--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Fri Dec 09 14:21:21 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/442/Zasp52-PM/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/442/Zasp52-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/442/Zasp52-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/442/Zasp52-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -10733.80 -10746.91 2 -10733.26 -10750.78 -------------------------------------- TOTAL -10733.49 -10750.11 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/442/Zasp52-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/442/Zasp52-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/442/Zasp52-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.488619 0.000775 0.431945 0.541041 0.488171 1291.60 1317.80 1.001 r(A<->C){all} 0.069039 0.000090 0.050101 0.086789 0.068911 1143.99 1196.69 1.000 r(A<->G){all} 0.232536 0.000348 0.200098 0.273092 0.231501 993.29 1008.72 1.001 r(A<->T){all} 0.171144 0.000363 0.133126 0.207815 0.169904 628.90 837.75 1.000 r(C<->G){all} 0.056965 0.000057 0.042350 0.071811 0.056576 1139.55 1162.96 1.000 r(C<->T){all} 0.395643 0.000547 0.350439 0.442532 0.395458 832.30 840.05 1.000 r(G<->T){all} 0.074674 0.000144 0.051806 0.098234 0.074303 1028.35 1034.89 1.000 pi(A){all} 0.233137 0.000040 0.219915 0.244558 0.233104 982.72 1101.39 1.000 pi(C){all} 0.341011 0.000048 0.328134 0.354577 0.341039 986.37 1061.60 1.000 pi(G){all} 0.256865 0.000042 0.244485 0.269933 0.257020 1077.79 1079.01 1.000 pi(T){all} 0.168987 0.000028 0.159219 0.179779 0.168990 855.56 993.10 1.000 alpha{1,2} 0.148886 0.000281 0.117859 0.182864 0.148416 1296.62 1320.57 1.001 alpha{3} 4.217230 1.113781 2.266119 6.261852 4.096735 1421.67 1448.88 1.000 pinvar{all} 0.439584 0.001062 0.382881 0.507157 0.440902 1236.31 1250.91 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -9420.353737 Model 2: PositiveSelection -9418.794198 Model 0: one-ratio -9513.880162 Model 3: discrete -9418.049544 Model 7: beta -9421.752682 Model 8: beta&w>1 -9418.179504 Model 0 vs 1 187.05285000000003 Model 2 vs 1 3.1190779999997176 Model 8 vs 7 7.146356000001106 Additional information for M7 vs M8: Naive Empirical Bayes (NEB) analysis Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_Zasp52-PM) Pr(w>1) post mean +- SE for w 231 L 0.740 1.879 479 E 0.871 2.122 575 K 0.887 2.151 819 A 0.632 1.682 1015 S 0.989* 2.338 1021 T 0.806 2.001 1022 K 0.564 1.555 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_Zasp52-PM) Pr(w>1) post mean +- SE for w 231 L 0.914 1.426 +- 0.261 251 Q 0.602 1.063 +- 0.564 340 T 0.747 1.254 +- 0.441 408 P 0.603 1.065 +- 0.563 455 Q 0.778 1.273 +- 0.447 456 S 0.730 1.214 +- 0.493 457 S 0.655 1.149 +- 0.507 460 S 0.674 1.177 +- 0.484 479 E 0.950* 1.461 +- 0.190 564 A 0.608 1.071 +- 0.561 575 K 0.957* 1.466 +- 0.177 655 N 0.538 0.986 +- 0.583 809 S 0.646 1.117 +- 0.543 819 A 0.900 1.414 +- 0.275 820 Q 0.642 1.117 +- 0.538 821 T 0.826 1.336 +- 0.375 904 A 0.733 1.218 +- 0.491 908 A 0.522 0.966 +- 0.587 944 S 0.526 0.971 +- 0.586 1001 L 0.586 1.044 +- 0.568 1015 S 0.986* 1.491 +- 0.105 1020 P 0.710 1.191 +- 0.507 1021 T 0.934 1.445 +- 0.224 1022 K 0.864 1.375 +- 0.333 1024 T 0.683 1.159 +- 0.524 1025 A 0.656 1.129 +- 0.539 1026 P 0.650 1.120 +- 0.543 1027 F 0.820 1.331 +- 0.380 1069 P 0.728 1.212 +- 0.495 1073 G 0.748 1.236 +- 0.477
>C1 MAQPQLLQIKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS EVLKFLREEETGQSTPAFGNSHYEHDAPQQLQQPQQQYNQHQQHYHQQQQ QQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFVRIKDKN LHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTGTEGYVP VPIKPNTKLSASTISSALNSHGYGGHSNGYSNGNSTPAPAPVNQGYARPF GAAAPKSPVSYPPQQQQQSPRPAPGGQNPYATLPRSNVGQQVPPANTSTA FAPAPAPAPTSIPVRPSAIAVQSSYCSSQFDVHELIEETAEELEHSEVLF PPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQEL RENVPLAFVDAPKAPVTSDSSTVHRPIAQVAAPTTVVAPSREREKERRPQ LSVPIIVEDRSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVP FYQTEEKLVFEECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRA PRMKEPETKSNILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQS YNQQPERITEQRVGNLNIQQREQSSQLQQQAQSQTQSQTRSQVGNTQIER RRKVTEEFERTQSAKTIEIRTGSQSVSQSKAQSQSISQAQTQAQSQSQNQ SDTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGEGC FPNLRSPTFDSKFPLKPAPAESIVPGYATVPAATKMLTAPPPGFLQQQQQ QQQRSAFSGYQATTSSVQQSSFASSSKATTSSLSSSSASASASASVARSS QSLTQASAITTTTNNQATTAYRSSNGSITKPNLASRPSIASITAPGSASA PAPVPSAAPTKATAPFKAPIVPKSVIANAVNAAAPPAPAVFPPDLSDLNL NSNVDNSPGAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQ IRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKY LAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNA YCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLE GQSFYNKGGRPFCKNHARoooooooooooooooooooooo >C2 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS EVLKFLRVEETGQSTPAFGNSHYEHDAPQQVQQQQQPQQQYNQHQQHYHQ QQQQQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFVRIK DKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTGTEG YVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSTPAPAPVNQGYA RPFGAAAPKSPVSYPPQQQQQSPRPAPGGQNPYATLPRSNVGQQVPPANT STAFAPAPAPAPTSIPVRPSAIAVQSSYCSQFDAHELIEETAEELEHSEV LFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQ ELRENVPLAFVDAPKAPVTSDSSTVHRPIAQVAAPTTVVAPSREREKERR PQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPI VPFYQTEEKLVFEECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAI RAPRMKEPETKSNILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSAS QSYNQQPERITEQRVGNLNIQQREQSSQLQQQALSQTQSQTRSQVGNTQI ERRRKVTEEFERTQSAKTIEIRTGSQSVSQSKAQSQSISQAQTQAQSQSQ NQSDTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGE GCFPNLRSPTFDSKFPLKPAPAESIVPGYATVPAATKMLTAPPPGFLQQQ QQQQQRSAFSGYQATTSSVQQSSFASSSKATTSSLSSSSASASASASVAR SSQSLTQASAITTTTNNQATTAYRSSNGSITKPNLASRPSIASITAPGSA NAPAPSAASTKATAPFKAPIVPKSVIANAVNAAAPPAPAVFPPDLSDLNL NSNVDNSPGAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQ IRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKY LAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKVFGNRPFFLEDGNA YCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLE GQSFYNKGGRPFCKNHARoooooooooooooooooooooo >C3 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS EVLKFLREEETGQSTPAFGNSHYEHDAPQQLQQQQQPQQQYNQHQQHYHQ QQQQQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFVRIK DKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTGTEG YVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSTPAPAPVNQGYA RPFGAAAPKSPVSYPPQQQQQSPRPAPGGQNPYATLPRSNVGQQVPPANT STAFAPAPAPAPAPAPAPTSTPVRPSAIAVQSSYCSSQFDAHELIEETAE ELEHSEVLFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLPTQSP IRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHRPIAQVAAPTTVVAPSR EREKERRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALTPTRPYTPSL TNKPAPIVPFYQTEEKLVFEECSATHARNYNELNASPFPDRTRSPAPGPP PNPLNAIRAPRMKEPETKSNILSVSGGPRLQTGSITTGQSYQGQLLAHSE QSSQSASQSYNQQPERITEQRVGNLNIQQREQSSQLQQQAQSQTQSQTRS QVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVSQSKAQSQSISQAQT QAQSQSQNQSDTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISA RASALGEGCFPNLRSPTFDSKFPLKPAPAESIVPGYATVPAATKMLTAPP PGFLQQQQQQQQRSAFSGYQATTSSVQQSSFASSSKATTSSLSSSSASAS ASASVARSSQSLTQASAITTTTNNQATTAYRSSNGSITKPNLASRPSIAS ITAPGSANAPAPVPSAAPTKATAPFKAPIVPKSVIANAVNAAAPPAPAVF PPDLSDLNLNSNVDNSPGAGGKSAGAFGATSAPKRGRGILNKAAGPGVRI PLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDL YCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNR PFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFN CTFCKQNLEGQSFYNKGGRPFCKNHARooooooooooooo >C4 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS EVLKFLREEETGQSTPAFGNSHYEHDAPQQQQQQYQQPQQQYNQHQQHYH QQQQQQQQQQSSATRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVF VRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPT GTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSTPAPAPVN QGYARPFGAAAPKSPVSYPPQQQQQSPRPGGQNPYATLPRSNVGQQVPPA TTSTAFAPAPAPAPSLAPVPTSTPVRPSAFAVQSSYCNSQFDAHELIEET VEELEHSPVLFPPPSPLSHLTKHGKAVQSGLHKADSIPKYQRNWTVLPTQ SPIRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHRPIAQVAAPTTVVAP SREREKERRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALTPTRPYTP SLTNKPAPIVPFYQTEEKLVFEECSATHARNYNELNASPFPDRTRSPAPG PPPNPLNAIRAPRMREPETKSNILSVSGGPRLQTGSITTGQSYQGQLLAH SEQSSQSASQSFSQQPERITEQRVGNLNIQQREQSSQLQQQAQSQTQSQT RSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVSQSRAQSQSISQA QSQAQYQSQNQSDTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAI SARASALGEGCFPNLRSPTFDSKFPLKPAPAESIVPGYTTVPAATKMLTA PPPGFLQQQQQQQQRSAFSGYQATTSSVQQSSFASSSKATTSSLSSSSAS ASASASASASVARSSQSLTQASAITTTTNNQATTAYRSSNGSITKPNLAS RPSIASITAPGSANAPAPAPAPSAAPIKATAPFKAPIVPKSVIANAVNAA APPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGAFGATSAPKRGRGILNK AAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIG FVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQ CGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNH NYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooooo >C5 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS EVLKFLREEETGQSTPAFGNSHYEHDAPQQLQQQQQQQQPQQQYNQHQHQ QHYHQQQQQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVF VRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPS GTEGYVPVPIKPNTKLSASTISSALNSHGYGGSSNGYSNGNSAPAPAPVN QGYARPFGAAAPKSPVSYPPQQQQQQSPRPAPGGQNPYATLPRSNVGQQV PPATTSTAFAPAPAPAPASVPAPTSTPLRPSAIAVQSSYCSRQFDAHELI EETAEELEHSEVLFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVL PTQSPIRTPEPQELRENVPLAFVDAPKAPVTSDTSTVHRPIAQVAAPTTV VAPSREREKERRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALTPTRP YTPSLTNKPAPIVPFYQTEEKLVFEECSATHARNYNELNASPFPDRTRSP APGPPPNPLNAIRAPRMKEPETKSNILSVSGGPRLQTGSITTGQSYQGQL LAHSEQSSQSASQSFSQQPERITEQRLGNLSIQQREQSSQLQQQAQSQTQ SQTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVSQSRAQSQSI SQAQTQAQSQSQNQSDTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQS QAISARASALGEGCFPNLRSPTFDSKFPLKPAPAESIVPGYATVPAATKM LTAPPPGFLQQQQQQRSAFSGYQATTSSVQQSSFASSSKATTSSLSSSSA SASASASASVARSSQSLTQASAITTTTNNQATTAYRSSNGSITQPNLASR PSIASITAPGSANAPAPAAAPAPLAAPTRATAPFKAPIVPKSVIANAVNA AAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGAFGATSAPKRGRGILN KAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDI GFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCG QCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALN HNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARoooo >C6 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS EVLKFLREEESGQSTPAFGNSHYEHDAPRQQQQPQQQYNQQQQHYHQQQQ QQQSSATRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFVRIKDKN LHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPSGTEGYVP VPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSAPAPAPVNQGYARPF GAAAPKSPVSYPVQQQQQSPRPAPGGNNPYATLPRSNVGQQVPPATSTAC APAPVQAPAPAPAPAPAPTLAPVSTPVRPPPIAVQSSYCSTQFDAHELIE ETAEELEHSDVLFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLP TQSPIRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHKPIAIAQAAPPTT VVAPSRERETVKPRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALTPT RPYTPSLTNKPAPIVPFYQTEEKLVFEECAASHARNYNELCASPFPDRTR SPAPGPPPNPLNAIRAPRMKEPEPKSTILSVSGAPRLQTGSITTGQSYQG QLLAHSEQSSQSASQSFSQQPERITEQRVGNLSIQQREQSSQLQQQAQSQ SQSQTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVTQSRGQSQ AISQNHAQSQNQSDTERRSSYGKTGFVANQAKRLSCLEQEISSLTSQSQA ISARASALGEGCFPNLRSPTFDSKFPLKPASVESTVPGYGAAPAATDKLT APPPGFLQQQQQRSAFSGYQATTSAVQQSSYASSSKATSSSLSSSSASAS TSASVARSSQSLTQASAITTTTNNQATKAFRSSNGSTINANTASRPSIAS ITAPGSAPAPAAVKATAPLKAPIAPKSVIANAFNAAAPPAPAPAVFPPDL GDLNLNSNVDDSAGPGAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPL CNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYC EYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPF FLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCT FCKQNLEGQSFYNKGGRPFCKNHARooooooooooooooo >C7 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS EVLKFLREEETGQSTPAFGNSHCEHDAPRQQQQQQPQQQQQYNQQQQHYH QQQQQQQQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFV RIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHARQAAINNPPTG TEGYVPVPIKPNTKLSASTISSALNTHGYGGNSNGYSNGNSAPAPAPVNQ GYARPFGAAAPKSPVSYPVQQQQQQSPRPAPGGNNPYATLPRSNVGQQVP PATSTAFAPAPAPAPAPVSTPVRPPALAVQSSYCSTQYDAHELFEETAEE LEHSPILFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLPTQSPI RTPEPQELRENVPLAFVDAPKAPVTSDSSTVHRPIAIAQVAPPTTVVAPS RERERETPKPRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALTPTRPY TPSLTNKPAPIVPFYQTEEKLVFEECAASHARNYNELCASPFPDRTRSPA PGPPPNPLNAIRAPRMKEPEPKSTILSVSGAPRLQTGSITTGQSYQGQLL AHSEQSSQSASQSFSQQPERITEQRVGNLSIQQREQSSQLQQQAQSQSQS QTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVTQSRGQSQAIS QSQAQSQAQSQVQSQVQSQNQSDTERRSSYGKTGFVANQAKRLSCLEQEI SSLTSQSQAISARASALGEGCFPNLRSPTFDSKFPLKPASVESTVPGYGT APAATDKLMAPPPGFLQQQQQQQQQRSAFSGYQATTSAVQQSSYASSSKA TSSSLSSSSASASASASVARSSQSLTQASAITTTTNNQATTAFRSSNGST IKPNPASRPSIASITAPGSANATAPAPVKAIAPLKAPIAPKSVIANAFNA AAPPAPAPAVFPPDLGDLNLNSNVDDSVGAGAGGKSAGAFGATSAPKRGR GILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRP LQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPEC FTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWV EALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHAR >C8 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS EVLKFLREEETGQSTPAFGNSHYEHDAPQQQQQPQQQQYNQQQHQQQHYH QQHHQQQQQQQLSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITG VFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNP PSGTEGYVPVPIKPNTKLSASTISTALNSHGYGGSNSNGYSNGNSAPAPV NQGYARPFGAAAPKSPVASYPPQQQQQSPRPAPGGNNNFNNNNAYATLPR SNVGQQVPPAFAPAPAPAPAPAPPAIAIAVQSSHQHFDAHELIEETAEEL EHSEVLFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLPTQSPIR TPEPQELRENVPLAFVDAPKAPAPSDSSAPAVHRPIAQVPTPVVAPSREK ERERERRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALTPTRPYTPSL TNKPAPIVPFYQTEEKLVFEECSATHARNYNELCASPFPDRTRSPAPGPP PNPLNAIRAPRMKEPEPKSTILSVSGAPRLQTGSITTGQSYQGQLLAHSE QSSQSASQSFSQQPEKITEQRVGNLSIQQREQSSQLQQQAQSQSQSQTRS QVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSTSQSRGQFQSLSQSRG QSSSVSQSQAQSQTQSDTERRSSYGKTGFVANQAKRLSCLEQEISSLTSQ SQAISARASALGEGCFPNLRSPTFDSKFPLKPASAESIVPGYATAPLATE KLMAPPPGFILQQQQQQRSAFSGYQATSTSSVQQSQKTTSSSLASSSSAS ASASASASRSSQSLTQASAITTTTNNQATMAYRSSNASTIKPNLASRPSI ASITAPGSAPAPAPAPSAAPIKAKAPIAPKSVIANAVNAAAPPAPAVFPP DLSDLNLNSNVDDSAGAGNKSAGAFGATSAPKRGRGILNKAAGPGVRIPL CNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYC EYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPF FLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCT FCKQNLEGQSFYNKGGRPFCKNHARooooooooooooooo CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=8, Len=1403 C1 MAQPQLLQIKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ C2 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ C3 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ C4 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ C5 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ C6 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ C7 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ C8 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ ********:***************************************** C1 PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT C2 PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT C3 PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT C4 PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT C5 PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT C6 PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT C7 PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT C8 PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT ************************************************** C1 GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS C2 GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS C3 GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS C4 GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS C5 GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS C6 GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS C7 GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS C8 GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS ****************************************:********* C1 IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS C2 IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS C3 IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS C4 IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS C5 IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS C6 IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS C7 IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS C8 IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS **************:*********************************** C1 EVLKFLREEETGQSTPAFGNSHYEHDAP---QQLQQ---PQQQYN--QHQ C2 EVLKFLRVEETGQSTPAFGNSHYEHDAP---QQVQQQQQPQQQYN--QHQ C3 EVLKFLREEETGQSTPAFGNSHYEHDAP---QQLQQQQQPQQQYN--QHQ C4 EVLKFLREEETGQSTPAFGNSHYEHDAPQ--QQQQQYQQPQQQYN--QHQ C5 EVLKFLREEETGQSTPAFGNSHYEHDAPQQLQQQQQQQQPQQQYNQHQHQ C6 EVLKFLREEESGQSTPAFGNSHYEHDAPR--QQQQPQ----QQYN--QQQ C7 EVLKFLREEETGQSTPAFGNSHCEHDAPR--QQQQQQPQQQQQYN--QQQ C8 EVLKFLREEETGQSTPAFGNSHYEHDAPQQQQQPQQQQYNQQQHQQQHYH ******* **:*********** ***** ** * **:: : : C1 QHYHQQQQQQQ---SSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLI C2 QHYHQQQQQQQ---SSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLI C3 QHYHQQQQQQQ---SSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLI C4 QHYHQQQQQQQQQQSSATRHVSAPVNSPKPPSTGGLPTGQNICTECERLI C5 QHYHQQQQQQS----STTRHVSAPVNSPKPPSTGGLPTGQNICTECERLI C6 QHYHQQQQQQQ---SSATRHVSAPVNSPKPPSTGGLPTGQNICTECERLI C7 QHYHQQQQQQQQQ-SSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLI C8 QQHHQQQQQQQ--LSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLI *::*******. *:********************************* C1 TGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAIN C2 TGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAIN C3 TGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAIN C4 TGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAIN C5 TGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAIN C6 TGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAIN C7 TGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHARQAAIN C8 TGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAIN ********************************************:***** C1 NPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-HSNGYSNGNSTPA C2 NPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-NSNGYSNGNSTPA C3 NPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-NSNGYSNGNSTPA C4 NPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-NSNGYSNGNSTPA C5 NPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-SSNGYSNGNSAPA C6 NPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-NSNGYSNGNSAPA C7 NPPTGTEGYVPVPIKPNTKLSASTISSALNTHGYGG-NSNGYSNGNSAPA C8 NPPSGTEGYVPVPIKPNTKLSASTISTALNSHGYGGSNSNGYSNGNS--A ***:**********************:***:***** ********* * C1 PAPVNQGYARPFGAAAPKSPVS-YPPQQQQQ-SPRPAPGGQN------PY C2 PAPVNQGYARPFGAAAPKSPVS-YPPQQQQQ-SPRPAPGGQN------PY C3 PAPVNQGYARPFGAAAPKSPVS-YPPQQQQQ-SPRPAPGGQN------PY C4 PAPVNQGYARPFGAAAPKSPVS-YPPQQQQQ-SPR--PGGQN------PY C5 PAPVNQGYARPFGAAAPKSPVS-YPPQQQQQQSPRPAPGGQN------PY C6 PAPVNQGYARPFGAAAPKSPVS-YPVQQQQQ-SPRPAPGGNN------PY C7 PAPVNQGYARPFGAAAPKSPVS-YPVQQQQQQSPRPAPGGNN------PY C8 PAPVNQGYARPFGAAAPKSPVASYPPQQQQQ-SPRPAPGGNNNFNNNNAY *********************: ** ***** *** ***:* .* C1 ATLPRSNVGQQVPPANTSTAFAPAPAPAP--------------TSIPVRP C2 ATLPRSNVGQQVPPANTSTAFAPAPAPAP--------------TSIPVRP C3 ATLPRSNVGQQVPPANTSTAFAPAPAPAPAPAPAP--------TSTPVRP C4 ATLPRSNVGQQVPPATTSTAFAPAPAPAPSLAPVP--------TSTPVRP C5 ATLPRSNVGQQVPPATTSTAFAPAPAPAPASVPAP--------TSTPLRP C6 ATLPRSNVGQQVPPA-TSTACAPAPVQAPAPAPAPAPAPTLAPVSTPVRP C7 ATLPRSNVGQQVPPA-TSTAFAPAPAPAPAP------------VSTPVRP C8 ATLPRSNVGQQVPPA-----FAPAPAPAPAP-----------------AP *************** ****. ** * C1 SAIAVQSSYCSSQFDVHELIEETAEELEHSEVLFPPPSPLSHLTKQGKAV C2 SAIAVQSSYCS-QFDAHELIEETAEELEHSEVLFPPPSPLSHLTKQGKAV C3 SAIAVQSSYCSSQFDAHELIEETAEELEHSEVLFPPPSPLSHLTKQGKAV C4 SAFAVQSSYCNSQFDAHELIEETVEELEHSPVLFPPPSPLSHLTKHGKAV C5 SAIAVQSSYCSRQFDAHELIEETAEELEHSEVLFPPPSPLSHLTKQGKAV C6 PPIAVQSSYCSTQFDAHELIEETAEELEHSDVLFPPPSPLSHLTKQGKAV C7 PALAVQSSYCSTQYDAHELFEETAEELEHSPILFPPPSPLSHLTKQGKAV C8 PAIAIAVQSSHQHFDAHELIEETAEELEHSEVLFPPPSPLSHLTKQGKAV ..:*: . . ::*.***:***.****** :*************:**** C1 QSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPV C2 QSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPV C3 QSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPV C4 QSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPV C5 QSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPV C6 QSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPV C7 QSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPV C8 QSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPA *************************************************. C1 TSDSST--VHRP--IAQVAAPTTVVAPSRERE---KERRPQLSVPIIVED C2 TSDSST--VHRP--IAQVAAPTTVVAPSRERE---KERRPQLSVPIIVED C3 TSDSST--VHRP--IAQVAAPTTVVAPSRERE---KERRPQLSVPIIVED C4 TSDSST--VHRP--IAQVAAPTTVVAPSRERE---KERRPQLSVPIIVED C5 TSDTST--VHRP--IAQVAAPTTVVAPSRERE---KERRPQLSVPIIVED C6 TSDSST--VHKPIAIAQAAPPTTVVAPSRERE--TVKPRPQLSVPIIVED C7 TSDSST--VHRPIAIAQVAPPTTVVAPSRERERETPKPRPQLSVPIIVED C8 PSDSSAPAVHRP--IAQVPTP--VVAPSREKER-ERERRPQLSVPIIVED .**:*: **:* ***...* *******:* : ************ C1 RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV C2 RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV C3 RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV C4 RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV C5 RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV C6 RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV C7 RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV C8 RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV ************************************************** C1 FEECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPETK C2 FEECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPETK C3 FEECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPETK C4 FEECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAPRMREPETK C5 FEECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPETK C6 FEECAASHARNYNELCASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPEPK C7 FEECAASHARNYNELCASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPEPK C8 FEECSATHARNYNELCASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPEPK ****:*:******** ****************************:***.* C1 SNILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSYNQQPERIT C2 SNILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSYNQQPERIT C3 SNILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSYNQQPERIT C4 SNILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSFSQQPERIT C5 SNILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSFSQQPERIT C6 STILSVSGAPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSFSQQPERIT C7 STILSVSGAPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSFSQQPERIT C8 STILSVSGAPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSFSQQPEKIT *.******.********************************:.****:** C1 EQRVGNLNIQQREQSSQLQQQAQSQTQSQTRSQVGNTQIERRRKVTEEFE C2 EQRVGNLNIQQREQSSQLQQQALSQTQSQTRSQVGNTQIERRRKVTEEFE C3 EQRVGNLNIQQREQSSQLQQQAQSQTQSQTRSQVGNTQIERRRKVTEEFE C4 EQRVGNLNIQQREQSSQLQQQAQSQTQSQTRSQVGNTQIERRRKVTEEFE C5 EQRLGNLSIQQREQSSQLQQQAQSQTQSQTRSQVGNTQIERRRKVTEEFE C6 EQRVGNLSIQQREQSSQLQQQAQSQSQSQTRSQVGNTQIERRRKVTEEFE C7 EQRVGNLSIQQREQSSQLQQQAQSQSQSQTRSQVGNTQIERRRKVTEEFE C8 EQRVGNLSIQQREQSSQLQQQAQSQSQSQTRSQVGNTQIERRRKVTEEFE ***:***.************** **:************************ C1 RTQSAKTIEIRTGSQSVSQSKAQSQSISQAQTQAQSQ--------SQNQS C2 RTQSAKTIEIRTGSQSVSQSKAQSQSISQAQTQAQSQ--------SQNQS C3 RTQSAKTIEIRTGSQSVSQSKAQSQSISQAQTQAQSQ--------SQNQS C4 RTQSAKTIEIRTGSQSVSQSRAQSQSISQAQSQAQYQ--------SQNQS C5 RTQSAKTIEIRTGSQSVSQSRAQSQSISQAQTQAQSQ--------SQNQS C6 RTQSAKTIEIRTGSQSVTQSRGQSQAISQNHAQ------------SQNQS C7 RTQSAKTIEIRTGSQSVTQSRGQSQAISQSQAQSQAQSQVQSQVQSQNQS C8 RTQSAKTIEIRTGSQSTSQSRGQFQSLSQSRGQSSSVS--QSQAQSQTQS ****************.:**:.* *::** : * **.** C1 DTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGEGCF C2 DTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGEGCF C3 DTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGEGCF C4 DTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGEGCF C5 DTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGEGCF C6 DTERRSSYGKTGFVANQAKRLSCLEQEISSLTSQSQAISARASALGEGCF C7 DTERRSSYGKTGFVANQAKRLSCLEQEISSLTSQSQAISARASALGEGCF C8 DTERRSSYGKTGFVANQAKRLSCLEQEISSLTSQSQAISARASALGEGCF ***************.*******:*:************************ C1 PNLRSPTFDSKFPLKPAPAESIVPGYATVPAATKMLTAPPPGFLQQQQQQ C2 PNLRSPTFDSKFPLKPAPAESIVPGYATVPAATKMLTAPPPGFLQQQQQQ C3 PNLRSPTFDSKFPLKPAPAESIVPGYATVPAATKMLTAPPPGFLQQQQQQ C4 PNLRSPTFDSKFPLKPAPAESIVPGYTTVPAATKMLTAPPPGFLQQQQQQ C5 PNLRSPTFDSKFPLKPAPAESIVPGYATVPAATKMLTAPPPGFLQQQQQ- C6 PNLRSPTFDSKFPLKPASVESTVPGYGAAPAATDKLTAPPPGFLQQQQQ- C7 PNLRSPTFDSKFPLKPASVESTVPGYGTAPAATDKLMAPPPGFLQQQQQQ C8 PNLRSPTFDSKFPLKPASAESIVPGYATAPLATEKLMAPPPGFILQQQQQ *****************..** **** :.* **. * ******: **** C1 Q-QRSAFSGYQAT-TSSVQQSSFASSSKATTSSLSSS----SASASASAS C2 Q-QRSAFSGYQAT-TSSVQQSSFASSSKATTSSLSSS----SASASASAS C3 Q-QRSAFSGYQAT-TSSVQQSSFASSSKATTSSLSSS----SASASASAS C4 Q-QRSAFSGYQAT-TSSVQQSSFASSSKATTSSLSSSSASASASASASAS C5 --QRSAFSGYQAT-TSSVQQSSFASSSKATTSSLSSSS--ASASASASAS C6 ---RSAFSGYQAT-TSAVQQSSYASSSKATSSSLSSS----SASASTSAS C7 QQQRSAFSGYQAT-TSAVQQSSYASSSKATSSSLSSS----SASASASAS C8 Q--RSAFSGYQATSTSSVQQS-----QKTTSSSLASSS---SASASASAS ********** **:**** .*:*:***:** *****:*** C1 VARSSQSLTQASAITTTTNNQATTAYRSSNGSITKPNLASRPSIASITAP C2 VARSSQSLTQASAITTTTNNQATTAYRSSNGSITKPNLASRPSIASITAP C3 VARSSQSLTQASAITTTTNNQATTAYRSSNGSITKPNLASRPSIASITAP C4 VARSSQSLTQASAITTTTNNQATTAYRSSNGSITKPNLASRPSIASITAP C5 VARSSQSLTQASAITTTTNNQATTAYRSSNGSITQPNLASRPSIASITAP C6 VARSSQSLTQASAITTTTNNQATKAFRSSNGSTINANTASRPSIASITAP C7 VARSSQSLTQASAITTTTNNQATTAFRSSNGSTIKPNPASRPSIASITAP C8 ASRSSQSLTQASAITTTTNNQATMAYRSSNASTIKPNLASRPSIASITAP .:********************* *:****.* :.* ************ C1 GSASAPAPV----PSAAPTKATAPFKAPIVPKSVIANAVNAAAP--PAPA C2 GSANAPA------PSAASTKATAPFKAPIVPKSVIANAVNAAAP--PAPA C3 GSANAPAPV----PSAAPTKATAPFKAPIVPKSVIANAVNAAAP--PAPA C4 GSANAPAPAPA--PSAAPIKATAPFKAPIVPKSVIANAVNAAAP--PAPA C5 GSANAPAPAAAPAPLAAPTRATAPFKAPIVPKSVIANAVNAAAP--PAPA C6 G--SAPAP--------AAVKATAPLKAPIAPKSVIANAFNAAAPPAPAPA C7 GSANATAP--------APVKAIAPLKAPIAPKSVIANAFNAAAPPAPAPA C8 GSAPAPAP--------APSAAPIKAKAPIAPKSVIANAVNAAAP--PAPA * *.* *. * ****.********.***** **** C1 VFPPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGP C2 VFPPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGP C3 VFPPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGP C4 VFPPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGP C5 VFPPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGP C6 VFPPDLGDLNLNSNVDDSAGPGAGGKSAGAFGATSAPKRGRGILNKAAGP C7 VFPPDLGDLNLNSNVDDSVGAGAGGKSAGAFGATSAPKRGRGILNKAAGP C8 VFPPDLSDLNLNSNVDDSA--GAGNKSAGAFGATSAPKRGRGILNKAAGP ******.*********:* ***.************************* C1 GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE C2 GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE C3 GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE C4 GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE C5 GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE C6 GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE C7 GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE C8 GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE ************************************************** C1 KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKI C2 KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKV C3 KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKI C4 KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKI C5 KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKI C6 KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKI C7 KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKI C8 KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKI *************************************************: C1 FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS C2 FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS C3 FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS C4 FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS C5 FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS C6 FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS C7 FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS C8 FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS ************************************************** C1 QCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooooooooooooooo C2 QCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooooooooooooooo C3 QCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooooooooo------ C4 QCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooooo-------------- C5 QCFNCTFCKQNLEGQSFYNKGGRPFCKNHARoooo--------------- C6 QCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooooooooooo---- C7 QCFNCTFCKQNLEGQSFYNKGGRPFCKNHAR------------------- C8 QCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooooooooooo---- ******************************* C1 ooo C2 ooo C3 --- C4 --- C5 --- C6 --- C7 --- C8 --- PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/442/Zasp52-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1340 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1340 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1340 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1340 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zas