--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1653.94 -1676.30
2 -1652.62 -1682.94
--------------------------------------
TOTAL -1653.08 -1682.24
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.080077 0.000151 0.057120 0.104135 0.079325 1397.17 1449.09 1.000
r(A<->C){all} 0.078155 0.001420 0.014506 0.152099 0.072862 517.11 611.41 1.000
r(A<->G){all} 0.151943 0.001971 0.070411 0.238477 0.147858 684.65 700.80 1.000
r(A<->T){all} 0.055661 0.000522 0.013964 0.099697 0.052841 754.43 788.50 1.000
r(C<->G){all} 0.130538 0.002488 0.043501 0.229678 0.125639 590.01 626.82 1.001
r(C<->T){all} 0.483264 0.004115 0.364641 0.609576 0.483341 582.08 643.32 1.000
r(G<->T){all} 0.100439 0.001174 0.040314 0.169890 0.096759 794.96 828.03 1.000
pi(A){all} 0.271920 0.000207 0.240946 0.297693 0.271871 926.02 1147.60 1.000
pi(C){all} 0.158671 0.000142 0.136496 0.182858 0.158315 1023.34 1186.96 1.000
pi(G){all} 0.226441 0.000190 0.200935 0.253823 0.226382 897.20 1070.35 1.000
pi(T){all} 0.342968 0.000237 0.311860 0.370827 0.342813 959.85 1084.94 1.000
alpha{1,2} 0.541687 0.542870 0.000216 2.028585 0.263105 1065.04 1157.11 1.000
alpha{3} 1.768216 1.325128 0.200898 4.057239 1.503356 1436.92 1468.96 1.000
pinvar{all} 0.279626 0.028838 0.000056 0.565169 0.274081 605.50 707.70 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -948.458426
Model 2: PositiveSelection -947.791991
Model 7: beta -948.761275
Model 8: beta&w>1 -947.792311
Model 2 vs 1 1.332870
Model 8 vs 7 1.937928
-- Starting log on Thu Nov 17 16:37:11 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/LZW_nsp13_VIPR_ALG4_672096717_19732_20634_1_2012_02_China_Unknown_PEDV.result--
-- Starting log on Thu Nov 17 16:45:00 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/LZW_nsp13_VIPR_ALG4_672096717_19732_20634_1_2012_02_China_Unknown_PEDV.result--
-- Starting log on Fri Nov 18 00:58:35 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/LZW_nsp13_VIPR_ALG4_672096717_19732_20634_1_2012_02_China_Unknown_PEDV.result/gapped_alignment/codeml,LZW_nsp13_VIPR_ALG4_672096717_19732_20634_1_2012_02_China_Unknown_PEDV.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 30 taxa and 903 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C321
Taxon 2 -> C66
Taxon 3 -> C355
Taxon 4 -> C263
Taxon 5 -> C327
Taxon 6 -> C72
Taxon 7 -> C548
Taxon 8 -> C232
Taxon 9 -> C78
Taxon 10 -> C311
Taxon 11 -> C218
Taxon 12 -> C149
Taxon 13 -> C316
Taxon 14 -> C551
Taxon 15 -> C563
Taxon 16 -> C370
Taxon 17 -> C223
Taxon 18 -> C112
Taxon 19 -> C24
Taxon 20 -> C185
Taxon 21 -> C431
Taxon 22 -> C587
Taxon 23 -> C461
Taxon 24 -> C599
Taxon 25 -> C388
Taxon 26 -> C130
Taxon 27 -> C473
Taxon 28 -> C239
Taxon 29 -> C136
Taxon 30 -> C29
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1668733117
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 2024575926
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 1252740066
Seed = 1719586496
Swapseed = 1668733117
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 17 unique site patterns
Division 2 has 15 unique site patterns
Division 3 has 37 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -2701.222200 -- 82.122948
Chain 2 -- -2628.009832 -- 82.122948
Chain 3 -- -2670.314716 -- 82.122948
Chain 4 -- -2637.214334 -- 82.122948
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -2623.276667 -- 82.122948
Chain 2 -- -2639.067049 -- 82.122948
Chain 3 -- -2660.175939 -- 82.122948
Chain 4 -- -2646.214473 -- 82.122948
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-2701.222] (-2628.010) (-2670.315) (-2637.214) * [-2623.277] (-2639.067) (-2660.176) (-2646.214)
1000 -- [-1730.648] (-1769.705) (-1739.207) (-1760.169) * (-1752.036) (-1760.291) (-1800.796) [-1750.631] -- 0:16:39
2000 -- (-1681.431) (-1719.336) (-1707.416) [-1684.491] * (-1705.609) (-1691.824) (-1696.340) [-1685.619] -- 0:16:38
3000 -- (-1682.973) (-1710.472) [-1673.686] (-1665.369) * (-1674.246) (-1693.269) (-1671.120) [-1666.032] -- 0:16:37
4000 -- (-1666.977) (-1684.943) [-1671.060] (-1674.494) * (-1692.079) (-1669.816) (-1661.824) [-1664.105] -- 0:20:45
5000 -- (-1667.104) (-1688.842) (-1659.928) [-1671.072] * [-1674.410] (-1664.458) (-1674.648) (-1658.409) -- 0:19:54
Average standard deviation of split frequencies: 0.087297
6000 -- (-1671.275) (-1673.827) (-1667.910) [-1661.801] * (-1676.132) (-1666.268) (-1683.548) [-1666.628] -- 0:19:19
7000 -- [-1664.306] (-1673.283) (-1674.849) (-1666.327) * (-1670.515) (-1671.842) (-1679.712) [-1660.327] -- 0:18:54
8000 -- (-1671.668) (-1666.813) (-1667.951) [-1674.147] * (-1666.294) (-1668.686) (-1678.827) [-1661.661] -- 0:18:36
9000 -- (-1678.017) [-1665.178] (-1667.088) (-1672.286) * (-1663.620) [-1656.385] (-1670.135) (-1667.170) -- 0:18:21
10000 -- [-1661.956] (-1663.716) (-1682.858) (-1678.801) * (-1665.250) (-1668.148) (-1669.538) [-1662.434] -- 0:19:48
Average standard deviation of split frequencies: 0.083189
11000 -- (-1657.315) [-1660.162] (-1670.185) (-1680.706) * [-1657.380] (-1669.950) (-1669.164) (-1668.334) -- 0:19:28
12000 -- (-1674.995) [-1663.675] (-1682.568) (-1670.068) * (-1675.462) (-1671.560) (-1660.001) [-1663.482] -- 0:19:12
13000 -- (-1676.703) (-1656.332) [-1657.585] (-1679.006) * (-1672.946) (-1682.556) (-1666.358) [-1666.542] -- 0:18:58
14000 -- [-1670.151] (-1665.663) (-1662.534) (-1671.427) * (-1665.775) (-1692.345) [-1669.684] (-1668.821) -- 0:18:46
15000 -- [-1667.928] (-1668.747) (-1676.781) (-1667.739) * (-1668.513) (-1683.873) (-1673.881) [-1659.058] -- 0:18:36
Average standard deviation of split frequencies: 0.063763
16000 -- (-1660.335) (-1667.349) (-1670.176) [-1661.322] * (-1674.708) (-1667.362) [-1658.092] (-1663.284) -- 0:18:27
17000 -- (-1678.433) (-1666.666) [-1657.457] (-1669.636) * (-1676.471) (-1666.277) (-1661.691) [-1671.814] -- 0:18:18
18000 -- (-1674.488) (-1662.576) (-1661.126) [-1668.871] * (-1671.466) [-1672.714] (-1668.261) (-1664.908) -- 0:19:05
19000 -- (-1660.596) (-1669.762) [-1661.406] (-1668.375) * (-1680.891) [-1674.449] (-1662.773) (-1673.049) -- 0:18:55
20000 -- [-1655.712] (-1671.968) (-1676.072) (-1670.852) * (-1678.441) [-1664.809] (-1664.961) (-1671.938) -- 0:18:47
Average standard deviation of split frequencies: 0.054988
21000 -- [-1660.174] (-1697.568) (-1668.331) (-1663.847) * (-1679.232) (-1660.307) (-1680.995) [-1672.560] -- 0:18:38
22000 -- [-1661.996] (-1676.039) (-1666.497) (-1675.064) * (-1661.682) [-1663.547] (-1671.460) (-1681.297) -- 0:18:31
23000 -- (-1673.519) [-1662.561] (-1668.278) (-1665.279) * (-1657.971) (-1668.254) [-1672.602] (-1695.659) -- 0:18:24
24000 -- (-1677.119) (-1664.591) (-1682.895) [-1659.096] * (-1663.563) [-1664.483] (-1669.228) (-1674.455) -- 0:18:18
25000 -- [-1673.083] (-1673.537) (-1676.025) (-1667.343) * (-1682.753) [-1661.662] (-1672.268) (-1665.936) -- 0:18:12
Average standard deviation of split frequencies: 0.047667
26000 -- (-1668.987) (-1689.904) [-1672.665] (-1662.835) * (-1665.756) (-1677.375) (-1668.879) [-1659.150] -- 0:18:43
27000 -- (-1669.639) (-1672.193) (-1674.083) [-1652.445] * (-1652.479) (-1675.225) [-1664.640] (-1676.151) -- 0:18:37
28000 -- (-1675.125) [-1661.506] (-1691.491) (-1658.216) * (-1670.778) [-1660.663] (-1681.364) (-1663.357) -- 0:18:30
29000 -- (-1664.011) [-1666.314] (-1683.755) (-1665.438) * (-1663.710) [-1668.498] (-1670.532) (-1674.212) -- 0:18:24
30000 -- [-1667.172] (-1666.290) (-1689.602) (-1666.800) * (-1671.118) (-1668.749) (-1696.035) [-1664.507] -- 0:18:19
Average standard deviation of split frequencies: 0.046646
31000 -- (-1662.470) (-1672.343) [-1664.109] (-1669.715) * (-1660.451) (-1673.716) (-1677.564) [-1678.910] -- 0:18:14
32000 -- (-1677.500) [-1656.493] (-1660.496) (-1674.990) * [-1659.745] (-1676.242) (-1673.002) (-1680.453) -- 0:18:09
33000 -- [-1672.492] (-1665.755) (-1676.914) (-1673.156) * (-1682.748) (-1670.856) [-1663.912] (-1677.693) -- 0:18:33
34000 -- (-1664.950) (-1663.383) [-1663.858] (-1682.902) * (-1675.958) (-1678.326) (-1661.268) [-1670.208] -- 0:18:28
35000 -- (-1666.827) (-1660.321) [-1665.438] (-1674.206) * (-1667.797) (-1677.665) (-1672.848) [-1661.395] -- 0:18:22
Average standard deviation of split frequencies: 0.046188
36000 -- (-1656.115) (-1662.170) [-1668.235] (-1695.178) * (-1675.596) [-1670.722] (-1676.512) (-1663.193) -- 0:18:17
37000 -- (-1667.450) [-1657.553] (-1668.765) (-1684.896) * (-1682.765) (-1661.103) (-1680.656) [-1662.284] -- 0:18:13
38000 -- (-1662.649) [-1660.131] (-1676.651) (-1661.353) * (-1665.538) (-1675.877) (-1664.060) [-1661.498] -- 0:18:08
39000 -- (-1679.818) [-1664.365] (-1677.897) (-1674.567) * (-1664.897) (-1669.013) [-1656.129] (-1679.021) -- 0:18:04
40000 -- (-1677.255) (-1666.018) [-1662.464] (-1678.408) * (-1665.296) (-1666.703) [-1655.200] (-1671.859) -- 0:18:00
Average standard deviation of split frequencies: 0.041367
41000 -- (-1661.434) (-1668.768) [-1655.712] (-1683.044) * (-1679.315) [-1655.710] (-1677.841) (-1668.566) -- 0:18:19
42000 -- (-1670.685) (-1665.726) [-1658.819] (-1676.923) * (-1669.987) (-1664.708) (-1654.704) [-1670.866] -- 0:18:14
43000 -- (-1668.708) [-1663.661] (-1672.328) (-1688.120) * [-1666.658] (-1660.122) (-1675.497) (-1670.616) -- 0:18:10
44000 -- (-1675.687) [-1662.076] (-1683.007) (-1670.161) * (-1669.680) [-1664.417] (-1693.205) (-1672.827) -- 0:18:06
45000 -- (-1671.822) [-1657.748] (-1685.272) (-1668.886) * (-1668.607) (-1672.502) (-1662.279) [-1662.194] -- 0:18:02
Average standard deviation of split frequencies: 0.037515
46000 -- (-1665.715) (-1675.772) [-1654.046] (-1676.701) * (-1668.905) (-1668.847) (-1678.834) [-1675.669] -- 0:17:58
47000 -- [-1660.940] (-1686.184) (-1672.008) (-1669.638) * (-1665.018) [-1660.007] (-1691.520) (-1680.810) -- 0:17:54
48000 -- [-1663.733] (-1664.786) (-1680.616) (-1657.070) * [-1668.473] (-1674.324) (-1664.853) (-1665.565) -- 0:17:51
49000 -- (-1686.987) [-1661.170] (-1659.933) (-1663.376) * (-1674.252) (-1683.587) (-1661.911) [-1668.678] -- 0:18:06
50000 -- (-1684.956) (-1659.187) [-1662.096] (-1669.511) * (-1675.561) (-1671.163) [-1661.502] (-1678.145) -- 0:18:03
Average standard deviation of split frequencies: 0.034115
51000 -- (-1680.604) [-1677.011] (-1668.816) (-1674.045) * (-1660.257) [-1669.973] (-1677.476) (-1663.167) -- 0:17:59
52000 -- [-1666.554] (-1671.823) (-1676.723) (-1678.797) * (-1689.198) (-1677.794) [-1670.599] (-1662.552) -- 0:17:55
53000 -- [-1659.566] (-1673.364) (-1664.651) (-1663.071) * [-1680.229] (-1670.237) (-1675.648) (-1663.552) -- 0:17:52
54000 -- (-1664.880) [-1655.599] (-1663.972) (-1664.275) * (-1669.524) (-1666.873) (-1670.990) [-1661.659] -- 0:17:48
55000 -- (-1681.379) (-1663.683) (-1666.426) [-1649.663] * (-1680.110) (-1675.686) [-1677.476] (-1682.962) -- 0:17:45
Average standard deviation of split frequencies: 0.034022
56000 -- (-1680.814) (-1679.620) [-1666.961] (-1666.283) * (-1669.182) (-1679.446) (-1681.023) [-1659.686] -- 0:17:42
57000 -- (-1687.848) [-1659.440] (-1669.674) (-1695.612) * [-1662.245] (-1678.977) (-1676.661) (-1657.032) -- 0:17:38
58000 -- (-1690.119) (-1661.041) [-1657.620] (-1684.390) * [-1652.731] (-1669.248) (-1679.664) (-1671.654) -- 0:17:51
59000 -- (-1682.522) (-1669.090) [-1661.312] (-1687.524) * (-1657.222) (-1666.463) [-1668.728] (-1665.210) -- 0:17:48
60000 -- (-1679.610) (-1670.439) [-1659.375] (-1671.411) * (-1682.787) (-1671.845) (-1661.933) [-1666.157] -- 0:17:45
Average standard deviation of split frequencies: 0.031926
61000 -- (-1696.996) (-1682.457) [-1666.535] (-1662.426) * (-1669.880) [-1670.546] (-1688.304) (-1660.267) -- 0:17:42
62000 -- [-1654.968] (-1675.043) (-1672.968) (-1664.991) * (-1660.053) (-1686.295) (-1678.507) [-1666.628] -- 0:17:39
63000 -- (-1667.701) (-1680.279) [-1673.569] (-1666.331) * (-1660.672) (-1659.485) (-1675.448) [-1663.061] -- 0:17:35
64000 -- (-1681.521) [-1677.157] (-1673.638) (-1679.120) * [-1664.814] (-1673.992) (-1669.940) (-1670.917) -- 0:17:33
65000 -- (-1678.037) [-1659.607] (-1675.314) (-1657.228) * (-1669.776) (-1683.155) (-1657.164) [-1675.842] -- 0:17:30
Average standard deviation of split frequencies: 0.029634
66000 -- (-1680.318) [-1659.136] (-1660.372) (-1663.389) * [-1658.011] (-1669.014) (-1668.250) (-1673.822) -- 0:17:41
67000 -- (-1677.089) (-1661.062) (-1679.244) [-1664.037] * (-1666.154) (-1667.323) [-1660.173] (-1664.625) -- 0:17:38
68000 -- (-1690.095) [-1658.445] (-1664.048) (-1665.316) * (-1676.802) (-1683.270) (-1665.232) [-1663.057] -- 0:17:35
69000 -- (-1665.846) (-1665.733) [-1670.175] (-1674.118) * (-1657.810) (-1672.302) (-1691.839) [-1668.932] -- 0:17:32
70000 -- (-1660.937) [-1656.771] (-1663.908) (-1675.339) * [-1655.840] (-1676.584) (-1669.987) (-1679.628) -- 0:17:29
Average standard deviation of split frequencies: 0.027100
71000 -- (-1671.280) (-1655.755) [-1664.890] (-1676.411) * (-1669.802) (-1665.785) (-1671.751) [-1674.912] -- 0:17:26
72000 -- (-1671.514) (-1671.902) (-1673.985) [-1656.069] * [-1661.428] (-1680.738) (-1674.758) (-1673.110) -- 0:17:24
73000 -- (-1672.725) (-1679.730) [-1660.119] (-1667.921) * (-1663.750) (-1674.275) (-1667.553) [-1661.574] -- 0:17:33
74000 -- (-1667.095) (-1692.295) (-1679.228) [-1669.426] * (-1668.173) [-1669.424] (-1672.460) (-1674.604) -- 0:17:31
75000 -- (-1665.253) (-1685.769) (-1674.882) [-1663.213] * [-1661.706] (-1675.758) (-1688.561) (-1671.089) -- 0:17:28
Average standard deviation of split frequencies: 0.026491
76000 -- (-1661.446) [-1665.565] (-1673.649) (-1673.223) * [-1666.367] (-1677.911) (-1678.467) (-1660.643) -- 0:17:25
77000 -- (-1676.787) (-1669.442) (-1678.615) [-1661.343] * (-1684.333) (-1665.388) (-1659.066) [-1664.047] -- 0:17:22
78000 -- (-1680.463) [-1657.170] (-1664.534) (-1658.584) * [-1671.785] (-1673.729) (-1662.407) (-1680.821) -- 0:17:20
79000 -- (-1659.287) [-1663.203] (-1686.212) (-1651.996) * (-1675.442) (-1670.633) (-1660.262) [-1660.197] -- 0:17:17
80000 -- (-1664.968) (-1675.569) (-1673.987) [-1657.027] * (-1662.914) (-1658.337) (-1670.472) [-1660.366] -- 0:17:26
Average standard deviation of split frequencies: 0.025489
81000 -- (-1675.373) (-1676.590) (-1691.047) [-1651.998] * (-1669.101) (-1658.915) [-1662.658] (-1669.254) -- 0:17:23
82000 -- (-1674.051) [-1663.530] (-1661.353) (-1670.965) * (-1679.548) (-1667.249) [-1660.806] (-1661.251) -- 0:17:21
83000 -- [-1667.945] (-1660.550) (-1665.785) (-1662.008) * [-1654.806] (-1674.753) (-1664.162) (-1671.269) -- 0:17:18
84000 -- [-1665.267] (-1680.481) (-1665.362) (-1666.862) * (-1665.894) (-1681.210) (-1664.230) [-1659.778] -- 0:17:15
85000 -- (-1685.406) (-1669.885) (-1666.645) [-1659.624] * (-1659.451) (-1668.372) (-1671.399) [-1661.704] -- 0:17:13
Average standard deviation of split frequencies: 0.023325
86000 -- (-1689.735) (-1659.300) (-1687.045) [-1664.374] * (-1658.953) (-1675.114) (-1676.207) [-1657.367] -- 0:17:10
87000 -- (-1674.777) [-1671.700] (-1676.249) (-1667.075) * (-1660.800) (-1671.138) (-1677.274) [-1662.883] -- 0:17:18
88000 -- (-1678.153) (-1665.898) [-1667.537] (-1658.846) * [-1653.837] (-1669.244) (-1664.272) (-1672.977) -- 0:17:16
89000 -- (-1678.011) (-1665.741) (-1663.238) [-1650.572] * (-1673.945) (-1667.406) (-1664.359) [-1665.589] -- 0:17:13
90000 -- (-1666.096) (-1662.738) (-1681.465) [-1673.746] * (-1674.396) (-1663.917) (-1667.393) [-1660.344] -- 0:17:11
Average standard deviation of split frequencies: 0.019912
91000 -- (-1667.407) (-1653.676) [-1657.221] (-1678.123) * (-1671.222) [-1660.998] (-1673.394) (-1675.543) -- 0:17:08
92000 -- (-1675.946) [-1666.363] (-1674.455) (-1672.876) * (-1671.591) (-1663.635) [-1669.147] (-1679.260) -- 0:17:06
93000 -- (-1671.769) [-1658.327] (-1693.653) (-1670.862) * (-1658.724) (-1676.560) [-1667.151] (-1679.693) -- 0:17:04
94000 -- (-1676.269) (-1662.417) (-1679.588) [-1664.889] * [-1671.968] (-1659.997) (-1687.277) (-1675.661) -- 0:17:11
95000 -- (-1674.040) (-1668.851) (-1674.395) [-1663.915] * (-1679.404) [-1662.167] (-1672.731) (-1671.272) -- 0:17:08
Average standard deviation of split frequencies: 0.019535
96000 -- (-1670.005) (-1668.689) [-1664.340] (-1666.669) * (-1678.660) [-1658.388] (-1662.168) (-1666.942) -- 0:17:06
97000 -- (-1680.229) (-1664.347) [-1680.457] (-1674.227) * [-1669.072] (-1669.727) (-1665.308) (-1677.502) -- 0:17:04
98000 -- (-1672.174) (-1671.225) [-1663.790] (-1669.813) * (-1681.598) (-1664.710) [-1651.107] (-1675.997) -- 0:17:01
99000 -- (-1672.011) [-1666.052] (-1669.179) (-1680.530) * (-1666.279) (-1669.343) [-1655.980] (-1683.782) -- 0:16:59
100000 -- [-1668.669] (-1686.916) (-1674.016) (-1664.430) * (-1660.725) (-1665.778) (-1679.739) [-1656.471] -- 0:16:56
Average standard deviation of split frequencies: 0.018833
101000 -- (-1683.687) (-1681.057) [-1660.715] (-1662.738) * (-1662.019) [-1663.160] (-1673.849) (-1677.693) -- 0:16:54
102000 -- [-1663.151] (-1680.950) (-1676.320) (-1666.723) * (-1667.042) (-1666.496) [-1654.365] (-1688.679) -- 0:16:52
103000 -- (-1673.064) (-1672.892) (-1665.143) [-1657.642] * (-1662.010) [-1669.967] (-1664.443) (-1685.064) -- 0:16:50
104000 -- (-1675.016) (-1684.516) [-1662.441] (-1669.751) * (-1670.976) (-1661.628) [-1663.233] (-1688.707) -- 0:16:47
105000 -- [-1656.616] (-1665.369) (-1666.884) (-1663.923) * (-1669.754) (-1680.583) (-1674.599) [-1659.844] -- 0:16:45
Average standard deviation of split frequencies: 0.018659
106000 -- (-1656.580) [-1659.476] (-1679.122) (-1670.580) * (-1660.987) [-1679.391] (-1670.380) (-1666.685) -- 0:16:35
107000 -- [-1660.410] (-1669.441) (-1695.530) (-1677.311) * (-1674.933) [-1660.970] (-1669.315) (-1669.706) -- 0:16:33
108000 -- [-1665.345] (-1672.085) (-1684.474) (-1667.628) * (-1683.401) [-1656.937] (-1670.515) (-1665.107) -- 0:16:31
109000 -- [-1656.594] (-1673.182) (-1678.520) (-1672.922) * (-1674.782) (-1661.619) (-1676.748) [-1659.435] -- 0:16:20
110000 -- [-1664.339] (-1678.863) (-1662.953) (-1664.213) * (-1661.364) (-1668.999) (-1681.893) [-1661.358] -- 0:16:19
Average standard deviation of split frequencies: 0.018520
111000 -- (-1682.855) (-1669.524) [-1658.854] (-1669.499) * [-1662.595] (-1666.466) (-1668.629) (-1682.744) -- 0:16:17
112000 -- (-1674.689) (-1665.354) (-1675.130) [-1666.635] * [-1660.967] (-1665.185) (-1670.135) (-1681.165) -- 0:16:15
113000 -- (-1665.642) [-1667.764] (-1677.908) (-1674.606) * [-1663.302] (-1681.627) (-1670.697) (-1667.432) -- 0:16:05
114000 -- (-1667.285) (-1700.929) [-1670.132] (-1690.213) * (-1668.262) (-1673.502) [-1664.582] (-1667.968) -- 0:16:03
115000 -- (-1670.656) [-1669.685] (-1657.219) (-1676.283) * (-1667.956) (-1669.766) (-1657.436) [-1667.020] -- 0:16:01
Average standard deviation of split frequencies: 0.016962
116000 -- (-1679.703) (-1669.420) [-1656.995] (-1679.412) * (-1663.265) (-1671.708) [-1658.506] (-1660.536) -- 0:15:52
117000 -- (-1664.908) (-1662.754) (-1673.742) [-1662.643] * (-1658.622) (-1665.084) [-1651.515] (-1670.626) -- 0:15:50
118000 -- [-1671.143] (-1665.365) (-1673.488) (-1667.721) * (-1671.602) [-1670.991] (-1669.640) (-1669.455) -- 0:15:49
119000 -- (-1677.309) [-1662.205] (-1658.498) (-1676.286) * (-1663.555) (-1675.773) (-1684.180) [-1677.552] -- 0:15:47
120000 -- (-1695.304) (-1669.382) (-1689.172) [-1667.025] * [-1667.486] (-1664.126) (-1678.369) (-1668.977) -- 0:15:38
Average standard deviation of split frequencies: 0.018259
121000 -- (-1675.482) (-1670.660) [-1658.066] (-1664.377) * (-1667.678) (-1666.381) (-1678.879) [-1652.681] -- 0:15:37
122000 -- (-1683.018) [-1663.500] (-1668.455) (-1669.105) * (-1669.115) [-1661.484] (-1668.494) (-1661.737) -- 0:15:35
123000 -- [-1673.029] (-1683.291) (-1665.228) (-1656.986) * (-1670.712) [-1662.181] (-1665.856) (-1661.149) -- 0:15:26
124000 -- (-1680.558) (-1678.451) (-1654.686) [-1660.811] * (-1672.949) (-1661.613) [-1666.092] (-1672.665) -- 0:15:25
125000 -- (-1672.679) (-1669.909) [-1652.160] (-1672.995) * (-1667.461) (-1674.882) (-1664.376) [-1662.315] -- 0:15:24
Average standard deviation of split frequencies: 0.019520
126000 -- (-1686.999) (-1656.229) (-1671.845) [-1656.743] * (-1662.367) (-1688.679) [-1663.918] (-1675.595) -- 0:15:22
127000 -- (-1679.559) (-1661.161) (-1670.008) [-1656.629] * (-1678.277) (-1675.874) [-1662.595] (-1689.858) -- 0:15:14
128000 -- (-1684.374) [-1658.544] (-1675.191) (-1663.492) * [-1657.992] (-1676.179) (-1670.621) (-1668.785) -- 0:15:12
129000 -- [-1678.509] (-1662.466) (-1668.631) (-1663.915) * (-1655.723) (-1677.715) [-1663.032] (-1676.379) -- 0:15:11
130000 -- (-1690.095) (-1662.687) [-1674.481] (-1672.116) * [-1662.032] (-1674.841) (-1676.677) (-1669.717) -- 0:15:03
Average standard deviation of split frequencies: 0.017878
131000 -- (-1673.577) (-1670.570) [-1677.591] (-1679.731) * (-1682.905) (-1659.058) (-1675.999) [-1664.096] -- 0:15:02
132000 -- [-1657.272] (-1678.138) (-1676.481) (-1675.484) * (-1671.968) (-1660.841) (-1680.496) [-1668.684] -- 0:15:00
133000 -- (-1666.261) [-1663.838] (-1664.107) (-1669.739) * [-1663.190] (-1667.530) (-1674.572) (-1666.974) -- 0:14:59
134000 -- [-1658.372] (-1684.714) (-1682.725) (-1656.914) * [-1666.707] (-1690.878) (-1682.690) (-1665.582) -- 0:14:51
135000 -- (-1672.898) (-1683.415) [-1662.621] (-1670.870) * (-1669.192) (-1671.373) (-1676.156) [-1666.008] -- 0:14:50
Average standard deviation of split frequencies: 0.016792
136000 -- (-1677.135) (-1679.919) [-1659.074] (-1658.668) * [-1661.541] (-1678.461) (-1672.552) (-1663.759) -- 0:14:55
137000 -- (-1664.990) (-1676.780) [-1655.251] (-1664.098) * (-1669.018) (-1670.705) [-1665.985] (-1670.109) -- 0:14:54
138000 -- (-1676.966) (-1689.732) [-1670.665] (-1673.426) * [-1661.756] (-1673.676) (-1674.666) (-1679.238) -- 0:14:53
139000 -- (-1683.840) (-1672.214) (-1659.054) [-1668.819] * [-1670.745] (-1667.052) (-1683.071) (-1662.511) -- 0:14:51
140000 -- (-1669.986) (-1675.075) [-1664.898] (-1662.880) * [-1664.921] (-1667.062) (-1680.341) (-1665.916) -- 0:14:50
Average standard deviation of split frequencies: 0.018990
141000 -- (-1662.919) [-1668.017] (-1669.383) (-1679.332) * (-1669.144) (-1666.833) [-1665.842] (-1669.328) -- 0:14:49
142000 -- (-1663.319) [-1655.279] (-1673.664) (-1658.054) * (-1660.239) [-1667.686] (-1661.851) (-1671.105) -- 0:14:48
143000 -- (-1670.710) (-1664.640) (-1679.215) [-1668.139] * (-1685.653) (-1670.007) [-1654.922] (-1675.450) -- 0:14:46
144000 -- (-1674.056) [-1661.204] (-1659.870) (-1669.316) * (-1671.045) (-1660.010) [-1656.268] (-1682.244) -- 0:14:51
145000 -- (-1670.700) (-1670.048) [-1661.081] (-1671.001) * (-1663.481) (-1672.299) [-1661.059] (-1667.707) -- 0:14:50
Average standard deviation of split frequencies: 0.018727
146000 -- (-1668.962) (-1661.392) [-1665.675] (-1677.527) * (-1671.819) (-1664.091) [-1663.326] (-1691.940) -- 0:14:49
147000 -- (-1676.243) [-1657.396] (-1662.972) (-1676.246) * (-1687.011) (-1671.688) (-1668.027) [-1662.685] -- 0:14:47
148000 -- (-1674.900) [-1664.461] (-1667.483) (-1666.868) * (-1693.604) (-1671.874) [-1656.613] (-1654.276) -- 0:14:46
149000 -- (-1672.238) [-1675.542] (-1663.040) (-1684.080) * (-1688.539) [-1667.392] (-1665.197) (-1664.359) -- 0:14:45
150000 -- [-1669.266] (-1673.736) (-1662.962) (-1663.877) * (-1668.437) (-1673.617) [-1672.644] (-1654.728) -- 0:14:43
Average standard deviation of split frequencies: 0.020441
151000 -- (-1668.781) (-1678.223) [-1658.395] (-1671.816) * (-1667.096) [-1668.337] (-1670.742) (-1669.745) -- 0:14:42
152000 -- (-1677.633) [-1668.086] (-1659.930) (-1672.214) * (-1663.663) [-1658.000] (-1662.871) (-1670.678) -- 0:14:47
153000 -- (-1683.443) (-1665.936) [-1662.885] (-1662.254) * (-1676.955) (-1671.852) [-1664.308] (-1677.555) -- 0:14:45
154000 -- (-1684.595) (-1665.774) [-1661.016] (-1664.564) * (-1678.624) (-1680.602) (-1666.359) [-1659.537] -- 0:14:44
155000 -- (-1678.405) (-1665.828) (-1678.084) [-1659.680] * (-1681.100) [-1675.398] (-1669.527) (-1668.688) -- 0:14:43
Average standard deviation of split frequencies: 0.021284
156000 -- (-1667.300) [-1660.545] (-1670.341) (-1655.469) * (-1670.707) (-1682.700) [-1666.002] (-1674.110) -- 0:14:41
157000 -- (-1668.858) (-1662.393) [-1663.262] (-1675.812) * (-1663.602) (-1670.480) [-1661.165] (-1669.008) -- 0:14:40
158000 -- (-1665.235) (-1683.265) (-1672.215) [-1667.494] * (-1663.807) (-1665.045) [-1658.173] (-1672.006) -- 0:14:39
159000 -- (-1677.081) [-1664.542] (-1661.969) (-1677.146) * [-1669.704] (-1666.395) (-1661.953) (-1668.285) -- 0:14:43
160000 -- (-1682.727) (-1657.920) [-1663.346] (-1667.170) * (-1661.442) (-1698.278) (-1667.253) [-1665.319] -- 0:14:42
Average standard deviation of split frequencies: 0.020734
161000 -- (-1673.753) [-1653.076] (-1673.812) (-1662.677) * (-1661.344) (-1665.794) [-1668.056] (-1677.459) -- 0:14:40
162000 -- (-1661.323) (-1660.124) [-1660.339] (-1683.837) * (-1664.831) (-1688.461) [-1661.088] (-1668.161) -- 0:14:39
163000 -- [-1668.535] (-1663.915) (-1666.846) (-1666.112) * (-1683.721) (-1673.138) (-1672.382) [-1670.618] -- 0:14:38
164000 -- (-1683.492) (-1682.955) (-1662.369) [-1666.132] * (-1683.608) (-1670.701) [-1658.057] (-1679.834) -- 0:14:36
165000 -- (-1662.938) (-1674.889) (-1676.896) [-1655.786] * (-1664.682) (-1664.944) [-1662.098] (-1661.530) -- 0:14:35
Average standard deviation of split frequencies: 0.020699
166000 -- [-1664.942] (-1673.029) (-1692.201) (-1677.625) * (-1663.996) [-1657.584] (-1678.154) (-1670.475) -- 0:14:39
167000 -- (-1679.178) (-1664.361) [-1661.288] (-1652.440) * (-1663.930) (-1663.686) [-1658.490] (-1670.550) -- 0:14:37
168000 -- [-1667.717] (-1679.444) (-1675.532) (-1663.591) * [-1666.867] (-1662.841) (-1676.450) (-1679.403) -- 0:14:36
169000 -- [-1659.727] (-1682.967) (-1670.598) (-1665.019) * (-1682.747) (-1673.610) (-1658.945) [-1657.744] -- 0:14:35
170000 -- (-1661.547) (-1677.441) [-1663.374] (-1661.743) * [-1669.856] (-1661.736) (-1680.705) (-1667.311) -- 0:14:33
Average standard deviation of split frequencies: 0.021176
171000 -- [-1662.579] (-1695.824) (-1659.405) (-1669.703) * [-1663.311] (-1655.355) (-1675.551) (-1672.121) -- 0:14:32
172000 -- (-1667.697) (-1690.664) [-1661.148] (-1665.356) * (-1663.284) (-1658.880) (-1677.042) [-1667.852] -- 0:14:36
173000 -- (-1671.439) (-1679.963) [-1662.680] (-1662.827) * (-1669.003) (-1663.528) [-1658.416] (-1681.594) -- 0:14:34
174000 -- (-1665.943) (-1675.185) [-1660.216] (-1666.192) * (-1677.273) (-1662.139) [-1660.757] (-1681.473) -- 0:14:33
175000 -- (-1673.077) (-1667.471) [-1661.154] (-1670.657) * (-1668.908) [-1659.798] (-1664.674) (-1682.848) -- 0:14:32
Average standard deviation of split frequencies: 0.023058
176000 -- [-1678.010] (-1662.483) (-1666.121) (-1674.967) * (-1661.900) [-1659.637] (-1668.854) (-1681.192) -- 0:14:30
177000 -- (-1667.705) (-1675.579) [-1653.249] (-1687.550) * (-1664.437) (-1670.604) (-1667.221) [-1669.955] -- 0:14:29
178000 -- (-1695.971) (-1683.674) [-1665.205] (-1665.949) * [-1658.934] (-1657.403) (-1672.280) (-1676.596) -- 0:14:28
179000 -- (-1670.506) (-1671.534) [-1666.892] (-1679.150) * [-1667.646] (-1666.002) (-1653.499) (-1677.578) -- 0:14:31
180000 -- (-1668.370) (-1677.680) [-1665.236] (-1680.028) * (-1674.418) (-1673.111) [-1657.734] (-1671.213) -- 0:14:30
Average standard deviation of split frequencies: 0.021918
181000 -- (-1669.904) (-1679.311) (-1668.341) [-1663.021] * (-1664.541) (-1673.691) [-1656.651] (-1657.189) -- 0:14:28
182000 -- (-1675.098) (-1677.157) [-1667.416] (-1668.062) * (-1673.286) [-1661.226] (-1663.976) (-1658.829) -- 0:14:27
183000 -- [-1659.008] (-1689.183) (-1661.681) (-1688.933) * (-1675.614) (-1665.168) (-1673.301) [-1664.531] -- 0:14:26
184000 -- [-1665.945] (-1678.636) (-1682.765) (-1659.304) * (-1679.026) (-1679.614) [-1673.010] (-1668.039) -- 0:14:29
185000 -- (-1661.374) (-1664.423) (-1678.023) [-1667.574] * (-1675.519) (-1679.596) (-1658.486) [-1657.548] -- 0:14:27
Average standard deviation of split frequencies: 0.021740
186000 -- (-1680.969) [-1668.044] (-1675.110) (-1677.956) * (-1674.148) (-1655.673) (-1666.553) [-1669.148] -- 0:14:26
187000 -- (-1679.730) (-1683.703) (-1690.355) [-1657.695] * (-1677.809) (-1685.318) [-1660.813] (-1661.083) -- 0:14:25
188000 -- [-1673.674] (-1679.413) (-1654.876) (-1665.124) * (-1664.911) (-1666.820) (-1680.601) [-1663.605] -- 0:14:23
189000 -- (-1683.266) (-1680.745) [-1657.022] (-1671.980) * (-1666.047) (-1663.264) (-1667.649) [-1667.414] -- 0:14:22
190000 -- (-1672.821) (-1664.009) [-1654.029] (-1665.613) * (-1674.235) (-1654.996) (-1691.712) [-1665.272] -- 0:14:21
Average standard deviation of split frequencies: 0.021208
191000 -- (-1677.826) (-1678.706) [-1658.667] (-1669.108) * (-1668.851) [-1657.095] (-1673.318) (-1671.757) -- 0:14:24
192000 -- (-1671.282) (-1673.518) (-1672.211) [-1662.258] * (-1676.383) [-1658.389] (-1666.354) (-1667.890) -- 0:14:22
193000 -- (-1672.390) [-1664.330] (-1672.040) (-1663.943) * (-1665.851) [-1666.225] (-1675.289) (-1677.088) -- 0:14:21
194000 -- (-1676.688) (-1673.411) (-1658.494) [-1660.715] * (-1684.129) (-1658.527) [-1671.262] (-1667.575) -- 0:14:20
195000 -- (-1682.774) (-1666.786) [-1654.977] (-1671.777) * (-1671.460) (-1671.421) [-1663.163] (-1675.663) -- 0:14:18
Average standard deviation of split frequencies: 0.020738
196000 -- (-1671.858) [-1670.089] (-1685.300) (-1650.823) * (-1673.121) (-1680.043) [-1670.368] (-1672.418) -- 0:14:17
197000 -- [-1663.293] (-1676.233) (-1682.638) (-1674.514) * (-1675.999) (-1672.519) [-1673.370] (-1672.927) -- 0:14:15
198000 -- (-1670.450) [-1668.785] (-1663.982) (-1678.252) * (-1682.189) [-1662.990] (-1673.336) (-1670.217) -- 0:14:14
199000 -- [-1665.146] (-1673.253) (-1658.840) (-1668.147) * (-1672.985) [-1667.277] (-1675.048) (-1670.426) -- 0:14:17
200000 -- (-1686.604) [-1679.085] (-1667.264) (-1670.611) * (-1669.675) [-1666.754] (-1662.565) (-1692.413) -- 0:14:16
Average standard deviation of split frequencies: 0.019524
201000 -- (-1676.127) [-1666.384] (-1666.302) (-1679.239) * (-1665.448) (-1684.020) [-1660.853] (-1682.597) -- 0:14:14
202000 -- (-1673.184) (-1670.900) [-1653.853] (-1673.305) * (-1660.073) [-1673.927] (-1668.221) (-1680.081) -- 0:14:13
203000 -- (-1676.117) (-1681.388) (-1672.370) [-1658.061] * (-1659.536) [-1658.618] (-1660.817) (-1677.609) -- 0:14:11
204000 -- [-1661.621] (-1677.940) (-1664.642) (-1679.943) * (-1661.788) [-1663.856] (-1685.754) (-1675.859) -- 0:14:10
205000 -- [-1650.580] (-1659.375) (-1665.792) (-1678.990) * (-1668.605) [-1669.238] (-1689.345) (-1671.331) -- 0:14:09
Average standard deviation of split frequencies: 0.018866
206000 -- (-1671.630) [-1657.703] (-1656.130) (-1682.826) * (-1672.362) (-1674.916) [-1677.579] (-1686.584) -- 0:14:07
207000 -- [-1660.969] (-1673.800) (-1655.756) (-1671.121) * [-1652.011] (-1664.797) (-1682.227) (-1674.748) -- 0:14:06
208000 -- (-1675.015) (-1662.973) [-1665.746] (-1674.300) * [-1659.865] (-1675.367) (-1659.067) (-1672.579) -- 0:14:05
209000 -- (-1663.397) (-1667.068) [-1668.353] (-1679.832) * (-1668.259) (-1675.201) (-1682.530) [-1662.528] -- 0:14:07
210000 -- (-1667.531) (-1673.024) [-1661.355] (-1672.470) * (-1674.398) (-1690.940) (-1666.570) [-1675.777] -- 0:14:06
Average standard deviation of split frequencies: 0.018896
211000 -- (-1678.627) (-1658.383) (-1662.964) [-1659.085] * (-1675.641) [-1668.575] (-1686.613) (-1678.278) -- 0:14:01
212000 -- [-1668.085] (-1683.134) (-1666.915) (-1689.374) * [-1668.432] (-1666.018) (-1666.850) (-1683.261) -- 0:14:00
213000 -- [-1666.953] (-1676.295) (-1655.000) (-1692.346) * (-1662.720) [-1654.221] (-1665.185) (-1664.458) -- 0:13:58
214000 -- (-1674.454) [-1675.410] (-1653.217) (-1681.356) * [-1654.761] (-1669.034) (-1682.216) (-1668.559) -- 0:13:57
215000 -- (-1674.575) (-1666.411) [-1659.726] (-1671.994) * (-1661.048) [-1661.856] (-1656.434) (-1672.320) -- 0:13:52
Average standard deviation of split frequencies: 0.019157
216000 -- (-1678.560) (-1667.434) [-1660.525] (-1676.488) * (-1662.482) (-1676.121) [-1666.147] (-1660.898) -- 0:13:51
217000 -- (-1667.407) [-1661.467] (-1660.847) (-1683.669) * (-1682.203) [-1659.556] (-1665.651) (-1666.325) -- 0:13:49
218000 -- (-1666.550) [-1675.971] (-1673.968) (-1671.957) * [-1668.613] (-1660.376) (-1663.346) (-1665.561) -- 0:13:45
219000 -- (-1674.179) (-1667.809) [-1675.825] (-1680.604) * (-1682.916) [-1666.653] (-1658.192) (-1670.713) -- 0:13:43
220000 -- (-1670.165) [-1664.398] (-1664.311) (-1676.632) * (-1669.053) (-1671.164) (-1677.141) [-1654.198] -- 0:13:42
Average standard deviation of split frequencies: 0.018752
221000 -- (-1679.898) (-1672.140) [-1660.752] (-1677.495) * (-1668.376) (-1668.511) (-1672.403) [-1656.589] -- 0:13:41
222000 -- (-1668.338) (-1670.144) [-1667.645] (-1662.281) * (-1682.264) [-1654.868] (-1670.781) (-1667.881) -- 0:13:36
223000 -- (-1677.279) (-1670.946) (-1678.292) [-1659.425] * (-1665.153) [-1666.848] (-1677.692) (-1654.993) -- 0:13:35
224000 -- (-1673.491) (-1678.637) [-1668.435] (-1671.143) * [-1662.622] (-1663.969) (-1679.608) (-1689.560) -- 0:13:34
225000 -- (-1673.697) (-1677.214) (-1669.533) [-1665.367] * (-1658.196) (-1671.432) [-1660.097] (-1691.876) -- 0:13:29
Average standard deviation of split frequencies: 0.017753
226000 -- [-1662.596] (-1675.811) (-1689.699) (-1675.611) * [-1661.975] (-1683.769) (-1669.467) (-1692.755) -- 0:13:28
227000 -- (-1659.490) [-1657.484] (-1678.620) (-1679.470) * (-1676.496) [-1671.118] (-1668.868) (-1682.990) -- 0:13:27
228000 -- (-1672.692) (-1678.906) (-1677.541) [-1664.350] * (-1682.370) [-1657.818] (-1670.434) (-1678.272) -- 0:13:25
229000 -- (-1673.756) (-1678.110) (-1665.409) [-1671.049] * (-1685.307) (-1674.458) (-1671.931) [-1667.569] -- 0:13:21
230000 -- (-1669.506) (-1670.629) (-1673.036) [-1665.785] * [-1659.807] (-1664.148) (-1682.036) (-1671.979) -- 0:13:20
Average standard deviation of split frequencies: 0.017575
231000 -- (-1675.855) (-1665.139) (-1670.348) [-1657.118] * (-1668.695) (-1675.069) (-1668.020) [-1661.959] -- 0:13:18
232000 -- [-1663.812] (-1675.613) (-1680.042) (-1668.613) * [-1655.034] (-1667.744) (-1678.333) (-1675.898) -- 0:13:14
233000 -- (-1665.744) (-1671.976) (-1687.769) [-1667.390] * (-1656.005) [-1667.713] (-1672.205) (-1692.179) -- 0:13:13
234000 -- (-1676.806) [-1666.729] (-1688.821) (-1658.618) * (-1667.405) [-1664.588] (-1671.565) (-1674.101) -- 0:13:12
235000 -- (-1669.074) (-1664.333) (-1671.083) [-1660.277] * (-1679.132) (-1673.766) [-1677.879] (-1663.973) -- 0:13:11
Average standard deviation of split frequencies: 0.017578
236000 -- (-1675.800) (-1671.443) [-1664.936] (-1668.153) * (-1674.871) (-1676.240) (-1676.153) [-1661.978] -- 0:13:09
237000 -- (-1661.213) (-1663.062) [-1660.354] (-1677.144) * (-1671.013) [-1661.151] (-1679.131) (-1663.940) -- 0:13:08
238000 -- (-1655.160) (-1670.213) [-1655.658] (-1686.599) * (-1701.166) (-1664.528) (-1672.025) [-1663.143] -- 0:13:07
239000 -- [-1660.831] (-1673.896) (-1664.665) (-1669.078) * [-1663.121] (-1674.100) (-1683.396) (-1665.407) -- 0:13:06
240000 -- (-1659.583) (-1674.592) [-1670.047] (-1669.476) * (-1666.959) [-1672.783] (-1678.831) (-1663.867) -- 0:13:05
Average standard deviation of split frequencies: 0.019022
241000 -- (-1662.769) (-1677.422) [-1661.449] (-1670.548) * (-1673.885) (-1674.289) (-1661.479) [-1667.383] -- 0:13:04
242000 -- [-1670.098] (-1670.928) (-1680.744) (-1670.644) * [-1668.949] (-1668.721) (-1664.031) (-1681.541) -- 0:12:59
243000 -- (-1681.658) [-1671.797] (-1659.672) (-1681.543) * [-1670.380] (-1674.566) (-1659.207) (-1676.923) -- 0:12:58
244000 -- (-1676.105) [-1665.996] (-1668.266) (-1671.325) * [-1664.253] (-1666.941) (-1659.550) (-1679.889) -- 0:12:57
245000 -- (-1664.153) (-1693.744) [-1654.134] (-1673.009) * (-1670.207) (-1666.929) [-1667.098] (-1668.371) -- 0:12:56
Average standard deviation of split frequencies: 0.018694
246000 -- [-1666.431] (-1661.121) (-1663.146) (-1667.128) * (-1685.858) [-1668.977] (-1673.916) (-1670.749) -- 0:12:52
247000 -- [-1658.603] (-1672.884) (-1668.225) (-1671.027) * (-1680.127) (-1668.953) [-1664.632] (-1661.577) -- 0:12:51
248000 -- [-1657.079] (-1664.455) (-1672.978) (-1672.078) * (-1677.530) [-1670.326] (-1671.875) (-1670.093) -- 0:12:50
249000 -- (-1660.697) (-1664.231) [-1663.715] (-1668.818) * (-1692.181) (-1667.223) (-1665.991) [-1667.640] -- 0:12:46
250000 -- (-1666.194) [-1662.205] (-1677.801) (-1667.120) * (-1684.263) (-1675.530) [-1658.731] (-1679.179) -- 0:12:45
Average standard deviation of split frequencies: 0.018137
251000 -- (-1673.923) (-1664.599) [-1669.932] (-1670.805) * (-1682.891) [-1655.295] (-1663.525) (-1671.871) -- 0:12:43
252000 -- (-1677.739) (-1662.814) [-1673.676] (-1666.957) * (-1672.779) (-1664.011) [-1660.956] (-1681.683) -- 0:12:39
253000 -- [-1670.919] (-1668.517) (-1667.168) (-1666.970) * [-1660.676] (-1674.638) (-1670.638) (-1659.358) -- 0:12:38
254000 -- (-1686.078) [-1669.281] (-1681.558) (-1673.856) * [-1665.680] (-1665.045) (-1676.525) (-1660.127) -- 0:12:37
255000 -- (-1669.084) (-1667.186) (-1681.866) [-1652.436] * (-1678.497) (-1672.564) [-1665.688] (-1660.217) -- 0:12:36
Average standard deviation of split frequencies: 0.018128
256000 -- (-1672.724) [-1672.332] (-1686.618) (-1675.192) * (-1679.491) (-1662.347) (-1667.104) [-1666.002] -- 0:12:32
257000 -- [-1655.012] (-1664.420) (-1680.417) (-1665.359) * [-1677.153] (-1664.692) (-1680.046) (-1660.829) -- 0:12:31
258000 -- [-1658.851] (-1672.016) (-1665.434) (-1682.276) * [-1670.675] (-1666.509) (-1673.921) (-1672.006) -- 0:12:30
259000 -- (-1671.135) (-1665.273) (-1673.903) [-1668.180] * (-1675.636) (-1665.322) [-1663.962] (-1670.312) -- 0:12:29
260000 -- (-1664.644) (-1670.525) (-1668.624) [-1666.540] * (-1661.758) (-1671.028) [-1664.395] (-1672.557) -- 0:12:28
Average standard deviation of split frequencies: 0.019612
261000 -- (-1653.943) (-1652.717) [-1657.675] (-1681.393) * [-1658.350] (-1668.837) (-1661.558) (-1663.262) -- 0:12:27
262000 -- (-1662.191) (-1665.954) [-1660.156] (-1661.618) * (-1661.637) [-1662.728] (-1670.205) (-1668.236) -- 0:12:26
263000 -- (-1670.898) (-1659.100) [-1656.591] (-1685.318) * (-1661.793) (-1663.647) [-1659.337] (-1676.452) -- 0:12:25
264000 -- (-1676.337) (-1676.731) [-1655.982] (-1664.916) * (-1660.215) (-1683.280) [-1661.890] (-1664.403) -- 0:12:24
265000 -- [-1654.327] (-1666.457) (-1665.804) (-1670.565) * (-1686.423) (-1680.130) [-1665.034] (-1681.304) -- 0:12:23
Average standard deviation of split frequencies: 0.020085
266000 -- [-1654.589] (-1671.013) (-1662.572) (-1675.221) * [-1672.693] (-1668.770) (-1655.467) (-1666.602) -- 0:12:25
267000 -- (-1664.294) (-1674.944) [-1663.897] (-1677.107) * [-1663.256] (-1674.014) (-1667.578) (-1666.818) -- 0:12:23
268000 -- (-1662.159) (-1669.119) [-1664.120] (-1670.269) * (-1675.417) [-1665.464] (-1673.128) (-1662.915) -- 0:12:22
269000 -- (-1656.056) (-1669.933) [-1668.314] (-1668.995) * (-1678.608) (-1672.114) (-1670.707) [-1655.177] -- 0:12:21
270000 -- [-1658.511] (-1663.477) (-1674.513) (-1665.992) * [-1664.032] (-1668.748) (-1672.139) (-1676.440) -- 0:12:20
Average standard deviation of split frequencies: 0.019506
271000 -- (-1665.780) (-1664.713) (-1668.466) [-1662.710] * (-1670.820) [-1674.432] (-1665.334) (-1683.849) -- 0:12:19
272000 -- [-1655.292] (-1673.087) (-1668.453) (-1671.352) * (-1669.258) (-1675.984) [-1660.180] (-1684.268) -- 0:12:18
273000 -- (-1665.299) (-1678.554) [-1667.199] (-1668.656) * (-1682.079) (-1672.736) [-1665.594] (-1666.111) -- 0:12:17
274000 -- [-1657.807] (-1667.194) (-1674.563) (-1681.246) * (-1694.655) (-1669.861) (-1665.184) [-1662.418] -- 0:12:19
275000 -- [-1676.680] (-1673.553) (-1657.024) (-1662.348) * (-1679.648) (-1657.458) [-1665.752] (-1667.300) -- 0:12:18
Average standard deviation of split frequencies: 0.019433
276000 -- (-1674.905) (-1666.712) [-1658.766] (-1661.084) * (-1675.844) (-1668.587) [-1665.985] (-1680.488) -- 0:12:14
277000 -- [-1658.725] (-1667.740) (-1656.315) (-1666.400) * [-1666.799] (-1656.381) (-1660.976) (-1663.589) -- 0:12:13
278000 -- (-1669.875) (-1666.721) (-1664.388) [-1655.597] * (-1685.473) (-1661.428) [-1662.315] (-1662.597) -- 0:12:12
279000 -- (-1666.243) (-1686.779) (-1663.086) [-1659.553] * (-1678.566) [-1665.675] (-1668.412) (-1671.505) -- 0:12:08
280000 -- (-1658.693) (-1665.954) [-1664.464] (-1662.207) * (-1667.093) (-1664.914) [-1661.541] (-1668.580) -- 0:12:07
Average standard deviation of split frequencies: 0.019334
281000 -- (-1695.286) [-1660.851] (-1672.347) (-1662.723) * [-1665.049] (-1669.932) (-1675.379) (-1678.514) -- 0:12:06
282000 -- (-1677.315) [-1667.197] (-1684.903) (-1662.365) * (-1659.838) (-1669.013) (-1661.836) [-1674.631] -- 0:12:05
283000 -- (-1664.749) [-1670.785] (-1670.605) (-1667.836) * [-1660.073] (-1663.052) (-1662.046) (-1671.890) -- 0:12:04
284000 -- (-1668.961) (-1668.962) (-1668.191) [-1657.493] * (-1671.755) [-1672.047] (-1673.611) (-1671.146) -- 0:12:01
285000 -- (-1666.410) (-1665.991) (-1666.422) [-1661.861] * [-1654.572] (-1672.820) (-1666.678) (-1692.196) -- 0:12:00
Average standard deviation of split frequencies: 0.019633
286000 -- (-1677.031) [-1664.328] (-1674.534) (-1669.575) * (-1678.191) (-1683.428) [-1664.077] (-1683.243) -- 0:11:58
287000 -- [-1665.732] (-1682.914) (-1682.667) (-1664.086) * (-1687.740) (-1663.626) (-1670.256) [-1672.259] -- 0:11:57
288000 -- (-1661.815) (-1692.641) [-1676.726] (-1680.460) * (-1678.831) [-1670.939] (-1676.133) (-1680.800) -- 0:11:54
289000 -- [-1665.605] (-1685.560) (-1658.480) (-1679.136) * (-1683.569) [-1649.222] (-1662.988) (-1681.030) -- 0:11:53
290000 -- [-1667.103] (-1669.920) (-1664.965) (-1676.714) * [-1663.848] (-1661.821) (-1667.131) (-1688.637) -- 0:11:52
Average standard deviation of split frequencies: 0.019570
291000 -- [-1661.298] (-1673.200) (-1660.757) (-1664.444) * [-1653.988] (-1663.551) (-1682.585) (-1675.126) -- 0:11:49
292000 -- (-1673.741) (-1662.873) [-1669.890] (-1678.828) * (-1657.282) [-1654.921] (-1684.309) (-1659.350) -- 0:11:48
293000 -- [-1673.557] (-1677.100) (-1671.484) (-1676.428) * (-1662.310) [-1658.667] (-1685.646) (-1658.291) -- 0:11:47
294000 -- [-1662.761] (-1685.066) (-1661.834) (-1670.269) * (-1674.704) (-1668.817) (-1660.567) [-1661.642] -- 0:11:43
295000 -- (-1652.113) (-1681.949) (-1664.838) [-1655.111] * (-1668.475) (-1677.565) [-1661.044] (-1657.136) -- 0:11:42
Average standard deviation of split frequencies: 0.019288
296000 -- (-1687.308) [-1662.197] (-1658.811) (-1677.153) * [-1654.210] (-1674.917) (-1676.902) (-1663.616) -- 0:11:41
297000 -- (-1666.668) (-1658.929) [-1650.580] (-1671.885) * (-1677.848) (-1668.605) (-1662.049) [-1661.236] -- 0:11:40
298000 -- (-1672.261) (-1669.755) [-1663.358] (-1671.708) * (-1656.772) (-1673.988) (-1660.629) [-1665.713] -- 0:11:37
299000 -- (-1681.582) (-1681.234) [-1660.570] (-1661.788) * [-1663.339] (-1669.591) (-1666.356) (-1678.420) -- 0:11:36
300000 -- (-1655.118) [-1670.558] (-1659.173) (-1666.117) * (-1671.163) [-1654.535] (-1658.944) (-1677.759) -- 0:11:35
Average standard deviation of split frequencies: 0.019128
301000 -- (-1671.225) (-1688.784) [-1660.259] (-1664.967) * (-1651.915) [-1661.367] (-1673.347) (-1679.415) -- 0:11:34
302000 -- (-1670.211) (-1670.534) [-1656.698] (-1682.476) * [-1662.894] (-1661.321) (-1689.493) (-1665.673) -- 0:11:31
303000 -- (-1656.386) (-1672.349) (-1665.515) [-1673.161] * (-1677.937) [-1656.482] (-1679.402) (-1669.274) -- 0:11:30
304000 -- [-1649.778] (-1680.210) (-1670.318) (-1674.597) * (-1674.369) [-1678.670] (-1671.226) (-1662.277) -- 0:11:29
305000 -- (-1660.375) [-1667.825] (-1664.566) (-1675.127) * (-1671.230) (-1665.401) (-1670.192) [-1667.348] -- 0:11:25
Average standard deviation of split frequencies: 0.018658
306000 -- (-1671.640) (-1670.066) [-1659.675] (-1668.613) * (-1673.283) [-1659.964] (-1669.636) (-1660.783) -- 0:11:24
307000 -- (-1677.684) (-1689.116) [-1657.875] (-1659.534) * (-1676.387) [-1660.010] (-1680.322) (-1669.277) -- 0:11:23
308000 -- (-1667.331) (-1672.573) (-1673.832) [-1671.581] * (-1671.346) [-1657.354] (-1690.801) (-1680.301) -- 0:11:23
309000 -- [-1661.807] (-1669.528) (-1670.953) (-1667.727) * (-1658.867) [-1655.939] (-1660.080) (-1681.011) -- 0:11:19
310000 -- (-1663.106) [-1664.908] (-1671.038) (-1693.741) * [-1656.879] (-1670.726) (-1672.223) (-1678.308) -- 0:11:18
Average standard deviation of split frequencies: 0.018849
311000 -- (-1669.234) (-1664.422) [-1660.554] (-1685.322) * (-1675.597) (-1664.821) [-1664.632] (-1679.118) -- 0:11:17
312000 -- (-1665.513) [-1652.143] (-1665.704) (-1668.711) * (-1675.674) (-1656.462) [-1668.104] (-1686.308) -- 0:11:14
313000 -- [-1657.637] (-1663.033) (-1670.141) (-1685.535) * [-1676.931] (-1677.298) (-1663.521) (-1672.094) -- 0:11:13
314000 -- [-1663.270] (-1674.083) (-1676.456) (-1667.600) * [-1671.265] (-1679.833) (-1666.355) (-1662.142) -- 0:11:12
315000 -- (-1668.299) (-1672.558) [-1667.787] (-1665.354) * (-1665.867) (-1681.503) [-1662.110] (-1677.703) -- 0:11:09
Average standard deviation of split frequencies: 0.017537
316000 -- (-1670.613) (-1693.855) [-1671.737] (-1675.209) * (-1667.672) (-1668.475) (-1659.139) [-1666.166] -- 0:11:08
317000 -- [-1673.345] (-1669.259) (-1669.868) (-1670.190) * (-1661.550) (-1678.237) [-1659.833] (-1664.384) -- 0:11:07
318000 -- (-1673.433) (-1681.597) (-1662.252) [-1667.106] * (-1666.344) (-1664.504) [-1660.867] (-1661.609) -- 0:11:06
319000 -- [-1666.927] (-1676.225) (-1693.814) (-1669.999) * (-1669.508) (-1678.263) (-1667.948) [-1662.544] -- 0:11:03
320000 -- [-1656.916] (-1668.363) (-1681.653) (-1674.171) * (-1683.695) [-1663.444] (-1663.804) (-1668.342) -- 0:11:03
Average standard deviation of split frequencies: 0.017837
321000 -- (-1663.317) (-1671.574) (-1694.075) [-1656.593] * (-1681.379) [-1666.791] (-1661.889) (-1659.808) -- 0:11:02
322000 -- (-1671.183) (-1656.211) [-1663.543] (-1670.488) * (-1697.363) (-1673.032) [-1660.840] (-1661.808) -- 0:10:59
323000 -- (-1676.646) [-1663.522] (-1691.502) (-1668.390) * (-1680.647) (-1667.295) [-1656.548] (-1675.140) -- 0:10:58
324000 -- (-1663.014) [-1660.951] (-1664.654) (-1663.891) * (-1670.173) (-1673.690) [-1663.316] (-1673.507) -- 0:10:57
325000 -- (-1659.799) (-1674.660) [-1659.416] (-1670.794) * (-1681.870) (-1693.145) (-1663.672) [-1666.545] -- 0:10:56
Average standard deviation of split frequencies: 0.017899
326000 -- (-1664.718) (-1672.452) (-1669.201) [-1660.074] * (-1680.014) [-1662.028] (-1659.535) (-1666.522) -- 0:10:53
327000 -- (-1671.441) (-1686.614) (-1666.536) [-1661.190] * [-1653.726] (-1674.538) (-1680.553) (-1674.796) -- 0:10:52
328000 -- (-1655.876) (-1694.353) [-1665.342] (-1673.675) * (-1664.564) [-1666.836] (-1665.159) (-1672.310) -- 0:10:51
329000 -- (-1669.906) (-1680.478) (-1665.761) [-1666.545] * [-1666.857] (-1678.144) (-1666.490) (-1676.359) -- 0:10:48
330000 -- (-1666.533) (-1675.160) [-1654.352] (-1686.121) * (-1669.079) (-1668.897) [-1663.093] (-1679.574) -- 0:10:47
Average standard deviation of split frequencies: 0.017583
331000 -- [-1651.944] (-1665.378) (-1659.856) (-1683.363) * (-1679.696) [-1663.603] (-1686.051) (-1661.402) -- 0:10:46
332000 -- [-1658.721] (-1667.369) (-1669.495) (-1671.260) * (-1670.156) [-1664.358] (-1684.714) (-1662.792) -- 0:10:45
333000 -- (-1672.051) (-1671.883) [-1670.988] (-1678.566) * (-1667.466) (-1675.785) (-1671.164) [-1667.995] -- 0:10:42
334000 -- [-1666.412] (-1678.519) (-1676.788) (-1655.392) * (-1675.978) [-1671.111] (-1682.088) (-1672.862) -- 0:10:42
335000 -- (-1671.737) (-1671.471) [-1661.113] (-1654.946) * (-1668.903) [-1667.207] (-1660.322) (-1669.916) -- 0:10:41
Average standard deviation of split frequencies: 0.016586
336000 -- (-1673.252) (-1674.613) [-1663.046] (-1667.684) * [-1659.688] (-1661.903) (-1664.241) (-1669.299) -- 0:10:38
337000 -- [-1672.103] (-1674.067) (-1670.123) (-1668.339) * (-1659.788) [-1661.316] (-1659.515) (-1686.977) -- 0:10:37
338000 -- (-1689.326) (-1660.463) [-1660.770] (-1673.103) * (-1666.572) (-1660.601) [-1661.226] (-1687.408) -- 0:10:36
339000 -- (-1682.295) [-1662.066] (-1674.574) (-1683.655) * (-1667.723) (-1667.005) [-1664.330] (-1681.506) -- 0:10:35
340000 -- (-1698.489) (-1663.243) [-1666.791] (-1676.446) * (-1663.188) (-1668.044) [-1662.940] (-1676.274) -- 0:10:34
Average standard deviation of split frequencies: 0.016759
341000 -- (-1668.294) (-1688.506) (-1660.669) [-1668.536] * (-1681.166) (-1661.206) [-1666.984] (-1664.692) -- 0:10:33
342000 -- (-1678.572) (-1668.422) (-1663.503) [-1655.323] * (-1678.748) (-1676.875) (-1653.065) [-1672.990] -- 0:10:32
343000 -- (-1685.331) [-1665.715] (-1663.276) (-1665.364) * [-1669.002] (-1681.957) (-1664.122) (-1674.393) -- 0:10:34
344000 -- (-1672.797) (-1680.052) [-1676.812] (-1659.429) * (-1672.058) (-1687.616) [-1653.752] (-1658.897) -- 0:10:33
345000 -- [-1666.161] (-1677.676) (-1688.452) (-1676.235) * (-1661.906) (-1669.378) (-1665.632) [-1663.637] -- 0:10:32
Average standard deviation of split frequencies: 0.017076
346000 -- (-1671.886) [-1666.451] (-1661.384) (-1695.588) * [-1666.865] (-1663.275) (-1684.336) (-1656.740) -- 0:10:31
347000 -- (-1672.809) [-1665.469] (-1671.317) (-1677.509) * (-1669.023) (-1662.945) (-1690.201) [-1658.764] -- 0:10:30
348000 -- (-1672.601) (-1674.744) [-1656.753] (-1663.413) * (-1672.778) [-1663.805] (-1691.162) (-1663.098) -- 0:10:29
349000 -- (-1662.481) (-1691.708) (-1670.681) [-1671.238] * [-1671.994] (-1663.181) (-1661.102) (-1656.958) -- 0:10:28
350000 -- (-1667.438) (-1679.530) (-1671.569) [-1668.521] * (-1673.994) (-1659.061) [-1664.573] (-1673.308) -- 0:10:27
Average standard deviation of split frequencies: 0.015982
351000 -- (-1675.927) (-1660.996) (-1663.065) [-1665.111] * (-1662.336) [-1656.002] (-1679.930) (-1676.593) -- 0:10:26
352000 -- (-1692.218) (-1682.334) [-1662.706] (-1666.305) * (-1683.077) [-1663.558] (-1664.354) (-1666.415) -- 0:10:24
353000 -- [-1675.669] (-1677.097) (-1669.390) (-1679.668) * (-1673.756) [-1659.567] (-1660.650) (-1685.367) -- 0:10:23
354000 -- (-1673.317) [-1664.331] (-1670.299) (-1676.545) * (-1663.028) [-1667.914] (-1663.591) (-1678.845) -- 0:10:22
355000 -- [-1662.718] (-1678.763) (-1670.163) (-1665.334) * [-1663.705] (-1674.492) (-1664.258) (-1678.454) -- 0:10:21
Average standard deviation of split frequencies: 0.015919
356000 -- [-1665.027] (-1674.796) (-1666.728) (-1670.239) * (-1662.967) (-1677.418) [-1658.042] (-1673.636) -- 0:10:18
357000 -- (-1670.008) (-1695.437) [-1668.842] (-1685.442) * (-1663.348) (-1669.870) [-1657.061] (-1676.018) -- 0:10:17
358000 -- (-1670.971) (-1659.648) [-1661.973] (-1674.615) * [-1669.002] (-1664.813) (-1674.224) (-1678.119) -- 0:10:16
359000 -- [-1660.952] (-1660.597) (-1667.880) (-1688.741) * (-1671.556) (-1661.818) (-1676.349) [-1668.631] -- 0:10:14
360000 -- (-1671.337) [-1656.497] (-1664.040) (-1678.562) * [-1667.235] (-1672.025) (-1684.205) (-1669.201) -- 0:10:13
Average standard deviation of split frequencies: 0.015859
361000 -- [-1664.321] (-1662.485) (-1663.828) (-1654.011) * (-1665.814) (-1665.461) (-1686.341) [-1661.647] -- 0:10:12
362000 -- [-1665.218] (-1667.921) (-1672.260) (-1671.010) * (-1669.210) (-1677.258) (-1664.610) [-1664.346] -- 0:10:09
363000 -- (-1668.611) (-1654.578) [-1660.317] (-1692.401) * (-1681.947) (-1661.796) (-1664.739) [-1664.399] -- 0:10:08
364000 -- [-1658.844] (-1668.863) (-1669.252) (-1683.873) * (-1676.088) (-1674.280) (-1661.082) [-1663.694] -- 0:10:08
365000 -- (-1676.419) [-1673.952] (-1667.337) (-1668.146) * [-1677.664] (-1675.827) (-1682.279) (-1669.773) -- 0:10:07
Average standard deviation of split frequencies: 0.015656
366000 -- (-1691.419) (-1662.421) (-1673.337) [-1655.857] * [-1670.501] (-1665.909) (-1676.212) (-1668.371) -- 0:10:04
367000 -- (-1671.865) [-1662.479] (-1673.950) (-1681.072) * (-1675.668) (-1685.260) (-1668.157) [-1664.408] -- 0:10:03
368000 -- (-1665.958) [-1660.247] (-1669.287) (-1664.394) * (-1666.103) [-1662.849] (-1686.082) (-1677.180) -- 0:10:02
369000 -- (-1681.069) (-1671.745) [-1664.124] (-1660.437) * [-1658.047] (-1677.063) (-1677.207) (-1665.958) -- 0:10:01
370000 -- (-1675.716) (-1680.354) [-1664.511] (-1670.845) * (-1661.213) (-1665.197) [-1665.948] (-1669.439) -- 0:09:59
Average standard deviation of split frequencies: 0.015572
371000 -- [-1661.567] (-1671.380) (-1674.739) (-1686.852) * [-1657.883] (-1670.221) (-1662.193) (-1680.550) -- 0:09:58
372000 -- [-1655.898] (-1680.929) (-1691.594) (-1675.061) * [-1669.811] (-1665.653) (-1673.608) (-1677.522) -- 0:09:57
373000 -- (-1682.084) (-1677.178) (-1663.922) [-1662.831] * [-1662.268] (-1661.494) (-1678.443) (-1674.865) -- 0:09:55
374000 -- (-1667.363) (-1660.130) (-1670.592) [-1663.768] * (-1667.767) (-1679.743) [-1672.170] (-1669.462) -- 0:09:54
375000 -- (-1688.554) [-1653.159] (-1687.779) (-1661.176) * (-1665.507) (-1677.517) [-1661.715] (-1663.964) -- 0:09:53
Average standard deviation of split frequencies: 0.015323
376000 -- (-1675.104) (-1675.839) [-1665.408] (-1671.095) * (-1662.941) (-1662.206) [-1654.820] (-1661.297) -- 0:09:52
377000 -- (-1663.625) (-1677.343) (-1688.472) [-1656.903] * (-1670.925) [-1668.213] (-1669.969) (-1662.791) -- 0:09:49
378000 -- (-1675.244) (-1678.653) (-1685.245) [-1665.020] * (-1669.084) (-1669.430) (-1669.447) [-1658.534] -- 0:09:49
379000 -- [-1657.587] (-1668.662) (-1677.841) (-1675.636) * (-1664.982) (-1664.525) (-1683.956) [-1663.544] -- 0:09:48
380000 -- (-1673.855) (-1678.594) [-1661.092] (-1664.703) * (-1668.642) (-1671.554) (-1676.150) [-1678.009] -- 0:09:45
Average standard deviation of split frequencies: 0.015191
381000 -- (-1670.052) (-1670.661) (-1676.953) [-1664.499] * (-1672.726) [-1669.311] (-1684.201) (-1675.128) -- 0:09:44
382000 -- (-1672.883) (-1668.831) [-1673.296] (-1676.356) * (-1670.816) [-1662.038] (-1691.778) (-1681.200) -- 0:09:44
383000 -- [-1656.647] (-1663.852) (-1688.667) (-1666.232) * (-1665.038) [-1659.691] (-1694.599) (-1669.835) -- 0:09:43
384000 -- (-1678.656) (-1656.026) [-1660.193] (-1660.728) * (-1660.967) [-1659.970] (-1667.985) (-1664.451) -- 0:09:40
385000 -- (-1685.116) [-1665.441] (-1657.660) (-1673.131) * (-1657.979) (-1660.141) (-1668.751) [-1658.068] -- 0:09:39
Average standard deviation of split frequencies: 0.014574
386000 -- (-1676.691) [-1662.984] (-1671.520) (-1662.974) * (-1670.138) (-1683.370) (-1666.132) [-1656.867] -- 0:09:39
387000 -- [-1671.417] (-1669.350) (-1666.394) (-1667.807) * (-1666.480) (-1675.564) (-1673.132) [-1655.377] -- 0:09:38
388000 -- [-1658.309] (-1665.420) (-1666.912) (-1677.495) * (-1671.787) (-1670.052) (-1663.700) [-1661.461] -- 0:09:35
389000 -- (-1669.606) (-1659.015) [-1669.154] (-1664.958) * (-1666.738) [-1655.781] (-1671.857) (-1664.095) -- 0:09:34
390000 -- (-1674.987) (-1663.289) (-1670.952) [-1654.106] * (-1671.619) [-1662.590] (-1690.837) (-1668.057) -- 0:09:34
Average standard deviation of split frequencies: 0.014292
391000 -- (-1676.624) (-1667.460) (-1680.077) [-1663.438] * (-1661.923) [-1662.947] (-1664.423) (-1676.828) -- 0:09:31
392000 -- (-1659.844) [-1664.493] (-1677.995) (-1675.507) * (-1667.514) [-1657.633] (-1662.088) (-1674.079) -- 0:09:30
393000 -- (-1665.887) (-1668.424) [-1656.170] (-1671.703) * [-1664.307] (-1662.407) (-1666.060) (-1665.511) -- 0:09:29
394000 -- (-1681.788) [-1674.626] (-1668.693) (-1672.087) * [-1670.975] (-1664.582) (-1668.588) (-1664.763) -- 0:09:29
395000 -- (-1670.426) (-1680.456) [-1668.269] (-1664.753) * (-1666.103) [-1662.247] (-1672.207) (-1680.777) -- 0:09:26
Average standard deviation of split frequencies: 0.013729
396000 -- (-1677.563) (-1666.673) [-1656.430] (-1678.354) * (-1679.631) [-1664.580] (-1667.992) (-1662.621) -- 0:09:25
397000 -- (-1670.607) (-1668.049) (-1658.352) [-1649.602] * (-1663.928) [-1656.290] (-1673.003) (-1674.221) -- 0:09:25
398000 -- (-1663.111) (-1673.685) (-1697.615) [-1663.857] * (-1665.466) [-1662.087] (-1671.573) (-1671.960) -- 0:09:22
399000 -- (-1666.043) (-1682.364) [-1662.219] (-1664.158) * [-1666.502] (-1676.186) (-1671.454) (-1667.846) -- 0:09:21
400000 -- (-1669.675) (-1674.929) (-1677.712) [-1656.996] * (-1663.652) (-1676.758) (-1659.696) [-1663.960] -- 0:09:21
Average standard deviation of split frequencies: 0.013726
401000 -- (-1678.346) (-1673.242) (-1687.106) [-1670.883] * (-1670.931) [-1656.326] (-1680.578) (-1667.104) -- 0:09:20
402000 -- (-1672.778) (-1661.937) (-1681.791) [-1659.848] * (-1671.833) (-1669.963) (-1673.866) [-1655.324] -- 0:09:17
403000 -- (-1662.342) [-1667.171] (-1674.944) (-1674.293) * (-1668.848) (-1666.076) (-1667.001) [-1668.610] -- 0:09:17
404000 -- (-1681.957) (-1665.484) (-1673.145) [-1664.983] * (-1671.164) (-1671.197) (-1678.966) [-1660.621] -- 0:09:16
405000 -- (-1678.302) (-1666.974) (-1669.185) [-1658.572] * (-1671.854) (-1656.324) [-1663.836] (-1671.975) -- 0:09:15
Average standard deviation of split frequencies: 0.013572
406000 -- [-1660.630] (-1670.026) (-1664.345) (-1672.298) * (-1666.523) (-1670.371) (-1677.632) [-1664.181] -- 0:09:13
407000 -- [-1665.496] (-1666.156) (-1670.574) (-1670.064) * (-1671.887) (-1658.804) (-1669.717) [-1659.954] -- 0:09:12
408000 -- [-1654.538] (-1677.911) (-1661.549) (-1674.564) * (-1663.217) [-1664.565] (-1671.757) (-1671.050) -- 0:09:11
409000 -- [-1656.227] (-1676.395) (-1669.464) (-1668.513) * (-1676.974) (-1676.270) [-1655.303] (-1666.347) -- 0:09:09
410000 -- (-1672.542) (-1664.277) [-1656.174] (-1667.414) * (-1669.856) (-1696.419) (-1660.796) [-1667.356] -- 0:09:08
Average standard deviation of split frequencies: 0.013137
411000 -- (-1679.979) (-1677.201) [-1652.034] (-1662.273) * (-1675.446) (-1666.814) (-1680.505) [-1660.114] -- 0:09:07
412000 -- (-1671.272) (-1681.770) [-1672.048] (-1661.129) * [-1653.655] (-1670.309) (-1670.011) (-1673.164) -- 0:09:06
413000 -- (-1670.243) (-1690.093) [-1661.302] (-1688.515) * (-1663.396) (-1679.353) (-1676.511) [-1664.546] -- 0:09:04
414000 -- (-1676.293) (-1696.475) (-1660.117) [-1654.947] * (-1665.908) [-1670.938] (-1669.304) (-1663.450) -- 0:09:03
415000 -- [-1673.924] (-1665.324) (-1680.280) (-1658.831) * (-1674.974) [-1670.366] (-1669.896) (-1671.058) -- 0:09:02
Average standard deviation of split frequencies: 0.012918
416000 -- [-1661.918] (-1667.793) (-1669.222) (-1683.289) * (-1657.566) (-1663.506) (-1683.317) [-1666.734] -- 0:09:00
417000 -- (-1666.278) (-1662.329) [-1663.888] (-1661.399) * (-1669.490) [-1660.299] (-1689.642) (-1663.614) -- 0:08:59
418000 -- [-1667.118] (-1681.403) (-1663.656) (-1681.586) * (-1676.504) [-1666.941] (-1671.865) (-1664.938) -- 0:08:58
419000 -- (-1659.446) [-1668.355] (-1664.676) (-1671.838) * (-1676.058) (-1665.833) (-1675.907) [-1661.514] -- 0:08:58
420000 -- (-1666.069) (-1666.164) [-1656.243] (-1667.737) * (-1680.740) [-1668.160] (-1665.301) (-1672.646) -- 0:08:55
Average standard deviation of split frequencies: 0.012974
421000 -- (-1657.645) (-1686.857) [-1657.051] (-1675.320) * (-1671.945) (-1672.337) [-1665.307] (-1682.180) -- 0:08:54
422000 -- [-1660.039] (-1679.124) (-1671.531) (-1675.161) * [-1655.515] (-1681.740) (-1671.835) (-1671.360) -- 0:08:54
423000 -- (-1661.718) (-1669.285) [-1658.371] (-1682.609) * (-1666.416) (-1668.183) [-1669.496] (-1680.048) -- 0:08:53
424000 -- (-1662.895) (-1670.682) [-1657.534] (-1675.763) * (-1668.314) [-1663.124] (-1672.782) (-1685.203) -- 0:08:51
425000 -- [-1665.904] (-1666.074) (-1683.774) (-1664.477) * [-1664.842] (-1675.954) (-1669.018) (-1664.316) -- 0:08:50
Average standard deviation of split frequencies: 0.012640
426000 -- (-1665.154) (-1680.500) [-1667.162] (-1658.285) * [-1669.064] (-1668.744) (-1663.876) (-1661.960) -- 0:08:49
427000 -- (-1670.433) (-1685.458) (-1670.396) [-1656.240] * (-1680.451) [-1680.412] (-1656.723) (-1679.347) -- 0:08:47
428000 -- (-1665.011) [-1669.755] (-1669.108) (-1677.045) * (-1671.342) [-1668.997] (-1667.225) (-1689.231) -- 0:08:46
429000 -- (-1684.788) (-1671.230) (-1658.475) [-1668.731] * (-1675.447) (-1662.975) (-1667.935) [-1669.092] -- 0:08:45
430000 -- (-1664.468) [-1670.501] (-1658.207) (-1677.631) * (-1658.747) [-1664.210] (-1665.157) (-1674.032) -- 0:08:44
Average standard deviation of split frequencies: 0.012965
431000 -- (-1653.588) (-1672.962) [-1654.627] (-1665.529) * [-1660.953] (-1679.581) (-1666.266) (-1671.214) -- 0:08:42
432000 -- [-1666.986] (-1661.770) (-1658.743) (-1668.755) * (-1669.087) (-1680.832) (-1668.165) [-1658.995] -- 0:08:41
433000 -- (-1675.361) (-1668.469) [-1656.970] (-1678.351) * [-1666.500] (-1683.200) (-1687.722) (-1674.518) -- 0:08:41
434000 -- [-1666.947] (-1681.319) (-1655.710) (-1673.575) * (-1672.269) (-1676.065) [-1664.788] (-1687.009) -- 0:08:39
435000 -- (-1672.080) (-1670.064) (-1663.974) [-1668.039] * (-1678.119) (-1669.738) (-1683.560) [-1674.179] -- 0:08:38
Average standard deviation of split frequencies: 0.012758
436000 -- (-1668.732) (-1670.417) (-1664.179) [-1672.113] * [-1653.386] (-1675.388) (-1682.063) (-1676.474) -- 0:08:37
437000 -- (-1681.836) (-1665.446) [-1657.591] (-1657.298) * [-1658.128] (-1666.294) (-1686.452) (-1675.740) -- 0:08:36
438000 -- (-1668.040) (-1662.873) (-1666.315) [-1659.614] * [-1667.903] (-1681.295) (-1680.759) (-1667.737) -- 0:08:34
439000 -- (-1683.772) (-1669.706) (-1669.975) [-1659.336] * [-1660.604] (-1665.270) (-1662.123) (-1677.070) -- 0:08:33
440000 -- (-1671.233) (-1678.366) [-1659.053] (-1674.354) * (-1660.748) (-1669.799) (-1672.674) [-1657.055] -- 0:08:32
Average standard deviation of split frequencies: 0.012742
441000 -- (-1682.177) (-1661.993) [-1659.692] (-1669.485) * (-1670.963) (-1671.125) [-1665.422] (-1672.475) -- 0:08:30
442000 -- (-1664.047) (-1670.517) (-1668.296) [-1662.113] * [-1673.868] (-1670.746) (-1664.389) (-1681.559) -- 0:08:30
443000 -- (-1665.687) (-1673.068) [-1665.978] (-1662.734) * (-1666.272) (-1661.321) (-1665.047) [-1670.021] -- 0:08:29
444000 -- (-1662.419) (-1668.332) (-1693.509) [-1656.463] * [-1675.439] (-1670.474) (-1665.732) (-1668.261) -- 0:08:28
445000 -- [-1652.926] (-1671.094) (-1678.932) (-1678.974) * (-1676.392) (-1668.521) (-1676.863) [-1663.642] -- 0:08:26
Average standard deviation of split frequencies: 0.012496
446000 -- (-1663.542) [-1653.264] (-1677.469) (-1666.833) * (-1671.572) [-1654.998] (-1671.863) (-1687.387) -- 0:08:25
447000 -- (-1659.250) (-1665.778) [-1678.476] (-1664.760) * [-1660.241] (-1672.919) (-1662.386) (-1669.479) -- 0:08:24
448000 -- (-1664.532) (-1667.201) [-1665.344] (-1675.896) * (-1662.566) (-1674.776) (-1663.666) [-1663.476] -- 0:08:22
449000 -- [-1657.892] (-1665.207) (-1665.269) (-1668.883) * (-1665.074) [-1662.555] (-1675.641) (-1664.536) -- 0:08:21
450000 -- [-1656.347] (-1645.993) (-1670.988) (-1687.424) * (-1659.249) [-1667.119] (-1678.736) (-1659.621) -- 0:08:21
Average standard deviation of split frequencies: 0.012157
451000 -- [-1659.513] (-1669.599) (-1668.779) (-1672.576) * (-1664.213) [-1664.561] (-1657.115) (-1676.830) -- 0:08:20
452000 -- (-1664.119) (-1682.814) (-1658.233) [-1658.575] * (-1694.139) (-1671.451) (-1657.070) [-1664.989] -- 0:08:18
453000 -- (-1675.149) (-1669.688) (-1665.994) [-1657.293] * (-1683.568) (-1679.615) [-1661.635] (-1678.713) -- 0:08:17
454000 -- (-1666.359) (-1664.600) [-1668.468] (-1667.297) * (-1689.934) (-1682.260) [-1663.481] (-1668.688) -- 0:08:16
455000 -- (-1667.679) (-1683.499) [-1666.187] (-1670.351) * (-1681.317) (-1664.294) [-1661.649] (-1674.464) -- 0:08:14
Average standard deviation of split frequencies: 0.011831
456000 -- (-1671.862) (-1660.940) [-1664.935] (-1681.195) * (-1653.279) [-1666.909] (-1671.049) (-1678.429) -- 0:08:13
457000 -- (-1669.217) [-1674.692] (-1654.313) (-1680.752) * (-1668.358) [-1674.913] (-1676.335) (-1672.306) -- 0:08:13
458000 -- (-1673.974) (-1684.138) (-1678.959) [-1663.733] * (-1663.024) (-1687.848) [-1668.822] (-1668.776) -- 0:08:11
459000 -- (-1670.703) [-1660.008] (-1689.994) (-1671.014) * (-1678.370) (-1668.099) (-1664.373) [-1660.612] -- 0:08:10
460000 -- (-1668.093) [-1663.240] (-1682.579) (-1676.285) * [-1658.948] (-1668.995) (-1671.390) (-1679.270) -- 0:08:09
Average standard deviation of split frequencies: 0.012075
461000 -- (-1668.583) [-1661.722] (-1670.580) (-1656.901) * (-1663.549) (-1663.411) (-1671.043) [-1662.442] -- 0:08:07
462000 -- (-1665.851) (-1680.028) (-1659.320) [-1660.950] * (-1663.569) (-1665.361) (-1671.730) [-1664.026] -- 0:08:06
463000 -- [-1660.966] (-1670.777) (-1667.298) (-1681.478) * (-1668.374) (-1674.998) [-1679.819] (-1668.583) -- 0:08:05
464000 -- [-1665.566] (-1676.874) (-1689.011) (-1672.294) * (-1662.719) (-1667.628) [-1666.419] (-1676.955) -- 0:08:05
465000 -- [-1661.181] (-1664.086) (-1673.088) (-1660.939) * (-1664.906) (-1670.437) (-1676.743) [-1665.036] -- 0:08:03
Average standard deviation of split frequencies: 0.011869
466000 -- [-1672.169] (-1667.555) (-1668.429) (-1663.319) * [-1656.848] (-1677.172) (-1672.524) (-1664.301) -- 0:08:02
467000 -- [-1677.895] (-1663.540) (-1666.253) (-1671.998) * [-1655.869] (-1664.078) (-1676.016) (-1672.232) -- 0:08:01
468000 -- [-1675.313] (-1672.636) (-1669.604) (-1669.811) * [-1663.221] (-1688.784) (-1665.944) (-1667.902) -- 0:07:59
469000 -- (-1671.302) [-1662.565] (-1673.893) (-1666.277) * (-1673.503) (-1662.967) (-1666.753) [-1665.202] -- 0:07:58
470000 -- [-1658.811] (-1676.083) (-1667.431) (-1664.203) * [-1668.814] (-1675.646) (-1674.142) (-1665.699) -- 0:07:58
Average standard deviation of split frequencies: 0.011796
471000 -- (-1669.297) [-1663.512] (-1671.021) (-1678.748) * (-1671.931) (-1685.300) [-1667.087] (-1670.596) -- 0:07:56
472000 -- (-1670.518) (-1667.743) [-1668.112] (-1679.765) * (-1689.591) [-1671.884] (-1665.417) (-1673.196) -- 0:07:55
473000 -- (-1660.575) [-1661.472] (-1667.904) (-1675.625) * (-1687.980) (-1666.379) [-1665.533] (-1670.948) -- 0:07:54
474000 -- (-1680.931) (-1675.971) [-1664.242] (-1673.559) * (-1665.418) (-1663.108) [-1662.321] (-1662.474) -- 0:07:53
475000 -- (-1663.759) (-1683.062) (-1674.060) [-1660.014] * (-1673.006) [-1667.169] (-1669.805) (-1663.219) -- 0:07:51
Average standard deviation of split frequencies: 0.011070
476000 -- (-1694.080) [-1671.872] (-1662.869) (-1667.765) * (-1690.354) (-1673.255) (-1659.718) [-1650.111] -- 0:07:51
477000 -- (-1678.529) (-1663.462) [-1653.824] (-1672.184) * (-1707.564) (-1666.376) (-1680.598) [-1659.372] -- 0:07:50
478000 -- (-1682.210) [-1665.553] (-1658.234) (-1663.800) * (-1686.635) (-1654.533) (-1671.979) [-1660.162] -- 0:07:48
479000 -- (-1681.328) (-1667.889) (-1665.577) [-1661.730] * (-1671.523) (-1667.359) (-1668.389) [-1661.967] -- 0:07:47
480000 -- (-1675.780) (-1660.523) (-1680.760) [-1660.665] * [-1660.047] (-1669.326) (-1675.843) (-1665.090) -- 0:07:46
Average standard deviation of split frequencies: 0.010178
481000 -- (-1680.453) (-1668.216) (-1656.219) [-1658.704] * (-1664.661) (-1675.453) [-1667.773] (-1676.153) -- 0:07:46
482000 -- (-1668.107) (-1676.712) [-1664.707] (-1673.654) * [-1664.241] (-1687.868) (-1660.304) (-1691.296) -- 0:07:44
483000 -- (-1661.030) (-1686.708) [-1662.116] (-1668.401) * (-1667.396) (-1668.265) (-1684.535) [-1675.131] -- 0:07:43
484000 -- (-1672.889) [-1667.794] (-1666.714) (-1685.120) * (-1676.419) (-1662.956) [-1658.024] (-1665.249) -- 0:07:42
485000 -- [-1665.782] (-1671.976) (-1669.823) (-1672.078) * (-1666.387) (-1660.396) [-1658.056] (-1673.027) -- 0:07:40
Average standard deviation of split frequencies: 0.009613
486000 -- (-1681.486) [-1665.945] (-1671.329) (-1665.346) * (-1673.831) [-1661.095] (-1675.725) (-1676.958) -- 0:07:40
487000 -- (-1668.642) [-1661.592] (-1675.736) (-1659.951) * (-1660.886) (-1669.956) [-1668.910] (-1683.958) -- 0:07:39
488000 -- (-1663.190) [-1663.758] (-1672.076) (-1666.061) * [-1662.119] (-1688.706) (-1675.264) (-1662.314) -- 0:07:38
489000 -- [-1668.814] (-1662.933) (-1682.545) (-1667.487) * (-1674.247) (-1683.622) [-1660.669] (-1673.580) -- 0:07:36
490000 -- [-1662.952] (-1665.608) (-1672.072) (-1672.628) * (-1683.648) (-1685.511) (-1660.230) [-1664.852] -- 0:07:35
Average standard deviation of split frequencies: 0.009970
491000 -- (-1661.262) [-1663.604] (-1667.377) (-1676.423) * (-1685.325) (-1684.074) [-1675.119] (-1661.720) -- 0:07:35
492000 -- (-1669.361) (-1662.802) [-1661.856] (-1683.705) * (-1682.349) [-1673.076] (-1677.305) (-1668.726) -- 0:07:33
493000 -- (-1681.162) (-1658.720) [-1666.651] (-1667.938) * (-1677.824) (-1671.580) (-1669.855) [-1667.709] -- 0:07:32
494000 -- (-1677.043) (-1683.214) [-1659.792] (-1663.713) * (-1666.176) [-1654.240] (-1673.034) (-1673.444) -- 0:07:31
495000 -- [-1655.062] (-1668.909) (-1660.268) (-1672.610) * (-1658.374) (-1669.002) [-1663.429] (-1677.369) -- 0:07:30
Average standard deviation of split frequencies: 0.009948
496000 -- [-1664.695] (-1672.740) (-1654.819) (-1672.928) * (-1665.648) (-1678.068) [-1662.584] (-1668.730) -- 0:07:29
497000 -- [-1668.582] (-1689.620) (-1665.310) (-1675.330) * (-1675.609) (-1679.111) [-1662.926] (-1680.230) -- 0:07:28
498000 -- [-1655.172] (-1683.291) (-1660.868) (-1676.105) * (-1665.571) (-1701.355) [-1668.394] (-1674.776) -- 0:07:27
499000 -- (-1666.210) (-1675.081) [-1667.213] (-1675.852) * (-1666.309) (-1676.422) [-1662.488] (-1683.547) -- 0:07:25
500000 -- [-1676.234] (-1666.541) (-1668.518) (-1674.371) * (-1670.149) (-1675.032) [-1665.485] (-1682.219) -- 0:07:25
Average standard deviation of split frequencies: 0.009688
501000 -- (-1671.314) (-1670.802) (-1675.445) [-1668.767] * (-1674.105) [-1663.439] (-1675.094) (-1661.224) -- 0:07:24
502000 -- (-1673.438) (-1664.868) (-1665.531) [-1658.202] * (-1662.576) (-1666.540) [-1671.610] (-1667.533) -- 0:07:23
503000 -- (-1669.327) (-1667.164) [-1661.591] (-1671.352) * (-1678.354) (-1662.595) (-1672.272) [-1655.778] -- 0:07:21
504000 -- (-1676.941) [-1651.215] (-1667.339) (-1667.816) * [-1658.996] (-1663.578) (-1667.719) (-1673.233) -- 0:07:20
505000 -- (-1681.442) [-1660.666] (-1668.392) (-1685.035) * [-1660.746] (-1673.682) (-1676.107) (-1678.101) -- 0:07:20
Average standard deviation of split frequencies: 0.009316
506000 -- (-1680.441) [-1662.965] (-1660.615) (-1670.627) * (-1667.491) (-1674.360) (-1675.418) [-1668.563] -- 0:07:19
507000 -- (-1669.174) (-1671.543) [-1652.245] (-1673.898) * (-1665.309) (-1677.781) [-1661.582] (-1679.850) -- 0:07:17
508000 -- (-1668.547) (-1675.526) [-1662.216] (-1666.612) * [-1681.823] (-1659.869) (-1671.352) (-1690.328) -- 0:07:16
509000 -- (-1671.539) (-1663.471) (-1664.578) [-1667.825] * [-1669.168] (-1663.287) (-1671.954) (-1672.480) -- 0:07:16
510000 -- (-1673.278) (-1662.181) [-1663.896] (-1676.070) * (-1662.498) (-1667.426) [-1668.592] (-1679.800) -- 0:07:15
Average standard deviation of split frequencies: 0.009559
511000 -- (-1665.065) (-1665.741) [-1661.403] (-1666.804) * (-1672.434) (-1666.930) (-1668.342) [-1663.009] -- 0:07:13
512000 -- (-1673.350) [-1660.734] (-1679.319) (-1670.155) * [-1663.324] (-1663.442) (-1680.253) (-1680.603) -- 0:07:12
513000 -- (-1669.934) (-1664.888) [-1656.324] (-1676.693) * [-1663.535] (-1666.802) (-1673.829) (-1656.332) -- 0:07:11
514000 -- (-1668.420) (-1656.491) (-1677.597) [-1665.107] * (-1660.780) [-1661.529] (-1671.829) (-1658.440) -- 0:07:10
515000 -- (-1680.251) [-1664.126] (-1668.542) (-1670.337) * (-1688.453) (-1667.803) (-1672.067) [-1663.989] -- 0:07:09
Average standard deviation of split frequencies: 0.009603
516000 -- (-1674.828) (-1681.987) [-1665.313] (-1671.742) * (-1677.118) (-1671.352) (-1652.041) [-1662.130] -- 0:07:08
517000 -- (-1666.557) (-1681.019) [-1668.153] (-1676.907) * (-1669.871) [-1663.647] (-1664.727) (-1667.480) -- 0:07:07
518000 -- (-1673.604) (-1667.815) (-1670.865) [-1663.593] * (-1686.311) (-1672.950) [-1666.673] (-1678.357) -- 0:07:06
519000 -- (-1683.339) (-1676.565) [-1666.771] (-1678.777) * (-1673.972) (-1684.458) [-1659.725] (-1671.313) -- 0:07:05
520000 -- (-1665.927) (-1675.871) (-1670.137) [-1654.272] * (-1675.532) (-1667.482) [-1664.756] (-1675.289) -- 0:07:04
Average standard deviation of split frequencies: 0.009456
521000 -- (-1670.726) (-1669.662) (-1670.700) [-1657.342] * (-1673.412) (-1668.589) [-1661.595] (-1676.394) -- 0:07:02
522000 -- [-1660.105] (-1666.990) (-1670.410) (-1671.107) * (-1666.593) [-1660.127] (-1677.191) (-1689.076) -- 0:07:02
523000 -- (-1666.750) [-1669.702] (-1667.368) (-1670.141) * [-1669.444] (-1666.347) (-1676.318) (-1671.587) -- 0:07:01
524000 -- (-1668.454) [-1656.391] (-1677.172) (-1672.555) * (-1667.613) (-1669.350) (-1679.809) [-1652.815] -- 0:07:00
525000 -- (-1674.773) [-1664.036] (-1670.905) (-1675.820) * (-1658.366) (-1666.263) (-1672.343) [-1667.445] -- 0:06:58
Average standard deviation of split frequencies: 0.009101
526000 -- (-1668.043) [-1666.244] (-1673.608) (-1666.663) * [-1659.938] (-1663.946) (-1672.204) (-1678.204) -- 0:06:58
527000 -- [-1661.977] (-1669.197) (-1667.033) (-1665.814) * (-1662.143) (-1673.251) [-1661.297] (-1674.819) -- 0:06:57
528000 -- (-1688.004) (-1670.131) [-1663.799] (-1663.458) * [-1667.127] (-1687.864) (-1663.942) (-1668.011) -- 0:06:55
529000 -- (-1672.331) (-1681.334) (-1671.368) [-1658.677] * (-1679.762) [-1668.315] (-1658.912) (-1673.550) -- 0:06:54
530000 -- [-1668.356] (-1687.010) (-1685.311) (-1668.381) * [-1660.176] (-1664.743) (-1662.468) (-1677.179) -- 0:06:54
Average standard deviation of split frequencies: 0.008962
531000 -- [-1657.980] (-1671.429) (-1690.968) (-1679.815) * (-1672.865) (-1669.665) [-1661.839] (-1673.402) -- 0:06:53
532000 -- (-1667.038) [-1667.332] (-1661.596) (-1682.713) * [-1665.809] (-1673.350) (-1666.013) (-1666.704) -- 0:06:51
533000 -- (-1671.030) [-1663.195] (-1669.355) (-1670.986) * (-1670.213) [-1663.448] (-1670.256) (-1662.752) -- 0:06:50
534000 -- (-1680.882) (-1669.511) [-1666.704] (-1665.300) * (-1671.297) (-1673.948) [-1658.692] (-1660.752) -- 0:06:50
535000 -- (-1692.833) [-1665.997] (-1672.350) (-1669.708) * (-1668.417) (-1665.631) (-1658.949) [-1663.045] -- 0:06:49
Average standard deviation of split frequencies: 0.009205
536000 -- [-1660.981] (-1666.603) (-1669.470) (-1666.422) * (-1674.471) (-1666.207) (-1679.951) [-1664.528] -- 0:06:47
537000 -- (-1672.163) (-1667.017) (-1659.764) [-1664.691] * (-1668.948) (-1674.140) (-1669.755) [-1664.265] -- 0:06:46
538000 -- (-1677.383) [-1670.265] (-1670.211) (-1668.318) * (-1677.578) (-1665.848) [-1665.315] (-1688.957) -- 0:06:46
539000 -- [-1664.516] (-1673.288) (-1676.050) (-1675.698) * (-1667.086) [-1666.723] (-1673.051) (-1685.795) -- 0:06:44
540000 -- (-1676.297) (-1681.368) [-1658.285] (-1673.133) * [-1669.779] (-1677.875) (-1663.647) (-1678.278) -- 0:06:43
Average standard deviation of split frequencies: 0.008990
541000 -- [-1663.418] (-1673.886) (-1668.191) (-1690.840) * (-1667.113) (-1670.488) (-1672.183) [-1662.120] -- 0:06:43
542000 -- (-1685.120) (-1663.731) (-1684.771) [-1675.377] * (-1661.882) (-1674.902) (-1671.317) [-1655.373] -- 0:06:42
543000 -- (-1686.183) [-1663.557] (-1676.117) (-1673.913) * (-1667.683) [-1656.311] (-1673.135) (-1670.064) -- 0:06:40
544000 -- (-1660.115) (-1664.673) (-1683.187) [-1663.108] * (-1677.613) [-1661.414] (-1662.941) (-1664.614) -- 0:06:39
545000 -- (-1667.341) (-1675.705) (-1668.841) [-1663.955] * (-1663.054) (-1661.507) (-1673.326) [-1671.442] -- 0:06:39
Average standard deviation of split frequencies: 0.009056
546000 -- (-1663.643) [-1674.248] (-1685.036) (-1655.742) * (-1672.247) (-1684.383) [-1663.902] (-1668.212) -- 0:06:37
547000 -- [-1660.947] (-1665.246) (-1674.409) (-1665.655) * (-1667.336) (-1675.020) [-1669.143] (-1667.585) -- 0:06:36
548000 -- (-1663.390) (-1664.499) (-1681.990) [-1666.199] * (-1677.327) (-1673.452) (-1673.042) [-1661.971] -- 0:06:35
549000 -- [-1663.431] (-1672.644) (-1693.524) (-1661.923) * (-1664.916) (-1669.558) (-1680.960) [-1667.746] -- 0:06:35
550000 -- (-1670.393) [-1670.130] (-1681.814) (-1662.761) * [-1659.995] (-1668.689) (-1666.359) (-1666.875) -- 0:06:33
Average standard deviation of split frequencies: 0.008998
551000 -- [-1666.094] (-1685.342) (-1682.290) (-1671.634) * (-1665.156) (-1675.383) (-1669.058) [-1660.149] -- 0:06:32
552000 -- (-1668.701) (-1671.237) [-1673.436] (-1663.620) * (-1670.287) (-1673.905) [-1678.805] (-1660.378) -- 0:06:32
553000 -- (-1671.732) (-1669.601) (-1680.074) [-1664.759] * (-1663.350) (-1664.305) (-1680.754) [-1665.641] -- 0:06:30
554000 -- (-1676.094) (-1673.331) (-1668.956) [-1661.336] * (-1664.333) [-1662.798] (-1671.963) (-1672.464) -- 0:06:29
555000 -- (-1681.857) (-1660.175) [-1665.701] (-1662.431) * (-1674.913) [-1665.232] (-1681.085) (-1680.861) -- 0:06:28
Average standard deviation of split frequencies: 0.008968
556000 -- [-1658.977] (-1686.737) (-1669.767) (-1668.232) * [-1662.222] (-1668.716) (-1659.942) (-1674.886) -- 0:06:28
557000 -- [-1662.918] (-1675.547) (-1663.673) (-1670.319) * (-1687.831) (-1670.210) [-1666.489] (-1668.720) -- 0:06:26
558000 -- [-1651.444] (-1690.245) (-1668.554) (-1671.419) * (-1678.305) (-1660.654) [-1666.328] (-1682.312) -- 0:06:25
559000 -- (-1664.511) (-1669.821) (-1671.683) [-1664.092] * [-1661.800] (-1681.310) (-1664.281) (-1684.848) -- 0:06:24
560000 -- (-1672.436) [-1662.786] (-1679.875) (-1670.524) * (-1664.783) (-1677.269) (-1670.388) [-1683.528] -- 0:06:23
Average standard deviation of split frequencies: 0.009043
561000 -- (-1672.519) [-1654.409] (-1669.593) (-1665.753) * [-1659.408] (-1673.751) (-1672.376) (-1661.947) -- 0:06:22
562000 -- (-1669.606) (-1661.474) [-1658.401] (-1671.192) * (-1667.982) (-1669.902) (-1682.844) [-1664.664] -- 0:06:21
563000 -- (-1664.814) (-1660.306) [-1666.156] (-1679.955) * (-1680.764) (-1669.649) (-1669.952) [-1665.095] -- 0:06:21
564000 -- (-1667.403) (-1652.878) (-1676.671) [-1664.899] * (-1665.967) [-1665.813] (-1689.795) (-1666.370) -- 0:06:19
565000 -- (-1655.770) (-1660.203) (-1687.694) [-1660.294] * (-1662.245) [-1674.403] (-1684.050) (-1665.435) -- 0:06:18
Average standard deviation of split frequencies: 0.009051
566000 -- (-1660.577) (-1674.494) [-1665.701] (-1666.169) * (-1667.093) (-1677.084) (-1661.841) [-1669.595] -- 0:06:18
567000 -- (-1661.832) [-1669.173] (-1689.884) (-1665.687) * (-1669.840) [-1660.627] (-1679.142) (-1679.909) -- 0:06:16
568000 -- [-1659.227] (-1665.654) (-1670.935) (-1668.922) * (-1679.307) (-1667.814) (-1676.365) [-1660.867] -- 0:06:15
569000 -- [-1667.280] (-1661.160) (-1671.528) (-1670.700) * (-1655.362) [-1664.848] (-1684.434) (-1675.525) -- 0:06:14
570000 -- (-1677.031) (-1666.492) [-1660.782] (-1663.521) * (-1675.476) (-1661.454) [-1677.016] (-1672.110) -- 0:06:14
Average standard deviation of split frequencies: 0.009307
571000 -- (-1674.227) (-1688.714) (-1656.064) [-1655.191] * (-1661.578) (-1674.002) [-1661.485] (-1666.072) -- 0:06:12
572000 -- (-1673.547) (-1673.970) [-1664.593] (-1681.381) * (-1667.868) (-1663.078) [-1657.178] (-1676.354) -- 0:06:11
573000 -- (-1688.140) [-1664.658] (-1672.251) (-1685.512) * (-1671.222) (-1675.962) [-1664.110] (-1662.590) -- 0:06:11
574000 -- [-1670.896] (-1680.224) (-1657.768) (-1682.472) * [-1664.731] (-1659.340) (-1665.509) (-1680.810) -- 0:06:09
575000 -- (-1669.412) (-1678.866) [-1654.816] (-1667.620) * (-1679.955) (-1670.297) (-1666.289) [-1665.163] -- 0:06:08
Average standard deviation of split frequencies: 0.008875
576000 -- [-1681.163] (-1679.098) (-1666.720) (-1677.444) * (-1677.223) (-1673.686) (-1670.280) [-1662.237] -- 0:06:08
577000 -- [-1666.441] (-1659.013) (-1663.351) (-1676.960) * (-1662.839) (-1663.905) [-1675.123] (-1663.523) -- 0:06:07
578000 -- (-1674.760) (-1671.170) [-1656.986] (-1678.503) * (-1673.072) [-1666.881] (-1665.249) (-1671.820) -- 0:06:05
579000 -- (-1687.235) (-1661.975) [-1661.239] (-1682.071) * (-1676.814) [-1671.172] (-1677.463) (-1668.180) -- 0:06:05
580000 -- (-1671.669) (-1659.243) [-1671.361] (-1667.511) * (-1673.744) [-1668.273] (-1672.385) (-1659.809) -- 0:06:04
Average standard deviation of split frequencies: 0.008587
581000 -- (-1672.889) (-1666.397) [-1658.600] (-1670.208) * [-1661.056] (-1668.085) (-1675.131) (-1673.692) -- 0:06:02
582000 -- [-1663.367] (-1666.782) (-1668.278) (-1665.887) * (-1692.928) (-1669.257) [-1660.560] (-1681.803) -- 0:06:01
583000 -- (-1660.342) (-1666.655) [-1661.812] (-1664.639) * (-1685.952) [-1664.298] (-1669.922) (-1667.695) -- 0:06:01
584000 -- (-1670.525) [-1661.203] (-1674.043) (-1671.990) * (-1668.953) [-1663.632] (-1675.612) (-1669.537) -- 0:05:59
585000 -- (-1681.129) (-1664.791) (-1677.492) [-1663.681] * (-1666.685) (-1669.204) (-1658.393) [-1680.088] -- 0:05:58
Average standard deviation of split frequencies: 0.008062
586000 -- (-1675.985) (-1671.785) [-1661.639] (-1670.627) * [-1666.448] (-1663.419) (-1683.010) (-1681.525) -- 0:05:58
587000 -- (-1664.856) (-1677.948) (-1675.023) [-1660.644] * (-1667.793) (-1669.033) [-1679.279] (-1684.976) -- 0:05:57
588000 -- (-1682.341) (-1666.689) (-1676.507) [-1661.828] * (-1669.680) [-1664.245] (-1684.702) (-1679.625) -- 0:05:55
589000 -- (-1669.121) (-1659.570) [-1655.074] (-1686.794) * (-1663.982) [-1671.534] (-1676.885) (-1674.570) -- 0:05:55
590000 -- (-1672.685) (-1676.359) (-1663.308) [-1663.609] * (-1675.361) [-1655.166] (-1670.877) (-1660.449) -- 0:05:54
Average standard deviation of split frequencies: 0.007520
591000 -- (-1667.162) [-1669.604] (-1659.663) (-1662.757) * (-1675.827) (-1673.629) [-1666.139] (-1665.206) -- 0:05:52
592000 -- (-1677.390) (-1678.449) (-1653.516) [-1660.218] * (-1684.104) (-1660.326) (-1670.944) [-1658.988] -- 0:05:52
593000 -- (-1685.229) [-1659.548] (-1672.075) (-1677.296) * [-1666.574] (-1675.736) (-1674.471) (-1674.603) -- 0:05:51
594000 -- (-1662.971) [-1658.641] (-1658.380) (-1678.908) * (-1668.463) (-1680.914) (-1678.396) [-1673.705] -- 0:05:49
595000 -- (-1672.683) (-1671.909) [-1659.117] (-1673.830) * (-1675.565) [-1663.621] (-1668.673) (-1690.538) -- 0:05:49
Average standard deviation of split frequencies: 0.007505
596000 -- (-1674.460) (-1663.227) (-1677.862) [-1657.650] * (-1683.077) [-1670.157] (-1661.091) (-1673.521) -- 0:05:48
597000 -- (-1666.481) (-1665.067) (-1674.460) [-1668.566] * [-1673.395] (-1657.872) (-1674.894) (-1667.277) -- 0:05:47
598000 -- [-1665.676] (-1677.458) (-1666.040) (-1661.657) * [-1672.623] (-1676.536) (-1673.986) (-1670.520) -- 0:05:46
599000 -- (-1670.501) [-1675.165] (-1674.964) (-1680.490) * (-1667.600) [-1665.552] (-1683.242) (-1666.403) -- 0:05:45
600000 -- (-1667.260) [-1667.057] (-1669.131) (-1672.870) * (-1672.881) (-1666.145) [-1659.960] (-1683.686) -- 0:05:44
Average standard deviation of split frequencies: 0.007238
601000 -- [-1656.819] (-1670.500) (-1666.458) (-1673.191) * [-1677.484] (-1668.755) (-1681.513) (-1677.249) -- 0:05:43
602000 -- (-1667.085) (-1666.704) (-1672.611) [-1668.967] * (-1665.170) (-1666.560) [-1674.088] (-1674.856) -- 0:05:42
603000 -- [-1664.353] (-1666.037) (-1666.260) (-1671.175) * [-1665.148] (-1662.086) (-1662.805) (-1691.959) -- 0:05:41
604000 -- (-1663.912) [-1667.249] (-1666.281) (-1670.146) * [-1659.915] (-1669.900) (-1671.432) (-1676.193) -- 0:05:40
605000 -- (-1661.354) (-1670.767) (-1672.741) [-1656.716] * [-1655.922] (-1674.657) (-1699.507) (-1669.997) -- 0:05:39
Average standard deviation of split frequencies: 0.006811
606000 -- [-1657.407] (-1664.229) (-1686.237) (-1660.964) * [-1670.706] (-1671.663) (-1666.978) (-1665.024) -- 0:05:38
607000 -- (-1662.911) [-1657.367] (-1665.833) (-1668.693) * (-1667.508) (-1669.717) (-1669.300) [-1655.049] -- 0:05:37
608000 -- (-1677.141) (-1659.928) (-1669.838) [-1664.097] * (-1659.540) [-1661.277] (-1684.905) (-1675.673) -- 0:05:36
609000 -- [-1660.416] (-1662.823) (-1669.930) (-1658.902) * (-1677.951) (-1665.518) [-1658.599] (-1674.618) -- 0:05:35
610000 -- (-1666.422) [-1669.943] (-1659.023) (-1675.444) * (-1665.420) [-1658.871] (-1665.273) (-1671.127) -- 0:05:35
Average standard deviation of split frequencies: 0.006930
611000 -- (-1666.441) (-1669.647) [-1658.630] (-1666.895) * (-1677.949) (-1668.777) [-1659.265] (-1673.611) -- 0:05:34
612000 -- [-1660.787] (-1652.858) (-1672.550) (-1661.328) * (-1668.901) (-1662.109) (-1673.143) [-1674.298] -- 0:05:32
613000 -- (-1669.768) (-1676.421) (-1682.384) [-1652.049] * (-1670.111) (-1667.440) (-1673.667) [-1668.508] -- 0:05:32
614000 -- (-1685.662) (-1664.299) [-1666.335] (-1662.103) * (-1675.968) (-1674.414) (-1665.789) [-1661.682] -- 0:05:31
615000 -- (-1671.563) [-1669.637] (-1665.655) (-1683.784) * (-1671.034) (-1678.784) [-1662.191] (-1674.445) -- 0:05:29
Average standard deviation of split frequencies: 0.007228
616000 -- [-1661.436] (-1655.891) (-1666.358) (-1677.700) * (-1663.393) [-1669.392] (-1677.284) (-1665.034) -- 0:05:29
617000 -- (-1667.057) (-1669.128) [-1666.713] (-1682.528) * [-1668.164] (-1670.403) (-1685.121) (-1655.351) -- 0:05:28
618000 -- (-1687.434) (-1674.869) [-1664.566] (-1670.406) * [-1654.765] (-1682.419) (-1670.152) (-1674.048) -- 0:05:27
619000 -- (-1671.235) (-1668.969) [-1663.564] (-1670.097) * (-1677.674) (-1674.494) (-1669.267) [-1657.906] -- 0:05:26
620000 -- (-1674.392) (-1675.546) (-1669.145) [-1671.374] * [-1661.778] (-1682.788) (-1670.237) (-1673.623) -- 0:05:25
Average standard deviation of split frequencies: 0.007207
621000 -- (-1674.924) (-1664.692) (-1656.094) [-1662.357] * (-1670.395) (-1667.559) [-1660.837] (-1673.110) -- 0:05:24
622000 -- (-1676.313) (-1670.329) (-1666.738) [-1665.978] * (-1665.396) (-1677.009) (-1655.497) [-1670.249] -- 0:05:23
623000 -- [-1661.101] (-1675.895) (-1660.608) (-1658.522) * (-1673.090) (-1668.431) [-1657.718] (-1678.527) -- 0:05:22
624000 -- [-1667.893] (-1659.937) (-1669.466) (-1682.606) * (-1672.135) (-1670.033) [-1660.121] (-1667.219) -- 0:05:21
625000 -- (-1668.565) (-1671.704) [-1665.782] (-1674.193) * (-1674.272) [-1671.228] (-1672.289) (-1664.857) -- 0:05:21
Average standard deviation of split frequencies: 0.006911
626000 -- (-1668.155) [-1662.309] (-1659.993) (-1674.112) * (-1677.801) [-1662.283] (-1663.032) (-1666.881) -- 0:05:19
627000 -- [-1666.636] (-1662.578) (-1669.189) (-1674.618) * (-1665.083) (-1675.012) (-1660.606) [-1662.965] -- 0:05:18
628000 -- [-1669.926] (-1671.074) (-1689.278) (-1659.916) * (-1673.097) (-1667.421) [-1671.977] (-1672.271) -- 0:05:18
629000 -- (-1676.512) [-1674.920] (-1659.846) (-1660.832) * (-1671.825) (-1678.041) (-1661.026) [-1665.089] -- 0:05:16
630000 -- (-1667.180) (-1682.063) (-1667.543) [-1663.950] * (-1668.616) (-1664.765) [-1660.080] (-1674.176) -- 0:05:15
Average standard deviation of split frequencies: 0.006927
631000 -- [-1667.398] (-1670.076) (-1677.711) (-1665.912) * (-1667.915) [-1665.307] (-1664.154) (-1676.241) -- 0:05:15
632000 -- (-1671.943) (-1668.192) [-1667.993] (-1668.257) * [-1671.055] (-1659.777) (-1661.268) (-1685.716) -- 0:05:14
633000 -- (-1660.560) (-1660.562) (-1677.906) [-1662.533] * (-1665.225) [-1656.859] (-1670.900) (-1683.640) -- 0:05:13
634000 -- [-1663.277] (-1666.363) (-1670.472) (-1673.185) * (-1670.718) [-1652.694] (-1667.902) (-1679.999) -- 0:05:12
635000 -- (-1683.917) (-1660.991) (-1668.718) [-1664.570] * (-1682.780) (-1663.212) (-1669.304) [-1667.048] -- 0:05:11
Average standard deviation of split frequencies: 0.006523
636000 -- (-1674.125) (-1667.826) (-1683.606) [-1658.384] * (-1673.305) (-1674.405) (-1657.935) [-1657.313] -- 0:05:10
637000 -- (-1660.898) (-1672.174) (-1677.544) [-1661.958] * (-1670.154) (-1684.822) [-1668.739] (-1665.529) -- 0:05:09
638000 -- (-1662.320) (-1669.671) (-1678.517) [-1662.780] * (-1670.566) [-1655.166] (-1677.258) (-1664.577) -- 0:05:08
639000 -- [-1673.909] (-1674.791) (-1676.083) (-1671.456) * (-1662.442) (-1662.520) [-1655.209] (-1664.356) -- 0:05:07
640000 -- (-1661.455) (-1678.269) [-1673.627] (-1663.215) * [-1650.923] (-1660.727) (-1667.506) (-1658.181) -- 0:05:06
Average standard deviation of split frequencies: 0.006475
641000 -- (-1663.235) (-1678.539) (-1663.910) [-1673.028] * [-1668.833] (-1665.313) (-1665.531) (-1675.682) -- 0:05:05
642000 -- (-1670.349) (-1676.842) (-1670.901) [-1667.596] * [-1662.835] (-1664.825) (-1664.676) (-1676.180) -- 0:05:05
643000 -- (-1670.415) (-1676.186) [-1661.698] (-1672.504) * (-1664.193) (-1687.491) [-1659.698] (-1676.321) -- 0:05:03
644000 -- [-1667.166] (-1670.173) (-1662.574) (-1671.355) * (-1659.712) [-1664.863] (-1665.707) (-1676.550) -- 0:05:02
645000 -- (-1672.927) (-1672.681) [-1660.617] (-1673.951) * [-1667.464] (-1661.448) (-1669.552) (-1665.066) -- 0:05:02
Average standard deviation of split frequencies: 0.006519
646000 -- (-1666.477) (-1673.160) [-1656.667] (-1674.427) * (-1681.211) (-1670.829) (-1677.124) [-1664.882] -- 0:05:01
647000 -- [-1668.314] (-1668.935) (-1677.017) (-1669.610) * [-1658.713] (-1676.539) (-1665.965) (-1675.509) -- 0:05:00
648000 -- [-1659.703] (-1681.429) (-1675.972) (-1663.140) * [-1673.066] (-1657.236) (-1678.567) (-1674.096) -- 0:04:59
649000 -- (-1664.282) (-1669.928) (-1665.918) [-1664.586] * (-1660.131) (-1669.521) (-1669.644) [-1662.745] -- 0:04:58
650000 -- [-1670.596] (-1663.863) (-1691.883) (-1680.627) * (-1671.802) [-1653.181] (-1664.837) (-1696.066) -- 0:04:57
Average standard deviation of split frequencies: 0.006923
651000 -- (-1678.010) [-1665.355] (-1677.783) (-1668.798) * (-1681.087) [-1665.906] (-1675.565) (-1671.087) -- 0:04:56
652000 -- [-1673.152] (-1662.597) (-1690.094) (-1671.361) * [-1673.207] (-1651.888) (-1676.530) (-1676.580) -- 0:04:55
653000 -- [-1662.600] (-1674.558) (-1689.285) (-1669.821) * (-1659.901) (-1673.227) (-1661.918) [-1663.837] -- 0:04:54
654000 -- [-1667.247] (-1673.887) (-1685.319) (-1649.664) * (-1665.099) (-1673.114) (-1667.984) [-1666.239] -- 0:04:53
655000 -- (-1662.019) (-1666.250) (-1677.395) [-1658.234] * (-1666.844) (-1686.466) (-1660.352) [-1662.655] -- 0:04:52
Average standard deviation of split frequencies: 0.007234
656000 -- [-1660.320] (-1668.370) (-1687.558) (-1665.763) * [-1659.304] (-1666.310) (-1674.494) (-1660.510) -- 0:04:52
657000 -- (-1663.005) [-1659.152] (-1678.925) (-1666.830) * [-1662.537] (-1673.397) (-1671.932) (-1675.495) -- 0:04:50
658000 -- (-1670.824) [-1666.014] (-1677.789) (-1668.723) * (-1658.697) (-1676.004) [-1669.405] (-1658.611) -- 0:04:50
659000 -- (-1670.765) [-1657.725] (-1669.595) (-1669.455) * (-1670.380) (-1664.920) (-1664.184) [-1663.596] -- 0:04:49
660000 -- (-1669.696) [-1666.452] (-1679.780) (-1670.338) * (-1669.971) (-1685.351) [-1660.506] (-1669.077) -- 0:04:48
Average standard deviation of split frequencies: 0.007072
661000 -- (-1673.066) [-1661.014] (-1669.505) (-1682.979) * (-1669.894) [-1671.169] (-1668.745) (-1665.935) -- 0:04:47
662000 -- (-1669.255) (-1670.892) [-1665.879] (-1692.264) * (-1668.904) [-1664.864] (-1671.873) (-1675.434) -- 0:04:46
663000 -- (-1665.013) (-1665.883) [-1654.115] (-1685.394) * (-1661.323) [-1658.735] (-1683.636) (-1684.446) -- 0:04:45
664000 -- [-1667.017] (-1677.433) (-1655.281) (-1677.389) * (-1669.315) [-1663.810] (-1677.404) (-1672.691) -- 0:04:44
665000 -- (-1674.380) (-1667.077) [-1658.655] (-1674.236) * (-1675.758) (-1666.902) (-1675.360) [-1666.468] -- 0:04:43
Average standard deviation of split frequencies: 0.006622
666000 -- (-1660.526) [-1677.385] (-1665.747) (-1679.541) * (-1669.029) (-1664.021) [-1662.311] (-1682.009) -- 0:04:42
667000 -- (-1663.985) (-1676.227) [-1665.845] (-1668.800) * (-1658.838) (-1685.714) (-1679.155) [-1659.453] -- 0:04:42
668000 -- [-1658.234] (-1671.543) (-1664.971) (-1685.867) * (-1659.900) (-1681.296) (-1667.726) [-1652.370] -- 0:04:40
669000 -- [-1664.654] (-1669.483) (-1677.254) (-1680.232) * (-1670.605) (-1673.515) (-1668.969) [-1660.377] -- 0:04:40
670000 -- (-1666.448) [-1662.078] (-1672.983) (-1677.718) * [-1670.465] (-1661.784) (-1681.177) (-1666.361) -- 0:04:39
Average standard deviation of split frequencies: 0.006857
671000 -- [-1666.500] (-1677.003) (-1678.545) (-1660.630) * (-1674.830) (-1660.205) (-1663.577) [-1665.142] -- 0:04:38
672000 -- [-1667.794] (-1671.936) (-1690.485) (-1664.807) * (-1680.847) (-1666.987) (-1675.027) [-1659.753] -- 0:04:37
673000 -- (-1667.742) (-1671.958) [-1677.550] (-1662.025) * (-1672.990) (-1676.689) (-1677.020) [-1657.120] -- 0:04:36
674000 -- (-1675.304) [-1665.807] (-1678.786) (-1666.927) * (-1664.045) [-1666.345] (-1675.242) (-1656.271) -- 0:04:35
675000 -- (-1674.254) (-1669.875) [-1663.795] (-1685.865) * (-1660.553) [-1661.899] (-1665.825) (-1663.953) -- 0:04:34
Average standard deviation of split frequencies: 0.006834
676000 -- (-1655.150) [-1660.180] (-1667.946) (-1678.479) * (-1667.932) [-1662.023] (-1679.998) (-1663.041) -- 0:04:33
677000 -- (-1662.264) [-1661.797] (-1679.641) (-1672.133) * (-1662.374) (-1674.602) [-1658.999] (-1684.603) -- 0:04:32
678000 -- [-1666.505] (-1668.116) (-1676.040) (-1671.503) * (-1668.861) [-1664.174] (-1656.171) (-1671.275) -- 0:04:31
679000 -- (-1682.361) (-1668.877) (-1669.195) [-1659.538] * (-1698.272) [-1665.020] (-1681.951) (-1667.636) -- 0:04:30
680000 -- (-1665.800) (-1677.408) [-1669.113] (-1657.854) * (-1687.588) (-1665.481) (-1672.912) [-1662.092] -- 0:04:30
Average standard deviation of split frequencies: 0.006587
681000 -- [-1669.546] (-1679.117) (-1678.702) (-1669.614) * [-1667.485] (-1684.788) (-1665.693) (-1668.991) -- 0:04:29
682000 -- [-1662.180] (-1669.142) (-1679.055) (-1668.540) * (-1680.244) (-1664.148) [-1662.847] (-1682.000) -- 0:04:28
683000 -- (-1666.099) (-1672.468) (-1670.331) [-1663.644] * (-1662.730) (-1666.287) [-1678.119] (-1677.821) -- 0:04:27
684000 -- (-1667.810) (-1676.831) [-1671.159] (-1669.566) * (-1673.261) [-1667.934] (-1678.286) (-1671.522) -- 0:04:26
685000 -- (-1674.891) (-1667.778) [-1665.030] (-1673.392) * (-1675.133) (-1678.155) (-1681.780) [-1662.498] -- 0:04:25
Average standard deviation of split frequencies: 0.006673
686000 -- (-1671.309) [-1662.271] (-1667.788) (-1670.426) * [-1668.028] (-1675.766) (-1678.385) (-1669.115) -- 0:04:24
687000 -- (-1673.742) [-1655.275] (-1669.730) (-1676.112) * [-1661.639] (-1687.578) (-1684.711) (-1676.898) -- 0:04:23
688000 -- (-1662.967) [-1659.877] (-1660.616) (-1671.835) * (-1673.614) (-1673.647) (-1696.444) [-1661.416] -- 0:04:23
689000 -- (-1664.719) [-1663.422] (-1662.949) (-1672.211) * (-1675.005) (-1664.526) (-1672.366) [-1662.209] -- 0:04:21
690000 -- [-1663.125] (-1675.446) (-1667.794) (-1666.547) * (-1671.082) (-1667.093) (-1668.547) [-1658.928] -- 0:04:21
Average standard deviation of split frequencies: 0.006704
691000 -- (-1683.956) (-1669.427) (-1671.373) [-1668.909] * (-1675.584) (-1659.626) [-1667.458] (-1668.310) -- 0:04:20
692000 -- [-1668.675] (-1670.040) (-1668.413) (-1673.018) * (-1674.870) (-1665.283) (-1683.473) [-1670.933] -- 0:04:19
693000 -- (-1672.142) (-1667.413) (-1668.421) [-1658.949] * [-1657.974] (-1668.960) (-1680.137) (-1668.529) -- 0:04:18
694000 -- [-1664.682] (-1671.404) (-1661.078) (-1664.711) * [-1677.354] (-1672.021) (-1677.535) (-1684.700) -- 0:04:17
695000 -- [-1664.695] (-1675.503) (-1684.037) (-1669.062) * (-1673.335) (-1675.744) (-1672.187) [-1671.545] -- 0:04:16
Average standard deviation of split frequencies: 0.006788
696000 -- [-1660.952] (-1670.021) (-1675.375) (-1672.367) * (-1660.885) (-1665.906) (-1667.876) [-1663.926] -- 0:04:15
697000 -- [-1648.644] (-1683.795) (-1673.285) (-1689.236) * (-1661.839) (-1658.889) (-1661.796) [-1661.068] -- 0:04:14
698000 -- [-1665.224] (-1675.779) (-1667.721) (-1671.906) * (-1672.403) [-1661.768] (-1661.977) (-1668.689) -- 0:04:13
699000 -- [-1667.698] (-1661.720) (-1656.677) (-1667.336) * (-1680.718) (-1674.757) [-1664.701] (-1664.684) -- 0:04:13
700000 -- [-1669.156] (-1670.137) (-1659.271) (-1664.680) * (-1677.365) (-1674.727) (-1678.809) [-1666.798] -- 0:04:12
Average standard deviation of split frequencies: 0.006653
701000 -- (-1665.760) [-1671.195] (-1664.413) (-1674.188) * (-1664.892) [-1690.247] (-1671.730) (-1676.322) -- 0:04:11
702000 -- (-1663.492) [-1670.169] (-1668.829) (-1677.487) * [-1661.148] (-1684.248) (-1674.066) (-1666.553) -- 0:04:10
703000 -- [-1659.718] (-1675.462) (-1669.064) (-1679.173) * (-1683.467) (-1672.910) [-1664.754] (-1667.314) -- 0:04:09
704000 -- [-1665.867] (-1671.568) (-1667.824) (-1666.502) * (-1664.731) (-1677.363) (-1654.635) [-1666.831] -- 0:04:08
705000 -- (-1692.657) (-1664.298) (-1666.635) [-1663.416] * (-1666.523) (-1676.408) (-1676.513) [-1662.651] -- 0:04:07
Average standard deviation of split frequencies: 0.006751
706000 -- (-1684.377) [-1669.871] (-1682.185) (-1668.375) * (-1672.769) [-1673.161] (-1663.372) (-1679.039) -- 0:04:06
707000 -- [-1665.934] (-1659.252) (-1673.610) (-1672.141) * [-1663.769] (-1672.936) (-1669.009) (-1659.596) -- 0:04:05
708000 -- (-1681.674) (-1678.129) [-1660.261] (-1668.042) * (-1680.318) (-1674.371) (-1677.166) [-1661.655] -- 0:04:04
709000 -- (-1673.270) (-1664.248) [-1651.672] (-1674.465) * (-1673.382) (-1673.210) (-1683.109) [-1655.835] -- 0:04:04
710000 -- (-1676.941) (-1665.977) [-1660.598] (-1666.204) * [-1663.970] (-1673.068) (-1676.782) (-1667.762) -- 0:04:03
Average standard deviation of split frequencies: 0.006677
711000 -- [-1662.222] (-1678.664) (-1680.753) (-1686.817) * (-1686.114) [-1670.843] (-1684.563) (-1669.304) -- 0:04:02
712000 -- [-1670.708] (-1677.223) (-1666.301) (-1681.011) * (-1672.148) (-1660.798) (-1678.567) [-1657.580] -- 0:04:01
713000 -- (-1670.767) [-1653.160] (-1663.630) (-1667.373) * (-1669.437) (-1674.189) [-1663.358] (-1654.596) -- 0:04:00
714000 -- (-1664.751) [-1659.935] (-1661.677) (-1679.200) * (-1661.473) (-1665.582) (-1667.631) [-1661.671] -- 0:03:59
715000 -- (-1672.471) [-1662.189] (-1665.037) (-1666.556) * (-1664.889) (-1681.957) (-1661.344) [-1660.189] -- 0:03:58
Average standard deviation of split frequencies: 0.006876
716000 -- (-1674.369) (-1663.745) (-1675.801) [-1660.749] * [-1654.087] (-1686.639) (-1665.747) (-1662.270) -- 0:03:57
717000 -- (-1665.267) [-1658.708] (-1677.038) (-1663.971) * (-1668.415) (-1674.411) (-1666.302) [-1668.128] -- 0:03:56
718000 -- (-1668.192) [-1659.186] (-1668.366) (-1671.342) * (-1665.022) (-1668.778) [-1658.005] (-1692.842) -- 0:03:56
719000 -- (-1674.676) [-1654.436] (-1668.207) (-1677.790) * [-1656.988] (-1666.536) (-1673.036) (-1688.945) -- 0:03:55
720000 -- (-1670.257) [-1663.370] (-1656.253) (-1672.971) * (-1656.330) (-1661.636) [-1662.547] (-1680.409) -- 0:03:54
Average standard deviation of split frequencies: 0.007065
721000 -- (-1663.642) (-1655.449) [-1657.437] (-1679.514) * (-1670.258) (-1661.299) [-1663.650] (-1666.044) -- 0:03:53
722000 -- (-1664.093) (-1676.856) [-1672.606] (-1673.729) * (-1682.848) (-1665.126) (-1668.701) [-1672.883] -- 0:03:52
723000 -- (-1670.454) (-1661.802) [-1671.267] (-1669.255) * (-1682.602) (-1667.105) (-1678.902) [-1663.535] -- 0:03:51
724000 -- [-1667.095] (-1667.385) (-1673.897) (-1677.768) * (-1688.903) (-1665.237) (-1667.097) [-1675.999] -- 0:03:50
725000 -- (-1664.447) (-1665.632) [-1655.305] (-1675.099) * (-1665.470) [-1655.007] (-1660.158) (-1673.308) -- 0:03:49
Average standard deviation of split frequencies: 0.007056
726000 -- [-1659.043] (-1661.703) (-1661.962) (-1683.273) * (-1671.745) [-1658.933] (-1657.599) (-1676.182) -- 0:03:49
727000 -- (-1662.404) (-1663.096) [-1657.587] (-1692.026) * (-1679.650) (-1672.279) [-1660.198] (-1671.667) -- 0:03:47
728000 -- (-1669.680) (-1661.394) [-1657.229] (-1698.285) * (-1666.519) (-1666.321) [-1663.343] (-1671.232) -- 0:03:47
729000 -- (-1675.793) [-1664.150] (-1662.485) (-1682.527) * [-1668.841] (-1671.171) (-1662.184) (-1678.210) -- 0:03:46
730000 -- (-1682.820) (-1659.004) [-1660.986] (-1694.678) * (-1678.288) [-1670.161] (-1676.404) (-1667.866) -- 0:03:45
Average standard deviation of split frequencies: 0.007255
731000 -- (-1680.357) (-1661.610) [-1655.832] (-1686.179) * (-1670.234) (-1672.871) (-1675.447) [-1671.560] -- 0:03:44
732000 -- (-1669.018) (-1667.479) [-1666.236] (-1675.882) * [-1668.746] (-1677.315) (-1683.581) (-1667.541) -- 0:03:43
733000 -- (-1664.795) (-1661.447) [-1660.461] (-1682.765) * (-1664.672) (-1669.319) [-1667.704] (-1678.615) -- 0:03:42
734000 -- (-1659.389) [-1667.946] (-1669.904) (-1667.275) * (-1663.847) [-1663.208] (-1677.466) (-1663.991) -- 0:03:41
735000 -- (-1670.594) [-1654.458] (-1667.904) (-1674.510) * (-1675.780) [-1659.826] (-1668.665) (-1667.195) -- 0:03:41
Average standard deviation of split frequencies: 0.007344
736000 -- [-1662.049] (-1673.299) (-1663.906) (-1681.195) * [-1658.330] (-1666.258) (-1663.194) (-1666.230) -- 0:03:40
737000 -- (-1669.955) (-1677.493) (-1677.125) [-1659.580] * (-1665.118) [-1666.861] (-1664.905) (-1678.263) -- 0:03:39
738000 -- (-1657.169) (-1664.850) [-1659.746] (-1670.503) * [-1653.447] (-1667.938) (-1674.390) (-1663.171) -- 0:03:38
739000 -- (-1660.562) (-1675.439) [-1653.427] (-1671.422) * (-1659.155) (-1667.395) (-1682.444) [-1667.120] -- 0:03:37
740000 -- [-1658.437] (-1661.290) (-1671.410) (-1663.359) * (-1659.026) [-1660.997] (-1671.266) (-1678.378) -- 0:03:36
Average standard deviation of split frequencies: 0.007425
741000 -- (-1661.993) (-1661.291) (-1671.387) [-1669.626] * (-1661.112) [-1660.810] (-1668.863) (-1676.727) -- 0:03:35
742000 -- (-1665.146) (-1674.936) (-1669.844) [-1667.951] * (-1668.061) (-1660.745) [-1662.592] (-1667.147) -- 0:03:34
743000 -- (-1680.201) (-1673.487) [-1669.683] (-1668.549) * (-1675.714) (-1681.960) (-1671.592) [-1662.298] -- 0:03:34
744000 -- (-1701.371) (-1667.508) (-1665.267) [-1663.040] * (-1681.582) (-1661.599) (-1669.270) [-1660.976] -- 0:03:32
745000 -- (-1673.256) [-1660.474] (-1677.541) (-1687.447) * (-1668.099) [-1665.879] (-1662.753) (-1671.152) -- 0:03:32
Average standard deviation of split frequencies: 0.007653
746000 -- (-1668.213) (-1654.974) [-1665.012] (-1666.726) * (-1665.188) (-1663.414) [-1662.188] (-1674.319) -- 0:03:31
747000 -- (-1665.760) (-1660.239) [-1659.403] (-1666.264) * (-1664.566) (-1665.204) (-1674.440) [-1669.793] -- 0:03:30
748000 -- (-1673.745) [-1661.684] (-1684.011) (-1674.972) * (-1675.309) (-1671.786) [-1675.301] (-1664.146) -- 0:03:29
749000 -- (-1668.230) [-1666.463] (-1667.620) (-1661.750) * (-1673.157) (-1665.253) [-1666.498] (-1670.512) -- 0:03:28
750000 -- (-1676.294) [-1665.511] (-1681.203) (-1668.251) * (-1678.523) [-1669.298] (-1665.980) (-1679.109) -- 0:03:28
Average standard deviation of split frequencies: 0.007438
751000 -- [-1668.043] (-1677.055) (-1697.071) (-1664.696) * (-1671.854) (-1661.462) [-1660.466] (-1670.231) -- 0:03:26
752000 -- (-1656.695) (-1673.467) (-1696.461) [-1659.064] * (-1663.319) (-1659.392) [-1667.448] (-1674.233) -- 0:03:26
753000 -- (-1672.488) (-1685.631) (-1687.833) [-1653.999] * (-1668.446) [-1648.780] (-1677.501) (-1668.252) -- 0:03:25
754000 -- (-1666.720) [-1665.010] (-1682.634) (-1670.128) * (-1679.652) (-1660.894) [-1674.482] (-1667.674) -- 0:03:24
755000 -- [-1663.729] (-1662.982) (-1668.899) (-1683.478) * (-1674.646) [-1662.250] (-1662.523) (-1673.929) -- 0:03:23
Average standard deviation of split frequencies: 0.007275
756000 -- (-1678.685) [-1658.954] (-1665.788) (-1665.738) * [-1672.312] (-1653.872) (-1667.341) (-1666.524) -- 0:03:22
757000 -- (-1666.952) [-1659.055] (-1664.868) (-1677.314) * (-1683.136) (-1669.844) [-1669.976] (-1663.652) -- 0:03:21
758000 -- (-1671.014) [-1662.309] (-1684.701) (-1667.140) * (-1677.763) [-1670.341] (-1672.429) (-1674.750) -- 0:03:21
759000 -- (-1667.108) (-1658.674) [-1663.156] (-1673.197) * (-1667.044) [-1665.019] (-1670.720) (-1675.265) -- 0:03:20
760000 -- (-1669.334) (-1665.712) (-1668.538) [-1667.475] * (-1678.014) (-1665.212) [-1668.311] (-1674.314) -- 0:03:19
Average standard deviation of split frequencies: 0.007574
761000 -- (-1681.806) (-1675.277) [-1661.082] (-1672.841) * (-1677.918) (-1668.585) (-1657.032) [-1663.670] -- 0:03:18
762000 -- [-1674.266] (-1666.279) (-1671.764) (-1664.319) * (-1675.042) [-1667.677] (-1659.643) (-1662.100) -- 0:03:18
763000 -- [-1661.430] (-1663.141) (-1681.391) (-1675.829) * (-1657.823) [-1668.229] (-1660.393) (-1676.474) -- 0:03:17
764000 -- (-1663.522) [-1656.193] (-1678.024) (-1674.667) * [-1669.331] (-1659.185) (-1659.318) (-1678.143) -- 0:03:16
765000 -- (-1674.285) (-1678.026) (-1674.397) [-1678.349] * (-1675.743) [-1660.287] (-1667.433) (-1678.976) -- 0:03:15
Average standard deviation of split frequencies: 0.007440
766000 -- (-1666.181) (-1673.843) [-1660.080] (-1667.651) * (-1668.116) (-1673.081) (-1654.817) [-1664.552] -- 0:03:15
767000 -- (-1683.369) (-1683.351) [-1657.475] (-1670.647) * (-1660.270) (-1668.829) (-1669.901) [-1668.737] -- 0:03:14
768000 -- [-1675.760] (-1671.222) (-1682.129) (-1656.916) * (-1682.778) [-1661.618] (-1674.943) (-1685.845) -- 0:03:13
769000 -- (-1665.056) [-1660.816] (-1667.408) (-1672.162) * (-1703.036) (-1665.929) (-1672.442) [-1672.383] -- 0:03:12
770000 -- (-1668.654) [-1662.246] (-1683.636) (-1655.641) * (-1668.163) (-1669.948) (-1673.555) [-1657.770] -- 0:03:12
Average standard deviation of split frequencies: 0.007490
771000 -- [-1666.650] (-1664.835) (-1658.132) (-1661.678) * [-1671.528] (-1674.820) (-1666.221) (-1672.966) -- 0:03:11
772000 -- [-1667.780] (-1684.393) (-1677.242) (-1669.000) * [-1658.349] (-1687.055) (-1659.954) (-1673.099) -- 0:03:10
773000 -- (-1665.834) (-1684.474) [-1674.465] (-1675.854) * [-1660.084] (-1678.744) (-1670.229) (-1660.969) -- 0:03:09
774000 -- (-1663.489) (-1672.667) [-1666.719] (-1688.344) * (-1666.956) (-1664.931) (-1659.014) [-1661.331] -- 0:03:09
775000 -- (-1660.682) (-1673.580) [-1669.908] (-1681.000) * [-1676.800] (-1674.694) (-1662.601) (-1666.637) -- 0:03:08
Average standard deviation of split frequencies: 0.007303
776000 -- (-1665.367) [-1665.651] (-1678.112) (-1659.700) * [-1675.431] (-1666.614) (-1671.460) (-1688.836) -- 0:03:07
777000 -- (-1671.304) (-1662.226) (-1665.248) [-1655.840] * (-1670.785) (-1675.787) (-1670.676) [-1671.017] -- 0:03:06
778000 -- (-1658.967) (-1673.625) [-1660.078] (-1663.414) * (-1678.582) (-1673.281) (-1666.777) [-1662.098] -- 0:03:06
779000 -- [-1659.725] (-1666.649) (-1672.001) (-1661.683) * (-1670.627) (-1667.783) (-1670.630) [-1664.628] -- 0:03:05
780000 -- (-1672.433) (-1675.456) [-1664.595] (-1674.284) * (-1662.034) (-1680.245) (-1667.843) [-1660.409] -- 0:03:04
Average standard deviation of split frequencies: 0.007407
781000 -- (-1666.705) (-1653.319) [-1669.479] (-1667.413) * (-1679.859) (-1671.519) (-1685.605) [-1663.790] -- 0:03:03
782000 -- (-1663.678) (-1668.061) (-1677.548) [-1666.767] * (-1669.764) [-1656.274] (-1674.159) (-1680.404) -- 0:03:03
783000 -- [-1660.970] (-1672.282) (-1668.519) (-1679.247) * (-1678.013) (-1665.365) [-1668.624] (-1668.675) -- 0:03:02
784000 -- (-1668.009) (-1659.104) [-1667.317] (-1679.127) * (-1671.257) (-1667.064) (-1667.764) [-1664.308] -- 0:03:01
785000 -- [-1664.854] (-1673.363) (-1674.050) (-1678.857) * (-1682.108) (-1668.574) [-1668.704] (-1679.679) -- 0:03:00
Average standard deviation of split frequencies: 0.007197
786000 -- [-1665.383] (-1688.253) (-1684.689) (-1676.053) * (-1679.754) [-1664.076] (-1666.561) (-1672.303) -- 0:02:59
787000 -- (-1677.441) [-1658.637] (-1657.288) (-1656.631) * (-1672.381) (-1670.935) [-1675.982] (-1664.738) -- 0:02:59
788000 -- (-1674.167) [-1672.541] (-1660.039) (-1668.048) * [-1660.508] (-1677.405) (-1673.369) (-1676.900) -- 0:02:58
789000 -- [-1674.487] (-1674.346) (-1676.371) (-1681.828) * (-1674.981) (-1665.173) (-1682.816) [-1671.405] -- 0:02:57
790000 -- (-1670.470) (-1666.083) [-1655.690] (-1683.235) * (-1672.961) (-1661.926) [-1661.947] (-1677.809) -- 0:02:57
Average standard deviation of split frequencies: 0.007035
791000 -- [-1674.546] (-1674.255) (-1663.760) (-1669.741) * (-1668.705) [-1662.620] (-1667.000) (-1670.696) -- 0:02:56
792000 -- [-1673.199] (-1674.447) (-1667.819) (-1669.833) * (-1684.377) [-1658.424] (-1667.967) (-1670.603) -- 0:02:55
793000 -- (-1675.608) (-1674.851) [-1667.659] (-1686.694) * (-1679.985) [-1663.058] (-1656.770) (-1672.890) -- 0:02:54
794000 -- (-1669.042) [-1657.813] (-1672.949) (-1690.881) * (-1696.613) (-1662.970) [-1657.703] (-1671.359) -- 0:02:53
795000 -- [-1656.095] (-1650.682) (-1674.957) (-1686.141) * [-1661.627] (-1670.691) (-1675.520) (-1682.811) -- 0:02:53
Average standard deviation of split frequencies: 0.007436
796000 -- (-1666.792) [-1658.368] (-1662.838) (-1662.917) * (-1664.400) (-1671.585) (-1678.508) [-1678.457] -- 0:02:52
797000 -- (-1661.484) (-1664.443) [-1670.439] (-1674.839) * (-1671.832) (-1669.336) [-1670.682] (-1675.860) -- 0:02:51
798000 -- (-1661.633) (-1673.392) [-1677.930] (-1662.842) * (-1681.750) [-1668.178] (-1670.336) (-1652.516) -- 0:02:50
799000 -- [-1678.942] (-1677.503) (-1679.338) (-1672.569) * (-1683.801) (-1676.455) (-1662.578) [-1665.360] -- 0:02:50
800000 -- (-1673.973) [-1665.406] (-1680.174) (-1658.789) * (-1663.146) (-1669.868) (-1670.307) [-1665.520] -- 0:02:49
Average standard deviation of split frequencies: 0.007314
801000 -- (-1664.050) (-1674.002) (-1665.376) [-1663.367] * (-1660.839) (-1671.653) [-1659.734] (-1685.732) -- 0:02:48
802000 -- [-1655.205] (-1669.129) (-1669.449) (-1673.601) * [-1658.302] (-1671.892) (-1659.911) (-1676.377) -- 0:02:47
803000 -- [-1657.838] (-1678.083) (-1689.375) (-1687.467) * [-1662.014] (-1670.744) (-1673.191) (-1671.642) -- 0:02:47
804000 -- [-1666.375] (-1660.708) (-1675.654) (-1670.007) * [-1656.277] (-1680.428) (-1663.108) (-1660.885) -- 0:02:46
805000 -- [-1657.682] (-1666.873) (-1683.020) (-1666.676) * [-1667.743] (-1666.673) (-1675.595) (-1669.587) -- 0:02:45
Average standard deviation of split frequencies: 0.007343
806000 -- [-1651.992] (-1663.924) (-1665.025) (-1678.901) * (-1670.487) (-1676.727) [-1670.858] (-1671.600) -- 0:02:44
807000 -- (-1675.712) [-1666.348] (-1657.673) (-1674.501) * (-1677.934) [-1676.837] (-1666.875) (-1676.009) -- 0:02:43
808000 -- (-1662.642) (-1674.515) (-1664.754) [-1654.667] * (-1673.620) (-1670.688) (-1676.703) [-1661.958] -- 0:02:43
809000 -- (-1674.982) (-1660.627) (-1667.390) [-1662.277] * (-1667.622) (-1671.216) (-1673.086) [-1655.274] -- 0:02:42
810000 -- [-1669.019] (-1665.658) (-1682.682) (-1667.676) * [-1664.211] (-1663.541) (-1682.745) (-1661.019) -- 0:02:41
Average standard deviation of split frequencies: 0.007172
811000 -- (-1677.691) [-1661.322] (-1665.595) (-1660.600) * (-1656.773) (-1665.872) [-1669.426] (-1675.329) -- 0:02:40
812000 -- (-1672.147) (-1656.077) (-1677.692) [-1662.485] * [-1657.139] (-1680.180) (-1659.153) (-1672.686) -- 0:02:39
813000 -- (-1663.046) (-1662.452) (-1684.039) [-1673.420] * (-1669.870) [-1666.915] (-1663.433) (-1685.581) -- 0:02:39
814000 -- (-1662.548) [-1665.982] (-1665.744) (-1682.255) * [-1661.011] (-1668.261) (-1663.504) (-1671.320) -- 0:02:38
815000 -- [-1658.934] (-1668.776) (-1673.585) (-1682.227) * (-1680.269) (-1672.304) (-1664.405) [-1667.726] -- 0:02:37
Average standard deviation of split frequencies: 0.007086
816000 -- (-1668.181) (-1694.004) [-1659.447] (-1666.021) * [-1658.626] (-1670.347) (-1674.151) (-1660.388) -- 0:02:36
817000 -- (-1662.865) (-1688.394) [-1658.270] (-1682.041) * (-1668.681) [-1671.217] (-1668.962) (-1680.419) -- 0:02:35
818000 -- (-1661.003) (-1693.956) (-1667.262) [-1678.332] * [-1665.159] (-1675.404) (-1675.967) (-1671.851) -- 0:02:35
819000 -- (-1659.863) (-1671.972) [-1673.354] (-1679.856) * (-1669.748) (-1680.771) [-1676.778] (-1661.576) -- 0:02:34
820000 -- (-1671.954) (-1678.640) (-1662.143) [-1667.015] * [-1665.411] (-1679.299) (-1678.199) (-1667.364) -- 0:02:33
Average standard deviation of split frequencies: 0.006893
821000 -- [-1666.642] (-1672.722) (-1693.800) (-1661.385) * (-1672.004) (-1674.413) (-1671.724) [-1662.966] -- 0:02:32
822000 -- (-1659.958) (-1678.407) [-1662.817] (-1678.075) * (-1662.666) (-1677.319) [-1671.025] (-1675.763) -- 0:02:32
823000 -- (-1684.427) (-1664.674) (-1654.279) [-1661.428] * (-1672.789) [-1668.009] (-1671.537) (-1676.316) -- 0:02:31
824000 -- (-1665.897) (-1663.507) (-1672.886) [-1668.494] * (-1681.619) (-1660.713) [-1666.453] (-1681.196) -- 0:02:30
825000 -- [-1663.565] (-1679.957) (-1663.484) (-1672.275) * [-1679.409] (-1674.381) (-1664.884) (-1667.766) -- 0:02:29
Average standard deviation of split frequencies: 0.006785
826000 -- (-1676.859) (-1666.040) [-1664.895] (-1686.233) * (-1680.713) [-1674.602] (-1668.272) (-1667.988) -- 0:02:28
827000 -- [-1666.086] (-1667.850) (-1683.741) (-1678.780) * [-1673.195] (-1670.663) (-1684.635) (-1674.065) -- 0:02:27
828000 -- (-1682.315) [-1660.036] (-1671.706) (-1675.149) * [-1661.495] (-1668.367) (-1687.554) (-1660.174) -- 0:02:27
829000 -- (-1660.146) (-1673.387) (-1680.237) [-1669.518] * [-1666.132] (-1675.052) (-1668.017) (-1668.689) -- 0:02:26
830000 -- (-1660.130) (-1675.253) (-1663.099) [-1662.615] * (-1673.287) (-1689.186) (-1659.901) [-1658.797] -- 0:02:25
Average standard deviation of split frequencies: 0.006848
831000 -- [-1651.797] (-1667.104) (-1660.522) (-1668.091) * [-1661.976] (-1676.554) (-1658.646) (-1665.463) -- 0:02:24
832000 -- (-1665.045) [-1669.073] (-1673.634) (-1660.169) * (-1661.605) (-1685.996) (-1666.305) [-1672.450] -- 0:02:23
833000 -- [-1658.567] (-1679.504) (-1665.184) (-1673.300) * (-1673.887) (-1680.904) [-1668.568] (-1674.333) -- 0:02:22
834000 -- (-1677.053) [-1664.882] (-1666.776) (-1661.689) * (-1674.812) [-1667.297] (-1660.371) (-1665.137) -- 0:02:21
835000 -- (-1662.378) (-1686.961) [-1662.855] (-1676.545) * [-1663.833] (-1668.489) (-1660.243) (-1665.556) -- 0:02:20
Average standard deviation of split frequencies: 0.007017
836000 -- (-1659.085) [-1663.930] (-1664.192) (-1667.010) * (-1673.232) (-1666.784) (-1655.728) [-1666.049] -- 0:02:20
837000 -- (-1659.672) (-1697.198) [-1670.341] (-1675.652) * [-1662.864] (-1688.332) (-1670.567) (-1658.482) -- 0:02:19
838000 -- [-1658.401] (-1671.490) (-1676.476) (-1662.767) * (-1676.073) (-1674.261) (-1672.584) [-1665.484] -- 0:02:18
839000 -- (-1659.103) (-1682.846) (-1667.600) [-1655.975] * (-1670.464) (-1668.768) [-1663.028] (-1665.207) -- 0:02:17
840000 -- (-1681.357) (-1674.740) [-1659.562] (-1667.645) * (-1662.363) (-1677.153) [-1662.956] (-1670.524) -- 0:02:16
Average standard deviation of split frequencies: 0.007041
841000 -- (-1673.560) (-1663.541) [-1664.327] (-1671.838) * (-1672.063) (-1672.170) [-1655.198] (-1663.013) -- 0:02:15
842000 -- (-1680.098) (-1660.962) (-1656.585) [-1663.718] * (-1660.177) (-1673.408) [-1662.311] (-1670.950) -- 0:02:14
843000 -- (-1672.814) (-1668.445) (-1664.784) [-1655.599] * (-1657.834) (-1678.808) (-1661.112) [-1662.875] -- 0:02:13
844000 -- (-1665.103) [-1657.727] (-1680.287) (-1671.718) * (-1681.479) [-1649.498] (-1665.524) (-1660.236) -- 0:02:13
845000 -- (-1665.836) [-1658.348] (-1698.810) (-1682.946) * (-1673.084) [-1657.607] (-1663.000) (-1673.121) -- 0:02:12
Average standard deviation of split frequencies: 0.007046
846000 -- (-1676.329) [-1665.204] (-1664.982) (-1680.076) * (-1658.337) [-1663.608] (-1670.721) (-1668.849) -- 0:02:11
847000 -- [-1668.542] (-1676.042) (-1663.358) (-1682.157) * (-1657.274) [-1656.832] (-1667.038) (-1677.508) -- 0:02:10
848000 -- (-1670.582) (-1679.498) (-1672.813) [-1662.743] * (-1660.935) (-1666.457) (-1667.304) [-1667.350] -- 0:02:09
849000 -- (-1662.737) (-1687.917) (-1661.928) [-1662.809] * (-1667.428) (-1682.980) [-1660.251] (-1673.263) -- 0:02:08
850000 -- (-1670.499) (-1674.169) [-1650.351] (-1671.741) * (-1670.519) (-1672.816) (-1658.514) [-1670.404] -- 0:02:07
Average standard deviation of split frequencies: 0.007167
851000 -- [-1660.450] (-1678.873) (-1689.654) (-1662.187) * (-1674.869) [-1658.485] (-1683.772) (-1674.581) -- 0:02:06
852000 -- [-1659.705] (-1689.551) (-1669.025) (-1664.471) * (-1672.016) [-1664.816] (-1679.393) (-1676.770) -- 0:02:05
853000 -- (-1672.919) [-1669.123] (-1670.569) (-1665.110) * [-1670.539] (-1674.876) (-1669.149) (-1685.084) -- 0:02:05
854000 -- (-1668.085) [-1665.370] (-1667.964) (-1671.302) * (-1680.796) (-1669.551) (-1659.101) [-1672.367] -- 0:02:04
855000 -- (-1687.676) [-1655.928] (-1676.660) (-1663.376) * [-1657.000] (-1668.346) (-1658.867) (-1671.587) -- 0:02:03
Average standard deviation of split frequencies: 0.007379
856000 -- (-1663.795) [-1659.931] (-1670.085) (-1680.881) * (-1669.663) [-1663.056] (-1666.911) (-1678.660) -- 0:02:02
857000 -- (-1668.862) [-1659.845] (-1656.968) (-1667.756) * (-1676.504) [-1672.209] (-1660.530) (-1670.772) -- 0:02:01
858000 -- (-1680.798) (-1664.783) (-1670.193) [-1662.611] * [-1665.874] (-1672.395) (-1666.603) (-1672.891) -- 0:02:00
859000 -- (-1686.870) [-1662.175] (-1663.045) (-1662.173) * [-1660.657] (-1670.316) (-1665.452) (-1676.816) -- 0:01:59
860000 -- (-1673.783) [-1664.811] (-1685.194) (-1661.126) * (-1682.073) [-1665.958] (-1661.060) (-1663.115) -- 0:01:59
Average standard deviation of split frequencies: 0.007473
861000 -- (-1681.595) [-1658.391] (-1665.521) (-1661.786) * (-1673.899) [-1664.386] (-1666.988) (-1683.180) -- 0:01:58
862000 -- (-1669.487) [-1672.955] (-1657.703) (-1665.088) * (-1668.709) [-1660.293] (-1664.191) (-1663.083) -- 0:01:57
863000 -- [-1665.755] (-1665.547) (-1674.027) (-1659.866) * (-1670.617) (-1681.266) [-1666.096] (-1663.243) -- 0:01:56
864000 -- [-1665.564] (-1676.839) (-1686.039) (-1666.945) * (-1682.861) (-1688.789) (-1671.750) [-1671.237] -- 0:01:55
865000 -- (-1675.473) [-1665.100] (-1674.447) (-1663.178) * [-1645.657] (-1696.886) (-1667.642) (-1673.115) -- 0:01:54
Average standard deviation of split frequencies: 0.007270
866000 -- (-1674.595) (-1670.688) (-1671.933) [-1656.697] * [-1669.467] (-1667.124) (-1663.321) (-1669.527) -- 0:01:53
867000 -- (-1670.284) [-1675.899] (-1674.420) (-1664.890) * (-1682.839) [-1660.704] (-1666.221) (-1668.248) -- 0:01:52
868000 -- (-1667.908) [-1673.409] (-1679.437) (-1663.565) * (-1673.264) (-1665.680) (-1665.849) [-1665.372] -- 0:01:52
869000 -- (-1663.545) (-1665.555) (-1678.174) [-1670.667] * (-1666.856) (-1672.552) [-1654.078] (-1675.856) -- 0:01:51
870000 -- (-1669.286) [-1666.444] (-1669.844) (-1662.142) * [-1666.051] (-1673.907) (-1664.501) (-1670.382) -- 0:01:50
Average standard deviation of split frequencies: 0.007267
871000 -- [-1660.651] (-1669.497) (-1676.037) (-1663.551) * [-1660.310] (-1665.646) (-1679.711) (-1670.887) -- 0:01:49
872000 -- [-1667.340] (-1661.600) (-1670.935) (-1662.327) * (-1680.752) [-1665.971] (-1669.038) (-1657.834) -- 0:01:48
873000 -- [-1666.694] (-1683.168) (-1670.846) (-1684.536) * (-1667.691) [-1663.907] (-1673.358) (-1666.567) -- 0:01:47
874000 -- [-1656.150] (-1670.572) (-1682.842) (-1659.048) * (-1665.969) (-1657.381) [-1660.290] (-1681.787) -- 0:01:46
875000 -- [-1660.573] (-1671.630) (-1664.189) (-1662.024) * (-1673.485) (-1671.803) [-1659.238] (-1666.087) -- 0:01:46
Average standard deviation of split frequencies: 0.007235
876000 -- [-1659.144] (-1667.792) (-1666.378) (-1673.994) * (-1659.754) [-1662.193] (-1691.617) (-1671.054) -- 0:01:45
877000 -- (-1677.874) (-1664.890) [-1661.359] (-1674.859) * (-1654.535) [-1669.763] (-1681.563) (-1669.497) -- 0:01:44
878000 -- (-1661.521) (-1671.258) (-1674.454) [-1676.410] * [-1656.974] (-1659.129) (-1685.441) (-1673.262) -- 0:01:43
879000 -- (-1677.676) [-1672.680] (-1654.777) (-1674.174) * (-1676.278) [-1661.351] (-1674.843) (-1672.758) -- 0:01:42
880000 -- (-1693.186) (-1674.140) (-1668.768) [-1657.910] * (-1686.225) (-1654.767) [-1661.269] (-1667.487) -- 0:01:41
Average standard deviation of split frequencies: 0.007149
881000 -- (-1672.822) (-1677.179) [-1656.462] (-1661.901) * (-1663.529) [-1666.939] (-1667.659) (-1665.494) -- 0:01:40
882000 -- (-1667.857) [-1661.761] (-1677.661) (-1676.967) * [-1660.751] (-1669.479) (-1668.368) (-1665.558) -- 0:01:39
883000 -- (-1658.205) (-1669.024) (-1663.316) [-1668.223] * (-1662.579) [-1659.193] (-1696.399) (-1666.606) -- 0:01:39
884000 -- [-1661.309] (-1674.683) (-1660.359) (-1667.947) * (-1663.705) (-1678.201) [-1674.739] (-1664.019) -- 0:01:38
885000 -- (-1669.477) (-1675.340) (-1657.549) [-1660.440] * (-1669.544) [-1664.890] (-1706.404) (-1659.659) -- 0:01:37
Average standard deviation of split frequencies: 0.007000
886000 -- (-1679.026) (-1671.733) [-1664.597] (-1660.464) * (-1656.742) (-1667.966) (-1681.876) [-1662.117] -- 0:01:36
887000 -- (-1667.515) (-1660.131) [-1666.376] (-1674.154) * (-1667.510) (-1673.859) [-1674.397] (-1688.893) -- 0:01:35
888000 -- (-1667.688) (-1665.824) (-1662.168) [-1658.353] * (-1674.769) (-1661.664) (-1673.807) [-1659.543] -- 0:01:34
889000 -- (-1665.874) (-1671.987) [-1665.822] (-1658.054) * (-1659.747) [-1657.480] (-1669.404) (-1668.120) -- 0:01:33
890000 -- (-1667.376) (-1677.527) (-1669.861) [-1656.478] * (-1661.885) [-1672.004] (-1657.032) (-1679.699) -- 0:01:33
Average standard deviation of split frequencies: 0.006822
891000 -- (-1681.852) (-1680.905) (-1672.126) [-1656.153] * [-1664.314] (-1671.497) (-1664.577) (-1677.586) -- 0:01:32
892000 -- (-1666.766) (-1688.096) (-1667.708) [-1651.568] * [-1664.222] (-1666.406) (-1675.249) (-1667.362) -- 0:01:31
893000 -- [-1662.534] (-1674.962) (-1664.092) (-1675.711) * [-1666.398] (-1668.983) (-1685.099) (-1665.507) -- 0:01:30
894000 -- (-1667.574) (-1671.433) (-1683.107) [-1669.510] * (-1678.141) [-1653.246] (-1673.198) (-1671.026) -- 0:01:29
895000 -- (-1672.104) (-1673.997) (-1672.697) [-1672.278] * (-1676.567) (-1693.749) [-1659.018] (-1654.613) -- 0:01:28
Average standard deviation of split frequencies: 0.006840
896000 -- [-1669.969] (-1685.219) (-1676.475) (-1663.925) * [-1668.283] (-1672.155) (-1676.820) (-1663.823) -- 0:01:28
897000 -- [-1664.893] (-1655.630) (-1692.756) (-1662.038) * [-1652.947] (-1659.023) (-1666.027) (-1685.578) -- 0:01:27
898000 -- (-1669.862) [-1657.040] (-1673.401) (-1675.857) * [-1670.688] (-1684.769) (-1666.933) (-1686.973) -- 0:01:26
899000 -- [-1670.257] (-1668.268) (-1664.481) (-1680.357) * (-1667.639) (-1666.543) [-1671.145] (-1665.939) -- 0:01:25
900000 -- (-1665.753) [-1666.734] (-1669.078) (-1675.158) * (-1666.385) (-1655.119) [-1665.664] (-1671.098) -- 0:01:24
Average standard deviation of split frequencies: 0.006641
901000 -- (-1675.633) [-1660.980] (-1683.881) (-1667.943) * [-1664.116] (-1655.216) (-1672.479) (-1685.613) -- 0:01:23
902000 -- (-1666.609) [-1664.313] (-1684.300) (-1656.250) * (-1674.365) (-1674.388) (-1660.051) [-1662.935] -- 0:01:23
903000 -- (-1675.855) (-1670.207) (-1682.306) [-1661.122] * [-1664.804] (-1677.174) (-1690.168) (-1667.668) -- 0:01:22
904000 -- (-1667.675) [-1666.521] (-1680.669) (-1682.666) * (-1665.821) [-1665.490] (-1692.055) (-1655.720) -- 0:01:21
905000 -- (-1683.622) [-1666.600] (-1675.366) (-1680.042) * (-1669.474) (-1683.448) (-1678.597) [-1663.508] -- 0:01:20
Average standard deviation of split frequencies: 0.006764
906000 -- (-1679.864) (-1668.671) [-1669.995] (-1670.891) * [-1664.303] (-1681.817) (-1679.564) (-1656.475) -- 0:01:19
907000 -- (-1666.157) [-1678.375] (-1672.087) (-1675.066) * (-1677.650) [-1663.522] (-1683.340) (-1666.182) -- 0:01:19
908000 -- (-1676.759) (-1672.914) [-1671.281] (-1677.023) * [-1666.344] (-1662.747) (-1679.740) (-1673.646) -- 0:01:18
909000 -- (-1675.168) (-1684.119) (-1673.423) [-1658.397] * (-1674.227) [-1654.532] (-1662.352) (-1680.449) -- 0:01:17
910000 -- (-1665.422) (-1661.699) [-1669.908] (-1676.781) * (-1672.677) (-1676.801) (-1671.349) [-1666.826] -- 0:01:16
Average standard deviation of split frequencies: 0.006833
911000 -- [-1661.706] (-1669.049) (-1675.484) (-1675.449) * (-1667.659) [-1661.953] (-1680.434) (-1670.942) -- 0:01:15
912000 -- (-1690.686) (-1659.975) [-1662.097] (-1661.175) * (-1686.920) [-1667.020] (-1673.285) (-1673.722) -- 0:01:14
913000 -- (-1679.019) (-1663.576) (-1669.328) [-1656.437] * (-1684.789) [-1662.402] (-1675.097) (-1656.058) -- 0:01:14
914000 -- (-1667.235) (-1676.286) (-1675.543) [-1658.898] * (-1677.471) (-1665.439) (-1681.707) [-1668.554] -- 0:01:13
915000 -- [-1664.420] (-1682.017) (-1663.054) (-1668.725) * (-1675.909) [-1673.536] (-1688.364) (-1669.047) -- 0:01:12
Average standard deviation of split frequencies: 0.006885
916000 -- (-1684.122) (-1658.310) [-1663.293] (-1673.608) * (-1675.814) (-1682.680) [-1676.342] (-1682.944) -- 0:01:11
917000 -- (-1674.485) [-1671.526] (-1666.180) (-1682.205) * (-1678.029) (-1678.529) (-1679.313) [-1659.916] -- 0:01:10
918000 -- (-1670.886) (-1674.798) (-1681.615) [-1675.842] * (-1664.312) (-1673.178) (-1671.620) [-1662.842] -- 0:01:09
919000 -- (-1676.394) [-1667.921] (-1662.716) (-1671.766) * [-1654.647] (-1666.865) (-1675.957) (-1664.217) -- 0:01:09
920000 -- (-1673.547) (-1669.673) (-1662.786) [-1656.919] * [-1662.538] (-1661.601) (-1688.277) (-1670.888) -- 0:01:08
Average standard deviation of split frequencies: 0.006656
921000 -- (-1672.442) (-1667.467) [-1658.348] (-1668.666) * [-1661.169] (-1669.223) (-1681.117) (-1668.811) -- 0:01:07
922000 -- [-1673.115] (-1675.496) (-1674.604) (-1679.148) * (-1675.192) [-1667.846] (-1671.723) (-1683.810) -- 0:01:06
923000 -- (-1679.818) [-1659.850] (-1671.349) (-1663.855) * [-1668.049] (-1664.735) (-1660.797) (-1689.794) -- 0:01:05
924000 -- (-1672.707) (-1669.421) (-1673.160) [-1656.789] * [-1674.552] (-1670.721) (-1655.101) (-1672.617) -- 0:01:04
925000 -- (-1677.479) (-1669.451) [-1649.236] (-1662.620) * (-1670.930) [-1656.848] (-1664.828) (-1671.910) -- 0:01:04
Average standard deviation of split frequencies: 0.006765
926000 -- (-1685.437) [-1667.719] (-1663.727) (-1674.773) * (-1668.430) [-1671.115] (-1663.400) (-1669.844) -- 0:01:03
927000 -- (-1673.954) (-1688.554) (-1667.056) [-1659.407] * (-1666.707) [-1673.496] (-1661.938) (-1680.488) -- 0:01:02
928000 -- (-1690.624) (-1676.937) (-1656.444) [-1654.707] * [-1651.924] (-1669.646) (-1659.402) (-1673.558) -- 0:01:01
929000 -- (-1681.131) (-1672.288) [-1658.708] (-1668.502) * [-1668.309] (-1677.215) (-1676.870) (-1658.456) -- 0:01:00
930000 -- (-1668.472) (-1672.075) [-1663.379] (-1678.917) * (-1675.349) (-1671.998) [-1676.164] (-1663.620) -- 0:00:59
Average standard deviation of split frequencies: 0.007080
931000 -- [-1668.569] (-1676.235) (-1661.749) (-1683.359) * (-1658.290) (-1667.542) (-1676.017) [-1665.904] -- 0:00:59
932000 -- (-1681.102) (-1666.891) [-1654.402] (-1685.765) * (-1661.798) [-1666.410] (-1673.317) (-1682.765) -- 0:00:58
933000 -- (-1676.443) (-1667.260) [-1662.517] (-1674.802) * [-1653.644] (-1671.527) (-1677.999) (-1672.879) -- 0:00:57
934000 -- [-1662.958] (-1666.904) (-1663.564) (-1680.613) * [-1664.122] (-1660.340) (-1658.278) (-1674.865) -- 0:00:56
935000 -- (-1664.345) (-1665.909) [-1668.728] (-1682.677) * (-1677.592) (-1664.156) [-1669.561] (-1669.396) -- 0:00:55
Average standard deviation of split frequencies: 0.007062
936000 -- (-1658.614) (-1670.380) (-1677.076) [-1672.255] * [-1661.889] (-1675.088) (-1679.275) (-1665.528) -- 0:00:54
937000 -- (-1656.885) [-1669.008] (-1675.114) (-1668.107) * (-1662.115) (-1666.151) [-1660.139] (-1672.351) -- 0:00:54
938000 -- (-1659.868) (-1677.172) (-1659.341) [-1666.758] * (-1681.270) (-1678.029) (-1683.672) [-1654.743] -- 0:00:53
939000 -- (-1705.547) (-1672.698) (-1660.641) [-1660.830] * (-1661.900) (-1672.587) (-1666.074) [-1659.597] -- 0:00:52
940000 -- (-1678.345) [-1659.390] (-1667.539) (-1685.515) * (-1665.740) (-1673.655) (-1678.040) [-1653.052] -- 0:00:51
Average standard deviation of split frequencies: 0.007161
941000 -- (-1686.446) [-1665.257] (-1662.154) (-1669.630) * (-1676.931) (-1667.432) (-1674.757) [-1656.901] -- 0:00:50
942000 -- (-1670.202) (-1677.380) (-1670.238) [-1670.753] * (-1676.025) [-1670.009] (-1669.928) (-1657.906) -- 0:00:49
943000 -- (-1668.484) (-1666.145) [-1672.316] (-1687.905) * (-1679.466) [-1662.864] (-1658.490) (-1657.648) -- 0:00:48
944000 -- (-1666.377) (-1679.300) [-1660.980] (-1677.422) * [-1658.502] (-1666.994) (-1681.039) (-1667.263) -- 0:00:48
945000 -- (-1659.985) (-1673.757) (-1673.684) [-1671.238] * (-1655.694) (-1663.701) [-1662.801] (-1679.507) -- 0:00:47
Average standard deviation of split frequencies: 0.007032
946000 -- [-1660.927] (-1673.523) (-1654.463) (-1668.483) * [-1658.556] (-1670.725) (-1664.956) (-1676.605) -- 0:00:46
947000 -- [-1663.800] (-1666.950) (-1674.834) (-1658.310) * (-1657.836) (-1683.574) [-1661.806] (-1673.095) -- 0:00:45
948000 -- [-1663.427] (-1668.727) (-1667.477) (-1659.563) * [-1659.240] (-1683.291) (-1668.518) (-1669.459) -- 0:00:44
949000 -- (-1664.049) (-1669.921) [-1672.172] (-1670.471) * (-1662.216) (-1669.794) (-1674.400) [-1652.666] -- 0:00:43
950000 -- [-1665.046] (-1668.293) (-1669.459) (-1677.760) * (-1653.872) [-1669.527] (-1674.749) (-1673.182) -- 0:00:43
Average standard deviation of split frequencies: 0.007041
951000 -- (-1674.513) (-1661.003) (-1683.402) [-1674.752] * (-1658.754) (-1684.757) (-1684.489) [-1659.845] -- 0:00:42
952000 -- (-1686.123) [-1664.426] (-1684.135) (-1676.960) * [-1664.623] (-1657.835) (-1682.679) (-1673.176) -- 0:00:41
953000 -- (-1678.917) (-1664.566) [-1664.447] (-1673.112) * (-1673.229) (-1674.853) [-1662.523] (-1670.913) -- 0:00:40
954000 -- (-1660.546) [-1666.681] (-1673.348) (-1673.232) * [-1665.795] (-1679.893) (-1664.030) (-1655.798) -- 0:00:39
955000 -- (-1674.087) [-1667.941] (-1667.748) (-1668.487) * (-1669.044) (-1679.388) (-1667.798) [-1667.662] -- 0:00:38
Average standard deviation of split frequencies: 0.007155
956000 -- (-1669.335) (-1671.164) (-1652.802) [-1664.519] * (-1662.857) (-1694.299) (-1666.743) [-1662.288] -- 0:00:37
957000 -- (-1670.966) (-1681.299) [-1655.575] (-1673.450) * (-1668.968) (-1659.323) [-1668.977] (-1678.656) -- 0:00:37
958000 -- (-1665.847) (-1665.407) [-1661.365] (-1674.796) * (-1676.769) (-1664.588) [-1663.659] (-1675.905) -- 0:00:36
959000 -- [-1678.378] (-1672.243) (-1678.758) (-1668.782) * (-1666.163) (-1664.788) [-1664.577] (-1682.453) -- 0:00:35
960000 -- (-1686.357) (-1667.662) (-1686.507) [-1659.580] * (-1664.729) (-1669.455) (-1670.082) [-1660.178] -- 0:00:34
Average standard deviation of split frequencies: 0.007023
961000 -- (-1670.379) [-1662.446] (-1664.587) (-1692.943) * (-1667.985) (-1666.291) [-1658.475] (-1682.301) -- 0:00:33
962000 -- [-1656.178] (-1679.234) (-1682.830) (-1686.228) * (-1684.290) (-1650.121) (-1659.488) [-1656.066] -- 0:00:32
963000 -- [-1659.945] (-1674.553) (-1662.300) (-1676.663) * (-1667.918) [-1660.106] (-1681.406) (-1660.002) -- 0:00:31
964000 -- [-1658.123] (-1683.943) (-1682.309) (-1661.891) * [-1654.599] (-1663.019) (-1687.419) (-1672.908) -- 0:00:31
965000 -- [-1670.142] (-1680.961) (-1664.535) (-1675.029) * (-1668.381) (-1658.866) (-1682.880) [-1666.078] -- 0:00:30
Average standard deviation of split frequencies: 0.007125
966000 -- [-1675.179] (-1681.676) (-1665.304) (-1675.171) * (-1682.934) (-1667.440) [-1657.961] (-1665.734) -- 0:00:29
967000 -- (-1671.505) (-1668.244) [-1663.641] (-1662.363) * (-1680.059) [-1667.336] (-1667.658) (-1676.261) -- 0:00:28
968000 -- (-1658.832) (-1661.704) [-1665.438] (-1671.172) * (-1674.676) (-1675.780) [-1665.124] (-1678.501) -- 0:00:27
969000 -- [-1673.922] (-1668.037) (-1673.359) (-1664.809) * (-1670.961) [-1663.914] (-1685.482) (-1667.837) -- 0:00:26
970000 -- [-1667.537] (-1671.052) (-1692.597) (-1654.305) * (-1669.699) (-1668.975) (-1662.104) [-1672.600] -- 0:00:25
Average standard deviation of split frequencies: 0.007155
971000 -- (-1662.432) (-1666.971) [-1660.460] (-1672.076) * (-1669.459) [-1662.753] (-1664.081) (-1685.438) -- 0:00:25
972000 -- (-1686.270) (-1669.788) (-1666.756) [-1662.665] * [-1665.939] (-1688.580) (-1662.561) (-1674.630) -- 0:00:24
973000 -- (-1669.401) (-1675.483) [-1659.179] (-1661.197) * (-1682.035) [-1661.996] (-1666.225) (-1675.339) -- 0:00:23
974000 -- (-1685.181) (-1685.376) [-1657.202] (-1669.627) * (-1675.927) (-1658.718) (-1678.598) [-1660.294] -- 0:00:22
975000 -- (-1671.714) (-1687.595) (-1668.687) [-1659.574] * (-1679.388) (-1668.849) (-1667.485) [-1661.027] -- 0:00:21
Average standard deviation of split frequencies: 0.007116
976000 -- (-1653.521) [-1665.474] (-1683.581) (-1668.587) * (-1662.251) (-1684.024) [-1664.624] (-1671.951) -- 0:00:20
977000 -- (-1671.749) (-1664.443) (-1668.760) [-1670.399] * [-1659.261] (-1681.264) (-1688.228) (-1667.654) -- 0:00:19
978000 -- [-1664.092] (-1664.922) (-1686.022) (-1672.679) * (-1649.915) (-1667.249) (-1683.305) [-1668.054] -- 0:00:19
979000 -- (-1677.012) [-1666.022] (-1672.792) (-1683.537) * (-1680.274) (-1667.834) (-1677.393) [-1661.978] -- 0:00:18
980000 -- [-1674.294] (-1669.125) (-1680.429) (-1669.486) * (-1684.228) [-1662.332] (-1686.539) (-1669.143) -- 0:00:17
Average standard deviation of split frequencies: 0.007050
981000 -- (-1675.886) (-1664.408) (-1679.259) [-1655.149] * (-1667.053) (-1669.166) (-1666.407) [-1674.422] -- 0:00:16
982000 -- (-1667.420) (-1679.549) [-1652.199] (-1667.264) * (-1679.685) [-1670.356] (-1669.496) (-1667.667) -- 0:00:15
983000 -- [-1670.359] (-1663.869) (-1667.444) (-1672.262) * (-1663.501) (-1667.174) (-1670.872) [-1659.925] -- 0:00:14
984000 -- (-1692.050) [-1663.002] (-1677.708) (-1680.567) * [-1669.289] (-1671.132) (-1668.789) (-1684.608) -- 0:00:13
985000 -- (-1671.050) [-1660.928] (-1670.390) (-1674.962) * [-1670.095] (-1695.976) (-1665.215) (-1668.211) -- 0:00:13
Average standard deviation of split frequencies: 0.006853
986000 -- (-1671.693) (-1684.297) [-1666.093] (-1673.434) * (-1667.039) [-1669.758] (-1682.295) (-1658.750) -- 0:00:12
987000 -- (-1680.285) (-1677.691) [-1662.696] (-1672.549) * (-1676.627) [-1666.660] (-1670.138) (-1669.581) -- 0:00:11
988000 -- (-1668.587) (-1661.856) [-1657.948] (-1670.062) * (-1672.011) (-1668.722) [-1668.710] (-1688.545) -- 0:00:10
989000 -- (-1678.917) (-1671.373) (-1665.616) [-1669.453] * (-1688.103) (-1654.020) (-1676.564) [-1670.286] -- 0:00:09
990000 -- (-1680.307) (-1675.000) [-1659.382] (-1660.610) * (-1678.715) [-1659.173] (-1683.218) (-1673.047) -- 0:00:08
Average standard deviation of split frequencies: 0.006831
991000 -- (-1668.287) (-1676.648) [-1666.111] (-1677.852) * (-1683.252) (-1664.760) (-1671.180) [-1658.849] -- 0:00:07
992000 -- [-1660.115] (-1664.364) (-1678.401) (-1678.421) * [-1665.441] (-1672.578) (-1669.615) (-1665.152) -- 0:00:06
993000 -- [-1661.082] (-1666.231) (-1678.902) (-1686.593) * (-1664.513) (-1674.236) (-1663.613) [-1660.703] -- 0:00:06
994000 -- (-1674.561) (-1670.346) (-1690.010) [-1671.487] * [-1658.459] (-1669.980) (-1666.299) (-1662.543) -- 0:00:05
995000 -- (-1669.945) (-1664.214) (-1665.254) [-1659.323] * [-1665.231] (-1665.364) (-1672.223) (-1672.406) -- 0:00:04
Average standard deviation of split frequencies: 0.006637
996000 -- (-1662.591) [-1657.835] (-1677.715) (-1668.772) * [-1667.336] (-1669.691) (-1678.437) (-1670.649) -- 0:00:03
997000 -- [-1657.769] (-1659.930) (-1687.165) (-1666.402) * (-1673.805) (-1678.090) (-1676.799) [-1654.853] -- 0:00:02
998000 -- (-1673.158) (-1671.443) [-1664.837] (-1678.427) * [-1670.106] (-1663.366) (-1707.200) (-1662.595) -- 0:00:01
999000 -- [-1662.827] (-1669.162) (-1659.452) (-1673.145) * (-1666.082) [-1656.622] (-1684.527) (-1674.912) -- 0:00:00
1000000 -- (-1668.181) [-1665.532] (-1662.695) (-1667.625) * (-1670.790) [-1655.405] (-1666.108) (-1674.733) -- 0:00:00
Average standard deviation of split frequencies: 0.006658
Analysis completed in 14 mins 32 seconds
Analysis used 871.20 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -1642.80
Likelihood of best state for "cold" chain of run 2 was -1643.16
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
63.0 % ( 58 %) Dirichlet(Revmat{all})
75.3 % ( 71 %) Slider(Revmat{all})
26.3 % ( 22 %) Dirichlet(Pi{all})
28.3 % ( 16 %) Slider(Pi{all})
82.0 % ( 73 %) Multiplier(Alpha{1,2})
68.3 % ( 40 %) Multiplier(Alpha{3})
90.5 % ( 79 %) Slider(Pinvar{all})
59.7 % ( 67 %) ExtSPR(Tau{all},V{all})
51.1 % ( 58 %) ExtTBR(Tau{all},V{all})
65.2 % ( 64 %) NNI(Tau{all},V{all})
44.0 % ( 47 %) ParsSPR(Tau{all},V{all})
27.5 % ( 17 %) Multiplier(V{all})
74.5 % ( 76 %) Nodeslider(V{all})
25.7 % ( 22 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
63.0 % ( 55 %) Dirichlet(Revmat{all})
75.7 % ( 70 %) Slider(Revmat{all})
26.2 % ( 34 %) Dirichlet(Pi{all})
27.5 % ( 27 %) Slider(Pi{all})
82.0 % ( 57 %) Multiplier(Alpha{1,2})
67.9 % ( 46 %) Multiplier(Alpha{3})
90.3 % ( 81 %) Slider(Pinvar{all})
59.6 % ( 55 %) ExtSPR(Tau{all},V{all})
50.9 % ( 54 %) ExtTBR(Tau{all},V{all})
65.7 % ( 70 %) NNI(Tau{all},V{all})
44.4 % ( 44 %) ParsSPR(Tau{all},V{all})
27.5 % ( 24 %) Multiplier(V{all})
74.6 % ( 76 %) Nodeslider(V{all})
25.8 % ( 24 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.50 0.18 0.05
2 | 166731 0.51 0.20
3 | 166507 166759 0.53
4 | 166728 166439 166836
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.50 0.19 0.05
2 | 166471 0.52 0.20
3 | 166713 166974 0.53
4 | 166412 166904 166526
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -1660.08
| 1 2 2 |
| 1 1 2 |
| 2 1 |
| 1 1 2* 1 2 1 |
| 1 2 2 1 2 1 |
| 1 1* 1 1 1 * 1 1 1 1|
| 22 2 1 2 * 1 2 2 |
| 21 22 1 1 1 1 2 11 1 |
|2 1 2 1 12 2 1 1 2 1 * 2|
|12 2 2 2 * 2 21 2 2 1 |
| 22 22 2 1 1 1 221 2 2 12 1 |
| 1 1 2 2 22 112 |
| 1 1 1 1 |
| 1 2 22 2 |
| 2 2 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -1667.02
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1653.94 -1676.30
2 -1652.62 -1682.94
--------------------------------------
TOTAL -1653.08 -1682.24
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.080077 0.000151 0.057120 0.104135 0.079325 1397.17 1449.09 1.000
r(A<->C){all} 0.078155 0.001420 0.014506 0.152099 0.072862 517.11 611.41 1.000
r(A<->G){all} 0.151943 0.001971 0.070411 0.238477 0.147858 684.65 700.80 1.000
r(A<->T){all} 0.055661 0.000522 0.013964 0.099697 0.052841 754.43 788.50 1.000
r(C<->G){all} 0.130538 0.002488 0.043501 0.229678 0.125639 590.01 626.82 1.001
r(C<->T){all} 0.483264 0.004115 0.364641 0.609576 0.483341 582.08 643.32 1.000
r(G<->T){all} 0.100439 0.001174 0.040314 0.169890 0.096759 794.96 828.03 1.000
pi(A){all} 0.271920 0.000207 0.240946 0.297693 0.271871 926.02 1147.60 1.000
pi(C){all} 0.158671 0.000142 0.136496 0.182858 0.158315 1023.34 1186.96 1.000
pi(G){all} 0.226441 0.000190 0.200935 0.253823 0.226382 897.20 1070.35 1.000
pi(T){all} 0.342968 0.000237 0.311860 0.370827 0.342813 959.85 1084.94 1.000
alpha{1,2} 0.541687 0.542870 0.000216 2.028585 0.263105 1065.04 1157.11 1.000
alpha{3} 1.768216 1.325128 0.200898 4.057239 1.503356 1436.92 1468.96 1.000
pinvar{all} 0.279626 0.028838 0.000056 0.565169 0.274081 605.50 707.70 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C321
2 -- C66
3 -- C355
4 -- C263
5 -- C327
6 -- C72
7 -- C548
8 -- C232
9 -- C78
10 -- C311
11 -- C218
12 -- C149
13 -- C316
14 -- C551
15 -- C563
16 -- C370
17 -- C223
18 -- C112
19 -- C24
20 -- C185
21 -- C431
22 -- C587
23 -- C461
24 -- C599
25 -- C388
26 -- C130
27 -- C473
28 -- C239
29 -- C136
30 -- C29
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
------------------------------------
1 -- .*****************************
2 -- .*............................
3 -- ..*...........................
4 -- ...*..........................
5 -- ....*.........................
6 -- .....*........................
7 -- ......*.......................
8 -- .......*......................
9 -- ........*.....................
10 -- .........*....................
11 -- ..........*...................
12 -- ...........*..................
13 -- ............*.................
14 -- .............*................
15 -- ..............*...............
16 -- ...............*..............
17 -- ................*.............
18 -- .................*............
19 -- ..................*...........
20 -- ...................*..........
21 -- ....................*.........
22 -- .....................*........
23 -- ......................*.......
24 -- .......................*......
25 -- ........................*.....
26 -- .........................*....
27 -- ..........................*...
28 -- ...........................*..
29 -- ............................*.
30 -- .............................*
31 -- ......**.....****...****..*..*
32 -- ...*..**.**..****...****.**..*
33 -- ........*..........*........*.
34 -- ...........*.....*............
35 -- ........*...................*.
36 -- .*.*.*************.*****.**.**
37 -- ......**.**..****...****.**..*
38 -- .*.*.*******************.*****
39 -- .*.*..**.*********..****.**..*
40 -- .*.*..************.*****.**.**
41 -- .*.*.*******************.**.**
42 -- ..................*........*..
43 -- .*.*.*************.*****.*****
44 -- .***********************.*****
45 -- ..*.*.........................
46 -- ..*.....................*.....
47 -- ......**.*...****...****..*..*
48 -- .........**...................
49 -- .........**..............*....
50 -- .*.*.*************************
51 -- .*.*********************.*****
52 -- ...*..**.**.*****...****.**..*
53 -- ......**.*...****...****.**..*
54 -- ......**.**..****...****..*..*
55 -- ..........*..............*....
56 -- ......**..*..****...****..*..*
57 -- .*..........*.................
58 -- ...*..**.***.*****..****.**..*
59 -- ......**.....****...****.**..*
60 -- .*.*.***.*********..****.**..*
61 -- .*.........**....*............
62 -- .*.***************************
63 -- ......**..*..****...****.**..*
64 -- ..*.*...................*.....
65 -- .....*..*..........*........*.
66 -- .*.*..**.**..****...****.**..*
67 -- .***.*************************
68 -- .*.*..**.***.*****..****.**..*
69 -- .*.........*.....*............
70 -- .........*...............*....
71 -- ...........**....*............
72 -- .***.*******************.*****
73 -- .*.*..**.**.*****...****.**..*
74 -- ....*...................*.....
75 -- ...*..**.*********..****.**..*
------------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
31 3002 1.000000 0.000000 1.000000 1.000000 2
32 3000 0.999334 0.000942 0.998668 1.000000 2
33 2998 0.998668 0.000942 0.998001 0.999334 2
34 2956 0.984677 0.002827 0.982678 0.986676 2
35 2907 0.968354 0.004240 0.965356 0.971352 2
36 2907 0.968354 0.001413 0.967355 0.969354 2
37 2891 0.963025 0.001413 0.962025 0.964024 2
38 2828 0.942039 0.004711 0.938708 0.945370 2
39 2756 0.918055 0.007537 0.912725 0.923384 2
40 1831 0.609927 0.008951 0.603598 0.616256 2
41 998 0.332445 0.007537 0.327115 0.337775 2
42 993 0.330779 0.009893 0.323784 0.337775 2
43 915 0.304797 0.016488 0.293138 0.316456 2
44 625 0.208195 0.007066 0.203198 0.213191 2
45 623 0.207528 0.000471 0.207195 0.207861 2
46 619 0.206196 0.004240 0.203198 0.209194 2
47 604 0.201199 0.011306 0.193205 0.209194 2
48 602 0.200533 0.000000 0.200533 0.200533 2
49 600 0.199867 0.005653 0.195869 0.203864 2
50 597 0.198867 0.016488 0.187209 0.210526 2
51 597 0.198867 0.009893 0.191872 0.205863 2
52 596 0.198534 0.007537 0.193205 0.203864 2
53 596 0.198534 0.006595 0.193871 0.203198 2
54 595 0.198201 0.000471 0.197868 0.198534 2
55 595 0.198201 0.002355 0.196536 0.199867 2
56 594 0.197868 0.003769 0.195203 0.200533 2
57 593 0.197535 0.023083 0.181213 0.213857 2
58 592 0.197202 0.000942 0.196536 0.197868 2
59 588 0.195869 0.000000 0.195869 0.195869 2
60 584 0.194537 0.006595 0.189873 0.199201 2
61 583 0.194204 0.008951 0.187875 0.200533 2
62 580 0.193205 0.020728 0.178548 0.207861 2
63 580 0.193205 0.005653 0.189207 0.197202 2
64 578 0.192538 0.004711 0.189207 0.195869 2
65 576 0.191872 0.001884 0.190540 0.193205 2
66 574 0.191206 0.005653 0.187209 0.195203 2
67 572 0.190540 0.026381 0.171885 0.209194 2
68 569 0.189540 0.012719 0.180546 0.198534 2
69 568 0.189207 0.005653 0.185210 0.193205 2
70 564 0.187875 0.000942 0.187209 0.188541 2
71 563 0.187542 0.007066 0.182545 0.192538 2
72 558 0.185876 0.017901 0.173218 0.198534 2
73 558 0.185876 0.001884 0.184544 0.187209 2
74 548 0.182545 0.001884 0.181213 0.183877 2
75 545 0.181546 0.004240 0.178548 0.184544 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.000647 0.000000 0.000000 0.001931 0.000447 1.000 2
length{all}[2] 0.003213 0.000002 0.000697 0.006060 0.003006 1.000 2
length{all}[3] 0.000647 0.000000 0.000000 0.001885 0.000457 1.000 2
length{all}[4] 0.000677 0.000000 0.000000 0.002058 0.000478 1.000 2
length{all}[5] 0.000628 0.000000 0.000000 0.001923 0.000434 1.000 2
length{all}[6] 0.016806 0.000021 0.008954 0.026203 0.016393 1.000 2
length{all}[7] 0.000646 0.000000 0.000000 0.001926 0.000456 1.000 2
length{all}[8] 0.000637 0.000000 0.000000 0.001949 0.000445 1.000 2
length{all}[9] 0.001288 0.000001 0.000066 0.003118 0.001065 1.000 2
length{all}[10] 0.000643 0.000000 0.000000 0.001989 0.000431 1.000 2
length{all}[11] 0.005133 0.000004 0.001865 0.008955 0.004866 1.002 2
length{all}[12] 0.000662 0.000000 0.000001 0.002023 0.000451 1.000 2
length{all}[13] 0.000646 0.000000 0.000000 0.001967 0.000442 1.000 2
length{all}[14] 0.000652 0.000000 0.000000 0.001961 0.000454 1.000 2
length{all}[15] 0.000656 0.000000 0.000000 0.002038 0.000438 1.000 2
length{all}[16] 0.001311 0.000001 0.000076 0.003166 0.001077 1.000 2
length{all}[17] 0.000637 0.000000 0.000000 0.001939 0.000448 1.001 2
length{all}[18] 0.000650 0.000000 0.000000 0.001924 0.000437 1.001 2
length{all}[19] 0.001296 0.000001 0.000027 0.003035 0.001104 1.000 2
length{all}[20] 0.003163 0.000003 0.000369 0.006533 0.002921 1.000 2
length{all}[21] 0.001333 0.000001 0.000028 0.003224 0.001099 1.000 2
length{all}[22] 0.000636 0.000000 0.000000 0.001882 0.000439 1.000 2
length{all}[23] 0.000625 0.000000 0.000000 0.001868 0.000441 1.001 2
length{all}[24] 0.000631 0.000000 0.000000 0.001880 0.000431 1.000 2
length{all}[25] 0.000653 0.000000 0.000000 0.001970 0.000432 1.000 2
length{all}[26] 0.001306 0.000001 0.000013 0.003115 0.001100 1.001 2
length{all}[27] 0.001270 0.000001 0.000048 0.003006 0.001063 1.000 2
length{all}[28] 0.001901 0.000001 0.000195 0.004122 0.001684 1.000 2
length{all}[29] 0.000631 0.000000 0.000000 0.001850 0.000445 1.000 2
length{all}[30] 0.000637 0.000000 0.000000 0.001906 0.000459 1.000 2
length{all}[31] 0.001935 0.000001 0.000159 0.004219 0.001726 1.000 2
length{all}[32] 0.001994 0.000001 0.000178 0.004291 0.001770 1.000 2
length{all}[33] 0.003875 0.000003 0.000851 0.007232 0.003603 1.001 2
length{all}[34] 0.001285 0.000001 0.000011 0.003052 0.001083 1.000 2
length{all}[35] 0.001987 0.000002 0.000020 0.004591 0.001715 1.000 2
length{all}[36] 0.001955 0.000002 0.000085 0.004405 0.001693 1.000 2
length{all}[37] 0.001309 0.000001 0.000026 0.003080 0.001105 1.000 2
length{all}[38] 0.001299 0.000001 0.000027 0.003124 0.001069 1.000 2
length{all}[39] 0.001957 0.000002 0.000063 0.004490 0.001703 1.000 2
length{all}[40] 0.001769 0.000002 0.000000 0.004286 0.001512 1.001 2
length{all}[41] 0.000681 0.000000 0.000000 0.002011 0.000468 0.999 2
length{all}[42] 0.000691 0.000000 0.000003 0.002125 0.000479 1.001 2
length{all}[43] 0.000687 0.000000 0.000003 0.001954 0.000455 0.999 2
length{all}[44] 0.000642 0.000000 0.000000 0.001872 0.000429 1.001 2
length{all}[45] 0.000690 0.000001 0.000002 0.002113 0.000432 1.001 2
length{all}[46] 0.000657 0.000000 0.000000 0.002031 0.000479 1.003 2
length{all}[47] 0.000591 0.000000 0.000001 0.001786 0.000414 0.999 2
length{all}[48] 0.000656 0.000000 0.000001 0.001922 0.000450 0.999 2
length{all}[49] 0.000653 0.000000 0.000002 0.001977 0.000452 0.999 2
length{all}[50] 0.000655 0.000000 0.000001 0.001831 0.000496 0.998 2
length{all}[51] 0.000686 0.000001 0.000000 0.002102 0.000451 0.998 2
length{all}[52] 0.000631 0.000000 0.000001 0.001812 0.000450 0.999 2
length{all}[53] 0.000660 0.000000 0.000000 0.001824 0.000470 0.998 2
length{all}[54] 0.000611 0.000000 0.000001 0.001737 0.000401 0.998 2
length{all}[55] 0.000636 0.000000 0.000001 0.001819 0.000453 0.998 2
length{all}[56] 0.000680 0.000000 0.000001 0.001945 0.000518 0.999 2
length{all}[57] 0.000601 0.000000 0.000001 0.001748 0.000415 1.000 2
length{all}[58] 0.000634 0.000000 0.000000 0.001782 0.000460 1.000 2
length{all}[59] 0.000640 0.000000 0.000001 0.001973 0.000436 0.998 2
length{all}[60] 0.001041 0.000001 0.000000 0.003104 0.000785 1.002 2
length{all}[61] 0.000632 0.000000 0.000002 0.001892 0.000434 1.001 2
length{all}[62] 0.000622 0.000000 0.000001 0.001912 0.000411 0.998 2
length{all}[63] 0.000610 0.000000 0.000001 0.001920 0.000398 0.998 2
length{all}[64] 0.000707 0.000001 0.000000 0.002266 0.000494 1.001 2
length{all}[65] 0.001254 0.000001 0.000000 0.003492 0.000945 0.998 2
length{all}[66] 0.000662 0.000000 0.000000 0.002052 0.000439 0.998 2
length{all}[67] 0.000664 0.000001 0.000000 0.002187 0.000427 0.999 2
length{all}[68] 0.000669 0.000000 0.000003 0.001930 0.000467 0.998 2
length{all}[69] 0.000624 0.000000 0.000000 0.001836 0.000445 0.999 2
length{all}[70] 0.000615 0.000000 0.000002 0.001740 0.000423 1.001 2
length{all}[71] 0.000622 0.000000 0.000001 0.001962 0.000412 0.998 2
length{all}[72] 0.000687 0.000001 0.000001 0.002009 0.000438 0.998 2
length{all}[73] 0.000678 0.000000 0.000003 0.001993 0.000466 0.999 2
length{all}[74] 0.000625 0.000000 0.000002 0.002088 0.000430 0.999 2
length{all}[75] 0.000611 0.000000 0.000000 0.001801 0.000462 0.998 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.006658
Maximum standard deviation of split frequencies = 0.026381
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.003
Clade credibility values:
/--------------------------------------------------------------------- C321 (1)
|
|--------------------------------------------------------------------- C355 (3)
|
|--------------------------------------------------------------------- C327 (5)
|
|--------------------------------------------------------------------- C388 (25)
|
| /---------------------------------- C66 (2)
| |
| | /-------------------------- C263 (4)
| | |
| | | /--------- C548 (7)
| | | |
| | | |--------- C232 (8)
| | | |
| | | |--------- C551 (14)
| | | |
| | | |--------- C563 (15)
| | | |
| | | |--------- C370 (16)
| |--100--+ |
| | | |--------- C223 (17)
| | | /--100--+
| | | | |--------- C431 (21)
| | | | |
| | | | |--------- C587 (22)
+ /---92---+ | | |
| | | | | |--------- C461 (23)
| | | | | |
| | | | | |--------- C599 (24)
| | | | | |
| | | \---96---+ |--------- C473 (27)
| | | | |
| | | | \--------- C29 (30)
| | | |
| | | |----------------- C311 (10)
| | | |
| | | |----------------- C218 (11)
| /---61---+ | |
| | | | \----------------- C130 (26)
| | | |
| | | | /--------- C149 (12)
| | | |-----------98-----------+
| | | | \--------- C112 (18)
| | | |
| | | \---------------------------------- C316 (13)
| /---97--+ |
| | | | /--------- C78 (9)
| | | | /---97--+
| | | | | \--------- C136 (29)
| | | \-----------100-----------+
| | | \----------------- C185 (20)
\---94---+ |
| \---------------------------------------------------- C72 (6)
|
|------------------------------------------------------------ C24 (19)
|
\------------------------------------------------------------ C239 (28)
Phylogram (based on average branch lengths):
/-- C321 (1)
|
|-- C355 (3)
|
|-- C327 (5)
|
|-- C388 (25)
|
| /----------- C66 (2)
| |
| | /- C263 (4)
| | |
| | | /-- C548 (7)
| | | |
| | | |-- C232 (8)
| | | |
| | | |-- C551 (14)
| | | |
| | | |-- C563 (15)
| | | |
| | | |---- C370 (16)
| |------+ |
| | | |-- C223 (17)
| | | /-----+
| | | | |---- C431 (21)
| | | | |
| | | | |-- C587 (22)
+ /-----+ | | |
| | | | | |-- C461 (23)
| | | | | |
| | | | | |-- C599 (24)
| | | | | |
| | | \---+ |---- C473 (27)
| | | | |
| | | | \-- C29 (30)
| | | |
| | | |- C311 (10)
| | | |
| | | |------------------ C218 (11)
| /-----+ | |
| | | | \---- C130 (26)
| | | |
| | | | /-- C149 (12)
| | | |---+
| | | | \-- C112 (18)
| | | |
| | | \-- C316 (13)
| /-----+ |
| | | | /--- C78 (9)
| | | | /------+
| | | | | \- C136 (29)
| | | \------------+
| | | \----------- C185 (20)
\---+ |
| \------------------------------------------------------------- C72 (6)
|
|---- C24 (19)
|
\------ C239 (28)
|-----------------| 0.005 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3002 trees sampled):
50 % credible set contains 1501 trees
90 % credible set contains 2702 trees
95 % credible set contains 2852 trees
99 % credible set contains 2972 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Thu Nov 17 16:37:11 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/LZW_nsp13_VIPR_ALG4_672096717_19732_20634_1_2012_02_China_Unknown_PEDV.result--
-- Starting log on Fri Nov 18 06:35:49 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/LZW_nsp13_VIPR_ALG4_672096717_19732_20634_1_2012_02_China_Unknown_PEDV.result/original_alignment/codeml,LZW_nsp13_VIPR_ALG4_672096717_19732_20634_1_2012_02_China_Unknown_PEDV.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C551 903 sites
reading seq# 2 C370 903 sites
reading seq# 3 C563 903 sites
reading seq# 4 C218 903 sites
reading seq# 5 C112 903 sites
reading seq# 6 C223 903 sites
reading seq# 7 C24 903 sites
reading seq# 8 C316 903 sites
reading seq# 9 C239 903 sites
reading seq#10 C185 903 sites
reading seq#11 C66 903 sites
reading seq#12 C321 903 sites
reading seq#13 C355 903 sites
reading seq#14 C431 903 sites
reading seq#15 C587 903 sites
reading seq#16 C327 903 sites
reading seq#17 C263 903 sites
reading seq#18 C72 903 sites
reading seq#19 C599 903 sites
reading seq#20 C461 903 sites
reading seq#21 C232 903 sites
reading seq#22 C548 903 sites
reading seq#23 C130 903 sites
reading seq#24 C473 903 sites
reading seq#25 C388 903 sites
reading seq#26 C311 903 sites
reading seq#27 C78 903 sites
reading seq#28 C29 903 sites
reading seq#29 C136 903 sites
reading seq#30 C149 903 sitesns = 30 ls = 903
Reading sequences, sequential format..
Reading seq # 1: C551
Reading seq # 2: C370
Reading seq # 3: C563
Reading seq # 4: C218
Reading seq # 5: C112
Reading seq # 6: C223
Reading seq # 7: C24
Reading seq # 8: C316
Reading seq # 9: C239
Reading seq #10: C185
Reading seq #11: C66
Reading seq #12: C321
Reading seq #13: C355
Reading seq #14: C431
Reading seq #15: C587
Reading seq #16: C327
Reading seq #17: C263
Reading seq #18: C72
Reading seq #19: C599
Reading seq #20: C461
Reading seq #21: C232
Reading seq #22: C548
Reading seq #23: C130
Reading seq #24: C473
Reading seq #25: C388
Reading seq #26: C311
Reading seq #27: C78
Reading seq #28: C29
Reading seq #29: C136
Reading seq #30: C149
Sites with gaps or missing data are removed.
399 ambiguity characters in seq. 18
133 sites are removed. 161 162 163 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 293 294 295 296 297 298 299 300 301
Sequences read..
Counting site patterns.. 0:00
Compressing, 90 patterns at 168 / 168 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 90 patterns at 168 / 168 sites (100.0%), 0:00
Counting codons..
3480 bytes for distance
87840 bytes for conP
7920 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(12, 13, 16, 25, ((((11, (17, ((22, 21, 1, 3, 2, 6, 14, 15, 20, 19, 24, 28), 26, 4, 23)), (30, 5), 8), ((27, 29), 10)), 18), 7, 9)); MP score: 41
483120 bytes for conP, adjusted
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
36
0.043974 0.039569 0.079171 0.081937 0.012249 0.070550 0.033781 0.107818 0.032411 0.084565 0.056415 0.042366 0.099673 0.106945 0.027085 0.082508 0.086794 0.098354 0.031835 0.109173 0.010892 0.012838 0.055284 0.057985 0.106019 0.012032 0.059413 0.042208 0.081188 0.071447 0.015754 0.101371 0.018538 0.089796 0.033192 0.024018 0.041318 0.087273 0.098563 0.068014 0.300000 0.685550 0.318731
ntime & nrate & np: 40 2 43
Bounds (np=43):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 12.576924
np = 43
lnL0 = -1236.409090
Iterating by ming2
Initial: fx= 1236.409090
x= 0.04397 0.03957 0.07917 0.08194 0.01225 0.07055 0.03378 0.10782 0.03241 0.08457 0.05641 0.04237 0.09967 0.10695 0.02709 0.08251 0.08679 0.09835 0.03183 0.10917 0.01089 0.01284 0.05528 0.05799 0.10602 0.01203 0.05941 0.04221 0.08119 0.07145 0.01575 0.10137 0.01854 0.08980 0.03319 0.02402 0.04132 0.08727 0.09856 0.06801 0.30000 0.68555 0.31873
1 h-m-p 0.0000 0.0001 732.4320 ++ 1189.268556 m 0.0001 48 | 1/43
2 h-m-p 0.0000 0.0000 3197.6436 ++ 1185.263054 m 0.0000 94 | 2/43
3 h-m-p 0.0000 0.0000 15355.8950 ++ 1182.662717 m 0.0000 140 | 3/43
4 h-m-p 0.0000 0.0000 2604.8637 ++ 1173.553518 m 0.0000 186 | 4/43
5 h-m-p 0.0000 0.0001 1049.9195 ++ 1150.175573 m 0.0001 232 | 5/43
6 h-m-p 0.0000 0.0000 909.4790 ++ 1141.952522 m 0.0000 278 | 6/43
7 h-m-p 0.0000 0.0001 540.3960 ++ 1131.905081 m 0.0001 324 | 7/43
8 h-m-p 0.0000 0.0000 480.9269 ++ 1129.719916 m 0.0000 370 | 8/43
9 h-m-p 0.0000 0.0000 4077.3943 ++ 1118.028062 m 0.0000 416 | 9/43
10 h-m-p 0.0000 0.0000 5964.5336 ++ 1113.863531 m 0.0000 462 | 10/43
11 h-m-p 0.0000 0.0000 841.5780 ++ 1111.683136 m 0.0000 508 | 11/43
12 h-m-p 0.0000 0.0001 559.1612 ++ 1098.385837 m 0.0001 554 | 12/43
13 h-m-p 0.0000 0.0000 15934.8455 ++ 1097.239009 m 0.0000 600 | 13/43
14 h-m-p 0.0000 0.0000 12589328.1253 ++ 1081.391368 m 0.0000 646 | 14/43
15 h-m-p 0.0000 0.0000 4120.1665 ++ 1074.033860 m 0.0000 692 | 15/43
16 h-m-p 0.0000 0.0000 13404.6325 ++ 1072.107726 m 0.0000 738 | 16/43
17 h-m-p 0.0000 0.0000 1832.8790 ++ 1071.809576 m 0.0000 784 | 17/43
18 h-m-p 0.0000 0.0000 4750.0615 ++ 1069.481300 m 0.0000 830 | 18/43
19 h-m-p 0.0000 0.0000 1070.6269 ++ 1062.777273 m 0.0000 876 | 19/43
20 h-m-p 0.0000 0.0000 2476.5231 ++ 1062.101873 m 0.0000 922 | 20/43
21 h-m-p 0.0000 0.0000 856.6766 ++ 1061.875604 m 0.0000 968 | 21/43
22 h-m-p 0.0000 0.0000 635.4943 ++ 1060.855151 m 0.0000 1014 | 22/43
23 h-m-p 0.0000 0.0000 318.2326 ++ 1060.629899 m 0.0000 1060 | 23/43
24 h-m-p 0.0000 0.0006 221.2657 ++++ 1036.938497 m 0.0006 1108 | 24/43
25 h-m-p 0.0001 0.0003 156.5842 +YYYCYYCCC 1030.693412 8 0.0003 1167 | 24/43
26 h-m-p 0.0000 0.0002 250.5139 +YYCYYCCC 1023.206486 7 0.0002 1224 | 24/43
27 h-m-p 0.0000 0.0000 769.9133 +YYYCCC 1021.529148 5 0.0000 1278 | 24/43
28 h-m-p 0.0000 0.0001 350.7577 +YYYCCC 1020.069541 5 0.0000 1332 | 24/43
29 h-m-p 0.0001 0.0006 220.9604 +CYYYYC 1010.710980 5 0.0004 1385 | 23/43
30 h-m-p 0.0000 0.0000 2972.7233 YCYCCC 1009.153380 5 0.0000 1439 | 23/43
31 h-m-p 0.0001 0.0003 93.4169 +YYCCCC 1007.992992 5 0.0002 1494 | 23/43
32 h-m-p 0.0000 0.0002 80.5749 YCYCCC 1007.659596 5 0.0001 1548 | 23/43
33 h-m-p 0.0005 0.0023 12.7977 +YYCCCC 1005.934010 5 0.0015 1603 | 23/43
34 h-m-p 0.0002 0.0013 87.7354 +YYYYYCCCCC 998.842347 9 0.0009 1663 | 23/43
35 h-m-p 0.0022 0.0111 4.4560 +YYCCCC 996.224610 5 0.0070 1718 | 23/43
36 h-m-p 0.0026 0.0131 12.1144 +YYCCC 990.994498 4 0.0087 1771 | 23/43
37 h-m-p 0.0064 0.0321 4.6807 +YCCCCC 980.365137 5 0.0261 1827 | 23/43
38 h-m-p 0.0022 0.0112 3.7900 +YYCCC 978.237528 4 0.0076 1880 | 23/43
39 h-m-p 0.0059 0.0296 3.8772 +YCYCCC 973.548902 5 0.0178 1935 | 23/43
40 h-m-p 0.0180 0.0902 1.6805 +YYYCCC 965.919753 5 0.0680 1989 | 23/43
41 h-m-p 0.0231 0.1154 0.8871 +YYCCCC 962.640172 5 0.0705 2044 | 23/43
42 h-m-p 0.0494 0.2471 0.1875 +YYCCCC 960.715852 5 0.1561 2119 | 23/43
43 h-m-p 0.0212 0.1060 0.9782 YCCCC 958.498422 4 0.0504 2192 | 23/43
44 h-m-p 0.6007 3.0033 0.0806 YCCCC 955.326613 4 1.3515 2265 | 23/43
45 h-m-p 0.2196 1.0979 0.1492 YCCC 954.432276 3 0.4119 2336 | 23/43
46 h-m-p 0.7082 3.6374 0.0868 YCCCC 953.343797 4 1.3890 2409 | 23/43
47 h-m-p 0.6429 3.2144 0.1798 YCCCC 951.033716 4 1.5261 2482 | 23/43
48 h-m-p 0.3516 1.7582 0.0817 ++ 950.349795 m 1.7582 2548 | 24/43
49 h-m-p 0.6303 3.1516 0.2146 CYC 949.808568 2 0.7214 2617 | 24/43
50 h-m-p 1.0324 5.1622 0.0626 CYCCC 949.331238 4 1.7076 2689 | 24/43
51 h-m-p 1.5737 7.8684 0.0232 CYC 949.203808 2 1.5121 2757 | 24/43
52 h-m-p 1.6000 8.0000 0.0084 CYC 949.115095 2 1.7461 2825 | 24/43
53 h-m-p 0.3278 8.0000 0.0447 +YCCC 948.931177 3 2.8122 2896 | 24/43
54 h-m-p 1.6000 8.0000 0.0405 CCC 948.775661 2 2.1729 2965 | 24/43
55 h-m-p 1.6000 8.0000 0.0215 CCC 948.693902 2 1.6309 3034 | 24/43
56 h-m-p 1.1597 8.0000 0.0303 +CYC 948.563467 2 4.8647 3103 | 24/43
57 h-m-p 1.6000 8.0000 0.0554 CCC 948.482817 2 1.7579 3172 | 24/43
58 h-m-p 1.6000 8.0000 0.0028 CC 948.465863 1 1.6537 3239 | 24/43
59 h-m-p 0.4447 8.0000 0.0104 +CC 948.461013 1 1.6309 3307 | 24/43
60 h-m-p 1.6000 8.0000 0.0035 CC 948.460068 1 1.8360 3374 | 24/43
61 h-m-p 1.6000 8.0000 0.0026 YC 948.459282 1 3.1153 3440 | 24/43
62 h-m-p 1.6000 8.0000 0.0019 CC 948.458813 1 2.4329 3507 | 24/43
63 h-m-p 1.6000 8.0000 0.0003 C 948.458649 0 1.7667 3572 | 24/43
64 h-m-p 0.6766 8.0000 0.0008 +YC 948.458556 1 1.9267 3639 | 24/43
65 h-m-p 1.6000 8.0000 0.0005 YC 948.458495 1 3.5026 3705 | 24/43
66 h-m-p 1.6000 8.0000 0.0009 C 948.458448 0 2.3620 3770 | 24/43
67 h-m-p 1.6000 8.0000 0.0001 C 948.458431 0 1.9198 3835 | 24/43
68 h-m-p 1.0460 8.0000 0.0001 C 948.458427 0 1.3076 3900 | 24/43
69 h-m-p 1.6000 8.0000 0.0000 C 948.458426 0 2.0323 3965 | 24/43
70 h-m-p 1.6000 8.0000 0.0000 C 948.458426 0 2.1452 4030 | 24/43
71 h-m-p 0.4817 8.0000 0.0000 +Y 948.458426 0 1.4482 4096 | 24/43
72 h-m-p 1.6000 8.0000 0.0000 C 948.458426 0 1.3713 4161 | 24/43
73 h-m-p 1.6000 8.0000 0.0000 Y 948.458426 0 1.2102 4226 | 24/43
74 h-m-p 1.6000 8.0000 0.0000 ---C 948.458426 0 0.0063 4294
Out..
lnL = -948.458426
4295 lfun, 12885 eigenQcodon, 343600 P(t)
end of tree file.
Time used: 2:18
Model 2: PositiveSelection
TREE # 1
(12, 13, 16, 25, ((((11, (17, ((22, 21, 1, 3, 2, 6, 14, 15, 20, 19, 24, 28), 26, 4, 23)), (30, 5), 8), ((27, 29), 10)), 18), 7, 9)); MP score: 41
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
36
0.022228 0.076844 0.050915 0.082780 0.055813 0.065355 0.097961 0.102443 0.024311 0.023358 0.100638 0.088824 0.089720 0.060546 0.079531 0.023207 0.038418 0.091158 0.083066 0.028833 0.059451 0.031818 0.075521 0.098182 0.055929 0.061010 0.032351 0.096736 0.106713 0.063596 0.047535 0.104130 0.070585 0.058841 0.032614 0.028646 0.100085 0.085367 0.062123 0.105992 2.034739 1.772011 0.507396 0.440370 1.451541
ntime & nrate & np: 40 3 45
Bounds (np=45):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 5.638630
np = 45
lnL0 = -1261.176585
Iterating by ming2
Initial: fx= 1261.176585
x= 0.02223 0.07684 0.05092 0.08278 0.05581 0.06535 0.09796 0.10244 0.02431 0.02336 0.10064 0.08882 0.08972 0.06055 0.07953 0.02321 0.03842 0.09116 0.08307 0.02883 0.05945 0.03182 0.07552 0.09818 0.05593 0.06101 0.03235 0.09674 0.10671 0.06360 0.04753 0.10413 0.07059 0.05884 0.03261 0.02865 0.10008 0.08537 0.06212 0.10599 2.03474 1.77201 0.50740 0.44037 1.45154
1 h-m-p 0.0000 0.0002 772.3282 +++ 1162.607939 m 0.0002 51 | 1/45
2 h-m-p 0.0000 0.0000 9925.3717 ++ 1158.314073 m 0.0000 99 | 2/45
3 h-m-p 0.0000 0.0000 155053.4759 ++ 1136.983668 m 0.0000 147 | 3/45
4 h-m-p 0.0000 0.0000 3959.2814 ++ 1125.579221 m 0.0000 195 | 4/45
5 h-m-p 0.0000 0.0000 1859.3746 ++ 1123.059584 m 0.0000 243 | 5/45
6 h-m-p 0.0000 0.0000 3201.8007 ++ 1106.955793 m 0.0000 291 | 6/45
7 h-m-p 0.0000 0.0000 34450.9114 ++ 1082.477392 m 0.0000 339 | 7/45
8 h-m-p 0.0000 0.0000 43120.4598 ++ 1074.409777 m 0.0000 387 | 8/45
9 h-m-p 0.0000 0.0000 2475.5062 ++ 1062.428362 m 0.0000 435 | 9/45
10 h-m-p 0.0000 0.0000 11457.2468 ++ 1054.771780 m 0.0000 483 | 10/45
11 h-m-p 0.0000 0.0000 62022.4753 ++ 1052.550699 m 0.0000 531 | 11/45
12 h-m-p 0.0000 0.0000 3072.6833 ++ 1051.692290 m 0.0000 579 | 12/45
13 h-m-p 0.0000 0.0000 15634.9496 ++ 1049.783389 m 0.0000 627 | 13/45
14 h-m-p 0.0000 0.0000 10823.2562 ++ 1046.064278 m 0.0000 675 | 14/45
15 h-m-p 0.0000 0.0000 9586.9658 ++ 1029.951565 m 0.0000 723 | 15/45
16 h-m-p 0.0000 0.0000 155036.6092 ++ 1028.529972 m 0.0000 771 | 16/45
17 h-m-p 0.0000 0.0000 7957.0105 ++ 1025.154037 m 0.0000 819 | 17/45
18 h-m-p 0.0000 0.0000 5222.7130 ++ 1022.111580 m 0.0000 867 | 18/45
19 h-m-p 0.0000 0.0000 3803.0381 ++ 1021.638903 m 0.0000 915 | 19/45
20 h-m-p 0.0000 0.0000 2140.2115 ++ 1016.801861 m 0.0000 963 | 20/45
21 h-m-p 0.0000 0.0000 2944.5844 ++ 1014.174396 m 0.0000 1011 | 21/45
22 h-m-p 0.0000 0.0000 1060.9911 ++ 1009.685070 m 0.0000 1059 | 22/45
23 h-m-p 0.0000 0.0000 410.2031 ++ 1009.370207 m 0.0000 1107 | 23/45
24 h-m-p 0.0000 0.0005 177.6059 +++ 993.650853 m 0.0005 1156 | 23/45
25 h-m-p 0.0000 0.0000 954.7300 +YYYYCCCCC 987.929263 8 0.0000 1217 | 23/45
26 h-m-p 0.0000 0.0001 325.2012 +YYCCCC 985.928864 5 0.0000 1274 | 23/45
27 h-m-p 0.0000 0.0001 292.4832 +YCYCCC 984.820870 5 0.0000 1331 | 23/45
28 h-m-p 0.0000 0.0001 194.0684 +YYCCCC 983.453156 5 0.0001 1388 | 23/45
29 h-m-p 0.0000 0.0001 433.2379 YCCCC 982.704284 4 0.0000 1443 | 23/45
30 h-m-p 0.0000 0.0001 151.4425 YCCCC 982.303641 4 0.0000 1498 | 23/45
31 h-m-p 0.0002 0.0042 38.1090 ++YYCC 977.948244 3 0.0020 1552 | 23/45
32 h-m-p 0.0006 0.0031 28.9336 +YYCYCC 974.090489 5 0.0021 1608 | 23/45
33 h-m-p 0.0002 0.0012 37.2658 +YCYCCC 972.967312 5 0.0007 1665 | 23/45
34 h-m-p 0.0001 0.0007 59.9748 YCCCC 972.431760 4 0.0003 1720 | 23/45
35 h-m-p 0.0001 0.0007 65.0525 YCCCC 971.893537 4 0.0003 1775 | 23/45
36 h-m-p 0.0010 0.0070 21.4430 +YCCCC 971.077039 4 0.0027 1831 | 23/45
37 h-m-p 0.0023 0.0252 24.8718 ++ 963.441012 m 0.0252 1879 | 24/45
38 h-m-p 0.0049 0.0247 18.3111 +YYYYYC 958.556878 5 0.0194 1933 | 24/45
39 h-m-p 0.0024 0.0121 18.4687 +YYCCC 956.748560 4 0.0091 1988 | 24/45
40 h-m-p 0.0481 0.2404 0.9011 YCCCC 955.944857 4 0.1167 2043 | 23/45
41 h-m-p 0.0661 1.1192 1.5903 +CYCC 953.785918 3 0.2908 2118 | 23/45
42 h-m-p 0.0931 0.4656 2.3258 +YCCC 952.527430 3 0.3134 2172 | 23/45
43 h-m-p 0.3672 1.8361 0.6517 CCC 952.210736 2 0.4112 2224 | 23/45
44 h-m-p 0.0006 0.0031 303.5600 -----------.. | 23/45
45 h-m-p 0.0000 0.0002 20622.8962 -YYCYYYC 948.300119 6 0.0000 2360 | 23/45
46 h-m-p 0.0000 0.0002 73.1626 CYCCC 948.117941 4 0.0001 2415 | 23/45
47 h-m-p 0.0001 0.0008 34.5398 CC 948.048115 1 0.0001 2465 | 23/45
48 h-m-p 0.0001 0.0012 36.6856 YC 948.023498 1 0.0001 2514 | 23/45
49 h-m-p 0.0002 0.0032 13.3240 YC 948.017979 1 0.0001 2563 | 23/45
50 h-m-p 0.0003 0.0114 3.5172 YC 948.016823 1 0.0002 2612 | 23/45
51 h-m-p 0.0001 0.0123 8.3581 CC 948.015412 1 0.0001 2662 | 23/45
52 h-m-p 0.0002 0.0099 5.1509 YC 948.014937 1 0.0001 2711 | 23/45
53 h-m-p 0.0002 0.0157 1.9689 YC 948.014774 1 0.0001 2760 | 23/45
54 h-m-p 0.0003 0.1439 1.6268 +YC 948.013324 1 0.0021 2810 | 23/45
55 h-m-p 0.0001 0.0097 32.8067 +YC 948.009377 1 0.0003 2860 | 23/45
56 h-m-p 0.0001 0.0034 103.6593 YC 948.000660 1 0.0002 2909 | 23/45
57 h-m-p 0.0002 0.0048 125.5902 YC 947.986113 1 0.0003 2958 | 23/45
58 h-m-p 0.0001 0.0015 258.7076 YC 947.977045 1 0.0001 3007 | 23/45
59 h-m-p 0.0004 0.0128 59.6477 +YCC 947.946461 2 0.0012 3059 | 23/45
60 h-m-p 0.0002 0.0036 418.9262 CC 947.919222 1 0.0002 3109 | 23/45
61 h-m-p 0.0026 0.0132 3.1039 --YC 947.919146 1 0.0001 3160 | 23/45
62 h-m-p 0.0002 0.0299 0.9439 C 947.919129 0 0.0001 3208 | 23/45
63 h-m-p 0.0078 3.9062 0.4774 ++YC 947.911595 1 0.1037 3281 | 23/45
64 h-m-p 0.0001 0.0093 489.7902 +CCC 947.864769 2 0.0006 3356 | 23/45
65 h-m-p 0.7380 8.0000 0.4004 YCCC 947.803323 3 1.3932 3409 | 23/45
66 h-m-p 1.6000 8.0000 0.0392 YC 947.801207 1 0.9313 3480 | 23/45
67 h-m-p 1.6000 8.0000 0.0203 YC 947.801054 1 1.1581 3551 | 23/45
68 h-m-p 1.6000 8.0000 0.0110 ++ 947.800653 m 8.0000 3621 | 23/45
69 h-m-p 1.0878 8.0000 0.0806 +YCC 947.797928 2 5.6255 3695 | 23/45
70 h-m-p 1.6000 8.0000 0.1245 CC 947.796869 1 1.9410 3767 | 23/45
71 h-m-p 1.6000 8.0000 0.0314 YC 947.796225 1 1.1780 3838 | 23/45
72 h-m-p 0.0973 8.0000 0.3800 +YC 947.795184 1 0.8389 3910 | 23/45
73 h-m-p 1.4577 8.0000 0.2187 YY 947.794637 1 1.3233 3981 | 23/45
74 h-m-p 1.6000 8.0000 0.0915 CY 947.794093 1 1.2562 4053 | 23/45
75 h-m-p 0.3827 8.0000 0.3005 +YYC 947.793563 2 1.2705 4126 | 23/45
76 h-m-p 1.6000 8.0000 0.1281 YC 947.793202 1 2.9872 4197 | 23/45
77 h-m-p 1.6000 8.0000 0.1787 Y 947.793040 0 1.1823 4267 | 23/45
78 h-m-p 1.6000 8.0000 0.0651 C 947.792964 0 0.5817 4337 | 23/45
79 h-m-p 0.2029 8.0000 0.1866 +YC 947.792888 1 1.5688 4409 | 23/45
80 h-m-p 1.6000 8.0000 0.1061 Y 947.792829 0 2.7608 4479 | 23/45
81 h-m-p 1.6000 8.0000 0.0581 C 947.792804 0 2.1025 4549 | 23/45
82 h-m-p 1.6000 8.0000 0.0264 +Y 947.792762 0 4.6595 4620 | 23/45
83 h-m-p 0.3048 8.0000 0.4042 +CC 947.792598 1 2.0069 4693 | 23/45
84 h-m-p 1.6000 8.0000 0.4281 YC 947.792290 1 3.2471 4764 | 23/45
85 h-m-p 1.6000 8.0000 0.1153 YC 947.792072 1 0.7158 4835 | 23/45
86 h-m-p 0.1865 8.0000 0.4423 +C 947.792011 0 1.0654 4906 | 23/45
87 h-m-p 1.6000 8.0000 0.0404 C 947.792011 0 1.7622 4976 | 23/45
88 h-m-p 1.6000 8.0000 0.0277 ++ 947.792007 m 8.0000 5046 | 23/45
89 h-m-p 0.2936 8.0000 0.7555 +Y 947.791995 0 2.6550 5117 | 23/45
90 h-m-p 1.6000 8.0000 0.1377 Y 947.791993 0 1.2787 5187 | 23/45
91 h-m-p 0.6721 8.0000 0.2619 +C 947.791992 0 3.5420 5258 | 23/45
92 h-m-p 1.6000 8.0000 0.3451 C 947.791992 0 2.2580 5328 | 23/45
93 h-m-p 1.6000 8.0000 0.3379 C 947.791991 0 2.4260 5398 | 23/45
94 h-m-p 1.6000 8.0000 0.3346 Y 947.791991 0 3.0017 5468 | 23/45
95 h-m-p 1.6000 8.0000 0.5896 Y 947.791991 0 2.9802 5538 | 23/45
96 h-m-p 1.6000 8.0000 0.1198 Y 947.791991 0 1.1247 5608 | 23/45
97 h-m-p 0.4813 8.0000 0.2798 Y 947.791991 0 0.8829 5678 | 23/45
98 h-m-p 1.6000 8.0000 0.0704 C 947.791991 0 0.4601 5748 | 23/45
99 h-m-p 1.1612 8.0000 0.0279 C 947.791991 0 0.2903 5818 | 23/45
100 h-m-p 0.2828 8.0000 0.0286 ---------------.. | 23/45
101 h-m-p 0.0160 8.0000 0.0017 ----------C 947.791991 0 0.0000 5981 | 23/45
102 h-m-p 0.0014 0.7173 0.0460 -----------.. | 23/45
103 h-m-p 0.0160 8.0000 0.0017 ------------- | 23/45
104 h-m-p 0.0160 8.0000 0.0017 -------------
Out..
lnL = -947.791991
6223 lfun, 24892 eigenQcodon, 746760 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -955.132227 S = -908.361656 -54.746104
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 90 patterns 7:18
did 20 / 90 patterns 7:18
did 30 / 90 patterns 7:18
did 40 / 90 patterns 7:18
did 50 / 90 patterns 7:18
did 60 / 90 patterns 7:18
did 70 / 90 patterns 7:18
did 80 / 90 patterns 7:18
did 90 / 90 patterns 7:18end of tree file.
Time used: 7:18
Model 7: beta
TREE # 1
(12, 13, 16, 25, ((((11, (17, ((22, 21, 1, 3, 2, 6, 14, 15, 20, 19, 24, 28), 26, 4, 23)), (30, 5), 8), ((27, 29), 10)), 18), 7, 9)); MP score: 41
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
36
0.098107 0.054299 0.077311 0.044193 0.069125 0.026146 0.104042 0.026165 0.031113 0.081604 0.097872 0.015691 0.104451 0.013701 0.031383 0.032521 0.101821 0.102659 0.099346 0.048790 0.090976 0.055631 0.020098 0.083985 0.104664 0.090874 0.020821 0.071687 0.039918 0.014796 0.036382 0.084022 0.063881 0.015305 0.026448 0.074780 0.018369 0.069915 0.090539 0.077105 2.188126 1.003477 1.320234
ntime & nrate & np: 40 1 43
Bounds (np=43):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 7.224154
np = 43
lnL0 = -1222.889911
Iterating by ming2
Initial: fx= 1222.889911
x= 0.09811 0.05430 0.07731 0.04419 0.06913 0.02615 0.10404 0.02617 0.03111 0.08160 0.09787 0.01569 0.10445 0.01370 0.03138 0.03252 0.10182 0.10266 0.09935 0.04879 0.09098 0.05563 0.02010 0.08399 0.10466 0.09087 0.02082 0.07169 0.03992 0.01480 0.03638 0.08402 0.06388 0.01531 0.02645 0.07478 0.01837 0.06992 0.09054 0.07711 2.18813 1.00348 1.32023
1 h-m-p 0.0000 0.0001 686.0714 ++ 1169.671133 m 0.0001 91 | 1/43
2 h-m-p 0.0000 0.0000 15848.9056 ++ 1165.460644 m 0.0000 180 | 2/43
3 h-m-p 0.0000 0.0000 4625.6087 ++ 1161.566171 m 0.0000 268 | 3/43
4 h-m-p 0.0000 0.0000 1595.2049 ++ 1144.502494 m 0.0000 355 | 4/43
5 h-m-p 0.0000 0.0001 998.1678 +CYCCCCC 1124.947652 6 0.0001 454 | 4/43
6 h-m-p 0.0000 0.0000 3333.4095 +CYCYYCCC 1110.977209 7 0.0000 551 | 4/43
7 h-m-p 0.0000 0.0000 3622.9452 ++ 1106.258433 m 0.0000 636 | 5/43
8 h-m-p 0.0000 0.0000 1435.8577 ++ 1102.417490 m 0.0000 721 | 6/43
9 h-m-p 0.0000 0.0001 528.5697 ++ 1086.969295 m 0.0001 805 | 7/43
10 h-m-p 0.0000 0.0000 4959.4137 ++ 1076.525726 m 0.0000 888 | 8/43
11 h-m-p 0.0000 0.0000 16740311.6070 ++ 1070.661315 m 0.0000 970 | 9/43
12 h-m-p 0.0000 0.0000 2516.8658 ++ 1048.220607 m 0.0000 1051 | 10/43
13 h-m-p 0.0000 0.0000 9746.4703 ++ 1045.983143 m 0.0000 1131 | 11/43
14 h-m-p 0.0000 0.0000 10254.9951 ++ 1011.924400 m 0.0000 1210 | 11/43
15 h-m-p 0.0000 0.0000 4177.5289 ++ 1010.344603 m 0.0000 1288 | 12/43
16 h-m-p 0.0000 0.0000 1185.4384 +YYCCCCC 1002.467885 6 0.0000 1378 | 12/43
17 h-m-p 0.0000 0.0000 1683.0145 ++ 1000.260915 m 0.0000 1455 | 13/43
18 h-m-p 0.0000 0.0000 1392.5768 ++ 988.899407 m 0.0000 1532 | 14/43
19 h-m-p 0.0000 0.0000 21226.0838 ++ 987.737166 m 0.0000 1608 | 15/43
20 h-m-p 0.0000 0.0000 47444.2341 ++ 987.622018 m 0.0000 1683 | 16/43
21 h-m-p 0.0000 0.0000 5025.4854 ++ 987.082201 m 0.0000 1757 | 17/43
22 h-m-p 0.0000 0.0000 797.4304 ++ 979.449574 m 0.0000 1830 | 18/43
23 h-m-p 0.0000 0.0000 2558.5179 ++ 978.760220 m 0.0000 1902 | 19/43
24 h-m-p 0.0000 0.0000 374.4906 ++ 976.848874 m 0.0000 1973 | 20/43
25 h-m-p 0.0000 0.0000 5618.2649 ++ 975.211498 m 0.0000 2043 | 21/43
26 h-m-p 0.0000 0.0000 432.8291 ++ 975.117767 m 0.0000 2112 | 22/43
27 h-m-p 0.0000 0.0000 3339.7011 ++ 974.932087 m 0.0000 2180 | 23/43
28 h-m-p 0.0000 0.0000 332.1524 ++ 974.568535 m 0.0000 2247 | 24/43
29 h-m-p 0.0001 0.0129 19.9729 +++YCCYCCC 966.849659 6 0.0109 2327 | 24/43
30 h-m-p 0.0033 0.0164 30.4750 YCYCCC 962.842173 5 0.0096 2401 | 24/43
31 h-m-p 0.0271 0.1357 1.7562 CCCCC 960.508241 4 0.0450 2474 | 24/43
32 h-m-p 0.0068 0.0342 3.1839 CCCC 959.991312 3 0.0111 2545 | 23/43
33 h-m-p 0.0021 0.0104 9.1656 -C 959.988533 0 0.0001 2611 | 23/43
34 h-m-p 0.0007 0.2367 1.8101 ++++YYCC 958.972765 3 0.1518 2685 | 23/43
35 h-m-p 0.0494 0.2470 1.6440 CCCCC 958.512612 4 0.0801 2759 | 23/43
36 h-m-p 0.0479 0.2396 0.9448 +YCYCCC 957.270576 5 0.1321 2834 | 23/43
37 h-m-p 0.0340 0.1701 1.7477 YCYCCC 956.800378 5 0.0783 2908 | 23/43
38 h-m-p 0.0371 0.1854 1.9391 CCC 956.339353 2 0.0586 2978 | 23/43
39 h-m-p 0.0374 0.2977 3.0352 +YYCCC 955.420611 4 0.1239 3051 | 23/43
40 h-m-p 0.0410 0.2048 2.6356 YCCCC 954.943012 4 0.0896 3124 | 23/43
41 h-m-p 0.0356 0.1780 1.3729 +YYCYYCC 954.314898 6 0.1256 3200 | 23/43
42 h-m-p 0.0096 0.0478 2.6243 +YCYYCC 954.177535 5 0.0321 3275 | 23/43
43 h-m-p 0.0005 0.0025 13.5086 ++ 954.110664 m 0.0025 3341 | 23/43
44 h-m-p -0.0000 -0.0000 0.5654
h-m-p: -0.00000000e+00 -0.00000000e+00 5.65392018e-01 954.110664
.. | 23/43
45 h-m-p 0.0000 0.0002 328477.9978 ---YYCCCCC 949.444644 6 0.0000 3484 | 23/43
46 h-m-p 0.0000 0.0002 358.3213 --YYCC 949.435680 3 0.0000 3556 | 23/43
47 h-m-p 0.0000 0.0002 144.9592 +CCCCC 948.928180 4 0.0001 3631 | 23/43
48 h-m-p 0.0001 0.0003 63.8111 CCCC 948.791835 3 0.0001 3703 | 23/43
49 h-m-p 0.0002 0.0031 21.9609 CCC 948.775329 2 0.0001 3773 | 23/43
50 h-m-p 0.0001 0.0016 14.3649 YC 948.770119 1 0.0001 3840 | 23/43
51 h-m-p 0.0001 0.0031 9.4861 C 948.767474 0 0.0001 3906 | 23/43
52 h-m-p 0.0001 0.0084 15.9139 YC 948.763348 1 0.0002 3973 | 23/43
53 h-m-p 0.0001 0.0031 16.6569 YC 948.761705 1 0.0001 4040 | 23/43
54 h-m-p 0.0001 0.0039 7.3710 CC 948.761301 1 0.0001 4108 | 23/43
55 h-m-p 0.0001 0.0188 2.9359 C 948.761276 0 0.0000 4174 | 23/43
56 h-m-p 0.0000 0.0159 6.6210 -Y 948.761275 0 0.0000 4241 | 23/43
57 h-m-p 0.0000 0.0110 7.1065 --------.. | 23/43
58 h-m-p 0.0000 0.0057 4.9972 --------
Out..
lnL = -948.761275
4386 lfun, 48246 eigenQcodon, 1754400 P(t)
end of tree file.
Time used: 17:57
Model 8: beta&w>1
TREE # 1
(12, 13, 16, 25, ((((11, (17, ((22, 21, 1, 3, 2, 6, 14, 15, 20, 19, 24, 28), 26, 4, 23)), (30, 5), 8), ((27, 29), 10)), 18), 7, 9)); MP score: 41
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
36
0.035723 0.066726 0.090512 0.013817 0.026634 0.076646 0.057167 0.079234 0.022502 0.024237 0.077579 0.095424 0.080885 0.086675 0.094002 0.066141 0.082781 0.035646 0.036560 0.105502 0.108820 0.017274 0.100165 0.105565 0.071216 0.038200 0.057671 0.106144 0.081168 0.093749 0.076448 0.040312 0.106397 0.049124 0.080557 0.104021 0.048510 0.059567 0.075716 0.073288 1.906380 0.900000 0.548721 1.804213 1.300000
ntime & nrate & np: 40 2 45
Bounds (np=45):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 9.028849
np = 45
lnL0 = -1212.030449
Iterating by ming2
Initial: fx= 1212.030449
x= 0.03572 0.06673 0.09051 0.01382 0.02663 0.07665 0.05717 0.07923 0.02250 0.02424 0.07758 0.09542 0.08089 0.08668 0.09400 0.06614 0.08278 0.03565 0.03656 0.10550 0.10882 0.01727 0.10016 0.10556 0.07122 0.03820 0.05767 0.10614 0.08117 0.09375 0.07645 0.04031 0.10640 0.04912 0.08056 0.10402 0.04851 0.05957 0.07572 0.07329 1.90638 0.90000 0.54872 1.80421 1.30000
1 h-m-p 0.0000 0.0001 621.1649 ++ 1161.831551 m 0.0001 95 | 1/45
2 h-m-p 0.0000 0.0000 2090.4507 ++ 1152.176124 m 0.0000 188 | 2/45
3 h-m-p 0.0000 0.0000 3835.7165 ++ 1102.048810 m 0.0000 280 | 3/45
4 h-m-p 0.0000 0.0000 791.1098 ++ 1099.845812 m 0.0000 371 | 4/45
5 h-m-p 0.0000 0.0000 493.9668 ++ 1095.585009 m 0.0000 461 | 5/45
6 h-m-p 0.0000 0.0000 4595.4518 ++ 1090.447707 m 0.0000 550 | 6/45
7 h-m-p 0.0000 0.0000 6703.3698 ++ 1028.545074 m 0.0000 638 | 7/45
8 h-m-p 0.0000 0.0000 30615.4884 ++ 1027.899772 m 0.0000 725 | 8/45
9 h-m-p 0.0000 0.0000 2971.0257 ++ 1017.114829 m 0.0000 811 | 9/45
10 h-m-p 0.0000 0.0000 1574.6275 ++ 1007.332551 m 0.0000 896 | 10/45
11 h-m-p 0.0000 0.0000 1151.8022 ++ 1002.380001 m 0.0000 980 | 11/45
12 h-m-p 0.0000 0.0000 3568.9352 ++ 998.393233 m 0.0000 1063 | 12/45
13 h-m-p 0.0000 0.0000 11885093544.6237
h-m-p: 2.27483610e-13 1.13741805e-12 1.18850935e+10 998.393233
.. | 12/45
14 h-m-p 0.0000 0.0000 507.9950 ++ 994.416712 m 0.0000 1223 | 13/45
15 h-m-p 0.0000 0.0000 21213.5745 ++ 991.021459 m 0.0000 1304 | 14/45
16 h-m-p 0.0000 0.0000 1021.6985 ++ 986.653752 m 0.0000 1384 | 15/45
17 h-m-p 0.0000 0.0000 1559.6122 ++ 979.284173 m 0.0000 1463 | 16/45
18 h-m-p 0.0000 0.0000 1329.3078 ++ 976.291018 m 0.0000 1541 | 17/45
19 h-m-p 0.0000 0.0000 1394.9785 ++ 973.616251 m 0.0000 1618 | 18/45
20 h-m-p 0.0000 0.0000 1397.3883 ++ 971.803221 m 0.0000 1694 | 19/45
21 h-m-p 0.0000 0.0000 3217.1095 ++ 968.644700 m 0.0000 1769 | 20/45
22 h-m-p 0.0000 0.0000 2500.5709 ++ 963.851075 m 0.0000 1843 | 21/45
23 h-m-p 0.0000 0.0000 2047.8340 ++ 962.795007 m 0.0000 1916 | 22/45
24 h-m-p 0.0000 0.0000 656.0774 ++ 962.478838 m 0.0000 1988 | 23/45
25 h-m-p 0.0000 0.0006 114.6714 ++CCCYC 958.757336 4 0.0004 2069 | 23/45
26 h-m-p 0.0000 0.0002 160.5623 YCCCC 957.955053 4 0.0001 2146 | 23/45
27 h-m-p 0.0001 0.0004 221.1061 +YYC 955.142543 2 0.0003 2219 | 23/45
28 h-m-p 0.0000 0.0001 1212.9885 +YCYCCC 952.613043 5 0.0000 2298 | 23/45
29 h-m-p 0.0000 0.0002 188.5657 CCCC 952.217971 3 0.0001 2374 | 23/45
30 h-m-p 0.0001 0.0004 70.6083 CCC 952.087515 2 0.0001 2448 | 23/45
31 h-m-p 0.0001 0.0006 54.4526 CYC 952.007287 2 0.0001 2521 | 23/45
32 h-m-p 0.0008 0.0090 7.1323 +YCC 951.911263 2 0.0020 2595 | 23/45
33 h-m-p 0.0001 0.0009 147.5282 +YYCCC 951.609710 4 0.0003 2672 | 23/45
34 h-m-p 0.0001 0.0005 399.4053 CCCCC 951.176326 4 0.0002 2750 | 23/45
35 h-m-p 0.0007 0.0033 7.9152 CC 951.171492 1 0.0002 2822 | 23/45
36 h-m-p 0.0001 0.0116 17.2143 ++YCCC 951.006220 3 0.0023 2899 | 23/45
37 h-m-p 0.0012 0.0089 33.8506 YC 950.631846 1 0.0028 2970 | 23/45
38 h-m-p 0.0087 0.0436 7.7129 CCCCC 950.358604 4 0.0107 3048 | 23/45
39 h-m-p 0.0077 0.0384 7.5369 +CCC 949.691059 2 0.0315 3123 | 23/45
40 h-m-p 0.0078 0.0388 2.0415 CCC 949.634849 2 0.0095 3197 | 23/45
41 h-m-p 0.0241 0.4662 0.8062 +CCCCC 949.344171 4 0.1313 3276 | 23/45
42 h-m-p 0.0216 0.1284 4.8966 YCCC 948.836772 3 0.0493 3351 | 23/45
43 h-m-p 0.0377 0.3967 6.4024 CYCC 948.440310 3 0.0409 3426 | 23/45
44 h-m-p 0.1180 0.5901 0.4384 YCCCC 948.216813 4 0.2437 3503 | 23/45
45 h-m-p 0.3512 2.3379 0.3042 CYC 948.078607 2 0.3318 3576 | 23/45
46 h-m-p 1.2887 6.4436 0.0745 YCC 948.000136 2 0.9788 3649 | 23/45
47 h-m-p 0.6338 8.0000 0.1150 +CC 947.939636 1 2.2760 3722 | 23/45
48 h-m-p 1.4414 7.2070 0.1649 YYYC 947.897015 3 1.3436 3795 | 23/45
49 h-m-p 1.1486 8.0000 0.1929 YC 947.838060 1 1.9430 3866 | 23/45
50 h-m-p 1.6000 8.0000 0.1296 CC 947.815517 1 1.6424 3938 | 23/45
51 h-m-p 1.6000 8.0000 0.0659 YC 947.810191 1 0.9385 4009 | 23/45
52 h-m-p 0.3049 8.0000 0.2027 YC 947.805998 1 0.5427 4080 | 23/45
53 h-m-p 1.6000 8.0000 0.0621 YC 947.804453 1 0.7602 4151 | 23/45
54 h-m-p 1.6000 8.0000 0.0139 YC 947.804116 1 0.9890 4222 | 23/45
55 h-m-p 1.6000 8.0000 0.0068 C 947.804006 0 1.4043 4292 | 23/45
56 h-m-p 1.2091 8.0000 0.0079 YC 947.803928 1 2.6633 4363 | 23/45
57 h-m-p 1.6000 8.0000 0.0120 ++ 947.803672 m 8.0000 4433 | 23/45
58 h-m-p 1.3506 8.0000 0.0709 +YC 947.802674 1 4.2841 4505 | 23/45
59 h-m-p 1.5559 8.0000 0.1951 YC 947.800838 1 3.6020 4576 | 23/45
60 h-m-p 1.6000 8.0000 0.2209 CY 947.799556 1 2.0062 4648 | 23/45
61 h-m-p 0.8362 8.0000 0.5301 CC 947.798969 1 0.9864 4720 | 23/45
62 h-m-p 1.4480 8.0000 0.3611 CC 947.798141 1 2.2236 4792 | 23/45
63 h-m-p 1.6000 8.0000 0.3161 YC 947.797006 1 3.8757 4863 | 23/45
64 h-m-p 1.6000 8.0000 0.6645 CC 947.796213 1 2.1399 4935 | 23/45
65 h-m-p 1.6000 8.0000 0.5475 C 947.795655 0 1.6000 5005 | 23/45
66 h-m-p 0.4318 8.0000 2.0289 YC 947.795075 1 1.0195 5076 | 23/45
67 h-m-p 1.6000 8.0000 1.1985 CC 947.794549 1 2.2228 5148 | 23/45
68 h-m-p 1.6000 8.0000 0.8519 YC 947.793996 1 3.2889 5219 | 23/45
69 h-m-p 0.7779 8.0000 3.6021 CC 947.793680 1 1.0243 5291 | 23/45
70 h-m-p 1.6000 8.0000 2.1197 CC 947.793397 1 2.2793 5363 | 23/45
71 h-m-p 1.6000 8.0000 2.4272 YC 947.793104 1 2.6052 5434 | 23/45
72 h-m-p 1.5218 8.0000 4.1553 CC 947.792849 1 2.1480 5506 | 23/45
73 h-m-p 1.5646 8.0000 5.7048 YC 947.792650 1 2.6008 5577 | 23/45
74 h-m-p 1.4079 7.0393 6.3383 C 947.792544 0 1.3894 5647 | 23/45
75 h-m-p 0.5358 2.6789 13.3679 +C 947.792396 0 1.9019 5718 | 23/45
76 h-m-p 0.1746 0.8730 11.8972 ++ 947.792347 m 0.8730 5788 | 24/45
77 h-m-p 0.2126 8.0000 2.7931 -------------C 947.792347 0 0.0000 5871 | 24/45
78 h-m-p 0.0160 8.0000 0.0124 ++Y 947.792332 0 0.5050 5942 | 24/45
79 h-m-p 1.6000 8.0000 0.0005 Y 947.792331 0 0.9935 6011 | 24/45
80 h-m-p 1.6000 8.0000 0.0001 Y 947.792331 0 2.7549 6080 | 24/45
81 h-m-p 1.6000 8.0000 0.0000 ++ 947.792331 m 8.0000 6149 | 24/45
82 h-m-p 0.4923 8.0000 0.0008 +++ 947.792327 m 8.0000 6219 | 24/45
83 h-m-p 1.2804 8.0000 0.0049 +C 947.792313 0 4.7149 6289 | 24/45
84 h-m-p 1.6000 8.0000 0.0008 C 947.792311 0 1.3036 6358 | 24/45
85 h-m-p 1.6000 8.0000 0.0003 C 947.792311 0 1.3751 6427 | 24/45
86 h-m-p 1.6000 8.0000 0.0001 C 947.792311 0 1.3562 6496 | 24/45
87 h-m-p 1.6000 8.0000 0.0000 ----Y 947.792311 0 0.0016 6569
Out..
lnL = -947.792311
6570 lfun, 78840 eigenQcodon, 2890800 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -954.415046 S = -908.376885 -44.097105
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 90 patterns 36:28
did 20 / 90 patterns 36:28
did 30 / 90 patterns 36:29
did 40 / 90 patterns 36:29
did 50 / 90 patterns 36:29
did 60 / 90 patterns 36:29
did 70 / 90 patterns 36:29
did 80 / 90 patterns 36:30
did 90 / 90 patterns 36:30end of tree file.
Time used: 36:30
The loglikelihoods for models M1, M2, M7 and M8 are -948.458426 -947.791991 -948.761275 -947.792311 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
USA_Minnesota85_2013_nsp13_VIPR_ALG4_658130540_19697_20599_1_2013_12_04_USA_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
PEDV_MEX_JAL_03_2017_nsp13_VIPR_ALG4_AVU05381_1_19562_20464_1_2017_02_10_Mexico_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
USA_Missouri337_2014_nsp13_VIPR_ALG4_825144797_19687_20589_1_2014_05_07_USA_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
KB2013_4_nsp13_VIPR_ALG4_1142619340_19732_20634_1_2013_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
GDS01_nsp13_VIPR_ALG4_815939790_19732_20634_1_2012_11_10_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
KGS_4_JPN_2014_nsp13_VIPR_ALG4_948549235_19674_20576_1_2014_04_Japan_Pig_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
B5_HB2017_nsp13_VIPR_ALG4_AXK47357_1_19732_20634_1_2017_02_17_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
PEDV_7C_nsp13_VIPR_ALG4_761662515_19732_20634_1_2011_06_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
KNU_1705_nsp13_VIPR_ALG4_AWM11473_1_19693_20595_1_2017_12_South_Korea_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
HeN170821_nsp13_VIPR_ALG4_QGJ03658_1_19732_20634_1_2017_08_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLESCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
CH_SCZJ_2018_nsp13_VIPR_ALG4_AZL47227_1_19732_20634_1_2018_02_06_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
PEDV_AUSTRIA_L01065_M10_15_04_2015_nsp13_VIPR_ALG4_SNQ27929_1_19732_20634_1_NA_NA_Unknown_PEDV ASEWKCGYSMPSIYKIQRMCLESCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
PEDV_GER_L01420_K06_15_04_2015_nsp13_VIPR_ALG4_SNQ28075_1_19732_20634_1_NA_NA_Unknown_PEDV ASEWKCGYSMPSIYKIQRMCLESCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
TW_Yunlin550_2018_nsp13_VIPR_ALG4_QFP92270_1_19715_20617_1_2018_02_27_Taiwan_NA_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
USA_Ohio69_2013_nsp13_VIPR_ALG4_658130449_19697_20599_1_2013_11_24_USA_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
PEDV_GER_L00857_K14_14_04_2014_nsp13_VIPR_ALG4_SNQ28009_1_19713_20615_1_NA_NA_Unknown_PEDV ASEWKCGYSMPSIYKIQRMCLESCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
LC_nsp13_VIPR_ALG4_409034598_19732_20634_1_2011_02_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
CH_TP_4_3_2018_nsp13_VIPR_ALG4_QCC26594_1_19734_20237_1_2018_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
USA_Tennesse56_2013_nsp13_VIPR_ALG4_658130372_19697_20599_1_2013_11_04_USA_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
USA_Illinois260_2014_nsp13_VIPR_ALG4_825144671_19687_20589_1_2014_03_14_USA_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
KNU_141112_S_DEL2_nsp13_VIPR_ALG4_ASA40090_1_19732_20634_1_2016_01_South_Korea_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
USA_Minnesota79_2013_nsp13_VIPR_ALG4_658130512_19697_20599_1_2013_11_30_USA_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
GDS23_nsp13_VIPR_ALG4_AWV57053_1_19732_20634_1_2012_11_05_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGINLPDGIMFNVVKYTQLCQYLNSTTMCV
USA_Indiana195_2014_nsp13_VIPR_ALG4_825144657_19687_20589_1_2014_03_04_USA_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
PEDV_ROMANIA_L01330_K25_15_02_2015_nsp13_VIPR_ALG4_SNQ28044_1_19732_20634_1_NA_NA_Unknown_PEDV ASEWKCGYSMPSIYKIQRMCLESCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
PEDV_10F_nsp13_VIPR_ALG4_761662529_19732_20634_1_2012_01_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
CH_hubei_2016_nsp13_VIPR_ALG4_ART84249_1_19731_20633_1_2016_03_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
CAN_Quebec334_2014_nsp13_VIPR_ALG4_825144874_19687_20589_1_2014_05_14_Canada_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
GDS28_nsp13_VIPR_ALG4_QCQ19857_1_19732_20634_1_2012_12_13_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
GDS40_nsp13_VIPR_ALG4_QCQ19965_1_19732_20634_1_2011_02_10_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCV
**********************.**********:**************************
USA_Minnesota85_2013_nsp13_VIPR_ALG4_658130540_19697_20599_1_2013_12_04_USA_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
PEDV_MEX_JAL_03_2017_nsp13_VIPR_ALG4_AVU05381_1_19562_20464_1_2017_02_10_Mexico_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
USA_Missouri337_2014_nsp13_VIPR_ALG4_825144797_19687_20589_1_2014_05_07_USA_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
KB2013_4_nsp13_VIPR_ALG4_1142619340_19732_20634_1_2013_China_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRGWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
GDS01_nsp13_VIPR_ALG4_815939790_19732_20634_1_2012_11_10_China_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
KGS_4_JPN_2014_nsp13_VIPR_ALG4_948549235_19674_20576_1_2014_04_Japan_Pig_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
B5_HB2017_nsp13_VIPR_ALG4_AXK47357_1_19732_20634_1_2017_02_17_China_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
PEDV_7C_nsp13_VIPR_ALG4_761662515_19732_20634_1_2011_06_China_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
KNU_1705_nsp13_VIPR_ALG4_AWM11473_1_19693_20595_1_2017_12_South_Korea_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
HeN170821_nsp13_VIPR_ALG4_QGJ03658_1_19732_20634_1_2017_08_China_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
CH_SCZJ_2018_nsp13_VIPR_ALG4_AZL47227_1_19732_20634_1_2018_02_06_China_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
PEDV_AUSTRIA_L01065_M10_15_04_2015_nsp13_VIPR_ALG4_SNQ27929_1_19732_20634_1_NA_NA_Unknown_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
PEDV_GER_L01420_K06_15_04_2015_nsp13_VIPR_ALG4_SNQ28075_1_19732_20634_1_NA_NA_Unknown_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
TW_Yunlin550_2018_nsp13_VIPR_ALG4_QFP92270_1_19715_20617_1_2018_02_27_Taiwan_NA_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
USA_Ohio69_2013_nsp13_VIPR_ALG4_658130449_19697_20599_1_2013_11_24_USA_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
PEDV_GER_L00857_K14_14_04_2014_nsp13_VIPR_ALG4_SNQ28009_1_19713_20615_1_NA_NA_Unknown_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
LC_nsp13_VIPR_ALG4_409034598_19732_20634_1_2011_02_China_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
CH_TP_4_3_2018_nsp13_VIPR_ALG4_QCC26594_1_19734_20237_1_2018_China_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
USA_Tennesse56_2013_nsp13_VIPR_ALG4_658130372_19697_20599_1_2013_11_04_USA_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
USA_Illinois260_2014_nsp13_VIPR_ALG4_825144671_19687_20589_1_2014_03_14_USA_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
KNU_141112_S_DEL2_nsp13_VIPR_ALG4_ASA40090_1_19732_20634_1_2016_01_South_Korea_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
USA_Minnesota79_2013_nsp13_VIPR_ALG4_658130512_19697_20599_1_2013_11_30_USA_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
GDS23_nsp13_VIPR_ALG4_AWV57053_1_19732_20634_1_2012_11_05_China_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
USA_Indiana195_2014_nsp13_VIPR_ALG4_825144657_19687_20589_1_2014_03_04_USA_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
PEDV_ROMANIA_L01330_K25_15_02_2015_nsp13_VIPR_ALG4_SNQ28044_1_19732_20634_1_NA_NA_Unknown_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
PEDV_10F_nsp13_VIPR_ALG4_761662529_19732_20634_1_2012_01_China_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
CH_hubei_2016_nsp13_VIPR_ALG4_ART84249_1_19731_20633_1_2016_03_China_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
CAN_Quebec334_2014_nsp13_VIPR_ALG4_825144874_19687_20589_1_2014_05_14_Canada_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
GDS28_nsp13_VIPR_ALG4_QCQ19857_1_19732_20634_1_2012_12_13_China_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
GDS40_nsp13_VIPR_ALG4_QCQ19965_1_19732_20634_1_2011_02_10_China_Swine_PEDV PHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLS
************************* **********************************
USA_Minnesota85_2013_nsp13_VIPR_ALG4_658130540_19697_20599_1_2013_12_04_USA_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
PEDV_MEX_JAL_03_2017_nsp13_VIPR_ALG4_AVU05381_1_19562_20464_1_2017_02_10_Mexico_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
USA_Missouri337_2014_nsp13_VIPR_ALG4_825144797_19687_20589_1_2014_05_07_USA_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
KB2013_4_nsp13_VIPR_ALG4_1142619340_19732_20634_1_2013_China_Swine_PEDV DKVDLVISDMYDGKIKSCDGENVSKEGFFPYIKGVITEKLALGGTVAIKVTEFSWNKKLY
GDS01_nsp13_VIPR_ALG4_815939790_19732_20634_1_2012_11_10_China_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
KGS_4_JPN_2014_nsp13_VIPR_ALG4_948549235_19674_20576_1_2014_04_Japan_Pig_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
B5_HB2017_nsp13_VIPR_ALG4_AXK47357_1_19732_20634_1_2017_02_17_China_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
PEDV_7C_nsp13_VIPR_ALG4_761662515_19732_20634_1_2011_06_China_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
KNU_1705_nsp13_VIPR_ALG4_AWM11473_1_19693_20595_1_2017_12_South_Korea_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKERFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
HeN170821_nsp13_VIPR_ALG4_QGJ03658_1_19732_20634_1_2017_08_China_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
CH_SCZJ_2018_nsp13_VIPR_ALG4_AZL47227_1_19732_20634_1_2018_02_06_China_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
PEDV_AUSTRIA_L01065_M10_15_04_2015_nsp13_VIPR_ALG4_SNQ27929_1_19732_20634_1_NA_NA_Unknown_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
PEDV_GER_L01420_K06_15_04_2015_nsp13_VIPR_ALG4_SNQ28075_1_19732_20634_1_NA_NA_Unknown_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
TW_Yunlin550_2018_nsp13_VIPR_ALG4_QFP92270_1_19715_20617_1_2018_02_27_Taiwan_NA_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
USA_Ohio69_2013_nsp13_VIPR_ALG4_658130449_19697_20599_1_2013_11_24_USA_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
PEDV_GER_L00857_K14_14_04_2014_nsp13_VIPR_ALG4_SNQ28009_1_19713_20615_1_NA_NA_Unknown_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
LC_nsp13_VIPR_ALG4_409034598_19732_20634_1_2011_02_China_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
CH_TP_4_3_2018_nsp13_VIPR_ALG4_QCC26594_1_19734_20237_1_2018_China_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITDKV---GT---------------
USA_Tennesse56_2013_nsp13_VIPR_ALG4_658130372_19697_20599_1_2013_11_04_USA_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
USA_Illinois260_2014_nsp13_VIPR_ALG4_825144671_19687_20589_1_2014_03_14_USA_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
KNU_141112_S_DEL2_nsp13_VIPR_ALG4_ASA40090_1_19732_20634_1_2016_01_South_Korea_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
USA_Minnesota79_2013_nsp13_VIPR_ALG4_658130512_19697_20599_1_2013_11_30_USA_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
GDS23_nsp13_VIPR_ALG4_AWV57053_1_19732_20634_1_2012_11_05_China_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
USA_Indiana195_2014_nsp13_VIPR_ALG4_825144657_19687_20589_1_2014_03_04_USA_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
PEDV_ROMANIA_L01330_K25_15_02_2015_nsp13_VIPR_ALG4_SNQ28044_1_19732_20634_1_NA_NA_Unknown_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
PEDV_10F_nsp13_VIPR_ALG4_761662529_19732_20634_1_2012_01_China_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
CH_hubei_2016_nsp13_VIPR_ALG4_ART84249_1_19731_20633_1_2016_03_China_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
CAN_Quebec334_2014_nsp13_VIPR_ALG4_825144874_19687_20589_1_2014_05_14_Canada_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
GDS28_nsp13_VIPR_ALG4_QCQ19857_1_19732_20634_1_2012_12_13_China_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
GDS40_nsp13_VIPR_ALG4_QCQ19965_1_19732_20634_1_2011_02_10_China_Swine_PEDV DKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLY
**.*********************** *****:****:*: **
USA_Minnesota85_2013_nsp13_VIPR_ALG4_658130540_19697_20599_1_2013_12_04_USA_Swine_PEDV ELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
PEDV_MEX_JAL_03_2017_nsp13_VIPR_ALG4_AVU05381_1_19562_20464_1_2017_02_10_Mexico_Swine_PEDV ELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
USA_Missouri337_2014_nsp13_VIPR_ALG4_825144797_19687_20589_1_2014_05_07_USA_Swine_PEDV ELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
KB2013_4_nsp13_VIPR_ALG4_1142619340_19732_20634_1_2013_China_Swine_PEDV ELIQKFEYWTMFCNSVNTSSSEAFLIGVHYLGDFASGTVIDGNTMHANYIFWRNSTIMTM
GDS01_nsp13_VIPR_ALG4_815939790_19732_20634_1_2012_11_10_China_Swine_PEDV ELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
KGS_4_JPN_2014_nsp13_VIPR_ALG4_948549235_19674_20576_1_2014_04_Japan_Pig_PEDV ELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
B5_HB2017_nsp13_VIPR_ALG4_AXK47357_1_19732_20634_1_2017_02_17_China_Swine_PEDV ELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
PEDV_7C_nsp13_VIPR_ALG4_761662515_19732_20634_1_2011_06_China_Swine_PEDV ELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
KNU_1705_nsp13_VIPR_ALG4_AWM11473_1_19693_20595_1_2017_12_South_Korea_Swine_PEDV ELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
HeN170821_nsp13_VIPR_ALG4_QGJ03658_1_19732_20634_1_2017_08_China_Swine_PEDV ELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
CH_SCZJ_2018_nsp13_VIPR_ALG4_AZL47227_1_19732_20634_1_2018_02_06_China_Swine_PEDV ELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
PEDV_AUSTRIA_L01065_M10_15_04_2015_nsp13_VIPR_ALG4_SNQ27929_1_19732_20634_1_NA_NA_Unknown_PEDV ELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
PEDV_GER_L01420_K06_15_04_2015_nsp13_VIPR_ALG4_SNQ28075_1_19732_20634_1_NA_NA_Unknown_PEDV ELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
TW_Yunlin550_2018_nsp13_VIPR_ALG4_QFP92270_1_19715_20617_1_2018_02_27_Taiwan_NA_PEDV ELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
USA_Ohio69_2013_nsp13_VIPR_ALG4_658130449_19697_20599_1_2013_11_24_USA_Swine_PEDV ELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
PEDV_GER_L00857_K14_14_04_2014_nsp13_VIPR_ALG4_SNQ28009_1_19713_20615_1_NA_NA_Unknown_PEDV ELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
LC_nsp13_VIPR_ALG4_409034598_19732_20634_1_2011_02_China_Swine_PEDV ELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
CH_TP_4_3_2018_nsp13_VIPR_ALG4_QCC26594_1_19734_20237_1_2018_China_Swine_PEDV ------------------------------------------------------------
USA_Tennesse56_2013_nsp13_VIPR_ALG4_658130372_19697_20599_1_2013_11_04_USA_Swine_PEDV ELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
USA_Illinois260_2014_nsp13_VIPR_ALG4_825144671_19687_20589_1_2014_03_14_USA_Swine_PEDV ELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
KNU_141112_S_DEL2_nsp13_VIPR_ALG4_ASA40090_1_19732_20634_1_2016_01_South_Korea_Swine_PEDV ELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
USA_Minnesota79_2013_nsp13_VIPR_ALG4_658130512_19697_20599_1_2013_11_30_USA_Swine_PEDV ELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
GDS23_nsp13_VIPR_ALG4_AWV57053_1_19732_20634_1_2012_11_05_China_Swine_PEDV ELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
USA_Indiana195_2014_nsp13_VIPR_ALG4_825144657_19687_20589_1_2014_03_04_USA_Swine_PEDV ELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
PEDV_ROMANIA_L01330_K25_15_02_2015_nsp13_VIPR_ALG4_SNQ28044_1_19732_20634_1_NA_NA_Unknown_PEDV ELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
PEDV_10F_nsp13_VIPR_ALG4_761662529_19732_20634_1_2012_01_China_Swine_PEDV ELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
CH_hubei_2016_nsp13_VIPR_ALG4_ART84249_1_19731_20633_1_2016_03_China_Swine_PEDV ELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASSAVIDGNTMHANYIFWRNSTIMTM
CAN_Quebec334_2014_nsp13_VIPR_ALG4_825144874_19687_20589_1_2014_05_14_Canada_Swine_PEDV ELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
GDS28_nsp13_VIPR_ALG4_QCQ19857_1_19732_20634_1_2012_12_13_China_Swine_PEDV ELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
GDS40_nsp13_VIPR_ALG4_QCQ19965_1_19732_20634_1_2011_02_10_China_Swine_PEDV ELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTM
USA_Minnesota85_2013_nsp13_VIPR_ALG4_658130540_19697_20599_1_2013_12_04_USA_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
PEDV_MEX_JAL_03_2017_nsp13_VIPR_ALG4_AVU05381_1_19562_20464_1_2017_02_10_Mexico_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICDFSNHLVNVN
USA_Missouri337_2014_nsp13_VIPR_ALG4_825144797_19687_20589_1_2014_05_07_USA_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
KB2013_4_nsp13_VIPR_ALG4_1142619340_19732_20634_1_2013_China_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
GDS01_nsp13_VIPR_ALG4_815939790_19732_20634_1_2012_11_10_China_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
KGS_4_JPN_2014_nsp13_VIPR_ALG4_948549235_19674_20576_1_2014_04_Japan_Pig_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
B5_HB2017_nsp13_VIPR_ALG4_AXK47357_1_19732_20634_1_2017_02_17_China_Swine_PEDV SYNSVLDLSTFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
PEDV_7C_nsp13_VIPR_ALG4_761662515_19732_20634_1_2011_06_China_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
KNU_1705_nsp13_VIPR_ALG4_AWM11473_1_19693_20595_1_2017_12_South_Korea_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
HeN170821_nsp13_VIPR_ALG4_QGJ03658_1_19732_20634_1_2017_08_China_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
CH_SCZJ_2018_nsp13_VIPR_ALG4_AZL47227_1_19732_20634_1_2018_02_06_China_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
PEDV_AUSTRIA_L01065_M10_15_04_2015_nsp13_VIPR_ALG4_SNQ27929_1_19732_20634_1_NA_NA_Unknown_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
PEDV_GER_L01420_K06_15_04_2015_nsp13_VIPR_ALG4_SNQ28075_1_19732_20634_1_NA_NA_Unknown_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
TW_Yunlin550_2018_nsp13_VIPR_ALG4_QFP92270_1_19715_20617_1_2018_02_27_Taiwan_NA_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
USA_Ohio69_2013_nsp13_VIPR_ALG4_658130449_19697_20599_1_2013_11_24_USA_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
PEDV_GER_L00857_K14_14_04_2014_nsp13_VIPR_ALG4_SNQ28009_1_19713_20615_1_NA_NA_Unknown_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
LC_nsp13_VIPR_ALG4_409034598_19732_20634_1_2011_02_China_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
CH_TP_4_3_2018_nsp13_VIPR_ALG4_QCC26594_1_19734_20237_1_2018_China_Swine_PEDV ----------------------------------------------WWYCGY--------
USA_Tennesse56_2013_nsp13_VIPR_ALG4_658130372_19697_20599_1_2013_11_04_USA_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
USA_Illinois260_2014_nsp13_VIPR_ALG4_825144671_19687_20589_1_2014_03_14_USA_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
KNU_141112_S_DEL2_nsp13_VIPR_ALG4_ASA40090_1_19732_20634_1_2016_01_South_Korea_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
USA_Minnesota79_2013_nsp13_VIPR_ALG4_658130512_19697_20599_1_2013_11_30_USA_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
GDS23_nsp13_VIPR_ALG4_AWV57053_1_19732_20634_1_2012_11_05_China_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
USA_Indiana195_2014_nsp13_VIPR_ALG4_825144657_19687_20589_1_2014_03_04_USA_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
PEDV_ROMANIA_L01330_K25_15_02_2015_nsp13_VIPR_ALG4_SNQ28044_1_19732_20634_1_NA_NA_Unknown_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
PEDV_10F_nsp13_VIPR_ALG4_761662529_19732_20634_1_2012_01_China_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
CH_hubei_2016_nsp13_VIPR_ALG4_ART84249_1_19731_20633_1_2016_03_China_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
CAN_Quebec334_2014_nsp13_VIPR_ALG4_825144874_19687_20589_1_2014_05_14_Canada_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
GDS28_nsp13_VIPR_ALG4_QCQ19857_1_19732_20634_1_2012_12_13_China_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
GDS40_nsp13_VIPR_ALG4_QCQ19965_1_19732_20634_1_2011_02_10_China_Swine_PEDV SYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVN
*.:
USA_Minnesota85_2013_nsp13_VIPR_ALG4_658130540_19697_20599_1_2013_12_04_USA_Swine_PEDV K
PEDV_MEX_JAL_03_2017_nsp13_VIPR_ALG4_AVU05381_1_19562_20464_1_2017_02_10_Mexico_Swine_PEDV K
USA_Missouri337_2014_nsp13_VIPR_ALG4_825144797_19687_20589_1_2014_05_07_USA_Swine_PEDV K
KB2013_4_nsp13_VIPR_ALG4_1142619340_19732_20634_1_2013_China_Swine_PEDV K
GDS01_nsp13_VIPR_ALG4_815939790_19732_20634_1_2012_11_10_China_Swine_PEDV K
KGS_4_JPN_2014_nsp13_VIPR_ALG4_948549235_19674_20576_1_2014_04_Japan_Pig_PEDV K
B5_HB2017_nsp13_VIPR_ALG4_AXK47357_1_19732_20634_1_2017_02_17_China_Swine_PEDV K
PEDV_7C_nsp13_VIPR_ALG4_761662515_19732_20634_1_2011_06_China_Swine_PEDV K
KNU_1705_nsp13_VIPR_ALG4_AWM11473_1_19693_20595_1_2017_12_South_Korea_Swine_PEDV K
HeN170821_nsp13_VIPR_ALG4_QGJ03658_1_19732_20634_1_2017_08_China_Swine_PEDV K
CH_SCZJ_2018_nsp13_VIPR_ALG4_AZL47227_1_19732_20634_1_2018_02_06_China_Swine_PEDV K
PEDV_AUSTRIA_L01065_M10_15_04_2015_nsp13_VIPR_ALG4_SNQ27929_1_19732_20634_1_NA_NA_Unknown_PEDV K
PEDV_GER_L01420_K06_15_04_2015_nsp13_VIPR_ALG4_SNQ28075_1_19732_20634_1_NA_NA_Unknown_PEDV K
TW_Yunlin550_2018_nsp13_VIPR_ALG4_QFP92270_1_19715_20617_1_2018_02_27_Taiwan_NA_PEDV K
USA_Ohio69_2013_nsp13_VIPR_ALG4_658130449_19697_20599_1_2013_11_24_USA_Swine_PEDV K
PEDV_GER_L00857_K14_14_04_2014_nsp13_VIPR_ALG4_SNQ28009_1_19713_20615_1_NA_NA_Unknown_PEDV K
LC_nsp13_VIPR_ALG4_409034598_19732_20634_1_2011_02_China_Swine_PEDV K
CH_TP_4_3_2018_nsp13_VIPR_ALG4_QCC26594_1_19734_20237_1_2018_China_Swine_PEDV -
USA_Tennesse56_2013_nsp13_VIPR_ALG4_658130372_19697_20599_1_2013_11_04_USA_Swine_PEDV K
USA_Illinois260_2014_nsp13_VIPR_ALG4_825144671_19687_20589_1_2014_03_14_USA_Swine_PEDV K
KNU_141112_S_DEL2_nsp13_VIPR_ALG4_ASA40090_1_19732_20634_1_2016_01_South_Korea_Swine_PEDV K
USA_Minnesota79_2013_nsp13_VIPR_ALG4_658130512_19697_20599_1_2013_11_30_USA_Swine_PEDV K
GDS23_nsp13_VIPR_ALG4_AWV57053_1_19732_20634_1_2012_11_05_China_Swine_PEDV K
USA_Indiana195_2014_nsp13_VIPR_ALG4_825144657_19687_20589_1_2014_03_04_USA_Swine_PEDV K
PEDV_ROMANIA_L01330_K25_15_02_2015_nsp13_VIPR_ALG4_SNQ28044_1_19732_20634_1_NA_NA_Unknown_PEDV K
PEDV_10F_nsp13_VIPR_ALG4_761662529_19732_20634_1_2012_01_China_Swine_PEDV K
CH_hubei_2016_nsp13_VIPR_ALG4_ART84249_1_19731_20633_1_2016_03_China_Swine_PEDV K
CAN_Quebec334_2014_nsp13_VIPR_ALG4_825144874_19687_20589_1_2014_05_14_Canada_Swine_PEDV K
GDS28_nsp13_VIPR_ALG4_QCQ19857_1_19732_20634_1_2012_12_13_China_Swine_PEDV K
GDS40_nsp13_VIPR_ALG4_QCQ19965_1_19732_20634_1_2011_02_10_China_Swine_PEDV K
>USA_Minnesota85_2013_nsp13_VIPR_ALG4_658130540_19697_20599_1_2013_12_04_USA_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTACAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGATTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAGGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTCTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTCATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >PEDV_MEX_JAL_03_2017_nsp13_VIPR_ALG4_AVU05381_1_19562_20464_1_2017_02_10_Mexico_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTACAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGATTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAGGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTCTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTCATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGATTTTTCTAATCATTTGGTCAACGTAAACAAA >USA_Missouri337_2014_nsp13_VIPR_ALG4_825144797_19687_20589_1_2014_05_07_USA_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTACAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGATTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAGGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTCTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTCATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >KB2013_4_nsp13_VIPR_ALG4_1142619340_19732_20634_1_2013_China_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTACAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCCGTCTTACGAGGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTCACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGGTTGATTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAAAGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTAACAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCACTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTCATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >GDS01_nsp13_VIPR_ALG4_815939790_19732_20634_1_2012_11_10_China_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTATAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGACTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAATGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTTATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >KGS_4_JPN_2014_nsp13_VIPR_ALG4_948549235_19674_20576_1_2014_04_Japan_Pig_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTACAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGATTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAGGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTCTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTCATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >B5_HB2017_nsp13_VIPR_ALG4_AXK47357_1_19732_20634_1_2017_02_17_China_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTATAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATATACACAGCTTTGTCAATATCTTAATAGCACCACAATGTGTGTACCCCATCACATGCGCGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACGGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGACTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACTGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCACGTTCAATTGTAAGCATAAGGCTACAGTTGTTATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >PEDV_7C_nsp13_VIPR_ALG4_761662515_19732_20634_1_2011_06_China_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTATAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGACTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTTATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >KNU_1705_nsp13_VIPR_ALG4_AWM11473_1_19693_20595_1_2017_12_South_Korea_Swine_PEDV GCCAGTGAATGGAAATGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTATAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATATACACAGCTTTGTCAATATCTTAATAGCACCACAATGTGTGTACCCCATCACATGCGCGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACGGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGACTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAACGCTTCTTTCCCTATATTAATGGTGTCATCACTGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTTATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >HeN170821_nsp13_VIPR_ALG4_QGJ03658_1_19732_20634_1_2017_08_China_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAATCTTGCAATCTCTATAACTATGGCGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATATACACAGCTTTGTCAATATCTTAATAGCACCACAATGTGTGTACCCCATCACATGCGCGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTTTCAGATAAGTTTGACTTAGTTATATCTGATATGTATGACGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACTGAAAAGTTGGCACTTGGTGGTACTGTGGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTTATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTTATTAATTTAAAGGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >CH_SCZJ_2018_nsp13_VIPR_ALG4_AZL47227_1_19732_20634_1_2018_02_06_China_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTATAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTTTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTATGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGACTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATTTTCTGGCGTAATTCTACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTTATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >PEDV_AUSTRIA_L01065_M10_15_04_2015_nsp13_VIPR_ALG4_SNQ27929_1_19732_20634_1_NA_NA_Unknown_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAATCTTGCAATCTCTATAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATATACACAGCTTTGTCAATATCTTAATAGCACCACAATGTGTGTACCCCATCACATGCGCGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACGGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGACTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACTGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTTATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >PEDV_GER_L01420_K06_15_04_2015_nsp13_VIPR_ALG4_SNQ28075_1_19732_20634_1_NA_NA_Unknown_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAATCTTGCAATCTCTATAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATATACACAGCTTTGTCAATATCTTAATAGCACCACAATGTGTGTACCCCATCACATGCGCGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACGGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGACTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACTGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTTATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >TW_Yunlin550_2018_nsp13_VIPR_ALG4_QFP92270_1_19715_20617_1_2018_02_27_Taiwan_NA_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTACAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACACCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGATTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAGGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTCTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTCATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >USA_Ohio69_2013_nsp13_VIPR_ALG4_658130449_19697_20599_1_2013_11_24_USA_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTACAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGATTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAGGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTCTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTCATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >PEDV_GER_L00857_K14_14_04_2014_nsp13_VIPR_ALG4_SNQ28009_1_19713_20615_1_NA_NA_Unknown_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAATCTTGCAATCTCTATAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATATACACAGCTTTGTCAATATCTTAATAGCACCACAATGTGTGTACCCCATCACATGCGCGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACGGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGACTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACTGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTTATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >LC_nsp13_VIPR_ALG4_409034598_19732_20634_1_2011_02_China_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTACAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGATTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTTATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >CH_TP_4_3_2018_nsp13_VIPR_ALG4_QCC26594_1_19734_20237_1_2018_China_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTATAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATATACACAGCTTTGTCAATATCTTAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTAGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGTGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGACTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACTGACAAAGTT---------GGCACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGGTACTGTGGCTAT--------------------------- >USA_Tennesse56_2013_nsp13_VIPR_ALG4_658130372_19697_20599_1_2013_11_04_USA_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTACAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGATTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAGGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTCTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTCATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >USA_Illinois260_2014_nsp13_VIPR_ALG4_825144671_19687_20589_1_2014_03_14_USA_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTACAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGATTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAGGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTCTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTCATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >KNU_141112_S_DEL2_nsp13_VIPR_ALG4_ASA40090_1_19732_20634_1_2016_01_South_Korea_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTACAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGATTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAGGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTCTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTCATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >USA_Minnesota79_2013_nsp13_VIPR_ALG4_658130512_19697_20599_1_2013_11_30_USA_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTACAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGATTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAGGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTCTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTCATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >GDS23_nsp13_VIPR_ALG4_AWV57053_1_19732_20634_1_2012_11_05_China_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTACAACTATGGTGCTGGTATTAATTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGATTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTCATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >USA_Indiana195_2014_nsp13_VIPR_ALG4_825144657_19687_20589_1_2014_03_04_USA_Swine_PEDV GCTAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTACAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGATTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAGGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTCTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTCATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >PEDV_ROMANIA_L01330_K25_15_02_2015_nsp13_VIPR_ALG4_SNQ28044_1_19732_20634_1_NA_NA_Unknown_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAATCTTGCAATCTCTATAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATATACACAGCTTTGTCAATATCTTAATAGCACCACAATGTGTGTACCCCATCACATGCGCGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACGGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGACTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACTGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTTATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >PEDV_10F_nsp13_VIPR_ALG4_761662529_19732_20634_1_2012_01_China_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTACAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGATTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTCATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >CH_hubei_2016_nsp13_VIPR_ALG4_ART84249_1_19731_20633_1_2016_03_China_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTATAACTATGGCGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGATAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGACTTAGTTATATCTGATATGTATGACGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACTGAAAAGTTGGCACTTGGTGGTACTGTGGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTAGCGCTGTTATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTTATTAATTTAAAGGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >CAN_Quebec334_2014_nsp13_VIPR_ALG4_825144874_19687_20589_1_2014_05_14_Canada_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTACAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGATTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAGGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTCTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTCATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >GDS28_nsp13_VIPR_ALG4_QCQ19857_1_19732_20634_1_2012_12_13_China_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTATAACTATGGCGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGATAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGACTTAGTTATATCTGATATGTATGACGGTAAGATTAAAAGTTGTGATGGGGAGAACGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACTGAAAAGTTGGCACTTGGTGGTACTGTGGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTTATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTTATTAATTTAAAGGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA >GDS40_nsp13_VIPR_ALG4_QCQ19965_1_19732_20634_1_2011_02_10_China_Swine_PEDV GCCAGTGAATGGAAGTGTGGTTATTCCATGCCTTCTATTTACAAGATACAACGTATGTGTTTAGAACCTTGCAATCTCTATAACTATGGTGCTGGTATTAAGTTACCTGATGGCATTATGTTTAACGTAGTTAAATACACACAGCTTTGTCAATATCTCAATAGCACCACAATGTGTGTACCCCATCACATGCGTGTGCTACATCTTGGTGCTGGCTCCGACAAGGGTGTTGCACCTGGCACGGCTGTCTTACGACGTTGGTTGCCACTGGATGCCATTATAGTTGACAATGATAGTGTGGATTACGTTAGCGATGCTGATTATAGTGTTACAGGAGATTGCTCTACCTTATACCTGTCAGATAAGTTTGACTTAGTTATATCTGATATGTATGATGGTAAGATTAAAAGTTGTGATGGGGAGAATGTGTCTAAAGAAGGCTTCTTTCCCTATATTAATGGTGTCATCACCGAAAAGTTGGCACTTGGTGGTACTGTAGCTATTAAGGTGACGGAGTTTAGTTGGAATAAGAAGTTGTATGAACTCATTCAGAAGTTTGAGTATTGGACAATGTTCTGTACCAGTGTTAACACGTCATCGTCAGAGGCATTTTTAATTGGTGTTCACTATTTAGGTGATTTTGCAAGTGGCGCTGTGATTGACGGCAACACTATGCATGCCAATTATATCTTCTGGCGTAATTCCACAATTATGACTATGTCTTACAATAGTGTACTTGATTTAAGCAAGTTCAATTGTAAGCATAAGGCTACAGTTGTTATTAATTTAAAAGATTCATCCATTAGTGATGTTGTGTTAGGTTTGTTGAAGAATGGTAAGTTGCTAGTGCGTAATAATGACGCCATTTGTGGTTTTTCTAATCATTTGGTCAACGTAAACAAA
>USA_Minnesota85_2013_nsp13_VIPR_ALG4_658130540_19697_20599_1_2013_12_04_USA_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >PEDV_MEX_JAL_03_2017_nsp13_VIPR_ALG4_AVU05381_1_19562_20464_1_2017_02_10_Mexico_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICDFSNHLVNVNK >USA_Missouri337_2014_nsp13_VIPR_ALG4_825144797_19687_20589_1_2014_05_07_USA_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >KB2013_4_nsp13_VIPR_ALG4_1142619340_19732_20634_1_2013_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRGWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKVDLVISDMYDGKIKSCDGENVSKEGFFPYIKGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCNSVNTSSSEAFLIGVHYLGDFASGTVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >GDS01_nsp13_VIPR_ALG4_815939790_19732_20634_1_2012_11_10_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >KGS_4_JPN_2014_nsp13_VIPR_ALG4_948549235_19674_20576_1_2014_04_Japan_Pig_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >B5_HB2017_nsp13_VIPR_ALG4_AXK47357_1_19732_20634_1_2017_02_17_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSTFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >PEDV_7C_nsp13_VIPR_ALG4_761662515_19732_20634_1_2011_06_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >KNU_1705_nsp13_VIPR_ALG4_AWM11473_1_19693_20595_1_2017_12_South_Korea_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKERFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >HeN170821_nsp13_VIPR_ALG4_QGJ03658_1_19732_20634_1_2017_08_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLESCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >CH_SCZJ_2018_nsp13_VIPR_ALG4_AZL47227_1_19732_20634_1_2018_02_06_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >PEDV_AUSTRIA_L01065_M10_15_04_2015_nsp13_VIPR_ALG4_SNQ27929_1_19732_20634_1_NA_NA_Unknown_PEDV ASEWKCGYSMPSIYKIQRMCLESCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >PEDV_GER_L01420_K06_15_04_2015_nsp13_VIPR_ALG4_SNQ28075_1_19732_20634_1_NA_NA_Unknown_PEDV ASEWKCGYSMPSIYKIQRMCLESCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >TW_Yunlin550_2018_nsp13_VIPR_ALG4_QFP92270_1_19715_20617_1_2018_02_27_Taiwan_NA_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >USA_Ohio69_2013_nsp13_VIPR_ALG4_658130449_19697_20599_1_2013_11_24_USA_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >PEDV_GER_L00857_K14_14_04_2014_nsp13_VIPR_ALG4_SNQ28009_1_19713_20615_1_NA_NA_Unknown_PEDV ASEWKCGYSMPSIYKIQRMCLESCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >LC_nsp13_VIPR_ALG4_409034598_19732_20634_1_2011_02_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >CH_TP_4_3_2018_nsp13_VIPR_ALG4_QCC26594_1_19734_20237_1_2018_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITDKV---GT-------------------------------------------------------------------------------------------------------------------------WWYCGY--------- >USA_Tennesse56_2013_nsp13_VIPR_ALG4_658130372_19697_20599_1_2013_11_04_USA_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >USA_Illinois260_2014_nsp13_VIPR_ALG4_825144671_19687_20589_1_2014_03_14_USA_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >KNU_141112_S_DEL2_nsp13_VIPR_ALG4_ASA40090_1_19732_20634_1_2016_01_South_Korea_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >USA_Minnesota79_2013_nsp13_VIPR_ALG4_658130512_19697_20599_1_2013_11_30_USA_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >GDS23_nsp13_VIPR_ALG4_AWV57053_1_19732_20634_1_2012_11_05_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGINLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >USA_Indiana195_2014_nsp13_VIPR_ALG4_825144657_19687_20589_1_2014_03_04_USA_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >PEDV_ROMANIA_L01330_K25_15_02_2015_nsp13_VIPR_ALG4_SNQ28044_1_19732_20634_1_NA_NA_Unknown_PEDV ASEWKCGYSMPSIYKIQRMCLESCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >PEDV_10F_nsp13_VIPR_ALG4_761662529_19732_20634_1_2012_01_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >CH_hubei_2016_nsp13_VIPR_ALG4_ART84249_1_19731_20633_1_2016_03_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASSAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >CAN_Quebec334_2014_nsp13_VIPR_ALG4_825144874_19687_20589_1_2014_05_14_Canada_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQRFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >GDS28_nsp13_VIPR_ALG4_QCQ19857_1_19732_20634_1_2012_12_13_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK >GDS40_nsp13_VIPR_ALG4_QCQ19965_1_19732_20634_1_2011_02_10_China_Swine_PEDV ASEWKCGYSMPSIYKIQRMCLEPCNLYNYGAGIKLPDGIMFNVVKYTQLCQYLNSTTMCVPHHMRVLHLGAGSDKGVAPGTAVLRRWLPLDAIIVDNDSVDYVSDADYSVTGDCSTLYLSDKFDLVISDMYDGKIKSCDGENVSKEGFFPYINGVITEKLALGGTVAIKVTEFSWNKKLYELIQKFEYWTMFCTSVNTSSSEAFLIGVHYLGDFASGAVIDGNTMHANYIFWRNSTIMTMSYNSVLDLSKFNCKHKATVVINLKDSSISDVVLGLLKNGKLLVRNNDAICGFSNHLVNVNK
Reading sequence file /data//pss_subsets/LZW_nsp13_VIPR_ALG4_672096717_19732_20634_1_2012_02_China_Unknown_PEDV.result/original_alignment/codeml/fasta/LZW_nsp13_VIPR_ALG4_672096717_19732_20634_1_2012_02_China_Unknown_PEDV.result.1
Found 30 sequences of length 903
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 1.1%
Found 18 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0%100.0%
Using a window size of 80 with k as 2
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 29 polymorphic sites
**p-Value(s)**
----------
NSS: 2.30e-01 (1000 permutations)
Max Chi^2: 0.00e+00 (1000 permutations)
PHI (Permutation): 2.83e-01 (1000 permutations)
PHI (Normal): 1.65e-01
#NEXUS
[ID: 1252740066]
begin taxa;
dimensions ntax=30;
taxlabels
PEDV_AUSTRIA_L01065_M10_15_04_2015_nsp13_VIPR_ALG4_SNQ27929_1_19732_20634_1_NA_NA_Unknown_PEDV
CH_SCZJ_2018_nsp13_VIPR_ALG4_AZL47227_1_19732_20634_1_2018_02_06_China_Swine_PEDV
PEDV_GER_L01420_K06_15_04_2015_nsp13_VIPR_ALG4_SNQ28075_1_19732_20634_1_NA_NA_Unknown_PEDV
LC_nsp13_VIPR_ALG4_409034598_19732_20634_1_2011_02_China_Swine_PEDV
PEDV_GER_L00857_K14_14_04_2014_nsp13_VIPR_ALG4_SNQ28009_1_19713_20615_1_NA_NA_Unknown_PEDV
CH_TP_4_3_2018_nsp13_VIPR_ALG4_QCC26594_1_19734_20237_1_2018_China_Swine_PEDV
USA_Minnesota79_2013_nsp13_VIPR_ALG4_658130512_19697_20599_1_2013_11_30_USA_Swine_PEDV
KNU_141112_S_DEL2_nsp13_VIPR_ALG4_ASA40090_1_19732_20634_1_2016_01_South_Korea_Swine_PEDV
CH_hubei_2016_nsp13_VIPR_ALG4_ART84249_1_19731_20633_1_2016_03_China_Swine_PEDV
PEDV_10F_nsp13_VIPR_ALG4_761662529_19732_20634_1_2012_01_China_Swine_PEDV
KB2013_4_nsp13_VIPR_ALG4_1142619340_19732_20634_1_2013_China_Swine_PEDV
GDS40_nsp13_VIPR_ALG4_QCQ19965_1_19732_20634_1_2011_02_10_China_Swine_PEDV
PEDV_7C_nsp13_VIPR_ALG4_761662515_19732_20634_1_2011_06_China_Swine_PEDV
USA_Minnesota85_2013_nsp13_VIPR_ALG4_658130540_19697_20599_1_2013_12_04_USA_Swine_PEDV
USA_Missouri337_2014_nsp13_VIPR_ALG4_825144797_19687_20589_1_2014_05_07_USA_Swine_PEDV
PEDV_MEX_JAL_03_2017_nsp13_VIPR_ALG4_AVU05381_1_19562_20464_1_2017_02_10_Mexico_Swine_PEDV
KGS_4_JPN_2014_nsp13_VIPR_ALG4_948549235_19674_20576_1_2014_04_Japan_Pig_PEDV
GDS01_nsp13_VIPR_ALG4_815939790_19732_20634_1_2012_11_10_China_Swine_PEDV
B5_HB2017_nsp13_VIPR_ALG4_AXK47357_1_19732_20634_1_2017_02_17_China_Swine_PEDV
HeN170821_nsp13_VIPR_ALG4_QGJ03658_1_19732_20634_1_2017_08_China_Swine_PEDV
TW_Yunlin550_2018_nsp13_VIPR_ALG4_QFP92270_1_19715_20617_1_2018_02_27_Taiwan_NA_PEDV
USA_Ohio69_2013_nsp13_VIPR_ALG4_658130449_19697_20599_1_2013_11_24_USA_Swine_PEDV
USA_Illinois260_2014_nsp13_VIPR_ALG4_825144671_19687_20589_1_2014_03_14_USA_Swine_PEDV
USA_Tennesse56_2013_nsp13_VIPR_ALG4_658130372_19697_20599_1_2013_11_04_USA_Swine_PEDV
PEDV_ROMANIA_L01330_K25_15_02_2015_nsp13_VIPR_ALG4_SNQ28044_1_19732_20634_1_NA_NA_Unknown_PEDV
GDS23_nsp13_VIPR_ALG4_AWV57053_1_19732_20634_1_2012_11_05_China_Swine_PEDV
USA_Indiana195_2014_nsp13_VIPR_ALG4_825144657_19687_20589_1_2014_03_04_USA_Swine_PEDV
KNU_1705_nsp13_VIPR_ALG4_AWM11473_1_19693_20595_1_2017_12_South_Korea_Swine_PEDV
GDS28_nsp13_VIPR_ALG4_QCQ19857_1_19732_20634_1_2012_12_13_China_Swine_PEDV
CAN_Quebec334_2014_nsp13_VIPR_ALG4_825144874_19687_20589_1_2014_05_14_Canada_Swine_PEDV
;
end;
begin trees;
translate
1 PEDV_AUSTRIA_L01065_M10_15_04_2015_nsp13_VIPR_ALG4_SNQ27929_1_19732_20634_1_NA_NA_Unknown_PEDV,
2 CH_SCZJ_2018_nsp13_VIPR_ALG4_AZL47227_1_19732_20634_1_2018_02_06_China_Swine_PEDV,
3 PEDV_GER_L01420_K06_15_04_2015_nsp13_VIPR_ALG4_SNQ28075_1_19732_20634_1_NA_NA_Unknown_PEDV,
4 LC_nsp13_VIPR_ALG4_409034598_19732_20634_1_2011_02_China_Swine_PEDV,
5 PEDV_GER_L00857_K14_14_04_2014_nsp13_VIPR_ALG4_SNQ28009_1_19713_20615_1_NA_NA_Unknown_PEDV,
6 CH_TP_4_3_2018_nsp13_VIPR_ALG4_QCC26594_1_19734_20237_1_2018_China_Swine_PEDV,
7 USA_Minnesota79_2013_nsp13_VIPR_ALG4_658130512_19697_20599_1_2013_11_30_USA_Swine_PEDV,
8 KNU_141112_S_DEL2_nsp13_VIPR_ALG4_ASA40090_1_19732_20634_1_2016_01_South_Korea_Swine_PEDV,
9 CH_hubei_2016_nsp13_VIPR_ALG4_ART84249_1_19731_20633_1_2016_03_China_Swine_PEDV,
10 PEDV_10F_nsp13_VIPR_ALG4_761662529_19732_20634_1_2012_01_China_Swine_PEDV,
11 KB2013_4_nsp13_VIPR_ALG4_1142619340_19732_20634_1_2013_China_Swine_PEDV,
12 GDS40_nsp13_VIPR_ALG4_QCQ19965_1_19732_20634_1_2011_02_10_China_Swine_PEDV,
13 PEDV_7C_nsp13_VIPR_ALG4_761662515_19732_20634_1_2011_06_China_Swine_PEDV,
14 USA_Minnesota85_2013_nsp13_VIPR_ALG4_658130540_19697_20599_1_2013_12_04_USA_Swine_PEDV,
15 USA_Missouri337_2014_nsp13_VIPR_ALG4_825144797_19687_20589_1_2014_05_07_USA_Swine_PEDV,
16 PEDV_MEX_JAL_03_2017_nsp13_VIPR_ALG4_AVU05381_1_19562_20464_1_2017_02_10_Mexico_Swine_PEDV,
17 KGS_4_JPN_2014_nsp13_VIPR_ALG4_948549235_19674_20576_1_2014_04_Japan_Pig_PEDV,
18 GDS01_nsp13_VIPR_ALG4_815939790_19732_20634_1_2012_11_10_China_Swine_PEDV,
19 B5_HB2017_nsp13_VIPR_ALG4_AXK47357_1_19732_20634_1_2017_02_17_China_Swine_PEDV,
20 HeN170821_nsp13_VIPR_ALG4_QGJ03658_1_19732_20634_1_2017_08_China_Swine_PEDV,
21 TW_Yunlin550_2018_nsp13_VIPR_ALG4_QFP92270_1_19715_20617_1_2018_02_27_Taiwan_NA_PEDV,
22 USA_Ohio69_2013_nsp13_VIPR_ALG4_658130449_19697_20599_1_2013_11_24_USA_Swine_PEDV,
23 USA_Illinois260_2014_nsp13_VIPR_ALG4_825144671_19687_20589_1_2014_03_14_USA_Swine_PEDV,
24 USA_Tennesse56_2013_nsp13_VIPR_ALG4_658130372_19697_20599_1_2013_11_04_USA_Swine_PEDV,
25 PEDV_ROMANIA_L01330_K25_15_02_2015_nsp13_VIPR_ALG4_SNQ28044_1_19732_20634_1_NA_NA_Unknown_PEDV,
26 GDS23_nsp13_VIPR_ALG4_AWV57053_1_19732_20634_1_2012_11_05_China_Swine_PEDV,
27 USA_Indiana195_2014_nsp13_VIPR_ALG4_825144657_19687_20589_1_2014_03_04_USA_Swine_PEDV,
28 KNU_1705_nsp13_VIPR_ALG4_AWM11473_1_19693_20595_1_2017_12_South_Korea_Swine_PEDV,
29 GDS28_nsp13_VIPR_ALG4_QCQ19857_1_19732_20634_1_2012_12_13_China_Swine_PEDV,
30 CAN_Quebec334_2014_nsp13_VIPR_ALG4_825144874_19687_20589_1_2014_05_14_Canada_Swine_PEDV
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:4.467117e-04,3:4.571887e-04,5:4.337431e-04,25:4.316747e-04,((((2:3.006350e-03,(4:4.778856e-04,((7:4.558007e-04,8:4.448268e-04,14:4.539473e-04,15:4.379627e-04,16:1.077019e-03,17:4.482435e-04,21:1.098859e-03,22:4.385632e-04,23:4.411680e-04,24:4.310471e-04,27:1.062610e-03,30:4.592675e-04)1.000:1.726311e-03,10:4.314340e-04,11:4.866351e-03,26:1.100448e-03)0.963:1.104672e-03)0.999:1.769842e-03,(12:4.512691e-04,18:4.373244e-04)0.985:1.083296e-03,13:4.417695e-04)0.918:1.703354e-03,((9:1.065252e-03,29:4.454285e-04)0.968:1.714568e-03,20:2.921416e-03)0.999:3.602783e-03)0.610:1.512002e-03,6:1.639346e-02)0.968:1.692543e-03,19:1.103645e-03,28:1.684371e-03)0.942:1.068757e-03);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:4.467117e-04,3:4.571887e-04,5:4.337431e-04,25:4.316747e-04,((((2:3.006350e-03,(4:4.778856e-04,((7:4.558007e-04,8:4.448268e-04,14:4.539473e-04,15:4.379627e-04,16:1.077019e-03,17:4.482435e-04,21:1.098859e-03,22:4.385632e-04,23:4.411680e-04,24:4.310471e-04,27:1.062610e-03,30:4.592675e-04):1.726311e-03,10:4.314340e-04,11:4.866351e-03,26:1.100448e-03):1.104672e-03):1.769842e-03,(12:4.512691e-04,18:4.373244e-04):1.083296e-03,13:4.417695e-04):1.703354e-03,((9:1.065252e-03,29:4.454285e-04):1.714568e-03,20:2.921416e-03):3.602783e-03):1.512002e-03,6:1.639346e-02):1.692543e-03,19:1.103645e-03,28:1.684371e-03):1.068757e-03);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1653.94 -1676.30
2 -1652.62 -1682.94
--------------------------------------
TOTAL -1653.08 -1682.24
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.080077 0.000151 0.057120 0.104135 0.079325 1397.17 1449.09 1.000
r(A<->C){all} 0.078155 0.001420 0.014506 0.152099 0.072862 517.11 611.41 1.000
r(A<->G){all} 0.151943 0.001971 0.070411 0.238477 0.147858 684.65 700.80 1.000
r(A<->T){all} 0.055661 0.000522 0.013964 0.099697 0.052841 754.43 788.50 1.000
r(C<->G){all} 0.130538 0.002488 0.043501 0.229678 0.125639 590.01 626.82 1.001
r(C<->T){all} 0.483264 0.004115 0.364641 0.609576 0.483341 582.08 643.32 1.000
r(G<->T){all} 0.100439 0.001174 0.040314 0.169890 0.096759 794.96 828.03 1.000
pi(A){all} 0.271920 0.000207 0.240946 0.297693 0.271871 926.02 1147.60 1.000
pi(C){all} 0.158671 0.000142 0.136496 0.182858 0.158315 1023.34 1186.96 1.000
pi(G){all} 0.226441 0.000190 0.200935 0.253823 0.226382 897.20 1070.35 1.000
pi(T){all} 0.342968 0.000237 0.311860 0.370827 0.342813 959.85 1084.94 1.000
alpha{1,2} 0.541687 0.542870 0.000216 2.028585 0.263105 1065.04 1157.11 1.000
alpha{3} 1.768216 1.325128 0.200898 4.057239 1.503356 1436.92 1468.96 1.000
pinvar{all} 0.279626 0.028838 0.000056 0.565169 0.274081 605.50 707.70 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/LZW_nsp13_VIPR_ALG4_672096717_19732_20634_1_2012_02_China_Unknown_PEDV.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 30 ls = 168
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 4 4 4 3 4 4 | Ser TCT 4 4 4 4 4 4 | Tyr TAT 6 6 6 6 7 6 | Cys TGT 6 6 6 6 6 6
TTC 1 1 1 1 1 1 | TCC 2 2 2 2 2 2 | TAC 5 5 5 5 4 5 | TGC 2 2 2 2 2 2
Leu TTA 5 5 5 5 5 5 | TCA 1 1 1 1 1 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 2 2 2 2 2 2 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 2 2 2 2 2 2 | Pro CCT 4 4 4 4 4 4 | His CAT 2 2 2 2 2 2 | Arg CGT 3 3 3 2 3 3
CTC 2 2 2 2 2 2 | CCC 2 2 2 2 2 2 | CAC 1 1 1 1 1 1 | CGC 0 0 0 0 0 0
CTA 1 1 1 1 1 1 | CCA 1 1 1 1 1 1 | Gln CAA 2 2 2 2 2 2 | CGA 1 1 1 1 1 1
CTG 2 2 2 2 2 2 | CCG 0 0 0 0 0 0 | CAG 1 1 1 1 1 1 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 7 7 7 7 7 7 | Thr ACT 1 1 1 1 1 1 | Asn AAT 4 4 4 3 5 4 | Ser AGT 4 4 4 4 4 4
ATC 1 1 1 1 1 1 | ACC 3 3 3 3 3 3 | AAC 3 3 3 3 2 3 | AGC 2 2 2 2 2 2
ATA 3 3 3 3 3 3 | ACA 3 3 3 3 3 3 | Lys AAA 3 3 3 4 3 3 | Arg AGA 0 0 0 0 0 0
Met ATG 6 6 6 6 6 6 | ACG 1 1 1 1 1 1 | AAG 7 7 7 7 7 7 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 6 6 6 6 6 6 | Ala GCT 4 4 4 3 4 4 | Asp GAT 12 13 12 12 11 12 | Gly GGT 9 8 9 10 9 9
GTC 2 2 2 3 2 2 | GCC 3 3 3 4 3 3 | GAC 3 3 3 3 4 3 | GGC 4 4 4 4 4 4
GTA 2 2 2 2 2 2 | GCA 1 1 1 1 1 1 | Glu GAA 4 4 4 4 4 4 | GGA 1 1 1 1 1 1
GTG 3 3 3 3 3 3 | GCG 0 0 0 0 0 0 | GAG 1 1 1 1 1 1 | GGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 4 4 4 4 4 4 | Ser TCT 4 4 4 5 4 5 | Tyr TAT 8 7 8 8 8 8 | Cys TGT 6 6 6 6 6 6
TTC 1 1 1 1 1 1 | TCC 2 2 2 2 2 2 | TAC 3 4 3 3 3 3 | TGC 2 2 2 2 2 2
Leu TTA 5 5 5 5 5 5 | TCA 1 1 1 1 1 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 2 2 2 2 2 2 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 3 2 3 4 2 3 | Pro CCT 4 4 4 3 4 3 | His CAT 2 2 2 2 2 2 | Arg CGT 2 3 2 2 3 2
CTC 1 2 1 1 2 1 | CCC 2 2 2 2 2 2 | CAC 1 1 1 1 1 1 | CGC 1 0 2 1 0 1
CTA 1 1 1 1 1 1 | CCA 1 1 1 1 1 1 | Gln CAA 2 2 2 2 2 2 | CGA 1 1 1 1 1 1
CTG 2 2 2 1 2 2 | CCG 0 0 0 0 0 0 | CAG 1 1 1 1 1 1 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 7 7 7 7 7 7 | Thr ACT 2 1 2 2 1 2 | Asn AAT 4 4 4 4 4 4 | Ser AGT 4 4 4 4 4 4
ATC 1 1 1 1 1 1 | ACC 2 3 2 2 3 2 | AAC 3 3 3 3 3 3 | AGC 2 2 2 2 2 2
ATA 3 3 3 3 3 3 | ACA 2 3 2 3 3 2 | Lys AAA 3 3 4 3 3 3 | Arg AGA 0 0 0 0 0 0
Met ATG 6 6 6 6 6 6 | ACG 2 1 2 1 1 2 | AAG 7 7 6 7 7 7 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 6 6 6 6 7 6 | Ala GCT 4 4 4 4 4 4 | Asp GAT 11 11 11 10 11 11 | Gly GGT 9 9 9 8 9 9
GTC 2 2 2 2 1 2 | GCC 3 3 3 3 3 3 | GAC 4 4 4 5 4 4 | GGC 4 4 3 5 4 4
GTA 2 2 2 2 2 2 | GCA 1 1 1 1 1 1 | Glu GAA 4 4 4 4 4 4 | GGA 1 1 1 1 1 1
GTG 3 3 3 3 3 3 | GCG 0 0 0 0 0 0 | GAG 1 1 1 1 1 1 | GGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 4 4 4 4 4 3 | Ser TCT 5 4 4 5 4 4 | Tyr TAT 8 6 6 8 6 9 | Cys TGT 6 6 6 6 6 6
TTC 1 1 1 1 1 1 | TCC 2 2 2 2 2 2 | TAC 3 5 5 3 5 4 | TGC 2 2 2 2 2 2
Leu TTA 5 5 5 5 5 5 | TCA 1 1 1 1 1 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 2 2 2 2 2 1 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 2 2 2 2 2 4
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 3 2 2 3 2 3 | Pro CCT 3 4 4 3 4 4 | His CAT 2 1 2 2 2 2 | Arg CGT 2 3 3 2 3 3
CTC 1 2 2 1 2 1 | CCC 2 2 2 2 2 2 | CAC 1 2 1 1 1 1 | CGC 1 0 0 1 0 0
CTA 1 1 1 1 1 1 | CCA 1 1 1 1 1 1 | Gln CAA 2 2 2 2 2 2 | CGA 1 1 1 1 1 1
CTG 2 2 2 2 2 2 | CCG 0 0 0 0 0 0 | CAG 1 1 1 1 1 1 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 7 7 7 7 7 6 | Thr ACT 2 1 1 2 1 2 | Asn AAT 4 4 4 4 4 4 | Ser AGT 4 4 4 4 4 5
ATC 1 1 1 1 1 1 | ACC 2 3 3 2 3 2 | AAC 3 3 3 3 3 3 | AGC 2 2 2 2 2 1
ATA 3 3 3 3 3 3 | ACA 2 3 3 2 3 3 | Lys AAA 3 3 3 3 3 4 | Arg AGA 0 0 0 0 0 0
Met ATG 6 6 6 6 6 6 | ACG 2 1 1 2 1 1 | AAG 7 7 7 7 7 6 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 6 6 6 6 6 6 | Ala GCT 4 4 4 4 4 4 | Asp GAT 11 12 12 11 12 11 | Gly GGT 9 9 9 9 9 7
GTC 2 2 2 2 2 2 | GCC 3 3 3 3 3 2 | GAC 4 3 3 4 3 4 | GGC 4 4 4 4 4 6
GTA 2 2 2 2 2 3 | GCA 1 1 1 1 1 1 | Glu GAA 4 4 4 4 4 3 | GGA 1 1 1 1 1 1
GTG 3 3 3 3 3 3 | GCG 0 0 0 0 0 0 | GAG 1 1 1 1 1 1 | GGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 4 4 4 4 4 4 | Ser TCT 4 4 4 4 4 4 | Tyr TAT 6 6 6 6 6 6 | Cys TGT 6 6 6 6 6 6
TTC 1 1 1 1 1 1 | TCC 2 2 2 2 2 2 | TAC 5 5 5 5 5 5 | TGC 2 2 2 2 2 2
Leu TTA 5 5 5 5 5 5 | TCA 1 1 1 1 1 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 2 2 2 2 2 2 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 2 2 2 2 2 2 | Pro CCT 4 4 4 4 4 4 | His CAT 2 2 2 2 2 2 | Arg CGT 3 3 3 3 3 3
CTC 2 2 2 2 2 2 | CCC 2 2 2 2 2 2 | CAC 1 1 1 1 1 1 | CGC 0 0 0 0 0 0
CTA 1 1 1 1 1 1 | CCA 1 1 1 1 1 1 | Gln CAA 2 2 2 2 2 2 | CGA 1 1 1 1 1 1
CTG 2 2 2 2 2 2 | CCG 0 0 0 0 0 0 | CAG 1 1 1 1 1 1 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 7 7 7 7 7 7 | Thr ACT 1 1 1 1 1 1 | Asn AAT 4 4 4 4 5 4 | Ser AGT 4 4 4 4 4 4
ATC 1 1 1 1 1 1 | ACC 3 3 3 3 3 3 | AAC 3 3 3 3 3 3 | AGC 2 2 2 2 2 2
ATA 3 3 3 3 3 3 | ACA 3 3 3 3 3 3 | Lys AAA 3 3 3 3 3 3 | Arg AGA 0 0 0 0 0 0
Met ATG 6 6 6 6 6 6 | ACG 1 1 1 1 1 1 | AAG 7 7 7 7 6 7 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 6 6 6 6 6 6 | Ala GCT 4 4 4 4 4 5 | Asp GAT 12 12 12 12 12 12 | Gly GGT 9 9 9 9 9 9
GTC 2 2 2 2 2 2 | GCC 3 3 3 3 3 2 | GAC 3 3 3 3 3 3 | GGC 4 4 4 4 4 4
GTA 2 2 2 2 2 2 | GCA 1 1 1 1 1 1 | Glu GAA 4 4 4 4 4 4 | GGA 1 1 1 1 1 1
GTG 3 3 3 3 3 3 | GCG 0 0 0 0 0 0 | GAG 1 1 1 1 1 1 | GGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 4 4 4 4 4 4 | Ser TCT 5 4 4 4 4 4 | Tyr TAT 8 6 7 6 7 7 | Cys TGT 6 6 6 6 6 6
TTC 1 1 1 1 1 1 | TCC 2 2 2 2 2 2 | TAC 3 5 4 5 4 4 | TGC 2 2 2 2 2 2
Leu TTA 5 5 5 5 5 5 | TCA 1 1 1 1 1 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 2 2 2 2 2 2 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 3 2 2 2 2 2 | Pro CCT 3 4 4 4 4 4 | His CAT 2 2 2 2 2 2 | Arg CGT 2 3 3 3 3 3
CTC 1 2 2 2 2 2 | CCC 2 2 2 2 2 2 | CAC 1 1 1 1 1 1 | CGC 1 0 0 0 0 0
CTA 1 1 1 1 1 1 | CCA 1 1 1 1 1 1 | Gln CAA 2 2 2 2 2 2 | CGA 1 1 1 1 1 1
CTG 2 2 2 2 2 2 | CCG 0 0 0 0 0 0 | CAG 1 1 1 1 1 1 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 7 7 7 7 7 7 | Thr ACT 2 1 2 1 2 1 | Asn AAT 4 4 4 4 4 5 | Ser AGT 4 4 4 4 4 4
ATC 1 1 1 1 1 1 | ACC 2 3 2 3 2 3 | AAC 3 3 3 3 3 2 | AGC 2 2 2 2 2 2
ATA 3 3 3 3 3 3 | ACA 2 3 3 3 3 3 | Lys AAA 3 3 3 3 3 3 | Arg AGA 0 0 0 0 0 0
Met ATG 6 6 6 6 6 6 | ACG 2 1 1 1 1 1 | AAG 7 7 7 7 7 7 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 6 6 6 6 6 6 | Ala GCT 4 4 4 4 4 4 | Asp GAT 11 12 11 12 11 11 | Gly GGT 9 9 8 9 8 9
GTC 2 2 2 2 2 2 | GCC 3 3 3 3 3 3 | GAC 4 3 4 3 4 4 | GGC 4 4 5 4 5 4
GTA 2 2 2 2 2 2 | GCA 1 1 1 1 1 1 | Glu GAA 4 4 4 4 4 4 | GGA 1 1 1 1 1 1
GTG 3 3 3 3 3 3 | GCG 0 0 0 0 0 0 | GAG 1 1 1 1 1 1 | GGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C551
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.46429 C:0.21429 A:0.16667 G:0.15476
Average T:0.33135 C:0.17857 A:0.25794 G:0.23214
#2: C370
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32738 G:0.20238
position 3: T:0.46429 C:0.21429 A:0.16667 G:0.15476
Average T:0.33135 C:0.17857 A:0.25992 G:0.23016
#3: C563
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.46429 C:0.21429 A:0.16667 G:0.15476
Average T:0.33135 C:0.17857 A:0.25794 G:0.23214
#4: C218
position 1: T:0.23214 C:0.13690 A:0.28571 G:0.34524
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.44643 C:0.22619 A:0.17262 G:0.15476
Average T:0.32341 C:0.18056 A:0.25992 G:0.23611
#5: C112
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.47024 C:0.20833 A:0.16667 G:0.15476
Average T:0.33333 C:0.17659 A:0.25794 G:0.23214
#6: C223
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.46429 C:0.21429 A:0.16667 G:0.15476
Average T:0.33135 C:0.17857 A:0.25794 G:0.23214
#7: C24
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.47619 C:0.20238 A:0.16071 G:0.16071
Average T:0.33532 C:0.17460 A:0.25595 G:0.23413
#8: C316
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.46429 C:0.21429 A:0.16667 G:0.15476
Average T:0.33135 C:0.17857 A:0.25794 G:0.23214
#9: C239
position 1: T:0.23810 C:0.14881 A:0.28571 G:0.32738
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.47619 C:0.20238 A:0.16667 G:0.15476
Average T:0.33532 C:0.17659 A:0.25794 G:0.23016
#10: C185
position 1: T:0.24405 C:0.13690 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.47024 C:0.21429 A:0.16667 G:0.14881
Average T:0.33532 C:0.17659 A:0.25794 G:0.23016
#11: C66
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.47619 C:0.20238 A:0.16667 G:0.15476
Average T:0.33532 C:0.17460 A:0.25794 G:0.23214
#12: C321
position 1: T:0.24405 C:0.13690 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.47619 C:0.20238 A:0.16071 G:0.16071
Average T:0.33730 C:0.17262 A:0.25595 G:0.23413
#13: C355
position 1: T:0.24405 C:0.13690 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.47619 C:0.20238 A:0.16071 G:0.16071
Average T:0.33730 C:0.17262 A:0.25595 G:0.23413
#14: C431
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.45833 C:0.22024 A:0.16667 G:0.15476
Average T:0.32937 C:0.18056 A:0.25794 G:0.23214
#15: C587
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.46429 C:0.21429 A:0.16667 G:0.15476
Average T:0.33135 C:0.17857 A:0.25794 G:0.23214
#16: C327
position 1: T:0.24405 C:0.13690 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.47619 C:0.20238 A:0.16071 G:0.16071
Average T:0.33730 C:0.17262 A:0.25595 G:0.23413
#17: C263
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.46429 C:0.21429 A:0.16667 G:0.15476
Average T:0.33135 C:0.17857 A:0.25794 G:0.23214
#18: C72
position 1: T:0.25000 C:0.14286 A:0.27976 G:0.32738
position 2: T:0.27976 C:0.17262 A:0.32738 G:0.22024
position 3: T:0.47024 C:0.20238 A:0.17262 G:0.15476
Average T:0.33333 C:0.17262 A:0.25992 G:0.23413
#19: C599
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.46429 C:0.21429 A:0.16667 G:0.15476
Average T:0.33135 C:0.17857 A:0.25794 G:0.23214
#20: C461
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.46429 C:0.21429 A:0.16667 G:0.15476
Average T:0.33135 C:0.17857 A:0.25794 G:0.23214
#21: C232
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.46429 C:0.21429 A:0.16667 G:0.15476
Average T:0.33135 C:0.17857 A:0.25794 G:0.23214
#22: C548
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.46429 C:0.21429 A:0.16667 G:0.15476
Average T:0.33135 C:0.17857 A:0.25794 G:0.23214
#23: C130
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.47024 C:0.21429 A:0.16667 G:0.14881
Average T:0.33333 C:0.17857 A:0.25794 G:0.23016
#24: C473
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.47024 C:0.20833 A:0.16667 G:0.15476
Average T:0.33333 C:0.17659 A:0.25794 G:0.23214
#25: C388
position 1: T:0.24405 C:0.13690 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.47619 C:0.20238 A:0.16071 G:0.16071
Average T:0.33730 C:0.17262 A:0.25595 G:0.23413
#26: C311
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.46429 C:0.21429 A:0.16667 G:0.15476
Average T:0.33135 C:0.17857 A:0.25794 G:0.23214
#27: C78
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.46429 C:0.21429 A:0.16667 G:0.15476
Average T:0.33135 C:0.17857 A:0.25794 G:0.23214
#28: C29
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.46429 C:0.21429 A:0.16667 G:0.15476
Average T:0.33135 C:0.17857 A:0.25794 G:0.23214
#29: C136
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.46429 C:0.21429 A:0.16667 G:0.15476
Average T:0.33135 C:0.17857 A:0.25794 G:0.23214
#30: C149
position 1: T:0.23810 C:0.14286 A:0.28571 G:0.33333
position 2: T:0.29167 C:0.17857 A:0.32143 G:0.20833
position 3: T:0.47024 C:0.20833 A:0.16667 G:0.15476
Average T:0.33333 C:0.17659 A:0.25794 G:0.23214
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 118 | Ser S TCT 125 | Tyr Y TAT 204 | Cys C TGT 180
TTC 30 | TCC 60 | TAC 128 | TGC 60
Leu L TTA 150 | TCA 30 | *** * TAA 0 | *** * TGA 0
TTG 59 | TCG 0 | TAG 0 | Trp W TGG 62
------------------------------------------------------------------------------
Leu L CTT 69 | Pro P CCT 115 | His H CAT 59 | Arg R CGT 82
CTC 52 | CCC 60 | CAC 31 | CGC 8
CTA 30 | CCA 30 | Gln Q CAA 60 | CGA 30
CTG 59 | CCG 0 | CAG 30 | CGG 0
------------------------------------------------------------------------------
Ile I ATT 209 | Thr T ACT 40 | Asn N AAT 122 | Ser S AGT 121
ATC 30 | ACC 80 | AAC 88 | AGC 59
ATA 90 | ACA 84 | Lys K AAA 93 | Arg R AGA 0
Met M ATG 180 | ACG 36 | AAG 207 | AGG 0
------------------------------------------------------------------------------
Val V GTT 181 | Ala A GCT 120 | Asp D GAT 346 | Gly G GGT 265
GTC 60 | GCC 89 | GAC 105 | GGC 124
GTA 61 | GCA 30 | Glu E GAA 119 | GGA 30
GTG 90 | GCG 0 | GAG 30 | GGG 30
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.23929 C:0.14187 A:0.28552 G:0.33333
position 2: T:0.29127 C:0.17837 A:0.32183 G:0.20853
position 3: T:0.46746 C:0.21111 A:0.16607 G:0.15536
Average T:0.33267 C:0.17712 A:0.25780 G:0.23241
Model 1: NearlyNeutral (2 categories)
TREE # 1: (12, 13, 16, 25, ((((11, (17, ((22, 21, 1, 3, 2, 6, 14, 15, 20, 19, 24, 28), 26, 4, 23)), (30, 5), 8), ((27, 29), 10)), 18), 7, 9)); MP score: 41
lnL(ntime: 40 np: 43): -948.458426 +0.000000
31..12 31..13 31..16 31..25 31..32 32..33 33..34 34..35 35..11 35..36 36..17 36..37 37..38 38..22 38..21 38..1 38..3 38..2 38..6 38..14 38..15 38..20 38..19 38..24 38..28 37..26 37..4 37..23 35..39 39..30 39..5 35..8 34..40 40..41 41..27 41..29 40..10 33..18 32..7 32..9
0.000004 0.000004 0.000004 0.000004 0.006295 0.013444 0.011392 0.007067 0.012630 0.012597 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.006280 0.000004 0.006278 0.000004 0.000004 0.000004 0.006288 0.000004 0.000004 0.032132 0.006256 0.006284 0.000004 0.000004 0.000004 0.012728 0.006919 0.000004 0.000004 0.031269 0.129354 0.000004 0.012715 2.034739 0.844356 0.000001
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.320020
(12: 0.000004, 13: 0.000004, 16: 0.000004, 25: 0.000004, ((((11: 0.012630, (17: 0.000004, ((22: 0.000004, 21: 0.000004, 1: 0.000004, 3: 0.000004, 2: 0.006280, 6: 0.000004, 14: 0.006278, 15: 0.000004, 20: 0.000004, 19: 0.000004, 24: 0.006288, 28: 0.000004): 0.000004, 26: 0.000004, 4: 0.032132, 23: 0.006256): 0.000004): 0.012597, (30: 0.000004, 5: 0.000004): 0.006284, 8: 0.000004): 0.007067, ((27: 0.000004, 29: 0.000004): 0.006919, 10: 0.031269): 0.012728): 0.011392, 18: 0.129354): 0.013444, 7: 0.000004, 9: 0.012715): 0.006295);
(C321: 0.000004, C355: 0.000004, C327: 0.000004, C388: 0.000004, ((((C66: 0.012630, (C263: 0.000004, ((C548: 0.000004, C232: 0.000004, C551: 0.000004, C563: 0.000004, C370: 0.006280, C223: 0.000004, C431: 0.006278, C587: 0.000004, C461: 0.000004, C599: 0.000004, C473: 0.006288, C29: 0.000004): 0.000004, C311: 0.000004, C218: 0.032132, C130: 0.006256): 0.000004): 0.012597, (C149: 0.000004, C112: 0.000004): 0.006284, C316: 0.000004): 0.007067, ((C78: 0.000004, C136: 0.000004): 0.006919, C185: 0.031269): 0.012728): 0.011392, C72: 0.129354): 0.013444, C24: 0.000004, C239: 0.012715): 0.006295);
Detailed output identifying parameters
kappa (ts/tv) = 2.03474
MLEs of dN/dS (w) for site classes (K=2)
p: 0.84436 0.15564
w: 0.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
31..13 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
31..16 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
31..25 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
31..32 0.006 396.5 107.5 0.1556 0.0010 0.0062 0.4 0.7
32..33 0.013 396.5 107.5 0.1556 0.0021 0.0133 0.8 1.4
33..34 0.011 396.5 107.5 0.1556 0.0018 0.0113 0.7 1.2
34..35 0.007 396.5 107.5 0.1556 0.0011 0.0070 0.4 0.8
35..11 0.013 396.5 107.5 0.1556 0.0020 0.0125 0.8 1.3
35..36 0.013 396.5 107.5 0.1556 0.0019 0.0125 0.8 1.3
36..17 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
36..37 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
37..38 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
38..22 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
38..21 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
38..1 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
38..3 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
38..2 0.006 396.5 107.5 0.1556 0.0010 0.0062 0.4 0.7
38..6 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
38..14 0.006 396.5 107.5 0.1556 0.0010 0.0062 0.4 0.7
38..15 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
38..20 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
38..19 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
38..24 0.006 396.5 107.5 0.1556 0.0010 0.0062 0.4 0.7
38..28 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
37..26 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
37..4 0.032 396.5 107.5 0.1556 0.0050 0.0319 2.0 3.4
37..23 0.006 396.5 107.5 0.1556 0.0010 0.0062 0.4 0.7
35..39 0.006 396.5 107.5 0.1556 0.0010 0.0062 0.4 0.7
39..30 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
39..5 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
35..8 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
34..40 0.013 396.5 107.5 0.1556 0.0020 0.0126 0.8 1.4
40..41 0.007 396.5 107.5 0.1556 0.0011 0.0069 0.4 0.7
41..27 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
41..29 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
40..10 0.031 396.5 107.5 0.1556 0.0048 0.0310 1.9 3.3
33..18 0.129 396.5 107.5 0.1556 0.0200 0.1284 7.9 13.8
32..7 0.000 396.5 107.5 0.1556 0.0000 0.0000 0.0 0.0
32..9 0.013 396.5 107.5 0.1556 0.0020 0.0126 0.8 1.4
Time used: 2:18
Model 2: PositiveSelection (3 categories)
TREE # 1: (12, 13, 16, 25, ((((11, (17, ((22, 21, 1, 3, 2, 6, 14, 15, 20, 19, 24, 28), 26, 4, 23)), (30, 5), 8), ((27, 29), 10)), 18), 7, 9)); MP score: 41
check convergence..
lnL(ntime: 40 np: 45): -947.791991 +0.000000
31..12 31..13 31..16 31..25 31..32 32..33 33..34 34..35 35..11 35..36 36..17 36..37 37..38 38..22 38..21 38..1 38..3 38..2 38..6 38..14 38..15 38..20 38..19 38..24 38..28 37..26 37..4 37..23 35..39 39..30 39..5 35..8 34..40 40..41 41..27 41..29 40..10 33..18 32..7 32..9
0.000004 0.000004 0.000004 0.000004 0.006392 0.013701 0.011641 0.007176 0.012843 0.012812 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.006383 0.000004 0.006380 0.000004 0.000004 0.000004 0.006390 0.000004 0.000004 0.032588 0.006355 0.006386 0.000004 0.000004 0.000004 0.012949 0.007044 0.000004 0.000004 0.031847 0.136120 0.000004 0.012938 2.188126 0.945185 0.000000 0.053856 2.701545
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.330039
(12: 0.000004, 13: 0.000004, 16: 0.000004, 25: 0.000004, ((((11: 0.012843, (17: 0.000004, ((22: 0.000004, 21: 0.000004, 1: 0.000004, 3: 0.000004, 2: 0.006383, 6: 0.000004, 14: 0.006380, 15: 0.000004, 20: 0.000004, 19: 0.000004, 24: 0.006390, 28: 0.000004): 0.000004, 26: 0.000004, 4: 0.032588, 23: 0.006355): 0.000004): 0.012812, (30: 0.000004, 5: 0.000004): 0.006386, 8: 0.000004): 0.007176, ((27: 0.000004, 29: 0.000004): 0.007044, 10: 0.031847): 0.012949): 0.011641, 18: 0.136120): 0.013701, 7: 0.000004, 9: 0.012938): 0.006392);
(C321: 0.000004, C355: 0.000004, C327: 0.000004, C388: 0.000004, ((((C66: 0.012843, (C263: 0.000004, ((C548: 0.000004, C232: 0.000004, C551: 0.000004, C563: 0.000004, C370: 0.006383, C223: 0.000004, C431: 0.006380, C587: 0.000004, C461: 0.000004, C599: 0.000004, C473: 0.006390, C29: 0.000004): 0.000004, C311: 0.000004, C218: 0.032588, C130: 0.006355): 0.000004): 0.012812, (C149: 0.000004, C112: 0.000004): 0.006386, C316: 0.000004): 0.007176, ((C78: 0.000004, C136: 0.000004): 0.007044, C185: 0.031847): 0.012949): 0.011641, C72: 0.136120): 0.013701, C24: 0.000004, C239: 0.012938): 0.006392);
Detailed output identifying parameters
kappa (ts/tv) = 2.18813
MLEs of dN/dS (w) for site classes (K=3)
p: 0.94518 0.00000 0.05482
w: 0.05386 1.00000 2.70154
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
31..13 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
31..16 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
31..25 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
31..32 0.006 394.9 109.1 0.1990 0.0011 0.0057 0.4 0.6
32..33 0.014 394.9 109.1 0.1990 0.0024 0.0123 1.0 1.3
33..34 0.012 394.9 109.1 0.1990 0.0021 0.0104 0.8 1.1
34..35 0.007 394.9 109.1 0.1990 0.0013 0.0064 0.5 0.7
35..11 0.013 394.9 109.1 0.1990 0.0023 0.0115 0.9 1.3
35..36 0.013 394.9 109.1 0.1990 0.0023 0.0115 0.9 1.3
36..17 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
36..37 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
37..38 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..22 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..21 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..1 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..3 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..2 0.006 394.9 109.1 0.1990 0.0011 0.0057 0.4 0.6
38..6 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..14 0.006 394.9 109.1 0.1990 0.0011 0.0057 0.4 0.6
38..15 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..20 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..19 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..24 0.006 394.9 109.1 0.1990 0.0011 0.0057 0.4 0.6
38..28 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
37..26 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
37..4 0.033 394.9 109.1 0.1990 0.0058 0.0292 2.3 3.2
37..23 0.006 394.9 109.1 0.1990 0.0011 0.0057 0.4 0.6
35..39 0.006 394.9 109.1 0.1990 0.0011 0.0057 0.4 0.6
39..30 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
39..5 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
35..8 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
34..40 0.013 394.9 109.1 0.1990 0.0023 0.0116 0.9 1.3
40..41 0.007 394.9 109.1 0.1990 0.0013 0.0063 0.5 0.7
41..27 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
41..29 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
40..10 0.032 394.9 109.1 0.1990 0.0057 0.0285 2.2 3.1
33..18 0.136 394.9 109.1 0.1990 0.0242 0.1218 9.6 13.3
32..7 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
32..9 0.013 394.9 109.1 0.1990 0.0023 0.0116 0.9 1.3
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C551)
Pr(w>1) post mean +- SE for w
23 P 0.966* 2.610
160 L 0.852 2.311
163 D 0.997** 2.694
164 A 0.994** 2.687
165 I 0.949 2.566
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C551)
Pr(w>1) post mean +- SE for w
23 P 0.584 2.675 +- 2.029
160 L 0.593 2.770 +- 2.314
163 D 0.852 3.819 +- 2.218
164 A 0.864 3.899 +- 2.238
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 0.972 0.028 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.125 0.200 0.212 0.168 0.114 0.073 0.046 0.030 0.019 0.013
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.173
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.018 0.150 0.649
sum of density on p0-p1 = 1.000000
Time used: 7:18
Model 7: beta (10 categories)
TREE # 1: (12, 13, 16, 25, ((((11, (17, ((22, 21, 1, 3, 2, 6, 14, 15, 20, 19, 24, 28), 26, 4, 23)), (30, 5), 8), ((27, 29), 10)), 18), 7, 9)); MP score: 41
check convergence..
lnL(ntime: 40 np: 43): -948.761275 +0.000000
31..12 31..13 31..16 31..25 31..32 32..33 33..34 34..35 35..11 35..36 36..17 36..37 37..38 38..22 38..21 38..1 38..3 38..2 38..6 38..14 38..15 38..20 38..19 38..24 38..28 37..26 37..4 37..23 35..39 39..30 39..5 35..8 34..40 40..41 41..27 41..29 40..10 33..18 32..7 32..9
0.000004 0.000004 0.000004 0.000004 0.006281 0.013409 0.011377 0.007078 0.012635 0.012493 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.006256 0.000004 0.006283 0.000004 0.000004 0.000004 0.006265 0.000004 0.000004 0.031563 0.006211 0.006255 0.000004 0.000004 0.000004 0.012648 0.006958 0.000004 0.000004 0.031092 0.127509 0.000004 0.012686 1.906380 0.005806 0.033504
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.317092
(12: 0.000004, 13: 0.000004, 16: 0.000004, 25: 0.000004, ((((11: 0.012635, (17: 0.000004, ((22: 0.000004, 21: 0.000004, 1: 0.000004, 3: 0.000004, 2: 0.006256, 6: 0.000004, 14: 0.006283, 15: 0.000004, 20: 0.000004, 19: 0.000004, 24: 0.006265, 28: 0.000004): 0.000004, 26: 0.000004, 4: 0.031563, 23: 0.006211): 0.000004): 0.012493, (30: 0.000004, 5: 0.000004): 0.006255, 8: 0.000004): 0.007078, ((27: 0.000004, 29: 0.000004): 0.006958, 10: 0.031092): 0.012648): 0.011377, 18: 0.127509): 0.013409, 7: 0.000004, 9: 0.012686): 0.006281);
(C321: 0.000004, C355: 0.000004, C327: 0.000004, C388: 0.000004, ((((C66: 0.012635, (C263: 0.000004, ((C548: 0.000004, C232: 0.000004, C551: 0.000004, C563: 0.000004, C370: 0.006256, C223: 0.000004, C431: 0.006283, C587: 0.000004, C461: 0.000004, C599: 0.000004, C473: 0.006265, C29: 0.000004): 0.000004, C311: 0.000004, C218: 0.031563, C130: 0.006211): 0.000004): 0.012493, (C149: 0.000004, C112: 0.000004): 0.006255, C316: 0.000004): 0.007078, ((C78: 0.000004, C136: 0.000004): 0.006958, C185: 0.031092): 0.012648): 0.011377, C72: 0.127509): 0.013409, C24: 0.000004, C239: 0.012686): 0.006281);
Detailed output identifying parameters
kappa (ts/tv) = 1.90638
Parameters in M7 (beta):
p = 0.00581 q = 0.03350
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.37754 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
31..13 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
31..16 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
31..25 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
31..32 0.006 397.9 106.1 0.1378 0.0009 0.0066 0.4 0.7
32..33 0.013 397.9 106.1 0.1378 0.0019 0.0140 0.8 1.5
33..34 0.011 397.9 106.1 0.1378 0.0016 0.0119 0.7 1.3
34..35 0.007 397.9 106.1 0.1378 0.0010 0.0074 0.4 0.8
35..11 0.013 397.9 106.1 0.1378 0.0018 0.0132 0.7 1.4
35..36 0.012 397.9 106.1 0.1378 0.0018 0.0130 0.7 1.4
36..17 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
36..37 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
37..38 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
38..22 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
38..21 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
38..1 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
38..3 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
38..2 0.006 397.9 106.1 0.1378 0.0009 0.0065 0.4 0.7
38..6 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
38..14 0.006 397.9 106.1 0.1378 0.0009 0.0066 0.4 0.7
38..15 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
38..20 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
38..19 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
38..24 0.006 397.9 106.1 0.1378 0.0009 0.0065 0.4 0.7
38..28 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
37..26 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
37..4 0.032 397.9 106.1 0.1378 0.0045 0.0330 1.8 3.5
37..23 0.006 397.9 106.1 0.1378 0.0009 0.0065 0.4 0.7
35..39 0.006 397.9 106.1 0.1378 0.0009 0.0065 0.4 0.7
39..30 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
39..5 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
35..8 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
34..40 0.013 397.9 106.1 0.1378 0.0018 0.0132 0.7 1.4
40..41 0.007 397.9 106.1 0.1378 0.0010 0.0073 0.4 0.8
41..27 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
41..29 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
40..10 0.031 397.9 106.1 0.1378 0.0045 0.0325 1.8 3.4
33..18 0.128 397.9 106.1 0.1378 0.0183 0.1331 7.3 14.1
32..7 0.000 397.9 106.1 0.1378 0.0000 0.0000 0.0 0.0
32..9 0.013 397.9 106.1 0.1378 0.0018 0.0132 0.7 1.4
Time used: 17:57
Model 8: beta&w>1 (11 categories)
TREE # 1: (12, 13, 16, 25, ((((11, (17, ((22, 21, 1, 3, 2, 6, 14, 15, 20, 19, 24, 28), 26, 4, 23)), (30, 5), 8), ((27, 29), 10)), 18), 7, 9)); MP score: 41
lnL(ntime: 40 np: 45): -947.792311 +0.000000
31..12 31..13 31..16 31..25 31..32 32..33 33..34 34..35 35..11 35..36 36..17 36..37 37..38 38..22 38..21 38..1 38..3 38..2 38..6 38..14 38..15 38..20 38..19 38..24 38..28 37..26 37..4 37..23 35..39 39..30 39..5 35..8 34..40 40..41 41..27 41..29 40..10 33..18 32..7 32..9
0.000004 0.000004 0.000004 0.000004 0.006393 0.013702 0.011642 0.007177 0.012844 0.012813 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.006383 0.000004 0.006381 0.000004 0.000004 0.000004 0.006391 0.000004 0.000004 0.032591 0.006355 0.006387 0.000004 0.000004 0.000004 0.012950 0.007044 0.000004 0.000004 0.031850 0.136122 0.000004 0.012939 2.188160 0.945569 5.732989 99.000000 2.711203
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.330054
(12: 0.000004, 13: 0.000004, 16: 0.000004, 25: 0.000004, ((((11: 0.012844, (17: 0.000004, ((22: 0.000004, 21: 0.000004, 1: 0.000004, 3: 0.000004, 2: 0.006383, 6: 0.000004, 14: 0.006381, 15: 0.000004, 20: 0.000004, 19: 0.000004, 24: 0.006391, 28: 0.000004): 0.000004, 26: 0.000004, 4: 0.032591, 23: 0.006355): 0.000004): 0.012813, (30: 0.000004, 5: 0.000004): 0.006387, 8: 0.000004): 0.007177, ((27: 0.000004, 29: 0.000004): 0.007044, 10: 0.031850): 0.012950): 0.011642, 18: 0.136122): 0.013702, 7: 0.000004, 9: 0.012939): 0.006393);
(C321: 0.000004, C355: 0.000004, C327: 0.000004, C388: 0.000004, ((((C66: 0.012844, (C263: 0.000004, ((C548: 0.000004, C232: 0.000004, C551: 0.000004, C563: 0.000004, C370: 0.006383, C223: 0.000004, C431: 0.006381, C587: 0.000004, C461: 0.000004, C599: 0.000004, C473: 0.006391, C29: 0.000004): 0.000004, C311: 0.000004, C218: 0.032591, C130: 0.006355): 0.000004): 0.012813, (C149: 0.000004, C112: 0.000004): 0.006387, C316: 0.000004): 0.007177, ((C78: 0.000004, C136: 0.000004): 0.007044, C185: 0.031850): 0.012950): 0.011642, C72: 0.136122): 0.013702, C24: 0.000004, C239: 0.012939): 0.006393);
Detailed output identifying parameters
kappa (ts/tv) = 2.18816
Parameters in M8 (beta&w>1):
p0 = 0.94557 p = 5.73299 q = 99.00000
(p1 = 0.05443) w = 2.71120
MLEs of dN/dS (w) for site classes (K=11)
p: 0.09456 0.09456 0.09456 0.09456 0.09456 0.09456 0.09456 0.09456 0.09456 0.09456 0.05443
w: 0.02377 0.03250 0.03861 0.04401 0.04925 0.05468 0.06068 0.06782 0.07745 0.09534 2.71120
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
31..13 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
31..16 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
31..25 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
31..32 0.006 394.9 109.1 0.1990 0.0011 0.0057 0.4 0.6
32..33 0.014 394.9 109.1 0.1990 0.0024 0.0123 1.0 1.3
33..34 0.012 394.9 109.1 0.1990 0.0021 0.0104 0.8 1.1
34..35 0.007 394.9 109.1 0.1990 0.0013 0.0064 0.5 0.7
35..11 0.013 394.9 109.1 0.1990 0.0023 0.0115 0.9 1.3
35..36 0.013 394.9 109.1 0.1990 0.0023 0.0115 0.9 1.3
36..17 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
36..37 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
37..38 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..22 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..21 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..1 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..3 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..2 0.006 394.9 109.1 0.1990 0.0011 0.0057 0.4 0.6
38..6 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..14 0.006 394.9 109.1 0.1990 0.0011 0.0057 0.4 0.6
38..15 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..20 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..19 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
38..24 0.006 394.9 109.1 0.1990 0.0011 0.0057 0.4 0.6
38..28 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
37..26 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
37..4 0.033 394.9 109.1 0.1990 0.0058 0.0292 2.3 3.2
37..23 0.006 394.9 109.1 0.1990 0.0011 0.0057 0.4 0.6
35..39 0.006 394.9 109.1 0.1990 0.0011 0.0057 0.4 0.6
39..30 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
39..5 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
35..8 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
34..40 0.013 394.9 109.1 0.1990 0.0023 0.0116 0.9 1.3
40..41 0.007 394.9 109.1 0.1990 0.0013 0.0063 0.5 0.7
41..27 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
41..29 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
40..10 0.032 394.9 109.1 0.1990 0.0057 0.0285 2.2 3.1
33..18 0.136 394.9 109.1 0.1990 0.0242 0.1218 9.6 13.3
32..7 0.000 394.9 109.1 0.1990 0.0000 0.0000 0.0 0.0
32..9 0.013 394.9 109.1 0.1990 0.0023 0.0116 0.9 1.3
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C551)
Pr(w>1) post mean +- SE for w
23 P 0.960* 2.606
160 L 0.849 2.311
163 D 0.996** 2.702
164 A 0.993** 2.694
165 I 0.941 2.556
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C551)
Pr(w>1) post mean +- SE for w
23 P 0.715 2.801 +- 1.971
160 L 0.678 2.752 +- 2.155
163 D 0.933 3.646 +- 1.873
164 A 0.929 3.649 +- 1.892
165 I 0.617 2.389 +- 1.881
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.990
p : 0.943 0.055 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.009 0.039 0.078 0.116 0.149 0.178 0.203 0.227
ws: 0.121 0.255 0.248 0.168 0.097 0.053 0.029 0.016 0.009 0.005
Time used: 36:30
Model 1: NearlyNeutral -948.458426 Model 2: PositiveSelection -947.791991 Model 7: beta -948.761275 Model 8: beta&w>1 -947.792311 Model 2 vs 1 1.332870 Model 8 vs 7 1.937928
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
