990) * [-1866.302] (-1873.520) (-1882.382) (-1898.324) -- 0:04:32
660000 -- (-1869.030) (-1879.201) (-1880.013) [-1871.315] * (-1864.062) (-1863.650) (-1876.479) [-1873.112] -- 0:04:31
Average standard deviation of split frequencies: 0.009975
661000 -- (-1867.493) (-1889.783) [-1874.624] (-1879.878) * (-1894.067) (-1874.514) (-1870.212) [-1862.724] -- 0:04:30
662000 -- [-1864.879] (-1868.831) (-1872.521) (-1875.701) * (-1876.881) (-1884.297) [-1871.467] (-1867.537) -- 0:04:29
663000 -- (-1860.214) (-1868.003) (-1865.994) [-1873.737] * [-1876.662] (-1874.544) (-1871.290) (-1882.652) -- 0:04:28
664000 -- (-1869.502) (-1886.561) (-1870.533) [-1872.397] * (-1884.641) (-1875.552) (-1869.047) [-1857.491] -- 0:04:27
665000 -- (-1881.831) (-1881.474) (-1867.917) [-1869.017] * (-1862.759) [-1861.797] (-1877.954) (-1876.806) -- 0:04:26
Average standard deviation of split frequencies: 0.009808
666000 -- (-1880.825) (-1869.972) [-1874.174] (-1892.099) * (-1868.033) [-1866.234] (-1880.640) (-1891.073) -- 0:04:26
667000 -- [-1869.125] (-1880.552) (-1873.875) (-1877.890) * [-1870.071] (-1864.499) (-1881.583) (-1886.006) -- 0:04:25
668000 -- (-1883.966) (-1886.023) [-1862.110] (-1874.353) * (-1884.258) [-1878.614] (-1876.975) (-1864.825) -- 0:04:24
669000 -- (-1891.998) [-1881.646] (-1866.317) (-1886.892) * (-1875.390) [-1869.831] (-1890.347) (-1871.927) -- 0:04:23
670000 -- (-1863.297) (-1873.784) [-1872.850] (-1882.849) * (-1873.822) [-1868.019] (-1872.009) (-1872.781) -- 0:04:22
Average standard deviation of split frequencies: 0.009840
671000 -- (-1863.503) [-1866.071] (-1876.740) (-1878.229) * (-1877.652) (-1873.425) (-1874.135) [-1872.661] -- 0:04:21
672000 -- (-1894.552) (-1880.752) [-1870.366] (-1879.452) * (-1888.657) (-1871.339) [-1873.656] (-1873.290) -- 0:04:20
673000 -- (-1891.531) (-1884.898) (-1874.192) [-1865.874] * (-1896.945) [-1871.252] (-1872.367) (-1863.196) -- 0:04:19
674000 -- (-1889.138) (-1884.938) (-1868.791) [-1867.505] * (-1890.610) (-1875.498) [-1874.356] (-1867.979) -- 0:04:19
675000 -- (-1883.560) (-1874.509) [-1866.647] (-1876.089) * (-1876.775) (-1883.141) [-1874.783] (-1872.916) -- 0:04:18
Average standard deviation of split frequencies: 0.010076
676000 -- (-1896.966) (-1877.225) [-1865.474] (-1875.476) * (-1863.327) [-1869.903] (-1885.962) (-1872.759) -- 0:04:17
677000 -- (-1884.039) [-1870.208] (-1868.355) (-1873.097) * [-1870.430] (-1871.292) (-1872.332) (-1877.733) -- 0:04:16
678000 -- (-1877.437) (-1869.618) (-1878.328) [-1871.222] * [-1865.489] (-1870.389) (-1889.845) (-1886.140) -- 0:04:15
679000 -- [-1861.586] (-1878.332) (-1881.413) (-1889.701) * (-1872.703) (-1878.668) (-1881.332) [-1867.782] -- 0:04:14
680000 -- (-1869.800) [-1876.293] (-1868.583) (-1891.680) * (-1865.613) (-1874.109) [-1868.148] (-1876.288) -- 0:04:14
Average standard deviation of split frequencies: 0.009696
681000 -- [-1865.275] (-1889.134) (-1857.292) (-1880.541) * [-1875.814] (-1875.174) (-1876.992) (-1873.946) -- 0:04:12
682000 -- (-1883.053) (-1872.879) (-1871.798) [-1869.374] * (-1876.381) [-1864.058] (-1875.535) (-1870.340) -- 0:04:12
683000 -- (-1897.460) (-1869.326) [-1867.297] (-1866.943) * [-1873.520] (-1879.365) (-1871.921) (-1875.818) -- 0:04:11
684000 -- (-1898.221) (-1880.406) (-1867.783) [-1873.670] * [-1860.572] (-1880.931) (-1873.553) (-1873.413) -- 0:04:10
685000 -- (-1884.877) [-1858.429] (-1878.169) (-1868.929) * [-1862.898] (-1890.226) (-1880.147) (-1880.767) -- 0:04:09
Average standard deviation of split frequencies: 0.009592
686000 -- [-1878.104] (-1874.451) (-1873.027) (-1874.300) * (-1873.736) [-1872.910] (-1886.711) (-1899.216) -- 0:04:08
687000 -- [-1875.448] (-1881.243) (-1882.285) (-1868.882) * (-1893.427) [-1872.380] (-1869.497) (-1882.172) -- 0:04:07
688000 -- (-1877.802) [-1871.744] (-1892.473) (-1873.316) * (-1882.006) (-1879.063) [-1856.958] (-1883.839) -- 0:04:07
689000 -- [-1877.909] (-1902.740) (-1880.717) (-1878.273) * (-1880.937) (-1870.814) (-1860.000) [-1870.867] -- 0:04:06
690000 -- (-1903.558) (-1872.576) (-1874.323) [-1863.943] * (-1891.845) (-1880.352) (-1876.033) [-1864.430] -- 0:04:05
Average standard deviation of split frequencies: 0.009764
691000 -- (-1895.469) (-1872.315) [-1863.074] (-1869.228) * (-1879.332) [-1875.685] (-1878.529) (-1886.405) -- 0:04:04
692000 -- (-1891.592) (-1876.589) [-1867.078] (-1869.203) * (-1884.062) (-1878.233) [-1875.803] (-1882.357) -- 0:04:03
693000 -- (-1891.919) [-1867.060] (-1866.936) (-1877.905) * (-1891.034) (-1873.861) [-1867.478] (-1870.622) -- 0:04:02
694000 -- (-1878.248) (-1890.439) [-1872.660] (-1881.839) * (-1883.533) (-1879.442) (-1874.824) [-1873.406] -- 0:04:01
695000 -- [-1857.925] (-1883.169) (-1878.497) (-1864.075) * (-1872.470) [-1857.572] (-1886.301) (-1863.925) -- 0:04:00
Average standard deviation of split frequencies: 0.009731
696000 -- [-1865.558] (-1878.335) (-1862.353) (-1879.258) * (-1871.237) (-1858.510) (-1886.223) [-1870.891] -- 0:04:00
697000 -- [-1858.015] (-1892.968) (-1865.222) (-1873.871) * (-1867.384) (-1876.284) (-1884.488) [-1871.182] -- 0:03:59
698000 -- [-1863.592] (-1888.568) (-1890.658) (-1873.524) * (-1874.345) (-1868.745) (-1897.828) [-1867.505] -- 0:03:58
699000 -- (-1875.379) (-1877.331) [-1871.546] (-1872.989) * (-1877.624) [-1865.795] (-1868.269) (-1884.172) -- 0:03:57
700000 -- [-1867.377] (-1869.655) (-1891.451) (-1873.948) * (-1877.368) (-1875.668) [-1869.566] (-1868.728) -- 0:03:56
Average standard deviation of split frequencies: 0.009666
701000 -- [-1872.343] (-1877.851) (-1884.303) (-1888.605) * (-1863.734) (-1866.721) (-1873.010) [-1860.190] -- 0:03:55
702000 -- [-1861.134] (-1872.515) (-1879.829) (-1888.599) * (-1873.481) (-1875.662) (-1877.747) [-1871.505] -- 0:03:55
703000 -- [-1870.612] (-1873.563) (-1875.723) (-1874.081) * (-1863.622) [-1864.119] (-1889.340) (-1872.884) -- 0:03:54
704000 -- (-1872.553) (-1874.485) (-1878.191) [-1859.758] * [-1866.638] (-1876.708) (-1879.521) (-1868.962) -- 0:03:53
705000 -- (-1870.480) [-1871.578] (-1870.939) (-1855.770) * (-1874.739) (-1869.587) (-1889.843) [-1868.650] -- 0:03:52
Average standard deviation of split frequencies: 0.009811
706000 -- (-1883.514) (-1887.366) (-1875.260) [-1867.270] * (-1867.782) [-1868.540] (-1879.190) (-1874.488) -- 0:03:51
707000 -- (-1873.081) [-1858.147] (-1882.024) (-1868.479) * (-1867.771) [-1864.367] (-1875.358) (-1871.512) -- 0:03:50
708000 -- [-1871.192] (-1857.913) (-1873.197) (-1884.474) * (-1878.415) (-1873.749) [-1867.034] (-1874.978) -- 0:03:49
709000 -- (-1879.156) [-1876.719] (-1882.465) (-1868.365) * (-1868.725) (-1876.900) (-1872.124) [-1870.460] -- 0:03:49
710000 -- [-1862.464] (-1877.480) (-1880.569) (-1867.953) * (-1885.493) (-1868.359) (-1871.025) [-1876.781] -- 0:03:48
Average standard deviation of split frequencies: 0.009605
711000 -- (-1867.707) (-1880.258) [-1872.435] (-1871.424) * [-1867.843] (-1865.058) (-1866.550) (-1874.054) -- 0:03:47
712000 -- (-1867.128) (-1867.304) (-1899.372) [-1872.475] * (-1893.282) (-1876.299) (-1876.639) [-1878.969] -- 0:03:46
713000 -- [-1868.103] (-1881.252) (-1868.957) (-1866.347) * (-1880.871) [-1866.728] (-1880.904) (-1877.514) -- 0:03:45
714000 -- (-1879.724) (-1866.507) (-1879.667) [-1865.424] * (-1882.390) [-1872.745] (-1889.212) (-1886.490) -- 0:03:44
715000 -- [-1883.581] (-1877.948) (-1870.698) (-1873.528) * (-1892.688) [-1864.038] (-1874.603) (-1868.411) -- 0:03:44
Average standard deviation of split frequencies: 0.009494
716000 -- (-1895.077) (-1873.316) [-1870.757] (-1890.717) * (-1886.151) (-1862.819) [-1866.281] (-1876.730) -- 0:03:42
717000 -- (-1871.687) [-1862.659] (-1869.234) (-1865.913) * (-1874.258) [-1868.813] (-1869.407) (-1879.280) -- 0:03:42
718000 -- (-1870.581) (-1872.208) (-1873.835) [-1863.000] * (-1875.988) [-1870.593] (-1873.114) (-1874.077) -- 0:03:41
719000 -- (-1881.471) [-1873.209] (-1883.215) (-1875.225) * (-1873.910) (-1882.988) [-1868.496] (-1880.855) -- 0:03:40
720000 -- [-1885.457] (-1876.799) (-1896.830) (-1877.228) * [-1870.744] (-1876.288) (-1867.472) (-1886.461) -- 0:03:39
Average standard deviation of split frequencies: 0.009367
721000 -- (-1881.737) (-1892.570) [-1876.484] (-1869.799) * [-1878.309] (-1872.394) (-1877.425) (-1876.786) -- 0:03:39
722000 -- (-1887.932) (-1887.814) (-1866.518) [-1868.152] * [-1871.956] (-1877.745) (-1883.000) (-1867.543) -- 0:03:37
723000 -- (-1877.136) (-1882.832) [-1868.920] (-1879.656) * (-1873.966) (-1882.719) (-1871.429) [-1870.914] -- 0:03:37
724000 -- [-1867.006] (-1880.755) (-1882.170) (-1875.102) * (-1869.925) (-1877.493) [-1868.109] (-1876.426) -- 0:03:36
725000 -- [-1868.310] (-1879.293) (-1869.781) (-1893.634) * (-1876.108) (-1875.435) (-1866.478) [-1862.950] -- 0:03:35
Average standard deviation of split frequencies: 0.009428
726000 -- (-1868.407) (-1883.112) [-1871.977] (-1871.380) * (-1870.920) (-1872.385) [-1868.543] (-1882.164) -- 0:03:34
727000 -- [-1875.081] (-1881.720) (-1869.651) (-1864.165) * (-1869.400) (-1876.856) [-1868.805] (-1887.266) -- 0:03:33
728000 -- (-1879.336) (-1875.371) [-1875.510] (-1885.137) * (-1869.459) (-1883.137) [-1864.826] (-1899.284) -- 0:03:32
729000 -- (-1883.020) (-1876.540) [-1866.987] (-1878.146) * (-1865.890) (-1884.917) (-1871.942) [-1868.686] -- 0:03:32
730000 -- (-1879.254) (-1871.090) [-1870.746] (-1908.617) * (-1866.421) (-1878.993) [-1871.202] (-1871.162) -- 0:03:31
Average standard deviation of split frequencies: 0.009510
731000 -- (-1864.171) [-1874.765] (-1860.050) (-1894.272) * [-1878.385] (-1880.798) (-1866.008) (-1868.177) -- 0:03:30
732000 -- [-1872.994] (-1869.577) (-1871.613) (-1886.589) * (-1869.687) [-1880.864] (-1878.349) (-1860.236) -- 0:03:29
733000 -- (-1877.270) [-1863.615] (-1881.709) (-1897.955) * [-1867.632] (-1872.951) (-1866.985) (-1876.894) -- 0:03:28
734000 -- (-1887.691) [-1873.039] (-1887.897) (-1878.922) * (-1873.302) (-1876.838) (-1863.179) [-1869.204] -- 0:03:28
735000 -- (-1869.346) (-1884.760) [-1876.106] (-1866.259) * (-1893.755) (-1870.421) [-1864.766] (-1891.351) -- 0:03:26
Average standard deviation of split frequencies: 0.009492
736000 -- (-1866.054) (-1884.147) (-1877.922) [-1861.651] * (-1889.556) [-1873.886] (-1882.815) (-1877.040) -- 0:03:26
737000 -- [-1862.494] (-1894.134) (-1869.989) (-1876.789) * [-1872.541] (-1875.581) (-1884.963) (-1902.193) -- 0:03:25
738000 -- (-1870.681) (-1894.195) (-1875.298) [-1867.802] * (-1878.282) (-1870.443) [-1875.752] (-1889.570) -- 0:03:24
739000 -- [-1867.293] (-1882.436) (-1881.027) (-1882.742) * (-1870.910) (-1879.812) [-1874.965] (-1891.636) -- 0:03:23
740000 -- (-1874.904) [-1870.814] (-1870.503) (-1878.134) * (-1881.460) [-1870.750] (-1869.602) (-1892.208) -- 0:03:23
Average standard deviation of split frequencies: 0.009394
741000 -- (-1864.769) [-1873.199] (-1875.200) (-1873.239) * (-1873.936) [-1873.796] (-1874.061) (-1870.156) -- 0:03:22
742000 -- (-1876.248) [-1863.148] (-1877.821) (-1875.278) * (-1889.911) [-1858.935] (-1869.029) (-1880.191) -- 0:03:21
743000 -- (-1884.282) [-1871.481] (-1886.034) (-1874.202) * (-1863.590) (-1881.565) [-1859.189] (-1877.794) -- 0:03:20
744000 -- (-1896.282) [-1862.331] (-1866.626) (-1884.945) * (-1878.437) (-1871.759) [-1859.514] (-1876.332) -- 0:03:19
745000 -- (-1887.317) (-1875.974) [-1861.471] (-1866.753) * (-1887.563) (-1870.572) [-1874.804] (-1870.917) -- 0:03:18
Average standard deviation of split frequencies: 0.009327
746000 -- [-1867.950] (-1870.498) (-1869.356) (-1893.893) * (-1871.454) (-1878.351) [-1867.742] (-1883.726) -- 0:03:17
747000 -- [-1859.251] (-1862.800) (-1883.443) (-1882.394) * [-1863.471] (-1866.324) (-1870.111) (-1895.468) -- 0:03:17
748000 -- (-1879.565) [-1863.011] (-1888.973) (-1899.889) * (-1858.423) [-1869.134] (-1872.067) (-1880.078) -- 0:03:16
749000 -- (-1876.573) [-1859.924] (-1889.329) (-1878.153) * (-1868.023) [-1874.097] (-1866.309) (-1883.467) -- 0:03:15
750000 -- (-1885.448) [-1865.846] (-1882.065) (-1883.523) * (-1874.173) [-1864.017] (-1877.707) (-1870.566) -- 0:03:14
Average standard deviation of split frequencies: 0.009181
751000 -- (-1888.137) [-1863.013] (-1874.675) (-1885.247) * (-1882.215) [-1864.972] (-1872.542) (-1870.928) -- 0:03:13
752000 -- (-1886.234) [-1868.763] (-1884.712) (-1867.836) * (-1884.566) [-1859.086] (-1877.595) (-1878.707) -- 0:03:13
753000 -- (-1884.514) [-1873.067] (-1887.834) (-1872.149) * (-1873.510) [-1853.474] (-1880.659) (-1881.267) -- 0:03:12
754000 -- (-1883.140) (-1893.549) [-1868.618] (-1858.797) * (-1891.695) [-1863.872] (-1878.248) (-1880.809) -- 0:03:11
755000 -- (-1882.774) (-1885.084) (-1860.863) [-1874.811] * (-1879.571) (-1872.015) [-1876.037] (-1891.779) -- 0:03:11
Average standard deviation of split frequencies: 0.008942
756000 -- (-1881.594) (-1871.242) [-1865.572] (-1882.841) * [-1864.811] (-1865.100) (-1869.912) (-1879.285) -- 0:03:10
757000 -- (-1893.053) (-1881.853) (-1889.303) [-1864.865] * (-1890.975) (-1884.688) (-1859.019) [-1867.938] -- 0:03:09
758000 -- (-1869.015) (-1871.157) (-1894.954) [-1858.425] * (-1885.631) (-1886.739) [-1861.797] (-1883.994) -- 0:03:09
759000 -- (-1867.456) (-1865.380) (-1889.165) [-1865.406] * (-1895.411) (-1879.926) [-1862.216] (-1872.390) -- 0:03:08
760000 -- (-1878.802) (-1874.063) (-1875.113) [-1876.916] * (-1871.464) (-1868.925) [-1864.084] (-1870.101) -- 0:03:07
Average standard deviation of split frequencies: 0.008899
761000 -- (-1868.049) (-1883.453) [-1876.546] (-1863.539) * [-1865.903] (-1869.208) (-1869.702) (-1878.105) -- 0:03:06
762000 -- (-1883.191) (-1878.741) (-1885.110) [-1865.701] * (-1862.599) (-1875.728) [-1861.874] (-1880.192) -- 0:03:06
763000 -- [-1868.613] (-1873.453) (-1891.000) (-1874.153) * (-1870.929) (-1878.198) (-1869.233) [-1861.217] -- 0:03:05
764000 -- (-1877.922) (-1896.267) [-1882.045] (-1893.881) * (-1884.969) (-1873.950) [-1860.190] (-1875.838) -- 0:03:05
765000 -- [-1865.632] (-1884.327) (-1883.971) (-1867.001) * (-1888.603) [-1869.827] (-1877.691) (-1904.807) -- 0:03:04
Average standard deviation of split frequencies: 0.008948
766000 -- [-1859.868] (-1885.868) (-1886.948) (-1874.455) * [-1875.843] (-1870.326) (-1865.086) (-1884.652) -- 0:03:03
767000 -- (-1877.067) (-1881.372) (-1884.846) [-1878.355] * (-1873.860) [-1871.132] (-1865.557) (-1884.692) -- 0:03:02
768000 -- [-1861.372] (-1866.511) (-1881.460) (-1872.884) * [-1872.463] (-1872.533) (-1865.726) (-1874.482) -- 0:03:01
769000 -- [-1869.486] (-1868.209) (-1879.114) (-1873.523) * (-1862.239) (-1870.685) [-1871.716] (-1880.605) -- 0:03:00
770000 -- (-1894.607) (-1874.203) (-1873.061) [-1866.000] * (-1870.163) [-1861.675] (-1870.805) (-1881.583) -- 0:03:00
Average standard deviation of split frequencies: 0.009224
771000 -- (-1883.421) (-1888.595) (-1869.547) [-1871.144] * (-1874.665) (-1879.786) [-1863.019] (-1871.856) -- 0:02:59
772000 -- (-1887.957) (-1874.250) (-1876.682) [-1869.474] * (-1874.770) [-1857.925] (-1872.899) (-1886.467) -- 0:02:58
773000 -- (-1879.342) (-1876.165) (-1887.315) [-1869.225] * (-1887.158) [-1870.127] (-1878.014) (-1867.624) -- 0:02:57
774000 -- (-1874.913) (-1866.819) (-1868.917) [-1867.241] * (-1869.014) (-1883.390) (-1874.564) [-1869.303] -- 0:02:57
775000 -- (-1870.845) (-1895.029) [-1866.636] (-1873.997) * (-1869.821) [-1873.840] (-1879.574) (-1867.005) -- 0:02:56
Average standard deviation of split frequencies: 0.009246
776000 -- [-1875.309] (-1876.683) (-1876.682) (-1865.776) * (-1874.083) (-1887.270) [-1876.141] (-1862.400) -- 0:02:55
777000 -- (-1873.283) [-1870.267] (-1889.565) (-1865.636) * (-1874.274) (-1881.838) [-1871.166] (-1877.407) -- 0:02:55
778000 -- [-1875.124] (-1893.445) (-1897.532) (-1863.559) * (-1878.600) (-1880.479) [-1866.176] (-1898.733) -- 0:02:54
779000 -- (-1859.480) (-1901.483) (-1874.311) [-1873.627] * (-1880.590) (-1865.459) [-1871.372] (-1886.063) -- 0:02:53
780000 -- (-1871.603) (-1894.877) [-1865.540] (-1874.136) * (-1885.391) [-1859.456] (-1875.041) (-1868.543) -- 0:02:53
Average standard deviation of split frequencies: 0.009299
781000 -- [-1859.648] (-1894.948) (-1881.038) (-1889.870) * (-1878.808) [-1870.049] (-1896.942) (-1869.680) -- 0:02:52
782000 -- (-1883.256) [-1872.861] (-1875.270) (-1875.763) * (-1884.524) [-1877.690] (-1873.868) (-1865.937) -- 0:02:51
783000 -- (-1909.263) (-1876.358) [-1866.306] (-1880.675) * (-1875.855) (-1888.743) (-1891.313) [-1869.652] -- 0:02:50
784000 -- (-1901.611) (-1874.380) [-1875.167] (-1873.873) * (-1868.029) (-1883.803) (-1879.386) [-1864.068] -- 0:02:50
785000 -- (-1903.784) (-1876.913) [-1868.527] (-1877.863) * (-1882.916) (-1872.774) [-1872.062] (-1877.393) -- 0:02:49
Average standard deviation of split frequencies: 0.009212
786000 -- (-1884.370) (-1878.436) [-1869.106] (-1872.461) * (-1883.990) (-1871.804) (-1880.333) [-1887.284] -- 0:02:48
787000 -- (-1889.666) (-1884.881) [-1865.466] (-1862.791) * (-1874.750) (-1892.010) (-1881.272) [-1866.467] -- 0:02:48
788000 -- (-1895.941) (-1884.997) (-1872.397) [-1869.445] * [-1861.310] (-1891.569) (-1877.656) (-1878.311) -- 0:02:47
789000 -- (-1888.449) (-1877.741) (-1880.087) [-1880.202] * [-1864.725] (-1876.645) (-1880.479) (-1876.208) -- 0:02:46
790000 -- (-1881.636) [-1872.800] (-1872.061) (-1864.088) * [-1858.576] (-1887.441) (-1884.742) (-1882.731) -- 0:02:45
Average standard deviation of split frequencies: 0.009206
791000 -- [-1871.677] (-1868.592) (-1881.555) (-1877.269) * [-1865.929] (-1881.576) (-1881.870) (-1896.496) -- 0:02:45
792000 -- (-1872.265) [-1868.799] (-1865.285) (-1877.456) * (-1882.345) (-1872.270) [-1878.281] (-1880.427) -- 0:02:44
793000 -- (-1854.855) [-1866.397] (-1876.698) (-1877.077) * (-1875.018) [-1859.876] (-1872.297) (-1866.743) -- 0:02:43
794000 -- [-1875.650] (-1880.605) (-1872.679) (-1886.247) * (-1880.568) (-1876.738) (-1879.953) [-1869.264] -- 0:02:42
795000 -- (-1869.577) (-1892.881) [-1878.188] (-1882.619) * (-1883.133) (-1873.003) [-1866.530] (-1871.325) -- 0:02:42
Average standard deviation of split frequencies: 0.008919
796000 -- (-1873.089) (-1884.812) (-1868.524) [-1870.703] * [-1863.933] (-1870.180) (-1882.996) (-1863.700) -- 0:02:41
797000 -- (-1881.625) (-1883.286) [-1862.118] (-1876.171) * [-1863.787] (-1873.781) (-1879.511) (-1870.636) -- 0:02:40
798000 -- (-1877.149) (-1877.395) [-1864.569] (-1867.076) * (-1880.062) (-1874.300) (-1877.650) [-1859.996] -- 0:02:39
799000 -- (-1886.756) (-1869.380) (-1869.437) [-1858.238] * [-1864.451] (-1867.963) (-1876.374) (-1887.037) -- 0:02:39
800000 -- (-1890.792) (-1869.806) [-1862.368] (-1861.182) * [-1870.826] (-1876.152) (-1889.952) (-1890.324) -- 0:02:38
Average standard deviation of split frequencies: 0.008761
801000 -- (-1873.492) (-1871.030) (-1879.341) [-1868.135] * [-1863.571] (-1888.022) (-1886.762) (-1875.509) -- 0:02:37
802000 -- (-1887.583) (-1868.167) (-1891.129) [-1862.630] * (-1869.679) (-1882.833) (-1870.345) [-1867.134] -- 0:02:37
803000 -- (-1878.602) [-1865.515] (-1902.120) (-1867.517) * [-1871.842] (-1885.974) (-1876.193) (-1865.999) -- 0:02:36
804000 -- (-1872.572) [-1864.528] (-1862.417) (-1876.273) * (-1888.111) [-1866.522] (-1872.326) (-1867.552) -- 0:02:35
805000 -- [-1866.229] (-1867.314) (-1872.844) (-1874.321) * (-1887.237) (-1887.613) (-1866.927) [-1862.526] -- 0:02:34
Average standard deviation of split frequencies: 0.008633
806000 -- [-1863.218] (-1879.225) (-1883.882) (-1870.483) * (-1895.673) [-1865.090] (-1872.106) (-1871.716) -- 0:02:34
807000 -- (-1876.499) [-1883.604] (-1879.983) (-1870.456) * (-1860.634) (-1862.142) (-1888.313) [-1859.032] -- 0:02:33
808000 -- (-1882.036) [-1868.608] (-1881.604) (-1885.491) * (-1870.489) [-1869.685] (-1882.948) (-1869.902) -- 0:02:32
809000 -- (-1869.185) [-1866.047] (-1883.078) (-1876.711) * (-1871.205) (-1876.592) (-1885.316) [-1873.584] -- 0:02:31
810000 -- (-1872.160) (-1870.323) [-1858.684] (-1904.773) * (-1875.309) (-1874.994) [-1870.337] (-1870.552) -- 0:02:31
Average standard deviation of split frequencies: 0.008734
811000 -- (-1874.943) [-1868.934] (-1867.368) (-1876.563) * [-1873.836] (-1882.936) (-1872.247) (-1860.955) -- 0:02:30
812000 -- (-1874.976) (-1872.165) [-1864.849] (-1887.345) * (-1882.480) [-1878.251] (-1876.203) (-1865.739) -- 0:02:29
813000 -- (-1872.465) [-1865.401] (-1860.700) (-1878.651) * (-1884.582) (-1880.725) [-1873.272] (-1870.730) -- 0:02:28
814000 -- (-1876.207) (-1881.107) [-1865.673] (-1878.371) * (-1891.313) [-1857.724] (-1874.973) (-1878.231) -- 0:02:27
815000 -- (-1872.136) (-1889.826) (-1878.375) [-1861.983] * (-1878.197) [-1863.121] (-1881.490) (-1876.386) -- 0:02:26
Average standard deviation of split frequencies: 0.008418
816000 -- (-1870.714) (-1882.916) (-1884.276) [-1866.948] * [-1877.419] (-1867.812) (-1873.540) (-1872.774) -- 0:02:26
817000 -- [-1864.419] (-1876.160) (-1895.335) (-1868.318) * [-1858.246] (-1867.811) (-1886.489) (-1872.074) -- 0:02:25
818000 -- (-1869.808) (-1878.499) [-1859.044] (-1876.844) * (-1877.518) [-1874.496] (-1895.038) (-1869.152) -- 0:02:24
819000 -- (-1868.721) (-1878.552) [-1856.886] (-1874.613) * (-1881.491) [-1864.852] (-1891.615) (-1873.822) -- 0:02:23
820000 -- [-1864.565] (-1888.930) (-1865.964) (-1874.663) * (-1870.481) [-1865.686] (-1877.231) (-1872.084) -- 0:02:22
Average standard deviation of split frequencies: 0.008640
821000 -- (-1879.604) (-1885.020) [-1861.220] (-1864.123) * (-1874.039) (-1882.985) (-1896.468) [-1873.858] -- 0:02:21
822000 -- (-1877.240) [-1877.475] (-1868.369) (-1862.634) * [-1863.882] (-1876.476) (-1892.450) (-1877.648) -- 0:02:21
823000 -- (-1862.951) [-1870.065] (-1877.306) (-1865.897) * [-1868.044] (-1863.498) (-1881.539) (-1900.855) -- 0:02:20
824000 -- [-1870.017] (-1882.924) (-1863.797) (-1871.020) * (-1868.943) [-1870.712] (-1873.166) (-1885.745) -- 0:02:19
825000 -- (-1856.829) (-1890.457) (-1868.293) [-1870.337] * [-1875.562] (-1877.048) (-1884.416) (-1869.483) -- 0:02:18
Average standard deviation of split frequencies: 0.008766
826000 -- [-1865.020] (-1881.509) (-1895.499) (-1874.285) * [-1870.131] (-1864.120) (-1882.718) (-1866.909) -- 0:02:17
827000 -- (-1875.165) [-1871.847] (-1868.150) (-1887.137) * (-1867.672) [-1872.253] (-1880.765) (-1877.909) -- 0:02:17
828000 -- (-1874.293) [-1872.842] (-1872.261) (-1883.545) * [-1861.110] (-1878.109) (-1905.184) (-1884.853) -- 0:02:16
829000 -- [-1883.541] (-1890.487) (-1863.133) (-1883.328) * [-1859.106] (-1867.303) (-1877.437) (-1885.592) -- 0:02:15
830000 -- (-1895.378) (-1881.528) [-1870.730] (-1884.664) * [-1868.917] (-1865.795) (-1875.372) (-1881.638) -- 0:02:14
Average standard deviation of split frequencies: 0.008615
831000 -- [-1867.287] (-1871.616) (-1875.060) (-1881.576) * (-1878.479) [-1861.197] (-1868.311) (-1877.224) -- 0:02:13
832000 -- (-1863.613) (-1885.006) [-1867.185] (-1878.654) * (-1877.999) [-1860.174] (-1873.430) (-1871.454) -- 0:02:12
833000 -- (-1885.234) [-1878.458] (-1876.289) (-1873.310) * (-1873.159) [-1871.010] (-1875.602) (-1895.062) -- 0:02:12
834000 -- (-1885.123) (-1868.375) [-1871.284] (-1875.704) * (-1871.690) (-1883.486) (-1871.341) [-1882.409] -- 0:02:11
835000 -- (-1880.776) [-1857.963] (-1880.378) (-1871.640) * (-1862.813) (-1867.820) [-1874.227] (-1889.952) -- 0:02:10
Average standard deviation of split frequencies: 0.008424
836000 -- (-1873.434) (-1873.266) (-1886.488) [-1865.771] * (-1875.100) (-1879.236) [-1868.483] (-1868.051) -- 0:02:09
837000 -- [-1870.578] (-1867.614) (-1875.279) (-1876.152) * (-1890.745) (-1869.874) [-1873.548] (-1869.887) -- 0:02:08
838000 -- (-1875.780) (-1890.108) (-1872.916) [-1872.791] * (-1879.256) [-1875.362] (-1867.402) (-1869.567) -- 0:02:07
839000 -- (-1880.807) (-1886.584) (-1887.746) [-1868.457] * (-1876.306) (-1862.402) [-1866.716] (-1882.254) -- 0:02:07
840000 -- (-1872.758) (-1875.357) (-1869.732) [-1869.198] * [-1860.726] (-1877.589) (-1871.112) (-1884.660) -- 0:02:06
Average standard deviation of split frequencies: 0.008288
841000 -- [-1869.198] (-1871.434) (-1876.705) (-1877.101) * [-1870.076] (-1891.316) (-1866.441) (-1884.994) -- 0:02:05
842000 -- [-1878.880] (-1867.108) (-1877.904) (-1883.297) * (-1884.940) [-1859.565] (-1867.580) (-1884.563) -- 0:02:04
843000 -- (-1877.044) [-1869.161] (-1875.066) (-1895.098) * (-1867.107) (-1869.666) [-1864.560] (-1893.955) -- 0:02:03
844000 -- (-1888.327) [-1875.679] (-1856.925) (-1874.220) * (-1880.807) (-1870.414) [-1865.978] (-1879.947) -- 0:02:03
845000 -- (-1894.058) (-1885.908) (-1867.185) [-1864.640] * (-1882.590) (-1872.233) [-1865.196] (-1870.413) -- 0:02:02
Average standard deviation of split frequencies: 0.008514
846000 -- (-1881.218) [-1859.508] (-1862.546) (-1877.911) * (-1878.338) (-1872.715) (-1872.935) [-1865.278] -- 0:02:01
847000 -- (-1878.351) (-1868.728) [-1859.445] (-1881.636) * (-1876.381) (-1871.836) [-1865.003] (-1873.396) -- 0:02:00
848000 -- (-1878.574) [-1874.488] (-1869.589) (-1887.505) * [-1870.480] (-1873.622) (-1869.366) (-1892.229) -- 0:01:59
849000 -- [-1868.102] (-1872.643) (-1892.103) (-1873.439) * [-1868.723] (-1881.140) (-1883.163) (-1886.904) -- 0:01:58
850000 -- (-1875.627) (-1872.844) [-1869.331] (-1858.540) * (-1866.587) [-1864.258] (-1880.359) (-1892.350) -- 0:01:58
Average standard deviation of split frequencies: 0.008224
851000 -- (-1876.430) (-1888.368) [-1871.958] (-1868.709) * (-1874.457) [-1858.829] (-1871.824) (-1889.321) -- 0:01:57
852000 -- (-1872.873) [-1867.434] (-1865.169) (-1875.965) * (-1876.672) [-1868.825] (-1887.032) (-1891.340) -- 0:01:56
853000 -- (-1867.640) [-1865.220] (-1869.616) (-1891.530) * (-1871.321) [-1865.687] (-1871.814) (-1903.635) -- 0:01:55
854000 -- (-1866.405) (-1862.396) (-1866.606) [-1870.106] * (-1873.576) (-1866.762) [-1867.665] (-1879.005) -- 0:01:54
855000 -- (-1878.183) (-1877.035) [-1869.275] (-1867.251) * (-1866.611) [-1872.120] (-1870.840) (-1872.469) -- 0:01:54
Average standard deviation of split frequencies: 0.008217
856000 -- [-1866.360] (-1875.704) (-1889.429) (-1874.457) * [-1876.939] (-1877.406) (-1870.354) (-1866.945) -- 0:01:53
857000 -- [-1877.870] (-1875.969) (-1886.953) (-1865.524) * [-1865.046] (-1882.089) (-1882.656) (-1878.103) -- 0:01:52
858000 -- [-1866.587] (-1881.924) (-1884.643) (-1867.759) * [-1871.496] (-1881.346) (-1873.680) (-1862.813) -- 0:01:51
859000 -- (-1869.272) (-1868.348) (-1878.910) [-1866.389] * (-1878.478) [-1875.478] (-1880.992) (-1870.630) -- 0:01:50
860000 -- (-1885.913) [-1859.480] (-1879.805) (-1869.922) * (-1876.247) (-1868.724) [-1867.433] (-1882.652) -- 0:01:50
Average standard deviation of split frequencies: 0.008150
861000 -- (-1898.262) [-1856.798] (-1874.829) (-1882.087) * (-1863.508) (-1880.031) [-1879.665] (-1882.389) -- 0:01:49
862000 -- (-1867.608) [-1861.776] (-1881.130) (-1882.955) * (-1867.194) (-1885.886) (-1872.478) [-1874.873] -- 0:01:48
863000 -- (-1868.916) (-1869.203) [-1863.272] (-1880.508) * (-1878.446) (-1871.618) [-1865.845] (-1882.279) -- 0:01:47
864000 -- [-1867.412] (-1876.023) (-1873.807) (-1887.505) * (-1869.998) [-1881.266] (-1870.892) (-1870.998) -- 0:01:46
865000 -- (-1881.826) [-1871.748] (-1873.868) (-1875.130) * [-1875.274] (-1886.321) (-1871.644) (-1873.542) -- 0:01:45
Average standard deviation of split frequencies: 0.007947
866000 -- [-1874.030] (-1875.608) (-1873.381) (-1867.403) * (-1877.168) (-1871.065) [-1872.850] (-1879.328) -- 0:01:45
867000 -- [-1877.759] (-1868.112) (-1871.908) (-1884.056) * (-1869.665) (-1880.757) [-1867.238] (-1870.016) -- 0:01:44
868000 -- (-1876.561) (-1870.711) [-1864.919] (-1891.083) * (-1879.100) (-1862.314) (-1867.188) [-1867.178] -- 0:01:43
869000 -- (-1876.514) (-1871.835) [-1872.883] (-1874.998) * (-1881.163) [-1860.695] (-1878.050) (-1876.156) -- 0:01:42
870000 -- (-1871.915) (-1889.383) (-1868.317) [-1866.693] * (-1894.699) (-1880.766) [-1869.001] (-1881.256) -- 0:01:41
Average standard deviation of split frequencies: 0.008024
871000 -- (-1869.108) (-1878.220) (-1884.910) [-1860.861] * (-1885.308) (-1873.528) (-1881.110) [-1886.868] -- 0:01:41
872000 -- (-1862.055) (-1874.325) (-1879.258) [-1863.669] * (-1874.379) (-1875.286) [-1874.737] (-1882.449) -- 0:01:40
873000 -- [-1866.452] (-1867.438) (-1884.976) (-1873.889) * [-1876.030] (-1871.836) (-1882.694) (-1869.411) -- 0:01:39
874000 -- (-1863.112) (-1873.610) [-1884.183] (-1866.842) * (-1871.604) (-1886.290) [-1867.319] (-1871.870) -- 0:01:38
875000 -- [-1865.409] (-1891.568) (-1870.681) (-1880.859) * [-1865.602] (-1879.091) (-1871.508) (-1879.689) -- 0:01:38
Average standard deviation of split frequencies: 0.008442
876000 -- [-1868.891] (-1884.304) (-1877.194) (-1872.548) * (-1880.041) [-1869.302] (-1876.448) (-1868.570) -- 0:01:37
877000 -- (-1878.073) (-1888.833) (-1868.005) [-1862.644] * (-1883.818) (-1890.325) [-1876.140] (-1878.634) -- 0:01:36
878000 -- [-1870.153] (-1873.326) (-1897.740) (-1880.952) * (-1881.302) [-1867.984] (-1878.047) (-1889.871) -- 0:01:35
879000 -- (-1890.865) [-1879.692] (-1885.230) (-1882.441) * (-1891.775) [-1866.892] (-1869.997) (-1882.362) -- 0:01:34
880000 -- (-1867.797) [-1873.294] (-1874.955) (-1866.845) * (-1863.391) (-1882.469) [-1865.592] (-1879.662) -- 0:01:33
Average standard deviation of split frequencies: 0.008597
881000 -- (-1876.598) [-1858.957] (-1878.519) (-1875.140) * [-1858.662] (-1888.282) (-1881.597) (-1875.788) -- 0:01:33
882000 -- (-1877.458) [-1861.553] (-1876.369) (-1870.693) * (-1868.849) (-1878.967) (-1881.337) [-1872.919] -- 0:01:32
883000 -- (-1876.934) [-1858.611] (-1888.212) (-1863.323) * (-1868.720) (-1882.683) (-1891.886) [-1872.179] -- 0:01:31
884000 -- (-1874.772) [-1866.892] (-1890.383) (-1869.512) * (-1877.166) [-1868.406] (-1885.188) (-1872.222) -- 0:01:30
885000 -- (-1884.330) (-1868.987) (-1882.548) [-1878.999] * (-1888.762) (-1883.064) (-1873.819) [-1869.122] -- 0:01:29
Average standard deviation of split frequencies: 0.008643
886000 -- (-1869.026) (-1867.088) (-1900.409) [-1873.852] * (-1881.540) (-1874.871) (-1880.077) [-1868.279] -- 0:01:29
887000 -- (-1885.486) [-1858.024] (-1894.783) (-1882.268) * [-1867.010] (-1872.029) (-1875.948) (-1869.815) -- 0:01:28
888000 -- (-1887.465) [-1861.431] (-1880.922) (-1863.711) * (-1866.311) (-1871.956) (-1884.003) [-1868.227] -- 0:01:27
889000 -- (-1889.472) [-1860.189] (-1865.647) (-1872.623) * (-1874.850) [-1869.737] (-1863.303) (-1875.037) -- 0:01:26
890000 -- (-1879.450) (-1873.751) (-1886.110) [-1864.760] * (-1869.875) (-1872.279) (-1880.323) [-1872.188] -- 0:01:25
Average standard deviation of split frequencies: 0.008436
891000 -- (-1881.251) [-1868.942] (-1884.911) (-1859.982) * (-1872.264) (-1876.180) (-1878.828) [-1864.502] -- 0:01:25
892000 -- (-1876.957) [-1871.961] (-1884.633) (-1882.246) * (-1878.351) (-1861.700) (-1878.122) [-1870.191] -- 0:01:24
893000 -- (-1878.105) [-1867.607] (-1896.204) (-1880.256) * (-1865.462) (-1870.511) (-1881.166) [-1864.671] -- 0:01:23
894000 -- (-1874.568) (-1866.802) (-1882.260) [-1875.463] * (-1878.471) [-1870.792] (-1873.165) (-1862.761) -- 0:01:22
895000 -- [-1876.979] (-1885.784) (-1873.341) (-1868.347) * (-1868.501) [-1865.171] (-1873.395) (-1877.087) -- 0:01:22
Average standard deviation of split frequencies: 0.008525
896000 -- (-1872.700) (-1891.175) (-1884.541) [-1861.907] * (-1878.322) [-1880.381] (-1865.336) (-1872.984) -- 0:01:21
897000 -- (-1872.400) (-1889.177) (-1868.175) [-1864.191] * (-1891.327) (-1876.610) [-1872.743] (-1886.208) -- 0:01:20
898000 -- [-1860.865] (-1883.878) (-1880.425) (-1880.238) * (-1878.213) [-1867.917] (-1869.278) (-1872.737) -- 0:01:19
899000 -- (-1877.528) [-1866.352] (-1872.327) (-1896.151) * [-1878.261] (-1868.739) (-1878.898) (-1868.928) -- 0:01:18
900000 -- (-1857.035) (-1866.424) [-1865.043] (-1887.704) * (-1878.483) (-1863.915) [-1874.787] (-1887.468) -- 0:01:18
Average standard deviation of split frequencies: 0.008470
901000 -- [-1857.300] (-1868.507) (-1883.948) (-1874.207) * (-1879.307) [-1869.689] (-1878.501) (-1885.806) -- 0:01:17
902000 -- (-1870.068) (-1889.481) (-1884.877) [-1867.642] * (-1876.901) (-1867.828) (-1875.682) [-1855.925] -- 0:01:16
903000 -- (-1865.591) (-1876.603) (-1900.162) [-1876.714] * (-1873.760) [-1859.675] (-1873.697) (-1878.807) -- 0:01:15
904000 -- [-1871.094] (-1888.049) (-1890.632) (-1863.659) * (-1867.464) [-1860.041] (-1874.113) (-1887.749) -- 0:01:14
905000 -- (-1877.112) (-1873.203) [-1872.165] (-1866.742) * (-1872.494) (-1873.310) (-1876.396) [-1869.063] -- 0:01:14
Average standard deviation of split frequencies: 0.008283
906000 -- (-1882.149) (-1877.217) (-1891.831) [-1856.482] * [-1876.944] (-1869.988) (-1884.299) (-1893.854) -- 0:01:13
907000 -- (-1880.843) [-1867.122] (-1908.225) (-1866.661) * (-1869.720) (-1866.472) (-1901.129) [-1875.134] -- 0:01:12
908000 -- (-1865.577) (-1868.130) (-1897.586) [-1858.615] * (-1868.372) [-1879.725] (-1885.688) (-1877.250) -- 0:01:11
909000 -- (-1890.879) [-1863.295] (-1867.169) (-1865.225) * (-1882.328) (-1859.623) [-1875.510] (-1876.553) -- 0:01:10
910000 -- [-1867.077] (-1871.739) (-1874.913) (-1869.301) * (-1896.644) (-1882.130) (-1873.214) [-1873.095] -- 0:01:10
Average standard deviation of split frequencies: 0.008113
911000 -- [-1862.533] (-1864.554) (-1883.858) (-1864.470) * (-1883.628) (-1869.998) (-1869.307) [-1870.522] -- 0:01:09
912000 -- (-1885.264) [-1866.019] (-1877.432) (-1885.992) * [-1866.260] (-1869.231) (-1874.364) (-1894.300) -- 0:01:08
913000 -- (-1899.003) (-1860.519) [-1874.230] (-1891.134) * [-1862.657] (-1861.695) (-1871.547) (-1881.799) -- 0:01:07
914000 -- (-1882.757) (-1867.191) [-1863.061] (-1883.514) * (-1888.268) [-1862.136] (-1875.829) (-1884.711) -- 0:01:06
915000 -- (-1876.880) (-1873.962) [-1861.240] (-1886.436) * (-1886.338) [-1860.757] (-1874.667) (-1879.003) -- 0:01:06
Average standard deviation of split frequencies: 0.007972
916000 -- (-1884.182) (-1870.130) [-1860.417] (-1871.290) * [-1865.068] (-1875.788) (-1869.176) (-1887.093) -- 0:01:05
917000 -- [-1863.863] (-1876.459) (-1871.463) (-1885.280) * (-1882.854) [-1861.807] (-1883.552) (-1884.148) -- 0:01:04
918000 -- (-1873.534) (-1875.224) (-1861.741) [-1873.916] * (-1891.577) (-1868.741) (-1871.990) [-1867.245] -- 0:01:03
919000 -- (-1874.974) [-1867.834] (-1873.598) (-1888.874) * (-1889.457) (-1888.492) (-1881.048) [-1870.948] -- 0:01:02
920000 -- (-1886.077) [-1862.708] (-1885.940) (-1876.859) * (-1882.880) [-1870.012] (-1871.582) (-1877.694) -- 0:01:02
Average standard deviation of split frequencies: 0.007785
921000 -- (-1867.692) [-1867.991] (-1876.805) (-1874.113) * (-1891.587) [-1871.863] (-1888.438) (-1882.319) -- 0:01:01
922000 -- (-1873.144) [-1866.751] (-1881.776) (-1880.696) * (-1899.330) (-1864.292) (-1871.189) [-1861.724] -- 0:01:00
923000 -- (-1868.334) (-1889.945) [-1862.921] (-1875.626) * (-1882.375) (-1872.856) (-1863.164) [-1868.663] -- 0:00:59
924000 -- (-1877.211) (-1883.212) [-1869.580] (-1857.643) * (-1871.032) (-1884.694) (-1879.057) [-1861.957] -- 0:00:58
925000 -- [-1863.587] (-1886.187) (-1888.259) (-1874.295) * (-1867.450) [-1861.128] (-1877.256) (-1879.747) -- 0:00:58
Average standard deviation of split frequencies: 0.007844
926000 -- [-1867.306] (-1873.916) (-1873.521) (-1877.157) * (-1886.293) (-1868.911) [-1873.503] (-1870.807) -- 0:00:57
927000 -- [-1865.964] (-1869.119) (-1874.772) (-1885.423) * (-1873.125) (-1874.617) [-1864.332] (-1867.074) -- 0:00:56
928000 -- (-1874.378) [-1863.604] (-1893.682) (-1880.198) * (-1892.096) (-1876.999) (-1870.377) [-1870.761] -- 0:00:55
929000 -- (-1880.860) (-1857.323) (-1878.063) [-1876.405] * (-1884.786) (-1872.287) (-1878.138) [-1875.676] -- 0:00:55
930000 -- (-1880.674) [-1860.178] (-1892.856) (-1881.819) * [-1875.471] (-1864.885) (-1881.886) (-1872.978) -- 0:00:54
Average standard deviation of split frequencies: 0.008115
931000 -- (-1863.577) [-1863.341] (-1879.840) (-1892.679) * (-1878.027) [-1866.755] (-1881.288) (-1881.609) -- 0:00:53
932000 -- (-1867.089) [-1856.619] (-1879.446) (-1876.599) * [-1869.563] (-1875.552) (-1878.319) (-1885.471) -- 0:00:52
933000 -- (-1876.972) (-1877.672) (-1873.677) [-1867.320] * (-1869.235) (-1886.970) (-1865.601) [-1888.955] -- 0:00:51
934000 -- (-1890.306) (-1876.435) [-1876.361] (-1880.822) * (-1881.917) (-1876.988) (-1871.228) [-1869.025] -- 0:00:51
935000 -- [-1859.582] (-1874.662) (-1873.018) (-1892.086) * [-1871.234] (-1882.575) (-1865.137) (-1883.114) -- 0:00:50
Average standard deviation of split frequencies: 0.008130
936000 -- (-1879.432) (-1889.971) [-1873.788] (-1882.746) * (-1861.293) (-1877.376) [-1876.936] (-1884.748) -- 0:00:49
937000 -- (-1866.490) (-1895.916) (-1873.564) [-1865.023] * [-1867.168] (-1878.573) (-1886.795) (-1869.467) -- 0:00:48
938000 -- (-1868.384) [-1875.554] (-1876.342) (-1871.265) * (-1886.202) (-1871.123) (-1877.718) [-1871.484] -- 0:00:47
939000 -- (-1874.191) (-1869.584) (-1887.622) [-1869.877] * (-1874.405) [-1868.080] (-1878.357) (-1875.845) -- 0:00:47
940000 -- [-1875.860] (-1877.369) (-1883.284) (-1885.448) * (-1875.662) [-1866.255] (-1879.728) (-1886.764) -- 0:00:46
Average standard deviation of split frequencies: 0.007936
941000 -- (-1871.616) (-1872.017) (-1865.082) [-1861.380] * (-1863.331) [-1871.290] (-1872.721) (-1885.890) -- 0:00:45
942000 -- (-1877.172) (-1880.125) (-1876.732) [-1861.083] * (-1864.058) [-1851.658] (-1871.610) (-1880.537) -- 0:00:44
943000 -- (-1867.787) [-1870.535] (-1882.346) (-1866.485) * [-1874.157] (-1879.734) (-1876.909) (-1873.016) -- 0:00:44
944000 -- (-1867.177) (-1872.568) (-1887.837) [-1868.078] * (-1871.826) (-1882.697) (-1880.189) [-1872.121] -- 0:00:43
945000 -- (-1877.591) (-1878.627) [-1873.290] (-1873.111) * (-1866.567) (-1878.105) (-1867.165) [-1866.621] -- 0:00:42
Average standard deviation of split frequencies: 0.008187
946000 -- (-1881.795) (-1877.984) (-1904.006) [-1880.146] * (-1871.858) [-1866.981] (-1875.997) (-1904.167) -- 0:00:41
947000 -- (-1874.575) (-1870.236) (-1883.344) [-1866.957] * [-1870.403] (-1880.075) (-1862.640) (-1889.805) -- 0:00:40
948000 -- (-1869.778) (-1876.160) [-1869.619] (-1873.475) * (-1888.242) (-1894.629) (-1879.071) [-1868.422] -- 0:00:40
949000 -- (-1877.942) (-1877.196) (-1871.620) [-1874.581] * (-1875.813) (-1886.373) (-1878.084) [-1865.559] -- 0:00:39
950000 -- (-1879.825) [-1875.551] (-1876.541) (-1876.080) * [-1856.039] (-1882.829) (-1886.640) (-1879.571) -- 0:00:38
Average standard deviation of split frequencies: 0.008399
951000 -- (-1882.244) (-1878.752) (-1864.853) [-1860.281] * [-1869.332] (-1880.764) (-1891.246) (-1876.473) -- 0:00:37
952000 -- (-1883.628) (-1878.738) [-1868.317] (-1872.915) * (-1862.045) (-1874.610) [-1865.674] (-1873.018) -- 0:00:37
953000 -- [-1874.287] (-1866.690) (-1871.457) (-1868.624) * (-1885.773) (-1875.197) (-1875.943) [-1869.088] -- 0:00:36
954000 -- (-1873.592) (-1870.880) [-1869.189] (-1870.019) * (-1886.972) (-1882.035) (-1872.356) [-1870.363] -- 0:00:35
955000 -- (-1870.307) (-1871.588) [-1867.348] (-1881.293) * (-1876.150) (-1884.422) (-1866.865) [-1872.467] -- 0:00:34
Average standard deviation of split frequencies: 0.008353
956000 -- (-1873.438) [-1862.389] (-1868.021) (-1886.771) * (-1867.312) (-1878.867) (-1871.234) [-1866.389] -- 0:00:33
957000 -- [-1865.502] (-1868.259) (-1882.888) (-1885.077) * [-1864.300] (-1881.645) (-1866.771) (-1871.113) -- 0:00:33
958000 -- (-1875.091) (-1879.022) [-1877.790] (-1880.531) * (-1880.000) (-1881.859) [-1876.236] (-1878.913) -- 0:00:32
959000 -- (-1864.879) (-1866.375) (-1881.342) [-1879.747] * (-1866.365) (-1876.564) (-1889.530) [-1863.296] -- 0:00:31
960000 -- (-1867.971) (-1867.222) [-1872.721] (-1881.342) * [-1868.040] (-1878.272) (-1884.019) (-1862.010) -- 0:00:30
Average standard deviation of split frequencies: 0.008552
961000 -- [-1867.354] (-1868.267) (-1876.554) (-1893.107) * (-1873.969) (-1890.173) [-1872.718] (-1864.241) -- 0:00:30
962000 -- (-1881.586) (-1868.348) (-1873.589) [-1876.743] * (-1871.736) (-1886.994) (-1862.925) [-1865.026] -- 0:00:29
963000 -- (-1871.395) (-1871.658) (-1878.411) [-1863.201] * [-1869.540] (-1869.046) (-1870.886) (-1867.991) -- 0:00:28
964000 -- (-1869.810) [-1869.625] (-1875.264) (-1881.470) * (-1890.015) (-1873.251) [-1862.308] (-1865.667) -- 0:00:27
965000 -- (-1880.523) (-1860.539) (-1874.830) [-1869.308] * (-1877.028) (-1865.139) [-1870.968] (-1864.873) -- 0:00:26
Average standard deviation of split frequencies: 0.008744
966000 -- [-1868.853] (-1889.211) (-1887.178) (-1874.672) * (-1876.068) [-1872.558] (-1878.959) (-1875.501) -- 0:00:26
967000 -- (-1884.773) [-1881.312] (-1875.038) (-1874.160) * (-1883.783) [-1861.192] (-1864.555) (-1868.428) -- 0:00:25
968000 -- [-1865.604] (-1883.733) (-1889.069) (-1876.507) * (-1892.607) (-1870.579) [-1857.425] (-1874.210) -- 0:00:24
969000 -- (-1873.923) (-1877.173) (-1902.758) [-1882.424] * (-1885.851) (-1877.258) [-1867.825] (-1871.432) -- 0:00:23
970000 -- [-1875.925] (-1883.856) (-1894.472) (-1880.600) * (-1869.577) (-1879.689) [-1863.350] (-1871.381) -- 0:00:23
Average standard deviation of split frequencies: 0.008980
971000 -- (-1867.790) [-1881.680] (-1896.888) (-1888.851) * (-1871.261) (-1883.580) (-1864.212) [-1857.889] -- 0:00:22
972000 -- (-1876.702) [-1869.430] (-1878.754) (-1864.220) * (-1873.634) (-1880.895) [-1870.577] (-1871.168) -- 0:00:21
973000 -- [-1868.801] (-1869.549) (-1881.088) (-1881.443) * (-1870.805) [-1875.678] (-1879.705) (-1877.545) -- 0:00:20
974000 -- [-1864.983] (-1873.571) (-1874.969) (-1870.026) * (-1874.645) [-1876.454] (-1874.188) (-1882.648) -- 0:00:19
975000 -- (-1877.157) (-1879.454) [-1872.903] (-1887.677) * (-1881.640) (-1879.983) [-1863.469] (-1868.207) -- 0:00:19
Average standard deviation of split frequencies: 0.008950
976000 -- (-1885.987) (-1887.009) [-1857.011] (-1875.569) * (-1866.777) (-1881.956) [-1861.433] (-1881.449) -- 0:00:18
977000 -- (-1879.197) [-1859.673] (-1884.099) (-1878.243) * [-1864.833] (-1876.047) (-1883.045) (-1885.262) -- 0:00:17
978000 -- [-1862.885] (-1862.748) (-1889.883) (-1872.480) * (-1876.142) (-1868.391) [-1866.546] (-1880.585) -- 0:00:16
979000 -- (-1877.049) (-1885.809) (-1872.328) [-1866.271] * (-1877.339) (-1888.449) (-1875.856) [-1855.524] -- 0:00:16
980000 -- (-1876.986) (-1879.046) [-1868.887] (-1867.364) * (-1883.772) (-1864.930) [-1869.406] (-1871.112) -- 0:00:15
Average standard deviation of split frequencies: 0.008868
981000 -- [-1859.821] (-1873.913) (-1892.353) (-1879.460) * [-1859.594] (-1877.334) (-1884.181) (-1872.906) -- 0:00:14
982000 -- (-1875.860) [-1877.676] (-1889.290) (-1879.329) * [-1858.356] (-1867.325) (-1886.971) (-1880.583) -- 0:00:13
983000 -- [-1873.408] (-1878.853) (-1872.092) (-1885.481) * (-1859.171) (-1884.481) (-1891.796) [-1868.323] -- 0:00:13
984000 -- (-1880.341) (-1878.315) (-1867.372) [-1872.075] * [-1863.969] (-1894.312) (-1887.070) (-1869.544) -- 0:00:12
985000 -- [-1869.149] (-1881.527) (-1866.109) (-1868.696) * [-1867.342] (-1892.912) (-1871.119) (-1861.730) -- 0:00:11
Average standard deviation of split frequencies: 0.008850
986000 -- (-1875.864) (-1890.290) (-1870.761) [-1859.177] * [-1867.116] (-1885.289) (-1872.490) (-1867.637) -- 0:00:10
987000 -- (-1877.028) [-1865.489] (-1866.023) (-1864.710) * [-1867.621] (-1885.443) (-1875.404) (-1861.617) -- 0:00:09
988000 -- (-1877.567) (-1897.861) [-1868.485] (-1865.615) * (-1862.415) (-1876.383) (-1881.126) [-1873.761] -- 0:00:09
989000 -- (-1883.423) (-1866.414) [-1863.005] (-1872.438) * [-1866.616] (-1877.430) (-1876.066) (-1877.511) -- 0:00:08
990000 -- [-1875.199] (-1863.203) (-1878.130) (-1880.699) * [-1867.916] (-1872.044) (-1898.623) (-1881.835) -- 0:00:07
Average standard deviation of split frequencies: 0.008798
991000 -- [-1864.064] (-1863.990) (-1879.038) (-1858.300) * (-1871.588) [-1865.679] (-1878.384) (-1902.496) -- 0:00:06
992000 -- (-1868.303) (-1874.542) (-1874.641) [-1871.539] * (-1870.846) (-1868.707) [-1866.067] (-1889.147) -- 0:00:06
993000 -- (-1878.428) (-1881.472) (-1877.003) [-1864.724] * (-1868.252) (-1878.816) (-1866.369) [-1881.325] -- 0:00:05
994000 -- [-1874.462] (-1876.562) (-1881.416) (-1860.021) * (-1892.057) [-1862.499] (-1883.461) (-1882.368) -- 0:00:04
995000 -- [-1871.563] (-1861.266) (-1897.495) (-1868.915) * [-1867.712] (-1887.072) (-1861.914) (-1879.730) -- 0:00:03
Average standard deviation of split frequencies: 0.008655
996000 -- (-1885.034) (-1882.325) (-1882.121) [-1859.118] * (-1867.116) (-1885.228) [-1861.851] (-1876.475) -- 0:00:03
997000 -- (-1877.539) (-1873.181) (-1878.250) [-1883.548] * (-1878.266) (-1888.289) [-1871.019] (-1876.349) -- 0:00:02
998000 -- [-1864.049] (-1877.000) (-1882.492) (-1888.545) * [-1858.383] (-1871.047) (-1876.277) (-1880.067) -- 0:00:01
999000 -- (-1892.019) [-1864.230] (-1884.624) (-1868.052) * (-1869.259) (-1870.584) (-1874.622) [-1874.410] -- 0:00:00
1000000 -- (-1875.724) (-1879.893) (-1896.521) [-1877.159] * (-1886.956) (-1872.749) [-1869.655] (-1881.254) -- 0:00:00
Average standard deviation of split frequencies: 0.008778
Analysis completed in 12 mins 46 seconds
Analysis used 764.99 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -1846.95
Likelihood of best state for "cold" chain of run 2 was -1847.24
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
57.2 % ( 43 %) Dirichlet(Revmat{all})
71.9 % ( 63 %) Slider(Revmat{all})
26.0 % ( 27 %) Dirichlet(Pi{all})
27.7 % ( 31 %) Slider(Pi{all})
77.7 % ( 53 %) Multiplier(Alpha{1,2})
67.8 % ( 35 %) Multiplier(Alpha{3})
87.1 % ( 78 %) Slider(Pinvar{all})
64.7 % ( 63 %) ExtSPR(Tau{all},V{all})
54.3 % ( 55 %) ExtTBR(Tau{all},V{all})
69.5 % ( 70 %) NNI(Tau{all},V{all})
43.7 % ( 46 %) ParsSPR(Tau{all},V{all})
27.4 % ( 32 %) Multiplier(V{all})
72.0 % ( 70 %) Nodeslider(V{all})
25.6 % ( 16 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
58.3 % ( 52 %) Dirichlet(Revmat{all})
71.5 % ( 64 %) Slider(Revmat{all})
25.9 % ( 25 %) Dirichlet(Pi{all})
27.6 % ( 26 %) Slider(Pi{all})
76.9 % ( 49 %) Multiplier(Alpha{1,2})
67.1 % ( 39 %) Multiplier(Alpha{3})
86.9 % ( 77 %) Slider(Pinvar{all})
65.4 % ( 68 %) ExtSPR(Tau{all},V{all})
54.6 % ( 55 %) ExtTBR(Tau{all},V{all})
69.6 % ( 65 %) NNI(Tau{all},V{all})
43.8 % ( 42 %) ParsSPR(Tau{all},V{all})
27.4 % ( 25 %) Multiplier(V{all})
71.9 % ( 69 %) Nodeslider(V{all})
25.7 % ( 21 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.52 0.21 0.07
2 | 166506 0.54 0.23
3 | 166667 166954 0.56
4 | 166492 166037 167344
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.52 0.21 0.07
2 | 165974 0.55 0.24
3 | 167228 167351 0.56
4 | 165873 166996 166578
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -1863.14
| 2 |
| |
| |
| 2 1 2 |
| 2 |
| 1 22 1 1 1 |
| 1 2*1 1 1 1 * 2 |
|22 1 2 21 11 22 *2 1 2 2 21 2|
| 2 1 1 2 22 1 * *1 11 12 |
|1 2 2 * *1 122 2 * 2 2 2 1 2 2 2 2 |
| 2 2 1 2 1 2 * 1 1 2 1 |
| 2 1 1 1 11 * 1 2 1 2 2 2 2 1|
| 11 1 1 |
| 1 1 1 1 1 |
| 2 2 1 2 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -1872.03
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1859.01 -1884.63
2 -1857.15 -1882.63
--------------------------------------
TOTAL -1857.70 -1884.06
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.107596 0.000191 0.082229 0.135381 0.106466 1440.40 1470.70 1.000
r(A<->C){all} 0.072685 0.000978 0.020225 0.134386 0.069066 736.64 802.47 1.004
r(A<->G){all} 0.241763 0.002233 0.153562 0.335791 0.240157 656.15 708.68 1.000
r(A<->T){all} 0.031404 0.000264 0.004043 0.063136 0.029129 1014.05 1051.64 1.000
r(C<->G){all} 0.078784 0.001032 0.021943 0.141653 0.075751 477.46 520.40 1.001
r(C<->T){all} 0.381100 0.002832 0.275694 0.480473 0.380228 635.47 743.90 1.002
r(G<->T){all} 0.194265 0.001429 0.122526 0.266972 0.191604 606.32 651.95 1.000
pi(A){all} 0.235871 0.000186 0.210441 0.264507 0.235887 1027.67 1128.84 1.000
pi(C){all} 0.184749 0.000153 0.161905 0.210168 0.184510 919.20 996.61 1.000
pi(G){all} 0.237047 0.000196 0.211339 0.266437 0.236911 1017.46 1041.09 1.001
pi(T){all} 0.342333 0.000236 0.312316 0.372519 0.342701 928.33 1009.91 1.002
alpha{1,2} 0.942695 0.913947 0.000496 2.893835 0.648502 1250.55 1256.61 1.000
alpha{3} 1.376686 1.046723 0.109621 3.503814 1.113900 1189.02 1239.85 1.000
pinvar{all} 0.271966 0.025781 0.000109 0.545554 0.264760 840.70 966.38 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C65
2 -- C619
3 -- C295
4 -- C196
5 -- C93
6 -- C597
7 -- C208
8 -- C75
9 -- C651
10 -- C337
11 -- C545
12 -- C224
13 -- C60
14 -- C312
15 -- C628
16 -- C627
17 -- C389
18 -- C284
19 -- C117
20 -- C380
21 -- C68
22 -- C165
23 -- C129
24 -- C315
25 -- C493
26 -- C381
27 -- C584
28 -- C561
29 -- C411
30 -- C596
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
------------------------------------
1 -- .*****************************
2 -- .*............................
3 -- ..*...........................
4 -- ...*..........................
5 -- ....*.........................
6 -- .....*........................
7 -- ......*.......................
8 -- .......*......................
9 -- ........*.....................
10 -- .........*....................
11 -- ..........*...................
12 -- ...........*..................
13 -- ............*.................
14 -- .............*................
15 -- ..............*...............
16 -- ...............*..............
17 -- ................*.............
18 -- .................*............
19 -- ..................*...........
20 -- ...................*..........
21 -- ....................*.........
22 -- .....................*........
23 -- ......................*.......
24 -- .......................*......
25 -- ........................*.....
26 -- .........................*....
27 -- ..........................*...
28 -- ...........................*..
29 -- ............................*.
30 -- .............................*
31 -- ...**.*..*........**...*.*..*.
32 -- ......*...........*...........
33 -- ...*..*...........*......*....
34 -- ....*....*.........*...*....*.
35 -- ..*........*............*..*..
36 -- .**..*..*.********..**..*.**..
37 -- .**..*..*.********..**..*.**.*
38 -- ...*..*...........*...........
39 -- ............*....*............
40 -- .........*.........*...*....*.
41 -- ...*.....................*....
42 -- ..*........*..................
43 -- ...**.*..*........**..**.*..*.
44 -- ...........*............*.....
45 -- ........................*..*..
46 -- ...**.**.*........**..**.*..*.
47 -- .......*..............*.......
48 -- ...**.**.*........**...*.*..*.
49 -- ...........*............*..*..
50 -- ..*........................*..
51 -- .**..*.**.********..***.*.**.*
52 -- .**..*.**.********..**..*.**.*
53 -- ...........*...............*..
54 -- .******.**********************
55 -- ..*.....................*.....
56 -- ..*.....................*..*..
57 -- ..*........*............*.....
58 -- .*********************.*******
59 -- ..*........*...............*..
60 -- .******.**************.*******
61 -- .**..*..*.********..***.*.**.*
62 -- ...................*...*......
63 -- .........*.........*..........
64 -- .......................*....*.
65 -- .........*.............*......
66 -- .........*..................*.
67 -- ...................*........*.
68 -- ......*...........*......*....
69 -- ....*....*....................
70 -- .........*.........*........*.
71 -- .........*.........*...*......
72 -- ...................*...*....*.
73 -- ....*....*.............*....*.
74 -- ....*....*.........*........*.
75 -- .........*.............*....*.
76 -- ....*....*.........*...*......
77 -- ....*..............*..........
78 -- ....*.......................*.
79 -- ....*..............*...*....*.
------------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
31 3002 1.000000 0.000000 1.000000 1.000000 2
32 3002 1.000000 0.000000 1.000000 1.000000 2
33 3001 0.999667 0.000471 0.999334 1.000000 2
34 2908 0.968688 0.011306 0.960693 0.976682 2
35 2907 0.968354 0.009893 0.961359 0.975350 2
36 2907 0.968354 0.001413 0.967355 0.969354 2
37 2898 0.965356 0.009422 0.958694 0.972019 2
38 1847 0.615256 0.015546 0.604264 0.626249 2
39 1593 0.530646 0.030621 0.508994 0.552298 2
40 980 0.326449 0.017901 0.313791 0.339107 2
41 776 0.258494 0.016959 0.246502 0.270486 2
42 631 0.210193 0.001413 0.209194 0.211193 2
43 622 0.207195 0.003769 0.204530 0.209860 2
44 621 0.206862 0.001413 0.205863 0.207861 2
45 616 0.205197 0.003769 0.202532 0.207861 2
46 613 0.204197 0.017430 0.191872 0.216522 2
47 608 0.202532 0.005653 0.198534 0.206529 2
48 607 0.202199 0.009893 0.195203 0.209194 2
49 607 0.202199 0.014604 0.191872 0.212525 2
50 599 0.199534 0.017430 0.187209 0.211859 2
51 596 0.198534 0.007537 0.193205 0.203864 2
52 595 0.198201 0.024968 0.180546 0.215856 2
53 592 0.197202 0.002827 0.195203 0.199201 2
54 589 0.196203 0.008951 0.189873 0.202532 2
55 583 0.194204 0.011777 0.185876 0.202532 2
56 582 0.193871 0.008480 0.187875 0.199867 2
57 576 0.191872 0.011306 0.183877 0.199867 2
58 575 0.191539 0.008009 0.185876 0.197202 2
59 570 0.189873 0.013191 0.180546 0.199201 2
60 558 0.185876 0.002827 0.183877 0.187875 2
61 548 0.182545 0.000942 0.181879 0.183211 2
62 494 0.164557 0.016959 0.152565 0.176549 2
63 489 0.162891 0.001413 0.161892 0.163891 2
64 480 0.159893 0.011306 0.151899 0.167888 2
65 453 0.150899 0.012719 0.141905 0.159893 2
66 443 0.147568 0.008951 0.141239 0.153897 2
67 442 0.147235 0.005653 0.143238 0.151233 2
68 379 0.126249 0.001413 0.125250 0.127249 2
69 359 0.119587 0.010835 0.111925 0.127249 2
70 351 0.116922 0.015546 0.105929 0.127915 2
71 347 0.115590 0.004240 0.112592 0.118588 2
72 342 0.113924 0.002827 0.111925 0.115923 2
73 342 0.113924 0.000942 0.113258 0.114590 2
74 333 0.110926 0.000471 0.110593 0.111259 2
75 331 0.110260 0.011777 0.101932 0.118588 2
76 320 0.106596 0.013191 0.097268 0.115923 2
77 318 0.105929 0.006595 0.101266 0.110593 2
78 315 0.104930 0.009893 0.097935 0.111925 2
79 296 0.098601 0.005653 0.094604 0.102598 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.001434 0.000001 0.000022 0.003505 0.001168 1.000 2
length{all}[2] 0.000710 0.000001 0.000000 0.002132 0.000470 1.000 2
length{all}[3] 0.000720 0.000001 0.000000 0.002162 0.000500 1.000 2
length{all}[4] 0.008140 0.000007 0.003460 0.013033 0.007857 1.002 2
length{all}[5] 0.001261 0.000001 0.000001 0.003302 0.001014 1.000 2
length{all}[6] 0.000692 0.000000 0.000000 0.001981 0.000496 1.000 2
length{all}[7] 0.000717 0.000001 0.000000 0.002134 0.000496 1.000 2
length{all}[8] 0.002087 0.000001 0.000252 0.004457 0.001866 1.001 2
length{all}[9] 0.001455 0.000001 0.000026 0.003579 0.001215 1.000 2
length{all}[10] 0.002861 0.000002 0.000518 0.005786 0.002592 1.000 2
length{all}[11] 0.000724 0.000001 0.000000 0.002229 0.000500 1.000 2
length{all}[12] 0.000719 0.000001 0.000000 0.002148 0.000502 1.000 2
length{all}[13] 0.004725 0.000004 0.001375 0.008685 0.004444 1.000 2
length{all}[14] 0.019218 0.000019 0.011062 0.027791 0.018870 1.002 2
length{all}[15] 0.000718 0.000001 0.000000 0.002186 0.000503 1.000 2
length{all}[16] 0.000698 0.000001 0.000000 0.002115 0.000472 1.000 2
length{all}[17] 0.001429 0.000001 0.000017 0.003428 0.001184 1.000 2
length{all}[18] 0.002493 0.000002 0.000280 0.005324 0.002224 1.000 2
length{all}[19] 0.000705 0.000001 0.000000 0.002129 0.000501 1.000 2
length{all}[20] 0.001447 0.000001 0.000048 0.003451 0.001226 1.000 2
length{all}[21] 0.000683 0.000000 0.000000 0.002012 0.000465 1.000 2
length{all}[22] 0.001444 0.000001 0.000012 0.003484 0.001208 1.001 2
length{all}[23] 0.001444 0.000001 0.000022 0.003372 0.001217 1.000 2
length{all}[24] 0.000711 0.000001 0.000000 0.002107 0.000502 1.000 2
length{all}[25] 0.000720 0.000001 0.000000 0.002191 0.000501 1.000 2
length{all}[26] 0.004947 0.000004 0.001569 0.008997 0.004699 1.000 2
length{all}[27] 0.000709 0.000000 0.000000 0.002142 0.000493 1.000 2
length{all}[28] 0.000706 0.000000 0.000001 0.002113 0.000501 1.000 2
length{all}[29] 0.000731 0.000001 0.000000 0.002173 0.000500 1.000 2
length{all}[30] 0.001481 0.000001 0.000048 0.003499 0.001264 1.000 2
length{all}[31] 0.003406 0.000003 0.000887 0.007123 0.003115 1.000 2
length{all}[32] 0.012699 0.000011 0.006373 0.019122 0.012382 1.000 2
length{all}[33] 0.003156 0.000003 0.000643 0.006403 0.002893 1.000 2
length{all}[34] 0.002182 0.000002 0.000184 0.004748 0.001947 1.000 2
length{all}[35] 0.001411 0.000001 0.000033 0.003489 0.001179 1.000 2
length{all}[36] 0.001472 0.000001 0.000032 0.003505 0.001256 1.000 2
length{all}[37] 0.001461 0.000001 0.000033 0.003398 0.001228 1.000 2
length{all}[38] 0.001370 0.000001 0.000000 0.003435 0.001111 1.003 2
length{all}[39] 0.001424 0.000001 0.000046 0.003442 0.001163 1.000 2
length{all}[40] 0.001200 0.000001 0.000002 0.003211 0.000942 1.000 2
length{all}[41] 0.001254 0.000001 0.000003 0.003268 0.000987 0.999 2
length{all}[42] 0.000746 0.000001 0.000000 0.002124 0.000519 1.001 2
length{all}[43] 0.000731 0.000000 0.000002 0.002275 0.000502 0.998 2
length{all}[44] 0.000721 0.000001 0.000001 0.002164 0.000488 1.001 2
length{all}[45] 0.000714 0.000000 0.000000 0.002122 0.000530 1.004 2
length{all}[46] 0.000672 0.000000 0.000000 0.001891 0.000488 0.998 2
length{all}[47] 0.000762 0.000001 0.000001 0.002262 0.000566 0.998 2
length{all}[48] 0.000696 0.000001 0.000000 0.002188 0.000477 1.000 2
length{all}[49] 0.000721 0.000001 0.000000 0.002102 0.000507 0.998 2
length{all}[50] 0.000743 0.000001 0.000002 0.002160 0.000528 1.007 2
length{all}[51] 0.000720 0.000001 0.000000 0.002299 0.000488 1.000 2
length{all}[52] 0.000733 0.000000 0.000002 0.002138 0.000517 0.998 2
length{all}[53] 0.000713 0.000001 0.000000 0.002136 0.000475 0.998 2
length{all}[54] 0.000676 0.000000 0.000002 0.002047 0.000489 1.000 2
length{all}[55] 0.000719 0.000001 0.000000 0.002290 0.000441 1.001 2
length{all}[56] 0.000738 0.000001 0.000002 0.002184 0.000528 0.998 2
length{all}[57] 0.000718 0.000000 0.000002 0.002129 0.000518 1.002 2
length{all}[58] 0.000704 0.000000 0.000001 0.002001 0.000517 1.004 2
length{all}[59] 0.000735 0.000001 0.000006 0.002307 0.000517 0.998 2
length{all}[60] 0.000693 0.000000 0.000003 0.002052 0.000487 1.000 2
length{all}[61] 0.000759 0.000001 0.000001 0.002286 0.000563 0.999 2
length{all}[62] 0.000691 0.000000 0.000000 0.002099 0.000466 0.999 2
length{all}[63] 0.000702 0.000000 0.000001 0.002088 0.000490 0.999 2
length{all}[64] 0.000753 0.000001 0.000001 0.002313 0.000512 0.999 2
length{all}[65] 0.000695 0.000000 0.000000 0.002072 0.000481 0.998 2
length{all}[66] 0.000679 0.000001 0.000001 0.002127 0.000459 1.001 2
length{all}[67] 0.000789 0.000001 0.000003 0.002394 0.000525 0.998 2
length{all}[68] 0.000703 0.000001 0.000003 0.002219 0.000436 1.000 2
length{all}[69] 0.000756 0.000001 0.000000 0.002092 0.000541 0.999 2
length{all}[70] 0.000660 0.000000 0.000000 0.001968 0.000429 0.997 2
length{all}[71] 0.000759 0.000001 0.000001 0.002579 0.000472 0.998 2
length{all}[72] 0.000724 0.000001 0.000001 0.002182 0.000468 0.999 2
length{all}[73] 0.000669 0.000000 0.000001 0.001845 0.000468 1.000 2
length{all}[74] 0.000709 0.000001 0.000001 0.002242 0.000486 0.997 2
length{all}[75] 0.000717 0.000000 0.000000 0.001966 0.000514 0.997 2
length{all}[76] 0.000705 0.000000 0.000001 0.002194 0.000479 1.002 2
length{all}[77] 0.000748 0.000001 0.000000 0.002217 0.000490 0.999 2
length{all}[78] 0.000702 0.000000 0.000001 0.001985 0.000475 0.998 2
length{all}[79] 0.000755 0.000000 0.000002 0.002199 0.000551 0.999 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.008778
Maximum standard deviation of split frequencies = 0.030621
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.007
Clade credibility values:
/--------------------------------------------------------------------- C65 (1)
|
|--------------------------------------------------------------------- C75 (8)
|
|--------------------------------------------------------------------- C129 (23)
|
| /---------------------------- C196 (4)
| |
| /-----62-----+ /-------------- C208 (7)
| | \-----100-----+
| /-----100-----+ \-------------- C117 (19)
| | |
| | \----------------------------------------- C381 (26)
| |
|-----100-----+ /-------------- C93 (5)
| | |
| | |-------------- C337 (10)
| | |
| \-------------------97-------------------+-------------- C380 (20)
| |
| |-------------- C315 (24)
| |
| \-------------- C411 (29)
|
| /---------------------------- C619 (2)
+ |
| | /-------------- C295 (3)
| | |
| | |-------------- C224 (12)
| |------97-----+
| | |-------------- C493 (25)
| | |
| | \-------------- C561 (28)
| |
| |---------------------------- C597 (6)
| |
| |---------------------------- C651 (9)
| |
| |---------------------------- C545 (11)
| |
| /-----97-----+ /-------------- C60 (13)
| | |------53-----+
| | | \-------------- C284 (18)
| | |
| | |---------------------------- C312 (14)
| | |
| | |---------------------------- C628 (15)
| | |
| | |---------------------------- C627 (16)
\-------------97------------+ |
| |---------------------------- C389 (17)
| |
| |---------------------------- C68 (21)
| |
| |---------------------------- C165 (22)
| |
| \---------------------------- C584 (27)
|
\----------------------------------------- C596 (30)
Phylogram (based on average branch lengths):
/---- C65 (1)
|
|------ C75 (8)
|
|---- C129 (23)
|
| /------------------------- C196 (4)
| |
| /---+ /-- C208 (7)
| | \---------------------------------------+
| /--------+ \-- C117 (19)
| | |
| | \---------------- C381 (26)
| |
|---------+ /---- C93 (5)
| | |
| | |--------- C337 (10)
| | |
| \-----+---- C380 (20)
| |
| |-- C315 (24)
| |
| \-- C411 (29)
|
| /-- C619 (2)
+ |
| | /- C295 (3)
| | |
| | |- C224 (12)
| |---+
| | |- C493 (25)
| | |
| | \- C561 (28)
| |
| |-- C597 (6)
| |
| |---- C651 (9)
| |
| |-- C545 (11)
| |
| /---+ /-------------- C60 (13)
| | |---+
| | | \------- C284 (18)
| | |
| | |------------------------------------------------------------- C312 (14)
| | |
| | |-- C628 (15)
| | |
| | |-- C627 (16)
\---+ |
| |---- C389 (17)
| |
| |-- C68 (21)
| |
| |---- C165 (22)
| |
| \-- C584 (27)
|
\---- C596 (30)
|---------------| 0.005 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3002 trees sampled):
50 % credible set contains 1501 trees
90 % credible set contains 2702 trees
95 % credible set contains 2852 trees
99 % credible set contains 2972 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Thu Nov 17 16:36:45 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/LZW_nsp2_VIPR_ALG4_672096717_9284_10189_1_2012_02_China_Unknown_PEDV.result--
-- Starting log on Fri Nov 18 07:03:06 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/LZW_nsp2_VIPR_ALG4_672096717_9284_10189_1_2012_02_China_Unknown_PEDV.result/original_alignment/codeml,LZW_nsp2_VIPR_ALG4_672096717_9284_10189_1_2012_02_China_Unknown_PEDV.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C312 906 sites
reading seq# 2 C627 906 sites
reading seq# 3 C628 906 sites
reading seq# 4 C545 906 sites
reading seq# 5 C284 906 sites
reading seq# 6 C389 906 sites
reading seq# 7 C117 906 sites
reading seq# 8 C60 906 sites
reading seq# 9 C561 906 sites
reading seq#10 C380 906 sites
reading seq#11 C619 906 sites
reading seq#12 C65 906 sites
reading seq#13 C295 906 sites
reading seq#14 C68 906 sites
reading seq#15 C165 906 sites
reading seq#16 C93 906 sites
reading seq#17 C196 906 sites
reading seq#18 C597 906 sites
reading seq#19 C315 906 sites
reading seq#20 C129 906 sites
reading seq#21 C75 906 sites
reading seq#22 C208 906 sites
reading seq#23 C381 906 sites
reading seq#24 C584 906 sites
reading seq#25 C493 906 sites
reading seq#26 C337 906 sites
reading seq#27 C651 906 sites
reading seq#28 C596 906 sites
reading seq#29 C411 906 sites
reading seq#30 C224 906 sitesns = 30 ls = 906
Reading sequences, sequential format..
Reading seq # 1: C312
Reading seq # 2: C627
Reading seq # 3: C628
Reading seq # 4: C545
Reading seq # 5: C284
Reading seq # 6: C389
Reading seq # 7: C117
Reading seq # 8: C60
Reading seq # 9: C561
Reading seq #10: C380
Reading seq #11: C619
Reading seq #12: C65
Reading seq #13: C295
Reading seq #14: C68
Reading seq #15: C165
Reading seq #16: C93
Reading seq #17: C196
Reading seq #18: C597
Reading seq #19: C315
Reading seq #20: C129
Reading seq #21: C75
Reading seq #22: C208
Reading seq #23: C381
Reading seq #24: C584
Reading seq #25: C493
Reading seq #26: C337
Reading seq #27: C651
Reading seq #28: C596
Reading seq #29: C411
Reading seq #30: C224
Sequences read..
Counting site patterns.. 0:00
Compressing, 121 patterns at 302 / 302 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 121 patterns at 302 / 302 sites (100.0%), 0:00
Counting codons..
3480 bytes for distance
118096 bytes for conP
10648 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(12, 21, 20, (((17, (22, 7)), 23), (16, 26, 10, 19, 29)), ((11, (13, 30, 25, 9), 18, 27, 4, (8, 5), 1, 3, 2, 6, 14, 15, 24), 28)); MP score: 90
590480 bytes for conP, adjusted
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
38
0.024702 0.076468 0.062335 0.105315 0.046605 0.050385 0.092259 0.039062 0.024591 0.078954 0.021749 0.019040 0.085004 0.088829 0.031102 0.071237 0.097217 0.099155 0.050887 0.021054 0.023353 0.101204 0.103816 0.098863 0.062841 0.051971 0.084397 0.068123 0.096471 0.042670 0.068573 0.074501 0.109659 0.078078 0.020524 0.089415 0.049595 0.077653 0.038833 0.300000 0.845836 0.279789
ntime & nrate & np: 39 2 42
Bounds (np=42):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 15.092786
np = 42
lnL0 = -2331.291548
Iterating by ming2
Initial: fx= 2331.291548
x= 0.02470 0.07647 0.06233 0.10532 0.04660 0.05039 0.09226 0.03906 0.02459 0.07895 0.02175 0.01904 0.08500 0.08883 0.03110 0.07124 0.09722 0.09915 0.05089 0.02105 0.02335 0.10120 0.10382 0.09886 0.06284 0.05197 0.08440 0.06812 0.09647 0.04267 0.06857 0.07450 0.10966 0.07808 0.02052 0.08942 0.04959 0.07765 0.03883 0.30000 0.84584 0.27979
1 h-m-p 0.0000 0.0001 1434.6759 ++ 2164.560008 m 0.0001 47 | 1/42
2 h-m-p 0.0000 0.0000 3649.0973 ++ 2141.062321 m 0.0000 92 | 2/42
3 h-m-p 0.0000 0.0000 5116.0702 ++ 2011.882924 m 0.0000 137 | 3/42
4 h-m-p 0.0000 0.0000 72971.9981 ++ 1963.297664 m 0.0000 182 | 4/42
5 h-m-p 0.0000 0.0000 18485.8494 ++ 1942.266802 m 0.0000 227 | 5/42
6 h-m-p 0.0000 0.0000 42754.5650 ++ 1932.506825 m 0.0000 272 | 6/42
7 h-m-p 0.0000 0.0000 20216.9399 ++ 1909.350063 m 0.0000 317 | 7/42
8 h-m-p 0.0000 0.0000 66537.4961 ++ 1908.017224 m 0.0000 362 | 8/42
9 h-m-p 0.0000 0.0000 45905.8836 ++ 1906.428071 m 0.0000 407 | 9/42
10 h-m-p 0.0000 0.0000 7489.5425 ++ 1885.473732 m 0.0000 452 | 10/42
11 h-m-p 0.0000 0.0000 8303.7169 ++ 1872.601022 m 0.0000 497 | 11/42
12 h-m-p 0.0000 0.0000 1364.4565 ++ 1869.586209 m 0.0000 542 | 12/42
13 h-m-p 0.0000 0.0000 2483.8873 ++ 1866.998836 m 0.0000 587 | 13/42
14 h-m-p 0.0000 0.0000 8721.4399 ++ 1864.709086 m 0.0000 632 | 14/42
15 h-m-p 0.0000 0.0000 2422.4727 ++ 1861.228619 m 0.0000 677 | 15/42
16 h-m-p 0.0000 0.0001 429.9586 +YYYCYCYC 1855.516854 7 0.0001 733 | 15/42
17 h-m-p 0.0000 0.0001 676.9821 +YYYCCC 1850.109115 5 0.0001 786 | 15/42
18 h-m-p 0.0000 0.0001 460.3503 CCCC 1848.770124 3 0.0000 837 | 15/42
19 h-m-p 0.0000 0.0003 277.0892 +YYYCC 1843.747573 4 0.0002 888 | 15/42
20 h-m-p 0.0000 0.0002 485.6820 +YYCYYCCC 1835.579721 7 0.0001 944 | 15/42
21 h-m-p 0.0000 0.0001 490.8806 +YYYYC 1829.608743 4 0.0001 994 | 15/42
22 h-m-p 0.0000 0.0002 169.1709 +YYCCC 1827.947599 4 0.0001 1046 | 15/42
23 h-m-p 0.0001 0.0004 276.3568 +YYCCC 1823.833114 4 0.0003 1098 | 15/42
24 h-m-p 0.0000 0.0001 684.7889 YCYCCC 1821.596369 5 0.0001 1151 | 15/42
25 h-m-p 0.0000 0.0002 309.3574 CYC 1821.285866 2 0.0000 1199 | 15/42
26 h-m-p 0.0001 0.0010 99.4438 +YYC 1820.499015 2 0.0003 1247 | 15/42
27 h-m-p 0.0001 0.0009 196.2628 +YCCC 1818.164083 3 0.0004 1298 | 15/42
28 h-m-p 0.0001 0.0006 189.4134 YCYCCC 1816.220088 5 0.0003 1351 | 15/42
29 h-m-p 0.0000 0.0002 187.5456 ++ 1814.753241 m 0.0002 1396 | 15/42
30 h-m-p 0.0000 0.0000 70.5328
h-m-p: 1.73991119e-21 8.69955593e-21 7.05328446e+01 1814.753241
.. | 15/42
31 h-m-p 0.0000 0.0000 6577.6228 CYYYCCCC 1811.224348 7 0.0000 1494 | 15/42
32 h-m-p 0.0000 0.0000 794.1521 +YYCCCC 1803.658535 5 0.0000 1548 | 15/42
33 h-m-p 0.0000 0.0000 661.7977 +YYCCC 1800.193873 4 0.0000 1600 | 15/42
34 h-m-p 0.0000 0.0000 870.8368 +YCYCC 1798.782644 4 0.0000 1652 | 15/42
35 h-m-p 0.0000 0.0000 588.1938 CCCC 1798.508081 3 0.0000 1703 | 15/42
36 h-m-p 0.0000 0.0001 215.0209 CCCC 1798.215068 3 0.0000 1754 | 15/42
37 h-m-p 0.0000 0.0001 148.7033 YCC 1798.116380 2 0.0000 1802 | 15/42
38 h-m-p 0.0000 0.0002 68.4485 YC 1798.086136 1 0.0000 1848 | 15/42
39 h-m-p 0.0000 0.0004 95.9760 +YCCC 1797.860937 3 0.0001 1899 | 15/42
40 h-m-p 0.0000 0.0001 788.3677 CC 1797.645760 1 0.0000 1946 | 15/42
41 h-m-p 0.0000 0.0002 312.8435 YCC 1797.491362 2 0.0000 1994 | 15/42
42 h-m-p 0.0000 0.0002 409.6781 YCCC 1797.166999 3 0.0000 2044 | 15/42
43 h-m-p 0.0000 0.0002 773.0956 CCC 1796.739288 2 0.0000 2093 | 15/42
44 h-m-p 0.0000 0.0001 946.1039 CCC 1796.571527 2 0.0000 2142 | 15/42
45 h-m-p 0.0000 0.0003 303.0970 YCC 1796.313215 2 0.0001 2190 | 15/42
46 h-m-p 0.0001 0.0003 257.7145 CCCC 1795.875205 3 0.0001 2241 | 15/42
47 h-m-p 0.0000 0.0000 1962.2381 CCC 1795.565341 2 0.0000 2290 | 15/42
48 h-m-p 0.0000 0.0004 699.4135 +CCCC 1794.155286 3 0.0001 2342 | 15/42
49 h-m-p 0.0000 0.0001 1351.6435 YCCCC 1793.326223 4 0.0000 2394 | 15/42
50 h-m-p 0.0001 0.0008 448.5220 CC 1792.572235 1 0.0001 2441 | 15/42
51 h-m-p 0.0001 0.0007 246.7709 CCC 1791.947976 2 0.0002 2490 | 15/42
52 h-m-p 0.0001 0.0004 102.3617 CCCC 1791.805445 3 0.0001 2541 | 15/42
53 h-m-p 0.0001 0.0037 88.7213 +CCC 1791.357654 2 0.0005 2591 | 15/42
54 h-m-p 0.0001 0.0005 204.0237 YYC 1791.205401 2 0.0001 2638 | 15/42
55 h-m-p 0.0001 0.0026 152.9916 ++YYCCC 1789.214740 4 0.0014 2691 | 15/42
56 h-m-p 0.0000 0.0002 1157.4068 YCCC 1788.508118 3 0.0001 2741 | 15/42
57 h-m-p 0.0002 0.0011 17.8209 C 1788.503056 0 0.0000 2786 | 15/42
58 h-m-p 0.0035 0.7325 0.2450 ++++ 1786.667537 m 0.7325 2833 | 15/42
59 h-m-p 0.1470 0.7351 0.3421 YCCCC 1785.464063 4 0.3604 2912 | 15/42
60 h-m-p 0.2433 1.2164 0.1696 YCYCCC 1785.091357 5 0.5669 2992 | 15/42
61 h-m-p 0.5711 3.5741 0.1684 YCC 1784.769763 2 1.1337 3067 | 15/42
62 h-m-p 0.6519 3.2596 0.1384 YCCC 1784.697592 3 0.4390 3144 | 15/42
63 h-m-p 0.6223 8.0000 0.0976 YC 1784.591430 1 1.2415 3217 | 15/42
64 h-m-p 1.6000 8.0000 0.0291 CCC 1784.549125 2 1.6598 3293 | 15/42
65 h-m-p 1.6000 8.0000 0.0067 YC 1784.510822 1 1.2651 3366 | 15/42
66 h-m-p 0.8860 8.0000 0.0096 +YCC 1784.437216 2 2.8441 3442 | 15/42
67 h-m-p 0.7708 8.0000 0.0353 YC 1784.409217 1 1.5102 3515 | 15/42
68 h-m-p 1.6000 8.0000 0.0047 CC 1784.404440 1 1.2869 3589 | 15/42
69 h-m-p 1.6000 8.0000 0.0008 YC 1784.403539 1 1.1712 3662 | 15/42
70 h-m-p 0.5062 8.0000 0.0018 YC 1784.403465 1 1.1464 3735 | 15/42
71 h-m-p 1.6000 8.0000 0.0000 Y 1784.403456 0 1.1456 3807 | 15/42
72 h-m-p 0.8339 8.0000 0.0000 C 1784.403454 0 1.2969 3879 | 15/42
73 h-m-p 1.6000 8.0000 0.0000 C 1784.403454 0 1.4827 3951 | 15/42
74 h-m-p 1.6000 8.0000 0.0000 C 1784.403454 0 1.3257 4023 | 15/42
75 h-m-p 1.6000 8.0000 0.0000 C 1784.403454 0 2.4328 4095 | 15/42
76 h-m-p 1.6000 8.0000 0.0000 -Y 1784.403454 0 0.1000 4168 | 15/42
77 h-m-p 0.1195 8.0000 0.0000 ------------Y 1784.403454 0 0.0000 4252
Out..
lnL = -1784.403454
4253 lfun, 12759 eigenQcodon, 331734 P(t)
end of tree file.
Time used: 2:03
Model 2: PositiveSelection
TREE # 1
(12, 21, 20, (((17, (22, 7)), 23), (16, 26, 10, 19, 29)), ((11, (13, 30, 25, 9), 18, 27, 4, (8, 5), 1, 3, 2, 6, 14, 15, 24), 28)); MP score: 90
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
38
0.084360 0.059188 0.044125 0.099906 0.042159 0.105812 0.063283 0.021006 0.078080 0.058824 0.022836 0.066801 0.099823 0.079688 0.071999 0.014707 0.094821 0.011969 0.092639 0.070914 0.091715 0.049563 0.060105 0.095995 0.020155 0.039595 0.085999 0.101893 0.079895 0.062175 0.091313 0.049987 0.105082 0.104196 0.033376 0.054921 0.084718 0.019360 0.085045 2.240230 1.438776 0.426002 0.226501 1.376922
ntime & nrate & np: 39 3 44
Bounds (np=44):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 5.881579
np = 44
lnL0 = -2239.005457
Iterating by ming2
Initial: fx= 2239.005457
x= 0.08436 0.05919 0.04413 0.09991 0.04216 0.10581 0.06328 0.02101 0.07808 0.05882 0.02284 0.06680 0.09982 0.07969 0.07200 0.01471 0.09482 0.01197 0.09264 0.07091 0.09171 0.04956 0.06010 0.09600 0.02016 0.03959 0.08600 0.10189 0.07989 0.06218 0.09131 0.04999 0.10508 0.10420 0.03338 0.05492 0.08472 0.01936 0.08504 2.24023 1.43878 0.42600 0.22650 1.37692
1 h-m-p 0.0000 0.0001 1259.6855 ++ 2130.962403 m 0.0001 49 | 1/44
2 h-m-p 0.0000 0.0000 3125.8824 ++ 2104.720735 m 0.0000 96 | 2/44
3 h-m-p 0.0000 0.0000 11740.7275 ++ 2100.687735 m 0.0000 143 | 3/44
4 h-m-p 0.0000 0.0000 7374.0619 ++ 2018.110675 m 0.0000 190 | 4/44
5 h-m-p 0.0000 0.0001 1050.8526 ++ 1984.377639 m 0.0001 237 | 5/44
6 h-m-p 0.0000 0.0001 659.4354 ++ 1970.047137 m 0.0001 284 | 6/44
7 h-m-p 0.0000 0.0000 824.7835 ++ 1957.641373 m 0.0000 331 | 7/44
8 h-m-p 0.0000 0.0000 371.3838 ++ 1957.066402 m 0.0000 378 | 8/44
9 h-m-p 0.0000 0.0000 260087.2511 ++ 1938.694954 m 0.0000 425 | 9/44
10 h-m-p 0.0000 0.0000 24312.0968 ++ 1925.205835 m 0.0000 472 | 10/44
11 h-m-p 0.0000 0.0000 12651.0108 ++ 1902.625518 m 0.0000 519 | 11/44
12 h-m-p 0.0000 0.0000 4457.4701 ++ 1902.583103 m 0.0000 566 | 12/44
13 h-m-p 0.0000 0.0000 6446.9705 ++ 1897.205388 m 0.0000 613 | 13/44
14 h-m-p 0.0000 0.0000 1678.3339 ++ 1895.353358 m 0.0000 660 | 14/44
15 h-m-p 0.0000 0.0000 899.9238 ++ 1894.707636 m 0.0000 707 | 15/44
16 h-m-p 0.0000 0.0001 805.2278 ++ 1853.176822 m 0.0001 754 | 15/44
17 h-m-p 0.0000 0.0000 1395.5500 YCYCCC 1851.835277 5 0.0000 809 | 15/44
18 h-m-p 0.0000 0.0000 2133.4291 +YCCC 1850.781895 3 0.0000 862 | 15/44
19 h-m-p 0.0000 0.0000 373.0905 YCCCC 1850.385270 4 0.0000 916 | 15/44
20 h-m-p 0.0000 0.0000 757.4236 +YYCCCC 1848.951545 5 0.0000 972 | 15/44
21 h-m-p 0.0000 0.0000 3025.5506 YCYCCC 1847.928474 5 0.0000 1027 | 15/44
22 h-m-p 0.0000 0.0000 747.9120 YCCCC 1847.248192 4 0.0000 1081 | 15/44
23 h-m-p 0.0000 0.0001 1089.6844 +YCYCCC 1844.079807 5 0.0000 1137 | 15/44
24 h-m-p 0.0000 0.0000 434.2501 CCCC 1843.760429 3 0.0000 1190 | 15/44
25 h-m-p 0.0000 0.0000 342.4014 +YCYCCC 1842.658126 5 0.0000 1246 | 15/44
26 h-m-p 0.0000 0.0000 1368.8071 +YCC 1841.277622 2 0.0000 1297 | 15/44
27 h-m-p 0.0000 0.0000 1093.4403 YCCCC 1840.392409 4 0.0000 1351 | 15/44
28 h-m-p 0.0000 0.0001 331.0182 CCCC 1839.817416 3 0.0000 1404 | 15/44
29 h-m-p 0.0000 0.0002 229.0394 CYCCC 1839.259047 4 0.0001 1458 | 15/44
30 h-m-p 0.0001 0.0004 221.6754 +YYCCC 1837.919451 4 0.0002 1512 | 15/44
31 h-m-p 0.0001 0.0006 153.1948 +YYCCCC 1835.949712 5 0.0004 1568 | 15/44
32 h-m-p 0.0000 0.0000 3540.7440 +YYCYCC 1833.421695 5 0.0000 1623 | 15/44
33 h-m-p 0.0001 0.0006 301.2104 +YYCYCC 1829.922331 5 0.0004 1678 | 15/44
34 h-m-p 0.0019 0.0096 42.5422 +YYYCCC 1818.744260 5 0.0073 1733 | 15/44
35 h-m-p 0.0024 0.0118 37.3159 +CYCYYYYYYY 1798.918123 10 0.0112 1792 | 15/44
36 h-m-p 0.0014 0.0070 10.0189 YCYCCC 1798.644900 5 0.0033 1847 | 15/44
37 h-m-p 0.0107 0.2415 3.0826 ++YYYYYY 1791.977374 5 0.1711 1901 | 15/44
38 h-m-p 0.0529 0.2644 0.4280 +YYCYCC 1788.331611 5 0.1797 1956 | 15/44
39 h-m-p 0.0740 0.3702 0.5696 +YYCCCC 1787.061644 5 0.2338 2041 | 15/44
40 h-m-p 0.0610 0.3052 1.0009 YCCCC 1786.072110 4 0.1530 2124 | 15/44
41 h-m-p 0.2044 1.0222 0.5373 CYC 1785.639009 2 0.2117 2174 | 15/44
42 h-m-p 0.2810 1.9640 0.4048 YCCC 1785.041135 3 0.4759 2255 | 15/44
43 h-m-p 1.2210 7.9741 0.1578 CCC 1784.790755 2 1.4137 2335 | 15/44
44 h-m-p 0.8341 5.6011 0.2674 CYC 1784.679546 2 0.7608 2414 | 15/44
45 h-m-p 0.7044 8.0000 0.2888 CCC 1784.632511 2 0.5393 2494 | 15/44
46 h-m-p 0.9987 8.0000 0.1560 CCC 1784.545678 2 1.5945 2574 | 15/44
47 h-m-p 1.5536 8.0000 0.1601 YC 1784.492615 1 0.9985 2651 | 15/44
48 h-m-p 1.6000 8.0000 0.0683 C 1784.473014 0 1.5662 2727 | 15/44
49 h-m-p 1.6000 8.0000 0.0560 YC 1784.460538 1 2.8933 2804 | 15/44
50 h-m-p 1.6000 8.0000 0.0799 CC 1784.451076 1 1.8399 2882 | 15/44
51 h-m-p 1.5407 8.0000 0.0955 C 1784.443535 0 1.5393 2958 | 15/44
52 h-m-p 1.6000 8.0000 0.0581 YC 1784.438321 1 2.6495 3035 | 15/44
53 h-m-p 1.6000 8.0000 0.0832 YC 1784.430468 1 3.2225 3112 | 15/44
54 h-m-p 1.6000 8.0000 0.1117 +YC 1784.420113 1 4.6503 3190 | 15/44
55 h-m-p 1.6000 8.0000 0.2414 CCC 1784.412010 2 2.1415 3270 | 15/44
56 h-m-p 1.6000 8.0000 0.0385 CC 1784.409768 1 0.5753 3348 | 15/44
57 h-m-p 0.1059 8.0000 0.2094 ++YC 1784.408036 1 1.2893 3427 | 15/44
58 h-m-p 1.6000 8.0000 0.0331 CC 1784.406979 1 2.5354 3505 | 15/44
59 h-m-p 0.6221 8.0000 0.1351 +YC 1784.406176 1 1.8103 3583 | 15/44
60 h-m-p 1.6000 8.0000 0.0434 YC 1784.405601 1 2.8027 3660 | 15/44
61 h-m-p 0.7277 8.0000 0.1672 +YC 1784.404858 1 2.2287 3738 | 15/44
62 h-m-p 1.6000 8.0000 0.0912 CC 1784.404333 1 2.2923 3816 | 15/44
63 h-m-p 0.9413 8.0000 0.2222 CC 1784.403977 1 1.6120 3894 | 15/44
64 h-m-p 1.6000 8.0000 0.0988 C 1784.403763 0 1.8394 3970 | 15/44
65 h-m-p 0.9329 8.0000 0.1948 CC 1784.403630 1 1.5474 4048 | 15/44
66 h-m-p 1.6000 8.0000 0.0903 C 1784.403537 0 2.0919 4124 | 15/44
67 h-m-p 1.0543 8.0000 0.1791 C 1784.403486 0 1.3526 4200 | 15/44
68 h-m-p 1.6000 8.0000 0.0761 C 1784.403465 0 1.6000 4276 | 15/44
69 h-m-p 1.0442 8.0000 0.1166 Y 1784.403449 0 1.9125 4352 | 15/44
70 h-m-p 1.6000 8.0000 0.0437 C 1784.403440 0 1.9901 4428 | 15/44
71 h-m-p 0.8152 8.0000 0.1067 Y 1784.403431 0 2.0213 4504 | 15/44
72 h-m-p 1.6000 8.0000 0.0549 C 1784.403426 0 2.2374 4580 | 15/44
73 h-m-p 1.4106 8.0000 0.0870 C 1784.403423 0 1.5913 4656 | 15/44
74 h-m-p 1.6000 8.0000 0.0275 C 1784.403423 0 1.6000 4732 | 15/44
75 h-m-p 0.8389 8.0000 0.0524 Y 1784.403422 0 1.4281 4808 | 15/44
76 h-m-p 1.6000 8.0000 0.0202 C 1784.403422 0 1.8647 4884 | 15/44
77 h-m-p 1.6000 8.0000 0.0036 Y 1784.403422 0 0.8209 4960 | 15/44
78 h-m-p 1.5374 8.0000 0.0019 Y 1784.403422 0 1.0129 5036 | 15/44
79 h-m-p 1.3667 8.0000 0.0014 C 1784.403422 0 1.8583 5112 | 15/44
80 h-m-p 1.6000 8.0000 0.0002 Y 1784.403422 0 3.7499 5188 | 15/44
81 h-m-p 0.3342 8.0000 0.0018 ++Y 1784.403422 0 3.5973 5266 | 15/44
82 h-m-p 1.6000 8.0000 0.0005 +Y 1784.403422 0 4.8737 5343 | 15/44
83 h-m-p 1.6000 8.0000 0.0012 ++ 1784.403422 m 8.0000 5419 | 15/44
84 h-m-p 1.6000 8.0000 0.0038 ++ 1784.403422 m 8.0000 5495 | 15/44
85 h-m-p 1.6000 8.0000 0.0120 ++ 1784.403420 m 8.0000 5571 | 15/44
86 h-m-p 0.7808 8.0000 0.1227 +Y 1784.403413 0 2.4876 5648 | 15/44
87 h-m-p 1.6000 8.0000 0.0597 Y 1784.403406 0 2.7264 5724 | 15/44
88 h-m-p 1.6000 8.0000 0.0493 C 1784.403405 0 1.3100 5800 | 15/44
89 h-m-p 1.6000 8.0000 0.0153 C 1784.403405 0 1.3034 5876 | 15/44
90 h-m-p 0.5639 8.0000 0.0354 C 1784.403405 0 0.7996 5952 | 15/44
91 h-m-p 1.6000 8.0000 0.0026 Y 1784.403405 0 1.0678 6028 | 15/44
92 h-m-p 0.7902 8.0000 0.0036 +Y 1784.403405 0 2.1987 6105 | 15/44
93 h-m-p 1.6000 8.0000 0.0038 ----Y 1784.403405 0 0.0016 6185 | 15/44
94 h-m-p 0.0160 8.0000 0.0141 -------C 1784.403405 0 0.0000 6268 | 15/44
95 h-m-p 0.0160 8.0000 0.0030 -----C 1784.403405 0 0.0000 6349 | 15/44
96 h-m-p 0.0160 8.0000 0.0001 -------------.. | 15/44
97 h-m-p 0.0023 1.1746 0.0058 ------------ | 15/44
98 h-m-p 0.0023 1.1746 0.0058 ------------
Out..
lnL = -1784.403405
6609 lfun, 26436 eigenQcodon, 773253 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -1793.229489 S = -1705.797457 -127.692250
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 121 patterns 6:48
did 20 / 121 patterns 6:48
did 30 / 121 patterns 6:48
did 40 / 121 patterns 6:48
did 50 / 121 patterns 6:48
did 60 / 121 patterns 6:48
did 70 / 121 patterns 6:48
did 80 / 121 patterns 6:48
did 90 / 121 patterns 6:48
did 100 / 121 patterns 6:49
did 110 / 121 patterns 6:49
did 120 / 121 patterns 6:49
did 121 / 121 patterns 6:49end of tree file.
Time used: 6:49
Model 7: beta
TREE # 1
(12, 21, 20, (((17, (22, 7)), 23), (16, 26, 10, 19, 29)), ((11, (13, 30, 25, 9), 18, 27, 4, (8, 5), 1, 3, 2, 6, 14, 15, 24), 28)); MP score: 90
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
38
0.035991 0.015890 0.094259 0.089667 0.041588 0.033646 0.011679 0.103921 0.035929 0.097267 0.066283 0.099491 0.037165 0.057765 0.067435 0.084020 0.073165 0.085418 0.074821 0.015508 0.056931 0.089546 0.043335 0.103479 0.105262 0.081923 0.091703 0.049889 0.080380 0.019800 0.062023 0.103224 0.109184 0.039431 0.012410 0.074218 0.109829 0.066090 0.059933 2.240392 0.466258 1.203210
ntime & nrate & np: 39 1 42
Bounds (np=42):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 9.165253
np = 42
lnL0 = -2224.613195
Iterating by ming2
Initial: fx= 2224.613195
x= 0.03599 0.01589 0.09426 0.08967 0.04159 0.03365 0.01168 0.10392 0.03593 0.09727 0.06628 0.09949 0.03716 0.05776 0.06743 0.08402 0.07317 0.08542 0.07482 0.01551 0.05693 0.08955 0.04333 0.10348 0.10526 0.08192 0.09170 0.04989 0.08038 0.01980 0.06202 0.10322 0.10918 0.03943 0.01241 0.07422 0.10983 0.06609 0.05993 2.24039 0.46626 1.20321
1 h-m-p 0.0000 0.0001 1195.6089 ++ 2133.820736 m 0.0001 89 | 1/42
2 h-m-p 0.0000 0.0000 4391.5592 ++ 2019.996366 m 0.0000 176 | 2/42
3 h-m-p 0.0000 0.0000 3778017.8365 ++ 2007.411411 m 0.0000 262 | 3/42
4 h-m-p 0.0000 0.0000 15119.0719 ++ 1989.118927 m 0.0000 347 | 4/42
5 h-m-p 0.0000 0.0000 46974.4616 ++ 1960.566302 m 0.0000 431 | 5/42
6 h-m-p 0.0000 0.0000 53165.5200 ++ 1899.840028 m 0.0000 514 | 6/42
7 h-m-p 0.0000 0.0000 6410.1266 ++ 1890.959476 m 0.0000 596 | 6/42
8 h-m-p 0.0000 0.0000 20226.8559 +CYCYCCC 1882.101974 6 0.0000 688 | 6/42
9 h-m-p 0.0000 0.0000 999.4352 ++ 1879.625759 m 0.0000 769 | 7/42
10 h-m-p 0.0000 0.0000 8997.7110 ++ 1879.585870 m 0.0000 850 | 7/42
11 h-m-p -0.0000 -0.0000 4291.5814
h-m-p: -0.00000000e+00 -0.00000000e+00 4.29158136e+03 1879.585870
.. | 7/42
12 h-m-p 0.0000 0.0000 176594.2706 CYCYYYC 1871.476081 6 0.0000 1015 | 7/42
13 h-m-p 0.0000 0.0000 1029.6771 ++ 1869.063716 m 0.0000 1095 | 8/42
14 h-m-p 0.0000 0.0000 5300.9557 ++ 1844.240682 m 0.0000 1175 | 9/42
15 h-m-p 0.0000 0.0000 20181.8891 ++ 1836.860441 m 0.0000 1254 | 10/42
16 h-m-p 0.0000 0.0000 15956.2624 ++ 1824.612852 m 0.0000 1332 | 11/42
17 h-m-p 0.0000 0.0000 9669.8126 ++ 1807.646312 m 0.0000 1409 | 12/42
18 h-m-p 0.0000 0.0000 4666.9758 ++ 1800.717352 m 0.0000 1485 | 13/42
19 h-m-p 0.0000 0.0000 3104.6979 ++ 1799.054769 m 0.0000 1560 | 14/42
20 h-m-p 0.0000 0.0000 1251.4641 ++ 1797.220472 m 0.0000 1634 | 15/42
21 h-m-p 0.0000 0.0001 153.8442 +YYYYYYC 1795.683651 6 0.0001 1714 | 15/42
22 h-m-p 0.0000 0.0001 392.5713 +YYYCCC 1793.297994 5 0.0001 1794 | 15/42
23 h-m-p 0.0000 0.0001 353.7482 YCCCC 1791.544516 4 0.0001 1873 | 15/42
24 h-m-p 0.0000 0.0002 125.5443 YCCCC 1790.711417 4 0.0001 1952 | 15/42
25 h-m-p 0.0000 0.0002 256.0602 CCCC 1789.954761 3 0.0000 2030 | 15/42
26 h-m-p 0.0000 0.0001 218.2654 YCYCCC 1789.325816 5 0.0000 2110 | 15/42
27 h-m-p 0.0000 0.0002 137.7572 CYCCC 1788.680722 4 0.0001 2189 | 15/42
28 h-m-p 0.0000 0.0002 135.8852 YCYCCC 1787.891282 5 0.0001 2269 | 15/42
29 h-m-p 0.0000 0.0000 441.3601 YCCCC 1787.535807 4 0.0000 2348 | 15/42
30 h-m-p 0.0001 0.0003 74.1834 CYC 1787.403546 2 0.0001 2423 | 15/42
31 h-m-p 0.0000 0.0004 97.9448 YCCC 1787.225291 3 0.0001 2500 | 15/42
32 h-m-p 0.0002 0.0009 47.0293 CC 1787.193915 1 0.0000 2574 | 15/42
33 h-m-p 0.0001 0.0019 42.8172 +CCC 1787.059746 2 0.0003 2651 | 15/42
34 h-m-p 0.0001 0.0007 133.2754 CCCC 1786.898752 3 0.0001 2729 | 15/42
35 h-m-p 0.0001 0.0027 147.7914 +CCCCC 1785.961672 4 0.0006 2810 | 15/42
36 h-m-p 0.0001 0.0005 677.1572 YCC 1785.702302 2 0.0000 2885 | 15/42
37 h-m-p 0.0001 0.0007 122.2795 YC 1785.638807 1 0.0001 2958 | 15/42
38 h-m-p 0.0003 0.0015 10.3725 YC 1785.636691 1 0.0000 3031 | 15/42
39 h-m-p 0.0003 0.0561 1.2099 +++YYCCCC 1785.259656 5 0.0223 3114 | 15/42
40 h-m-p 0.0410 0.2420 0.6580 YCC 1785.159342 2 0.0337 3189 | 15/42
41 h-m-p 0.0168 0.0840 1.3223 CCCC 1785.058491 3 0.0229 3267 | 15/42
42 h-m-p 0.0287 0.6287 1.0526 +CC 1784.725787 1 0.1420 3342 | 15/42
43 h-m-p 0.1022 0.5108 0.1219 YCCC 1784.617090 3 0.1819 3419 | 15/42
44 h-m-p 0.0722 3.8039 0.3070 +CCC 1784.562488 2 0.3766 3496 | 15/42
45 h-m-p 1.0595 8.0000 0.1091 YC 1784.550553 1 0.5079 3569 | 15/42
46 h-m-p 0.8983 8.0000 0.0617 YC 1784.544789 1 0.5577 3642 | 15/42
47 h-m-p 1.6000 8.0000 0.0139 YC 1784.543338 1 0.6560 3715 | 15/42
48 h-m-p 0.6212 8.0000 0.0146 YC 1784.542513 1 1.2699 3788 | 15/42
49 h-m-p 1.6000 8.0000 0.0103 CC 1784.541813 1 2.0492 3862 | 15/42
50 h-m-p 1.1438 8.0000 0.0184 YC 1784.540303 1 2.4407 3935 | 15/42
51 h-m-p 1.6000 8.0000 0.0202 C 1784.538226 0 1.7306 4007 | 15/42
52 h-m-p 1.6000 8.0000 0.0008 +YC 1784.532762 1 4.6094 4081 | 15/42
53 h-m-p 0.4973 8.0000 0.0079 ++YC 1784.507696 1 5.4025 4156 | 15/42
54 h-m-p 1.6000 8.0000 0.0133 YYC 1784.486072 2 1.2052 4230 | 15/42
55 h-m-p 0.7796 8.0000 0.0206 CC 1784.482666 1 0.9032 4304 | 15/42
56 h-m-p 1.6000 8.0000 0.0097 YC 1784.482235 1 0.7479 4377 | 15/42
57 h-m-p 1.6000 8.0000 0.0011 YC 1784.482135 1 1.1028 4450 | 15/42
58 h-m-p 1.6000 8.0000 0.0006 Y 1784.482121 0 0.8261 4522 | 15/42
59 h-m-p 0.8442 8.0000 0.0006 C 1784.482120 0 0.9169 4594 | 15/42
60 h-m-p 1.6000 8.0000 0.0000 Y 1784.482120 0 1.0773 4666 | 15/42
61 h-m-p 0.3026 8.0000 0.0000 +Y 1784.482120 0 0.8394 4739 | 15/42
62 h-m-p 1.6000 8.0000 0.0000 Y 1784.482120 0 0.8731 4811 | 15/42
63 h-m-p 1.6000 8.0000 0.0000 ---Y 1784.482120 0 0.0063 4886
Out..
lnL = -1784.482120
4887 lfun, 53757 eigenQcodon, 1905930 P(t)
end of tree file.
Time used: 18:37
Model 8: beta&w>1
TREE # 1
(12, 21, 20, (((17, (22, 7)), 23), (16, 26, 10, 19, 29)), ((11, (13, 30, 25, 9), 18, 27, 4, (8, 5), 1, 3, 2, 6, 14, 15, 24), 28)); MP score: 90
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
38
0.061464 0.066035 0.011494 0.078810 0.044409 0.031620 0.108367 0.100265 0.095970 0.043994 0.071863 0.029228 0.034614 0.092851 0.057059 0.023329 0.022630 0.047487 0.032119 0.057250 0.039600 0.062437 0.081611 0.031825 0.033913 0.053709 0.058941 0.027962 0.038233 0.062821 0.011346 0.010084 0.109878 0.100810 0.075887 0.058760 0.032031 0.039414 0.019868 2.241065 0.900000 0.972311 1.767317 1.300000
ntime & nrate & np: 39 2 44
Bounds (np=44):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 6.928535
np = 44
lnL0 = -2162.322690
Iterating by ming2
Initial: fx= 2162.322690
x= 0.06146 0.06604 0.01149 0.07881 0.04441 0.03162 0.10837 0.10026 0.09597 0.04399 0.07186 0.02923 0.03461 0.09285 0.05706 0.02333 0.02263 0.04749 0.03212 0.05725 0.03960 0.06244 0.08161 0.03182 0.03391 0.05371 0.05894 0.02796 0.03823 0.06282 0.01135 0.01008 0.10988 0.10081 0.07589 0.05876 0.03203 0.03941 0.01987 2.24106 0.90000 0.97231 1.76732 1.30000
1 h-m-p 0.0000 0.0001 2521.3622 ++ 2020.208682 m 0.0001 93 | 0/44
2 h-m-p 0.0000 0.0000 356701.3242 ++ 2004.197695 m 0.0000 184 | 1/44
3 h-m-p 0.0000 0.0000 1255.4847 ++ 2000.641660 m 0.0000 275 | 2/44
4 h-m-p 0.0000 0.0000 83596.4428 ++ 1978.479787 m 0.0000 365 | 3/44
5 h-m-p 0.0000 0.0000 438815.8789 ++ 1961.155732 m 0.0000 454 | 4/44
6 h-m-p 0.0000 0.0000 11679.2459 ++ 1952.817200 m 0.0000 542 | 5/44
7 h-m-p 0.0000 0.0000 2655.4647 ++ 1933.516653 m 0.0000 629 | 6/44
8 h-m-p 0.0000 0.0000 9182.9292 ++ 1915.439723 m 0.0000 715 | 7/44
9 h-m-p 0.0000 0.0000 7423.4929 ++ 1891.083449 m 0.0000 800 | 8/44
10 h-m-p 0.0000 0.0000 4507.4026 ++ 1883.293400 m 0.0000 884 | 9/44
11 h-m-p 0.0000 0.0000 7853.4107 ++ 1880.549726 m 0.0000 967 | 10/44
12 h-m-p 0.0000 0.0000 5107.8797 ++ 1875.189692 m 0.0000 1049 | 11/44
13 h-m-p 0.0000 0.0000 2594.5518 ++ 1851.772152 m 0.0000 1130 | 12/44
14 h-m-p 0.0000 0.0000 5597.1991 ++ 1848.231666 m 0.0000 1210 | 12/44
15 h-m-p -0.0000 -0.0000 4004.8628
h-m-p: -3.24239198e-23 -1.62119599e-22 4.00486279e+03 1848.231666
.. | 12/44
16 h-m-p 0.0000 0.0000 946.5792 ++ 1833.908880 m 0.0000 1365 | 13/44
17 h-m-p 0.0000 0.0000 919.5630 ++ 1829.071271 m 0.0000 1444 | 14/44
18 h-m-p 0.0000 0.0000 1804.8512 ++ 1823.527271 m 0.0000 1522 | 15/44
19 h-m-p 0.0000 0.0000 1012.6095 +YYCYC 1819.669037 4 0.0000 1605 | 15/44
20 h-m-p 0.0000 0.0000 891.2665 YCYCCC 1817.710356 5 0.0000 1689 | 15/44
21 h-m-p 0.0000 0.0001 378.4759 +YYCCC 1814.608251 4 0.0001 1772 | 15/44
22 h-m-p 0.0000 0.0000 1444.4489 CCCC 1813.065876 3 0.0000 1854 | 15/44
23 h-m-p 0.0000 0.0001 950.8001 YCCCCC 1810.196667 5 0.0000 1939 | 15/44
24 h-m-p 0.0000 0.0001 837.1242 +YCCCC 1808.345421 4 0.0000 2023 | 15/44
25 h-m-p 0.0000 0.0001 1221.6806 YCCCCC 1804.406980 5 0.0000 2108 | 15/44
26 h-m-p 0.0000 0.0000 596.7732 YCCCC 1803.990866 4 0.0000 2191 | 15/44
27 h-m-p 0.0000 0.0001 244.6232 CCCC 1803.572622 3 0.0000 2273 | 15/44
28 h-m-p 0.0000 0.0001 171.8814 CCCC 1803.386401 3 0.0000 2355 | 15/44
29 h-m-p 0.0000 0.0003 146.6875 YC 1803.080899 1 0.0001 2432 | 15/44
30 h-m-p 0.0001 0.0004 103.1970 CCCC 1802.874938 3 0.0001 2514 | 15/44
31 h-m-p 0.0000 0.0002 396.2764 +YYYC 1802.168751 3 0.0001 2594 | 15/44
32 h-m-p 0.0000 0.0000 1912.0400 ++ 1799.606959 m 0.0000 2670 | 16/44
33 h-m-p 0.0001 0.0003 552.5484 YCCCC 1799.220456 4 0.0001 2753 | 16/44
34 h-m-p 0.0000 0.0001 2059.0989 YCCCC 1798.652615 4 0.0000 2835 | 16/44
35 h-m-p 0.0000 0.0001 472.4136 CC 1798.605240 1 0.0000 2912 | 16/44
36 h-m-p 0.0001 0.0004 142.7027 YCC 1798.570285 2 0.0000 2990 | 16/44
37 h-m-p 0.0001 0.0011 82.8371 CYC 1798.530322 2 0.0001 3068 | 16/44
38 h-m-p 0.0000 0.0008 231.8399 ++YYCCC 1797.880742 4 0.0003 3151 | 16/44
39 h-m-p 0.0000 0.0001 6058.9634 +
QuantileBeta(0.15, 0.00500, 2.16859) = 1.215959e-160 2000 rounds
YCCCC 1795.973405 4 0.0000 3234 | 16/44
40 h-m-p 0.0000 0.0001 1311.5000 CYCCC 1795.455806 4 0.0000 3316 | 16/44
41 h-m-p 0.0002 0.0008 21.1971 CC 1795.450147 1 0.0000 3393 | 15/44
42 h-m-p 0.0000 0.0207 34.0996 ++CCCC 1795.159681 3 0.0006 3476 | 15/44
43 h-m-p 0.0071 0.2972 2.9331 ++CCCC 1792.636485 3 0.1467 3560 | 15/44
44 h-m-p 0.0172 0.0860 4.5661 ++ 1790.537590 m 0.0860 3636 | 15/44
45 h-m-p 0.0616 0.3081 1.4018 +YYYYCYCCC 1785.341665 8 0.2635 3724 | 15/44
46 h-m-p 0.2802 1.4009 0.2707 YCYCCC 1784.738871 5 0.6942 3808 | 15/44
47 h-m-p 0.2369 1.1843 0.5244 CC 1784.530971 1 0.2495 3886 | 15/44
48 h-m-p 0.2611 1.3056 0.2824 C 1784.480887 0 0.2611 3962 | 15/44
49 h-m-p 0.2966 1.4828 0.1310 YYC 1784.438925 2 0.2420 4040 | 15/44
50 h-m-p 0.4809 8.0000 0.0659 CC 1784.424488 1 0.7714 4118 | 15/44
51 h-m-p 1.2173 8.0000 0.0418 CC 1784.415736 1 1.0254 4196 | 15/44
52 h-m-p 0.7388 8.0000 0.0580 CC 1784.411867 1 0.5934 4274 | 15/44
53 h-m-p 0.7634 8.0000 0.0451 CC 1784.408409 1 1.1460 4352 | 15/44
54 h-m-p 1.5244 8.0000 0.0339 YC 1784.404781 1 2.5933 4429 | 15/44
55 h-m-p 1.6000 8.0000 0.0530 CC 1784.400239 1 2.4315 4507 | 15/44
56 h-m-p 1.6000 8.0000 0.0637 CCC 1784.394803 2 2.7263 4587 | 15/44
57 h-m-p 1.6000 8.0000 0.0681 CC 1784.388488 1 2.2574 4665 | 15/44
58 h-m-p 0.8277 5.3154 0.1859 YY 1784.385800 1 0.7313 4742 | 15/44
59 h-m-p 1.6000 8.0000 0.0519 YC 1784.384293 1 0.9753 4819 | 15/44
60 h-m-p 1.0405 8.0000 0.0487 CC 1784.383883 1 1.4554 4897 | 15/44
61 h-m-p 1.6000 8.0000 0.0081 Y 1784.383806 0 1.1603 4973 | 15/44
62 h-m-p 1.0210 8.0000 0.0092 C 1784.383795 0 1.1396 5049 | 15/44
63 h-m-p 1.6000 8.0000 0.0005 C 1784.383790 0 2.2469 5125 | 15/44
64 h-m-p 0.8174 8.0000 0.0012 +Y 1784.383782 0 4.4392 5202 | 15/44
65 h-m-p 1.3532 8.0000 0.0041 ++ 1784.383723 m 8.0000 5278 | 15/44
66 h-m-p 0.6485 8.0000 0.0505 +C 1784.383589 0 2.5938 5355 | 15/44
67 h-m-p 1.6000 8.0000 0.0463 +YC 1784.383259 1 4.0893 5433 | 15/44
68 h-m-p 1.6000 8.0000 0.0413 YC 1784.383143 1 1.0084 5510 | 15/44
69 h-m-p 0.5178 8.0000 0.0805 C 1784.383071 0 0.7926 5586 | 15/44
70 h-m-p 1.6000 8.0000 0.0093 Y 1784.383048 0 1.1707 5662 | 15/44
71 h-m-p 0.7971 8.0000 0.0137 C 1784.383045 0 1.1182 5738 | 15/44
72 h-m-p 1.6000 8.0000 0.0035 Y 1784.383044 0 1.1050 5814 | 15/44
73 h-m-p 1.6000 8.0000 0.0016 C 1784.383044 0 1.5760 5890 | 15/44
74 h-m-p 1.6000 8.0000 0.0001 C 1784.383044 0 1.3832 5966 | 15/44
75 h-m-p 1.1970 8.0000 0.0001 Y 1784.383044 0 2.1481 6042 | 15/44
76 h-m-p 1.6000 8.0000 0.0001 -C 1784.383044 0 0.0868 6119 | 15/44
77 h-m-p 0.1170 8.0000 0.0001 ---C 1784.383044 0 0.0005 6198 | 15/44
78 h-m-p 0.0160 8.0000 0.0006 -------C 1784.383044 0 0.0000 6281
Out..
lnL = -1784.383044
6282 lfun, 75384 eigenQcodon, 2694978 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -1791.931371 S = -1705.820675 -112.478065
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 121 patterns 36:15
did 20 / 121 patterns 36:15
did 30 / 121 patterns 36:15
did 40 / 121 patterns 36:15
did 50 / 121 patterns 36:16
did 60 / 121 patterns 36:16
did 70 / 121 patterns 36:16
did 80 / 121 patterns 36:17
did 90 / 121 patterns 36:17
did 100 / 121 patterns 36:17
did 110 / 121 patterns 36:17
did 120 / 121 patterns 36:18
did 121 / 121 patterns 36:18end of tree file.
Time used: 36:18
The loglikelihoods for models M1, M2, M7 and M8 are -1784.403454 -1784.403405 -1784.482120 -1784.383044 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
PEDV_10F_nsp2_VIPR_ALG4_761662529_9284_10189_1_2012_01_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
USA_Texas435_2014_nsp2_VIPR_ALG4_825144895_9239_10144_1_2014_11_18_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
USA_Wisconsin55_2013_nsp2_VIPR_ALG4_658130365_9249_10154_1_2013_11_03_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
USA_Minnesota306_2014_nsp2_VIPR_ALG4_825144573_9239_10144_1_2014_04_08_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
NW8_nsp2_VIPR_ALG4_ATY72311_1_9284_10189_1_2015_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
PEDV_MEX_JAL_01_2017_nsp2_VIPR_ALG4_AVU05366_1_9114_10019_1_2017_02_10_Mexico_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
GDS09_nsp2_VIPR_ALG4_QCQ20073_1_9284_10189_1_2014_08_01_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVL
CH_SCLS_2018_nsp2_VIPR_ALG4_AZL47221_1_9284_10189_1_2018_01_12_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
USA_Minnesota64_2013_nsp2_VIPR_ALG4_658130414_9249_10154_1_2013_11_19_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
PEDV_H3_Barcelona_Vic_nsp2_VIPR_ALG4_QKV43846_1_9288_10193_1_2019_01_07_Spain_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVL
USA_SouthDakota285_2014_nsp2_VIPR_ALG4_825144566_9239_10144_1_2014_04_02_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
CH_SCZY103_2017_nsp2_VIPR_ALG4_AZL47215_1_9284_10189_1_2017_12_01_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVL
PC177_nsp2_VIPR_ALG4_893707341_9273_10178_1_2013_12_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
CH_SXYL_2016_nsp2_VIPR_ALG4_ASY04642_1_9283_10188_1_2016_09_10_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
GD_B_nsp2_VIPR_ALG4_399227062_9284_10189_1_2012_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
COL_Cundinamarca03962_2014_nsp2_VIPR_ALG4_QGQ60245_1_9272_10177_1_2014_03_21_Colombia_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVL
IBT_VN_nsp2_VIPR_ALG4_QPX15727_1_9284_10189_1_2018_02_02_Viet_Nam_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
USA_NorthCarolina66_2013_nsp2_VIPR_ALG4_658130428_9249_10154_1_2013_11_23_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
PEDV_1453_Zaragoza_Tauste_nsp2_VIPR_ALG4_QKV43720_1_9249_10154_1_2014_04_24_Spain_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVL
GDS21_nsp2_VIPR_ALG4_QCQ19851_1_9284_10189_1_2014_01_09_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVL
CH_YNKM_8_2013_nsp2_VIPR_ALG4_575502657_9284_10189_1_2013_09_20_China_Unknown_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVL
JS2008_nsp2_VIPR_ALG4_459357910_9260_10165_1_2008_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVL
PEDV_JS_A_nsp2_VIPR_ALG4_AZS18877_1_9284_10189_1_2017_11_10_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
USA_Missouri177_2014_nsp2_VIPR_ALG4_825144510_9239_10144_1_2014_01_14_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
USA_Illinois97_2013_nsp2_VIPR_ALG4_658130617_9249_10154_1_2013_12_11_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
PEDV_2330_Orense_nsp2_VIPR_ALG4_QKV43840_1_9288_10193_1_2019_01_30_Spain_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVL
ZJU_G2_2013_nsp2_VIPR_ALG4_ANY27030_1_9284_10189_1_2013_11_14_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
USA_Nebraska348_2014_nsp2_VIPR_ALG4_825144545_9239_10144_1_2014_02_25_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSIIDYDYALSVL
PEDV_ROMANIA_L01329_K25_15_01_2015_nsp2_VIPR_ALG4_SNQ28013_1_9272_10177_1_NA_NA_Unknown_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVL
KGW_1_JPN_2014_nsp2_VIPR_ALG4_948549221_9226_10131_1_2014_04_Japan_Pig_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVL
************************************:************ **********
PEDV_10F_nsp2_VIPR_ALG4_761662529_9284_10189_1_2012_01_China_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYEGF
USA_Texas435_2014_nsp2_VIPR_ALG4_825144895_9239_10144_1_2014_11_18_USA_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGS
USA_Wisconsin55_2013_nsp2_VIPR_ALG4_658130365_9249_10154_1_2013_11_03_USA_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGS
USA_Minnesota306_2014_nsp2_VIPR_ALG4_825144573_9239_10144_1_2014_04_08_USA_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGS
NW8_nsp2_VIPR_ALG4_ATY72311_1_9284_10189_1_2015_China_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGS
PEDV_MEX_JAL_01_2017_nsp2_VIPR_ALG4_AVU05366_1_9114_10019_1_2017_02_10_Mexico_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGS
GDS09_nsp2_VIPR_ALG4_QCQ20073_1_9284_10189_1_2014_08_01_China_Swine_PEDV RLHNFSISSGNVFLGVVSATMRGALLQIKVNQNNVHTPKYTHRTVRPGESFNILACYDGA
CH_SCLS_2018_nsp2_VIPR_ALG4_AZL47221_1_9284_10189_1_2018_01_12_China_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVKPGESFNILACYDGS
USA_Minnesota64_2013_nsp2_VIPR_ALG4_658130414_9249_10154_1_2013_11_19_USA_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGS
PEDV_H3_Barcelona_Vic_nsp2_VIPR_ALG4_QKV43846_1_9288_10193_1_2019_01_07_Spain_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGA
USA_SouthDakota285_2014_nsp2_VIPR_ALG4_825144566_9239_10144_1_2014_04_02_USA_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGS
CH_SCZY103_2017_nsp2_VIPR_ALG4_AZL47215_1_9284_10189_1_2017_12_01_China_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGA
PC177_nsp2_VIPR_ALG4_893707341_9273_10178_1_2013_12_USA_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGS
CH_SXYL_2016_nsp2_VIPR_ALG4_ASY04642_1_9283_10188_1_2016_09_10_China_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGS
GD_B_nsp2_VIPR_ALG4_399227062_9284_10189_1_2012_China_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGS
COL_Cundinamarca03962_2014_nsp2_VIPR_ALG4_QGQ60245_1_9272_10177_1_2014_03_21_Colombia_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGA
IBT_VN_nsp2_VIPR_ALG4_QPX15727_1_9284_10189_1_2018_02_02_Viet_Nam_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGA
USA_NorthCarolina66_2013_nsp2_VIPR_ALG4_658130428_9249_10154_1_2013_11_23_USA_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGS
PEDV_1453_Zaragoza_Tauste_nsp2_VIPR_ALG4_QKV43720_1_9249_10154_1_2014_04_24_Spain_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGA
GDS21_nsp2_VIPR_ALG4_QCQ19851_1_9284_10189_1_2014_01_09_China_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGA
CH_YNKM_8_2013_nsp2_VIPR_ALG4_575502657_9284_10189_1_2013_09_20_China_Unknown_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGA
JS2008_nsp2_VIPR_ALG4_459357910_9260_10165_1_2008_China_Swine_PEDV RLHNFSISSGNVFLGVVSATMRGALLQIKVNQNNVHTPKYTHRTVRPGESFNILACYDGA
PEDV_JS_A_nsp2_VIPR_ALG4_AZS18877_1_9284_10189_1_2017_11_10_China_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGA
USA_Missouri177_2014_nsp2_VIPR_ALG4_825144510_9239_10144_1_2014_01_14_USA_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGS
USA_Illinois97_2013_nsp2_VIPR_ALG4_658130617_9249_10154_1_2013_12_11_USA_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGS
PEDV_2330_Orense_nsp2_VIPR_ALG4_QKV43840_1_9288_10193_1_2019_01_30_Spain_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGA
ZJU_G2_2013_nsp2_VIPR_ALG4_ANY27030_1_9284_10189_1_2013_11_14_China_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGS
USA_Nebraska348_2014_nsp2_VIPR_ALG4_825144545_9239_10144_1_2014_02_25_USA_Swine_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGS
PEDV_ROMANIA_L01329_K25_15_01_2015_nsp2_VIPR_ALG4_SNQ28013_1_9272_10177_1_NA_NA_Unknown_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGA
KGW_1_JPN_2014_nsp2_VIPR_ALG4_948549221_9226_10131_1_2014_04_Japan_Pig_PEDV RLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGS
*****************..**********************:***:***********:*
PEDV_10F_nsp2_VIPR_ALG4_761662529_9284_10189_1_2012_01_China_Swine_PEDV AAGVYGVNMRSNYTIKGSFIKGACGSPGYNINKGTVDFCYLPHLELGSGCHVGSDLNGVM
USA_Texas435_2014_nsp2_VIPR_ALG4_825144895_9239_10144_1_2014_11_18_USA_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
USA_Wisconsin55_2013_nsp2_VIPR_ALG4_658130365_9249_10154_1_2013_11_03_USA_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
USA_Minnesota306_2014_nsp2_VIPR_ALG4_825144573_9239_10144_1_2014_04_08_USA_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
NW8_nsp2_VIPR_ALG4_ATY72311_1_9284_10189_1_2015_China_Swine_PEDV AAGVYGVNMRSNYTIRGSFINCACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
PEDV_MEX_JAL_01_2017_nsp2_VIPR_ALG4_AVU05366_1_9114_10019_1_2017_02_10_Mexico_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
GDS09_nsp2_VIPR_ALG4_QCQ20073_1_9284_10189_1_2014_08_01_China_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
CH_SCLS_2018_nsp2_VIPR_ALG4_AZL47221_1_9284_10189_1_2018_01_12_China_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
USA_Minnesota64_2013_nsp2_VIPR_ALG4_658130414_9249_10154_1_2013_11_19_USA_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
PEDV_H3_Barcelona_Vic_nsp2_VIPR_ALG4_QKV43846_1_9288_10193_1_2019_01_07_Spain_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
USA_SouthDakota285_2014_nsp2_VIPR_ALG4_825144566_9239_10144_1_2014_04_02_USA_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
CH_SCZY103_2017_nsp2_VIPR_ALG4_AZL47215_1_9284_10189_1_2017_12_01_China_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
PC177_nsp2_VIPR_ALG4_893707341_9273_10178_1_2013_12_USA_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
CH_SXYL_2016_nsp2_VIPR_ALG4_ASY04642_1_9283_10188_1_2016_09_10_China_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
GD_B_nsp2_VIPR_ALG4_399227062_9284_10189_1_2012_China_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
COL_Cundinamarca03962_2014_nsp2_VIPR_ALG4_QGQ60245_1_9272_10177_1_2014_03_21_Colombia_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
IBT_VN_nsp2_VIPR_ALG4_QPX15727_1_9284_10189_1_2018_02_02_Viet_Nam_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
USA_NorthCarolina66_2013_nsp2_VIPR_ALG4_658130428_9249_10154_1_2013_11_23_USA_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
PEDV_1453_Zaragoza_Tauste_nsp2_VIPR_ALG4_QKV43720_1_9249_10154_1_2014_04_24_Spain_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
GDS21_nsp2_VIPR_ALG4_QCQ19851_1_9284_10189_1_2014_01_09_China_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
CH_YNKM_8_2013_nsp2_VIPR_ALG4_575502657_9284_10189_1_2013_09_20_China_Unknown_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
JS2008_nsp2_VIPR_ALG4_459357910_9260_10165_1_2008_China_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
PEDV_JS_A_nsp2_VIPR_ALG4_AZS18877_1_9284_10189_1_2017_11_10_China_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
USA_Missouri177_2014_nsp2_VIPR_ALG4_825144510_9239_10144_1_2014_01_14_USA_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
USA_Illinois97_2013_nsp2_VIPR_ALG4_658130617_9249_10154_1_2013_12_11_USA_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
PEDV_2330_Orense_nsp2_VIPR_ALG4_QKV43840_1_9288_10193_1_2019_01_30_Spain_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
ZJU_G2_2013_nsp2_VIPR_ALG4_ANY27030_1_9284_10189_1_2013_11_14_China_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
USA_Nebraska348_2014_nsp2_VIPR_ALG4_825144545_9239_10144_1_2014_02_25_USA_Swine_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
PEDV_ROMANIA_L01329_K25_15_01_2015_nsp2_VIPR_ALG4_SNQ28013_1_9272_10177_1_NA_NA_Unknown_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
KGW_1_JPN_2014_nsp2_VIPR_ALG4_948549221_9226_10131_1_2014_04_Japan_Pig_PEDV AAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVM
***************:****: **********:***:**** :*************:***
PEDV_10F_nsp2_VIPR_ALG4_761662529_9284_10189_1_2012_01_China_Swine_PEDV YGGYEDQPTLQVEGPSSLFTKNVLAFLYAPLIKGSTGGLISSRIAVNRFNEWAVHKGMTT
USA_Texas435_2014_nsp2_VIPR_ALG4_825144895_9239_10144_1_2014_11_18_USA_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
USA_Wisconsin55_2013_nsp2_VIPR_ALG4_658130365_9249_10154_1_2013_11_03_USA_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
USA_Minnesota306_2014_nsp2_VIPR_ALG4_825144573_9239_10144_1_2014_04_08_USA_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
NW8_nsp2_VIPR_ALG4_ATY72311_1_9284_10189_1_2015_China_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
PEDV_MEX_JAL_01_2017_nsp2_VIPR_ALG4_AVU05366_1_9114_10019_1_2017_02_10_Mexico_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
GDS09_nsp2_VIPR_ALG4_QCQ20073_1_9284_10189_1_2014_08_01_China_Swine_PEDV YGGYEDQPILQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
CH_SCLS_2018_nsp2_VIPR_ALG4_AZL47221_1_9284_10189_1_2018_01_12_China_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
USA_Minnesota64_2013_nsp2_VIPR_ALG4_658130414_9249_10154_1_2013_11_19_USA_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
PEDV_H3_Barcelona_Vic_nsp2_VIPR_ALG4_QKV43846_1_9288_10193_1_2019_01_07_Spain_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
USA_SouthDakota285_2014_nsp2_VIPR_ALG4_825144566_9239_10144_1_2014_04_02_USA_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
CH_SCZY103_2017_nsp2_VIPR_ALG4_AZL47215_1_9284_10189_1_2017_12_01_China_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
PC177_nsp2_VIPR_ALG4_893707341_9273_10178_1_2013_12_USA_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
CH_SXYL_2016_nsp2_VIPR_ALG4_ASY04642_1_9283_10188_1_2016_09_10_China_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
GD_B_nsp2_VIPR_ALG4_399227062_9284_10189_1_2012_China_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
COL_Cundinamarca03962_2014_nsp2_VIPR_ALG4_QGQ60245_1_9272_10177_1_2014_03_21_Colombia_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
IBT_VN_nsp2_VIPR_ALG4_QPX15727_1_9284_10189_1_2018_02_02_Viet_Nam_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSARTAVDRFNEWAVHNGMTT
USA_NorthCarolina66_2013_nsp2_VIPR_ALG4_658130428_9249_10154_1_2013_11_23_USA_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
PEDV_1453_Zaragoza_Tauste_nsp2_VIPR_ALG4_QKV43720_1_9249_10154_1_2014_04_24_Spain_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
GDS21_nsp2_VIPR_ALG4_QCQ19851_1_9284_10189_1_2014_01_09_China_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
CH_YNKM_8_2013_nsp2_VIPR_ALG4_575502657_9284_10189_1_2013_09_20_China_Unknown_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
JS2008_nsp2_VIPR_ALG4_459357910_9260_10165_1_2008_China_Swine_PEDV YGGYEDQPILQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
PEDV_JS_A_nsp2_VIPR_ALG4_AZS18877_1_9284_10189_1_2017_11_10_China_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
USA_Missouri177_2014_nsp2_VIPR_ALG4_825144510_9239_10144_1_2014_01_14_USA_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
USA_Illinois97_2013_nsp2_VIPR_ALG4_658130617_9249_10154_1_2013_12_11_USA_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
PEDV_2330_Orense_nsp2_VIPR_ALG4_QKV43840_1_9288_10193_1_2019_01_30_Spain_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVWAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
ZJU_G2_2013_nsp2_VIPR_ALG4_ANY27030_1_9284_10189_1_2013_11_14_China_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRLAVDRFNEWAVHNGMTT
USA_Nebraska348_2014_nsp2_VIPR_ALG4_825144545_9239_10144_1_2014_02_25_USA_Swine_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
PEDV_ROMANIA_L01329_K25_15_01_2015_nsp2_VIPR_ALG4_SNQ28013_1_9272_10177_1_NA_NA_Unknown_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
KGW_1_JPN_2014_nsp2_VIPR_ALG4_948549221_9226_10131_1_2014_04_Japan_Pig_PEDV YGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTT
******** *****.*****:** *****.**:*** * *:* **:********:****
PEDV_10F_nsp2_VIPR_ALG4_761662529_9284_10189_1_2012_01_China_Swine_PEDV VFNTDCFSILAAKTGVDVQRLLASIQSLHKNFGEKQILGYTSLTDEFTTGEVIRQMYGVN
USA_Texas435_2014_nsp2_VIPR_ALG4_825144895_9239_10144_1_2014_11_18_USA_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
USA_Wisconsin55_2013_nsp2_VIPR_ALG4_658130365_9249_10154_1_2013_11_03_USA_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
USA_Minnesota306_2014_nsp2_VIPR_ALG4_825144573_9239_10144_1_2014_04_08_USA_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
NW8_nsp2_VIPR_ALG4_ATY72311_1_9284_10189_1_2015_China_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
PEDV_MEX_JAL_01_2017_nsp2_VIPR_ALG4_AVU05366_1_9114_10019_1_2017_02_10_Mexico_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVVRQMYGVN
GDS09_nsp2_VIPR_ALG4_QCQ20073_1_9284_10189_1_2014_08_01_China_Swine_PEDV VGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
CH_SCLS_2018_nsp2_VIPR_ALG4_AZL47221_1_9284_10189_1_2018_01_12_China_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
USA_Minnesota64_2013_nsp2_VIPR_ALG4_658130414_9249_10154_1_2013_11_19_USA_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
PEDV_H3_Barcelona_Vic_nsp2_VIPR_ALG4_QKV43846_1_9288_10193_1_2019_01_07_Spain_Swine_PEDV VGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
USA_SouthDakota285_2014_nsp2_VIPR_ALG4_825144566_9239_10144_1_2014_04_02_USA_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
CH_SCZY103_2017_nsp2_VIPR_ALG4_AZL47215_1_9284_10189_1_2017_12_01_China_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
PC177_nsp2_VIPR_ALG4_893707341_9273_10178_1_2013_12_USA_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
CH_SXYL_2016_nsp2_VIPR_ALG4_ASY04642_1_9283_10188_1_2016_09_10_China_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
GD_B_nsp2_VIPR_ALG4_399227062_9284_10189_1_2012_China_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
COL_Cundinamarca03962_2014_nsp2_VIPR_ALG4_QGQ60245_1_9272_10177_1_2014_03_21_Colombia_Swine_PEDV VGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
IBT_VN_nsp2_VIPR_ALG4_QPX15727_1_9284_10189_1_2018_02_02_Viet_Nam_Swine_PEDV VGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
USA_NorthCarolina66_2013_nsp2_VIPR_ALG4_658130428_9249_10154_1_2013_11_23_USA_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
PEDV_1453_Zaragoza_Tauste_nsp2_VIPR_ALG4_QKV43720_1_9249_10154_1_2014_04_24_Spain_Swine_PEDV VGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
GDS21_nsp2_VIPR_ALG4_QCQ19851_1_9284_10189_1_2014_01_09_China_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
CH_YNKM_8_2013_nsp2_VIPR_ALG4_575502657_9284_10189_1_2013_09_20_China_Unknown_PEDV VVNTDCFSIFAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
JS2008_nsp2_VIPR_ALG4_459357910_9260_10165_1_2008_China_Swine_PEDV VGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
PEDV_JS_A_nsp2_VIPR_ALG4_AZS18877_1_9284_10189_1_2017_11_10_China_Swine_PEDV VGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
USA_Missouri177_2014_nsp2_VIPR_ALG4_825144510_9239_10144_1_2014_01_14_USA_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
USA_Illinois97_2013_nsp2_VIPR_ALG4_658130617_9249_10154_1_2013_12_11_USA_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
PEDV_2330_Orense_nsp2_VIPR_ALG4_QKV43840_1_9288_10193_1_2019_01_30_Spain_Swine_PEDV VGKTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
ZJU_G2_2013_nsp2_VIPR_ALG4_ANY27030_1_9284_10189_1_2013_11_14_China_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
USA_Nebraska348_2014_nsp2_VIPR_ALG4_825144545_9239_10144_1_2014_02_25_USA_Swine_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
PEDV_ROMANIA_L01329_K25_15_01_2015_nsp2_VIPR_ALG4_SNQ28013_1_9272_10177_1_NA_NA_Unknown_PEDV VGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
KGW_1_JPN_2014_nsp2_VIPR_ALG4_948549221_9226_10131_1_2014_04_Japan_Pig_PEDV VVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVN
* :******:*********************** ******************:*******
PEDV_10F_nsp2_VIPR_ALG4_761662529_9284_10189_1_2012_01_China_Swine_PEDV LQ
USA_Texas435_2014_nsp2_VIPR_ALG4_825144895_9239_10144_1_2014_11_18_USA_Swine_PEDV LQ
USA_Wisconsin55_2013_nsp2_VIPR_ALG4_658130365_9249_10154_1_2013_11_03_USA_Swine_PEDV LQ
USA_Minnesota306_2014_nsp2_VIPR_ALG4_825144573_9239_10144_1_2014_04_08_USA_Swine_PEDV LQ
NW8_nsp2_VIPR_ALG4_ATY72311_1_9284_10189_1_2015_China_Swine_PEDV LQ
PEDV_MEX_JAL_01_2017_nsp2_VIPR_ALG4_AVU05366_1_9114_10019_1_2017_02_10_Mexico_Swine_PEDV LQ
GDS09_nsp2_VIPR_ALG4_QCQ20073_1_9284_10189_1_2014_08_01_China_Swine_PEDV LQ
CH_SCLS_2018_nsp2_VIPR_ALG4_AZL47221_1_9284_10189_1_2018_01_12_China_Swine_PEDV LQ
USA_Minnesota64_2013_nsp2_VIPR_ALG4_658130414_9249_10154_1_2013_11_19_USA_Swine_PEDV LQ
PEDV_H3_Barcelona_Vic_nsp2_VIPR_ALG4_QKV43846_1_9288_10193_1_2019_01_07_Spain_Swine_PEDV LQ
USA_SouthDakota285_2014_nsp2_VIPR_ALG4_825144566_9239_10144_1_2014_04_02_USA_Swine_PEDV LQ
CH_SCZY103_2017_nsp2_VIPR_ALG4_AZL47215_1_9284_10189_1_2017_12_01_China_Swine_PEDV LQ
PC177_nsp2_VIPR_ALG4_893707341_9273_10178_1_2013_12_USA_Swine_PEDV LQ
CH_SXYL_2016_nsp2_VIPR_ALG4_ASY04642_1_9283_10188_1_2016_09_10_China_Swine_PEDV LQ
GD_B_nsp2_VIPR_ALG4_399227062_9284_10189_1_2012_China_Swine_PEDV LQ
COL_Cundinamarca03962_2014_nsp2_VIPR_ALG4_QGQ60245_1_9272_10177_1_2014_03_21_Colombia_Swine_PEDV LQ
IBT_VN_nsp2_VIPR_ALG4_QPX15727_1_9284_10189_1_2018_02_02_Viet_Nam_Swine_PEDV LQ
USA_NorthCarolina66_2013_nsp2_VIPR_ALG4_658130428_9249_10154_1_2013_11_23_USA_Swine_PEDV LQ
PEDV_1453_Zaragoza_Tauste_nsp2_VIPR_ALG4_QKV43720_1_9249_10154_1_2014_04_24_Spain_Swine_PEDV LQ
GDS21_nsp2_VIPR_ALG4_QCQ19851_1_9284_10189_1_2014_01_09_China_Swine_PEDV LQ
CH_YNKM_8_2013_nsp2_VIPR_ALG4_575502657_9284_10189_1_2013_09_20_China_Unknown_PEDV LQ
JS2008_nsp2_VIPR_ALG4_459357910_9260_10165_1_2008_China_Swine_PEDV LQ
PEDV_JS_A_nsp2_VIPR_ALG4_AZS18877_1_9284_10189_1_2017_11_10_China_Swine_PEDV LQ
USA_Missouri177_2014_nsp2_VIPR_ALG4_825144510_9239_10144_1_2014_01_14_USA_Swine_PEDV LQ
USA_Illinois97_2013_nsp2_VIPR_ALG4_658130617_9249_10154_1_2013_12_11_USA_Swine_PEDV LQ
PEDV_2330_Orense_nsp2_VIPR_ALG4_QKV43840_1_9288_10193_1_2019_01_30_Spain_Swine_PEDV LQ
ZJU_G2_2013_nsp2_VIPR_ALG4_ANY27030_1_9284_10189_1_2013_11_14_China_Swine_PEDV LQ
USA_Nebraska348_2014_nsp2_VIPR_ALG4_825144545_9239_10144_1_2014_02_25_USA_Swine_PEDV LQ
PEDV_ROMANIA_L01329_K25_15_01_2015_nsp2_VIPR_ALG4_SNQ28013_1_9272_10177_1_NA_NA_Unknown_PEDV LQ
KGW_1_JPN_2014_nsp2_VIPR_ALG4_948549221_9226_10131_1_2014_04_Japan_Pig_PEDV LQ
**
>PEDV_10F_nsp2_VIPR_ALG4_761662529_9284_10189_1_2012_01_China_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGAGGGTTTTGCAGCTGGGGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAAAGGCTCGTTCATTAAGGGCGCTTGTGGTTCACCGGGTTATAACATTAACAAGGGTACCGTTGATTTTTGCTATTTACCCCACCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAAATGGTGTTATGTATGGGGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCCCTAGTAGTCTGTTTACAAAAAATGTGTTGGCATTTCTTTATGCACCACTCATTAAGGGTTCTACCGGGGGGCTTATTTCTTCTAGGATTGCTGTAAACAGGTTTAATGAGTGGGCTGTTCATAAGGGTATGACAACAGTATTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAAACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGAAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >USA_Texas435_2014_nsp2_VIPR_ALG4_825144895_9239_10144_1_2014_11_18_USA_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >USA_Wisconsin55_2013_nsp2_VIPR_ALG4_658130365_9249_10154_1_2013_11_03_USA_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >USA_Minnesota306_2014_nsp2_VIPR_ALG4_825144573_9239_10144_1_2014_04_08_USA_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >NW8_nsp2_VIPR_ALG4_ATY72311_1_9284_10189_1_2015_China_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTCTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATTGCGCTTGTGGTTCACCTGGTTATAATATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >PEDV_MEX_JAL_01_2017_nsp2_VIPR_ALG4_AVU05366_1_9114_10019_1_2017_02_10_Mexico_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTGTACGTCAAATGTATGGCGTTAATCTTCAG >GDS09_nsp2_VIPR_ALG4_QCQ20073_1_9284_10189_1_2014_08_01_China_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCCTCTGGTGTTGTTGAGAAGTGCATAGTCCGTGTTTGCTATGGTAATATGGCTCTCAATGGTCTATGGCTTGGTGATACTGTTATGTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGATTATGCCCTTTCTGTTTTACGCCTCCATAACTTCTCCATTTCATCTGGGAATGTTTTCCTAGGTGTTGTGAGTGCAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCCATCGCACAGTTAGACCGGGTGAATCTTTTAATATTTTGGCTTGTTATGATGGTGCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAATATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTATTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATCGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTGGGCAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACAGGCGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCCCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >CH_SCLS_2018_nsp2_VIPR_ALG4_AZL47221_1_9284_10189_1_2018_01_12_China_Swine_PEDV GCAGGTTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGTCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAAACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAATATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAACTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >USA_Minnesota64_2013_nsp2_VIPR_ALG4_658130414_9249_10154_1_2013_11_19_USA_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACGACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >PEDV_H3_Barcelona_Vic_nsp2_VIPR_ALG4_QKV43846_1_9288_10193_1_2019_01_07_Spain_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATGTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAATAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCAGGTGAATCTTTTAATATTTTGGCGTGCTATGATGGTGCTGCAGCTGGTGTTTATGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAATATTAACAATGGTACCGTTGAGTTTTGCTATTTACATCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGGTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >USA_SouthDakota285_2014_nsp2_VIPR_ALG4_825144566_9239_10144_1_2014_04_02_USA_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >CH_SCZY103_2017_nsp2_VIPR_ALG4_AZL47215_1_9284_10189_1_2017_12_01_China_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTCAATGGCCTATGGCTTGGTGATACTGTTATGTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTGCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >PC177_nsp2_VIPR_ALG4_893707341_9273_10178_1_2013_12_USA_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACGACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >CH_SXYL_2016_nsp2_VIPR_ALG4_ASY04642_1_9283_10188_1_2016_09_10_China_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >GD_B_nsp2_VIPR_ALG4_399227062_9284_10189_1_2012_China_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACGGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >COL_Cundinamarca03962_2014_nsp2_VIPR_ALG4_QGQ60245_1_9272_10177_1_2014_03_21_Colombia_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATGTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCAGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTGCTGCAGCTGGTGTTTATGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAATATTAACAATGGTACCGTTGAGTTTTGCTATTTACATCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGGTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >IBT_VN_nsp2_VIPR_ALG4_QPX15727_1_9284_10189_1_2018_02_02_Viet_Nam_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCATAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATTTTGGCGTGCTATGATGGTGCTGCAGCTGGTGTTTATGGCGTTAACATGCGCTCTAATTATACTATTAGAGGCTCATTCATTAATGGCGCTTGTGGTTCACCTGGTTATAATATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTCGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACGTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTGCTAGGACCGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTGGGTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGCGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTACATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCTTTGACAGATGAGTTTACTACAGGTGAGGTTATACGTCAAATGTATGGCGTTAATCTTCAG >USA_NorthCarolina66_2013_nsp2_VIPR_ALG4_658130428_9249_10154_1_2013_11_23_USA_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >PEDV_1453_Zaragoza_Tauste_nsp2_VIPR_ALG4_QKV43720_1_9249_10154_1_2014_04_24_Spain_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATGTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCAGGTGAATCTTTTAATATTTTGGCGTGCTATGATGGTGCTGCAGCTGGTGTTTATGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAATATTAACAATGGTACCGTTGAGTTTTGCTATTTACATCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGGTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >GDS21_nsp2_VIPR_ALG4_QCQ19851_1_9284_10189_1_2014_01_09_China_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATGTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTGCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGAGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >CH_YNKM_8_2013_nsp2_VIPR_ALG4_575502657_9284_10189_1_2013_09_20_China_Unknown_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATGTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTGCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTATACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGTTAATACTGATTGCTTTTCTATTTTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >JS2008_nsp2_VIPR_ALG4_459357910_9260_10165_1_2008_China_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCCTCTGGTGTTGTTGAGAAGTGCATAGTCCGTGTTTGCTATGGTAATATGGCTCTCAATGGTCTATGGCTTGGTGATACTGTTATGTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGATTATGCCCTTTCTGTTTTACGCCTCCATAACTTCTCCATTTCATCTGGGAATGTTTTCCTAGGTGTTGTGAGTGCAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCCATCGCACAGTTAGACCGGGTGAATCTTTTAATATTTTGGCTTGTTATGATGGTGCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAATATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTATTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATCGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTGGGCAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACAGGCGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCCCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >PEDV_JS_A_nsp2_VIPR_ALG4_AZS18877_1_9284_10189_1_2017_11_10_China_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATTTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCATAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACACCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATTTTGGCGTGCTATGATGGTGCTGCAGCTGGTGTTTATGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAATATTAACAATGGCACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACGGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACTTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTGGGTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGCGTCGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >USA_Missouri177_2014_nsp2_VIPR_ALG4_825144510_9239_10144_1_2014_01_14_USA_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >USA_Illinois97_2013_nsp2_VIPR_ALG4_658130617_9249_10154_1_2013_12_11_USA_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACGACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >PEDV_2330_Orense_nsp2_VIPR_ALG4_QKV43840_1_9288_10193_1_2019_01_30_Spain_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATGTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCAGGTGAATCTTTTAATATTTTGGCGTGCTATGATGGTGCTGCAGCTGGTGTTTATGGCGTTAACATGCGCTCTAATTACACTATTAGAGGATCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAATATTAACAATGGTACCGTTGAGTTTTGCTATTTACATCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTGGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGGTAAGACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >ZJU_G2_2013_nsp2_VIPR_ALG4_ANY27030_1_9284_10189_1_2013_11_14_China_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGCTTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >USA_Nebraska348_2014_nsp2_VIPR_ALG4_825144545_9239_10144_1_2014_02_25_USA_Swine_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATGTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCATTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >PEDV_ROMANIA_L01329_K25_15_01_2015_nsp2_VIPR_ALG4_SNQ28013_1_9272_10177_1_NA_NA_Unknown_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATGTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCAGGTGAATCTTTTAATATTTTGGCGTGCTATGATGGTGCTGCAGCTGGTGTTTATGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAATATTAACAATGGTACCGTTGAGTTTTGCTATTTACATCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACAACAGTAGGTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG >KGW_1_JPN_2014_nsp2_VIPR_ALG4_948549221_9226_10131_1_2014_04_Japan_Pig_PEDV GCTGGCTTGCGTAAGATGGCACAACCATCTGGTGTTGTTGAGAAGTGCATAGTTCGTGTTTGCTATGGTAATATGGCTCTTAATGGCCTATGGCTTGGTGATACTGTTATCTGCCCACGCCATGTTATAGCGTCTAGTACTACTAGCACTATAGATTATGACTATGCCCTTTCTGTTTTACGCCTCCACAACTTCTCCATTTCATCTGGTAATGTTTTCCTAGGTGTTGTGGGTGTAACCATGCGAGGTGCTTTGTTGCAGATAAAGGTTAATCAAAACAATGTCCACACGCCTAAGTACACCTATCGCACAGTTAGACCGGGTGAATCTTTTAATATCTTGGCGTGCTATGATGGTTCTGCAGCTGGTGTTTACGGCGTTAACATGCGCTCTAATTACACTATTAGAGGCTCGTTCATTAATGGCGCTTGTGGTTCACCTGGTTATAACATTAACAATGGTACCGTTGAGTTTTGCTATTTACACCAGCTTGAACTTGGTTCAGGCTGTCATGTTGGTAGCGACTTAGATGGTGTTATGTATGGTGGTTATGAGGACCAACCTACTTTGCAAGTTGAAGGCGCTAGTAGTCTGTTTACAGAGAATGTGTTGGCATTTCTTTATGCAGCACTCATTAATGGTTCTACCTGGTGGCTTAGTTCTTCTAGGATTGCTGTAGACAGGTTTAATGAGTGGGCTGTTCATAATGGTATGACGACAGTAGTTAATACTGATTGCTTTTCTATTCTTGCTGCTAAGACTGGTGTTGATGTACAACGTTTGTTGGCCTCAATCCAGTCTCTGCATAAGAATTTTGGTGGAAAGCAAATTCTTGGCTATACCTCGTTGACAGATGAGTTTACTACAGGTGAAGTTATACGTCAAATGTATGGCGTTAATCTTCAG
>PEDV_10F_nsp2_VIPR_ALG4_761662529_9284_10189_1_2012_01_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYEGFAAGVYGVNMRSNYTIKGSFIKGACGSPGYNINKGTVDFCYLPHLELGSGCHVGSDLNGVMYGGYEDQPTLQVEGPSSLFTKNVLAFLYAPLIKGSTGGLISSRIAVNRFNEWAVHKGMTTVFNTDCFSILAAKTGVDVQRLLASIQSLHKNFGEKQILGYTSLTDEFTTGEVIRQMYGVNLQ >USA_Texas435_2014_nsp2_VIPR_ALG4_825144895_9239_10144_1_2014_11_18_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >USA_Wisconsin55_2013_nsp2_VIPR_ALG4_658130365_9249_10154_1_2013_11_03_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >USA_Minnesota306_2014_nsp2_VIPR_ALG4_825144573_9239_10144_1_2014_04_08_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >NW8_nsp2_VIPR_ALG4_ATY72311_1_9284_10189_1_2015_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINCACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >PEDV_MEX_JAL_01_2017_nsp2_VIPR_ALG4_AVU05366_1_9114_10019_1_2017_02_10_Mexico_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVVRQMYGVNLQ >GDS09_nsp2_VIPR_ALG4_QCQ20073_1_9284_10189_1_2014_08_01_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVSATMRGALLQIKVNQNNVHTPKYTHRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPILQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >CH_SCLS_2018_nsp2_VIPR_ALG4_AZL47221_1_9284_10189_1_2018_01_12_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVKPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >USA_Minnesota64_2013_nsp2_VIPR_ALG4_658130414_9249_10154_1_2013_11_19_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >PEDV_H3_Barcelona_Vic_nsp2_VIPR_ALG4_QKV43846_1_9288_10193_1_2019_01_07_Spain_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >USA_SouthDakota285_2014_nsp2_VIPR_ALG4_825144566_9239_10144_1_2014_04_02_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >CH_SCZY103_2017_nsp2_VIPR_ALG4_AZL47215_1_9284_10189_1_2017_12_01_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >PC177_nsp2_VIPR_ALG4_893707341_9273_10178_1_2013_12_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >CH_SXYL_2016_nsp2_VIPR_ALG4_ASY04642_1_9283_10188_1_2016_09_10_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >GD_B_nsp2_VIPR_ALG4_399227062_9284_10189_1_2012_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >COL_Cundinamarca03962_2014_nsp2_VIPR_ALG4_QGQ60245_1_9272_10177_1_2014_03_21_Colombia_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >IBT_VN_nsp2_VIPR_ALG4_QPX15727_1_9284_10189_1_2018_02_02_Viet_Nam_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSARTAVDRFNEWAVHNGMTTVGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >USA_NorthCarolina66_2013_nsp2_VIPR_ALG4_658130428_9249_10154_1_2013_11_23_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >PEDV_1453_Zaragoza_Tauste_nsp2_VIPR_ALG4_QKV43720_1_9249_10154_1_2014_04_24_Spain_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >GDS21_nsp2_VIPR_ALG4_QCQ19851_1_9284_10189_1_2014_01_09_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >CH_YNKM_8_2013_nsp2_VIPR_ALG4_575502657_9284_10189_1_2013_09_20_China_Unknown_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSIFAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >JS2008_nsp2_VIPR_ALG4_459357910_9260_10165_1_2008_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVSATMRGALLQIKVNQNNVHTPKYTHRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPILQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >PEDV_JS_A_nsp2_VIPR_ALG4_AZS18877_1_9284_10189_1_2017_11_10_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >USA_Missouri177_2014_nsp2_VIPR_ALG4_825144510_9239_10144_1_2014_01_14_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >USA_Illinois97_2013_nsp2_VIPR_ALG4_658130617_9249_10154_1_2013_12_11_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >PEDV_2330_Orense_nsp2_VIPR_ALG4_QKV43840_1_9288_10193_1_2019_01_30_Spain_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVWAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVGKTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >ZJU_G2_2013_nsp2_VIPR_ALG4_ANY27030_1_9284_10189_1_2013_11_14_China_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRLAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >USA_Nebraska348_2014_nsp2_VIPR_ALG4_825144545_9239_10144_1_2014_02_25_USA_Swine_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSIIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >PEDV_ROMANIA_L01329_K25_15_01_2015_nsp2_VIPR_ALG4_SNQ28013_1_9272_10177_1_NA_NA_Unknown_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVGNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ >KGW_1_JPN_2014_nsp2_VIPR_ALG4_948549221_9226_10131_1_2014_04_Japan_Pig_PEDV AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGVDVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQ
Reading sequence file /data//pss_subsets/LZW_nsp2_VIPR_ALG4_672096717_9284_10189_1_2012_02_China_Unknown_PEDV.result/original_alignment/codeml/fasta/LZW_nsp2_VIPR_ALG4_672096717_9284_10189_1_2012_02_China_Unknown_PEDV.result.1
Found 30 sequences of length 906
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 1.1%
Found 29 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0%100.0%
Using a window size of 80 with k as 3
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 54 polymorphic sites
**p-Value(s)**
----------
NSS: 7.32e-01 (1000 permutations)
Max Chi^2: 1.00e-03 (1000 permutations)
PHI (Permutation): 2.99e-01 (1000 permutations)
PHI (Normal): 2.08e-01
#NEXUS
[ID: 1841809723]
begin taxa;
dimensions ntax=30;
taxlabels
CH_SCZY103_2017_nsp2_VIPR_ALG4_AZL47215_1_9284_10189_1_2017_12_01_China_Swine_PEDV
USA_SouthDakota285_2014_nsp2_VIPR_ALG4_825144566_9239_10144_1_2014_04_02_USA_Swine_PEDV
PC177_nsp2_VIPR_ALG4_893707341_9273_10178_1_2013_12_USA_Swine_PEDV
IBT_VN_nsp2_VIPR_ALG4_QPX15727_1_9284_10189_1_2018_02_02_Viet_Nam_Swine_PEDV
COL_Cundinamarca03962_2014_nsp2_VIPR_ALG4_QGQ60245_1_9272_10177_1_2014_03_21_Colombia_Swine_PEDV
USA_NorthCarolina66_2013_nsp2_VIPR_ALG4_658130428_9249_10154_1_2013_11_23_USA_Swine_PEDV
JS2008_nsp2_VIPR_ALG4_459357910_9260_10165_1_2008_China_Swine_PEDV
CH_YNKM_8_2013_nsp2_VIPR_ALG4_575502657_9284_10189_1_2013_09_20_China_Unknown_PEDV
ZJU_G2_2013_nsp2_VIPR_ALG4_ANY27030_1_9284_10189_1_2013_11_14_China_Swine_PEDV
PEDV_2330_Orense_nsp2_VIPR_ALG4_QKV43840_1_9288_10193_1_2019_01_30_Spain_Swine_PEDV
USA_Minnesota306_2014_nsp2_VIPR_ALG4_825144573_9239_10144_1_2014_04_08_USA_Swine_PEDV
KGW_1_JPN_2014_nsp2_VIPR_ALG4_948549221_9226_10131_1_2014_04_Japan_Pig_PEDV
CH_SCLS_2018_nsp2_VIPR_ALG4_AZL47221_1_9284_10189_1_2018_01_12_China_Swine_PEDV
PEDV_10F_nsp2_VIPR_ALG4_761662529_9284_10189_1_2012_01_China_Swine_PEDV
USA_Wisconsin55_2013_nsp2_VIPR_ALG4_658130365_9249_10154_1_2013_11_03_USA_Swine_PEDV
USA_Texas435_2014_nsp2_VIPR_ALG4_825144895_9239_10144_1_2014_11_18_USA_Swine_PEDV
PEDV_MEX_JAL_01_2017_nsp2_VIPR_ALG4_AVU05366_1_9114_10019_1_2017_02_10_Mexico_Swine_PEDV
NW8_nsp2_VIPR_ALG4_ATY72311_1_9284_10189_1_2015_China_Swine_PEDV
GDS09_nsp2_VIPR_ALG4_QCQ20073_1_9284_10189_1_2014_08_01_China_Swine_PEDV
PEDV_H3_Barcelona_Vic_nsp2_VIPR_ALG4_QKV43846_1_9288_10193_1_2019_01_07_Spain_Swine_PEDV
CH_SXYL_2016_nsp2_VIPR_ALG4_ASY04642_1_9283_10188_1_2016_09_10_China_Swine_PEDV
GD_B_nsp2_VIPR_ALG4_399227062_9284_10189_1_2012_China_Swine_PEDV
GDS21_nsp2_VIPR_ALG4_QCQ19851_1_9284_10189_1_2014_01_09_China_Swine_PEDV
PEDV_1453_Zaragoza_Tauste_nsp2_VIPR_ALG4_QKV43720_1_9249_10154_1_2014_04_24_Spain_Swine_PEDV
USA_Illinois97_2013_nsp2_VIPR_ALG4_658130617_9249_10154_1_2013_12_11_USA_Swine_PEDV
PEDV_JS_A_nsp2_VIPR_ALG4_AZS18877_1_9284_10189_1_2017_11_10_China_Swine_PEDV
USA_Missouri177_2014_nsp2_VIPR_ALG4_825144510_9239_10144_1_2014_01_14_USA_Swine_PEDV
USA_Minnesota64_2013_nsp2_VIPR_ALG4_658130414_9249_10154_1_2013_11_19_USA_Swine_PEDV
PEDV_ROMANIA_L01329_K25_15_01_2015_nsp2_VIPR_ALG4_SNQ28013_1_9272_10177_1_NA_NA_Unknown_PEDV
USA_Nebraska348_2014_nsp2_VIPR_ALG4_825144545_9239_10144_1_2014_02_25_USA_Swine_PEDV
;
end;
begin trees;
translate
1 CH_SCZY103_2017_nsp2_VIPR_ALG4_AZL47215_1_9284_10189_1_2017_12_01_China_Swine_PEDV,
2 USA_SouthDakota285_2014_nsp2_VIPR_ALG4_825144566_9239_10144_1_2014_04_02_USA_Swine_PEDV,
3 PC177_nsp2_VIPR_ALG4_893707341_9273_10178_1_2013_12_USA_Swine_PEDV,
4 IBT_VN_nsp2_VIPR_ALG4_QPX15727_1_9284_10189_1_2018_02_02_Viet_Nam_Swine_PEDV,
5 COL_Cundinamarca03962_2014_nsp2_VIPR_ALG4_QGQ60245_1_9272_10177_1_2014_03_21_Colombia_Swine_PEDV,
6 USA_NorthCarolina66_2013_nsp2_VIPR_ALG4_658130428_9249_10154_1_2013_11_23_USA_Swine_PEDV,
7 JS2008_nsp2_VIPR_ALG4_459357910_9260_10165_1_2008_China_Swine_PEDV,
8 CH_YNKM_8_2013_nsp2_VIPR_ALG4_575502657_9284_10189_1_2013_09_20_China_Unknown_PEDV,
9 ZJU_G2_2013_nsp2_VIPR_ALG4_ANY27030_1_9284_10189_1_2013_11_14_China_Swine_PEDV,
10 PEDV_2330_Orense_nsp2_VIPR_ALG4_QKV43840_1_9288_10193_1_2019_01_30_Spain_Swine_PEDV,
11 USA_Minnesota306_2014_nsp2_VIPR_ALG4_825144573_9239_10144_1_2014_04_08_USA_Swine_PEDV,
12 KGW_1_JPN_2014_nsp2_VIPR_ALG4_948549221_9226_10131_1_2014_04_Japan_Pig_PEDV,
13 CH_SCLS_2018_nsp2_VIPR_ALG4_AZL47221_1_9284_10189_1_2018_01_12_China_Swine_PEDV,
14 PEDV_10F_nsp2_VIPR_ALG4_761662529_9284_10189_1_2012_01_China_Swine_PEDV,
15 USA_Wisconsin55_2013_nsp2_VIPR_ALG4_658130365_9249_10154_1_2013_11_03_USA_Swine_PEDV,
16 USA_Texas435_2014_nsp2_VIPR_ALG4_825144895_9239_10144_1_2014_11_18_USA_Swine_PEDV,
17 PEDV_MEX_JAL_01_2017_nsp2_VIPR_ALG4_AVU05366_1_9114_10019_1_2017_02_10_Mexico_Swine_PEDV,
18 NW8_nsp2_VIPR_ALG4_ATY72311_1_9284_10189_1_2015_China_Swine_PEDV,
19 GDS09_nsp2_VIPR_ALG4_QCQ20073_1_9284_10189_1_2014_08_01_China_Swine_PEDV,
20 PEDV_H3_Barcelona_Vic_nsp2_VIPR_ALG4_QKV43846_1_9288_10193_1_2019_01_07_Spain_Swine_PEDV,
21 CH_SXYL_2016_nsp2_VIPR_ALG4_ASY04642_1_9283_10188_1_2016_09_10_China_Swine_PEDV,
22 GD_B_nsp2_VIPR_ALG4_399227062_9284_10189_1_2012_China_Swine_PEDV,
23 GDS21_nsp2_VIPR_ALG4_QCQ19851_1_9284_10189_1_2014_01_09_China_Swine_PEDV,
24 PEDV_1453_Zaragoza_Tauste_nsp2_VIPR_ALG4_QKV43720_1_9249_10154_1_2014_04_24_Spain_Swine_PEDV,
25 USA_Illinois97_2013_nsp2_VIPR_ALG4_658130617_9249_10154_1_2013_12_11_USA_Swine_PEDV,
26 PEDV_JS_A_nsp2_VIPR_ALG4_AZS18877_1_9284_10189_1_2017_11_10_China_Swine_PEDV,
27 USA_Missouri177_2014_nsp2_VIPR_ALG4_825144510_9239_10144_1_2014_01_14_USA_Swine_PEDV,
28 USA_Minnesota64_2013_nsp2_VIPR_ALG4_658130414_9249_10154_1_2013_11_19_USA_Swine_PEDV,
29 PEDV_ROMANIA_L01329_K25_15_01_2015_nsp2_VIPR_ALG4_SNQ28013_1_9272_10177_1_NA_NA_Unknown_PEDV,
30 USA_Nebraska348_2014_nsp2_VIPR_ALG4_825144545_9239_10144_1_2014_02_25_USA_Swine_PEDV
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:1.168114e-03,8:1.865954e-03,23:1.216942e-03,(((4:7.857466e-03,(7:4.956570e-04,19:5.009822e-04)1.000:1.238212e-02)0.615:1.110837e-03,26:4.699127e-03)1.000:2.892588e-03,(5:1.014096e-03,10:2.591941e-03,20:1.226116e-03,24:5.018957e-04,29:5.004961e-04)0.969:1.946691e-03)1.000:3.114945e-03,((2:4.697864e-04,(3:5.004299e-04,12:5.016497e-04,25:5.006398e-04,28:5.013795e-04)0.968:1.178600e-03,6:4.961648e-04,9:1.214731e-03,11:4.999053e-04,(13:4.443592e-03,18:2.224380e-03)0.531:1.163298e-03,14:1.887038e-02,15:5.033219e-04,16:4.717968e-04,17:1.184491e-03,21:4.652261e-04,22:1.208453e-03,27:4.933723e-04)0.968:1.255793e-03,30:1.264396e-03)0.965:1.227758e-03);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:1.168114e-03,8:1.865954e-03,23:1.216942e-03,(((4:7.857466e-03,(7:4.956570e-04,19:5.009822e-04):1.238212e-02):1.110837e-03,26:4.699127e-03):2.892588e-03,(5:1.014096e-03,10:2.591941e-03,20:1.226116e-03,24:5.018957e-04,29:5.004961e-04):1.946691e-03):3.114945e-03,((2:4.697864e-04,(3:5.004299e-04,12:5.016497e-04,25:5.006398e-04,28:5.013795e-04):1.178600e-03,6:4.961648e-04,9:1.214731e-03,11:4.999053e-04,(13:4.443592e-03,18:2.224380e-03):1.163298e-03,14:1.887038e-02,15:5.033219e-04,16:4.717968e-04,17:1.184491e-03,21:4.652261e-04,22:1.208453e-03,27:4.933723e-04):1.255793e-03,30:1.264396e-03):1.227758e-03);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1859.01 -1884.63
2 -1857.15 -1882.63
--------------------------------------
TOTAL -1857.70 -1884.06
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.107596 0.000191 0.082229 0.135381 0.106466 1440.40 1470.70 1.000
r(A<->C){all} 0.072685 0.000978 0.020225 0.134386 0.069066 736.64 802.47 1.004
r(A<->G){all} 0.241763 0.002233 0.153562 0.335791 0.240157 656.15 708.68 1.000
r(A<->T){all} 0.031404 0.000264 0.004043 0.063136 0.029129 1014.05 1051.64 1.000
r(C<->G){all} 0.078784 0.001032 0.021943 0.141653 0.075751 477.46 520.40 1.001
r(C<->T){all} 0.381100 0.002832 0.275694 0.480473 0.380228 635.47 743.90 1.002
r(G<->T){all} 0.194265 0.001429 0.122526 0.266972 0.191604 606.32 651.95 1.000
pi(A){all} 0.235871 0.000186 0.210441 0.264507 0.235887 1027.67 1128.84 1.000
pi(C){all} 0.184749 0.000153 0.161905 0.210168 0.184510 919.20 996.61 1.000
pi(G){all} 0.237047 0.000196 0.211339 0.266437 0.236911 1017.46 1041.09 1.001
pi(T){all} 0.342333 0.000236 0.312316 0.372519 0.342701 928.33 1009.91 1.002
alpha{1,2} 0.942695 0.913947 0.000496 2.893835 0.648502 1250.55 1256.61 1.000
alpha{3} 1.376686 1.046723 0.109621 3.503814 1.113900 1189.02 1239.85 1.000
pinvar{all} 0.271966 0.025781 0.000109 0.545554 0.264760 840.70 966.38 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/LZW_nsp2_VIPR_ALG4_672096717_9284_10189_1_2012_02_China_Unknown_PEDV.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 30 ls = 302
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 10 8 8 8 8 8 | Ser TCT 11 12 12 12 12 12 | Tyr TAT 12 12 12 12 12 12 | Cys TGT 2 2 2 2 2 2
TTC 3 3 3 3 3 3 | TCC 1 1 1 1 1 1 | TAC 3 3 3 3 3 3 | TGC 6 6 6 6 7 6
Leu TTA 3 3 3 3 3 3 | TCA 4 4 4 4 4 4 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 9 9 9 9 9 9 | TCG 2 2 2 2 2 2 | TAG 0 0 0 0 0 0 | Trp TGG 2 4 4 4 4 4
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 10 10 10 10 10 10 | Pro CCT 3 3 3 3 3 3 | His CAT 4 4 4 4 4 4 | Arg CGT 4 4 4 4 4 4
CTC 2 2 2 2 2 2 | CCC 1 0 0 0 0 0 | CAC 3 3 3 3 3 3 | CGC 4 4 4 4 4 4
CTA 2 2 2 2 2 2 | CCA 3 2 2 2 2 2 | Gln CAA 7 7 7 7 7 7 | CGA 1 1 1 1 1 1
CTG 2 2 2 2 2 2 | CCG 2 1 1 1 1 1 | CAG 3 4 4 4 4 4 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 9 8 8 8 8 8 | Thr ACT 9 9 9 9 9 9 | Asn AAT 13 16 16 16 17 16 | Ser AGT 3 4 4 4 4 4
ATC 3 3 3 3 3 3 | ACC 5 5 5 5 5 5 | AAC 6 5 5 5 4 5 | AGC 2 2 2 2 2 2
ATA 5 5 5 5 5 4 | ACA 6 6 6 6 6 6 | Lys AAA 3 0 0 0 0 0 | Arg AGA 1 2 2 2 2 2
Met ATG 7 7 7 7 7 7 | ACG 1 1 1 1 1 1 | AAG 10 7 7 7 7 7 | AGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 21 22 22 22 21 22 | Ala GCT 9 10 10 10 10 10 | Asp GAT 6 7 7 7 7 7 | Gly GGT 21 23 23 23 23 23
GTC 1 1 1 1 2 1 | GCC 2 2 2 2 2 2 | GAC 3 4 4 4 4 4 | GGC 9 9 9 9 8 9
GTA 4 4 4 4 4 5 | GCA 4 5 5 5 5 5 | Glu GAA 5 4 4 4 4 4 | GGA 0 1 1 1 1 1
GTG 2 2 2 2 2 2 | GCG 2 2 2 2 2 2 | GAG 5 6 6 6 6 6 | GGG 4 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 8 8 8 8 8 8 | Ser TCT 10 12 12 11 12 11 | Tyr TAT 11 12 12 13 12 12 | Cys TGT 3 3 2 2 2 2
TTC 3 3 3 3 3 3 | TCC 2 1 1 1 1 1 | TAC 3 3 3 2 3 3 | TGC 5 5 6 6 6 6
Leu TTA 3 3 3 3 3 3 | TCA 4 4 4 4 4 4 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 9 9 9 9 9 9 | TCG 2 2 2 2 2 2 | TAG 0 0 0 0 0 0 | Trp TGG 4 4 4 4 4 4
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 9 10 10 10 10 9 | Pro CCT 3 3 3 3 3 3 | His CAT 6 4 4 5 4 4 | Arg CGT 4 4 4 4 4 4
CTC 3 2 2 2 2 3 | CCC 1 0 0 0 0 0 | CAC 2 3 3 2 3 3 | CGC 4 4 4 4 4 4
CTA 2 2 2 2 2 2 | CCA 1 2 2 3 2 2 | Gln CAA 7 8 7 7 7 7 | CGA 1 1 1 1 1 1
CTG 2 2 2 2 2 2 | CCG 1 1 1 0 1 1 | CAG 4 3 4 4 4 4 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 9 8 8 9 8 8 | Thr ACT 7 9 9 9 9 9 | Asn AAT 17 17 16 18 16 16 | Ser AGT 5 4 4 4 4 4
ATC 2 3 3 1 3 2 | ACC 5 5 5 5 5 5 | AAC 4 4 5 3 5 5 | AGC 2 2 2 2 2 2
ATA 5 5 5 5 5 5 | ACA 7 6 5 6 6 6 | Lys AAA 0 1 0 0 0 0 | Arg AGA 2 1 2 2 2 2
Met ATG 8 7 7 8 7 8 | ACG 1 1 2 1 1 1 | AAG 7 7 7 7 7 7 | AGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 20 22 22 21 22 22 | Ala GCT 12 9 10 11 10 11 | Asp GAT 8 7 7 7 7 7 | Gly GGT 21 24 23 24 23 23
GTC 2 1 1 1 1 1 | GCC 2 2 2 2 2 2 | GAC 3 4 4 4 4 4 | GGC 10 8 9 9 9 9
GTA 2 4 4 4 4 4 | GCA 6 6 5 5 5 5 | Glu GAA 4 4 4 4 4 4 | GGA 1 1 1 1 1 1
GTG 3 2 2 2 2 2 | GCG 1 2 2 2 2 2 | GAG 6 6 6 6 6 6 | GGG 1 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 8 8 8 8 8 8 | Ser TCT 12 12 12 11 11 12 | Tyr TAT 12 12 12 13 14 12 | Cys TGT 2 2 2 2 2 2
TTC 3 3 3 3 3 3 | TCC 1 1 1 1 1 1 | TAC 3 3 3 2 1 3 | TGC 6 6 6 6 6 6
Leu TTA 3 3 3 3 3 3 | TCA 4 4 4 4 5 4 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 9 9 9 9 9 9 | TCG 2 2 2 2 0 2 | TAG 0 0 0 0 0 0 | Trp TGG 4 4 4 4 4 4
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 10 10 10 10 9 10 | Pro CCT 3 3 3 3 3 3 | His CAT 4 4 4 5 5 4 | Arg CGT 4 4 4 4 4 4
CTC 2 2 2 2 3 2 | CCC 0 0 0 0 0 0 | CAC 3 3 3 2 2 3 | CGC 4 4 4 4 4 4
CTA 2 2 2 2 3 2 | CCA 2 2 2 3 2 2 | Gln CAA 7 7 7 7 7 7 | CGA 1 1 1 1 1 1
CTG 2 2 2 2 1 2 | CCG 1 1 1 0 1 1 | CAG 4 4 4 4 4 4 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 8 8 8 8 8 8 | Thr ACT 9 9 9 9 8 9 | Asn AAT 16 16 16 17 17 16 | Ser AGT 4 4 4 4 4 4
ATC 3 3 3 2 2 3 | ACC 5 5 5 5 6 5 | AAC 5 5 5 4 4 5 | AGC 2 2 2 2 2 2
ATA 5 5 5 5 5 5 | ACA 5 6 5 6 6 6 | Lys AAA 0 0 0 0 0 0 | Arg AGA 2 2 2 2 2 2
Met ATG 7 7 7 8 7 7 | ACG 2 1 2 1 2 1 | AAG 7 7 7 7 7 7 | AGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 22 22 22 21 21 22 | Ala GCT 10 10 10 11 12 10 | Asp GAT 7 7 7 7 7 7 | Gly GGT 23 23 23 24 23 23
GTC 1 1 1 1 1 1 | GCC 2 2 2 2 2 2 | GAC 4 4 4 4 4 4 | GGC 9 9 9 9 10 9
GTA 4 4 4 4 3 4 | GCA 5 5 5 5 5 5 | Glu GAA 4 4 4 4 3 4 | GGA 1 1 1 1 1 1
GTG 2 2 2 2 3 2 | GCG 2 2 2 2 2 2 | GAG 6 6 6 6 7 6 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 8 8 9 8 8 8 | Ser TCT 11 11 11 10 11 12 | Tyr TAT 13 12 13 11 13 12 | Cys TGT 2 2 2 3 2 2
TTC 3 3 3 3 3 3 | TCC 1 1 1 2 1 1 | TAC 2 3 2 3 2 3 | TGC 6 6 6 5 6 6
Leu TTA 3 3 3 3 3 3 | TCA 4 4 4 4 4 4 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 9 9 9 9 9 9 | TCG 2 2 2 2 2 2 | TAG 0 0 0 0 0 0 | Trp TGG 4 4 4 4 4 4
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 10 10 9 9 10 10 | Pro CCT 3 3 3 3 3 3 | His CAT 5 4 4 6 5 4 | Arg CGT 4 4 4 4 4 4
CTC 2 2 2 3 2 2 | CCC 0 0 0 1 0 0 | CAC 2 3 3 2 2 3 | CGC 4 4 4 4 4 4
CTA 2 2 2 2 2 2 | CCA 3 2 2 1 2 2 | Gln CAA 7 7 7 7 7 7 | CGA 1 1 1 1 1 1
CTG 2 2 2 2 2 2 | CCG 0 1 1 1 1 1 | CAG 4 4 4 4 4 4 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 9 8 8 9 10 8 | Thr ACT 9 9 9 7 10 9 | Asn AAT 17 16 16 17 17 16 | Ser AGT 4 4 4 5 4 4
ATC 1 2 2 2 1 3 | ACC 5 5 5 5 4 5 | AAC 4 5 5 4 4 5 | AGC 2 2 2 2 2 2
ATA 5 5 5 5 5 5 | ACA 6 6 6 7 6 6 | Lys AAA 0 0 0 0 0 0 | Arg AGA 2 2 2 2 2 2
Met ATG 8 8 8 8 7 7 | ACG 1 1 1 1 1 1 | AAG 7 7 7 7 7 7 | AGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 21 22 22 20 20 22 | Ala GCT 11 11 11 12 11 10 | Asp GAT 7 7 7 8 7 7 | Gly GGT 24 22 23 21 22 23
GTC 1 1 1 2 2 1 | GCC 2 2 2 2 2 2 | GAC 4 4 4 3 4 4 | GGC 9 9 9 10 11 9
GTA 4 4 4 2 3 4 | GCA 5 5 5 6 5 5 | Glu GAA 4 4 4 4 4 4 | GGA 1 2 1 1 1 1
GTG 2 2 2 3 3 2 | GCG 2 2 2 1 2 2 | GAG 6 6 6 6 6 6 | GGG 0 0 0 1 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 8 8 8 8 8 8 | Ser TCT 12 11 12 12 11 12 | Tyr TAT 12 13 12 12 13 12 | Cys TGT 2 2 2 2 2 2
TTC 3 3 3 3 3 3 | TCC 1 1 1 1 1 1 | TAC 3 2 3 3 2 3 | TGC 6 6 6 6 6 6
Leu TTA 3 3 3 3 3 3 | TCA 4 4 4 4 4 4 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 9 8 9 9 9 9 | TCG 2 2 2 2 2 2 | TAG 0 0 0 0 0 0 | Trp TGG 4 5 4 4 4 4
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 10 10 11 10 10 10 | Pro CCT 3 3 3 3 3 3 | His CAT 4 5 4 4 5 4 | Arg CGT 4 4 4 4 4 4
CTC 2 2 2 2 2 2 | CCC 0 0 0 0 0 0 | CAC 3 2 3 3 2 3 | CGC 4 4 4 4 4 4
CTA 2 2 2 2 2 2 | CCA 2 3 2 2 3 2 | Gln CAA 7 7 7 7 7 7 | CGA 1 1 1 1 1 1
CTG 2 2 2 2 2 2 | CCG 1 0 1 1 0 1 | CAG 4 4 4 4 4 4 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 8 9 7 9 9 8 | Thr ACT 9 9 9 8 9 9 | Asn AAT 16 16 16 16 17 16 | Ser AGT 4 4 4 4 4 4
ATC 3 1 3 2 1 3 | ACC 5 5 5 5 5 5 | AAC 5 4 5 5 4 5 | AGC 2 2 2 2 2 2
ATA 5 5 5 5 5 5 | ACA 5 6 6 6 6 5 | Lys AAA 0 0 0 0 0 0 | Arg AGA 2 2 2 2 2 2
Met ATG 7 8 7 8 8 7 | ACG 2 1 1 1 1 2 | AAG 7 8 7 7 7 7 | AGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 22 21 22 22 21 22 | Ala GCT 10 11 10 10 11 10 | Asp GAT 7 7 7 7 7 7 | Gly GGT 23 24 23 23 24 23
GTC 1 1 1 1 1 1 | GCC 2 2 2 2 2 2 | GAC 4 4 4 4 4 4 | GGC 9 8 9 9 9 9
GTA 4 4 4 4 4 4 | GCA 5 5 5 5 5 5 | Glu GAA 4 4 4 4 4 4 | GGA 1 2 1 1 1 1
GTG 2 2 2 2 2 2 | GCG 2 2 2 2 2 2 | GAG 6 6 6 6 6 6 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C312
position 1: T:0.22517 C:0.16887 A:0.28146 G:0.32450
position 2: T:0.30795 C:0.21523 A:0.27483 G:0.20199
position 3: T:0.48675 C:0.17881 A:0.15894 G:0.17550
Average T:0.33996 C:0.18764 A:0.23841 G:0.23400
#2: C627
position 1: T:0.22848 C:0.16225 A:0.27152 G:0.33775
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50993 C:0.17550 A:0.15232 G:0.16225
Average T:0.34658 C:0.18433 A:0.23179 G:0.23731
#3: C628
position 1: T:0.22848 C:0.16225 A:0.27152 G:0.33775
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50993 C:0.17550 A:0.15232 G:0.16225
Average T:0.34658 C:0.18433 A:0.23179 G:0.23731
#4: C545
position 1: T:0.22848 C:0.16225 A:0.27152 G:0.33775
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50993 C:0.17550 A:0.15232 G:0.16225
Average T:0.34658 C:0.18433 A:0.23179 G:0.23731
#5: C284
position 1: T:0.23179 C:0.16225 A:0.27152 G:0.33444
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50993 C:0.17550 A:0.15232 G:0.16225
Average T:0.34768 C:0.18433 A:0.23179 G:0.23620
#6: C389
position 1: T:0.22848 C:0.16225 A:0.26821 G:0.34106
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50993 C:0.17550 A:0.15232 G:0.16225
Average T:0.34658 C:0.18433 A:0.23068 G:0.23841
#7: C117
position 1: T:0.22185 C:0.16556 A:0.27483 G:0.33775
position 2: T:0.29801 C:0.21523 A:0.27152 G:0.21523
position 3: T:0.50662 C:0.17550 A:0.14901 G:0.16887
Average T:0.34216 C:0.18543 A:0.23179 G:0.24062
#8: C60
position 1: T:0.22848 C:0.16225 A:0.27152 G:0.33775
position 2: T:0.30132 C:0.21523 A:0.27483 G:0.20861
position 3: T:0.51656 C:0.16556 A:0.15894 G:0.15894
Average T:0.34879 C:0.18102 A:0.23510 G:0.23510
#9: C561
position 1: T:0.22848 C:0.16225 A:0.27152 G:0.33775
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50993 C:0.17550 A:0.14901 G:0.16556
Average T:0.34658 C:0.18433 A:0.23068 G:0.23841
#10: C380
position 1: T:0.22517 C:0.16225 A:0.27152 G:0.34106
position 2: T:0.29801 C:0.21523 A:0.27152 G:0.21523
position 3: T:0.52649 C:0.15563 A:0.15563 G:0.16225
Average T:0.34989 C:0.17770 A:0.23289 G:0.23951
#11: C619
position 1: T:0.22848 C:0.16225 A:0.27152 G:0.33775
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50993 C:0.17550 A:0.15232 G:0.16225
Average T:0.34658 C:0.18433 A:0.23179 G:0.23731
#12: C65
position 1: T:0.22517 C:0.16225 A:0.27152 G:0.34106
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50662 C:0.17550 A:0.15232 G:0.16556
Average T:0.34437 C:0.18433 A:0.23179 G:0.23951
#13: C295
position 1: T:0.22848 C:0.16225 A:0.27152 G:0.33775
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50993 C:0.17550 A:0.14901 G:0.16556
Average T:0.34658 C:0.18433 A:0.23068 G:0.23841
#14: C68
position 1: T:0.22848 C:0.16225 A:0.27152 G:0.33775
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50993 C:0.17550 A:0.15232 G:0.16225
Average T:0.34658 C:0.18433 A:0.23179 G:0.23731
#15: C165
position 1: T:0.22848 C:0.16225 A:0.27152 G:0.33775
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50993 C:0.17550 A:0.14901 G:0.16556
Average T:0.34658 C:0.18433 A:0.23068 G:0.23841
#16: C93
position 1: T:0.22517 C:0.16225 A:0.27152 G:0.34106
position 2: T:0.29801 C:0.21523 A:0.27152 G:0.21523
position 3: T:0.51987 C:0.16225 A:0.15563 G:0.16225
Average T:0.34768 C:0.17991 A:0.23289 G:0.23951
#17: C196
position 1: T:0.22185 C:0.16225 A:0.27152 G:0.34437
position 2: T:0.29470 C:0.21854 A:0.27152 G:0.21523
position 3: T:0.51656 C:0.16887 A:0.15232 G:0.16225
Average T:0.34437 C:0.18322 A:0.23179 G:0.24062
#18: C597
position 1: T:0.22848 C:0.16225 A:0.27152 G:0.33775
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50993 C:0.17550 A:0.15232 G:0.16225
Average T:0.34658 C:0.18433 A:0.23179 G:0.23731
#19: C315
position 1: T:0.22517 C:0.16225 A:0.27152 G:0.34106
position 2: T:0.29801 C:0.21523 A:0.27152 G:0.21523
position 3: T:0.52318 C:0.15894 A:0.15563 G:0.16225
Average T:0.34879 C:0.17881 A:0.23289 G:0.23951
#20: C129
position 1: T:0.22517 C:0.16225 A:0.27152 G:0.34106
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50662 C:0.17219 A:0.15563 G:0.16556
Average T:0.34437 C:0.18322 A:0.23289 G:0.23951
#21: C75
position 1: T:0.22848 C:0.15894 A:0.27152 G:0.34106
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.51325 C:0.16887 A:0.15232 G:0.16556
Average T:0.34768 C:0.18102 A:0.23179 G:0.23951
#22: C208
position 1: T:0.22185 C:0.16556 A:0.27483 G:0.33775
position 2: T:0.29801 C:0.21523 A:0.27152 G:0.21523
position 3: T:0.50662 C:0.17550 A:0.14901 G:0.16887
Average T:0.34216 C:0.18543 A:0.23179 G:0.24062
#23: C381
position 1: T:0.22517 C:0.16225 A:0.27152 G:0.34106
position 2: T:0.29801 C:0.21523 A:0.27152 G:0.21523
position 3: T:0.51987 C:0.16556 A:0.14901 G:0.16556
Average T:0.34768 C:0.18102 A:0.23068 G:0.24062
#24: C584
position 1: T:0.22848 C:0.16225 A:0.27152 G:0.33775
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50993 C:0.17550 A:0.15232 G:0.16225
Average T:0.34658 C:0.18433 A:0.23179 G:0.23731
#25: C493
position 1: T:0.22848 C:0.16225 A:0.27152 G:0.33775
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50993 C:0.17550 A:0.14901 G:0.16556
Average T:0.34658 C:0.18433 A:0.23068 G:0.23841
#26: C337
position 1: T:0.22517 C:0.16225 A:0.27152 G:0.34106
position 2: T:0.29470 C:0.21523 A:0.27152 G:0.21854
position 3: T:0.51987 C:0.15563 A:0.15894 G:0.16556
Average T:0.34658 C:0.17770 A:0.23400 G:0.24172
#27: C651
position 1: T:0.22848 C:0.16556 A:0.26821 G:0.33775
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50993 C:0.17550 A:0.15232 G:0.16225
Average T:0.34658 C:0.18543 A:0.23068 G:0.23731
#28: C596
position 1: T:0.22848 C:0.16225 A:0.27152 G:0.33775
position 2: T:0.30464 C:0.21192 A:0.27152 G:0.21192
position 3: T:0.50993 C:0.17219 A:0.15232 G:0.16556
Average T:0.34768 C:0.18212 A:0.23179 G:0.23841
#29: C411
position 1: T:0.22517 C:0.16225 A:0.27152 G:0.34106
position 2: T:0.29801 C:0.21523 A:0.27152 G:0.21523
position 3: T:0.52318 C:0.15894 A:0.15563 G:0.16225
Average T:0.34879 C:0.17881 A:0.23289 G:0.23951
#30: C224
position 1: T:0.22848 C:0.16225 A:0.27152 G:0.33775
position 2: T:0.30132 C:0.21523 A:0.27152 G:0.21192
position 3: T:0.50993 C:0.17550 A:0.14901 G:0.16556
Average T:0.34658 C:0.18433 A:0.23068 G:0.23841
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 243 | Ser S TCT 345 | Tyr Y TAT 367 | Cys C TGT 63
TTC 90 | TCC 32 | TAC 81 | TGC 178
Leu L TTA 90 | TCA 121 | *** * TAA 0 | *** * TGA 0
TTG 269 | TCG 58 | TAG 0 | Trp W TGG 119
------------------------------------------------------------------------------
Leu L CTT 296 | Pro P CCT 90 | His H CAT 131 | Arg R CGT 120
CTC 64 | CCC 3 | CAC 81 | CGC 120
CTA 61 | CCA 64 | Gln Q CAA 211 | CGA 30
CTG 59 | CCG 26 | CAG 118 | CGG 0
------------------------------------------------------------------------------
Ile I ATT 249 | Thr T ACT 265 | Asn N AAT 488 | Ser S AGT 121
ATC 72 | ACC 150 | AAC 139 | AGC 60
ATA 149 | ACA 177 | Lys K AAA 4 | Arg R AGA 58
Met M ATG 221 | ACG 36 | AAG 214 | AGG 60
------------------------------------------------------------------------------
Val V GTT 646 | Ala A GCT 313 | Asp D GAT 211 | Gly G GGT 688
GTC 34 | GCC 60 | GAC 117 | GGC 272
GTA 115 | GCA 152 | Glu E GAA 120 | GGA 31
GTG 64 | GCG 58 | GAG 180 | GGG 6
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.22693 C:0.16269 A:0.27185 G:0.33852
position 2: T:0.30044 C:0.21523 A:0.27174 G:0.21258
position 3: T:0.51170 C:0.17141 A:0.15265 G:0.16424
Average T:0.34636 C:0.18311 A:0.23208 G:0.23845
Model 1: NearlyNeutral (2 categories)
TREE # 1: (12, 21, 20, (((17, (22, 7)), 23), (16, 26, 10, 19, 29)), ((11, (13, 30, 25, 9), 18, 27, 4, (8, 5), 1, 3, 2, 6, 14, 15, 24), 28)); MP score: 90
lnL(ntime: 39 np: 42): -1784.403454 +0.000000
31..12 31..21 31..20 31..32 32..33 33..34 34..17 34..35 35..22 35..7 33..23 32..36 36..16 36..26 36..10 36..19 36..29 31..37 37..38 38..11 38..39 39..13 39..30 39..25 39..9 38..18 38..27 38..4 38..40 40..8 40..5 38..1 38..3 38..2 38..6 38..14 38..15 38..24 37..28
0.003444 0.006903 0.003449 0.013872 0.010745 0.002239 0.036527 0.058336 0.000004 0.000004 0.021126 0.007069 0.003454 0.010460 0.003457 0.000004 0.000004 0.003458 0.003464 0.000004 0.003450 0.000004 0.000004 0.000004 0.000004 0.000004 0.003464 0.000004 0.003380 0.017548 0.007003 0.091300 0.000004 0.000004 0.003447 0.000004 0.003450 0.000004 0.003456 2.240230 0.913321 0.105693
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.324560
(12: 0.003444, 21: 0.006903, 20: 0.003449, (((17: 0.036527, (22: 0.000004, 7: 0.000004): 0.058336): 0.002239, 23: 0.021126): 0.010745, (16: 0.003454, 26: 0.010460, 10: 0.003457, 19: 0.000004, 29: 0.000004): 0.007069): 0.013872, ((11: 0.000004, (13: 0.000004, 30: 0.000004, 25: 0.000004, 9: 0.000004): 0.003450, 18: 0.000004, 27: 0.003464, 4: 0.000004, (8: 0.017548, 5: 0.007003): 0.003380, 1: 0.091300, 3: 0.000004, 2: 0.000004, 6: 0.003447, 14: 0.000004, 15: 0.003450, 24: 0.000004): 0.003464, 28: 0.003456): 0.003458);
(C65: 0.003444, C75: 0.006903, C129: 0.003449, (((C196: 0.036527, (C208: 0.000004, C117: 0.000004): 0.058336): 0.002239, C381: 0.021126): 0.010745, (C93: 0.003454, C337: 0.010460, C380: 0.003457, C315: 0.000004, C411: 0.000004): 0.007069): 0.013872, ((C619: 0.000004, (C295: 0.000004, C224: 0.000004, C493: 0.000004, C561: 0.000004): 0.003450, C597: 0.000004, C651: 0.003464, C545: 0.000004, (C60: 0.017548, C284: 0.007003): 0.003380, C312: 0.091300, C628: 0.000004, C627: 0.000004, C389: 0.003447, C68: 0.000004, C165: 0.003450, C584: 0.000004): 0.003464, C596: 0.003456): 0.003458);
Detailed output identifying parameters
kappa (ts/tv) = 2.24023
MLEs of dN/dS (w) for site classes (K=2)
p: 0.91332 0.08668
w: 0.10569 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.003 724.8 181.2 0.1832 0.0006 0.0033 0.4 0.6
31..21 0.007 724.8 181.2 0.1832 0.0012 0.0066 0.9 1.2
31..20 0.003 724.8 181.2 0.1832 0.0006 0.0033 0.4 0.6
31..32 0.014 724.8 181.2 0.1832 0.0024 0.0133 1.8 2.4
32..33 0.011 724.8 181.2 0.1832 0.0019 0.0103 1.4 1.9
33..34 0.002 724.8 181.2 0.1832 0.0004 0.0022 0.3 0.4
34..17 0.037 724.8 181.2 0.1832 0.0064 0.0351 4.7 6.4
34..35 0.058 724.8 181.2 0.1832 0.0103 0.0561 7.4 10.2
35..22 0.000 724.8 181.2 0.1832 0.0000 0.0000 0.0 0.0
35..7 0.000 724.8 181.2 0.1832 0.0000 0.0000 0.0 0.0
33..23 0.021 724.8 181.2 0.1832 0.0037 0.0203 2.7 3.7
32..36 0.007 724.8 181.2 0.1832 0.0012 0.0068 0.9 1.2
36..16 0.003 724.8 181.2 0.1832 0.0006 0.0033 0.4 0.6
36..26 0.010 724.8 181.2 0.1832 0.0018 0.0101 1.3 1.8
36..10 0.003 724.8 181.2 0.1832 0.0006 0.0033 0.4 0.6
36..19 0.000 724.8 181.2 0.1832 0.0000 0.0000 0.0 0.0
36..29 0.000 724.8 181.2 0.1832 0.0000 0.0000 0.0 0.0
31..37 0.003 724.8 181.2 0.1832 0.0006 0.0033 0.4 0.6
37..38 0.003 724.8 181.2 0.1832 0.0006 0.0033 0.4 0.6
38..11 0.000 724.8 181.2 0.1832 0.0000 0.0000 0.0 0.0
38..39 0.003 724.8 181.2 0.1832 0.0006 0.0033 0.4 0.6
39..13 0.000 724.8 181.2 0.1832 0.0000 0.0000 0.0 0.0
39..30 0.000 724.8 181.2 0.1832 0.0000 0.0000 0.0 0.0
39..25 0.000 724.8 181.2 0.1832 0.0000 0.0000 0.0 0.0
39..9 0.000 724.8 181.2 0.1832 0.0000 0.0000 0.0 0.0
38..18 0.000 724.8 181.2 0.1832 0.0000 0.0000 0.0 0.0
38..27 0.003 724.8 181.2 0.1832 0.0006 0.0033 0.4 0.6
38..4 0.000 724.8 181.2 0.1832 0.0000 0.0000 0.0 0.0
38..40 0.003 724.8 181.2 0.1832 0.0006 0.0033 0.4 0.6
40..8 0.018 724.8 181.2 0.1832 0.0031 0.0169 2.2 3.1
40..5 0.007 724.8 181.2 0.1832 0.0012 0.0067 0.9 1.2
38..1 0.091 724.8 181.2 0.1832 0.0161 0.0878 11.7 15.9
38..3 0.000 724.8 181.2 0.1832 0.0000 0.0000 0.0 0.0
38..2 0.000 724.8 181.2 0.1832 0.0000 0.0000 0.0 0.0
38..6 0.003 724.8 181.2 0.1832 0.0006 0.0033 0.4 0.6
38..14 0.000 724.8 181.2 0.1832 0.0000 0.0000 0.0 0.0
38..15 0.003 724.8 181.2 0.1832 0.0006 0.0033 0.4 0.6
38..24 0.000 724.8 181.2 0.1832 0.0000 0.0000 0.0 0.0
37..28 0.003 724.8 181.2 0.1832 0.0006 0.0033 0.4 0.6
Time used: 2:03
Model 2: PositiveSelection (3 categories)
TREE # 1: (12, 21, 20, (((17, (22, 7)), 23), (16, 26, 10, 19, 29)), ((11, (13, 30, 25, 9), 18, 27, 4, (8, 5), 1, 3, 2, 6, 14, 15, 24), 28)); MP score: 90
check convergence..
lnL(ntime: 39 np: 44): -1784.403405 +0.000000
31..12 31..21 31..20 31..32 32..33 33..34 34..17 34..35 35..22 35..7 33..23 32..36 36..16 36..26 36..10 36..19 36..29 31..37 37..38 38..11 38..39 39..13 39..30 39..25 39..9 38..18 38..27 38..4 38..40 40..8 40..5 38..1 38..3 38..2 38..6 38..14 38..15 38..24 37..28
0.003444 0.006903 0.003449 0.013872 0.010745 0.002240 0.036529 0.058339 0.000004 0.000004 0.021125 0.007069 0.003454 0.010460 0.003457 0.000004 0.000004 0.003458 0.003464 0.000004 0.003450 0.000004 0.000004 0.000004 0.000004 0.000004 0.003465 0.000004 0.003380 0.017550 0.007003 0.091306 0.000004 0.000004 0.003447 0.000004 0.003450 0.000004 0.003456 2.240392 0.914188 0.085294 0.106152 1.867827
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.324576
(12: 0.003444, 21: 0.006903, 20: 0.003449, (((17: 0.036529, (22: 0.000004, 7: 0.000004): 0.058339): 0.002240, 23: 0.021125): 0.010745, (16: 0.003454, 26: 0.010460, 10: 0.003457, 19: 0.000004, 29: 0.000004): 0.007069): 0.013872, ((11: 0.000004, (13: 0.000004, 30: 0.000004, 25: 0.000004, 9: 0.000004): 0.003450, 18: 0.000004, 27: 0.003465, 4: 0.000004, (8: 0.017550, 5: 0.007003): 0.003380, 1: 0.091306, 3: 0.000004, 2: 0.000004, 6: 0.003447, 14: 0.000004, 15: 0.003450, 24: 0.000004): 0.003464, 28: 0.003456): 0.003458);
(C65: 0.003444, C75: 0.006903, C129: 0.003449, (((C196: 0.036529, (C208: 0.000004, C117: 0.000004): 0.058339): 0.002240, C381: 0.021125): 0.010745, (C93: 0.003454, C337: 0.010460, C380: 0.003457, C315: 0.000004, C411: 0.000004): 0.007069): 0.013872, ((C619: 0.000004, (C295: 0.000004, C224: 0.000004, C493: 0.000004, C561: 0.000004): 0.003450, C597: 0.000004, C651: 0.003465, C545: 0.000004, (C60: 0.017550, C284: 0.007003): 0.003380, C312: 0.091306, C628: 0.000004, C627: 0.000004, C389: 0.003447, C68: 0.000004, C165: 0.003450, C584: 0.000004): 0.003464, C596: 0.003456): 0.003458);
Detailed output identifying parameters
kappa (ts/tv) = 2.24039
MLEs of dN/dS (w) for site classes (K=3)
p: 0.91419 0.08529 0.00052
w: 0.10615 1.00000 1.86783
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.003 724.8 181.2 0.1833 0.0006 0.0033 0.4 0.6
31..21 0.007 724.8 181.2 0.1833 0.0012 0.0066 0.9 1.2
31..20 0.003 724.8 181.2 0.1833 0.0006 0.0033 0.4 0.6
31..32 0.014 724.8 181.2 0.1833 0.0024 0.0133 1.8 2.4
32..33 0.011 724.8 181.2 0.1833 0.0019 0.0103 1.4 1.9
33..34 0.002 724.8 181.2 0.1833 0.0004 0.0022 0.3 0.4
34..17 0.037 724.8 181.2 0.1833 0.0064 0.0351 4.7 6.4
34..35 0.058 724.8 181.2 0.1833 0.0103 0.0561 7.5 10.2
35..22 0.000 724.8 181.2 0.1833 0.0000 0.0000 0.0 0.0
35..7 0.000 724.8 181.2 0.1833 0.0000 0.0000 0.0 0.0
33..23 0.021 724.8 181.2 0.1833 0.0037 0.0203 2.7 3.7
32..36 0.007 724.8 181.2 0.1833 0.0012 0.0068 0.9 1.2
36..16 0.003 724.8 181.2 0.1833 0.0006 0.0033 0.4 0.6
36..26 0.010 724.8 181.2 0.1833 0.0018 0.0101 1.3 1.8
36..10 0.003 724.8 181.2 0.1833 0.0006 0.0033 0.4 0.6
36..19 0.000 724.8 181.2 0.1833 0.0000 0.0000 0.0 0.0
36..29 0.000 724.8 181.2 0.1833 0.0000 0.0000 0.0 0.0
31..37 0.003 724.8 181.2 0.1833 0.0006 0.0033 0.4 0.6
37..38 0.003 724.8 181.2 0.1833 0.0006 0.0033 0.4 0.6
38..11 0.000 724.8 181.2 0.1833 0.0000 0.0000 0.0 0.0
38..39 0.003 724.8 181.2 0.1833 0.0006 0.0033 0.4 0.6
39..13 0.000 724.8 181.2 0.1833 0.0000 0.0000 0.0 0.0
39..30 0.000 724.8 181.2 0.1833 0.0000 0.0000 0.0 0.0
39..25 0.000 724.8 181.2 0.1833 0.0000 0.0000 0.0 0.0
39..9 0.000 724.8 181.2 0.1833 0.0000 0.0000 0.0 0.0
38..18 0.000 724.8 181.2 0.1833 0.0000 0.0000 0.0 0.0
38..27 0.003 724.8 181.2 0.1833 0.0006 0.0033 0.4 0.6
38..4 0.000 724.8 181.2 0.1833 0.0000 0.0000 0.0 0.0
38..40 0.003 724.8 181.2 0.1833 0.0006 0.0032 0.4 0.6
40..8 0.018 724.8 181.2 0.1833 0.0031 0.0169 2.2 3.1
40..5 0.007 724.8 181.2 0.1833 0.0012 0.0067 0.9 1.2
38..1 0.091 724.8 181.2 0.1833 0.0161 0.0878 11.7 15.9
38..3 0.000 724.8 181.2 0.1833 0.0000 0.0000 0.0 0.0
38..2 0.000 724.8 181.2 0.1833 0.0000 0.0000 0.0 0.0
38..6 0.003 724.8 181.2 0.1833 0.0006 0.0033 0.4 0.6
38..14 0.000 724.8 181.2 0.1833 0.0000 0.0000 0.0 0.0
38..15 0.003 724.8 181.2 0.1833 0.0006 0.0033 0.4 0.6
38..24 0.000 724.8 181.2 0.1833 0.0000 0.0000 0.0 0.0
37..28 0.003 724.8 181.2 0.1833 0.0006 0.0033 0.4 0.6
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C312)
Pr(w>1) post mean +- SE for w
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C312)
Pr(w>1) post mean +- SE for w
37 I 0.674 1.705 +- 0.964
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 0.465 0.534 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.700 0.203 0.061 0.020 0.008 0.003 0.002 0.001 0.001 0.000
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012 0.266
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.026 0.152 0.537
sum of density on p0-p1 = 1.000000
Time used: 6:49
Model 7: beta (10 categories)
TREE # 1: (12, 21, 20, (((17, (22, 7)), 23), (16, 26, 10, 19, 29)), ((11, (13, 30, 25, 9), 18, 27, 4, (8, 5), 1, 3, 2, 6, 14, 15, 24), 28)); MP score: 90
lnL(ntime: 39 np: 42): -1784.482120 +0.000000
31..12 31..21 31..20 31..32 32..33 33..34 34..17 34..35 35..22 35..7 33..23 32..36 36..16 36..26 36..10 36..19 36..29 31..37 37..38 38..11 38..39 39..13 39..30 39..25 39..9 38..18 38..27 38..4 38..40 40..8 40..5 38..1 38..3 38..2 38..6 38..14 38..15 38..24 37..28
0.003448 0.006909 0.003452 0.013872 0.010748 0.002209 0.036514 0.058240 0.000004 0.000004 0.021154 0.007072 0.003456 0.010471 0.003460 0.000004 0.000004 0.003459 0.003464 0.000004 0.003448 0.000004 0.000004 0.000004 0.000004 0.000004 0.003458 0.000004 0.003378 0.017535 0.006999 0.091329 0.000004 0.000004 0.003444 0.000004 0.003448 0.000004 0.003454 2.241065 0.297543 1.309961
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.324481
(12: 0.003448, 21: 0.006909, 20: 0.003452, (((17: 0.036514, (22: 0.000004, 7: 0.000004): 0.058240): 0.002209, 23: 0.021154): 0.010748, (16: 0.003456, 26: 0.010471, 10: 0.003460, 19: 0.000004, 29: 0.000004): 0.007072): 0.013872, ((11: 0.000004, (13: 0.000004, 30: 0.000004, 25: 0.000004, 9: 0.000004): 0.003448, 18: 0.000004, 27: 0.003458, 4: 0.000004, (8: 0.017535, 5: 0.006999): 0.003378, 1: 0.091329, 3: 0.000004, 2: 0.000004, 6: 0.003444, 14: 0.000004, 15: 0.003448, 24: 0.000004): 0.003464, 28: 0.003454): 0.003459);
(C65: 0.003448, C75: 0.006909, C129: 0.003452, (((C196: 0.036514, (C208: 0.000004, C117: 0.000004): 0.058240): 0.002209, C381: 0.021154): 0.010748, (C93: 0.003456, C337: 0.010471, C380: 0.003460, C315: 0.000004, C411: 0.000004): 0.007072): 0.013872, ((C619: 0.000004, (C295: 0.000004, C224: 0.000004, C493: 0.000004, C561: 0.000004): 0.003448, C597: 0.000004, C651: 0.003458, C545: 0.000004, (C60: 0.017535, C284: 0.006999): 0.003378, C312: 0.091329, C628: 0.000004, C627: 0.000004, C389: 0.003444, C68: 0.000004, C165: 0.003448, C584: 0.000004): 0.003464, C596: 0.003454): 0.003459);
Detailed output identifying parameters
kappa (ts/tv) = 2.24106
Parameters in M7 (beta):
p = 0.29754 q = 1.30996
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00003 0.00119 0.00665 0.02066 0.04841 0.09616 0.17187 0.28671 0.45928 0.73472
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.003 724.7 181.3 0.1826 0.0006 0.0033 0.4 0.6
31..21 0.007 724.7 181.3 0.1826 0.0012 0.0067 0.9 1.2
31..20 0.003 724.7 181.3 0.1826 0.0006 0.0033 0.4 0.6
31..32 0.014 724.7 181.3 0.1826 0.0024 0.0134 1.8 2.4
32..33 0.011 724.7 181.3 0.1826 0.0019 0.0104 1.4 1.9
33..34 0.002 724.7 181.3 0.1826 0.0004 0.0021 0.3 0.4
34..17 0.037 724.7 181.3 0.1826 0.0064 0.0352 4.7 6.4
34..35 0.058 724.7 181.3 0.1826 0.0102 0.0561 7.4 10.2
35..22 0.000 724.7 181.3 0.1826 0.0000 0.0000 0.0 0.0
35..7 0.000 724.7 181.3 0.1826 0.0000 0.0000 0.0 0.0
33..23 0.021 724.7 181.3 0.1826 0.0037 0.0204 2.7 3.7
32..36 0.007 724.7 181.3 0.1826 0.0012 0.0068 0.9 1.2
36..16 0.003 724.7 181.3 0.1826 0.0006 0.0033 0.4 0.6
36..26 0.010 724.7 181.3 0.1826 0.0018 0.0101 1.3 1.8
36..10 0.003 724.7 181.3 0.1826 0.0006 0.0033 0.4 0.6
36..19 0.000 724.7 181.3 0.1826 0.0000 0.0000 0.0 0.0
36..29 0.000 724.7 181.3 0.1826 0.0000 0.0000 0.0 0.0
31..37 0.003 724.7 181.3 0.1826 0.0006 0.0033 0.4 0.6
37..38 0.003 724.7 181.3 0.1826 0.0006 0.0033 0.4 0.6
38..11 0.000 724.7 181.3 0.1826 0.0000 0.0000 0.0 0.0
38..39 0.003 724.7 181.3 0.1826 0.0006 0.0033 0.4 0.6
39..13 0.000 724.7 181.3 0.1826 0.0000 0.0000 0.0 0.0
39..30 0.000 724.7 181.3 0.1826 0.0000 0.0000 0.0 0.0
39..25 0.000 724.7 181.3 0.1826 0.0000 0.0000 0.0 0.0
39..9 0.000 724.7 181.3 0.1826 0.0000 0.0000 0.0 0.0
38..18 0.000 724.7 181.3 0.1826 0.0000 0.0000 0.0 0.0
38..27 0.003 724.7 181.3 0.1826 0.0006 0.0033 0.4 0.6
38..4 0.000 724.7 181.3 0.1826 0.0000 0.0000 0.0 0.0
38..40 0.003 724.7 181.3 0.1826 0.0006 0.0033 0.4 0.6
40..8 0.018 724.7 181.3 0.1826 0.0031 0.0169 2.2 3.1
40..5 0.007 724.7 181.3 0.1826 0.0012 0.0067 0.9 1.2
38..1 0.091 724.7 181.3 0.1826 0.0161 0.0880 11.6 15.9
38..3 0.000 724.7 181.3 0.1826 0.0000 0.0000 0.0 0.0
38..2 0.000 724.7 181.3 0.1826 0.0000 0.0000 0.0 0.0
38..6 0.003 724.7 181.3 0.1826 0.0006 0.0033 0.4 0.6
38..14 0.000 724.7 181.3 0.1826 0.0000 0.0000 0.0 0.0
38..15 0.003 724.7 181.3 0.1826 0.0006 0.0033 0.4 0.6
38..24 0.000 724.7 181.3 0.1826 0.0000 0.0000 0.0 0.0
37..28 0.003 724.7 181.3 0.1826 0.0006 0.0033 0.4 0.6
Time used: 18:37
Model 8: beta&w>1 (11 categories)
TREE # 1: (12, 21, 20, (((17, (22, 7)), 23), (16, 26, 10, 19, 29)), ((11, (13, 30, 25, 9), 18, 27, 4, (8, 5), 1, 3, 2, 6, 14, 15, 24), 28)); MP score: 90
lnL(ntime: 39 np: 44): -1784.383044 +0.000000
31..12 31..21 31..20 31..32 32..33 33..34 34..17 34..35 35..22 35..7 33..23 32..36 36..16 36..26 36..10 36..19 36..29 31..37 37..38 38..11 38..39 39..13 39..30 39..25 39..9 38..18 38..27 38..4 38..40 40..8 40..5 38..1 38..3 38..2 38..6 38..14 38..15 38..24 37..28
0.003449 0.006913 0.003454 0.013886 0.010756 0.002227 0.036585 0.058357 0.000004 0.000004 0.021125 0.007077 0.003458 0.010474 0.003462 0.000004 0.000004 0.003463 0.003469 0.000004 0.003459 0.000004 0.000004 0.000004 0.000004 0.000004 0.003471 0.000004 0.003388 0.017593 0.007020 0.091531 0.000004 0.000004 0.003455 0.000004 0.003459 0.000004 0.003460 2.241506 0.987539 0.571405 2.923686 2.057139
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.325050
(12: 0.003449, 21: 0.006913, 20: 0.003454, (((17: 0.036585, (22: 0.000004, 7: 0.000004): 0.058357): 0.002227, 23: 0.021125): 0.010756, (16: 0.003458, 26: 0.010474, 10: 0.003462, 19: 0.000004, 29: 0.000004): 0.007077): 0.013886, ((11: 0.000004, (13: 0.000004, 30: 0.000004, 25: 0.000004, 9: 0.000004): 0.003459, 18: 0.000004, 27: 0.003471, 4: 0.000004, (8: 0.017593, 5: 0.007020): 0.003388, 1: 0.091531, 3: 0.000004, 2: 0.000004, 6: 0.003455, 14: 0.000004, 15: 0.003459, 24: 0.000004): 0.003469, 28: 0.003460): 0.003463);
(C65: 0.003449, C75: 0.006913, C129: 0.003454, (((C196: 0.036585, (C208: 0.000004, C117: 0.000004): 0.058357): 0.002227, C381: 0.021125): 0.010756, (C93: 0.003458, C337: 0.010474, C380: 0.003462, C315: 0.000004, C411: 0.000004): 0.007077): 0.013886, ((C619: 0.000004, (C295: 0.000004, C224: 0.000004, C493: 0.000004, C561: 0.000004): 0.003459, C597: 0.000004, C651: 0.003471, C545: 0.000004, (C60: 0.017593, C284: 0.007020): 0.003388, C312: 0.091531, C628: 0.000004, C627: 0.000004, C389: 0.003455, C68: 0.000004, C165: 0.003459, C584: 0.000004): 0.003469, C596: 0.003460): 0.003463);
Detailed output identifying parameters
kappa (ts/tv) = 2.24151
Parameters in M8 (beta&w>1):
p0 = 0.98754 p = 0.57141 q = 2.92369
(p1 = 0.01246) w = 2.05714
MLEs of dN/dS (w) for site classes (K=11)
p: 0.09875 0.09875 0.09875 0.09875 0.09875 0.09875 0.09875 0.09875 0.09875 0.09875 0.01246
w: 0.00159 0.01100 0.02744 0.05090 0.08212 0.12269 0.17552 0.24637 0.34881 0.53499 2.05714
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.003 724.7 181.3 0.1838 0.0006 0.0033 0.4 0.6
31..21 0.007 724.7 181.3 0.1838 0.0012 0.0066 0.9 1.2
31..20 0.003 724.7 181.3 0.1838 0.0006 0.0033 0.4 0.6
31..32 0.014 724.7 181.3 0.1838 0.0025 0.0133 1.8 2.4
32..33 0.011 724.7 181.3 0.1838 0.0019 0.0103 1.4 1.9
33..34 0.002 724.7 181.3 0.1838 0.0004 0.0021 0.3 0.4
34..17 0.037 724.7 181.3 0.1838 0.0065 0.0351 4.7 6.4
34..35 0.058 724.7 181.3 0.1838 0.0103 0.0560 7.5 10.2
35..22 0.000 724.7 181.3 0.1838 0.0000 0.0000 0.0 0.0
35..7 0.000 724.7 181.3 0.1838 0.0000 0.0000 0.0 0.0
33..23 0.021 724.7 181.3 0.1838 0.0037 0.0203 2.7 3.7
32..36 0.007 724.7 181.3 0.1838 0.0012 0.0068 0.9 1.2
36..16 0.003 724.7 181.3 0.1838 0.0006 0.0033 0.4 0.6
36..26 0.010 724.7 181.3 0.1838 0.0018 0.0101 1.3 1.8
36..10 0.003 724.7 181.3 0.1838 0.0006 0.0033 0.4 0.6
36..19 0.000 724.7 181.3 0.1838 0.0000 0.0000 0.0 0.0
36..29 0.000 724.7 181.3 0.1838 0.0000 0.0000 0.0 0.0
31..37 0.003 724.7 181.3 0.1838 0.0006 0.0033 0.4 0.6
37..38 0.003 724.7 181.3 0.1838 0.0006 0.0033 0.4 0.6
38..11 0.000 724.7 181.3 0.1838 0.0000 0.0000 0.0 0.0
38..39 0.003 724.7 181.3 0.1838 0.0006 0.0033 0.4 0.6
39..13 0.000 724.7 181.3 0.1838 0.0000 0.0000 0.0 0.0
39..30 0.000 724.7 181.3 0.1838 0.0000 0.0000 0.0 0.0
39..25 0.000 724.7 181.3 0.1838 0.0000 0.0000 0.0 0.0
39..9 0.000 724.7 181.3 0.1838 0.0000 0.0000 0.0 0.0
38..18 0.000 724.7 181.3 0.1838 0.0000 0.0000 0.0 0.0
38..27 0.003 724.7 181.3 0.1838 0.0006 0.0033 0.4 0.6
38..4 0.000 724.7 181.3 0.1838 0.0000 0.0000 0.0 0.0
38..40 0.003 724.7 181.3 0.1838 0.0006 0.0033 0.4 0.6
40..8 0.018 724.7 181.3 0.1838 0.0031 0.0169 2.3 3.1
40..5 0.007 724.7 181.3 0.1838 0.0012 0.0067 0.9 1.2
38..1 0.092 724.7 181.3 0.1838 0.0162 0.0879 11.7 15.9
38..3 0.000 724.7 181.3 0.1838 0.0000 0.0000 0.0 0.0
38..2 0.000 724.7 181.3 0.1838 0.0000 0.0000 0.0 0.0
38..6 0.003 724.7 181.3 0.1838 0.0006 0.0033 0.4 0.6
38..14 0.000 724.7 181.3 0.1838 0.0000 0.0000 0.0 0.0
38..15 0.003 724.7 181.3 0.1838 0.0006 0.0033 0.4 0.6
38..24 0.000 724.7 181.3 0.1838 0.0000 0.0000 0.0 0.0
37..28 0.003 724.7 181.3 0.1838 0.0006 0.0033 0.4 0.6
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C312)
Pr(w>1) post mean +- SE for w
37 I 0.667 1.525
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C312)
Pr(w>1) post mean +- SE for w
37 I 0.800 1.522 +- 0.623
224 I 0.502 1.129 +- 0.685
242 F 0.504 1.132 +- 0.683
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.985
p : 0.687 0.301 0.012 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.033 0.104 0.133 0.127 0.122 0.133 0.158 0.190
ws: 0.829 0.148 0.020 0.003 0.001 0.000 0.000 0.000 0.000 0.000
Time used: 36:18
Model 1: NearlyNeutral -1784.403454 Model 2: PositiveSelection -1784.403405 Model 7: beta -1784.482120 Model 8: beta&w>1 -1784.383044 Model 2 vs 1 .000098 Model 8 vs 7 .198152
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
