--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Mon Dec 11 17:06:49 WET 2017
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=MUSCLE
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS1/pet1/Phyb_S22_15/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS1/pet1/Phyb_S22_15/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS1/pet1/Phyb_S22_15/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -12700.09 -12721.31
2 -12699.86 -12719.23
--------------------------------------
TOTAL -12699.97 -12720.73
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS1/pet1/Phyb_S22_15/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS1/pet1/Phyb_S22_15/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS1/pet1/Phyb_S22_15/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 3.268125 0.011294 3.073699 3.488364 3.264066 1152.13 1256.43 1.000
r(A<->C){all} 0.135263 0.000106 0.114280 0.154271 0.134951 778.98 890.79 1.000
r(A<->G){all} 0.300452 0.000227 0.272027 0.329226 0.300194 641.03 717.47 1.000
r(A<->T){all} 0.098565 0.000048 0.084938 0.111547 0.098402 780.16 790.92 1.000
r(C<->G){all} 0.127302 0.000128 0.105594 0.150362 0.127127 817.46 887.87 1.000
r(C<->T){all} 0.258425 0.000189 0.231513 0.285170 0.258314 536.75 665.11 1.000
r(G<->T){all} 0.079992 0.000053 0.066148 0.094381 0.079734 938.58 972.83 1.000
pi(A){all} 0.303832 0.000092 0.285137 0.321933 0.303898 714.44 783.82 1.000
pi(C){all} 0.171523 0.000053 0.157414 0.186291 0.171538 655.93 761.76 1.000
pi(G){all} 0.194090 0.000067 0.179155 0.210579 0.193894 810.16 825.25 1.000
pi(T){all} 0.330555 0.000105 0.311400 0.350040 0.330190 864.51 895.15 1.000
alpha{1,2} 1.334385 0.033045 1.003783 1.675686 1.313239 828.32 946.01 1.000
alpha{3} 4.749783 0.945954 2.986935 6.686847 4.632338 1501.00 1501.00 1.000
pinvar{all} 0.046755 0.000451 0.003381 0.084092 0.046452 1006.59 1091.97 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -11405.15486
Model 2: PositiveSelection -11403.184732
Model 0: one-ratio -11576.458564
Model 3: discrete -11363.780608
Model 7: beta -11378.955156
Model 8: beta&w>1 -11365.264844
Model 0 vs 1 342.60740799999985
Model 2 vs 1 3.940256000001682
Model 8 vs 7 27.380624000001262
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: 1_Phybrida_S22_SLF10_AB933064)
Pr(w>1) post mean +- SE for w
48 T 0.552 1.115
51 F 0.934 1.423
65 Y 0.953* 1.437
67 F 0.977* 1.455
83 K 0.673 1.220
98 A 0.911 1.406
101 I 0.832 1.346
118 S 0.961* 1.443
119 L 0.951* 1.436
148 S 0.677 1.220
150 S 0.759 1.288
160 A 0.793 1.315
176 C 0.587 1.154
177 D 0.682 1.224
180 M 0.708 1.246
200 F 0.914 1.407
203 W 0.807 1.325
204 F 0.716 1.249
219 F 0.717 1.258
220 A 0.982* 1.459
265 M 0.902 1.399
266 P 0.913 1.407
267 S 0.885 1.386
270 T 0.710 1.249
273 L 0.577 1.138
318 H 0.584 1.150
339 E 0.904 1.401
352 A 0.707 1.244
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: 1_Phybrida_S22_SLF10_AB933064)
Pr(w>1) post mean +- SE for w
51 F 0.816 1.383 +- 0.292
65 Y 0.864 1.417 +- 0.262
67 F 0.922 1.459 +- 0.210
98 A 0.760 1.343 +- 0.315
101 I 0.624 1.241 +- 0.361
118 S 0.880 1.429 +- 0.248
119 L 0.854 1.411 +- 0.266
150 S 0.529 1.162 +- 0.380
160 A 0.571 1.197 +- 0.373
200 F 0.778 1.355 +- 0.315
203 W 0.593 1.212 +- 0.370
220 A 0.931 1.466 +- 0.198
265 M 0.745 1.330 +- 0.323
266 P 0.774 1.352 +- 0.315
267 S 0.714 1.307 +- 0.335
339 E 0.741 1.329 +- 0.320
>C1
MKELPQDVVIYIFVMLPVKSLLRFKCTDKTFCHIIKSSTFINLHLNHTTN
FNDELVLLKRSFETDEYNFYKSILSFLFAKEDYDFKPISPDVEIPHLTTT
AACICHRLIGPCNGLIVLTDSLTTIVFNPATLKYRLIPPCPFGIPRGFRR
SISGIGFGFDSDANDYKVVRLSEVYKEPCDKEMKVDIYDFSVDSWRELLG
QDVPFVFWFPCAEILYKRNFHWFAFADVVVILCFEMNTEKFHNMGMPDAC
HFADGKCYGLVILFKCMTLICYPDPMPSSPTEKLTDIWIMKEYGEKESWI
KRCSIRLLPESPLAVWKDEILLLHSKTGHLIAYDFNSNEVQELDLHGYPE
SLRIIIYRESLTAIPRNNDCIELQNFRCNooooooooooooooooo
>C2
MVDGIMKKFHEDVLIYILLRLPVKSLIRLKCISKTWYTLIQSSTFINLHL
NRTTTYNDELIFFKRSIKLEPDLFKNILSFLSSDNEDDLTPVYPDIDVPY
LTSDYCSRFHQLIGPCRGLIALTDFTVIVLLNPATRKYRLLPGSPFVCPK
GFTFVTRGVGFGYSTAENYYKLVRIFEVYTDPYDRDLDARHSKVEIYDSC
TDCWRDLDLTVKLLPKVRRFACSETFYKEAFHWCAHDDTVMILCFDIRLE
TFHYMKLPDHCHFWDNKGYGLTVLSNYLTFITYPNPRCALDPGQEFTDIW
IMEEYGANGTWIKKYTIGPLPIESSLSILKDHLLLLQSTSGTLSSYNLSS
DELKEFNFQGFISTLRLVVYKESLTIIPRESEHGTKVQTFoooooo
>C3
MPDGIIMKLHQDIIIYMLLRLPVKFLLRFKCISKYCYTLTKSSTFINIHL
NRATTSEDEYILFKRSFKEDVERYKGIFSFLSSNNGDDLNSIFPDLDVPN
MTSLYSITQDKLIGPCHGLVAVMNVSSTILLNPATRKYRLLPSSPFGVPK
GFYRNIENGGFGFDAVVNDYKIFRISEVYTEDSFGYPEEGERKVEVYELG
IDVWRELDHVDQQLPKLFWMTSSMPYNGTYHWIITLSYEHRLILLCFDMS
TEIFRYMKTPNTRYFSSGTRHSLVLLNDCLSFMCHPFPGPEIDPTKDLID
IWMMKDYNIYESWINIYTIRILPIHEFPLAIWKDSLLFFQGKTGYLMSYN
LNTDEVKELSLNGCKRSMRAIVYTESLAPIPEGSESSTQVHNFooo
>C4
MMDGTMKKLPEDMRIYILLRLPVKSLTRFKCVTKSWHTLIQSFNFINFHL
NQKSTTKDEFILFRRSIKHPDGFSHVLSFLVDHEGKDDLDPICPDIDMPY
LTTGFASSTSHQFTGPTNGLILLTDSLNFLLLNPATRSYRLLPPNPFCCP
RGFLRLIYGVGFGYDSIQKTYKVIRVSRVYGDPPYNDRSEMSWESEVYDS
STDSWRQLANVDQELPGPYMHPYSELFYKGTFHWYAQGHMRLLLCFDINT
EIFHTMQVPKTCASRDEKCHSLVVFDECLTFICYPDPRRESSPVQETIEI
WIMQEYSISESWIKKYTIRPPPIESPLAIWKDRLLLLQDKSGVLIAYDLN
SDEVKEFKLHGHPESLRVIVYKESLTPIPIGSTQVERFoooooooo
>C5
MMADGVVKKLPKDVVNNITLKLPVKSLLRFKCVSQFWYAYIQSWTFIILH
RNCASSVNDEIILFKRSFKEEHDHFKSIMSFLSSGHDSDDFQHVSPDLEV
PYLTNTTSCTFHRFIGPCHGLIVLTDKVTAVLFNPATRNYRLLKPSPFGS
PLGFHRSINGIAFGFDSIANEYKIVRLAELRGEPPFYCYSMREWRVEVYE
LRIDSWREVENVDQQLPYVHWYPCAELFYKGTSHWFGNTNTVVILGFDMS
TETFRNIKMPNTCHFKDRKCYGLVVLNESLTLICYPYPGCEIDPAIDFME
IWIMKEYGVNDSWSKKYTIIPLAIESPLAIWKNHLLLLQSVTGHLISYNF
NFDEIKEFKLHGWPKSLRVKIYEESLTLIPKESEFNTAQYoooooo
>C6
MGDEIVEKLPKDIVIYIFLMVLVKSLVRFKCVSKDWYTLIQSSTFISLHF
NRTTTTTKDEYMLVKRSFKEESNRFRSVMSFLSGGLDDDDDLYPVSPDLD
VPFLTTTNSCTFHRIMGPCNGLIVLTDKITTVLFNPATRSYRLLQPGRFG
CPVGFHRSINGVGFGFDSVANSYKIVRIAEVNGEPPFYCYTMREWKVEIY
EFSVDAWREQDQVYRQLPNVFWYPCFEMFYKGASHWFAHANTIVILCFDI
ITETFRSIKFPNTCHFQDENCYSLVILNDSLTLICYPYPEKVVEYEKDFM
EIWIMMEYGVDESWIKKYSITPLSIETPLAVWKDHLLLLESRSGSLISYD
LNSGEVKELNLHCWPPSFRIAVYQESLTLIPEEREHSTKCPKILES
>C7
MADEIVIKLPKDVVMYILLKFPVKSLLRFKRVSRNLYTLIQSSIFINLHL
NRNITANDDLILFKRSLKEEPNLFRSIMSFLSSFHDDYNLHHVSPDLDVP
YLTNTGGCTFHRFMGPCHGLIVLTDCEETVLFNPSTRNYRLLQPSPYDSP
LGFHRSINGIAFGFDSIGNEYKIARLAELSGEPPFNCFTMKEWRVEVYEL
SIDSWREIENVDQQLPYVHWYPCGELFYKGASHWFGHANRARVILCFDMS
TETFRDIKMPNTCHYKDRKCYGLVVLNECLTLICYPYPGCVINPAIDFME
IWVMKEYGVSESWNMKYKITPLAIESPLAIWKDHLLLLQSISGYLISYDL
NTDEVKEFNLNGWPESLRVNVYKESLALIPKCEHNIHLSIoooooo
>C8
MVEGLLKTLPNDLTIYILLILPVKALMRLKCVSKTCYTLIQSSAFVDLHL
NRKTTSKDECILLKRSLEEGINRYKTSLSFLCGDDHDYLSPIIHDVDVTH
LTTNCNFCHDQLVGPCHGLIALMHSPTTVLFNPSTRKYKLLPPSPLRHLK
GFYRSMEGEGFGFDSIINNYKVVKISTIYKVDHFDYLEEIGRKVEVYDLS
TDSWRELDHVAQELTTLCCVECTQMFYKGACHWIATQDLDAFRILCFDMS
SEVFRSLKIPENCHLFEGPWCRLALIQESLTLIYYRYPDQSTAQGKDSSV
VWIMKDYSVHESWVKNYTITSVPIHSPLAVWKGYLLVFEGKSGCLMSYDL
ICNKIKELNFHGFPESLRALVYKDSLISIPIGSEHSAQVHRFoooo
>C9
MANGILKKLPEDLVFLILLTLPVKSLMRFKCIAKAWSILIQSTTFINRYV
NRKTNTKDEFVLFKRAIKDDEEEFINILSFFSGHDDVLTPLFPDIDVSYM
TSKCDCTFNPLIGPCDGLIALTDSIITIIFNPATRNFRVLPPSPFGCPKG
YHRSVEGVGFGLDTISNYYKVVRISEVYCEEADGYPGPKVSKIDVCDLSA
DSWRELDHVKLPSIYWVPCSGILYKEMVHWFATTDVMIILCFDMSTEMFR
NIKMPDTCSIITHELYYGLVILCESFTLIGYSNPISSVDPAHDRMHIWVM
MEYGVSESWIMKYTIRPLSIESPLAVWKNHILLLQSRSGLLISYDLNSGE
AKELNLHGFPDSLSVQVYKECLTSIPKGSEYSTKVQKFoooooooo
>C10
MTAMKKLPIDVVINILFRLPVKSLARFKCVTKSWYSLIQSADFINRHLNR
ATTITDEFILFKRSFKEQEGFRNVMSFLVGGAGEDDLDPVSPDVDVPYLS
TSYSCICHQLTGPCHGLILLTDSTNLVLLNPATRNYRLLPPSPFGIQRGF
YRSVAGVGFGYDSVHKTYKVVRISEVYGEPPFNCPSVMEWKGEVYNSSTD
SWRELDCVDQELPWPYNFAYSEIFYEGAFHWYAHKNVVLILCFDVNTETF
RTMEVPEPCASYDEKCHSLLVLDEFLTLFCYPDPRRESSPIQETIEIWTM
QEYRVNESWIKKHTIKSPPIESPLAIWKDRLLLFQDKSGILISYDLNSDE
VKEFKLDGYPATLRVIIYKESLTPIPKGSTQVQNFooooooooooo
>C11
MPDRIIMKLPQDVFIYILLRLPVKLLLRFRCVSKSCYELIQSSTFINIHL
HRTTTSEDEYILFKRSFKEDVESYKGIFSFYSSHNDDGDMNSIFPDLDIP
NMTSLYSIDYDKIIGPCHGLIAVMDSSSTILFNPSTRKYRLLPSSPFGIP
KGYYRSIDSGGFGFDSVVNDYKVFRISDVYTEDRYGYPEEGEIKVEVYEV
GIDIWRELDHVDQDLPRLFWLTSSMYYNGAYHWITTSNHEDELIILCFDM
STEIFRNINTPDTRQFSSGTCHSLVLLDKCLSFMCHPYLGPEIDPTTDLI
DIWMMKDYNVYESWTKKYTIRVLPIDESPLAVWKDSLLFFQGKSGYLMSY
GFKSEEVQEWNLHGCQKSMRAIVYKESLVPVPRGIQCSTQLRNIoo
>C12
MKMPHGIMKKLPEDVILCIFLRIPVKSLMRFKCVSKNYYTLLQSTTFVNF
HLNRTTTVKDEFILLKRSFKEDINQYKTIFSFLSGGVDHDYLNPIFPDFD
VPNMTDTQSIIFDQLIGPCNGLIALMDDLTTIIFNPSTRNFRLLPPSPFD
RPKGYHRSIKCLGFGFDSVVNDYKVVRISEFLKDDCYGYVQVEEENVEIY
ELGIDCWRELDHINQQFPTIFWVPCSQIFHMGTFHWIAQRVILCFNMSTE
IFQHIRMPDPCHNIRNHSLVILNQSLTLICYRSVAPTSDPIEDLMEIWIL
EDYGVFESWVMKYTIRSLPIKIPLAIWKDNLLLFQSRSGYLMVYDLRTDN
VKELNIHGCPESMRVTVYKENLTIIPSGSENKTPVHKFoooooooo
>C13
MADGIVKKLSEDVVIFIFFRLPVKSLLRFKFVSKSFFTLIQSSTFITLYL
YNTTSSRDEYVLLKRCFIQENNQYKTILSFLAGDDDDYLNPIFQDLDVTH
LTSTRNCDHDQLIGPCHGLMALMDTQTTILFNPSTRNYRPLRPSPFGCPQ
GFHRCIQAVGFGFDTVSNDYKVVRISIIYKVDYDDEYPEERDRKFEVYDL
GIDYWRELENLSQELTTFCVTHCSQMFYKGACHWIASLDIDAYIILCFDM
SSETFRSLKIPESCHIINGPTCRLALVHDTLTLIYYPYPETEIPVEKDVI
NIWFMKEYNVYESWIRKYTIRGLLIDSPLTVWKGYLLLYQSRSGCLMSYN
LNNKDVRELNFNGYTKSLRAIVYKDSLTSIPRESEHTKQVYKFooo
>C14
MLDGIMKHLPKDIAMYILLRFPVKSLLRFKFISKSWSTLIESSTFINIHL
KRATTTNNEFLLFSRSYREETEGFKNVLSILSGGNNDDLMPVVSDLEQPY
LTFTEYYLFNKLVGPCNGLIVLTDFEIIVLFNPATKNYMLIPPSPFVCPK
GFHRSFRGGVGFGFDSIVKDYKFVTISEVFKNSEWGPDEKEQKVEVYDMR
IDSWRDLNHVDLQLPTVYYYPCFEMLYNGAFHWYAINDRFDHVILSFDIS
TEIFHSIKMPATGKSSGGKKYCLIVLNESLTLICYPNPDCEMDPTKDSMD
IWIMMEYGAYESWTKKYIIKPLPIESPLTIWRDHLLLLQSKRGLLVSYDL
SSNEVKEFDLHGHPKSLRVLVYKESLISLPKRGCEHGTKFKNCooo
>C15
MLDGTMKELPQDVVIYILVMLPVKSLLRFKCSCKTFCNIIKSSTFINLHL
NYTTNVMDELVLLKRSFKTDEYNFYKSILSFLSSKEDYDFTPISTDVEIP
HLTTTSACVFHQLIGPCNGLIALTDSLTTIVFNPSTRKYRLIPPCPFGIA
RGFRRSISGIGFGFDADAKDYKVVRLSEVYKEPCDKEMKVDIYDFSVDSW
RELLGQEVPIVYWLPCAEILYKRNFHWFAFSDDVIILCFDMNTEKFHNMG
MPDACHFDDGKCYGLVILCKCMTLICYPDPMPSSPTEKLTDIWIMKEYGE
KESWIKRCSIRLLPESPLAGWKDEILLLQSKMGHLIAYDHNSDEVKELDL
HGLPTSLRVIIYRESLTPIPRSKDSIELEQFooooooooooooooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=15, Len=427
C1 -------MKELPQDVVIYIFVMLPVKSLLRFKCTDKTFCHIIKSSTFINL
C2 --MVDGIMKKFHEDVLIYILLRLPVKSLIRLKCISKTWYTLIQSSTFINL
C3 --MPDGIIMKLHQDIIIYMLLRLPVKFLLRFKCISKYCYTLTKSSTFINI
C4 --MMDGTMKKLPEDMRIYILLRLPVKSLTRFKCVTKSWHTLIQSFNFINF
C5 -MMADGVVKKLPKDVVNNITLKLPVKSLLRFKCVSQFWYAYIQSWTFIIL
C6 --MGDEIVEKLPKDIVIYIFLMVLVKSLVRFKCVSKDWYTLIQSSTFISL
C7 --MADEIVIKLPKDVVMYILLKFPVKSLLRFKRVSRNLYTLIQSSIFINL
C8 --MVEGLLKTLPNDLTIYILLILPVKALMRLKCVSKTCYTLIQSSAFVDL
C9 --MANGILKKLPEDLVFLILLTLPVKSLMRFKCIAKAWSILIQSTTFINR
C10 ----MTAMKKLPIDVVINILFRLPVKSLARFKCVTKSWYSLIQSADFINR
C11 --MPDRIIMKLPQDVFIYILLRLPVKLLLRFRCVSKSCYELIQSSTFINI
C12 MKMPHGIMKKLPEDVILCIFLRIPVKSLMRFKCVSKNYYTLLQSTTFVNF
C13 --MADGIVKKLSEDVVIFIFFRLPVKSLLRFKFVSKSFFTLIQSSTFITL
C14 --MLDGIMKHLPKDIAMYILLRFPVKSLLRFKFISKSWSTLIESSTFINI
C15 --MLDGTMKELPQDVVIYILVMLPVKSLLRFKCSCKTFCNIIKSSTFINL
: : *: : . . ** * *:: : :* *:
C1 HLNH-TTNFNDELVLLKRSFETDEYNFYKSILSFLFAK--EDYDFKPISP
C2 HLNR-TTTYNDELIFFKRSIK-LEPDLFKNILSFLSSD--NEDDLTPVYP
C3 HLNR-ATTSEDEYILFKRSFK-EDVERYKGIFSFLSSN--NGDDLNSIFP
C4 HLNQ-KSTTKDEFILFRRSIK--HPDGFSHVLSFLVDH-EGKDDLDPICP
C5 HRNC-ASSVNDEIILFKRSFK-EEHDHFKSIMSFLSSG-HDSDDFQHVSP
C6 HFNRTTTTTKDEYMLVKRSFK-EESNRFRSVMSFLSGGLDDDDDLYPVSP
C7 HLNR-NITANDDLILFKRSLK-EEPNLFRSIMSFLSSF-HDDYNLHHVSP
C8 HLNR-KTTSKDECILLKRSLE-EGINRYKTSLSFLCGD--DHDYLSPIIH
C9 YVNR-KTNTKDEFVLFKRAIK-DDEEEFINILSFFSGH---DDVLTPLFP
C10 HLNR-ATTITDEFILFKRSFK--EQEGFRNVMSFLVGG-AGEDDLDPVSP
C11 HLHR-TTTSEDEYILFKRSFK-EDVESYKGIFSFYSSH-NDDGDMNSIFP
C12 HLNR-TTTVKDEFILLKRSFK-EDINQYKTIFSFLSGG-VDHDYLNPIFP
C13 YLYN-TTSSRDEYVLLKRCFI-QENNQYKTILSFLAGD--DDDYLNPIFQ
C14 HLKR-ATTTNNEFLLFSRSYR-EETEGFKNVLSILSGG--NNDDLMPVVS
C15 HLNY-TTNVMDELVLLKRSFKTDEYNFYKSILSFLSSK--EDYDFTPIST
: . :: ::. *. : : :*: : :
C1 DVEIPHLTTTA-ACICHRLIGPCNGLIVLTDSLTTIVFNPATLKYRLIPP
C2 DIDVPYLTSDY-CSRFHQLIGPCRGLIALTDFTVIVLLNPATRKYRLLPG
C3 DLDVPNMTSLY-SITQDKLIGPCHGLVAVMNVSSTILLNPATRKYRLLPS
C4 DIDMPYLTTGFASSTSHQFTGPTNGLILLTDSLNFLLLNPATRSYRLLPP
C5 DLEVPYLTNTT-SCTFHRFIGPCHGLIVLTDKVTAVLFNPATRNYRLLKP
C6 DLDVPFLTTTN-SCTFHRIMGPCNGLIVLTDKITTVLFNPATRSYRLLQP
C7 DLDVPYLTNTG-GCTFHRFMGPCHGLIVLTDCEETVLFNPSTRNYRLLQP
C8 DVDVTHLTTNC-NFCHDQLVGPCHGLIALMHSPTTVLFNPSTRKYKLLPP
C9 DIDVSYMTSKC-DCTFNPLIGPCDGLIALTDSIITIIFNPATRNFRVLPP
C10 DVDVPYLSTSY-SCICHQLTGPCHGLILLTDSTNLVLLNPATRNYRLLPP
C11 DLDIPNMTSLY-SIDYDKIIGPCHGLIAVMDSSSTILFNPSTRKYRLLPS
C12 DFDVPNMTDTQ-SIIFDQLIGPCNGLIALMDDLTTIIFNPSTRNFRLLPP
C13 DLDVTHLTSTR-NCDHDQLIGPCHGLMALMDTQTTILFNPSTRNYRPLRP
C14 DLEQPYLTFTE-YYLFNKLVGPCNGLIVLTDFEIIVLFNPATKNYMLIPP
C15 DVEIPHLTTTS-ACVFHQLIGPCNGLIALTDSLTTIVFNPSTRKYRLIPP
*.: . :: . : ** **: : . :::**:* .: :
C1 CPFGIPRGFRRSIS-GIGFGFDSDANDYKVVRLSEVYKEPCDK------E
C2 SPFVCPKGFTFVTR-GVGFGYSTAENYYKLVRIFEVYTDPYDR-DLDARH
C3 SPFGVPKGFYRNIE-NGGFGFDAVVNDYKIFRISEVYTEDSFG-YPEEGE
C4 NPFCCPRGFLRLIY-GVGFGYDSIQKTYKVIRVSRVYGDPPYN-DRSEMS
C5 SPFGSPLGFHRSIN-GIAFGFDSIANEYKIVRLAELRGEPPFY-CYSMRE
C6 GRFGCPVGFHRSIN-GVGFGFDSVANSYKIVRIAEVNGEPPFY-CYTMRE
C7 SPYDSPLGFHRSIN-GIAFGFDSIGNEYKIARLAELSGEPPFN-CFTMKE
C8 SPLRHLKGFYRSME-GEGFGFDSIINNYKVVKISTIYKVDHFD-YLEEIG
C9 SPFGCPKGYHRSVE-GVGFGLDTISNYYKVVRISEVYCEEADG-YPGPKV
C10 SPFGIQRGFYRSVA-GVGFGYDSVHKTYKVVRISEVYGEPPFN-CPSVME
C11 SPFGIPKGYYRSID-SGGFGFDSVVNDYKVFRISDVYTEDRYG-YPEEGE
C12 SPFDRPKGYHRSIK-CLGFGFDSVVNDYKVVRISEFLKDDCYG-YVQVEE
C13 SPFGCPQGFHRCIQ-AVGFGFDTVSNDYKVVRISIIYKVDYDDEYPEERD
C14 SPFVCPKGFHRSFRGGVGFGFDSIVKDYKFVTISEVFKNSEWG--PDEKE
C15 CPFGIARGFRRSIS-GIGFGFDADAKDYKVVRLSEVYKEPCDK------E
*: .** .: : **. : .
C1 MKVDIYDFSVDSWREL--LGQDVPFVFWFPCAEILYKRNFHWF---AFAD
C2 SKVEIYDSCTDCWRDLDLTVKLLPKVRRFACSETFYKEAFHWC---AHDD
C3 RKVEVYELGIDVWRELDHVDQQLPKLFWMTSS-MPYNGTYHWIITLSYEH
C4 WESEVYDSSTDSWRQLANVDQELPGPYMHPYSELFYKGTFHWY---AQGH
C5 WRVEVYELRIDSWREVENVDQQLPYVHWYPCAELFYKGTSHWF---GNTN
C6 WKVEIYEFSVDAWREQDQVYRQLPNVFWYPCFEMFYKGASHWF---AHAN
C7 WRVEVYELSIDSWREIENVDQQLPYVHWYPCGELFYKGASHWF---GHAN
C8 RKVEVYDLSTDSWRELDHVAQELTTLCCVECTQMFYKGACHWI---ATQD
C9 SKIDVCDLSADSWRELDHV--KLPSIYWVPCSGILYKEMVHWF---ATTD
C10 WKGEVYNSSTDSWRELDCVDQELPWPYNFAYSEIFYEGAFHWY---AHKN
C11 IKVEVYEVGIDIWRELDHVDQDLPRLFWLTSS-MYYNGAYHWITTSNHED
C12 ENVEIYELGIDCWRELDHINQQFPTIFWVPCSQIFHMGTFHWI---AQR-
C13 RKFEVYDLGIDYWRELENLSQELTTFCVTHCSQMFYKGACHWI---ASLD
C14 QKVEVYDMRIDSWRDLNHVDLQLPTVYYYPCFEMLYNGAFHWY---AIND
C15 MKVDIYDFSVDSWREL--LGQEVPIVYWLPCAEILYKRNFHWF---AFSD
. :: : * **: .. : **
C1 VV--VILCFEMNTEKFHNMGMPDACH-FADGKCYGLVILFKCMTLICYPD
C2 TV--MILCFDIRLETFHYMKLPDHCH-FWDNKGYGLTVLSNYLTFITYPN
C3 RL--ILLCFDMSTEIFRYMKTPNTRY-FSSGTRHSLVLLNDCLSFMCHPF
C4 MR--LLLCFDINTEIFHTMQVPKTCA-SRDEKCHSLVVFDECLTFICYPD
C5 TV--VILGFDMSTETFRNIKMPNTCH-FKDRKCYGLVVLNESLTLICYPY
C6 TI--VILCFDIITETFRSIKFPNTCH-FQDENCYSLVILNDSLTLICYPY
C7 RA-RVILCFDMSTETFRDIKMPNTCH-YKDRKCYGLVVLNECLTLICYPY
C8 LDAFRILCFDMSSEVFRSLKIPENCH-LFEGPWCRLALIQESLTLIYYRY
C9 VM--IILCFDMSTEMFRNIKMPDTCSIITHELYYGLVILCESFTLIGYSN
C10 VV--LILCFDVNTETFRTMEVPEPCA-SYDEKCHSLLVLDEFLTLFCYPD
C11 EL--IILCFDMSTEIFRNINTPDTRQ-FSSGTCHSLVLLDKCLSFMCHPY
C12 ----VILCFNMSTEIFQHIRMPDPCH---NIRNHSLVILNQSLTLICYRS
C13 IDAYIILCFDMSSETFRSLKIPESCH-IINGPTCRLALVHDTLTLIYYPY
C14 RFDHVILSFDISTEIFHSIKMPATGK-SSGGKKYCLIVLNESLTLICYPN
C15 DV--IILCFDMNTEKFHNMGMPDACH-FDDGKCYGLVILCKCMTLICYPD
:* *:: * *: : * * :. . :::: :
C1 PMPS-SPTEKLTDIWIMKEYGEKESWIKRCSIRLLP--ESPLAVWKDEIL
C2 PRCALDPGQEFTDIWIMEEYGANGTWIKKYTIGPLPI-ESSLSILKDHLL
C3 PGPEIDPTKDLIDIWMMKDYNIYESWINIYTIRILPIHEFPLAIWKDSLL
C4 PRRESSPVQETIEIWIMQEYSISESWIKKYTIRPPPI-ESPLAIWKDRLL
C5 PGCEIDPAIDFMEIWIMKEYGVNDSWSKKYTIIPLAI-ESPLAIWKNHLL
C6 PEKVVEYEKDFMEIWIMMEYGVDESWIKKYSITPLSI-ETPLAVWKDHLL
C7 PGCVINPAIDFMEIWVMKEYGVSESWNMKYKITPLAI-ESPLAIWKDHLL
C8 PDQSTAQGKDSSVVWIMKDYSVHESWVKNYTITSVPI-HSPLAVWKGYLL
C9 PISSVDPAHDRMHIWVMMEYGVSESWIMKYTIRPLSI-ESPLAVWKNHIL
C10 PRRESSPIQETIEIWTMQEYRVNESWIKKHTIKSPPI-ESPLAIWKDRLL
C11 LGPEIDPTTDLIDIWMMKDYNVYESWTKKYTIRVLPIDESPLAVWKDSLL
C12 VAPTSDPIEDLMEIWILEDYGVFESWVMKYTIRSLPI-KIPLAIWKDNLL
C13 PETEIPVEKDVINIWFMKEYNVYESWIRKYTIRGLLI-DSPLTVWKGYLL
C14 PDCEMDPTKDSMDIWIMMEYGAYESWTKKYIIKPLPI-ESPLTIWRDHLL
C15 PMPS-SPTEKLTDIWIMKEYGEKESWIKRCSIRLLP--ESPLAGWKDEIL
. :* : :* :* * . .*: :. :*
C1 LLHSKTGHLIAYDFNSNEVQELDLHGYPESLRIIIYRESLTAIP--RNND
C2 LLQSTSGTLSSYNLSSDELKEFNFQGFISTLRLVVYKESLTIIP-RESEH
C3 FFQGKTGYLMSYNLNTDEVKELSLNGCKRSMRAIVYTESLAPIP-EGSES
C4 LLQDKSGVLIAYDLNSDEVKEFKLHGHPESLRVIVYKESLTPIP-IGSTQ
C5 LLQSVTGHLISYNFNFDEIKEFKLHGWPKSLRVKIYEESLTLIP-KESEF
C6 LLESRSGSLISYDLNSGEVKELNLHCWPPSFRIAVYQESLTLIP-EEREH
C7 LLQSISGYLISYDLNTDEVKEFNLNGWPESLRVNVYKESLALIP--KCEH
C8 VFEGKSGCLMSYDLICNKIKELNFHGFPESLRALVYKDSLISIP-IGSEH
C9 LLQSRSGLLISYDLNSGEAKELNLHGFPDSLSVQVYKECLTSIP-KGSEY
C10 LFQDKSGILISYDLNSDEVKEFKLDGYPATLRVIIYKESLTPIP-KGSTQ
C11 FFQGKSGYLMSYGFKSEEVQEWNLHGCQKSMRAIVYKESLVPVP-RGIQC
C12 LFQSRSGYLMVYDLRTDNVKELNIHGCPESMRVTVYKENLTIIP-SGSEN
C13 LYQSRSGCLMSYNLNNKDVRELNFNGYTKSLRAIVYKDSLTSIP-RESEH
C14 LLQSKRGLLVSYDLSSNEVKEFDLHGHPKSLRVLVYKESLISLPKRGCEH
C15 LLQSKMGHLIAYDHNSDEVKELDLHGLPTSLRVIIYRESLTPIP--RSKD
. .. * * *. . :* .:. :: :* : * :*
C1 CIELQNFRCNooooooooooooooooo
C2 GTKVQTFoooooo--------------
C3 STQVHNFooo-----------------
C4 VERFoooooooo---------------
C5 NTAQYoooooo----------------
C6 STKCPKILES-----------------
C7 NIHLSIoooooo---------------
C8 SAQVHRFoooo----------------
C9 STKVQKFoooooooo------------
C10 VQNFooooooooooo------------
C11 STQLRNIoo------------------
C12 KTPVHKFoooooooo------------
C13 TKQVYKFooo-----------------
C14 GTKFKNCooo-----------------
C15 SIELEQFooooooooooooooo-----
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
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INPUT FILES
Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 15 SEQUENCES [PROTEIN]
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C10 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C11 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C12 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C13 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C14 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C15 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C7 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C8 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C9 Length 396 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 15 SEQUENCES [PROTEIN]
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C10 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C11 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C12 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C13 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C14 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C15 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C7 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C8 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C9 Length 396 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 15 SEQUENCES [PROTEIN]
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C10 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C11 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C12 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C13 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C14 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C15 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C7 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C8 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C9 Length 396 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 15 SEQUENCES [PROTEIN]
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C10 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C11 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C12 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C13 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C14 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C15 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C7 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C8 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C9 Length 396 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 15 SEQUENCES [PROTEIN]
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C10 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C11 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C12 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C13 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C14 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C15 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C7 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C8 Length 396 type PROTEIN Struct Unchecked
Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C9 Length 396 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File 