--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Wed Nov 16 10:04:09 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/236/ect-PB/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/236/ect-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/236/ect-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/236/ect-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -6113.33 -6128.23
2 -6113.19 -6126.78
--------------------------------------
TOTAL -6113.25 -6127.75
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/236/ect-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/236/ect-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/236/ect-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.868605 0.003478 0.758633 0.986718 0.866568 1279.60 1363.97 1.000
r(A<->C){all} 0.093684 0.000190 0.065411 0.119265 0.093050 1144.13 1239.68 1.000
r(A<->G){all} 0.207550 0.000498 0.164403 0.250435 0.207202 1006.46 1063.05 1.000
r(A<->T){all} 0.085388 0.000320 0.049728 0.119309 0.084489 1068.81 1076.28 1.000
r(C<->G){all} 0.065409 0.000099 0.047226 0.086132 0.065055 854.50 1013.18 1.000
r(C<->T){all} 0.423005 0.000798 0.368976 0.479710 0.422489 1044.37 1061.28 1.000
r(G<->T){all} 0.124963 0.000258 0.095605 0.158015 0.124651 1000.58 1034.35 1.002
pi(A){all} 0.234891 0.000091 0.215884 0.253249 0.234612 1098.56 1250.62 1.000
pi(C){all} 0.285056 0.000096 0.266639 0.304866 0.284902 1053.54 1092.50 1.001
pi(G){all} 0.314295 0.000106 0.292507 0.332783 0.314505 955.62 976.53 1.001
pi(T){all} 0.165758 0.000065 0.149839 0.181356 0.165568 1126.63 1162.92 1.000
alpha{1,2} 0.185801 0.000388 0.150104 0.225457 0.183801 1147.77 1324.38 1.000
alpha{3} 3.477114 0.807280 1.875706 5.214329 3.356714 1375.67 1382.74 1.000
pinvar{all} 0.441182 0.000972 0.382010 0.502332 0.442157 1354.39 1427.69 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -5416.111009
Model 2: PositiveSelection -5416.111009
Model 0: one-ratio -5545.578044
Model 3: discrete -5407.896979
Model 7: beta -5412.102139
Model 8: beta&w>1 -5409.069917
Model 0 vs 1 258.93406999999934
Model 2 vs 1 0.0
Model 8 vs 7 6.064443999999639
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_ect-PB)
Pr(w>1) post mean +- SE for w
186 V 0.679 1.591
293 S 0.951* 2.013
296 P 0.564 1.409
362 P 0.734 1.677
365 E 0.839 1.840
366 S 0.752 1.705
367 E 0.839 1.839
383 S 0.893 1.923
386 G 0.765 1.725
418 S 0.760 1.717
419 G 0.977* 2.054
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_ect-PB)
Pr(w>1) post mean +- SE for w
147 V 0.526 1.027 +- 0.548
186 V 0.883 1.428 +- 0.335
204 N 0.755 1.295 +- 0.446
293 S 0.965* 1.503 +- 0.235
296 P 0.810 1.347 +- 0.427
312 S 0.761 1.301 +- 0.437
331 V 0.608 1.138 +- 0.496
332 N 0.533 1.036 +- 0.542
333 S 0.682 1.206 +- 0.501
362 P 0.892 1.434 +- 0.334
363 A 0.537 1.041 +- 0.543
365 E 0.928 1.471 +- 0.286
366 S 0.899 1.441 +- 0.326
367 E 0.924 1.465 +- 0.297
383 S 0.940 1.480 +- 0.276
386 G 0.912 1.455 +- 0.304
418 S 0.903 1.445 +- 0.320
419 G 0.978* 1.514 +- 0.213
>C1
MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQTVNNEVAPAVAPAS
DDDDDDDDEDDDDEPDLGDLIDDDDDDDEEEDDDEDEEDDTPQGQAAPAA
TASDDDEEEDDDDDDYLDRLFDDILGDDEDEDDDDETPAATAQQSAVAAA
PAQTLDEVAPAAASSVSAGISDGVDLPAESGNAAEVLAAGNAADESVSAA
VAPAQNAAASSSNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREARD
LKNNVIDMSTDAFQARHNHFIDAIFSRINRIVSENYDPYVVNLTGRSVLP
NAASGSNVKAANKKQSTSSKVGGHKKLKNTRSEPRSVNSNQEAREAAVKL
QEQLTQLQSELAIKAVEKRPSPTSPATESESDSGSPKAETRTVSGSKTGQ
KKSSNKQNTKKASGLKSGNYNQPAGASKAGASSAGAVEKLQKAEGRLSGL
ASLKRVGNVKVISDAEGRNSTIKAKFTLGPLVLRVEKSFKKGSVRSVKSA
TARTNEMMGRIKFSVLDDRATLMSIKVQQPKQVEVESKDNHDRTREFVWR
RTPKIAKLVNEKLKLAAESLFAPQGVEVVRLoooooooooo
>C2
MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQTVNNEVAPAVAPAS
DDDDDDDDEDDDDEPDLGDLIDDDDDDDEEEDDDEDEEDDTPQGQAAPAA
TASDNDEEEDDDDDDYLDRLFDDILGDDDDEDDDDEAPAATAQQSAAAAA
PAQTLDEVAPAAASSVSAGISDGVDLPAESGNAAELLAAGNAADESVSAA
VAPAQNAAASSSNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREARD
LKNNVIDMSTDAFQARHNHFIDAIFSRINRIVSENYDPYVVNLTGRSALP
NAASGSAVKGTNKKQSTSSKVGGHKKLKNTRSEPRSANPNQEAREAAVKL
QEQLTQLQSELGIKAVEKRPRGPATSPASPATESESDSGSPKAETRTVSG
AKTGQKKSSNKQNTNKASSLKSGNYNQPAGASKAGAAGGGAVEKLQKAEG
RLSGLASLKRVGNVKVISDAEGRNSTIKAKFTLGPLVLRVEKSFKKGSVR
SVKSATARTNEMMGRIKFSVLDDRATLMSIKVQQPKQVEVESKDNHDRTR
EFVWRRTPKIAKLVNEKLKLAAESLFAPQGVEVVRLooooo
>C3
MKFVILLCVLSALLLQIEASPLKQLSRSERAVSRQQTVNNEVAPAVAPAS
EDDDDDDDEDDDDEPDLGDLIDDDEDDDEEEDDDDDEEDDTPQGQAAPAA
TASDDDEEEDDDDDDYLDRLFDDILGDDDDEDDDDEVAPAATAQQSAVAA
APAQTLDEVAPAAASSVSAGISDGVDLPAESGNAADVVAAGNAADESVSA
AVAPAQAAAASNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREARDL
KNNVIDMSTDAFQARHNHFIDAIFSRINRIVSDNYDPYVVNLTGRWASPN
AASGSTVKAANKKQTTTSKVGGHKKLKNTRSEPRSGHSNQEAREAAVKLQ
EQLTQLQSELAIKAVEKRPSEALTSDPAAPAASQSDAESPKAETRTVSGP
KTSQKNKSSNKQNTKKASGVKSGNYNQPAGASKAGASSGAAVEKLQKAEG
RLSGLASLKRVGNVKVISDAEGRNSTIKAKFTLGPLVLRVEKSFKKGSVR
SVKSATARTNEMIGRIKFSVLDDRATLMSIKVQQPKQVEVESKDNHDRTR
EFVWRRTPKIAKLVNEKLKLAAESLFAPQGVEVVRLooooo
>C4
MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQAVNNEVAPAVAPAS
EDDDDDDDEDDDDEPDLGDLIDDDEDDDEEEDDDDDEEDDTPQGQAAPAA
TASDDDEEEDDDDDDYLDRLFDDILGDDDDEDDDDEVAPAAAAQQSPVAA
APAQTLDEVAPAAASSVGAGISDGVDLPAESGNAADAVAAGNAADESVSA
AVAPAQSAAASNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREARDL
KNNVIDMSTDAFQARHNHFIDAIFSRINRIVSDNYDPYVVNLTGRTAAPN
AAGSTVKAANKKQSTTSKVGGHKKLKNTRSEPRSVSGNQAAREAAVKLQE
QLTQLQSELAIKAVEKRAGEAATSDPAAPAADASDSESPKAETRTVSSPK
TGQKKSSNKANTKKAAGLKSGNYNQPAGSSKAGASGSGVQVEKLQKAEGR
LSGLASLKRVGNVKVISDAEGRNSTIKAKFTLGPLVLRVEKSFKKGSVRS
VKSATARTNEMMGRIKFSVHDDRATLMSIKVQQPKQVEVESKDNHDRTRE
FVWRRTPKIAKLVNEKLKLAAESLFAPQGVEVVRLoooooo
>C5
MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQAVNNEVAPAVAPAS
EDDDDDDDEDDDDEPDLGDLIDDDEDDDEEEDDDDDEEDDTPQGQAAPAA
AASDDDEEEDDDDDDYLDRLFDDILGDDDDEDDDDEVAPAATAQQSAVAA
APAQTLDEVAPAAASSVGAGISDGVDLPAESGNAADAVAAGNAADESVSA
AVAPAQAAAASNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREARDL
KNNVIDMSTDAFQARHNHFIDAIFSRINRIVSDNYDPYVVNLTGRTAATN
AAGGSTVKAANKKQSTNSKVGGHKKLKNTRSEPRSGNANQAAREAAVKLQ
EQLTQLQSELGIKAVEKRPTPASPASDSESPKAETRTVSSPKTGQKKSSN
KANTKKAAGLKSGNYNQPAGASKAGASGSGVQVEKLQKAEGRLSGLASLK
RVGNVKVISDAEGRNSTIKAKFTLGPLVLRVEKSFKKGSVRSVKSATART
NEMMGRIKFSVLDDRATLMSIKVQQPKQVEVESKDNHDRTREFVWRRTPK
IAKLVNEKLKLAAESLFAPQGVEVVRLoooooooooooooo
>C6
MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQAVNNEVAPAVAPAS
DDDEDDDDEDDDDEPDLGDLIDDDDDDDEEEDDDEDEEDDTPQGQAAPAA
TASDDDEEEDDDDDDYLDRLFDDILGDDDDEDDDDEAAPAASVQQSSVAA
APAQTLDEVAPAAASSVSSGISDGVDLPAESGNAAEAVAAGNSADESVSA
AVAPAQAAAASNNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREARD
LKNNVIDMSTDAFQARHNHFIDAIFSRINRIVSDNYDPYVVNLTGRWASP
NAASGSTVKAANKKQTTTSKVGGHKKLKNTRSEPRSVNSNHEAREAAVKL
QEQLTQLQSELAIKAVEKRPSDPASPASHPDSDSESPKAETRTVSGPKTS
QKKSSNKQNTKKASGLKSGNYNQPAGASKAGATPSGAVEKLQKAEGRLSG
LASLKRVGNVKVISDAEGRNSTIKAKFTLGPLVLRVEKSFKKGSVRSVKS
ATARTNEMIGRIKFSVLDDRATLMSIKVQQPKQVEVESKDNHDRTREFVW
RRTPKIAKLVNEKLKLAAESLFAPQGVEVVRLooooooooo
>C7
MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQAVNNEVAPAVAPAS
DDDEDDDDEDDDDEPDLGDLIDDDDDDDEEEDDDDDEEDDTPQGQAAPAA
TASDDDEEEDDDDDDYLDRLFDDILGDDDDEDDDDEVAPAASAPQNAAAA
APAQTLDEVAPAAASSVSAGISDGVDLPAESGNVAEPVAAGNAADESVSA
AVAPAAAASNSEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREARDLKN
NVIDMSTDAFQARHNHFIDAIFSRINRIVADNYDPYVVNLTGRLASGPAS
GSTVKAATKKQSTNSKVGGHKKLKNTRSEPRSGHSNQEAAVKLQEQLTQL
QSELAIKAVEKRPVESTSDPVSPPAASASDSESPKAETRTVSGQKSQKKS
SNKQNTKKAAGLKSGNYNQPAGGSSKAGQSGVAVEKLQKAEGRLSGLASL
KRVGNVKVISDAEGRNSTIKAKFTLGPLILRVEKSFKKGSVRSVKSATAR
TNEMMGRIKFSVLDDRATLMSIKVQQPKQVEVESKDNHDRTREFVWRRTP
KIAKLVNEKLKLAAESLFAPQGVEVVRLooooooooooooo
>C8
MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQAVNNEVAPAVAPAS
DDDDDDDDEDDDDEPDLGDLIDDDDDDDEEEDDDDDEEDDTPQGQAAPAA
TASDDDEEEDDDDDDYLDRLFDDILGDDEDEDDDDEVAPAASAPQSAAAA
APAQTLDEVAPAAASSVSAGISDGVDLPAESGNAADPVAAGNAADESVSA
AVAPAQSAAASNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREARDL
KNNVIDMSTDAFQARHNHFIDAIFSRINRIVSDNYDPYVVNLTGRLASPN
TASGSTVKAANKKQSTSSKVGGHKKLKNTRSEPRSGNSNKEAREAAVKLQ
EQLTQLQSELAIKAVEKRPTESQSDPAPSASESDSPKAETRTVSGPKASQ
KKSSNGTQGHKQNTKKASGLKSGNYNQPAGASKAGATGGNAVEKLQKAEG
RLSGLASLKRVGNVKVISDAEGRNSTIKAKFTLGPLILRVEKSFKKGSVR
SVKSATARTNEMVGRIKFSVLDDRATLMSIKVQQPKQVEVESKDNHDRTR
EFVWRRTPKIAKLVNEKLKLAAESLFAPQGVEVVRLooooo
>C9
MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQAVNNEVAPAVAPAS
DDDEDDDDEDDDDEPDLGDLIDDDDDDDEEEDDDDDEEDDTPQGQAAPAA
TASDDDEEEDDDDDDYLDRLFDDILGDDEDEDDDDEVAPAASAQQSAVAA
APAQTLDEVAPAAASSVSAGISDGVDLPAESGNAAEAVAAGNAADESVSA
NVAPAQSAAASNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREARDL
KNNVIDMSTDAFQARHNHFIDAIFSRINRIVSDNYDPYVVNLTGRWASPN
AASGSTVKAANKKHSTTSKVGGHKKLKNTRSEPRAGNSNQNQNQNQEARE
AAVKLQEQLTQLQSELAIKAVEKRPSEPQSDHAPSAAASESPKAETRTVS
GTKTSQKKSSSNGTQGHKQNAKKASGLKSGNYNQPAGASKAGASAAVEKL
QKAEGRLSGLASLKRVGNVKVISDAEGRNSTIKAKFTLGPLILRVEKSFK
KGSVRSVKSATARTNEMVGRIKFSVLDDRATLMSIKVQQPKQVEVESKDN
HDRTREFVWRRTPKIAKLVNEKLKLAAESLFAPQGVEVVRL
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=99, Nseq=9, Len=616
C1 MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQTVNNEVAPAVAPAS
C2 MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQTVNNEVAPAVAPAS
C3 MKFVILLCVLSALLLQIEASPLKQLSRSERAVSRQQTVNNEVAPAVAPAS
C4 MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQAVNNEVAPAVAPAS
C5 MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQAVNNEVAPAVAPAS
C6 MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQAVNNEVAPAVAPAS
C7 MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQAVNNEVAPAVAPAS
C8 MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQAVNNEVAPAVAPAS
C9 MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQAVNNEVAPAVAPAS
**********************::************:*************
C1 DDDDDDDDEDDDDEPDLGDLIDDDDDDDEEEDDDEDEEDDTPQGQAAPAA
C2 DDDDDDDDEDDDDEPDLGDLIDDDDDDDEEEDDDEDEEDDTPQGQAAPAA
C3 EDDDDDDDEDDDDEPDLGDLIDDDEDDDEEEDDDDDEEDDTPQGQAAPAA
C4 EDDDDDDDEDDDDEPDLGDLIDDDEDDDEEEDDDDDEEDDTPQGQAAPAA
C5 EDDDDDDDEDDDDEPDLGDLIDDDEDDDEEEDDDDDEEDDTPQGQAAPAA
C6 DDDEDDDDEDDDDEPDLGDLIDDDDDDDEEEDDDEDEEDDTPQGQAAPAA
C7 DDDEDDDDEDDDDEPDLGDLIDDDDDDDEEEDDDDDEEDDTPQGQAAPAA
C8 DDDDDDDDEDDDDEPDLGDLIDDDDDDDEEEDDDDDEEDDTPQGQAAPAA
C9 DDDEDDDDEDDDDEPDLGDLIDDDDDDDEEEDDDDDEEDDTPQGQAAPAA
:**:********************:*********:***************
C1 TASDDDEEEDDDDDDYLDRLFDDILGDDEDEDDDDE-TPAATAQQSAVAA
C2 TASDNDEEEDDDDDDYLDRLFDDILGDDDDEDDDDE-APAATAQQSAAAA
C3 TASDDDEEEDDDDDDYLDRLFDDILGDDDDEDDDDEVAPAATAQQSAVAA
C4 TASDDDEEEDDDDDDYLDRLFDDILGDDDDEDDDDEVAPAAAAQQSPVAA
C5 AASDDDEEEDDDDDDYLDRLFDDILGDDDDEDDDDEVAPAATAQQSAVAA
C6 TASDDDEEEDDDDDDYLDRLFDDILGDDDDEDDDDEAAPAASVQQSSVAA
C7 TASDDDEEEDDDDDDYLDRLFDDILGDDDDEDDDDEVAPAASAPQNAAAA
C8 TASDDDEEEDDDDDDYLDRLFDDILGDDEDEDDDDEVAPAASAPQSAAAA
C9 TASDDDEEEDDDDDDYLDRLFDDILGDDEDEDDDDEVAPAASAQQSAVAA
:***:***********************:******* :***:. *...**
C1 APAQTLDEVAPAAASSVSAGISDGVDLPAESGNAAEVLAAGNAADESVSA
C2 APAQTLDEVAPAAASSVSAGISDGVDLPAESGNAAELLAAGNAADESVSA
C3 APAQTLDEVAPAAASSVSAGISDGVDLPAESGNAADVVAAGNAADESVSA
C4 APAQTLDEVAPAAASSVGAGISDGVDLPAESGNAADAVAAGNAADESVSA
C5 APAQTLDEVAPAAASSVGAGISDGVDLPAESGNAADAVAAGNAADESVSA
C6 APAQTLDEVAPAAASSVSSGISDGVDLPAESGNAAEAVAAGNSADESVSA
C7 APAQTLDEVAPAAASSVSAGISDGVDLPAESGNVAEPVAAGNAADESVSA
C8 APAQTLDEVAPAAASSVSAGISDGVDLPAESGNAADPVAAGNAADESVSA
C9 APAQTLDEVAPAAASSVSAGISDGVDLPAESGNAAEAVAAGNAADESVSA
*****************.:**************.*: :****:*******
C1 AVAPAQNAAASSSNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREAR
C2 AVAPAQNAAASSSNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREAR
C3 AVAPAQAAAASN--NEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREAR
C4 AVAPAQSAAASN--NEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREAR
C5 AVAPAQAAAASN--NEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREAR
C6 AVAPAQAAAASN-NNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREAR
C7 AVAP--AAAASN--SEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREAR
C8 AVAPAQSAAASN--NEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREAR
C9 NVAPAQSAAASN--NEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREAR
*** ****. .***********************************
C1 DLKNNVIDMSTDAFQARHNHFIDAIFSRINRIVSENYDPYVVNLTGRSVL
C2 DLKNNVIDMSTDAFQARHNHFIDAIFSRINRIVSENYDPYVVNLTGRSAL
C3 DLKNNVIDMSTDAFQARHNHFIDAIFSRINRIVSDNYDPYVVNLTGRWAS
C4 DLKNNVIDMSTDAFQARHNHFIDAIFSRINRIVSDNYDPYVVNLTGRTAA
C5 DLKNNVIDMSTDAFQARHNHFIDAIFSRINRIVSDNYDPYVVNLTGRTAA
C6 DLKNNVIDMSTDAFQARHNHFIDAIFSRINRIVSDNYDPYVVNLTGRWAS
C7 DLKNNVIDMSTDAFQARHNHFIDAIFSRINRIVADNYDPYVVNLTGRLAS
C8 DLKNNVIDMSTDAFQARHNHFIDAIFSRINRIVSDNYDPYVVNLTGRLAS
C9 DLKNNVIDMSTDAFQARHNHFIDAIFSRINRIVSDNYDPYVVNLTGRWAS
*********************************::************ .
C1 PNAASGSNVKAANKKQSTSSKVGGHKKLKNTRSEPRSVNSNQ------EA
C2 PNAASGSAVKGTNKKQSTSSKVGGHKKLKNTRSEPRSANPNQ------EA
C3 PNAASGSTVKAANKKQTTTSKVGGHKKLKNTRSEPRSGHSNQ------EA
C4 PNAAG-STVKAANKKQSTTSKVGGHKKLKNTRSEPRSVSGNQ------AA
C5 TNAAGGSTVKAANKKQSTNSKVGGHKKLKNTRSEPRSGNANQ------AA
C6 PNAASGSTVKAANKKQTTTSKVGGHKKLKNTRSEPRSVNSNH------EA
C7 G-PASGSTVKAATKKQSTNSKVGGHKKLKNTRSEPRSGHSNQ--------
C8 PNTASGSTVKAANKKQSTSSKVGGHKKLKNTRSEPRSGNSNK------EA
C9 PNAASGSTVKAANKKHSTTSKVGGHKKLKNTRSEPRAGNSNQNQNQNQEA
.*. * **.:.**::*.*****************: *:
C1 REAAVKLQEQLTQLQSELAIKAVEKRP-----SPTSPATESESDSGSPKA
C2 REAAVKLQEQLTQLQSELGIKAVEKRPRGPATSPASPATESESDSGSPKA
C3 REAAVKLQEQLTQLQSELAIKAVEKRPSEALTSDPAAPAASQSDAESPKA
C4 REAAVKLQEQLTQLQSELAIKAVEKRAGEAATSDPAAPAADASDSESPKA
C5 REAAVKLQEQLTQLQSELGIKAVEKRP---------TPASPASDSESPKA
C6 REAAVKLQEQLTQLQSELAIKAVEKRP----SDPASPASHPDSDSESPKA
C7 -EAAVKLQEQLTQLQSELAIKAVEKRPVESTSDPVSPPAASASDSESPKA
C8 REAAVKLQEQLTQLQSELAIKAVEKRP----TESQSDPAPSASESDSPKA
C9 REAAVKLQEQLTQLQSELAIKAVEKRP----SEPQSDHAPSAAASESPKA
*****************.*******. : : : ****
C1 ETRTVSGSKTGQK-KSS------NKQNTKKASGLKSGNYNQPAG-ASKAG
C2 ETRTVSGAKTGQK-KSS------NKQNTNKASSLKSGNYNQPAG-ASKAG
C3 ETRTVSGPKTSQKNKSS------NKQNTKKASGVKSGNYNQPAG-ASKAG
C4 ETRTVSSPKTGQK-KSS------NKANTKKAAGLKSGNYNQPAG-SSKAG
C5 ETRTVSSPKTGQK-KSS------NKANTKKAAGLKSGNYNQPAG-ASKAG
C6 ETRTVSGPKTSQK-KSS------NKQNTKKASGLKSGNYNQPAG-ASKAG
C7 ETRTVSGQKSQKK--SS------NKQNTKKAAGLKSGNYNQPAGGSSKAG
C8 ETRTVSGPKASQK-KSS-NGTQGHKQNTKKASGLKSGNYNQPAG-ASKAG
C9 ETRTVSGTKTSQK-KSSSNGTQGHKQNAKKASGLKSGNYNQPAG-ASKAG
******. *: :* ** :* *::**:.:********** :****
C1 ASS-AGAVEKLQKAEGRLSGLASLKRVGNVKVISDAEGRNSTIKAKFTLG
C2 AAG-GGAVEKLQKAEGRLSGLASLKRVGNVKVISDAEGRNSTIKAKFTLG
C3 ASS-GAAVEKLQKAEGRLSGLASLKRVGNVKVISDAEGRNSTIKAKFTLG
C4 ASGSGVQVEKLQKAEGRLSGLASLKRVGNVKVISDAEGRNSTIKAKFTLG
C5 ASGSGVQVEKLQKAEGRLSGLASLKRVGNVKVISDAEGRNSTIKAKFTLG
C6 ATP-SGAVEKLQKAEGRLSGLASLKRVGNVKVISDAEGRNSTIKAKFTLG
C7 QS--GVAVEKLQKAEGRLSGLASLKRVGNVKVISDAEGRNSTIKAKFTLG
C8 ATG-GNAVEKLQKAEGRLSGLASLKRVGNVKVISDAEGRNSTIKAKFTLG
C9 AS---AAVEKLQKAEGRLSGLASLKRVGNVKVISDAEGRNSTIKAKFTLG
: *******************************************
C1 PLVLRVEKSFKKGSVRSVKSATARTNEMMGRIKFSVLDDRATLMSIKVQQ
C2 PLVLRVEKSFKKGSVRSVKSATARTNEMMGRIKFSVLDDRATLMSIKVQQ
C3 PLVLRVEKSFKKGSVRSVKSATARTNEMIGRIKFSVLDDRATLMSIKVQQ
C4 PLVLRVEKSFKKGSVRSVKSATARTNEMMGRIKFSVHDDRATLMSIKVQQ
C5 PLVLRVEKSFKKGSVRSVKSATARTNEMMGRIKFSVLDDRATLMSIKVQQ
C6 PLVLRVEKSFKKGSVRSVKSATARTNEMIGRIKFSVLDDRATLMSIKVQQ
C7 PLILRVEKSFKKGSVRSVKSATARTNEMMGRIKFSVLDDRATLMSIKVQQ
C8 PLILRVEKSFKKGSVRSVKSATARTNEMVGRIKFSVLDDRATLMSIKVQQ
C9 PLILRVEKSFKKGSVRSVKSATARTNEMVGRIKFSVLDDRATLMSIKVQQ
**:*************************:******* *************
C1 PKQVEVESKDNHDRTREFVWRRTPKIAKLVNEKLKLAAESLFAPQGVEVV
C2 PKQVEVESKDNHDRTREFVWRRTPKIAKLVNEKLKLAAESLFAPQGVEVV
C3 PKQVEVESKDNHDRTREFVWRRTPKIAKLVNEKLKLAAESLFAPQGVEVV
C4 PKQVEVESKDNHDRTREFVWRRTPKIAKLVNEKLKLAAESLFAPQGVEVV
C5 PKQVEVESKDNHDRTREFVWRRTPKIAKLVNEKLKLAAESLFAPQGVEVV
C6 PKQVEVESKDNHDRTREFVWRRTPKIAKLVNEKLKLAAESLFAPQGVEVV
C7 PKQVEVESKDNHDRTREFVWRRTPKIAKLVNEKLKLAAESLFAPQGVEVV
C8 PKQVEVESKDNHDRTREFVWRRTPKIAKLVNEKLKLAAESLFAPQGVEVV
C9 PKQVEVESKDNHDRTREFVWRRTPKIAKLVNEKLKLAAESLFAPQGVEVV
**************************************************
C1 RLoooooooooo----
C2 RLooooo---------
C3 RLooooo---------
C4 RLoooooo--------
C5 RLoooooooooooooo
C6 RLooooooooo-----
C7 RLooooooooooooo-
C8 RLooooo---------
C9 RL--------------
**
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
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-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
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-split D [0] 0
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-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
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-proxy S [0] unset
-email S [0]
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-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [50464]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [50464]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [50464]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [50464]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 591 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 591 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/236/ect-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [50464]
Library Relaxation: Multi_proc [72]
in 