--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Tue Nov 08 17:03:59 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/166/CG5174-PB/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/166/CG5174-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/166/CG5174-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/166/CG5174-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -3353.89         -3369.07
2      -3354.35         -3367.46
--------------------------------------
TOTAL    -3354.09         -3368.56
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/166/CG5174-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/166/CG5174-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/166/CG5174-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.705890    0.004421    0.571323    0.829272    0.701419   1255.72   1344.24    1.001
r(A<->C){all}   0.075168    0.000285    0.045704    0.111124    0.073760   1005.40   1061.69    1.000
r(A<->G){all}   0.205639    0.000875    0.152266    0.269385    0.204229    789.38    819.61    1.000
r(A<->T){all}   0.090334    0.000534    0.045138    0.133426    0.088583    621.92    894.37    1.001
r(C<->G){all}   0.074110    0.000216    0.046232    0.102487    0.073503    972.97    984.69    1.000
r(C<->T){all}   0.461108    0.001585    0.379539    0.534046    0.460163    640.87    785.81    1.001
r(G<->T){all}   0.093641    0.000400    0.056298    0.133442    0.092403   1118.39   1120.00    1.001
pi(A){all}      0.258116    0.000169    0.232439    0.282712    0.257908   1014.91   1038.27    1.000
pi(C){all}      0.274320    0.000164    0.250856    0.300275    0.273987   1188.95   1207.14    1.001
pi(G){all}      0.268123    0.000170    0.242735    0.293978    0.267938   1233.34   1246.40    1.000
pi(T){all}      0.199441    0.000134    0.176593    0.220637    0.199205   1058.98   1136.01    1.000
alpha{1,2}      0.163709    0.000705    0.112804    0.214446    0.161292    912.04   1016.46    1.003
alpha{3}        2.542699    0.608396    1.210670    4.103541    2.422947   1250.00   1375.50    1.000
pinvar{all}     0.439988    0.002523    0.342189    0.538213    0.444141   1078.67   1273.00    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-3176.077347
Model 2: PositiveSelection	-3175.436621
Model 0: one-ratio	-3203.862092
Model 3: discrete	-3172.386565
Model 7: beta	-3175.763239
Model 8: beta&w>1	-3172.46162


Model 0 vs 1	55.56948999999986

Model 2 vs 1	1.2814520000001721

Model 8 vs 7	6.603237999999692

Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_CG5174-PB)

            Pr(w>1)     post mean +- SE for w

    34 N      0.993**       4.347

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_CG5174-PB)

            Pr(w>1)     post mean +- SE for w

    34 N      0.987*        1.516 +- 0.252
    35 D      0.812         1.347 +- 0.386
    42 G      0.504         0.980 +- 0.568
   149 K      0.686         1.207 +- 0.484
   158 E      0.561         1.078 +- 0.512

>C1
MSESEPNSLEFIEDPYLPSIDDLTSTPSLDLETNDAVLDWYGDGQEESEA
ELYLRNLTLDQIFYDVDSDYTNSLELQAVEADFIAAKLANQAPSSSMAKR
FRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTKF
DNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARVEEE
INTLRTVLASKTRHASDLKRKLGITVWKEVTDDVNQGLKNLKESTVYQSV
EQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQMK
NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSPT
DSLPKo
>C2
MSESEPNSLEFIEDPYLPSIDDLTSTPSLDLETNEAVLDWYGDGQEESEA
ELYLRNLTLDQIFYDVDSDYTNSLELQAVEADFIAAKLANQAPSSSMAKR
FRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSKGTQF
HNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARVEEE
INTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGLKNLKESTVYQSV
EQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQMK
NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSPT
DSLPKo
>C3
MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLETSESVLDWYEDGQEESEA
ELYLRNLTLDQIFYDVDSDYTNSLELQAVEADFIGAKLANQAPSSSMAKR
FRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIAHRSRGTKF
DNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARVEEE
INTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGLKNLKESTVYQSV
EQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQMK
NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSPT
DSITKo
>C4
MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLETTEAVLDWYEDGQEESEA
ELYLRNLTLDQIFYDVDSDYTNSLELQAVEADFIGAKLANQAPSSSMAKR
FRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTKL
DNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARVEEE
INTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGLKNLKESTVYQSV
EQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQMK
NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSPT
DSLooo
>C5
MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLEASEAVLDWYGDGQEESEA
DFYLRNLTLDQIFYDVDSDYSNSLELQAVEAEFIGAKLANQAPSSSMAKR
FRLKFFTKRSMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTKF
DNTANLSDPASPAASVASAEIAAEFAALSVEEKEQRRADWTQELARVEEE
INTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIKNLKESTVYQSV
EQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQMK
NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSPT
DSLTKo
>C6
MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLETNDAVLDWYGDEQEDSEA
ELYLRNLTLDQIFYDVDSDYTNNLELQTVETEFIGAKLANQAPSSSIAKR
FRLKFFTKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGNRSRGTKF
DNTANLSDPASPAASVASAEIAAEFAALTVEEKEQRRAEWSQELARVEEE
INTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIKNLKESTVYQSV
EQSLGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKFSQMK
NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFQDALDENNTSSGLNSPT
DSoooo
>C7
MSESEPNSLEFIEDPYLPGIDDLTSTPSLDLETPEAALDWYGDEQEESEA
ELYLRNLTLDQIFYDVDSDYTNSLELQAVEAEFIGAKLANQTPSSSIAKR
FRLKFFTKRTMRDVRVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTKF
DNTANLSDPASPAASVASAEIAAEFAALSVEEKEQRRAEWSQELARVEEE
INTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIRNLKESTVYQSV
EQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQMK
NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSPT
DSLTKo
>C8
MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLEANDATLDWYGDGEEESEA
ELYLRNLTLDQIFYDVDSDYTNSLELQAVEAEFIGAKLANQAPSSSMAKR
FRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTKF
DNTANLSEPASPAASVASAEIAAEFAALSVEEKEQRRAEWSQELARVEEE
INTLRTVLASKTRHACDLKRKLGITVWKEVTDDMNQGIKNLKETTVYQSV
EQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQMK
NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSPT
DSLTKo
>C9
MSESEPNSLDFIEDSYLPGIDDLTSTPSLDLEAHDATIDWYDDGQEDSEA
ELYLRNLTLDQIFYDVDSDYTNSLELQAVEAEFIGAKLANQAPSSSMAKR
FRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTKF
DNTANLSDPASPAASVASAEIAAEFAALSVEEKEQRRAEWSQELARVEEE
INTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIKNLKETTVYQSV
EQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQMK
NSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDAMDEHNTSSGLNSPT
DSLTKo
>C10
MSESEPNSLEFIEDSYLPGIDDLTSTPSLDPEATDAVLDWHGDGQEEESE
AELYLRNLTLDQIFYDVDSDYTNSLELQAVEAEFIGAKLANQAPSSSMAK
RFRLKFFAKRSMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGQRSRGTS
LDNTANLSEPASPAASVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE
EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIKNLKETTVYQS
VEQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM
KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP
TDSLTK
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=357 

C1              MSESEPNSLEFIEDPYLPSIDDLTSTPSLDLETNDAVLDWYGDGQEE-SE
C2              MSESEPNSLEFIEDPYLPSIDDLTSTPSLDLETNEAVLDWYGDGQEE-SE
C3              MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLETSESVLDWYEDGQEE-SE
C4              MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLETTEAVLDWYEDGQEE-SE
C5              MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLEASEAVLDWYGDGQEE-SE
C6              MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLETNDAVLDWYGDEQED-SE
C7              MSESEPNSLEFIEDPYLPGIDDLTSTPSLDLETPEAALDWYGDEQEE-SE
C8              MSESEPNSLEFIEDSYLPGIDDLTSTPSLDLEANDATLDWYGDGEEE-SE
C9              MSESEPNSLDFIEDSYLPGIDDLTSTPSLDLEAHDATIDWYDDGQED-SE
C10             MSESEPNSLEFIEDSYLPGIDDLTSTPSLDPEATDAVLDWHGDGQEEESE
                *********:****.***.*********** *: ::.:**: * :*: **

C1              AELYLRNLTLDQIFYDVDSDYTNSLELQAVEADFIAAKLANQAPSSSMAK
C2              AELYLRNLTLDQIFYDVDSDYTNSLELQAVEADFIAAKLANQAPSSSMAK
C3              AELYLRNLTLDQIFYDVDSDYTNSLELQAVEADFIGAKLANQAPSSSMAK
C4              AELYLRNLTLDQIFYDVDSDYTNSLELQAVEADFIGAKLANQAPSSSMAK
C5              ADFYLRNLTLDQIFYDVDSDYSNSLELQAVEAEFIGAKLANQAPSSSMAK
C6              AELYLRNLTLDQIFYDVDSDYTNNLELQTVETEFIGAKLANQAPSSSIAK
C7              AELYLRNLTLDQIFYDVDSDYTNSLELQAVEAEFIGAKLANQTPSSSIAK
C8              AELYLRNLTLDQIFYDVDSDYTNSLELQAVEAEFIGAKLANQAPSSSMAK
C9              AELYLRNLTLDQIFYDVDSDYTNSLELQAVEAEFIGAKLANQAPSSSMAK
C10             AELYLRNLTLDQIFYDVDSDYTNSLELQAVEAEFIGAKLANQAPSSSMAK
                *::******************:*.****:**::**.******:****:**

C1              RFRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTK
C2              RFRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSKGTQ
C3              RFRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIAHRSRGTK
C4              RFRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTK
C5              RFRLKFFTKRSMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTK
C6              RFRLKFFTKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGNRSRGTK
C7              RFRLKFFTKRTMRDVRVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTK
C8              RFRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTK
C9              RFRLKFFAKRTMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGHRSRGTK
C10             RFRLKFFAKRSMRDVKVTFIDFSKPYLAKISNSDNYKRFLNIGQRSRGTS
                *******:**:****:**************************.:**:**.

C1              FDNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE
C2              FHNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE
C3              FDNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE
C4              LDNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE
C5              FDNTANLSDPASPAASVASAEIAAEFAALSVEEKEQRRADWTQELARVEE
C6              FDNTANLSDPASPAASVASAEIAAEFAALTVEEKEQRRAEWSQELARVEE
C7              FDNTANLSDPASPAASVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE
C8              FDNTANLSEPASPAASVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE
C9              FDNTANLSDPASPAASVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE
C10             LDNTANLSEPASPAASVASAEIAAEFAALSVEEKEQRRAEWSQELARVEE
                :.******:***** **************:*********:*:********

C1              EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDVNQGLKNLKESTVYQS
C2              EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGLKNLKESTVYQS
C3              EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGLKNLKESTVYQS
C4              EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGLKNLKESTVYQS
C5              EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIKNLKESTVYQS
C6              EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIKNLKESTVYQS
C7              EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIRNLKESTVYQS
C8              EINTLRTVLASKTRHACDLKRKLGITVWKEVTDDMNQGIKNLKETTVYQS
C9              EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIKNLKETTVYQS
C10             EINTLRTVLASKTRHASDLKRKLGITVWKEVTDDMNQGIKNLKETTVYQS
                ****************.*****************:***::****:*****

C1              VEQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM
C2              VEQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM
C3              VEQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM
C4              VEQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM
C5              VEQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM
C6              VEQSLGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKFSQM
C7              VEQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM
C8              VEQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM
C9              VEQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM
C10             VEQSVGTFTKAVHEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLSQM
                ****:*****:*:*********************************:***

C1              KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP
C2              KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP
C3              KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP
C4              KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP
C5              KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP
C6              KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFQDALDENNTSSGLNSP
C7              KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP
C8              KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP
C9              KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDAMDEHNTSSGLNSP
C10             KNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLNSP
                ********************************** **:**:*********

C1              TDSLPKo
C2              TDSLPKo
C3              TDSITKo
C4              TDSLooo
C5              TDSLTKo
C6              TDSoooo
C7              TDSLTKo
C8              TDSLTKo
C9              TDSLTKo
C10             TDSLTK-
                ***    




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  356 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  356 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/166/CG5174-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-du