--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Mon Oct 31 10:03:50 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/111/CG31368-PC/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/111/CG31368-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/111/CG31368-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/111/CG31368-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -12345.62 -12360.00 2 -12345.87 -12360.99 -------------------------------------- TOTAL -12345.74 -12360.61 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/111/CG31368-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/111/CG31368-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/111/CG31368-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.673360 0.001010 0.611757 0.735615 0.672041 1149.94 1296.53 1.000 r(A<->C){all} 0.061829 0.000070 0.047315 0.079265 0.061442 1120.07 1218.91 1.000 r(A<->G){all} 0.270948 0.000322 0.235603 0.305607 0.270363 720.28 806.17 1.000 r(A<->T){all} 0.089034 0.000120 0.068376 0.110390 0.088809 970.04 1068.46 1.000 r(C<->G){all} 0.059363 0.000052 0.046438 0.074670 0.059144 980.14 1094.36 1.000 r(C<->T){all} 0.454686 0.000433 0.411272 0.493846 0.454600 844.73 927.17 1.001 r(G<->T){all} 0.064141 0.000071 0.047254 0.079988 0.063927 994.48 1057.23 1.000 pi(A){all} 0.253109 0.000038 0.241033 0.265103 0.253152 958.13 1147.09 1.001 pi(C){all} 0.260984 0.000036 0.248914 0.272244 0.260811 1011.10 1089.11 1.000 pi(G){all} 0.271549 0.000041 0.259081 0.283569 0.271645 1065.24 1067.08 1.000 pi(T){all} 0.214358 0.000031 0.203862 0.225402 0.214350 1190.26 1327.72 1.000 alpha{1,2} 0.057864 0.000750 0.004660 0.098167 0.065008 811.79 919.84 1.000 alpha{3} 6.551354 1.730500 4.262738 9.241560 6.446833 1166.94 1247.53 1.001 pinvar{all} 0.293410 0.000896 0.235704 0.352235 0.292862 870.65 1051.71 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -11492.959322 Model 2: PositiveSelection -11492.409807 Model 0: one-ratio -11580.086072 Model 3: discrete -11486.143946 Model 7: beta -11490.242809 Model 8: beta&w>1 -11486.398201 Model 0 vs 1 174.2534999999989 Model 2 vs 1 1.0990300000012212 Model 8 vs 7 7.689215999998851 Additional information for M7 vs M8: Naive Empirical Bayes (NEB) analysis Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_CG31368-PC) Pr(w>1) post mean +- SE for w 784 E 0.549 1.232 787 T 0.868 1.739 789 S 0.544 1.221 791 L 0.634 1.366 965 S 0.631 1.362 1414 S 0.992** 1.935 1464 I 0.519 1.182 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_CG31368-PC) Pr(w>1) post mean +- SE for w 8 R 0.666 1.146 +- 0.520 19 T 0.534 0.979 +- 0.584 23 S 0.538 0.986 +- 0.580 257 P 0.595 1.052 +- 0.566 778 P 0.731 1.236 +- 0.450 782 P 0.802 1.310 +- 0.395 784 E 0.836 1.350 +- 0.349 787 T 0.932 1.442 +- 0.222 789 S 0.836 1.345 +- 0.361 791 L 0.865 1.374 +- 0.329 965 S 0.866 1.380 +- 0.314 969 G 0.567 1.053 +- 0.532 1009 I 0.791 1.299 +- 0.405 1414 S 0.982* 1.486 +- 0.105 1459 G 0.719 1.223 +- 0.459 1464 I 0.829 1.339 +- 0.365 1465 E 0.560 1.010 +- 0.577 1472 K 0.801 1.309 +- 0.395
>C1 MKRRSQTRAEQAVPPAKTTKENSGSLTVSQLSSDVIWQLASQYWTPDTKA DHLPYSAKIIERIYNEEIGDGGGHSARRINMLEFSQYLEQYLWPHYQRET ATHAHLMSIVIMANEKFRERVEVWTVFEKLPDQYPAFFRHVLESCLPSKK AKEASSTLRERTALLMFINHCFNSMEIELCREQAKRLVSLSMWHCLQPRR REQELREVPEWRKYWKRLLKKEKDSKPEVLWERHFMQNLIIDFLHILESI PAEGEVPRNVVHYCERFLEFIIDLEALLPTRRFFNTVLDDCHLIVRALLS PLVRREEGKLFGQLLDMLKFYTRFEINDVTGSSLTDHDMTQLHYKKITSL QRAVFAKFPSLRVFALSNVATVDNRESLEQHFGGLDGKGLLQIATFLNLV PEEVVSPLDWHRVDEQFLRELLITRHERRCSQLEALNEMPLYPTEQIIWD ENVVPSEYYSGDSCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDI EDAVSRMLPWKSEDGDVVFGGWARMALPIASFAVVEVAKPHLGEKKPSRV RADVGVTLSVRREIKAEWENLRKHDVCFLITVKPTQPYGTKYKHREPFVP QVGLVSVRGCEVEGMLDANGRVIEDGPEPRPQLQGENRCYRVWLDSNQYR LDMDDLQEGADDVYESFNILMRRKPKENNFKAVLETIRHLMNTECVVPPW LHDILLGYGDPGAAHYSNMPNQERSLEFNDTFMDYNHLEASFPQYNLKCE VPVENRQPPFRLIFEDVPIQKESDGEDPEEKPEEKLTKSILVQPYKYEAR GPYPSDKPKQNSIRFTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQII SNIYHNHPNQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE TEKDYSRYGRVNYVLAKRMDLLSQVQKLQEALGVSGDNAYTCETAGYFYL YNVMARWEKFQSQISVHKGEADAEKLRAEFEKEFPFGKFFADAPQPLFKG ANYDELMDIACSNFRYISDIFNELEEFRAFELLRTGLDRSKYLLVKEAKI IAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDG LNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLD GQGRARASICSLYKWRYKKLEDLQHIFERDEYKQANPGFVHDYQLINVED FKGVGESEPNPYFYQNLAEAEYIVAVYMYMRLLGYPAAKISILTTYNGQK HLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNDYILISLVRTKAVGHL RDVRRLVVAMSRARLGLYVFGRVSLFKNCLELQQTFKLRPLKLSLVPEDK FPTDRLASAAVASQDIKTVENMSEMAQFVYERYMAKMEELKGTLPSEEEL EAMRNQLLQEDEESVPEASEEPPEKRAAKEEPLSKKKTTEAFKPTPILNE INVDDTEMGQREQIEEEATDQDKTQESAPAEESooo >C2 MKRRSQTRAEQAVPPAKTTKEKSGALTVAQLSSDVIWQLASQYWTPDTKA DHLPYSAKIIERIYNEEIGDGGGHSARRINMLEFSQYLEQYLWPHYQRET ATHAHLMSIVIMANEKFRERVEVWTVFEKLPDQYPPFFRHVLESCLPSKK AKEASSTLRERTALLMFINHCFNSMEIELCREQAKRLVSLSMWHCLQPRR REQELREVPEWRKYWKRLLKKEKDSKPEVLWERHFMQNLIIDFLHILESI PAEGEVPRNVVHYCERFLEFIIDLEALLPTRRFFNTVLDDCHLIVRALLS PLVRREEGKLFGQLLDMLKFYTRFEINDVTGSSLTDHDMTQLHYKKITSL QRAVFAKFPSLRVFALSNVATVDNRESLEQHFGGLDGKGLLQIATFLNLV PEEVVSPLDWHRVDEQFLRELLITRHERRCSQLEALNEMPLYPTEQIIWD ENVVPSEYYSGESCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDI EDAVSRMLPWKSEDGDVVFGGWARMALPIASFAVVEVAKPHLGEKKPSRV RADVGVTLSVRREIKAEWENLRKHDVCFLITVKPTQPYGTKYKHREPFVP QVGLVSVRGCEVEGMLDANGRVIEDGPEPRPQLQGENRCYRVWLDSNQYR LDMDDLQEGADDVYESFNILMRRKPKENNFKAVLETIRHLMNTECVVPPW LHDILLGYGDPGAAHYSNMPNQERSLEFNDTFLDYNHLEDSFPKYNLKCE VPEENRQPPFRLIFEDVPIQKESDGEDPEDNSEMELTKSILVQPYKYEAR GPYPSDKPKQNSIRFTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQII SNIYHNHPNQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE TEKDYSRYGRVNYVLAKRMDLLSQVQKLQEALGVSGDNAYTCETAGYFYL YNVMARWEKFQSQISVHKQEADVEKLRAEFEKEFPFGKFFADAPQPLFKS ANYDELMDTACSNFRYISDIFNELEEFRAFELLRTGLDRSKYLLVKEAKI IAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDG LNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLD GQGRARASICSLYKWRYKKLEDLQHIFERDEYKQANPGFVHDYQLINVED FKGVGESEPNPYFYQNLAEAEYIVAVYMYMRLLGYPAAKISILTTYNGQK HLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNNYILISLVRTKAVGHL RDVRRLVVAMSRARLGLYVFGRVSLFKNCLELQQTFKLRPLKLSLVPEDK YPTDRLASADVASQDIKTVENMSEMAQLVYERYMAKMEELKGTLPSEEEL EEMRNQLLQEDEEYVPEASEEPPEKRAAKEEPLSKKKTTEAFKPTPILNE INVDDTEMAQREQIEQEATATTTQDKTQESAPPEES >C3 MKRRSQTRAEQAVPPAKTIKEKSGALTVAQLSSDVIWQLASQYWTPDTKA DHLPYSAKIIERIYNEEIGDGGGHSARRINMLEFSQYLEQYLWPHYQRET ATHAHLMSIVIMANEKFRERVEVWTVFEKLPDQYPAFFRHVLESCLPSKK AKEASSTLRERTALLMFINHCFNSMEIELCREQAKRLVSLSMWHCLQPRR REQELREVPEWRKYWKRLLKKEKGSKPEVLWERHFMQNLIIDFLHILESI PAEGEVPRNVVHYCERFLEFIIDLEALLPTRRFFNTVLDDCHLIVRALLS PLVRREEGKLFGQLLDMLKFYTRFEINDVTGSSLTDHDMTQLHYKKITSL QRAVFAKFPSLRVFALSNVATVDNRESLEQHFGGLDGKGLLQIATFLNLV PEEVVSPLDWHRVDEQFLRELLITRHERRCSQLEALNEMPLYPTEQIIWD ENVVPSEYYSGESCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDI EDAVSRMLPWKSEDGDVVFGGWARMALPIASFAVVEVAKPHLGEKKPSRV RADVGVTLSVRREIKAEWENLRKHDVCFLITVKPTQPYGTKYKHREPFVP QVGLVSVRGCEVEGMLDANGRVIEDGPEPRPQLQGENRCYRVWLDSNQYR LDMDDLQEGADDVYESFNILMRRKPKENNFKAVLETIRHLMNTECVVPPW LHDILLGYGDPGAAHYSNMPNQERSLEFNDTFLDYNHLEASFPKYNLKCE VPEENRQPPFRLIFEDVPIQKESDGEDPEENSEMELTKSILVQPYKYEAR GPYPSDKPKQNSIRFTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQII SNIYHNHPNQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE TEKDYSRYGRVNYVLAKRMDLLSQVQKLQEALGVSGDNAYTCETAGYFYL YNVMARWEKFQSQISVHKQEADVEKLRAEFEKEFPFGKFFADAPQPLFKG ANYDELMDIACSNFRYISDIFNELEEFRAFELLRTGLDRSKYLLVKEAKI IAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDG LNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLD GQGRARASICSLYKWRYKKLEDLQHIFERDEYKQANPGFVHDYQLINVED FKGVGESEPNPYFYQNLAEAEYIVAVYTYMRLLGYPAAKISILTTYNGQK HLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNDYILISLVRTKAVGHL RDVRRLVVAMSRARLGLYVFGRVSLFKNCLELQQTFKLRPLKLSLVPEDK YPTDRLASADVSSQDIKTVENMSEMAQFVYERYMAKMKELKGTLPSEEEL EEMRNQLLQEDEEYVPEASQEPPEKRAAKEEPLSKKKTTEAFKPTPILNE INVDDTEMAQREQVEQEATATTTQDKTQESAPPEES >C4 MKRRSQTKAQQAAPPAKTTKEKSGSLTVAQLSSDVIWQLASQYWTPDTKA DHLPYSAKIIERIYKEEIGDGGAHSARRINMLEFSQYLEQYLWPHYQRET ATHAHLMSIVIMANEKFRERVEVWTVFEKLPDQYPAFFHHVLESCLPSKK AKEASSTLRERTALLMFINHCFNSMEIELCREQAKRLVSLSMWHCLQPRR REQELREVPEWRKYWKRLLKKEKDSKPEVLWERHFMQNLIIDFLHILESI PAEGAVASNVVHYCERFLEFIIDLEALLPTRRFFNTVLDDCHLIVRALLS PLVRREEGKLFGQLLDMLKFYTRFEINDVTGSSLTDHDMTQLHYKKITSL QRAVFAKFPSLRVFALSNVATVDNRESLEQHFGGLDGKGLLQIATFLNLV PEEVVSPLDWHRVDEQFLRELLITRHERRCSQLEALNEMPLYPTEQIIWD ENVVPSEYYSGESCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDI EDAVSRMLPWQSEDGDVVFGGWARMALPIASFAVVEVAKPHLGEKKPSRV RADVGVTLSVRREIKAEWENLRKHDVCFLITVKPTQPYGTKYKHREPFIP QVGLVSVRGCEVEGMLDANGRVIEDGPEPRPQLQGENRCYRVWLDSNQYR LDMDDLQERADDVYESFNILMRRKPKENNFKAVLETIRHLMNTECVVPPW LHDILLGYGDPGAAHYSNMPNQERSLEFNDTFLDFHHLKASFPNYNLKCE VPEENRQPPFRLIFEDVPIQTESDGEDHEEKPEEELAKSILVQPYKYEAR GPYPSDKPKQNSIRFTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQII SNIYHNHPNQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE TEKDYSRYGRVNYVLAKRMDLLSQVQKLQEALGVSGDNAYTCETAGYFYL YNVMARWEKFQSQIAVHKEDTDAEKLRAEFEREFPFGKFFADAPQPLFKG ASYEELMDIACSNFRYISDIFNELEEFRAFELLRTGLDRSKYLLVKEAKI IAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDG LNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLD GQGRARASICSLYKWRYKKLEDLQHIFERDEYKQANPGFAHDYQLINVED FKGVGESEPNPYFYQNLAEAEYIVAVYMYMRLLGYPAAKISILTTYNGQK HLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNDYILISLVRTKAVGHL RDVRRLVVAMSRARLGLYVFGRVSLFKNCLELQQTFKLRPLKLSLVPEDK YPTDRLASADVASQDIKTVDNMSEMAQFVYERYMAKMEELKGTLPSEEEL QAMRNQLPQEDGEIVPEEASEEPPEKRAAKEEPLSKKKTTEVFKPTPILN EINVDDTDMAEREQIQQEATDEDKTQESAPTEESoo >C5 MKRRSQTRAQQAVPPTKATKEKSGSLTVAQLSSDVIWQLASQYWTPDTKA DHLPYSAKIIERIYKEEIGDGGGHSARRINMLEFSQYLEQYLWPHYQRET ATHAHLMSIVIMANEKFRERVEVWTVFEKLPEQYPAFFRHVLESCLPSKK AKEASSTLRERTALLMFINHCFNSMEIELCREQAKRLVSLSMWHCLQPRR REQELREVPEWRKYWKRLLKKEKDSKPEVLWERHFMQNLIIDFLHILESI PAEGDVASNVVHYCERFLEFIIDLEALLPTRRFFNTVLDDCHLIVRALLS PLVRREEGKLFGQLLDMLKFYTRFEINDVTGSSLTDHDMTQLHYKKITSL QRAVFAKFPSLRVFALSNVATVDNRESLEQHFGGLDGKGLLQIATFLNLV PEEVVSPLDWHRVDEQFLRELLITRHERRCSQLEALNEMPLYPTEQIIWD ENVVPSEYYSGESCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDI EDAVSRMLPWQSEDGDVVFGGWARMALPIASFAVVEVAKPHLGEKKPSRV RADVGVTLSVRREIKAEWENLRKHDVCFLITVKPTQPYGTKYKHREPFIP QVGLVSVRGCEVEGMLDANGRVIEDGPEPRPQLQGENRCYRVWLDSNQYR LDMDDLQEGADDVYESFNILMRRKPKENNFKAVLETIRHLMNTECVVPPW LHDILLGYGDPGAAHYSNMPNQERSLEFNDTFLDYNHLEASFPNYNLKCE VPEENRQPPFRLIFEDVPIEKESDGEDHEETPEGELTKSILVQPYKYEAR GPYPSDKPKQNSIRFTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQII SNIYHNHPNQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE TEKDYSRYGRVNYVLAKRMDLLSQVQKLQEALGVSGDNAYTCETAGYFYL YNVMARWEKFQSQICVHEEETDAGKLRAEFEKEFPFGKFFADAPQPLFKG ANYDELMDIACSNFRYISDIFNELEEFRAFELLRTGLDRSKYLLVKEAKI IAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDG LNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLD GQGRARASICSLYKWRYKKLEDLQHIFERDEYKQANPGFVHDYQLINVED FKGVGESEPNPYFYQNLAEAEYIVAVYMYMRLLGYPAAKISILTTYNGQK HLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNDYILISLVRTKAVGHL RDVRRLVVAMSRARLGLYVFGRVSLFKNCLELQQTFKLRPLKLSLVPEDK YPTDRLASADVASQDMRTVENMSEMAQFVYERYMAKMEELKDTLPSEEEL QAMRNQLPQEDEEDVPEEASEEPPEKRAAKEEPLSKKKTTEAFKPTPILN EINVDDTEMTQREEIQQEATDEDQTQESAPAEESoo >C6 MKRRSQTQAQQAAPAAKNAKEKAGALTVAQLNSDVIWQLASQYWTPDTKA DHKPYSAQIIERIYNEEIGGGGAHSARRINMLEFSQYLEQYLWPHYQRET ATHAHLMSIVIMANEKFKERVEVWSVFEKLPDQYPAFFRHVLESCLPGKK AKEASSSLRERTALLMFINHCFNSMEIELCREQAKRLVSLSMWHCLQPRR REQELREVPEWRKYWKRLLKKEKDSKPEVVWERHFMQNLIIDFLHILESI PAEGEVASNVVHYCERFLEFIIDLEALLPTRRFFNTVLDDCHLIVRALLS PLVRREEGKLFGQLLDMLKFYTRFEINDVTGSSLTDHDMTQLHYKKITSL QRAVFAKFPSLRVFALSNVATVDNRESLEQHFGGLDGKGLLQIATFLNLV PEEVAAPLDWHRVDEQFLRELLITRHERRCSQLEALNEMPLYPTEQIIWD ENVVPSEYYSGDSCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDI EDAVSRMLPWQSEDGDVVFGGWARMALPIASFAVVEVAKPHLGEKKPSRV RADVGVTLSVRREIKAEWENLRKHDVCFLITVKPTQPYGTKYNHREPFIP QVGLVSVRGCEVEGMLDANGRVIEDGPEPRPQLPGEQRCYRVWLDSNQYR QDMDDLQEGADDVYESFNILMRRKPKENNFKAVLETIRHLMNTECVVPPW LHDILLGYGDPGAAHYSNMSNQERSLEFNDTFLDYKHLEASFPNYTLKCE VPEEKRQPPYRLIFKDVPIHKDSDEEEGEEKVEQELSKTIEVQPYKYEAR GPYPSDKPKQNSIRFTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQII SNIYHNHPSQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE TEKDYSRYGRVNYVLAKRVDLLSQVQKLQESLGVSGDNAYTCETAGYFYL YNVMARWEKFQSQMRAHRDETDVEKLRAVFEKDFPFAKFFADAPQPLFKG ANYEELMDVACSNFRYISDIFNELEEFRAFELLRTGLDRSKYLLVKEAKI IAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDG LNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLD GQGRARASICSLYKWRYKKLEDLQHIFERDEYKKANPGFAHDYQLINVED FKGVGESEPNPYFYQNLAEAEYIVAVYTYMRLLGYPAAKISILTTYNGQK HLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNDYILISLVRTKVVGHL RDVRRLVVAMSRARLGLYVFGRVSLFKNCLELQQTFKLRPLKLSLVPDDK YPTERLASADVATESIKVVENMSEMAQFVYERYMAKMEELKGTLPTEEEL LAMRSQLPQEDDDVVPEEASEEPPEKRAAKEVPVSKKKTTEAFKPTPILN EISVDEAEMDQREETVKETTEEPAQVPTPAEESooo >C7 MKRRSQTQAQQAAPASKNAKEKAGALTVAQLNSDVIWQLASQYWTPDTKA DHLPYSAKIIERIYNEEIGGGGGHSARRINMLEFSQYLEQYLWPHYQRET ATHAHLMSIVIMANEKFKERVEVWTVFEKLPDQYPAFFRHVLESCLPGKK AKEASSSLRERTALLMFINHCFNSMEIELCREQAKRLVSLSMWHCLQPRR REQELRDVPEWRKYWKRLLKKEKDSNPEVVWERHFMQNLIIDFLHILESI PAEGEVSSNLVHYCERFLEFIIDLEALLPTRRFFNTVLDDCHLIVRALLS PLVRREEGKLFGQLLDMLKFYTRFEINDVTGSSLTDHDMTQLHYKKITSL QRAVFAKFPSLRVFALSNVATVDNRESLEQHFGGLDGKGLLQIATFLNLV PEEVAAPLDWHRVDEQFLRELLITRHERRCSQLEALNEMPLYPTEQIIWD ENVVPSEYYSGDSCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDI EDAVSRMLPWQSEDGDVVFGGWARMALPIASFAVVEVAKPHLGEKKPSRV RADVGVTLSVRREIKAEWENLRKHDVCFLITVKPTQPYGTKYKHREPFIP QVGLVSVRGCEVEGMLDANGRVIEDGPEPRPQLPGEQRCYRVWLDSNQYR QDMDDLQEGADDVYESFNILMRRKPKENNFKAVLETIRHLMNTECVVPPW LHDILLGYGDPGAAHYSNMSNQERSLEFNDTFLDYKHLEASFPNYKLKCE VPEEKRQPPYRLIFEDVPIHKDSDEEEGEEKVEQELLKVISVQPYKYEAR GPYPSDKPKQNSIRFTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQII SNIYHNHPSQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE TEKDYSRYGRVNYVLAKRVDLLSQVQKLQESLGVSGDNAYTCETAGYFYL YNVMARWEKFQSQMSVHREETDVEKLRALFEKDFPFGKFFADAPQPLFKG GNYEELMDAACSNFRYISDIFNELEEFRAFELLRTGLDRSKYLLVKEAKI IAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDG LNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLD GQGRARASICSLYKWRYKKLEDLQHIFERDEYKKANPGFAHDYQLINVED FKGVGESEPNPYFYQNLAEAEYIVAVYTYMRLMGYPAAKISILTTYNGQK HLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNDYILISLVRTKVVGHL RDVRRLVVAMSRARLGLYVFGRVSLFKNCLELQQTFKLRPLKLSLVPDDK YPTDRLANADVARDAIKVVENMSEMAQFVYERYMAKMEELKGTLPTEEEL QAMRNQLPQEDEDNVPEEASEEPPEKRVAKEAPLSKKKTAEAFKPTPILN EISVDEVEMDQKEEVEKETTEEPTKVPTPAEESooo CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=7, Len=1490 C1 MKRRSQTRAEQAVPPAKTTKENSGSLTVSQLSSDVIWQLASQYWTPDTKA C2 MKRRSQTRAEQAVPPAKTTKEKSGALTVAQLSSDVIWQLASQYWTPDTKA C3 MKRRSQTRAEQAVPPAKTIKEKSGALTVAQLSSDVIWQLASQYWTPDTKA C4 MKRRSQTKAQQAAPPAKTTKEKSGSLTVAQLSSDVIWQLASQYWTPDTKA C5 MKRRSQTRAQQAVPPTKATKEKSGSLTVAQLSSDVIWQLASQYWTPDTKA C6 MKRRSQTQAQQAAPAAKNAKEKAGALTVAQLNSDVIWQLASQYWTPDTKA C7 MKRRSQTQAQQAAPASKNAKEKAGALTVAQLNSDVIWQLASQYWTPDTKA *******:*:**.*.:* **::*:***:**.****************** C1 DHLPYSAKIIERIYNEEIGDGGGHSARRINMLEFSQYLEQYLWPHYQRET C2 DHLPYSAKIIERIYNEEIGDGGGHSARRINMLEFSQYLEQYLWPHYQRET C3 DHLPYSAKIIERIYNEEIGDGGGHSARRINMLEFSQYLEQYLWPHYQRET C4 DHLPYSAKIIERIYKEEIGDGGAHSARRINMLEFSQYLEQYLWPHYQRET C5 DHLPYSAKIIERIYKEEIGDGGGHSARRINMLEFSQYLEQYLWPHYQRET C6 DHKPYSAQIIERIYNEEIGGGGAHSARRINMLEFSQYLEQYLWPHYQRET C7 DHLPYSAKIIERIYNEEIGGGGGHSARRINMLEFSQYLEQYLWPHYQRET ** ****:******:****.**.*************************** C1 ATHAHLMSIVIMANEKFRERVEVWTVFEKLPDQYPAFFRHVLESCLPSKK C2 ATHAHLMSIVIMANEKFRERVEVWTVFEKLPDQYPPFFRHVLESCLPSKK C3 ATHAHLMSIVIMANEKFRERVEVWTVFEKLPDQYPAFFRHVLESCLPSKK C4 ATHAHLMSIVIMANEKFRERVEVWTVFEKLPDQYPAFFHHVLESCLPSKK C5 ATHAHLMSIVIMANEKFRERVEVWTVFEKLPEQYPAFFRHVLESCLPSKK C6 ATHAHLMSIVIMANEKFKERVEVWSVFEKLPDQYPAFFRHVLESCLPGKK C7 ATHAHLMSIVIMANEKFKERVEVWTVFEKLPDQYPAFFRHVLESCLPGKK *****************:******:******:***.**:********.** C1 AKEASSTLRERTALLMFINHCFNSMEIELCREQAKRLVSLSMWHCLQPRR C2 AKEASSTLRERTALLMFINHCFNSMEIELCREQAKRLVSLSMWHCLQPRR C3 AKEASSTLRERTALLMFINHCFNSMEIELCREQAKRLVSLSMWHCLQPRR C4 AKEASSTLRERTALLMFINHCFNSMEIELCREQAKRLVSLSMWHCLQPRR C5 AKEASSTLRERTALLMFINHCFNSMEIELCREQAKRLVSLSMWHCLQPRR C6 AKEASSSLRERTALLMFINHCFNSMEIELCREQAKRLVSLSMWHCLQPRR C7 AKEASSSLRERTALLMFINHCFNSMEIELCREQAKRLVSLSMWHCLQPRR ******:******************************************* C1 REQELREVPEWRKYWKRLLKKEKDSKPEVLWERHFMQNLIIDFLHILESI C2 REQELREVPEWRKYWKRLLKKEKDSKPEVLWERHFMQNLIIDFLHILESI C3 REQELREVPEWRKYWKRLLKKEKGSKPEVLWERHFMQNLIIDFLHILESI C4 REQELREVPEWRKYWKRLLKKEKDSKPEVLWERHFMQNLIIDFLHILESI C5 REQELREVPEWRKYWKRLLKKEKDSKPEVLWERHFMQNLIIDFLHILESI C6 REQELREVPEWRKYWKRLLKKEKDSKPEVVWERHFMQNLIIDFLHILESI C7 REQELRDVPEWRKYWKRLLKKEKDSNPEVVWERHFMQNLIIDFLHILESI ******:****************.*:***:******************** C1 PAEGEVPRNVVHYCERFLEFIIDLEALLPTRRFFNTVLDDCHLIVRALLS C2 PAEGEVPRNVVHYCERFLEFIIDLEALLPTRRFFNTVLDDCHLIVRALLS C3 PAEGEVPRNVVHYCERFLEFIIDLEALLPTRRFFNTVLDDCHLIVRALLS C4 PAEGAVASNVVHYCERFLEFIIDLEALLPTRRFFNTVLDDCHLIVRALLS C5 PAEGDVASNVVHYCERFLEFIIDLEALLPTRRFFNTVLDDCHLIVRALLS C6 PAEGEVASNVVHYCERFLEFIIDLEALLPTRRFFNTVLDDCHLIVRALLS C7 PAEGEVSSNLVHYCERFLEFIIDLEALLPTRRFFNTVLDDCHLIVRALLS **** *. *:**************************************** C1 PLVRREEGKLFGQLLDMLKFYTRFEINDVTGSSLTDHDMTQLHYKKITSL C2 PLVRREEGKLFGQLLDMLKFYTRFEINDVTGSSLTDHDMTQLHYKKITSL C3 PLVRREEGKLFGQLLDMLKFYTRFEINDVTGSSLTDHDMTQLHYKKITSL C4 PLVRREEGKLFGQLLDMLKFYTRFEINDVTGSSLTDHDMTQLHYKKITSL C5 PLVRREEGKLFGQLLDMLKFYTRFEINDVTGSSLTDHDMTQLHYKKITSL C6 PLVRREEGKLFGQLLDMLKFYTRFEINDVTGSSLTDHDMTQLHYKKITSL C7 PLVRREEGKLFGQLLDMLKFYTRFEINDVTGSSLTDHDMTQLHYKKITSL ************************************************** C1 QRAVFAKFPSLRVFALSNVATVDNRESLEQHFGGLDGKGLLQIATFLNLV C2 QRAVFAKFPSLRVFALSNVATVDNRESLEQHFGGLDGKGLLQIATFLNLV C3 QRAVFAKFPSLRVFALSNVATVDNRESLEQHFGGLDGKGLLQIATFLNLV C4 QRAVFAKFPSLRVFALSNVATVDNRESLEQHFGGLDGKGLLQIATFLNLV C5 QRAVFAKFPSLRVFALSNVATVDNRESLEQHFGGLDGKGLLQIATFLNLV C6 QRAVFAKFPSLRVFALSNVATVDNRESLEQHFGGLDGKGLLQIATFLNLV C7 QRAVFAKFPSLRVFALSNVATVDNRESLEQHFGGLDGKGLLQIATFLNLV ************************************************** C1 PEEVVSPLDWHRVDEQFLRELLITRHERRCSQLEALNEMPLYPTEQIIWD C2 PEEVVSPLDWHRVDEQFLRELLITRHERRCSQLEALNEMPLYPTEQIIWD C3 PEEVVSPLDWHRVDEQFLRELLITRHERRCSQLEALNEMPLYPTEQIIWD C4 PEEVVSPLDWHRVDEQFLRELLITRHERRCSQLEALNEMPLYPTEQIIWD C5 PEEVVSPLDWHRVDEQFLRELLITRHERRCSQLEALNEMPLYPTEQIIWD C6 PEEVAAPLDWHRVDEQFLRELLITRHERRCSQLEALNEMPLYPTEQIIWD C7 PEEVAAPLDWHRVDEQFLRELLITRHERRCSQLEALNEMPLYPTEQIIWD ****.:******************************************** C1 ENVVPSEYYSGDSCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDI C2 ENVVPSEYYSGESCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDI C3 ENVVPSEYYSGESCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDI C4 ENVVPSEYYSGESCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDI C5 ENVVPSEYYSGESCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDI C6 ENVVPSEYYSGDSCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDI C7 ENVVPSEYYSGDSCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDI ***********:************************************** C1 EDAVSRMLPWKSEDGDVVFGGWARMALPIASFAVVEVAKPHLGEKKPSRV C2 EDAVSRMLPWKSEDGDVVFGGWARMALPIASFAVVEVAKPHLGEKKPSRV C3 EDAVSRMLPWKSEDGDVVFGGWARMALPIASFAVVEVAKPHLGEKKPSRV C4 EDAVSRMLPWQSEDGDVVFGGWARMALPIASFAVVEVAKPHLGEKKPSRV C5 EDAVSRMLPWQSEDGDVVFGGWARMALPIASFAVVEVAKPHLGEKKPSRV C6 EDAVSRMLPWQSEDGDVVFGGWARMALPIASFAVVEVAKPHLGEKKPSRV C7 EDAVSRMLPWQSEDGDVVFGGWARMALPIASFAVVEVAKPHLGEKKPSRV **********:*************************************** C1 RADVGVTLSVRREIKAEWENLRKHDVCFLITVKPTQPYGTKYKHREPFVP C2 RADVGVTLSVRREIKAEWENLRKHDVCFLITVKPTQPYGTKYKHREPFVP C3 RADVGVTLSVRREIKAEWENLRKHDVCFLITVKPTQPYGTKYKHREPFVP C4 RADVGVTLSVRREIKAEWENLRKHDVCFLITVKPTQPYGTKYKHREPFIP C5 RADVGVTLSVRREIKAEWENLRKHDVCFLITVKPTQPYGTKYKHREPFIP C6 RADVGVTLSVRREIKAEWENLRKHDVCFLITVKPTQPYGTKYNHREPFIP C7 RADVGVTLSVRREIKAEWENLRKHDVCFLITVKPTQPYGTKYKHREPFIP ******************************************:*****:* C1 QVGLVSVRGCEVEGMLDANGRVIEDGPEPRPQLQGENRCYRVWLDSNQYR C2 QVGLVSVRGCEVEGMLDANGRVIEDGPEPRPQLQGENRCYRVWLDSNQYR C3 QVGLVSVRGCEVEGMLDANGRVIEDGPEPRPQLQGENRCYRVWLDSNQYR C4 QVGLVSVRGCEVEGMLDANGRVIEDGPEPRPQLQGENRCYRVWLDSNQYR C5 QVGLVSVRGCEVEGMLDANGRVIEDGPEPRPQLQGENRCYRVWLDSNQYR C6 QVGLVSVRGCEVEGMLDANGRVIEDGPEPRPQLPGEQRCYRVWLDSNQYR C7 QVGLVSVRGCEVEGMLDANGRVIEDGPEPRPQLPGEQRCYRVWLDSNQYR ********************************* **:************* C1 LDMDDLQEGADDVYESFNILMRRKPKENNFKAVLETIRHLMNTECVVPPW C2 LDMDDLQEGADDVYESFNILMRRKPKENNFKAVLETIRHLMNTECVVPPW C3 LDMDDLQEGADDVYESFNILMRRKPKENNFKAVLETIRHLMNTECVVPPW C4 LDMDDLQERADDVYESFNILMRRKPKENNFKAVLETIRHLMNTECVVPPW C5 LDMDDLQEGADDVYESFNILMRRKPKENNFKAVLETIRHLMNTECVVPPW C6 QDMDDLQEGADDVYESFNILMRRKPKENNFKAVLETIRHLMNTECVVPPW C7 QDMDDLQEGADDVYESFNILMRRKPKENNFKAVLETIRHLMNTECVVPPW ******* ***************************************** C1 LHDILLGYGDPGAAHYSNMPNQERSLEFNDTFMDYNHLEASFPQYNLKCE C2 LHDILLGYGDPGAAHYSNMPNQERSLEFNDTFLDYNHLEDSFPKYNLKCE C3 LHDILLGYGDPGAAHYSNMPNQERSLEFNDTFLDYNHLEASFPKYNLKCE C4 LHDILLGYGDPGAAHYSNMPNQERSLEFNDTFLDFHHLKASFPNYNLKCE C5 LHDILLGYGDPGAAHYSNMPNQERSLEFNDTFLDYNHLEASFPNYNLKCE C6 LHDILLGYGDPGAAHYSNMSNQERSLEFNDTFLDYKHLEASFPNYTLKCE C7 LHDILLGYGDPGAAHYSNMSNQERSLEFNDTFLDYKHLEASFPNYKLKCE *******************.************:*::**: ***:*.**** C1 VPVENRQPPFRLIFEDVPIQKESDGEDPEEKPEEKLTKSILVQPYKYEAR C2 VPEENRQPPFRLIFEDVPIQKESDGEDPEDNSEMELTKSILVQPYKYEAR C3 VPEENRQPPFRLIFEDVPIQKESDGEDPEENSEMELTKSILVQPYKYEAR C4 VPEENRQPPFRLIFEDVPIQTESDGEDHEEKPEEELAKSILVQPYKYEAR C5 VPEENRQPPFRLIFEDVPIEKESDGEDHEETPEGELTKSILVQPYKYEAR C6 VPEEKRQPPYRLIFKDVPIHKDSDEEEGEEKVEQELSKTIEVQPYKYEAR C7 VPEEKRQPPYRLIFEDVPIHKDSDEEEGEEKVEQELLKVISVQPYKYEAR ** *:****:****:****..:** *: *:. * :* * * ********* C1 GPYPSDKPKQNSIRFTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQII C2 GPYPSDKPKQNSIRFTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQII C3 GPYPSDKPKQNSIRFTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQII C4 GPYPSDKPKQNSIRFTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQII C5 GPYPSDKPKQNSIRFTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQII C6 GPYPSDKPKQNSIRFTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQII C7 GPYPSDKPKQNSIRFTPTQVEAIRAGMQPGLTLVVGPPGTGKTDVAVQII ************************************************** C1 SNIYHNHPNQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE C2 SNIYHNHPNQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE C3 SNIYHNHPNQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE C4 SNIYHNHPNQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE C5 SNIYHNHPNQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE C6 SNIYHNHPSQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE C7 SNIYHNHPSQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE ********.***************************************** C1 TEKDYSRYGRVNYVLAKRMDLLSQVQKLQEALGVSGDNAYTCETAGYFYL C2 TEKDYSRYGRVNYVLAKRMDLLSQVQKLQEALGVSGDNAYTCETAGYFYL C3 TEKDYSRYGRVNYVLAKRMDLLSQVQKLQEALGVSGDNAYTCETAGYFYL C4 TEKDYSRYGRVNYVLAKRMDLLSQVQKLQEALGVSGDNAYTCETAGYFYL C5 TEKDYSRYGRVNYVLAKRMDLLSQVQKLQEALGVSGDNAYTCETAGYFYL C6 TEKDYSRYGRVNYVLAKRVDLLSQVQKLQESLGVSGDNAYTCETAGYFYL C7 TEKDYSRYGRVNYVLAKRVDLLSQVQKLQESLGVSGDNAYTCETAGYFYL ******************:***********:******************* C1 YNVMARWEKFQSQISVHKGEADAEKLRAEFEKEFPFGKFFADAPQPLFKG C2 YNVMARWEKFQSQISVHKQEADVEKLRAEFEKEFPFGKFFADAPQPLFKS C3 YNVMARWEKFQSQISVHKQEADVEKLRAEFEKEFPFGKFFADAPQPLFKG C4 YNVMARWEKFQSQIAVHKEDTDAEKLRAEFEREFPFGKFFADAPQPLFKG C5 YNVMARWEKFQSQICVHEEETDAGKLRAEFEKEFPFGKFFADAPQPLFKG C6 YNVMARWEKFQSQMRAHRDETDVEKLRAVFEKDFPFAKFFADAPQPLFKG C7 YNVMARWEKFQSQMSVHREETDVEKLRALFEKDFPFGKFFADAPQPLFKG *************: .*. ::*. **** **::***.************. C1 ANYDELMDIACSNFRYISDIFNELEEFRAFELLRTGLDRSKYLLVKEAKI C2 ANYDELMDTACSNFRYISDIFNELEEFRAFELLRTGLDRSKYLLVKEAKI C3 ANYDELMDIACSNFRYISDIFNELEEFRAFELLRTGLDRSKYLLVKEAKI C4 ASYEELMDIACSNFRYISDIFNELEEFRAFELLRTGLDRSKYLLVKEAKI C5 ANYDELMDIACSNFRYISDIFNELEEFRAFELLRTGLDRSKYLLVKEAKI C6 ANYEELMDVACSNFRYISDIFNELEEFRAFELLRTGLDRSKYLLVKEAKI C7 GNYEELMDAACSNFRYISDIFNELEEFRAFELLRTGLDRSKYLLVKEAKI ..*:**** ***************************************** C1 IAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDG C2 IAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDG C3 IAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDG C4 IAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDG C5 IAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDG C6 IAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDG C7 IAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDG ************************************************** C1 LNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLD C2 LNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLD C3 LNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLD C4 LNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLD C5 LNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLD C6 LNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLD C7 LNRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLD ************************************************** C1 GQGRARASICSLYKWRYKKLEDLQHIFERDEYKQANPGFVHDYQLINVED C2 GQGRARASICSLYKWRYKKLEDLQHIFERDEYKQANPGFVHDYQLINVED C3 GQGRARASICSLYKWRYKKLEDLQHIFERDEYKQANPGFVHDYQLINVED C4 GQGRARASICSLYKWRYKKLEDLQHIFERDEYKQANPGFAHDYQLINVED C5 GQGRARASICSLYKWRYKKLEDLQHIFERDEYKQANPGFVHDYQLINVED C6 GQGRARASICSLYKWRYKKLEDLQHIFERDEYKKANPGFAHDYQLINVED C7 GQGRARASICSLYKWRYKKLEDLQHIFERDEYKKANPGFAHDYQLINVED *********************************:*****.********** C1 FKGVGESEPNPYFYQNLAEAEYIVAVYMYMRLLGYPAAKISILTTYNGQK C2 FKGVGESEPNPYFYQNLAEAEYIVAVYMYMRLLGYPAAKISILTTYNGQK C3 FKGVGESEPNPYFYQNLAEAEYIVAVYTYMRLLGYPAAKISILTTYNGQK C4 FKGVGESEPNPYFYQNLAEAEYIVAVYMYMRLLGYPAAKISILTTYNGQK C5 FKGVGESEPNPYFYQNLAEAEYIVAVYMYMRLLGYPAAKISILTTYNGQK C6 FKGVGESEPNPYFYQNLAEAEYIVAVYTYMRLLGYPAAKISILTTYNGQK C7 FKGVGESEPNPYFYQNLAEAEYIVAVYTYMRLMGYPAAKISILTTYNGQK *************************** ****:***************** C1 HLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNDYILISLVRTKAVGHL C2 HLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNNYILISLVRTKAVGHL C3 HLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNDYILISLVRTKAVGHL C4 HLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNDYILISLVRTKAVGHL C5 HLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNDYILISLVRTKAVGHL C6 HLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNDYILISLVRTKVVGHL C7 HLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNDYILISLVRTKVVGHL **********************************:**********.**** C1 RDVRRLVVAMSRARLGLYVFGRVSLFKNCLELQQTFKLRPLKLSLVPEDK C2 RDVRRLVVAMSRARLGLYVFGRVSLFKNCLELQQTFKLRPLKLSLVPEDK C3 RDVRRLVVAMSRARLGLYVFGRVSLFKNCLELQQTFKLRPLKLSLVPEDK C4 RDVRRLVVAMSRARLGLYVFGRVSLFKNCLELQQTFKLRPLKLSLVPEDK C5 RDVRRLVVAMSRARLGLYVFGRVSLFKNCLELQQTFKLRPLKLSLVPEDK C6 RDVRRLVVAMSRARLGLYVFGRVSLFKNCLELQQTFKLRPLKLSLVPDDK C7 RDVRRLVVAMSRARLGLYVFGRVSLFKNCLELQQTFKLRPLKLSLVPDDK ***********************************************:** C1 FPTDRLASAAVASQDIKTVENMSEMAQFVYERYMAKMEELKGTLPSEEEL C2 YPTDRLASADVASQDIKTVENMSEMAQLVYERYMAKMEELKGTLPSEEEL C3 YPTDRLASADVSSQDIKTVENMSEMAQFVYERYMAKMKELKGTLPSEEEL C4 YPTDRLASADVASQDIKTVDNMSEMAQFVYERYMAKMEELKGTLPSEEEL C5 YPTDRLASADVASQDMRTVENMSEMAQFVYERYMAKMEELKDTLPSEEEL C6 YPTERLASADVATESIKVVENMSEMAQFVYERYMAKMEELKGTLPTEEEL C7 YPTDRLANADVARDAIKVVENMSEMAQFVYERYMAKMEELKGTLPTEEEL :**:***.* *: : ::.*:*******:*********:***.***:**** C1 EAMRNQLLQEDEESVP-EASEEPPEKRAAKEEPLSKKKTTEAFKPTPILN C2 EEMRNQLLQEDEEYVP-EASEEPPEKRAAKEEPLSKKKTTEAFKPTPILN C3 EEMRNQLLQEDEEYVP-EASQEPPEKRAAKEEPLSKKKTTEAFKPTPILN C4 QAMRNQLPQEDGEIVPEEASEEPPEKRAAKEEPLSKKKTTEVFKPTPILN C5 QAMRNQLPQEDEEDVPEEASEEPPEKRAAKEEPLSKKKTTEAFKPTPILN C6 LAMRSQLPQEDDDVVPEEASEEPPEKRAAKEVPVSKKKTTEAFKPTPILN C7 QAMRNQLPQEDEDNVPEEASEEPPEKRVAKEAPLSKKKTAEAFKPTPILN **.** *** : ** ***:******.*** *:*****:*.******** C1 EINVDDTEMGQREQIEEEATD---QDKTQESAPAEESooo C2 EINVDDTEMAQREQIEQEATATTTQDKTQESAPPEES--- C3 EINVDDTEMAQREQVEQEATATTTQDKTQESAPPEES--- C4 EINVDDTDMAEREQIQQEATD---EDKTQESAPTEESoo- C5 EINVDDTEMTQREEIQQEATD---EDQTQESAPAEESoo- C6 EISVDEAEMDQREETVKETTE----EPAQVPTPAEESooo C7 EISVDEVEMDQKEEVEKETTE----EPTKVPTPAEESooo **.**:.:* ::*: :*:* : :: .:*.*** PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [63542] Library Relaxation: Multi_proc [72] plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [63542] Library Relaxation: Multi_proc [72] plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [63542] Library Relaxation: Multi_proc [72] plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [63542] Library Relaxation: Multi_proc [72] plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [63542] Library Relaxation: Multi_proc [72] plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [63542] Library Relaxation: Multi_proc [72] plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1486 type PROTEIN Struct Unchecked Input File /opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1486 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/111/CG31368-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [63542] Library Relaxation: Multi_proc [72] plugins