--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Fri Nov 25 18:23:05 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/1/5-HT1B-PA/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -5869.20 -5883.86
2 -5868.64 -5884.87
--------------------------------------
TOTAL -5868.88 -5884.48
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.698389 0.002576 0.605267 0.801714 0.696879 1375.44 1438.22 1.000
r(A<->C){all} 0.120937 0.000289 0.090629 0.156427 0.120415 1013.83 1069.95 1.001
r(A<->G){all} 0.204322 0.000472 0.163859 0.248913 0.203521 769.95 829.06 1.000
r(A<->T){all} 0.115335 0.000428 0.076952 0.157425 0.113920 1071.85 1092.66 1.000
r(C<->G){all} 0.090379 0.000149 0.066840 0.114015 0.089697 1028.96 1106.95 1.000
r(C<->T){all} 0.418041 0.000928 0.358717 0.476712 0.418129 845.32 916.44 1.000
r(G<->T){all} 0.050986 0.000136 0.026899 0.071913 0.050297 908.68 978.62 1.000
pi(A){all} 0.220078 0.000084 0.202436 0.237750 0.220047 1094.70 1105.02 1.000
pi(C){all} 0.278215 0.000091 0.260031 0.297187 0.278058 1011.63 1076.66 1.000
pi(G){all} 0.306679 0.000105 0.287280 0.326855 0.306656 1143.81 1145.85 1.000
pi(T){all} 0.195028 0.000077 0.177907 0.212454 0.194909 919.11 994.02 1.000
alpha{1,2} 0.174656 0.000534 0.129548 0.219481 0.173143 830.49 1038.11 1.000
alpha{3} 2.595419 0.562485 1.284599 4.018486 2.486756 1265.95 1316.22 1.000
pinvar{all} 0.444475 0.001668 0.365685 0.523182 0.447343 730.32 1017.75 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -5171.587149
Model 2: PositiveSelection -5171.070065
Model 0: one-ratio -5271.489567
Model 3: discrete -5169.548705
Model 7: beta -5171.548293
Model 8: beta&w>1 -5169.73333
Model 0 vs 1 199.80483599999934
Model 2 vs 1 1.034168000000136
Model 8 vs 7 3.629925999999614
>C1
MLKTVTTAMAAGDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS
NLSQIVWNRSINGNGNSNTFDLVDDEQERAAVEFWLLVKMIAMAVVLGLM
ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY
EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL
RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY
QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS
AVRELKKERSKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGR
NTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAG
TELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQS
IAMGGVGCLTTTTPSEKALSGAGTVAGAVAGGSGSGSGEEGAGTEGKNAG
VGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPF
FVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFK
RILFGRKAAARARSAKIooooooo
>C2
MLKTVTTAMAADDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS
NLSQIVWNRSVSGNGNSNTFDLVDDEQQRAAVEFWLLVKMIAMAVVLGLM
ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY
EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL
RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY
QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS
AVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGR
NTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAG
TELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQS
IAMGGVGCLTTTSPSEKALSGAGTVAGAVAGGSGSGSGEEGAGTEGKNAG
VGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPF
FVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFK
RILFGRKAAARARSAKIooooooo
>C3
MLKTVTTAMAAGDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS
NLSQIVWNRSENGNGNSNTFDLVDDEQQRAAVEFWLLVKMIAMAVVLGLM
ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY
EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL
RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY
QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS
AVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGR
NTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAG
TELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQS
IAMGGVGCLTTTSPSEKALSGAGTVGGAVAGGSGSGSGEEGAGTEGKNAG
VGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPF
FVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFK
RILFGRKAAARARSAKIooooooo
>C4
MLKTVTTAMMAASDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT
NTTNLSQIVWNRSENGNGNSNIFDLVDDEQKRAAVQFWLLVKMIAMAVVL
GLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLG
AVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDY
NNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQD
VGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETD
CDSAVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRPRKRMRIC
FGRNTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKS
HAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPL
AQSIAMGGVACLTTTSPSEKAVSGAGAGTGTGVGAGAGGSGSGSGEEGPG
TEGKSAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAF
VICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNP
EFRRAFKRILFGRKAAARARSAKI
>C5
MLKTVTTAMAAGDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTT
NLSQIAWNRSENGNGNSNVFDPVDDEQKRAAVQFWLLVKMIAMAVVLGLM
ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY
EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL
RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY
QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS
AVRELKKERGKRRAERKRLEAGERTPVDGDGAGGQLQRRPRKRMRICFGR
NTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAG
TELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQS
IAMGGVGCLAATSPSERAVSGAGAGAGAGAGAGTVAVGSGNGSGEEGPGT
EGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFV
ICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPE
FRRAFKRILFGRKAAARARSAKIo
>C6
MLKTVTTAMAAADDDDIPASILEIELPAILLNESLFIELNGNLTQLVDTT
SNLSQIVWNRTENGNGNGNIFDLDAEQRATVEFWLLVKMIAMAVVLGLMI
LVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYE
ISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNLR
TPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGYQ
IFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDST
VRELKKERGKRRAERKRLEAGERTPVGGEAADSQLQRRPRKRMRICFGRN
TNTANIIAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAGT
ELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSI
AMGGAGCLTTTSPSEKPGAAGGGGGSGEVGAGTEGSSPGKNAGVGLGGVL
ASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTM
SLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFGRK
AAARARSAKIoooooooooooooo
>C7
MLKTVTTAMAAADDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS
NLSQIAWNRTANGNGNGNGNSNIFDLDEQQRAAVEFWLLVKMIAMAVVLG
LMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGA
VYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYN
NLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPEYMKRIEEQHCMVSQDV
GYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDC
DSTVRELKKERGKRRAERKRLEAGERTPGGGEADSQLQRRPRKRMRICFG
RNTNTANIVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHA
GTELTTVSSDAEDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQ
SIAMGGAGCLTTTSPSEKLGAGGGGPGGGAGGEAAGTEGSSPGKNAGVGL
GGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVM
ALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRIL
FGRKAAARARSAKIoooooooooo
>C8
MLKTVTTAMAAADDNVPASILEIELPAILLNESLFIELNGNLTQLVDTTS
NLSQIVWNRSKLENGNDNNSNIFDLDAEQRAAVEFWLLVKMIAMAVVLGL
MILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAV
YEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNN
LRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVG
YQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCD
STVREMKKERGKRRAERKRLEAGERTPADGEADSQMQRRPRKRMRICFGR
NTNTANIVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAG
TELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQS
IAMGGAGCLTTTSPSEKPGAGGSGEEVSGTEGTSPGKNAGVGLGGVLASI
ANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTMSLC
KECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFGRKAAA
RARSAKIooooooooooooooooo
>C9
MLKTVTTAMAVADDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTT
NLSQIVWNRSENGNGNSNIFDLDDEERAAVEFWLLVKMIAMAVVLGLMIL
VTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEI
SNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNLRT
PRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGYQI
FATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDSTV
REIKKERGKRRADRKRQEAGERTPVSGEADTQVQRRPLKRMRIYFGRNTN
TANITAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAGTEL
TTVSSDAEDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAM
GGAGCLTTTSPPERGGGGGGAGIGGPGGGGETAAAGTEGSSPGKNAGVGL
GGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVM
ALTMSLCKECEIHAAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRIL
FGRKAAARARSAKIoooooooooo
>C10
MLKTVTTAMAATDDDVAASILEIELPAILLNESLFIELNGNLTQLLDTTS
NLSQIIWNRSENGYGSGNTSTLDMDAEQRAAVEFWLLVKMIAMAVVLGLM
ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY
EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL
RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY
QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS
TVRELKKERGKRRAERKRQEAGERTPGGGEADAQLQRRPRKRIRICFGRN
TNTANIAAGSEGAVARSMAAIAVDFASLAITREETEFSTSNYDNKSHAGT
ELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSI
AMGGAGCLATTLPSANEGGGGGGGVAGGAGGAGTEGSSPGKSAGVGLGGV
LASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALT
MSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFGR
KAAARARSAKIooooooooooooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=99, Nseq=10, Len=649
C1 MLKTVTTAMAAG-DDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT
C2 MLKTVTTAMAAD-DDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT
C3 MLKTVTTAMAAG-DDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT
C4 MLKTVTTAMMAASDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT
C5 MLKTVTTAMAAG-DDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT
C6 MLKTVTTAMAAADDDDIPASILEIELPAILLNESLFIELNGNLTQLVDTT
C7 MLKTVTTAMAAADDD-VPASILEIELPAILLNESLFIELNGNLTQLVDTT
C8 MLKTVTTAMAAADDN-VPASILEIELPAILLNESLFIELNGNLTQLVDTT
C9 MLKTVTTAMAVADDD-VPASILEIELPAILLNESLFIELNGNLTQLVDTT
C10 MLKTVTTAMAATDDD-VAASILEIELPAILLNESLFIELNGNLTQLLDTT
********* . *: :.****************************:***
C1 --SNLSQIVWNRSINGNGNSN----TFDLVDDEQERAAVEFWLLVKMIAM
C2 --SNLSQIVWNRSVSGNGNSN----TFDLVDDEQQRAAVEFWLLVKMIAM
C3 --SNLSQIVWNRSENGNGNSN----TFDLVDDEQQRAAVEFWLLVKMIAM
C4 NTTNLSQIVWNRSENGNGNSN----IFDLVDDEQKRAAVQFWLLVKMIAM
C5 --TNLSQIAWNRSENGNGNSN----VFDPVDDEQKRAAVQFWLLVKMIAM
C6 --SNLSQIVWNRTENGNGNGN----IFDLDAEQ--RATVEFWLLVKMIAM
C7 --SNLSQIAWNRTANGNGNGNGNSNIFDLDEQQ--RAAVEFWLLVKMIAM
C8 --SNLSQIVWNRSKLENGNDN-NSNIFDLDAEQ--RAAVEFWLLVKMIAM
C9 --TNLSQIVWNRSEN--GNGN--SNIFDLDDEE--RAAVEFWLLVKMIAM
C10 --SNLSQIIWNRSENGYGSGN--TSTLDMDAEQ--RAAVEFWLLVKMIAM
:***** ***: *..* :* :: **:*:**********
C1 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C2 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C3 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C4 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C5 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C6 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C7 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C8 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C9 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C10 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
**************************************************
C1 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C2 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C3 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C4 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C5 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C6 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C7 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C8 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C9 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C10 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
**************************************************
C1 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
C2 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
C3 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
C4 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
C5 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
C6 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
C7 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPEYMKRIEEQHCM
C8 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
C9 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
C10 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
**************************************:***********
C1 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C2 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C3 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C4 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C5 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C6 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C7 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C8 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C9 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C10 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
**************************************************
C1 TETDCDSAVRELKKERSKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKR
C2 TETDCDSAVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKR
C3 TETDCDSAVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKR
C4 TETDCDSAVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRPRKR
C5 TETDCDSAVRELKKERGKRRAERKRLEAGERTPVDGDGAGGQLQRRPRKR
C6 TETDCDSTVRELKKERGKRRAERKRLEAGERTPVGGEAADSQLQRRPRKR
C7 TETDCDSTVRELKKERGKRRAERKRLEAGERTPGGGE-ADSQLQRRPRKR
C8 TETDCDSTVREMKKERGKRRAERKRLEAGERTPADGE-ADSQMQRRPRKR
C9 TETDCDSTVREIKKERGKRRADRKRQEAGERTPVSGE-ADTQVQRRPLKR
C10 TETDCDSTVRELKKERGKRRAERKRQEAGERTPGGGE-ADAQLQRRPRKR
*******:***:****.****:*** ******* .*: :. *:***. **
C1 MRICFGRNTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY
C2 MRICFGRNTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY
C3 MRICFGRNTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY
C4 MRICFGRNTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY
C5 MRICFGRNTNTANVVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY
C6 MRICFGRNTNTANIIAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY
C7 MRICFGRNTNTANIVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY
C8 MRICFGRNTNTANIVAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY
C9 MRIYFGRNTNTANITAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY
C10 IRICFGRNTNTANIAAGSEGAVARSMAAIAVDFASLAITREETEFSTSNY
:** *********: ***********************************
C1 DNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNA
C2 DNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNA
C3 DNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNA
C4 DNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNA
C5 DNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNA
C6 DNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNA
C7 DNKSHAGTELTTVSSDAEDYRTSNANEIITLSQQVAHATQHHLIASHLNA
C8 DNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNA
C9 DNKSHAGTELTTVSSDAEDYRTSNANEIITLSQQVAHATQHHLIASHLNA
C10 DNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVAHATQHHLIASHLNA
*****************:********************************
C1 ITPLAQSIAMGGVGCLTTTTPSEKALSGAGTVAGA----V--AGGSG--S
C2 ITPLAQSIAMGGVGCLTTTSPSEKALSGAGTVAGA----V--AGGSG--S
C3 ITPLAQSIAMGGVGCLTTTSPSEKALSGAGTVGGA----V--AGGSG--S
C4 ITPLAQSIAMGGVACLTTTSPSEKAVSGAGAGTGTGVGAG--AGGSG--S
C5 ITPLAQSIAMGGVGCLAATSPSERAVSGAGAGAGAGAGAGTVAVGSG--N
C6 ITPLAQSIAMGGAGCLTTTSPSEKPGAAGGG--GG-------SGEVG---
C7 ITPLAQSIAMGGAGCLTTTSPSEKLGAGGGGPGGG-------AGGEA---
C8 ITPLAQSIAMGGAGCLTTTSPSEKPGAGG-------------SGEEV---
C9 ITPLAQSIAMGGAGCLTTTSPPERGGGGGGAGIGG-------PGGGGETA
C10 ITPLAQSIAMGGAGCLATTLPSANEGGGGGGGVAG-------GAGG----
************..**::* *. . ...
C1 GSGEEGAGTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT
C2 GSGEEGAGTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT
C3 GSGEEGAGTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT
C4 GSGEEGPGTEGKSAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT
C5 GSGEEGPGTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT
C6 -AGTEGS-SPGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT
C7 -AGTEGS-SPGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT
C8 -SGTEGT-SPGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT
C9 AAGTEGS-SPGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT
C10 -AGTEGS-SPGKSAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQT
:* **. : **.*************************************
C1 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP
C2 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP
C3 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP
C4 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP
C5 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP
C6 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP
C7 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP
C8 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP
C9 LAIITGAFVICWLPFFVMALTMSLCKECEIHAAVASLFLWLGYFNSTLNP
C10 LAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNP
*******************************:******************
C1 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIooooooo----------
C2 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIooooooo----------
C3 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIooooooo----------
C4 VIYTIFNPEFRRAFKRILFGRKAAARARSAKI-----------------
C5 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIo----------------
C6 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIoooooooooooooo---
C7 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIoooooooooo-------
C8 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIooooooooooooooooo
C9 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIoooooooooo-------
C10 VIYTIFNPEFRRAFKRILFGRKAAARARSAKIooooooooooooo----
********************************
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
-flip D [0] 0
-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
-blast_nseq D [0] 0
-lalign_n_top D [0] 10
-iterate D [1] 0
-trim D [0] 0
-split D [0] 0
-trimfile S [0] default
-split D [0] 0
-split_nseq_thres D [0] 0
-split_score_thres D [0] 0
-check_pdb_status D [0] 0
-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
-no_warning D [0] 0
-run_local_script D [0] 0
-plugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
gins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 624 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT1B-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 624 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/5-HT 