--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1532.72 -1558.23
2 -1532.53 -1563.14
--------------------------------------
TOTAL -1532.62 -1562.45
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.082739 0.000170 0.058873 0.108173 0.081693 1366.45 1430.87 1.001
r(A<->C){all} 0.138947 0.002694 0.049481 0.244073 0.133626 467.40 499.87 1.000
r(A<->G){all} 0.206684 0.003643 0.100408 0.328648 0.203263 412.69 440.44 1.001
r(A<->T){all} 0.021244 0.000259 0.000112 0.052659 0.017624 736.04 764.58 1.000
r(C<->G){all} 0.022645 0.000482 0.000028 0.066081 0.016052 588.27 622.46 1.001
r(C<->T){all} 0.522248 0.004724 0.388374 0.658400 0.523663 566.60 630.99 1.000
r(G<->T){all} 0.088232 0.000960 0.033792 0.150853 0.084717 507.55 643.64 1.000
pi(A){all} 0.199486 0.000191 0.171021 0.224560 0.199188 847.72 1037.71 1.001
pi(C){all} 0.181248 0.000167 0.156598 0.205652 0.181102 1171.41 1249.97 1.000
pi(G){all} 0.214315 0.000188 0.187417 0.241479 0.214298 968.45 1047.88 1.000
pi(T){all} 0.404951 0.000270 0.373708 0.437977 0.405219 1027.49 1097.17 1.001
alpha{1,2} 0.389585 0.365892 0.000105 1.494356 0.185571 624.66 800.82 1.000
alpha{3} 1.839187 1.473654 0.181159 4.345382 1.560764 1070.84 1219.18 1.000
pinvar{all} 0.325976 0.030697 0.000069 0.602949 0.331244 793.16 803.23 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -1448.508963
Model 2: PositiveSelection -1448.508963
Model 7: beta -1448.325223
Model 8: beta&w>1 -1448.326553
Model 2 vs 1 0
Model 8 vs 7 -.002660
-- Starting log on Thu Nov 17 16:37:14 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/LZW_nsp3_VIPR_ALG4_672096717_10190_11029_1_2012_02_China_Unknown_PEDV.result--
-- Starting log on Thu Nov 17 16:45:33 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/LZW_nsp3_VIPR_ALG4_672096717_10190_11029_1_2012_02_China_Unknown_PEDV.result--
-- Starting log on Fri Nov 18 02:21:12 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/LZW_nsp3_VIPR_ALG4_672096717_10190_11029_1_2012_02_China_Unknown_PEDV.result/gapped_alignment/codeml,LZW_nsp3_VIPR_ALG4_672096717_10190_11029_1_2012_02_China_Unknown_PEDV.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 30 taxa and 840 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C65
Taxon 2 -> C598
Taxon 3 -> C287
Taxon 4 -> C195
Taxon 5 -> C71
Taxon 6 -> C589
Taxon 7 -> C207
Taxon 8 -> C565
Taxon 9 -> C224
Taxon 10 -> C81
Taxon 11 -> C543
Taxon 12 -> C223
Taxon 13 -> C60
Taxon 14 -> C303
Taxon 15 -> C619
Taxon 16 -> C624
Taxon 17 -> C369
Taxon 18 -> C283
Taxon 19 -> C117
Taxon 20 -> C380
Taxon 21 -> C27
Taxon 22 -> C141
Taxon 23 -> C129
Taxon 24 -> C291
Taxon 25 -> C483
Taxon 26 -> C377
Taxon 27 -> C583
Taxon 28 -> C559
Taxon 29 -> C407
Taxon 30 -> C595
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1668738075
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 209298861
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 1382103868
Seed = 1371592635
Swapseed = 1668738075
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 13 unique site patterns
Division 2 has 8 unique site patterns
Division 3 has 35 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -2273.637189 -- 82.122948
Chain 2 -- -2277.461002 -- 82.122948
Chain 3 -- -2268.864746 -- 82.122948
Chain 4 -- -2270.772332 -- 82.122948
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -2278.391540 -- 82.122948
Chain 2 -- -2275.950263 -- 82.122948
Chain 3 -- -2265.230780 -- 82.122948
Chain 4 -- -2281.339274 -- 82.122948
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-2273.637] (-2277.461) (-2268.865) (-2270.772) * [-2278.392] (-2275.950) (-2265.231) (-2281.339)
1000 -- (-1639.113) (-1623.921) [-1608.547] (-1615.434) * [-1611.050] (-1644.203) (-1646.153) (-1640.507) -- 0:16:39
2000 -- (-1565.002) (-1589.429) (-1578.772) [-1555.045] * (-1582.543) (-1591.871) [-1573.743] (-1591.219) -- 0:16:38
3000 -- (-1560.534) (-1575.081) (-1559.246) [-1543.015] * (-1584.960) (-1567.727) (-1567.723) [-1573.547] -- 0:16:37
4000 -- (-1557.091) (-1575.648) (-1543.658) [-1547.499] * (-1567.362) (-1565.004) [-1553.976] (-1586.275) -- 0:16:36
5000 -- (-1557.196) (-1579.270) (-1552.766) [-1552.941] * (-1570.003) (-1551.789) [-1538.154] (-1564.232) -- 0:16:35
Average standard deviation of split frequencies: 0.081335
6000 -- (-1556.544) (-1567.146) (-1556.397) [-1550.743] * (-1546.966) [-1545.350] (-1544.028) (-1555.801) -- 0:16:34
7000 -- (-1564.234) (-1572.364) [-1557.425] (-1555.155) * (-1563.985) (-1553.866) (-1566.412) [-1554.309] -- 0:16:33
8000 -- [-1545.149] (-1558.956) (-1546.599) (-1571.261) * (-1561.847) (-1564.242) (-1553.423) [-1534.133] -- 0:16:32
9000 -- (-1562.171) (-1549.829) [-1539.486] (-1571.845) * (-1552.048) (-1559.836) (-1549.871) [-1548.595] -- 0:14:40
10000 -- (-1558.564) (-1560.155) [-1547.314] (-1563.656) * (-1546.271) (-1556.578) (-1570.147) [-1545.191] -- 0:14:51
Average standard deviation of split frequencies: 0.072506
11000 -- (-1567.123) (-1543.265) [-1535.437] (-1557.149) * (-1554.179) [-1543.542] (-1568.948) (-1546.865) -- 0:14:59
12000 -- [-1553.317] (-1549.084) (-1550.223) (-1544.237) * (-1551.464) (-1550.098) (-1553.169) [-1541.817] -- 0:15:05
13000 -- [-1548.054] (-1545.503) (-1556.161) (-1564.264) * (-1564.525) (-1546.058) (-1552.976) [-1542.354] -- 0:15:11
14000 -- [-1539.116] (-1544.877) (-1566.095) (-1546.350) * (-1569.133) [-1537.485] (-1549.298) (-1562.152) -- 0:15:15
15000 -- (-1544.610) (-1549.307) (-1554.759) [-1535.118] * (-1578.751) [-1541.200] (-1544.821) (-1570.509) -- 0:15:19
Average standard deviation of split frequencies: 0.067630
16000 -- (-1546.592) (-1554.843) (-1545.932) [-1536.937] * (-1561.631) [-1538.494] (-1536.918) (-1560.483) -- 0:15:22
17000 -- (-1545.618) (-1562.871) [-1544.764] (-1537.983) * (-1569.286) (-1547.990) (-1555.021) [-1543.098] -- 0:15:25
18000 -- [-1552.780] (-1540.288) (-1551.697) (-1549.691) * (-1559.338) (-1561.032) [-1558.551] (-1557.968) -- 0:15:27
19000 -- (-1556.481) (-1553.571) (-1544.460) [-1545.779] * (-1563.322) [-1551.729] (-1550.397) (-1555.746) -- 0:15:29
20000 -- (-1552.063) (-1552.838) (-1563.346) [-1538.411] * (-1550.490) (-1552.462) [-1531.795] (-1561.683) -- 0:15:31
Average standard deviation of split frequencies: 0.083860
21000 -- [-1542.493] (-1543.358) (-1548.713) (-1535.519) * (-1567.622) (-1548.123) [-1535.089] (-1556.590) -- 0:15:32
22000 -- (-1551.617) (-1559.493) [-1544.201] (-1546.287) * (-1557.818) (-1537.953) (-1544.127) [-1545.004] -- 0:15:33
23000 -- (-1535.359) [-1542.216] (-1559.334) (-1540.250) * (-1567.022) (-1532.733) [-1538.541] (-1537.227) -- 0:15:34
24000 -- (-1543.759) (-1551.458) (-1554.103) [-1535.349] * (-1553.693) (-1549.184) [-1537.134] (-1551.792) -- 0:15:35
25000 -- (-1543.012) (-1550.292) (-1564.709) [-1537.974] * (-1545.969) (-1557.373) (-1549.146) [-1548.665] -- 0:15:36
Average standard deviation of split frequencies: 0.061093
26000 -- (-1534.777) (-1545.878) (-1540.341) [-1545.445] * (-1554.291) (-1565.030) [-1539.882] (-1550.062) -- 0:15:36
27000 -- (-1566.462) [-1541.258] (-1536.202) (-1547.935) * (-1549.689) (-1546.577) (-1543.783) [-1537.353] -- 0:15:36
28000 -- [-1537.484] (-1555.105) (-1566.604) (-1543.506) * (-1570.131) (-1544.709) [-1543.243] (-1548.341) -- 0:15:37
29000 -- (-1553.479) (-1541.218) (-1553.533) [-1539.103] * (-1551.637) (-1542.791) (-1548.619) [-1541.368] -- 0:15:04
30000 -- [-1548.117] (-1564.321) (-1551.953) (-1547.116) * (-1545.272) [-1544.688] (-1540.990) (-1552.203) -- 0:15:05
Average standard deviation of split frequencies: 0.062297
31000 -- [-1545.997] (-1567.088) (-1562.022) (-1553.369) * [-1541.047] (-1570.414) (-1553.007) (-1559.279) -- 0:15:06
32000 -- (-1559.339) (-1556.489) (-1561.821) [-1542.066] * [-1538.111] (-1565.930) (-1544.190) (-1556.184) -- 0:15:07
33000 -- (-1563.365) (-1541.630) (-1531.367) [-1541.241] * (-1544.495) (-1571.865) [-1545.058] (-1566.790) -- 0:15:08
34000 -- (-1548.195) (-1560.738) (-1554.982) [-1548.964] * (-1545.916) (-1585.417) [-1542.286] (-1563.545) -- 0:15:09
35000 -- (-1556.513) (-1559.404) (-1552.462) [-1544.504] * (-1552.991) (-1576.293) [-1535.831] (-1541.073) -- 0:15:09
Average standard deviation of split frequencies: 0.061381
36000 -- (-1551.161) (-1561.474) (-1563.318) [-1530.475] * (-1547.089) (-1546.748) [-1540.498] (-1541.420) -- 0:15:10
37000 -- [-1545.606] (-1562.508) (-1542.267) (-1535.123) * (-1541.320) (-1556.151) [-1554.174] (-1546.231) -- 0:15:10
38000 -- (-1546.317) (-1544.913) (-1542.464) [-1541.417] * [-1546.188] (-1546.878) (-1566.734) (-1553.397) -- 0:15:11
39000 -- (-1554.166) (-1550.590) [-1546.943] (-1545.043) * [-1539.852] (-1580.772) (-1562.384) (-1548.388) -- 0:15:11
40000 -- (-1550.896) (-1560.187) (-1560.011) [-1548.867] * (-1547.183) (-1563.371) [-1559.772] (-1557.702) -- 0:15:12
Average standard deviation of split frequencies: 0.059159
41000 -- [-1551.229] (-1543.378) (-1561.184) (-1566.705) * [-1535.589] (-1563.475) (-1552.687) (-1562.659) -- 0:15:12
42000 -- (-1541.738) [-1548.994] (-1559.125) (-1542.257) * (-1547.617) (-1546.159) [-1537.393] (-1563.315) -- 0:15:12
43000 -- (-1550.191) [-1536.563] (-1552.707) (-1560.311) * (-1557.277) (-1554.619) [-1542.626] (-1557.874) -- 0:15:12
44000 -- (-1555.861) [-1546.735] (-1554.669) (-1546.340) * (-1567.660) (-1559.704) [-1542.951] (-1546.877) -- 0:15:12
45000 -- (-1538.233) (-1548.271) (-1531.323) [-1539.358] * (-1552.679) [-1554.135] (-1534.109) (-1548.162) -- 0:14:51
Average standard deviation of split frequencies: 0.047603
46000 -- (-1562.047) (-1537.105) [-1539.771] (-1553.020) * (-1552.051) (-1549.504) (-1554.932) [-1543.449] -- 0:14:51
47000 -- (-1559.790) [-1545.855] (-1556.396) (-1560.218) * (-1563.058) (-1537.413) (-1547.681) [-1540.437] -- 0:14:31
48000 -- (-1569.468) [-1546.327] (-1540.469) (-1544.628) * (-1571.699) (-1542.638) (-1548.086) [-1539.146] -- 0:14:32
49000 -- (-1560.149) (-1560.195) [-1547.758] (-1550.447) * (-1561.171) (-1543.296) [-1541.019] (-1553.813) -- 0:14:33
50000 -- (-1557.571) (-1531.439) (-1555.322) [-1539.874] * (-1556.907) (-1535.966) (-1546.239) [-1544.886] -- 0:14:15
Average standard deviation of split frequencies: 0.041558
51000 -- (-1553.922) [-1539.356] (-1564.356) (-1542.522) * (-1552.041) [-1554.332] (-1555.090) (-1565.137) -- 0:14:15
52000 -- (-1558.209) (-1553.570) [-1554.323] (-1543.208) * [-1544.290] (-1538.638) (-1552.355) (-1546.410) -- 0:13:58
53000 -- (-1558.050) (-1541.587) [-1555.572] (-1543.996) * (-1544.226) [-1533.931] (-1548.080) (-1554.291) -- 0:13:59
54000 -- (-1560.300) (-1549.366) [-1548.313] (-1550.986) * (-1537.810) (-1558.676) [-1531.770] (-1552.747) -- 0:14:00
55000 -- (-1551.487) (-1549.549) (-1542.819) [-1542.958] * (-1535.108) (-1556.791) [-1532.861] (-1540.873) -- 0:13:44
Average standard deviation of split frequencies: 0.035994
56000 -- (-1539.996) [-1541.036] (-1554.487) (-1569.821) * [-1538.701] (-1566.312) (-1544.830) (-1545.185) -- 0:13:46
57000 -- (-1545.983) [-1537.501] (-1546.910) (-1544.844) * (-1554.504) (-1571.544) (-1553.536) [-1541.113] -- 0:13:47
58000 -- (-1555.892) (-1550.129) (-1545.839) [-1540.160] * (-1538.337) [-1543.256] (-1569.748) (-1537.756) -- 0:13:48
59000 -- (-1541.378) (-1562.153) [-1543.673] (-1538.083) * [-1539.258] (-1554.332) (-1556.616) (-1556.713) -- 0:13:49
60000 -- (-1551.270) (-1560.093) [-1542.508] (-1555.585) * [-1538.784] (-1544.431) (-1557.863) (-1554.158) -- 0:13:50
Average standard deviation of split frequencies: 0.031082
61000 -- (-1560.385) (-1571.194) [-1542.553] (-1537.731) * [-1547.529] (-1542.445) (-1544.886) (-1562.799) -- 0:13:51
62000 -- [-1549.762] (-1566.598) (-1547.186) (-1546.744) * [-1554.406] (-1543.658) (-1544.042) (-1542.643) -- 0:13:52
63000 -- (-1560.810) (-1546.154) [-1543.767] (-1553.848) * (-1560.829) [-1545.516] (-1558.998) (-1542.024) -- 0:13:52
64000 -- [-1555.458] (-1545.543) (-1554.274) (-1547.937) * [-1549.889] (-1568.576) (-1557.820) (-1545.563) -- 0:13:53
65000 -- (-1560.822) (-1550.486) [-1547.575] (-1542.603) * (-1558.084) (-1569.103) (-1561.662) [-1549.598] -- 0:13:54
Average standard deviation of split frequencies: 0.033869
66000 -- (-1555.735) (-1550.622) (-1557.466) [-1548.317] * (-1553.701) (-1548.479) (-1554.581) [-1538.450] -- 0:13:54
67000 -- (-1546.202) [-1542.297] (-1568.698) (-1558.602) * (-1564.322) [-1539.491] (-1546.494) (-1558.145) -- 0:13:41
68000 -- (-1548.006) (-1538.454) [-1551.977] (-1555.693) * (-1579.946) [-1550.259] (-1549.580) (-1544.549) -- 0:13:42
69000 -- (-1549.004) [-1543.795] (-1565.175) (-1559.138) * (-1554.722) (-1551.900) (-1552.586) [-1539.252] -- 0:13:43
70000 -- [-1540.750] (-1553.236) (-1553.651) (-1563.655) * (-1556.775) (-1549.482) (-1557.055) [-1542.379] -- 0:13:43
Average standard deviation of split frequencies: 0.037955
71000 -- [-1545.858] (-1541.824) (-1570.167) (-1569.814) * (-1578.718) (-1543.931) [-1538.599] (-1545.933) -- 0:13:44
72000 -- (-1555.504) (-1558.675) [-1538.864] (-1571.347) * (-1565.339) [-1550.267] (-1556.502) (-1547.355) -- 0:13:44
73000 -- [-1550.041] (-1541.091) (-1544.276) (-1551.947) * (-1548.501) [-1537.118] (-1562.448) (-1536.885) -- 0:13:45
74000 -- (-1551.896) (-1560.399) (-1545.159) [-1532.690] * (-1546.054) (-1543.722) [-1552.970] (-1539.158) -- 0:13:45
75000 -- (-1561.003) [-1545.120] (-1553.468) (-1538.355) * (-1584.163) (-1543.139) (-1548.559) [-1543.076] -- 0:13:46
Average standard deviation of split frequencies: 0.043419
76000 -- (-1542.401) (-1541.815) (-1548.501) [-1537.335] * (-1583.773) (-1555.069) [-1539.730] (-1547.754) -- 0:13:46
77000 -- (-1550.369) (-1559.370) [-1547.234] (-1539.212) * (-1555.347) (-1553.554) (-1552.354) [-1542.887] -- 0:13:47
78000 -- (-1550.539) (-1555.776) [-1542.217] (-1537.358) * (-1545.339) (-1544.638) (-1544.797) [-1539.534] -- 0:13:47
79000 -- (-1548.203) (-1533.440) (-1556.798) [-1542.275] * (-1562.457) (-1555.217) [-1535.784] (-1537.967) -- 0:13:47
80000 -- (-1559.298) (-1541.190) [-1540.627] (-1534.020) * (-1554.176) (-1558.002) [-1538.916] (-1551.029) -- 0:13:36
Average standard deviation of split frequencies: 0.044872
81000 -- (-1550.783) [-1535.769] (-1562.169) (-1549.749) * (-1559.223) (-1542.663) [-1546.019] (-1556.020) -- 0:13:36
82000 -- (-1550.544) (-1544.882) (-1576.503) [-1531.384] * (-1554.711) (-1551.296) [-1553.121] (-1548.477) -- 0:13:37
83000 -- (-1550.980) (-1548.303) (-1558.659) [-1543.338] * [-1542.313] (-1561.221) (-1570.101) (-1548.556) -- 0:13:37
84000 -- (-1544.932) [-1542.556] (-1547.481) (-1546.226) * (-1542.233) (-1568.401) [-1542.303] (-1557.276) -- 0:13:37
85000 -- (-1545.152) (-1556.008) [-1555.163] (-1549.800) * (-1541.696) (-1550.628) [-1545.298] (-1564.363) -- 0:13:27
Average standard deviation of split frequencies: 0.038748
86000 -- (-1544.878) [-1545.268] (-1550.202) (-1549.088) * [-1551.884] (-1548.990) (-1557.806) (-1549.536) -- 0:13:27
87000 -- (-1542.343) (-1542.122) (-1555.489) [-1537.444] * (-1547.961) (-1542.938) (-1564.701) [-1533.798] -- 0:13:28
88000 -- (-1542.878) (-1565.096) (-1550.980) [-1538.057] * [-1539.672] (-1549.363) (-1579.112) (-1543.289) -- 0:13:28
89000 -- (-1545.650) (-1553.779) (-1568.213) [-1539.277] * [-1537.327] (-1564.201) (-1555.871) (-1541.818) -- 0:13:28
90000 -- (-1539.997) (-1552.703) (-1555.907) [-1540.627] * (-1543.632) (-1572.372) [-1538.953] (-1546.007) -- 0:13:28
Average standard deviation of split frequencies: 0.043266
91000 -- (-1552.841) (-1555.478) [-1551.909] (-1562.232) * (-1540.858) (-1553.242) (-1559.561) [-1544.966] -- 0:13:29
92000 -- [-1560.482] (-1562.969) (-1553.948) (-1540.814) * [-1547.699] (-1551.066) (-1567.575) (-1539.688) -- 0:13:19
93000 -- (-1574.021) [-1540.495] (-1562.072) (-1558.899) * [-1548.231] (-1546.169) (-1583.028) (-1556.488) -- 0:13:19
94000 -- (-1562.431) [-1539.066] (-1555.000) (-1543.951) * [-1543.295] (-1545.527) (-1571.655) (-1546.400) -- 0:13:19
95000 -- (-1559.304) [-1535.329] (-1551.086) (-1539.186) * [-1543.985] (-1550.495) (-1550.519) (-1544.089) -- 0:13:20
Average standard deviation of split frequencies: 0.043348
96000 -- (-1552.047) [-1540.017] (-1564.869) (-1543.869) * (-1552.060) (-1548.314) (-1551.593) [-1536.095] -- 0:13:20
97000 -- (-1556.063) [-1542.509] (-1550.792) (-1539.055) * (-1557.432) [-1546.164] (-1547.200) (-1548.258) -- 0:13:20
98000 -- (-1556.434) (-1548.175) [-1548.232] (-1545.132) * (-1551.061) [-1548.204] (-1554.338) (-1546.403) -- 0:13:20
99000 -- (-1536.985) (-1549.313) [-1543.856] (-1538.808) * [-1534.753] (-1549.746) (-1553.461) (-1552.303) -- 0:13:20
100000 -- (-1563.107) (-1538.827) [-1542.918] (-1543.866) * [-1533.493] (-1565.903) (-1544.041) (-1555.585) -- 0:13:21
Average standard deviation of split frequencies: 0.036526
101000 -- (-1567.621) (-1551.325) [-1536.835] (-1555.992) * (-1556.665) (-1560.601) [-1538.208] (-1544.415) -- 0:13:21
102000 -- (-1556.345) (-1542.183) [-1540.594] (-1549.721) * (-1552.052) (-1553.344) (-1551.543) [-1528.874] -- 0:13:21
103000 -- (-1547.737) [-1538.483] (-1559.072) (-1571.914) * (-1554.927) (-1551.705) (-1545.229) [-1537.758] -- 0:13:21
104000 -- (-1559.219) [-1536.113] (-1565.973) (-1559.799) * (-1562.555) (-1557.607) (-1561.981) [-1540.633] -- 0:13:21
105000 -- (-1557.960) [-1532.235] (-1544.840) (-1554.713) * (-1562.453) (-1540.832) (-1542.144) [-1531.470] -- 0:13:21
Average standard deviation of split frequencies: 0.034985
106000 -- (-1579.163) [-1546.663] (-1560.817) (-1550.348) * (-1557.336) [-1545.579] (-1540.851) (-1540.975) -- 0:13:12
107000 -- (-1568.309) [-1553.364] (-1555.725) (-1551.844) * (-1552.431) [-1543.601] (-1544.234) (-1553.144) -- 0:13:12
108000 -- (-1549.977) [-1556.144] (-1552.214) (-1544.842) * (-1557.562) [-1538.969] (-1562.320) (-1535.727) -- 0:13:12
109000 -- [-1549.759] (-1555.014) (-1549.265) (-1542.519) * (-1547.226) [-1536.351] (-1558.918) (-1549.636) -- 0:13:12
110000 -- (-1544.902) (-1557.183) (-1548.352) [-1542.495] * (-1557.028) [-1533.362] (-1561.285) (-1561.752) -- 0:13:12
Average standard deviation of split frequencies: 0.038190
111000 -- (-1559.408) [-1543.794] (-1547.114) (-1540.580) * (-1555.893) [-1544.533] (-1541.875) (-1544.831) -- 0:13:12
112000 -- (-1544.700) [-1554.759] (-1558.019) (-1545.103) * (-1536.259) (-1550.803) [-1558.434] (-1573.911) -- 0:13:12
113000 -- (-1556.145) (-1562.908) [-1547.356] (-1546.028) * [-1536.955] (-1540.651) (-1540.876) (-1570.121) -- 0:13:12
114000 -- (-1563.071) (-1554.517) (-1543.830) [-1536.091] * [-1539.665] (-1558.104) (-1546.753) (-1557.905) -- 0:13:12
115000 -- (-1546.450) (-1549.579) (-1550.099) [-1536.340] * (-1544.041) [-1542.981] (-1547.638) (-1544.099) -- 0:13:12
Average standard deviation of split frequencies: 0.036720
116000 -- (-1546.263) (-1564.113) [-1547.129] (-1539.003) * (-1561.466) [-1538.960] (-1561.725) (-1549.499) -- 0:13:12
117000 -- (-1561.142) [-1544.859] (-1545.597) (-1539.383) * (-1548.148) (-1545.008) [-1543.507] (-1547.270) -- 0:13:12
118000 -- (-1550.558) (-1553.528) (-1546.017) [-1535.960] * (-1557.764) (-1550.445) (-1551.056) [-1547.555] -- 0:13:12
119000 -- (-1540.823) (-1547.407) (-1559.330) [-1540.975] * (-1542.948) (-1559.743) [-1546.966] (-1554.969) -- 0:13:12
120000 -- [-1543.970] (-1574.142) (-1537.521) (-1553.429) * [-1552.564] (-1563.427) (-1556.927) (-1549.069) -- 0:13:12
Average standard deviation of split frequencies: 0.035160
121000 -- (-1552.550) (-1558.144) [-1541.128] (-1555.615) * (-1555.957) (-1552.395) (-1545.681) [-1543.315] -- 0:13:11
122000 -- (-1555.243) (-1566.911) [-1534.647] (-1548.386) * (-1549.852) [-1551.222] (-1555.190) (-1551.621) -- 0:13:11
123000 -- (-1548.750) [-1540.884] (-1550.059) (-1535.683) * (-1544.765) (-1547.269) [-1545.086] (-1552.496) -- 0:13:11
124000 -- [-1533.555] (-1538.985) (-1549.732) (-1537.298) * (-1546.459) (-1546.013) (-1556.354) [-1545.763] -- 0:13:11
125000 -- [-1537.580] (-1549.667) (-1546.943) (-1546.872) * [-1549.977] (-1546.832) (-1548.020) (-1536.953) -- 0:13:11
Average standard deviation of split frequencies: 0.030834
126000 -- (-1557.945) (-1544.768) [-1550.122] (-1547.015) * (-1558.555) (-1546.426) [-1557.654] (-1556.169) -- 0:13:10
127000 -- (-1552.816) (-1556.338) (-1550.505) [-1542.498] * (-1568.404) (-1543.713) [-1536.453] (-1544.028) -- 0:13:03
128000 -- (-1548.744) (-1566.864) [-1541.060] (-1531.671) * (-1557.143) [-1543.442] (-1542.269) (-1543.365) -- 0:13:03
129000 -- (-1544.654) (-1561.440) [-1547.125] (-1542.161) * [-1538.425] (-1544.370) (-1548.796) (-1549.195) -- 0:13:03
130000 -- [-1537.768] (-1557.665) (-1543.241) (-1549.428) * [-1549.978] (-1571.464) (-1544.730) (-1558.049) -- 0:13:03
Average standard deviation of split frequencies: 0.028088
131000 -- (-1539.354) (-1553.137) [-1545.969] (-1568.274) * (-1548.969) (-1557.104) [-1552.169] (-1544.176) -- 0:13:02
132000 -- [-1541.295] (-1552.514) (-1557.315) (-1577.453) * (-1543.265) (-1556.226) [-1546.545] (-1539.058) -- 0:13:02
133000 -- (-1556.652) (-1546.556) [-1542.071] (-1554.548) * (-1544.476) [-1550.646] (-1554.475) (-1565.476) -- 0:13:02
134000 -- (-1567.999) [-1561.559] (-1566.588) (-1554.499) * (-1548.445) [-1550.555] (-1549.497) (-1541.673) -- 0:13:01
135000 -- (-1545.638) (-1556.269) [-1562.794] (-1552.302) * (-1548.667) [-1556.219] (-1563.385) (-1551.196) -- 0:13:01
Average standard deviation of split frequencies: 0.027601
136000 -- [-1548.981] (-1549.495) (-1550.652) (-1555.449) * (-1547.205) (-1556.045) (-1566.945) [-1549.613] -- 0:13:01
137000 -- (-1555.877) (-1546.642) [-1545.577] (-1549.214) * (-1551.294) [-1550.975] (-1562.037) (-1538.694) -- 0:13:01
138000 -- (-1550.094) [-1542.501] (-1550.962) (-1556.728) * [-1529.654] (-1551.501) (-1549.717) (-1552.663) -- 0:13:00
139000 -- (-1550.385) (-1537.018) (-1542.824) [-1542.531] * (-1537.406) (-1558.863) [-1530.105] (-1551.982) -- 0:13:00
140000 -- [-1544.632] (-1534.068) (-1550.307) (-1551.978) * (-1549.292) [-1542.506] (-1539.059) (-1548.924) -- 0:13:00
Average standard deviation of split frequencies: 0.026189
141000 -- (-1548.261) [-1544.639] (-1554.045) (-1548.650) * (-1549.299) [-1543.585] (-1552.276) (-1544.285) -- 0:12:59
142000 -- [-1562.114] (-1552.860) (-1547.956) (-1550.738) * (-1539.357) [-1543.149] (-1565.195) (-1550.747) -- 0:12:59
143000 -- (-1566.914) [-1554.884] (-1555.064) (-1551.021) * (-1543.696) [-1545.310] (-1552.738) (-1553.798) -- 0:12:59
144000 -- [-1542.800] (-1553.899) (-1553.485) (-1553.271) * (-1552.442) [-1545.371] (-1542.958) (-1565.477) -- 0:12:58
145000 -- (-1563.365) [-1538.482] (-1550.746) (-1565.576) * (-1548.098) [-1538.533] (-1550.957) (-1575.889) -- 0:12:58
Average standard deviation of split frequencies: 0.025496
146000 -- (-1561.326) (-1542.151) (-1551.343) [-1554.715] * (-1537.958) [-1541.070] (-1556.313) (-1547.401) -- 0:12:57
147000 -- (-1559.265) (-1557.971) [-1547.083] (-1549.022) * (-1540.083) (-1554.811) [-1548.409] (-1543.841) -- 0:12:51
148000 -- (-1560.789) [-1537.053] (-1550.758) (-1540.547) * (-1548.405) [-1551.868] (-1552.765) (-1546.429) -- 0:12:51
149000 -- (-1558.070) (-1542.092) (-1556.515) [-1539.630] * (-1543.637) (-1548.241) (-1574.055) [-1537.532] -- 0:12:51
150000 -- (-1559.367) (-1546.172) (-1559.167) [-1546.870] * (-1554.843) (-1543.767) (-1571.086) [-1542.505] -- 0:12:50
Average standard deviation of split frequencies: 0.028830
151000 -- (-1546.056) [-1546.707] (-1565.344) (-1553.946) * (-1564.611) (-1543.368) [-1552.947] (-1537.732) -- 0:12:50
152000 -- (-1550.212) (-1553.024) [-1546.138] (-1539.840) * (-1566.450) (-1544.239) (-1548.938) [-1545.706] -- 0:12:49
153000 -- (-1553.528) (-1540.603) (-1568.046) [-1537.553] * (-1566.879) (-1542.249) (-1542.268) [-1552.471] -- 0:12:49
154000 -- (-1548.114) [-1536.541] (-1544.901) (-1545.895) * (-1571.604) [-1540.545] (-1534.013) (-1545.918) -- 0:12:49
155000 -- (-1538.517) (-1557.486) (-1558.696) [-1552.907] * (-1555.644) [-1545.049] (-1558.057) (-1548.576) -- 0:12:48
Average standard deviation of split frequencies: 0.028864
156000 -- (-1543.833) [-1546.482] (-1562.549) (-1565.039) * (-1566.957) (-1547.116) (-1546.019) [-1540.703] -- 0:12:48
157000 -- (-1561.917) [-1549.903] (-1554.560) (-1572.782) * (-1570.634) (-1547.447) (-1553.056) [-1547.818] -- 0:12:47
158000 -- (-1547.060) [-1533.268] (-1549.312) (-1553.343) * (-1557.898) (-1547.849) (-1556.590) [-1541.471] -- 0:12:47
159000 -- [-1535.716] (-1540.865) (-1554.836) (-1546.964) * (-1565.351) [-1546.901] (-1557.281) (-1556.342) -- 0:12:46
160000 -- (-1546.992) [-1537.967] (-1568.807) (-1548.093) * (-1557.432) [-1537.975] (-1564.203) (-1544.455) -- 0:12:46
Average standard deviation of split frequencies: 0.026508
161000 -- [-1536.018] (-1535.903) (-1560.079) (-1555.034) * (-1544.112) [-1538.034] (-1575.377) (-1545.055) -- 0:12:46
162000 -- [-1540.282] (-1540.073) (-1557.773) (-1550.442) * (-1548.568) (-1546.145) (-1564.093) [-1541.647] -- 0:12:45
163000 -- (-1542.014) [-1545.559] (-1545.956) (-1560.382) * (-1542.911) (-1557.794) (-1563.803) [-1537.296] -- 0:12:45
164000 -- (-1548.082) [-1541.684] (-1560.965) (-1551.147) * (-1552.545) (-1563.452) (-1557.052) [-1542.395] -- 0:12:39
165000 -- [-1545.203] (-1548.855) (-1566.581) (-1548.603) * (-1574.931) (-1554.349) (-1566.130) [-1541.624] -- 0:12:39
Average standard deviation of split frequencies: 0.026048
166000 -- [-1537.753] (-1543.779) (-1556.450) (-1559.967) * (-1577.805) [-1545.854] (-1558.839) (-1547.776) -- 0:12:38
167000 -- (-1541.812) [-1541.390] (-1546.003) (-1556.769) * (-1562.236) (-1542.816) [-1535.780] (-1562.940) -- 0:12:38
168000 -- (-1545.933) [-1534.567] (-1551.986) (-1548.597) * (-1555.676) (-1541.324) (-1545.387) [-1548.196] -- 0:12:37
169000 -- [-1543.690] (-1551.527) (-1545.625) (-1536.432) * (-1571.254) (-1537.671) [-1541.149] (-1549.315) -- 0:12:37
170000 -- [-1538.151] (-1561.781) (-1541.558) (-1546.173) * (-1577.181) [-1545.510] (-1546.206) (-1565.729) -- 0:12:36
Average standard deviation of split frequencies: 0.024669
171000 -- [-1544.302] (-1549.620) (-1546.340) (-1558.476) * (-1558.258) (-1542.911) [-1543.249] (-1558.393) -- 0:12:36
172000 -- (-1535.665) (-1546.873) [-1545.264] (-1568.871) * (-1557.523) (-1550.872) (-1555.960) [-1555.944] -- 0:12:35
173000 -- (-1547.542) [-1535.258] (-1550.497) (-1570.088) * [-1544.605] (-1550.232) (-1544.815) (-1558.277) -- 0:12:35
174000 -- [-1533.399] (-1543.734) (-1564.210) (-1553.042) * (-1548.671) [-1545.889] (-1543.188) (-1553.816) -- 0:12:34
175000 -- [-1540.262] (-1540.019) (-1562.694) (-1551.770) * (-1556.618) [-1550.744] (-1543.742) (-1542.198) -- 0:12:34
Average standard deviation of split frequencies: 0.021236
176000 -- [-1538.440] (-1547.752) (-1545.141) (-1559.124) * (-1551.464) (-1558.347) [-1528.877] (-1549.378) -- 0:12:33
177000 -- (-1551.976) [-1538.329] (-1555.831) (-1547.055) * (-1544.350) (-1580.136) [-1539.799] (-1552.197) -- 0:12:33
178000 -- (-1542.068) [-1539.423] (-1555.549) (-1561.249) * [-1543.105] (-1565.350) (-1539.879) (-1559.056) -- 0:12:32
179000 -- (-1556.790) (-1542.863) [-1538.260] (-1554.397) * (-1539.793) (-1562.876) [-1539.655] (-1557.155) -- 0:12:32
180000 -- (-1550.858) [-1545.619] (-1544.682) (-1546.875) * [-1545.705] (-1555.765) (-1582.768) (-1546.908) -- 0:12:27
Average standard deviation of split frequencies: 0.020222
181000 -- (-1539.583) (-1567.240) (-1549.886) [-1544.445] * [-1543.674] (-1546.372) (-1569.647) (-1555.966) -- 0:12:26
182000 -- [-1529.376] (-1544.447) (-1554.456) (-1546.241) * [-1551.972] (-1540.162) (-1551.517) (-1551.496) -- 0:12:26
183000 -- (-1532.792) [-1534.233] (-1554.664) (-1539.693) * (-1551.032) [-1541.447] (-1563.293) (-1558.065) -- 0:12:25
184000 -- (-1543.464) (-1549.253) (-1543.044) [-1546.782] * (-1559.712) (-1561.872) (-1566.290) [-1541.561] -- 0:12:25
185000 -- (-1544.356) [-1549.565] (-1536.007) (-1565.981) * (-1550.851) (-1556.337) [-1546.961] (-1549.576) -- 0:12:24
Average standard deviation of split frequencies: 0.017479
186000 -- (-1543.791) (-1557.571) [-1543.279] (-1555.877) * [-1542.829] (-1557.892) (-1554.668) (-1546.678) -- 0:12:23
187000 -- (-1544.579) (-1559.083) [-1538.031] (-1543.781) * (-1566.888) (-1555.800) [-1547.547] (-1547.608) -- 0:12:23
188000 -- [-1538.250] (-1553.085) (-1563.487) (-1543.503) * (-1556.029) [-1537.506] (-1538.995) (-1551.004) -- 0:12:22
189000 -- [-1532.917] (-1555.692) (-1554.240) (-1540.385) * (-1561.513) (-1558.662) [-1539.739] (-1543.212) -- 0:12:22
190000 -- (-1543.828) (-1569.732) (-1540.923) [-1546.698] * (-1553.167) (-1550.284) [-1538.094] (-1550.426) -- 0:12:21
Average standard deviation of split frequencies: 0.014920
191000 -- [-1539.170] (-1553.134) (-1533.522) (-1553.489) * (-1559.830) (-1557.318) [-1545.856] (-1549.336) -- 0:12:21
192000 -- (-1542.623) [-1542.969] (-1553.927) (-1555.867) * (-1564.520) (-1566.479) (-1558.628) [-1539.608] -- 0:12:20
193000 -- [-1551.137] (-1549.789) (-1544.210) (-1551.467) * (-1549.900) (-1555.649) (-1558.156) [-1541.412] -- 0:12:20
194000 -- (-1545.079) (-1554.664) [-1539.147] (-1549.030) * [-1546.812] (-1579.636) (-1555.797) (-1544.817) -- 0:12:19
195000 -- (-1556.273) (-1555.100) [-1530.385] (-1542.300) * (-1554.256) (-1550.377) [-1545.381] (-1558.487) -- 0:12:14
Average standard deviation of split frequencies: 0.018083
196000 -- (-1561.764) [-1544.830] (-1544.141) (-1553.154) * (-1561.601) (-1558.366) (-1562.594) [-1546.217] -- 0:12:14
197000 -- (-1548.833) (-1549.415) [-1543.905] (-1553.569) * (-1561.563) [-1540.442] (-1549.183) (-1549.236) -- 0:12:09
198000 -- (-1551.569) [-1538.526] (-1558.719) (-1556.715) * (-1550.074) [-1541.011] (-1551.310) (-1564.733) -- 0:12:09
199000 -- (-1544.486) [-1550.976] (-1547.247) (-1554.410) * (-1577.445) (-1550.202) (-1562.161) [-1546.319] -- 0:12:08
200000 -- (-1544.429) (-1556.010) (-1545.260) [-1542.947] * [-1551.339] (-1549.499) (-1538.782) (-1552.143) -- 0:12:04
Average standard deviation of split frequencies: 0.017575
201000 -- [-1540.347] (-1560.723) (-1561.984) (-1535.550) * (-1564.278) (-1540.831) [-1531.809] (-1548.503) -- 0:12:03
202000 -- (-1559.097) (-1558.789) [-1538.950] (-1543.123) * (-1536.972) [-1536.428] (-1549.513) (-1548.680) -- 0:11:58
203000 -- (-1559.748) (-1560.140) [-1556.993] (-1551.406) * (-1546.456) (-1549.768) (-1546.032) [-1547.980] -- 0:11:58
204000 -- (-1556.777) [-1544.033] (-1538.638) (-1563.263) * [-1541.784] (-1553.795) (-1560.455) (-1542.365) -- 0:11:57
205000 -- [-1548.800] (-1542.581) (-1545.729) (-1566.864) * [-1538.951] (-1546.339) (-1554.663) (-1548.222) -- 0:11:53
Average standard deviation of split frequencies: 0.018222
206000 -- [-1546.742] (-1537.559) (-1541.965) (-1580.473) * (-1551.244) [-1553.699] (-1560.207) (-1540.399) -- 0:11:53
207000 -- [-1538.015] (-1542.233) (-1542.762) (-1580.700) * (-1553.944) [-1552.574] (-1565.376) (-1548.349) -- 0:11:48
208000 -- [-1546.740] (-1553.485) (-1539.453) (-1549.798) * (-1560.213) (-1539.038) (-1553.112) [-1534.587] -- 0:11:48
209000 -- [-1539.982] (-1549.204) (-1557.207) (-1557.431) * (-1555.972) (-1545.563) [-1544.267] (-1543.062) -- 0:11:47
210000 -- (-1542.163) (-1562.257) [-1547.187] (-1564.638) * (-1553.764) (-1544.356) (-1558.174) [-1537.718] -- 0:11:43
Average standard deviation of split frequencies: 0.017979
211000 -- (-1540.478) (-1554.467) [-1542.443] (-1545.626) * (-1542.673) (-1552.850) (-1580.325) [-1535.295] -- 0:11:42
212000 -- [-1544.524] (-1536.822) (-1543.505) (-1558.119) * (-1551.762) (-1546.006) (-1570.707) [-1554.517] -- 0:11:38
213000 -- (-1555.098) (-1551.091) [-1537.656] (-1547.661) * (-1548.863) (-1562.001) (-1543.937) [-1543.004] -- 0:11:38
214000 -- (-1547.287) (-1546.475) [-1536.788] (-1554.755) * [-1556.364] (-1555.676) (-1540.034) (-1555.005) -- 0:11:37
215000 -- (-1545.922) [-1547.810] (-1561.057) (-1558.445) * (-1550.018) (-1557.543) (-1536.048) [-1542.817] -- 0:11:33
Average standard deviation of split frequencies: 0.017226
216000 -- [-1538.010] (-1545.311) (-1559.589) (-1545.230) * [-1546.103] (-1562.737) (-1547.159) (-1541.569) -- 0:11:33
217000 -- [-1540.611] (-1548.561) (-1551.002) (-1555.621) * (-1546.253) (-1567.980) (-1555.005) [-1544.881] -- 0:11:32
218000 -- [-1541.682] (-1556.303) (-1549.189) (-1557.500) * [-1540.506] (-1542.844) (-1556.033) (-1553.571) -- 0:11:28
219000 -- (-1557.418) (-1547.125) [-1545.488] (-1557.196) * (-1540.361) (-1558.686) [-1551.373] (-1549.892) -- 0:11:28
220000 -- [-1541.613] (-1552.830) (-1545.013) (-1565.866) * (-1542.114) (-1552.705) (-1557.542) [-1549.888] -- 0:11:24
Average standard deviation of split frequencies: 0.017501
221000 -- (-1546.740) [-1551.240] (-1554.323) (-1556.800) * [-1536.806] (-1549.242) (-1551.046) (-1546.823) -- 0:11:23
222000 -- (-1554.305) [-1547.304] (-1551.811) (-1549.794) * (-1551.284) (-1551.476) [-1544.299] (-1567.508) -- 0:11:23
223000 -- (-1547.594) (-1551.548) (-1556.049) [-1547.917] * [-1540.636] (-1541.576) (-1551.872) (-1566.139) -- 0:11:19
224000 -- [-1551.606] (-1552.220) (-1559.176) (-1550.463) * (-1548.943) [-1546.894] (-1553.458) (-1556.941) -- 0:11:19
225000 -- (-1543.394) (-1536.467) (-1547.374) [-1538.902] * (-1549.462) (-1547.690) [-1550.573] (-1557.825) -- 0:11:15
Average standard deviation of split frequencies: 0.016538
226000 -- (-1540.290) [-1541.254] (-1545.855) (-1544.699) * (-1547.173) (-1541.189) (-1559.013) [-1547.387] -- 0:11:14
227000 -- (-1544.748) [-1538.575] (-1556.278) (-1555.669) * [-1527.877] (-1556.415) (-1554.587) (-1557.050) -- 0:11:14
228000 -- (-1541.104) [-1535.175] (-1552.819) (-1548.392) * (-1557.081) (-1579.103) [-1545.252] (-1557.631) -- 0:11:10
229000 -- [-1543.502] (-1537.738) (-1565.850) (-1548.768) * [-1543.928] (-1557.299) (-1551.868) (-1552.264) -- 0:11:09
230000 -- (-1546.468) (-1550.611) [-1549.027] (-1552.907) * [-1539.094] (-1561.481) (-1547.638) (-1546.160) -- 0:11:06
Average standard deviation of split frequencies: 0.017921
231000 -- [-1544.475] (-1548.450) (-1552.555) (-1564.440) * [-1550.100] (-1552.902) (-1534.612) (-1555.471) -- 0:11:05
232000 -- (-1554.997) (-1545.426) [-1537.788] (-1545.312) * [-1541.741] (-1566.427) (-1547.510) (-1546.369) -- 0:11:05
233000 -- (-1551.157) (-1553.546) [-1535.776] (-1570.493) * (-1544.169) (-1557.711) [-1533.196] (-1552.322) -- 0:11:01
234000 -- (-1554.044) (-1548.897) [-1535.984] (-1572.630) * (-1543.057) (-1564.091) [-1541.407] (-1540.283) -- 0:11:01
235000 -- (-1552.307) (-1546.345) (-1542.076) [-1549.410] * (-1561.780) (-1568.940) [-1543.989] (-1542.796) -- 0:10:57
Average standard deviation of split frequencies: 0.016748
236000 -- (-1549.226) (-1545.733) (-1542.971) [-1549.217] * [-1545.127] (-1555.784) (-1545.637) (-1543.553) -- 0:10:57
237000 -- (-1550.053) [-1540.721] (-1538.488) (-1550.274) * [-1537.909] (-1552.477) (-1544.910) (-1557.786) -- 0:10:56
238000 -- [-1538.240] (-1542.938) (-1551.123) (-1544.029) * [-1544.515] (-1568.558) (-1539.605) (-1561.712) -- 0:10:53
239000 -- [-1535.899] (-1543.002) (-1549.742) (-1541.796) * [-1538.328] (-1561.984) (-1550.288) (-1545.531) -- 0:10:52
240000 -- [-1544.619] (-1546.155) (-1552.406) (-1560.612) * [-1535.621] (-1572.526) (-1545.908) (-1553.250) -- 0:10:49
Average standard deviation of split frequencies: 0.017080
241000 -- [-1538.942] (-1551.313) (-1553.587) (-1558.494) * [-1545.246] (-1564.245) (-1536.839) (-1551.729) -- 0:10:48
242000 -- (-1538.150) (-1562.012) [-1536.796] (-1571.085) * [-1537.970] (-1564.318) (-1540.676) (-1532.913) -- 0:10:48
243000 -- (-1541.745) (-1546.623) (-1550.550) [-1549.225] * (-1545.605) (-1550.749) [-1545.940] (-1548.887) -- 0:10:44
244000 -- (-1549.707) (-1540.468) (-1550.861) [-1541.260] * (-1540.614) (-1555.906) (-1557.192) [-1546.560] -- 0:10:44
245000 -- (-1547.432) [-1543.587] (-1557.445) (-1541.215) * (-1538.954) (-1558.679) (-1543.520) [-1548.809] -- 0:10:40
Average standard deviation of split frequencies: 0.015756
246000 -- [-1539.599] (-1560.885) (-1540.861) (-1545.887) * [-1538.964] (-1553.832) (-1547.244) (-1560.801) -- 0:10:40
247000 -- [-1543.693] (-1563.305) (-1551.759) (-1551.848) * (-1547.786) [-1560.670] (-1546.295) (-1554.478) -- 0:10:40
248000 -- (-1548.057) (-1565.498) (-1560.804) [-1543.870] * (-1539.452) [-1546.545] (-1558.280) (-1549.045) -- 0:10:36
249000 -- [-1543.724] (-1558.893) (-1539.088) (-1543.618) * [-1541.927] (-1557.027) (-1549.934) (-1562.476) -- 0:10:36
250000 -- [-1542.409] (-1557.502) (-1543.836) (-1544.872) * [-1548.139] (-1541.539) (-1537.207) (-1556.278) -- 0:10:33
Average standard deviation of split frequencies: 0.015334
251000 -- (-1541.016) [-1537.675] (-1555.881) (-1561.063) * (-1542.973) (-1549.352) [-1534.113] (-1560.714) -- 0:10:32
252000 -- (-1539.704) [-1535.321] (-1571.963) (-1552.428) * [-1559.044] (-1542.302) (-1536.091) (-1568.342) -- 0:10:32
253000 -- (-1534.551) (-1544.989) (-1574.877) [-1536.289] * (-1557.654) (-1558.159) [-1559.742] (-1557.226) -- 0:10:28
254000 -- (-1539.121) (-1553.243) (-1568.308) [-1535.918] * [-1541.336] (-1556.069) (-1541.975) (-1561.365) -- 0:10:28
255000 -- [-1541.937] (-1546.082) (-1567.747) (-1564.423) * (-1543.718) [-1541.344] (-1551.950) (-1581.757) -- 0:10:25
Average standard deviation of split frequencies: 0.016278
256000 -- (-1541.724) [-1539.878] (-1565.691) (-1561.071) * (-1560.328) (-1535.604) [-1543.465] (-1586.842) -- 0:10:24
257000 -- (-1542.609) (-1547.835) (-1562.794) [-1543.792] * (-1561.459) [-1543.463] (-1549.116) (-1584.278) -- 0:10:24
258000 -- [-1542.465] (-1548.717) (-1548.853) (-1549.031) * [-1543.101] (-1547.707) (-1542.940) (-1563.611) -- 0:10:21
259000 -- (-1548.896) [-1548.040] (-1570.504) (-1556.198) * (-1548.195) (-1552.131) [-1539.578] (-1544.369) -- 0:10:20
260000 -- [-1535.381] (-1548.737) (-1559.341) (-1565.182) * (-1557.199) (-1572.316) (-1540.206) [-1532.856] -- 0:10:17
Average standard deviation of split frequencies: 0.016710
261000 -- (-1554.391) (-1542.540) [-1544.294] (-1537.974) * (-1561.435) (-1544.831) [-1529.495] (-1533.726) -- 0:10:17
262000 -- (-1551.941) [-1537.800] (-1553.264) (-1548.729) * (-1546.284) (-1545.934) [-1538.030] (-1548.419) -- 0:10:14
263000 -- [-1544.611] (-1547.723) (-1549.689) (-1544.919) * [-1535.464] (-1552.952) (-1540.233) (-1557.778) -- 0:10:13
264000 -- (-1548.543) [-1537.267] (-1549.966) (-1545.273) * (-1538.206) (-1563.532) (-1545.579) [-1542.731] -- 0:10:13
265000 -- (-1547.245) (-1533.659) [-1536.457] (-1565.276) * [-1549.291] (-1551.689) (-1540.286) (-1542.778) -- 0:10:10
Average standard deviation of split frequencies: 0.016871
266000 -- (-1551.852) (-1538.291) [-1548.844] (-1545.977) * (-1554.124) (-1558.489) [-1550.891] (-1559.827) -- 0:10:09
267000 -- [-1544.498] (-1561.221) (-1542.323) (-1561.678) * (-1552.421) (-1545.827) [-1552.767] (-1564.770) -- 0:10:06
268000 -- (-1541.014) (-1550.251) [-1536.461] (-1575.538) * (-1551.015) (-1559.277) [-1541.500] (-1559.637) -- 0:10:06
269000 -- [-1544.297] (-1537.336) (-1549.988) (-1577.792) * (-1550.950) [-1543.020] (-1546.239) (-1551.864) -- 0:10:05
270000 -- (-1556.525) (-1544.370) (-1553.288) [-1553.742] * (-1542.339) [-1548.644] (-1544.193) (-1553.733) -- 0:10:02
Average standard deviation of split frequencies: 0.016881
271000 -- (-1546.453) (-1543.068) (-1549.057) [-1565.433] * (-1546.299) (-1560.488) [-1536.179] (-1560.690) -- 0:10:02
272000 -- (-1537.150) [-1541.584] (-1554.198) (-1573.518) * (-1541.849) [-1562.837] (-1549.706) (-1559.624) -- 0:09:59
273000 -- (-1547.638) [-1540.742] (-1555.595) (-1550.520) * (-1535.585) (-1561.785) (-1544.749) [-1548.074] -- 0:09:59
274000 -- [-1551.569] (-1537.922) (-1548.590) (-1538.556) * (-1543.675) [-1548.161] (-1540.090) (-1561.646) -- 0:09:58
275000 -- (-1568.007) (-1552.730) (-1555.795) [-1536.182] * (-1535.669) [-1543.558] (-1554.757) (-1579.484) -- 0:09:55
Average standard deviation of split frequencies: 0.018535
276000 -- (-1565.660) [-1555.247] (-1550.001) (-1542.573) * (-1548.775) (-1543.775) [-1541.456] (-1578.967) -- 0:09:55
277000 -- (-1578.696) [-1559.720] (-1548.470) (-1563.408) * (-1541.742) [-1549.463] (-1537.392) (-1556.811) -- 0:09:52
278000 -- (-1572.405) (-1550.119) (-1543.821) [-1541.844] * (-1550.063) (-1545.085) [-1540.279] (-1556.264) -- 0:09:52
279000 -- (-1569.219) [-1539.878] (-1549.132) (-1545.326) * (-1552.505) (-1556.082) [-1545.062] (-1567.604) -- 0:09:51
280000 -- (-1562.201) [-1530.911] (-1550.912) (-1543.898) * (-1549.627) [-1545.612] (-1550.447) (-1547.639) -- 0:09:48
Average standard deviation of split frequencies: 0.021461
281000 -- (-1562.246) [-1546.553] (-1582.051) (-1549.090) * (-1557.593) (-1544.908) (-1544.996) [-1549.050] -- 0:09:48
282000 -- (-1560.224) (-1541.632) (-1554.177) [-1536.988] * (-1566.051) (-1549.641) (-1540.990) [-1540.597] -- 0:09:45
283000 -- (-1565.099) (-1553.202) (-1551.280) [-1545.442] * (-1542.607) [-1546.974] (-1559.812) (-1556.534) -- 0:09:45
284000 -- (-1549.062) [-1540.759] (-1557.618) (-1549.499) * (-1546.981) (-1545.674) (-1551.720) [-1553.432] -- 0:09:44
285000 -- (-1551.517) [-1537.355] (-1569.229) (-1548.032) * (-1539.219) [-1553.058] (-1563.438) (-1577.398) -- 0:09:42
Average standard deviation of split frequencies: 0.022134
286000 -- (-1545.853) [-1532.540] (-1563.706) (-1544.894) * (-1539.820) (-1550.521) (-1547.974) [-1551.059] -- 0:09:41
287000 -- (-1548.153) (-1538.054) (-1549.045) [-1538.637] * [-1539.065] (-1566.118) (-1555.960) (-1546.582) -- 0:09:38
288000 -- [-1541.737] (-1542.820) (-1536.706) (-1547.577) * (-1541.770) [-1543.630] (-1552.626) (-1559.069) -- 0:09:38
289000 -- (-1542.207) (-1559.646) (-1548.230) [-1541.704] * (-1549.967) (-1548.488) (-1548.810) [-1543.113] -- 0:09:38
290000 -- (-1547.824) (-1557.547) [-1537.966] (-1550.332) * (-1537.142) (-1556.284) (-1549.633) [-1540.040] -- 0:09:35
Average standard deviation of split frequencies: 0.022946
291000 -- (-1553.581) [-1535.304] (-1554.701) (-1544.247) * (-1540.122) (-1544.732) (-1544.017) [-1544.077] -- 0:09:34
292000 -- (-1566.573) [-1545.885] (-1554.404) (-1540.603) * (-1538.359) (-1552.191) [-1554.784] (-1559.632) -- 0:09:32
293000 -- (-1561.070) (-1546.029) (-1560.235) [-1536.489] * (-1537.979) (-1546.899) (-1559.176) [-1549.768] -- 0:09:31
294000 -- (-1563.433) [-1537.936] (-1547.400) (-1546.876) * [-1539.446] (-1558.157) (-1572.739) (-1538.970) -- 0:09:31
295000 -- (-1575.480) (-1545.430) (-1557.789) [-1541.824] * [-1539.214] (-1567.429) (-1548.570) (-1542.428) -- 0:09:28
Average standard deviation of split frequencies: 0.023358
296000 -- [-1549.046] (-1553.209) (-1550.266) (-1543.512) * (-1539.488) (-1542.753) (-1565.873) [-1545.982] -- 0:09:28
297000 -- [-1547.284] (-1551.377) (-1539.267) (-1545.284) * [-1538.864] (-1547.426) (-1555.254) (-1543.710) -- 0:09:25
298000 -- (-1552.097) [-1544.008] (-1545.221) (-1546.333) * (-1538.795) (-1560.159) (-1553.812) [-1533.606] -- 0:09:25
299000 -- (-1551.090) (-1548.150) (-1560.951) [-1544.035] * (-1556.957) [-1535.322] (-1564.766) (-1536.031) -- 0:09:25
300000 -- (-1567.939) (-1543.162) (-1550.559) [-1541.020] * (-1552.148) (-1572.961) (-1550.079) [-1536.769] -- 0:09:22
Average standard deviation of split frequencies: 0.022995
301000 -- (-1558.557) (-1548.066) (-1543.682) [-1545.270] * (-1542.148) (-1571.799) (-1553.594) [-1545.878] -- 0:09:21
302000 -- (-1570.699) (-1548.980) (-1548.007) [-1554.373] * [-1541.442] (-1564.331) (-1543.019) (-1553.095) -- 0:09:19
303000 -- (-1548.460) [-1542.882] (-1566.036) (-1558.900) * (-1542.358) (-1555.545) (-1551.315) [-1532.236] -- 0:09:18
304000 -- [-1542.665] (-1541.381) (-1559.948) (-1546.856) * [-1536.377] (-1564.625) (-1543.481) (-1541.346) -- 0:09:18
305000 -- (-1530.468) (-1548.270) [-1545.662] (-1556.996) * (-1549.413) (-1564.522) (-1554.057) [-1542.567] -- 0:09:16
Average standard deviation of split frequencies: 0.021196
306000 -- [-1543.249] (-1541.630) (-1555.889) (-1550.821) * (-1548.552) (-1570.687) (-1556.622) [-1544.511] -- 0:09:15
307000 -- (-1546.093) (-1538.713) [-1534.986] (-1560.255) * (-1550.306) (-1564.816) (-1548.350) [-1538.537] -- 0:09:13
308000 -- (-1547.125) [-1542.799] (-1550.011) (-1561.981) * [-1532.961] (-1543.238) (-1547.520) (-1547.151) -- 0:09:12
309000 -- (-1543.033) [-1536.050] (-1545.259) (-1569.624) * (-1537.898) (-1538.706) (-1560.134) [-1535.385] -- 0:09:12
310000 -- [-1536.542] (-1546.399) (-1550.946) (-1546.091) * [-1545.935] (-1561.697) (-1553.599) (-1543.318) -- 0:09:09
Average standard deviation of split frequencies: 0.021767
311000 -- (-1540.569) [-1533.925] (-1546.712) (-1558.823) * (-1558.036) (-1562.929) (-1559.876) [-1541.506] -- 0:09:09
312000 -- (-1533.509) [-1539.341] (-1557.443) (-1559.663) * (-1559.264) (-1543.690) (-1553.872) [-1535.616] -- 0:09:06
313000 -- [-1537.771] (-1544.754) (-1540.542) (-1550.380) * (-1562.047) (-1550.338) [-1553.326] (-1537.857) -- 0:09:06
314000 -- [-1533.650] (-1546.401) (-1533.196) (-1558.547) * (-1564.561) [-1547.989] (-1551.614) (-1547.521) -- 0:09:06
315000 -- (-1540.826) (-1558.728) [-1540.233] (-1559.310) * [-1547.645] (-1539.416) (-1553.238) (-1551.135) -- 0:09:03
Average standard deviation of split frequencies: 0.023016
316000 -- (-1543.314) [-1528.076] (-1543.221) (-1561.104) * (-1567.538) [-1544.865] (-1539.673) (-1552.485) -- 0:09:03
317000 -- [-1542.610] (-1531.826) (-1556.232) (-1568.921) * (-1545.597) (-1569.891) (-1539.735) [-1549.677] -- 0:09:00
318000 -- (-1547.058) (-1536.351) [-1536.442] (-1589.528) * (-1542.480) (-1565.490) (-1552.404) [-1551.884] -- 0:09:00
319000 -- (-1547.209) [-1545.010] (-1552.941) (-1568.873) * (-1552.246) (-1573.425) [-1556.222] (-1549.611) -- 0:09:00
320000 -- (-1548.668) (-1552.619) [-1545.619] (-1561.860) * (-1548.814) (-1570.028) (-1561.793) [-1546.449] -- 0:08:57
Average standard deviation of split frequencies: 0.025161
321000 -- (-1556.811) (-1550.432) (-1542.261) [-1550.942] * [-1549.046] (-1569.076) (-1555.945) (-1552.680) -- 0:08:57
322000 -- (-1551.735) (-1553.275) [-1545.760] (-1558.153) * (-1558.640) (-1574.892) (-1546.534) [-1532.621] -- 0:08:54
323000 -- (-1556.657) [-1545.477] (-1557.735) (-1563.285) * (-1551.294) (-1559.508) [-1545.903] (-1550.643) -- 0:08:54
324000 -- (-1560.016) (-1536.658) [-1550.338] (-1564.218) * (-1549.265) (-1554.982) (-1566.438) [-1541.431] -- 0:08:54
325000 -- (-1545.129) (-1550.275) (-1541.300) [-1531.544] * (-1547.761) [-1537.535] (-1557.899) (-1546.052) -- 0:08:51
Average standard deviation of split frequencies: 0.023886
326000 -- (-1561.576) (-1539.490) (-1538.021) [-1539.088] * [-1546.920] (-1541.017) (-1550.547) (-1551.575) -- 0:08:51
327000 -- (-1552.877) [-1544.760] (-1547.645) (-1542.904) * [-1543.990] (-1548.349) (-1556.043) (-1545.620) -- 0:08:48
328000 -- (-1549.173) (-1539.709) (-1567.462) [-1542.497] * (-1559.617) [-1540.045] (-1554.360) (-1537.991) -- 0:08:48
329000 -- (-1551.764) (-1532.120) (-1572.242) [-1540.066] * (-1557.460) (-1553.403) (-1553.764) [-1531.545] -- 0:08:48
330000 -- (-1550.247) (-1546.192) (-1550.300) [-1533.027] * (-1544.571) (-1545.881) (-1552.044) [-1539.461] -- 0:08:45
Average standard deviation of split frequencies: 0.022069
331000 -- (-1557.614) [-1537.154] (-1558.294) (-1535.695) * (-1554.697) (-1536.225) [-1550.493] (-1554.787) -- 0:08:45
332000 -- (-1562.106) (-1548.212) (-1546.222) [-1545.084] * (-1543.884) [-1546.412] (-1547.410) (-1541.215) -- 0:08:45
333000 -- (-1566.671) [-1539.279] (-1534.734) (-1552.304) * [-1547.195] (-1554.405) (-1554.507) (-1553.104) -- 0:08:42
334000 -- (-1568.991) (-1546.859) [-1543.615] (-1546.816) * [-1547.344] (-1547.716) (-1553.765) (-1550.099) -- 0:08:42
335000 -- (-1563.057) (-1541.405) [-1537.248] (-1537.319) * [-1541.268] (-1549.974) (-1560.435) (-1554.725) -- 0:08:40
Average standard deviation of split frequencies: 0.023121
336000 -- (-1551.025) [-1535.740] (-1537.585) (-1548.032) * (-1555.801) [-1529.495] (-1543.345) (-1548.203) -- 0:08:39
337000 -- (-1558.984) (-1546.609) [-1535.435] (-1547.311) * [-1543.924] (-1533.902) (-1543.966) (-1548.701) -- 0:08:39
338000 -- (-1551.676) (-1561.255) [-1541.298] (-1541.085) * (-1547.291) [-1534.179] (-1553.225) (-1541.713) -- 0:08:37
339000 -- (-1545.043) (-1555.963) [-1538.778] (-1559.689) * [-1549.809] (-1548.820) (-1545.827) (-1554.727) -- 0:08:36
340000 -- (-1546.762) (-1568.750) [-1542.610] (-1558.614) * (-1560.902) (-1541.759) [-1543.433] (-1551.803) -- 0:08:34
Average standard deviation of split frequencies: 0.020597
341000 -- [-1542.644] (-1558.932) (-1545.363) (-1568.410) * (-1544.876) [-1543.669] (-1541.593) (-1549.111) -- 0:08:34
342000 -- (-1554.796) (-1567.949) [-1544.031] (-1555.065) * (-1544.188) (-1555.191) (-1561.560) [-1541.149] -- 0:08:33
343000 -- (-1536.888) (-1559.218) (-1534.071) [-1555.737] * (-1547.148) (-1547.939) [-1556.598] (-1552.258) -- 0:08:31
344000 -- (-1557.784) (-1543.041) [-1534.569] (-1536.846) * (-1545.880) (-1546.702) [-1552.855] (-1561.108) -- 0:08:31
345000 -- (-1577.581) (-1545.757) [-1536.222] (-1535.347) * (-1565.837) (-1554.331) [-1540.638] (-1543.396) -- 0:08:28
Average standard deviation of split frequencies: 0.020437
346000 -- (-1560.220) (-1546.801) (-1545.840) [-1541.126] * (-1549.201) (-1542.512) [-1547.033] (-1557.943) -- 0:08:28
347000 -- (-1547.662) (-1556.612) (-1550.693) [-1553.632] * (-1558.972) (-1540.839) [-1538.572] (-1558.660) -- 0:08:28
348000 -- (-1559.334) (-1552.002) [-1550.200] (-1554.601) * (-1569.093) (-1543.958) [-1548.368] (-1552.015) -- 0:08:25
349000 -- [-1534.486] (-1550.942) (-1568.400) (-1552.299) * (-1559.765) (-1543.011) [-1545.342] (-1563.653) -- 0:08:25
350000 -- (-1541.739) [-1551.622] (-1569.799) (-1543.907) * (-1566.436) [-1536.746] (-1550.494) (-1548.359) -- 0:08:23
Average standard deviation of split frequencies: 0.022154
351000 -- (-1548.207) (-1570.077) (-1567.219) [-1544.294] * (-1568.628) (-1540.437) [-1543.133] (-1540.530) -- 0:08:22
352000 -- [-1537.306] (-1564.709) (-1544.514) (-1550.879) * (-1573.220) (-1543.547) [-1543.976] (-1563.644) -- 0:08:22
353000 -- [-1538.628] (-1564.022) (-1559.384) (-1549.885) * (-1560.060) (-1550.392) [-1557.580] (-1549.979) -- 0:08:20
354000 -- (-1554.837) (-1569.034) [-1554.016] (-1553.985) * (-1571.380) (-1540.509) (-1557.645) [-1545.025] -- 0:08:20
355000 -- [-1545.436] (-1552.227) (-1541.911) (-1567.518) * (-1556.357) (-1545.971) [-1557.930] (-1537.930) -- 0:08:17
Average standard deviation of split frequencies: 0.023394
356000 -- (-1547.280) [-1531.906] (-1555.705) (-1548.600) * (-1565.207) (-1546.382) [-1549.190] (-1540.974) -- 0:08:17
357000 -- (-1536.672) [-1538.196] (-1547.157) (-1557.244) * (-1557.605) (-1551.395) (-1546.053) [-1536.028] -- 0:08:17
358000 -- (-1555.241) [-1539.706] (-1551.373) (-1559.372) * (-1558.082) (-1549.443) (-1549.316) [-1535.940] -- 0:08:14
359000 -- (-1552.662) [-1536.320] (-1562.232) (-1549.182) * (-1547.139) [-1545.375] (-1561.713) (-1540.076) -- 0:08:14
360000 -- [-1550.452] (-1544.294) (-1541.918) (-1563.815) * (-1558.422) (-1565.047) (-1543.796) [-1544.622] -- 0:08:12
Average standard deviation of split frequencies: 0.021854
361000 -- [-1546.455] (-1539.711) (-1548.403) (-1554.518) * (-1555.391) (-1568.876) [-1545.092] (-1550.026) -- 0:08:12
362000 -- (-1549.008) (-1543.683) (-1552.384) [-1540.286] * (-1563.882) [-1543.242] (-1549.581) (-1552.896) -- 0:08:11
363000 -- (-1550.881) (-1540.610) (-1552.182) [-1537.060] * (-1555.638) (-1560.240) (-1545.605) [-1547.462] -- 0:08:09
364000 -- (-1536.351) (-1554.657) (-1567.721) [-1539.965] * [-1545.731] (-1551.382) (-1549.926) (-1550.417) -- 0:08:09
365000 -- (-1540.029) [-1538.101] (-1552.075) (-1544.476) * (-1558.934) (-1551.003) (-1549.468) [-1542.063] -- 0:08:07
Average standard deviation of split frequencies: 0.022308
366000 -- [-1546.499] (-1543.585) (-1566.496) (-1542.531) * [-1541.379] (-1571.256) (-1552.849) (-1544.200) -- 0:08:06
367000 -- [-1532.270] (-1551.210) (-1564.377) (-1558.011) * (-1547.687) (-1553.626) (-1545.478) [-1540.955] -- 0:08:06
368000 -- [-1540.376] (-1542.384) (-1569.938) (-1560.914) * [-1543.350] (-1542.609) (-1552.487) (-1547.381) -- 0:08:04
369000 -- [-1539.538] (-1550.408) (-1557.952) (-1560.266) * (-1555.673) (-1537.877) [-1550.981] (-1550.106) -- 0:08:03
370000 -- [-1540.450] (-1551.966) (-1551.251) (-1547.271) * [-1546.015] (-1549.750) (-1563.374) (-1551.622) -- 0:08:01
Average standard deviation of split frequencies: 0.022990
371000 -- [-1548.626] (-1560.304) (-1548.087) (-1540.091) * [-1541.892] (-1548.426) (-1567.630) (-1551.687) -- 0:08:01
372000 -- [-1546.290] (-1549.326) (-1548.055) (-1542.562) * (-1548.217) [-1540.484] (-1553.333) (-1550.768) -- 0:08:01
373000 -- (-1535.678) (-1550.036) (-1554.963) [-1534.999] * (-1554.709) (-1551.705) (-1548.386) [-1546.203] -- 0:07:59
374000 -- [-1539.263] (-1561.281) (-1557.495) (-1539.293) * (-1556.156) (-1563.219) [-1541.502] (-1541.398) -- 0:07:58
375000 -- (-1541.866) (-1556.425) [-1537.421] (-1542.721) * (-1546.036) (-1562.215) [-1535.825] (-1539.850) -- 0:07:56
Average standard deviation of split frequencies: 0.024882
376000 -- (-1537.430) (-1547.980) [-1540.613] (-1557.296) * (-1538.696) (-1550.738) [-1548.165] (-1543.952) -- 0:07:56
377000 -- (-1563.268) (-1560.657) (-1549.863) [-1543.383] * [-1535.581] (-1564.191) (-1556.058) (-1535.257) -- 0:07:55
378000 -- (-1539.025) (-1547.203) [-1547.381] (-1544.840) * [-1536.397] (-1548.787) (-1551.807) (-1531.788) -- 0:07:53
379000 -- (-1541.834) (-1558.163) [-1553.782] (-1538.412) * (-1547.868) (-1549.048) (-1561.013) [-1537.268] -- 0:07:53
380000 -- [-1533.137] (-1571.956) (-1545.905) (-1549.011) * (-1548.272) [-1538.535] (-1564.475) (-1550.321) -- 0:07:51
Average standard deviation of split frequencies: 0.025529
381000 -- [-1547.800] (-1579.044) (-1548.072) (-1548.022) * [-1545.285] (-1543.141) (-1560.608) (-1546.017) -- 0:07:51
382000 -- (-1552.559) (-1557.004) [-1531.722] (-1555.734) * [-1538.949] (-1559.948) (-1550.857) (-1547.520) -- 0:07:50
383000 -- (-1547.441) (-1559.048) [-1545.063] (-1548.494) * (-1541.391) (-1572.196) (-1553.222) [-1543.499] -- 0:07:48
384000 -- (-1571.409) (-1549.367) [-1541.772] (-1546.106) * [-1547.528] (-1551.639) (-1553.993) (-1541.982) -- 0:07:48
385000 -- (-1569.729) (-1545.454) [-1533.408] (-1551.211) * (-1550.011) (-1559.774) (-1560.119) [-1545.310] -- 0:07:48
Average standard deviation of split frequencies: 0.024063
386000 -- (-1581.222) (-1546.045) [-1547.049] (-1553.086) * [-1548.678] (-1557.990) (-1561.862) (-1547.022) -- 0:07:46
387000 -- [-1542.810] (-1539.708) (-1549.842) (-1540.685) * (-1550.797) [-1542.664] (-1549.786) (-1554.484) -- 0:07:45
388000 -- [-1539.987] (-1551.994) (-1544.624) (-1543.601) * (-1555.857) (-1546.042) [-1553.050] (-1553.479) -- 0:07:43
389000 -- (-1535.695) (-1572.153) (-1553.629) [-1539.268] * (-1546.102) (-1566.785) [-1547.693] (-1551.857) -- 0:07:43
390000 -- (-1560.377) (-1568.093) (-1552.279) [-1530.718] * [-1538.459] (-1558.272) (-1555.543) (-1547.522) -- 0:07:42
Average standard deviation of split frequencies: 0.023358
391000 -- (-1533.762) (-1550.378) (-1564.115) [-1539.248] * [-1535.697] (-1555.887) (-1559.794) (-1546.988) -- 0:07:41
392000 -- (-1546.902) (-1545.251) (-1560.734) [-1538.662] * [-1538.932] (-1567.610) (-1552.326) (-1547.586) -- 0:07:40
393000 -- [-1548.978] (-1548.388) (-1557.891) (-1537.720) * (-1539.020) (-1545.879) (-1561.887) [-1548.162] -- 0:07:38
394000 -- (-1552.536) (-1546.478) (-1579.387) [-1537.774] * [-1546.771] (-1553.388) (-1560.135) (-1537.588) -- 0:07:38
395000 -- [-1543.155] (-1542.510) (-1565.958) (-1541.618) * (-1562.885) (-1552.503) (-1563.600) [-1554.357] -- 0:07:37
Average standard deviation of split frequencies: 0.022397
396000 -- (-1548.177) (-1566.338) [-1550.277] (-1544.729) * [-1547.342] (-1558.470) (-1548.042) (-1556.606) -- 0:07:36
397000 -- (-1544.687) (-1572.313) [-1542.988] (-1545.373) * (-1550.228) [-1550.774] (-1552.089) (-1565.783) -- 0:07:35
398000 -- (-1548.039) (-1586.782) [-1542.536] (-1546.339) * [-1552.831] (-1548.334) (-1570.110) (-1562.077) -- 0:07:33
399000 -- (-1549.360) (-1565.901) [-1540.418] (-1532.604) * [-1542.175] (-1559.558) (-1575.234) (-1551.923) -- 0:07:33
400000 -- (-1541.919) (-1552.426) (-1546.197) [-1538.962] * (-1565.928) (-1534.336) [-1545.000] (-1560.632) -- 0:07:33
Average standard deviation of split frequencies: 0.022716
401000 -- (-1549.298) [-1551.482] (-1540.119) (-1545.490) * (-1552.070) (-1543.915) [-1548.821] (-1563.261) -- 0:07:31
402000 -- (-1554.005) (-1556.039) [-1537.377] (-1535.107) * (-1567.582) (-1554.120) (-1540.471) [-1557.610] -- 0:07:30
403000 -- (-1536.283) (-1553.077) [-1534.621] (-1555.509) * (-1550.705) [-1543.475] (-1569.690) (-1534.271) -- 0:07:28
404000 -- [-1546.039] (-1551.242) (-1545.497) (-1547.078) * (-1535.511) (-1557.815) (-1575.287) [-1543.597] -- 0:07:28
405000 -- (-1555.025) (-1536.112) [-1539.167] (-1553.116) * (-1539.068) (-1553.592) (-1550.279) [-1546.627] -- 0:07:28
Average standard deviation of split frequencies: 0.022405
406000 -- (-1556.184) [-1532.747] (-1549.930) (-1554.656) * (-1551.908) (-1569.852) (-1539.703) [-1542.918] -- 0:07:26
407000 -- [-1538.926] (-1548.255) (-1547.042) (-1547.213) * [-1544.258] (-1563.968) (-1544.628) (-1558.173) -- 0:07:25
408000 -- (-1547.862) (-1540.076) [-1538.416] (-1551.334) * (-1549.186) (-1553.888) [-1542.419] (-1545.043) -- 0:07:24
409000 -- (-1551.524) [-1541.233] (-1549.163) (-1550.853) * (-1563.012) (-1554.465) [-1536.788] (-1550.391) -- 0:07:23
410000 -- (-1566.527) (-1542.859) [-1544.246] (-1537.656) * [-1539.851] (-1562.881) (-1540.458) (-1539.351) -- 0:07:23
Average standard deviation of split frequencies: 0.022252
411000 -- (-1571.406) (-1549.360) (-1552.560) [-1554.843] * (-1555.253) (-1559.668) (-1533.019) [-1529.837] -- 0:07:21
412000 -- (-1556.266) [-1536.549] (-1562.554) (-1557.495) * (-1539.930) (-1559.892) [-1533.895] (-1538.556) -- 0:07:21
413000 -- (-1545.613) (-1554.009) (-1550.605) [-1546.900] * (-1547.321) (-1566.994) [-1536.348] (-1539.384) -- 0:07:19
414000 -- (-1542.337) [-1540.125] (-1547.206) (-1547.023) * (-1558.386) [-1543.186] (-1565.896) (-1535.156) -- 0:07:18
415000 -- (-1543.616) [-1539.133] (-1556.540) (-1548.745) * (-1565.126) (-1559.007) (-1546.998) [-1534.413] -- 0:07:18
Average standard deviation of split frequencies: 0.020579
416000 -- (-1555.220) (-1550.237) (-1559.057) [-1553.757] * (-1565.812) [-1543.691] (-1542.364) (-1550.711) -- 0:07:16
417000 -- [-1546.882] (-1544.923) (-1552.639) (-1551.507) * (-1550.622) (-1545.285) [-1528.127] (-1556.531) -- 0:07:16
418000 -- (-1548.357) (-1549.431) (-1568.281) [-1542.703] * (-1548.115) (-1557.274) (-1541.824) [-1546.215] -- 0:07:14
419000 -- (-1537.395) (-1545.754) (-1556.382) [-1537.050] * (-1564.147) (-1554.882) (-1550.037) [-1546.055] -- 0:07:14
420000 -- [-1546.120] (-1545.907) (-1568.804) (-1543.678) * (-1551.696) (-1561.897) (-1544.653) [-1550.517] -- 0:07:13
Average standard deviation of split frequencies: 0.020485
421000 -- [-1543.501] (-1544.167) (-1548.343) (-1544.644) * (-1553.558) (-1534.909) [-1542.867] (-1542.920) -- 0:07:11
422000 -- [-1545.163] (-1543.646) (-1539.583) (-1544.664) * (-1556.545) (-1544.006) (-1541.079) [-1550.606] -- 0:07:11
423000 -- (-1543.461) (-1551.822) [-1547.738] (-1556.251) * (-1552.156) (-1542.035) (-1566.399) [-1542.301] -- 0:07:09
424000 -- (-1556.564) (-1541.285) (-1546.176) [-1549.758] * [-1548.623] (-1537.623) (-1545.629) (-1549.292) -- 0:07:09
425000 -- (-1553.207) [-1553.465] (-1562.693) (-1548.859) * [-1545.904] (-1556.881) (-1546.796) (-1548.953) -- 0:07:08
Average standard deviation of split frequencies: 0.021271
426000 -- (-1554.831) [-1544.690] (-1566.710) (-1555.258) * (-1548.705) (-1555.459) (-1554.321) [-1540.757] -- 0:07:07
427000 -- (-1567.488) [-1535.097] (-1550.508) (-1558.088) * (-1556.822) (-1554.631) [-1543.529] (-1549.119) -- 0:07:06
428000 -- [-1541.035] (-1537.484) (-1535.285) (-1566.756) * [-1540.630] (-1538.537) (-1544.164) (-1573.730) -- 0:07:04
429000 -- (-1549.892) (-1544.768) [-1544.934] (-1567.336) * (-1565.795) [-1550.251] (-1543.773) (-1569.028) -- 0:07:04
430000 -- [-1541.398] (-1542.704) (-1552.086) (-1551.273) * (-1554.455) (-1549.079) [-1542.879] (-1557.489) -- 0:07:04
Average standard deviation of split frequencies: 0.022540
431000 -- (-1540.912) [-1543.454] (-1557.588) (-1553.359) * (-1547.960) (-1550.736) [-1535.456] (-1545.882) -- 0:07:02
432000 -- (-1545.882) [-1532.384] (-1563.072) (-1566.896) * (-1553.277) (-1534.538) (-1557.167) [-1534.553] -- 0:07:02
433000 -- (-1538.300) [-1543.625] (-1555.160) (-1582.282) * (-1558.790) (-1540.223) (-1541.752) [-1546.800] -- 0:07:00
434000 -- (-1548.999) [-1533.977] (-1549.454) (-1569.006) * (-1535.101) (-1543.207) (-1539.217) [-1542.553] -- 0:06:59
435000 -- [-1539.872] (-1541.385) (-1553.555) (-1549.939) * [-1537.547] (-1545.754) (-1545.767) (-1556.563) -- 0:06:59
Average standard deviation of split frequencies: 0.023870
436000 -- (-1538.524) [-1533.487] (-1565.747) (-1551.212) * (-1541.965) (-1563.855) [-1542.570] (-1558.930) -- 0:06:57
437000 -- (-1542.438) [-1540.818] (-1557.768) (-1558.695) * (-1531.208) (-1583.878) [-1542.518] (-1558.384) -- 0:06:57
438000 -- [-1536.897] (-1543.743) (-1538.029) (-1559.604) * [-1545.130] (-1552.289) (-1549.704) (-1559.335) -- 0:06:55
439000 -- (-1549.809) [-1540.909] (-1551.414) (-1557.055) * (-1539.259) (-1562.937) (-1548.152) [-1546.286] -- 0:06:55
440000 -- (-1545.733) [-1538.222] (-1561.261) (-1562.945) * (-1564.509) (-1557.576) (-1556.477) [-1552.153] -- 0:06:54
Average standard deviation of split frequencies: 0.023416
441000 -- (-1541.880) [-1540.203] (-1553.980) (-1584.443) * (-1557.411) (-1547.872) [-1543.689] (-1547.421) -- 0:06:53
442000 -- (-1545.645) [-1535.265] (-1585.524) (-1555.599) * (-1549.974) (-1553.503) (-1549.212) [-1542.386] -- 0:06:52
443000 -- [-1542.212] (-1550.081) (-1566.228) (-1568.584) * (-1551.694) (-1538.696) [-1550.445] (-1554.942) -- 0:06:51
444000 -- [-1538.543] (-1544.774) (-1552.146) (-1571.920) * [-1534.156] (-1546.361) (-1539.864) (-1564.772) -- 0:06:50
445000 -- [-1534.800] (-1540.749) (-1543.534) (-1569.591) * (-1544.610) [-1535.384] (-1549.826) (-1553.938) -- 0:06:50
Average standard deviation of split frequencies: 0.023919
446000 -- (-1543.095) (-1560.522) [-1538.536] (-1561.818) * (-1558.581) (-1537.220) (-1551.387) [-1543.300] -- 0:06:48
447000 -- [-1547.037] (-1547.469) (-1547.357) (-1571.355) * (-1569.721) (-1573.309) (-1555.868) [-1550.342] -- 0:06:48
448000 -- (-1554.389) (-1538.909) [-1562.951] (-1558.868) * (-1560.819) (-1549.452) (-1556.637) [-1541.493] -- 0:06:46
449000 -- (-1549.340) (-1540.880) [-1544.561] (-1555.632) * (-1548.396) [-1546.931] (-1572.465) (-1544.270) -- 0:06:46
450000 -- (-1552.138) (-1545.728) [-1542.442] (-1556.445) * (-1566.334) [-1541.157] (-1547.059) (-1540.646) -- 0:06:44
Average standard deviation of split frequencies: 0.025414
451000 -- (-1554.707) (-1552.956) [-1542.000] (-1554.800) * [-1542.649] (-1542.411) (-1561.392) (-1542.620) -- 0:06:44
452000 -- (-1545.244) (-1549.675) [-1543.490] (-1554.199) * (-1541.196) [-1542.143] (-1547.237) (-1571.372) -- 0:06:43
453000 -- (-1552.308) (-1556.102) [-1537.249] (-1571.591) * (-1555.675) [-1538.884] (-1534.488) (-1546.181) -- 0:06:42
454000 -- (-1551.804) (-1542.922) [-1556.195] (-1556.422) * (-1550.869) (-1545.127) [-1546.640] (-1560.308) -- 0:06:41
455000 -- (-1548.610) (-1555.473) (-1557.469) [-1543.363] * (-1544.448) (-1544.614) (-1543.276) [-1557.372] -- 0:06:40
Average standard deviation of split frequencies: 0.024390
456000 -- (-1548.946) (-1550.557) [-1545.629] (-1556.806) * (-1543.326) (-1546.446) [-1540.198] (-1544.353) -- 0:06:39
457000 -- (-1543.584) [-1539.980] (-1541.660) (-1565.067) * (-1537.642) (-1551.800) (-1548.066) [-1543.559] -- 0:06:39
458000 -- [-1539.874] (-1552.280) (-1546.224) (-1568.346) * (-1539.152) [-1548.613] (-1551.042) (-1548.791) -- 0:06:37
459000 -- [-1542.249] (-1539.304) (-1543.384) (-1551.932) * (-1539.179) (-1535.022) [-1548.540] (-1552.777) -- 0:06:37
460000 -- [-1542.425] (-1553.880) (-1568.698) (-1554.518) * (-1544.646) (-1539.707) [-1547.788] (-1549.157) -- 0:06:35
Average standard deviation of split frequencies: 0.023969
461000 -- (-1552.235) [-1544.307] (-1560.593) (-1550.469) * (-1550.790) [-1537.863] (-1543.342) (-1555.598) -- 0:06:35
462000 -- (-1553.231) [-1548.593] (-1551.723) (-1575.583) * (-1557.569) [-1550.182] (-1544.878) (-1564.287) -- 0:06:34
463000 -- [-1540.443] (-1538.944) (-1560.385) (-1548.913) * (-1542.051) (-1553.724) (-1543.883) [-1543.635] -- 0:06:33
464000 -- (-1557.817) (-1543.769) (-1563.049) [-1540.235] * (-1559.976) (-1548.392) (-1544.263) [-1534.074] -- 0:06:32
465000 -- [-1546.295] (-1538.594) (-1555.744) (-1550.793) * (-1570.973) [-1538.513] (-1549.736) (-1546.154) -- 0:06:31
Average standard deviation of split frequencies: 0.023604
466000 -- (-1558.556) [-1541.567] (-1550.390) (-1545.406) * (-1569.492) (-1548.750) (-1562.579) [-1534.937] -- 0:06:30
467000 -- (-1554.571) (-1557.751) (-1554.505) [-1550.474] * (-1562.864) (-1549.274) (-1543.938) [-1529.710] -- 0:06:30
468000 -- (-1545.503) (-1563.146) (-1543.170) [-1545.967] * (-1571.503) (-1548.147) (-1549.905) [-1536.064] -- 0:06:28
469000 -- (-1554.212) (-1556.844) (-1542.938) [-1538.598] * (-1584.962) [-1538.751] (-1543.769) (-1565.126) -- 0:06:28
470000 -- (-1544.507) (-1567.348) (-1545.901) [-1535.260] * (-1575.928) [-1542.138] (-1552.925) (-1551.012) -- 0:06:27
Average standard deviation of split frequencies: 0.023741
471000 -- (-1541.762) (-1558.150) (-1544.610) [-1538.523] * (-1548.736) (-1551.570) [-1543.353] (-1549.212) -- 0:06:26
472000 -- (-1548.473) (-1566.509) (-1547.420) [-1542.131] * (-1542.535) [-1539.016] (-1557.033) (-1550.058) -- 0:06:25
473000 -- (-1566.354) (-1545.532) [-1541.767] (-1556.743) * (-1556.842) (-1542.236) (-1559.749) [-1541.527] -- 0:06:24
474000 -- (-1552.571) [-1540.631] (-1568.390) (-1548.071) * (-1555.218) [-1541.140] (-1542.391) (-1545.728) -- 0:06:23
475000 -- (-1539.192) (-1565.777) (-1584.357) [-1546.433] * (-1546.650) (-1544.234) [-1536.637] (-1581.744) -- 0:06:23
Average standard deviation of split frequencies: 0.022668
476000 -- (-1564.913) (-1569.986) (-1575.667) [-1554.878] * (-1561.579) (-1538.049) [-1547.166] (-1574.356) -- 0:06:21
477000 -- (-1550.278) [-1547.844] (-1565.400) (-1564.151) * (-1555.789) [-1545.627] (-1558.992) (-1587.157) -- 0:06:21
478000 -- (-1556.775) [-1540.415] (-1556.402) (-1566.953) * [-1545.174] (-1552.654) (-1563.011) (-1554.349) -- 0:06:20
479000 -- (-1546.421) (-1550.645) (-1538.898) [-1546.634] * (-1550.809) [-1541.081] (-1546.313) (-1543.322) -- 0:06:19
480000 -- (-1558.783) [-1537.651] (-1543.732) (-1549.249) * (-1545.120) (-1539.879) (-1560.585) [-1536.445] -- 0:06:19
Average standard deviation of split frequencies: 0.020886
481000 -- [-1543.551] (-1558.406) (-1540.364) (-1569.705) * (-1545.141) (-1557.263) (-1551.562) [-1528.295] -- 0:06:17
482000 -- (-1538.678) (-1558.848) [-1535.230] (-1562.057) * (-1550.450) (-1558.071) (-1557.611) [-1534.158] -- 0:06:17
483000 -- [-1544.749] (-1564.842) (-1555.929) (-1536.099) * (-1544.357) (-1555.417) (-1566.974) [-1536.922] -- 0:06:15
484000 -- (-1543.090) (-1559.850) (-1557.398) [-1540.621] * (-1554.218) [-1541.762] (-1558.451) (-1538.514) -- 0:06:15
485000 -- [-1546.933] (-1575.576) (-1548.009) (-1534.461) * (-1537.571) (-1543.004) [-1535.505] (-1557.435) -- 0:06:14
Average standard deviation of split frequencies: 0.020543
486000 -- [-1541.777] (-1571.212) (-1562.120) (-1533.864) * [-1536.189] (-1561.900) (-1541.653) (-1544.038) -- 0:06:13
487000 -- [-1537.685] (-1548.677) (-1560.784) (-1559.327) * (-1539.921) (-1542.952) [-1539.040] (-1549.659) -- 0:06:12
488000 -- (-1543.107) (-1553.243) (-1567.200) [-1545.571] * (-1561.380) (-1546.954) [-1537.795] (-1563.816) -- 0:06:11
489000 -- [-1536.555] (-1543.193) (-1554.914) (-1548.901) * (-1560.866) (-1566.687) (-1545.361) [-1552.068] -- 0:06:10
490000 -- [-1539.769] (-1539.125) (-1564.853) (-1543.726) * (-1537.703) (-1554.484) [-1540.572] (-1562.384) -- 0:06:10
Average standard deviation of split frequencies: 0.020416
491000 -- [-1543.774] (-1544.707) (-1556.893) (-1538.758) * [-1534.927] (-1552.412) (-1538.426) (-1552.258) -- 0:06:09
492000 -- [-1544.902] (-1552.663) (-1552.602) (-1542.857) * [-1537.949] (-1570.516) (-1550.384) (-1549.380) -- 0:06:08
493000 -- (-1558.660) [-1542.548] (-1554.677) (-1537.406) * (-1547.103) (-1555.696) [-1545.478] (-1547.821) -- 0:06:07
494000 -- (-1542.514) [-1541.111] (-1561.617) (-1547.304) * [-1544.046] (-1543.483) (-1548.065) (-1558.007) -- 0:06:06
495000 -- [-1536.419] (-1549.253) (-1558.110) (-1548.865) * (-1554.176) (-1553.760) [-1539.584] (-1569.691) -- 0:06:06
Average standard deviation of split frequencies: 0.019687
496000 -- [-1539.748] (-1552.868) (-1545.918) (-1543.914) * (-1546.905) [-1556.115] (-1542.711) (-1563.124) -- 0:06:04
497000 -- (-1543.619) (-1543.430) (-1557.249) [-1548.695] * (-1563.253) [-1548.825] (-1543.528) (-1567.699) -- 0:06:04
498000 -- (-1543.056) [-1546.610] (-1547.151) (-1553.618) * (-1559.621) (-1558.206) [-1537.332] (-1544.963) -- 0:06:02
499000 -- (-1543.961) (-1559.601) [-1542.952] (-1548.578) * (-1550.968) (-1557.773) (-1553.540) [-1549.161] -- 0:06:02
500000 -- [-1549.164] (-1568.975) (-1557.153) (-1554.761) * [-1544.507] (-1551.387) (-1551.134) (-1558.676) -- 0:06:02
Average standard deviation of split frequencies: 0.019005
501000 -- (-1541.899) (-1552.185) (-1548.325) [-1539.336] * [-1536.066] (-1541.449) (-1550.995) (-1548.235) -- 0:06:00
502000 -- [-1544.974] (-1553.911) (-1562.792) (-1549.276) * (-1540.689) [-1540.141] (-1545.454) (-1540.301) -- 0:06:00
503000 -- [-1547.886] (-1565.481) (-1547.772) (-1561.036) * (-1551.804) (-1553.219) [-1537.300] (-1567.861) -- 0:05:59
504000 -- (-1551.921) (-1559.541) (-1546.258) [-1544.479] * (-1544.028) (-1562.071) (-1536.088) [-1551.365] -- 0:05:58
505000 -- (-1554.505) [-1551.850] (-1553.076) (-1544.697) * (-1554.082) (-1549.461) [-1545.994] (-1554.572) -- 0:05:57
Average standard deviation of split frequencies: 0.018233
506000 -- (-1565.376) (-1551.786) (-1540.914) [-1536.268] * (-1550.439) [-1547.697] (-1535.137) (-1564.059) -- 0:05:56
507000 -- (-1567.264) (-1558.318) (-1542.377) [-1529.673] * (-1557.348) (-1548.627) [-1537.550] (-1556.830) -- 0:05:55
508000 -- (-1555.247) [-1552.135] (-1542.972) (-1531.915) * [-1545.062] (-1555.153) (-1548.283) (-1539.347) -- 0:05:55
509000 -- (-1558.175) (-1559.051) (-1558.955) [-1541.119] * (-1540.902) [-1545.838] (-1552.692) (-1566.632) -- 0:05:54
510000 -- (-1556.086) (-1550.057) [-1541.737] (-1543.774) * (-1550.886) [-1536.000] (-1541.881) (-1556.035) -- 0:05:53
Average standard deviation of split frequencies: 0.019314
511000 -- (-1545.348) (-1546.682) (-1544.382) [-1550.292] * [-1531.052] (-1558.609) (-1564.822) (-1557.209) -- 0:05:52
512000 -- (-1565.086) (-1553.084) (-1549.271) [-1546.075] * (-1552.068) (-1546.572) [-1543.969] (-1543.481) -- 0:05:51
513000 -- (-1559.700) (-1558.208) (-1532.823) [-1537.479] * [-1545.878] (-1542.925) (-1565.204) (-1542.821) -- 0:05:51
514000 -- (-1560.573) (-1546.118) (-1543.199) [-1542.132] * (-1550.410) [-1538.277] (-1592.868) (-1552.748) -- 0:05:49
515000 -- (-1555.751) (-1552.511) (-1556.308) [-1535.921] * [-1548.283] (-1551.850) (-1572.709) (-1547.085) -- 0:05:49
Average standard deviation of split frequencies: 0.019220
516000 -- (-1558.328) (-1546.088) (-1554.011) [-1536.248] * (-1542.274) (-1556.572) [-1542.893] (-1550.163) -- 0:05:47
517000 -- (-1548.735) (-1545.972) (-1556.759) [-1535.984] * (-1552.049) (-1540.723) (-1552.250) [-1545.270] -- 0:05:47
518000 -- (-1548.773) [-1542.876] (-1550.296) (-1547.907) * (-1545.158) (-1546.220) [-1539.418] (-1552.022) -- 0:05:47
519000 -- (-1555.373) (-1538.037) (-1563.292) [-1541.570] * (-1545.109) (-1551.467) (-1546.865) [-1546.648] -- 0:05:45
520000 -- (-1562.721) [-1534.807] (-1548.160) (-1538.106) * [-1542.977] (-1567.886) (-1552.448) (-1544.500) -- 0:05:45
Average standard deviation of split frequencies: 0.018491
521000 -- (-1558.747) [-1536.845] (-1534.439) (-1544.371) * [-1536.453] (-1544.510) (-1572.027) (-1553.717) -- 0:05:43
522000 -- (-1546.436) (-1539.695) [-1552.639] (-1543.150) * [-1540.506] (-1546.278) (-1545.200) (-1552.144) -- 0:05:43
523000 -- (-1560.053) [-1539.341] (-1563.826) (-1541.623) * [-1540.604] (-1548.538) (-1557.674) (-1563.848) -- 0:05:42
524000 -- (-1568.712) (-1540.626) (-1568.942) [-1533.465] * [-1542.709] (-1574.728) (-1550.050) (-1556.197) -- 0:05:41
525000 -- [-1541.102] (-1550.530) (-1553.898) (-1548.025) * (-1535.579) (-1548.451) [-1543.958] (-1572.427) -- 0:05:41
Average standard deviation of split frequencies: 0.017476
526000 -- (-1563.367) [-1541.045] (-1548.689) (-1542.584) * (-1546.595) (-1558.361) [-1548.753] (-1565.286) -- 0:05:40
527000 -- (-1559.584) [-1542.619] (-1565.232) (-1551.620) * [-1544.112] (-1540.351) (-1547.788) (-1552.372) -- 0:05:39
528000 -- (-1547.413) [-1532.668] (-1567.744) (-1555.372) * (-1551.565) (-1555.557) (-1538.829) [-1536.930] -- 0:05:38
529000 -- (-1566.107) (-1546.597) (-1566.704) [-1544.298] * (-1547.088) (-1545.937) [-1535.194] (-1555.467) -- 0:05:37
530000 -- (-1560.630) (-1539.887) (-1551.939) [-1543.761] * (-1533.971) (-1554.843) (-1538.349) [-1541.391] -- 0:05:36
Average standard deviation of split frequencies: 0.016779
531000 -- [-1546.219] (-1538.601) (-1556.945) (-1554.582) * (-1547.277) (-1555.510) [-1537.213] (-1552.780) -- 0:05:36
532000 -- (-1550.868) [-1542.675] (-1543.534) (-1537.371) * (-1559.100) [-1551.763] (-1540.706) (-1557.215) -- 0:05:35
533000 -- (-1549.595) (-1542.727) [-1542.447] (-1552.420) * (-1557.511) [-1544.730] (-1546.228) (-1560.520) -- 0:05:34
534000 -- (-1551.469) (-1566.048) [-1542.005] (-1548.601) * [-1541.629] (-1563.141) (-1545.849) (-1560.075) -- 0:05:33
535000 -- (-1561.170) (-1588.465) [-1545.020] (-1551.340) * (-1550.917) (-1580.467) (-1558.711) [-1543.884] -- 0:05:32
Average standard deviation of split frequencies: 0.017906
536000 -- (-1555.762) (-1557.334) (-1553.545) [-1542.835] * (-1559.597) (-1571.937) (-1550.006) [-1545.624] -- 0:05:32
537000 -- (-1542.627) (-1561.945) (-1544.472) [-1542.499] * (-1565.874) (-1558.704) (-1554.338) [-1539.892] -- 0:05:31
538000 -- (-1547.805) [-1544.489] (-1556.635) (-1543.662) * (-1562.114) (-1550.688) [-1536.057] (-1548.141) -- 0:05:30
539000 -- (-1553.696) (-1544.277) [-1547.573] (-1572.023) * (-1562.618) (-1542.252) [-1544.022] (-1548.057) -- 0:05:29
540000 -- (-1553.116) [-1541.433] (-1548.017) (-1566.818) * (-1546.136) [-1532.983] (-1554.381) (-1551.221) -- 0:05:28
Average standard deviation of split frequencies: 0.018444
541000 -- (-1555.478) [-1533.601] (-1543.002) (-1560.597) * [-1551.111] (-1535.776) (-1542.619) (-1573.314) -- 0:05:28
542000 -- (-1544.623) (-1542.425) [-1537.747] (-1561.540) * (-1549.269) [-1548.866] (-1544.804) (-1568.219) -- 0:05:27
543000 -- (-1543.485) [-1541.873] (-1541.416) (-1562.177) * (-1544.464) [-1550.890] (-1553.683) (-1562.694) -- 0:05:26
544000 -- (-1554.496) (-1542.282) [-1532.588] (-1542.866) * [-1545.546] (-1544.051) (-1544.730) (-1550.131) -- 0:05:25
545000 -- (-1538.873) (-1548.510) (-1540.730) [-1540.944] * (-1558.385) (-1562.743) [-1543.392] (-1562.044) -- 0:05:24
Average standard deviation of split frequencies: 0.017875
546000 -- (-1541.848) (-1542.594) (-1552.710) [-1543.044] * (-1543.172) (-1568.006) (-1538.928) [-1538.367] -- 0:05:24
547000 -- (-1563.823) [-1533.027] (-1554.046) (-1558.538) * (-1542.529) (-1557.439) [-1541.287] (-1542.472) -- 0:05:22
548000 -- (-1554.611) [-1537.752] (-1542.938) (-1549.053) * [-1537.310] (-1559.217) (-1533.336) (-1562.511) -- 0:05:22
549000 -- (-1574.754) (-1540.673) (-1552.381) [-1547.226] * [-1534.497] (-1567.976) (-1550.655) (-1544.134) -- 0:05:21
550000 -- (-1555.260) [-1539.968] (-1542.639) (-1554.335) * (-1543.716) (-1583.469) (-1562.043) [-1533.131] -- 0:05:20
Average standard deviation of split frequencies: 0.018421
551000 -- (-1565.093) (-1554.705) (-1546.045) [-1554.295] * (-1546.919) (-1579.950) (-1557.912) [-1527.207] -- 0:05:20
552000 -- (-1557.257) (-1552.937) (-1543.307) [-1552.855] * (-1541.375) (-1569.600) (-1544.199) [-1543.041] -- 0:05:18
553000 -- (-1577.214) (-1555.910) (-1549.755) [-1547.181] * (-1535.177) (-1551.082) (-1561.683) [-1540.229] -- 0:05:18
554000 -- (-1571.051) [-1550.587] (-1546.380) (-1550.636) * [-1533.405] (-1560.669) (-1554.614) (-1532.760) -- 0:05:17
555000 -- [-1548.835] (-1561.802) (-1553.536) (-1556.901) * (-1540.887) (-1541.405) (-1568.543) [-1540.938] -- 0:05:16
Average standard deviation of split frequencies: 0.017805
556000 -- (-1541.055) (-1548.501) [-1533.140] (-1554.200) * [-1538.393] (-1553.256) (-1545.874) (-1543.058) -- 0:05:16
557000 -- (-1555.139) (-1554.267) [-1541.723] (-1548.481) * [-1543.467] (-1544.285) (-1541.957) (-1548.090) -- 0:05:14
558000 -- (-1551.794) (-1543.262) (-1549.933) [-1532.866] * (-1533.964) (-1552.613) [-1539.515] (-1551.452) -- 0:05:14
559000 -- (-1567.870) (-1542.693) (-1557.855) [-1545.001] * (-1548.675) [-1534.289] (-1536.924) (-1564.813) -- 0:05:13
560000 -- (-1545.088) [-1537.074] (-1562.271) (-1542.356) * [-1542.935] (-1541.638) (-1550.731) (-1570.016) -- 0:05:12
Average standard deviation of split frequencies: 0.018464
561000 -- (-1572.970) (-1542.400) [-1541.933] (-1547.556) * (-1552.921) (-1549.849) [-1554.622] (-1559.650) -- 0:05:12
562000 -- (-1550.116) (-1548.332) [-1542.254] (-1555.828) * (-1551.069) [-1547.211] (-1554.992) (-1553.713) -- 0:05:10
563000 -- [-1546.375] (-1539.649) (-1543.909) (-1571.722) * (-1552.230) (-1554.885) [-1540.041] (-1562.179) -- 0:05:10
564000 -- [-1551.857] (-1543.909) (-1547.220) (-1544.402) * (-1567.128) [-1545.401] (-1545.564) (-1550.859) -- 0:05:09
565000 -- (-1546.364) (-1541.388) (-1547.493) [-1546.463] * (-1541.571) (-1543.897) [-1537.980] (-1558.679) -- 0:05:08
Average standard deviation of split frequencies: 0.018195
566000 -- (-1542.279) [-1543.118] (-1569.661) (-1548.301) * (-1538.587) (-1542.589) [-1544.097] (-1543.959) -- 0:05:08
567000 -- (-1539.357) (-1573.743) [-1547.434] (-1541.754) * (-1545.064) (-1545.286) [-1538.131] (-1548.832) -- 0:05:06
568000 -- [-1541.315] (-1554.036) (-1544.727) (-1552.162) * (-1553.850) (-1537.150) [-1536.006] (-1549.922) -- 0:05:06
569000 -- [-1539.242] (-1543.726) (-1544.680) (-1558.921) * (-1563.470) [-1539.542] (-1550.021) (-1547.330) -- 0:05:05
570000 -- (-1541.934) [-1543.466] (-1546.086) (-1540.020) * (-1564.968) (-1552.407) [-1550.482] (-1545.051) -- 0:05:04
Average standard deviation of split frequencies: 0.017887
571000 -- (-1537.893) (-1559.726) (-1543.002) [-1542.850] * (-1545.140) (-1561.716) (-1552.574) [-1536.564] -- 0:05:04
572000 -- (-1542.213) [-1554.895] (-1545.969) (-1551.269) * (-1541.494) (-1549.795) [-1538.438] (-1546.226) -- 0:05:03
573000 -- (-1551.108) [-1543.529] (-1547.116) (-1553.033) * (-1568.071) (-1551.961) (-1557.623) [-1545.883] -- 0:05:02
574000 -- (-1561.501) [-1537.917] (-1543.075) (-1543.674) * (-1546.392) [-1538.447] (-1539.478) (-1540.426) -- 0:05:01
575000 -- [-1537.930] (-1545.206) (-1555.876) (-1542.971) * (-1544.091) (-1550.507) [-1539.046] (-1546.879) -- 0:05:00
Average standard deviation of split frequencies: 0.017884
576000 -- (-1542.222) (-1536.214) (-1547.348) [-1548.881] * (-1558.807) (-1553.910) [-1542.228] (-1571.278) -- 0:05:00
577000 -- (-1541.154) (-1554.227) (-1574.488) [-1544.087] * (-1538.290) (-1550.641) [-1535.962] (-1547.773) -- 0:04:59
578000 -- (-1552.963) (-1539.365) (-1558.096) [-1540.283] * [-1550.386] (-1542.154) (-1554.244) (-1553.051) -- 0:04:58
579000 -- [-1537.497] (-1550.915) (-1546.526) (-1543.152) * (-1544.346) (-1547.814) (-1558.250) [-1538.383] -- 0:04:57
580000 -- (-1543.470) (-1542.117) [-1540.131] (-1543.376) * (-1539.279) [-1543.444] (-1535.873) (-1544.046) -- 0:04:56
Average standard deviation of split frequencies: 0.017890
581000 -- (-1554.514) (-1541.437) (-1562.602) [-1547.515] * (-1545.917) (-1552.901) (-1540.893) [-1544.642] -- 0:04:56
582000 -- (-1541.044) [-1540.266] (-1535.877) (-1547.862) * (-1562.293) [-1544.505] (-1534.337) (-1553.787) -- 0:04:55
583000 -- (-1562.558) [-1533.540] (-1545.108) (-1538.165) * (-1553.626) [-1543.584] (-1556.308) (-1554.024) -- 0:04:54
584000 -- (-1555.439) (-1540.590) (-1553.785) [-1544.171] * (-1584.847) (-1545.955) (-1569.001) [-1548.663] -- 0:04:53
585000 -- (-1543.702) (-1541.335) (-1556.395) [-1546.449] * (-1560.759) (-1542.857) (-1559.632) [-1545.868] -- 0:04:52
Average standard deviation of split frequencies: 0.018323
586000 -- [-1545.316] (-1543.745) (-1574.605) (-1551.768) * (-1552.747) [-1545.160] (-1551.194) (-1553.954) -- 0:04:52
587000 -- (-1542.439) [-1550.683] (-1550.886) (-1554.655) * (-1560.859) (-1548.492) [-1537.465] (-1538.539) -- 0:04:51
588000 -- [-1546.636] (-1551.472) (-1540.530) (-1561.408) * (-1547.725) (-1568.090) [-1540.734] (-1550.312) -- 0:04:50
589000 -- (-1541.693) (-1573.180) (-1550.753) [-1539.307] * (-1541.074) (-1558.803) [-1542.361] (-1535.361) -- 0:04:49
590000 -- (-1556.134) (-1548.789) [-1549.904] (-1546.483) * [-1553.082] (-1540.655) (-1556.326) (-1560.998) -- 0:04:49
Average standard deviation of split frequencies: 0.017144
591000 -- (-1561.515) [-1547.432] (-1552.345) (-1548.443) * (-1561.413) (-1553.661) [-1550.237] (-1561.524) -- 0:04:48
592000 -- (-1555.817) (-1555.074) [-1539.096] (-1549.415) * (-1550.372) (-1548.868) (-1550.643) [-1532.051] -- 0:04:47
593000 -- [-1536.336] (-1547.068) (-1543.865) (-1553.986) * [-1535.188] (-1564.505) (-1544.387) (-1548.803) -- 0:04:46
594000 -- [-1535.737] (-1547.718) (-1543.698) (-1550.886) * [-1538.252] (-1562.614) (-1543.850) (-1549.049) -- 0:04:45
595000 -- [-1538.881] (-1545.320) (-1544.825) (-1552.518) * [-1548.361] (-1550.988) (-1540.265) (-1561.086) -- 0:04:45
Average standard deviation of split frequencies: 0.017279
596000 -- [-1532.721] (-1569.984) (-1548.878) (-1542.299) * (-1551.388) (-1543.177) [-1546.172] (-1558.768) -- 0:04:44
597000 -- (-1553.991) (-1574.991) (-1544.097) [-1535.378] * (-1546.439) (-1540.072) (-1563.394) [-1544.636] -- 0:04:43
598000 -- (-1550.005) (-1581.223) [-1543.906] (-1548.123) * [-1553.699] (-1563.160) (-1554.417) (-1550.801) -- 0:04:43
599000 -- (-1562.042) (-1552.571) [-1538.961] (-1549.990) * (-1554.324) (-1552.302) (-1547.208) [-1534.565] -- 0:04:41
600000 -- (-1555.351) [-1548.093] (-1548.193) (-1563.284) * (-1553.039) (-1555.969) (-1552.648) [-1537.983] -- 0:04:41
Average standard deviation of split frequencies: 0.016541
601000 -- (-1556.096) (-1554.532) [-1547.704] (-1556.959) * [-1537.631] (-1542.480) (-1545.279) (-1544.529) -- 0:04:40
602000 -- (-1550.099) (-1557.161) (-1554.967) [-1546.336] * [-1534.249] (-1552.781) (-1555.358) (-1560.897) -- 0:04:39
603000 -- [-1537.466] (-1542.907) (-1560.674) (-1555.933) * (-1535.740) (-1555.741) (-1561.868) [-1549.794] -- 0:04:39
604000 -- [-1544.338] (-1554.371) (-1537.900) (-1555.559) * [-1531.398] (-1540.086) (-1556.428) (-1536.238) -- 0:04:37
605000 -- [-1542.712] (-1532.200) (-1547.214) (-1547.654) * (-1537.890) [-1533.473] (-1554.831) (-1555.466) -- 0:04:37
Average standard deviation of split frequencies: 0.016048
606000 -- (-1559.670) [-1542.037] (-1550.714) (-1540.152) * [-1540.472] (-1553.728) (-1555.952) (-1553.650) -- 0:04:36
607000 -- (-1561.968) (-1544.776) [-1536.848] (-1543.601) * (-1532.212) (-1540.030) [-1556.597] (-1561.493) -- 0:04:35
608000 -- (-1558.262) [-1548.735] (-1555.915) (-1554.874) * [-1541.425] (-1536.928) (-1559.279) (-1546.119) -- 0:04:35
609000 -- (-1556.568) (-1544.951) (-1545.456) [-1545.023] * [-1533.018] (-1548.021) (-1560.675) (-1552.536) -- 0:04:34
610000 -- (-1546.977) (-1543.423) [-1552.883] (-1554.229) * (-1542.602) [-1534.863] (-1555.996) (-1552.283) -- 0:04:33
Average standard deviation of split frequencies: 0.016359
611000 -- (-1551.527) [-1545.519] (-1539.680) (-1544.326) * (-1533.260) (-1544.398) [-1544.546] (-1569.899) -- 0:04:33
612000 -- (-1553.185) (-1550.139) (-1553.799) [-1545.095] * (-1535.945) [-1534.098] (-1553.799) (-1554.303) -- 0:04:32
613000 -- (-1542.094) (-1545.692) (-1548.280) [-1555.851] * [-1530.995] (-1544.320) (-1554.124) (-1542.036) -- 0:04:31
614000 -- (-1541.911) [-1545.809] (-1558.412) (-1556.795) * (-1541.132) [-1548.306] (-1556.023) (-1554.892) -- 0:04:30
615000 -- (-1534.210) [-1544.984] (-1561.051) (-1555.294) * [-1547.545] (-1553.941) (-1544.313) (-1553.513) -- 0:04:30
Average standard deviation of split frequencies: 0.017173
616000 -- (-1551.171) [-1544.754] (-1554.223) (-1535.339) * (-1541.940) (-1550.518) [-1546.477] (-1549.204) -- 0:04:29
617000 -- (-1554.573) (-1554.465) [-1545.321] (-1541.814) * [-1539.663] (-1534.776) (-1552.273) (-1549.187) -- 0:04:28
618000 -- (-1539.900) (-1569.363) (-1540.733) [-1536.385] * (-1538.524) [-1536.883] (-1564.516) (-1558.861) -- 0:04:27
619000 -- (-1539.394) [-1544.921] (-1546.493) (-1546.340) * [-1531.824] (-1538.175) (-1550.273) (-1573.406) -- 0:04:27
620000 -- (-1535.804) (-1553.939) (-1552.326) [-1538.945] * (-1554.220) [-1540.721] (-1543.645) (-1566.996) -- 0:04:26
Average standard deviation of split frequencies: 0.016952
621000 -- (-1546.459) (-1548.293) (-1550.558) [-1544.452] * [-1542.038] (-1541.963) (-1540.615) (-1556.370) -- 0:04:25
622000 -- (-1545.945) (-1555.498) (-1568.544) [-1542.922] * [-1545.064] (-1544.745) (-1546.927) (-1556.266) -- 0:04:24
623000 -- (-1544.655) (-1552.175) (-1558.065) [-1542.802] * (-1564.768) (-1543.191) [-1534.960] (-1556.694) -- 0:04:23
624000 -- (-1566.933) (-1544.329) (-1557.041) [-1544.246] * (-1560.694) (-1541.078) (-1548.293) [-1543.872] -- 0:04:23
625000 -- (-1550.862) (-1549.032) (-1545.487) [-1550.123] * [-1551.156] (-1546.968) (-1570.331) (-1560.426) -- 0:04:22
Average standard deviation of split frequencies: 0.016567
626000 -- [-1537.199] (-1548.469) (-1555.005) (-1550.141) * (-1553.754) (-1556.759) [-1543.172] (-1555.309) -- 0:04:21
627000 -- [-1536.018] (-1546.400) (-1546.369) (-1551.315) * (-1548.079) (-1554.479) (-1552.243) [-1551.749] -- 0:04:21
628000 -- [-1527.002] (-1558.695) (-1548.676) (-1548.513) * (-1556.812) [-1547.194] (-1539.642) (-1550.757) -- 0:04:20
629000 -- (-1535.069) (-1539.491) (-1538.533) [-1552.921] * (-1579.072) [-1543.485] (-1550.859) (-1559.370) -- 0:04:19
630000 -- (-1536.899) (-1540.930) [-1548.992] (-1549.887) * (-1551.022) (-1550.654) [-1546.527] (-1550.884) -- 0:04:19
Average standard deviation of split frequencies: 0.015582
631000 -- (-1542.827) [-1542.126] (-1544.448) (-1542.488) * (-1546.907) (-1553.093) [-1541.338] (-1556.327) -- 0:04:17
632000 -- (-1546.494) [-1554.737] (-1570.945) (-1546.734) * (-1552.344) (-1560.435) (-1540.092) [-1543.853] -- 0:04:17
633000 -- (-1549.421) [-1541.275] (-1556.201) (-1553.306) * (-1548.830) [-1534.251] (-1537.511) (-1565.028) -- 0:04:16
634000 -- (-1564.976) (-1553.642) (-1567.240) [-1542.860] * (-1567.452) [-1537.860] (-1548.098) (-1544.555) -- 0:04:15
635000 -- (-1547.119) (-1552.854) (-1552.939) [-1542.720] * [-1557.242] (-1564.764) (-1545.558) (-1550.751) -- 0:04:15
Average standard deviation of split frequencies: 0.014225
636000 -- (-1547.743) (-1552.223) (-1556.112) [-1546.348] * (-1547.246) [-1559.395] (-1550.897) (-1561.770) -- 0:04:14
637000 -- (-1549.126) (-1548.599) (-1551.266) [-1546.671] * (-1550.338) (-1560.520) (-1558.052) [-1539.526] -- 0:04:13
638000 -- [-1536.852] (-1537.970) (-1544.209) (-1547.560) * (-1543.734) (-1548.804) (-1565.305) [-1543.508] -- 0:04:13
639000 -- (-1541.666) (-1552.852) (-1553.157) [-1537.103] * [-1541.490] (-1542.205) (-1557.246) (-1545.917) -- 0:04:11
640000 -- (-1554.286) [-1545.711] (-1553.803) (-1551.528) * (-1572.825) [-1552.799] (-1557.777) (-1543.733) -- 0:04:11
Average standard deviation of split frequencies: 0.013980
641000 -- (-1548.367) [-1560.309] (-1550.821) (-1540.387) * (-1570.658) (-1555.328) [-1548.974] (-1551.041) -- 0:04:10
642000 -- (-1553.254) (-1562.902) (-1549.283) [-1536.288] * (-1556.254) (-1541.282) (-1550.242) [-1543.063] -- 0:04:09
643000 -- [-1540.424] (-1545.188) (-1547.409) (-1545.455) * (-1550.492) (-1555.481) (-1558.563) [-1534.842] -- 0:04:09
644000 -- (-1544.650) [-1537.012] (-1549.735) (-1545.269) * [-1550.781] (-1562.142) (-1574.990) (-1552.407) -- 0:04:08
645000 -- (-1551.352) (-1542.399) (-1550.322) [-1541.070] * [-1544.170] (-1549.264) (-1556.318) (-1546.698) -- 0:04:07
Average standard deviation of split frequencies: 0.013811
646000 -- [-1540.198] (-1545.856) (-1552.973) (-1555.749) * [-1545.921] (-1548.831) (-1567.137) (-1566.178) -- 0:04:06
647000 -- (-1553.764) [-1538.270] (-1553.663) (-1571.808) * (-1550.496) [-1538.484] (-1553.712) (-1551.798) -- 0:04:06
648000 -- [-1546.537] (-1538.813) (-1557.432) (-1562.120) * (-1553.679) (-1535.609) [-1543.952] (-1546.129) -- 0:04:05
649000 -- (-1556.512) [-1546.401] (-1560.165) (-1550.692) * (-1547.989) (-1551.200) [-1530.092] (-1561.363) -- 0:04:04
650000 -- (-1539.940) [-1538.137] (-1559.999) (-1555.216) * (-1553.993) [-1538.362] (-1545.632) (-1553.512) -- 0:04:03
Average standard deviation of split frequencies: 0.013926
651000 -- (-1546.598) [-1540.175] (-1568.368) (-1544.464) * (-1542.161) [-1546.446] (-1550.731) (-1568.979) -- 0:04:02
652000 -- (-1555.958) [-1547.046] (-1547.752) (-1552.343) * [-1546.338] (-1550.726) (-1543.572) (-1562.644) -- 0:04:02
653000 -- (-1563.400) (-1557.881) [-1541.889] (-1551.787) * (-1544.543) (-1548.987) (-1539.495) [-1537.831] -- 0:04:01
654000 -- (-1545.458) [-1551.147] (-1545.941) (-1555.061) * [-1543.304] (-1557.413) (-1542.768) (-1549.191) -- 0:04:00
655000 -- (-1547.099) [-1539.747] (-1543.180) (-1559.079) * [-1540.581] (-1548.601) (-1543.748) (-1548.472) -- 0:04:00
Average standard deviation of split frequencies: 0.014704
656000 -- [-1535.403] (-1536.365) (-1546.771) (-1555.767) * (-1538.395) [-1542.005] (-1552.712) (-1558.876) -- 0:03:59
657000 -- (-1543.740) (-1539.942) (-1558.347) [-1556.261] * [-1536.885] (-1551.332) (-1561.107) (-1556.558) -- 0:03:58
658000 -- (-1556.681) (-1537.422) (-1561.113) [-1545.489] * [-1540.699] (-1552.010) (-1548.167) (-1571.710) -- 0:03:58
659000 -- [-1535.172] (-1542.030) (-1570.361) (-1557.935) * [-1538.080] (-1553.865) (-1548.638) (-1560.130) -- 0:03:56
660000 -- [-1539.563] (-1548.591) (-1556.980) (-1552.377) * (-1537.605) [-1551.344] (-1552.819) (-1546.907) -- 0:03:56
Average standard deviation of split frequencies: 0.014627
661000 -- [-1536.170] (-1561.499) (-1549.124) (-1558.051) * (-1553.624) (-1553.134) [-1546.018] (-1553.348) -- 0:03:55
662000 -- [-1540.634] (-1551.738) (-1569.182) (-1548.522) * (-1542.468) (-1545.821) [-1536.350] (-1556.067) -- 0:03:54
663000 -- [-1544.349] (-1555.789) (-1561.566) (-1545.239) * (-1565.315) (-1545.458) [-1534.257] (-1551.921) -- 0:03:54
664000 -- [-1550.391] (-1553.736) (-1531.576) (-1539.838) * (-1560.070) [-1544.927] (-1566.696) (-1546.572) -- 0:03:53
665000 -- (-1550.632) (-1542.913) (-1543.928) [-1537.454] * (-1548.435) [-1546.726] (-1578.643) (-1544.481) -- 0:03:52
Average standard deviation of split frequencies: 0.014235
666000 -- (-1545.102) (-1570.512) (-1552.736) [-1547.881] * (-1541.115) (-1541.582) (-1559.952) [-1542.189] -- 0:03:51
667000 -- [-1540.229] (-1541.782) (-1554.330) (-1555.037) * (-1550.793) [-1543.145] (-1569.706) (-1549.475) -- 0:03:51
668000 -- (-1549.371) [-1538.476] (-1556.508) (-1551.612) * (-1562.620) (-1558.736) (-1557.805) [-1539.485] -- 0:03:50
669000 -- (-1559.472) [-1537.331] (-1562.315) (-1545.761) * (-1555.893) [-1544.509] (-1560.881) (-1541.908) -- 0:03:49
670000 -- (-1558.613) (-1561.921) (-1551.859) [-1554.058] * (-1559.025) (-1546.716) (-1553.498) [-1527.707] -- 0:03:49
Average standard deviation of split frequencies: 0.014422
671000 -- (-1554.448) (-1548.813) [-1547.642] (-1556.430) * [-1541.120] (-1552.707) (-1558.392) (-1538.268) -- 0:03:47
672000 -- (-1554.077) [-1551.832] (-1549.143) (-1541.592) * (-1541.413) (-1541.551) [-1536.444] (-1550.876) -- 0:03:47
673000 -- (-1549.560) [-1541.746] (-1565.444) (-1549.918) * [-1537.430] (-1551.018) (-1538.953) (-1544.688) -- 0:03:46
674000 -- [-1538.913] (-1546.005) (-1563.069) (-1542.369) * (-1545.085) (-1540.597) [-1547.124] (-1550.091) -- 0:03:45
675000 -- [-1556.725] (-1558.373) (-1564.001) (-1544.407) * (-1559.497) [-1540.385] (-1552.329) (-1546.163) -- 0:03:45
Average standard deviation of split frequencies: 0.014322
676000 -- (-1557.080) (-1547.639) (-1545.635) [-1533.777] * (-1570.181) (-1541.839) (-1559.010) [-1544.950] -- 0:03:44
677000 -- (-1552.585) (-1558.023) (-1537.116) [-1539.494] * (-1586.856) [-1542.673] (-1558.581) (-1544.619) -- 0:03:43
678000 -- (-1551.049) (-1559.057) (-1556.525) [-1551.143] * (-1565.879) [-1536.298] (-1552.245) (-1544.288) -- 0:03:43
679000 -- [-1553.539] (-1548.800) (-1548.983) (-1549.486) * (-1549.752) (-1556.611) [-1552.703] (-1546.944) -- 0:03:42
680000 -- (-1547.635) (-1559.856) (-1546.020) [-1546.340] * (-1536.299) (-1553.200) (-1540.529) [-1544.546] -- 0:03:41
Average standard deviation of split frequencies: 0.015077
681000 -- (-1552.644) (-1553.615) (-1551.400) [-1540.493] * (-1545.211) (-1568.573) (-1547.244) [-1541.959] -- 0:03:41
682000 -- [-1553.367] (-1545.390) (-1556.740) (-1540.530) * (-1547.445) (-1548.383) (-1553.281) [-1551.104] -- 0:03:40
683000 -- (-1559.477) (-1544.875) [-1554.077] (-1547.942) * (-1547.266) (-1539.082) (-1549.508) [-1541.786] -- 0:03:39
684000 -- (-1561.501) [-1551.529] (-1546.906) (-1544.368) * (-1547.158) [-1542.232] (-1549.839) (-1546.797) -- 0:03:38
685000 -- (-1565.743) (-1545.753) [-1547.853] (-1550.845) * [-1541.255] (-1537.945) (-1558.380) (-1552.072) -- 0:03:37
Average standard deviation of split frequencies: 0.014933
686000 -- [-1547.454] (-1555.518) (-1548.231) (-1548.821) * (-1538.191) [-1550.087] (-1550.905) (-1551.160) -- 0:03:37
687000 -- [-1539.585] (-1552.226) (-1547.158) (-1561.429) * (-1550.785) [-1537.965] (-1547.378) (-1554.281) -- 0:03:36
688000 -- [-1544.539] (-1548.407) (-1563.238) (-1549.972) * [-1538.634] (-1537.053) (-1543.949) (-1570.279) -- 0:03:35
689000 -- (-1554.458) (-1553.678) (-1556.581) [-1545.973] * [-1541.940] (-1547.321) (-1549.590) (-1571.415) -- 0:03:34
690000 -- (-1569.813) (-1545.156) [-1548.851] (-1539.366) * (-1552.327) [-1541.832] (-1556.196) (-1556.106) -- 0:03:34
Average standard deviation of split frequencies: 0.013519
691000 -- (-1567.093) (-1550.250) [-1540.414] (-1545.220) * (-1544.808) [-1534.378] (-1558.675) (-1541.307) -- 0:03:33
692000 -- (-1552.400) (-1555.956) [-1536.332] (-1558.556) * [-1536.240] (-1545.531) (-1553.900) (-1557.197) -- 0:03:32
693000 -- (-1572.300) (-1565.833) [-1535.300] (-1561.748) * (-1550.473) (-1541.431) [-1542.750] (-1545.576) -- 0:03:32
694000 -- (-1587.883) (-1551.924) [-1536.578] (-1557.437) * [-1540.023] (-1544.710) (-1559.079) (-1550.002) -- 0:03:31
695000 -- (-1567.623) (-1543.583) (-1547.729) [-1535.207] * (-1534.488) [-1544.193] (-1550.351) (-1553.034) -- 0:03:30
Average standard deviation of split frequencies: 0.013155
696000 -- (-1550.743) (-1556.865) (-1552.137) [-1532.591] * [-1539.929] (-1539.551) (-1555.926) (-1554.149) -- 0:03:30
697000 -- (-1567.962) (-1552.379) [-1537.030] (-1536.594) * [-1533.960] (-1545.787) (-1544.605) (-1569.121) -- 0:03:29
698000 -- (-1562.361) (-1556.447) (-1552.782) [-1540.967] * [-1544.835] (-1547.373) (-1543.601) (-1571.765) -- 0:03:28
699000 -- (-1547.953) [-1545.372] (-1555.173) (-1542.906) * (-1539.060) (-1555.831) (-1545.732) [-1558.015] -- 0:03:27
700000 -- (-1551.329) [-1545.519] (-1553.316) (-1551.795) * [-1544.047] (-1557.284) (-1542.163) (-1551.333) -- 0:03:27
Average standard deviation of split frequencies: 0.013119
701000 -- (-1556.650) (-1562.086) (-1556.263) [-1543.097] * (-1562.049) (-1562.624) [-1551.640] (-1536.499) -- 0:03:26
702000 -- [-1544.444] (-1581.876) (-1546.585) (-1549.213) * (-1552.648) (-1559.065) [-1542.721] (-1548.577) -- 0:03:25
703000 -- (-1546.616) [-1548.479] (-1548.867) (-1549.571) * [-1541.029] (-1548.843) (-1557.868) (-1554.568) -- 0:03:24
704000 -- (-1553.626) (-1538.339) [-1541.651] (-1560.744) * [-1538.116] (-1547.690) (-1550.943) (-1545.109) -- 0:03:23
705000 -- (-1555.586) [-1538.506] (-1536.778) (-1552.881) * (-1547.729) [-1535.032] (-1538.385) (-1538.958) -- 0:03:23
Average standard deviation of split frequencies: 0.013457
706000 -- (-1556.743) [-1538.399] (-1541.041) (-1541.610) * (-1550.245) [-1539.488] (-1550.379) (-1544.488) -- 0:03:22
707000 -- (-1563.123) (-1554.859) (-1528.089) [-1544.455] * (-1554.878) (-1554.256) [-1560.702] (-1557.623) -- 0:03:21
708000 -- (-1564.390) [-1541.850] (-1552.017) (-1543.810) * (-1541.794) (-1550.462) [-1553.641] (-1554.739) -- 0:03:21
709000 -- [-1550.053] (-1568.246) (-1558.774) (-1533.190) * [-1546.377] (-1551.756) (-1551.737) (-1545.665) -- 0:03:20
710000 -- [-1541.569] (-1555.990) (-1553.561) (-1545.131) * (-1539.225) (-1539.425) (-1552.569) [-1546.236] -- 0:03:19
Average standard deviation of split frequencies: 0.014517
711000 -- [-1527.904] (-1548.395) (-1559.889) (-1538.580) * (-1544.120) (-1544.849) (-1558.548) [-1540.987] -- 0:03:18
712000 -- [-1539.340] (-1558.475) (-1576.317) (-1534.230) * (-1545.159) (-1543.447) (-1565.324) [-1542.923] -- 0:03:18
713000 -- (-1538.313) (-1543.558) (-1550.707) [-1542.024] * (-1557.141) (-1548.745) [-1547.393] (-1554.483) -- 0:03:17
714000 -- (-1567.309) (-1538.635) (-1539.873) [-1534.937] * (-1549.719) [-1545.402] (-1553.884) (-1552.739) -- 0:03:16
715000 -- (-1550.922) (-1548.890) [-1533.951] (-1542.424) * [-1546.697] (-1542.531) (-1568.662) (-1550.202) -- 0:03:16
Average standard deviation of split frequencies: 0.014966
716000 -- (-1537.439) [-1550.333] (-1549.040) (-1540.639) * (-1545.327) (-1551.286) [-1534.132] (-1566.214) -- 0:03:15
717000 -- (-1542.420) [-1543.682] (-1538.066) (-1558.190) * (-1543.663) (-1565.653) [-1537.251] (-1548.330) -- 0:03:14
718000 -- (-1546.802) (-1533.257) (-1548.994) [-1544.505] * (-1552.398) (-1536.522) [-1535.677] (-1556.985) -- 0:03:14
719000 -- (-1544.385) (-1545.036) [-1549.931] (-1542.188) * (-1544.046) [-1535.944] (-1546.599) (-1566.889) -- 0:03:13
720000 -- [-1535.318] (-1554.126) (-1550.492) (-1548.452) * (-1549.177) [-1541.917] (-1548.203) (-1571.587) -- 0:03:12
Average standard deviation of split frequencies: 0.014969
721000 -- (-1541.074) (-1551.322) [-1537.208] (-1559.889) * (-1547.971) (-1544.072) [-1538.270] (-1581.534) -- 0:03:11
722000 -- (-1552.976) (-1563.624) [-1542.920] (-1544.987) * (-1544.332) [-1539.083] (-1561.164) (-1569.752) -- 0:03:10
723000 -- [-1538.527] (-1560.336) (-1536.813) (-1552.085) * (-1545.858) (-1541.556) [-1535.595] (-1569.970) -- 0:03:10
724000 -- (-1539.587) (-1556.879) [-1545.419] (-1546.523) * (-1563.694) [-1540.023] (-1550.652) (-1561.098) -- 0:03:09
725000 -- (-1544.627) [-1543.214] (-1550.684) (-1552.116) * (-1551.903) [-1535.463] (-1564.911) (-1554.242) -- 0:03:08
Average standard deviation of split frequencies: 0.015359
726000 -- [-1540.422] (-1549.832) (-1552.340) (-1562.039) * (-1548.047) [-1546.903] (-1542.375) (-1571.985) -- 0:03:07
727000 -- [-1547.129] (-1549.293) (-1555.134) (-1571.731) * (-1535.136) (-1561.663) [-1535.157] (-1562.338) -- 0:03:07
728000 -- (-1554.698) (-1539.635) (-1557.191) [-1545.934] * (-1548.142) (-1556.644) [-1536.302] (-1570.178) -- 0:03:06
729000 -- [-1541.279] (-1557.888) (-1567.370) (-1552.121) * [-1543.899] (-1548.851) (-1530.878) (-1561.896) -- 0:03:05
730000 -- [-1541.007] (-1556.725) (-1577.947) (-1536.214) * (-1561.258) [-1538.775] (-1540.812) (-1557.200) -- 0:03:05
Average standard deviation of split frequencies: 0.015013
731000 -- (-1541.209) (-1556.142) (-1558.975) [-1531.528] * (-1555.970) (-1556.931) [-1548.551] (-1560.038) -- 0:03:04
732000 -- (-1539.941) (-1572.784) (-1548.073) [-1542.714] * [-1547.607] (-1540.784) (-1545.467) (-1547.343) -- 0:03:03
733000 -- (-1539.307) (-1558.887) [-1530.955] (-1561.781) * (-1547.571) [-1543.020] (-1551.755) (-1538.932) -- 0:03:03
734000 -- (-1545.242) (-1542.805) [-1544.184] (-1548.914) * (-1549.912) [-1542.070] (-1545.635) (-1537.720) -- 0:03:02
735000 -- (-1557.039) [-1538.601] (-1542.891) (-1550.461) * [-1538.477] (-1538.740) (-1563.623) (-1547.446) -- 0:03:01
Average standard deviation of split frequencies: 0.015052
736000 -- (-1554.328) (-1554.754) [-1547.033] (-1529.518) * (-1540.886) [-1539.629] (-1559.256) (-1548.344) -- 0:03:00
737000 -- (-1550.314) (-1552.383) (-1539.735) [-1539.073] * [-1540.034] (-1536.391) (-1552.726) (-1567.900) -- 0:03:00
738000 -- (-1544.952) (-1557.654) [-1533.784] (-1533.084) * (-1562.855) (-1536.136) (-1548.630) [-1540.678] -- 0:02:59
739000 -- [-1557.729] (-1548.490) (-1546.242) (-1552.869) * (-1588.036) [-1536.453] (-1544.541) (-1558.231) -- 0:02:58
740000 -- [-1553.455] (-1542.535) (-1546.539) (-1556.243) * (-1566.158) (-1541.867) [-1539.419] (-1546.916) -- 0:02:58
Average standard deviation of split frequencies: 0.014736
741000 -- (-1550.444) [-1542.444] (-1532.867) (-1550.444) * (-1556.814) [-1547.241] (-1558.992) (-1555.365) -- 0:02:57
742000 -- [-1551.506] (-1543.657) (-1535.158) (-1562.481) * (-1551.525) (-1560.160) [-1552.647] (-1551.301) -- 0:02:56
743000 -- (-1536.899) [-1539.005] (-1553.057) (-1556.680) * [-1541.570] (-1561.906) (-1535.290) (-1550.112) -- 0:02:56
744000 -- [-1538.923] (-1544.713) (-1560.455) (-1544.210) * (-1560.271) (-1549.766) (-1545.646) [-1544.711] -- 0:02:55
745000 -- [-1545.909] (-1546.363) (-1561.297) (-1561.053) * (-1553.413) [-1551.950] (-1545.459) (-1545.978) -- 0:02:54
Average standard deviation of split frequencies: 0.014826
746000 -- (-1546.210) [-1549.476] (-1551.538) (-1551.933) * [-1551.983] (-1550.179) (-1544.219) (-1555.681) -- 0:02:53
747000 -- (-1543.871) [-1545.806] (-1563.851) (-1565.527) * [-1531.967] (-1534.251) (-1543.212) (-1549.886) -- 0:02:53
748000 -- (-1528.719) [-1545.759] (-1553.399) (-1545.902) * (-1543.015) (-1532.936) [-1540.665] (-1545.040) -- 0:02:52
749000 -- (-1534.059) (-1555.795) [-1541.179] (-1542.636) * (-1547.691) [-1540.908] (-1542.814) (-1551.333) -- 0:02:51
750000 -- [-1535.319] (-1545.899) (-1551.328) (-1550.485) * (-1547.983) (-1554.032) [-1539.051] (-1552.459) -- 0:02:51
Average standard deviation of split frequencies: 0.014178
751000 -- [-1535.866] (-1542.035) (-1560.580) (-1565.558) * (-1551.113) (-1553.035) (-1533.905) [-1539.061] -- 0:02:50
752000 -- [-1533.476] (-1549.862) (-1553.059) (-1548.925) * (-1545.758) (-1551.272) [-1543.086] (-1549.734) -- 0:02:49
753000 -- (-1535.737) [-1541.499] (-1548.835) (-1547.408) * [-1532.957] (-1545.545) (-1545.120) (-1555.577) -- 0:02:48
754000 -- (-1543.515) (-1542.554) (-1551.896) [-1544.700] * (-1539.286) (-1557.366) [-1554.784] (-1550.308) -- 0:02:48
755000 -- (-1558.119) [-1536.611] (-1548.068) (-1542.112) * (-1533.738) [-1542.785] (-1554.128) (-1554.958) -- 0:02:47
Average standard deviation of split frequencies: 0.014222
756000 -- (-1553.540) [-1536.458] (-1550.364) (-1537.493) * [-1536.692] (-1557.147) (-1541.437) (-1552.214) -- 0:02:47
757000 -- (-1548.177) [-1542.490] (-1546.908) (-1546.779) * (-1551.314) [-1538.760] (-1546.568) (-1551.320) -- 0:02:46
758000 -- (-1536.148) (-1562.648) [-1537.102] (-1547.624) * (-1539.966) [-1554.774] (-1549.212) (-1554.510) -- 0:02:46
759000 -- (-1547.924) (-1544.017) [-1534.567] (-1542.432) * (-1547.260) (-1563.172) [-1540.022] (-1571.554) -- 0:02:45
760000 -- (-1552.786) (-1542.078) (-1559.611) [-1558.257] * [-1540.982] (-1555.986) (-1543.859) (-1553.738) -- 0:02:44
Average standard deviation of split frequencies: 0.013586
761000 -- [-1535.536] (-1534.465) (-1577.503) (-1559.274) * [-1542.621] (-1545.396) (-1560.561) (-1561.364) -- 0:02:44
762000 -- (-1551.905) (-1537.812) (-1569.637) [-1535.204] * (-1537.265) [-1537.730] (-1544.249) (-1567.997) -- 0:02:43
763000 -- (-1565.997) [-1540.341] (-1551.102) (-1536.148) * (-1537.941) [-1538.569] (-1549.062) (-1566.283) -- 0:02:42
764000 -- (-1568.692) [-1545.628] (-1558.603) (-1537.799) * [-1545.013] (-1543.532) (-1548.308) (-1576.918) -- 0:02:42
765000 -- (-1551.471) (-1546.378) (-1539.979) [-1539.486] * (-1560.297) [-1539.900] (-1539.768) (-1558.432) -- 0:02:41
Average standard deviation of split frequencies: 0.013231
766000 -- (-1562.535) (-1557.502) (-1571.700) [-1530.731] * (-1566.344) [-1543.230] (-1546.716) (-1560.198) -- 0:02:40
767000 -- (-1548.855) (-1544.115) (-1569.785) [-1542.157] * (-1552.966) (-1563.796) (-1556.975) [-1540.655] -- 0:02:40
768000 -- [-1545.386] (-1542.436) (-1556.909) (-1540.568) * [-1545.847] (-1557.308) (-1543.819) (-1541.526) -- 0:02:39
769000 -- (-1564.075) (-1546.986) (-1545.270) [-1545.190] * (-1556.168) (-1558.217) [-1547.650] (-1556.830) -- 0:02:39
770000 -- (-1560.200) (-1538.357) (-1551.675) [-1536.732] * [-1543.542] (-1567.829) (-1536.934) (-1557.519) -- 0:02:38
Average standard deviation of split frequencies: 0.012916
771000 -- (-1584.642) (-1540.384) (-1546.214) [-1536.462] * (-1551.605) [-1552.390] (-1548.157) (-1560.538) -- 0:02:38
772000 -- (-1545.299) (-1542.704) (-1543.361) [-1537.956] * (-1559.177) [-1550.271] (-1560.200) (-1567.252) -- 0:02:37
773000 -- [-1540.770] (-1557.809) (-1546.351) (-1548.359) * [-1568.642] (-1556.044) (-1561.776) (-1549.203) -- 0:02:36
774000 -- (-1567.288) (-1552.139) (-1541.671) [-1536.552] * [-1537.560] (-1547.889) (-1560.265) (-1559.072) -- 0:02:36
775000 -- (-1562.852) (-1551.520) [-1541.371] (-1538.206) * (-1547.838) [-1531.944] (-1566.347) (-1536.201) -- 0:02:35
Average standard deviation of split frequencies: 0.012617
776000 -- (-1561.831) (-1543.042) (-1541.681) [-1545.007] * (-1570.446) (-1551.559) [-1540.855] (-1529.361) -- 0:02:35
777000 -- (-1557.715) (-1561.955) (-1545.124) [-1538.097] * (-1565.183) [-1540.785] (-1545.132) (-1538.220) -- 0:02:34
778000 -- (-1563.263) (-1567.912) (-1554.151) [-1545.993] * (-1549.103) (-1550.326) (-1553.771) [-1533.997] -- 0:02:33
779000 -- (-1551.998) (-1558.075) (-1560.702) [-1544.866] * [-1551.452] (-1545.913) (-1577.893) (-1541.076) -- 0:02:33
780000 -- (-1552.272) (-1547.262) (-1572.244) [-1550.816] * (-1545.091) [-1538.971] (-1580.866) (-1553.621) -- 0:02:32
Average standard deviation of split frequencies: 0.012356
781000 -- [-1545.441] (-1550.194) (-1575.813) (-1548.852) * (-1551.549) [-1553.318] (-1562.765) (-1548.571) -- 0:02:31
782000 -- (-1535.069) (-1547.491) (-1554.461) [-1545.294] * (-1576.691) (-1541.650) (-1555.905) [-1541.428] -- 0:02:31
783000 -- (-1545.623) (-1561.344) [-1541.221] (-1548.368) * (-1557.351) [-1535.515] (-1552.818) (-1539.274) -- 0:02:30
784000 -- [-1542.852] (-1565.158) (-1561.211) (-1548.097) * (-1548.021) [-1542.872] (-1549.670) (-1552.008) -- 0:02:30
785000 -- [-1542.463] (-1546.490) (-1580.588) (-1548.092) * (-1539.639) [-1542.752] (-1559.418) (-1556.841) -- 0:02:29
Average standard deviation of split frequencies: 0.011926
786000 -- [-1540.396] (-1548.514) (-1550.499) (-1554.584) * (-1541.284) [-1540.759] (-1563.557) (-1558.933) -- 0:02:28
787000 -- [-1534.954] (-1537.577) (-1560.883) (-1568.736) * (-1543.262) [-1543.109] (-1557.113) (-1542.172) -- 0:02:28
788000 -- (-1531.542) (-1546.113) [-1551.897] (-1556.999) * (-1569.531) (-1551.472) [-1545.555] (-1552.714) -- 0:02:27
789000 -- [-1531.705] (-1563.350) (-1551.540) (-1552.562) * (-1543.783) [-1535.757] (-1549.425) (-1558.602) -- 0:02:26
790000 -- (-1554.649) (-1558.006) [-1542.207] (-1545.837) * (-1563.201) (-1542.034) [-1539.367] (-1547.886) -- 0:02:26
Average standard deviation of split frequencies: 0.011505
791000 -- (-1539.934) [-1536.657] (-1542.447) (-1544.989) * (-1565.826) (-1542.388) (-1544.461) [-1533.675] -- 0:02:25
792000 -- (-1555.124) (-1544.193) (-1551.455) [-1546.451] * (-1553.407) [-1541.856] (-1553.922) (-1538.649) -- 0:02:24
793000 -- (-1552.969) [-1535.868] (-1549.868) (-1552.802) * (-1540.558) [-1548.912] (-1555.868) (-1550.189) -- 0:02:24
794000 -- (-1557.611) [-1538.323] (-1543.776) (-1534.471) * (-1547.582) (-1537.118) (-1552.396) [-1542.125] -- 0:02:23
795000 -- (-1547.068) (-1550.802) (-1547.827) [-1531.727] * (-1557.196) [-1542.913] (-1560.259) (-1554.005) -- 0:02:23
Average standard deviation of split frequencies: 0.010945
796000 -- (-1571.485) [-1542.778] (-1540.587) (-1539.705) * (-1546.782) (-1549.200) [-1537.649] (-1558.929) -- 0:02:22
797000 -- (-1562.707) (-1554.118) (-1562.965) [-1546.718] * (-1551.423) (-1535.403) (-1552.507) [-1538.481] -- 0:02:21
798000 -- (-1550.869) (-1546.475) (-1542.320) [-1543.294] * (-1561.673) (-1536.436) (-1549.740) [-1546.255] -- 0:02:21
799000 -- (-1551.288) [-1537.355] (-1545.771) (-1537.258) * (-1546.338) (-1557.108) (-1562.394) [-1552.981] -- 0:02:20
800000 -- [-1541.323] (-1547.299) (-1543.645) (-1537.543) * (-1547.544) [-1543.488] (-1543.302) (-1545.897) -- 0:02:20
Average standard deviation of split frequencies: 0.011078
801000 -- (-1534.427) (-1557.118) (-1555.532) [-1540.008] * [-1536.461] (-1540.319) (-1556.393) (-1557.738) -- 0:02:19
802000 -- [-1539.656] (-1564.632) (-1538.950) (-1551.776) * (-1552.720) (-1544.798) [-1550.213] (-1557.154) -- 0:02:18
803000 -- (-1561.020) (-1557.667) (-1544.566) [-1537.144] * [-1532.428] (-1540.409) (-1532.906) (-1558.427) -- 0:02:18
804000 -- (-1553.786) [-1548.565] (-1541.131) (-1541.924) * [-1539.389] (-1554.582) (-1534.443) (-1553.704) -- 0:02:17
805000 -- (-1560.125) (-1547.093) [-1539.914] (-1557.999) * [-1537.885] (-1559.998) (-1536.523) (-1535.837) -- 0:02:16
Average standard deviation of split frequencies: 0.011134
806000 -- (-1551.617) (-1541.282) [-1535.137] (-1563.061) * (-1549.989) [-1545.526] (-1549.577) (-1543.662) -- 0:02:15
807000 -- (-1552.754) [-1542.727] (-1541.183) (-1569.055) * [-1542.918] (-1548.978) (-1560.897) (-1549.102) -- 0:02:15
808000 -- (-1548.061) (-1554.733) [-1540.734] (-1553.245) * (-1546.842) (-1550.883) [-1552.397] (-1550.067) -- 0:02:14
809000 -- (-1540.200) (-1549.109) [-1543.240] (-1551.716) * [-1541.422] (-1550.514) (-1551.707) (-1559.226) -- 0:02:14
810000 -- (-1568.116) (-1540.221) [-1538.535] (-1563.520) * (-1545.395) (-1539.457) (-1536.452) [-1548.336] -- 0:02:13
Average standard deviation of split frequencies: 0.011005
811000 -- (-1564.205) (-1554.497) [-1543.522] (-1559.882) * (-1535.274) [-1541.417] (-1543.250) (-1543.742) -- 0:02:12
812000 -- (-1550.772) [-1542.203] (-1533.338) (-1572.738) * (-1553.345) (-1551.794) (-1536.484) [-1548.756] -- 0:02:12
813000 -- (-1539.252) (-1544.969) [-1533.621] (-1565.251) * [-1550.050] (-1577.782) (-1555.289) (-1560.668) -- 0:02:11
814000 -- (-1543.502) [-1534.720] (-1543.257) (-1552.654) * (-1543.281) (-1551.797) [-1541.960] (-1552.567) -- 0:02:10
815000 -- [-1534.540] (-1531.473) (-1561.071) (-1566.761) * (-1570.688) (-1561.193) (-1546.548) [-1547.289] -- 0:02:10
Average standard deviation of split frequencies: 0.010270
816000 -- (-1549.410) [-1534.464] (-1553.298) (-1556.256) * (-1558.232) (-1563.169) [-1543.950] (-1555.786) -- 0:02:09
817000 -- (-1561.828) [-1535.810] (-1555.021) (-1560.850) * (-1551.398) (-1556.264) [-1537.323] (-1541.646) -- 0:02:09
818000 -- (-1550.710) (-1548.183) [-1544.129] (-1550.491) * (-1554.078) (-1559.631) [-1540.094] (-1548.036) -- 0:02:08
819000 -- (-1556.396) (-1545.816) (-1543.717) [-1543.840] * (-1587.053) (-1546.820) [-1536.378] (-1546.085) -- 0:02:07
820000 -- (-1546.365) (-1559.020) [-1554.398] (-1556.439) * (-1571.763) [-1546.290] (-1548.071) (-1543.600) -- 0:02:07
Average standard deviation of split frequencies: 0.010169
821000 -- [-1542.567] (-1557.835) (-1534.258) (-1563.670) * (-1551.307) (-1559.950) (-1561.423) [-1542.764] -- 0:02:06
822000 -- (-1544.494) (-1533.056) [-1542.061] (-1558.068) * [-1554.121] (-1544.788) (-1582.923) (-1556.542) -- 0:02:05
823000 -- (-1544.634) (-1552.916) [-1544.354] (-1549.399) * (-1560.027) [-1541.793] (-1566.121) (-1552.938) -- 0:02:05
824000 -- (-1548.789) (-1558.073) [-1538.893] (-1561.594) * (-1557.126) (-1552.073) (-1553.390) [-1550.868] -- 0:02:04
825000 -- (-1546.363) (-1556.842) [-1543.602] (-1551.439) * (-1568.508) (-1539.628) (-1556.841) [-1544.705] -- 0:02:03
Average standard deviation of split frequencies: 0.010717
826000 -- (-1550.244) [-1548.269] (-1549.824) (-1565.376) * (-1543.472) [-1537.942] (-1547.379) (-1560.273) -- 0:02:03
827000 -- (-1548.051) (-1569.687) [-1534.842] (-1543.086) * [-1543.533] (-1555.221) (-1559.003) (-1570.235) -- 0:02:02
828000 -- (-1540.770) (-1539.114) [-1542.871] (-1562.645) * (-1529.642) [-1539.169] (-1565.936) (-1543.295) -- 0:02:01
829000 -- (-1546.687) [-1548.896] (-1548.239) (-1558.293) * (-1540.907) [-1547.234] (-1552.267) (-1536.693) -- 0:02:01
830000 -- [-1537.370] (-1552.507) (-1547.370) (-1559.588) * (-1539.197) [-1541.572] (-1548.415) (-1551.015) -- 0:02:00
Average standard deviation of split frequencies: 0.010909
831000 -- (-1551.081) (-1561.749) (-1546.866) [-1540.747] * (-1551.481) (-1551.286) [-1539.606] (-1566.348) -- 0:01:59
832000 -- (-1560.549) (-1546.433) (-1541.195) [-1538.560] * (-1553.858) (-1559.042) (-1536.991) [-1547.210] -- 0:01:59
833000 -- [-1541.347] (-1557.139) (-1539.413) (-1550.700) * (-1541.782) (-1557.784) (-1560.199) [-1539.152] -- 0:01:58
834000 -- (-1556.195) (-1561.989) [-1537.315] (-1539.689) * [-1554.220] (-1556.556) (-1569.844) (-1534.411) -- 0:01:57
835000 -- [-1539.857] (-1543.967) (-1543.775) (-1548.042) * [-1536.199] (-1562.371) (-1545.131) (-1535.103) -- 0:01:57
Average standard deviation of split frequencies: 0.011194
836000 -- (-1543.949) [-1544.677] (-1538.364) (-1560.011) * (-1548.625) (-1564.519) [-1539.024] (-1552.400) -- 0:01:56
837000 -- (-1551.896) (-1540.402) (-1551.480) [-1548.264] * (-1544.590) (-1545.658) (-1541.519) [-1541.113] -- 0:01:55
838000 -- (-1560.720) [-1545.808] (-1547.225) (-1543.594) * (-1538.519) (-1563.573) [-1540.996] (-1542.703) -- 0:01:55
839000 -- (-1550.584) (-1553.705) [-1541.163] (-1543.936) * (-1561.650) [-1542.991] (-1548.249) (-1552.279) -- 0:01:54
840000 -- (-1548.224) (-1569.779) [-1536.552] (-1544.758) * (-1573.586) (-1550.384) [-1546.034] (-1556.126) -- 0:01:53
Average standard deviation of split frequencies: 0.011630
841000 -- (-1550.648) [-1543.638] (-1537.082) (-1542.776) * (-1564.044) (-1560.902) (-1575.030) [-1550.043] -- 0:01:53
842000 -- (-1557.137) [-1530.894] (-1545.579) (-1535.126) * (-1549.399) (-1542.847) [-1548.891] (-1569.307) -- 0:01:52
843000 -- [-1544.864] (-1583.586) (-1550.357) (-1541.509) * [-1539.717] (-1557.565) (-1554.247) (-1554.047) -- 0:01:51
844000 -- (-1541.866) [-1541.821] (-1563.268) (-1545.439) * [-1537.513] (-1544.030) (-1567.225) (-1558.577) -- 0:01:51
845000 -- [-1546.426] (-1558.806) (-1558.928) (-1546.703) * (-1547.139) (-1544.426) (-1569.512) [-1546.000] -- 0:01:50
Average standard deviation of split frequencies: 0.011846
846000 -- (-1550.626) (-1551.410) (-1562.261) [-1542.615] * (-1544.699) [-1543.320] (-1574.152) (-1550.471) -- 0:01:49
847000 -- [-1542.064] (-1545.035) (-1545.125) (-1566.599) * (-1546.996) [-1556.505] (-1545.826) (-1555.209) -- 0:01:49
848000 -- [-1538.062] (-1540.849) (-1554.913) (-1566.647) * (-1556.219) (-1542.825) [-1546.119] (-1551.437) -- 0:01:48
849000 -- [-1538.252] (-1542.747) (-1559.446) (-1555.215) * (-1575.631) [-1542.488] (-1549.572) (-1555.326) -- 0:01:47
850000 -- [-1532.760] (-1542.721) (-1574.127) (-1567.817) * (-1549.225) (-1540.021) (-1548.066) [-1536.134] -- 0:01:46
Average standard deviation of split frequencies: 0.012089
851000 -- [-1538.265] (-1545.352) (-1564.986) (-1554.196) * (-1545.665) (-1543.502) (-1559.461) [-1541.108] -- 0:01:46
852000 -- (-1557.703) (-1547.118) [-1549.113] (-1547.060) * [-1541.546] (-1555.858) (-1560.759) (-1546.423) -- 0:01:45
853000 -- [-1553.483] (-1550.455) (-1538.981) (-1544.205) * (-1543.372) (-1552.179) (-1544.325) [-1546.783] -- 0:01:44
854000 -- (-1541.083) (-1562.259) [-1533.138] (-1546.181) * (-1542.621) (-1549.334) (-1556.105) [-1541.890] -- 0:01:44
855000 -- [-1530.589] (-1556.056) (-1538.542) (-1551.837) * (-1551.549) (-1541.317) (-1551.053) [-1534.492] -- 0:01:43
Average standard deviation of split frequencies: 0.012156
856000 -- (-1543.954) (-1538.220) [-1542.313] (-1537.861) * (-1565.704) (-1547.048) (-1563.752) [-1538.039] -- 0:01:42
857000 -- (-1544.763) [-1542.529] (-1549.835) (-1549.791) * (-1565.313) [-1541.114] (-1545.408) (-1551.677) -- 0:01:41
858000 -- (-1549.289) [-1527.072] (-1555.468) (-1544.163) * (-1554.377) [-1542.811] (-1569.819) (-1552.446) -- 0:01:41
859000 -- (-1546.216) [-1537.736] (-1547.848) (-1574.728) * (-1545.536) (-1555.927) (-1581.553) [-1543.558] -- 0:01:40
860000 -- (-1563.214) [-1536.766] (-1539.585) (-1566.610) * (-1555.764) (-1554.870) (-1546.592) [-1537.567] -- 0:01:39
Average standard deviation of split frequencies: 0.012354
861000 -- (-1557.667) [-1543.726] (-1546.643) (-1541.302) * (-1575.566) (-1544.163) (-1546.187) [-1533.717] -- 0:01:38
862000 -- [-1550.626] (-1549.914) (-1547.956) (-1548.397) * (-1564.833) (-1563.974) (-1536.502) [-1539.324] -- 0:01:38
863000 -- (-1569.532) (-1550.342) [-1549.631] (-1556.790) * [-1544.427] (-1568.514) (-1550.393) (-1556.394) -- 0:01:37
864000 -- (-1561.223) [-1547.857] (-1550.151) (-1542.096) * [-1537.321] (-1566.523) (-1552.707) (-1550.056) -- 0:01:36
865000 -- (-1557.356) (-1539.952) (-1553.410) [-1544.855] * (-1542.337) (-1566.035) (-1549.899) [-1552.188] -- 0:01:35
Average standard deviation of split frequencies: 0.012218
866000 -- (-1553.551) [-1546.161] (-1564.036) (-1557.551) * (-1534.606) (-1577.454) (-1551.855) [-1552.335] -- 0:01:35
867000 -- (-1564.424) [-1541.236] (-1559.003) (-1540.128) * (-1558.528) [-1559.013] (-1550.331) (-1564.819) -- 0:01:34
868000 -- [-1541.024] (-1548.302) (-1555.715) (-1543.295) * (-1540.963) (-1553.824) [-1538.087] (-1559.385) -- 0:01:33
869000 -- [-1538.529] (-1549.164) (-1546.763) (-1548.551) * [-1541.607] (-1544.035) (-1545.469) (-1528.919) -- 0:01:33
870000 -- (-1543.766) [-1549.732] (-1549.621) (-1543.766) * (-1562.690) (-1551.948) (-1550.968) [-1539.176] -- 0:01:32
Average standard deviation of split frequencies: 0.011811
871000 -- (-1559.159) [-1553.694] (-1556.703) (-1560.579) * (-1547.225) (-1556.196) [-1558.021] (-1547.690) -- 0:01:31
872000 -- (-1562.153) [-1544.012] (-1571.802) (-1563.188) * (-1543.383) (-1553.657) (-1547.641) [-1540.250] -- 0:01:31
873000 -- (-1566.912) [-1539.022] (-1542.051) (-1551.364) * (-1550.002) (-1565.038) (-1559.152) [-1542.999] -- 0:01:30
874000 -- (-1557.483) [-1541.069] (-1567.863) (-1550.470) * (-1546.943) (-1579.604) (-1548.242) [-1542.011] -- 0:01:29
875000 -- (-1566.903) [-1549.319] (-1552.123) (-1554.665) * (-1545.062) (-1544.203) [-1537.726] (-1540.904) -- 0:01:28
Average standard deviation of split frequencies: 0.011879
876000 -- (-1555.453) (-1549.398) (-1553.522) [-1535.541] * (-1577.613) (-1552.574) (-1548.057) [-1531.919] -- 0:01:28
877000 -- (-1546.548) (-1555.096) (-1547.504) [-1533.367] * (-1558.854) (-1545.982) [-1541.482] (-1541.353) -- 0:01:27
878000 -- (-1557.076) (-1550.646) (-1546.933) [-1543.105] * (-1541.784) (-1554.868) (-1545.909) [-1536.259] -- 0:01:26
879000 -- (-1560.499) (-1542.992) (-1559.734) [-1547.231] * (-1545.200) (-1561.135) [-1549.533] (-1560.216) -- 0:01:25
880000 -- (-1553.025) [-1539.536] (-1557.055) (-1559.426) * [-1533.364] (-1558.218) (-1539.269) (-1545.626) -- 0:01:25
Average standard deviation of split frequencies: 0.012014
881000 -- (-1546.178) [-1542.172] (-1563.185) (-1546.088) * (-1538.318) (-1553.552) [-1539.894] (-1557.526) -- 0:01:24
882000 -- [-1547.745] (-1564.782) (-1562.172) (-1544.859) * (-1546.891) (-1539.529) [-1543.429] (-1558.322) -- 0:01:23
883000 -- [-1552.298] (-1549.005) (-1565.480) (-1540.722) * [-1549.063] (-1544.797) (-1548.987) (-1575.929) -- 0:01:22
884000 -- [-1543.081] (-1547.873) (-1565.774) (-1550.234) * (-1549.840) (-1555.759) (-1549.579) [-1543.101] -- 0:01:22
885000 -- [-1545.628] (-1545.447) (-1549.938) (-1549.560) * (-1540.851) (-1548.534) (-1571.809) [-1535.647] -- 0:01:21
Average standard deviation of split frequencies: 0.011705
886000 -- (-1559.934) [-1541.267] (-1553.824) (-1539.837) * (-1557.344) [-1548.017] (-1580.937) (-1550.523) -- 0:01:20
887000 -- (-1565.002) [-1530.995] (-1537.261) (-1553.254) * (-1571.119) (-1551.480) (-1541.834) [-1544.109] -- 0:01:20
888000 -- [-1547.461] (-1537.214) (-1553.852) (-1553.719) * (-1568.430) [-1544.630] (-1550.026) (-1545.891) -- 0:01:19
889000 -- [-1545.468] (-1536.793) (-1563.588) (-1552.110) * (-1541.764) [-1542.605] (-1539.688) (-1544.783) -- 0:01:18
890000 -- (-1559.440) (-1564.230) [-1547.805] (-1548.805) * (-1569.738) [-1541.899] (-1557.810) (-1534.786) -- 0:01:17
Average standard deviation of split frequencies: 0.011566
891000 -- (-1556.581) (-1552.503) [-1544.637] (-1556.990) * (-1562.020) [-1539.181] (-1541.755) (-1535.278) -- 0:01:17
892000 -- (-1559.377) (-1549.758) (-1559.997) [-1538.152] * (-1577.019) [-1539.323] (-1556.374) (-1545.457) -- 0:01:16
893000 -- (-1551.496) (-1549.564) (-1559.881) [-1544.705] * (-1577.534) [-1543.209] (-1548.059) (-1560.900) -- 0:01:15
894000 -- (-1544.470) [-1542.389] (-1552.192) (-1536.932) * (-1547.840) (-1546.989) [-1540.511] (-1560.176) -- 0:01:15
895000 -- (-1543.770) (-1544.105) [-1539.887] (-1543.289) * (-1545.815) (-1542.825) [-1555.681] (-1550.451) -- 0:01:14
Average standard deviation of split frequencies: 0.011750
896000 -- (-1543.605) (-1547.423) [-1538.153] (-1546.165) * (-1546.384) (-1538.425) (-1545.598) [-1539.542] -- 0:01:13
897000 -- (-1568.393) [-1546.375] (-1536.493) (-1554.995) * (-1564.772) (-1546.350) [-1536.616] (-1559.784) -- 0:01:12
898000 -- (-1542.794) (-1559.261) (-1550.566) [-1535.713] * (-1559.772) (-1541.931) (-1550.560) [-1536.766] -- 0:01:12
899000 -- (-1544.184) (-1555.832) (-1546.788) [-1541.245] * (-1555.659) (-1558.685) (-1552.858) [-1545.092] -- 0:01:11
900000 -- [-1531.768] (-1548.445) (-1544.901) (-1541.917) * (-1559.618) (-1549.641) [-1539.667] (-1544.170) -- 0:01:10
Average standard deviation of split frequencies: 0.011573
901000 -- [-1540.310] (-1547.160) (-1563.254) (-1543.719) * [-1570.266] (-1544.430) (-1552.749) (-1557.574) -- 0:01:09
902000 -- (-1562.916) (-1548.957) (-1552.569) [-1542.524] * (-1576.962) (-1541.757) (-1541.648) [-1539.834] -- 0:01:09
903000 -- [-1558.968] (-1560.177) (-1543.122) (-1543.122) * (-1546.759) (-1542.898) (-1553.910) [-1538.048] -- 0:01:08
904000 -- (-1560.521) [-1534.234] (-1543.220) (-1553.165) * (-1552.355) [-1540.053] (-1539.853) (-1544.176) -- 0:01:07
905000 -- (-1575.037) (-1541.454) (-1550.084) [-1550.892] * (-1549.019) (-1555.732) [-1537.404] (-1550.556) -- 0:01:07
Average standard deviation of split frequencies: 0.011697
906000 -- (-1573.750) [-1537.626] (-1547.522) (-1566.438) * (-1556.976) (-1554.459) [-1548.198] (-1545.016) -- 0:01:06
907000 -- (-1557.244) (-1548.920) [-1544.008] (-1545.944) * (-1541.925) (-1558.772) (-1542.352) [-1537.201] -- 0:01:05
908000 -- (-1563.640) (-1572.262) [-1546.069] (-1546.930) * (-1535.463) (-1546.567) [-1544.485] (-1548.686) -- 0:01:05
909000 -- [-1543.869] (-1570.605) (-1553.156) (-1545.635) * (-1552.630) [-1544.718] (-1544.259) (-1569.168) -- 0:01:04
910000 -- (-1547.886) (-1553.894) (-1556.219) [-1547.896] * (-1550.095) (-1557.072) (-1547.354) [-1550.275] -- 0:01:03
Average standard deviation of split frequencies: 0.011081
911000 -- (-1565.040) [-1544.531] (-1544.246) (-1536.393) * (-1546.673) [-1552.568] (-1559.890) (-1546.719) -- 0:01:02
912000 -- (-1551.914) (-1560.113) [-1543.334] (-1545.548) * (-1543.050) (-1560.526) (-1544.503) [-1543.478] -- 0:01:02
913000 -- (-1568.493) [-1544.546] (-1551.831) (-1551.084) * [-1548.090] (-1553.234) (-1555.321) (-1541.542) -- 0:01:01
914000 -- [-1547.320] (-1550.853) (-1545.804) (-1558.402) * (-1547.598) (-1563.298) (-1551.709) [-1537.583] -- 0:01:00
915000 -- (-1549.339) (-1560.710) [-1543.143] (-1551.015) * (-1537.316) (-1586.222) (-1546.846) [-1542.590] -- 0:01:00
Average standard deviation of split frequencies: 0.011150
916000 -- [-1539.332] (-1539.772) (-1544.298) (-1547.679) * [-1545.521] (-1555.336) (-1558.871) (-1558.153) -- 0:00:59
917000 -- (-1546.669) (-1556.468) (-1550.690) [-1537.412] * (-1546.627) (-1551.827) (-1555.395) [-1544.077] -- 0:00:58
918000 -- (-1537.883) (-1553.314) [-1544.150] (-1554.982) * (-1547.125) (-1561.009) (-1561.561) [-1541.353] -- 0:00:57
919000 -- (-1548.765) [-1548.528] (-1547.720) (-1548.302) * (-1546.781) [-1541.339] (-1556.714) (-1558.267) -- 0:00:57
920000 -- (-1550.258) (-1545.002) [-1544.144] (-1543.845) * (-1556.547) (-1555.839) [-1542.672] (-1550.683) -- 0:00:56
Average standard deviation of split frequencies: 0.010582
921000 -- (-1568.649) (-1581.088) [-1536.280] (-1550.140) * (-1543.972) (-1558.218) [-1540.064] (-1559.410) -- 0:00:55
922000 -- (-1550.689) [-1543.222] (-1546.535) (-1549.531) * (-1550.099) (-1553.932) (-1565.349) [-1546.956] -- 0:00:55
923000 -- (-1578.441) (-1550.166) (-1544.129) [-1545.271] * (-1565.399) (-1561.439) [-1544.520] (-1548.972) -- 0:00:54
924000 -- (-1554.600) (-1537.831) [-1542.066] (-1556.224) * (-1552.427) (-1566.840) [-1548.971] (-1543.278) -- 0:00:53
925000 -- (-1542.590) (-1538.332) (-1544.912) [-1557.312] * [-1536.473] (-1552.226) (-1558.125) (-1551.652) -- 0:00:52
Average standard deviation of split frequencies: 0.010747
926000 -- (-1549.413) [-1535.163] (-1546.023) (-1573.123) * (-1546.767) (-1556.502) (-1541.650) [-1545.964] -- 0:00:52
927000 -- [-1535.328] (-1535.695) (-1554.929) (-1565.579) * [-1535.831] (-1564.851) (-1548.961) (-1548.745) -- 0:00:51
928000 -- (-1549.488) (-1533.792) [-1549.302] (-1577.893) * (-1552.795) (-1562.290) [-1544.431] (-1549.798) -- 0:00:50
929000 -- (-1554.687) [-1535.813] (-1545.627) (-1586.499) * [-1543.627] (-1564.903) (-1544.585) (-1550.643) -- 0:00:50
930000 -- (-1540.835) [-1543.213] (-1551.737) (-1560.131) * (-1546.188) (-1564.624) [-1536.584] (-1537.214) -- 0:00:49
Average standard deviation of split frequencies: 0.010862
931000 -- (-1554.484) (-1550.638) [-1544.395] (-1556.903) * (-1551.229) (-1571.842) (-1542.174) [-1545.083] -- 0:00:48
932000 -- (-1549.889) (-1539.176) [-1539.979] (-1554.163) * (-1544.392) (-1546.008) (-1543.616) [-1546.304] -- 0:00:47
933000 -- (-1550.193) [-1535.172] (-1548.103) (-1555.514) * (-1540.306) [-1543.578] (-1573.385) (-1543.141) -- 0:00:47
934000 -- (-1569.131) (-1548.667) [-1542.794] (-1551.391) * (-1540.177) [-1542.154] (-1560.174) (-1544.629) -- 0:00:46
935000 -- (-1546.473) (-1557.279) [-1542.874] (-1548.343) * [-1540.719] (-1551.784) (-1570.994) (-1548.195) -- 0:00:45
Average standard deviation of split frequencies: 0.010726
936000 -- (-1547.842) (-1545.222) [-1534.370] (-1559.860) * (-1549.418) (-1539.092) (-1562.076) [-1547.818] -- 0:00:45
937000 -- (-1540.065) [-1549.655] (-1535.796) (-1563.775) * (-1552.035) [-1535.620] (-1574.152) (-1557.712) -- 0:00:44
938000 -- [-1549.827] (-1539.466) (-1542.948) (-1556.761) * (-1551.049) [-1550.067] (-1559.381) (-1546.172) -- 0:00:43
939000 -- (-1552.395) [-1543.466] (-1542.161) (-1557.098) * [-1534.093] (-1544.567) (-1545.188) (-1542.696) -- 0:00:42
940000 -- (-1551.758) [-1535.901] (-1548.944) (-1543.042) * (-1551.939) (-1547.267) [-1543.072] (-1551.081) -- 0:00:42
Average standard deviation of split frequencies: 0.011044
941000 -- (-1545.144) (-1544.022) [-1535.912] (-1566.444) * (-1558.785) (-1546.741) (-1550.980) [-1544.481] -- 0:00:41
942000 -- (-1567.689) (-1545.769) [-1531.779] (-1541.159) * (-1555.567) (-1550.699) (-1551.436) [-1540.504] -- 0:00:40
943000 -- (-1567.444) (-1541.394) [-1534.060] (-1545.531) * [-1542.160] (-1552.365) (-1548.767) (-1559.964) -- 0:00:40
944000 -- [-1547.232] (-1537.666) (-1543.804) (-1546.541) * (-1537.922) [-1543.447] (-1557.105) (-1560.714) -- 0:00:39
945000 -- (-1556.292) (-1560.936) (-1547.911) [-1534.380] * [-1543.019] (-1557.399) (-1540.484) (-1562.649) -- 0:00:38
Average standard deviation of split frequencies: 0.011387
946000 -- (-1559.877) [-1544.311] (-1546.386) (-1541.315) * (-1543.574) (-1559.569) [-1546.435] (-1554.976) -- 0:00:38
947000 -- (-1553.964) [-1538.186] (-1559.646) (-1542.814) * [-1535.761] (-1547.765) (-1546.879) (-1555.239) -- 0:00:37
948000 -- [-1542.386] (-1540.832) (-1564.578) (-1542.645) * [-1532.972] (-1542.083) (-1544.521) (-1567.559) -- 0:00:36
949000 -- (-1557.700) (-1533.196) (-1559.570) [-1548.004] * (-1553.148) [-1550.314] (-1545.882) (-1557.152) -- 0:00:35
950000 -- (-1547.797) [-1541.884] (-1568.196) (-1543.418) * [-1548.426] (-1557.157) (-1554.126) (-1552.928) -- 0:00:35
Average standard deviation of split frequencies: 0.011625
951000 -- (-1551.228) (-1551.619) (-1576.764) [-1551.072] * (-1532.370) (-1557.325) [-1544.627] (-1564.938) -- 0:00:34
952000 -- [-1541.021] (-1536.753) (-1565.803) (-1553.374) * (-1553.649) (-1552.051) [-1541.597] (-1539.542) -- 0:00:33
953000 -- (-1551.201) [-1546.304] (-1553.694) (-1566.596) * [-1543.114] (-1559.777) (-1561.402) (-1558.375) -- 0:00:33
954000 -- (-1554.923) [-1552.909] (-1551.716) (-1571.773) * [-1539.375] (-1553.318) (-1550.785) (-1547.408) -- 0:00:32
955000 -- [-1538.971] (-1559.515) (-1551.672) (-1542.616) * (-1553.664) [-1546.443] (-1556.897) (-1535.991) -- 0:00:31
Average standard deviation of split frequencies: 0.011615
956000 -- (-1553.241) [-1545.513] (-1560.835) (-1550.947) * (-1564.345) (-1546.939) [-1548.363] (-1543.983) -- 0:00:30
957000 -- (-1549.904) (-1567.790) (-1564.212) [-1546.078] * (-1561.919) (-1549.359) (-1542.401) [-1541.062] -- 0:00:30
958000 -- [-1544.189] (-1560.596) (-1566.493) (-1548.423) * (-1546.127) (-1549.909) (-1541.206) [-1551.060] -- 0:00:29
959000 -- [-1539.251] (-1552.009) (-1546.455) (-1550.869) * (-1545.686) (-1542.478) (-1548.500) [-1547.297] -- 0:00:28
960000 -- (-1559.654) (-1562.687) [-1539.974] (-1548.464) * (-1543.985) (-1574.613) [-1542.036] (-1542.520) -- 0:00:28
Average standard deviation of split frequencies: 0.011522
961000 -- (-1557.015) (-1560.209) (-1546.132) [-1548.637] * (-1544.384) (-1561.262) [-1542.586] (-1550.756) -- 0:00:27
962000 -- (-1558.880) [-1547.484] (-1538.434) (-1566.033) * (-1562.108) (-1549.332) [-1536.884] (-1544.264) -- 0:00:26
963000 -- (-1551.265) [-1546.709] (-1550.081) (-1553.785) * (-1564.708) (-1543.398) (-1562.532) [-1538.081] -- 0:00:25
964000 -- (-1552.176) [-1538.669] (-1551.595) (-1544.483) * (-1564.302) [-1542.830] (-1560.220) (-1544.079) -- 0:00:25
965000 -- [-1535.238] (-1542.231) (-1580.766) (-1537.846) * [-1545.937] (-1541.285) (-1549.371) (-1545.904) -- 0:00:24
Average standard deviation of split frequencies: 0.011170
966000 -- (-1542.716) (-1547.648) (-1566.335) [-1538.700] * [-1549.075] (-1542.518) (-1564.358) (-1541.586) -- 0:00:23
967000 -- (-1539.857) (-1561.610) (-1556.213) [-1537.699] * (-1555.040) [-1547.502] (-1567.095) (-1557.892) -- 0:00:23
968000 -- (-1546.619) (-1546.434) (-1543.659) [-1542.356] * [-1542.735] (-1544.619) (-1543.776) (-1548.213) -- 0:00:22
969000 -- (-1541.391) [-1543.621] (-1573.774) (-1549.552) * (-1537.721) (-1553.992) (-1548.793) [-1535.229] -- 0:00:21
970000 -- (-1546.407) [-1535.943] (-1555.798) (-1548.093) * (-1542.571) [-1551.016] (-1553.732) (-1550.477) -- 0:00:21
Average standard deviation of split frequencies: 0.011386
971000 -- (-1549.958) (-1560.704) (-1549.075) [-1549.867] * (-1545.301) (-1557.917) [-1537.667] (-1558.798) -- 0:00:20
972000 -- (-1557.537) (-1542.673) (-1547.157) [-1542.697] * [-1543.086] (-1556.540) (-1545.557) (-1565.033) -- 0:00:19
973000 -- (-1565.682) (-1540.862) [-1542.529] (-1544.607) * [-1535.668] (-1542.955) (-1546.680) (-1554.994) -- 0:00:18
974000 -- (-1554.528) (-1548.402) [-1536.279] (-1552.434) * [-1542.863] (-1553.489) (-1544.195) (-1551.997) -- 0:00:18
975000 -- (-1550.477) (-1561.663) [-1544.029] (-1547.632) * (-1547.263) (-1550.134) [-1541.378] (-1556.928) -- 0:00:17
Average standard deviation of split frequencies: 0.011180
976000 -- (-1552.929) [-1543.728] (-1548.596) (-1539.155) * (-1535.117) [-1554.513] (-1546.941) (-1574.282) -- 0:00:16
977000 -- (-1546.160) (-1550.905) (-1564.269) [-1543.972] * [-1546.304] (-1544.376) (-1541.234) (-1560.821) -- 0:00:16
978000 -- (-1553.116) (-1545.502) [-1542.399] (-1547.627) * [-1532.220] (-1548.166) (-1586.731) (-1555.334) -- 0:00:15
979000 -- (-1537.310) (-1551.880) [-1545.086] (-1539.384) * (-1531.653) [-1545.494] (-1579.402) (-1542.937) -- 0:00:14
980000 -- [-1546.696] (-1561.007) (-1544.279) (-1536.534) * (-1546.276) (-1556.608) (-1544.845) [-1540.447] -- 0:00:14
Average standard deviation of split frequencies: 0.011483
981000 -- [-1532.909] (-1547.048) (-1561.591) (-1554.612) * (-1546.115) (-1578.580) [-1545.205] (-1553.290) -- 0:00:13
982000 -- (-1540.543) (-1544.104) (-1570.051) [-1542.878] * (-1548.264) (-1569.365) [-1538.603] (-1535.865) -- 0:00:12
983000 -- (-1538.946) [-1537.359] (-1544.861) (-1557.765) * (-1554.292) (-1554.982) [-1535.713] (-1541.433) -- 0:00:11
984000 -- [-1541.882] (-1546.588) (-1564.511) (-1536.176) * (-1558.452) (-1550.271) (-1541.024) [-1535.169] -- 0:00:11
985000 -- [-1534.693] (-1556.603) (-1548.825) (-1540.507) * [-1549.462] (-1555.170) (-1535.597) (-1539.793) -- 0:00:10
Average standard deviation of split frequencies: 0.011669
986000 -- (-1549.388) (-1552.825) [-1553.520] (-1539.960) * (-1542.286) (-1575.619) (-1550.567) [-1551.122] -- 0:00:09
987000 -- (-1555.805) [-1535.381] (-1553.456) (-1539.488) * (-1562.900) (-1543.879) (-1546.952) [-1540.661] -- 0:00:09
988000 -- [-1537.349] (-1542.059) (-1558.936) (-1543.487) * (-1550.190) (-1561.487) [-1537.437] (-1543.321) -- 0:00:08
989000 -- (-1538.129) (-1559.559) (-1551.553) [-1539.976] * (-1556.136) (-1552.292) (-1541.146) [-1539.007] -- 0:00:07
990000 -- (-1543.132) (-1545.078) [-1546.395] (-1551.909) * (-1572.673) (-1559.055) [-1542.872] (-1533.817) -- 0:00:06
Average standard deviation of split frequencies: 0.011491
991000 -- [-1544.743] (-1545.554) (-1547.590) (-1558.894) * (-1560.392) [-1554.288] (-1556.146) (-1536.910) -- 0:00:06
992000 -- [-1537.576] (-1543.361) (-1548.804) (-1547.336) * (-1545.945) (-1559.804) (-1554.315) [-1536.694] -- 0:00:05
993000 -- [-1548.133] (-1563.599) (-1550.071) (-1538.355) * (-1553.903) (-1545.581) (-1540.085) [-1547.650] -- 0:00:04
994000 -- [-1532.068] (-1549.645) (-1544.968) (-1556.967) * [-1552.281] (-1541.893) (-1545.727) (-1565.197) -- 0:00:04
995000 -- (-1546.919) (-1550.507) (-1545.912) [-1534.930] * (-1560.291) (-1536.634) [-1534.828] (-1545.366) -- 0:00:03
Average standard deviation of split frequencies: 0.011207
996000 -- [-1540.640] (-1562.371) (-1547.196) (-1559.138) * (-1553.297) (-1537.661) (-1555.316) [-1542.959] -- 0:00:02
997000 -- (-1538.881) [-1544.845] (-1553.080) (-1549.431) * [-1544.865] (-1562.620) (-1545.646) (-1543.387) -- 0:00:02
998000 -- (-1541.429) (-1550.537) [-1557.076] (-1554.880) * [-1539.044] (-1543.153) (-1555.912) (-1542.313) -- 0:00:01
999000 -- (-1538.995) (-1548.321) (-1558.808) [-1544.175] * [-1545.219] (-1537.227) (-1555.174) (-1554.138) -- 0:00:00
1000000 -- (-1538.726) (-1540.806) (-1567.063) [-1547.964] * (-1546.415) [-1533.443] (-1541.395) (-1552.256) -- 0:00:00
Average standard deviation of split frequencies: 0.011341
Analysis completed in 11 mins 38 seconds
Analysis used 697.06 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -1523.58
Likelihood of best state for "cold" chain of run 2 was -1524.33
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
58.4 % ( 53 %) Dirichlet(Revmat{all})
75.5 % ( 66 %) Slider(Revmat{all})
26.6 % ( 25 %) Dirichlet(Pi{all})
28.4 % ( 14 %) Slider(Pi{all})
81.1 % ( 57 %) Multiplier(Alpha{1,2})
66.5 % ( 37 %) Multiplier(Alpha{3})
88.5 % ( 79 %) Slider(Pinvar{all})
76.1 % ( 79 %) ExtSPR(Tau{all},V{all})
71.5 % ( 76 %) ExtTBR(Tau{all},V{all})
81.8 % ( 84 %) NNI(Tau{all},V{all})
55.2 % ( 57 %) ParsSPR(Tau{all},V{all})
27.6 % ( 30 %) Multiplier(V{all})
80.7 % ( 82 %) Nodeslider(V{all})
25.8 % ( 30 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
57.1 % ( 40 %) Dirichlet(Revmat{all})
75.1 % ( 67 %) Slider(Revmat{all})
26.7 % ( 23 %) Dirichlet(Pi{all})
28.4 % ( 26 %) Slider(Pi{all})
80.9 % ( 59 %) Multiplier(Alpha{1,2})
67.1 % ( 46 %) Multiplier(Alpha{3})
88.4 % ( 83 %) Slider(Pinvar{all})
76.2 % ( 76 %) ExtSPR(Tau{all},V{all})
71.4 % ( 66 %) ExtTBR(Tau{all},V{all})
82.1 % ( 87 %) NNI(Tau{all},V{all})
55.5 % ( 56 %) ParsSPR(Tau{all},V{all})
27.5 % ( 26 %) Multiplier(V{all})
80.8 % ( 84 %) Nodeslider(V{all})
25.7 % ( 27 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.47 0.15 0.04
2 | 166393 0.48 0.16
3 | 167381 165945 0.49
4 | 166704 166731 166846
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.47 0.15 0.03
2 | 166472 0.47 0.16
3 | 166602 167055 0.48
4 | 166433 167126 166312
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -1539.15
| 1 1 1 |
| 1 1 2 2 |
|1 22 12 2 2 1 1 |
| 1 12 1 2 2 1 2 1|
| 2 1 1 2 1 2 1 2 11 2 |
|2 1 2 2 1 2 2 11 11 2 2 112 2 * 1 |
| 1* 11 2 2 2 12|
| 1 2 2 1 11 1 1 2 1111 222 |
| 1 2 11 211 2 12 |
| 2 1 21 12 2 1 2 |
| 1 2 1 2 2 |
| 2 2 2 |
| 2 2 2 |
| 2 2 1 2 2 1 1 |
| 2 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -1546.43
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1532.72 -1558.23
2 -1532.53 -1563.14
--------------------------------------
TOTAL -1532.62 -1562.45
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.082739 0.000170 0.058873 0.108173 0.081693 1366.45 1430.87 1.001
r(A<->C){all} 0.138947 0.002694 0.049481 0.244073 0.133626 467.40 499.87 1.000
r(A<->G){all} 0.206684 0.003643 0.100408 0.328648 0.203263 412.69 440.44 1.001
r(A<->T){all} 0.021244 0.000259 0.000112 0.052659 0.017624 736.04 764.58 1.000
r(C<->G){all} 0.022645 0.000482 0.000028 0.066081 0.016052 588.27 622.46 1.001
r(C<->T){all} 0.522248 0.004724 0.388374 0.658400 0.523663 566.60 630.99 1.000
r(G<->T){all} 0.088232 0.000960 0.033792 0.150853 0.084717 507.55 643.64 1.000
pi(A){all} 0.199486 0.000191 0.171021 0.224560 0.199188 847.72 1037.71 1.001
pi(C){all} 0.181248 0.000167 0.156598 0.205652 0.181102 1171.41 1249.97 1.000
pi(G){all} 0.214315 0.000188 0.187417 0.241479 0.214298 968.45 1047.88 1.000
pi(T){all} 0.404951 0.000270 0.373708 0.437977 0.405219 1027.49 1097.17 1.001
alpha{1,2} 0.389585 0.365892 0.000105 1.494356 0.185571 624.66 800.82 1.000
alpha{3} 1.839187 1.473654 0.181159 4.345382 1.560764 1070.84 1219.18 1.000
pinvar{all} 0.325976 0.030697 0.000069 0.602949 0.331244 793.16 803.23 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C65
2 -- C598
3 -- C287
4 -- C195
5 -- C71
6 -- C589
7 -- C207
8 -- C565
9 -- C224
10 -- C81
11 -- C543
12 -- C223
13 -- C60
14 -- C303
15 -- C619
16 -- C624
17 -- C369
18 -- C283
19 -- C117
20 -- C380
21 -- C27
22 -- C141
23 -- C129
24 -- C291
25 -- C483
26 -- C377
27 -- C583
28 -- C559
29 -- C407
30 -- C595
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
------------------------------------
1 -- .*****************************
2 -- .*............................
3 -- ..*...........................
4 -- ...*..........................
5 -- ....*.........................
6 -- .....*........................
7 -- ......*.......................
8 -- .......*......................
9 -- ........*.....................
10 -- .........*....................
11 -- ..........*...................
12 -- ...........*..................
13 -- ............*.................
14 -- .............*................
15 -- ..............*...............
16 -- ...............*..............
17 -- ................*.............
18 -- .................*............
19 -- ..................*...........
20 -- ...................*..........
21 -- ....................*.........
22 -- .....................*........
23 -- ......................*.......
24 -- .......................*......
25 -- ........................*.....
26 -- .........................*....
27 -- ..........................*...
28 -- ...........................*..
29 -- ............................*.
30 -- .............................*
31 -- ......*.............*.........
32 -- ......*...........*.*.........
33 -- ......*...........*.*....*....
34 -- ......*......*..*.*.*....*....
35 -- .***.*******.******.*..*******
36 -- .............*..*.............
37 -- ......*.........*.*.*....*....
38 -- ......*......*....*.*....*....
39 -- .............*..*........*....
40 -- .***.*.*****.*****.....*******
41 -- ....*.......*.................
42 -- ............*......*..........
43 -- ...................*..*.......
44 -- ....*..............*..........
45 -- ...................*.*........
46 -- ............*........*........
47 -- .***.*******.******.**.*******
48 -- .***********.*****************
49 -- .....................**.......
50 -- .********************.********
51 -- .******************.**********
52 -- ....*.................*.......
53 -- ............*.........*.......
54 -- .***.*************************
55 -- .*********************.*******
56 -- .***********.******.*..*******
57 -- ....*................*........
------------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
31 2998 0.998668 0.000942 0.998001 0.999334 2
32 2980 0.992672 0.000000 0.992672 0.992672 2
33 2403 0.800466 0.027794 0.780813 0.820120 2
34 2364 0.787475 0.030150 0.766156 0.808794 2
35 2165 0.721186 0.015546 0.710193 0.732179 2
36 1212 0.403731 0.004711 0.400400 0.407062 2
37 716 0.238508 0.009422 0.231845 0.245170 2
38 670 0.223185 0.015075 0.212525 0.233844 2
39 589 0.196203 0.030621 0.174550 0.217855 2
40 473 0.157562 0.037216 0.131246 0.183877 2
41 343 0.114257 0.000471 0.113924 0.114590 2
42 338 0.112592 0.013191 0.103264 0.121919 2
43 336 0.111925 0.002827 0.109927 0.113924 2
44 326 0.108594 0.014133 0.098601 0.118588 2
45 319 0.106262 0.015546 0.095270 0.117255 2
46 319 0.106262 0.014604 0.095936 0.116589 2
47 316 0.105263 0.016959 0.093271 0.117255 2
48 315 0.104930 0.004240 0.101932 0.107928 2
49 315 0.104930 0.009893 0.097935 0.111925 2
50 314 0.104597 0.000942 0.103931 0.105263 2
51 311 0.103598 0.005182 0.099933 0.107262 2
52 311 0.103598 0.009893 0.096602 0.110593 2
53 310 0.103264 0.009422 0.096602 0.109927 2
54 309 0.102931 0.002355 0.101266 0.104597 2
55 308 0.102598 0.004711 0.099267 0.105929 2
56 302 0.100600 0.004711 0.097268 0.103931 2
57 290 0.096602 0.005653 0.092605 0.100600 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.000704 0.000001 0.000000 0.002136 0.000485 1.004 2
length{all}[2] 0.001378 0.000001 0.000007 0.003358 0.001128 1.000 2
length{all}[3] 0.001382 0.000001 0.000058 0.003329 0.001151 1.000 2
length{all}[4] 0.001399 0.000001 0.000057 0.003296 0.001156 1.000 2
length{all}[5] 0.002080 0.000002 0.000243 0.004640 0.001815 1.000 2
length{all}[6] 0.000682 0.000000 0.000000 0.002075 0.000474 1.000 2
length{all}[7] 0.006669 0.000006 0.002595 0.011749 0.006310 1.000 2
length{all}[8] 0.000680 0.000000 0.000000 0.001985 0.000476 1.002 2
length{all}[9] 0.000689 0.000000 0.000001 0.002017 0.000477 1.000 2
length{all}[10] 0.000725 0.000001 0.000000 0.002206 0.000498 1.000 2
length{all}[11] 0.000690 0.000000 0.000000 0.002025 0.000498 1.000 2
length{all}[12] 0.000659 0.000000 0.000000 0.002006 0.000454 1.001 2
length{all}[13] 0.000683 0.000001 0.000000 0.002077 0.000470 1.000 2
length{all}[14] 0.002811 0.000002 0.000496 0.005688 0.002545 1.000 2
length{all}[15] 0.001355 0.000001 0.000053 0.003328 0.001122 1.000 2
length{all}[16] 0.000702 0.000001 0.000000 0.002060 0.000484 1.000 2
length{all}[17] 0.000692 0.000000 0.000000 0.002108 0.000466 1.000 2
length{all}[18] 0.000703 0.000001 0.000001 0.002105 0.000480 1.000 2
length{all}[19] 0.009084 0.000009 0.004230 0.015093 0.008690 1.003 2
length{all}[20] 0.000676 0.000000 0.000000 0.002048 0.000471 1.000 2
length{all}[21] 0.011301 0.000011 0.005428 0.018318 0.010827 1.001 2
length{all}[22] 0.002061 0.000001 0.000080 0.004324 0.001829 1.000 2
length{all}[23] 0.000678 0.000000 0.000000 0.001972 0.000467 1.001 2
length{all}[24] 0.000682 0.000000 0.000000 0.002070 0.000463 1.000 2
length{all}[25] 0.000684 0.000000 0.000000 0.002008 0.000478 1.000 2
length{all}[26] 0.001044 0.000001 0.000000 0.003235 0.000715 1.001 2
length{all}[27] 0.001347 0.000001 0.000046 0.003301 0.001106 1.001 2
length{all}[28] 0.000689 0.000001 0.000000 0.002129 0.000471 1.000 2
length{all}[29] 0.001335 0.000001 0.000036 0.003193 0.001120 1.000 2
length{all}[30] 0.001401 0.000001 0.000035 0.003397 0.001177 1.000 2
length{all}[31] 0.003581 0.000003 0.000695 0.007322 0.003258 1.001 2
length{all}[32] 0.002998 0.000003 0.000192 0.005931 0.002711 1.000 2
length{all}[33] 0.002070 0.000002 0.000225 0.004496 0.001817 1.000 2
length{all}[34] 0.001993 0.000002 0.000132 0.004426 0.001769 1.000 2
length{all}[35] 0.001366 0.000001 0.000004 0.003197 0.001154 1.000 2
length{all}[36] 0.000906 0.000001 0.000001 0.002731 0.000639 0.999 2
length{all}[37] 0.000659 0.000000 0.000000 0.001954 0.000458 0.999 2
length{all}[38] 0.000722 0.000001 0.000001 0.002169 0.000488 0.999 2
length{all}[39] 0.002025 0.000002 0.000198 0.004688 0.001702 1.020 2
length{all}[40] 0.001420 0.000001 0.000034 0.003631 0.001204 1.001 2
length{all}[41] 0.000748 0.000001 0.000002 0.001980 0.000537 0.997 2
length{all}[42] 0.000700 0.000001 0.000001 0.002158 0.000468 1.000 2
length{all}[43] 0.000731 0.000001 0.000001 0.002343 0.000481 1.001 2
length{all}[44] 0.000730 0.000000 0.000007 0.002201 0.000495 1.001 2
length{all}[45] 0.000703 0.000000 0.000003 0.001954 0.000526 0.997 2
length{all}[46] 0.000702 0.000001 0.000003 0.002292 0.000435 1.009 2
length{all}[47] 0.000805 0.000001 0.000002 0.002449 0.000557 0.998 2
length{all}[48] 0.000636 0.000000 0.000002 0.002012 0.000394 1.005 2
length{all}[49] 0.000675 0.000000 0.000002 0.001892 0.000448 1.001 2
length{all}[50] 0.000701 0.000001 0.000003 0.002004 0.000477 0.998 2
length{all}[51] 0.000616 0.000000 0.000001 0.001773 0.000416 0.997 2
length{all}[52] 0.000669 0.000000 0.000000 0.001957 0.000480 1.009 2
length{all}[53] 0.000810 0.000001 0.000000 0.002468 0.000573 0.997 2
length{all}[54] 0.000720 0.000000 0.000002 0.001972 0.000561 1.000 2
length{all}[55] 0.000664 0.000000 0.000001 0.001927 0.000495 0.998 2
length{all}[56] 0.000702 0.000000 0.000006 0.002070 0.000496 0.998 2
length{all}[57] 0.000655 0.000000 0.000001 0.002034 0.000462 1.002 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.011341
Maximum standard deviation of split frequencies = 0.037216
Average PSRF for parameter values (excluding NA and >10.0) = 1.001
Maximum PSRF for parameter values = 1.020
Clade credibility values:
/--------------------------------------------------------------------- C65 (1)
|
|--------------------------------------------------------------------- C71 (5)
|
|--------------------------------------------------------------------- C60 (13)
|
|--------------------------------------------------------------------- C380 (20)
|
|--------------------------------------------------------------------- C141 (22)
|
|--------------------------------------------------------------------- C129 (23)
|
| /--------------------------------------------------------- C598 (2)
| |
| |--------------------------------------------------------- C287 (3)
| |
| |--------------------------------------------------------- C195 (4)
| |
+ |--------------------------------------------------------- C589 (6)
| |
| | /----------- C207 (7)
| | /----100----+
| | | \----------- C27 (21)
| | /----99----+
| | | \----------------------- C117 (19)
| | /-----80----+
| | | \---------------------------------- C377 (26)
| | |
| |----79----+---------------------------------------------- C303 (14)
| | |
| | \---------------------------------------------- C369 (17)
| |
| |--------------------------------------------------------- C565 (8)
| |
| |--------------------------------------------------------- C224 (9)
\-----72----+
|--------------------------------------------------------- C81 (10)
|
|--------------------------------------------------------- C543 (11)
|
|--------------------------------------------------------- C223 (12)
|
|--------------------------------------------------------- C619 (15)
|
|--------------------------------------------------------- C624 (16)
|
|--------------------------------------------------------- C283 (18)
|
|--------------------------------------------------------- C291 (24)
|
|--------------------------------------------------------- C483 (25)
|
|--------------------------------------------------------- C583 (27)
|
|--------------------------------------------------------- C559 (28)
|
|--------------------------------------------------------- C407 (29)
|
\--------------------------------------------------------- C595 (30)
Phylogram (based on average branch lengths):
/-- C65 (1)
|
|------ C71 (5)
|
|-- C60 (13)
|
|-- C380 (20)
|
|------ C141 (22)
|
|-- C129 (23)
|
| /--- C598 (2)
| |
| |--- C287 (3)
| |
| |---- C195 (4)
| |
+ |- C589 (6)
| |
| | /-------------------- C207 (7)
| | /----------+
| | | \----------------------------------- C27 (21)
| | /--------+
| | | \---------------------------- C117 (19)
| | /----+
| | | \--- C377 (26)
| | |
| |-----+-------- C303 (14)
| | |
| | \- C369 (17)
| |
| |- C565 (8)
| |
| |- C224 (9)
\---+
|- C81 (10)
|
|- C543 (11)
|
|- C223 (12)
|
|--- C619 (15)
|
|- C624 (16)
|
|- C283 (18)
|
|- C291 (24)
|
|- C483 (25)
|
|--- C583 (27)
|
|- C559 (28)
|
|--- C407 (29)
|
\---- C595 (30)
|---------------| 0.005 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3002 trees sampled):
50 % credible set contains 1501 trees
90 % credible set contains 2702 trees
95 % credible set contains 2852 trees
99 % credible set contains 2972 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Thu Nov 17 16:37:14 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/LZW_nsp3_VIPR_ALG4_672096717_10190_11029_1_2012_02_China_Unknown_PEDV.result--
-- Starting log on Fri Nov 18 07:12:23 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/LZW_nsp3_VIPR_ALG4_672096717_10190_11029_1_2012_02_China_Unknown_PEDV.result/original_alignment/codeml,LZW_nsp3_VIPR_ALG4_672096717_10190_11029_1_2012_02_China_Unknown_PEDV.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C303 840 sites
reading seq# 2 C624 840 sites
reading seq# 3 C619 840 sites
reading seq# 4 C543 840 sites
reading seq# 5 C283 840 sites
reading seq# 6 C369 840 sites
reading seq# 7 C117 840 sites
reading seq# 8 C60 840 sites
reading seq# 9 C559 840 sites
reading seq#10 C380 840 sites
reading seq#11 C598 840 sites
reading seq#12 C65 840 sites
reading seq#13 C287 840 sites
reading seq#14 C27 840 sites
reading seq#15 C141 840 sites
reading seq#16 C71 840 sites
reading seq#17 C195 840 sites
reading seq#18 C589 840 sites
reading seq#19 C291 840 sites
reading seq#20 C129 840 sites
reading seq#21 C565 840 sites
reading seq#22 C207 840 sites
reading seq#23 C377 840 sites
reading seq#24 C583 840 sites
reading seq#25 C483 840 sites
reading seq#26 C81 840 sites
reading seq#27 C224 840 sites
reading seq#28 C595 840 sites
reading seq#29 C407 840 sites
reading seq#30 C223 840 sitesns = 30 ls = 840
Reading sequences, sequential format..
Reading seq # 1: C303
Reading seq # 2: C624
Reading seq # 3: C619
Reading seq # 4: C543
Reading seq # 5: C283
Reading seq # 6: C369
Reading seq # 7: C117
Reading seq # 8: C60
Reading seq # 9: C559
Reading seq #10: C380
Reading seq #11: C598
Reading seq #12: C65
Reading seq #13: C287
Reading seq #14: C27
Reading seq #15: C141
Reading seq #16: C71
Reading seq #17: C195
Reading seq #18: C589
Reading seq #19: C291
Reading seq #20: C129
Reading seq #21: C565
Reading seq #22: C207
Reading seq #23: C377
Reading seq #24: C583
Reading seq #25: C483
Reading seq #26: C81
Reading seq #27: C224
Reading seq #28: C595
Reading seq #29: C407
Reading seq #30: C223
Sequences read..
Counting site patterns.. 0:00
Compressing, 105 patterns at 280 / 280 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 105 patterns at 280 / 280 sites (100.0%), 0:00
Counting codons..
3480 bytes for distance
102480 bytes for conP
9240 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(12, 16, 8, 10, 15, 20, (11, 13, 17, 18, ((((22, 14), 7), 23), 1, 6), 21, 27, 26, 4, 30, 3, 2, 5, 19, 25, 24, 9, 29, 28)); MP score: 61
307440 bytes for conP, adjusted
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
32
0.017190 0.099117 0.065062 0.091343 0.057269 0.098801 0.014860 0.015968 0.089903 0.012913 0.076146 0.026294 0.020495 0.069806 0.074231 0.083750 0.062291 0.086261 0.012486 0.096450 0.043089 0.066010 0.075478 0.024510 0.087242 0.108326 0.069131 0.047764 0.065132 0.025106 0.077576 0.031828 0.077329 0.039892 0.091394 0.300000 0.873719 0.127936
ntime & nrate & np: 35 2 38
Bounds (np=38):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 19.343375
np = 38
lnL0 = -1836.948590
Iterating by ming2
Initial: fx= 1836.948590
x= 0.01719 0.09912 0.06506 0.09134 0.05727 0.09880 0.01486 0.01597 0.08990 0.01291 0.07615 0.02629 0.02049 0.06981 0.07423 0.08375 0.06229 0.08626 0.01249 0.09645 0.04309 0.06601 0.07548 0.02451 0.08724 0.10833 0.06913 0.04776 0.06513 0.02511 0.07758 0.03183 0.07733 0.03989 0.09139 0.30000 0.87372 0.12794
1 h-m-p 0.0000 0.0001 1246.7016 ++ 1746.897243 m 0.0001 43 | 1/38
2 h-m-p 0.0000 0.0000 2088.7639 ++ 1723.189674 m 0.0000 84 | 2/38
3 h-m-p 0.0000 0.0000 2548.9726 ++ 1690.538515 m 0.0000 125 | 3/38
4 h-m-p 0.0000 0.0000 1888.3879 ++ 1688.638136 m 0.0000 166 | 4/38
5 h-m-p 0.0000 0.0000 3004.2153 ++ 1645.951387 m 0.0000 207 | 5/38
6 h-m-p 0.0000 0.0000 71481.4991 ++ 1636.139067 m 0.0000 248 | 6/38
7 h-m-p 0.0000 0.0000 2255.7245 +YYYCYCCC 1632.079334 7 0.0000 300 | 6/38
8 h-m-p 0.0000 0.0000 2116.3102 +YYYCCC 1629.406939 5 0.0000 349 | 6/38
9 h-m-p 0.0000 0.0001 918.7666 ++ 1610.301254 m 0.0001 390 | 7/38
10 h-m-p 0.0000 0.0000 1003.3760 ++ 1609.360024 m 0.0000 431 | 8/38
11 h-m-p 0.0000 0.0000 397.1266 ++ 1608.084996 m 0.0000 472 | 9/38
12 h-m-p 0.0000 0.0000 5428.4547 ++ 1595.103249 m 0.0000 513 | 10/38
13 h-m-p 0.0000 0.0000 5561.4946 ++ 1594.291590 m 0.0000 554 | 11/38
14 h-m-p 0.0000 0.0000 713.9248 ++ 1592.880679 m 0.0000 595 | 12/38
15 h-m-p 0.0000 0.0000 1654.8599 ++ 1592.622690 m 0.0000 636 | 13/38
16 h-m-p 0.0000 0.0000 12856.1149 ++ 1584.411082 m 0.0000 677 | 14/38
17 h-m-p 0.0000 0.0000 1596.5333 ++ 1582.329893 m 0.0000 718 | 15/38
18 h-m-p 0.0000 0.0000 1337.4324 ++ 1577.647848 m 0.0000 759 | 16/38
19 h-m-p 0.0000 0.0000 668.7797 ++ 1571.113249 m 0.0000 800 | 17/38
20 h-m-p 0.0000 0.0002 421.9714 ++ 1543.387427 m 0.0002 841 | 17/38
21 h-m-p 0.0000 0.0000 1398.1324 CCCC 1543.280368 3 0.0000 888 | 17/38
22 h-m-p 0.0000 0.0000 674.8035 +YYYYCYCCC 1539.709190 8 0.0000 941 | 17/38
23 h-m-p 0.0000 0.0000 695.0797 +YYYCCC 1536.680269 5 0.0000 990 | 17/38
24 h-m-p 0.0000 0.0002 211.0081 +YYCYCC 1532.905953 5 0.0001 1039 | 17/38
25 h-m-p 0.0003 0.0013 86.2760 +YCYCCC 1527.367059 5 0.0008 1089 | 17/38
26 h-m-p 0.0003 0.0015 58.4321 +YYCCCC 1523.600666 5 0.0010 1139 | 17/38
27 h-m-p 0.0000 0.0002 210.0202 +YYYCCC 1522.131409 5 0.0001 1188 | 17/38
28 h-m-p 0.0002 0.0014 108.6490 +CYYYYC 1512.937475 5 0.0012 1237 | 17/38
29 h-m-p 0.0002 0.0010 116.7709 +YYYCCC 1507.357909 5 0.0007 1286 | 17/38
30 h-m-p 0.0000 0.0001 491.1727 +YCCC 1504.185540 3 0.0001 1333 | 17/38
31 h-m-p 0.0005 0.0025 62.7702 YCYCCC 1499.416546 5 0.0013 1382 | 17/38
32 h-m-p 0.0057 0.0286 3.3648 +YYYYYCCCC 1490.730034 8 0.0230 1435 | 17/38
33 h-m-p 0.0031 0.0154 5.7890 CYCCC 1489.206329 4 0.0054 1483 | 17/38
34 h-m-p 0.0078 0.0390 1.0763 +YCYCCC 1488.411955 5 0.0216 1533 | 17/38
35 h-m-p 0.0067 0.0336 1.9166 +YYCYCC 1483.609930 5 0.0238 1582 | 17/38
36 h-m-p 0.0372 0.1861 0.4078 +CYYCC 1476.863860 4 0.1627 1630 | 17/38
37 h-m-p 0.0003 0.0015 6.3804 CCC 1476.829830 2 0.0005 1696 | 17/38
38 h-m-p 0.0020 0.0101 0.5545 ++ 1476.061029 m 0.0101 1737 | 18/38
39 h-m-p 0.0045 0.0771 0.7539 ++YYCYCCC 1471.696807 6 0.0605 1810 | 18/38
40 h-m-p 0.0220 0.1098 1.0903 CCC 1470.056136 2 0.0310 1875 | 18/38
41 h-m-p 0.1250 3.4539 0.2708 ++YYCCC 1462.194116 4 1.6694 1924 | 18/38
42 h-m-p 0.7070 3.5349 0.3049 YCCC 1459.321749 3 1.2999 1990 | 18/38
43 h-m-p 0.2321 1.1603 0.3328 YCCCC 1457.234525 4 0.5481 2058 | 17/38
44 h-m-p 0.0002 0.0009 245.7748 CYC 1456.783895 2 0.0002 2122 | 17/38
45 h-m-p 0.2365 4.1342 0.2040 +CCCCC 1455.438366 4 1.3999 2172 | 17/38
46 h-m-p 0.9145 7.2538 0.3122 CCCC 1455.077078 3 0.6941 2240 | 17/38
47 h-m-p 0.7441 6.4891 0.2912 CCC 1454.932211 2 0.6924 2306 | 17/38
48 h-m-p 0.3664 5.0356 0.5504 CCC 1454.678545 2 0.5305 2372 | 17/38
49 h-m-p 0.6796 7.2492 0.4297 CC 1454.673301 1 0.1555 2436 | 17/38
50 h-m-p 0.0960 3.9187 0.6962 YC 1454.660309 1 0.1666 2499 | 17/38
51 h-m-p 0.1533 3.9093 0.7564 CC 1454.652203 1 0.1231 2563 | 17/38
52 h-m-p 0.1151 3.7552 0.8088 YC 1454.650007 1 0.0621 2626 | 17/38
53 h-m-p 0.0588 4.0178 0.8543 CC 1454.646188 1 0.0788 2690 | 17/38
54 h-m-p 0.0762 3.9486 0.8838 YC 1454.644585 1 0.0510 2753 | 17/38
55 h-m-p 0.0486 3.9807 0.9274 CC 1454.641101 1 0.0736 2817 | 17/38
56 h-m-p 0.0709 4.0454 0.9631 YC 1454.639375 1 0.0519 2880 | 17/38
57 h-m-p 0.0491 4.1795 1.0169 CC 1454.635917 1 0.0720 2944 | 17/38
58 h-m-p 0.3642 5.2410 0.2010 +YCCCC 1454.220762 4 1.6630 2993 | 17/38
59 h-m-p 1.4418 7.2089 0.1835 CCCC 1453.935243 3 1.6977 3061 | 17/38
60 h-m-p 1.0557 7.0205 0.2951 YC 1453.556701 1 2.0823 3124 | 17/38
61 h-m-p 0.7248 3.6239 0.4247 CCCC 1453.299957 3 1.1397 3192 | 17/38
62 h-m-p 1.2535 6.2674 0.1404 YCC 1453.242417 2 0.7187 3257 | 17/38
63 h-m-p 0.8977 8.0000 0.1124 CC 1453.237588 1 0.3422 3321 | 17/38
64 h-m-p 0.2365 6.2445 0.1626 -----------Y 1453.237588 0 0.0000 3394 | 17/38
65 h-m-p 0.0013 0.6684 0.0951 ++CC 1453.232231 1 0.0276 3460 | 17/38
66 h-m-p 0.2378 5.9440 0.0110 C 1453.232021 0 0.0490 3522 | 17/38
67 h-m-p 0.0330 4.0668 0.0164 -Y 1453.232020 0 0.0012 3585 | 17/38
68 h-m-p 0.0062 3.1027 0.0222 C 1453.232012 0 0.0054 3647 | 17/38
69 h-m-p 0.0051 2.5504 0.0278 C 1453.232004 0 0.0045 3709 | 17/38
70 h-m-p 0.0044 2.1942 0.0334 C 1453.231991 0 0.0047 3771 | 17/38
71 h-m-p 0.0040 1.9426 0.0391 C 1453.231976 0 0.0047 3833 | 17/38
72 h-m-p 0.0041 1.7547 0.0450 C 1453.231958 0 0.0046 3895 | 17/38
73 h-m-p 0.0040 1.6072 0.0512 C 1453.231937 0 0.0044 3957 | 17/38
74 h-m-p 0.0039 1.4876 0.0577 C 1453.231916 0 0.0042 4019 | 17/38
75 h-m-p 0.0037 1.3879 0.0646 C 1453.231893 0 0.0039 4081 | 17/38
76 h-m-p 0.0035 1.3030 0.0719 C 1453.231870 0 0.0037 4143 | 17/38
77 h-m-p 0.0033 1.2295 0.0798 C 1453.231846 0 0.0035 4205 | 17/38
78 h-m-p 0.0032 1.1650 0.0882 C 1453.231823 0 0.0033 4267 | 17/38
79 h-m-p 0.0030 1.1077 0.0971 C 1453.231799 0 0.0031 4329 | 17/38
80 h-m-p 0.0028 1.0565 0.1066 C 1453.231776 0 0.0029 4391 | 17/38
81 h-m-p 0.0026 1.0102 0.1166 C 1453.231754 0 0.0027 4453 | 17/38
82 h-m-p 0.0025 0.9682 0.1273 C 1453.231731 0 0.0026 4515 | 17/38
83 h-m-p 0.0024 0.9298 0.1386 C 1453.231710 0 0.0024 4577 | 17/38
84 h-m-p 0.0022 0.8945 0.1504 C 1453.231688 0 0.0023 4639 | 17/38
85 h-m-p 0.0021 0.8620 0.1629 C 1453.231667 0 0.0022 4701 | 17/38
86 h-m-p 0.0020 0.8319 0.1760 C 1453.231647 0 0.0021 4763 | 17/38
87 h-m-p 0.0019 0.8039 0.1898 C 1453.231627 0 0.0020 4825 | 17/38
88 h-m-p 0.0018 0.7779 0.2041 C 1453.231607 0 0.0019 4887 | 17/38
89 h-m-p 0.0017 0.7535 0.2191 C 1453.231588 0 0.0018 4949 | 17/38
90 h-m-p 0.0017 0.7307 0.2348 C 1453.231569 0 0.0017 5011 | 17/38
91 h-m-p 0.0016 0.7093 0.2511 C 1453.231550 0 0.0016 5073 | 17/38
92 h-m-p 0.0015 0.6892 0.2680 C 1453.231532 0 0.0016 5135 | 17/38
93 h-m-p 0.0015 0.6702 0.2856 C 1453.231513 0 0.0015 5197 | 17/38
94 h-m-p 0.0014 0.6523 0.3038 C 1453.231495 0 0.0014 5259 | 17/38
95 h-m-p 0.0014 0.6354 0.3226 C 1453.231478 0 0.0014 5321 | 17/38
96 h-m-p 0.0013 0.6194 0.3421 C 1453.231460 0 0.0013 5383 | 17/38
97 h-m-p 0.0013 0.6042 0.3623 C 1453.231443 0 0.0013 5445 | 17/38
98 h-m-p 0.0012 0.5897 0.3832 C 1453.231426 0 0.0012 5507 | 17/38
99 h-m-p 0.0012 0.5760 0.4046 C 1453.231409 0 0.0012 5569 | 17/38
100 h-m-p 0.0011 0.5630 0.4268 C 1453.231393 0 0.0012 5631 | 17/38
101 h-m-p 0.0011 0.5505 0.4496 C 1453.231376 0 0.0011 5693 | 17/38
102 h-m-p 0.0011 0.5387 0.4731 C 1453.231360 0 0.0011 5755 | 17/38
103 h-m-p 0.0011 0.5274 0.4972 C 1453.231343 0 0.0011 5817 | 17/38
104 h-m-p 0.0010 0.5165 0.5221 C 1453.231327 0 0.0010 5879 | 17/38
105 h-m-p 0.0010 0.5062 0.5476 C 1453.231311 0 0.0010 5941 | 17/38
106 h-m-p 0.0010 0.4963 0.5737 C 1453.231295 0 0.0010 6003 | 17/38
107 h-m-p 0.0010 0.4868 0.6006 C 1453.231279 0 0.0010 6065 | 17/38
108 h-m-p 0.0010 0.4777 0.6281 C 1453.231264 0 0.0009 6127 | 17/38
109 h-m-p 0.0009 0.4690 0.6563 C 1453.231248 0 0.0009 6189 | 17/38
110 h-m-p 0.0009 0.4606 0.6852 C 1453.231233 0 0.0009 6251 | 17/38
111 h-m-p 0.0009 0.4525 0.7148 C 1453.231217 0 0.0009 6313 | 17/38
112 h-m-p 0.0009 0.4448 0.7451 C 1453.231202 0 0.0008 6375 | 17/38
113 h-m-p 0.0009 0.4373 0.7760 C 1453.231187 0 0.0008 6437 | 17/38
114 h-m-p 0.0009 0.4301 0.8077 C 1453.231172 0 0.0008 6499 | 17/38
115 h-m-p 0.0008 0.4232 0.8400 C 1453.231156 0 0.0008 6561 | 17/38
116 h-m-p 0.0008 0.4166 0.8731 C 1453.231141 0 0.0008 6623 | 17/38
117 h-m-p 0.0008 0.4101 0.9068 C 1453.231126 0 0.0008 6685 | 17/38
118 h-m-p 0.0008 0.4039 0.9413 C 1453.231112 0 0.0007 6747 | 17/38
119 h-m-p 0.0008 0.3979 0.9765 C 1453.231097 0 0.0007 6809 | 17/38
120 h-m-p 0.0008 0.3921 1.0123 C 1453.231082 0 0.0007 6871 | 17/38
121 h-m-p 0.2509 8.0000 0.0029 +YCC 1453.169299 2 1.9129 6916 | 17/38
122 h-m-p 1.6000 8.0000 0.0022 YYC 1453.146915 2 1.2683 6980 | 17/38
123 h-m-p 0.6686 3.7535 0.0041 YCC 1453.133926 2 0.4584 7045 | 17/38
124 h-m-p 0.2809 2.8778 0.0067 YC 1453.130442 1 0.1830 7108 | 17/38
125 h-m-p 0.0999 2.4155 0.0123 C 1453.128979 0 0.0917 7170 | 17/38
126 h-m-p 0.0519 1.9588 0.0218 C 1453.128383 0 0.0457 7232 | 17/38
127 h-m-p 0.0282 1.6264 0.0353 C 1453.128099 0 0.0251 7294 | 17/38
128 h-m-p 0.0169 1.3965 0.0521 C 1453.127942 0 0.0153 7356 | 17/38
129 h-m-p 0.0111 1.2386 0.0718 C 1453.127843 0 0.0103 7418 | 17/38
130 h-m-p 0.0079 1.1261 0.0935 C 1453.127776 0 0.0074 7480 | 17/38
131 h-m-p 0.0059 1.0426 0.1170 C 1453.127730 0 0.0055 7542 | 17/38
132 h-m-p 0.0045 0.9279 0.1420 C 1453.127696 0 0.0042 7604 | 17/38
133 h-m-p 0.0035 0.8152 0.1684 C 1453.127672 0 0.0033 7666 | 17/38
134 h-m-p 0.0028 0.7293 0.1961 C 1453.127655 0 0.0026 7728 | 17/38
135 h-m-p 0.0022 0.6618 0.2252 C 1453.127642 0 0.0020 7790 | 17/38
136 h-m-p 0.0018 0.6073 0.2556 C 1453.127632 0 0.0017 7852 | 17/38
137 h-m-p 0.0015 0.5623 0.2875 C 1453.127625 0 0.0013 7914 | 17/38
138 h-m-p 0.0012 0.5244 0.3207 C 1453.127619 0 0.0011 7976 | 17/38
139 h-m-p 0.0010 0.4921 0.3555 C 1453.127615 0 0.0009 8038 | 17/38
140 h-m-p 0.0009 0.4642 0.3917 C 1453.127612 0 0.0008 8100 | 17/38
141 h-m-p 0.0009 0.4397 0.4295 Y 1453.127609 0 0.0007 8162 | 17/38
142 h-m-p 0.0008 0.4181 0.4688 Y 1453.127607 0 0.0006 8224 | 17/38
143 h-m-p 0.0008 0.3989 0.5097 Y 1453.127605 0 0.0005 8286 | 17/38
144 h-m-p 0.0008 0.3816 0.5521 Y 1453.127604 0 0.0004 8348 | 17/38
145 h-m-p 0.0007 0.3658 0.5963 Y 1453.127602 0 0.0004 8410 | 17/38
146 h-m-p 0.0007 0.3516 0.6420 Y 1453.127601 0 0.0003 8472 | 17/38
147 h-m-p 0.0007 0.3386 0.6893 Y 1453.127601 0 0.0003 8534 | 17/38
148 h-m-p 0.0007 0.3267 0.7382 Y 1453.127600 0 0.0003 8596 | 17/38
149 h-m-p 0.0006 0.3156 0.7888 C 1453.127599 0 0.0002 8658 | 17/38
150 h-m-p 0.0006 0.3054 0.8409 C 1453.127598 0 0.0002 8720 | 17/38
151 h-m-p 0.0006 0.2959 0.8948 C 1453.127598 0 0.0002 8782 | 17/38
152 h-m-p 0.0006 0.2870 0.9502 C 1453.127597 0 0.0002 8844 | 17/38
153 h-m-p 0.0006 0.2788 1.0074 C 1453.127597 0 0.0002 8906 | 17/38
154 h-m-p 0.0461 8.0000 0.0041 ++CC 1453.104249 1 1.1692 8951 | 17/38
155 h-m-p 1.4132 8.0000 0.0034 CC 1453.098820 1 1.3366 9015 | 17/38
156 h-m-p 0.6283 8.0000 0.0072 C 1453.097425 0 0.5888 9077 | 17/38
157 h-m-p 0.2072 8.0000 0.0204 YC 1453.097023 1 0.1531 9140 | 17/38
158 h-m-p 0.0870 5.6368 0.0359 YC 1453.096896 1 0.0584 9203 | 17/38
159 h-m-p 0.0417 4.6047 0.0503 YC 1453.096867 1 0.0223 9266 | 17/38
160 h-m-p 0.0171 3.9675 0.0654 Y 1453.096863 0 0.0073 9328 | 17/38
161 h-m-p 0.0070 3.4902 0.0820 Y 1453.096863 0 0.0010 9390 | 17/38
162 h-m-p 0.0062 3.1135 0.1002 -------Y 1453.096863 0 0.0000 9459 | 17/38
163 h-m-p 0.0011 0.5311 0.7110 C 1453.096845 0 0.0017 9521 | 17/38
164 h-m-p 0.0090 2.6207 0.1300 -------------.. | 17/38
165 h-m-p 0.0000 0.0000 1537058.1625 ----YCYYCYCCC 1449.095556 8 0.0000 9672 | 17/38
166 h-m-p 0.0000 0.0001 49.9607 YYC 1449.074215 2 0.0000 9715 | 17/38
167 h-m-p 0.0001 0.0011 11.7271 YC 1449.071940 1 0.0000 9757 | 17/38
168 h-m-p 0.0000 0.0020 9.5981 YC 1449.071157 1 0.0000 9799 | 17/38
169 h-m-p 0.0000 0.0030 5.8508 CC 1449.070588 1 0.0001 9842 | 17/38
170 h-m-p 0.0001 0.0146 5.3675 CC 1449.069949 1 0.0001 9885 | 17/38
171 h-m-p 0.0002 0.0192 1.9764 YC 1449.069802 1 0.0001 9927 | 17/38
172 h-m-p 0.0000 0.0060 9.8798 YC 1449.069491 1 0.0000 9969 | 17/38
173 h-m-p 0.0001 0.0212 3.3132 YC 1449.069055 1 0.0002 10011 | 17/38
174 h-m-p 0.0001 0.0052 11.0736 YC 1449.068337 1 0.0001 10053 | 17/38
175 h-m-p 0.0000 0.0015 34.7531 C 1449.067568 0 0.0000 10094 | 17/38
176 h-m-p 0.0000 0.0013 37.6569 C 1449.066757 0 0.0000 10135 | 17/38
177 h-m-p 0.0002 0.0045 9.5711 C 1449.066508 0 0.0001 10176 | 17/38
178 h-m-p 0.0002 0.0115 3.2377 CC 1449.066176 1 0.0002 10219 | 17/38
179 h-m-p 0.0001 0.0040 9.4021 C 1449.066112 0 0.0000 10260 | 17/38
180 h-m-p 0.0001 0.0639 1.2858 +YC 1449.065974 1 0.0004 10303 | 17/38
181 h-m-p 0.0001 0.0324 15.2880 +C 1449.064811 0 0.0003 10345 | 17/38
182 h-m-p 0.0001 0.0015 52.5644 CC 1449.064378 1 0.0000 10388 | 17/38
183 h-m-p 0.0002 0.1099 49.3928 +++YCCCC 1448.600554 4 0.0289 10439 | 17/38
184 h-m-p 0.0000 0.0002 8460.4963 YYC 1448.516902 2 0.0000 10482 | 17/38
185 h-m-p 0.0003 0.0014 84.8225 -YC 1448.516583 1 0.0000 10525 | 17/38
186 h-m-p 0.0160 8.0000 0.1955 ++YC 1448.509225 1 0.5659 10569 | 17/38
187 h-m-p 1.6000 8.0000 0.0039 YC 1448.508969 1 0.8562 10632 | 17/38
188 h-m-p 1.6000 8.0000 0.0006 Y 1448.508967 0 0.8495 10694 | 17/38
189 h-m-p 1.6000 8.0000 0.0000 Y 1448.508967 0 0.7479 10756 | 17/38
190 h-m-p 1.6000 8.0000 0.0000 Y 1448.508967 0 0.7814 10818 | 17/38
191 h-m-p 0.4685 8.0000 0.0000 +Y 1448.508967 0 1.3394 10881 | 17/38
192 h-m-p 1.4293 8.0000 0.0000 Y 1448.508967 0 3.0811 10943 | 17/38
193 h-m-p 1.6000 8.0000 0.0000 ++ 1448.508967 m 8.0000 11005 | 17/38
194 h-m-p 1.6000 8.0000 0.0000 +Y 1448.508965 0 6.9635 11068 | 17/38
195 h-m-p 1.6000 8.0000 0.0002 Y 1448.508963 0 2.7630 11130 | 17/38
196 h-m-p 1.6000 8.0000 0.0000 C 1448.508963 0 1.5348 11192 | 17/38
197 h-m-p 1.6000 8.0000 0.0000 ---Y 1448.508963 0 0.0063 11257 | 17/38
198 h-m-p 0.0160 8.0000 0.0000 -C 1448.508963 0 0.0010 11320
Out..
lnL = -1448.508963
11321 lfun, 33963 eigenQcodon, 792470 P(t)
end of tree file.
Time used: 4:33
Model 2: PositiveSelection
TREE # 1
(12, 16, 8, 10, 15, 20, (11, 13, 17, 18, ((((22, 14), 7), 23), 1, 6), 21, 27, 26, 4, 30, 3, 2, 5, 19, 25, 24, 9, 29, 28)); MP score: 61
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
32
0.017253 0.036930 0.020962 0.017898 0.045987 0.011371 0.101184 0.109766 0.074564 0.103272 0.038018 0.098905 0.072250 0.053219 0.024365 0.065538 0.064355 0.084315 0.062890 0.065496 0.065043 0.107178 0.026713 0.038289 0.106131 0.079144 0.105931 0.087351 0.035325 0.072344 0.050928 0.074636 0.032329 0.080370 0.098389 3.827808 1.167626 0.381310 0.332766 1.380534
ntime & nrate & np: 35 3 40
Bounds (np=40):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 3.495177
np = 40
lnL0 = -1859.645379
Iterating by ming2
Initial: fx= 1859.645379
x= 0.01725 0.03693 0.02096 0.01790 0.04599 0.01137 0.10118 0.10977 0.07456 0.10327 0.03802 0.09890 0.07225 0.05322 0.02436 0.06554 0.06436 0.08431 0.06289 0.06550 0.06504 0.10718 0.02671 0.03829 0.10613 0.07914 0.10593 0.08735 0.03532 0.07234 0.05093 0.07464 0.03233 0.08037 0.09839 3.82781 1.16763 0.38131 0.33277 1.38053
1 h-m-p 0.0000 0.0001 1094.3630 ++ 1792.364731 m 0.0001 45 | 1/40
2 h-m-p 0.0000 0.0000 34432.4173 ++ 1760.820232 m 0.0000 88 | 2/40
3 h-m-p 0.0000 0.0000 2532.6892 ++ 1757.420305 m 0.0000 131 | 3/40
4 h-m-p 0.0000 0.0001 460.1445 ++ 1744.781126 m 0.0001 174 | 4/40
5 h-m-p 0.0000 0.0001 576.8644 ++ 1721.300824 m 0.0001 217 | 5/40
6 h-m-p 0.0000 0.0000 5221.8169 ++ 1699.171280 m 0.0000 260 | 6/40
7 h-m-p 0.0000 0.0000 157695.5466 ++ 1687.936841 m 0.0000 303 | 7/40
8 h-m-p 0.0000 0.0000 5655.9174 ++ 1678.607821 m 0.0000 346 | 8/40
9 h-m-p 0.0000 0.0000 5452.5184 ++ 1677.743251 m 0.0000 389 | 9/40
10 h-m-p 0.0000 0.0000 104070.2453 ++ 1640.373592 m 0.0000 432 | 10/40
11 h-m-p 0.0000 0.0000 61489.8812 ++ 1597.254515 m 0.0000 475 | 11/40
12 h-m-p 0.0000 0.0000 48384.2822 ++ 1592.694430 m 0.0000 518 | 12/40
13 h-m-p 0.0000 0.0000 10562.6236 ++ 1586.370906 m 0.0000 561 | 13/40
14 h-m-p 0.0000 0.0000 11521.6452 ++ 1574.753147 m 0.0000 604 | 14/40
15 h-m-p 0.0000 0.0000 4501.2918 ++ 1563.241837 m 0.0000 647 | 15/40
16 h-m-p 0.0000 0.0000 3698.0334 ++ 1542.895179 m 0.0000 690 | 16/40
17 h-m-p 0.0000 0.0000 2099.2311 ++ 1542.086589 m 0.0000 733 | 17/40
18 h-m-p 0.0000 0.0002 309.6081 +++ 1513.526133 m 0.0002 777 | 17/40
19 h-m-p 0.0000 0.0000 2885.0054 +YYYCCC 1511.557911 5 0.0000 828 | 17/40
20 h-m-p 0.0000 0.0000 1543.4780 +YYYCCC 1508.555855 5 0.0000 879 | 17/40
21 h-m-p 0.0000 0.0000 787.6092 +YYCCCC 1506.816838 5 0.0000 931 | 17/40
22 h-m-p 0.0000 0.0000 1290.6149 +YYCYCC 1503.737889 5 0.0000 982 | 17/40
23 h-m-p 0.0000 0.0000 1039.9177 YCCCC 1502.993677 4 0.0000 1032 | 17/40
24 h-m-p 0.0000 0.0000 736.5224 +YCYCCC 1502.263037 5 0.0000 1084 | 17/40
25 h-m-p 0.0000 0.0000 351.0488 +YYCCCC 1500.601347 5 0.0000 1136 | 17/40
26 h-m-p 0.0000 0.0001 239.4738 +YYYCCC 1498.962630 5 0.0000 1187 | 17/40
27 h-m-p 0.0000 0.0002 334.0774 +YYYCYCYC 1492.303269 7 0.0001 1241 | 17/40
28 h-m-p 0.0001 0.0003 198.8998 +YCYCCC 1490.158367 5 0.0002 1293 | 17/40
29 h-m-p 0.0002 0.0009 202.9082 +YYYCCCCC 1482.492951 7 0.0007 1348 | 17/40
30 h-m-p 0.0002 0.0011 36.5659 YCYCCC 1481.734380 5 0.0006 1399 | 17/40
31 h-m-p 0.0003 0.0037 77.9792 ++ 1473.799299 m 0.0037 1442 | 18/40
32 h-m-p 0.0009 0.0043 44.6145 ++ 1468.144850 m 0.0043 1485 | 19/40
33 h-m-p 0.0071 0.0398 24.5144 YCCC 1466.434873 3 0.0159 1533 | 19/40
34 h-m-p 0.0218 0.1092 5.2384 +YYCCCC 1456.205930 5 0.0717 1585 | 19/40
35 h-m-p 0.0364 0.1819 0.9275 +YCYCCC 1454.807350 5 0.1081 1637 | 19/40
36 h-m-p 0.0001 0.0006 110.9026 ----------.. | 19/40
37 h-m-p 0.0000 0.0001 20414.0317 -CYCYYCCC 1451.405873 7 0.0000 1764 | 19/40
38 h-m-p 0.0000 0.0001 322.0797 YCCC 1450.560466 3 0.0000 1812 | 19/40
39 h-m-p 0.0000 0.0000 191.8449 YCYCCC 1450.219268 5 0.0000 1863 | 19/40
40 h-m-p 0.0000 0.0005 137.3211 +YYC 1449.634710 2 0.0001 1909 | 19/40
41 h-m-p 0.0000 0.0001 216.1360 CCCC 1449.422720 3 0.0000 1958 | 19/40
42 h-m-p 0.0000 0.0003 119.6817 YCC 1449.323868 2 0.0000 2004 | 19/40
43 h-m-p 0.0002 0.0014 21.1674 YC 1449.317500 1 0.0000 2048 | 19/40
44 h-m-p 0.0000 0.0012 21.2114 CC 1449.312540 1 0.0000 2093 | 19/40
45 h-m-p 0.0001 0.0017 13.0275 CC 1449.309802 1 0.0001 2138 | 19/40
46 h-m-p 0.0000 0.0017 17.2455 YC 1449.308146 1 0.0000 2182 | 19/40
47 h-m-p 0.0001 0.0068 7.5911 CC 1449.306870 1 0.0001 2227 | 19/40
48 h-m-p 0.0001 0.0025 11.0322 C 1449.305688 0 0.0001 2270 | 19/40
49 h-m-p 0.0000 0.0029 32.0061 +C 1449.301143 0 0.0001 2314 | 19/40
50 h-m-p 0.0001 0.0030 36.7431 YC 1449.292359 1 0.0001 2358 | 19/40
51 h-m-p 0.0001 0.0031 98.8542 CCC 1449.281604 2 0.0001 2405 | 19/40
52 h-m-p 0.0000 0.0007 254.4631 +YC 1449.250702 1 0.0001 2450 | 19/40
53 h-m-p 0.0001 0.0028 395.8383 ++YYC 1448.855229 2 0.0006 2497 | 19/40
54 h-m-p 0.0001 0.0004 1471.8342 CYC 1448.797176 2 0.0000 2543 | 19/40
55 h-m-p 0.0034 0.0169 0.6215 --Y 1448.797165 0 0.0000 2588 | 18/40
56 h-m-p 0.0002 0.0803 12.4608 YC 1448.771659 1 0.0003 2653 | 18/40
57 h-m-p 0.0245 2.4229 0.1760 ++YCCCC 1448.638104 4 0.8346 2705 | 18/40
58 h-m-p 1.5613 8.0000 0.0941 YC 1448.564065 1 2.9362 2771 | 18/40
59 h-m-p 1.6000 8.0000 0.1047 CC 1448.520141 1 1.8080 2838 | 18/40
60 h-m-p 1.6000 8.0000 0.0569 YC 1448.511645 1 1.0663 2904 | 18/40
61 h-m-p 1.6000 8.0000 0.0291 YC 1448.510390 1 1.2268 2970 | 18/40
62 h-m-p 1.6000 8.0000 0.0044 C 1448.510282 0 1.3681 3035 | 18/40
63 h-m-p 1.6000 8.0000 0.0022 ++ 1448.510092 m 8.0000 3100 | 18/40
64 h-m-p 1.6000 8.0000 0.0030 +YC 1448.509297 1 5.3870 3167 | 18/40
65 h-m-p 1.6000 8.0000 0.0054 C 1448.508981 0 1.5702 3232 | 18/40
66 h-m-p 1.6000 8.0000 0.0050 Y 1448.508963 0 1.0273 3297 | 18/40
67 h-m-p 1.6000 8.0000 0.0005 Y 1448.508963 0 0.8784 3362 | 18/40
68 h-m-p 1.6000 8.0000 0.0001 Y 1448.508963 0 1.0122 3427 | 18/40
69 h-m-p 1.6000 8.0000 0.0000 --C 1448.508963 0 0.0224 3494 | 18/40
70 h-m-p 0.0524 8.0000 0.0000 -C 1448.508963 0 0.0036 3560
Out..
lnL = -1448.508963
3561 lfun, 14244 eigenQcodon, 373905 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -1459.462651 S = -1421.776694 -35.503471
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 105 patterns 6:25
did 20 / 105 patterns 6:25
did 30 / 105 patterns 6:25
did 40 / 105 patterns 6:25
did 50 / 105 patterns 6:25
did 60 / 105 patterns 6:25
did 70 / 105 patterns 6:25
did 80 / 105 patterns 6:25
did 90 / 105 patterns 6:25
did 100 / 105 patterns 6:25
did 105 / 105 patterns 6:25end of tree file.
Time used: 6:25
Model 7: beta
TREE # 1
(12, 16, 8, 10, 15, 20, (11, 13, 17, 18, ((((22, 14), 7), 23), 1, 6), 21, 27, 26, 4, 30, 3, 2, 5, 19, 25, 24, 9, 29, 28)); MP score: 61
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
32
0.084884 0.092815 0.045027 0.076582 0.045478 0.064601 0.014849 0.048133 0.034242 0.103119 0.034219 0.059830 0.030282 0.055781 0.082122 0.030809 0.052779 0.036433 0.021519 0.022136 0.037331 0.022807 0.107266 0.048083 0.064138 0.059352 0.070120 0.057612 0.055243 0.088861 0.081507 0.047020 0.032994 0.011362 0.078730 3.827785 0.496630 1.969311
ntime & nrate & np: 35 1 38
Bounds (np=38):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 6.788685
np = 38
lnL0 = -1803.856203
Iterating by ming2
Initial: fx= 1803.856203
x= 0.08488 0.09281 0.04503 0.07658 0.04548 0.06460 0.01485 0.04813 0.03424 0.10312 0.03422 0.05983 0.03028 0.05578 0.08212 0.03081 0.05278 0.03643 0.02152 0.02214 0.03733 0.02281 0.10727 0.04808 0.06414 0.05935 0.07012 0.05761 0.05524 0.08886 0.08151 0.04702 0.03299 0.01136 0.07873 3.82778 0.49663 1.96931
1 h-m-p 0.0000 0.0001 1115.3882 ++ 1704.287143 m 0.0001 43 | 0/38
2 h-m-p 0.0000 0.0000 78059.1199 +CYCYYCCC 1693.338285 7 0.0000 96 | 0/38
3 h-m-p 0.0000 0.0000 58334.1645 ++ 1688.676856 m 0.0000 137 | 1/38
4 h-m-p 0.0000 0.0000 11935.2227 ++ 1684.144976 m 0.0000 178 | 2/38
5 h-m-p 0.0000 0.0000 113058.4712 ++ 1642.471991 m 0.0000 219 | 2/38
6 h-m-p -0.0000 -0.0000 52985.5321
h-m-p: -0.00000000e+00 -0.00000000e+00 5.29855321e+04 1642.471991
.. | 2/38
7 h-m-p 0.0000 0.0000 237000.9398 -YCYYCCC 1634.981120 6 0.0000 309 | 2/38
8 h-m-p 0.0000 0.0000 2174.5424 ++ 1625.886072 m 0.0000 350 | 3/38
9 h-m-p 0.0000 0.0000 1407.0275 ++ 1619.957887 m 0.0000 391 | 4/38
10 h-m-p 0.0000 0.0000 1146448.4011 ++ 1604.987004 m 0.0000 432 | 5/38
11 h-m-p 0.0000 0.0000 2109.2550 ++ 1570.859981 m 0.0000 473 | 6/38
12 h-m-p 0.0000 0.0000 1254.7440 ++ 1556.390078 m 0.0000 514 | 7/38
13 h-m-p 0.0000 0.0000 4460.4142 ++ 1531.055641 m 0.0000 555 | 8/38
14 h-m-p 0.0000 0.0000 3913.7608 ++ 1522.995654 m 0.0000 596 | 9/38
15 h-m-p 0.0000 0.0000 7284.8961 ++ 1517.650449 m 0.0000 637 | 10/38
16 h-m-p 0.0000 0.0000 4835.8751 ++ 1505.780348 m 0.0000 678 | 11/38
17 h-m-p 0.0000 0.0000 5467.5335 ++ 1505.738862 m 0.0000 719 | 12/38
18 h-m-p 0.0000 0.0000 4420.3665 ++ 1487.195541 m 0.0000 760 | 13/38
19 h-m-p 0.0000 0.0000 5502.5774 ++ 1480.816964 m 0.0000 801 | 14/38
20 h-m-p 0.0000 0.0000 1334.3132 ++ 1478.368656 m 0.0000 842 | 15/38
21 h-m-p 0.0000 0.0000 750.4706 ++ 1475.037430 m 0.0000 883 | 16/38
22 h-m-p 0.0000 0.0000 1203.4174 ++ 1468.507204 m 0.0000 924 | 17/38
23 h-m-p 0.0000 0.0002 88.5176 +YYCYCC 1467.606854 5 0.0001 973 | 17/38
24 h-m-p 0.0003 0.0015 40.3894 YCCCC 1466.811512 4 0.0006 1021 | 17/38
25 h-m-p 0.0002 0.0013 113.4610 +YYYYCCCC 1463.322602 7 0.0008 1073 | 17/38
26 h-m-p 0.0000 0.0002 357.9392 +YYCYC 1461.400080 4 0.0001 1120 | 17/38
27 h-m-p 0.0000 0.0001 393.5833 +YCYCCC 1460.752717 5 0.0001 1170 | 17/38
28 h-m-p 0.0002 0.0016 103.4855 +CYYYCC 1457.446548 5 0.0011 1219 | 17/38
29 h-m-p 0.0001 0.0004 622.4521 YCYCCC 1454.687615 5 0.0002 1268 | 17/38
30 h-m-p 0.0018 0.0092 4.4890 YCCCC 1454.309292 4 0.0037 1316 | 17/38
31 h-m-p 0.0045 0.0258 3.6502 CCCC 1454.160158 3 0.0052 1363 | 17/38
32 h-m-p 0.0028 0.0331 6.6182 +CYYYC 1452.830364 4 0.0209 1410 | 17/38
33 h-m-p 0.0777 0.3884 1.7103 YCCC 1451.798327 3 0.1317 1456 | 17/38
34 h-m-p 0.1389 0.6946 0.1768 CCCC 1451.451643 3 0.2202 1503 | 17/38
35 h-m-p 0.0695 0.3475 0.3464 CCC 1451.147186 2 0.0780 1569 | 17/38
36 h-m-p 0.1591 3.5130 0.1699 YCCC 1450.780479 3 0.2813 1636 | 17/38
37 h-m-p 0.1851 2.7014 0.2581 +CCCCC 1449.763150 4 0.9508 1707 | 17/38
38 h-m-p 0.3314 1.6568 0.0979 CCCC 1449.451137 3 0.5299 1775 | 17/38
39 h-m-p 0.2304 1.1520 0.0228 YCCC 1449.351763 3 0.1426 1842 | 17/38
40 h-m-p 0.0814 0.8948 0.0399 +YYYYCCCC 1449.077323 7 0.3456 1915 | 17/38
41 h-m-p 0.1917 8.0000 0.0719 +CC 1448.971719 1 0.8941 1980 | 17/38
42 h-m-p 0.3496 4.3862 0.1840 +YCCC 1448.895841 3 0.9120 2048 | 17/38
43 h-m-p 1.2271 6.1353 0.1264 YCC 1448.864650 2 0.7968 2113 | 17/38
44 h-m-p 0.9300 8.0000 0.1083 YC 1448.851277 1 0.5431 2176 | 17/38
45 h-m-p 0.4169 8.0000 0.1411 +CC 1448.821458 1 1.7864 2241 | 17/38
46 h-m-p 0.9478 7.9121 0.2659 +YY 1448.716023 1 3.0868 2305 | 17/38
47 h-m-p 0.1521 0.7604 1.6874 CYCYC 1448.671817 4 0.2707 2373 | 17/38
48 h-m-p 0.1861 0.9305 0.6597 YCCCC 1448.643909 4 0.2497 2421 | 17/38
49 h-m-p 1.2591 8.0000 0.1308 YC 1448.620552 1 0.7121 2484 | 17/38
50 h-m-p 0.5910 4.4928 0.1576 C 1448.613637 0 0.5919 2546 | 17/38
51 h-m-p 1.6000 8.0000 0.0419 YC 1448.611128 1 0.7505 2609 | 17/38
52 h-m-p 1.6000 8.0000 0.0174 C 1448.609673 0 1.6498 2671 | 17/38
53 h-m-p 1.6000 8.0000 0.0048 ++ 1448.601082 m 8.0000 2733 | 17/38
54 h-m-p 1.5894 8.0000 0.0240 YCC 1448.579967 2 3.0182 2798 | 17/38
55 h-m-p 1.2605 8.0000 0.0576 YC 1448.564358 1 2.1806 2861 | 17/38
56 h-m-p 1.6000 8.0000 0.0382 YC 1448.546163 1 3.5549 2924 | 17/38
57 h-m-p 1.6000 8.0000 0.0068 ++ 1448.428693 m 8.0000 2986 | 17/38
58 h-m-p 0.3937 4.8869 0.1391 +YYC 1448.380207 2 1.2635 3051 | 17/38
59 h-m-p 1.6000 8.0000 0.0600 C 1448.365269 0 1.6562 3113 | 17/38
60 h-m-p 1.6000 8.0000 0.0334 YC 1448.345817 1 3.6625 3176 | 17/38
61 h-m-p 1.6000 8.0000 0.0359 CYC 1448.328182 2 1.7961 3241 | 17/38
62 h-m-p 1.6000 8.0000 0.0371 YC 1448.325363 1 0.9721 3304 | 17/38
63 h-m-p 1.6000 8.0000 0.0056 YC 1448.325225 1 1.0124 3367 | 17/38
64 h-m-p 1.6000 8.0000 0.0000 Y 1448.325223 0 0.9849 3429 | 17/38
65 h-m-p 0.4547 8.0000 0.0001 C 1448.325223 0 0.7015 3491 | 17/38
66 h-m-p 1.2531 8.0000 0.0000 Y 1448.325223 0 0.5069 3553 | 17/38
67 h-m-p 0.9430 8.0000 0.0000 C 1448.325223 0 0.3702 3615 | 17/38
68 h-m-p 0.5924 8.0000 0.0000 C 1448.325223 0 0.1481 3677 | 17/38
69 h-m-p 0.1766 8.0000 0.0000 ---------------.. | 17/38
70 h-m-p 0.0021 1.0373 0.0059 ------------ | 17/38
71 h-m-p 0.0021 1.0373 0.0059 ------------
Out..
lnL = -1448.325223
3897 lfun, 42867 eigenQcodon, 1363950 P(t)
end of tree file.
Time used: 14:14
Model 8: beta&w>1
TREE # 1
(12, 16, 8, 10, 15, 20, (11, 13, 17, 18, ((((22, 14), 7), 23), 1, 6), 21, 27, 26, 4, 30, 3, 2, 5, 19, 25, 24, 9, 29, 28)); MP score: 61
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
32
0.043672 0.105323 0.043720 0.031270 0.028089 0.096222 0.073912 0.050190 0.013633 0.012457 0.098127 0.023093 0.108286 0.105032 0.044884 0.097033 0.075667 0.062699 0.082578 0.068505 0.024576 0.073307 0.056432 0.051774 0.014847 0.103406 0.044113 0.045930 0.077947 0.075806 0.065922 0.067870 0.025761 0.099773 0.060527 3.795406 0.900000 1.033773 1.859919 1.300000
ntime & nrate & np: 35 2 40
Bounds (np=40):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 4.604149
np = 40
lnL0 = -1821.965684
Iterating by ming2
Initial: fx= 1821.965684
x= 0.04367 0.10532 0.04372 0.03127 0.02809 0.09622 0.07391 0.05019 0.01363 0.01246 0.09813 0.02309 0.10829 0.10503 0.04488 0.09703 0.07567 0.06270 0.08258 0.06851 0.02458 0.07331 0.05643 0.05177 0.01485 0.10341 0.04411 0.04593 0.07795 0.07581 0.06592 0.06787 0.02576 0.09977 0.06053 3.79541 0.90000 1.03377 1.85992 1.30000
1 h-m-p 0.0000 0.0001 1008.1376 ++ 1744.947153 m 0.0001 85 | 1/40
2 h-m-p 0.0000 0.0000 66289.0045 ++ 1695.762632 m 0.0000 168 | 2/40
3 h-m-p 0.0000 0.0000 106021.1698 ++ 1691.832122 m 0.0000 250 | 3/40
4 h-m-p 0.0000 0.0000 25673.9404 ++ 1666.628769 m 0.0000 331 | 4/40
5 h-m-p 0.0000 0.0000 41926.6400 ++ 1613.703605 m 0.0000 411 | 5/40
6 h-m-p 0.0000 0.0000 7968.1902 ++ 1613.509860 m 0.0000 490 | 6/40
7 h-m-p 0.0000 0.0000 6047.6019 ++ 1606.135936 m 0.0000 568 | 7/40
8 h-m-p 0.0000 0.0000 3476.8675 ++ 1589.396746 m 0.0000 645 | 8/40
9 h-m-p 0.0000 0.0000 5011.3546 ++ 1576.359033 m 0.0000 721 | 9/40
10 h-m-p 0.0000 0.0000 4940.8820 ++ 1549.768308 m 0.0000 796 | 10/40
11 h-m-p 0.0000 0.0000 2135.2044 ++ 1531.764705 m 0.0000 870 | 11/40
12 h-m-p 0.0000 0.0000 1581.5469 ++ 1526.225014 m 0.0000 943 | 12/40
13 h-m-p 0.0000 0.0000 1622.9123 ++ 1521.982301 m 0.0000 1015 | 13/40
14 h-m-p 0.0000 0.0000 4572.0965 ++ 1504.300485 m 0.0000 1086 | 14/40
15 h-m-p 0.0000 0.0000 3028.8847 ++ 1497.233493 m 0.0000 1156 | 15/40
16 h-m-p 0.0000 0.0000 2412.5639 ++ 1495.517252 m 0.0000 1225 | 16/40
17 h-m-p 0.0000 0.0000 649.7371 ++ 1493.544450 m 0.0000 1293 | 17/40
18 h-m-p 0.0000 0.0002 160.0027 +YCYYCCC 1486.924082 6 0.0002 1371 | 17/40
19 h-m-p 0.0000 0.0001 410.7061 YCYCCC 1484.948882 5 0.0000 1445 | 17/40
20 h-m-p 0.0001 0.0006 62.7056 CCCC 1484.464688 3 0.0002 1517 | 17/40
21 h-m-p 0.0001 0.0004 115.1525 YCCCC 1483.768090 4 0.0001 1590 | 17/40
22 h-m-p 0.0001 0.0006 153.9113 YCCCC 1482.108616 4 0.0002 1663 | 17/40
23 h-m-p 0.0001 0.0003 176.7097 +YYCYC 1480.172474 4 0.0002 1735 | 17/40
24 h-m-p 0.0000 0.0001 337.3594 +YYYCCC 1478.057008 5 0.0001 1809 | 17/40
25 h-m-p 0.0001 0.0007 57.7574 CYCCC 1477.527714 4 0.0003 1882 | 17/40
26 h-m-p 0.0003 0.0015 58.8436 +YYYCCC 1475.852717 5 0.0010 1956 | 17/40
27 h-m-p 0.0006 0.0028 64.6471 +YYYCYCCC 1471.557018 7 0.0024 2033 | 17/40
28 h-m-p 0.0000 0.0000 1363.6677 YCYCCC 1471.159026 5 0.0000 2107 | 17/40
29 h-m-p 0.0000 0.0001 1788.8257 ++ 1465.966904 m 0.0001 2173 | 18/40
30 h-m-p 0.0000 0.0001 233.4418 ++ 1465.303584 m 0.0001 2239 | 19/40
31 h-m-p 0.0000 0.0006 1031.4156 ++YYCCCCCC 1455.873128 7 0.0005 2319 | 19/40
32 h-m-p 0.0056 0.0281 2.8408 YYC 1455.725786 2 0.0046 2385 | 19/40
33 h-m-p 0.0084 0.2276 1.5651 +YCCCC 1454.981606 4 0.0685 2457 | 19/40
34 h-m-p 0.0094 0.0471 6.4357 CCCC 1454.479048 3 0.0137 2527 | 19/40
35 h-m-p 0.0239 0.2565 3.6857 +YYC 1453.263024 2 0.0822 2594 | 19/40
36 h-m-p 0.2207 1.1036 0.4300 YCCCCC 1452.865247 5 0.2409 2667 | 18/40
37 h-m-p 0.0301 0.1507 2.4827 -CC 1452.863405 1 0.0021 2734 | 18/40
38 h-m-p 0.0209 0.5483 0.2491 +YC 1452.811098 1 0.0543 2801 | 18/40
39 h-m-p 0.0680 3.4793 0.1986 +CYC 1452.669745 2 0.3576 2870 | 18/40
40 h-m-p 0.2090 1.5168 0.3400 +CCC 1452.535801 2 0.7468 2940 | 18/40
41 h-m-p 0.6067 8.0000 0.4185 YCCC 1452.340333 3 1.2362 3010 | 18/40
42 h-m-p 1.0527 8.0000 0.4914 YCC 1452.026209 2 2.3481 3078 | 18/40
43 h-m-p 0.4972 2.4862 0.8487 YCCC 1451.891883 3 0.9608 3148 | 18/40
44 h-m-p 0.6540 3.2698 1.0656 CYC 1451.795929 2 0.6107 3216 | 18/40
45 h-m-p 0.9800 8.0000 0.6641 CC 1451.736746 1 1.3073 3283 | 18/40
46 h-m-p 1.6000 8.0000 0.4476 CC 1451.715327 1 1.6113 3350 | 18/40
47 h-m-p 1.6000 8.0000 0.3827 YC 1451.709081 1 1.0489 3416 | 18/40
48 h-m-p 0.8258 8.0000 0.4862 CC 1451.705484 1 0.7654 3483 | 18/40
49 h-m-p 1.6000 8.0000 0.2288 CC 1451.704963 1 0.5093 3550 | 18/40
50 h-m-p 1.1494 8.0000 0.1014 ---------------C 1451.704963 0 0.0000 3630 | 18/40
51 h-m-p 0.0160 8.0000 0.0216 ++YC 1451.704846 1 0.4954 3698 | 18/40
52 h-m-p 1.0772 8.0000 0.0099 ----------Y 1451.704846 0 0.0000 3773 | 18/40
53 h-m-p 0.0160 8.0000 0.1354 -C 1451.704846 0 0.0012 3839 | 18/40
54 h-m-p 0.0232 8.0000 0.0072 ------------Y 1451.704846 0 0.0000 3916 | 18/40
55 h-m-p 0.0160 8.0000 0.0004 -------------.. | 18/40
56 h-m-p 0.0000 0.0001 23804.1980 -CCYYYYCCCC 1448.646401 9 0.0000 4072 | 18/40
57 h-m-p 0.0000 0.0001 70.6055 YYYC 1448.603720 3 0.0000 4140 | 18/40
58 h-m-p 0.0002 0.0018 6.1388 -YC 1448.603301 1 0.0000 4207 | 18/40
59 h-m-p 0.0000 0.0044 3.8857 C 1448.603112 0 0.0000 4272 | 18/40
60 h-m-p 0.0000 0.0216 3.5635 +YC 1448.602595 1 0.0001 4339 | 18/40
61 h-m-p 0.0001 0.0070 5.8913 C 1448.602152 0 0.0001 4404 | 18/40
62 h-m-p 0.0001 0.0065 5.1589 C 1448.601723 0 0.0001 4469 | 18/40
63 h-m-p 0.0000 0.0028 35.8664 +YC 1448.598038 1 0.0001 4536 | 18/40
64 h-m-p 0.0002 0.0035 34.8667 YC 1448.595472 1 0.0001 4602 | 18/40
65 h-m-p 0.0001 0.0039 32.9518 CC 1448.593410 1 0.0001 4669 | 18/40
66 h-m-p 0.0000 0.0013 98.5763 YC 1448.589198 1 0.0001 4735 | 18/40
67 h-m-p 0.0000 0.0020 222.7328 +YC 1448.577806 1 0.0001 4802 | 18/40
68 h-m-p 0.0001 0.0022 166.6682 YC 1448.558461 1 0.0002 4868 | 18/40
69 h-m-p 0.0001 0.0019 208.3150 YCC 1448.529750 2 0.0002 4936 | 18/40
70 h-m-p 0.0000 0.0002 1440.1778 CCC 1448.498700 2 0.0000 5005 | 18/40
71 h-m-p 0.0004 0.0029 105.1968 CC 1448.488940 1 0.0001 5072 | 18/40
72 h-m-p 0.0001 0.0006 158.6459 YC 1448.487125 1 0.0000 5138 | 18/40
73 h-m-p 0.0002 0.0027 12.4616 -YC 1448.486934 1 0.0000 5205 | 18/40
74 h-m-p 0.0008 0.0862 0.4076 --C 1448.486933 0 0.0000 5272 | 18/40
75 h-m-p 0.0025 1.2292 0.0507 Y 1448.486896 0 0.0047 5337 | 18/40
76 h-m-p 0.0009 0.4495 8.7923 +CC 1448.479316 1 0.0056 5405 | 18/40
77 h-m-p 1.6000 8.0000 0.0208 YC 1448.478743 1 1.0372 5471 | 18/40
78 h-m-p 1.6000 8.0000 0.0033 C 1448.478724 0 2.2172 5536 | 18/40
79 h-m-p 1.1776 8.0000 0.0061 ++ 1448.478594 m 8.0000 5601 | 18/40
80 h-m-p 0.1470 8.0000 0.3336 ++Y 1448.477648 0 2.3526 5668 | 18/40
81 h-m-p 1.6000 8.0000 0.3469 ++ 1448.462917 m 8.0000 5733 | 18/40
82 h-m-p 0.5955 8.0000 4.6608 ----------------.. | 18/40
83 h-m-p 0.0000 0.0008 7.1395 CC 1448.462556 1 0.0000 5879 | 18/40
84 h-m-p 0.0004 0.2148 0.9724 Y 1448.462527 0 0.0001 5944 | 18/40
85 h-m-p 0.0001 0.0328 0.7974 Y 1448.462516 0 0.0000 6009 | 18/40
86 h-m-p 0.0001 0.0229 0.5924 C 1448.462513 0 0.0000 6074 | 18/40
87 h-m-p 0.0001 0.0712 0.3349 C 1448.462512 0 0.0000 6139 | 18/40
88 h-m-p 0.0014 0.6897 0.0795 -Y 1448.462512 0 0.0002 6205 | 18/40
89 h-m-p 0.0005 0.2522 0.1779 C 1448.462511 0 0.0001 6270 | 18/40
90 h-m-p 0.0002 0.0817 0.7025 Y 1448.462510 0 0.0000 6335 | 18/40
91 h-m-p 0.0009 0.4496 0.3151 C 1448.462509 0 0.0002 6400 | 18/40
92 h-m-p 0.0003 0.1500 0.9577 C 1448.462506 0 0.0001 6465 | 18/40
93 h-m-p 0.0003 0.1372 1.4021 Y 1448.462502 0 0.0001 6530 | 18/40
94 h-m-p 0.0001 0.0283 1.7720 C 1448.462501 0 0.0000 6595 | 18/40
95 h-m-p 0.0007 0.3724 0.9268 Y 1448.462463 0 0.0018 6660 | 18/40
96 h-m-p 0.0002 0.0236 10.2933 C 1448.462449 0 0.0001 6725 | 18/40
97 h-m-p 0.0001 0.0254 12.1950 Y 1448.462414 0 0.0001 6790 | 18/40
98 h-m-p 0.0000 0.0047 73.2933 +Y 1448.462305 0 0.0001 6856 | 18/40
99 h-m-p 0.0353 0.4040 0.1333 ---C 1448.462304 0 0.0001 6924 | 18/40
100 h-m-p 0.0003 0.1553 0.8847 Y 1448.462302 0 0.0001 6989 | 18/40
101 h-m-p 0.0013 0.6568 5.9849 +YC 1448.461286 1 0.0090 7056 | 18/40
102 h-m-p 0.0110 0.0551 1.1466 ----C 1448.461286 0 0.0000 7125 | 18/40
103 h-m-p 0.0160 8.0000 0.0084 +++YC 1448.461206 1 2.3623 7194 | 18/40
104 h-m-p 0.0000 0.0032 1481.4067 +++YYYYYYYC 1448.450136 7 0.0009 7269 | 18/40
105 h-m-p 0.0208 0.1040 30.9660 YCCCC 1448.445752 4 0.0298 7341 | 18/40
106 h-m-p 0.3257 8.0000 2.8302 ---------------.. | 18/40
107 h-m-p 0.0000 0.0007 9.1625 YC 1448.445056 1 0.0000 7485 | 18/40
108 h-m-p 0.0000 0.0100 4.3345 +YC 1448.444225 1 0.0001 7552 | 18/40
109 h-m-p 0.0000 0.0081 12.2356 +YC 1448.442160 1 0.0001 7619 | 18/40
110 h-m-p 0.0002 0.0016 8.0115 YC 1448.441931 1 0.0000 7685 | 18/40
111 h-m-p 0.0001 0.0488 4.4882 CC 1448.441585 1 0.0001 7752 | 18/40
112 h-m-p 0.0001 0.0263 2.6607 CC 1448.441266 1 0.0002 7819 | 18/40
113 h-m-p 0.0001 0.0092 4.8731 YC 1448.441126 1 0.0000 7885 | 18/40
114 h-m-p 0.0000 0.0141 4.9343 C 1448.441023 0 0.0000 7950 | 18/40
115 h-m-p 0.0000 0.0145 6.4808 +C 1448.440606 0 0.0001 8016 | 18/40
116 h-m-p 0.0001 0.0053 15.8773 +YC 1448.437217 1 0.0005 8083 | 18/40
117 h-m-p 0.0002 0.0016 46.4418 CC 1448.436072 1 0.0001 8150 | 18/40
118 h-m-p 0.0000 0.0008 92.1909 YC 1448.433680 1 0.0001 8216 | 18/40
119 h-m-p 0.0001 0.0008 78.9326 CC 1448.430335 1 0.0001 8283 | 18/40
120 h-m-p 0.0003 0.0023 25.4667 -YC 1448.429979 1 0.0000 8350 | 18/40
121 h-m-p 0.0001 0.0044 7.1051 C 1448.429904 0 0.0000 8415 | 18/40
122 h-m-p 0.0000 0.0170 3.9990 YC 1448.429781 1 0.0001 8481 | 18/40
123 h-m-p 0.0062 0.2590 0.0520 ---Y 1448.429781 0 0.0000 8549 | 18/40
124 h-m-p 0.0008 0.4096 0.0543 Y 1448.429781 0 0.0001 8614 | 18/40
125 h-m-p 0.0158 7.8816 0.3368 ++YC 1448.428473 1 0.2172 8682 | 18/40
126 h-m-p 0.0001 0.0010 1023.7551 C 1448.428172 0 0.0000 8747 | 18/40
127 h-m-p 0.1042 0.5209 0.0745 ---C 1448.428172 0 0.0005 8815 | 18/40
128 h-m-p 0.0021 1.0317 2.3349 +++CYYCC 1448.413384 4 0.2932 8890 | 18/40
129 h-m-p 0.2973 1.4865 1.1547 YYYYY 1448.406302 4 0.2973 8959 | 18/40
130 h-m-p 0.1937 0.9685 1.3321 YCYC 1448.375817 3 0.4935 9028 | 18/40
131 h-m-p 0.1074 0.5371 0.7760 YYC 1448.369854 2 0.0826 9095 | 18/40
132 h-m-p 0.4583 3.7915 0.1398 +CY 1448.345885 1 1.7951 9163 | 18/40
133 h-m-p 0.4604 2.3020 0.1446 CYC 1448.339642 2 0.8153 9231 | 18/40
134 h-m-p 0.0701 0.3506 0.0944 ++ 1448.328113 m 0.3506 9296 | 19/40
135 h-m-p 0.4144 8.0000 0.0783 C 1448.328003 0 0.1069 9361 | 19/40
136 h-m-p 0.2043 8.0000 0.0409 -------------C 1448.328003 0 0.0000 9438 | 19/40
137 h-m-p 0.0068 3.3984 0.1984 +++YC 1448.326581 1 0.2924 9506 | 19/40
138 h-m-p 1.6000 8.0000 0.0055 YC 1448.326553 1 0.8054 9571 | 19/40
139 h-m-p 1.6000 8.0000 0.0001 ----------Y 1448.326553 0 0.0000 9645
Out..
lnL = -1448.326553
9646 lfun, 115752 eigenQcodon, 3713710 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -1460.692703 S = -1421.883797 -56.742957
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 105 patterns 36:05
did 20 / 105 patterns 36:05
did 30 / 105 patterns 36:06
did 40 / 105 patterns 36:06
did 50 / 105 patterns 36:06
did 60 / 105 patterns 36:07
did 70 / 105 patterns 36:07
did 80 / 105 patterns 36:07
did 90 / 105 patterns 36:07
did 100 / 105 patterns 36:08
did 105 / 105 patterns 36:08end of tree file.
Time used: 36:08
The loglikelihoods for models M1, M2, M7 and M8 are -1448.508963 -1448.508963 -1448.325223 -1448.326553 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
PC22A_P20_nsp3_VIPR_ALG4_APX55516_1_10181_11020_1_2013_10_01_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
USA_Texas128_2013_nsp3_VIPR_ALG4_658130673_10155_10994_1_2013_11_12_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
USA_Oklahoma477_2014_nsp3_VIPR_ALG4_825144888_10145_10984_1_2014_12_12_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
USA_Minnesota289_2014_nsp3_VIPR_ALG4_825144643_10145_10984_1_2014_04_02_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
OH10123_14_nsp3_VIPR_ALG4_946969657_10190_11029_1_2014_04_22_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
PEDV_GER_L01018_K01_15_08_2015_nsp3_VIPR_ALG4_SNQ27907_1_10190_11029_1_NA_NA_Unknown_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
GDS08_nsp3_VIPR_ALG4_QCQ19935_1_10190_11029_1_2011_02_10_China_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
CH_SCGA_2017_nsp3_VIPR_ALG4_AZL47191_1_10190_11029_1_2017_01_05_China_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
USA_Minnesota61_2013_nsp3_VIPR_ALG4_658130729_10155_10994_1_2013_11_18_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
PEDV_LNsy_nsp3_VIPR_ALG4_ATG31099_1_10190_11029_1_2015_03_02_China_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
USA_NorthCarolina91_2013_nsp3_VIPR_ALG4_658130575_10155_10994_1_2013_12_08_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
CH_SCZY44_2017_nsp3_VIPR_ALG4_AZL47203_1_10190_11029_1_2017_09_09_China_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
OH8593_14_nsp3_VIPR_ALG4_946969666_10163_11002_1_2014_10_14_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
Br1_87_nsp3_VIPR_ALG4_SNW64183_1_10190_11029_1_NA_NA_Unknown_PEDV GGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
GDS33_nsp3_VIPR_ALG4_QCQ19899_1_10190_11029_1_2014_07_28_China_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
CH_TP_3_1_2018_nsp3_VIPR_ALG4_QCC26586_1_10190_11029_1_2018_China_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
IBR_8_JPN_2014_nsp3_VIPR_ALG4_948549354_10132_10971_1_2014_05_Japan_Pig_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
USA_Missouri93_2013_nsp3_VIPR_ALG4_658130589_10155_10994_1_2013_12_11_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
OKY_1_JPN_2014_nsp3_VIPR_ALG4_948549382_10132_10971_1_2014_03_Japan_Pig_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
GDS22_nsp3_VIPR_ALG4_QCQ19833_1_10190_11029_1_2012_09_23_China_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
USA_Minnesota71_2013_nsp3_VIPR_ALG4_658130736_10155_10994_1_2013_11_25_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
JS2008_nsp3_VIPR_ALG4_459357910_10166_11005_1_2008_China_Swine_PEDV GGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
PEDV_H3_Barcelona_Vic_nsp3_VIPR_ALG4_QKV43846_1_10194_11033_1_2019_01_07_Spain_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
USA_Missouri164_2014_nsp3_VIPR_ALG4_825144804_10145_10984_1_2014_02_26_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
USA_Illinois260_2014_nsp3_VIPR_ALG4_825144671_10145_10984_1_2014_03_14_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
COL_Antioquia06285_2015_nsp3_VIPR_ALG4_QGQ60275_1_10182_11021_1_2015_05_20_Colombia_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
KNU_1305_nsp3_VIPR_ALG4_659495322_10190_11029_1_2013_12_South_Korea_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
USA_NorthCarolina40_2013_nsp3_VIPR_ALG4_658130316_10155_10994_1_2013_10_05_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
PEDV_MEX_VER_02_2015_nsp3_VIPR_ALG4_AVU05485_1_10020_10859_1_2015_10_21_Mexico_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
KGW_1_JPN_2014_nsp3_VIPR_ALG4_948549221_10132_10971_1_2014_04_Japan_Pig_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHK
.***********************************************************
PC22A_P20_nsp3_VIPR_ALG4_APX55516_1_10181_11020_1_2013_10_01_USA_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
USA_Texas128_2013_nsp3_VIPR_ALG4_658130673_10155_10994_1_2013_11_12_USA_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
USA_Oklahoma477_2014_nsp3_VIPR_ALG4_825144888_10145_10984_1_2014_12_12_USA_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
USA_Minnesota289_2014_nsp3_VIPR_ALG4_825144643_10145_10984_1_2014_04_02_USA_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
OH10123_14_nsp3_VIPR_ALG4_946969657_10190_11029_1_2014_04_22_USA_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
PEDV_GER_L01018_K01_15_08_2015_nsp3_VIPR_ALG4_SNQ27907_1_10190_11029_1_NA_NA_Unknown_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
GDS08_nsp3_VIPR_ALG4_QCQ19935_1_10190_11029_1_2011_02_10_China_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAGHFDYHVSLMGFNAQGLVNIFVCFVVTIL
CH_SCGA_2017_nsp3_VIPR_ALG4_AZL47191_1_10190_11029_1_2017_01_05_China_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
USA_Minnesota61_2013_nsp3_VIPR_ALG4_658130729_10155_10994_1_2013_11_18_USA_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
PEDV_LNsy_nsp3_VIPR_ALG4_ATG31099_1_10190_11029_1_2015_03_02_China_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
USA_NorthCarolina91_2013_nsp3_VIPR_ALG4_658130575_10155_10994_1_2013_12_08_USA_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
CH_SCZY44_2017_nsp3_VIPR_ALG4_AZL47203_1_10190_11029_1_2017_09_09_China_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
OH8593_14_nsp3_VIPR_ALG4_946969666_10163_11002_1_2014_10_14_USA_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
Br1_87_nsp3_VIPR_ALG4_SNW64183_1_10190_11029_1_NA_NA_Unknown_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
GDS33_nsp3_VIPR_ALG4_QCQ19899_1_10190_11029_1_2014_07_28_China_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
CH_TP_3_1_2018_nsp3_VIPR_ALG4_QCC26586_1_10190_11029_1_2018_China_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
IBR_8_JPN_2014_nsp3_VIPR_ALG4_948549354_10132_10971_1_2014_05_Japan_Pig_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
USA_Missouri93_2013_nsp3_VIPR_ALG4_658130589_10155_10994_1_2013_12_11_USA_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
OKY_1_JPN_2014_nsp3_VIPR_ALG4_948549382_10132_10971_1_2014_03_Japan_Pig_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
GDS22_nsp3_VIPR_ALG4_QCQ19833_1_10190_11029_1_2012_09_23_China_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
USA_Minnesota71_2013_nsp3_VIPR_ALG4_658130736_10155_10994_1_2013_11_25_USA_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
JS2008_nsp3_VIPR_ALG4_459357910_10166_11005_1_2008_China_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
PEDV_H3_Barcelona_Vic_nsp3_VIPR_ALG4_QKV43846_1_10194_11033_1_2019_01_07_Spain_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
USA_Missouri164_2014_nsp3_VIPR_ALG4_825144804_10145_10984_1_2014_02_26_USA_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
USA_Illinois260_2014_nsp3_VIPR_ALG4_825144671_10145_10984_1_2014_03_14_USA_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
COL_Antioquia06285_2015_nsp3_VIPR_ALG4_QGQ60275_1_10182_11021_1_2015_05_20_Colombia_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
KNU_1305_nsp3_VIPR_ALG4_659495322_10190_11029_1_2013_12_South_Korea_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
USA_NorthCarolina40_2013_nsp3_VIPR_ALG4_658130316_10155_10994_1_2013_10_05_USA_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
PEDV_MEX_VER_02_2015_nsp3_VIPR_ALG4_AVU05485_1_10020_10859_1_2015_10_21_Mexico_Swine_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
KGW_1_JPN_2014_nsp3_VIPR_ALG4_948549221_10132_10971_1_2014_04_Japan_Pig_PEDV TLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTIL
******************************* ****************************
PC22A_P20_nsp3_VIPR_ALG4_APX55516_1_10181_11020_1_2013_10_01_USA_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALMTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
USA_Texas128_2013_nsp3_VIPR_ALG4_658130673_10155_10994_1_2013_11_12_USA_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
USA_Oklahoma477_2014_nsp3_VIPR_ALG4_825144888_10145_10984_1_2014_12_12_USA_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
USA_Minnesota289_2014_nsp3_VIPR_ALG4_825144643_10145_10984_1_2014_04_02_USA_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
OH10123_14_nsp3_VIPR_ALG4_946969657_10190_11029_1_2014_04_22_USA_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
PEDV_GER_L01018_K01_15_08_2015_nsp3_VIPR_ALG4_SNQ27907_1_10190_11029_1_NA_NA_Unknown_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
GDS08_nsp3_VIPR_ALG4_QCQ19935_1_10190_11029_1_2011_02_10_China_Swine_PEDV HGTYTWRFFNTPVSFVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
CH_SCGA_2017_nsp3_VIPR_ALG4_AZL47191_1_10190_11029_1_2017_01_05_China_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
USA_Minnesota61_2013_nsp3_VIPR_ALG4_658130729_10155_10994_1_2013_11_18_USA_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
PEDV_LNsy_nsp3_VIPR_ALG4_ATG31099_1_10190_11029_1_2015_03_02_China_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
USA_NorthCarolina91_2013_nsp3_VIPR_ALG4_658130575_10155_10994_1_2013_12_08_USA_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
CH_SCZY44_2017_nsp3_VIPR_ALG4_AZL47203_1_10190_11029_1_2017_09_09_China_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
OH8593_14_nsp3_VIPR_ALG4_946969666_10163_11002_1_2014_10_14_USA_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
Br1_87_nsp3_VIPR_ALG4_SNW64183_1_10190_11029_1_NA_NA_Unknown_PEDV HGTYTWRFFNTPASSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKVA
GDS33_nsp3_VIPR_ALG4_QCQ19899_1_10190_11029_1_2014_07_28_China_Swine_PEDV HGTYTWRFFNTPVSFVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
CH_TP_3_1_2018_nsp3_VIPR_ALG4_QCC26586_1_10190_11029_1_2018_China_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
IBR_8_JPN_2014_nsp3_VIPR_ALG4_948549354_10132_10971_1_2014_05_Japan_Pig_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
USA_Missouri93_2013_nsp3_VIPR_ALG4_658130589_10155_10994_1_2013_12_11_USA_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
OKY_1_JPN_2014_nsp3_VIPR_ALG4_948549382_10132_10971_1_2014_03_Japan_Pig_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
GDS22_nsp3_VIPR_ALG4_QCQ19833_1_10190_11029_1_2012_09_23_China_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
USA_Minnesota71_2013_nsp3_VIPR_ALG4_658130736_10155_10994_1_2013_11_25_USA_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
JS2008_nsp3_VIPR_ALG4_459357910_10166_11005_1_2008_China_Swine_PEDV HGTYTWRFFNTTVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
PEDV_H3_Barcelona_Vic_nsp3_VIPR_ALG4_QKV43846_1_10194_11033_1_2019_01_07_Spain_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
USA_Missouri164_2014_nsp3_VIPR_ALG4_825144804_10145_10984_1_2014_02_26_USA_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYAGDILSCAMTLFASVTGNWFVGAVCYKAA
USA_Illinois260_2014_nsp3_VIPR_ALG4_825144671_10145_10984_1_2014_03_14_USA_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
COL_Antioquia06285_2015_nsp3_VIPR_ALG4_QGQ60275_1_10182_11021_1_2015_05_20_Colombia_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
KNU_1305_nsp3_VIPR_ALG4_659495322_10190_11029_1_2013_12_South_Korea_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
USA_NorthCarolina40_2013_nsp3_VIPR_ALG4_658130316_10155_10994_1_2013_10_05_USA_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
PEDV_MEX_VER_02_2015_nsp3_VIPR_ALG4_AVU05485_1_10020_10859_1_2015_10_21_Mexico_Swine_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
KGW_1_JPN_2014_nsp3_VIPR_ALG4_948549221_10132_10971_1_2014_04_Japan_Pig_PEDV HGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAA
***********..* *******:*********.*************************.*
PC22A_P20_nsp3_VIPR_ALG4_APX55516_1_10181_11020_1_2013_10_01_USA_Swine_PEDV VYIALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
USA_Texas128_2013_nsp3_VIPR_ALG4_658130673_10155_10994_1_2013_11_12_USA_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
USA_Oklahoma477_2014_nsp3_VIPR_ALG4_825144888_10145_10984_1_2014_12_12_USA_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
USA_Minnesota289_2014_nsp3_VIPR_ALG4_825144643_10145_10984_1_2014_04_02_USA_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
OH10123_14_nsp3_VIPR_ALG4_946969657_10190_11029_1_2014_04_22_USA_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
PEDV_GER_L01018_K01_15_08_2015_nsp3_VIPR_ALG4_SNQ27907_1_10190_11029_1_NA_NA_Unknown_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
GDS08_nsp3_VIPR_ALG4_QCQ19935_1_10190_11029_1_2011_02_10_China_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
CH_SCGA_2017_nsp3_VIPR_ALG4_AZL47191_1_10190_11029_1_2017_01_05_China_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
USA_Minnesota61_2013_nsp3_VIPR_ALG4_658130729_10155_10994_1_2013_11_18_USA_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
PEDV_LNsy_nsp3_VIPR_ALG4_ATG31099_1_10190_11029_1_2015_03_02_China_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
USA_NorthCarolina91_2013_nsp3_VIPR_ALG4_658130575_10155_10994_1_2013_12_08_USA_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
CH_SCZY44_2017_nsp3_VIPR_ALG4_AZL47203_1_10190_11029_1_2017_09_09_China_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
OH8593_14_nsp3_VIPR_ALG4_946969666_10163_11002_1_2014_10_14_USA_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
Br1_87_nsp3_VIPR_ALG4_SNW64183_1_10190_11029_1_NA_NA_Unknown_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
GDS33_nsp3_VIPR_ALG4_QCQ19899_1_10190_11029_1_2014_07_28_China_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
CH_TP_3_1_2018_nsp3_VIPR_ALG4_QCC26586_1_10190_11029_1_2018_China_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
IBR_8_JPN_2014_nsp3_VIPR_ALG4_948549354_10132_10971_1_2014_05_Japan_Pig_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
USA_Missouri93_2013_nsp3_VIPR_ALG4_658130589_10155_10994_1_2013_12_11_USA_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
OKY_1_JPN_2014_nsp3_VIPR_ALG4_948549382_10132_10971_1_2014_03_Japan_Pig_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
GDS22_nsp3_VIPR_ALG4_QCQ19833_1_10190_11029_1_2012_09_23_China_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
USA_Minnesota71_2013_nsp3_VIPR_ALG4_658130736_10155_10994_1_2013_11_25_USA_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
JS2008_nsp3_VIPR_ALG4_459357910_10166_11005_1_2008_China_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
PEDV_H3_Barcelona_Vic_nsp3_VIPR_ALG4_QKV43846_1_10194_11033_1_2019_01_07_Spain_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
USA_Missouri164_2014_nsp3_VIPR_ALG4_825144804_10145_10984_1_2014_02_26_USA_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
USA_Illinois260_2014_nsp3_VIPR_ALG4_825144671_10145_10984_1_2014_03_14_USA_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
COL_Antioquia06285_2015_nsp3_VIPR_ALG4_QGQ60275_1_10182_11021_1_2015_05_20_Colombia_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
KNU_1305_nsp3_VIPR_ALG4_659495322_10190_11029_1_2013_12_South_Korea_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
USA_NorthCarolina40_2013_nsp3_VIPR_ALG4_658130316_10155_10994_1_2013_10_05_USA_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
PEDV_MEX_VER_02_2015_nsp3_VIPR_ALG4_AVU05485_1_10020_10859_1_2015_10_21_Mexico_Swine_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
KGW_1_JPN_2014_nsp3_VIPR_ALG4_948549221_10132_10971_1_2014_04_Japan_Pig_PEDV VYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAE
**:*********************************************************
PC22A_P20_nsp3_VIPR_ALG4_APX55516_1_10181_11020_1_2013_10_01_USA_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
USA_Texas128_2013_nsp3_VIPR_ALG4_658130673_10155_10994_1_2013_11_12_USA_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
USA_Oklahoma477_2014_nsp3_VIPR_ALG4_825144888_10145_10984_1_2014_12_12_USA_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
USA_Minnesota289_2014_nsp3_VIPR_ALG4_825144643_10145_10984_1_2014_04_02_USA_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
OH10123_14_nsp3_VIPR_ALG4_946969657_10190_11029_1_2014_04_22_USA_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
PEDV_GER_L01018_K01_15_08_2015_nsp3_VIPR_ALG4_SNQ27907_1_10190_11029_1_NA_NA_Unknown_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
GDS08_nsp3_VIPR_ALG4_QCQ19935_1_10190_11029_1_2011_02_10_China_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
CH_SCGA_2017_nsp3_VIPR_ALG4_AZL47191_1_10190_11029_1_2017_01_05_China_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
USA_Minnesota61_2013_nsp3_VIPR_ALG4_658130729_10155_10994_1_2013_11_18_USA_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
PEDV_LNsy_nsp3_VIPR_ALG4_ATG31099_1_10190_11029_1_2015_03_02_China_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
USA_NorthCarolina91_2013_nsp3_VIPR_ALG4_658130575_10155_10994_1_2013_12_08_USA_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
CH_SCZY44_2017_nsp3_VIPR_ALG4_AZL47203_1_10190_11029_1_2017_09_09_China_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
OH8593_14_nsp3_VIPR_ALG4_946969666_10163_11002_1_2014_10_14_USA_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
Br1_87_nsp3_VIPR_ALG4_SNW64183_1_10190_11029_1_NA_NA_Unknown_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
GDS33_nsp3_VIPR_ALG4_QCQ19899_1_10190_11029_1_2014_07_28_China_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
CH_TP_3_1_2018_nsp3_VIPR_ALG4_QCC26586_1_10190_11029_1_2018_China_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
IBR_8_JPN_2014_nsp3_VIPR_ALG4_948549354_10132_10971_1_2014_05_Japan_Pig_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
USA_Missouri93_2013_nsp3_VIPR_ALG4_658130589_10155_10994_1_2013_12_11_USA_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
OKY_1_JPN_2014_nsp3_VIPR_ALG4_948549382_10132_10971_1_2014_03_Japan_Pig_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
GDS22_nsp3_VIPR_ALG4_QCQ19833_1_10190_11029_1_2012_09_23_China_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
USA_Minnesota71_2013_nsp3_VIPR_ALG4_658130736_10155_10994_1_2013_11_25_USA_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
JS2008_nsp3_VIPR_ALG4_459357910_10166_11005_1_2008_China_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
PEDV_H3_Barcelona_Vic_nsp3_VIPR_ALG4_QKV43846_1_10194_11033_1_2019_01_07_Spain_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
USA_Missouri164_2014_nsp3_VIPR_ALG4_825144804_10145_10984_1_2014_02_26_USA_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
USA_Illinois260_2014_nsp3_VIPR_ALG4_825144671_10145_10984_1_2014_03_14_USA_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
COL_Antioquia06285_2015_nsp3_VIPR_ALG4_QGQ60275_1_10182_11021_1_2015_05_20_Colombia_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
KNU_1305_nsp3_VIPR_ALG4_659495322_10190_11029_1_2013_12_South_Korea_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
USA_NorthCarolina40_2013_nsp3_VIPR_ALG4_658130316_10155_10994_1_2013_10_05_USA_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
PEDV_MEX_VER_02_2015_nsp3_VIPR_ALG4_AVU05485_1_10020_10859_1_2015_10_21_Mexico_Swine_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
KGW_1_JPN_2014_nsp3_VIPR_ALG4_948549221_10132_10971_1_2014_04_Japan_Pig_PEDV FKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
****************************************
>PC22A_P20_nsp3_VIPR_ALG4_APX55516_1_10181_11020_1_2013_10_01_USA_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGCAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTCTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGATGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATTGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGTTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >USA_Texas128_2013_nsp3_VIPR_ALG4_658130673_10155_10994_1_2013_11_12_USA_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >USA_Oklahoma477_2014_nsp3_VIPR_ALG4_825144888_10145_10984_1_2014_12_12_USA_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACGGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >USA_Minnesota289_2014_nsp3_VIPR_ALG4_825144643_10145_10984_1_2014_04_02_USA_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >OH10123_14_nsp3_VIPR_ALG4_946969657_10190_11029_1_2014_04_22_USA_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >PEDV_GER_L01018_K01_15_08_2015_nsp3_VIPR_ALG4_SNQ27907_1_10190_11029_1_NA_NA_Unknown_PEDV AGTGGTTATGTTTCACGCGCCTGCAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGTTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >GDS08_nsp3_VIPR_ALG4_QCQ19935_1_10190_11029_1_2011_02_10_China_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGCAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGTTGTCCTCACTTTTGATGTTCACACTCAAGCATAAAACGTTGTTTTTCCAGGTCTTCTTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTAGAAGTCTACAATTATTTGGCAGGGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATATTTGTCTGCTTTGTTGTTACCATCTTACACGGCACATACACATGGCGCTTCTTTAATACACCTGTGAGTTTTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTCTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTCTTTAAGGTTAGTGTGGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >CH_SCGA_2017_nsp3_VIPR_ALG4_AZL47191_1_10190_11029_1_2017_01_05_China_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTCTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >USA_Minnesota61_2013_nsp3_VIPR_ALG4_658130729_10155_10994_1_2013_11_18_USA_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >PEDV_LNsy_nsp3_VIPR_ALG4_ATG31099_1_10190_11029_1_2015_03_02_China_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTCTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >USA_NorthCarolina91_2013_nsp3_VIPR_ALG4_658130575_10155_10994_1_2013_12_08_USA_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAATTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >CH_SCZY44_2017_nsp3_VIPR_ALG4_AZL47203_1_10190_11029_1_2017_09_09_China_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTCTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >OH8593_14_nsp3_VIPR_ALG4_946969666_10163_11002_1_2014_10_14_USA_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTTTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >Br1_87_nsp3_VIPR_ALG4_SNW64183_1_10190_11029_1_NA_NA_Unknown_PEDV GGTGGCTATGTGTCACGCGCCTGCAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTCTGGGTAAATCCTGGTTATGTTACACCTATGTTTGCGTGCTTGTCATTGCTATCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTCTTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTTATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTCTTTAATACACCTGCGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCCTATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGTTGCTGTGTATATGGCCTTGAGATTTCCTACGTTCGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTCTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAATGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTGTTGTCCGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >GDS33_nsp3_VIPR_ALG4_QCQ19899_1_10190_11029_1_2014_07_28_China_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTTTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTCTTTAAGGTTAGTGTAGGTGTTTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >CH_TP_3_1_2018_nsp3_VIPR_ALG4_QCC26586_1_10190_11029_1_2018_China_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGCTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCCGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTCTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >IBR_8_JPN_2014_nsp3_VIPR_ALG4_948549354_10132_10971_1_2014_05_Japan_Pig_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTTACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >USA_Missouri93_2013_nsp3_VIPR_ALG4_658130589_10155_10994_1_2013_12_11_USA_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >OKY_1_JPN_2014_nsp3_VIPR_ALG4_948549382_10132_10971_1_2014_03_Japan_Pig_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >GDS22_nsp3_VIPR_ALG4_QCQ19833_1_10190_11029_1_2012_09_23_China_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTCTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >USA_Minnesota71_2013_nsp3_VIPR_ALG4_658130736_10155_10994_1_2013_11_25_USA_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >JS2008_nsp3_VIPR_ALG4_459357910_10166_11005_1_2008_China_Swine_PEDV GGTGGTTATGTTTCACGCGCCTGCAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAACTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTTACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTCTTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAATACAACTGTGAGTTCTGTCACCTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTATGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTCGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTAGGTTATTTTACCTGTTGCTTCTATGGTATTCTCTACTGGTTCAACAGGTTCTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAATGGCCTACGTGCACCAACTGGAACACTTGATTCGCTACTGCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >PEDV_H3_Barcelona_Vic_nsp3_VIPR_ALG4_QKV43846_1_10194_11033_1_2019_01_07_Spain_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGCAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTCTTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGTTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >USA_Missouri164_2014_nsp3_VIPR_ALG4_825144804_10145_10984_1_2014_02_26_USA_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTGGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >USA_Illinois260_2014_nsp3_VIPR_ALG4_825144671_10145_10984_1_2014_03_14_USA_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >COL_Antioquia06285_2015_nsp3_VIPR_ALG4_QGQ60275_1_10182_11021_1_2015_05_20_Colombia_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >KNU_1305_nsp3_VIPR_ALG4_659495322_10190_11029_1_2013_12_South_Korea_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >USA_NorthCarolina40_2013_nsp3_VIPR_ALG4_658130316_10155_10994_1_2013_10_05_USA_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTCGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >PEDV_MEX_VER_02_2015_nsp3_VIPR_ALG4_AVU05485_1_10020_10859_1_2015_10_21_Mexico_Swine_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGCGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG >KGW_1_JPN_2014_nsp3_VIPR_ALG4_948549221_10132_10971_1_2014_04_Japan_Pig_PEDV AGTGGTTATGTTTCACGCGCCTGTAGAAATGTCTTGCTGGTTGGTTCTTTTCTGACTTTCTTTTGGTCAGAATTAGTTTCCTACACTAAGTTCTTTTGGGTAAATCCTGGTTATGTCACACCTATGTTTGCGTGTTTGTCATTGCTGTCCTCACTTTTGATGTTCACACTCAAGCATAAGACATTGTTTTTCCAGGTCTTTCTAATACCTGCTCTGATTGTTACATCTTGCATTAATTTGGCATTTGATGTTGAAGTCTACAACTATTTGGCAGAGCATTTTGATTACCATGTTTCTCTCATGGGTTTTAATGCACAAGGTCTTGTTAACATCTTTGTCTGCTTTGTTGTTACCATTTTACACGGCACATACACATGGCGCTTTTTTAACACACCTGTGAGTTCTGTCACTTATGTGGTAGCTTTGCTGACTGCGGCATATAACTATTTTTACGCTAGTGACATTCTTAGTTGTGCTATGACACTATTTGCTAGTGTGACTGGCAACTGGTTCGTTGGTGCTGTTTGTTATAAAGCTGCTGTTTATATGGCCTTGAGATTTCCTACTTTTGTGGCTATTTTTGGTGATATTAAGAGTGTTATGTTCTGTTACCTTGTGTTGGGTTATTTTACCTGTTGCTTCTACGGTATTCTCTACTGGTTCAACAGGTTTTTTAAGGTTAGTGTAGGTGTCTATGACTATACTGTTAGTGCTGCTGAGTTTAAGTATATGGTTGCTAACGGCCTACGTGCACCAACTGGAACACTTGATTCACTACTTCTGTCTGCCAAATTGATTGGTATTGGTGGTGAGCGGAATATTAAGATTTCTTCCGTTCAG
>PC22A_P20_nsp3_VIPR_ALG4_APX55516_1_10181_11020_1_2013_10_01_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALMTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYIALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >USA_Texas128_2013_nsp3_VIPR_ALG4_658130673_10155_10994_1_2013_11_12_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >USA_Oklahoma477_2014_nsp3_VIPR_ALG4_825144888_10145_10984_1_2014_12_12_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >USA_Minnesota289_2014_nsp3_VIPR_ALG4_825144643_10145_10984_1_2014_04_02_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >OH10123_14_nsp3_VIPR_ALG4_946969657_10190_11029_1_2014_04_22_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >PEDV_GER_L01018_K01_15_08_2015_nsp3_VIPR_ALG4_SNQ27907_1_10190_11029_1_NA_NA_Unknown_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >GDS08_nsp3_VIPR_ALG4_QCQ19935_1_10190_11029_1_2011_02_10_China_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAGHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSFVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >CH_SCGA_2017_nsp3_VIPR_ALG4_AZL47191_1_10190_11029_1_2017_01_05_China_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >USA_Minnesota61_2013_nsp3_VIPR_ALG4_658130729_10155_10994_1_2013_11_18_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >PEDV_LNsy_nsp3_VIPR_ALG4_ATG31099_1_10190_11029_1_2015_03_02_China_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >USA_NorthCarolina91_2013_nsp3_VIPR_ALG4_658130575_10155_10994_1_2013_12_08_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >CH_SCZY44_2017_nsp3_VIPR_ALG4_AZL47203_1_10190_11029_1_2017_09_09_China_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >OH8593_14_nsp3_VIPR_ALG4_946969666_10163_11002_1_2014_10_14_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >Br1_87_nsp3_VIPR_ALG4_SNW64183_1_10190_11029_1_NA_NA_Unknown_PEDV GGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPASSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKVAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >GDS33_nsp3_VIPR_ALG4_QCQ19899_1_10190_11029_1_2014_07_28_China_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSFVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >CH_TP_3_1_2018_nsp3_VIPR_ALG4_QCC26586_1_10190_11029_1_2018_China_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >IBR_8_JPN_2014_nsp3_VIPR_ALG4_948549354_10132_10971_1_2014_05_Japan_Pig_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >USA_Missouri93_2013_nsp3_VIPR_ALG4_658130589_10155_10994_1_2013_12_11_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >OKY_1_JPN_2014_nsp3_VIPR_ALG4_948549382_10132_10971_1_2014_03_Japan_Pig_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >GDS22_nsp3_VIPR_ALG4_QCQ19833_1_10190_11029_1_2012_09_23_China_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >USA_Minnesota71_2013_nsp3_VIPR_ALG4_658130736_10155_10994_1_2013_11_25_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >JS2008_nsp3_VIPR_ALG4_459357910_10166_11005_1_2008_China_Swine_PEDV GGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTTVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >PEDV_H3_Barcelona_Vic_nsp3_VIPR_ALG4_QKV43846_1_10194_11033_1_2019_01_07_Spain_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >USA_Missouri164_2014_nsp3_VIPR_ALG4_825144804_10145_10984_1_2014_02_26_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYAGDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >USA_Illinois260_2014_nsp3_VIPR_ALG4_825144671_10145_10984_1_2014_03_14_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >COL_Antioquia06285_2015_nsp3_VIPR_ALG4_QGQ60275_1_10182_11021_1_2015_05_20_Colombia_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >KNU_1305_nsp3_VIPR_ALG4_659495322_10190_11029_1_2013_12_South_Korea_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >USA_NorthCarolina40_2013_nsp3_VIPR_ALG4_658130316_10155_10994_1_2013_10_05_USA_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >PEDV_MEX_VER_02_2015_nsp3_VIPR_ALG4_AVU05485_1_10020_10859_1_2015_10_21_Mexico_Swine_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ >KGW_1_JPN_2014_nsp3_VIPR_ALG4_948549221_10132_10971_1_2014_04_Japan_Pig_PEDV SGYVSRACRNVLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAFDVEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPVSSVTYVVALLTAAYNYFYASDILSCAMTLFASVTGNWFVGAVCYKAAVYMALRFPTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQ
Reading sequence file /data//pss_subsets/LZW_nsp3_VIPR_ALG4_672096717_10190_11029_1_2012_02_China_Unknown_PEDV.result/original_alignment/codeml/fasta/LZW_nsp3_VIPR_ALG4_672096717_10190_11029_1_2012_02_China_Unknown_PEDV.result.1
Found 30 sequences of length 840
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 0.6%
Found 13 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0%100.0%
Using a window size of 80 with k as 1
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 37 polymorphic sites
**p-Value(s)**
----------
NSS: 3.33e-01 (1000 permutations)
Max Chi^2: 3.00e-03 (1000 permutations)
PHI (Permutation): 5.74e-01 (1000 permutations)
PHI (Normal): 4.29e-01
#NEXUS
[ID: 1382103868]
begin taxa;
dimensions ntax=30;
taxlabels
CH_SCZY44_2017_nsp3_VIPR_ALG4_AZL47203_1_10190_11029_1_2017_09_09_China_Swine_PEDV
USA_NorthCarolina91_2013_nsp3_VIPR_ALG4_658130575_10155_10994_1_2013_12_08_USA_Swine_PEDV
OH8593_14_nsp3_VIPR_ALG4_946969666_10163_11002_1_2014_10_14_USA_Swine_PEDV
IBR_8_JPN_2014_nsp3_VIPR_ALG4_948549354_10132_10971_1_2014_05_Japan_Pig_PEDV
CH_TP_3_1_2018_nsp3_VIPR_ALG4_QCC26586_1_10190_11029_1_2018_China_Swine_PEDV
USA_Missouri93_2013_nsp3_VIPR_ALG4_658130589_10155_10994_1_2013_12_11_USA_Swine_PEDV
JS2008_nsp3_VIPR_ALG4_459357910_10166_11005_1_2008_China_Swine_PEDV
USA_Minnesota71_2013_nsp3_VIPR_ALG4_658130736_10155_10994_1_2013_11_25_USA_Swine_PEDV
KNU_1305_nsp3_VIPR_ALG4_659495322_10190_11029_1_2013_12_South_Korea_Swine_PEDV
COL_Antioquia06285_2015_nsp3_VIPR_ALG4_QGQ60275_1_10182_11021_1_2015_05_20_Colombia_Swine_PEDV
USA_Minnesota289_2014_nsp3_VIPR_ALG4_825144643_10145_10984_1_2014_04_02_USA_Swine_PEDV
KGW_1_JPN_2014_nsp3_VIPR_ALG4_948549221_10132_10971_1_2014_04_Japan_Pig_PEDV
CH_SCGA_2017_nsp3_VIPR_ALG4_AZL47191_1_10190_11029_1_2017_01_05_China_Swine_PEDV
PC22A_P20_nsp3_VIPR_ALG4_APX55516_1_10181_11020_1_2013_10_01_USA_Swine_PEDV
USA_Oklahoma477_2014_nsp3_VIPR_ALG4_825144888_10145_10984_1_2014_12_12_USA_Swine_PEDV
USA_Texas128_2013_nsp3_VIPR_ALG4_658130673_10155_10994_1_2013_11_12_USA_Swine_PEDV
PEDV_GER_L01018_K01_15_08_2015_nsp3_VIPR_ALG4_SNQ27907_1_10190_11029_1_NA_NA_Unknown_PEDV
OH10123_14_nsp3_VIPR_ALG4_946969657_10190_11029_1_2014_04_22_USA_Swine_PEDV
GDS08_nsp3_VIPR_ALG4_QCQ19935_1_10190_11029_1_2011_02_10_China_Swine_PEDV
PEDV_LNsy_nsp3_VIPR_ALG4_ATG31099_1_10190_11029_1_2015_03_02_China_Swine_PEDV
Br1_87_nsp3_VIPR_ALG4_SNW64183_1_10190_11029_1_NA_NA_Unknown_PEDV
GDS33_nsp3_VIPR_ALG4_QCQ19899_1_10190_11029_1_2014_07_28_China_Swine_PEDV
GDS22_nsp3_VIPR_ALG4_QCQ19833_1_10190_11029_1_2012_09_23_China_Swine_PEDV
OKY_1_JPN_2014_nsp3_VIPR_ALG4_948549382_10132_10971_1_2014_03_Japan_Pig_PEDV
USA_Illinois260_2014_nsp3_VIPR_ALG4_825144671_10145_10984_1_2014_03_14_USA_Swine_PEDV
PEDV_H3_Barcelona_Vic_nsp3_VIPR_ALG4_QKV43846_1_10194_11033_1_2019_01_07_Spain_Swine_PEDV
USA_Missouri164_2014_nsp3_VIPR_ALG4_825144804_10145_10984_1_2014_02_26_USA_Swine_PEDV
USA_Minnesota61_2013_nsp3_VIPR_ALG4_658130729_10155_10994_1_2013_11_18_USA_Swine_PEDV
PEDV_MEX_VER_02_2015_nsp3_VIPR_ALG4_AVU05485_1_10020_10859_1_2015_10_21_Mexico_Swine_PEDV
USA_NorthCarolina40_2013_nsp3_VIPR_ALG4_658130316_10155_10994_1_2013_10_05_USA_Swine_PEDV
;
end;
begin trees;
translate
1 CH_SCZY44_2017_nsp3_VIPR_ALG4_AZL47203_1_10190_11029_1_2017_09_09_China_Swine_PEDV,
2 USA_NorthCarolina91_2013_nsp3_VIPR_ALG4_658130575_10155_10994_1_2013_12_08_USA_Swine_PEDV,
3 OH8593_14_nsp3_VIPR_ALG4_946969666_10163_11002_1_2014_10_14_USA_Swine_PEDV,
4 IBR_8_JPN_2014_nsp3_VIPR_ALG4_948549354_10132_10971_1_2014_05_Japan_Pig_PEDV,
5 CH_TP_3_1_2018_nsp3_VIPR_ALG4_QCC26586_1_10190_11029_1_2018_China_Swine_PEDV,
6 USA_Missouri93_2013_nsp3_VIPR_ALG4_658130589_10155_10994_1_2013_12_11_USA_Swine_PEDV,
7 JS2008_nsp3_VIPR_ALG4_459357910_10166_11005_1_2008_China_Swine_PEDV,
8 USA_Minnesota71_2013_nsp3_VIPR_ALG4_658130736_10155_10994_1_2013_11_25_USA_Swine_PEDV,
9 KNU_1305_nsp3_VIPR_ALG4_659495322_10190_11029_1_2013_12_South_Korea_Swine_PEDV,
10 COL_Antioquia06285_2015_nsp3_VIPR_ALG4_QGQ60275_1_10182_11021_1_2015_05_20_Colombia_Swine_PEDV,
11 USA_Minnesota289_2014_nsp3_VIPR_ALG4_825144643_10145_10984_1_2014_04_02_USA_Swine_PEDV,
12 KGW_1_JPN_2014_nsp3_VIPR_ALG4_948549221_10132_10971_1_2014_04_Japan_Pig_PEDV,
13 CH_SCGA_2017_nsp3_VIPR_ALG4_AZL47191_1_10190_11029_1_2017_01_05_China_Swine_PEDV,
14 PC22A_P20_nsp3_VIPR_ALG4_APX55516_1_10181_11020_1_2013_10_01_USA_Swine_PEDV,
15 USA_Oklahoma477_2014_nsp3_VIPR_ALG4_825144888_10145_10984_1_2014_12_12_USA_Swine_PEDV,
16 USA_Texas128_2013_nsp3_VIPR_ALG4_658130673_10155_10994_1_2013_11_12_USA_Swine_PEDV,
17 PEDV_GER_L01018_K01_15_08_2015_nsp3_VIPR_ALG4_SNQ27907_1_10190_11029_1_NA_NA_Unknown_PEDV,
18 OH10123_14_nsp3_VIPR_ALG4_946969657_10190_11029_1_2014_04_22_USA_Swine_PEDV,
19 GDS08_nsp3_VIPR_ALG4_QCQ19935_1_10190_11029_1_2011_02_10_China_Swine_PEDV,
20 PEDV_LNsy_nsp3_VIPR_ALG4_ATG31099_1_10190_11029_1_2015_03_02_China_Swine_PEDV,
21 Br1_87_nsp3_VIPR_ALG4_SNW64183_1_10190_11029_1_NA_NA_Unknown_PEDV,
22 GDS33_nsp3_VIPR_ALG4_QCQ19899_1_10190_11029_1_2014_07_28_China_Swine_PEDV,
23 GDS22_nsp3_VIPR_ALG4_QCQ19833_1_10190_11029_1_2012_09_23_China_Swine_PEDV,
24 OKY_1_JPN_2014_nsp3_VIPR_ALG4_948549382_10132_10971_1_2014_03_Japan_Pig_PEDV,
25 USA_Illinois260_2014_nsp3_VIPR_ALG4_825144671_10145_10984_1_2014_03_14_USA_Swine_PEDV,
26 PEDV_H3_Barcelona_Vic_nsp3_VIPR_ALG4_QKV43846_1_10194_11033_1_2019_01_07_Spain_Swine_PEDV,
27 USA_Missouri164_2014_nsp3_VIPR_ALG4_825144804_10145_10984_1_2014_02_26_USA_Swine_PEDV,
28 USA_Minnesota61_2013_nsp3_VIPR_ALG4_658130729_10155_10994_1_2013_11_18_USA_Swine_PEDV,
29 PEDV_MEX_VER_02_2015_nsp3_VIPR_ALG4_AVU05485_1_10020_10859_1_2015_10_21_Mexico_Swine_PEDV,
30 USA_NorthCarolina40_2013_nsp3_VIPR_ALG4_658130316_10155_10994_1_2013_10_05_USA_Swine_PEDV
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:4.850139e-04,5:1.815050e-03,13:4.698940e-04,20:4.711231e-04,22:1.829111e-03,23:4.672762e-04,(2:1.128148e-03,3:1.150637e-03,4:1.156495e-03,6:4.737633e-04,((((7:6.309825e-03,21:1.082705e-02)0.999:3.257829e-03,19:8.690255e-03)0.993:2.710509e-03,26:7.149914e-04)0.800:1.817024e-03,14:2.545362e-03,17:4.657925e-04)0.787:1.769099e-03,8:4.758899e-04,9:4.768728e-04,10:4.984387e-04,11:4.982401e-04,12:4.537226e-04,15:1.121613e-03,16:4.837707e-04,18:4.796898e-04,24:4.630053e-04,25:4.777974e-04,27:1.106396e-03,28:4.706699e-04,29:1.120296e-03,30:1.177305e-03)0.721:1.154199e-03);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:4.850139e-04,5:1.815050e-03,13:4.698940e-04,20:4.711231e-04,22:1.829111e-03,23:4.672762e-04,(2:1.128148e-03,3:1.150637e-03,4:1.156495e-03,6:4.737633e-04,((((7:6.309825e-03,21:1.082705e-02):3.257829e-03,19:8.690255e-03):2.710509e-03,26:7.149914e-04):1.817024e-03,14:2.545362e-03,17:4.657925e-04):1.769099e-03,8:4.758899e-04,9:4.768728e-04,10:4.984387e-04,11:4.982401e-04,12:4.537226e-04,15:1.121613e-03,16:4.837707e-04,18:4.796898e-04,24:4.630053e-04,25:4.777974e-04,27:1.106396e-03,28:4.706699e-04,29:1.120296e-03,30:1.177305e-03):1.154199e-03);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1532.72 -1558.23
2 -1532.53 -1563.14
--------------------------------------
TOTAL -1532.62 -1562.45
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.082739 0.000170 0.058873 0.108173 0.081693 1366.45 1430.87 1.001
r(A<->C){all} 0.138947 0.002694 0.049481 0.244073 0.133626 467.40 499.87 1.000
r(A<->G){all} 0.206684 0.003643 0.100408 0.328648 0.203263 412.69 440.44 1.001
r(A<->T){all} 0.021244 0.000259 0.000112 0.052659 0.017624 736.04 764.58 1.000
r(C<->G){all} 0.022645 0.000482 0.000028 0.066081 0.016052 588.27 622.46 1.001
r(C<->T){all} 0.522248 0.004724 0.388374 0.658400 0.523663 566.60 630.99 1.000
r(G<->T){all} 0.088232 0.000960 0.033792 0.150853 0.084717 507.55 643.64 1.000
pi(A){all} 0.199486 0.000191 0.171021 0.224560 0.199188 847.72 1037.71 1.001
pi(C){all} 0.181248 0.000167 0.156598 0.205652 0.181102 1171.41 1249.97 1.000
pi(G){all} 0.214315 0.000188 0.187417 0.241479 0.214298 968.45 1047.88 1.000
pi(T){all} 0.404951 0.000270 0.373708 0.437977 0.405219 1027.49 1097.17 1.001
alpha{1,2} 0.389585 0.365892 0.000105 1.494356 0.185571 624.66 800.82 1.000
alpha{3} 1.839187 1.473654 0.181159 4.345382 1.560764 1070.84 1219.18 1.000
pinvar{all} 0.325976 0.030697 0.000069 0.602949 0.331244 793.16 803.23 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/LZW_nsp3_VIPR_ALG4_672096717_10190_11029_1_2012_02_China_Unknown_PEDV.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 30 ls = 280
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 21 22 22 22 22 22 | Ser TCT 6 6 6 6 6 6 | Tyr TAT 12 12 12 12 12 12 | Cys TGT 6 6 6 6 6 6
TTC 9 8 8 8 8 8 | TCC 3 3 3 3 3 3 | TAC 8 8 8 8 8 8 | TGC 3 3 3 3 3 3
Leu TTA 2 2 2 2 2 2 | TCA 5 5 5 5 5 5 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 11 11 11 11 11 11 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 5 5 5 5 5 5
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 6 6 6 6 6 6 | Pro CCT 5 5 5 5 5 5 | His CAT 3 3 3 3 3 3 | Arg CGT 1 1 1 1 1 1
CTC 3 3 3 3 3 3 | CCC 0 0 0 0 0 0 | CAC 1 1 1 1 1 1 | CGC 2 2 2 2 2 2
CTA 4 4 4 4 4 4 | CCA 1 1 1 1 1 1 | Gln CAA 1 1 1 1 1 1 | CGA 0 0 0 0 0 0
CTG 5 6 6 6 6 6 | CCG 0 0 0 0 0 0 | CAG 2 2 2 2 2 2 | CGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 12 11 11 11 11 11 | Thr ACT 8 8 7 8 8 8 | Asn AAT 5 5 5 5 5 5 | Ser AGT 8 8 8 8 8 8
ATC 1 1 1 1 1 1 | ACC 2 2 2 2 2 2 | AAC 7 7 7 7 7 7 | AGC 0 0 0 0 0 0
ATA 1 1 1 1 1 1 | ACA 9 9 9 9 9 9 | Lys AAA 2 2 2 2 2 2 | Arg AGA 2 2 2 2 2 2
Met ATG 7 7 7 7 7 7 | ACG 0 0 1 0 0 0 | AAG 7 7 7 7 7 7 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 17 17 17 17 17 17 | Ala GCT 12 12 12 12 12 12 | Asp GAT 4 4 4 4 4 4 | Gly GGT 13 13 13 13 13 13
GTC 7 7 7 7 7 7 | GCC 3 3 3 3 3 3 | GAC 2 2 2 2 2 2 | GGC 3 3 3 3 3 3
GTA 3 3 3 3 3 3 | GCA 5 5 5 5 5 5 | Glu GAA 2 2 2 2 2 2 | GGA 1 1 1 1 1 1
GTG 5 5 5 5 5 5 | GCG 2 2 2 2 2 2 | GAG 3 3 3 3 3 3 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 20 21 22 21 22 21 | Ser TCT 5 6 6 6 6 6 | Tyr TAT 12 12 12 12 12 12 | Cys TGT 5 6 6 6 6 6
TTC 11 9 8 9 8 9 | TCC 3 3 3 3 3 3 | TAC 8 8 8 8 8 8 | TGC 4 3 3 3 3 3
Leu TTA 3 2 2 2 2 2 | TCA 5 5 5 5 5 5 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 12 11 11 11 11 11 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 5 5 5 5 5 5
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 6 6 6 6 6 6 | Pro CCT 5 5 5 5 5 5 | His CAT 3 3 3 3 3 3 | Arg CGT 1 1 1 1 1 1
CTC 3 3 3 3 3 3 | CCC 0 0 0 0 0 0 | CAC 1 1 1 1 1 1 | CGC 2 2 2 2 2 2
CTA 3 4 4 4 4 4 | CCA 1 1 1 1 1 1 | Gln CAA 1 1 1 1 1 1 | CGA 0 0 0 0 0 0
CTG 5 6 6 6 6 6 | CCG 0 0 0 0 0 0 | CAG 2 2 2 2 2 2 | CGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 10 11 11 11 11 11 | Thr ACT 8 8 8 8 8 8 | Asn AAT 7 5 5 5 6 5 | Ser AGT 8 8 8 8 8 8
ATC 1 1 1 1 1 1 | ACC 2 2 2 2 2 2 | AAC 5 7 7 7 6 7 | AGC 0 0 0 0 0 0
ATA 2 1 1 1 1 1 | ACA 8 9 9 9 9 9 | Lys AAA 3 2 2 2 2 2 | Arg AGA 2 2 2 2 2 2
Met ATG 7 7 7 7 7 7 | ACG 1 0 0 0 0 0 | AAG 6 7 7 7 7 7 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 15 17 17 17 17 17 | Ala GCT 12 12 12 12 12 12 | Asp GAT 4 4 4 4 4 4 | Gly GGT 13 13 13 13 13 13
GTC 8 7 7 7 7 7 | GCC 3 3 3 3 3 3 | GAC 2 2 2 2 2 2 | GGC 3 3 3 3 3 3
GTA 3 3 3 3 3 3 | GCA 5 5 5 5 5 5 | Glu GAA 2 2 2 2 2 2 | GGA 1 1 1 1 1 1
GTG 6 5 5 5 5 5 | GCG 2 2 2 2 2 2 | GAG 2 3 3 3 3 3 | GGG 1 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 22 17 22 21 22 22 | Ser TCT 6 5 5 6 6 6 | Tyr TAT 12 12 12 12 12 12 | Cys TGT 6 4 6 6 6 6
TTC 8 13 9 9 8 8 | TCC 3 4 3 3 3 3 | TAC 8 8 8 8 8 8 | TGC 3 5 3 3 3 3
Leu TTA 2 3 2 2 2 2 | TCA 5 5 5 5 5 5 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 11 12 11 11 11 11 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 5 5 5 5 5 5
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 7 6 6 6 6 6 | Pro CCT 5 5 5 5 5 5 | His CAT 3 3 3 3 3 3 | Arg CGT 1 1 1 1 1 1
CTC 2 2 3 3 3 3 | CCC 0 0 0 0 0 0 | CAC 1 1 1 1 1 1 | CGC 2 2 2 2 2 2
CTA 4 4 4 4 4 4 | CCA 1 1 1 1 1 1 | Gln CAA 1 1 1 1 1 1 | CGA 0 0 0 0 0 0
CTG 6 5 6 6 6 6 | CCG 0 0 0 0 0 0 | CAG 2 2 2 2 2 2 | CGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 11 11 11 11 11 11 | Thr ACT 8 7 8 8 8 8 | Asn AAT 5 7 5 5 5 5 | Ser AGT 8 7 8 8 8 8
ATC 1 1 1 1 1 1 | ACC 2 2 2 2 2 2 | AAC 7 5 7 7 7 7 | AGC 0 0 0 0 0 0
ATA 1 1 1 1 1 1 | ACA 9 9 9 9 9 9 | Lys AAA 2 2 2 2 2 2 | Arg AGA 2 2 2 2 2 2
Met ATG 7 7 7 7 7 7 | ACG 0 1 0 0 0 0 | AAG 7 7 7 7 7 7 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 17 17 18 17 18 17 | Ala GCT 12 11 12 11 12 12 | Asp GAT 4 4 4 4 4 4 | Gly GGT 13 13 13 12 13 13
GTC 7 6 6 7 7 7 | GCC 3 4 3 4 3 3 | GAC 2 2 2 2 2 2 | GGC 3 4 3 4 3 3
GTA 3 3 3 3 3 3 | GCA 5 4 5 5 5 5 | Glu GAA 2 2 2 2 2 2 | GGA 1 1 1 1 1 1
GTG 5 6 5 5 4 5 | GCG 2 3 2 2 2 2 | GAG 3 3 3 3 3 3 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 22 21 22 20 21 22 | Ser TCT 6 6 6 6 6 6 | Tyr TAT 12 12 12 14 12 12 | Cys TGT 6 6 6 5 6 6
TTC 8 9 8 10 9 8 | TCC 3 3 3 3 3 3 | TAC 8 8 8 6 8 8 | TGC 3 3 3 4 3 3
Leu TTA 2 2 2 3 3 2 | TCA 5 5 5 4 5 5 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 11 11 11 10 11 11 | TCG 0 0 0 1 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 5 5 5 5 5 5
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 6 6 6 5 6 6 | Pro CCT 5 5 5 4 5 5 | His CAT 3 3 3 3 3 3 | Arg CGT 1 1 1 1 1 1
CTC 3 3 3 3 3 3 | CCC 0 0 0 0 0 0 | CAC 1 1 1 1 1 1 | CGC 2 2 2 2 2 2
CTA 4 4 4 4 3 4 | CCA 1 1 1 1 1 1 | Gln CAA 1 1 1 1 1 1 | CGA 0 0 0 0 0 0
CTG 6 6 6 7 6 6 | CCG 0 0 0 0 0 0 | CAG 2 2 2 2 2 2 | CGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 11 11 11 11 11 11 | Thr ACT 8 8 8 8 8 8 | Asn AAT 5 5 5 7 5 5 | Ser AGT 8 8 8 7 8 7
ATC 1 1 1 1 1 1 | ACC 2 2 2 3 2 2 | AAC 7 7 7 5 7 7 | AGC 0 0 0 0 0 0
ATA 1 1 1 1 1 1 | ACA 9 9 9 9 9 9 | Lys AAA 2 2 2 2 2 2 | Arg AGA 2 2 2 2 2 2
Met ATG 7 7 7 7 7 7 | ACG 0 0 0 0 0 0 | AAG 7 7 7 7 7 7 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 17 17 17 17 17 17 | Ala GCT 12 12 12 12 12 12 | Asp GAT 4 4 4 4 4 4 | Gly GGT 13 13 13 14 13 14
GTC 7 7 7 7 7 7 | GCC 3 3 3 3 3 3 | GAC 2 2 2 2 2 2 | GGC 3 3 3 3 3 3
GTA 3 3 3 3 3 3 | GCA 5 5 5 5 5 5 | Glu GAA 2 2 2 2 2 2 | GGA 1 1 1 1 1 1
GTG 5 5 5 5 5 5 | GCG 2 2 2 2 2 2 | GAG 3 3 3 3 3 3 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 22 22 22 22 22 22 | Ser TCT 6 6 6 6 6 6 | Tyr TAT 12 12 12 12 12 12 | Cys TGT 6 6 6 6 6 6
TTC 8 8 8 8 8 8 | TCC 3 3 3 3 3 3 | TAC 8 8 8 8 8 8 | TGC 3 3 3 3 3 3
Leu TTA 2 2 2 2 2 2 | TCA 5 5 5 5 5 5 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 11 11 11 11 11 11 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 5 5 5 5 5 5
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 6 6 6 5 6 6 | Pro CCT 5 5 5 5 5 5 | His CAT 3 3 3 3 3 3 | Arg CGT 1 1 1 1 1 1
CTC 3 3 3 4 3 3 | CCC 0 0 0 0 0 0 | CAC 1 1 1 1 1 1 | CGC 2 2 2 2 2 2
CTA 4 4 4 4 4 4 | CCA 1 1 1 1 1 1 | Gln CAA 1 1 1 1 1 1 | CGA 0 0 0 0 1 0
CTG 6 6 6 6 6 6 | CCG 0 0 0 0 0 0 | CAG 2 2 2 2 2 2 | CGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 11 11 11 11 11 11 | Thr ACT 8 8 8 8 8 8 | Asn AAT 5 5 5 5 5 5 | Ser AGT 8 8 8 8 8 8
ATC 1 1 1 1 1 1 | ACC 2 2 2 2 2 2 | AAC 7 7 7 7 7 7 | AGC 0 0 0 0 0 0
ATA 1 1 1 1 1 1 | ACA 9 9 9 9 9 9 | Lys AAA 2 2 2 2 2 2 | Arg AGA 2 2 2 2 1 2
Met ATG 7 7 7 7 7 7 | ACG 0 0 0 0 0 0 | AAG 7 7 7 7 7 7 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 17 17 17 17 17 17 | Ala GCT 12 12 12 12 12 12 | Asp GAT 4 4 4 4 4 4 | Gly GGT 13 13 13 13 13 13
GTC 7 7 7 7 7 7 | GCC 3 3 3 3 3 3 | GAC 2 2 2 2 2 2 | GGC 3 3 3 3 3 3
GTA 3 3 3 3 3 3 | GCA 5 5 5 5 5 5 | Glu GAA 2 2 2 2 2 2 | GGA 1 1 1 1 1 1
GTG 5 5 5 5 5 5 | GCG 2 2 2 2 2 2 | GAG 3 3 3 3 3 3 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C303
position 1: T:0.32500 C:0.12500 A:0.25714 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49643 C:0.19286 A:0.13571 G:0.17500
Average T:0.40952 C:0.17857 A:0.20119 G:0.21071
#2: C624
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49643 C:0.18929 A:0.13571 G:0.17857
Average T:0.40952 C:0.17857 A:0.20000 G:0.21190
#3: C619
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49286 C:0.18929 A:0.13571 G:0.18214
Average T:0.40833 C:0.17857 A:0.20000 G:0.21310
#4: C543
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49643 C:0.18929 A:0.13571 G:0.17857
Average T:0.40952 C:0.17857 A:0.20000 G:0.21190
#5: C283
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49643 C:0.18929 A:0.13571 G:0.17857
Average T:0.40952 C:0.17857 A:0.20000 G:0.21190
#6: C369
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49643 C:0.18929 A:0.13571 G:0.17857
Average T:0.40952 C:0.17857 A:0.20000 G:0.21190
#7: C117
position 1: T:0.33214 C:0.12143 A:0.25357 G:0.29286
position 2: T:0.41071 C:0.21429 A:0.20714 G:0.16786
position 3: T:0.47857 C:0.20000 A:0.13929 G:0.18214
Average T:0.40714 C:0.17857 A:0.20000 G:0.21429
#8: C60
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49286 C:0.19286 A:0.13571 G:0.17857
Average T:0.40833 C:0.17976 A:0.20000 G:0.21190
#9: C559
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49643 C:0.18929 A:0.13571 G:0.17857
Average T:0.40952 C:0.17857 A:0.20000 G:0.21190
#10: C380
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49286 C:0.19286 A:0.13571 G:0.17857
Average T:0.40833 C:0.17976 A:0.20000 G:0.21190
#11: C598
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.50000 C:0.18571 A:0.13571 G:0.17857
Average T:0.41071 C:0.17738 A:0.20000 G:0.21190
#12: C65
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49286 C:0.19286 A:0.13571 G:0.17857
Average T:0.40833 C:0.17976 A:0.20000 G:0.21190
#13: C287
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.50000 C:0.18571 A:0.13571 G:0.17857
Average T:0.41071 C:0.17738 A:0.20000 G:0.21190
#14: C27
position 1: T:0.33214 C:0.12143 A:0.25000 G:0.29643
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.46429 C:0.21071 A:0.13571 G:0.18929
Average T:0.40119 C:0.18333 A:0.19881 G:0.21667
#15: C141
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.41071 C:0.21429 A:0.21071 G:0.16429
position 3: T:0.49643 C:0.18929 A:0.13571 G:0.17857
Average T:0.41071 C:0.17738 A:0.20000 G:0.21190
#16: C71
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.48571 C:0.20000 A:0.13571 G:0.17857
Average T:0.40595 C:0.18214 A:0.20000 G:0.21190
#17: C195
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.50000 C:0.18929 A:0.13571 G:0.17500
Average T:0.41071 C:0.17857 A:0.20000 G:0.21071
#18: C589
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49643 C:0.18929 A:0.13571 G:0.17857
Average T:0.40952 C:0.17857 A:0.20000 G:0.21190
#19: C291
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49643 C:0.18929 A:0.13571 G:0.17857
Average T:0.40952 C:0.17857 A:0.20000 G:0.21190
#20: C129
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49286 C:0.19286 A:0.13571 G:0.17857
Average T:0.40833 C:0.17976 A:0.20000 G:0.21190
#21: C565
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49643 C:0.18929 A:0.13571 G:0.17857
Average T:0.40952 C:0.17857 A:0.20000 G:0.21190
#22: C207
position 1: T:0.32500 C:0.12500 A:0.25357 G:0.29643
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49286 C:0.18929 A:0.13571 G:0.18214
Average T:0.40833 C:0.17738 A:0.20000 G:0.21429
#23: C377
position 1: T:0.32857 C:0.12500 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49286 C:0.19286 A:0.13571 G:0.17857
Average T:0.40952 C:0.17857 A:0.20000 G:0.21190
#24: C583
position 1: T:0.32500 C:0.12857 A:0.25000 G:0.29643
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49643 C:0.18929 A:0.13571 G:0.17857
Average T:0.40952 C:0.17857 A:0.19881 G:0.21310
#25: C483
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49643 C:0.18929 A:0.13571 G:0.17857
Average T:0.40952 C:0.17857 A:0.20000 G:0.21190
#26: C81
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49643 C:0.18929 A:0.13571 G:0.17857
Average T:0.40952 C:0.17857 A:0.20000 G:0.21190
#27: C224
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49643 C:0.18929 A:0.13571 G:0.17857
Average T:0.40952 C:0.17857 A:0.20000 G:0.21190
#28: C595
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49286 C:0.19286 A:0.13571 G:0.17857
Average T:0.40833 C:0.17976 A:0.20000 G:0.21190
#29: C407
position 1: T:0.32500 C:0.13214 A:0.25000 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49643 C:0.18929 A:0.13571 G:0.17857
Average T:0.40952 C:0.17976 A:0.19881 G:0.21190
#30: C223
position 1: T:0.32500 C:0.12857 A:0.25357 G:0.29286
position 2: T:0.40714 C:0.21786 A:0.21071 G:0.16429
position 3: T:0.49643 C:0.18929 A:0.13571 G:0.17857
Average T:0.40952 C:0.17857 A:0.20000 G:0.21190
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 644 | Ser S TCT 177 | Tyr Y TAT 362 | Cys C TGT 176
TTC 258 | TCC 91 | TAC 238 | TGC 94
Leu L TTA 64 | TCA 149 | *** * TAA 0 | *** * TGA 0
TTG 331 | TCG 1 | TAG 0 | Trp W TGG 150
------------------------------------------------------------------------------
Leu L CTT 179 | Pro P CCT 149 | His H CAT 90 | Arg R CGT 30
CTC 89 | CCC 0 | CAC 30 | CGC 60
CTA 118 | CCA 30 | Gln Q CAA 30 | CGA 1
CTG 178 | CCG 0 | CAG 60 | CGG 30
------------------------------------------------------------------------------
Ile I ATT 330 | Thr T ACT 238 | Asn N AAT 157 | Ser S AGT 237
ATC 30 | ACC 61 | AAC 203 | AGC 0
ATA 31 | ACA 269 | Lys K AAA 61 | Arg R AGA 59
Met M ATG 210 | ACG 3 | AAG 209 | AGG 30
------------------------------------------------------------------------------
Val V GTT 510 | Ala A GCT 358 | Asp D GAT 120 | Gly G GGT 391
GTC 209 | GCC 92 | GAC 60 | GGC 92
GTA 90 | GCA 149 | Glu E GAA 60 | GGA 30
GTG 151 | GCG 61 | GAG 89 | GGG 1
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.32560 C:0.12786 A:0.25333 G:0.29321
position 2: T:0.40738 C:0.21762 A:0.21060 G:0.16440
position 3: T:0.49381 C:0.19131 A:0.13583 G:0.17905
Average T:0.40893 C:0.17893 A:0.19992 G:0.21222
Model 1: NearlyNeutral (2 categories)
TREE # 1: (12, 16, 8, 10, 15, 20, (11, 13, 17, 18, ((((22, 14), 7), 23), 1, 6), 21, 27, 26, 4, 30, 3, 2, 5, 19, 25, 24, 9, 29, 28)); MP score: 61
lnL(ntime: 35 np: 38): -1448.508963 +0.000000
31..12 31..16 31..8 31..10 31..15 31..20 31..32 32..11 32..13 32..17 32..18 32..33 33..34 34..35 35..36 36..22 36..14 35..7 34..23 33..1 33..6 32..21 32..27 32..26 32..4 32..30 32..3 32..2 32..5 32..19 32..25 32..24 32..9 32..29 32..28
0.000004 0.007283 0.000004 0.000004 0.007308 0.000004 0.003646 0.003658 0.003658 0.003664 0.000004 0.007331 0.007315 0.011793 0.014613 0.031835 0.057413 0.044688 0.000004 0.011018 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.003659 0.000004 0.000004 0.000004 0.000004 0.003654 0.000004 0.003655 0.003652 3.827808 0.952994 0.024184
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.229914
(12: 0.000004, 16: 0.007283, 8: 0.000004, 10: 0.000004, 15: 0.007308, 20: 0.000004, (11: 0.003658, 13: 0.003658, 17: 0.003664, 18: 0.000004, ((((22: 0.031835, 14: 0.057413): 0.014613, 7: 0.044688): 0.011793, 23: 0.000004): 0.007315, 1: 0.011018, 6: 0.000004): 0.007331, 21: 0.000004, 27: 0.000004, 26: 0.000004, 4: 0.000004, 30: 0.000004, 3: 0.003659, 2: 0.000004, 5: 0.000004, 19: 0.000004, 25: 0.000004, 24: 0.003654, 9: 0.000004, 29: 0.003655, 28: 0.003652): 0.003646);
(C65: 0.000004, C71: 0.007283, C60: 0.000004, C380: 0.000004, C141: 0.007308, C129: 0.000004, (C598: 0.003658, C287: 0.003658, C195: 0.003664, C589: 0.000004, ((((C207: 0.031835, C27: 0.057413): 0.014613, C117: 0.044688): 0.011793, C377: 0.000004): 0.007315, C303: 0.011018, C369: 0.000004): 0.007331, C565: 0.000004, C224: 0.000004, C81: 0.000004, C543: 0.000004, C223: 0.000004, C619: 0.003659, C624: 0.000004, C283: 0.000004, C291: 0.000004, C483: 0.000004, C583: 0.003654, C559: 0.000004, C407: 0.003655, C595: 0.003652): 0.003646);
Detailed output identifying parameters
kappa (ts/tv) = 3.82781
MLEs of dN/dS (w) for site classes (K=2)
p: 0.95299 0.04701
w: 0.02418 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
31..16 0.007 635.2 204.8 0.0701 0.0006 0.0082 0.4 1.7
31..8 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
31..10 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
31..15 0.007 635.2 204.8 0.0701 0.0006 0.0082 0.4 1.7
31..20 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
31..32 0.004 635.2 204.8 0.0701 0.0003 0.0041 0.2 0.8
32..11 0.004 635.2 204.8 0.0701 0.0003 0.0041 0.2 0.8
32..13 0.004 635.2 204.8 0.0701 0.0003 0.0041 0.2 0.8
32..17 0.004 635.2 204.8 0.0701 0.0003 0.0041 0.2 0.8
32..18 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..33 0.007 635.2 204.8 0.0701 0.0006 0.0082 0.4 1.7
33..34 0.007 635.2 204.8 0.0701 0.0006 0.0082 0.4 1.7
34..35 0.012 635.2 204.8 0.0701 0.0009 0.0132 0.6 2.7
35..36 0.015 635.2 204.8 0.0701 0.0011 0.0164 0.7 3.4
36..22 0.032 635.2 204.8 0.0701 0.0025 0.0358 1.6 7.3
36..14 0.057 635.2 204.8 0.0701 0.0045 0.0645 2.9 13.2
35..7 0.045 635.2 204.8 0.0701 0.0035 0.0502 2.2 10.3
34..23 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
33..1 0.011 635.2 204.8 0.0701 0.0009 0.0124 0.6 2.5
33..6 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..21 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..27 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..26 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..4 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..30 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..3 0.004 635.2 204.8 0.0701 0.0003 0.0041 0.2 0.8
32..2 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..5 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..19 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..25 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..24 0.004 635.2 204.8 0.0701 0.0003 0.0041 0.2 0.8
32..9 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..29 0.004 635.2 204.8 0.0701 0.0003 0.0041 0.2 0.8
32..28 0.004 635.2 204.8 0.0701 0.0003 0.0041 0.2 0.8
Time used: 4:33
Model 2: PositiveSelection (3 categories)
TREE # 1: (12, 16, 8, 10, 15, 20, (11, 13, 17, 18, ((((22, 14), 7), 23), 1, 6), 21, 27, 26, 4, 30, 3, 2, 5, 19, 25, 24, 9, 29, 28)); MP score: 61
lnL(ntime: 35 np: 40): -1448.508963 +0.000000
31..12 31..16 31..8 31..10 31..15 31..20 31..32 32..11 32..13 32..17 32..18 32..33 33..34 34..35 35..36 36..22 36..14 35..7 34..23 33..1 33..6 32..21 32..27 32..26 32..4 32..30 32..3 32..2 32..5 32..19 32..25 32..24 32..9 32..29 32..28
0.000004 0.007283 0.000004 0.000004 0.007308 0.000004 0.003646 0.003658 0.003658 0.003664 0.000004 0.007331 0.007315 0.011793 0.014613 0.031835 0.057413 0.044688 0.000004 0.011019 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.003659 0.000004 0.000004 0.000004 0.000004 0.003654 0.000004 0.003655 0.003652 3.827785 0.952995 0.015420 0.024185 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.229914
(12: 0.000004, 16: 0.007283, 8: 0.000004, 10: 0.000004, 15: 0.007308, 20: 0.000004, (11: 0.003658, 13: 0.003658, 17: 0.003664, 18: 0.000004, ((((22: 0.031835, 14: 0.057413): 0.014613, 7: 0.044688): 0.011793, 23: 0.000004): 0.007315, 1: 0.011019, 6: 0.000004): 0.007331, 21: 0.000004, 27: 0.000004, 26: 0.000004, 4: 0.000004, 30: 0.000004, 3: 0.003659, 2: 0.000004, 5: 0.000004, 19: 0.000004, 25: 0.000004, 24: 0.003654, 9: 0.000004, 29: 0.003655, 28: 0.003652): 0.003646);
(C65: 0.000004, C71: 0.007283, C60: 0.000004, C380: 0.000004, C141: 0.007308, C129: 0.000004, (C598: 0.003658, C287: 0.003658, C195: 0.003664, C589: 0.000004, ((((C207: 0.031835, C27: 0.057413): 0.014613, C117: 0.044688): 0.011793, C377: 0.000004): 0.007315, C303: 0.011019, C369: 0.000004): 0.007331, C565: 0.000004, C224: 0.000004, C81: 0.000004, C543: 0.000004, C223: 0.000004, C619: 0.003659, C624: 0.000004, C283: 0.000004, C291: 0.000004, C483: 0.000004, C583: 0.003654, C559: 0.000004, C407: 0.003655, C595: 0.003652): 0.003646);
Detailed output identifying parameters
kappa (ts/tv) = 3.82778
MLEs of dN/dS (w) for site classes (K=3)
p: 0.95299 0.01542 0.03159
w: 0.02418 1.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
31..16 0.007 635.2 204.8 0.0701 0.0006 0.0082 0.4 1.7
31..8 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
31..10 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
31..15 0.007 635.2 204.8 0.0701 0.0006 0.0082 0.4 1.7
31..20 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
31..32 0.004 635.2 204.8 0.0701 0.0003 0.0041 0.2 0.8
32..11 0.004 635.2 204.8 0.0701 0.0003 0.0041 0.2 0.8
32..13 0.004 635.2 204.8 0.0701 0.0003 0.0041 0.2 0.8
32..17 0.004 635.2 204.8 0.0701 0.0003 0.0041 0.2 0.8
32..18 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..33 0.007 635.2 204.8 0.0701 0.0006 0.0082 0.4 1.7
33..34 0.007 635.2 204.8 0.0701 0.0006 0.0082 0.4 1.7
34..35 0.012 635.2 204.8 0.0701 0.0009 0.0132 0.6 2.7
35..36 0.015 635.2 204.8 0.0701 0.0011 0.0164 0.7 3.4
36..22 0.032 635.2 204.8 0.0701 0.0025 0.0358 1.6 7.3
36..14 0.057 635.2 204.8 0.0701 0.0045 0.0645 2.9 13.2
35..7 0.045 635.2 204.8 0.0701 0.0035 0.0502 2.2 10.3
34..23 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
33..1 0.011 635.2 204.8 0.0701 0.0009 0.0124 0.6 2.5
33..6 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..21 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..27 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..26 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..4 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..30 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..3 0.004 635.2 204.8 0.0701 0.0003 0.0041 0.2 0.8
32..2 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..5 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..19 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..25 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..24 0.004 635.2 204.8 0.0701 0.0003 0.0041 0.2 0.8
32..9 0.000 635.2 204.8 0.0701 0.0000 0.0000 0.0 0.0
32..29 0.004 635.2 204.8 0.0701 0.0003 0.0041 0.2 0.8
32..28 0.004 635.2 204.8 0.0701 0.0003 0.0041 0.2 0.8
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C303)
Pr(w>1) post mean +- SE for w
135 S 0.558 1.474 +- 0.874
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.702 0.190 0.060 0.023 0.011 0.006 0.003 0.002 0.002 0.001
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.994
sum of density on p0-p1 = 1.000000
Time used: 6:25
Model 7: beta (10 categories)
TREE # 1: (12, 16, 8, 10, 15, 20, (11, 13, 17, 18, ((((22, 14), 7), 23), 1, 6), 21, 27, 26, 4, 30, 3, 2, 5, 19, 25, 24, 9, 29, 28)); MP score: 61
check convergence..
lnL(ntime: 35 np: 38): -1448.325223 +0.000000
31..12 31..16 31..8 31..10 31..15 31..20 31..32 32..11 32..13 32..17 32..18 32..33 33..34 34..35 35..36 36..22 36..14 35..7 34..23 33..1 33..6 32..21 32..27 32..26 32..4 32..30 32..3 32..2 32..5 32..19 32..25 32..24 32..9 32..29 32..28
0.000004 0.007277 0.000004 0.000004 0.007303 0.000004 0.003643 0.003655 0.003655 0.003662 0.000004 0.007325 0.007309 0.011765 0.014611 0.031782 0.057335 0.044655 0.000004 0.011015 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.003657 0.000004 0.000004 0.000004 0.000004 0.003651 0.000004 0.003652 0.003649 3.795406 0.051373 0.682865
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.229671
(12: 0.000004, 16: 0.007277, 8: 0.000004, 10: 0.000004, 15: 0.007303, 20: 0.000004, (11: 0.003655, 13: 0.003655, 17: 0.003662, 18: 0.000004, ((((22: 0.031782, 14: 0.057335): 0.014611, 7: 0.044655): 0.011765, 23: 0.000004): 0.007309, 1: 0.011015, 6: 0.000004): 0.007325, 21: 0.000004, 27: 0.000004, 26: 0.000004, 4: 0.000004, 30: 0.000004, 3: 0.003657, 2: 0.000004, 5: 0.000004, 19: 0.000004, 25: 0.000004, 24: 0.003651, 9: 0.000004, 29: 0.003652, 28: 0.003649): 0.003643);
(C65: 0.000004, C71: 0.007277, C60: 0.000004, C380: 0.000004, C141: 0.007303, C129: 0.000004, (C598: 0.003655, C287: 0.003655, C195: 0.003662, C589: 0.000004, ((((C207: 0.031782, C27: 0.057335): 0.014611, C117: 0.044655): 0.011765, C377: 0.000004): 0.007309, C303: 0.011015, C369: 0.000004): 0.007325, C565: 0.000004, C224: 0.000004, C81: 0.000004, C543: 0.000004, C223: 0.000004, C619: 0.003657, C624: 0.000004, C283: 0.000004, C291: 0.000004, C483: 0.000004, C583: 0.003651, C559: 0.000004, C407: 0.003652, C595: 0.003649): 0.003643);
Detailed output identifying parameters
kappa (ts/tv) = 3.79541
Parameters in M7 (beta):
p = 0.05137 q = 0.68286
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00000 0.00000 0.00000 0.00000 0.00000 0.00002 0.00044 0.00715 0.07986 0.57217
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
31..16 0.007 635.4 204.6 0.0660 0.0005 0.0083 0.3 1.7
31..8 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
31..10 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
31..15 0.007 635.4 204.6 0.0660 0.0005 0.0083 0.3 1.7
31..20 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
31..32 0.004 635.4 204.6 0.0660 0.0003 0.0041 0.2 0.8
32..11 0.004 635.4 204.6 0.0660 0.0003 0.0042 0.2 0.8
32..13 0.004 635.4 204.6 0.0660 0.0003 0.0042 0.2 0.8
32..17 0.004 635.4 204.6 0.0660 0.0003 0.0042 0.2 0.9
32..18 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
32..33 0.007 635.4 204.6 0.0660 0.0005 0.0083 0.3 1.7
33..34 0.007 635.4 204.6 0.0660 0.0005 0.0083 0.3 1.7
34..35 0.012 635.4 204.6 0.0660 0.0009 0.0134 0.6 2.7
35..36 0.015 635.4 204.6 0.0660 0.0011 0.0166 0.7 3.4
36..22 0.032 635.4 204.6 0.0660 0.0024 0.0361 1.5 7.4
36..14 0.057 635.4 204.6 0.0660 0.0043 0.0651 2.7 13.3
35..7 0.045 635.4 204.6 0.0660 0.0033 0.0507 2.1 10.4
34..23 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
33..1 0.011 635.4 204.6 0.0660 0.0008 0.0125 0.5 2.6
33..6 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
32..21 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
32..27 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
32..26 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
32..4 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
32..30 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
32..3 0.004 635.4 204.6 0.0660 0.0003 0.0042 0.2 0.8
32..2 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
32..5 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
32..19 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
32..25 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
32..24 0.004 635.4 204.6 0.0660 0.0003 0.0041 0.2 0.8
32..9 0.000 635.4 204.6 0.0660 0.0000 0.0000 0.0 0.0
32..29 0.004 635.4 204.6 0.0660 0.0003 0.0041 0.2 0.8
32..28 0.004 635.4 204.6 0.0660 0.0003 0.0041 0.2 0.8
Time used: 14:14
Model 8: beta&w>1 (11 categories)
TREE # 1: (12, 16, 8, 10, 15, 20, (11, 13, 17, 18, ((((22, 14), 7), 23), 1, 6), 21, 27, 26, 4, 30, 3, 2, 5, 19, 25, 24, 9, 29, 28)); MP score: 61
lnL(ntime: 35 np: 40): -1448.326553 +0.000000
31..12 31..16 31..8 31..10 31..15 31..20 31..32 32..11 32..13 32..17 32..18 32..33 33..34 34..35 35..36 36..22 36..14 35..7 34..23 33..1 33..6 32..21 32..27 32..26 32..4 32..30 32..3 32..2 32..5 32..19 32..25 32..24 32..9 32..29 32..28
0.000004 0.007279 0.000004 0.000004 0.007305 0.000004 0.003644 0.003656 0.003656 0.003663 0.000004 0.007327 0.007311 0.011771 0.014605 0.031796 0.057355 0.044656 0.000004 0.011016 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.003657 0.000004 0.000004 0.000004 0.000004 0.003652 0.000004 0.003653 0.003650 3.747181 0.999990 0.048008 0.641117 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.229721
(12: 0.000004, 16: 0.007279, 8: 0.000004, 10: 0.000004, 15: 0.007305, 20: 0.000004, (11: 0.003656, 13: 0.003656, 17: 0.003663, 18: 0.000004, ((((22: 0.031796, 14: 0.057355): 0.014605, 7: 0.044656): 0.011771, 23: 0.000004): 0.007311, 1: 0.011016, 6: 0.000004): 0.007327, 21: 0.000004, 27: 0.000004, 26: 0.000004, 4: 0.000004, 30: 0.000004, 3: 0.003657, 2: 0.000004, 5: 0.000004, 19: 0.000004, 25: 0.000004, 24: 0.003652, 9: 0.000004, 29: 0.003653, 28: 0.003650): 0.003644);
(C65: 0.000004, C71: 0.007279, C60: 0.000004, C380: 0.000004, C141: 0.007305, C129: 0.000004, (C598: 0.003656, C287: 0.003656, C195: 0.003663, C589: 0.000004, ((((C207: 0.031796, C27: 0.057355): 0.014605, C117: 0.044656): 0.011771, C377: 0.000004): 0.007311, C303: 0.011016, C369: 0.000004): 0.007327, C565: 0.000004, C224: 0.000004, C81: 0.000004, C543: 0.000004, C223: 0.000004, C619: 0.003657, C624: 0.000004, C283: 0.000004, C291: 0.000004, C483: 0.000004, C583: 0.003652, C559: 0.000004, C407: 0.003653, C595: 0.003650): 0.003644);
Detailed output identifying parameters
kappa (ts/tv) = 3.74718
Parameters in M8 (beta&w>1):
p0 = 0.99999 p = 0.04801 q = 0.64112
(p1 = 0.00001) w = 1.00000
MLEs of dN/dS (w) for site classes (K=11)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.00001
w: 0.00000 0.00000 0.00000 0.00000 0.00000 0.00001 0.00028 0.00547 0.07240 0.58182 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
31..16 0.007 635.8 204.2 0.0660 0.0005 0.0083 0.3 1.7
31..8 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
31..10 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
31..15 0.007 635.8 204.2 0.0660 0.0005 0.0083 0.3 1.7
31..20 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
31..32 0.004 635.8 204.2 0.0660 0.0003 0.0041 0.2 0.8
32..11 0.004 635.8 204.2 0.0660 0.0003 0.0042 0.2 0.8
32..13 0.004 635.8 204.2 0.0660 0.0003 0.0042 0.2 0.8
32..17 0.004 635.8 204.2 0.0660 0.0003 0.0042 0.2 0.9
32..18 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
32..33 0.007 635.8 204.2 0.0660 0.0006 0.0083 0.3 1.7
33..34 0.007 635.8 204.2 0.0660 0.0005 0.0083 0.3 1.7
34..35 0.012 635.8 204.2 0.0660 0.0009 0.0134 0.6 2.7
35..36 0.015 635.8 204.2 0.0660 0.0011 0.0166 0.7 3.4
36..22 0.032 635.8 204.2 0.0660 0.0024 0.0362 1.5 7.4
36..14 0.057 635.8 204.2 0.0660 0.0043 0.0652 2.7 13.3
35..7 0.045 635.8 204.2 0.0660 0.0034 0.0508 2.1 10.4
34..23 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
33..1 0.011 635.8 204.2 0.0660 0.0008 0.0125 0.5 2.6
33..6 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
32..21 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
32..27 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
32..26 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
32..4 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
32..30 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
32..3 0.004 635.8 204.2 0.0660 0.0003 0.0042 0.2 0.8
32..2 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
32..5 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
32..19 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
32..25 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
32..24 0.004 635.8 204.2 0.0660 0.0003 0.0042 0.2 0.8
32..9 0.000 635.8 204.2 0.0660 0.0000 0.0000 0.0 0.0
32..29 0.004 635.8 204.2 0.0660 0.0003 0.0042 0.2 0.8
32..28 0.004 635.8 204.2 0.0660 0.0003 0.0042 0.2 0.8
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C303)
Pr(w>1) post mean +- SE for w
135 S 0.664 1.271 +- 0.719
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000
p : 0.999 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.000 0.002 0.012 0.040 0.095 0.175 0.278 0.399
ws: 0.864 0.107 0.020 0.005 0.002 0.001 0.000 0.000 0.000 0.000
Time used: 36:08
Model 1: NearlyNeutral -1448.508963 Model 2: PositiveSelection -1448.508963 Model 7: beta -1448.325223 Model 8: beta&w>1 -1448.326553 Model 2 vs 1 0 Model 8 vs 7 -.002660
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
