--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Fri Nov 25 18:23:05 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/1/5-HT1B-PA/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -5869.20 -5883.86 2 -5868.64 -5884.87 -------------------------------------- TOTAL -5868.88 -5884.48 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.698389 0.002576 0.605267 0.801714 0.696879 1375.44 1438.22 1.000 r(A<->C){all} 0.120937 0.000289 0.090629 0.156427 0.120415 1013.83 1069.95 1.001 r(A<->G){all} 0.204322 0.000472 0.163859 0.248913 0.203521 769.95 829.06 1.000 r(A<->T){all} 0.115335 0.000428 0.076952 0.157425 0.113920 1071.85 1092.66 1.000 r(C<->G){all} 0.090379 0.000149 0.066840 0.114015 0.089697 1028.96 1106.95 1.000 r(C<->T){all} 0.418041 0.000928 0.358717 0.476712 0.418129 845.32 916.44 1.000 r(G<->T){all} 0.050986 0.000136 0.026899 0.071913 0.050297 908.68 978.62 1.000 pi(A){all} 0.220078 0.000084 0.202436 0.237750 0.220047 1094.70 1105.02 1.000 pi(C){all} 0.278215 0.000091 0.260031 0.297187 0.278058 1011.63 1076.66 1.000 pi(G){all} 0.306679 0.000105 0.287280 0.326855 0.306656 1143.81 1145.85 1.000 pi(T){all} 0.195028 0.000077 0.177907 0.212454 0.194909 919.11 994.02 1.000 alpha{1,2} 0.174656 0.000534 0.129548 0.219481 0.173143 830.49 1038.11 1.000 alpha{3} 2.595419 0.562485 1.284599 4.018486 2.486756 1265.95 1316.22 1.000 pinvar{all} 0.444475 0.001668 0.365685 0.523182 0.447343 730.32 1017.75 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -5171.587149 Model 2: PositiveSelection -5171.070065 Model 0: one-ratio -5271.489567 Model 3: discrete -5169.548705 Model 7: beta -5171.548293 Model 8: beta&w>1 -5169.73333 Model 0 vs 1 199.80483599999934 Model 2 vs 1 1.034168000000136 Model 8 vs 7 3.629925999999614
>C1 MLKTVTTAMAAGDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS NLSQIVWNRSINGNGNSNTFDLVDDEQERAAVEFWLLVKMIAMAVVLGLM ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS AVRELKKERSKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGR NTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAG TELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQS IAMGGVGCLTTTTPSEKALSGAGTVAGAVAGGSGSGSGEEGAGTEGKNAG VGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPF FVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFK RILFGRKAAARARSAKIooooooo >C2 MLKTVTTAMAADDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS NLSQIVWNRSVSGNGNSNTFDLVDDEQQRAAVEFWLLVKMIAMAVVLGLM ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS AVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGR NTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAG TELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQS IAMGGVGCLTTTSPSEKALSGAGTVAGAVAGGSGSGSGEEGAGTEGKNAG VGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPF FVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFK RILFGRKAAARARSAKIooooooo >C3 MLKTVTTAMAAGDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS NLSQIVWNRSENGNGNSNTFDLVDDEQQRAAVEFWLLVKMIAMAVVLGLM ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS AVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGR NTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAG TELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQS IAMGGVGCLTTTSPSEKALSGAGTVGGAVAGGSGSGSGEEGAGTEGKNAG VGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPF FVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFK RILFGRKAAARARSAKIooooooo >C4 MLKTVTTAMMAASDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT NTTNLSQIVWNRSENGNGNSNIFDLVDDEQKRAAVQFWLLVKMIAMAVVL GLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLG AVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDY NNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQD VGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETD CDSAVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRPRKRMRIC FGRNTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKS HAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPL AQSIAMGGVACLTTTSPSEKAVSGAGAGTGTGVGAGAGGSGSGSGEEGPG TEGKSAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAF VICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNP EFRRAFKRILFGRKAAARARSAKI >C5 MLKTVTTAMAAGDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTT NLSQIAWNRSENGNGNSNVFDPVDDEQKRAAVQFWLLVKMIAMAVVLGLM ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS AVRELKKERGKRRAERKRLEAGERTPVDGDGAGGQLQRRPRKRMRICFGR NTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAG TELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQS IAMGGVGCLAATSPSERAVSGAGAGAGAGAGAGTVAVGSGNGSGEEGPGT EGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFV ICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPE FRRAFKRILFGRKAAARARSAKIo >C6 MLKTVTTAMAAADDDDIPASILEIELPAILLNESLFIELNGNLTQLVDTT SNLSQIVWNRTENGNGNGNIFDLDAEQRATVEFWLLVKMIAMAVVLGLMI LVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYE ISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNLR TPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGYQ IFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDST VRELKKERGKRRAERKRLEAGERTPVGGEAADSQLQRRPRKRMRICFGRN TNTANIIAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAGT ELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSI AMGGAGCLTTTSPSEKPGAAGGGGGSGEVGAGTEGSSPGKNAGVGLGGVL ASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTM SLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFGRK AAARARSAKIoooooooooooooo >C7 MLKTVTTAMAAADDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS NLSQIAWNRTANGNGNGNGNSNIFDLDEQQRAAVEFWLLVKMIAMAVVLG LMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGA VYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYN NLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPEYMKRIEEQHCMVSQDV GYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDC DSTVRELKKERGKRRAERKRLEAGERTPGGGEADSQLQRRPRKRMRICFG RNTNTANIVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHA GTELTTVSSDAEDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQ SIAMGGAGCLTTTSPSEKLGAGGGGPGGGAGGEAAGTEGSSPGKNAGVGL GGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVM ALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRIL FGRKAAARARSAKIoooooooooo >C8 MLKTVTTAMAAADDNVPASILEIELPAILLNESLFIELNGNLTQLVDTTS NLSQIVWNRSKLENGNDNNSNIFDLDAEQRAAVEFWLLVKMIAMAVVLGL MILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAV YEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNN LRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVG YQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCD STVREMKKERGKRRAERKRLEAGERTPADGEADSQMQRRPRKRMRICFGR NTNTANIVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAG TELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQS IAMGGAGCLTTTSPSEKPGAGGSGEEVSGTEGTSPGKNAGVGLGGVLASI ANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTMSLC KECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFGRKAAA RARSAKIooooooooooooooooo >C9 MLKTVTTAMAVADDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTT NLSQIVWNRSENGNGNSNIFDLDDEERAAVEFWLLVKMIAMAVVLGLMIL VTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEI SNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNLRT PRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGYQI FATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDSTV REIKKERGKRRADRKRQEAGERTPVSGEADTQVQRRPLKRMRIYFGRNTN TANITAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAGTEL TTVSSDAEDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAM GGAGCLTTTSPPERGGGGGGAGIGGPGGGGETAAAGTEGSSPGKNAGVGL GGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVM ALTMSLCKECEIHAAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRIL FGRKAAARARSAKIoooooooooo >C10 MLKTVTTAMAATDDDVAASILEIELPAILLNESLFIELNGNLTQLLDTTS NLSQIIWNRSENGYGSGNTSTLDMDAEQRAAVEFWLLVKMIAMAVVLGLM ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS TVRELKKERGKRRAERKRQEAGERTPGGGEADAQLQRRPRKRIRICFGRN TNTANIAAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAGT ELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSI AMGGAGCLATTLPSANEGGGGGGGVAGGAGGAGTEGSSPGKSAGVGLGGV LASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALT MSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFGR KAAARARSAKIooooooooooooo CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=99, Nseq=10, Len=649 C1 MLKTVTTAMAAG-DDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT C2 MLKTVTTAMAAD-DDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT C3 MLKTVTTAMAAG-DDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT C4 MLKTVTTAMMAASDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT C5 MLKTVTTAMAAG-DDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT C6 MLKTVTTAMAAADDDDIPASILEIELPAILLNESLFIELNGNLTQLVDTT C7 MLKTVTTAMAAADDD-VPASILEIELPAILLNESLFIELNGNLTQLVDTT C8 MLKTVTTAMAAADDN-VPASILEIELPAILLNESLFIELNGNLTQLVDTT C9 MLKTVTTAMAVADDD-VPASILEIELPAILLNESLFIELNGNLTQLVDTT C10 MLKTVTTAMAATDDD-VAASILEIELPAILLNESLFIELNGNLTQLLDTT ********* . *: :.****************************:*** C1 --SNLSQIVWNRSINGNGNSN----TFDLVDDEQERAAVEFWLLVKMIAM C2 --SNLSQIVWNRSVSGNGNSN----TFDLVDDEQQRAAVEFWLLVKMIAM C3 --SNLSQIVWNRSENGNGNSN----TFDLVDDEQQRAAVEFWLLVKMIAM C4 NTTNLSQIVWNRSENGNGNSN----IFDLVDDEQKRAAVQFWLLVKMIAM C5 --TNLSQIAWNRSENGNGNSN----VFDPVDDEQKRAAVQFWLLVKMIAM C6 --SNLSQIVWNRTENGNGNGN----IFDLDAEQ--RATVEFWLLVKMIAM C7 --SNLSQIAWNRTANGNGNGNGNSNIFDLDEQQ--RAAVEFWLLVKMIAM C8 --SNLSQIVWNRSKLENGNDN-NSNIFDLDAEQ--RAAVEFWLLVKMIAM C9 --TNLSQIVWNRSEN--GNGN--SNIFDLDDEE--RAAVEFWLLVKMIAM C10 --SNLSQIIWNRSENGYGSGN--TSTLDMDAEQ--RAAVEFWLLVKMIAM :***** ***: *..* :* :: **:*:********** C1 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C2 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C3 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C4 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C5 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C6 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C7 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C8 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C9 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C10 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV ************************************************** C1 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C2 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C3 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C4 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C5 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C6 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C7 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C8 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C9 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C10 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT ************************************************** C1 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM C2 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM C3 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM C4 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM C5 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM C6 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM C7 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPEYMKRIEEQHCM C8 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM C9 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM C10 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM **************************************:*********** C1 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C2 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C3 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C4 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C5 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C6 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C7 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C8 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C9 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C10 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL ************************************************** C1 TETDCDSAVRELKKERSKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKR C2 TETDCDSAVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKR C3 TETDCDSAVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKR C4 TETDCDSAVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRPRKR C5 TETDCDSAVRELKKERGKRRAERKRLEAGERTPVDGDGAGGQLQRRPRKR C6 TETDCDSTVRELKKERGKRRAERKRLEAGERTPVGGEAADSQLQRRPRKR C7 TETDCDSTVRELKKERGKRRAERKRLEAGERTPGGGE-ADSQLQRRPRKR C8 TETDCDSTVREMKKERGKRRAERKRLEAGERTPADGE-ADSQMQRRPRKR C9 TETDCDSTVREIKKERGKRRADRKRQEAGERTPVSGE-ADTQVQRRPLKR C10 TETDCDSTVRELKKERGKRRAERKRQEAGERTPGGGE-ADAQLQRRPRKR *******:***:****.****:*** ******* .*: :. *:***. ** C1 MRICFGRNTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY C2 MRICFGRNTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY C3 MRICFGRNTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY C4 MRICFGRNTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY C5 MRICFGRNTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY C6 MRICFGRNTNTANIIAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY C7 MRICFGRNTNTANIVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY C8 MRICFGRNTNTANIVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY C9 MRIYFGRNTNTANITAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY C10 IRICFGRNTNTANIAAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY :** *********: *********************************** C1 DNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNA C2 DNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNA C3 DNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNA C4 DNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNA C5 DNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNA C6 DNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNA C7 DNKSHAGTELTTVSSDAEDYRTSNANEIITLSQQVAHATQHHLIASHLNA C8 DNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNA C9 DNKSHAGTELTTVSSDAEDYRTSNANEIITLSQQVAHATQHHLIASHLNA C10 DNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNA *****************:******************************** C1 ITPLAQSIAMGGVGCLTTTTPSEKALSGAGTVAGA----V--AGGSG--S C2 ITPLAQSIAMGGVGCLTTTSPSEKALSGAGTVAGA----V--AGGSG--S C3 ITPLAQSIAMGGVGCLTTTSPSEKALSGAGTVGGA----V--AGGSG--S C4 ITPLAQSIAMGGVACLTTTSPSEKAVSGAGAGTGTGVGAG--AGGSG--S C5 ITPLAQSIAMGGVGCLAATSPSERAVSGAGAGAGAGAGAGTVAVGSG--N C6 ITPLAQSIAMGGAGCLTTTSPSEKPGAAGGG--GG-------SGEVG--- C7 ITPLAQSIAMGGAGCLTTTSPSEKLGAGGGGPGGG-------AGGEA--- C8 ITPLAQSIAMGGAGCLTTTSPSEKPGAGG-------------SGEEV--- C9 ITPLAQSIAMGGAGCLTTTSPPERGGGGGGAGIGG-------PGGGGETA C10 ITPLAQSIAMGGAGCLATTLPSANEGGGGGGGVAG-------GAGG---- ************..**::* *. . ... C1 GSGEEGAGTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT C2 GSGEEGAGTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT C3 GSGEEGAGTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT C4 GSGEEGPGTEGKSAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT C5 GSGEEGPGTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT C6 -AGTEGS-SPGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT C7 -AGTEGS-SPGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT C8 -SGTEGT-SPGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT C9 AAGTEGS-SPGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT C10 -AGTEGS-SPGKSAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT :* **. : **.************************************* C1 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP C2 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP C3 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP C4 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP C5 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP C6 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP C7 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP C8 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP C9 LAIITGAFVICWLPFFVMALTMSLCKECEIHAAVASLFLWLGYFNSTLNP C10 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP *******************************:****************** C1 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIooooooo---------- C2 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIooooooo---------- C3 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIooooooo---------- C4 VIYTIFNPEFRRAFKRILFGRKAAARARSAKI----------------- C5 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIo---------------- C6 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIoooooooooooooo--- C7 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIoooooooooo------- C8 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIooooooooooooooooo C9 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIoooooooooo------- C10 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIooooooooooooo---- ******************************** PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT