--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -4059.59 -4082.26
2 -4060.52 -4082.39
--------------------------------------
TOTAL -4059.95 -4082.33
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.960602 0.007811 0.792385 1.137121 0.952958 926.70 1081.49 1.000
r(A<->C){all} 0.094895 0.000514 0.050050 0.136239 0.093599 853.85 867.14 1.000
r(A<->G){all} 0.243614 0.000778 0.192406 0.301975 0.242388 803.17 989.25 1.002
r(A<->T){all} 0.074763 0.000197 0.050808 0.104558 0.074004 1115.77 1165.61 1.000
r(C<->G){all} 0.110207 0.000535 0.067374 0.156350 0.108718 687.95 774.38 1.000
r(C<->T){all} 0.405297 0.001036 0.343873 0.470783 0.405172 780.61 833.83 1.000
r(G<->T){all} 0.071223 0.000206 0.044967 0.100101 0.070492 1136.62 1206.31 1.000
pi(A){all} 0.251114 0.000116 0.231695 0.273109 0.251028 1039.61 1087.09 1.000
pi(C){all} 0.185638 0.000085 0.168074 0.203668 0.185686 1045.73 1171.41 1.001
pi(G){all} 0.217639 0.000106 0.197029 0.237841 0.217456 1090.43 1113.08 1.000
pi(T){all} 0.345608 0.000137 0.322877 0.368387 0.345575 1045.13 1103.29 1.000
alpha{1,2} 0.235626 0.001746 0.164660 0.325512 0.231239 1067.27 1193.31 1.000
alpha{3} 3.232228 1.666248 1.283614 5.837711 2.956414 1225.80 1252.38 1.000
pinvar{all} 0.086540 0.003210 0.000105 0.190028 0.079067 1135.83 1235.34 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
-- Starting log on Wed Nov 02 20:10:40 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.09 sec, SCORE=1000, Nseq=15, Len=443
C1 MGRMCIAMAPRTLLLLIGCQLVFGFNEPINIVSHLNDDWFLFGDSRSDCT
C2 MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCT
C3 --------------------------------------------------
C4 --------------------------------------------------
C5 --------------------------------------------------
C6 --------------------------------------------------
C7 --------------------------------------------------
C8 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C9 MACTD-AMAPRTLLLVLSLGYALGFNEPLNVVSHLNDDWFLFGDSRSDCN
C10 MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C11 MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCT
C12 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C13 MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIFSHLNDDWFLFGDSRSDCT
C14 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C15 MGSTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C1 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C2 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C3 --------------------------------------------------
C4 --------------------------------------------------
C5 --------------------------------------------------
C6 --------------------------------------------------
C7 --------------------------------------------------
C8 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C9 HINNLSHQNYNYMDLNPELCKSGKISAKAGNSLFKSFHFTDFYNYTGEGS
C10 YVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGD
C11 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C12 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C13 YVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGD
C14 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C15 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C1 QIIFYEGVNFSPSHGFKCLVEGDNNKWMGNKARFYALLYKKMAQYRSLSF
C2 QIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSF
C3 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C4 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C5 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C6 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C7 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C8 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C9 QIIFYEGVNFTPYVGFKCLNNGDNSRWMGNKARFYTQLYQKMAHYRSLSI
C10 QVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C11 QIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSF
C12 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C13 QVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C14 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C15 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKAAFYARVYEKMAQYRSLSF
***** **: :*:***:*****:
C1 VTVPYAYGGNAKPTSICKDK----TLTLNNPTFISKES--VDYYYVSEAN
C2 VIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEAN
C3 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C4 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C5 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C6 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C7 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C8 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C9 INITYTYNGSAGPVSMCKHTANGATLTLNNPTFIGKEASAPNYYYGSEAN
C10 VNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEAN
C11 VIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEAN
C12 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C13 VNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEAN
C14 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C15 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
: :.*:*.*.* *.*:**.. **********.**: :*** ****
C1 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNIDTGVLYGFN
C2 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C3 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C4 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C5 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C6 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C7 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C8 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C9 FTLHGCDEFIVPLCVFNGEYLSS-----KLYYDDSQYYYNMDTGVLYGFN
C10 FTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C11 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C12 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C13 FTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C14 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C15 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGLN
*** ********** ***. .* : ** *** ***:* *****:*
C1 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C2 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C3 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C4 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C5 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C6 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C7 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C8 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C9 STLNI-----TIGLDLTCIYLLLTPGNYKSISNELLLTMPSKAICLRKAK
C10 STLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C11 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C12 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C13 STLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C14 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C15 CTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
.**:: ****** ** *******::* * **::*******:*.*
C1 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C2 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C3 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C4 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C5 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C6 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C7 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C8 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C9 AFTPVQVVDSRWHSNRQSDNMTAIACQLPYCYFRNTTSDYNG-VYDSHHG
C10 SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C11 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C12 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C13 SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C14 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C15 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
* ********* * ******** *******:****:::*.* .:* ***
C1 DFYFRQLLSGLLYNVSCIAQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C2 DFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C3 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C4 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C5 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C6 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C7 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C8 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C9 DAGFTSVLAGLMYNVSCIAQQGAFVYNNVSSSWPQYPYGHCPTAANIGFI
C10 DFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYM
C11 DFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C12 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C13 DFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYM
C14 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C15 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
* * .:*:**: *****:*****:****** ** * **:********::
C1 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C2 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C3 APVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA
C4 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C5 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C6 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C7 APVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA
C8 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
C9 APVCMYDPLPVILLGVLLGIAVLIIVFLLFYFMTDSGVRLHEI
C10 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C11 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C12 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C13 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C14 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
C15 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
****:******:*********** ****::***:**.*****
-- Starting log on Wed Nov 02 20:12:37 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.14 sec, SCORE=995, Nseq=15, Len=443
C1 MGRMCIAMAPRTLLLLIGCQLVFGFNEPINIVSHLNDDWFLFGDSRSDCT
C2 MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCT
C3 --------------------------------------------------
C4 --------------------------------------------------
C5 --------------------------------------------------
C6 --------------------------------------------------
C7 --------------------------------------------------
C8 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C9 MACTD-AMAPRTLLLVLSLGYALGFNEPLNVVSHLNDDWFLFGDSRSDCN
C10 MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C11 MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCT
C12 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C13 MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIFSHLNDDWFLFGDSRSDCT
C14 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C15 MGSTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C1 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C2 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C3 --------------------------------------------------
C4 --------------------------------------------------
C5 --------------------------------------------------
C6 --------------------------------------------------
C7 --------------------------------------------------
C8 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C9 HINNLSHQNYNYMDLNPELCKSGKISAKAGNSLFKSFHFTDFYNYTGEGS
C10 YVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGD
C11 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C12 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C13 YVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGD
C14 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C15 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C1 QIIFYEGVNFSPSHGFKCLVEGDNNKWMGNKARFYALLYKKMAQYRSLSF
C2 QIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSF
C3 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C4 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C5 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C6 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C7 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C8 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C9 QIIFYEGVNFTPYVGFKCLNNGDNSRWMGNKARFYTQLYQKMAHYRSLSI
C10 QVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C11 QIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSF
C12 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C13 QVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C14 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C15 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKAAFYARVYEKMAQYRSLSF
***** **: :*:***:*****:
C1 VTVPYAYGGNAKPTSICKDK----TLTLNNPTFISKES--VDYYYVSEAN
C2 VIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEAN
C3 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C4 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C5 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C6 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C7 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C8 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C9 INITYTYNGSAGPVSMCKHTANGATLTLNNPTFIGKEASAPNYYYGSEAN
C10 VNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEAN
C11 VIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEAN
C12 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C13 VNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEAN
C14 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C15 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
: :.*:*.*.* *.*:**.. **********.**: :*** ****
C1 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNIDTGVLYGFN
C2 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C3 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C4 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C5 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C6 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C7 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C8 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C9 FTLHGCDEFIVPLCVFNGEYLSS-----KLYYDDSQYYYNMDTGVLYGFN
C10 FTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C11 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C12 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C13 FTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C14 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C15 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGLN
*** ********** ***. .* : ** *** ***:* *****:*
C1 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C2 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C3 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C4 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C5 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C6 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C7 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C8 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C9 STLNI-----TIGLDLTCIYLLLTPGNYKSISNELLLTMPSKAICLRKAK
C10 STLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C11 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C12 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C13 STLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C14 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C15 CTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
.**:: ****** ** *******::* * **::*******:*.*
C1 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C2 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C3 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C4 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C5 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C6 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C7 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C8 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C9 AFTPVQVVDSRWHSNRQSDNMTAIACQLPYCYFRNTTSDYNG-VYDSHHG
C10 SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C11 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C12 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C13 SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C14 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C15 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
* ********* * ******** *******:****:::*.* .:* ***
C1 DFYFRQLLSGLLYNVSCIAQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C2 DFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C3 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C4 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C5 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C6 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C7 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C8 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C9 DAGFTSVLAGLMYNVSCIAQQGAFVYNNVSSSWPQYPYGHCPTAANIGFI
C10 DFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYM
C11 DFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C12 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C13 DFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYM
C14 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C15 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
* * .:*:**: *****:*****:****** ** * **:********::
C1 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C2 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C3 APVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA
C4 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C5 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C6 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C7 APVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA
C8 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
C9 APVCMYDPLPVILLGVLLGIAVLIIVFLLFYFMTDSGVRLHEI
C10 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C11 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C12 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C13 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C14 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
C15 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
****:******:*********** ****::***:**.*****
-- Starting log on Wed Nov 02 20:10:40 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.09 sec, SCORE=1000, Nseq=15, Len=443
C1 MGRMCIAMAPRTLLLLIGCQLVFGFNEPINIVSHLNDDWFLFGDSRSDCT
C2 MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCT
C3 --------------------------------------------------
C4 --------------------------------------------------
C5 --------------------------------------------------
C6 --------------------------------------------------
C7 --------------------------------------------------
C8 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C9 MACTD-AMAPRTLLLVLSLGYALGFNEPLNVVSHLNDDWFLFGDSRSDCN
C10 MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C11 MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCT
C12 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C13 MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIFSHLNDDWFLFGDSRSDCT
C14 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C15 MGSTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C1 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C2 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C3 --------------------------------------------------
C4 --------------------------------------------------
C5 --------------------------------------------------
C6 --------------------------------------------------
C7 --------------------------------------------------
C8 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C9 HINNLSHQNYNYMDLNPELCKSGKISAKAGNSLFKSFHFTDFYNYTGEGS
C10 YVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGD
C11 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C12 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C13 YVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGD
C14 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C15 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C1 QIIFYEGVNFSPSHGFKCLVEGDNNKWMGNKARFYALLYKKMAQYRSLSF
C2 QIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSF
C3 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C4 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C5 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C6 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C7 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C8 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C9 QIIFYEGVNFTPYVGFKCLNNGDNSRWMGNKARFYTQLYQKMAHYRSLSI
C10 QVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C11 QIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSF
C12 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C13 QVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C14 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C15 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKAAFYARVYEKMAQYRSLSF
***** **: :*:***:*****:
C1 VTVPYAYGGNAKPTSICKDK----TLTLNNPTFISKES--VDYYYVSEAN
C2 VIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEAN
C3 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C4 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C5 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C6 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C7 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C8 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C9 INITYTYNGSAGPVSMCKHTANGATLTLNNPTFIGKEASAPNYYYGSEAN
C10 VNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEAN
C11 VIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEAN
C12 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C13 VNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEAN
C14 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C15 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
: :.*:*.*.* *.*:**.. **********.**: :*** ****
C1 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNIDTGVLYGFN
C2 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C3 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C4 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C5 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C6 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C7 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C8 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C9 FTLHGCDEFIVPLCVFNGEYLSS-----KLYYDDSQYYYNMDTGVLYGFN
C10 FTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C11 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C12 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C13 FTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C14 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C15 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGLN
*** ********** ***. .* : ** *** ***:* *****:*
C1 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C2 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C3 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C4 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C5 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C6 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C7 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C8 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C9 STLNI-----TIGLDLTCIYLLLTPGNYKSISNELLLTMPSKAICLRKAK
C10 STLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C11 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C12 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C13 STLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C14 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C15 CTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
.**:: ****** ** *******::* * **::*******:*.*
C1 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C2 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C3 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C4 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C5 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C6 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C7 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C8 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C9 AFTPVQVVDSRWHSNRQSDNMTAIACQLPYCYFRNTTSDYNG-VYDSHHG
C10 SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C11 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C12 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C13 SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C14 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C15 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
* ********* * ******** *******:****:::*.* .:* ***
C1 DFYFRQLLSGLLYNVSCIAQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C2 DFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C3 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C4 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C5 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C6 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C7 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C8 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C9 DAGFTSVLAGLMYNVSCIAQQGAFVYNNVSSSWPQYPYGHCPTAANIGFI
C10 DFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYM
C11 DFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C12 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C13 DFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYM
C14 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C15 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
* * .:*:**: *****:*****:****** ** * **:********::
C1 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C2 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C3 APVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA
C4 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C5 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C6 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C7 APVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA
C8 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
C9 APVCMYDPLPVILLGVLLGIAVLIIVFLLFYFMTDSGVRLHEI
C10 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C11 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C12 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C13 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C14 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
C15 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
****:******:*********** ****::***:**.*****
-- Starting log on Wed Nov 02 21:01:00 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result/gapped_alignment/fubar,A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 15 taxa and 1329 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C1
Taxon 2 -> C10
Taxon 3 -> C11
Taxon 4 -> C12
Taxon 5 -> C13
Taxon 6 -> C14
Taxon 7 -> C15
Taxon 8 -> C2
Taxon 9 -> C3
Taxon 10 -> C4
Taxon 11 -> C5
Taxon 12 -> C6
Taxon 13 -> C7
Taxon 14 -> C8
Taxon 15 -> C9
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1667422868
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 502311935
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 8943948122
Seed = 1500844206
Swapseed = 1667422868
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 73 unique site patterns
Division 2 has 64 unique site patterns
Division 3 has 133 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -6896.311289 -- 49.806583
Chain 2 -- -6445.692252 -- 49.806583
Chain 3 -- -6745.063659 -- 49.806583
Chain 4 -- -6962.794015 -- 49.806583
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -6963.881920 -- 49.806583
Chain 2 -- -7315.324007 -- 49.806583
Chain 3 -- -6804.125444 -- 49.806583
Chain 4 -- -7040.921376 -- 49.806583
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-6896.311] (-6445.692) (-6745.064) (-6962.794) * [-6963.882] (-7315.324) (-6804.125) (-7040.921)
1000 -- (-4203.210) (-4249.892) [-4184.284] (-4228.417) * [-4156.699] (-4198.288) (-4193.532) (-4170.721) -- 0:16:39
2000 -- (-4104.661) [-4106.004] (-4091.120) (-4100.517) * [-4070.222] (-4109.552) (-4111.457) (-4094.074) -- 0:08:19
3000 -- [-4073.566] (-4090.058) (-4077.601) (-4076.388) * [-4061.419] (-4081.502) (-4089.648) (-4077.362) -- 0:11:04
4000 -- (-4079.046) (-4080.464) [-4077.542] (-4067.360) * [-4074.352] (-4075.867) (-4081.693) (-4071.070) -- 0:12:27
5000 -- (-4084.226) (-4067.260) (-4069.448) [-4073.258] * (-4076.222) (-4077.938) [-4065.112] (-4081.530) -- 0:13:16
Average standard deviation of split frequencies: 0.098209
6000 -- (-4084.006) (-4069.929) [-4068.686] (-4071.647) * (-4082.599) (-4068.018) (-4072.417) [-4066.056] -- 0:13:48
7000 -- (-4074.104) [-4064.961] (-4063.977) (-4070.827) * (-4075.410) (-4069.522) [-4059.110] (-4073.732) -- 0:14:11
8000 -- (-4077.759) (-4071.433) [-4076.371] (-4074.410) * [-4077.750] (-4068.266) (-4067.678) (-4078.519) -- 0:14:28
9000 -- (-4071.872) [-4070.453] (-4076.826) (-4071.387) * (-4069.431) [-4061.026] (-4071.515) (-4091.428) -- 0:14:40
10000 -- (-4076.329) (-4071.146) (-4067.036) [-4059.339] * (-4073.453) (-4069.730) [-4067.560] (-4074.735) -- 0:14:51
Average standard deviation of split frequencies: 0.102104
11000 -- (-4074.468) [-4076.115] (-4073.379) (-4084.328) * [-4076.728] (-4067.470) (-4073.819) (-4078.629) -- 0:14:59
12000 -- [-4064.954] (-4069.311) (-4065.429) (-4062.613) * [-4069.277] (-4074.778) (-4078.729) (-4062.141) -- 0:15:05
13000 -- (-4071.745) [-4069.841] (-4087.077) (-4060.141) * (-4084.551) (-4069.543) (-4085.476) [-4070.589] -- 0:15:11
14000 -- [-4063.060] (-4085.410) (-4070.756) (-4070.209) * (-4078.867) (-4065.680) (-4075.903) [-4057.374] -- 0:15:15
15000 -- (-4066.509) (-4069.254) [-4064.317] (-4070.715) * (-4085.800) (-4067.986) (-4060.770) [-4081.858] -- 0:14:13
Average standard deviation of split frequencies: 0.068746
16000 -- (-4079.323) [-4073.462] (-4068.046) (-4071.716) * (-4076.359) (-4070.124) [-4064.344] (-4068.603) -- 0:14:21
17000 -- (-4069.248) [-4060.436] (-4068.183) (-4065.554) * (-4068.384) (-4067.165) [-4066.392] (-4077.296) -- 0:14:27
18000 -- (-4065.914) [-4069.319] (-4059.457) (-4057.217) * (-4083.584) (-4074.277) (-4077.491) [-4069.088] -- 0:14:32
19000 -- (-4062.454) (-4075.322) (-4082.874) [-4062.228] * (-4078.040) (-4080.768) (-4072.839) [-4073.595] -- 0:14:37
20000 -- (-4077.407) (-4075.658) [-4063.246] (-4074.236) * (-4061.697) [-4073.977] (-4067.903) (-4090.012) -- 0:14:42
Average standard deviation of split frequencies: 0.074816
21000 -- [-4067.454] (-4083.678) (-4071.927) (-4058.406) * (-4082.471) [-4075.120] (-4071.196) (-4074.994) -- 0:14:45
22000 -- (-4075.415) (-4057.930) (-4079.578) [-4069.473] * (-4068.588) (-4062.734) [-4063.792] (-4074.993) -- 0:14:49
23000 -- [-4068.605] (-4072.145) (-4062.212) (-4067.429) * [-4070.025] (-4067.894) (-4061.800) (-4073.043) -- 0:14:52
24000 -- (-4074.852) [-4066.990] (-4063.653) (-4069.300) * [-4067.032] (-4077.367) (-4069.381) (-4075.577) -- 0:14:54
25000 -- (-4068.097) (-4074.691) [-4069.193] (-4070.516) * (-4069.370) (-4079.481) [-4063.547] (-4070.046) -- 0:14:57
Average standard deviation of split frequencies: 0.047270
26000 -- (-4063.441) (-4066.165) [-4068.823] (-4067.128) * (-4072.520) (-4075.229) (-4075.943) [-4057.745] -- 0:14:59
27000 -- (-4068.322) [-4070.172] (-4071.889) (-4069.452) * (-4077.141) (-4067.898) [-4067.215] (-4076.941) -- 0:14:24
28000 -- (-4079.243) (-4071.668) [-4065.924] (-4065.134) * (-4076.115) [-4069.907] (-4075.323) (-4064.537) -- 0:14:27
29000 -- [-4080.536] (-4063.351) (-4074.068) (-4071.001) * (-4072.229) (-4074.879) [-4064.462] (-4070.094) -- 0:14:30
30000 -- [-4063.951] (-4067.042) (-4076.298) (-4064.125) * (-4078.274) (-4072.333) (-4086.560) [-4064.234] -- 0:14:33
Average standard deviation of split frequencies: 0.033109
31000 -- (-4065.846) (-4072.546) [-4053.896] (-4073.049) * (-4078.475) (-4066.714) [-4077.458] (-4073.235) -- 0:14:35
32000 -- (-4068.150) (-4078.055) [-4062.500] (-4064.874) * [-4066.412] (-4080.354) (-4064.107) (-4074.669) -- 0:14:37
33000 -- (-4064.443) (-4081.257) (-4069.966) [-4070.926] * (-4079.754) (-4064.916) (-4073.368) [-4070.837] -- 0:14:39
34000 -- (-4075.919) (-4069.430) [-4063.045] (-4077.622) * (-4083.365) (-4074.624) (-4073.751) [-4073.931] -- 0:14:40
35000 -- (-4077.237) (-4072.269) (-4073.316) [-4070.657] * (-4075.558) (-4071.811) [-4069.115] (-4077.344) -- 0:14:42
Average standard deviation of split frequencies: 0.038236
36000 -- [-4072.774] (-4067.654) (-4069.688) (-4077.292) * (-4068.940) (-4067.210) [-4059.833] (-4076.728) -- 0:14:43
37000 -- [-4067.894] (-4076.498) (-4081.611) (-4082.252) * (-4066.068) (-4074.702) [-4072.968] (-4069.343) -- 0:14:44
38000 -- [-4059.077] (-4079.947) (-4077.800) (-4064.649) * (-4093.411) (-4071.817) (-4072.067) [-4072.099] -- 0:14:46
39000 -- [-4069.653] (-4062.844) (-4071.211) (-4069.625) * (-4069.027) [-4074.901] (-4073.201) (-4069.505) -- 0:14:47
40000 -- (-4072.938) [-4065.161] (-4068.469) (-4076.478) * (-4069.933) (-4076.061) (-4071.451) [-4071.760] -- 0:14:48
Average standard deviation of split frequencies: 0.025116
41000 -- (-4077.055) [-4065.999] (-4073.233) (-4075.098) * (-4072.792) (-4062.355) (-4086.555) [-4065.144] -- 0:14:48
42000 -- (-4072.838) [-4064.506] (-4068.955) (-4070.218) * (-4069.469) [-4061.949] (-4069.006) (-4062.658) -- 0:14:26
43000 -- (-4076.336) [-4058.607] (-4068.482) (-4072.537) * (-4084.028) [-4071.953] (-4065.212) (-4075.518) -- 0:14:27
44000 -- (-4077.602) [-4069.001] (-4085.606) (-4066.467) * (-4067.792) [-4061.284] (-4070.564) (-4068.427) -- 0:14:29
45000 -- [-4073.119] (-4071.477) (-4069.400) (-4078.409) * (-4069.265) (-4079.909) (-4068.254) [-4078.344] -- 0:14:30
Average standard deviation of split frequencies: 0.033613
46000 -- (-4075.850) [-4066.878] (-4081.843) (-4072.941) * [-4067.578] (-4071.234) (-4066.377) (-4063.973) -- 0:14:31
47000 -- (-4064.509) [-4072.307] (-4069.499) (-4071.333) * (-4082.356) [-4068.468] (-4061.224) (-4069.270) -- 0:14:31
48000 -- (-4077.430) [-4068.874] (-4070.850) (-4066.569) * (-4073.623) (-4073.061) (-4066.999) [-4071.006] -- 0:14:32
49000 -- (-4073.450) [-4064.318] (-4077.964) (-4069.120) * [-4065.365] (-4066.799) (-4063.455) (-4081.032) -- 0:14:33
50000 -- [-4062.519] (-4061.070) (-4065.626) (-4068.042) * (-4075.278) (-4070.217) [-4061.483] (-4075.696) -- 0:14:34
Average standard deviation of split frequencies: 0.036500
51000 -- [-4065.294] (-4059.496) (-4083.502) (-4068.556) * [-4071.651] (-4066.348) (-4078.664) (-4068.162) -- 0:14:34
52000 -- [-4072.973] (-4061.656) (-4068.018) (-4064.775) * [-4077.129] (-4068.469) (-4076.074) (-4075.752) -- 0:14:35
53000 -- [-4065.023] (-4073.279) (-4074.256) (-4066.106) * (-4067.107) (-4086.201) (-4074.377) [-4074.932] -- 0:14:35
54000 -- (-4072.440) (-4071.661) (-4079.102) [-4066.540] * (-4077.076) (-4068.976) (-4061.464) [-4063.070] -- 0:14:35
55000 -- (-4071.847) (-4068.391) [-4068.524] (-4082.044) * (-4066.199) (-4079.907) [-4067.181] (-4071.194) -- 0:14:19
Average standard deviation of split frequencies: 0.042413
56000 -- [-4067.848] (-4069.748) (-4079.286) (-4064.504) * (-4067.704) (-4070.225) (-4074.922) [-4060.450] -- 0:14:19
57000 -- (-4068.914) [-4061.643] (-4062.270) (-4080.357) * (-4068.967) [-4074.777] (-4079.579) (-4078.998) -- 0:14:20
58000 -- (-4064.813) (-4071.959) [-4059.486] (-4083.743) * (-4067.817) (-4068.318) [-4067.868] (-4084.575) -- 0:14:20
59000 -- (-4085.814) (-4061.665) [-4068.796] (-4071.282) * (-4060.527) (-4074.800) (-4071.560) [-4072.526] -- 0:14:21
60000 -- (-4067.302) [-4068.270] (-4062.770) (-4069.689) * (-4075.679) [-4068.924] (-4071.073) (-4064.675) -- 0:14:21
Average standard deviation of split frequencies: 0.043514
61000 -- [-4066.186] (-4067.190) (-4070.747) (-4071.072) * [-4061.351] (-4062.238) (-4081.870) (-4074.581) -- 0:14:22
62000 -- [-4062.335] (-4063.458) (-4082.938) (-4084.465) * (-4077.873) [-4066.663] (-4072.054) (-4080.709) -- 0:14:22
63000 -- [-4070.684] (-4068.314) (-4070.783) (-4071.018) * (-4067.512) (-4071.133) [-4064.218] (-4073.348) -- 0:14:22
64000 -- [-4061.239] (-4077.891) (-4070.870) (-4075.303) * [-4067.631] (-4082.248) (-4070.831) (-4070.864) -- 0:14:22
65000 -- (-4089.821) [-4071.584] (-4067.312) (-4076.495) * [-4064.381] (-4062.311) (-4070.009) (-4083.370) -- 0:14:23
Average standard deviation of split frequencies: 0.039558
66000 -- (-4070.865) (-4067.123) (-4072.328) [-4069.929] * (-4067.048) (-4065.297) (-4077.013) [-4071.867] -- 0:14:23
67000 -- (-4069.289) (-4066.113) (-4070.664) [-4062.978] * (-4065.526) (-4077.917) [-4061.412] (-4078.171) -- 0:14:23
68000 -- [-4065.729] (-4071.373) (-4062.922) (-4069.185) * (-4084.727) [-4070.664] (-4073.947) (-4081.217) -- 0:14:23
69000 -- (-4077.733) [-4070.175] (-4083.425) (-4072.317) * [-4071.880] (-4082.255) (-4064.478) (-4071.909) -- 0:14:23
70000 -- [-4067.688] (-4066.094) (-4065.682) (-4066.972) * [-4067.184] (-4071.782) (-4071.595) (-4081.061) -- 0:14:23
Average standard deviation of split frequencies: 0.037890
71000 -- (-4082.897) [-4070.379] (-4080.752) (-4058.020) * (-4069.035) [-4069.586] (-4065.519) (-4068.530) -- 0:14:23
72000 -- (-4073.583) (-4070.579) (-4076.630) [-4058.652] * (-4060.938) (-4064.772) [-4062.577] (-4079.129) -- 0:14:10
73000 -- (-4077.060) (-4074.292) [-4068.622] (-4070.183) * [-4067.800] (-4069.490) (-4073.881) (-4086.847) -- 0:14:10
74000 -- (-4074.269) (-4084.123) [-4063.973] (-4055.776) * (-4080.758) (-4067.892) (-4071.982) [-4077.836] -- 0:14:10
75000 -- (-4059.222) (-4064.081) [-4057.650] (-4073.628) * (-4073.471) (-4072.587) (-4075.830) [-4076.651] -- 0:14:11
Average standard deviation of split frequencies: 0.033598
76000 -- (-4076.756) (-4069.201) (-4073.863) [-4067.554] * (-4080.777) (-4069.808) (-4062.922) [-4066.169] -- 0:14:11
77000 -- [-4067.289] (-4069.260) (-4078.910) (-4076.348) * (-4081.246) (-4074.983) [-4066.646] (-4075.715) -- 0:14:11
78000 -- (-4067.184) (-4074.136) (-4072.499) [-4059.437] * (-4062.182) (-4073.096) (-4070.095) [-4067.130] -- 0:14:11
79000 -- [-4071.905] (-4062.021) (-4077.353) (-4078.804) * [-4053.935] (-4080.972) (-4070.163) (-4080.887) -- 0:14:11
80000 -- (-4075.029) (-4075.230) [-4069.751] (-4065.192) * [-4066.140] (-4084.315) (-4078.725) (-4068.911) -- 0:14:11
Average standard deviation of split frequencies: 0.029950
81000 -- [-4068.421] (-4075.584) (-4080.887) (-4067.913) * (-4077.133) [-4073.395] (-4070.223) (-4074.335) -- 0:14:10
82000 -- (-4074.497) (-4074.822) [-4070.099] (-4073.377) * (-4075.116) (-4075.957) (-4071.154) [-4066.179] -- 0:14:10
83000 -- (-4075.722) (-4071.119) [-4076.901] (-4072.156) * (-4068.066) (-4070.493) (-4066.769) [-4062.117] -- 0:14:10
84000 -- (-4075.654) (-4079.856) (-4093.611) [-4061.593] * (-4081.635) (-4085.215) (-4072.153) [-4071.581] -- 0:14:10
85000 -- (-4080.335) (-4087.250) [-4065.216] (-4070.550) * (-4070.751) [-4061.669] (-4064.724) (-4079.042) -- 0:14:10
Average standard deviation of split frequencies: 0.028942
86000 -- [-4075.412] (-4077.132) (-4069.657) (-4066.906) * (-4073.849) (-4081.034) [-4072.099] (-4060.957) -- 0:14:10
87000 -- [-4063.920] (-4073.596) (-4076.847) (-4067.612) * (-4064.374) (-4075.312) (-4067.587) [-4068.441] -- 0:14:10
88000 -- (-4071.593) (-4082.091) (-4074.419) [-4064.820] * (-4076.978) (-4082.645) (-4073.580) [-4069.691] -- 0:14:09
89000 -- (-4074.857) (-4068.885) (-4074.601) [-4068.023] * (-4063.533) (-4082.119) (-4064.313) [-4060.957] -- 0:14:09
90000 -- [-4055.147] (-4072.745) (-4075.531) (-4065.373) * (-4064.376) (-4069.844) (-4075.899) [-4074.249] -- 0:13:59
Average standard deviation of split frequencies: 0.024188
91000 -- (-4071.840) (-4079.674) [-4066.411] (-4064.888) * [-4065.388] (-4081.331) (-4068.477) (-4076.370) -- 0:13:59
92000 -- (-4079.728) (-4072.702) (-4071.611) [-4062.733] * (-4055.919) (-4067.934) (-4064.661) [-4059.697] -- 0:13:58
93000 -- (-4069.612) (-4078.358) [-4067.139] (-4068.436) * (-4065.895) (-4075.228) (-4080.728) [-4069.518] -- 0:13:58
94000 -- (-4067.091) (-4074.358) [-4072.856] (-4073.326) * (-4059.906) (-4076.812) (-4076.918) [-4073.978] -- 0:13:58
95000 -- (-4073.470) (-4069.304) (-4069.292) [-4069.222] * (-4076.108) (-4083.014) [-4071.655] (-4074.530) -- 0:13:58
Average standard deviation of split frequencies: 0.018619
96000 -- (-4069.781) (-4078.393) [-4068.271] (-4069.401) * (-4081.083) (-4093.646) [-4074.502] (-4066.238) -- 0:13:58
97000 -- (-4079.888) [-4069.744] (-4067.996) (-4071.159) * (-4082.966) [-4067.584] (-4082.124) (-4070.740) -- 0:13:57
98000 -- (-4067.131) (-4076.674) (-4089.196) [-4068.259] * (-4076.552) [-4069.928] (-4081.397) (-4077.369) -- 0:13:57
99000 -- (-4078.094) (-4073.343) (-4085.699) [-4071.404] * (-4074.471) (-4069.974) (-4065.007) [-4061.465] -- 0:13:57
100000 -- (-4075.969) [-4065.844] (-4081.067) (-4075.646) * (-4067.755) [-4070.304] (-4072.869) (-4076.083) -- 0:13:57
Average standard deviation of split frequencies: 0.021378
101000 -- (-4072.338) (-4069.849) (-4076.490) [-4069.753] * [-4070.381] (-4069.528) (-4069.784) (-4080.675) -- 0:13:56
102000 -- (-4072.523) (-4069.242) (-4072.296) [-4065.425] * (-4079.289) [-4078.035] (-4080.544) (-4068.177) -- 0:13:56
103000 -- [-4087.813] (-4069.154) (-4076.125) (-4081.174) * [-4068.775] (-4074.740) (-4080.493) (-4075.163) -- 0:13:56
104000 -- (-4096.366) [-4063.937] (-4080.840) (-4065.641) * (-4074.056) [-4061.153] (-4081.292) (-4076.338) -- 0:13:55
105000 -- [-4062.935] (-4065.914) (-4074.876) (-4078.339) * (-4065.472) [-4064.235] (-4062.404) (-4073.263) -- 0:13:46
Average standard deviation of split frequencies: 0.019390
106000 -- (-4068.928) (-4065.902) [-4080.021] (-4086.313) * (-4077.160) (-4068.466) (-4068.559) [-4071.633] -- 0:13:46
107000 -- (-4078.050) (-4071.874) [-4061.573] (-4070.464) * (-4083.221) [-4075.124] (-4059.542) (-4074.524) -- 0:13:46
108000 -- (-4067.098) [-4069.658] (-4067.900) (-4086.878) * [-4063.254] (-4079.537) (-4066.460) (-4072.199) -- 0:13:45
109000 -- (-4071.521) (-4076.985) [-4074.369] (-4072.731) * (-4077.357) (-4086.436) (-4074.483) [-4068.779] -- 0:13:45
110000 -- [-4066.244] (-4067.192) (-4078.198) (-4075.992) * (-4069.290) (-4080.339) (-4074.433) [-4077.769] -- 0:13:45
Average standard deviation of split frequencies: 0.018913
111000 -- (-4067.679) (-4086.964) [-4065.455] (-4069.619) * (-4063.659) (-4065.290) (-4075.073) [-4064.769] -- 0:13:44
112000 -- (-4071.471) [-4063.367] (-4077.186) (-4063.961) * (-4072.923) (-4065.866) (-4070.716) [-4073.778] -- 0:13:44
113000 -- [-4073.130] (-4067.025) (-4078.543) (-4065.683) * (-4073.887) (-4073.208) [-4059.536] (-4070.420) -- 0:13:44
114000 -- (-4079.571) [-4067.536] (-4066.348) (-4059.692) * (-4074.931) (-4064.491) [-4073.974] (-4062.752) -- 0:13:43
115000 -- (-4078.935) [-4065.724] (-4070.558) (-4073.536) * (-4071.364) (-4068.956) (-4086.123) [-4067.802] -- 0:13:43
Average standard deviation of split frequencies: 0.019994
116000 -- (-4080.590) (-4069.551) (-4062.866) [-4066.439] * [-4066.392] (-4071.015) (-4070.608) (-4078.240) -- 0:13:43
117000 -- (-4076.605) (-4081.934) [-4065.705] (-4064.226) * [-4077.297] (-4072.514) (-4067.899) (-4087.433) -- 0:13:42
118000 -- (-4075.779) [-4066.225] (-4083.040) (-4062.218) * (-4070.547) (-4067.874) (-4074.060) [-4067.802] -- 0:13:42
119000 -- (-4068.162) (-4069.357) [-4060.986] (-4064.745) * (-4070.273) [-4061.446] (-4070.299) (-4073.903) -- 0:13:41
120000 -- (-4077.036) (-4068.595) (-4056.781) [-4064.920] * (-4073.220) [-4063.263] (-4070.936) (-4068.098) -- 0:13:41
Average standard deviation of split frequencies: 0.017971
121000 -- [-4063.124] (-4082.686) (-4075.986) (-4066.064) * (-4077.228) [-4071.563] (-4067.912) (-4085.568) -- 0:13:40
122000 -- (-4068.233) [-4069.499] (-4062.972) (-4068.025) * (-4073.192) [-4068.366] (-4068.356) (-4078.658) -- 0:13:40
123000 -- (-4078.965) [-4064.482] (-4062.769) (-4071.355) * (-4083.240) (-4062.075) [-4064.243] (-4078.173) -- 0:13:39
124000 -- (-4064.640) (-4065.732) [-4056.999] (-4076.262) * (-4068.195) (-4078.973) [-4063.939] (-4069.925) -- 0:13:32
125000 -- (-4067.515) [-4068.711] (-4072.807) (-4061.960) * [-4060.284] (-4068.732) (-4065.595) (-4069.404) -- 0:13:32
Average standard deviation of split frequencies: 0.018419
126000 -- [-4066.218] (-4081.081) (-4075.458) (-4079.853) * (-4069.884) [-4071.528] (-4064.920) (-4073.648) -- 0:13:31
127000 -- [-4079.453] (-4063.671) (-4078.306) (-4077.518) * [-4074.557] (-4070.697) (-4082.936) (-4076.110) -- 0:13:31
128000 -- (-4082.013) (-4072.659) (-4077.716) [-4078.331] * [-4068.093] (-4061.193) (-4068.709) (-4069.337) -- 0:13:30
129000 -- [-4073.890] (-4082.713) (-4069.611) (-4072.771) * (-4066.834) [-4069.818] (-4077.174) (-4077.292) -- 0:13:30
130000 -- (-4066.650) [-4071.406] (-4068.531) (-4075.176) * (-4077.054) (-4073.687) [-4060.897] (-4064.984) -- 0:13:29
Average standard deviation of split frequencies: 0.016451
131000 -- [-4072.463] (-4067.251) (-4073.241) (-4075.826) * (-4073.168) [-4073.944] (-4087.558) (-4077.094) -- 0:13:29
132000 -- (-4070.935) (-4072.150) [-4064.874] (-4084.026) * (-4066.596) [-4071.662] (-4078.663) (-4092.609) -- 0:13:28
133000 -- [-4063.457] (-4070.582) (-4068.572) (-4071.476) * (-4074.831) [-4063.369] (-4071.723) (-4074.968) -- 0:13:28
134000 -- (-4069.987) [-4056.471] (-4084.989) (-4077.005) * (-4068.177) (-4059.573) (-4085.983) [-4071.292] -- 0:13:27
135000 -- (-4082.837) (-4063.526) [-4069.869] (-4066.043) * (-4079.881) (-4066.978) (-4080.277) [-4069.634] -- 0:13:27
Average standard deviation of split frequencies: 0.017464
136000 -- (-4072.001) (-4075.666) [-4068.011] (-4066.750) * (-4068.119) (-4060.421) (-4068.834) [-4065.026] -- 0:13:20
137000 -- (-4064.713) (-4074.652) [-4063.713] (-4066.247) * (-4065.824) (-4072.763) (-4072.727) [-4078.665] -- 0:13:20
138000 -- [-4066.569] (-4077.488) (-4068.179) (-4078.904) * (-4076.923) (-4068.669) (-4076.585) [-4068.790] -- 0:13:19
139000 -- (-4067.111) [-4063.045] (-4069.143) (-4080.595) * [-4068.556] (-4078.059) (-4065.469) (-4071.043) -- 0:13:19
140000 -- (-4065.389) (-4077.715) [-4072.836] (-4071.179) * [-4072.644] (-4075.389) (-4065.701) (-4077.046) -- 0:13:18
Average standard deviation of split frequencies: 0.015282
141000 -- [-4071.427] (-4080.561) (-4080.005) (-4072.727) * [-4064.468] (-4066.920) (-4075.483) (-4075.288) -- 0:13:18
142000 -- (-4082.829) (-4084.483) [-4068.354] (-4060.682) * [-4065.047] (-4071.786) (-4067.264) (-4076.067) -- 0:13:17
143000 -- (-4077.568) [-4069.795] (-4066.232) (-4067.170) * (-4068.903) (-4068.133) (-4062.108) [-4063.624] -- 0:13:17
144000 -- (-4077.542) [-4073.631] (-4075.958) (-4087.930) * (-4072.276) (-4073.957) (-4069.452) [-4071.214] -- 0:13:16
145000 -- (-4072.265) [-4061.296] (-4068.287) (-4067.855) * [-4071.760] (-4066.752) (-4071.744) (-4068.792) -- 0:13:16
Average standard deviation of split frequencies: 0.015523
146000 -- (-4071.080) (-4077.286) (-4063.714) [-4067.299] * [-4071.811] (-4070.354) (-4068.576) (-4070.447) -- 0:13:15
147000 -- (-4076.236) (-4081.912) (-4060.494) [-4064.292] * (-4079.640) [-4063.263] (-4076.966) (-4063.987) -- 0:13:14
148000 -- (-4077.604) (-4088.635) (-4073.495) [-4070.789] * [-4065.370] (-4070.918) (-4068.808) (-4071.562) -- 0:13:14
149000 -- (-4068.338) (-4083.396) (-4068.504) [-4069.757] * (-4059.887) (-4072.972) (-4069.220) [-4067.904] -- 0:13:13
150000 -- (-4080.507) [-4065.191] (-4064.768) (-4076.490) * (-4073.543) (-4077.051) [-4068.837] (-4075.250) -- 0:13:07
Average standard deviation of split frequencies: 0.014643
151000 -- (-4069.367) (-4067.277) (-4065.508) [-4076.742] * (-4075.559) (-4075.183) [-4066.308] (-4095.545) -- 0:13:07
152000 -- (-4070.647) [-4071.933] (-4063.408) (-4066.177) * (-4068.669) (-4071.491) (-4067.797) [-4068.411] -- 0:13:06
153000 -- (-4069.634) (-4071.609) [-4062.569] (-4073.181) * (-4084.892) (-4072.943) (-4067.651) [-4068.058] -- 0:13:06
154000 -- (-4064.685) (-4075.762) (-4071.544) [-4077.270] * (-4062.244) [-4065.063] (-4068.737) (-4090.529) -- 0:13:05
155000 -- [-4065.978] (-4064.566) (-4064.066) (-4076.506) * [-4073.254] (-4073.318) (-4067.990) (-4084.469) -- 0:13:05
Average standard deviation of split frequencies: 0.015109
156000 -- [-4068.685] (-4074.083) (-4066.091) (-4076.637) * (-4072.643) (-4072.038) [-4066.326] (-4076.942) -- 0:13:04
157000 -- (-4071.489) (-4067.051) [-4065.560] (-4074.547) * (-4073.037) [-4076.123] (-4074.027) (-4086.789) -- 0:13:03
158000 -- (-4062.753) (-4068.334) [-4070.558] (-4074.994) * (-4066.302) (-4072.795) (-4065.543) [-4069.990] -- 0:13:03
159000 -- (-4077.340) (-4061.710) [-4076.683] (-4067.413) * [-4071.103] (-4083.734) (-4074.816) (-4068.004) -- 0:13:02
160000 -- (-4079.524) [-4062.206] (-4075.172) (-4067.281) * (-4076.898) [-4062.676] (-4070.698) (-4087.768) -- 0:13:02
Average standard deviation of split frequencies: 0.015374
161000 -- (-4086.779) [-4062.913] (-4072.380) (-4062.905) * (-4072.554) [-4075.261] (-4085.093) (-4063.800) -- 0:13:01
162000 -- (-4067.109) [-4065.080] (-4070.456) (-4072.917) * (-4072.334) (-4068.371) [-4063.949] (-4071.310) -- 0:13:01
163000 -- [-4067.730] (-4074.425) (-4067.829) (-4072.975) * (-4077.646) (-4062.350) [-4066.729] (-4073.165) -- 0:13:00
164000 -- (-4063.245) [-4066.759] (-4074.687) (-4067.248) * (-4072.830) (-4071.539) [-4063.354] (-4064.218) -- 0:12:59
165000 -- (-4068.358) (-4068.503) [-4062.756] (-4072.461) * (-4073.718) (-4082.132) [-4069.281] (-4080.717) -- 0:12:59
Average standard deviation of split frequencies: 0.016383
166000 -- (-4065.849) (-4067.198) [-4068.856] (-4075.446) * (-4082.821) (-4084.754) (-4068.659) [-4072.604] -- 0:12:58
167000 -- (-4067.009) (-4075.692) (-4073.219) [-4063.697] * (-4064.071) [-4064.423] (-4071.972) (-4076.481) -- 0:12:58
168000 -- (-4062.673) (-4086.727) (-4082.895) [-4068.800] * [-4073.060] (-4066.962) (-4082.299) (-4078.890) -- 0:12:57
169000 -- [-4062.779] (-4066.534) (-4085.808) (-4075.576) * (-4056.459) (-4087.272) (-4070.268) [-4064.467] -- 0:12:56
170000 -- (-4074.590) (-4068.671) (-4083.689) [-4072.720] * (-4070.329) (-4069.475) (-4081.297) [-4074.746] -- 0:12:56
Average standard deviation of split frequencies: 0.016042
171000 -- (-4066.345) (-4076.967) (-4071.700) [-4069.919] * [-4064.384] (-4068.783) (-4076.103) (-4072.298) -- 0:12:55
172000 -- [-4061.468] (-4071.232) (-4072.588) (-4060.724) * (-4078.500) (-4073.875) [-4059.695] (-4068.273) -- 0:12:55
173000 -- [-4068.085] (-4068.915) (-4069.800) (-4070.722) * [-4060.036] (-4074.131) (-4071.108) (-4075.524) -- 0:12:54
174000 -- (-4069.080) (-4074.992) [-4066.789] (-4063.078) * [-4075.871] (-4070.296) (-4074.482) (-4064.805) -- 0:12:53
175000 -- (-4075.644) [-4077.844] (-4068.985) (-4070.782) * [-4062.853] (-4064.304) (-4079.091) (-4081.846) -- 0:12:53
Average standard deviation of split frequencies: 0.015556
176000 -- (-4059.263) (-4068.643) (-4077.417) [-4076.649] * (-4067.300) (-4072.384) (-4066.951) [-4070.753] -- 0:12:47
177000 -- (-4064.970) [-4062.012] (-4066.495) (-4077.861) * (-4073.431) (-4079.529) [-4065.031] (-4076.287) -- 0:12:47
178000 -- (-4071.004) (-4059.966) (-4070.752) [-4075.380] * (-4073.223) (-4061.164) (-4068.721) [-4077.213] -- 0:12:46
179000 -- (-4060.352) (-4073.940) [-4072.682] (-4082.224) * [-4059.192] (-4079.112) (-4074.091) (-4078.177) -- 0:12:45
180000 -- [-4067.667] (-4077.514) (-4078.647) (-4085.451) * [-4065.858] (-4075.948) (-4073.311) (-4071.223) -- 0:12:45
Average standard deviation of split frequencies: 0.014953
181000 -- (-4069.837) [-4066.873] (-4068.013) (-4079.352) * (-4066.693) (-4081.321) [-4062.403] (-4064.789) -- 0:12:44
182000 -- (-4074.194) (-4065.757) [-4065.302] (-4074.765) * [-4067.380] (-4073.004) (-4071.357) (-4067.998) -- 0:12:44
183000 -- (-4067.393) [-4065.677] (-4077.029) (-4072.000) * (-4080.151) (-4077.754) [-4063.803] (-4077.924) -- 0:12:43
184000 -- [-4066.850] (-4076.391) (-4085.213) (-4083.160) * (-4068.946) (-4091.500) [-4063.820] (-4073.330) -- 0:12:42
185000 -- (-4069.630) (-4074.111) (-4077.056) [-4065.738] * [-4067.870] (-4080.781) (-4072.419) (-4075.863) -- 0:12:42
Average standard deviation of split frequencies: 0.015791
186000 -- (-4069.790) [-4068.105] (-4085.357) (-4067.366) * [-4066.273] (-4082.779) (-4080.317) (-4076.434) -- 0:12:41
187000 -- (-4083.672) (-4063.438) [-4061.130] (-4075.854) * [-4073.861] (-4088.198) (-4071.156) (-4069.491) -- 0:12:40
188000 -- (-4064.971) (-4080.807) (-4071.395) [-4074.006] * (-4074.419) [-4071.867] (-4070.280) (-4076.223) -- 0:12:40
189000 -- (-4075.706) [-4080.110] (-4073.922) (-4071.450) * (-4081.751) (-4085.092) (-4071.630) [-4076.405] -- 0:12:39
190000 -- (-4073.638) (-4066.840) [-4056.751] (-4082.247) * [-4063.731] (-4085.170) (-4070.256) (-4066.020) -- 0:12:38
Average standard deviation of split frequencies: 0.014736
191000 -- (-4073.002) (-4071.055) [-4064.433] (-4073.009) * (-4077.520) (-4069.466) (-4066.482) [-4062.359] -- 0:12:38
192000 -- (-4068.553) [-4061.700] (-4072.044) (-4066.767) * [-4070.000] (-4093.523) (-4071.184) (-4072.703) -- 0:12:37
193000 -- (-4086.407) (-4066.608) [-4067.196] (-4079.296) * (-4063.476) (-4069.358) (-4077.479) [-4064.232] -- 0:12:32
194000 -- [-4072.895] (-4071.397) (-4074.951) (-4070.757) * (-4075.099) [-4064.225] (-4073.468) (-4072.796) -- 0:12:31
195000 -- (-4069.248) [-4073.195] (-4060.486) (-4073.533) * (-4082.913) [-4069.603] (-4069.122) (-4071.394) -- 0:12:31
Average standard deviation of split frequencies: 0.015297
196000 -- [-4063.212] (-4065.639) (-4066.171) (-4083.047) * (-4070.213) (-4069.132) [-4068.374] (-4073.121) -- 0:12:30
197000 -- (-4067.871) [-4081.677] (-4078.728) (-4077.452) * (-4065.046) (-4066.311) (-4078.960) [-4067.746] -- 0:12:30
198000 -- (-4087.011) (-4073.426) [-4071.705] (-4075.882) * (-4070.181) (-4078.301) (-4071.045) [-4062.808] -- 0:12:29
199000 -- [-4070.097] (-4072.379) (-4075.087) (-4078.208) * (-4069.778) (-4069.301) [-4063.265] (-4064.697) -- 0:12:28
200000 -- (-4083.218) (-4073.939) (-4077.604) [-4062.593] * (-4075.876) (-4067.111) (-4060.440) [-4067.682] -- 0:12:28
Average standard deviation of split frequencies: 0.018251
201000 -- (-4076.329) [-4064.040] (-4070.645) (-4069.113) * [-4059.683] (-4079.714) (-4067.750) (-4067.950) -- 0:12:27
202000 -- (-4065.229) (-4071.359) [-4060.078] (-4073.684) * [-4061.286] (-4070.541) (-4070.180) (-4070.765) -- 0:12:26
203000 -- (-4066.249) (-4076.290) [-4075.362] (-4071.146) * [-4068.016] (-4074.242) (-4072.270) (-4077.906) -- 0:12:25
204000 -- (-4069.539) [-4064.935] (-4069.983) (-4077.081) * (-4075.319) [-4071.550] (-4067.963) (-4070.743) -- 0:12:21
205000 -- (-4079.356) (-4074.663) (-4073.462) [-4074.389] * (-4085.281) (-4073.151) [-4068.063] (-4074.086) -- 0:12:20
Average standard deviation of split frequencies: 0.017209
206000 -- (-4069.677) (-4079.499) (-4074.866) [-4060.902] * (-4077.977) [-4071.264] (-4070.490) (-4071.673) -- 0:12:20
207000 -- [-4074.571] (-4072.110) (-4073.050) (-4069.407) * (-4063.185) (-4064.782) [-4065.097] (-4083.149) -- 0:12:19
208000 -- [-4070.683] (-4081.450) (-4081.076) (-4068.880) * [-4069.019] (-4079.894) (-4072.347) (-4070.923) -- 0:12:18
209000 -- (-4099.071) [-4068.404] (-4077.137) (-4060.501) * (-4083.820) (-4064.419) (-4067.650) [-4066.648] -- 0:12:18
210000 -- (-4079.327) [-4068.256] (-4070.626) (-4070.632) * (-4074.813) (-4085.941) [-4064.019] (-4073.314) -- 0:12:17
Average standard deviation of split frequencies: 0.015850
211000 -- (-4080.108) [-4066.209] (-4069.817) (-4062.949) * [-4058.678] (-4068.178) (-4066.845) (-4069.943) -- 0:12:16
212000 -- (-4074.653) (-4078.388) [-4064.247] (-4063.014) * (-4073.148) (-4078.002) (-4078.776) [-4065.038] -- 0:12:15
213000 -- (-4069.828) (-4076.931) (-4070.521) [-4066.552] * (-4077.966) [-4069.621] (-4067.133) (-4067.624) -- 0:12:15
214000 -- (-4073.699) [-4066.011] (-4073.666) (-4079.113) * (-4064.699) [-4079.471] (-4075.319) (-4067.953) -- 0:12:14
215000 -- [-4065.391] (-4057.475) (-4074.828) (-4073.557) * [-4068.299] (-4066.917) (-4065.685) (-4071.627) -- 0:12:13
Average standard deviation of split frequencies: 0.015277
216000 -- [-4066.532] (-4067.466) (-4069.735) (-4068.760) * (-4065.458) [-4072.878] (-4064.019) (-4071.466) -- 0:12:13
217000 -- (-4079.953) (-4074.617) (-4069.023) [-4069.683] * (-4067.961) (-4078.057) (-4066.466) [-4064.104] -- 0:12:08
218000 -- [-4074.116] (-4080.605) (-4061.079) (-4079.245) * [-4067.262] (-4072.284) (-4072.057) (-4087.751) -- 0:12:08
219000 -- (-4074.963) (-4067.010) [-4064.516] (-4084.427) * (-4073.706) (-4074.678) [-4063.753] (-4074.206) -- 0:12:07
220000 -- (-4078.479) (-4077.766) [-4066.269] (-4071.160) * (-4068.528) (-4064.790) [-4063.664] (-4078.748) -- 0:12:06
Average standard deviation of split frequencies: 0.015894
221000 -- [-4073.758] (-4076.138) (-4076.585) (-4066.473) * [-4060.116] (-4081.137) (-4070.131) (-4063.315) -- 0:12:06
222000 -- [-4068.551] (-4061.480) (-4085.749) (-4063.073) * (-4067.256) (-4072.329) [-4063.934] (-4066.606) -- 0:12:05
223000 -- (-4067.103) (-4074.157) (-4086.675) [-4065.398] * (-4065.643) (-4077.590) (-4082.620) [-4060.052] -- 0:12:04
224000 -- (-4064.647) [-4069.014] (-4073.541) (-4074.547) * [-4082.386] (-4066.138) (-4084.563) (-4080.255) -- 0:12:04
225000 -- (-4064.763) (-4086.678) [-4065.997] (-4069.704) * (-4084.736) [-4060.568] (-4069.872) (-4069.124) -- 0:12:03
Average standard deviation of split frequencies: 0.015602
226000 -- [-4069.711] (-4096.446) (-4064.547) (-4061.901) * (-4069.950) [-4063.183] (-4081.180) (-4062.035) -- 0:12:02
227000 -- (-4082.967) (-4061.631) [-4064.799] (-4067.787) * (-4072.958) [-4066.938] (-4073.489) (-4066.070) -- 0:11:58
228000 -- (-4080.183) (-4068.159) (-4078.514) [-4065.939] * (-4080.654) (-4063.530) (-4061.890) [-4064.814] -- 0:11:57
229000 -- (-4073.150) (-4065.967) (-4063.853) [-4069.166] * (-4081.539) (-4064.877) (-4084.762) [-4078.011] -- 0:11:57
230000 -- (-4066.235) [-4071.167] (-4077.259) (-4069.682) * (-4073.397) [-4064.860] (-4072.012) (-4083.499) -- 0:11:56
Average standard deviation of split frequencies: 0.016009
231000 -- (-4069.710) (-4076.012) (-4065.649) [-4077.945] * (-4069.197) (-4081.756) [-4066.215] (-4081.880) -- 0:11:55
232000 -- (-4073.644) (-4079.714) (-4063.412) [-4070.858] * (-4079.098) (-4069.170) [-4074.715] (-4076.430) -- 0:11:55
233000 -- (-4071.653) (-4068.638) [-4069.068] (-4074.185) * [-4067.603] (-4066.737) (-4076.228) (-4081.324) -- 0:11:54
234000 -- (-4075.026) (-4064.503) (-4063.963) [-4067.868] * (-4065.057) [-4066.238] (-4081.935) (-4082.860) -- 0:11:53
235000 -- (-4083.581) (-4068.592) [-4069.523] (-4069.730) * [-4057.773] (-4072.256) (-4066.177) (-4063.988) -- 0:11:52
Average standard deviation of split frequencies: 0.015231
236000 -- (-4092.274) (-4068.714) (-4069.926) [-4066.352] * (-4065.757) (-4079.115) [-4061.842] (-4080.185) -- 0:11:52
237000 -- (-4078.302) (-4067.259) (-4070.755) [-4076.697] * (-4069.085) (-4080.407) [-4065.595] (-4074.820) -- 0:11:51
238000 -- (-4080.288) (-4075.102) (-4071.194) [-4069.185] * [-4064.939] (-4092.580) (-4074.372) (-4074.096) -- 0:11:50
239000 -- (-4070.796) [-4062.650] (-4066.554) (-4072.408) * [-4064.862] (-4079.679) (-4090.167) (-4070.636) -- 0:11:46
240000 -- [-4061.353] (-4067.758) (-4069.731) (-4065.462) * (-4073.477) (-4069.702) (-4083.055) [-4068.382] -- 0:11:46
Average standard deviation of split frequencies: 0.017302
241000 -- (-4069.242) [-4061.245] (-4085.139) (-4071.719) * (-4073.782) (-4067.944) (-4073.178) [-4070.948] -- 0:11:45
242000 -- [-4071.750] (-4073.632) (-4073.593) (-4063.364) * (-4069.074) (-4067.911) (-4081.237) [-4058.518] -- 0:11:44
243000 -- (-4072.745) (-4066.992) [-4064.116] (-4068.974) * (-4072.344) (-4061.287) [-4063.579] (-4072.955) -- 0:11:44
244000 -- [-4064.806] (-4076.708) (-4079.700) (-4068.126) * (-4082.252) (-4069.035) [-4061.032] (-4069.000) -- 0:11:43
245000 -- [-4064.946] (-4073.583) (-4081.712) (-4073.705) * (-4079.773) (-4066.764) (-4072.374) [-4068.739] -- 0:11:42
Average standard deviation of split frequencies: 0.017486
246000 -- (-4069.002) (-4085.355) (-4075.190) [-4069.301] * (-4075.081) (-4063.279) [-4065.509] (-4074.760) -- 0:11:41
247000 -- (-4063.425) (-4078.998) (-4088.718) [-4066.438] * [-4061.885] (-4065.768) (-4088.301) (-4074.780) -- 0:11:41
248000 -- (-4064.212) [-4067.382] (-4076.420) (-4064.307) * [-4068.454] (-4073.033) (-4068.904) (-4072.828) -- 0:11:40
249000 -- (-4076.410) (-4072.982) [-4066.812] (-4082.698) * (-4082.491) (-4065.774) (-4062.728) [-4057.320] -- 0:11:39
250000 -- [-4072.295] (-4071.859) (-4074.920) (-4075.214) * (-4082.399) (-4081.142) [-4057.913] (-4067.785) -- 0:11:39
Average standard deviation of split frequencies: 0.018649
251000 -- (-4069.013) [-4081.656] (-4063.474) (-4088.541) * (-4071.458) (-4077.022) (-4064.603) [-4068.844] -- 0:11:38
252000 -- (-4071.811) (-4078.103) [-4070.144] (-4076.808) * [-4064.752] (-4077.629) (-4066.657) (-4078.692) -- 0:11:37
253000 -- [-4068.074] (-4073.074) (-4074.191) (-4083.284) * (-4075.847) (-4070.674) (-4072.314) [-4069.849] -- 0:11:33
254000 -- [-4065.876] (-4067.647) (-4067.626) (-4069.310) * (-4066.716) [-4070.605] (-4072.053) (-4073.407) -- 0:11:33
255000 -- [-4065.724] (-4067.204) (-4071.229) (-4072.351) * (-4059.452) (-4072.646) [-4065.135] (-4075.076) -- 0:11:32
Average standard deviation of split frequencies: 0.018875
256000 -- (-4086.412) [-4075.520] (-4071.824) (-4064.905) * [-4076.431] (-4080.743) (-4074.133) (-4071.779) -- 0:11:31
257000 -- (-4062.776) (-4083.384) [-4061.312] (-4072.247) * [-4065.953] (-4082.988) (-4072.147) (-4067.016) -- 0:11:30
258000 -- [-4076.545] (-4092.288) (-4083.165) (-4072.883) * (-4087.080) (-4066.275) (-4072.290) [-4060.610] -- 0:11:30
259000 -- (-4070.835) [-4066.436] (-4075.646) (-4069.447) * (-4092.114) [-4077.660] (-4073.274) (-4063.783) -- 0:11:29
260000 -- (-4084.156) [-4074.856] (-4068.094) (-4060.508) * [-4062.721] (-4077.767) (-4090.860) (-4067.737) -- 0:11:28
Average standard deviation of split frequencies: 0.018763
261000 -- (-4081.369) (-4071.834) [-4066.282] (-4070.615) * (-4089.826) [-4070.389] (-4083.917) (-4071.897) -- 0:11:28
262000 -- (-4066.903) [-4063.975] (-4066.416) (-4073.093) * [-4075.425] (-4080.142) (-4081.644) (-4064.525) -- 0:11:27
263000 -- [-4070.402] (-4071.717) (-4063.884) (-4083.914) * [-4062.642] (-4068.417) (-4075.635) (-4071.698) -- 0:11:26
264000 -- [-4067.322] (-4078.843) (-4069.692) (-4063.865) * (-4071.523) (-4078.666) (-4073.944) [-4067.054] -- 0:11:25
265000 -- (-4081.930) (-4081.311) [-4062.045] (-4068.537) * [-4064.817] (-4067.492) (-4077.367) (-4089.067) -- 0:11:25
Average standard deviation of split frequencies: 0.018714
266000 -- (-4087.553) (-4069.702) (-4065.046) [-4069.794] * (-4074.400) [-4079.169] (-4069.431) (-4075.949) -- 0:11:24
267000 -- (-4076.391) (-4073.873) (-4071.201) [-4062.524] * [-4064.767] (-4074.478) (-4066.706) (-4084.705) -- 0:11:20
268000 -- (-4081.376) (-4074.586) (-4080.340) [-4066.247] * (-4083.345) (-4084.123) (-4063.465) [-4068.788] -- 0:11:20
269000 -- (-4093.141) (-4078.902) [-4080.842] (-4063.129) * (-4061.400) (-4076.647) [-4058.265] (-4074.531) -- 0:11:19
270000 -- [-4076.770] (-4073.184) (-4069.905) (-4076.236) * (-4071.369) (-4071.728) (-4065.878) [-4063.596] -- 0:11:18
Average standard deviation of split frequencies: 0.019158
271000 -- (-4085.619) (-4085.358) (-4070.027) [-4066.957] * (-4075.553) [-4064.172] (-4079.089) (-4069.954) -- 0:11:17
272000 -- (-4084.411) (-4076.984) [-4066.246] (-4074.969) * (-4078.035) [-4066.805] (-4075.128) (-4065.173) -- 0:11:17
273000 -- (-4065.583) (-4082.007) (-4061.829) [-4071.747] * (-4063.487) [-4062.904] (-4067.788) (-4075.841) -- 0:11:16
274000 -- (-4078.669) (-4079.033) (-4072.354) [-4071.236] * [-4073.007] (-4075.895) (-4084.049) (-4087.892) -- 0:11:15
275000 -- (-4077.186) [-4065.037] (-4067.977) (-4072.354) * [-4073.903] (-4075.874) (-4075.457) (-4066.518) -- 0:11:14
Average standard deviation of split frequencies: 0.019676
276000 -- (-4067.404) (-4062.963) (-4091.571) [-4070.367] * [-4067.857] (-4086.442) (-4075.254) (-4070.436) -- 0:11:14
277000 -- [-4079.435] (-4064.781) (-4066.727) (-4082.203) * (-4067.232) [-4065.017] (-4072.981) (-4075.256) -- 0:11:13
278000 -- (-4081.652) (-4062.969) [-4066.378] (-4081.111) * [-4059.115] (-4066.909) (-4072.372) (-4076.992) -- 0:11:12
279000 -- (-4079.637) (-4066.884) [-4076.443] (-4080.385) * (-4064.554) (-4079.486) [-4068.402] (-4069.339) -- 0:11:09
280000 -- (-4068.659) (-4072.571) [-4067.153] (-4071.563) * [-4059.182] (-4077.009) (-4062.320) (-4084.541) -- 0:11:08
Average standard deviation of split frequencies: 0.021432
281000 -- (-4080.545) (-4075.245) (-4076.136) [-4063.822] * (-4079.821) (-4068.094) (-4078.347) [-4069.635] -- 0:11:07
282000 -- (-4081.291) (-4065.512) [-4065.243] (-4077.037) * [-4058.392] (-4074.767) (-4074.617) (-4066.571) -- 0:11:07
283000 -- [-4062.432] (-4073.844) (-4069.097) (-4078.150) * (-4082.584) (-4068.168) [-4060.042] (-4068.559) -- 0:11:06
284000 -- [-4065.544] (-4070.480) (-4069.591) (-4073.573) * (-4071.096) [-4067.796] (-4085.388) (-4074.833) -- 0:11:05
285000 -- [-4065.185] (-4084.953) (-4081.403) (-4067.702) * (-4069.507) (-4067.375) (-4069.313) [-4068.619] -- 0:11:04
Average standard deviation of split frequencies: 0.021230
286000 -- (-4064.464) [-4072.166] (-4083.500) (-4076.020) * [-4068.461] (-4070.093) (-4066.612) (-4066.190) -- 0:11:04
287000 -- [-4061.781] (-4072.814) (-4070.370) (-4061.381) * (-4073.653) (-4067.224) (-4080.742) [-4076.807] -- 0:11:03
288000 -- (-4072.892) (-4070.426) [-4066.096] (-4076.552) * (-4069.280) (-4078.593) [-4068.259] (-4065.629) -- 0:11:02
289000 -- (-4067.153) [-4075.536] (-4072.841) (-4068.997) * (-4069.028) (-4065.259) (-4066.088) [-4060.845] -- 0:11:01
290000 -- (-4071.453) (-4070.160) (-4078.126) [-4061.758] * (-4073.368) (-4103.141) [-4062.238] (-4065.465) -- 0:11:01
Average standard deviation of split frequencies: 0.020889
291000 -- (-4069.491) (-4083.173) [-4068.926] (-4067.324) * (-4060.143) (-4085.864) (-4069.398) [-4067.585] -- 0:11:00
292000 -- [-4064.850] (-4069.465) (-4074.415) (-4069.786) * (-4069.050) (-4069.000) (-4074.167) [-4065.327] -- 0:10:59
293000 -- (-4061.344) [-4071.141] (-4072.043) (-4078.804) * [-4061.930] (-4075.635) (-4066.345) (-4077.794) -- 0:10:56
294000 -- (-4076.269) (-4068.391) (-4068.940) [-4059.133] * [-4069.877] (-4093.609) (-4071.594) (-4074.002) -- 0:10:55
295000 -- (-4072.031) (-4078.037) (-4069.094) [-4065.786] * (-4067.559) [-4060.534] (-4075.409) (-4075.184) -- 0:10:57
Average standard deviation of split frequencies: 0.019621
296000 -- (-4074.116) (-4068.193) (-4073.936) [-4071.621] * (-4068.114) [-4066.440] (-4077.892) (-4069.649) -- 0:10:56
297000 -- (-4068.316) (-4070.923) (-4075.249) [-4072.453] * (-4078.347) [-4061.341] (-4075.223) (-4073.436) -- 0:10:55
298000 -- (-4076.290) (-4080.404) [-4062.996] (-4068.469) * (-4074.318) (-4065.160) (-4067.424) [-4070.626] -- 0:10:54
299000 -- [-4069.039] (-4070.054) (-4072.719) (-4070.580) * [-4067.423] (-4073.741) (-4084.540) (-4063.667) -- 0:10:54
300000 -- (-4070.153) (-4065.694) [-4065.211] (-4079.397) * (-4077.876) (-4066.893) (-4084.528) [-4061.486] -- 0:10:53
Average standard deviation of split frequencies: 0.020069
301000 -- [-4073.537] (-4070.279) (-4061.348) (-4074.170) * (-4073.828) (-4075.450) (-4074.298) [-4078.766] -- 0:10:50
302000 -- (-4075.152) (-4084.293) [-4067.181] (-4069.871) * (-4065.555) (-4070.635) [-4076.295] (-4079.329) -- 0:10:49
303000 -- (-4068.380) [-4072.773] (-4072.737) (-4074.725) * (-4067.531) [-4066.314] (-4071.562) (-4084.561) -- 0:10:48
304000 -- [-4069.618] (-4073.936) (-4068.386) (-4080.516) * (-4074.668) (-4087.145) (-4077.243) [-4070.746] -- 0:10:47
305000 -- (-4082.000) (-4076.728) [-4078.096] (-4067.755) * (-4081.783) (-4074.389) [-4061.504] (-4072.211) -- 0:10:47
Average standard deviation of split frequencies: 0.018117
306000 -- [-4066.620] (-4083.835) (-4090.359) (-4064.991) * (-4064.718) (-4056.514) (-4082.910) [-4069.464] -- 0:10:46
307000 -- [-4064.852] (-4072.346) (-4076.859) (-4073.837) * (-4080.790) [-4070.902] (-4062.557) (-4077.194) -- 0:10:45
308000 -- (-4072.076) (-4070.576) (-4070.077) [-4067.149] * (-4085.471) (-4077.788) (-4077.026) [-4069.960] -- 0:10:44
309000 -- (-4070.334) [-4068.924] (-4071.907) (-4075.746) * [-4072.009] (-4071.212) (-4074.237) (-4062.562) -- 0:10:44
310000 -- (-4072.527) (-4082.062) (-4079.168) [-4065.257] * (-4063.474) (-4085.099) (-4078.355) [-4069.169] -- 0:10:43
Average standard deviation of split frequencies: 0.017238
311000 -- [-4071.129] (-4072.579) (-4074.222) (-4064.364) * (-4062.713) [-4057.048] (-4080.777) (-4077.323) -- 0:10:42
312000 -- [-4073.118] (-4077.163) (-4064.750) (-4062.635) * (-4062.960) (-4077.479) (-4067.570) [-4066.433] -- 0:10:41
313000 -- (-4066.178) [-4074.705] (-4067.100) (-4078.771) * (-4064.876) [-4067.418] (-4073.335) (-4071.543) -- 0:10:40
314000 -- (-4067.971) (-4072.267) [-4066.199] (-4070.240) * (-4070.831) (-4083.750) (-4071.344) [-4073.263] -- 0:10:40
315000 -- (-4066.226) [-4063.474] (-4067.525) (-4072.863) * (-4076.682) [-4065.007] (-4076.996) (-4075.824) -- 0:10:39
Average standard deviation of split frequencies: 0.015753
316000 -- [-4064.215] (-4067.399) (-4074.116) (-4067.537) * [-4072.996] (-4068.239) (-4069.060) (-4081.700) -- 0:10:36
317000 -- [-4070.652] (-4066.227) (-4067.556) (-4074.366) * (-4083.749) (-4075.147) [-4066.188] (-4072.832) -- 0:10:35
318000 -- (-4068.825) [-4079.857] (-4069.698) (-4086.930) * [-4067.275] (-4068.595) (-4073.003) (-4071.567) -- 0:10:34
319000 -- (-4089.503) (-4080.580) [-4070.195] (-4068.942) * (-4076.849) (-4080.613) [-4063.172] (-4082.372) -- 0:10:34
320000 -- (-4070.054) (-4088.824) [-4069.490] (-4070.093) * (-4071.744) (-4079.626) (-4075.893) [-4071.571] -- 0:10:33
Average standard deviation of split frequencies: 0.016355
321000 -- (-4064.666) (-4074.310) [-4058.390] (-4073.848) * (-4082.166) (-4076.011) [-4070.452] (-4068.310) -- 0:10:32
322000 -- (-4089.514) (-4077.243) [-4076.669] (-4073.777) * (-4064.899) (-4085.259) [-4070.676] (-4075.248) -- 0:10:31
323000 -- (-4083.971) (-4059.624) [-4059.165] (-4085.258) * (-4083.604) [-4067.358] (-4069.338) (-4075.595) -- 0:10:30
324000 -- (-4073.554) (-4071.715) [-4064.708] (-4083.476) * (-4073.591) (-4073.704) [-4066.728] (-4061.266) -- 0:10:30
325000 -- (-4072.499) (-4072.786) [-4067.945] (-4078.343) * (-4067.695) [-4069.726] (-4078.290) (-4079.827) -- 0:10:29
Average standard deviation of split frequencies: 0.016658
326000 -- (-4077.274) [-4070.485] (-4070.461) (-4070.463) * (-4061.007) [-4074.374] (-4076.017) (-4079.362) -- 0:10:26
327000 -- (-4085.950) [-4071.380] (-4065.719) (-4079.150) * [-4066.439] (-4070.628) (-4073.293) (-4080.680) -- 0:10:25
328000 -- (-4076.373) [-4068.560] (-4068.776) (-4071.956) * [-4067.153] (-4076.528) (-4068.909) (-4075.796) -- 0:10:24
329000 -- (-4070.713) (-4070.633) (-4074.268) [-4059.531] * (-4068.997) (-4071.771) (-4066.915) [-4076.818] -- 0:10:24
330000 -- (-4071.447) (-4070.151) (-4076.155) [-4070.421] * (-4072.256) (-4068.782) (-4072.918) [-4064.080] -- 0:10:23
Average standard deviation of split frequencies: 0.018305
331000 -- (-4071.677) (-4068.038) [-4073.671] (-4064.215) * [-4061.172] (-4056.865) (-4068.721) (-4068.309) -- 0:10:22
332000 -- (-4060.799) (-4074.196) (-4073.914) [-4070.446] * (-4077.271) [-4068.151] (-4091.885) (-4070.934) -- 0:10:21
333000 -- [-4056.130] (-4086.577) (-4079.084) (-4064.037) * (-4068.679) (-4089.272) [-4067.711] (-4064.262) -- 0:10:20
334000 -- (-4062.792) (-4066.782) [-4073.393] (-4068.324) * [-4064.879] (-4074.235) (-4079.738) (-4065.255) -- 0:10:20
335000 -- [-4069.938] (-4070.759) (-4083.544) (-4071.505) * (-4073.387) [-4064.675] (-4066.438) (-4061.190) -- 0:10:19
Average standard deviation of split frequencies: 0.017453
336000 -- [-4072.607] (-4074.584) (-4068.803) (-4072.442) * [-4068.601] (-4068.719) (-4065.445) (-4071.937) -- 0:10:18
337000 -- [-4064.277] (-4086.184) (-4069.486) (-4063.447) * (-4073.089) [-4062.207] (-4071.931) (-4078.069) -- 0:10:17
338000 -- [-4077.313] (-4071.325) (-4071.416) (-4071.146) * (-4077.474) (-4071.341) [-4066.143] (-4080.429) -- 0:10:14
339000 -- (-4078.290) [-4077.519] (-4073.458) (-4070.699) * (-4074.050) [-4064.836] (-4070.980) (-4079.425) -- 0:10:14
340000 -- (-4074.754) (-4085.451) (-4065.271) [-4070.761] * (-4079.314) [-4071.465] (-4072.754) (-4081.261) -- 0:10:13
Average standard deviation of split frequencies: 0.017934
341000 -- (-4084.111) (-4071.999) (-4064.422) [-4068.948] * (-4087.204) [-4068.696] (-4076.579) (-4075.004) -- 0:10:12
342000 -- (-4079.117) (-4072.861) [-4063.902] (-4071.308) * (-4072.638) (-4076.839) (-4077.740) [-4066.965] -- 0:10:11
343000 -- (-4067.413) (-4074.070) [-4063.944] (-4078.095) * (-4071.905) [-4063.856] (-4073.678) (-4068.910) -- 0:10:11
344000 -- [-4064.494] (-4068.689) (-4057.574) (-4066.887) * (-4082.842) (-4063.651) [-4068.040] (-4069.972) -- 0:10:10
345000 -- [-4066.399] (-4066.018) (-4070.471) (-4072.948) * (-4067.956) (-4082.365) (-4081.441) [-4057.923] -- 0:10:09
Average standard deviation of split frequencies: 0.016622
346000 -- [-4062.035] (-4078.175) (-4080.205) (-4069.011) * [-4066.096] (-4065.327) (-4061.213) (-4071.306) -- 0:10:08
347000 -- (-4074.263) [-4070.781] (-4076.288) (-4072.884) * (-4069.387) (-4075.467) (-4067.980) [-4075.980] -- 0:10:07
348000 -- (-4070.688) (-4080.430) (-4068.840) [-4064.903] * (-4069.437) (-4065.966) [-4071.525] (-4063.824) -- 0:10:07
349000 -- [-4066.772] (-4066.107) (-4066.598) (-4070.948) * (-4073.316) [-4064.957] (-4076.858) (-4066.478) -- 0:10:06
350000 -- (-4077.421) [-4066.736] (-4092.494) (-4069.261) * [-4061.940] (-4067.933) (-4071.050) (-4078.363) -- 0:10:05
Average standard deviation of split frequencies: 0.015852
351000 -- (-4071.762) (-4073.515) (-4076.370) [-4061.023] * (-4068.561) [-4067.640] (-4067.168) (-4075.816) -- 0:10:04
352000 -- (-4066.893) (-4076.654) [-4063.459] (-4074.907) * [-4070.510] (-4077.395) (-4062.132) (-4077.283) -- 0:10:03
353000 -- (-4072.888) (-4070.752) (-4069.355) [-4065.566] * (-4081.669) [-4062.283] (-4070.191) (-4072.953) -- 0:10:01
354000 -- (-4076.913) (-4077.515) [-4071.969] (-4077.711) * (-4066.976) (-4062.434) (-4082.270) [-4062.070] -- 0:10:00
355000 -- (-4076.253) [-4061.281] (-4074.615) (-4068.694) * [-4071.395] (-4078.597) (-4083.327) (-4060.383) -- 0:09:59
Average standard deviation of split frequencies: 0.016387
356000 -- (-4061.045) [-4068.011] (-4070.713) (-4080.327) * [-4067.159] (-4072.308) (-4073.540) (-4068.032) -- 0:09:58
357000 -- [-4070.463] (-4069.659) (-4091.039) (-4077.397) * (-4072.640) (-4059.499) (-4081.185) [-4058.732] -- 0:09:57
358000 -- [-4064.107] (-4061.075) (-4077.523) (-4069.084) * [-4062.772] (-4070.424) (-4079.789) (-4073.094) -- 0:09:57
359000 -- (-4078.612) (-4060.242) (-4073.316) [-4066.301] * (-4065.797) (-4069.317) [-4070.642] (-4089.640) -- 0:09:56
360000 -- [-4067.714] (-4082.491) (-4061.816) (-4080.712) * (-4075.220) [-4067.211] (-4063.275) (-4067.947) -- 0:09:55
Average standard deviation of split frequencies: 0.016120
361000 -- (-4071.203) (-4074.919) [-4063.310] (-4065.675) * (-4071.920) (-4065.706) [-4062.496] (-4077.501) -- 0:09:54
362000 -- (-4066.499) (-4069.729) [-4067.900] (-4082.807) * (-4070.016) (-4078.000) (-4074.500) [-4071.726] -- 0:09:53
363000 -- (-4081.473) (-4064.620) [-4060.821] (-4067.567) * (-4065.434) (-4082.367) [-4073.226] (-4078.830) -- 0:09:53
364000 -- (-4068.972) (-4073.161) (-4069.160) [-4069.717] * (-4069.981) (-4073.572) [-4068.493] (-4072.320) -- 0:09:52
365000 -- (-4074.860) (-4078.194) (-4072.319) [-4063.386] * (-4074.317) (-4080.252) [-4071.663] (-4070.690) -- 0:09:51
Average standard deviation of split frequencies: 0.016422
366000 -- (-4074.156) [-4064.111] (-4080.291) (-4066.264) * (-4081.520) (-4061.511) (-4071.805) [-4066.240] -- 0:09:50
367000 -- (-4066.762) (-4064.773) [-4066.109] (-4084.238) * (-4077.828) (-4066.651) [-4074.698] (-4086.076) -- 0:09:49
368000 -- (-4068.506) (-4071.094) (-4065.105) [-4075.155] * (-4072.035) (-4066.667) [-4076.194] (-4082.631) -- 0:09:49
369000 -- [-4075.492] (-4086.581) (-4070.093) (-4068.083) * (-4076.026) (-4066.245) [-4066.670] (-4080.178) -- 0:09:48
370000 -- (-4072.459) (-4096.691) (-4069.202) [-4063.646] * (-4071.252) [-4064.172] (-4057.296) (-4067.793) -- 0:09:47
Average standard deviation of split frequencies: 0.015632
371000 -- (-4077.133) (-4068.969) [-4074.046] (-4070.935) * [-4069.035] (-4075.459) (-4075.429) (-4077.967) -- 0:09:46
372000 -- (-4080.355) (-4070.921) (-4079.945) [-4071.357] * [-4069.040] (-4065.903) (-4081.667) (-4075.219) -- 0:09:45
373000 -- [-4071.242] (-4071.184) (-4075.147) (-4071.547) * [-4078.440] (-4080.025) (-4077.681) (-4084.341) -- 0:09:44
374000 -- (-4079.937) (-4071.703) [-4064.910] (-4059.857) * (-4073.330) (-4070.750) [-4066.039] (-4080.474) -- 0:09:44
375000 -- (-4072.065) [-4065.841] (-4064.212) (-4080.158) * (-4060.657) [-4068.381] (-4070.682) (-4064.304) -- 0:09:43
Average standard deviation of split frequencies: 0.015410
376000 -- (-4069.755) (-4080.307) (-4074.109) [-4067.271] * [-4062.217] (-4063.760) (-4073.534) (-4072.089) -- 0:09:40
377000 -- (-4070.328) (-4073.864) [-4076.906] (-4075.941) * (-4067.565) (-4085.382) [-4068.553] (-4067.509) -- 0:09:40
378000 -- (-4072.039) (-4080.087) [-4068.068] (-4076.423) * (-4078.992) (-4070.375) (-4067.481) [-4060.529] -- 0:09:39
379000 -- [-4061.932] (-4078.604) (-4074.440) (-4085.825) * (-4086.937) (-4071.163) [-4067.668] (-4060.241) -- 0:09:38
380000 -- [-4066.089] (-4077.043) (-4078.113) (-4073.727) * [-4072.989] (-4075.473) (-4085.693) (-4082.009) -- 0:09:37
Average standard deviation of split frequencies: 0.015634
381000 -- (-4065.940) [-4068.910] (-4080.506) (-4071.999) * (-4071.047) (-4082.329) [-4063.189] (-4064.162) -- 0:09:36
382000 -- (-4061.971) (-4077.953) [-4068.274] (-4073.931) * (-4075.376) (-4068.039) (-4082.352) [-4070.444] -- 0:09:35
383000 -- (-4064.324) (-4076.917) [-4063.334] (-4068.258) * (-4076.113) (-4071.938) (-4074.279) [-4064.397] -- 0:09:35
384000 -- (-4073.967) (-4079.283) [-4073.962] (-4077.551) * [-4067.005] (-4071.362) (-4073.429) (-4067.887) -- 0:09:34
385000 -- [-4066.285] (-4071.061) (-4083.888) (-4069.038) * [-4067.736] (-4074.362) (-4076.846) (-4072.386) -- 0:09:33
Average standard deviation of split frequencies: 0.016283
386000 -- [-4077.858] (-4070.260) (-4061.817) (-4079.400) * (-4065.751) (-4064.252) [-4069.503] (-4071.987) -- 0:09:32
387000 -- (-4063.442) (-4076.293) (-4080.908) [-4061.971] * [-4064.154] (-4072.531) (-4070.258) (-4061.076) -- 0:09:31
388000 -- (-4070.734) (-4080.288) [-4064.562] (-4071.014) * [-4068.886] (-4067.086) (-4066.215) (-4072.366) -- 0:09:30
389000 -- (-4064.557) (-4078.400) (-4067.868) [-4078.116] * (-4070.382) (-4068.132) [-4076.713] (-4059.612) -- 0:09:28
390000 -- (-4079.264) (-4077.929) [-4068.529] (-4077.949) * (-4075.684) [-4061.607] (-4070.472) (-4078.758) -- 0:09:27
Average standard deviation of split frequencies: 0.016189
391000 -- (-4083.753) (-4066.282) [-4059.201] (-4067.924) * (-4074.296) (-4070.547) [-4058.636] (-4069.603) -- 0:09:26
392000 -- (-4091.278) (-4072.816) (-4066.647) [-4079.887] * (-4068.753) (-4074.943) (-4077.820) [-4060.615] -- 0:09:26
393000 -- (-4079.834) (-4082.679) [-4061.100] (-4079.257) * (-4072.528) (-4066.616) [-4060.191] (-4071.297) -- 0:09:25
394000 -- [-4060.341] (-4073.715) (-4067.994) (-4077.190) * [-4072.361] (-4062.795) (-4073.091) (-4072.497) -- 0:09:24
395000 -- (-4078.689) (-4085.274) [-4063.752] (-4069.613) * (-4067.822) [-4070.428] (-4063.096) (-4083.593) -- 0:09:23
Average standard deviation of split frequencies: 0.017013
396000 -- (-4075.709) (-4070.480) [-4065.992] (-4081.078) * (-4081.332) (-4073.705) (-4071.322) [-4061.893] -- 0:09:22
397000 -- [-4065.886] (-4068.890) (-4080.862) (-4079.057) * (-4070.766) (-4068.995) [-4061.101] (-4069.991) -- 0:09:21
398000 -- [-4076.215] (-4064.474) (-4068.253) (-4074.480) * [-4068.786] (-4080.731) (-4067.319) (-4084.211) -- 0:09:21
399000 -- [-4065.572] (-4076.262) (-4074.027) (-4079.093) * [-4067.438] (-4064.484) (-4067.703) (-4071.953) -- 0:09:20
400000 -- [-4060.901] (-4064.365) (-4079.593) (-4087.948) * (-4088.261) (-4071.909) [-4070.970] (-4074.215) -- 0:09:19
Average standard deviation of split frequencies: 0.015981
401000 -- [-4067.286] (-4072.656) (-4077.817) (-4079.299) * (-4067.703) [-4070.695] (-4071.846) (-4062.111) -- 0:09:18
402000 -- (-4083.755) (-4080.315) [-4062.697] (-4064.967) * [-4061.269] (-4090.593) (-4061.410) (-4069.734) -- 0:09:16
403000 -- (-4079.563) (-4067.977) [-4063.209] (-4083.212) * (-4071.577) (-4062.754) [-4057.045] (-4068.963) -- 0:09:15
404000 -- (-4078.762) (-4073.551) [-4073.056] (-4061.039) * [-4072.342] (-4076.630) (-4070.115) (-4086.481) -- 0:09:14
405000 -- (-4077.711) [-4068.045] (-4065.353) (-4074.057) * [-4063.402] (-4086.067) (-4080.257) (-4072.733) -- 0:09:13
Average standard deviation of split frequencies: 0.016395
406000 -- (-4071.736) (-4076.926) [-4084.227] (-4077.594) * (-4074.020) (-4081.787) (-4072.988) [-4071.841] -- 0:09:13
407000 -- (-4067.208) (-4071.805) [-4072.184] (-4083.062) * (-4075.859) (-4077.597) (-4076.056) [-4067.435] -- 0:09:12
408000 -- (-4080.289) (-4067.439) (-4070.592) [-4070.025] * (-4070.860) (-4067.004) [-4074.929] (-4080.919) -- 0:09:11
409000 -- (-4076.459) (-4068.087) [-4066.668] (-4085.503) * [-4065.408] (-4078.929) (-4075.968) (-4062.997) -- 0:09:10
410000 -- (-4077.942) (-4082.448) (-4068.502) [-4066.562] * (-4074.679) [-4065.787] (-4081.742) (-4067.546) -- 0:09:09
Average standard deviation of split frequencies: 0.017697
411000 -- (-4066.096) [-4064.709] (-4066.472) (-4079.057) * (-4074.949) (-4078.132) [-4074.079] (-4078.619) -- 0:09:08
412000 -- (-4067.875) (-4060.143) [-4065.013] (-4075.418) * [-4069.187] (-4071.423) (-4073.294) (-4071.395) -- 0:09:08
413000 -- (-4069.565) (-4065.931) (-4074.590) [-4065.380] * (-4066.589) [-4067.391] (-4071.651) (-4074.888) -- 0:09:05
414000 -- (-4068.336) [-4067.410] (-4073.080) (-4077.377) * (-4072.053) (-4072.909) (-4075.230) [-4059.325] -- 0:09:04
415000 -- (-4063.656) (-4076.603) (-4065.372) [-4067.805] * (-4069.294) (-4069.527) [-4073.188] (-4084.885) -- 0:09:04
Average standard deviation of split frequencies: 0.016951
416000 -- (-4073.033) [-4072.781] (-4067.145) (-4064.606) * (-4078.405) [-4058.788] (-4064.509) (-4068.281) -- 0:09:03
417000 -- (-4083.538) (-4074.950) [-4062.968] (-4077.231) * (-4070.646) (-4080.639) [-4075.911] (-4075.936) -- 0:09:02
418000 -- [-4066.472] (-4070.586) (-4067.394) (-4060.313) * (-4079.155) (-4069.617) (-4064.786) [-4071.153] -- 0:09:01
419000 -- (-4072.626) (-4075.721) [-4058.676] (-4066.419) * [-4070.086] (-4075.080) (-4064.719) (-4064.651) -- 0:09:00
420000 -- (-4072.181) (-4067.367) [-4066.317] (-4075.917) * (-4082.431) (-4068.319) [-4065.594] (-4067.221) -- 0:08:59
Average standard deviation of split frequencies: 0.017556
421000 -- [-4068.533] (-4075.393) (-4069.712) (-4074.360) * [-4068.240] (-4074.385) (-4068.771) (-4079.431) -- 0:08:59
422000 -- (-4069.070) (-4070.429) [-4068.089] (-4083.465) * (-4071.952) (-4081.585) [-4069.119] (-4072.182) -- 0:08:58
423000 -- (-4073.302) (-4064.846) [-4059.700] (-4076.565) * (-4073.157) (-4077.562) (-4061.884) [-4074.058] -- 0:08:57
424000 -- (-4079.986) [-4062.530] (-4066.922) (-4085.427) * [-4072.019] (-4074.567) (-4065.149) (-4074.506) -- 0:08:55
425000 -- (-4083.373) (-4079.170) (-4086.867) [-4064.755] * (-4072.312) (-4075.200) (-4068.401) [-4061.066] -- 0:08:54
Average standard deviation of split frequencies: 0.016599
426000 -- (-4077.861) (-4075.995) [-4067.435] (-4081.611) * (-4075.718) (-4075.268) (-4089.906) [-4063.770] -- 0:08:53
427000 -- (-4069.697) [-4066.540] (-4085.525) (-4075.036) * (-4084.507) [-4062.464] (-4073.779) (-4067.028) -- 0:08:52
428000 -- (-4072.303) (-4076.450) (-4085.827) [-4062.899] * (-4064.889) [-4069.711] (-4071.701) (-4065.492) -- 0:08:51
429000 -- (-4081.083) [-4075.950] (-4078.652) (-4067.530) * (-4072.057) (-4065.574) (-4068.438) [-4072.112] -- 0:08:51
430000 -- (-4074.511) (-4089.178) (-4093.219) [-4066.067] * (-4077.741) (-4071.390) [-4068.975] (-4071.182) -- 0:08:50
Average standard deviation of split frequencies: 0.016328
431000 -- (-4076.065) [-4068.628] (-4074.869) (-4071.903) * [-4071.886] (-4074.605) (-4079.081) (-4085.912) -- 0:08:49
432000 -- (-4072.700) (-4058.649) [-4066.450] (-4072.090) * [-4061.291] (-4081.046) (-4085.786) (-4074.686) -- 0:08:48
433000 -- (-4074.830) (-4064.728) [-4062.230] (-4069.513) * (-4068.577) (-4077.148) [-4067.032] (-4073.409) -- 0:08:47
434000 -- (-4086.160) (-4067.087) [-4071.666] (-4079.753) * (-4075.611) (-4072.268) (-4087.158) [-4070.540] -- 0:08:46
435000 -- [-4074.807] (-4065.682) (-4069.905) (-4069.885) * (-4063.990) (-4075.088) (-4067.508) [-4061.474] -- 0:08:46
Average standard deviation of split frequencies: 0.015182
436000 -- [-4059.956] (-4076.787) (-4065.936) (-4068.853) * (-4062.471) [-4076.014] (-4071.986) (-4078.028) -- 0:08:45
437000 -- (-4066.463) [-4061.882] (-4065.660) (-4075.463) * (-4066.790) (-4071.363) [-4064.644] (-4076.928) -- 0:08:44
438000 -- (-4066.760) (-4072.865) [-4062.996] (-4074.976) * (-4062.890) (-4071.571) (-4091.677) [-4058.796] -- 0:08:43
439000 -- [-4069.292] (-4060.535) (-4068.104) (-4085.149) * (-4078.630) (-4077.012) (-4085.828) [-4059.014] -- 0:08:42
440000 -- (-4073.878) (-4071.780) [-4070.594] (-4066.716) * (-4078.076) (-4065.226) (-4077.743) [-4059.401] -- 0:08:41
Average standard deviation of split frequencies: 0.014486
441000 -- (-4095.498) (-4072.715) [-4070.727] (-4064.802) * [-4070.038] (-4069.459) (-4068.514) (-4082.926) -- 0:08:39
442000 -- (-4074.110) (-4070.219) [-4065.079] (-4063.902) * (-4070.169) [-4067.556] (-4065.996) (-4063.736) -- 0:08:38
443000 -- (-4074.210) (-4086.166) (-4073.617) [-4062.127] * (-4074.084) (-4078.607) (-4075.230) [-4063.734] -- 0:08:38
444000 -- (-4087.417) [-4070.559] (-4085.857) (-4082.057) * (-4077.322) (-4076.601) (-4063.734) [-4069.819] -- 0:08:37
445000 -- (-4075.141) (-4085.583) (-4065.981) [-4063.052] * (-4080.048) (-4076.463) (-4070.091) [-4061.302] -- 0:08:36
Average standard deviation of split frequencies: 0.014974
446000 -- [-4067.728] (-4076.290) (-4077.437) (-4072.939) * [-4074.546] (-4066.806) (-4072.944) (-4069.799) -- 0:08:35
447000 -- (-4075.996) (-4062.755) [-4075.890] (-4070.272) * (-4069.137) (-4077.995) [-4082.811] (-4071.302) -- 0:08:34
448000 -- (-4071.297) (-4074.674) (-4060.777) [-4067.834] * (-4068.519) [-4070.557] (-4085.156) (-4075.152) -- 0:08:33
449000 -- [-4063.765] (-4073.153) (-4060.452) (-4066.118) * [-4075.104] (-4065.863) (-4085.915) (-4064.769) -- 0:08:32
450000 -- [-4081.841] (-4080.537) (-4072.903) (-4084.485) * (-4074.906) (-4070.913) [-4067.947] (-4067.568) -- 0:08:32
Average standard deviation of split frequencies: 0.015429
451000 -- (-4068.883) [-4070.809] (-4080.619) (-4075.870) * (-4074.741) [-4069.753] (-4079.270) (-4067.614) -- 0:08:31
452000 -- (-4067.926) [-4063.530] (-4068.861) (-4084.305) * (-4077.925) (-4071.009) (-4086.673) [-4071.912] -- 0:08:30
453000 -- (-4085.577) (-4069.218) [-4068.312] (-4071.850) * [-4082.326] (-4077.288) (-4076.498) (-4075.681) -- 0:08:29
454000 -- (-4074.520) (-4078.655) (-4071.465) [-4064.305] * [-4071.502] (-4069.946) (-4068.795) (-4076.313) -- 0:08:28
455000 -- (-4072.019) [-4064.854] (-4063.798) (-4072.920) * (-4077.161) [-4073.321] (-4070.662) (-4078.237) -- 0:08:26
Average standard deviation of split frequencies: 0.015894
456000 -- [-4073.192] (-4070.027) (-4100.319) (-4066.387) * (-4081.477) (-4076.218) (-4060.964) [-4076.276] -- 0:08:25
457000 -- [-4068.809] (-4073.478) (-4065.086) (-4091.579) * [-4067.107] (-4074.624) (-4072.045) (-4072.136) -- 0:08:24
458000 -- (-4077.365) [-4061.482] (-4072.785) (-4075.071) * (-4068.449) (-4075.515) [-4073.507] (-4065.069) -- 0:08:24
459000 -- (-4067.142) (-4076.740) [-4064.326] (-4067.015) * (-4084.163) [-4075.091] (-4064.375) (-4074.465) -- 0:08:23
460000 -- (-4070.275) (-4079.134) [-4066.064] (-4066.354) * (-4071.427) (-4075.547) (-4074.397) [-4069.765] -- 0:08:22
Average standard deviation of split frequencies: 0.015136
461000 -- (-4071.068) (-4079.847) [-4077.036] (-4071.061) * [-4060.669] (-4080.477) (-4069.776) (-4070.432) -- 0:08:21
462000 -- (-4064.742) (-4061.374) [-4076.196] (-4062.760) * (-4080.827) [-4064.375] (-4069.584) (-4086.196) -- 0:08:21
463000 -- [-4056.824] (-4067.373) (-4072.406) (-4069.167) * [-4076.170] (-4073.092) (-4088.938) (-4067.221) -- 0:08:21
464000 -- [-4061.458] (-4070.088) (-4081.665) (-4072.706) * (-4065.723) (-4079.928) [-4060.514] (-4067.799) -- 0:08:20
465000 -- (-4075.071) [-4073.903] (-4077.343) (-4065.357) * (-4064.485) [-4059.398] (-4071.631) (-4062.395) -- 0:08:19
Average standard deviation of split frequencies: 0.014668
466000 -- (-4073.504) [-4073.380] (-4065.503) (-4070.846) * (-4071.079) (-4073.831) (-4070.655) [-4076.072] -- 0:08:17
467000 -- (-4073.131) [-4071.601] (-4074.011) (-4067.587) * (-4072.262) (-4069.985) (-4066.380) [-4065.729] -- 0:08:16
468000 -- (-4085.214) (-4091.516) (-4069.901) [-4066.521] * (-4079.196) [-4080.060] (-4078.533) (-4082.464) -- 0:08:15
469000 -- (-4075.839) [-4065.952] (-4070.583) (-4077.330) * [-4068.395] (-4070.945) (-4067.389) (-4079.158) -- 0:08:14
470000 -- (-4084.864) [-4072.610] (-4068.045) (-4066.533) * [-4070.304] (-4076.654) (-4071.961) (-4071.985) -- 0:08:13
Average standard deviation of split frequencies: 0.013479
471000 -- [-4065.200] (-4071.237) (-4075.615) (-4090.991) * (-4074.422) (-4070.744) [-4064.023] (-4065.679) -- 0:08:13
472000 -- (-4072.183) (-4066.541) [-4072.427] (-4060.989) * (-4094.677) [-4072.875] (-4062.399) (-4082.003) -- 0:08:12
473000 -- [-4072.004] (-4078.060) (-4082.203) (-4065.552) * (-4083.424) (-4059.979) [-4061.625] (-4084.580) -- 0:08:11
474000 -- [-4065.490] (-4074.201) (-4082.427) (-4076.027) * (-4072.526) [-4063.707] (-4073.397) (-4068.034) -- 0:08:10
475000 -- (-4065.223) [-4073.777] (-4068.411) (-4071.473) * (-4077.088) (-4063.512) (-4057.741) [-4065.551] -- 0:08:09
Average standard deviation of split frequencies: 0.013617
476000 -- (-4062.748) (-4061.236) [-4063.029] (-4071.342) * [-4070.446] (-4064.197) (-4073.299) (-4069.654) -- 0:08:08
477000 -- (-4078.652) [-4072.117] (-4074.195) (-4079.019) * (-4080.023) [-4066.323] (-4086.542) (-4069.283) -- 0:08:07
478000 -- (-4061.431) [-4067.537] (-4072.053) (-4061.314) * (-4076.052) (-4077.607) (-4066.113) [-4075.962] -- 0:08:05
479000 -- [-4061.720] (-4071.414) (-4070.517) (-4082.807) * (-4076.458) (-4068.929) (-4072.241) [-4060.566] -- 0:08:05
480000 -- (-4071.098) (-4084.105) [-4062.651] (-4070.562) * (-4080.427) [-4069.969] (-4080.880) (-4069.765) -- 0:08:04
Average standard deviation of split frequencies: 0.014098
481000 -- (-4075.942) (-4073.101) [-4077.727] (-4078.145) * [-4065.974] (-4078.092) (-4066.059) (-4072.123) -- 0:08:03
482000 -- [-4080.799] (-4074.980) (-4080.850) (-4065.644) * (-4077.813) (-4072.320) (-4084.682) [-4064.766] -- 0:08:02
483000 -- (-4081.641) [-4064.540] (-4076.880) (-4079.979) * [-4073.177] (-4068.460) (-4088.326) (-4072.767) -- 0:08:01
484000 -- (-4070.604) (-4060.492) [-4070.228] (-4069.968) * [-4076.489] (-4069.898) (-4065.897) (-4064.842) -- 0:08:00
485000 -- (-4066.737) (-4074.781) (-4078.814) [-4060.490] * (-4085.787) (-4084.069) (-4081.459) [-4061.306] -- 0:07:59
Average standard deviation of split frequencies: 0.013620
486000 -- (-4079.343) [-4068.293] (-4087.211) (-4073.883) * [-4075.259] (-4070.270) (-4066.848) (-4069.923) -- 0:07:59
487000 -- (-4076.803) (-4088.649) (-4083.777) [-4071.079] * (-4073.192) [-4072.153] (-4070.829) (-4070.302) -- 0:07:58
488000 -- (-4073.193) (-4072.356) (-4063.176) [-4063.434] * (-4073.522) (-4064.091) [-4058.686] (-4068.400) -- 0:07:57
489000 -- (-4082.621) (-4061.544) [-4060.740] (-4068.139) * (-4073.736) (-4067.948) [-4066.400] (-4068.184) -- 0:07:55
490000 -- (-4065.053) (-4079.825) (-4066.297) [-4063.092] * (-4072.215) (-4064.737) (-4073.877) [-4083.012] -- 0:07:54
Average standard deviation of split frequencies: 0.013410
491000 -- (-4094.998) (-4062.460) [-4073.210] (-4076.927) * (-4076.325) [-4072.636] (-4064.237) (-4080.038) -- 0:07:53
492000 -- (-4072.611) (-4078.956) (-4072.646) [-4066.186] * (-4080.854) (-4075.969) [-4061.856] (-4069.810) -- 0:07:52
493000 -- [-4068.758] (-4079.955) (-4071.465) (-4078.287) * (-4065.084) (-4063.768) [-4077.441] (-4073.950) -- 0:07:52
494000 -- (-4068.229) (-4074.715) (-4069.845) [-4063.626] * (-4068.293) (-4083.695) [-4057.084] (-4069.604) -- 0:07:51
495000 -- (-4067.161) [-4071.457] (-4061.548) (-4077.803) * (-4066.922) (-4078.042) [-4067.105] (-4077.572) -- 0:07:50
Average standard deviation of split frequencies: 0.013623
496000 -- (-4083.248) [-4067.424] (-4074.184) (-4080.887) * (-4082.581) (-4076.315) (-4067.365) [-4071.003] -- 0:07:49
497000 -- (-4078.792) (-4066.339) [-4064.328] (-4076.191) * (-4087.133) (-4076.593) (-4078.547) [-4078.949] -- 0:07:48
498000 -- [-4071.468] (-4071.903) (-4074.432) (-4070.400) * (-4077.172) (-4077.549) [-4060.012] (-4071.991) -- 0:07:47
499000 -- (-4062.456) (-4067.762) (-4076.798) [-4074.699] * (-4061.135) (-4072.270) [-4063.301] (-4065.696) -- 0:07:46
500000 -- (-4089.049) (-4078.330) [-4069.440] (-4066.513) * (-4067.971) (-4072.490) [-4066.340] (-4068.822) -- 0:07:45
Average standard deviation of split frequencies: 0.013221
501000 -- [-4069.476] (-4064.856) (-4066.958) (-4087.538) * (-4080.195) [-4065.625] (-4070.087) (-4068.218) -- 0:07:44
502000 -- (-4069.836) [-4069.503] (-4080.487) (-4065.296) * [-4061.571] (-4070.969) (-4074.345) (-4068.634) -- 0:07:43
503000 -- [-4063.067] (-4071.011) (-4074.845) (-4082.511) * [-4061.117] (-4065.043) (-4074.343) (-4067.519) -- 0:07:42
504000 -- (-4080.065) (-4071.992) (-4068.152) [-4072.221] * (-4065.846) (-4072.602) [-4068.427] (-4082.936) -- 0:07:41
505000 -- (-4075.347) (-4075.724) (-4081.010) [-4064.017] * [-4062.809] (-4073.389) (-4055.688) (-4065.851) -- 0:07:40
Average standard deviation of split frequencies: 0.013276
506000 -- (-4069.515) [-4067.493] (-4086.637) (-4076.459) * (-4071.202) (-4071.601) [-4069.756] (-4078.733) -- 0:07:39
507000 -- (-4074.270) (-4068.210) (-4070.902) [-4065.697] * (-4065.257) (-4075.160) [-4067.413] (-4077.622) -- 0:07:38
508000 -- (-4074.548) (-4067.414) (-4082.232) [-4067.224] * (-4065.858) (-4083.237) (-4064.943) [-4073.749] -- 0:07:38
509000 -- (-4064.209) (-4072.440) (-4071.034) [-4075.464] * (-4074.699) (-4072.967) [-4073.080] (-4070.847) -- 0:07:37
510000 -- [-4066.685] (-4076.458) (-4062.061) (-4064.802) * (-4083.913) (-4065.570) [-4069.239] (-4077.123) -- 0:07:36
Average standard deviation of split frequencies: 0.012693
511000 -- (-4066.938) [-4064.030] (-4079.895) (-4064.691) * (-4079.651) (-4066.306) (-4072.641) [-4065.681] -- 0:07:34
512000 -- (-4074.303) (-4070.155) (-4085.085) [-4074.451] * (-4075.982) (-4072.723) (-4063.161) [-4065.333] -- 0:07:33
513000 -- (-4077.494) (-4064.284) (-4066.698) [-4063.807] * (-4057.735) (-4073.735) (-4064.881) [-4086.331] -- 0:07:32
514000 -- [-4075.839] (-4067.598) (-4064.019) (-4069.909) * (-4071.758) (-4067.615) [-4064.781] (-4070.895) -- 0:07:31
515000 -- (-4085.536) [-4066.510] (-4068.226) (-4069.180) * [-4063.976] (-4066.417) (-4075.144) (-4085.296) -- 0:07:31
Average standard deviation of split frequencies: 0.011762
516000 -- (-4077.874) (-4080.124) (-4076.198) [-4064.454] * (-4075.490) [-4056.766] (-4056.811) (-4100.722) -- 0:07:30
517000 -- (-4077.549) (-4068.512) [-4067.141] (-4065.234) * (-4084.174) [-4071.897] (-4068.941) (-4078.837) -- 0:07:29
518000 -- (-4081.422) (-4072.707) [-4070.140] (-4067.461) * (-4089.336) [-4070.603] (-4071.369) (-4068.582) -- 0:07:28
519000 -- (-4073.597) (-4072.134) (-4085.561) [-4072.031] * (-4075.432) (-4070.710) [-4068.924] (-4084.679) -- 0:07:27
520000 -- (-4075.320) (-4066.471) [-4069.505] (-4069.840) * (-4064.923) (-4082.815) [-4071.247] (-4065.048) -- 0:07:26
Average standard deviation of split frequencies: 0.012449
521000 -- (-4072.376) (-4070.090) (-4073.348) [-4058.279] * [-4062.021] (-4083.425) (-4068.380) (-4069.845) -- 0:07:24
522000 -- [-4066.659] (-4079.676) (-4073.980) (-4074.045) * (-4073.709) [-4071.676] (-4071.626) (-4069.390) -- 0:07:24
523000 -- (-4079.171) (-4063.530) (-4073.359) [-4065.942] * (-4071.146) (-4072.072) [-4079.438] (-4076.690) -- 0:07:23
524000 -- (-4076.038) (-4064.366) [-4068.508] (-4076.924) * [-4076.039] (-4065.176) (-4068.370) (-4088.202) -- 0:07:22
525000 -- (-4071.391) [-4071.356] (-4079.402) (-4082.140) * (-4084.832) (-4067.735) (-4064.073) [-4078.002] -- 0:07:21
Average standard deviation of split frequencies: 0.011837
526000 -- [-4062.812] (-4060.401) (-4077.615) (-4083.000) * [-4077.149] (-4074.580) (-4072.287) (-4080.853) -- 0:07:20
527000 -- (-4087.419) (-4069.023) (-4079.728) [-4078.720] * [-4073.359] (-4073.636) (-4090.914) (-4076.335) -- 0:07:19
528000 -- (-4075.411) (-4072.345) (-4074.603) [-4064.191] * (-4074.364) [-4063.941] (-4073.003) (-4067.892) -- 0:07:18
529000 -- (-4060.725) (-4066.679) (-4076.219) [-4064.252] * (-4062.683) (-4074.321) (-4075.785) [-4068.585] -- 0:07:18
530000 -- (-4065.928) (-4062.576) (-4073.201) [-4072.752] * (-4075.696) [-4071.010] (-4084.384) (-4075.085) -- 0:07:17
Average standard deviation of split frequencies: 0.011215
531000 -- (-4070.358) (-4071.370) (-4071.342) [-4071.443] * (-4075.271) (-4067.156) (-4071.997) [-4072.732] -- 0:07:16
532000 -- [-4074.461] (-4078.833) (-4074.026) (-4070.528) * (-4075.709) (-4079.329) [-4073.200] (-4074.917) -- 0:07:15
533000 -- (-4073.760) (-4065.573) (-4070.770) [-4063.139] * (-4066.711) (-4070.062) [-4065.636] (-4082.247) -- 0:07:13
534000 -- (-4063.118) [-4073.253] (-4084.201) (-4069.035) * (-4082.907) (-4072.721) [-4076.346] (-4074.620) -- 0:07:12
535000 -- [-4057.654] (-4081.267) (-4071.466) (-4066.230) * (-4069.312) [-4068.516] (-4073.026) (-4070.047) -- 0:07:11
Average standard deviation of split frequencies: 0.011030
536000 -- (-4077.264) [-4077.747] (-4065.605) (-4063.355) * (-4062.788) (-4068.045) (-4072.698) [-4073.309] -- 0:07:11
537000 -- (-4081.802) (-4080.502) [-4061.234] (-4073.897) * (-4086.337) (-4080.982) [-4061.300] (-4063.273) -- 0:07:10
538000 -- (-4070.794) (-4075.854) [-4066.738] (-4076.034) * [-4072.255] (-4067.094) (-4065.603) (-4082.804) -- 0:07:09
539000 -- (-4084.627) (-4069.981) (-4074.401) [-4066.275] * (-4067.185) [-4057.380] (-4059.822) (-4072.253) -- 0:07:08
540000 -- (-4071.646) [-4062.402] (-4074.564) (-4068.640) * (-4078.960) (-4076.229) (-4073.152) [-4067.897] -- 0:07:07
Average standard deviation of split frequencies: 0.011044
541000 -- [-4077.418] (-4074.424) (-4079.321) (-4060.300) * (-4067.865) (-4087.384) (-4068.778) [-4066.114] -- 0:07:06
542000 -- [-4067.017] (-4076.449) (-4070.201) (-4065.380) * (-4071.036) (-4072.394) [-4070.781] (-4063.790) -- 0:07:05
543000 -- (-4070.201) (-4077.770) (-4074.040) [-4069.082] * (-4075.117) (-4069.761) [-4068.788] (-4071.484) -- 0:07:05
544000 -- [-4060.611] (-4062.947) (-4087.139) (-4070.357) * (-4067.643) (-4067.861) [-4064.263] (-4071.990) -- 0:07:04
545000 -- (-4071.662) (-4083.193) [-4065.157] (-4068.352) * (-4082.057) [-4071.928] (-4068.762) (-4068.305) -- 0:07:02
Average standard deviation of split frequencies: 0.011116
546000 -- (-4067.078) (-4067.917) [-4064.717] (-4062.578) * [-4063.005] (-4069.997) (-4084.245) (-4077.727) -- 0:07:01
547000 -- (-4065.829) (-4068.176) [-4070.817] (-4081.664) * (-4063.486) (-4074.615) [-4056.532] (-4068.213) -- 0:07:00
548000 -- (-4059.722) [-4066.453] (-4062.910) (-4071.665) * (-4080.630) (-4091.601) [-4072.046] (-4079.696) -- 0:06:59
549000 -- (-4080.597) (-4073.005) (-4064.473) [-4068.699] * (-4087.378) (-4065.346) [-4075.935] (-4079.456) -- 0:06:58
550000 -- [-4067.386] (-4093.215) (-4067.671) (-4072.609) * (-4077.654) (-4063.085) (-4075.057) [-4062.003] -- 0:06:58
Average standard deviation of split frequencies: 0.010594
551000 -- (-4078.673) [-4074.729] (-4075.650) (-4073.389) * (-4075.830) [-4070.063] (-4068.548) (-4067.157) -- 0:06:57
552000 -- [-4064.705] (-4072.218) (-4068.283) (-4073.336) * (-4072.546) [-4067.969] (-4073.056) (-4079.211) -- 0:06:56
553000 -- (-4072.917) [-4071.192] (-4072.193) (-4062.237) * [-4076.587] (-4057.780) (-4070.202) (-4082.515) -- 0:06:55
554000 -- (-4074.436) (-4081.822) (-4077.315) [-4063.249] * (-4066.219) (-4077.687) (-4073.584) [-4067.023] -- 0:06:54
555000 -- (-4073.522) (-4065.941) [-4072.470] (-4068.457) * (-4069.499) [-4068.099] (-4077.001) (-4069.823) -- 0:06:53
Average standard deviation of split frequencies: 0.010527
556000 -- (-4067.294) [-4071.092] (-4066.560) (-4075.621) * (-4062.174) [-4076.173] (-4083.289) (-4070.594) -- 0:06:52
557000 -- (-4071.516) (-4076.175) [-4061.981] (-4067.999) * (-4078.609) (-4084.228) [-4062.523] (-4079.843) -- 0:06:51
558000 -- [-4065.453] (-4072.576) (-4062.279) (-4073.926) * [-4069.016] (-4066.003) (-4067.103) (-4071.728) -- 0:06:50
559000 -- (-4062.537) (-4076.707) (-4065.613) [-4065.682] * (-4070.555) (-4065.158) [-4064.586] (-4071.901) -- 0:06:49
560000 -- [-4071.262] (-4073.632) (-4082.936) (-4067.535) * (-4075.177) (-4072.580) [-4064.140] (-4089.897) -- 0:06:48
Average standard deviation of split frequencies: 0.010265
561000 -- (-4080.184) [-4061.073] (-4075.378) (-4069.311) * (-4066.775) (-4083.667) (-4063.161) [-4070.782] -- 0:06:47
562000 -- (-4062.133) (-4062.891) (-4068.461) [-4073.685] * (-4075.682) (-4079.767) [-4073.296] (-4064.498) -- 0:06:46
563000 -- [-4061.175] (-4064.243) (-4080.215) (-4070.602) * [-4061.810] (-4073.361) (-4068.830) (-4075.988) -- 0:06:45
564000 -- (-4072.661) [-4066.805] (-4064.815) (-4077.747) * (-4066.777) (-4071.472) [-4070.732] (-4072.574) -- 0:06:45
565000 -- [-4069.565] (-4086.703) (-4066.954) (-4077.812) * (-4069.055) (-4069.395) [-4071.127] (-4077.896) -- 0:06:44
Average standard deviation of split frequencies: 0.009335
566000 -- (-4064.517) (-4086.305) [-4079.594] (-4061.728) * (-4074.846) [-4072.729] (-4056.279) (-4076.530) -- 0:06:43
567000 -- (-4066.175) (-4075.798) (-4083.286) [-4067.607] * (-4066.046) (-4065.885) [-4067.591] (-4071.755) -- 0:06:42
568000 -- (-4084.363) [-4067.147] (-4073.126) (-4063.039) * [-4066.958] (-4067.872) (-4066.872) (-4071.706) -- 0:06:41
569000 -- [-4069.047] (-4071.495) (-4071.970) (-4072.470) * [-4069.981] (-4074.007) (-4076.350) (-4065.570) -- 0:06:40
570000 -- (-4073.604) (-4068.024) (-4069.622) [-4071.812] * (-4063.665) (-4079.723) (-4068.809) [-4073.541] -- 0:06:39
Average standard deviation of split frequencies: 0.009121
571000 -- (-4069.861) (-4066.853) [-4071.803] (-4063.107) * (-4075.330) (-4082.194) (-4070.372) [-4055.586] -- 0:06:38
572000 -- (-4077.017) [-4065.247] (-4083.699) (-4067.790) * (-4068.075) (-4092.612) [-4071.452] (-4078.325) -- 0:06:38
573000 -- (-4063.421) (-4076.891) [-4065.063] (-4073.351) * [-4074.029] (-4081.698) (-4077.952) (-4070.921) -- 0:06:37
574000 -- [-4061.073] (-4064.185) (-4079.438) (-4068.897) * [-4070.222] (-4073.385) (-4073.030) (-4056.844) -- 0:06:36
575000 -- [-4070.917] (-4073.448) (-4081.228) (-4059.920) * [-4076.321] (-4069.500) (-4079.547) (-4071.736) -- 0:06:35
Average standard deviation of split frequencies: 0.008934
576000 -- (-4079.512) (-4072.358) [-4061.255] (-4062.366) * [-4061.544] (-4070.903) (-4077.312) (-4069.371) -- 0:06:34
577000 -- [-4074.153] (-4068.018) (-4066.869) (-4081.242) * (-4065.175) (-4080.960) (-4079.537) [-4061.154] -- 0:06:33
578000 -- (-4067.787) (-4071.882) (-4075.171) [-4060.804] * (-4071.459) (-4068.925) [-4063.341] (-4071.181) -- 0:06:32
579000 -- (-4075.476) (-4079.162) (-4074.472) [-4066.141] * (-4070.210) [-4058.590] (-4071.270) (-4073.315) -- 0:06:31
580000 -- [-4066.602] (-4070.326) (-4066.639) (-4067.705) * (-4063.725) [-4064.257] (-4085.199) (-4072.600) -- 0:06:30
Average standard deviation of split frequencies: 0.008321
581000 -- (-4065.097) [-4070.664] (-4069.365) (-4064.863) * (-4067.029) (-4077.296) [-4061.051] (-4071.860) -- 0:06:29
582000 -- (-4080.942) [-4063.619] (-4071.231) (-4074.118) * (-4062.637) [-4063.403] (-4070.553) (-4086.333) -- 0:06:29
583000 -- (-4074.755) (-4066.990) (-4064.718) [-4060.840] * (-4068.518) [-4075.274] (-4072.656) (-4081.784) -- 0:06:28
584000 -- (-4074.142) [-4075.719] (-4061.475) (-4072.249) * (-4073.892) [-4070.951] (-4071.652) (-4082.673) -- 0:06:26
585000 -- (-4071.747) [-4074.980] (-4077.650) (-4063.722) * (-4071.780) [-4066.638] (-4066.376) (-4080.388) -- 0:06:25
Average standard deviation of split frequencies: 0.007642
586000 -- (-4078.060) (-4082.634) [-4067.521] (-4077.307) * [-4060.270] (-4082.669) (-4070.711) (-4080.710) -- 0:06:25
587000 -- (-4074.473) (-4061.853) (-4065.915) [-4059.913] * (-4073.782) (-4073.871) [-4065.392] (-4074.045) -- 0:06:24
588000 -- [-4075.482] (-4073.301) (-4071.214) (-4069.311) * [-4065.284] (-4063.583) (-4062.919) (-4076.642) -- 0:06:23
589000 -- (-4078.136) (-4069.378) [-4073.480] (-4072.261) * (-4073.788) [-4067.246] (-4063.712) (-4082.231) -- 0:06:22
590000 -- (-4062.407) (-4077.318) [-4075.877] (-4086.249) * [-4063.904] (-4054.807) (-4071.859) (-4083.363) -- 0:06:21
Average standard deviation of split frequencies: 0.007083
591000 -- (-4082.284) (-4071.435) (-4085.050) [-4071.458] * [-4067.055] (-4083.124) (-4072.424) (-4074.740) -- 0:06:20
592000 -- (-4068.440) (-4075.843) (-4068.721) [-4069.332] * (-4069.073) (-4073.813) [-4068.574] (-4086.755) -- 0:06:19
593000 -- (-4076.432) (-4083.169) [-4061.637] (-4075.903) * (-4075.035) [-4070.277] (-4071.779) (-4080.905) -- 0:06:18
594000 -- (-4077.495) (-4080.951) (-4070.828) [-4073.138] * [-4065.546] (-4069.538) (-4072.905) (-4076.804) -- 0:06:17
595000 -- (-4070.995) (-4075.329) (-4067.666) [-4065.678] * (-4068.917) [-4086.121] (-4069.839) (-4078.204) -- 0:06:17
Average standard deviation of split frequencies: 0.007217
596000 -- [-4067.070] (-4069.961) (-4075.547) (-4069.882) * [-4062.656] (-4079.286) (-4075.524) (-4063.108) -- 0:06:16
597000 -- (-4082.733) (-4069.641) [-4067.984] (-4069.657) * (-4070.793) [-4069.577] (-4068.527) (-4066.507) -- 0:06:15
598000 -- (-4071.915) [-4063.613] (-4059.118) (-4071.381) * (-4075.813) [-4075.865] (-4069.037) (-4091.004) -- 0:06:14
599000 -- (-4078.738) (-4080.152) [-4065.586] (-4073.042) * (-4077.143) (-4079.857) (-4072.536) [-4062.107] -- 0:06:12
600000 -- (-4074.198) (-4078.477) (-4081.437) [-4069.992] * (-4079.523) [-4061.262] (-4065.531) (-4068.566) -- 0:06:12
Average standard deviation of split frequencies: 0.007161
601000 -- [-4068.357] (-4084.093) (-4066.325) (-4071.694) * [-4078.281] (-4074.298) (-4072.662) (-4071.784) -- 0:06:11
602000 -- (-4074.832) [-4073.554] (-4072.973) (-4062.564) * (-4068.108) [-4072.680] (-4067.957) (-4095.015) -- 0:06:10
603000 -- (-4069.305) (-4079.970) [-4062.838] (-4076.280) * (-4073.057) (-4086.641) [-4071.707] (-4076.679) -- 0:06:09
604000 -- (-4078.998) [-4066.054] (-4071.425) (-4084.575) * (-4073.677) [-4075.202] (-4071.342) (-4070.551) -- 0:06:08
605000 -- (-4069.103) (-4069.042) [-4064.575] (-4069.220) * (-4074.381) [-4078.487] (-4077.525) (-4078.520) -- 0:06:07
Average standard deviation of split frequencies: 0.007617
606000 -- [-4072.867] (-4064.475) (-4064.031) (-4074.981) * [-4062.530] (-4082.867) (-4072.906) (-4074.954) -- 0:06:06
607000 -- [-4061.321] (-4092.344) (-4075.416) (-4063.372) * (-4065.702) (-4080.374) (-4077.523) [-4067.120] -- 0:06:05
608000 -- (-4076.450) (-4069.328) [-4062.106] (-4090.306) * (-4069.470) [-4064.573] (-4069.811) (-4079.695) -- 0:06:04
609000 -- (-4076.002) [-4064.824] (-4072.742) (-4083.023) * (-4065.449) (-4074.882) (-4070.223) [-4067.801] -- 0:06:04
610000 -- (-4084.216) (-4066.121) [-4070.668] (-4082.862) * (-4069.069) [-4065.656] (-4070.495) (-4074.046) -- 0:06:02
Average standard deviation of split frequencies: 0.007494
611000 -- (-4061.698) (-4081.634) (-4068.212) [-4072.605] * (-4082.771) [-4063.185] (-4071.299) (-4061.667) -- 0:06:01
612000 -- (-4065.502) [-4077.830] (-4071.623) (-4076.969) * (-4076.241) (-4074.308) (-4075.485) [-4066.491] -- 0:06:00
613000 -- (-4064.936) (-4066.177) [-4071.765] (-4075.091) * [-4075.153] (-4068.877) (-4077.291) (-4082.747) -- 0:05:59
614000 -- (-4082.077) (-4069.718) [-4059.523] (-4079.743) * [-4061.226] (-4069.439) (-4072.093) (-4061.640) -- 0:05:58
615000 -- [-4071.731] (-4078.680) (-4078.901) (-4066.215) * [-4066.911] (-4066.838) (-4075.766) (-4083.004) -- 0:05:58
Average standard deviation of split frequencies: 0.006951
616000 -- (-4067.723) (-4085.836) [-4068.659] (-4075.523) * (-4070.786) [-4060.774] (-4081.083) (-4075.210) -- 0:05:57
617000 -- (-4067.824) (-4082.796) [-4065.090] (-4066.796) * (-4070.925) (-4067.452) [-4061.324] (-4090.819) -- 0:05:56
618000 -- [-4062.716] (-4088.060) (-4069.697) (-4078.150) * (-4079.635) (-4066.359) (-4076.842) [-4069.579] -- 0:05:55
619000 -- (-4081.818) [-4061.074] (-4078.012) (-4067.798) * [-4067.536] (-4075.231) (-4097.322) (-4061.909) -- 0:05:54
620000 -- [-4062.440] (-4075.751) (-4074.170) (-4067.173) * (-4078.160) (-4075.613) (-4074.665) [-4062.785] -- 0:05:53
Average standard deviation of split frequencies: 0.006931
621000 -- (-4076.002) (-4076.476) [-4076.903] (-4066.608) * (-4079.739) (-4072.111) [-4066.714] (-4062.091) -- 0:05:52
622000 -- (-4073.859) (-4068.209) [-4062.916] (-4065.087) * [-4070.195] (-4074.218) (-4075.102) (-4078.180) -- 0:05:51
623000 -- (-4078.751) (-4073.888) (-4064.806) [-4078.197] * [-4064.324] (-4068.906) (-4082.174) (-4070.723) -- 0:05:50
624000 -- (-4071.663) (-4068.683) [-4072.984] (-4068.999) * (-4074.556) [-4060.538] (-4089.704) (-4069.571) -- 0:05:49
625000 -- (-4063.760) [-4062.308] (-4071.575) (-4067.875) * (-4068.482) [-4063.344] (-4082.820) (-4070.563) -- 0:05:48
Average standard deviation of split frequencies: 0.006840
626000 -- [-4073.828] (-4078.204) (-4072.020) (-4062.907) * (-4069.748) (-4061.601) (-4082.256) [-4063.764] -- 0:05:47
627000 -- (-4068.572) [-4067.327] (-4074.137) (-4072.065) * (-4078.324) [-4058.464] (-4085.753) (-4070.504) -- 0:05:46
628000 -- (-4065.018) [-4072.133] (-4081.711) (-4067.342) * [-4069.319] (-4070.858) (-4087.329) (-4062.927) -- 0:05:45
629000 -- (-4071.136) (-4070.215) (-4061.721) [-4062.465] * (-4069.355) (-4079.530) (-4072.761) [-4063.934] -- 0:05:45
630000 -- (-4074.389) [-4067.163] (-4077.663) (-4063.605) * (-4073.546) (-4068.710) [-4067.111] (-4081.755) -- 0:05:44
Average standard deviation of split frequencies: 0.007039
631000 -- [-4070.606] (-4072.633) (-4075.163) (-4075.109) * (-4089.076) [-4064.644] (-4068.498) (-4062.352) -- 0:05:43
632000 -- (-4070.932) (-4065.284) (-4068.884) [-4076.575] * (-4071.698) (-4078.715) [-4060.512] (-4077.218) -- 0:05:42
633000 -- (-4074.144) [-4069.476] (-4066.491) (-4071.432) * (-4082.002) (-4070.002) [-4073.951] (-4073.489) -- 0:05:41
634000 -- (-4074.965) (-4076.300) (-4072.592) [-4070.956] * (-4062.513) (-4076.113) [-4081.089] (-4076.903) -- 0:05:40
635000 -- [-4070.481] (-4067.674) (-4067.609) (-4070.021) * (-4071.541) (-4073.007) [-4057.985] (-4063.362) -- 0:05:39
Average standard deviation of split frequencies: 0.007196
636000 -- (-4069.479) (-4073.541) (-4077.300) [-4071.237] * (-4086.045) (-4078.510) [-4065.339] (-4072.899) -- 0:05:38
637000 -- (-4073.537) [-4067.644] (-4074.085) (-4065.889) * (-4068.891) (-4068.087) (-4068.531) [-4068.335] -- 0:05:37
638000 -- (-4087.580) (-4069.465) [-4061.601] (-4072.439) * (-4083.006) (-4068.738) (-4062.624) [-4066.190] -- 0:05:36
639000 -- (-4068.146) [-4069.045] (-4063.183) (-4067.833) * [-4061.963] (-4068.071) (-4075.267) (-4066.130) -- 0:05:35
640000 -- (-4060.779) (-4069.365) [-4062.792] (-4081.514) * [-4065.905] (-4059.644) (-4082.312) (-4080.615) -- 0:05:34
Average standard deviation of split frequencies: 0.007205
641000 -- (-4077.640) (-4068.386) (-4078.489) [-4076.474] * (-4085.151) (-4071.396) [-4061.228] (-4062.336) -- 0:05:33
642000 -- (-4063.531) [-4064.798] (-4082.152) (-4073.066) * [-4076.388] (-4077.385) (-4070.149) (-4074.673) -- 0:05:32
643000 -- (-4076.025) (-4076.035) [-4065.126] (-4076.416) * [-4077.634] (-4069.937) (-4077.938) (-4065.232) -- 0:05:32
644000 -- (-4066.337) [-4067.215] (-4067.487) (-4075.210) * (-4085.660) (-4068.297) [-4060.871] (-4070.279) -- 0:05:30
645000 -- (-4063.703) [-4072.556] (-4066.278) (-4067.273) * (-4070.260) (-4068.884) [-4073.070] (-4071.308) -- 0:05:29
Average standard deviation of split frequencies: 0.007145
646000 -- (-4078.152) (-4069.456) [-4067.237] (-4070.476) * (-4071.265) [-4067.612] (-4065.327) (-4070.291) -- 0:05:28
647000 -- [-4072.376] (-4072.520) (-4069.648) (-4075.152) * (-4074.506) (-4062.797) (-4069.127) [-4067.462] -- 0:05:27
648000 -- (-4074.178) (-4083.617) (-4082.123) [-4071.380] * (-4080.459) (-4070.593) [-4065.364] (-4078.474) -- 0:05:27
649000 -- (-4071.524) (-4071.827) [-4070.942] (-4074.471) * (-4067.284) (-4075.724) [-4067.939] (-4071.951) -- 0:05:26
650000 -- (-4063.756) [-4065.751] (-4066.084) (-4079.947) * [-4081.031] (-4079.847) (-4071.540) (-4078.037) -- 0:05:25
Average standard deviation of split frequencies: 0.007215
651000 -- (-4087.142) (-4068.529) [-4080.154] (-4072.997) * (-4070.272) [-4072.931] (-4071.951) (-4058.656) -- 0:05:24
652000 -- (-4074.645) (-4072.301) (-4074.573) [-4077.249] * (-4070.438) (-4074.471) (-4078.315) [-4066.451] -- 0:05:23
653000 -- (-4064.155) [-4072.402] (-4061.777) (-4080.833) * (-4089.442) (-4068.721) [-4071.655] (-4080.657) -- 0:05:22
654000 -- (-4087.796) [-4070.454] (-4064.337) (-4078.857) * [-4072.825] (-4063.148) (-4079.848) (-4061.819) -- 0:05:21
655000 -- [-4069.943] (-4079.628) (-4078.158) (-4061.121) * (-4068.445) [-4064.117] (-4064.820) (-4074.515) -- 0:05:20
Average standard deviation of split frequencies: 0.006857
656000 -- [-4067.118] (-4072.185) (-4061.194) (-4069.377) * (-4090.733) (-4077.472) (-4070.129) [-4069.337] -- 0:05:19
657000 -- (-4075.350) [-4079.738] (-4076.729) (-4076.035) * (-4078.859) (-4073.438) (-4060.915) [-4061.907] -- 0:05:18
658000 -- (-4077.659) (-4077.405) [-4075.988] (-4075.390) * (-4090.587) [-4072.637] (-4065.652) (-4074.605) -- 0:05:18
659000 -- (-4070.127) (-4079.831) (-4066.302) [-4069.030] * (-4069.471) [-4085.126] (-4076.484) (-4068.916) -- 0:05:17
660000 -- (-4075.413) [-4062.162] (-4089.879) (-4069.864) * [-4071.728] (-4060.514) (-4074.931) (-4071.153) -- 0:05:15
Average standard deviation of split frequencies: 0.006897
661000 -- [-4069.741] (-4072.059) (-4078.972) (-4069.025) * (-4079.072) [-4073.360] (-4074.904) (-4067.320) -- 0:05:14
662000 -- (-4078.554) (-4073.328) (-4078.368) [-4068.649] * (-4064.994) (-4077.844) (-4068.180) [-4073.675] -- 0:05:14
663000 -- (-4074.983) (-4077.784) [-4066.731] (-4066.406) * (-4070.342) [-4071.871] (-4074.838) (-4088.925) -- 0:05:13
664000 -- (-4073.146) (-4071.433) (-4079.763) [-4064.398] * [-4070.769] (-4073.330) (-4071.510) (-4071.947) -- 0:05:12
665000 -- [-4061.848] (-4069.112) (-4079.372) (-4059.769) * [-4066.851] (-4073.848) (-4075.764) (-4070.475) -- 0:05:11
Average standard deviation of split frequencies: 0.006606
666000 -- (-4082.671) [-4068.806] (-4076.881) (-4066.197) * (-4072.842) (-4071.747) (-4070.617) [-4063.592] -- 0:05:10
667000 -- (-4075.560) (-4057.949) (-4066.930) [-4062.005] * (-4064.557) [-4062.195] (-4083.121) (-4071.773) -- 0:05:09
668000 -- (-4080.342) [-4054.742] (-4077.031) (-4074.872) * (-4068.702) [-4071.453] (-4071.304) (-4067.749) -- 0:05:08
669000 -- (-4072.998) (-4068.491) [-4068.592] (-4066.355) * (-4072.561) (-4079.645) (-4073.010) [-4069.996] -- 0:05:07
670000 -- [-4065.424] (-4072.577) (-4064.216) (-4077.595) * (-4066.526) [-4065.614] (-4082.503) (-4065.403) -- 0:05:06
Average standard deviation of split frequencies: 0.006355
671000 -- (-4063.088) (-4077.364) [-4066.302] (-4074.284) * (-4077.639) (-4091.158) (-4078.688) [-4059.968] -- 0:05:05
672000 -- (-4072.108) [-4065.269] (-4066.911) (-4061.535) * (-4079.184) [-4066.203] (-4071.501) (-4067.961) -- 0:05:04
673000 -- (-4072.334) (-4060.436) [-4069.462] (-4072.615) * (-4074.400) [-4069.827] (-4069.017) (-4066.873) -- 0:05:03
674000 -- (-4084.936) [-4067.430] (-4075.453) (-4067.956) * [-4070.814] (-4079.709) (-4067.582) (-4074.635) -- 0:05:02
675000 -- (-4075.846) [-4085.236] (-4072.724) (-4069.524) * (-4072.928) (-4066.461) [-4064.953] (-4077.062) -- 0:05:01
Average standard deviation of split frequencies: 0.006392
676000 -- (-4071.781) (-4075.665) (-4071.682) [-4064.531] * (-4075.303) (-4071.316) [-4067.507] (-4080.501) -- 0:05:00
677000 -- (-4062.643) (-4069.922) [-4062.542] (-4074.170) * (-4069.954) (-4070.197) [-4068.792] (-4062.829) -- 0:05:00
678000 -- (-4066.206) (-4078.772) (-4071.407) [-4070.178] * [-4064.471] (-4067.972) (-4080.965) (-4080.378) -- 0:04:59
679000 -- (-4070.599) [-4062.551] (-4069.331) (-4072.227) * [-4066.157] (-4073.035) (-4084.212) (-4076.341) -- 0:04:58
680000 -- (-4076.385) (-4070.144) [-4066.274] (-4076.482) * [-4077.687] (-4061.407) (-4070.526) (-4075.253) -- 0:04:57
Average standard deviation of split frequencies: 0.006435
681000 -- (-4078.329) [-4062.384] (-4066.220) (-4071.423) * (-4068.866) (-4068.793) [-4071.169] (-4079.645) -- 0:04:56
682000 -- (-4080.412) (-4080.649) (-4067.402) [-4066.263] * (-4069.170) [-4072.285] (-4084.140) (-4072.149) -- 0:04:55
683000 -- (-4070.578) (-4076.398) [-4072.174] (-4075.941) * (-4068.624) (-4066.992) [-4068.687] (-4061.732) -- 0:04:54
684000 -- (-4070.802) (-4074.951) (-4071.205) [-4064.229] * (-4073.958) (-4060.249) [-4064.466] (-4082.045) -- 0:04:53
685000 -- (-4068.635) [-4064.109] (-4063.861) (-4062.309) * (-4073.513) (-4075.566) (-4065.774) [-4073.565] -- 0:04:52
Average standard deviation of split frequencies: 0.007072
686000 -- (-4060.705) [-4066.839] (-4074.689) (-4087.731) * (-4074.022) (-4070.151) [-4068.540] (-4062.905) -- 0:04:52
687000 -- (-4066.486) [-4071.342] (-4088.518) (-4067.471) * (-4072.074) (-4067.229) [-4066.044] (-4069.797) -- 0:04:51
688000 -- (-4079.743) (-4060.157) [-4066.087] (-4064.958) * (-4073.423) (-4081.830) [-4069.869] (-4078.578) -- 0:04:50
689000 -- (-4070.662) (-4083.054) (-4063.253) [-4067.688] * (-4074.308) [-4061.984] (-4071.089) (-4071.509) -- 0:04:49
690000 -- (-4061.851) [-4070.542] (-4069.539) (-4068.414) * [-4072.488] (-4070.663) (-4072.406) (-4077.030) -- 0:04:48
Average standard deviation of split frequencies: 0.006882
691000 -- [-4067.481] (-4079.872) (-4069.094) (-4067.561) * [-4061.498] (-4076.057) (-4070.658) (-4081.141) -- 0:04:47
692000 -- (-4069.794) (-4082.689) [-4062.178] (-4068.656) * (-4066.303) (-4072.364) (-4073.659) [-4075.654] -- 0:04:46
693000 -- (-4080.650) [-4089.463] (-4071.657) (-4080.590) * (-4096.376) [-4077.180] (-4068.745) (-4069.964) -- 0:04:45
694000 -- (-4079.256) (-4073.004) [-4067.214] (-4075.267) * (-4070.637) (-4075.398) [-4069.981] (-4062.485) -- 0:04:44
695000 -- (-4085.253) [-4072.629] (-4061.066) (-4076.232) * (-4086.614) (-4073.805) [-4062.803] (-4077.700) -- 0:04:43
Average standard deviation of split frequencies: 0.006829
696000 -- (-4071.896) (-4060.787) [-4067.280] (-4077.202) * (-4078.580) [-4064.585] (-4071.878) (-4078.432) -- 0:04:42
697000 -- (-4067.499) [-4065.536] (-4069.851) (-4068.527) * (-4071.001) (-4063.936) (-4073.379) [-4058.017] -- 0:04:41
698000 -- (-4065.039) (-4074.166) [-4072.330] (-4074.897) * (-4067.100) (-4068.606) (-4067.510) [-4060.732] -- 0:04:40
699000 -- (-4072.340) (-4078.437) [-4066.609] (-4063.520) * [-4072.466] (-4060.211) (-4081.512) (-4071.754) -- 0:04:39
700000 -- (-4079.836) [-4069.943] (-4067.348) (-4070.317) * (-4074.442) [-4068.851] (-4083.217) (-4086.431) -- 0:04:39
Average standard deviation of split frequencies: 0.006672
701000 -- (-4085.622) (-4071.139) (-4063.575) [-4060.195] * [-4061.713] (-4070.658) (-4083.839) (-4070.479) -- 0:04:38
702000 -- (-4075.698) [-4070.246] (-4083.141) (-4072.000) * [-4065.991] (-4074.755) (-4074.688) (-4069.079) -- 0:04:37
703000 -- (-4061.231) [-4059.298] (-4073.737) (-4073.402) * (-4072.726) (-4075.910) (-4072.748) [-4064.462] -- 0:04:36
704000 -- (-4074.956) [-4066.589] (-4079.309) (-4068.675) * [-4070.877] (-4071.729) (-4070.760) (-4073.411) -- 0:04:34
705000 -- (-4075.730) [-4065.407] (-4073.889) (-4075.103) * (-4062.434) (-4072.977) [-4071.418] (-4071.980) -- 0:04:34
Average standard deviation of split frequencies: 0.006371
706000 -- (-4062.972) (-4077.526) [-4064.278] (-4078.095) * (-4070.157) (-4073.269) (-4080.618) [-4063.755] -- 0:04:33
707000 -- (-4065.975) [-4074.026] (-4075.282) (-4071.918) * [-4061.157] (-4067.766) (-4083.822) (-4074.874) -- 0:04:32
708000 -- [-4062.186] (-4071.575) (-4059.848) (-4061.348) * [-4071.872] (-4073.288) (-4070.819) (-4084.850) -- 0:04:31
709000 -- [-4075.185] (-4072.062) (-4061.949) (-4060.469) * (-4065.039) [-4070.683] (-4065.509) (-4072.608) -- 0:04:30
710000 -- (-4068.038) [-4069.483] (-4064.594) (-4076.964) * (-4065.286) (-4071.946) (-4062.502) [-4067.482] -- 0:04:29
Average standard deviation of split frequencies: 0.006606
711000 -- (-4073.789) (-4077.148) [-4059.232] (-4069.751) * (-4076.929) (-4072.798) (-4064.682) [-4070.670] -- 0:04:28
712000 -- (-4068.108) (-4065.490) [-4077.020] (-4074.656) * (-4075.845) (-4059.863) (-4059.822) [-4070.360] -- 0:04:27
713000 -- (-4074.819) (-4069.660) [-4068.341] (-4066.466) * (-4066.368) [-4065.338] (-4062.521) (-4071.301) -- 0:04:26
714000 -- [-4080.097] (-4088.428) (-4076.347) (-4066.521) * (-4065.842) [-4067.019] (-4074.223) (-4077.000) -- 0:04:25
715000 -- (-4066.809) (-4076.670) [-4072.064] (-4064.906) * (-4083.521) [-4080.745] (-4069.817) (-4066.307) -- 0:04:24
Average standard deviation of split frequencies: 0.006968
716000 -- [-4068.457] (-4067.920) (-4079.233) (-4070.159) * (-4070.737) (-4071.040) [-4070.572] (-4078.622) -- 0:04:23
717000 -- (-4081.884) [-4067.288] (-4083.459) (-4069.674) * (-4074.561) (-4066.989) [-4070.207] (-4074.192) -- 0:04:22
718000 -- (-4079.455) (-4064.064) (-4078.959) [-4070.829] * (-4072.894) (-4075.774) (-4071.439) [-4068.245] -- 0:04:21
719000 -- (-4074.463) (-4067.283) (-4067.928) [-4075.095] * (-4082.284) [-4067.024] (-4069.574) (-4075.349) -- 0:04:21
720000 -- (-4083.232) (-4072.975) [-4069.404] (-4081.509) * (-4069.476) [-4068.742] (-4075.480) (-4062.711) -- 0:04:20
Average standard deviation of split frequencies: 0.007168
721000 -- (-4071.110) (-4075.874) (-4065.195) [-4069.217] * [-4064.842] (-4061.592) (-4069.786) (-4071.149) -- 0:04:19
722000 -- [-4071.544] (-4062.303) (-4074.977) (-4070.285) * [-4065.266] (-4069.154) (-4063.334) (-4082.999) -- 0:04:18
723000 -- (-4076.440) (-4067.907) [-4062.249] (-4071.130) * [-4077.355] (-4088.229) (-4073.727) (-4072.342) -- 0:04:17
724000 -- (-4073.630) (-4074.015) [-4066.992] (-4068.185) * (-4090.453) (-4079.284) (-4083.245) [-4065.403] -- 0:04:16
725000 -- (-4067.662) (-4065.464) [-4072.716] (-4081.704) * (-4080.511) (-4074.459) [-4067.855] (-4080.380) -- 0:04:15
Average standard deviation of split frequencies: 0.007115
726000 -- (-4072.318) [-4071.291] (-4081.795) (-4072.471) * [-4070.276] (-4070.846) (-4067.681) (-4070.834) -- 0:04:14
727000 -- (-4073.319) (-4068.515) [-4062.640] (-4084.522) * [-4070.185] (-4065.377) (-4070.332) (-4073.455) -- 0:04:13
728000 -- [-4069.512] (-4068.616) (-4071.263) (-4073.156) * [-4068.611] (-4087.526) (-4069.135) (-4062.655) -- 0:04:12
729000 -- (-4068.380) [-4070.139] (-4077.380) (-4066.433) * (-4074.966) (-4084.330) (-4075.347) [-4069.069] -- 0:04:11
730000 -- (-4070.101) [-4064.867] (-4061.106) (-4077.243) * (-4075.976) [-4064.996] (-4066.721) (-4058.654) -- 0:04:10
Average standard deviation of split frequencies: 0.007823
731000 -- (-4065.761) (-4072.087) [-4061.800] (-4073.321) * (-4064.467) (-4062.499) [-4063.965] (-4072.035) -- 0:04:09
732000 -- (-4077.509) (-4076.259) [-4069.986] (-4078.752) * (-4067.604) (-4073.257) (-4060.111) [-4074.239] -- 0:04:08
733000 -- (-4082.262) (-4069.573) (-4075.855) [-4077.354] * (-4070.856) (-4081.330) [-4060.480] (-4069.713) -- 0:04:08
734000 -- [-4066.075] (-4075.135) (-4068.231) (-4066.139) * (-4086.005) (-4068.464) [-4069.185] (-4077.599) -- 0:04:07
735000 -- [-4066.979] (-4077.214) (-4075.581) (-4076.522) * (-4063.082) (-4069.992) [-4070.837] (-4071.929) -- 0:04:06
Average standard deviation of split frequencies: 0.008006
736000 -- (-4069.385) (-4062.413) [-4052.972] (-4076.518) * (-4067.463) (-4066.286) [-4072.283] (-4071.398) -- 0:04:05
737000 -- (-4086.722) [-4068.373] (-4064.829) (-4070.341) * (-4074.966) (-4082.118) (-4058.002) [-4074.562] -- 0:04:04
738000 -- (-4076.783) (-4066.400) [-4067.489] (-4077.940) * [-4068.621] (-4075.633) (-4083.453) (-4073.753) -- 0:04:03
739000 -- (-4070.325) (-4059.455) (-4077.098) [-4062.997] * (-4069.600) (-4069.124) [-4081.352] (-4070.074) -- 0:04:02
740000 -- (-4062.005) (-4069.154) (-4085.642) [-4063.698] * (-4077.801) (-4079.632) [-4064.530] (-4084.597) -- 0:04:01
Average standard deviation of split frequencies: 0.007399
741000 -- (-4079.088) (-4075.291) (-4069.336) [-4066.692] * (-4062.995) (-4077.986) [-4080.078] (-4085.404) -- 0:04:00
742000 -- (-4076.913) (-4058.586) [-4068.372] (-4064.017) * (-4081.751) [-4070.365] (-4069.283) (-4079.359) -- 0:03:59
743000 -- (-4076.656) (-4069.332) [-4069.980] (-4061.829) * (-4060.822) (-4072.645) [-4064.304] (-4081.043) -- 0:03:59
744000 -- (-4064.607) (-4071.074) (-4079.356) [-4063.157] * (-4078.398) (-4070.431) (-4059.453) [-4068.255] -- 0:03:58
745000 -- (-4068.929) [-4066.570] (-4067.235) (-4061.928) * [-4061.599] (-4068.981) (-4071.758) (-4074.307) -- 0:03:57
Average standard deviation of split frequencies: 0.007557
746000 -- [-4066.276] (-4075.732) (-4071.330) (-4064.961) * [-4072.065] (-4078.019) (-4080.118) (-4076.118) -- 0:03:56
747000 -- (-4085.448) [-4067.896] (-4069.177) (-4067.601) * [-4073.323] (-4065.408) (-4073.279) (-4072.262) -- 0:03:55
748000 -- (-4069.863) (-4077.243) (-4080.015) [-4067.380] * (-4070.556) (-4067.395) [-4066.185] (-4078.258) -- 0:03:54
749000 -- (-4080.765) [-4067.429] (-4070.160) (-4073.856) * (-4081.123) [-4071.641] (-4075.660) (-4061.783) -- 0:03:53
750000 -- (-4069.071) [-4063.746] (-4073.386) (-4077.723) * (-4083.942) (-4083.250) (-4072.022) [-4062.009] -- 0:03:52
Average standard deviation of split frequencies: 0.007222
751000 -- (-4066.806) [-4068.003] (-4075.417) (-4076.257) * (-4072.574) (-4073.232) [-4068.167] (-4059.582) -- 0:03:51
752000 -- (-4066.810) [-4060.056] (-4072.083) (-4067.768) * (-4069.377) (-4069.068) [-4070.113] (-4074.440) -- 0:03:50
753000 -- [-4068.573] (-4085.365) (-4074.909) (-4077.244) * (-4072.930) (-4069.832) (-4077.705) [-4060.251] -- 0:03:49
754000 -- (-4065.650) [-4064.105] (-4081.653) (-4086.921) * (-4072.126) (-4065.016) (-4069.196) [-4071.686] -- 0:03:48
755000 -- (-4070.604) (-4069.159) (-4076.976) [-4082.457] * (-4071.467) [-4067.856] (-4076.081) (-4077.526) -- 0:03:47
Average standard deviation of split frequencies: 0.006989
756000 -- [-4070.019] (-4075.687) (-4081.518) (-4072.012) * (-4088.469) (-4068.593) (-4084.529) [-4076.371] -- 0:03:46
757000 -- [-4061.371] (-4095.472) (-4072.885) (-4069.028) * [-4066.960] (-4071.356) (-4074.461) (-4072.899) -- 0:03:45
758000 -- (-4083.554) (-4075.250) [-4070.142] (-4063.450) * (-4080.107) [-4058.362] (-4068.365) (-4072.037) -- 0:03:45
759000 -- (-4063.523) [-4067.734] (-4081.484) (-4071.768) * (-4076.629) (-4069.674) (-4072.170) [-4064.703] -- 0:03:44
760000 -- [-4069.701] (-4079.654) (-4071.733) (-4072.076) * (-4063.696) (-4066.506) [-4078.395] (-4079.056) -- 0:03:43
Average standard deviation of split frequencies: 0.006972
761000 -- [-4067.545] (-4075.360) (-4069.768) (-4056.914) * [-4062.980] (-4074.326) (-4071.405) (-4072.975) -- 0:03:42
762000 -- [-4056.356] (-4061.489) (-4074.253) (-4065.492) * (-4079.232) (-4070.907) [-4070.132] (-4073.524) -- 0:03:41
763000 -- [-4067.533] (-4066.242) (-4078.777) (-4079.812) * [-4068.437] (-4073.024) (-4070.492) (-4089.810) -- 0:03:40
764000 -- (-4075.214) (-4069.449) [-4064.142] (-4070.830) * (-4083.943) [-4083.450] (-4073.128) (-4066.366) -- 0:03:39
765000 -- (-4067.982) (-4065.348) (-4079.707) [-4064.550] * (-4066.175) (-4082.148) (-4081.880) [-4071.089] -- 0:03:38
Average standard deviation of split frequencies: 0.007129
766000 -- (-4071.618) (-4078.356) (-4068.493) [-4058.122] * (-4079.158) (-4060.277) (-4068.989) [-4066.718] -- 0:03:37
767000 -- (-4076.158) (-4076.259) (-4074.363) [-4071.405] * (-4066.895) [-4064.036] (-4074.113) (-4075.700) -- 0:03:36
768000 -- [-4056.739] (-4074.410) (-4073.289) (-4064.581) * (-4067.375) (-4074.685) [-4067.566] (-4067.851) -- 0:03:35
769000 -- [-4078.845] (-4092.617) (-4061.442) (-4066.511) * [-4070.326] (-4081.794) (-4081.988) (-4059.334) -- 0:03:35
770000 -- [-4076.357] (-4079.636) (-4066.844) (-4072.483) * (-4077.884) [-4065.888] (-4071.619) (-4069.094) -- 0:03:33
Average standard deviation of split frequencies: 0.006907
771000 -- (-4065.368) (-4078.578) [-4070.550] (-4085.193) * [-4072.004] (-4064.372) (-4076.695) (-4077.898) -- 0:03:32
772000 -- (-4075.203) [-4065.083] (-4080.846) (-4074.831) * (-4078.306) (-4082.172) [-4064.949] (-4068.283) -- 0:03:32
773000 -- (-4070.678) (-4061.932) (-4070.587) [-4070.392] * (-4070.892) [-4073.060] (-4076.878) (-4082.705) -- 0:03:31
774000 -- [-4068.837] (-4074.273) (-4078.455) (-4071.871) * (-4077.745) (-4070.637) (-4066.495) [-4076.720] -- 0:03:30
775000 -- [-4067.315] (-4072.091) (-4070.416) (-4073.116) * (-4067.646) (-4065.301) [-4064.513] (-4065.823) -- 0:03:29
Average standard deviation of split frequencies: 0.006606
776000 -- (-4066.920) [-4068.029] (-4067.293) (-4068.453) * (-4076.202) (-4078.209) (-4066.093) [-4071.128] -- 0:03:28
777000 -- [-4072.437] (-4067.530) (-4068.251) (-4076.954) * (-4072.446) (-4079.471) (-4067.459) [-4070.650] -- 0:03:27
778000 -- (-4073.931) [-4070.517] (-4072.826) (-4073.286) * (-4062.742) (-4084.735) (-4078.378) [-4070.659] -- 0:03:26
779000 -- (-4076.541) [-4060.515] (-4091.364) (-4073.064) * (-4080.785) (-4091.208) (-4074.331) [-4071.227] -- 0:03:25
780000 -- (-4067.138) (-4067.598) (-4078.964) [-4067.340] * (-4075.460) (-4070.580) [-4078.565] (-4068.353) -- 0:03:24
Average standard deviation of split frequencies: 0.006340
781000 -- (-4062.109) [-4077.655] (-4066.581) (-4068.162) * [-4073.905] (-4080.275) (-4073.737) (-4062.692) -- 0:03:23
782000 -- (-4067.175) [-4066.399] (-4069.159) (-4081.990) * (-4071.597) (-4070.167) (-4076.973) [-4066.327] -- 0:03:22
783000 -- [-4066.777] (-4076.763) (-4074.384) (-4069.009) * (-4072.693) [-4071.336] (-4081.309) (-4070.467) -- 0:03:21
784000 -- (-4070.258) (-4066.300) (-4076.739) [-4061.169] * (-4080.050) (-4072.389) [-4075.610] (-4068.502) -- 0:03:20
785000 -- [-4060.165] (-4072.782) (-4071.867) (-4072.485) * (-4065.110) (-4072.092) (-4078.753) [-4067.387] -- 0:03:19
Average standard deviation of split frequencies: 0.006047
786000 -- [-4072.266] (-4071.008) (-4070.524) (-4063.973) * (-4068.895) (-4066.440) (-4081.926) [-4066.857] -- 0:03:19
787000 -- (-4072.757) (-4074.778) [-4070.880] (-4070.583) * (-4079.489) (-4083.045) (-4074.290) [-4066.627] -- 0:03:18
788000 -- (-4070.070) [-4071.398] (-4076.306) (-4078.727) * (-4069.575) [-4068.965] (-4077.695) (-4074.679) -- 0:03:17
789000 -- (-4070.828) (-4073.430) (-4080.952) [-4064.724] * (-4077.305) (-4066.637) (-4066.314) [-4072.669] -- 0:03:16
790000 -- (-4083.168) (-4076.529) (-4087.709) [-4065.150] * [-4066.895] (-4062.370) (-4062.806) (-4087.109) -- 0:03:15
Average standard deviation of split frequencies: 0.005888
791000 -- (-4063.417) (-4075.443) (-4071.173) [-4065.745] * (-4079.807) [-4067.502] (-4066.460) (-4074.913) -- 0:03:14
792000 -- [-4071.136] (-4065.367) (-4083.395) (-4068.010) * (-4069.615) [-4066.464] (-4070.440) (-4071.052) -- 0:03:13
793000 -- (-4065.940) [-4059.854] (-4088.378) (-4065.520) * (-4064.690) (-4065.918) [-4071.634] (-4066.174) -- 0:03:12
794000 -- (-4065.997) [-4070.775] (-4073.020) (-4069.552) * (-4079.065) (-4068.669) (-4071.117) [-4059.856] -- 0:03:11
795000 -- [-4061.790] (-4076.519) (-4069.819) (-4073.829) * (-4075.742) (-4075.170) [-4066.267] (-4075.300) -- 0:03:10
Average standard deviation of split frequencies: 0.006070
796000 -- [-4071.028] (-4078.470) (-4067.610) (-4075.376) * (-4074.413) [-4068.775] (-4075.128) (-4080.459) -- 0:03:09
797000 -- [-4072.214] (-4083.036) (-4064.628) (-4075.358) * [-4059.243] (-4077.011) (-4069.913) (-4081.879) -- 0:03:08
798000 -- [-4064.694] (-4073.478) (-4066.242) (-4075.188) * (-4071.567) (-4083.551) [-4066.015] (-4068.130) -- 0:03:08
799000 -- (-4068.994) (-4070.970) (-4066.693) [-4076.155] * (-4065.023) (-4071.093) [-4068.778] (-4068.810) -- 0:03:06
800000 -- (-4087.186) [-4073.898] (-4063.052) (-4084.284) * (-4071.447) [-4072.434] (-4075.089) (-4075.071) -- 0:03:06
Average standard deviation of split frequencies: 0.005937
801000 -- [-4060.170] (-4070.164) (-4071.283) (-4071.758) * (-4074.116) [-4065.853] (-4079.651) (-4076.343) -- 0:03:05
802000 -- [-4073.819] (-4071.845) (-4080.746) (-4077.224) * [-4064.003] (-4087.356) (-4068.852) (-4070.422) -- 0:03:04
803000 -- (-4064.803) (-4074.294) [-4071.036] (-4081.898) * [-4063.597] (-4085.581) (-4074.111) (-4075.994) -- 0:03:03
804000 -- (-4063.332) (-4077.404) [-4073.870] (-4070.032) * (-4074.373) [-4067.823] (-4070.507) (-4079.900) -- 0:03:02
805000 -- [-4065.727] (-4078.228) (-4069.707) (-4065.681) * (-4070.924) (-4072.747) (-4068.143) [-4062.352] -- 0:03:01
Average standard deviation of split frequencies: 0.005995
806000 -- (-4081.315) (-4068.056) [-4060.636] (-4079.815) * (-4073.451) [-4066.439] (-4074.734) (-4064.751) -- 0:03:00
807000 -- (-4070.194) [-4078.028] (-4075.454) (-4076.155) * (-4068.416) (-4064.385) [-4070.837] (-4067.206) -- 0:02:59
808000 -- (-4067.724) [-4060.569] (-4077.995) (-4067.558) * (-4075.971) (-4073.089) (-4073.796) [-4077.628] -- 0:02:58
809000 -- (-4070.619) [-4058.078] (-4072.398) (-4071.279) * (-4068.347) (-4070.009) [-4075.615] (-4085.266) -- 0:02:57
810000 -- (-4075.137) (-4074.464) (-4073.597) [-4073.007] * (-4078.115) (-4079.676) [-4074.388] (-4072.727) -- 0:02:56
Average standard deviation of split frequencies: 0.005791
811000 -- [-4062.070] (-4069.612) (-4069.751) (-4071.392) * [-4065.532] (-4079.203) (-4068.931) (-4067.492) -- 0:02:55
812000 -- (-4081.859) (-4074.155) [-4066.350] (-4078.839) * (-4082.502) (-4069.835) (-4072.708) [-4066.099] -- 0:02:54
813000 -- (-4077.989) (-4069.570) [-4073.857] (-4076.574) * (-4074.688) (-4075.144) (-4068.636) [-4064.818] -- 0:02:53
814000 -- (-4069.399) (-4066.233) (-4074.809) [-4069.417] * (-4073.256) (-4081.394) [-4073.928] (-4066.329) -- 0:02:52
815000 -- [-4070.362] (-4089.789) (-4080.765) (-4080.011) * [-4071.086] (-4075.299) (-4065.163) (-4074.495) -- 0:02:52
Average standard deviation of split frequencies: 0.005753
816000 -- [-4069.447] (-4080.627) (-4079.163) (-4075.722) * (-4082.474) (-4070.019) [-4064.233] (-4069.861) -- 0:02:51
817000 -- [-4071.593] (-4079.418) (-4081.638) (-4072.377) * (-4077.979) [-4066.081] (-4066.577) (-4065.965) -- 0:02:50
818000 -- (-4068.944) [-4066.333] (-4077.087) (-4063.885) * [-4071.941] (-4067.503) (-4074.339) (-4070.085) -- 0:02:49
819000 -- (-4055.328) [-4076.609] (-4081.756) (-4090.672) * (-4075.267) (-4069.361) [-4066.249] (-4071.047) -- 0:02:48
820000 -- (-4069.746) [-4077.498] (-4069.971) (-4070.498) * (-4070.705) (-4073.135) [-4062.765] (-4066.770) -- 0:02:47
Average standard deviation of split frequencies: 0.006175
821000 -- (-4075.516) [-4064.752] (-4065.297) (-4083.028) * (-4072.819) [-4065.726] (-4079.812) (-4080.761) -- 0:02:46
822000 -- (-4076.049) (-4074.498) [-4072.660] (-4080.842) * (-4072.866) (-4072.464) (-4082.940) [-4058.320] -- 0:02:45
823000 -- (-4072.221) (-4062.284) [-4072.579] (-4068.810) * (-4068.675) [-4066.060] (-4086.902) (-4065.026) -- 0:02:44
824000 -- [-4069.384] (-4062.039) (-4077.604) (-4069.366) * (-4072.904) (-4072.491) [-4078.115] (-4083.684) -- 0:02:43
825000 -- (-4066.627) [-4067.992] (-4078.001) (-4081.792) * (-4073.472) [-4073.870] (-4073.240) (-4082.508) -- 0:02:42
Average standard deviation of split frequencies: 0.005660
826000 -- [-4070.732] (-4059.221) (-4064.062) (-4063.486) * [-4074.304] (-4078.530) (-4072.662) (-4073.142) -- 0:02:41
827000 -- (-4077.225) (-4068.261) [-4066.745] (-4072.508) * (-4068.982) [-4067.540] (-4075.749) (-4067.915) -- 0:02:40
828000 -- (-4080.373) [-4069.782] (-4065.261) (-4080.535) * (-4074.954) (-4074.667) [-4063.260] (-4074.484) -- 0:02:39
829000 -- (-4077.544) (-4075.385) (-4083.580) [-4065.502] * (-4086.319) [-4072.794] (-4073.366) (-4069.010) -- 0:02:39
830000 -- [-4066.546] (-4076.361) (-4081.047) (-4069.475) * (-4079.196) (-4072.917) [-4057.825] (-4073.875) -- 0:02:38
Average standard deviation of split frequencies: 0.005604
831000 -- (-4071.978) (-4079.914) (-4079.740) [-4061.665] * (-4072.314) (-4077.572) [-4076.994] (-4070.677) -- 0:02:37
832000 -- (-4074.236) (-4072.119) (-4069.414) [-4068.948] * (-4075.826) [-4061.291] (-4066.371) (-4061.933) -- 0:02:36
833000 -- (-4065.479) (-4072.052) [-4064.621] (-4069.356) * (-4093.347) (-4061.217) [-4060.614] (-4066.777) -- 0:02:35
834000 -- [-4067.952] (-4079.983) (-4071.207) (-4067.619) * [-4079.453] (-4069.747) (-4061.213) (-4062.342) -- 0:02:34
835000 -- [-4064.708] (-4066.313) (-4076.013) (-4081.682) * (-4073.872) (-4072.263) (-4065.676) [-4065.008] -- 0:02:33
Average standard deviation of split frequencies: 0.005404
836000 -- (-4071.415) (-4083.996) (-4075.933) [-4063.000] * [-4074.984] (-4071.309) (-4067.564) (-4074.563) -- 0:02:32
837000 -- (-4080.565) (-4073.694) [-4073.035] (-4068.058) * (-4061.180) (-4073.365) (-4081.613) [-4070.289] -- 0:02:31
838000 -- (-4076.006) (-4077.893) [-4071.501] (-4090.067) * (-4073.052) [-4069.219] (-4074.857) (-4082.475) -- 0:02:30
839000 -- (-4076.690) [-4065.615] (-4072.943) (-4076.673) * [-4061.219] (-4067.865) (-4081.532) (-4075.862) -- 0:02:29
840000 -- (-4069.782) [-4067.608] (-4069.712) (-4077.696) * [-4063.856] (-4071.473) (-4069.660) (-4071.679) -- 0:02:28
Average standard deviation of split frequencies: 0.005491
841000 -- [-4062.766] (-4068.355) (-4069.908) (-4076.766) * (-4068.989) (-4057.639) [-4074.018] (-4084.477) -- 0:02:27
842000 -- (-4086.774) [-4065.893] (-4069.626) (-4069.846) * (-4076.924) (-4076.328) (-4075.626) [-4069.574] -- 0:02:26
843000 -- (-4080.051) [-4067.295] (-4076.493) (-4076.093) * (-4075.425) (-4062.524) [-4061.958] (-4067.273) -- 0:02:26
844000 -- (-4071.087) (-4084.521) [-4069.715] (-4069.287) * (-4065.327) (-4065.349) (-4076.623) [-4066.270] -- 0:02:25
845000 -- (-4080.372) (-4078.989) (-4071.170) [-4065.956] * (-4069.219) (-4085.370) [-4070.533] (-4070.543) -- 0:02:24
Average standard deviation of split frequencies: 0.005758
846000 -- (-4078.479) (-4070.025) [-4064.899] (-4076.800) * (-4076.331) (-4067.937) [-4072.049] (-4073.336) -- 0:02:23
847000 -- [-4061.990] (-4070.852) (-4069.165) (-4071.614) * (-4064.817) (-4070.921) [-4064.365] (-4071.438) -- 0:02:22
848000 -- (-4068.271) [-4070.630] (-4074.912) (-4075.505) * (-4073.075) (-4063.738) (-4065.860) [-4066.146] -- 0:02:21
849000 -- (-4066.414) (-4066.555) (-4068.018) [-4063.592] * [-4069.726] (-4069.557) (-4077.238) (-4086.541) -- 0:02:20
850000 -- (-4065.560) [-4063.549] (-4065.671) (-4076.229) * (-4078.566) (-4075.512) (-4065.448) [-4089.610] -- 0:02:19
Average standard deviation of split frequencies: 0.005796
851000 -- (-4076.577) (-4073.556) (-4069.110) [-4074.512] * [-4063.811] (-4077.187) (-4074.148) (-4067.083) -- 0:02:18
852000 -- [-4061.143] (-4071.036) (-4068.063) (-4077.655) * (-4067.389) [-4065.049] (-4081.834) (-4075.009) -- 0:02:17
853000 -- [-4073.646] (-4068.787) (-4078.106) (-4088.144) * (-4075.313) [-4065.800] (-4068.791) (-4085.205) -- 0:02:16
854000 -- (-4070.322) (-4074.855) [-4071.890] (-4081.542) * (-4072.008) (-4064.065) (-4071.700) [-4078.367] -- 0:02:15
855000 -- (-4089.399) [-4070.239] (-4068.092) (-4075.125) * [-4070.226] (-4068.599) (-4064.775) (-4073.878) -- 0:02:14
Average standard deviation of split frequencies: 0.005553
856000 -- [-4064.857] (-4085.527) (-4079.978) (-4080.943) * (-4071.181) (-4068.448) [-4059.936] (-4090.477) -- 0:02:13
857000 -- (-4078.985) (-4078.695) (-4060.367) [-4061.921] * (-4059.414) [-4062.983] (-4074.462) (-4079.955) -- 0:02:12
858000 -- (-4074.001) (-4074.107) (-4061.670) [-4070.511] * [-4073.008] (-4074.446) (-4065.650) (-4071.382) -- 0:02:12
859000 -- [-4080.015] (-4064.599) (-4066.699) (-4076.208) * [-4062.365] (-4077.724) (-4069.754) (-4071.099) -- 0:02:10
860000 -- (-4071.552) [-4067.970] (-4071.028) (-4084.072) * (-4062.110) [-4065.160] (-4073.249) (-4078.516) -- 0:02:10
Average standard deviation of split frequencies: 0.005728
861000 -- (-4071.159) (-4082.739) (-4081.117) [-4065.716] * (-4077.285) [-4062.028] (-4072.481) (-4065.278) -- 0:02:09
862000 -- (-4071.507) (-4063.198) (-4072.704) [-4059.186] * (-4075.267) (-4063.826) (-4076.973) [-4066.832] -- 0:02:08
863000 -- [-4066.462] (-4070.188) (-4066.905) (-4085.175) * (-4073.391) (-4075.450) [-4067.605] (-4066.083) -- 0:02:07
864000 -- (-4065.044) (-4069.609) [-4058.268] (-4070.739) * (-4084.513) (-4065.283) [-4075.927] (-4079.622) -- 0:02:06
865000 -- [-4064.864] (-4089.209) (-4078.832) (-4076.991) * (-4079.582) (-4075.602) [-4066.532] (-4079.342) -- 0:02:05
Average standard deviation of split frequencies: 0.005738
866000 -- (-4073.250) (-4076.611) [-4068.603] (-4079.445) * (-4070.697) [-4070.390] (-4062.209) (-4081.920) -- 0:02:04
867000 -- [-4066.545] (-4072.943) (-4069.877) (-4081.421) * (-4077.422) (-4072.712) [-4071.953] (-4075.161) -- 0:02:03
868000 -- (-4085.946) [-4067.839] (-4072.956) (-4090.699) * (-4070.528) (-4069.098) (-4077.272) [-4063.119] -- 0:02:02
869000 -- (-4078.649) (-4064.062) (-4068.255) [-4070.900] * (-4075.367) (-4066.686) (-4071.021) [-4066.303] -- 0:02:01
870000 -- (-4066.085) [-4072.107] (-4078.241) (-4097.415) * (-4074.006) (-4084.271) (-4077.447) [-4060.754] -- 0:02:00
Average standard deviation of split frequencies: 0.005820
871000 -- (-4083.564) [-4063.502] (-4065.017) (-4071.924) * [-4063.533] (-4075.190) (-4069.659) (-4070.387) -- 0:01:59
872000 -- (-4086.864) (-4069.759) [-4078.426] (-4067.147) * (-4070.611) (-4093.923) [-4065.917] (-4070.627) -- 0:01:58
873000 -- (-4071.777) (-4080.658) (-4082.177) [-4070.817] * [-4066.565] (-4069.766) (-4064.729) (-4084.948) -- 0:01:57
874000 -- [-4079.003] (-4074.627) (-4061.257) (-4074.651) * (-4066.750) [-4075.894] (-4068.266) (-4076.676) -- 0:01:57
875000 -- (-4078.242) (-4064.109) (-4075.175) [-4066.797] * (-4058.275) (-4088.789) [-4063.227] (-4075.125) -- 0:01:56
Average standard deviation of split frequencies: 0.005830
876000 -- (-4084.591) [-4069.362] (-4072.636) (-4082.056) * (-4069.131) (-4069.586) [-4070.569] (-4072.794) -- 0:01:55
877000 -- (-4070.691) (-4081.653) (-4074.708) [-4077.243] * (-4063.269) (-4074.264) (-4081.276) [-4067.897] -- 0:01:54
878000 -- (-4070.565) [-4071.664] (-4071.768) (-4064.432) * (-4070.041) (-4068.859) (-4082.072) [-4068.849] -- 0:01:53
879000 -- (-4079.661) [-4072.848] (-4076.408) (-4078.604) * (-4065.153) (-4085.863) (-4064.253) [-4067.145] -- 0:01:52
880000 -- (-4088.510) (-4063.693) (-4076.351) [-4061.763] * (-4069.127) (-4073.033) [-4068.929] (-4063.640) -- 0:01:51
Average standard deviation of split frequencies: 0.005554
881000 -- (-4088.402) (-4069.350) (-4081.528) [-4063.283] * [-4072.238] (-4072.466) (-4074.076) (-4063.468) -- 0:01:50
882000 -- (-4065.144) (-4079.386) [-4071.325] (-4083.229) * (-4083.341) (-4060.211) [-4072.007] (-4068.205) -- 0:01:49
883000 -- (-4070.747) (-4070.848) (-4064.241) [-4056.105] * (-4078.411) [-4062.897] (-4078.729) (-4080.648) -- 0:01:48
884000 -- (-4075.683) (-4076.927) [-4062.153] (-4066.106) * (-4080.239) (-4072.057) [-4059.288] (-4065.276) -- 0:01:47
885000 -- [-4072.554] (-4075.600) (-4074.994) (-4066.696) * (-4074.883) (-4063.014) (-4074.395) [-4060.362] -- 0:01:46
Average standard deviation of split frequencies: 0.005720
886000 -- (-4071.566) (-4074.853) [-4068.260] (-4071.563) * [-4075.247] (-4067.906) (-4069.811) (-4071.387) -- 0:01:45
887000 -- (-4067.116) (-4065.567) [-4064.737] (-4071.334) * (-4070.638) [-4067.736] (-4072.851) (-4073.193) -- 0:01:44
888000 -- (-4064.931) (-4071.959) [-4071.978] (-4070.209) * [-4066.975] (-4076.467) (-4081.527) (-4073.366) -- 0:01:44
889000 -- (-4081.950) (-4083.356) [-4067.149] (-4065.551) * (-4078.368) (-4068.266) (-4075.710) [-4067.938] -- 0:01:43
890000 -- [-4063.685] (-4075.694) (-4059.447) (-4069.642) * [-4069.460] (-4066.628) (-4077.612) (-4076.385) -- 0:01:42
Average standard deviation of split frequencies: 0.005954
891000 -- (-4067.847) (-4067.877) (-4080.635) [-4071.293] * (-4068.707) [-4068.467] (-4076.855) (-4074.735) -- 0:01:41
892000 -- (-4071.822) [-4077.180] (-4071.962) (-4079.288) * (-4072.864) (-4077.520) [-4063.818] (-4078.959) -- 0:01:40
893000 -- (-4082.659) [-4063.986] (-4078.651) (-4072.048) * (-4075.796) (-4068.993) (-4073.280) [-4065.541] -- 0:01:39
894000 -- (-4079.234) (-4059.941) (-4085.450) [-4068.489] * (-4074.193) [-4061.078] (-4070.891) (-4076.739) -- 0:01:38
895000 -- [-4057.219] (-4077.652) (-4060.194) (-4066.682) * (-4078.136) (-4084.905) [-4067.772] (-4068.779) -- 0:01:37
Average standard deviation of split frequencies: 0.005963
896000 -- (-4066.767) (-4073.611) [-4065.705] (-4064.813) * [-4069.669] (-4080.899) (-4065.145) (-4092.705) -- 0:01:36
897000 -- (-4073.248) (-4076.401) (-4067.091) [-4077.181] * [-4066.591] (-4073.949) (-4070.988) (-4078.242) -- 0:01:35
898000 -- (-4084.457) [-4074.605] (-4068.681) (-4089.083) * (-4080.318) (-4073.932) [-4066.330] (-4081.131) -- 0:01:34
899000 -- (-4066.727) (-4065.169) [-4061.697] (-4070.327) * (-4073.813) (-4071.571) [-4073.400] (-4077.880) -- 0:01:33
900000 -- (-4077.595) (-4064.353) (-4083.905) [-4070.413] * (-4075.911) (-4071.829) [-4073.252] (-4070.280) -- 0:01:32
Average standard deviation of split frequencies: 0.005975
901000 -- (-4079.317) (-4066.652) [-4076.988] (-4073.629) * (-4085.313) (-4070.667) (-4066.453) [-4060.717] -- 0:01:31
902000 -- (-4086.204) [-4071.226] (-4073.989) (-4074.594) * (-4074.723) [-4068.758] (-4076.435) (-4071.742) -- 0:01:30
903000 -- [-4061.240] (-4074.622) (-4072.193) (-4066.018) * (-4082.578) [-4069.786] (-4066.176) (-4080.525) -- 0:01:30
904000 -- (-4074.323) (-4071.953) [-4069.278] (-4064.362) * [-4071.033] (-4077.238) (-4071.934) (-4094.601) -- 0:01:29
905000 -- (-4069.938) [-4061.124] (-4071.891) (-4075.401) * [-4080.272] (-4077.315) (-4072.455) (-4075.233) -- 0:01:28
Average standard deviation of split frequencies: 0.005875
906000 -- (-4085.664) (-4082.473) [-4076.240] (-4054.895) * (-4069.528) (-4077.677) [-4061.151] (-4070.705) -- 0:01:27
907000 -- (-4077.596) (-4068.382) (-4073.498) [-4068.517] * (-4070.610) (-4061.376) [-4080.304] (-4083.309) -- 0:01:26
908000 -- (-4069.174) (-4074.358) (-4073.774) [-4069.995] * (-4062.250) [-4066.117] (-4068.503) (-4086.090) -- 0:01:25
909000 -- (-4067.741) (-4074.601) [-4070.172] (-4081.845) * (-4073.492) (-4060.120) (-4079.446) [-4066.323] -- 0:01:24
910000 -- (-4064.850) [-4073.706] (-4075.804) (-4073.057) * (-4081.381) (-4070.000) [-4071.690] (-4072.664) -- 0:01:23
Average standard deviation of split frequencies: 0.006018
911000 -- (-4072.008) (-4072.861) (-4065.655) [-4067.027] * (-4078.689) [-4070.942] (-4067.456) (-4068.807) -- 0:01:22
912000 -- (-4070.970) (-4073.920) (-4068.148) [-4070.061] * (-4067.798) (-4066.542) (-4073.855) [-4076.149] -- 0:01:21
913000 -- (-4068.201) (-4077.507) (-4065.732) [-4072.718] * (-4077.635) (-4078.992) (-4069.852) [-4060.590] -- 0:01:20
914000 -- (-4082.220) (-4077.575) [-4066.406] (-4066.978) * (-4066.936) (-4083.785) (-4063.416) [-4075.906] -- 0:01:19
915000 -- [-4061.153] (-4075.883) (-4087.027) (-4073.297) * [-4064.443] (-4070.121) (-4061.778) (-4097.549) -- 0:01:18
Average standard deviation of split frequencies: 0.006004
916000 -- (-4080.119) (-4069.640) (-4058.605) [-4060.271] * (-4076.509) (-4066.650) [-4059.636] (-4076.880) -- 0:01:17
917000 -- (-4073.561) (-4086.696) [-4062.431] (-4080.057) * (-4078.673) [-4079.929] (-4069.759) (-4069.827) -- 0:01:17
918000 -- [-4064.103] (-4072.276) (-4070.053) (-4078.608) * (-4074.576) (-4084.723) (-4076.209) [-4057.996] -- 0:01:16
919000 -- [-4072.638] (-4085.535) (-4072.641) (-4081.789) * (-4071.823) (-4068.829) (-4066.454) [-4065.956] -- 0:01:15
920000 -- [-4073.365] (-4076.156) (-4066.535) (-4077.083) * (-4069.079) (-4070.238) (-4073.805) [-4060.843] -- 0:01:14
Average standard deviation of split frequencies: 0.005995
921000 -- (-4076.644) (-4059.447) [-4073.658] (-4068.135) * (-4072.375) (-4066.503) (-4081.432) [-4070.039] -- 0:01:13
922000 -- (-4078.349) (-4072.749) (-4081.477) [-4062.280] * [-4068.123] (-4073.593) (-4067.909) (-4074.756) -- 0:01:12
923000 -- (-4075.985) (-4067.752) [-4070.639] (-4061.896) * (-4074.808) (-4065.764) [-4063.413] (-4066.875) -- 0:01:11
924000 -- (-4075.278) (-4062.537) (-4088.348) [-4063.923] * (-4062.822) (-4063.676) [-4074.373] (-4079.237) -- 0:01:10
925000 -- (-4068.683) [-4064.431] (-4069.928) (-4068.937) * (-4083.260) (-4066.502) (-4067.355) [-4066.223] -- 0:01:09
Average standard deviation of split frequencies: 0.006088
926000 -- (-4064.489) (-4074.779) (-4068.109) [-4064.438] * (-4071.861) [-4062.222] (-4086.864) (-4066.436) -- 0:01:08
927000 -- (-4085.239) (-4070.136) (-4072.257) [-4068.751] * (-4069.730) (-4068.646) (-4074.675) [-4070.163] -- 0:01:07
928000 -- (-4070.340) (-4078.305) [-4070.805] (-4061.784) * [-4062.048] (-4076.319) (-4084.579) (-4069.027) -- 0:01:06
929000 -- (-4076.526) (-4074.577) (-4068.566) [-4067.059] * (-4066.993) (-4081.972) (-4064.206) [-4067.170] -- 0:01:05
930000 -- (-4066.616) (-4071.260) [-4062.124] (-4079.354) * (-4072.600) (-4075.727) (-4063.919) [-4076.001] -- 0:01:04
Average standard deviation of split frequencies: 0.006226
931000 -- (-4076.417) (-4083.447) [-4062.744] (-4078.775) * [-4063.708] (-4076.852) (-4069.265) (-4069.564) -- 0:01:04
932000 -- [-4064.264] (-4065.112) (-4068.891) (-4073.795) * (-4058.762) (-4082.443) (-4072.568) [-4063.888] -- 0:01:03
933000 -- (-4071.768) (-4068.464) [-4067.105] (-4071.845) * (-4071.992) (-4060.126) (-4073.038) [-4063.361] -- 0:01:02
934000 -- (-4064.211) (-4064.845) (-4085.191) [-4068.242] * (-4065.639) (-4070.655) (-4072.599) [-4069.175] -- 0:01:01
935000 -- (-4068.413) [-4066.152] (-4072.004) (-4071.272) * (-4071.286) (-4071.989) (-4082.892) [-4064.027] -- 0:01:00
Average standard deviation of split frequencies: 0.006736
936000 -- (-4077.568) [-4071.685] (-4073.743) (-4066.823) * (-4072.873) (-4073.292) (-4067.750) [-4069.077] -- 0:00:59
937000 -- (-4069.323) (-4085.579) (-4066.602) [-4072.051] * (-4071.133) (-4070.585) [-4067.449] (-4071.889) -- 0:00:58
938000 -- (-4067.463) (-4078.367) [-4057.707] (-4084.907) * (-4078.761) (-4070.046) [-4071.182] (-4084.002) -- 0:00:57
939000 -- (-4074.263) [-4064.444] (-4068.900) (-4076.184) * (-4079.320) (-4061.744) [-4068.915] (-4074.085) -- 0:00:56
940000 -- (-4074.023) (-4064.919) [-4060.862] (-4083.821) * (-4076.568) (-4064.956) [-4068.239] (-4082.080) -- 0:00:55
Average standard deviation of split frequencies: 0.006390
941000 -- [-4064.364] (-4076.431) (-4072.043) (-4068.551) * [-4072.411] (-4085.245) (-4071.284) (-4074.462) -- 0:00:54
942000 -- (-4071.262) [-4069.384] (-4068.505) (-4069.997) * [-4070.432] (-4065.059) (-4072.593) (-4071.382) -- 0:00:53
943000 -- [-4070.393] (-4074.232) (-4079.858) (-4086.844) * [-4067.845] (-4073.665) (-4076.280) (-4077.555) -- 0:00:52
944000 -- [-4073.441] (-4068.666) (-4078.091) (-4075.104) * (-4075.639) (-4070.652) [-4072.541] (-4064.319) -- 0:00:51
945000 -- [-4064.489] (-4075.157) (-4078.375) (-4088.482) * (-4072.927) (-4072.786) (-4066.595) [-4068.665] -- 0:00:51
Average standard deviation of split frequencies: 0.006312
946000 -- (-4077.498) (-4069.522) (-4086.873) [-4085.143] * (-4066.004) (-4078.765) [-4063.755] (-4074.408) -- 0:00:50
947000 -- (-4069.404) (-4061.345) [-4071.453] (-4081.454) * [-4069.282] (-4080.282) (-4075.659) (-4075.822) -- 0:00:49
948000 -- (-4075.461) (-4089.486) (-4064.301) [-4069.755] * [-4069.282] (-4070.752) (-4063.537) (-4072.234) -- 0:00:48
949000 -- (-4087.781) (-4069.683) [-4064.833] (-4063.772) * (-4073.410) (-4075.019) [-4058.225] (-4078.995) -- 0:00:47
950000 -- (-4076.302) [-4063.558] (-4072.495) (-4064.013) * (-4075.131) (-4073.291) [-4059.337] (-4084.873) -- 0:00:46
Average standard deviation of split frequencies: 0.006508
951000 -- (-4072.365) (-4083.916) (-4067.547) [-4077.284] * (-4082.848) [-4065.027] (-4059.332) (-4073.730) -- 0:00:45
952000 -- (-4062.860) (-4079.298) [-4059.974] (-4079.560) * (-4073.892) (-4067.032) [-4060.522] (-4074.551) -- 0:00:44
953000 -- (-4078.022) (-4071.311) [-4065.151] (-4079.669) * [-4070.248] (-4073.858) (-4080.608) (-4069.711) -- 0:00:43
954000 -- (-4080.984) [-4069.532] (-4070.804) (-4070.790) * (-4072.661) (-4074.837) (-4071.430) [-4060.014] -- 0:00:42
955000 -- (-4092.486) [-4068.495] (-4070.796) (-4084.206) * [-4069.759] (-4075.284) (-4078.244) (-4065.566) -- 0:00:41
Average standard deviation of split frequencies: 0.006431
956000 -- (-4076.545) (-4064.641) (-4068.304) [-4082.050] * (-4070.783) (-4085.497) [-4077.652] (-4071.807) -- 0:00:40
957000 -- (-4070.363) [-4070.680] (-4075.716) (-4094.066) * (-4080.750) (-4068.466) [-4067.789] (-4076.664) -- 0:00:39
958000 -- (-4070.033) [-4070.915] (-4075.113) (-4087.689) * (-4078.693) (-4071.768) (-4086.476) [-4068.265] -- 0:00:38
959000 -- (-4071.999) (-4075.360) [-4067.545] (-4084.432) * [-4063.892] (-4068.868) (-4074.826) (-4077.997) -- 0:00:38
960000 -- (-4068.964) [-4073.995] (-4073.373) (-4076.693) * (-4077.849) (-4070.935) [-4079.097] (-4067.621) -- 0:00:37
Average standard deviation of split frequencies: 0.006604
961000 -- (-4074.103) (-4070.249) [-4072.468] (-4073.775) * (-4075.802) [-4062.580] (-4076.086) (-4074.474) -- 0:00:36
962000 -- (-4068.253) (-4084.229) (-4064.864) [-4067.230] * (-4077.535) (-4066.454) (-4083.303) [-4061.789] -- 0:00:35
963000 -- (-4078.256) [-4068.536] (-4076.172) (-4071.669) * (-4070.341) (-4065.930) (-4077.150) [-4065.083] -- 0:00:34
964000 -- (-4069.670) (-4070.416) [-4074.900] (-4072.881) * (-4088.392) (-4071.416) [-4072.394] (-4069.667) -- 0:00:33
965000 -- (-4079.166) [-4076.375] (-4073.940) (-4071.662) * (-4069.079) [-4064.319] (-4074.467) (-4084.389) -- 0:00:32
Average standard deviation of split frequencies: 0.006405
966000 -- [-4074.277] (-4075.174) (-4079.811) (-4069.087) * [-4068.042] (-4070.552) (-4084.775) (-4072.254) -- 0:00:31
967000 -- (-4064.252) [-4066.623] (-4071.711) (-4071.054) * (-4085.357) (-4073.629) [-4070.656] (-4068.582) -- 0:00:30
968000 -- (-4079.272) (-4066.639) (-4062.553) [-4072.726] * (-4071.341) [-4064.117] (-4063.450) (-4066.672) -- 0:00:29
969000 -- (-4069.063) (-4075.066) [-4073.885] (-4066.160) * [-4056.250] (-4071.401) (-4066.603) (-4068.531) -- 0:00:28
970000 -- (-4065.126) (-4069.036) (-4070.525) [-4072.404] * (-4075.901) (-4061.544) [-4065.174] (-4069.976) -- 0:00:27
Average standard deviation of split frequencies: 0.006455
971000 -- (-4073.471) (-4079.894) [-4065.642] (-4070.984) * (-4064.766) (-4071.585) [-4066.567] (-4066.312) -- 0:00:26
972000 -- (-4064.407) (-4073.703) [-4071.889] (-4073.223) * (-4094.813) [-4066.772] (-4070.824) (-4070.609) -- 0:00:25
973000 -- [-4075.850] (-4069.497) (-4082.581) (-4064.306) * [-4075.942] (-4067.003) (-4071.187) (-4082.877) -- 0:00:25
974000 -- [-4067.723] (-4071.240) (-4064.521) (-4067.631) * (-4070.575) [-4058.749] (-4076.646) (-4067.032) -- 0:00:24
975000 -- (-4071.743) (-4071.211) (-4071.529) [-4067.623] * (-4066.986) [-4068.605] (-4060.951) (-4072.549) -- 0:00:23
Average standard deviation of split frequencies: 0.006219
976000 -- (-4070.319) [-4057.815] (-4082.106) (-4080.531) * [-4069.392] (-4072.327) (-4068.563) (-4073.429) -- 0:00:22
977000 -- [-4062.459] (-4072.805) (-4068.417) (-4069.803) * (-4074.612) [-4065.164] (-4077.912) (-4065.651) -- 0:00:21
978000 -- (-4075.201) (-4066.126) (-4062.561) [-4061.649] * (-4064.616) (-4081.989) (-4081.902) [-4075.840] -- 0:00:20
979000 -- (-4072.396) (-4067.576) [-4069.650] (-4068.133) * (-4081.710) (-4070.563) (-4075.211) [-4066.947] -- 0:00:19
980000 -- [-4062.226] (-4073.437) (-4072.925) (-4077.618) * (-4071.406) [-4072.459] (-4065.644) (-4065.388) -- 0:00:18
Average standard deviation of split frequencies: 0.006229
981000 -- [-4057.167] (-4082.011) (-4069.513) (-4077.065) * (-4063.161) [-4074.957] (-4078.923) (-4068.774) -- 0:00:17
982000 -- (-4076.120) [-4065.983] (-4070.872) (-4070.532) * [-4068.028] (-4094.450) (-4074.419) (-4076.443) -- 0:00:16
983000 -- (-4068.515) (-4093.903) [-4066.014] (-4082.173) * (-4074.583) [-4063.912] (-4068.285) (-4068.653) -- 0:00:15
984000 -- (-4072.623) (-4073.718) (-4075.507) [-4063.490] * (-4065.562) [-4078.858] (-4078.227) (-4068.238) -- 0:00:14
985000 -- [-4064.193] (-4074.091) (-4071.376) (-4067.558) * (-4060.950) (-4067.533) (-4076.053) [-4063.302] -- 0:00:13
Average standard deviation of split frequencies: 0.005956
986000 -- (-4084.608) (-4078.541) [-4062.430] (-4067.839) * (-4075.269) (-4082.920) (-4081.887) [-4069.257] -- 0:00:12
987000 -- (-4070.818) (-4079.121) (-4069.796) [-4069.206] * [-4069.695] (-4077.118) (-4078.678) (-4057.746) -- 0:00:12
988000 -- [-4066.954] (-4075.617) (-4067.001) (-4073.021) * (-4087.485) (-4067.665) (-4075.309) [-4064.579] -- 0:00:11
989000 -- (-4076.724) [-4066.857] (-4075.179) (-4079.421) * (-4073.356) (-4069.323) (-4081.472) [-4062.924] -- 0:00:10
990000 -- (-4064.451) (-4078.156) (-4081.188) [-4075.153] * (-4082.178) [-4072.416] (-4069.630) (-4084.550) -- 0:00:09
Average standard deviation of split frequencies: 0.005889
991000 -- (-4069.459) (-4075.813) [-4070.423] (-4074.883) * (-4071.273) [-4070.881] (-4076.192) (-4074.142) -- 0:00:08
992000 -- [-4081.144] (-4071.886) (-4065.429) (-4082.529) * (-4068.910) (-4069.111) (-4076.160) [-4068.085] -- 0:00:07
993000 -- (-4074.807) (-4072.947) [-4065.797] (-4065.402) * (-4065.210) (-4071.069) [-4076.970] (-4063.083) -- 0:00:06
994000 -- (-4076.928) (-4068.854) (-4069.337) [-4062.402] * [-4069.636] (-4075.942) (-4070.881) (-4067.623) -- 0:00:05
995000 -- (-4069.811) (-4063.692) (-4071.865) [-4061.656] * [-4072.039] (-4086.472) (-4077.536) (-4071.165) -- 0:00:04
Average standard deviation of split frequencies: 0.005423
996000 -- (-4075.645) (-4066.812) [-4071.968] (-4056.558) * (-4074.662) [-4058.812] (-4069.024) (-4065.459) -- 0:00:03
997000 -- (-4071.215) (-4065.049) [-4063.845] (-4062.971) * (-4064.274) (-4081.599) [-4067.222] (-4073.688) -- 0:00:02
998000 -- (-4079.410) (-4070.762) (-4073.978) [-4067.826] * (-4070.460) (-4070.955) (-4073.064) [-4063.784] -- 0:00:01
999000 -- (-4068.875) [-4070.270] (-4066.828) (-4081.646) * (-4071.825) [-4066.155] (-4082.114) (-4066.403) -- 0:00:00
1000000 -- [-4056.122] (-4076.460) (-4069.469) (-4066.493) * (-4074.734) (-4067.852) (-4061.303) [-4060.747] -- 0:00:00
Average standard deviation of split frequencies: 0.005221
Analysis completed in 15 mins 28 seconds
Analysis used 927.42 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -4050.86
Likelihood of best state for "cold" chain of run 2 was -4050.86
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
36.5 % ( 26 %) Dirichlet(Revmat{all})
54.7 % ( 39 %) Slider(Revmat{all})
20.6 % ( 26 %) Dirichlet(Pi{all})
25.9 % ( 22 %) Slider(Pi{all})
29.5 % ( 23 %) Multiplier(Alpha{1,2})
49.9 % ( 31 %) Multiplier(Alpha{3})
59.9 % ( 34 %) Slider(Pinvar{all})
24.7 % ( 21 %) ExtSPR(Tau{all},V{all})
14.4 % ( 12 %) ExtTBR(Tau{all},V{all})
28.0 % ( 31 %) NNI(Tau{all},V{all})
27.2 % ( 26 %) ParsSPR(Tau{all},V{all})
26.9 % ( 21 %) Multiplier(V{all})
38.2 % ( 35 %) Nodeslider(V{all})
24.8 % ( 22 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
36.7 % ( 31 %) Dirichlet(Revmat{all})
56.4 % ( 48 %) Slider(Revmat{all})
21.4 % ( 27 %) Dirichlet(Pi{all})
25.6 % ( 25 %) Slider(Pi{all})
30.1 % ( 27 %) Multiplier(Alpha{1,2})
49.5 % ( 21 %) Multiplier(Alpha{3})
61.0 % ( 44 %) Slider(Pinvar{all})
24.8 % ( 26 %) ExtSPR(Tau{all},V{all})
14.4 % ( 8 %) ExtTBR(Tau{all},V{all})
28.0 % ( 25 %) NNI(Tau{all},V{all})
27.3 % ( 24 %) ParsSPR(Tau{all},V{all})
27.0 % ( 25 %) Multiplier(V{all})
38.4 % ( 30 %) Nodeslider(V{all})
24.6 % ( 26 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.71 0.49 0.32
2 | 167536 0.74 0.52
3 | 166874 166736 0.76
4 | 166195 166267 166392
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.72 0.49 0.32
2 | 166374 0.74 0.52
3 | 166642 167024 0.76
4 | 166687 166771 166502
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -4065.25
| 2 1 |
| 2 |
| 2 1 2 1 2 |
| 2 22 1 21 1|
| 1 1 2 2 2 1 1 2 1 1 2 |
| 2 1 2 1 221 1 1 2 2 1 *21 1 2|
| 1 1 2 1 22 2221 2 11 1 2 |
| 1 2 1 2 1 21 1 2 1* *2 1 |
| 1 1 1 12 2 1 2 2 2 1 222 2 |
| 1 1 1 2 |
| 2 1 1 1 1 2 1 2 |
|1 2 2 11 2 2 1 |
|2 2 22 |
| 1 1 1 |
| 2 1 1 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -4071.16
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -4059.59 -4082.26
2 -4060.52 -4082.39
--------------------------------------
TOTAL -4059.95 -4082.33
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.960602 0.007811 0.792385 1.137121 0.952958 926.70 1081.49 1.000
r(A<->C){all} 0.094895 0.000514 0.050050 0.136239 0.093599 853.85 867.14 1.000
r(A<->G){all} 0.243614 0.000778 0.192406 0.301975 0.242388 803.17 989.25 1.002
r(A<->T){all} 0.074763 0.000197 0.050808 0.104558 0.074004 1115.77 1165.61 1.000
r(C<->G){all} 0.110207 0.000535 0.067374 0.156350 0.108718 687.95 774.38 1.000
r(C<->T){all} 0.405297 0.001036 0.343873 0.470783 0.405172 780.61 833.83 1.000
r(G<->T){all} 0.071223 0.000206 0.044967 0.100101 0.070492 1136.62 1206.31 1.000
pi(A){all} 0.251114 0.000116 0.231695 0.273109 0.251028 1039.61 1087.09 1.000
pi(C){all} 0.185638 0.000085 0.168074 0.203668 0.185686 1045.73 1171.41 1.001
pi(G){all} 0.217639 0.000106 0.197029 0.237841 0.217456 1090.43 1113.08 1.000
pi(T){all} 0.345608 0.000137 0.322877 0.368387 0.345575 1045.13 1103.29 1.000
alpha{1,2} 0.235626 0.001746 0.164660 0.325512 0.231239 1067.27 1193.31 1.000
alpha{3} 3.232228 1.666248 1.283614 5.837711 2.956414 1225.80 1252.38 1.000
pinvar{all} 0.086540 0.003210 0.000105 0.190028 0.079067 1135.83 1235.34 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C1
2 -- C10
3 -- C11
4 -- C12
5 -- C13
6 -- C14
7 -- C15
8 -- C2
9 -- C3
10 -- C4
11 -- C5
12 -- C6
13 -- C7
14 -- C8
15 -- C9
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
---------------------
1 -- .**************
2 -- .*.............
3 -- ..*............
4 -- ...*...........
5 -- ....*..........
6 -- .....*.........
7 -- ......*........
8 -- .......*.......
9 -- ........*......
10 -- .........*.....
11 -- ..........*....
12 -- ...........*...
13 -- ............*..
14 -- .............*.
15 -- ..............*
16 -- .*.****.*******
17 -- .*..*..........
18 -- .....**......*.
19 -- ...*.**......*.
20 -- ..*....*.......
21 -- ........*...*..
22 -- ........*****..
23 -- .*..*...*****.*
24 -- ........*****.*
25 -- .........***...
26 -- ......*......*.
27 -- .....*.......*.
28 -- .*..*...*****..
29 -- .....**........
30 -- .........**....
31 -- ..........**...
32 -- .........*.*...
33 -- .*.****.******.
34 -- ........*..**..
35 -- ........***.*..
36 -- ........**.**..
37 -- ........**..*..
38 -- ........*.*.*..
39 -- ........*.***..
---------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
16 3002 1.000000 0.000000 1.000000 1.000000 2
17 3002 1.000000 0.000000 1.000000 1.000000 2
18 3001 0.999667 0.000471 0.999334 1.000000 2
19 2999 0.999001 0.000471 0.998668 0.999334 2
20 2945 0.981013 0.006124 0.976682 0.985343 2
21 2744 0.914057 0.003769 0.911392 0.916722 2
22 2693 0.897069 0.007066 0.892072 0.902065 2
23 1860 0.619587 0.001884 0.618254 0.620919 2
24 1860 0.619587 0.013191 0.610260 0.628914 2
25 1176 0.391739 0.000942 0.391073 0.392405 2
26 1017 0.338774 0.007066 0.333777 0.343771 2
27 1005 0.334777 0.008009 0.329114 0.340440 2
28 993 0.330779 0.009893 0.323784 0.337775 2
29 980 0.326449 0.000942 0.325783 0.327115 2
30 727 0.242172 0.000471 0.241839 0.242505 2
31 681 0.226849 0.003298 0.224517 0.229181 2
32 675 0.224850 0.008009 0.219187 0.230513 2
33 537 0.178881 0.002355 0.177215 0.180546 2
34 431 0.143571 0.001413 0.142572 0.144570 2
35 419 0.139574 0.006124 0.135243 0.143904 2
36 414 0.137908 0.012248 0.129247 0.146569 2
37 399 0.132911 0.007066 0.127915 0.137908 2
38 397 0.132245 0.017430 0.119920 0.144570 2
39 387 0.128914 0.007066 0.123917 0.133911 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.006049 0.000006 0.001803 0.010874 0.005782 1.000 2
length{all}[2] 0.000871 0.000001 0.000000 0.002577 0.000625 1.001 2
length{all}[3] 0.000811 0.000001 0.000000 0.002375 0.000573 1.000 2
length{all}[4] 0.001021 0.000001 0.000000 0.003074 0.000683 1.001 2
length{all}[5] 0.001670 0.000001 0.000029 0.003979 0.001378 1.000 2
length{all}[6] 0.000834 0.000001 0.000000 0.002449 0.000586 1.000 2
length{all}[7] 0.005940 0.000005 0.001943 0.010420 0.005605 1.000 2
length{all}[8] 0.000844 0.000001 0.000000 0.002575 0.000579 1.000 2
length{all}[9] 0.001192 0.000001 0.000000 0.003547 0.000837 1.000 2
length{all}[10] 0.001200 0.000002 0.000001 0.003740 0.000803 1.001 2
length{all}[11] 0.001194 0.000001 0.000000 0.003681 0.000822 1.000 2
length{all}[12] 0.001187 0.000001 0.000000 0.003605 0.000828 1.000 2
length{all}[13] 0.001205 0.000001 0.000000 0.003656 0.000848 1.000 2
length{all}[14] 0.000851 0.000001 0.000000 0.002531 0.000588 1.002 2
length{all}[15] 0.688567 0.006364 0.534930 0.842158 0.683250 1.000 2
length{all}[16] 0.094656 0.000179 0.069013 0.122073 0.094509 1.000 2
length{all}[17] 0.044114 0.000069 0.028530 0.060235 0.043848 1.000 2
length{all}[18] 0.014591 0.000014 0.007899 0.022202 0.014241 1.000 2
length{all}[19] 0.028100 0.000042 0.015890 0.040713 0.027668 1.000 2
length{all}[20] 0.003428 0.000004 0.000206 0.007017 0.003142 1.000 2
length{all}[21] 0.003271 0.000005 0.000001 0.007362 0.002864 1.000 2
length{all}[22] 0.027067 0.000212 0.000045 0.049981 0.027631 1.000 2
length{all}[23] 0.010340 0.000032 0.000230 0.020383 0.009943 1.000 2
length{all}[24] 0.026939 0.000158 0.003104 0.050760 0.026768 1.001 2
length{all}[25] 0.002272 0.000004 0.000001 0.006054 0.001796 1.001 2
length{all}[26] 0.000849 0.000001 0.000001 0.002709 0.000577 1.000 2
length{all}[27] 0.000847 0.000001 0.000000 0.002480 0.000615 1.003 2
length{all}[28] 0.012194 0.000037 0.000697 0.023394 0.011552 1.000 2
length{all}[29] 0.000839 0.000001 0.000001 0.002382 0.000606 1.002 2
length{all}[30] 0.001131 0.000001 0.000001 0.003597 0.000730 1.000 2
length{all}[31] 0.001154 0.000001 0.000001 0.003342 0.000814 0.999 2
length{all}[32] 0.001183 0.000001 0.000001 0.003450 0.000821 1.001 2
length{all}[33] 0.012492 0.000084 0.000187 0.029604 0.011069 0.998 2
length{all}[34] 0.001290 0.000002 0.000002 0.003785 0.000891 1.000 2
length{all}[35] 0.001213 0.000002 0.000011 0.004003 0.000787 0.998 2
length{all}[36] 0.001305 0.000002 0.000002 0.004137 0.000852 0.998 2
length{all}[37] 0.001135 0.000001 0.000003 0.003384 0.000748 0.997 2
length{all}[38] 0.001258 0.000002 0.000003 0.003792 0.000868 1.006 2
length{all}[39] 0.001141 0.000001 0.000009 0.003284 0.000824 1.002 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.005221
Maximum standard deviation of split frequencies = 0.017430
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.006
Clade credibility values:
/----------------------------------------------------------------------- C1 (1)
|
| /------------ C10 (2)
| /----------------100---------------+
| | \------------ C13 (5)
| |
| | /------------ C3 (9)
| | /-----91----+
| | | \------------ C7 (13)
| /-----62----+ |
| | | |------------------------ C4 (10)
| | | /----90----+
| | | | |------------------------ C5 (11)
| | | | |
+ | \-----62----+ \------------------------ C6 (12)
|----100----+ |
| | \----------------------------------- C9 (15)
| |
| | /------------------------ C12 (4)
| | |
| \----------------100---------------+ /------------ C14 (6)
| | |
| \----100----+------------ C15 (7)
| |
| \------------ C8 (14)
|
| /------------ C11 (3)
\----------------------------98----------------------------+
\------------ C2 (8)
Phylogram (based on average branch lengths):
/- C1 (1)
|
| / C10 (2)
| /---+
| | \ C13 (5)
| |
| | / C3 (9)
| | |
| | | C7 (13)
| /+ |
| || | C4 (10)
| || /--+
| || | | C5 (11)
| || | |
+ |\-+ \ C6 (12)
|-------+ |
| | \------------------------------------------------------------ C9 (15)
| |
| | / C12 (4)
| | |
| \--+/ C14 (6)
| ||
| \+ C15 (7)
| |
| \ C8 (14)
|
| C11 (3)
|
\ C2 (8)
|-------| 0.100 expected changes per site
Calculating tree probabilities...
Credible sets of trees (703 trees sampled):
50 % credible set contains 62 trees
90 % credible set contains 403 trees
95 % credible set contains 553 trees
99 % credible set contains 673 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
Running FUBAR...
[2J[H /HYPHY 2.3.14.20190214beta(MP) for Linux on x86_64\
***************** TYPES OF STANDARD ANALYSES *****************
(1) Selection Analyses
(2) Evolutionary Hypothesis Testing
(3) Relative evolutionary rate inference
(4) Coevolutionary analysis
(5) Basic Analyses
(6) Codon Selection Analyses
(7) Compartmentalization
(8) Data File Tools
(9) Miscellaneous
(10) Model Comparison
(11) Kernel Analysis Tools
(12) Molecular Clock
(13) Phylogeny Reconstruction
(14) Positive Selection
(15) Recombination
(16) Selection/Recombination
(17) Relative Rate
(18) Relative Ratio
(19) Substitution Rates
Please select type of analyses you want to list (or press ENTER to process custom batch file):[2J[H***************** FILES IN 'Selection Analyses' *****************
(1) [MEME] Test for episodic site-level selection using MEME (Mixed Effects Model of Evolution).
(2) [FEL] Test for pervasive site-level selection using FEL (Fixed Effects Likelihood).
(3) [SLAC] Test for pervasive site-level selection using SLAC (Single Likelihood Ancestor Counting).
(4) [FUBAR] Test for pervasive site-level selection using FUBAR (Fast Unconstrained Bayesian AppRoximation for inferring selection).
(5) [BUSTED] Test for episodic gene-wide selection using BUSTED (Branch-site Unrestricted Statistical Test of Episodic Diversification).
(6) [aBSREL] Test for lineage-specific evolution using the branch-site method aBS-REL (Adaptive Branch-Site Random Effects Likelihood).
(7) [RELAX] Test for relaxation of selection pressure along a specified set of test branches using RELAX (a random effects test of selection relaxation).
Please select the analysis you would like to perform (or press ENTER to return to the list of analysis types):
Analysis Description
--------------------
Perform a Fast Unbiased AppRoximate Bayesian (FUBAR) analysis of a
coding sequence alignment to determine whether some sites have been
subject to pervasive purifying or diversifying selection. v2.1
introduces two more methods for estimating the posterior distribution of
grid weights: collapsed Gibbs MCMC (faster) and 0-th order Variation
Bayes approximation (fastest). Please note that a FUBAR analysis
generates a cache and a results JSON file in the same directory as
directory as the original alignment. HyPhy needs to have write
privileges to this directory. For example if the original file is in
/home/sergei/FUBAR/data/pol.nex then at the end of a FUBAR run, there
will also exist FUBAR-generated files
/home/sergei/FUBAR/data/pol.nex.FUBAR.json,
/home/sergei/FUBAR/data/pol.nex.fubrar.cache. They also provide
checkpointing so that a partially completed analysis can be restarted.
- __Requirements__: in-frame codon alignment (possibly partitioned) and a phylogenetic tree
(one per partition)
- __Citation__: FUBAR: a fast, unconstrained bayesian approximation for inferring
selection (2013), Mol Biol Evol. 30(5):1196-205
- __Written by__: Sergei L Kosakovsky Pond
- __Contact Information__: spond@temple.edu
- __Analysis Version__: 2.1
####Choose Genetic Code
1. [**Universal**] Universal code. (Genebank transl_table=1).
2. [**Vertebrate mtDNA**] Vertebrate mitochondrial DNA code. (Genebank transl_table=2).
3. [**Yeast mtDNA**] Yeast mitochondrial DNA code. (Genebank transl_table=3).
4. [**Mold/Protozoan mtDNA**] Mold, Protozoan and Coelenterate mitochondrial DNA and the Mycloplasma/Spiroplasma code. (Genebank transl_table=4).
5. [**Invertebrate mtDNA**] Invertebrate mitochondrial DNA code. (Genebank transl_table=5).
6. [**Ciliate Nuclear**] Ciliate, Dasycladacean and Hexamita Nuclear code. (Genebank transl_table=6).
7. [**Echinoderm mtDNA**] Echinoderm mitochondrial DNA code. (Genebank transl_table=9).
8. [**Euplotid Nuclear**] Euplotid Nuclear code. (Genebank transl_table=10).
9. [**Alt. Yeast Nuclear**] Alternative Yeast Nuclear code. (Genebank transl_table=12).
10. [**Ascidian mtDNA**] Ascidian mitochondrial DNA code. (Genebank transl_table=13).
11. [**Flatworm mtDNA**] Flatworm mitochondrial DNA code. (Genebank transl_table=14).
12. [**Blepharisma Nuclear**] Blepharisma Nuclear code. (Genebank transl_table=15).
13. [**Chlorophycean mtDNA**] Chlorophycean Mitochondrial Code (transl_table=16).
14. [**Trematode mtDNA**] Trematode Mitochondrial Code (transl_table=21).
15. [**Scenedesmus obliquus mtDNA**] Scenedesmus obliquus mitochondrial Code (transl_table=22).
16. [**Thraustochytrium mtDNA**] Thraustochytrium Mitochondrial Code (transl_table=23).
17. [**Pterobranchia mtDNA**] Pterobranchia Mitochondrial Code (transl_table=24).
18. [**SR1 and Gracilibacteria**] Candidate Division SR1 and Gracilibacteria Code (transl_table=25).
19. [**Pachysolen Nuclear**] Pachysolen tannophilus Nuclear Code (transl_table=26).
>Please choose an option (or press q to cancel selection):
>Select a coding sequence alignment file (`/usr/local/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/`)
>A tree was found in the data file: `(C1,(((C10,C13),(((C3,C7),C4,C5,C6),C9)),(C12,(C14,C15,C8))),(C11,C2))`
>Would you like to use it (y/n)?
>Loaded a multiple sequence alignment with **15** sequences, **443** codons, and **1** partitions from `/data//pss_subsets/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/fubar/results/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1.fna`
> FUBAR will write cache and result files to _/data//pss_subsets/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/fubar/results/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1.fna.FUBAR.cache_ and _/data//pss_subsets/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/fubar/results/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1.fna.FUBAR.json_, respectively
> Number of grid points per dimension (total number is D^2) (permissible range = [5,50], default value = 20, integer):
####Posterior estimation method
1. [**Metropolis-Hastings**] Full Metropolis-Hastings MCMC algorithm (slowest, original 2013 paper implementation)
2. [**Collapsed Gibbs**] Collapsed Gibbs sampler (intermediate speed)
3. [**Variational Bayes**] 0-th order Variational Bayes approximations (fastest, recommended default)
>Please choose an option (or press q to cancel selection):> The concentration parameter of the Dirichlet prior (permissible range = [0.001,1], default value = 0.5):
### Obtaining branch lengths and nucleotide substitution biases under the nucleotide GTR model
* Log(L) = -4141.79, AIC-c = 8347.69 (32 estimated parameters)
* Tree length (expected substitutions/site) for partition 1 : 0.532
### Computing the phylogenetic likelihood function on the grid
* Determining appropriate tree scaling based on the best score from a 20 x 20 rate grid
* Best scaling achieved for
* synonymous rate = 2.815
* non-synonymous rate = 0.571
* Computing conditional site likelihoods on a 20 x 20 rate grid
### Running an iterative zeroth order variational Bayes procedure to estimate the posterior mean of rate weights
* Using the following settings
* Dirichlet alpha : 0.5
### Tabulating site-level results
| Codon | Partition | alpha | beta |Posterior prob for positive selection|
|:--------------:|:--------------:|:--------------:|:--------------:|:-----------------------------------:|
| 204 | 1 | 1.186 | 9.768 | Pos. posterior = 0.9173 |
----
## FUBAR inferred 1 sites subject to diversifying positive selection at posterior probability >= 0.9
Of these, 0.08 are expected to be false positives (95% confidence interval of 0-1 )
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.09 sec, SCORE=1000, Nseq=15, Len=443
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus MGRMCIAMAPRTLLLLIGCQLVFGFNEPINIVSHLNDDWFLFGDSRSDCT
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCT
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus --------------------------------------------------
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus --------------------------------------------------
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus --------------------------------------------------
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus --------------------------------------------------
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus --------------------------------------------------
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus MACTD-AMAPRTLLLVLSLGYALGFNEPLNVVSHLNDDWFLFGDSRSDCN
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus0 MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus1 MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCT
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus2 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus3 MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIFSHLNDDWFLFGDSRSDCT
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus4 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus5 MGSTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus --------------------------------------------------
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus --------------------------------------------------
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus --------------------------------------------------
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus --------------------------------------------------
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus --------------------------------------------------
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus HINNLSHQNYNYMDLNPELCKSGKISAKAGNSLFKSFHFTDFYNYTGEGS
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus0 YVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGD
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus1 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus2 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus3 YVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGD
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus4 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus5 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus QIIFYEGVNFSPSHGFKCLVEGDNNKWMGNKARFYALLYKKMAQYRSLSF
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus QIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSF
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus ---------------------------MGNKARFYARVYEKMAQYRSLSF
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus ---------------------------MGNKARFYARVYEKMAQYRSLSF
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus ---------------------------MGNKARFYARVYEKMAQYRSLSF
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus ---------------------------MGNKARFYARVYEKMAQYRSLSF
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus ---------------------------MGNKARFYARVYEKMAQYRSLSF
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus QIIFYEGVNFTPYVGFKCLNNGDNSRWMGNKARFYTQLYQKMAHYRSLSI
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus0 QVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus1 QIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSF
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus2 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus3 QVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus4 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus5 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKAAFYARVYEKMAQYRSLSF
***** **: :*:***:*****:
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus VTVPYAYGGNAKPTSICKDK----TLTLNNPTFISKES--VDYYYVSEAN
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus VIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEAN
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus INITYTYNGSAGPVSMCKHTANGATLTLNNPTFIGKEASAPNYYYGSEAN
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus0 VNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEAN
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus1 VIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEAN
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus2 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus3 VNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEAN
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus4 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus5 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
: :.*:*.*.* *.*:**.. **********.**: :*** ****
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNIDTGVLYGFN
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFN
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus FTLHGCDEFIVPLCVFNGEYLSS-----KLYYDDSQYYYNMDTGVLYGFN
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus0 FTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFN
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus1 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFN
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus2 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus3 FTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFN
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus4 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus5 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGLN
*** ********** ***. .* : ** *** ***:* *****:*
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus STLNI-----TIGLDLTCIYLLLTPGNYKSISNELLLTMPSKAICLRKAK
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus0 STLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus1 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus2 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus3 STLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus4 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus5 CTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
.**:: ****** ** *******::* * **::*******:*.*
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus AFTPVQVVDSRWHSNRQSDNMTAIACQLPYCYFRNTTSDYNG-VYDSHHG
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus0 SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus1 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus2 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus3 SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus4 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus5 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
* ********* * ******** *******:****:::*.* .:* ***
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus DFYFRQLLSGLLYNVSCIAQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus DFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus DAGFTSVLAGLMYNVSCIAQQGAFVYNNVSSSWPQYPYGHCPTAANIGFI
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus0 DFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYM
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus1 DFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus2 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus3 DFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYM
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus4 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus5 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
* * .:*:**: *****:*****:****** ** * **:********::
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus APVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus APVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus APVCMYDPLPVILLGVLLGIAVLIIVFLLFYFMTDSGVRLHEI
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus0 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus1 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus2 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus3 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus4 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus5 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
****:******:*********** ****::***:**.*****
>681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus ATGGGCAGAATGTGCATAGCTATGGCTCCTCGCACACTGCTTTTGCTGATTGGCTGTCAGCTGGTGTTTGGGTTCAATGAACCTATTAACATCGTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTAGAAAACAATGGTCACCCTAAATTAGATTGGCTAGACCTCGACCCAAAATTGTGTAATTCAGGAAAGATAGCTGCGAAGAGTGGTAATTCTCTCTTCCGGAGTTTTCACTTTACTGATTTTTACAATTATACGGGTGAGGGAGACCAAATAATATTTTATGAAGGAGTTAATTTTAGTCCCAGCCATGGATTTAAATGCCTGGTTGAAGGAGATAATAATAAGTGGATGGGCAATAAAGCTCGATTTTATGCCCTATTGTACAAGAAGATGGCCCAATATAGGAGCCTATCTTTTGTTACTGTGCCTTATGCCTATGGAGGTAACGCCAAGCCCACCTCCATTTGTAAAGACAAA------------ACTTTAACACTCAATAATCCCACCTTCATTTCGAAGGAATCT------GTTGATTATTACTATGTGAGTGAGGCTAATTTCACACTACAAGGTTGTGATGAATTCATAGTCCCGCTCTGTGTTTTTAATGGTCATTCCAGGGGCAGTTCTTCGGATCCTGCCAACAAATATTATACTGACTCTCAGAGTTACTATAATATTGATACTGGTGTCCTATATGGCTTCAATTCGACCTTGGATGTAGGCAACACTGCTCAGAATCCAGGTCTTGATCTCACTTGTATGTATCTTGTTTTAACTCCCGGTAATTATAAGGCAGTGTCCTTAGAATATTTGTTAACTATACCCTCAAAGGCTATCTGTCTTCGTAAGCCTAAGCGCTTTATGCCTGTGCAGGTAGTAGATTCAAGGTGGAATAGTACCCGTCAGTCTGACAATATGACCGCTGTAGCCTGTCAGCTGCCATATTGTTTCTTCCGCAATACTTCTGCGGATTATAGTGGTGATACACATGATGTACACCATGGTGATTTTTATTTCAGGCAGTTATTGTCTGGGTTGCTTTATAATGTGTCCTGTATTGCCCAACAGGGTGCATTTCTTTATAATAATGTTAGCTCCATCTGGCCAGTTTATGGCTATGGCCACTGTCCAACTGCTGCTAATATTGGTTATATGGCACCCGTTTGTCTTTATGACCCCCTACCGGTCATATTACTAGGTGTCTTATTGGGTATAGCTGTGTTAATTATTGTTTTTCTTATTTTGTATTTTATGGCGGATAGCAGTGTTAGGTTGCATGAGGCC >8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus ATGGGCAGAATGTGCATAGCTATGGCTCCTCGCACACTGCTTTTGCTGATTGGCTGTCAGCTGGTGTTAGGGTTCAATGAACCTATTAACATCGTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTAGAAAACAATGGTCACCCTAAATTAGATTGGCTAGACCTCGACCCAAAATTGTGTAATTCAGGAAAGATAGCTGCGAAGAGTGGTAATTCTCTCTTCCGGAGTTTTCACTTTACTGATTTTTACAATTATACGGGTGAGGGAGACCAAATAATATTTTATGAAGGAGTTAATTTTAGTCCCAGCCATGGATTTAAATGCCTGGTTGAAGGAGATAATAAAAAGTGGATGGGCAATAAAGCTCGATTTTATGCCCTATTGTACAAGAAGATGGCCCAATATAGGAGCCTATCTTTTGTTATTGTGCCTTATGCCTATGGAGGTAACGCCAAGCCCACCTCCATTTGCAAAGACAAA------------ACTTTAACACTCAATAATCCCACCTTCATTTCGAAGGAATCTAATTATGTTGATTATTACTATGTGAGTGAGGCTAATTTCACACTACAAGGTTGTGATGAATTCATAGTCCCGCTCTGTGTTTTTAATGGTCATTCCAGGGGCAGTTCTTCGGATCCTGCCAACAAATATTATACTGACTCTCAGAGTTACTATAATATGGATACTGGTGTCCTATATGGCTTCAATTCGACCTTGGATGTAGGCAACACTGCTCAGAATCCAGGTCTTGATCTCACTTGTATGTATCTTGTTTTAACTCCCGGTAATTATAAGGCAGTGTCCTTAGAATATTTGTTAACTATACCCTCAAAGGCTATCTGTCTTCGTAAGCCTAAGCGCTTTATGCCTGTGCAGGTAGTAGATTCAAGGTGGAATAGCACCCGTCAGTCTGACAATATGACCGCTGTAGCCTGTCAGCTGCCATATTGTTTCTTCCGCAATACTTCTGCGGATTATAGTGGTGATACACATGATGTACACCATGGTGATTTTTATTTCAGGCAGTTATTGTCTGGTTTGCTTTATAATGTGTCCTGTATTTCCCAACAGGGTGCATTTCTTTATAATAATGTTAGCTCCATCTGGCCAGTTTATGGCTATGGCCACTGTCCAACTGCTGCTAACATTGGTTATATGGCACCCGTTTGTCTTTATGACCCCCTACCGGTCATATTACTAGGTGTCTTATTGGGTATAGCTGTGTTAATTATTGTTTTTCTTATTTTGTATTTTATGGCGGATAGCAGTGTTAGGTTGCATGAGGCC >A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCGTTTGTTAATGTGTCTTATGCCTATGGAGGTAATGCAAAGCCCGCCTCCATTTGCAAAGACAAT------------ACTTTAACACTCAATAACCCCACCTTCATATCGAAGGAGTCTAATTATGTTGATTATTACTATGAGAGTGAGGCTAATTTCACACTAGAAGGTTGTGATGAATTTATAGTACCGCTCTGTGGTTTTAATGGCCATTCCAAGGGCAGCTCTTCGGATGCTGCCAATAAATATTATACTGACTCTCAGAGTTACTATAATATGGATATTGGTGTCTTATATGGGTTCAATTCGACCTTGGATGTTGGCAACACTGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAATATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCATAAGACAAAGCGCTTTATGCCTGTGCAGGTAGTTGACTCAAGGTGGAGTAGCATCCGCCAGTCAGACAATATGACCGCTGCAGCCTGTCAGCTGCCATATTGTTTCTTTCGCAACACATCTGCGAATTATAGTGGTGGCACACATGATGCGCACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTATATAATGTTTCCTGTATTGCCCAGCAGGGTGCATTTCTTTATAATAATGTTAGTTCCTCTTGGCCAGCCTATGGGTACGGTCATTGTCCAACGGCAGCTAACATTGGTTATATGGCACCTGTTTGTATCTATGACCCTCTCCCGGTCATACTGCTAGGTGTGTTATTGGGTATAGCTGTGTTGACTATTGTGTTTTTGATGTTTTATTTTATGACGGATAGCGGTGTTAGATTGCATGAGGCA >MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCGTTTGTTAATGTGTCTTATGCCTATGGAGGTAATGCAAAGCCCGCCTCCATTTGCAAAGACAAT------------ACTTTAACACTCAATAACCCCACCTTCATATCGAAGGAGTCTAATTATGTTGATTATTACTATGAGAGTGAGGCTAATTTCACACTAGAAGGTTGTGATGAATTTATAGTACCGCTCTGTGGTTTTAATGGCCATTCCAAGGGCAGCTCTTCGGATGCTGCCAATAAATATTATACTGACTCTCAGAGTTACTATAATATGGATATTGGTGTCTTATATGGGTTCAATTCGACCTTGGATGTTGGCAACACTGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAGTATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCATAAGACAAAGCGCTTTATGCCTGTGCAGGTAGTTGACTCAAGGTGGAGTAGCATCCGCCAGTCAGACAATATGACCGCTGCAGCCTGTCAGCTGCCATATTGTTTCTTTCGCAACACATCTGCGAATTATAGTGGTGGCACACATGATGCGCACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTATATAATGTTTCCTGTATTGCCCAGCAGGGTGCATTTCTTTATAATAATGTTAGTTCCTCTTGGCCAGCCTATGGGTACGGTCATTGTCCAACGGCAGCTAACATTGGTTATATGGCACCTGTTTGTATCTATGACCCTCTCCCGGTCATACTGCTAGGTGTGTTATTGGGTATAGCTGTGTTGATTATTGTGTTTTTGATGTTTTATTTTATGACGGATAGCGGTGTTAGATTGCATGAGGCA >MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCGTTTGTTAATGTGTCTTATGCCTATGGAGGTAATGCAAAGCCCGCCTCCATTTGCAAAGACAAT------------ACTTTAACACTCAATAACCCCACCTTCATATCGAAGGAGTCTAATTATGTTGATTATTACTATGAGAGTGAGGCTAATTTCACACTAGAAGGTTGTGATGAATTTATAGTACCGCTCTGTGGTTTTAATGGCCATTCCAAGGGCAGCTCTTCGGATGCTGCCAATAAATATTATACTGACTCTCAGAGTTACTATAATATGGATATTGGTGTCTTATATGGGTTCAATTCGACCTTGGATGTTGGCAACACTGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAGTATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCATAAGACAAAGCGCTTTATGCCTGTGCAGGTAGTTGACTCAAGGTGGAGTAGCATCCGCCAGTCAGACAATATGACCGCTGCAGCCTGTCAGCTGCCATATTGTTTCTTTCGCAACACATCTGCGAATTATAGTGGTGGCACACATGATGCGCACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTATATAATGTTTCCTGTATTGCCCAGCAGGGTGCATTTCTTTATAATAATGTTAGTTCCTCTTGGCCAGCCTATGGGTACGGTCATTGTCCAACGGCAGCTAACATTGGTTATATGGCACCTGTTTGTATCTATGACCCTCTCCCGGTCATACTGCTAGGTGTGTTATTGGGTATAGCTGTGTTGATTATTGTGTTTTTGATGTTTTATTTTATGACGGATAGCGGTGTTAGATTGCATGAGGCA >MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCGTTTGTTAATGTGTCTTATGCCTATGGAGGTAATGCAAAGCCCGCCTCCATTTGCAAAGACAAT------------ACTTTAACACTCAATAACCCCACCTTCATATCGAAGGAGTCTAATTATGTTGATTATTACTATGAGAGTGAGGCTAATTTCACACTAGAAGGTTGTGATGAATTTATAGTACCGCTCTGTGGTTTTAATGGCCATTCCAAGGGCAGCTCTTCGGATGCTGCCAATAAATATTATACTGACTCTCAGAGTTACTATAATATGGATATTGGTGTCTTATATGGGTTCAATTCGACCTTGGATGTTGGCAACACTGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAGTATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCATAAGACAAAGCGCTTTATGCCTGTGCAGGTAGTTGACTCAAGGTGGAGTAGCATCCGCCAGTCAGACAATATGACCGCTGCAGCCTGTCAGCTGCCATATTGTTTCTTTCGCAACACATCTGCGAATTATAGTGGTGGCACACATGATGCGCACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTATATAATGTTTCCTGTATTGCCCAGCAGGGTGCATTTCTTTATAATAATGTTAGTTCCTCTTGGCCAGCCTATGGGTACGGTCATTGTCCAACGGCAGCTAACATTGGTTATATGGCACCTGTTTGTATCTATGACCCTCTCCCGGTCATACTGCTAGGTGTGTTATTGGGTATAGCTGTGTTGATTATTGTGTTTTTGATGTTTTATTTTATGACGGATAGCGGTGTTAGATTGCATGAGGCA >MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCGTTTGTTAATGTGTCTTATGCCTATGGAGGTAATGCAAAGCCCGCCTCCATTTGCAAAGACAAT------------ACTTTAACACTCAATAACCCCACCTTCATATCGAAGGAGTCTAATTATGTTGATTATTACTATGAGAGTGAGGCTAATTTCACACTAGAAGGTTGTGATGAATTTATAGTACCGCTCTGTGGTTTTAATGGCCATTCCAAGGGCAGCTCTTCGGATGCTGCCAATAAATATTATACTGACTCTCAGAGTTACTATAATATGGATATTGGTGTCTTATATGGGTTCAATTCGACCTTGGATGTTGGCAACACTGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAATATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCATAAGACAAAGCGCTTTATGCCTGTGCAGGTAGTTGACTCAAGGTGGAGTAGCATCCGCCAGTCAGACAATATGACCGCTGCAGCCTGTCAGCTGCCATATTGTTTCTTTCGCAACACATCTGCGAATTATAGTGGTGGCACACATGATGCGCACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTATATAATGTTTCCTGTATTGCCCAGCAGGGTGCATTTCTTTATAATAATGTTAGTTCCTCTTGGCCAGCCTATGGGTACGGTCATTGTCCAACGGCAGCTAACATTGGTTATATGGCACCTGTTTGTATCTATGACCCTCTCCCGGTCATACTGCTAGGTGTGTTATTGGGTATAGCTGTGTTGACTATTGTGTTTTTGATGTTTTATTTTATGACGGATAGCGGTGTTAGATTGCATGAGGCA >MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus ATGGGCAGGACGTGCATAGCTATGGCTCCTCGCACACTGCTTTTGCTGATTGGCTGTCAGCTGGTGTTTGGGTTCAATGAACCTCTTAACATCGTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTAGAAAATAACGGTCATCCTAAATTAGATTGGCTAGACCTTGACCCAAAATTGTGTAATTCAGGAAAGATTTCTGCGAAGAGTGGTAACTCTCTCTTCCGGAGTTTTCACTTCACTGATTTTTACAATTATACGGGTGAGGGAGACCAAATTGTATTTTATGAAGGAGTTAATTTTAGTCCCAACCATGGCTTTAAATGCCTGGCTTATGGAGATAATAAAAGATGGATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCCTTTGTTAATGTGCCTTATGCCTATGGGGGTAAAGCCAAGCCCACCTCCATTTGCAAACATAAA------------ACTTTAACACTCAACAACCCCACCTTCATCTCGAAGGAGTCCAATTATGTTGATTATTATTACGAGAGTGAGGCTAATTTCACACTAGCAGGTTGTGATGAATTTATAGTACCGCTCTGTGTTTTTAATGGCCACTCCAAGGGCAGTTCTTCGGACCCTGCCAACAAATATTATATGGACTCGCAGAGTTACTATAATATGGATACTGGTGTCTTATATGGGTTCAACTCCACTTTGGATGTTGGCAATACCGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAATATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCGTAAGCCAAAGCGCTTTATGCCTGTGCAGGTAGTGGATTCAAGGTGGAATAGTACCCGCCAGTCTGACAATATGACCGCTGTAGCTTGTCAGCTGCCATATTGCTTTTTCCGCAATACATCTGCGGATTATAGTGGTGGTACGCATGATGTACACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTACTTAATGTTTCCTGTATCGCCCAGCAGGGTGCATTTCTTTATAATAACGTTAGCTCCTCTTGGCCAGCCTATGGGTATGGCCAGTGTCCAACGGCTGCTAACATTGGTTATATGGCACCTGTTTGTATTTATGACCCATTACCGGTCGTATTACTCGGTGTCTTATTGGGTATAGCTGTGTTAATTATTGTTTTTCTTATTTTGTATTTCATGACGGATAGCGGTGTTAGATTGCATGAGGCA >MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus ATGGCGTGCACAGAT---GCAATGGCACCGCGCACGCTATTATTGGTCTTATCTCTTGGTTATGCATTGGGGTTCAATGAACCTCTTAATGTTGTTTCACATTTAAATGATGACTGGTTTCTTTTTGGCGACAGTAGGTCTGACTGCAACCACATAAATAATCTCAGCCATCAGAATTATAATTATATGGACCTCAACCCAGAATTGTGTAAGTCGGGCAAGATTTCTGCTAAAGCGGGTAATTCCCTCTTTAAAAGTTTTCATTTTACCGACTTCTACAATTATACTGGTGAGGGGTCTCAAATTATATTTTATGAAGGAGTTAATTTTACCCCGTATGTGGGGTTTAAGTGTTTGAATAATGGTGATAATAGTAGGTGGATGGGTAATAAAGCTCGATTTTATACCCAGTTGTATCAGAAGATGGCCCATTATCGGAGCTTGTCTATAATTAATATTACTTATACATATAATGGCAGTGCTGGTCCTGTCTCTATGTGTAAGCATACTGCTAATGGTGCCACTCTGACCTTAAATAACCCTACCTTTATAGGTAAGGAGGCTAGTGCACCTAATTATTATTACGGGAGTGAGGCAAATTTTACACTGCACGGTTGCGATGAGTTTATTGTTCCACTCTGTGTTTTTAATGGCGAGTATCTGTCTAGT---------------AAGTTGTATTATGATGATAGTCAATATTACTATAATATGGATACTGGCGTTTTATACGGGTTTAACTCAACTTTGAATATT---------------ACTATCGGTTTGGATTTAACCTGTATTTATCTCTTATTAACTCCTGGTAATTATAAATCTATCTCTAATGAGTTGTTGCTTACTATGCCCTCAAAAGCTATTTGCCTGCGTAAAGCCAAGGCGTTTACGCCTGTGCAAGTGGTTGATTCTAGATGGCATAGTAATAGGCAATCTGATAATATGACAGCTATAGCCTGTCAATTACCATATTGCTACTTTCGTAACACCACTAGTGATTATAATGGT---GTTTATGATTCGCATCATGGGGATGCGGGTTTTACCAGTGTCTTGGCTGGTCTTATGTATAATGTCTCCTGTATAGCCCAGCAGGGTGCATTTGTTTATAACAATGTTAGTAGCAGTTGGCCACAGTATCCCTATGGACACTGTCCCACGGCAGCTAACATTGGATTTATAGCACCTGTTTGCATGTACGACCCCTTACCGGTCATATTGCTCGGTGTATTATTGGGTATAGCTGTGTTGATTATTGTGTTTTTGTTGTTCTATTTTATGACGGACAGCGGTGTTAGATTGCATGAAATA >MHV_S_3239_17_NA_AFD97612_1_NA_NA_Unknown_Murine_coronavirus ATGGGCTGTATGTGCATAGCTATGGCTCCTCGCACACTGCTCTTGCTGATTGGCTGTCAGCTGGTGTTTGGGTTCAATGAACCTCTTAACATCGTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTGGAAAATAACGGTCATCCTAAATTAGATTGGCTTGATCTTGACCCGAAATTGTGTAATTCAGGAAGAATTTCCGCAAAGAGTGGCAACTCTCTCTTTAGGAGTTTCCATTTTATTGATTTTTACAATTATTCAGGAGAAGGCGACCAAGTTATATTTTATGAAGGAGTTAATTTTAGTCCCAGCCATGGCTTTAAATGCCTGGCTTATGGAGATAATAAAAGATGGATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCCTTTGTTAATGTGTCTTATGCCTATGGAGGTAATGCTAAGCCTACTTCCATTTGCAAGGACAAA------------ACTTTAACACTCAACAACCCCACCTTCATTTCGAAGGAGTCCAATTATGTTGATTATTATTACGAGAGTGAGGCTAATTTCACACTACAAGGTTGTGATGAATTTATAGTACCGCTCTGCGTTTTTAATGGCCATTCCAAGGGCAGCTCTTCGGATCCTGCCAATAAATATTATACTGACTCTCAGAGTTACTATAATATGGATACCGGTGTTTTATATGGGTTCAATTCGACCTTGGATGTTGGCAATACTGTACAAAATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAGTATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCGTAAGCCAAAGAGCTTCATGCCTGTGCAGGTAGTGGATTCAAGGTGGAATAGTACCCGCCAGTCAGACAATATGACTGCTGTAGCTTGTCAGCTGCCATATTGCTTTTTCCGCAACACATCTGCGGATTATAGTGGTGGTACACATGATGTACACCATGGTGATTTTCACTTCAGGCAGTTATTGTCTGGTTTGCTATATAATGTTTCCTGTATTGCCCAACAGGGTGCATTTGTTTACAATAATGTTAGCTCCTCTTGGCCAGCCTATGGGTACGGTCATTGTCCAACGGCAGCTAACATTGGTTATATGGCGCCTGTTTGTATCTATGACCCCCTTCCGGTCATACTGCTAGGTGTATTATTGGGTATAGCTGTGTTGATTATTGTGTTTTTGATGTTTTATTTTATGACGGATAGCGGTGTTAGATTGCATGAGGCA >Parker_HE_YP_003029847_1_NA_NA_Rat_Murine_coronavirus ATGGGCAGAATGTGCATAGCTATGGCTCCTCGCACACTGCTTTTGCTGATTGGCTGTCAGCTGGTGTTAGGGTTCAATGAACCTATTAACATCGTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTAGAAAACAATGGTCACCCTAAATTAGATTGGCTAGACCTCGACCCAAAATTGTGTAATTCAGGAAAGATAGCTGCGAAGAGTGGTAATTCTCTCTTCCGGAGTTTTCACTTTACTGATTTTTACAATTATACGGGTGAGGGAGACCAAATAATATTTTATGAAGGAGTTAATTTTAGTCCCAGCCATGGATTTAAATGCCTGGTTGAAGGAGATAATAAAAAGTGGATGGGCAATAAAGCTCGATTTTATGCCCTATTGTACAAGAAGATGGCCCAATATAGGAGCCTATCTTTTGTTATTGTGCCTTATGCCTATGGAGGTAACGCCAAGCCCACCTCCATTTGCAAAGACAAA------------ACTTTAACACTCAATAATCCCACCTTCATTTCGAAGGAATCTAATTATGTTGATTATTACTATGTGAGTGAGGCTAATTTCACACTACAAGGTTGTGATGAATTCATAGTCCCGCTCTGTGTTTTTAATGGTCATTCCAGGGGCAGTTCTTCGGATCCTGCCAACAAATATTATACTGACTCTCAGAGTTACTATAATATGGATACTGGTGTCCTATATGGCTTCAATTCGACCTTGGATGTAGGCAACACTGCTCAGAATCCAGGTCTTGATCTCACTTGTATGTATCTTGTTTTAACTCCCGGTAATTATAAGGCAGTGTCCTTAGAATATTTGTTAACTATACCCTCAAAGGCTATCTGTCTTCGTAAGCCTAAGCGCTTTATGCCTGTGCAGGTAGTAGATTCAAGGTGGAATAGCACCCGTCAGTCTGACAATATGACCGCTGTAGCCTGTCAGCTGCCATATTGTTTCTTCCGCAATACTTCTGCGGATTATAGTGGTGATACACATGATGTACACCATGGTGATTTTTATTTCAGGCAGTTATTGTCTGGTTTGCTTTATAATGTGTCCTGTATTTCCCAACAGGGTGCATTTCTTTATAATAATGTTAGCTCCATCTGGCCAGTTTATGGCTATGGCCACTGTCCAACTGCTGCTAACATTGGTTATATGGCACCCGTTTGTCTTTATGACCCCCTACCGGTCATATTACTAGGTGTCTTATTGGGTATAGCTGTGTTAATTATTGTTTTTCTTATTTTGTATTTTATGGCGGATAGCAGTGTTAGGTTGCATGAGGCC >RJHM_A_NA_ACN89693_1_NA_USA_Mouse_Murine_coronavirus ATGGGCAGGACGTGCATAGCTATGGCTCCTCGCACACTGCTTTTGCTGATTGGCTGTCAGCTGGTGTTTGGGTTCAATGAACCTCTTAACATCGTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTAGAAAATAACGGTCATCCTAAATTAGATTGGCTAGACCTTGACCCAAAATTGTGTAATTCAGGAAAGATTTCTGCGAAGAGTGGTAACTCTCTCTTCCGGAGTTTTCACTTCACTGATTTTTACAATTATACGGGTGAGGGAGACCAAATTGTATTTTATGAAGGAGTTAATTTTAGTCCCAACCATGGCTTTAAATGCCTGGCTTATGGAGATAATAAAAGATGGATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCCTTTGTTAATGTGCCTTATGCCTATGGGGGTAAAGCCAAGCCCACCTCCATTTGCAAACATAAA------------ACTTTAACACTCAACAACCCCACCTTCATCTCGAAGGAGTCCAATTATGTTGATTATTATTACGAGAGTGAGGCTAATTTCACACTAGCAGGTTGTGATGAATTTATAGTACCGCTCTGTGTTTTTAATGGCCACTCCAAGGGCAGTTCTTCGGACCCTGCCAACAAATATTATATGGACTCGCAGAGTTACTATAATATGGATACTGGTGTCTTATATGGGTTCAACTCCACTTTGGATGTTGGCAATACCGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAATATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCGTAAGCCAAAGCGCTTTATGCCTGTGCAGGTAGTGGATTCAAGGTGGAATAGTACCCGCCAGTCTGACAATATGACCGCTGTAGCTTGTCAGCTGCCATATTGCTTTTTCCGCAATACATCTGCGGATTATAGTGGTGGTACGCATGATGTACACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTACTTAATGTTTCCTGTATCGCCCAGCAGGGTGCATTTCTTTATAATAACGTTAGCTCCTCTTGGCCAGCCTATGGGTATGGCCAGTGTCCAACGGCAGCTAACATTGGTTATATGGCACCTGTTTGTATCTATGACCCTCTCCCGGTCATACTGCTAGGTGTGTTATTGGGTATAGCTGTGTTGATTATTGTGTTTTTGATGTTTTATTTCATGACGGATAGCGGTGTTAGATTGCATGAGGCA >S_HE_ADI59789_1_NA_USA_Mouse_Murine_coronavirus ATGGGCTGTATGTGCATAGCTATGGCTCCTCGCACACTGCTCTTGCTGATTGGCTGTCAGCTGGTGTTTGGGTTCAATGAACCTCTTAACATCTTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTGGAAAATAACGGTCATCCTAAATTAGATTGGCTTGATCTTGACCCGAAATTGTGTAATTCAGGAAGAATTTCCGCAAAGAGTGGCAACTCTCTCTTTAGGAGTTTCCATTTTATTGATTTTTACAATTATTCAGGAGAAGGCGACCAAGTTATATTTTATGAAGGAGTTAATTTTAGTCCCAGCCATGGCTTTAAATGCCTGGCTTATGGAGATAATAAAAGATGGATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCCTTTGTTAATGTGTCTTATGCCTATGGAGGTAATGCTAAGCCTACTTCCATTTGCAAGGACAAA------------ACTTTAACACTCAACAACCCCACCTTCATTTCGAAGGAGTCCAATTATGTTGATTATTATTACGAGAGTGAGGCTAATTTCACACTACAAGGTTGTGATGAATTTATAGTACCGCTCTGCGTTTTTAATGGCCATTCCAAGGGCAGCTCTTCGGATCCTGCCAATAAATATTATACTGACTCTCAGAGTTACTATAATATGGATACCGGTGTTTTATATGGGTTCAATTCGACCTTGGATGTTGGCAATACTGTACAAAATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAGTATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCGTAAGCCAAAGAGCTTCATGCCTGTGCAGGTAGTGGATTCAAGGTGGAATAGTACCCGCCAGTCAGACAATATGACTGCTGTAGCTTGTCAGCTGCCATATTGCTTTTTCCGCAACACATCTGCGGATTATAGTGGTGGTACACATGATGTACACCATGGTGATTTTCACTTCAGGCAGTTATTGTCTGGTTTGCTATATAATGTTTCCTGTATTGCCCAACAGGGTGCATTTGTTTACAATAATGTTAGCTCCTCTTGGCCAGCCTATGGGTACGGTCATTGTCCAACGGCAGCTAACATTGGTTATATGGCGCCTGTTTGTATCTATGACCCCCTTCCGGTCATACTGCTAGGTGTATTATTGGGTATAGCTGTGTTGATTATTGTGTTTTTGATGTTTTATTTTATGACGGATAGCGGTGTTAGATTGCATGAGGCA >SA59_RJHM_NA_ACN89727_1_NA_USA_Mouse_Murine_coronavirus ATGGGCAGGACGTGCATAGCTATGGCTCCTCGCACACTGCTTTTGCTGATTGGCTGTCAGCTGGTGTTTGGGTTCAATGAACCTCTTAACATCGTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTAGAAAATAACGGTCATCCTAAATTAGATTGGCTAGACCTTGACCCAAAATTGTGTAATTCAGGAAAGATTTCTGCGAAGAGTGGTAACTCTCTCTTCCGGAGTTTTCACTTCACTGATTTTTACAATTATACGGGTGAGGGAGACCAAATTGTATTTTATGAAGGAGTTAATTTTAGTCCCAACCATGGCTTTAAATGCCTGGCTTATGGAGATAATAAAAGATGGATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCCTTTGTTAATGTGCCTTATGCCTATGGGGGTAAAGCCAAGCCCACCTCCATTTGCAAACATAAA------------ACTTTAACACTCAACAACCCCACCTTCATCTCGAAGGAGTCCAATTATGTTGATTATTATTACGAGAGTGAGGCTAATTTCACACTAGCAGGTTGTGATGAATTTATAGTACCGCTCTGTGTTTTTAATGGCCACTCCAAGGGCAGTTCTTCGGACCCTGCCAACAAATATTATATGGACTCGCAGAGTTACTATAATATGGATACTGGTGTCTTATATGGGTTCAACTCCACTTTGGATGTTGGCAATACCGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAATATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCGTAAGCCAAAGCGCTTTATGCCTGTGCAGGTAGTGGATTCAAGGTGGAATAGTACCCGCCAGTCTGACAATATGACCGCTGTAGCTTGTCAGCTGCCATATTGCTTTTTCCGCAATACATCTGCGGATTATAGTGGTGGTACGCATGATGTACACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTACTTAATGTTTCCTGTATCGCCCAGCAGGGTGCATTTCTTTATAATAACGTTAGCTCCTCTTGGCCAGCCTATGGGTATGGCCAGTGTCCAACGGCTGCTAACATTGGTTATATGGCACCTGTTTGTATTTATGACCCATTACCGGTCGTATTACTCGGTGTCTTATTGGGTATAGCTGTGTTAATTATTGTTTTTCTTATTTTGTATTTCATGACGGATAGCGGTGTTAGATTGCATGAGGCA >UNKNOWN_AC_000192_HE_YP_209232_1_NA_NA_Unknown_Murine_coronavirus ATGGGCAGTACGTGCATAGCTATGGCTCCTCGCACACTGCTTTTGCTGATTGGCTGTCAGCTGGTGTTTGGGTTCAATGAACCTCTTAACATCGTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTAGAAAATAACGGTCATCCTAAATTAGATTGGCTAGACCTTGACCCAAAATTGTGTAATTCAGGAAAGATTTCTGCGAAGAGTGGTAACTCTCTCTTCCGGAGTTTTCACTTCACTGATTTTTACAATTATACGGGTGAGGGAGACCAAATTGTATTTTATGAAGGAGTTAATTTTAGTCCCAACCATGGCTTTAAATGCCTGGCTTATGGAGATAATAAAAGATGGATGGGCAATAAAGCTGCATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCCTTTGTTAATGTGCCTTATGCCTATGGGGGTAAAGCCAAGCCCACCTCCATTTGCAAACATAAA------------ACTTTAACACTCAACAACCCCACCTTCATCTCGAAGGAGTCCAATTATGTTGATTATTATTACGAGAGTGAGGCTAATTTCACACTAGCAGGTTGTGATGAATTTATAGTACCGCTCTGTGTTTTCAATGGCCACTCCAAGGGCAGTTCTTCGGACCCTGCCAACAAATATTATATGGACTCGCAGAGTTACTATAATATGGATACTGGTGTCTTATATGGGTTGAACTGCACTTTGGATGTTGGCAATACCGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAATATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCGTAAGCCAAAGCGCTTTATGCCTGTGCAGGTAGTGGATTCAAGGTGGAATAGTACCCGCCAGTCTGACAATATGACCGCTGTAGCTTGTCAGCTGCCATATTGCTTTTTCCGCAATACATCTGCGGATTATAGTGGTGGTACGCATGATGTACACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTACTTAATGTTTCCTGTATCGCCCAGCAGGGTGCATTTCTTTATAATAACGTTAGCTCCTCTTGGCCAGCCTATGGGTATGGCCAGTGTCCAACGGCTGCTAACATTGGTTATATGGCACCTGTTTGTATTTATGACCCATTACCGGTCGTATTACTCGGTGTCTTATTGGGTATAGCTGTGTTAATTATTGTTTTTCTTATTTTGTATTTCATGACGGATAGCGGTGTTAGATTGCATGAGGCA
>681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus MGRMCIAMAPRTLLLLIGCQLVFGFNEPINIVSHLNDDWFLFGDSRSDCT YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD QIIFYEGVNFSPSHGFKCLVEGDNNKWMGNKARFYALLYKKMAQYRSLSF VTVPYAYGGNAKPTSICKDK----TLTLNNPTFISKES--VDYYYVSEAN FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNIDTGVLYGFN STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG DFYFRQLLSGLLYNVSCIAQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA >8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCT YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD QIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSF VIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEAN FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFN STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG DFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA >A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus -------------------------------------------------- -------------------------------------------------- ---------------------------MGNKARFYARVYEKMAQYRSLSF VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM APVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA >MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus -------------------------------------------------- -------------------------------------------------- ---------------------------MGNKARFYARVYEKMAQYRSLSF VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA >MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus -------------------------------------------------- -------------------------------------------------- ---------------------------MGNKARFYARVYEKMAQYRSLSF VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA >MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus -------------------------------------------------- -------------------------------------------------- ---------------------------MGNKARFYARVYEKMAQYRSLSF VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA >MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus -------------------------------------------------- -------------------------------------------------- ---------------------------MGNKARFYARVYEKMAQYRSLSF VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM APVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA >MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA >MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus MACTD-AMAPRTLLLVLSLGYALGFNEPLNVVSHLNDDWFLFGDSRSDCN HINNLSHQNYNYMDLNPELCKSGKISAKAGNSLFKSFHFTDFYNYTGEGS QIIFYEGVNFTPYVGFKCLNNGDNSRWMGNKARFYTQLYQKMAHYRSLSI INITYTYNGSAGPVSMCKHTANGATLTLNNPTFIGKEASAPNYYYGSEAN FTLHGCDEFIVPLCVFNGEYLSS-----KLYYDDSQYYYNMDTGVLYGFN STLNI-----TIGLDLTCIYLLLTPGNYKSISNELLLTMPSKAICLRKAK AFTPVQVVDSRWHSNRQSDNMTAIACQLPYCYFRNTTSDYNG-VYDSHHG DAGFTSVLAGLMYNVSCIAQQGAFVYNNVSSSWPQYPYGHCPTAANIGFI APVCMYDPLPVILLGVLLGIAVLIIVFLLFYFMTDSGVRLHEI >MHV_S_3239_17_NA_AFD97612_1_NA_NA_Unknown_Murine_coronavirus MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT YVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGD QVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF VNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEAN FTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFN STLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG DFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYM APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA >Parker_HE_YP_003029847_1_NA_NA_Rat_Murine_coronavirus MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCT YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD QIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSF VIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEAN FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFN STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG DFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA >RJHM_A_NA_ACN89693_1_NA_USA_Mouse_Murine_coronavirus MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA >S_HE_ADI59789_1_NA_USA_Mouse_Murine_coronavirus MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIFSHLNDDWFLFGDSRSDCT YVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGD QVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF VNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEAN FTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFN STLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG DFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYM APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA >SA59_RJHM_NA_ACN89727_1_NA_USA_Mouse_Murine_coronavirus MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA >UNKNOWN_AC_000192_HE_YP_209232_1_NA_NA_Unknown_Murine_coronavirus MGSTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKAAFYARVYEKMAQYRSLSF VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGLN CTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
Reading sequence file /data//pss_subsets/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/fubar/fasta/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1
Found 15 sequences of length 1329
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 9.4%
Found 191 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0% 77.4%100.0%
Using a window size of 80 with k as 11
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 200 polymorphic sites
**p-Value(s)**
----------
NSS: 0.00e+00 (1000 permutations)
Max Chi^2: 5.00e-03 (1000 permutations)
PHI (Permutation): 3.00e-03 (1000 permutations)
PHI (Normal): 1.71e-03
#NEXUS
[ID: 8943948122]
begin taxa;
dimensions ntax=15;
taxlabels
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus
MHV_S_3239_17_NA_AFD97612_1_NA_NA_Unknown_Murine_coronavirus
Parker_HE_YP_003029847_1_NA_NA_Rat_Murine_coronavirus
RJHM_A_NA_ACN89693_1_NA_USA_Mouse_Murine_coronavirus
S_HE_ADI59789_1_NA_USA_Mouse_Murine_coronavirus
SA59_RJHM_NA_ACN89727_1_NA_USA_Mouse_Murine_coronavirus
UNKNOWN_AC_000192_HE_YP_209232_1_NA_NA_Unknown_Murine_coronavirus
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus
;
end;
begin trees;
translate
1 681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus,
2 MHV_S_3239_17_NA_AFD97612_1_NA_NA_Unknown_Murine_coronavirus,
3 Parker_HE_YP_003029847_1_NA_NA_Rat_Murine_coronavirus,
4 RJHM_A_NA_ACN89693_1_NA_USA_Mouse_Murine_coronavirus,
5 S_HE_ADI59789_1_NA_USA_Mouse_Murine_coronavirus,
6 SA59_RJHM_NA_ACN89727_1_NA_USA_Mouse_Murine_coronavirus,
7 UNKNOWN_AC_000192_HE_YP_209232_1_NA_NA_Unknown_Murine_coronavirus,
8 8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus,
9 A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus,
10 MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus,
11 MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus,
12 MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus,
13 MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus,
14 MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus,
15 MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:5.782277e-03,(((2:6.250088e-04,5:1.378368e-03)1.000:4.384808e-02,(((9:8.374804e-04,13:8.483244e-04)0.914:2.863582e-03,10:8.025373e-04,11:8.219522e-04,12:8.282963e-04)0.897:2.763095e-02,15:6.832505e-01)0.620:2.676815e-02)0.620:9.943413e-03,(4:6.834026e-04,(6:5.864482e-04,7:5.605053e-03,14:5.877993e-04)1.000:1.424100e-02)0.999:2.766754e-02)1.000:9.450870e-02,(3:5.733128e-04,8:5.787140e-04)0.981:3.141800e-03);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:5.782277e-03,(((2:6.250088e-04,5:1.378368e-03):4.384808e-02,(((9:8.374804e-04,13:8.483244e-04):2.863582e-03,10:8.025373e-04,11:8.219522e-04,12:8.282963e-04):2.763095e-02,15:6.832505e-01):2.676815e-02):9.943413e-03,(4:6.834026e-04,(6:5.864482e-04,7:5.605053e-03,14:5.877993e-04):1.424100e-02):2.766754e-02):9.450870e-02,(3:5.733128e-04,8:5.787140e-04):3.141800e-03);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -4059.59 -4082.26
2 -4060.52 -4082.39
--------------------------------------
TOTAL -4059.95 -4082.33
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.960602 0.007811 0.792385 1.137121 0.952958 926.70 1081.49 1.000
r(A<->C){all} 0.094895 0.000514 0.050050 0.136239 0.093599 853.85 867.14 1.000
r(A<->G){all} 0.243614 0.000778 0.192406 0.301975 0.242388 803.17 989.25 1.002
r(A<->T){all} 0.074763 0.000197 0.050808 0.104558 0.074004 1115.77 1165.61 1.000
r(C<->G){all} 0.110207 0.000535 0.067374 0.156350 0.108718 687.95 774.38 1.000
r(C<->T){all} 0.405297 0.001036 0.343873 0.470783 0.405172 780.61 833.83 1.000
r(G<->T){all} 0.071223 0.000206 0.044967 0.100101 0.070492 1136.62 1206.31 1.000
pi(A){all} 0.251114 0.000116 0.231695 0.273109 0.251028 1039.61 1087.09 1.000
pi(C){all} 0.185638 0.000085 0.168074 0.203668 0.185686 1045.73 1171.41 1.001
pi(G){all} 0.217639 0.000106 0.197029 0.237841 0.217456 1090.43 1113.08 1.000
pi(T){all} 0.345608 0.000137 0.322877 0.368387 0.345575 1045.13 1103.29 1.000
alpha{1,2} 0.235626 0.001746 0.164660 0.325512 0.231239 1067.27 1193.31 1.000
alpha{3} 3.232228 1.666248 1.283614 5.837711 2.956414 1225.80 1252.38 1.000
pinvar{all} 0.086540 0.003210 0.000105 0.190028 0.079067 1135.83 1235.34 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
[2J[H /HYPHY 2.3.14.20190214beta(MP) for Linux on x86_64\ ***************** TYPES OF STANDARD ANALYSES ***************** (1) Selection Analyses (2) Evolutionary Hypothesis Testing (3) Relative evolutionary rate inference (4) Coevolutionary analysis (5) Basic Analyses (6) Codon Selection Analyses (7) Compartmentalization (8) Data File Tools (9) Miscellaneous (10) Model Comparison (11) Kernel Analysis Tools (12) Molecular Clock (13) Phylogeny Reconstruction (14) Positive Selection (15) Recombination (16) Selection/Recombination (17) Relative Rate (18) Relative Ratio (19) Substitution Rates Please select type of analyses you want to list (or press ENTER to process custom batch file):[2J[H***************** FILES IN 'Selection Analyses' ***************** (1) [MEME] Test for episodic site-level selection using MEME (Mixed Effects Model of Evolution). (2) [FEL] Test for pervasive site-level selection using FEL (Fixed Effects Likelihood). (3) [SLAC] Test for pervasive site-level selection using SLAC (Single Likelihood Ancestor Counting). (4) [FUBAR] Test for pervasive site-level selection using FUBAR (Fast Unconstrained Bayesian AppRoximation for inferring selection). (5) [BUSTED] Test for episodic gene-wide selection using BUSTED (Branch-site Unrestricted Statistical Test of Episodic Diversification). (6) [aBSREL] Test for lineage-specific evolution using the branch-site method aBS-REL (Adaptive Branch-Site Random Effects Likelihood). (7) [RELAX] Test for relaxation of selection pressure along a specified set of test branches using RELAX (a random effects test of selection relaxation). Please select the analysis you would like to perform (or press ENTER to return to the list of analysis types): Analysis Description -------------------- Perform a Fast Unbiased AppRoximate Bayesian (FUBAR) analysis of a coding sequence alignment to determine whether some sites have been subject to pervasive purifying or diversifying selection. v2.1 introduces two more methods for estimating the posterior distribution of grid weights: collapsed Gibbs MCMC (faster) and 0-th order Variation Bayes approximation (fastest). Please note that a FUBAR analysis generates a cache and a results JSON file in the same directory as directory as the original alignment. HyPhy needs to have write privileges to this directory. For example if the original file is in /home/sergei/FUBAR/data/pol.nex then at the end of a FUBAR run, there will also exist FUBAR-generated files /home/sergei/FUBAR/data/pol.nex.FUBAR.json, /home/sergei/FUBAR/data/pol.nex.fubrar.cache. They also provide checkpointing so that a partially completed analysis can be restarted. - __Requirements__: in-frame codon alignment (possibly partitioned) and a phylogenetic tree (one per partition) - __Citation__: FUBAR: a fast, unconstrained bayesian approximation for inferring selection (2013), Mol Biol Evol. 30(5):1196-205 - __Written by__: Sergei L Kosakovsky Pond - __Contact Information__: spond@temple.edu - __Analysis Version__: 2.1 ####Choose Genetic Code 1. [**Universal**] Universal code. (Genebank transl_table=1). 2. [**Vertebrate mtDNA**] Vertebrate mitochondrial DNA code. (Genebank transl_table=2). 3. [**Yeast mtDNA**] Yeast mitochondrial DNA code. (Genebank transl_table=3). 4. [**Mold/Protozoan mtDNA**] Mold, Protozoan and Coelenterate mitochondrial DNA and the Mycloplasma/Spiroplasma code. (Genebank transl_table=4). 5. [**Invertebrate mtDNA**] Invertebrate mitochondrial DNA code. (Genebank transl_table=5). 6. [**Ciliate Nuclear**] Ciliate, Dasycladacean and Hexamita Nuclear code. (Genebank transl_table=6). 7. [**Echinoderm mtDNA**] Echinoderm mitochondrial DNA code. (Genebank transl_table=9). 8. [**Euplotid Nuclear**] Euplotid Nuclear code. (Genebank transl_table=10). 9. [**Alt. Yeast Nuclear**] Alternative Yeast Nuclear code. (Genebank transl_table=12). 10. [**Ascidian mtDNA**] Ascidian mitochondrial DNA code. (Genebank transl_table=13). 11. [**Flatworm mtDNA**] Flatworm mitochondrial DNA code. (Genebank transl_table=14). 12. [**Blepharisma Nuclear**] Blepharisma Nuclear code. (Genebank transl_table=15). 13. [**Chlorophycean mtDNA**] Chlorophycean Mitochondrial Code (transl_table=16). 14. [**Trematode mtDNA**] Trematode Mitochondrial Code (transl_table=21). 15. [**Scenedesmus obliquus mtDNA**] Scenedesmus obliquus mitochondrial Code (transl_table=22). 16. [**Thraustochytrium mtDNA**] Thraustochytrium Mitochondrial Code (transl_table=23). 17. [**Pterobranchia mtDNA**] Pterobranchia Mitochondrial Code (transl_table=24). 18. [**SR1 and Gracilibacteria**] Candidate Division SR1 and Gracilibacteria Code (transl_table=25). 19. [**Pachysolen Nuclear**] Pachysolen tannophilus Nuclear Code (transl_table=26). >Please choose an option (or press q to cancel selection): >Select a coding sequence alignment file (`/usr/local/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/`) >A tree was found in the data file: `(C1,(((C10,C13),(((C3,C7),C4,C5,C6),C9)),(C12,(C14,C15,C8))),(C11,C2))` >Would you like to use it (y/n)? >Loaded a multiple sequence alignment with **15** sequences, **443** codons, and **1** partitions from `/data//pss_subsets/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/fubar/results/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1.fna` > FUBAR will write cache and result files to _/data//pss_subsets/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/fubar/results/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1.fna.FUBAR.cache_ and _/data//pss_subsets/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/fubar/results/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1.fna.FUBAR.json_, respectively > Number of grid points per dimension (total number is D^2) (permissible range = [5,50], default value = 20, integer): ####Posterior estimation method 1. [**Metropolis-Hastings**] Full Metropolis-Hastings MCMC algorithm (slowest, original 2013 paper implementation) 2. [**Collapsed Gibbs**] Collapsed Gibbs sampler (intermediate speed) 3. [**Variational Bayes**] 0-th order Variational Bayes approximations (fastest, recommended default) >Please choose an option (or press q to cancel selection):> The concentration parameter of the Dirichlet prior (permissible range = [0.001,1], default value = 0.5): ### Obtaining branch lengths and nucleotide substitution biases under the nucleotide GTR model * Log(L) = -4141.79, AIC-c = 8347.69 (32 estimated parameters) * Tree length (expected substitutions/site) for partition 1 : 0.532 ### Computing the phylogenetic likelihood function on the grid * Determining appropriate tree scaling based on the best score from a 20 x 20 rate grid * Best scaling achieved for * synonymous rate = 2.815 * non-synonymous rate = 0.571 * Computing conditional site likelihoods on a 20 x 20 rate grid ### Running an iterative zeroth order variational Bayes procedure to estimate the posterior mean of rate weights * Using the following settings * Dirichlet alpha : 0.5 ### Tabulating site-level results | Codon | Partition | alpha | beta |Posterior prob for positive selection| |:--------------:|:--------------:|:--------------:|:--------------:|:-----------------------------------:| | 204 | 1 | 1.186 | 9.768 | Pos. posterior = 0.9173 | ---- ## FUBAR inferred 1 sites subject to diversifying positive selection at posterior probability >= 0.9 Of these, 0.08 are expected to be false positives (95% confidence interval of 0-1 )
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
