--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Fri Dec 09 14:21:21 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/442/Zasp52-PM/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/442/Zasp52-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/442/Zasp52-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/442/Zasp52-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1     -10733.80        -10746.91
2     -10733.26        -10750.78
--------------------------------------
TOTAL   -10733.49        -10750.11
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/442/Zasp52-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/442/Zasp52-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/442/Zasp52-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.488619    0.000775    0.431945    0.541041    0.488171   1291.60   1317.80    1.001
r(A<->C){all}   0.069039    0.000090    0.050101    0.086789    0.068911   1143.99   1196.69    1.000
r(A<->G){all}   0.232536    0.000348    0.200098    0.273092    0.231501    993.29   1008.72    1.001
r(A<->T){all}   0.171144    0.000363    0.133126    0.207815    0.169904    628.90    837.75    1.000
r(C<->G){all}   0.056965    0.000057    0.042350    0.071811    0.056576   1139.55   1162.96    1.000
r(C<->T){all}   0.395643    0.000547    0.350439    0.442532    0.395458    832.30    840.05    1.000
r(G<->T){all}   0.074674    0.000144    0.051806    0.098234    0.074303   1028.35   1034.89    1.000
pi(A){all}      0.233137    0.000040    0.219915    0.244558    0.233104    982.72   1101.39    1.000
pi(C){all}      0.341011    0.000048    0.328134    0.354577    0.341039    986.37   1061.60    1.000
pi(G){all}      0.256865    0.000042    0.244485    0.269933    0.257020   1077.79   1079.01    1.000
pi(T){all}      0.168987    0.000028    0.159219    0.179779    0.168990    855.56    993.10    1.000
alpha{1,2}      0.148886    0.000281    0.117859    0.182864    0.148416   1296.62   1320.57    1.001
alpha{3}        4.217230    1.113781    2.266119    6.261852    4.096735   1421.67   1448.88    1.000
pinvar{all}     0.439584    0.001062    0.382881    0.507157    0.440902   1236.31   1250.91    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-9420.353737
Model 2: PositiveSelection	-9418.794198
Model 0: one-ratio	-9513.880162
Model 3: discrete	-9418.049544
Model 7: beta	-9421.752682
Model 8: beta&w>1	-9418.179504


Model 0 vs 1	187.05285000000003

Model 2 vs 1	3.1190779999997176

Model 8 vs 7	7.146356000001106

Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Zasp52-PM)

            Pr(w>1)     post mean +- SE for w

   231 L      0.740         1.879
   479 E      0.871         2.122
   575 K      0.887         2.151
   819 A      0.632         1.682
  1015 S      0.989*        2.338
  1021 T      0.806         2.001
  1022 K      0.564         1.555

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Zasp52-PM)

            Pr(w>1)     post mean +- SE for w

   231 L      0.914         1.426 +- 0.261
   251 Q      0.602         1.063 +- 0.564
   340 T      0.747         1.254 +- 0.441
   408 P      0.603         1.065 +- 0.563
   455 Q      0.778         1.273 +- 0.447
   456 S      0.730         1.214 +- 0.493
   457 S      0.655         1.149 +- 0.507
   460 S      0.674         1.177 +- 0.484
   479 E      0.950*        1.461 +- 0.190
   564 A      0.608         1.071 +- 0.561
   575 K      0.957*        1.466 +- 0.177
   655 N      0.538         0.986 +- 0.583
   809 S      0.646         1.117 +- 0.543
   819 A      0.900         1.414 +- 0.275
   820 Q      0.642         1.117 +- 0.538
   821 T      0.826         1.336 +- 0.375
   904 A      0.733         1.218 +- 0.491
   908 A      0.522         0.966 +- 0.587
   944 S      0.526         0.971 +- 0.586
  1001 L      0.586         1.044 +- 0.568
  1015 S      0.986*        1.491 +- 0.105
  1020 P      0.710         1.191 +- 0.507
  1021 T      0.934         1.445 +- 0.224
  1022 K      0.864         1.375 +- 0.333
  1024 T      0.683         1.159 +- 0.524
  1025 A      0.656         1.129 +- 0.539
  1026 P      0.650         1.120 +- 0.543
  1027 F      0.820         1.331 +- 0.380
  1069 P      0.728         1.212 +- 0.495
  1073 G      0.748         1.236 +- 0.477

>C1
MAQPQLLQIKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPAFGNSHYEHDAPQQLQQPQQQYNQHQQHYHQQQQ
QQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFVRIKDKN
LHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTGTEGYVP
VPIKPNTKLSASTISSALNSHGYGGHSNGYSNGNSTPAPAPVNQGYARPF
GAAAPKSPVSYPPQQQQQSPRPAPGGQNPYATLPRSNVGQQVPPANTSTA
FAPAPAPAPTSIPVRPSAIAVQSSYCSSQFDVHELIEETAEELEHSEVLF
PPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQEL
RENVPLAFVDAPKAPVTSDSSTVHRPIAQVAAPTTVVAPSREREKERRPQ
LSVPIIVEDRSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVP
FYQTEEKLVFEECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRA
PRMKEPETKSNILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQS
YNQQPERITEQRVGNLNIQQREQSSQLQQQAQSQTQSQTRSQVGNTQIER
RRKVTEEFERTQSAKTIEIRTGSQSVSQSKAQSQSISQAQTQAQSQSQNQ
SDTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGEGC
FPNLRSPTFDSKFPLKPAPAESIVPGYATVPAATKMLTAPPPGFLQQQQQ
QQQRSAFSGYQATTSSVQQSSFASSSKATTSSLSSSSASASASASVARSS
QSLTQASAITTTTNNQATTAYRSSNGSITKPNLASRPSIASITAPGSASA
PAPVPSAAPTKATAPFKAPIVPKSVIANAVNAAAPPAPAVFPPDLSDLNL
NSNVDNSPGAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQ
IRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKY
LAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNA
YCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLE
GQSFYNKGGRPFCKNHARoooooooooooooooooooooo
>C2
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLRVEETGQSTPAFGNSHYEHDAPQQVQQQQQPQQQYNQHQQHYHQ
QQQQQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFVRIK
DKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTGTEG
YVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSTPAPAPVNQGYA
RPFGAAAPKSPVSYPPQQQQQSPRPAPGGQNPYATLPRSNVGQQVPPANT
STAFAPAPAPAPTSIPVRPSAIAVQSSYCSQFDAHELIEETAEELEHSEV
LFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQ
ELRENVPLAFVDAPKAPVTSDSSTVHRPIAQVAAPTTVVAPSREREKERR
PQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPI
VPFYQTEEKLVFEECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAI
RAPRMKEPETKSNILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSAS
QSYNQQPERITEQRVGNLNIQQREQSSQLQQQALSQTQSQTRSQVGNTQI
ERRRKVTEEFERTQSAKTIEIRTGSQSVSQSKAQSQSISQAQTQAQSQSQ
NQSDTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGE
GCFPNLRSPTFDSKFPLKPAPAESIVPGYATVPAATKMLTAPPPGFLQQQ
QQQQQRSAFSGYQATTSSVQQSSFASSSKATTSSLSSSSASASASASVAR
SSQSLTQASAITTTTNNQATTAYRSSNGSITKPNLASRPSIASITAPGSA
NAPAPSAASTKATAPFKAPIVPKSVIANAVNAAAPPAPAVFPPDLSDLNL
NSNVDNSPGAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQ
IRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKY
LAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKVFGNRPFFLEDGNA
YCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLE
GQSFYNKGGRPFCKNHARoooooooooooooooooooooo
>C3
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPAFGNSHYEHDAPQQLQQQQQPQQQYNQHQQHYHQ
QQQQQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFVRIK
DKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTGTEG
YVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSTPAPAPVNQGYA
RPFGAAAPKSPVSYPPQQQQQSPRPAPGGQNPYATLPRSNVGQQVPPANT
STAFAPAPAPAPAPAPAPTSTPVRPSAIAVQSSYCSSQFDAHELIEETAE
ELEHSEVLFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLPTQSP
IRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHRPIAQVAAPTTVVAPSR
EREKERRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALTPTRPYTPSL
TNKPAPIVPFYQTEEKLVFEECSATHARNYNELNASPFPDRTRSPAPGPP
PNPLNAIRAPRMKEPETKSNILSVSGGPRLQTGSITTGQSYQGQLLAHSE
QSSQSASQSYNQQPERITEQRVGNLNIQQREQSSQLQQQAQSQTQSQTRS
QVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVSQSKAQSQSISQAQT
QAQSQSQNQSDTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISA
RASALGEGCFPNLRSPTFDSKFPLKPAPAESIVPGYATVPAATKMLTAPP
PGFLQQQQQQQQRSAFSGYQATTSSVQQSSFASSSKATTSSLSSSSASAS
ASASVARSSQSLTQASAITTTTNNQATTAYRSSNGSITKPNLASRPSIAS
ITAPGSANAPAPVPSAAPTKATAPFKAPIVPKSVIANAVNAAAPPAPAVF
PPDLSDLNLNSNVDNSPGAGGKSAGAFGATSAPKRGRGILNKAAGPGVRI
PLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDL
YCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNR
PFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFN
CTFCKQNLEGQSFYNKGGRPFCKNHARooooooooooooo
>C4
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPAFGNSHYEHDAPQQQQQQYQQPQQQYNQHQQHYH
QQQQQQQQQQSSATRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVF
VRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPT
GTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSTPAPAPVN
QGYARPFGAAAPKSPVSYPPQQQQQSPRPGGQNPYATLPRSNVGQQVPPA
TTSTAFAPAPAPAPSLAPVPTSTPVRPSAFAVQSSYCNSQFDAHELIEET
VEELEHSPVLFPPPSPLSHLTKHGKAVQSGLHKADSIPKYQRNWTVLPTQ
SPIRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHRPIAQVAAPTTVVAP
SREREKERRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALTPTRPYTP
SLTNKPAPIVPFYQTEEKLVFEECSATHARNYNELNASPFPDRTRSPAPG
PPPNPLNAIRAPRMREPETKSNILSVSGGPRLQTGSITTGQSYQGQLLAH
SEQSSQSASQSFSQQPERITEQRVGNLNIQQREQSSQLQQQAQSQTQSQT
RSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVSQSRAQSQSISQA
QSQAQYQSQNQSDTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAI
SARASALGEGCFPNLRSPTFDSKFPLKPAPAESIVPGYTTVPAATKMLTA
PPPGFLQQQQQQQQRSAFSGYQATTSSVQQSSFASSSKATTSSLSSSSAS
ASASASASASVARSSQSLTQASAITTTTNNQATTAYRSSNGSITKPNLAS
RPSIASITAPGSANAPAPAPAPSAAPIKATAPFKAPIVPKSVIANAVNAA
APPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGAFGATSAPKRGRGILNK
AAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIG
FVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQ
CGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNH
NYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooooo
>C5
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPAFGNSHYEHDAPQQLQQQQQQQQPQQQYNQHQHQ
QHYHQQQQQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVF
VRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPS
GTEGYVPVPIKPNTKLSASTISSALNSHGYGGSSNGYSNGNSAPAPAPVN
QGYARPFGAAAPKSPVSYPPQQQQQQSPRPAPGGQNPYATLPRSNVGQQV
PPATTSTAFAPAPAPAPASVPAPTSTPLRPSAIAVQSSYCSRQFDAHELI
EETAEELEHSEVLFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVL
PTQSPIRTPEPQELRENVPLAFVDAPKAPVTSDTSTVHRPIAQVAAPTTV
VAPSREREKERRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALTPTRP
YTPSLTNKPAPIVPFYQTEEKLVFEECSATHARNYNELNASPFPDRTRSP
APGPPPNPLNAIRAPRMKEPETKSNILSVSGGPRLQTGSITTGQSYQGQL
LAHSEQSSQSASQSFSQQPERITEQRLGNLSIQQREQSSQLQQQAQSQTQ
SQTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVSQSRAQSQSI
SQAQTQAQSQSQNQSDTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQS
QAISARASALGEGCFPNLRSPTFDSKFPLKPAPAESIVPGYATVPAATKM
LTAPPPGFLQQQQQQRSAFSGYQATTSSVQQSSFASSSKATTSSLSSSSA
SASASASASVARSSQSLTQASAITTTTNNQATTAYRSSNGSITQPNLASR
PSIASITAPGSANAPAPAAAPAPLAAPTRATAPFKAPIVPKSVIANAVNA
AAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGAFGATSAPKRGRGILN
KAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDI
GFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCG
QCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALN
HNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARoooo
>C6
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEESGQSTPAFGNSHYEHDAPRQQQQPQQQYNQQQQHYHQQQQ
QQQSSATRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFVRIKDKN
LHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPSGTEGYVP
VPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSAPAPAPVNQGYARPF
GAAAPKSPVSYPVQQQQQSPRPAPGGNNPYATLPRSNVGQQVPPATSTAC
APAPVQAPAPAPAPAPAPTLAPVSTPVRPPPIAVQSSYCSTQFDAHELIE
ETAEELEHSDVLFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLP
TQSPIRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHKPIAIAQAAPPTT
VVAPSRERETVKPRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALTPT
RPYTPSLTNKPAPIVPFYQTEEKLVFEECAASHARNYNELCASPFPDRTR
SPAPGPPPNPLNAIRAPRMKEPEPKSTILSVSGAPRLQTGSITTGQSYQG
QLLAHSEQSSQSASQSFSQQPERITEQRVGNLSIQQREQSSQLQQQAQSQ
SQSQTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVTQSRGQSQ
AISQNHAQSQNQSDTERRSSYGKTGFVANQAKRLSCLEQEISSLTSQSQA
ISARASALGEGCFPNLRSPTFDSKFPLKPASVESTVPGYGAAPAATDKLT
APPPGFLQQQQQRSAFSGYQATTSAVQQSSYASSSKATSSSLSSSSASAS
TSASVARSSQSLTQASAITTTTNNQATKAFRSSNGSTINANTASRPSIAS
ITAPGSAPAPAAVKATAPLKAPIAPKSVIANAFNAAAPPAPAPAVFPPDL
GDLNLNSNVDDSAGPGAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPL
CNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYC
EYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPF
FLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCT
FCKQNLEGQSFYNKGGRPFCKNHARooooooooooooooo
>C7
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPAFGNSHCEHDAPRQQQQQQPQQQQQYNQQQQHYH
QQQQQQQQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFV
RIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHARQAAINNPPTG
TEGYVPVPIKPNTKLSASTISSALNTHGYGGNSNGYSNGNSAPAPAPVNQ
GYARPFGAAAPKSPVSYPVQQQQQQSPRPAPGGNNPYATLPRSNVGQQVP
PATSTAFAPAPAPAPAPVSTPVRPPALAVQSSYCSTQYDAHELFEETAEE
LEHSPILFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLPTQSPI
RTPEPQELRENVPLAFVDAPKAPVTSDSSTVHRPIAIAQVAPPTTVVAPS
RERERETPKPRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALTPTRPY
TPSLTNKPAPIVPFYQTEEKLVFEECAASHARNYNELCASPFPDRTRSPA
PGPPPNPLNAIRAPRMKEPEPKSTILSVSGAPRLQTGSITTGQSYQGQLL
AHSEQSSQSASQSFSQQPERITEQRVGNLSIQQREQSSQLQQQAQSQSQS
QTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVTQSRGQSQAIS
QSQAQSQAQSQVQSQVQSQNQSDTERRSSYGKTGFVANQAKRLSCLEQEI
SSLTSQSQAISARASALGEGCFPNLRSPTFDSKFPLKPASVESTVPGYGT
APAATDKLMAPPPGFLQQQQQQQQQRSAFSGYQATTSAVQQSSYASSSKA
TSSSLSSSSASASASASVARSSQSLTQASAITTTTNNQATTAFRSSNGST
IKPNPASRPSIASITAPGSANATAPAPVKAIAPLKAPIAPKSVIANAFNA
AAPPAPAPAVFPPDLGDLNLNSNVDDSVGAGAGGKSAGAFGATSAPKRGR
GILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRP
LQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPEC
FTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWV
EALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHAR
>C8
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPAFGNSHYEHDAPQQQQQPQQQQYNQQQHQQQHYH
QQHHQQQQQQQLSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITG
VFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNP
PSGTEGYVPVPIKPNTKLSASTISTALNSHGYGGSNSNGYSNGNSAPAPV
NQGYARPFGAAAPKSPVASYPPQQQQQSPRPAPGGNNNFNNNNAYATLPR
SNVGQQVPPAFAPAPAPAPAPAPPAIAIAVQSSHQHFDAHELIEETAEEL
EHSEVLFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLPTQSPIR
TPEPQELRENVPLAFVDAPKAPAPSDSSAPAVHRPIAQVPTPVVAPSREK
ERERERRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALTPTRPYTPSL
TNKPAPIVPFYQTEEKLVFEECSATHARNYNELCASPFPDRTRSPAPGPP
PNPLNAIRAPRMKEPEPKSTILSVSGAPRLQTGSITTGQSYQGQLLAHSE
QSSQSASQSFSQQPEKITEQRVGNLSIQQREQSSQLQQQAQSQSQSQTRS
QVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSTSQSRGQFQSLSQSRG
QSSSVSQSQAQSQTQSDTERRSSYGKTGFVANQAKRLSCLEQEISSLTSQ
SQAISARASALGEGCFPNLRSPTFDSKFPLKPASAESIVPGYATAPLATE
KLMAPPPGFILQQQQQQRSAFSGYQATSTSSVQQSQKTTSSSLASSSSAS
ASASASASRSSQSLTQASAITTTTNNQATMAYRSSNASTIKPNLASRPSI
ASITAPGSAPAPAPAPSAAPIKAKAPIAPKSVIANAVNAAAPPAPAVFPP
DLSDLNLNSNVDDSAGAGNKSAGAFGATSAPKRGRGILNKAAGPGVRIPL
CNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYC
EYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPF
FLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCT
FCKQNLEGQSFYNKGGRPFCKNHARooooooooooooooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=8, Len=1403 

C1              MAQPQLLQIKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C2              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C3              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C4              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C5              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C6              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C7              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C8              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
                ********:*****************************************

C1              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C2              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C3              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C4              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C5              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C6              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C7              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C8              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
                **************************************************

C1              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
C2              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
C3              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
C4              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
C5              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
C6              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
C7              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
C8              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
                ****************************************:*********

C1              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C2              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C3              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C4              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C5              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C6              IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C7              IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C8              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
                **************:***********************************

C1              EVLKFLREEETGQSTPAFGNSHYEHDAP---QQLQQ---PQQQYN--QHQ
C2              EVLKFLRVEETGQSTPAFGNSHYEHDAP---QQVQQQQQPQQQYN--QHQ
C3              EVLKFLREEETGQSTPAFGNSHYEHDAP---QQLQQQQQPQQQYN--QHQ
C4              EVLKFLREEETGQSTPAFGNSHYEHDAPQ--QQQQQYQQPQQQYN--QHQ
C5              EVLKFLREEETGQSTPAFGNSHYEHDAPQQLQQQQQQQQPQQQYNQHQHQ
C6              EVLKFLREEESGQSTPAFGNSHYEHDAPR--QQQQPQ----QQYN--QQQ
C7              EVLKFLREEETGQSTPAFGNSHCEHDAPR--QQQQQQPQQQQQYN--QQQ
C8              EVLKFLREEETGQSTPAFGNSHYEHDAPQQQQQPQQQQYNQQQHQQQHYH
                ******* **:*********** *****   ** *      **::  : :

C1              QHYHQQQQQQQ---SSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLI
C2              QHYHQQQQQQQ---SSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLI
C3              QHYHQQQQQQQ---SSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLI
C4              QHYHQQQQQQQQQQSSATRHVSAPVNSPKPPSTGGLPTGQNICTECERLI
C5              QHYHQQQQQQS----STTRHVSAPVNSPKPPSTGGLPTGQNICTECERLI
C6              QHYHQQQQQQQ---SSATRHVSAPVNSPKPPSTGGLPTGQNICTECERLI
C7              QHYHQQQQQQQQQ-SSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLI
C8              QQHHQQQQQQQ--LSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLI
                *::*******.    *:*********************************

C1              TGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAIN
C2              TGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAIN
C3              TGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAIN
C4              TGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAIN
C5              TGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAIN
C6              TGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAIN
C7              TGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHARQAAIN
C8              TGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAIN
                ********************************************:*****

C1              NPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-HSNGYSNGNSTPA
C2              NPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-NSNGYSNGNSTPA
C3              NPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-NSNGYSNGNSTPA
C4              NPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-NSNGYSNGNSTPA
C5              NPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-SSNGYSNGNSAPA
C6              NPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-NSNGYSNGNSAPA
C7              NPPTGTEGYVPVPIKPNTKLSASTISSALNTHGYGG-NSNGYSNGNSAPA
C8              NPPSGTEGYVPVPIKPNTKLSASTISTALNSHGYGGSNSNGYSNGNS--A
                ***:**********************:***:*****  *********  *

C1              PAPVNQGYARPFGAAAPKSPVS-YPPQQQQQ-SPRPAPGGQN------PY
C2              PAPVNQGYARPFGAAAPKSPVS-YPPQQQQQ-SPRPAPGGQN------PY
C3              PAPVNQGYARPFGAAAPKSPVS-YPPQQQQQ-SPRPAPGGQN------PY
C4              PAPVNQGYARPFGAAAPKSPVS-YPPQQQQQ-SPR--PGGQN------PY
C5              PAPVNQGYARPFGAAAPKSPVS-YPPQQQQQQSPRPAPGGQN------PY
C6              PAPVNQGYARPFGAAAPKSPVS-YPVQQQQQ-SPRPAPGGNN------PY
C7              PAPVNQGYARPFGAAAPKSPVS-YPVQQQQQQSPRPAPGGNN------PY
C8              PAPVNQGYARPFGAAAPKSPVASYPPQQQQQ-SPRPAPGGNNNFNNNNAY
                *********************: ** ***** ***  ***:*      .*

C1              ATLPRSNVGQQVPPANTSTAFAPAPAPAP--------------TSIPVRP
C2              ATLPRSNVGQQVPPANTSTAFAPAPAPAP--------------TSIPVRP
C3              ATLPRSNVGQQVPPANTSTAFAPAPAPAPAPAPAP--------TSTPVRP
C4              ATLPRSNVGQQVPPATTSTAFAPAPAPAPSLAPVP--------TSTPVRP
C5              ATLPRSNVGQQVPPATTSTAFAPAPAPAPASVPAP--------TSTPLRP
C6              ATLPRSNVGQQVPPA-TSTACAPAPVQAPAPAPAPAPAPTLAPVSTPVRP
C7              ATLPRSNVGQQVPPA-TSTAFAPAPAPAPAP------------VSTPVRP
C8              ATLPRSNVGQQVPPA-----FAPAPAPAPAP-----------------AP
                ***************      ****. **                    *

C1              SAIAVQSSYCSSQFDVHELIEETAEELEHSEVLFPPPSPLSHLTKQGKAV
C2              SAIAVQSSYCS-QFDAHELIEETAEELEHSEVLFPPPSPLSHLTKQGKAV
C3              SAIAVQSSYCSSQFDAHELIEETAEELEHSEVLFPPPSPLSHLTKQGKAV
C4              SAFAVQSSYCNSQFDAHELIEETVEELEHSPVLFPPPSPLSHLTKHGKAV
C5              SAIAVQSSYCSRQFDAHELIEETAEELEHSEVLFPPPSPLSHLTKQGKAV
C6              PPIAVQSSYCSTQFDAHELIEETAEELEHSDVLFPPPSPLSHLTKQGKAV
C7              PALAVQSSYCSTQYDAHELFEETAEELEHSPILFPPPSPLSHLTKQGKAV
C8              PAIAIAVQSSHQHFDAHELIEETAEELEHSEVLFPPPSPLSHLTKQGKAV
                ..:*:  . .  ::*.***:***.****** :*************:****

C1              QSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPV
C2              QSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPV
C3              QSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPV
C4              QSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPV
C5              QSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPV
C6              QSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPV
C7              QSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPV
C8              QSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPA
                *************************************************.

C1              TSDSST--VHRP--IAQVAAPTTVVAPSRERE---KERRPQLSVPIIVED
C2              TSDSST--VHRP--IAQVAAPTTVVAPSRERE---KERRPQLSVPIIVED
C3              TSDSST--VHRP--IAQVAAPTTVVAPSRERE---KERRPQLSVPIIVED
C4              TSDSST--VHRP--IAQVAAPTTVVAPSRERE---KERRPQLSVPIIVED
C5              TSDTST--VHRP--IAQVAAPTTVVAPSRERE---KERRPQLSVPIIVED
C6              TSDSST--VHKPIAIAQAAPPTTVVAPSRERE--TVKPRPQLSVPIIVED
C7              TSDSST--VHRPIAIAQVAPPTTVVAPSRERERETPKPRPQLSVPIIVED
C8              PSDSSAPAVHRP--IAQVPTP--VVAPSREKER-ERERRPQLSVPIIVED
                .**:*:  **:*  ***...*  *******:*    : ************

C1              RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV
C2              RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV
C3              RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV
C4              RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV
C5              RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV
C6              RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV
C7              RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV
C8              RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV
                **************************************************

C1              FEECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPETK
C2              FEECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPETK
C3              FEECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPETK
C4              FEECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAPRMREPETK
C5              FEECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPETK
C6              FEECAASHARNYNELCASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPEPK
C7              FEECAASHARNYNELCASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPEPK
C8              FEECSATHARNYNELCASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPEPK
                ****:*:******** ****************************:***.*

C1              SNILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSYNQQPERIT
C2              SNILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSYNQQPERIT
C3              SNILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSYNQQPERIT
C4              SNILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSFSQQPERIT
C5              SNILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSFSQQPERIT
C6              STILSVSGAPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSFSQQPERIT
C7              STILSVSGAPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSFSQQPERIT
C8              STILSVSGAPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSFSQQPEKIT
                *.******.********************************:.****:**

C1              EQRVGNLNIQQREQSSQLQQQAQSQTQSQTRSQVGNTQIERRRKVTEEFE
C2              EQRVGNLNIQQREQSSQLQQQALSQTQSQTRSQVGNTQIERRRKVTEEFE
C3              EQRVGNLNIQQREQSSQLQQQAQSQTQSQTRSQVGNTQIERRRKVTEEFE
C4              EQRVGNLNIQQREQSSQLQQQAQSQTQSQTRSQVGNTQIERRRKVTEEFE
C5              EQRLGNLSIQQREQSSQLQQQAQSQTQSQTRSQVGNTQIERRRKVTEEFE
C6              EQRVGNLSIQQREQSSQLQQQAQSQSQSQTRSQVGNTQIERRRKVTEEFE
C7              EQRVGNLSIQQREQSSQLQQQAQSQSQSQTRSQVGNTQIERRRKVTEEFE
C8              EQRVGNLSIQQREQSSQLQQQAQSQSQSQTRSQVGNTQIERRRKVTEEFE
                ***:***.************** **:************************

C1              RTQSAKTIEIRTGSQSVSQSKAQSQSISQAQTQAQSQ--------SQNQS
C2              RTQSAKTIEIRTGSQSVSQSKAQSQSISQAQTQAQSQ--------SQNQS
C3              RTQSAKTIEIRTGSQSVSQSKAQSQSISQAQTQAQSQ--------SQNQS
C4              RTQSAKTIEIRTGSQSVSQSRAQSQSISQAQSQAQYQ--------SQNQS
C5              RTQSAKTIEIRTGSQSVSQSRAQSQSISQAQTQAQSQ--------SQNQS
C6              RTQSAKTIEIRTGSQSVTQSRGQSQAISQNHAQ------------SQNQS
C7              RTQSAKTIEIRTGSQSVTQSRGQSQAISQSQAQSQAQSQVQSQVQSQNQS
C8              RTQSAKTIEIRTGSQSTSQSRGQFQSLSQSRGQSSSVS--QSQAQSQTQS
                ****************.:**:.* *::** : *            **.**

C1              DTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGEGCF
C2              DTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGEGCF
C3              DTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGEGCF
C4              DTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGEGCF
C5              DTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGEGCF
C6              DTERRSSYGKTGFVANQAKRLSCLEQEISSLTSQSQAISARASALGEGCF
C7              DTERRSSYGKTGFVANQAKRLSCLEQEISSLTSQSQAISARASALGEGCF
C8              DTERRSSYGKTGFVANQAKRLSCLEQEISSLTSQSQAISARASALGEGCF
                ***************.*******:*:************************

C1              PNLRSPTFDSKFPLKPAPAESIVPGYATVPAATKMLTAPPPGFLQQQQQQ
C2              PNLRSPTFDSKFPLKPAPAESIVPGYATVPAATKMLTAPPPGFLQQQQQQ
C3              PNLRSPTFDSKFPLKPAPAESIVPGYATVPAATKMLTAPPPGFLQQQQQQ
C4              PNLRSPTFDSKFPLKPAPAESIVPGYTTVPAATKMLTAPPPGFLQQQQQQ
C5              PNLRSPTFDSKFPLKPAPAESIVPGYATVPAATKMLTAPPPGFLQQQQQ-
C6              PNLRSPTFDSKFPLKPASVESTVPGYGAAPAATDKLTAPPPGFLQQQQQ-
C7              PNLRSPTFDSKFPLKPASVESTVPGYGTAPAATDKLMAPPPGFLQQQQQQ
C8              PNLRSPTFDSKFPLKPASAESIVPGYATAPLATEKLMAPPPGFILQQQQQ
                *****************..** **** :.* **. * ******: **** 

C1              Q-QRSAFSGYQAT-TSSVQQSSFASSSKATTSSLSSS----SASASASAS
C2              Q-QRSAFSGYQAT-TSSVQQSSFASSSKATTSSLSSS----SASASASAS
C3              Q-QRSAFSGYQAT-TSSVQQSSFASSSKATTSSLSSS----SASASASAS
C4              Q-QRSAFSGYQAT-TSSVQQSSFASSSKATTSSLSSSSASASASASASAS
C5              --QRSAFSGYQAT-TSSVQQSSFASSSKATTSSLSSSS--ASASASASAS
C6              ---RSAFSGYQAT-TSAVQQSSYASSSKATSSSLSSS----SASASTSAS
C7              QQQRSAFSGYQAT-TSAVQQSSYASSSKATSSSLSSS----SASASASAS
C8              Q--RSAFSGYQATSTSSVQQS-----QKTTSSSLASSS---SASASASAS
                   ********** **:****     .*:*:***:**    *****:***

C1              VARSSQSLTQASAITTTTNNQATTAYRSSNGSITKPNLASRPSIASITAP
C2              VARSSQSLTQASAITTTTNNQATTAYRSSNGSITKPNLASRPSIASITAP
C3              VARSSQSLTQASAITTTTNNQATTAYRSSNGSITKPNLASRPSIASITAP
C4              VARSSQSLTQASAITTTTNNQATTAYRSSNGSITKPNLASRPSIASITAP
C5              VARSSQSLTQASAITTTTNNQATTAYRSSNGSITQPNLASRPSIASITAP
C6              VARSSQSLTQASAITTTTNNQATKAFRSSNGSTINANTASRPSIASITAP
C7              VARSSQSLTQASAITTTTNNQATTAFRSSNGSTIKPNPASRPSIASITAP
C8              ASRSSQSLTQASAITTTTNNQATMAYRSSNASTIKPNLASRPSIASITAP
                .:********************* *:****.*  :.* ************

C1              GSASAPAPV----PSAAPTKATAPFKAPIVPKSVIANAVNAAAP--PAPA
C2              GSANAPA------PSAASTKATAPFKAPIVPKSVIANAVNAAAP--PAPA
C3              GSANAPAPV----PSAAPTKATAPFKAPIVPKSVIANAVNAAAP--PAPA
C4              GSANAPAPAPA--PSAAPIKATAPFKAPIVPKSVIANAVNAAAP--PAPA
C5              GSANAPAPAAAPAPLAAPTRATAPFKAPIVPKSVIANAVNAAAP--PAPA
C6              G--SAPAP--------AAVKATAPLKAPIAPKSVIANAFNAAAPPAPAPA
C7              GSANATAP--------APVKAIAPLKAPIAPKSVIANAFNAAAPPAPAPA
C8              GSAPAPAP--------APSAAPIKAKAPIAPKSVIANAVNAAAP--PAPA
                *   *.*         *.  *    ****.********.*****  ****

C1              VFPPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGP
C2              VFPPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGP
C3              VFPPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGP
C4              VFPPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGP
C5              VFPPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGP
C6              VFPPDLGDLNLNSNVDDSAGPGAGGKSAGAFGATSAPKRGRGILNKAAGP
C7              VFPPDLGDLNLNSNVDDSVGAGAGGKSAGAFGATSAPKRGRGILNKAAGP
C8              VFPPDLSDLNLNSNVDDSA--GAGNKSAGAFGATSAPKRGRGILNKAAGP
                ******.*********:*   ***.*************************

C1              GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE
C2              GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE
C3              GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE
C4              GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE
C5              GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE
C6              GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE
C7              GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE
C8              GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE
                **************************************************

C1              KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKI
C2              KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKV
C3              KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKI
C4              KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKI
C5              KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKI
C6              KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKI
C7              KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKI
C8              KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKI
                *************************************************:

C1              FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS
C2              FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS
C3              FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS
C4              FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS
C5              FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS
C6              FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS
C7              FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS
C8              FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS
                **************************************************

C1              QCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooooooooooooooo
C2              QCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooooooooooooooo
C3              QCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooooooooo------
C4              QCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooooo--------------
C5              QCFNCTFCKQNLEGQSFYNKGGRPFCKNHARoooo---------------
C6              QCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooooooooooo----
C7              QCFNCTFCKQNLEGQSFYNKGGRPFCKNHAR-------------------
C8              QCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooooooooooo----
                *******************************                   

C1              ooo
C2              ooo
C3              ---
C4              ---
C5              ---
C6              ---
C7              ---
C8              ---
                   




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/442/Zasp52-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1340 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1340 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1340 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1340 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zas