--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Tue Nov 08 17:03:59 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/166/CG5174-PB/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/166/CG5174-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/166/CG5174-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/166/CG5174-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -3353.89 -3369.07 2 -3354.35 -3367.46 -------------------------------------- TOTAL -3354.09 -3368.56 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/166/CG5174-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/166/CG5174-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/166/CG5174-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.705890 0.004421 0.571323 0.829272 0.701419 1255.72 1344.24 1.001 r(A<->C){all} 0.075168 0.000285 0.045704 0.111124 0.073760 1005.40 1061.69 1.000 r(A<->G){all} 0.205639 0.000875 0.152266 0.269385 0.204229 789.38 819.61 1.000 r(A<->T){all} 0.090334 0.000534 0.045138 0.133426 0.088583 621.92 894.37 1.001 r(C<->G){all} 0.074110 0.000216 0.046232 0.102487 0.073503 972.97 984.69 1.000 r(C<->T){all} 0.461108 0.001585 0.379539 0.534046 0.460163 640.87 785.81 1.001 r(G<->T){all} 0.093641 0.000400 0.056298 0.133442 0.092403 1118.39 1120.00 1.001 pi(A){all} 0.258116 0.000169 0.232439 0.282712 0.257908 1014.91 1038.27 1.000 pi(C){all} 0.274320 0.000164 0.250856 0.300275 0.273987 1188.95 1207.14 1.001 pi(G){all} 0.268123 0.000170 0.242735 0.293978 0.267938 1233.34 1246.40 1.000 pi(T){all} 0.199441 0.000134 0.176593 0.220637 0.199205 1058.98 1136.01 1.000 alpha{1,2} 0.163709 0.000705 0.112804 0.214446 0.161292 912.04 1016.46 1.003 alpha{3} 2.542699 0.608396 1.210670 4.103541 2.422947 1250.00 1375.50 1.000 pinvar{all} 0.439988 0.002523 0.342189 0.538213 0.444141 1078.67 1273.00 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -3176.077347 Model 2: PositiveSelection -3175.436621 Model 0: one-ratio -3203.862092 Model 3: discrete -3172.386565 Model 7: beta -3175.763239 Model 8: beta&w>1 -3172.46162 Model 0 vs 1 55.56948999999986 Model 2 vs 1 1.2814520000001721 Model 8 vs 7 6.603237999999692 Additional information for M7 vs M8: Naive Empirical Bayes (NEB) analysis Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_CG5174-PB) Pr(w>1) post mean +- SE for w 34 N 0.993** 4.347 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_CG5174-PB) Pr(w>1) post mean +- SE for w 34 N 0.987* 1.516 +- 0.252 35 D 0.812 1.347 +- 0.386 42 G 0.504 0.980 +- 0.568 149 K 0.686 1.207 +- 0.484 158 E 0.561 1.078 +- 0.512
>C1 MSESEPNSLEFIEDPYLPSIDDLTSTPSLDLETNDAVLDWYGDGQEESEA ELYLRNLTLDQIFYDVDSDYTNSLELQAVEADFIAAKLANQAPSSSMAKR FRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTKF DNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARVEEE INTLRTVLASKTRHASDLKRKLGITVWKEVTDDVNQGLKNLKESTVYQSV EQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQMK NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSPT DSLPKo >C2 MSESEPNSLEFIEDPYLPSIDDLTSTPSLDLETNEAVLDWYGDGQEESEA ELYLRNLTLDQIFYDVDSDYTNSLELQAVEADFIAAKLANQAPSSSMAKR FRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSKGTQF HNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARVEEE INTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGLKNLKESTVYQSV EQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQMK NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSPT DSLPKo >C3 MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLETSESVLDWYEDGQEESEA ELYLRNLTLDQIFYDVDSDYTNSLELQAVEADFIGAKLANQAPSSSMAKR FRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIAHRSRGTKF DNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARVEEE INTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGLKNLKESTVYQSV EQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQMK NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSPT DSITKo >C4 MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLETTEAVLDWYEDGQEESEA ELYLRNLTLDQIFYDVDSDYTNSLELQAVEADFIGAKLANQAPSSSMAKR FRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTKL DNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARVEEE INTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGLKNLKESTVYQSV EQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQMK NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSPT DSLooo >C5 MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLEASEAVLDWYGDGQEESEA DFYLRNLTLDQIFYDVDSDYSNSLELQAVEAEFIGAKLANQAPSSSMAKR FRLKFFTKRSMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTKF DNTANLSDPASPAASVASAEIAAEFAALSVEEKEQRRADWTQELARVEEE INTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIKNLKESTVYQSV EQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQMK NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSPT DSLTKo >C6 MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLETNDAVLDWYGDEQEDSEA ELYLRNLTLDQIFYDVDSDYTNNLELQTVETEFIGAKLANQAPSSSIAKR FRLKFFTKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGNRSRGTKF DNTANLSDPASPAASVASAEIAAEFAALTVEEKEQRRAEWSQELARVEEE INTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIKNLKESTVYQSV EQSLGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKFSQMK NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFQDALDENNTSSGLNSPT DSoooo >C7 MSESEPNSLEFIEDPYLPGIDDLTSTPSLDLETPEAALDWYGDEQEESEA ELYLRNLTLDQIFYDVDSDYTNSLELQAVEAEFIGAKLANQTPSSSIAKR FRLKFFTKRTMRDVRVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTKF DNTANLSDPASPAASVASAEIAAEFAALSVEEKEQRRAEWSQELARVEEE INTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIRNLKESTVYQSV EQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQMK NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSPT DSLTKo >C8 MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLEANDATLDWYGDGEEESEA ELYLRNLTLDQIFYDVDSDYTNSLELQAVEAEFIGAKLANQAPSSSMAKR FRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTKF DNTANLSEPASPAASVASAEIAAEFAALSVEEKEQRRAEWSQELARVEEE INTLRTVLASKTRHACDLKRKLGITVWKEVTDDMNQGIKNLKETTVYQSV EQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQMK NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSPT DSLTKo >C9 MSESEPNSLDFIEDSYLPGIDDLTSTPSLDLEAHDATIDWYDDGQEDSEA ELYLRNLTLDQIFYDVDSDYTNSLELQAVEAEFIGAKLANQAPSSSMAKR FRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTKF DNTANLSDPASPAASVASAEIAAEFAALSVEEKEQRRAEWSQELARVEEE INTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIKNLKETTVYQSV EQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQMK NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDAMDEHNTSSGLNSPT DSLTKo >C10 MSESEPNSLEFIEDSYLPGIDDLTSTPSLDPEATDAVLDWHGDGQEEESE AELYLRNLTLDQIFYDVDSDYTNSLELQAVEAEFIGAKLANQAPSSSMAK RFRLKFFAKRSMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGQRSRGTS LDNTANLSEPASPAASVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIKNLKETTVYQS VEQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP TDSLTK CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=357 C1 MSESEPNSLEFIEDPYLPSIDDLTSTPSLDLETNDAVLDWYGDGQEE-SE C2 MSESEPNSLEFIEDPYLPSIDDLTSTPSLDLETNEAVLDWYGDGQEE-SE C3 MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLETSESVLDWYEDGQEE-SE C4 MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLETTEAVLDWYEDGQEE-SE C5 MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLEASEAVLDWYGDGQEE-SE C6 MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLETNDAVLDWYGDEQED-SE C7 MSESEPNSLEFIEDPYLPGIDDLTSTPSLDLETPEAALDWYGDEQEE-SE C8 MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLEANDATLDWYGDGEEE-SE C9 MSESEPNSLDFIEDSYLPGIDDLTSTPSLDLEAHDATIDWYDDGQED-SE C10 MSESEPNSLEFIEDSYLPGIDDLTSTPSLDPEATDAVLDWHGDGQEEESE *********:****.***.*********** *: ::.:**: * :*: ** C1 AELYLRNLTLDQIFYDVDSDYTNSLELQAVEADFIAAKLANQAPSSSMAK C2 AELYLRNLTLDQIFYDVDSDYTNSLELQAVEADFIAAKLANQAPSSSMAK C3 AELYLRNLTLDQIFYDVDSDYTNSLELQAVEADFIGAKLANQAPSSSMAK C4 AELYLRNLTLDQIFYDVDSDYTNSLELQAVEADFIGAKLANQAPSSSMAK C5 ADFYLRNLTLDQIFYDVDSDYSNSLELQAVEAEFIGAKLANQAPSSSMAK C6 AELYLRNLTLDQIFYDVDSDYTNNLELQTVETEFIGAKLANQAPSSSIAK C7 AELYLRNLTLDQIFYDVDSDYTNSLELQAVEAEFIGAKLANQTPSSSIAK C8 AELYLRNLTLDQIFYDVDSDYTNSLELQAVEAEFIGAKLANQAPSSSMAK C9 AELYLRNLTLDQIFYDVDSDYTNSLELQAVEAEFIGAKLANQAPSSSMAK C10 AELYLRNLTLDQIFYDVDSDYTNSLELQAVEAEFIGAKLANQAPSSSMAK *::******************:*.****:**::**.******:****:** C1 RFRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTK C2 RFRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSKGTQ C3 RFRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIAHRSRGTK C4 RFRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTK C5 RFRLKFFTKRSMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTK C6 RFRLKFFTKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGNRSRGTK C7 RFRLKFFTKRTMRDVRVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTK C8 RFRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTK C9 RFRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTK C10 RFRLKFFAKRSMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGQRSRGTS *******:**:****:**************************.:**:**. C1 FDNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE C2 FHNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE C3 FDNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE C4 LDNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE C5 FDNTANLSDPASPAASVASAEIAAEFAALSVEEKEQRRADWTQELARVEE C6 FDNTANLSDPASPAASVASAEIAAEFAALTVEEKEQRRAEWSQELARVEE C7 FDNTANLSDPASPAASVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE C8 FDNTANLSEPASPAASVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE C9 FDNTANLSDPASPAASVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE C10 LDNTANLSEPASPAASVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE :.******:***** **************:*********:*:******** C1 EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDVNQGLKNLKESTVYQS C2 EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGLKNLKESTVYQS C3 EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGLKNLKESTVYQS C4 EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGLKNLKESTVYQS C5 EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIKNLKESTVYQS C6 EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIKNLKESTVYQS C7 EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIRNLKESTVYQS C8 EINTLRTVLASKTRHACDLKRKLGITVWKEVTDDMNQGIKNLKETTVYQS C9 EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIKNLKETTVYQS C10 EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIKNLKETTVYQS ****************.*****************:***::****:***** C1 VEQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM C2 VEQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM C3 VEQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM C4 VEQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM C5 VEQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM C6 VEQSLGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKFSQM C7 VEQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM C8 VEQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM C9 VEQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM C10 VEQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM ****:*****:*:*********************************:*** C1 KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP C2 KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP C3 KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP C4 KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP C5 KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP C6 KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFQDALDENNTSSGLNSP C7 KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP C8 KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP C9 KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDAMDEHNTSSGLNSP C10 KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP ********************************** **:**:********* C1 TDSLPKo C2 TDSLPKo C3 TDSITKo C4 TDSLooo C5 TDSLTKo C6 TDSoooo C7 TDSLTKo C8 TDSLTKo C9 TDSLTKo C10 TDSLTK- *** PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 356 type PROTEIN Struct Unchecked Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 356 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -du