--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Sat Dec 10 13:13:20 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/443/zetaCOP-PC/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -1328.57 -1345.71 2 -1330.08 -1347.49 -------------------------------------- TOTAL -1329.06 -1346.95 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.812469 0.017083 0.565368 1.071394 0.803883 1099.72 1135.93 1.000 r(A<->C){all} 0.083050 0.000901 0.029370 0.143340 0.080460 854.59 862.69 1.003 r(A<->G){all} 0.270828 0.004037 0.149900 0.397122 0.265829 671.76 720.90 1.001 r(A<->T){all} 0.173790 0.004304 0.047417 0.298054 0.168000 502.53 586.54 1.003 r(C<->G){all} 0.090911 0.000634 0.042961 0.139420 0.088329 895.41 947.16 1.000 r(C<->T){all} 0.346649 0.003951 0.226859 0.468267 0.343580 669.28 674.70 1.000 r(G<->T){all} 0.034772 0.000495 0.000043 0.078070 0.030445 789.58 896.37 1.001 pi(A){all} 0.246511 0.000347 0.210823 0.283027 0.246598 840.23 974.44 1.002 pi(C){all} 0.295129 0.000386 0.259351 0.335633 0.294347 1219.06 1256.28 1.000 pi(G){all} 0.255968 0.000366 0.217506 0.293281 0.255881 992.63 1172.40 1.001 pi(T){all} 0.202392 0.000304 0.169267 0.236723 0.202540 1034.59 1085.09 1.000 alpha{1,2} 0.088100 0.000351 0.055710 0.128792 0.088032 1116.18 1138.74 1.000 alpha{3} 2.539638 0.687588 1.140779 4.174147 2.406027 1130.41 1242.44 1.000 pinvar{all} 0.540672 0.002673 0.429888 0.631966 0.542966 1029.46 1143.55 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -1131.01823 Model 2: PositiveSelection -1131.01823 Model 0: one-ratio -1143.646376 Model 3: discrete -1130.423813 Model 7: beta -1132.536572 Model 8: beta&w>1 -1132.537981 Model 0 vs 1 25.25629200000003 Model 2 vs 1 0.0 Model 8 vs 7 0.002817999999933818
>C1 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV LENLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDIPIAEQTVAQVL QSAREQLKWSILK >C2 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV LDNLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDIPIAEQTVAQVL QSAREQLKWSILK >C3 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV LENLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDIPIAEQTVAQVL QSAREQLKWSILK >C4 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV LDNLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDIPIAEQTVAQVL QSAREQLKWSILK >C5 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV LEYLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDIPIAEQTVAQVL QSAREQLKWSILK >C6 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV LENLEIIMLAFDEICDGGIILDADPSSIVKRVDLRNDDIPIAEQTVAQVL QSAREQLKWSILK >C7 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV LENLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDIPIAEQTVAQVL QSAREQLKWSILK >C8 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV LENLEIIMLAFDEICDGGMILDADPSSVVKRVDLRNDDIPIAEQTVAQVL QSAREQLKWSILK >C9 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV LENLEIIMLAFDEICDGGMILDADPSSVVKRVDLRNDDIPIAEQTVAQVL QSAREQLKWSILK >C10 MCIMDNDGDRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV LDNLEIIMLAFDEICDGGMILDADPSSVVKRVDLRNDDIPIAEQTVAQVT ooooooooooooo >C11 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV LENLEIIMLAFDEICDGGMILDADPSSVVKRVDLRNDDIPIAEQTVAQVL QSAREQLKWSILK CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=11, Len=163 C1 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG C2 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG C3 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG C4 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG C5 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG C6 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG C7 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG C8 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG C9 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG C10 MCIMDNDGDRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG C11 MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDG ********:***************************************** C1 LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV C2 LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV C3 LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV C4 LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV C5 LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV C6 LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV C7 LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV C8 LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV C9 LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV C10 LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV C11 LTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLV ************************************************** C1 LENLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDIPIAEQTVAQVL C2 LDNLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDIPIAEQTVAQVL C3 LENLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDIPIAEQTVAQVL C4 LDNLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDIPIAEQTVAQVL C5 LEYLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDIPIAEQTVAQVL C6 LENLEIIMLAFDEICDGGIILDADPSSIVKRVDLRNDDIPIAEQTVAQVL C7 LENLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDIPIAEQTVAQVL C8 LENLEIIMLAFDEICDGGMILDADPSSVVKRVDLRNDDIPIAEQTVAQVL C9 LENLEIIMLAFDEICDGGMILDADPSSVVKRVDLRNDDIPIAEQTVAQVL C10 LDNLEIIMLAFDEICDGGMILDADPSSVVKRVDLRNDDIPIAEQTVAQVT C11 LENLEIIMLAFDEICDGGMILDADPSSVVKRVDLRNDDIPIAEQTVAQVL *: ***************:********:********************* C1 QSAREQLKWSILK C2 QSAREQLKWSILK C3 QSAREQLKWSILK C4 QSAREQLKWSILK C5 QSAREQLKWSILK C6 QSAREQLKWSILK C7 QSAREQLKWSILK C8 QSAREQLKWSILK C9 QSAREQLKWSILK C10 ooooooooooooo C11 QSAREQLKWSILK PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 163 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 11 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 163 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zetaCOP-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 163 type PROTEIN Struct Unchecked Input File /opt/