--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -38297.29 -38315.68
2 -38297.57 -38314.14
--------------------------------------
TOTAL -38297.42 -38315.19
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 12.189746 0.239712 11.303160 13.249910 12.172940 1027.40 1036.94 1.002
r(A<->C){all} 0.183159 0.000062 0.167276 0.198417 0.183099 376.61 706.55 1.000
r(A<->G){all} 0.273996 0.000087 0.255160 0.291219 0.273827 502.00 508.10 1.002
r(A<->T){all} 0.095238 0.000021 0.085959 0.103832 0.095221 703.00 812.53 1.000
r(C<->G){all} 0.120400 0.000051 0.106770 0.134523 0.120397 719.08 822.91 1.000
r(C<->T){all} 0.268801 0.000075 0.251500 0.285372 0.268645 516.51 569.04 1.002
r(G<->T){all} 0.058406 0.000015 0.050413 0.065507 0.058439 904.98 961.84 1.000
pi(A){all} 0.247913 0.000016 0.239245 0.254959 0.247983 494.71 504.91 1.000
pi(C){all} 0.190849 0.000011 0.184871 0.197486 0.190765 683.48 695.42 1.000
pi(G){all} 0.196018 0.000015 0.188050 0.203113 0.195908 627.26 645.07 1.000
pi(T){all} 0.365220 0.000024 0.355768 0.374912 0.365189 530.56 556.09 1.001
alpha{1,2} 0.525910 0.000551 0.479090 0.568085 0.525167 1066.28 1197.92 1.001
alpha{3} 4.578533 0.378930 3.458001 5.782537 4.526577 1355.44 1428.22 1.000
pinvar{all} 0.003815 0.000007 0.000002 0.008887 0.003352 1280.72 1338.79 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
-- Starting log on Thu Oct 27 00:04:09 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.14 sec, SCORE=998, Nseq=18, Len=1552
C1 ---MFIVFLISYTTFLIPY-------------TATTTCFSGPTTENK-LN
C2 -----MLILFVFLPFITAD-----------------TCLNFTNLAAPAYN
C3 -----MLILFVFLPFITAD-----------------TCLNFTNLAAPAYN
C4 MLRNKKFLSLFVFSVVLPCAY-----------SNTGTCSNTINRFMY-LK
C5 MLRNKKFLSLFVFSVVLPCAY-----------SNTGTCSSTINRFMY-LK
C6 ----MWAILLILPAVLA------RPSCI-KS-SVSLSSIEHNVTYQS-FV
C7 -MILSLLLLVIAVCVNNNYAWLGLQRNAIPPSNQDGECGGDPGKLPN-LN
C8 ----MLFLAVYAAELLVLITQIPAVFSYG---GERFTCSPNYASLPN-LN
C9 ----MLSLAVYFAELLVIISYLPDLVT-----GDLNGCADGHNRLPN-LN
C10 ----MLSLAIYIAEILAFLQ-LPDLTTGAP--NKDGDCGDGYNRLPN-LN
C11 ----MLLTVVLSLALIACDASATRPECFANS-NFQLYPRNHTVNITS-LS
C12 ----MVVLLFVMFSLVVAD----RPNCYLP--QYSYTISPATITNTSYFN
C13 ----MVVLLFAILSIALAD----RPLCTINTGNYVLNPIQANITYTVVNS
C14 ----MTRLMCLLMSLLIFVRGCEAQFVDMSPASNNSECLDSQVDAAAFSK
C15 ---MFIVFLISYTTFLIPY-------------TATTTCFSGPTIENK-LN
C16 ----MKILIFAFLVTLV---------------KAQEGCGVINLKTQPTLT
C17 -MTYSVSLLMCLLTFIGAN----AKIVSIPGGVGTGACPQVDMQPSYFIK
C18 ----MTHLMFLLMFLLTPI----RGDVDLGPDSTRDTCDEVVVQVSA-FQ
C1 IS-------SGSRGVY-YPDDIFR---------S-NVSVLVTGRFLRFNT
C2 IA------SSSRRGVY-YPDDIFR---------S-DFLHLVNDYFLPFGS
C3 IA------SSSRRGVY-YPDDIFR---------S-DFLHLVNDYFLPFGS
C4 LGLPESVNDAYVSGYLPVRDNWTCS------AGF-WQYYNAHAIFMSYYS
C5 LGLPESVNDAYVSGYLPVRDNWTCS------AGF-WQYYNAHAIFMSYYS
C6 LS---------KVSCL-LPDPFIA----------YSGQTLKQSIYYADTT
C7 LGLPPN-KTVFVSGYLPLHKGWVCPTHPLGGGGYGTTFNDIHAIYWSYHS
C8 LGLPPN-STVLVSGYLPRPGDWVC------YTGT-TTHDNIRGVFWSYYS
C9 LGLPPN-STVFVSGYLPRKNGWECPTINNQYGGS-TNYENVHGIFWSYHS
C10 LGLPPN-STVFVSGYLPQKTGWVCP--ENKEAGA-TSYEGVHGVFWSYYA
C11 VN---------VANLL-LPDPYIA----------YSGQTLRQNLFMADLS
C12 VN---------PISIV-VPEFSVA----------RTNLVVRQRLQVAAYD
C13 IN---------PVSLV-VPEFSIA----------RTNLVVRQRLYVA-AT
C14 LMWPYPIDPSKVDGII-YPVGRTY----------SNITLSYTGLFPLQGD
C15 IS-------SGSRGVY-YPDDIFR---------S-NVSVLVTGRFLRFNT
C16 QV------SSSRRGVY-YNDDIFR---------S-DVLHLTQDYFLPFHS
C17 HNWPEPIDMNKADGVI-YPNGRTY----------SNITLQTTNLFPRNGD
C18 KDWPQPINPLFADGII-YPTGRSY----------SNISLSYQGLFPRQGD
.
C1 TLTWYN------S---WN----------QAYSSPVLPFGHG--VYFST--
C2 NVTQFY------T---QG----------TNIDNPTLPFRDG--VYFAA--
C3 NVTQFY------T---QG----------TNIDNPTLPFRDG--VYFAA--
C4 TAMDFAIGVGSSKSYN------------TKWGLYFWQKNNGYRAVFRICK
C5 TAMDFAIGVGSSKSYN------------TKWGLYFWQKNNGYRAVFRICK
C6 NVTVYPVTPYKKD--SKA----------TMYNTTQVLVGNG--LFVHTYM
C7 TANAVELAVSSGNGSVTR----------D-WSLYVHHSNNQGYMYFKICR
C8 HGSAVAIGISNKDQTTTP----------DQWALFAHHSNNGGQFYLRICK
C9 TAQRFELGVSNKDQLVNT----------NRWALYVYQNNNEGVLKLRICK
C10 TGQDVEIGVSNFRQLNNT----------NRWALYVHQKNNDHVLHFRICK
C11 RTIIYPITPPAKDS-TGG----------YIYNTTILPVASG--LFVHTWM
C12 -FTKIPITPPHRS----------------IFNNTYFRVGDG--ILVNTHM
C13 NFTRIPITPPGRA---------------VIFNNTYFDAEDG--FFVNTHM
C14 LGTQYLYSVSHAVGHDGDPTTAYI----SNYSLLVNAFDNGFVVRIGAAA
C15 TLTWYN------S---WN----------QAYSSPVLPFGHG--VYFST--
C16 NLTQYFSLNIESD---KI----------VYFDNPILKFGDG--VYFAA--
C17 LGTQYVYSASNEKSRTSNVAFI------SNYSYYGNPFGDGIVIRIGQNS
C18 LGRQYIYSVTHAGDSTLYPPQGIGKHFISNYSAETLPFGNGFVVRIGFSA
.
C1 IDKSNVVRGW--------------IFGTTLDNTTQSA---------LLV-
C2 TEKSNIVRGW--------------IFGSTLDSTSQSA---------IIL-
C3 TEKSNIVRGW--------------IFGSTLDSTSQSA---------IIL-
C4 W-DSKIEPSFQPSNQQARECLINKEFYMGFGHAKNQIFGVSWSGNRVTLH
C5 W-DSKIEPSFKPSNQQARECLINKEFYMGFGHALNQIFGVSWSGNRVTLH
C6 YREQDSSTY--------CQEPFGVVFGTTFEQDRIAI---------IMIV
C7 W-GAVYPLNLSPNHNRG-DCLVNRKFNFRFLHGANQVLGVTWSSNYVTLY
C8 WLNGG-NLDWATESSRG-LCIVNRKFRFQFSHAAGQVIGVTWSSNVVTFY
C9 WLRGQYSLQWLHGARHG-QCAVDRAFNFRFVHAENQVLGVTWSSNYVTFY
C10 WLAGTYTPQSRPWSRYG-QCAVDKRISFTFEHQGNQVLGVTWSSNYVTFY
C11 YRQESTSRTY-------CQEPFGVAFGDTFIQDRIAI---------VIIA
C12 YHRTNIATNLG-SSFYGCQEPFGAAFGNTFVNEPITL---------VMFY
C13 YHTNNIATSPNKPNFYGCQEPFGVAFGNTFENEPITL---------VMVY
C14 NSTGTIVISPSVQTKIKKAYP-AFILGSSLTNTSAGL--PLYANYSLTII
C15 IDKSNVVRGW--------------IFGTTLDNTTQSA---------LLV-
C16 TEKSNVIRGW--------------VFGSTFDNTTQSA---------IIV-
C17 NKTGSVIVGTAQTTIKKIYPA--LMLGSSFGNFSVNNKSGAYFNHTLLIL
C18 NKTGSLVISPTTSKVIKKIYP-AFMLGTAVTSFAHGH-AGRYLNHTLVIL
: . : .
C1 ------------NNGSAITIEVC-YFQFCDNPAFIISGGAQTN-TAIYIN
C2 ------------NNSTNLIVRVC-NFELCKVPLFVVFKSNNSQLSHLFSD
C3 ------------NNSTNLIVRVC-NFELCKVPLFVVFKSNNSQLSHLFSD
C4 TLDKVVSFFVEGADAWDYASYRCANGYSCA--HQVVYTPVTLRITTVPEG
C5 TLDKVVSFFVEGADTWDYASYRCANGYSCA--HQVVYTPVTLRITTVPQG
C6 PGNLGSWPTVSKPTTIKVYIIVGSNATICAYPAFNRWGPAG---QFYADD
C7 GLNNTYRFYL--HNNWERATVRCHTKQSCA--FFPVENVTTLNITTNGEG
C8 G-SRSYRYYL--TNNWNRVDVKCVNYPTCI--INPVRNITTFNVTTNAQG
C9 GINGSYRYYI--PNDWFRVSVKCENKYVCA--IYPVYNQTTLNITTNAKG
C10 GISKSYRYFL--KNDWYRVTVKCLNKYACA--LYPVYNQTTLNITTNARG
C11 PDNLGSWNQVSYRNVTTVHLVVCSNATLCINPGFNRWGPAG---NIIASN
C12 AGNVGSWSSLVTQQQANITIVSCDNATLCANPFFLRWGPGVIR-SFTISN
C13 AGNIGSWTNTVTQTSANITIVSCDNATLCSNPLYLRWGPGGLP-GYVIKD
C14 PDGCGTVLHAFYCILQPRTQNRCPGNGGYK--AYFVYETIHNDCVPAINK
C15 ------------NNGSAITIEVC-YFQFCDNPAFIISGGAQTN-TAIYIN
C16 ------------NNSTHIIIRVC-YFNLCKDPMYTVSAGTQVS-SWVYQS
C17 PSKCGTVFQVAYCLLQPRTDSYCPGNANYV--SYALIDSPT-DCTSADES
C18 PESCGTSLTVFYCILEPRNGTRCPNHQDYT--SYVIWETPHLDCGSSVNR
C1 LRN--CTYVDTLRDLPL-SFAEVDGGFKHLREFVFKNSDGFLHIYGAYQ-
C2 SFN--CTFEYVSRAFSL-DIREQSGNFVDLREFVFRNRNGFLHIYEGYE-
C3 SFN--CTFEYVSRAFSL-DIREQSGNFVDLREFVFRNRNGFLHIYEGYE-
C4 IRS-YDLCTNCSGFPEH-VFAVLDGGEIPP-NFDFTN---WFYLTNASS-
C5 IRS-YDLCTNCSGFPEH-VFAVLDGGEIPP-NFDFTN---WFYLTNASS-
C6 AFV--NHGDSCFVNNTF-EIPLNTSRI----NLAFRFNDGNLLLYHSRW-
C7 LIESYDVCADCGGFPVH-VFPVLEHGYIPN-DFSFSN---WFMLSNTST-
C8 LFQSYTVCDDCNGFPQH-VFAVLDGGYIPS-EFGLDN---WYVLSNTST-
C9 LIKEYSVCESCNGFPAH-VFPVLEGGKIPA-DFDFTN---WFYLSNTST-
C10 LIQSYSVCDSCNGFPAH-VFPVLEGGKIPA-DFDFTN---WFYLTNSST-
C11 ALV--DHSNSCFVNNSF-NVSISTSRI----NLAFLFKDGDLLIYHSNW-
C12 AFQ--CHGNYTFYDTKLVNFTVSTARY----NLAFTFADGDIFMY--YA-
C13 AFH--CHGDYTFYDSKIINFSVDSSRY----NFAFSFADGDIFMY--YA-
C14 --N------ASLNSFKT-FFDLVNCTFFDSWDITADEVKEWFGITQDTQG
C15 LRN--CTYVDTLRDLPL-SFEDVDGGFKHLREFVFKNSDGFLHIYGAYQ-
C16 AFN--CTYDRVKKSFQL-DTSPKTGNFTDLREFVFKNRDGFFTVYQTYT-
C17 KRR------NGLEDIKK-YFNLVNCTYFEEFNVTADERAEWFGITQDSQG
C18 --N------ATLNSFKV-SFNLRQCKFMRTYNISDDENQEWFGITQNAQG
:. :
C1 --PHDLDIGAPAALPAQFLPLKPLWKLPLGLNITNYKVV----TTLKP--
C2 --AISIVRGLPAGFNV----LKPLLKIPFGLNVTSFKTF----LTVYR--
C3 --AISIVRGLPAGFNV----LKPLLKIPFGLNVTSFKTF----LTVYR--
C4 --PVSGRVVGVQPLQ-----LLCLWPIPALLGTATDITFDRNGTSDVRCN
C5 --PVSGRVVGVQPLQ-----LLCLWPIPALLGTATDITFDRNGTSDVRCN
C6 --LPTSGLNLLEDTP-----LHFYMSVGVGANLPNAQFF----QSLSR--
C7 --FLQGKLVSTQPLK-----LMCLWPVPSLLANDEKIFFN---ASGATCN
C8 --VLDGRVLTNQPLL-----VACLWPVPSLLSNDNPIHFNMSLNTGVNCN
C9 --LVAGRVVGIQPLR-----LLCLWPVPSTTANDDKIYFN---TTGANCN
C10 --LVAGRVVGIQPLK-----LLCLWPVPSITANDDKIYFN---TTGANCN
C11 --LPKGSFDFNQSFP-----LQYFMTLPVGGNLPRAQFF----QSIVRQG
C12 --ALGDSLNLPTAYP-----LQPYLRIPAGFKPDVVQFF----QAITRP-
C13 --PLGDSQNVAKAFP-----LQPYLRIPAGFKPKRAQFF----QAIIRK-
C14 VHLYSSRKGDLYGGN-----MFRFATLPV---YDAIKYY----TVIPR--
C15 --PYDLAIGATAALPAQFLPLKPLWKLPLGLNITNYKVV----TTLKP--
C16 --PVNLLRGLPSGLSV----LKPILKLPFGINITSFRVV----MAMFS--
C17 VHLYTSRKNGFNSNN-----LFLFASVPI---YDKINYY----TVIPR--
C18 VHLYSSRKGDLYGGN-----MFLFDTLPV---YETLKYY----TVIPR--
: :
C1 --------TNQAFQAAYIVGNLKHTTMMLSFNENG-----TMSNAID---
C2 ----VAAGSISVASSAYFVGYLKPLTFMLSYDLNG-----TINNAVD---
C3 ----VAAGSISVASSAYFVGYLKPLTFMLSYDLNG-----TINNAVD---
C4 GFSSNATADAMRFSLNFTENGVFAKEGVITLKTVSNTFKFSCSNSSTYTS
C5 GFSSNATADAMRFSLNFTENGVFAKEGVITLKTVSNTFKFSCSNSSTYTR
C6 SLDGSGDGKCFSAQNNLYIAPIVQRELLVAYSDAG-----IPTKVAD---
C7 GYQFDGVADAIRFSLNFSSDQVFNGVNNIVFDVEGGTFEFFCTNDTSVNP
C8 GYSEVREVSHLRFALNFTNQQVLNGVHNIDLLGDTFNFTFTCTNNSDITK
C9 GFVGEGVADALRFSLNFTSNQVLNGVHNIILESTSSKFTFTCRNDSESTF
C10 GFVGEGVADALRFSLNFTANQILNGVHNIILEGTEAKFTFTCRNDSESTL
C11 GTNNGADDRCVDFNISLHIAHLVNRDLLVSYFNNG-----SVANAAD---
C12 -NGESAEVACASSTVSWYVSRLYYKELLVGYDSYS-----SIVNVSF---
C13 -TAEDAEFQCSRYTTSWYVSYLKYHELLVGYDANS-----IISNVST---
C14 --SFRAKANRRESWAAFYVYKLHQLTYLLDFSVDG-----YIRRTID---
C15 --------TNQAFQAAYIVGNLKHTTMMLSFNENG-----TMSNAID---
C16 ----KTTSNYVPESAAYYVGNLKQSTFMLSFNQNG-----TIVDAVD---
C17 --SIITPANQRSAWAAFYVYPLHQLSYLLNFDVNG-----YITQAAD---
C18 --SLRSRLNERQAWAAFYVYSLHKLTYLLDFSVDG-----YVRRAID---
: :
C1 ----CSQDPLAELKCTLKQF---DVGKGIYQTSNFRVQPTVDVARFPNIT
C2 ----CSQDPLAELKCTIKNF---NVSKGIYQTSNFRVSPTREVVRFPNIT
C3 ----CSQDPLAELKCTIKNF---NVSKGIYQTSNFRVSPTREVVRFPNIT
C4 PY-VIPFGHIDQPYYCFTTFYINETTGTTATSFVGMLPPIVREFVITRLG
C5 PY-VIPFGHIDQPYYCFTTFFTNETTGATATSFVGMLPPIVREFVITRLG
C6 ----CSLNAGEELFCVTGTF---DPPTGVYPLSRYRAQLS-GSVHITQQL
C7 TYRYVPFGQLTEIYRCFVET---TAENGTHTTFVGILPPVVREIVVSRLG
C8 GERFVPFGFLDNVYRCFVYF---DVGNGTVNKFVGILPPVVKEIVISKFG
C9 YR--VPFGETGQVYYCFIFT---EAGNQSYNTFVGILPPVLKEIVISRYG
C10 FR--VPFGVTGQVYYCFVFT---ESRNQSYNTFVGILPPILKEIVISRYG
C11 ----CAESASEELYCVTGSF---QPPTGVYPLSRYRAQVD-GFVRVTQRG
C12 ----CSSDAESELQCLLGTF---APANGVYSLSNFRSSPT-DNVRITNSA
C13 ----CSFDAESELQCLLGTF---TPANGVYSLSNFRSSPV-DTVRITNSA
C14 ----CGHDDLSQLHCSYTSF---EVDTGVYSVSSYEASAT-GTFIEQPNA
C15 ----CSQDPLAELKCTLKQF---DVGKGIYQTSNFRVQPTVDVARFPNIT
C16 ----CSQDPLAELKCTTKSF---NVSKGIYQTSNFRVSPVTEVVRFPNIT
C17 ----CGYNDYTQLVCSYGDF---NMKSGVYSTSYYSAKPV-GAYYEAHVY
C18 ----CGYDDVAQLFCSYESF---DVDSGVYSVSSFEAQPR-GYFVEQPHS
. :
C1 NVC--PFDKVFNATRFPSVYAWERTKISD-----------------CVAD
C2 NRC--PFDSIFNASRFPSVYAWERTKISD-----------------CVAD
C3 NRC--PFDSIFNASRFPSVYAWERTKISD-----------------CVAD
C4 DVYLNGYRIFSVGEVVSVNFNISSTDHRDFWTVAFVKDAEVMLDIEDTYI
C5 DVYLNGYRIFSVGEVVSVNFNISSTDHRDFWTVAFVKNAEVMLDIEDTYI
C6 SHCALPYKDILDPPQ-PVV--WKRYTVAN-----------------CSFD
C7 AIYINGYRLISLPVIESIVFNVTSKVGSDFWTVAFAQDVEVLLELNATNI
C8 TVYINGVNMATLPPVNSVIFNVTSTVGSDFWTVGFTDLADVMIDINATRI
C9 SIYLNGVKLFSLPTLESVIFNVSSNVGSDFWTIAYAQDAQVMVDLNATSI
C10 SIYLNGVKLFSLPVLQSVIFNVSSKVGSDFWTVAYAQDAQVMVDLNATSI
C11 DYCQPPYADLLEPPQ-PVV--WRRFMLYN-----------------CAFD
C12 SSCSVPYSVLSRPPL-PFV--WKRYAISN-----------------CKFD
C13 KACSVPYNLLETPPL-PFV--WKRHSISN-----------------CKFD
C14 TEC--DFSPMLKGVA-PQVYNFKRLVFSN-----------------CNYN
C15 NVC--PFDKVFNATRFPSVYAWERTKISD-----------------CVAD
C16 NLC--PFDKVFNATRFPSVYAWERTKISD-----------------CVAD
C17 PDC--NFTDLFRENA-PTIMQYKRQVFTR-----------------CNYN
C18 SEC--DFSAMFSSQP-PQVYNFSRLVFTN-----------------CNYN
.
C1 YTVFYNSTSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
C2 YTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
C3 YTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
C4 KQLLYCNNPVNVVKCQQLK-FVLEDGFYSYVPASEDSLPRTIVRLPRFMT
C5 KQLLYCNNPVNVVKCQQLK-FVLEDGFYSYAPQSEDSLPRTIVRLPRFMT
C6 FDVIVNNLPTYELKCYGVAPTRLAQMCYSGVTLDVMRINST------HFT
C7 VDILYCESPINKLKCQQLT-FSLDDGFYPASSAYTEYTPRSYVALPYHAT
C8 VDLLYCDTPINKLKCQQLS-FSLDDGFYTTTNVYKQAVPRTYVALPYHAT
C9 TDLLYCDTPLNRLKCQQLS-YALEDGFYPTTNIYTKDIPRSYVALPYHAT
C10 TDLLYCDTPLNRLKCQQLS-YALEDGFYPTTNIYTRDIPRSYVALPYHAT
C11 FSVVIDNLPTHQLQCYGISPKRLASMCYSSVTIDVMRINAT------HLN
C12 FQALLSHLPTFQLRCFGISPTKLATMCFGTVTLDIMLVNVT------HYN
C13 FQALLSHLPSFQLRCYGISPTKLSSMCFGTVSLDVMLVNVT------HYN
C14 LTKLLSLFAVDEFSCNGISPDAIARGCYSTLTVDYFAYPLS------MKS
C15 YTVFYNSTSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
C16 YTVFYNSTSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
C17 LTLLLSLVQVDEFVCDKITPEALATGCYSSLTVDWFAFPYA------WKS
C18 LTRLLSLFQVSEFSCHQVSPSALASGCYSSLTVDYFAYPLS------MAS
. . * : : : :
C1 QVAPGQTGVIADY-----------------------NYKLPDD---FIG-
C2 QVAPGETGVIADY-----------------------NYRLPDD---FTG-
C3 QVAPGETGVIADY-----------------------NYRLPDD---FTG-
C4 HNFINVSVVVSFYFDDGKHDTPVGSDFYECATCAPKYYHVRFTDYWLDG-
C5 HQHINISVVVSFYFDDGQADTPVGSDFYACATCAPKYYKMVFADVDWTGI
C6 NMLGNVPDVFSMY-----------------------NYVLPTD---FYG-
C7 HTEVVLGVHLSLY-----------------------TKHSATL---NGG-
C8 HSAINITAEVSVN-----------------------SNDDRFL---INGL
C9 HAVLNITAYIGD------------------------KKDDRIQ---INGF
C10 HMVLNITAYIGD------------------------KKDDRIQ---INGF
C11 NLLNRVPDSFSLY-----------------------NYAVPDN---FYG-
C12 NLLNDVPDDFSLY-----------------------NYQLPRN---FYG-
C13 NLLNDVPDDFSLY-----------------------NYQLPRN---FYG-
C14 YIRPGSAGNIPLY-----------------------NYKQSFA---NPT-
C15 QVAPGQTGVIADY-----------------------NYKLPDD---FIG-
C16 QVAPGQTGVIADY-----------------------NYKLPDD---FTG-
C17 YLAIGSADRIVRF-----------------------NYNQDYS---NPS-
C18 YLRQGSTGPIAQF-----------------------NYKQDFT---NPT-
.
C1 ----------CVIAWNTAKQ------DVGSYFYRSHRSSKLK-----PFE
C2 ----------CVIAWNTANQ------DVGSYFYRSHRSTKLK-----PFE
C3 ----------CVIAWNTANQ------DVGSYFYRSHRSTKLK-----PFE
C4 ----SNHTNVCVNTASFTTRLFTDYFGT-SGAVRIEIEPGTC-----PFG
C5 HGDILNVTGVCVNAASFTTKFRSSYLGADGVYVG--LEAGSC-----PFS
C6 ----------CVHAYYINST-NKRYTVAYQRGYSKVITPGGR-----QPY
C7 ------NDTICVNTTQFTTVLNAS---VYTG-ARGDVVNVNC-----PFT
C8 ------NGTFCVNTTQFTV--ITHFTQYTG--MRVAIENLDC-----PFT
C9 ------NDSFCVNTTQFTTN----FVQTDSGIIKAELKNGDC-----PFT
C10 ------NDSFCVNTTQFTTN----FVQTDSGIIKAELKNGDC-----PFT
C11 ----------CLHAFYLNST-T-----AYAVANRFPIKPGGR-----QSN
C12 ----------CLHSYYLPND-T-----AFSYTVASRIRYPSW-----VHS
C13 ----------CLHSYYLPNS-T-----TFNYIVASRSQSPSW-----VYN
C14 ----------CRVMASVPANVTITKPEAYGYISKCSRLTGDYQHIETPLY
C15 ----------CVIAWNTAKQ------DVGSYFYRSHRSSKLK-----PFE
C16 ----------CVIAWNTAKQ------DVGSYFYRSHRSSKLK-----PFE
C17 ----------CRIHSKVNSSVGISYSGLYSYITNCNYGGFNKDDVVKPGG
C18 ----------CRILAAVPSNVTIPLPQSYMWLTQCYTNSPSN-----SHY
*
C1 RDLSSEENGVLTLST----YDFNQNVPL---------E-YQATRVV----
C2 RDLSSDENGVRTLST----YDFNPYVPL---------D-YQATRVV----
C3 RDLSSDENGVRTLST----YDFNPYVPL---------D-YQATRVV----
C4 FD---TLNNYLAFGS----LCFSTV-P----------NGGCTMNIVTQGP
C5 FD---TLNNYLTFGS----LCFSTV-P----------NGGCTMNVVSKGP
C6 ND---YVRTLLNTPNE---IC------T---------R-ANCFGLV----
C7 WA---SLNDYLSFGT----ICFSFE-PL---------PGGCTMSIN-VVN
C8 LD---SLNNFLSFGS----ICFSTY-AV---------GGGCRMRLD-KVL
C9 FD---SINNYLTFDS----ICFSIE-PI---------GGGCTMNIV-RTW
C10 FD---SINNYLTFDS----ICFSIE-PI---------GGGCTMNIV-RTW
C11 RD---YIATVLNAAH----YT------T---------F-SYIFGLA----
C12 ITPGGRQPVGPFLDS----LQSSSK-PC---------T-GSCLGLA----
C13 ISPGGRQPPSSFLNT----LPGSAK-PC---------Q-GSCLGLA----
C14 INPG-EYSICRDFAP----WGFSEDGQVFKRTLTQFEGGGLLVGVGTRVP
C15 RDLSSEENGVLTLST----YDFNQNVPL---------E-YQATRVV----
C16 RDLSSEENGVRTLST----YDFNQYVPL---------E-YQATRVV----
C17 RASQPCVTGALNSPTNGQVWSFNFGGVP-----------YRTSRLTYTDH
C18 VEAG-SYTPCLGLAS----RGFNTFNSM---------HYDPATGLTATGS
:
C1 -------------VLSFELLNAPATVC---------GPKLSTPLVK--NQ
C2 -------------VLSFELLNAPATVC---------GPKLSTELVK--NQ
C3 -------------VLSFELLNAPATVC---------GPKLSTELVK--NQ
C4 YGQ----PHTFA-VLYVSYTDGDNIIGVPPSNIPAYGVADMSQVYL--DT
C5 YGE----PHTFA-VLYVSYTDGDNVIGVPPYNIPPYGVSDMSIVYF--DV
C6 -------------VISLNPASGSHLVC---------PTNNDTDVVE--NQ
C7 LGY----YTPFA-TLYVGYTRGHGITG---VSQKVGGIFDPSFITL--DT
C8 IST----PTPWR-ILNIVYTDGDRTTG---VTKASGGIFDPSELYV--GV
C9 FGQ----SVPWR-TLYVSYTKGSRITG---VKTPNTGVFDPSTFVE--DV
C10 FGQ----SVPWR-TLYVSYTKGSRITG---VKTPNTGVFDPSTFVE--DV
C11 -------------VITLKPASGNKLVC---------PIANDTDIIT--ER
C12 -------------VISLSIASANKLVC---------PVGNDTDIVP--DT
C13 -------------VISLSVASANKLVC---------PVGNDTDIVT--GN
C14 MTA----NLEMGFVISVQYGTDTNSVC------PMLDLGESSTITNRLGK
C15 -------------VLSFELLNAPATVC---------GPKLSTPLVK--NQ
C16 -------------VLSFELLNAPATVC---------GPKLSTSLVK--NQ
C17 LKN----PLDMVYVITVKYEPGAETVC-----PKQVRPDYSTNITGLLGS
C18 YQYISEEALEMAFIISVQYGTDSNSVC------PLQAVHNDTKVDDKLGR
: . : .
C1 CVNFNFNGLKGTGVLTD-SSKTFQSFQQFGRDASDFTDSVRDPQTLQILD
C2 CVNFNFNGLKGTGVLSS-SSKRFQSFQQFGRDASDFTDSVRDPQTLEILD
C3 CVNFNFNGLKGTGVLSS-SSKRFQSFQQFGRDASDFTDSVRDPQTLEILD
C4 CTTYTIYGMTGRGIITR-SNNTFITG-LYYTSNAGNLLAYKNSTTGIVYN
C5 CTTYTIYGMTGRGIITP-SNNTFITG-LYYTSLAGDLLAYKNSTNGIVYN
C6 CVKYNFYGYSGNGVLTK-SNLTIPDNKLFVASNTGSIIAVK--AQDTVYS
C7 CTEYTVYGITGKGVITS-LNKTIVAG-LYYTSTSGQLLGFKNSTTGEVFA
C8 CTDYTIYGISGRGIINQ-LNTTIIAG-LYYTSPAGQLLGFKNATTGDIYG
C9 CTDYTIYGMSGRGVISR-SNASYIAG-LYYTAISGQLLGFKNATTGETFV
C10 CTDYTIYGMSGRGVISR-SNASYIAG-LYYTAISGQLLGFKNATTGETFV
C11 CVQYSLYGYTGTGVLSKNTSLTVPNGKVFTASSTGAIIGVF--INGTMYS
C12 CVNYNIYGYQGTGVISR-SNYTLPSSKVFSLSSSGELTVFA--VGSSFYQ
C13 CVNYNIYGYQGTGVITT-SNYTLPSTKVFSLSASGELTVFS--VGSSFYQ
C14 CVDYSLYGVTGRGVFQN-CSAVGVKQQRFVYDSFDNLVGYY-SDDGNYYC
C15 CVNFNFNGLKGTGVLTD-SSKTFQSFQQFGRDASDFTDSVRDPQTLQILD
C16 CVNFNFNGFKGTGVLTD-SSKTFQSFQQFGRDASDFTDSVRDPQTLRILD
C17 CISYDIYGITGTGVFQL-CNATGIPQQKFVYDKFDNIIGFH-SDDGNYYC
C18 CIEYSLYGVTGRGVFQN-CTPVGLKQQRFVYDGFDNLVGYH-SDNGNYYC
* : . * * *:: . : .
C1 ISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTIHADHLTHSWRVY
C2 ITPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVY
C3 ITPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVY
C4 IYPCQLAGQVAVI--SDN------IVGMASSTPNVSLDFNVTVVADSFYY
C5 VYPCQLSGQVAVI--SDN------IVGMASSTPNVSLDFNVTVVADSFYY
C6 ISPCVSVPVSVGY--DPNYEQ-ALLFNGLECNQRAVAVSIPASAY-WLRT
C7 VRPCDLASQVAVY--QND------IIGAMTASRNSSFGFANVSELSNFYY
C8 VRPCALSSQAAVY--QNE------IIGVMTASANESFGFQNVTETPKFFY
C9 VVPCDLSSQAAVI--GDK------VVGVMTSITNSSFEFVKSIETPNFYY
C10 VVPCDLSSQAAVI--GDK------VVGVMTSITNSSFEFVKSIETPNFYY
C11 ITPCVTVPVSVGY--HANFER-VLLFNGLSCSQRSRAVSRPASTL-WNFS
C12 LSPCAFAPISAAF--YKGYTT-SLLFNNLPCSNRHRAVVEPVSAY-WRRS
C13 LSPCAFAPISAAF--YKGYTT-SLLFNNLPCSGRSRAVVEPVSDY-WRAS
C14 VRPCVSVPVSVIY--DKDTNLHATLFGSVACEHVTTMMSQFSRLTQSNLR
C15 ISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTIHADHLTHSWRVY
C16 ISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTLHADQLAPSWRVY
C17 VAPCVSVPVSVIY--DDNTNQYATLFGSVACQHISTMAAQFSRETRASLV
C18 VRPCVSVPVSVIY--DKATNNHATLFGSVACEHVDTMMSQFSRMTQSRLR
: ** . : .
C1 TTGPHV---FQTQAGCLIGAEHVN--VSYQCDIPI----GAGICASYHTA
C2 STGVNV---FQTQAGCLIGAEHVN--ASYECDIPI----GAGICASYHTA
C3 STGVNV---FQTQAGCLIGAEHVN--ASYECDIPI----GAGICASYHTA
C4 LSNSAE-----------------------PCDQPVLTYAGIGICADGSIT
C5 LSNSAE-----------------------PCDQPVLTYAGIGICADGSIT
C6 VSDNQTAGVFDTPSGCVYNVINRTDITVNACDMPI----GNSLCLINATS
C7 HSNGHL-----------------------GCEEPVLIYGKMGICSDGSLT
C8 HSNGNS-----------------------TCTEPVLTYGSVGVCPDGTLI
C9 LTNATA-----------------------NCTSPVITYGKLGVCEDGSIA
C10 LTNATA-----------------------NCTSPVITYGKLGVCEDGSIA
C11 VSDESA---IDTLSGCVVNAILHNDTTVSTCSMPL----GNSLCLINDTT
C12 VADNNT---FDTTAGCIFNAYNLTSIVVNQCDLPI----GDSYCLQPSLI
C13 VVNNST---FDTSAGCIFNAINSTSIVVNQCDLPI----GDSYCLQPSTI
C14 RRDSNA--PLQTAVGCVVGLSNNSL-VVSDCRLPL----GQSLCAVPPVT
C15 TTGPYV---FQTQAGCLIGAEHVN--ASYQCDIPI----GAGICASYHTA
C16 TTGPYV---FQTQAGCLIGAEHVN--ASYQCDIPI----GAGICASYHTA
C17 SRNMQN--LLQTSVGCVMGFHETND-TVEDCNLSL----GQSLCAIPPNT
C18 VRNIDDAGPMQTSVGCVVGLVNTSL-IVDNCQLPL----GQSLCAVPATT
. * .: . *
C1 SLLRSTGQ------KSIVAYTMSLGAENSVAYANNS-IAIPTNFSISVTT
C2 STLRSVGQ------KSIVAYTMSLGAENSIAYANNS-IAIPTNFSISVTT
C3 STLRSVGQ------KSIVAYTMSLGAENSIAYANNS-IAIPTNFSISVTT
C4 NNTARRAA-----------------SDPISPVISGN-ISVPTNFTFSVQV
C5 NNTARRAA-----------------SDPISPVISGN-ISVPTNFTFSVQV
C6 TQARATSGDDTKSYLSLVNYDPTY-TSLTKVLTPVYWVSIPTNFTLAAGT
C7 EVNNKDAE-----------------QQPVSPIATAN-VTVPVNFTVSVQV
C8 MVQTRSGN-----------------VNPVSPIVSGN-ITIPLNFTVSVQV
C9 EVKVNTHV-----------------QTPVSPISTGN-ITVPSNFTVSVQV
C10 EVKVNTHV-----------------QTPVSPISTGN-ITVPSNFTVSVQV
C11 VAIAHAVG---LPKLYLVNYDPLYDNNSATPITPVYWVKIPTNFTLTATD
C12 KGFEATLS--------LVTYNPL--ADSLTPITPVYQVSVPTNFTLVAST
C13 SRQGSTLL--------LVTYDPL--SDTLTPITPVYEISVPTNFTLVAST
C14 SFRRRSAS---EFQLAVLNYTSPIVVTPIN--SSGFTAAIPTNFSFSVTQ
C15 SLLRSTGQ------KSIVAYTMSLGAENSVAYANNS-IAIPTNFSISVTT
C16 SLLWSTGQ------KSIVAYTMSLGAENSVAYANNS-IAIPTNFSISVTT
C17 NLRVGRST----FGLGSLAYNSPLRVDALN--SSEFKVSLPLNFTFGVTQ
C18 IRAATGTT--SSLQLATINFTEPHMLTPIN--SSRFIVEIPTNFSFGVTQ
:* **:. .
C1 EVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQ
C2 EVMPVSMAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGVALEQ
C3 EVMPVSMAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGVALEQ
C4 EYIQLMLKPVTVDCSVYVCNGNPRCLQLLAQYASACRTIEQALQ-LSARL
C5 EYIQLMLKPVTVDCSVYVCNGNPRCLQLLAQYASACRTIEQALQ-LSARL
C6 EYIQTTSPKINIDCAKYLCGDSDKCLTVLLQYGTFCDDVNKALAEVSSVI
C7 EYLQMYMQPVSVDCNTYVCSGNVHCLRLLTQYASACRNIESSLQ-LSARL
C8 EYLQMYLQPVSVDCNMYVCGGNPHCLRLMSQYASACRTIEESLQ-LGARL
C9 EYLQMYMRPVSVDCAMYVCNGNPHCLRLLTQYASACRTIEDALQ-LSARL
C10 EYLQMYMRPVSVDCAMYVCNGNPHCLRLLTQYASACRTIEDALQ-LSARL
C11 EFIQTNAPKVTIDCARYLCGDSSRCLNILLHYGTFCDDINKALAKVNTIL
C12 EYIQTYASKISIDCAKYLCGDSSQCRTVLLQYGTFCNDVNVALTRVFTLL
C13 EYIQTYASKISIDCAKYLCGDSSQCRTVLLQYGTFCNDVNVALTRVFTLL
C14 EYVETSIQKVTVDCKQYVCNGFSRCEKLLVEYGQFCSKINQALHGANLRQ
C15 EVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQ
C16 EVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQ
C17 EYIETSIQKITVDCKQYVCNGFAKCEKLLEQYGQFCSKINQALHGANLRQ
C18 EFIQTTIQKVTVDCKQYVCNGFEKCEQLLREYGQFCAKINQALHGANLRQ
* : .:** *:*.. .* :: .*. * :: :*
C1 DKNTQEVFAQVKQMYKTP-TIRDFGG-FNFSQIL----PDPLKPTKRSFI
C2 DKNTQEVFAQVKQMYKTP-AIKDFGG-FNFSQIL----PDPSKPTKRSFI
C3 DKNTQEVFAQVKQMYKTP-AIKDFGG-FNFSQIL----PDPSKPTKRSFI
C4 ESVEVNSMISISQQALDLGVIDNFNHDFNLTNVL------PASVGGRSAV
C5 ESVEVNSMISISQQALDLGVIDNFNHDFNLTNVL------PANVGGRSAV
C6 DSTMVSLVSELTADVVRS-ENTAFDTTYNFTSLMGCLGSSCNTRNYRSAL
C7 ESLEVNSAITVSERAASLANITNFEN-YNLSVLL------P-NLNGRSAM
C8 ESTEVANTISVSSQAVQLANITNFDS-YNVSVLL------P-RANGRSFI
C9 ESIEVNSVISVSEDALELANISNFDH-YNMSALL------P-KKNGRSFI
C10 ESIEVNSVISVSEDALELANISNFDH-YNMSALL------P-KKNGRSFI
C11 DSALLSLSKELSINTRDEIQSFAFGGDYNFTGLMGCLGPNCGATTYRSAL
C12 DNSLVDTFSSLKSTAPVQ---LAYTGDFNFTSLVGCIGTDCDSKSHRSAL
C13 DNSLVDTFSSLKSTAPAQ---LAYTGDFNFTSLVGCVGTDCDSKSYRSAL
C14 DESVYSLYSNIKTTSTQT-LEYGLNGDFNLT-LLQVPQIGGSSSGYRSAI
C15 DKNTQEVFAQVKQMYKTP-TIRDFGG-FNFSQIL----PDPLKPTKRSFI
C16 DKNTQEVFAQVKQMYKTP-TIRDFGG-FNFSQIL----PDPLKPTKRSFI
C17 DDFVRNLFESVKTPQTVP-LTTGFGGEFNLT-LLEPLSVSTGSSNARSAL
C18 DESVSNLFSNIKTQATQP-LDAGLTGDFNLT-LLQVPKVVTSQYSYRSAI
:. :. :*.: :: ** :
C1 EDLLYNKVTLADAGFMKQ-YADCL---GGINARDLICAQKFNGLTVLPPL
C2 EDLLFNKVTLADAGFMKQ-YGECL---GDISARDLICAQKFNGLTVLPPL
C3 EDLLFNKVTLADAGFMKQ-YGECL---GDISARDLICAQKFNGLTVLPPL
C4 EDLLFDKVVTSGLGTVDADYKECAS-RTANTVAEVGCVQYYNGIMVLPGV
C5 EDLLFDKVVTSGLGTVDADYKECAS-RTANWVAEVGCVQYYNGIMVLPGV
C6 SDLLYNKVKVADPGFMSS-YQKCIDSQWGGSVRDLICTQNFNGISVLPPI
C7 EDLLFNKVVTNGLGTVDQDYKQCIKDKGVGDVADVACAQYYNGVMVLPGV
C8 EDLLFDKVVTSGLGTVDQDYKQCVNEWGIGEVADLSCAQYYNGIMVLPGV
C9 EDLLFNKVVTNGLGTVDQDYKKCMKDKGFGEASDIACVQYYNGIMVLPGV
C10 EDLLFNKVVTNGLGTVDQDYKKCMKDKGFGEASDIACVQYYNGIMVLPGV
C11 SDLLYDKVKITDPGFMQS-YQKCIDSQWGGSVRDLLCTQTYNGIAVLPPI
C12 SDLLFSKVSVADPGFMQS-YQQCLDAQWGGNIRDLLCTQTFNGISVLPPI
C13 SDLLFNKVSVADPGFMQS-YQKCLDSQWGGNIRDLLCTQTFNGISVLPPI
C14 EDLLFDKVTIADPGYMQG-YDDCMK-QGPQSARDLICAQYVSGYKVLPPL
C15 EDLLYNKVTLADAGFMKQ-YADCL---GGINARDLICAQKFNGLTVLPPL
C16 EDLLYNKVTLADAGFMKQ-YADCL---GGINARDLICAQKFNGLTVLPPL
C17 EELLFDKVTIADPGYMQG-YDDCMQ-QGPASARDLICAQYVAGYKVLPPL
C18 EDLLFNKVTIADPGYMQG-YDECMK-QGPPSARDLICAQFVAGYKVLPPL
.:**:.** . * :. * .* :: *.* * *** :
C1 LTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
C2 LTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
C3 LTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
C4 VDQSLLAQYSAALTGAMVLGGITAAAA----VPFSIAVQSRLNYLALQTD
C5 VDQSLLAQYSAALTGAMVLGGITAAAA----VPFSIAVQSRLNYLALQTD
C6 VSPAMQSLYTSLLVGAVASAGYTFGITSVGVIPFATQLQFRLNGLGVTTQ
C7 VDDTKMSLYTASLVGGMVLAGFTAGAA----IPFSLAVQARLNYVALQTD
C8 VDANMMTLYTASLTGAMVFGGITASAS----IPFSLAVQSRLNYVALQTD
C9 VDDSKMALYTAALTGGMLLAAFTAGAS----IPFSLAVQSRLNYVALQTD
C10 VDDSKMALYTAALTGGMLLAAFTAGAS----IPFSLAVQSRLNYVALQTD
C11 VSPAMQALYTSLLVGAVASSGYTFGITSAGVIPFATQLQFRLNGIGVTTQ
C12 VSPSMQALYTTALVGGIAASGFTFGVSSAAVIPFATQLQFRLNGLGVTTN
C13 VSPSMQALYTTALVGGIAASGFTFGVSSAAVIPFATQLQFRLNGLGVTTN
C14 YDPNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSMFYRLNGVGITQQ
C15 LTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
C16 LTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
C17 MDVNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSIFYRLNGVGITQQ
C18 YDPNMESMYTTSLTGAILGAAWTAGASSFAAIPFAQSVFYRMNGIGITQQ
: *:: * .. .. * . :**: : *:* :.: :
C1 VLYENQKQIANQFNKAITQIQESLT--------------TTATALGKLQD
C2 VLYENQKQIANQFNKAISQIQESLT--------------TTSTALGKLQD
C3 VLYENQKQIANQFNKAISQIQESLT--------------TTSTALGKLQD
C4 VLQRNQQQLANSFNAAMGNITEAFGRVNDAIEQTSHAISTVAQALDKVQN
C5 VLQRNQQQLANSFNAAMGNITDAFGRVNDAIEQTSHAVSTVAQALNKVQT
C6 VLVQNQQLIANSFNNALTNIQKGFD--------------ATNLALSQMQS
C7 VLQRNQQILAESFNSALSNITEAFTEVNEAIKNTADAINTVATALGKVQS
C8 VLNRNQEILAQSFNSALGNITAAFSEVNHAFQETSDAINTVAQALGKVQT
C9 VLQKNQQILATSFNNAMSNITVAFTEVNQAIKETSDAINTVAKALGKVQS
C10 VLQKNQQILATSFNNAMSNITVAFTEVNQAIKETSDAINTVAKALGKVQS
C11 VLVENQKLIASSFNNALVNIQKGFT--------------ETSIALSKMQD
C12 VLMENQQLIANAFNKALVSIQEGFT--------------ATNQALNKIQT
C13 VLMENQQLIANAFNKALVSIQEGFT--------------ATNQALNKIQT
C14 VLSENQKLIANKFNQALGAMQTGFT--------------TSNQAFSKVQD
C15 VLYENQKQIANQFNKAITQIQESLT--------------TTATALGKLQD
C16 VLYENQKQIANQFNKAITQIQESLT--------------TTSTALGKLQD
C17 VLSENQKIIANKFNQALGAMQTGFT--------------TTNEAFQKVQD
C18 VLSENQKQIANKFNQALGAMQTGFT--------------TTNLAFAKVQE
** .**: :* ** *: : .: *: ::*
C1 VVNQNAQALNTLVKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGR
C2 VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGR
C3 VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGR
C4 VVNDQGMALSQLTKQLASNFQAISSSIEDLYNRLDRVEADQQVDRLITGR
C5 VVNDQGMALSQLTKQLASNFQAISSSIEDLYNRLDRVEADQQVDRLITGR
C6 VINQHAQQLQTLVNQLGNSFGAISSSINEIFSRLDGLEANAQVDRIINGR
C7 VVNQQGEALAQLTKQLSSNFQAISSSIEDIYLRLDKLAADAQVDRLISGR
C8 VVNEQGQALSQLTRQLASNFQAISNSIEDIYNRLDGLTADAQVDRLITGR
C9 VVNEQGQALSQLTRQLASNFQAISSSIEDIYNRLDSLAADAQVDRLITGR
C10 VVNEQGQALSQLTRQLASNFQAISSSIEDIYNRLDSLAADAQVDRLITGR
C11 VINQHAAQLQTLVTQLGNSFGAISSSINEIFSRLEGLAANAEVDRLINGR
C12 VVNNNALQLQVLVQQLGNTFGAISASVNEIFSRLDLLEANAEVDRLISGR
C13 VVNNNALQLQVLVQQLGNTFGAISASVNEIFSRLDLLEANAEVDRLISGR
C14 AVNANAQALSKLASELSNTFGAISSSISDILARLDTVEQDAQIDRLINGR
C15 VVNQNAQALNTLVKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGR
C16 VVNQNAQALNTLVKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGR
C17 AVNTNAQALAKLASELSNTFGAISSSIGDIIQRLDVLEQEVQIDRLINGR
C18 AVNANAQALSKLASELSNTFGAISSSISDILKRLDAVEQEAQIDRLINGR
.:* :. * *. :*...* *** : :: **: : : ::**:*.**
C1 LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM
C2 LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGRGYHLM
C3 LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGRGYHLM
C4 LAALNAFVAQQLTKYTDVRASRQLAQEKINECVKSQSFRYGFCGNGTHVF
C5 LAALNAFVAQQLTKYTDVRASRQLAQEKINECVKSQSFRYGFCGNGTHVF
C6 TVVLNTYVTQLLLKASEVRSQAALARQKISECVKAQSLRNDFCGNGTHVF
C7 LAGLNAFVTQTLTKYTEVRASRQLALQKVNECVKSQSSRYGFCGNGTHLF
C8 IGALNAFVAQTLTKYTEVRASRQLAIQKINECVKSQSARFGFCGNGTHLF
C9 LGALNAFVTQTLTRYTDARASRQLAIQKINECVKSQSMRYGFCGNGTHLF
C10 LGALNAFVTQTLTRYTDARASRQLAIQKINECVKSQSMRYGFCGNGTHLF
C11 MMVLNTYVTQLLLQASEAKAQNALAVQKISECVKAQSLRNDFCGNGTHVL
C12 MVVLNTYVTQLLIQASELRSQAELAKQKMSECVKSQSLRNDFCGNGTHVL
C13 MVVLNTYVTQLLIQASELRSQAELAKQKMSECVKAQSTRNDFCGNGTHVF
C14 LTSLNAFVSQQLVRSETAARSAQLASDKVNECVKSQSKRNGFCGSGTHIV
C15 LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM
C16 LQSLQTYVTQQLIRAAEIRTSANLAATKMSECVLGQSKRVDFCGKGYHLM
C17 LTTLNAFVAQQLVRSESAARSAQLAKDKVNECVKSQSTRSGFCGQGTHIV
C18 LTSLNAFVAQQLVRSETAARSSQLAVDKVNECVKSQSKRNGFCGSGNHIV
*:::*:* * : . ** *:.*** .** * .*** * *:.
C1 SFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHEGK---AYFPREGVFVS
C2 SFPQAAPHGVVFLHVTYVPSQEKNFTTAPAICHEGK---AYFPREGVFVS
C3 SFPQAAPHGVVFLHVTYVPSQEKNFTTAPAICHEGK---AYFPREGVFVS
C4 SVVNAAPDGMMFFHSVLLPTAYMEVAAFSGLCVEGK-GFVLREVGNVLFE
C5 SVVNAAPDGMMFFHSVLLPTAYMEVAAFSGLCVEGK-GFVLREVGNVLFE
C6 SVPQLAPNGVMFIHYTYQPTAYALVQTAAGLCYNGT---GYAPLSGMFVL
C7 SVVNAAPNGIMFFHTVLIPSSYTTVQAWAGVCVNGDVGLILRDVRNTLFY
C8 SIANAAPNGIMLFHTVLLPSEYTTVQAWAGICIDNNVGLILRDFKTTLFF
C9 SIANAAPNGVMLFHTVLIPTEFVTVEAWSGVCVDGTHGLILRDVRTTLFQ
C10 SIANAAPNGVMLFHTVLIPTEFVTVEAWSGVCVDGTHGLILRDVRTTLFQ
C11 SIPQLAPNGVLFIHYAYTPTDYALVQTSAGLCYNGT---GYAPLRGMFVL
C12 SIPQLAPNGMLFIHYSYQPTKYAQVYTTAGLCFNGT---GFVPRDGLFVR
C13 TIPQLAPNGMLFIHYSYQPTNYVQVYTTAGLCFNGT---GFVPRDGLFVR
C14 SFVANAPNGFYFFHVGYVPTNFTNVTAAYGLCNNNNPLLCIAPIDGYFIT
C15 SFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHEGK---AYFPREGVFVS
C16 SFPQSAPHGVVFLHVTYVPSQERNFTTAPAICHEGK---AYFPREGVFVS
C17 SFVINAPNGLYFMHVGYHPSQHIEVVAAYGLCDAANPTNCIAPVNGYFIK
C18 SFVSNAPNGLYFFHVGYVPTAHINATAAYGLCNTELPPRCIAPIDGYFVT
:. **.*. ::* *: : .:* :.
C1 NGS-------SWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP
C2 NGT-------SWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDP
C3 NGT-------SWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDP
C4 KDG-------RYFITARRMFEPRIPQTADFVQISGCDVVYLNVTRDELPT
C5 KDG-------SYLITARKMFEPRVPQTADFVQISGCDVVYLNVTRDELPT
C6 PND-TN----LWHYTKMNFYNPVNITFENTQVLDSCAVNYSYVNYSVIEP
C7 LDS-------KYYITTRDMYQPRTPVQSDFVRISNCSVSYVNITSEQLGD
C8 SD--------KYYVTPRDMFEPRTPVQADFVRIANCSVNYLNISSSELGT
C9 QGS-------TYYVTTRDMFEPRTPVAADFVRIANCSVTYVNITADSLGE
C10 QGS-------TYYVTTRDMFEPRTPVAADFVRIANCSVTYVNITADSLGE
C11 PNN-TN----MWHFTSMQFYNPVNISYSNTQILTSCSINYTSVNYSVLQP
C12 ENNESQ----VWYFTKASFYNPVNLSYENTHLLDTCGVNYTTVNNSVLNP
C13 ENNASQ----LWYFTKASFYNPVNLSYENTRLLDTCGVNYTTVNNTVLNP
C14 NQTTTYSIDTEWYYTGSSFFKPEPITQVNSRYVSS-DVKFEKLENNLPPP
C15 NGS-------SWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP
C16 NGS-------SWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP
C17 NQT-TRGVD-DWSYTGSSFYAPEPITTLNTRYVAP-QVTFQNISTNLPPP
C18 NSSATRDADPEWYYTGSAFYNPEPITLANTRYVSK-DTKYQELNNKLPPP
: * :: * : :
C1 LQPEL--DSFKQELDKYFKNHTSPDVDLGDISGINASVVDIQKEID----
C2 LQPEL--DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEID----
C3 LQPEL--DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEID----
C4 IIPDY--VDVNGTVEDILSKLPNRTSPELDLDIFNATYLNLTSEIADLTA
C5 IIPDY--VDVNGTVEDILSKLPNRTSPEFNLDIFNATYLNLTSEIADLTA
C6 TPPSS--YNFTEEFNKWYKNHSSYFNNTFNPGDFNFTGVNISEQLA----
C7 IIPDY--LDVNKTLNDLQQSRPNYTVPDLGLDQYNTTILNLTSEIAMLQN
C8 IIPDY--IDVNKTLEELEQQRPNYTLPELDIDRFNNTYLNLSAEIAELQR
C9 IIPDY--IDVNKTLEEL--GRPNFTLPDFNLDQFNNTYLNLSAEIALLNA
C10 IIPDY--IDVNKTLEEL--GRPNFTLPDFNLDQFNNTYLNLSAEIALLNA
C11 SAPSD--YDFQKEFDKFYKNLSTSFNNTFNPNDFNFSMVDVTAQIS----
C12 IEPPN--YNFQEEFDKYFKNQSSQFNITFDSSQFNVSIVNLNEQMA----
C13 IEPPN--YDFQEEFDKYFKNQSSHFNITFDSSQFNVSIVNLNEQMA----
C14 LLENSTDVDFKDELEEFFKNVTSHGPNFAEISKINTTLLDLSDEMA----
C15 LQPEL--DSFKQELDKYFKNHTSPDVDLGDISGINASVVDIQKEID----
C16 LQPEL--DSFKQELDKYFKNHTSPDVDLGDISGINASVVDIQKEID----
C17 LLGNSTGTDFKDELDEFFKNVSTSIPNFGALTQINTTLLDLSDEML----
C18 LLSNQTDESFRDELEEFFKNVSSQGPNFQEISKINATLLDLSDEMK----
.. .:. .. * : ::: ::
C1 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
C2 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
C3 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
C4 RSESLKNTTLELKELIANINATLVDLEWLNRVETYIKWPWWVWLIIVLVL
C5 RSESLKNTTLELKELIANINATLVDLEWLNRVETYIKWPWWVWLIIVLVL
C6 ----------TLTDVVNQLNKSFIDLKQMNVYEQTIKWPWYVWLAMIAGL
C7 KSDSLIESTVKLHKLIEQLNQTYVDLEWLNRLESYVKWPWWVWLAILLAL
C8 KSESLQNSTIQLQELIERINSSYVDLELLKRIETYVKWPWYVWLAIILVM
C9 KSESLYNTTQRLEKSIENINNSYIDLELLNRLESYVKWPWYVWLAIFLAL
C10 KSESLYNTTQRLEKLIENINNSYIDLELLNRLESYVKWPWYVWLAIFLAL
C11 ----------SLHQVVDQLNQSFIDLKKLNVYEKTIKWPWYIWLAMIAGI
C12 ----------ALDSVVKSLNESFIDLKKLGVYTQQPNTPWYAWLGMIAGL
C13 ----------ALDSVVKSLNESFIDLKKLGVYTQTIKWPWYAWLGMIAGL
C14 ----------ILQEVVKQLNDSYIDLKELGNYTYYNKWPWYIWLGFIAGL
C15 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
C16 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
C17 ----------ALQQVVKALNESYIDLKELGNYTYYNKWPWYIWLGFIAGL
C18 ----------VLNEVVKQLNESYIDLKELGNYTYYQKWPWYVWLGFIAGL
* . :* : :**: : : **: ** :. :
C1 VGLFMAIILLCYFTSCCSCCKGMC-SCGSCC-RFDE-DDSEPVLKGVKLH
C2 IAIVMATILLCCMTSCCSCLKGAC-SCGSCC-KFDE-DDSEPVLKGVKLH
C3 IAIVMATILLCCMTSCCSCLKGAC-SCGSCC-KFDE-DDSEPVLKGVKLH
C4 ILFTCLMLFCCCSTGCCGIFSCLASSCGACCDIRGTKLQRYEAIE--KVH
C5 ILFTCLMLFCCCSTGCCGIFSCLASSCGACCDIRGTKLQRYEAFE--KVH
C6 VGLVLAVIMLLCMTNCCSCFKGLC-SCRHC--SYDEIEDVYPAVRVHNKR
C7 IFTSFILLYCCCSTGCCGCTSCLA----DCRGQRLQ------RYEVEKVH
C8 SLFSFLMLYCCCMTGCCGCCSCLTSCCFDCRGKRLQ------QYEVEKVH
C9 ILFSFLMLYCCMATGCCGCCSCLSNSCFDCGGRRLQ------RYEVEKVH
C10 ILFSFLMLYCCMATGCCGCCSCLSNSCFDCGGRRLQ------RYEVEKVH
C11 VGLVLAVIMLMCMTNCCSCFKGMC-DCRRCCGSYDSYDDVYPAVRVNKKR
C12 VGLALAVFMLCCMTNCCSGFRGIC-SCKQC--QYDDYADVYPAVRVSGKR
C13 VGLALAVFMLCCMTNCCSGFRGIC-SCRQC--QYDDYADVYPAVRVSGKR
C14 VALLLCVFFLLCCTGCGTSCLGKM-KCRNCCDSYED-------FDVEKIH
C15 VGLFMAIILLCYFTSCCSCCKGMC-SCGSCC-RFDE-DDSEPVLKGVKLH
C16 VGLFMAIILLCYFTSCCSCCKGMC-SCGSCC-RFDE-DDSEPVLKGVKLH
C17 LALALCVFFILCCTGCGTSCLGKL-KCNRCCDKYEEYD-----LEPHKIH
C18 VALALCVFFLLCCTGCGTNCMGKF-KCNRCCDSYDDYE-----VEPHKIH
: *.* * :
C1 YT
C2 YT
C3 YT
C4 VQ
C5 VQ
C6 TE
C7 IQ
C8 IQ
C9 IQ
C10 IQ
C11 TV
C12 TV
C13 TV
C14 VH
C15 YT
C16 YT
C17 IH
C18 VH
-- Starting log on Thu Oct 27 00:04:30 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=1.12 sec, SCORE=826, Nseq=18, Len=1552
C1 ---MFIVFLISYTTFLIPY-------------TATTTCFSGPTTENK-LN
C2 -----MLILFVFLPFITAD-----------------TCLNFTNLAAPAYN
C3 -----MLILFVFLPFITAD-----------------TCLNFTNLAAPAYN
C4 MLRNKKFLSLFVFSVVLPCAY-----------SNTGTCSNTINRFMY-LK
C5 MLRNKKFLSLFVFSVVLPCAY-----------SNTGTCSSTINRFMY-LK
C6 ----MWAILLILPAVLA------RPSCI-KS-SVSLSSIEHNVTYQS-FV
C7 -MILSLLLLVIAVCVNNNYAWLGLQRNAIPPSNQDGECGGDPGKLPN-LN
C8 ----MLFLAVYAAELLVLITQIPAVFSYG---GERFTCSPNYASLPN-LN
C9 ----MLSLAVYFAELLVIISYLPDLVT-----GDLNGCADGHNRLPN-LN
C10 ----MLSLAIYIAEILAFLQ-LPDLTTGAP--NKDGDCGDGYNRLPN-LN
C11 ----MLLTVVLSLALIACDASATRPECFANS-NFQLYPRNHTVNITS-LS
C12 ----MVVLLFVMFSLVVAD----RPNCYLP--QYSYTISPATITNTSYFN
C13 ----MVVLLFAILSIALAD----RPLCTINTGNYVLNPIQANITYTVVNS
C14 ----MTRLMCLLMSLLIFVRGCEAQFVDMSPASNNSECLDSQVDAAAFSK
C15 ---MFIVFLISYTTFLIPY-------------TATTTCFSGPTIENK-LN
C16 ----MKILIFAFLVTLV---------------KAQEGCGVINLKTQPTLT
C17 -MTYSVSLLMCLLTFIGAN----AKIVSIPGGVGTGACPQVDMQPSYFIK
C18 ----MTHLMFLLMFLLTPI----RGDVDLGPDSTRDTCDEVVVQVSA-FQ
C1 IS-------SGSRGVY-YPDDIFR---------S-NVSVLVTGRFLRFNT
C2 IA------SSSRRGVY-YPDDIFR---------S-DFLHLVNDYFLPFGS
C3 IA------SSSRRGVY-YPDDIFR---------S-DFLHLVNDYFLPFGS
C4 LGLPESVNDAYVSGYLPVRDNWTCS------AGF-WQYYNAHAIFMSYYS
C5 LGLPESVNDAYVSGYLPVRDNWTCS------AGF-WQYYNAHAIFMSYYS
C6 LS---------KVSCL-LPDPFIA----------YSGQTLKQSIYYADTT
C7 LGLPPN-KTVFVSGYLPLHKGWVCPTHPLGGGGYGTTFNDIHAIYWSYHS
C8 LGLPPN-STVLVSGYLPRPGDWVC------YTGT-TTHDNIRGVFWSYYS
C9 LGLPPN-STVFVSGYLPRKNGWECPTINNQYGGS-TNYENVHGIFWSYHS
C10 LGLPPN-STVFVSGYLPQKTGWVCP--ENKEAGA-TSYEGVHGVFWSYYA
C11 VN---------VANLL-LPDPYIA----------YSGQTLRQNLFMADLS
C12 VN---------PISIV-VPEFSVA----------RTNLVVRQRLQVAAYD
C13 IN---------PVSLV-VPEFSIA----------RTNLVVRQRLYVA-AT
C14 LMWPYPIDPSKVDGII-YPVGRTY----------SNITLSYTGLFPLQGD
C15 IS-------SGSRGVY-YPDDIFR---------S-NVSVLVTGRFLRFNT
C16 QV------SSSRRGVY-YNDDIFR---------S-DVLHLTQDYFLPFHS
C17 HNWPEPIDMNKADGVI-YPNGRTY----------SNITLQTTNLFPRNGD
C18 KDWPQPINPLFADGII-YPTGRSY----------SNISLSYQGLFPRQGD
.
C1 TLTWYN------S---WN----------QAYSSPVLPFGHG--VYFST--
C2 NVTQFY------T---QG----------TNIDNPTLPFRDG--VYFAA--
C3 NVTQFY------T---QG----------TNIDNPTLPFRDG--VYFAA--
C4 TAMDFAIGVGSSKSYN------------TKWGLYFWQKNNGYRAVFRICK
C5 TAMDFAIGVGSSKSYN------------TKWGLYFWQKNNGYRAVFRICK
C6 NVTVYPVTPYKKD--SKA----------TMYNTTQVLVGNG--LFVHTYM
C7 TANAVELAVSSGNGSVTR----------D-WSLYVHHSNNQGYMYFKICR
C8 HGSAVAIGISNKDQTTTP----------DQWALFAHHSNNGGQFYLRICK
C9 TAQRFELGVSNKDQLVNT----------NRWALYVYQNNNEGVLKLRICK
C10 TGQDVEIGVSNFRQLNNT----------NRWALYVHQKNNDHVLHFRICK
C11 RTIIYPITPPAKDS-TGG----------YIYNTTILPVASG--LFVHTWM
C12 -FTKIPITPPHRS----------------IFNNTYFRVGDG--ILVNTHM
C13 NFTRIPITPPGRA---------------VIFNNTYFDAEDG--FFVNTHM
C14 LGTQYLYSVSHAVGHDGDPTTAYI----SNYSLLVNAFDNGFVVRIGAAA
C15 TLTWYN------S---WN----------QAYSSPVLPFGHG--VYFST--
C16 NLTQYFSLNIESD---KI----------VYFDNPILKFGDG--VYFAA--
C17 LGTQYVYSASNEKSRTSNVAFI------SNYSYYGNPFGDGIVIRIGQNS
C18 LGRQYIYSVTHAGDSTLYPPQGIGKHFISNYSAETLPFGNGFVVRIGFSA
.
C1 IDKSNVVRGW--------------IFGTTLDNTTQSA---------LLV-
C2 TEKSNIVRGW--------------IFGSTLDSTSQSA---------IIL-
C3 TEKSNIVRGW--------------IFGSTLDSTSQSA---------IIL-
C4 W-DSKIEPSFQPSNQQARECLINKEFYMGFGHAKNQIFGVSWSGNRVTLH
C5 W-DSKIEPSFKPSNQQARECLINKEFYMGFGHALNQIFGVSWSGNRVTLH
C6 YREQDSSTY--------CQEPFGVVFGTTFEQDRIAI---------IMIV
C7 W-GAVYPLNLSPNHNRG-DCLVNRKFNFRFLHGANQVLGVTWSSNYVTLY
C8 WLNGG-NLDWATESSRG-LCIVNRKFRFQFSHAAGQVIGVTWSSNVVTFY
C9 WLRGQYSLQWLHGARHG-QCAVDRAFNFRFVHAENQVLGVTWSSNYVTFY
C10 WLAGTYTPQSRPWSRYG-QCAVDKRISFTFEHQGNQVLGVTWSSNYVTFY
C11 YRQESTSRTY-------CQEPFGVAFGDTFIQDRIAI---------VIIA
C12 YHRTNIATNLG-SSFYGCQEPFGAAFGNTFVNEPITL---------VMFY
C13 YHTNNIATSPNKPNFYGCQEPFGVAFGNTFENEPITL---------VMVY
C14 NSTGTIVISPSVQTKIKKAYP-AFILGSSLTNTSAGL--PLYANYSLTII
C15 IDKSNVVRGW--------------IFGTTLDNTTQSA---------LLV-
C16 TEKSNVIRGW--------------VFGSTFDNTTQSA---------IIV-
C17 NKTGSVIVGTAQTTIKKIYPA--LMLGSSFGNFSVNNKSGAYFNHTLLIL
C18 NKTGSLVISPTTSKVIKKIYP-AFMLGTAVTSFAHGH-AGRYLNHTLVIL
: . : .
C1 ------------NNGSAITIEVC-YFQFCDNPAFIISGGAQTN-TAIYIN
C2 ------------NNSTNLIVRVC-NFELCKVPLFVVFKSNNSQLSHLFSD
C3 ------------NNSTNLIVRVC-NFELCKVPLFVVFKSNNSQLSHLFSD
C4 TLDKVVSFFVEGADAWDYASYRCANGYSCA--HQVVYTPVTLRITTVPEG
C5 TLDKVVSFFVEGADTWDYASYRCANGYSCA--HQVVYTPVTLRITTVPQG
C6 PGNLGSWPTVSKPTTIKVYIIVGSNATICAYPAFNRWGPAG---QFYADD
C7 GLNNTYRFYL--HNNWERATVRCHTKQSCA--FFPVENVTTLNITTNGEG
C8 G-SRSYRYYL--TNNWNRVDVKCVNYPTCI--INPVRNITTFNVTTNAQG
C9 GINGSYRYYI--PNDWFRVSVKCENKYVCA--IYPVYNQTTLNITTNAKG
C10 GISKSYRYFL--KNDWYRVTVKCLNKYACA--LYPVYNQTTLNITTNARG
C11 PDNLGSWNQVSYRNVTTVHLVVCSNATLCINPGFNRWGPAG---NIIASN
C12 AGNVGSWSSLVTQQQANITIVSCDNATLCANPFFLRWGPGVIR-SFTISN
C13 AGNIGSWTNTVTQTSANITIVSCDNATLCSNPLYLRWGPGGLP-GYVIKD
C14 PDGCGTVLHAFYCILQPRTQNRCPGNGGYK--AYFVYETIHNDCVPAINK
C15 ------------NNGSAITIEVC-YFQFCDNPAFIISGGAQTN-TAIYIN
C16 ------------NNSTHIIIRVC-YFNLCKDPMYTVSAGTQVS-SWVYQS
C17 PSKCGTVFQVAYCLLQPRTDSYCPGNANYV--SYALIDSPT-DCTSADES
C18 PESCGTSLTVFYCILEPRNGTRCPNHQDYT--SYVIWETPHLDCGSSVNR
C1 LRN--CTYVDTLRDLPL-SFAEVDGGFKHLREFVFKNSDGFLHIYGAYQ-
C2 SFN--CTFEYVSRAFSL-DIREQSGNFVDLREFVFRNRNGFLHIYEGYE-
C3 SFN--CTFEYVSRAFSL-DIREQSGNFVDLREFVFRNRNGFLHIYEGYE-
C4 IRS-YDLCTNCSGFPEH-VFAVLDGGEIPP-NFDFTN---WFYLTNASS-
C5 IRS-YDLCTNCSGFPEH-VFAVLDGGEIPP-NFDFTN---WFYLTNASS-
C6 AFV--NHGDSCFVNNTF-EIPLNTSRI----NLAFRFNDGNLLLYHSRW-
C7 LIESYDVCADCGGFPVH-VFPVLEHGYIPN-DFSFSN---WFMLSNTST-
C8 LFQSYTVCDDCNGFPQH-VFAVLDGGYIPS-EFGLDN---WYVLSNTST-
C9 LIKEYSVCESCNGFPAH-VFPVLEGGKIPA-DFDFTN---WFYLSNTST-
C10 LIQSYSVCDSCNGFPAH-VFPVLEGGKIPA-DFDFTN---WFYLTNSST-
C11 ALV--DHSNSCFVNNSF-NVSISTSRI----NLAFLFKDGDLLIYHSNW-
C12 AFQ--CHGNYTFYDTKLVNFTVSTARY----NLAFTFADGDIFMY--YA-
C13 AFH--CHGDYTFYDSKIINFSVDSSRY----NFAFSFADGDIFMY--YA-
C14 --N------ASLNSFKT-FFDLVNCTFFDSWDITADEVKEWFGITQDTQG
C15 LRN--CTYVDTLRDLPL-SFEDVDGGFKHLREFVFKNSDGFLHIYGAYQ-
C16 AFN--CTYDRVKKSFQL-DTSPKTGNFTDLREFVFKNRDGFFTVYQTYT-
C17 KRR------NGLEDIKK-YFNLVNCTYFEEFNVTADERAEWFGITQDSQG
C18 --N------ATLNSFKV-SFNLRQCKFMRTYNISDDENQEWFGITQNAQG
:. :
C1 --PHDLDIGAPAALPAQFLPLKPLWKLPLGLNITNYKVV----TTLKP--
C2 --AISIVRGLPAGFNV----LKPLLKIPFGLNVTSFKTF----LTVYR--
C3 --AISIVRGLPAGFNV----LKPLLKIPFGLNVTSFKTF----LTVYR--
C4 --PVSGRVVGVQPLQ-----LLCLWPIPALLGTATDITFDRNGTSDVRCN
C5 --PVSGRVVGVQPLQ-----LLCLWPIPALLGTATDITFDRNGTSDVRCN
C6 --LPTSGLNLLEDTP-----LHFYMSVGVGANLPNAQFF----QSLSR--
C7 --FLQGKLVSTQPLK-----LMCLWPVPSLLANDEKIFFN---ASGATCN
C8 --VLDGRVLTNQPLL-----VACLWPVPSLLSNDNPIHFNMSLNTGVNCN
C9 --LVAGRVVGIQPLR-----LLCLWPVPSTTANDDKIYFN---TTGANCN
C10 --LVAGRVVGIQPLK-----LLCLWPVPSITANDDKIYFN---TTGANCN
C11 --LPKGSFDFNQSFP-----LQYFMTLPVGGNLPRAQFF----QSIVRQG
C12 --ALGDSLNLPTAYP-----LQPYLRIPAGFKPDVVQFF----QAITRP-
C13 --PLGDSQNVAKAFP-----LQPYLRIPAGFKPKRAQFF----QAIIRK-
C14 VHLYSSRKGDLYGGN-----MFRFATLPV---YDAIKYY----TVIPR--
C15 --PYDLAIGATAALPAQFLPLKPLWKLPLGLNITNYKVV----TTLKP--
C16 --PVNLLRGLPSGLSV----LKPILKLPFGINITSFRVV----MAMFS--
C17 VHLYTSRKNGFNSNN-----LFLFASVPI---YDKINYY----TVIPR--
C18 VHLYSSRKGDLYGGN-----MFLFDTLPV---YETLKYY----TVIPR--
: :
C1 --------TNQAFQAAYIVGNLKHTTMMLSFNENG-----TMSNAID---
C2 ----VAAGSISVASSAYFVGYLKPLTFMLSYDLNG-----TINNAVD---
C3 ----VAAGSISVASSAYFVGYLKPLTFMLSYDLNG-----TINNAVD---
C4 GFSSNATADAMRFSLNFTENGVFAKEGVITLKTVSNTFKFSCSNSSTYTS
C5 GFSSNATADAMRFSLNFTENGVFAKEGVITLKTVSNTFKFSCSNSSTYTR
C6 SLDGSGDGKCFSAQNNLYIAPIVQRELLVAYSDAG-----IPTKVAD---
C7 GYQFDGVADAIRFSLNFSSDQVFNGVNNIVFDVEGGTFEFFCTNDTSVNP
C8 GYSEVREVSHLRFALNFTNQQVLNGVHNIDLLGDTFNFTFTCTNNSDITK
C9 GFVGEGVADALRFSLNFTSNQVLNGVHNIILESTSSKFTFTCRNDSESTF
C10 GFVGEGVADALRFSLNFTANQILNGVHNIILEGTEAKFTFTCRNDSESTL
C11 GTNNGADDRCVDFNISLHIAHLVNRDLLVSYFNNG-----SVANAAD---
C12 -NGESAEVACASSTVSWYVSRLYYKELLVGYDSYS-----SIVNVSF---
C13 -TAEDAEFQCSRYTTSWYVSYLKYHELLVGYDANS-----IISNVST---
C14 --SFRAKANRRESWAAFYVYKLHQLTYLLDFSVDG-----YIRRTID---
C15 --------TNQAFQAAYIVGNLKHTTMMLSFNENG-----TMSNAID---
C16 ----KTTSNYVPESAAYYVGNLKQSTFMLSFNQNG-----TIVDAVD---
C17 --SIITPANQRSAWAAFYVYPLHQLSYLLNFDVNG-----YITQAAD---
C18 --SLRSRLNERQAWAAFYVYSLHKLTYLLDFSVDG-----YVRRAID---
: :
C1 ----CSQDPLAELKCTLKQF---DVGKGIYQTSNFRVQPTVDVARFPNIT
C2 ----CSQDPLAELKCTIKNF---NVSKGIYQTSNFRVSPTREVVRFPNIT
C3 ----CSQDPLAELKCTIKNF---NVSKGIYQTSNFRVSPTREVVRFPNIT
C4 PY-VIPFGHIDQPYYCFTTFYINETTGTTATSFVGMLPPIVREFVITRLG
C5 PY-VIPFGHIDQPYYCFTTFFTNETTGATATSFVGMLPPIVREFVITRLG
C6 ----CSLNAGEELFCVTGTF---DPPTGVYPLSRYRAQLS-GSVHITQQL
C7 TYRYVPFGQLTEIYRCFVET---TAENGTHTTFVGILPPVVREIVVSRLG
C8 GERFVPFGFLDNVYRCFVYF---DVGNGTVNKFVGILPPVVKEIVISKFG
C9 YR--VPFGETGQVYYCFIFT---EAGNQSYNTFVGILPPVLKEIVISRYG
C10 FR--VPFGVTGQVYYCFVFT---ESRNQSYNTFVGILPPILKEIVISRYG
C11 ----CAESASEELYCVTGSF---QPPTGVYPLSRYRAQVD-GFVRVTQRG
C12 ----CSSDAESELQCLLGTF---APANGVYSLSNFRSSPT-DNVRITNSA
C13 ----CSFDAESELQCLLGTF---TPANGVYSLSNFRSSPV-DTVRITNSA
C14 ----CGHDDLSQLHCSYTSF---EVDTGVYSVSSYEASAT-GTFIEQPNA
C15 ----CSQDPLAELKCTLKQF---DVGKGIYQTSNFRVQPTVDVARFPNIT
C16 ----CSQDPLAELKCTTKSF---NVSKGIYQTSNFRVSPVTEVVRFPNIT
C17 ----CGYNDYTQLVCSYGDF---NMKSGVYSTSYYSAKPV-GAYYEAHVY
C18 ----CGYDDVAQLFCSYESF---DVDSGVYSVSSFEAQPR-GYFVEQPHS
. :
C1 NVC--PFDKVFNATRFPSVYAWERTKISD-----------------CVAD
C2 NRC--PFDSIFNASRFPSVYAWERTKISD-----------------CVAD
C3 NRC--PFDSIFNASRFPSVYAWERTKISD-----------------CVAD
C4 DVYLNGYRIFSVGEVVSVNFNISSTDHRDFWTVAFVKDAEVMLDIEDTYI
C5 DVYLNGYRIFSVGEVVSVNFNISSTDHRDFWTVAFVKNAEVMLDIEDTYI
C6 SHCALPYKDILDPPQ-PVV--WKRYTVAN-----------------CSFD
C7 AIYINGYRLISLPVIESIVFNVTSKVGSDFWTVAFAQDVEVLLELNATNI
C8 TVYINGVNMATLPPVNSVIFNVTSTVGSDFWTVGFTDLADVMIDINATRI
C9 SIYLNGVKLFSLPTLESVIFNVSSNVGSDFWTIAYAQDAQVMVDLNATSI
C10 SIYLNGVKLFSLPVLQSVIFNVSSKVGSDFWTVAYAQDAQVMVDLNATSI
C11 DYCQPPYADLLEPPQ-PVV--WRRFMLYN-----------------CAFD
C12 SSCSVPYSVLSRPPL-PFV--WKRYAISN-----------------CKFD
C13 KACSVPYNLLETPPL-PFV--WKRHSISN-----------------CKFD
C14 TEC--DFSPMLKGVA-PQVYNFKRLVFSN-----------------CNYN
C15 NVC--PFDKVFNATRFPSVYAWERTKISD-----------------CVAD
C16 NLC--PFDKVFNATRFPSVYAWERTKISD-----------------CVAD
C17 PDC--NFTDLFRENA-PTIMQYKRQVFTR-----------------CNYN
C18 SEC--DFSAMFSSQP-PQVYNFSRLVFTN-----------------CNYN
.
C1 YTVFYNSTSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
C2 YTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
C3 YTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
C4 KQLLYCNNPVNVVKCQQLK-FVLEDGFYSYVPASEDSLPRTIVRLPRFMT
C5 KQLLYCNNPVNVVKCQQLK-FVLEDGFYSYAPQSEDSLPRTIVRLPRFMT
C6 FDVIVNNLPTYELKCYGVAPTRLAQMCYSGVTLDVMRINST------HFT
C7 VDILYCESPINKLKCQQLT-FSLDDGFYPASSAYTEYTPRSYVALPYHAT
C8 VDLLYCDTPINKLKCQQLS-FSLDDGFYTTTNVYKQAVPRTYVALPYHAT
C9 TDLLYCDTPLNRLKCQQLS-YALEDGFYPTTNIYTKDIPRSYVALPYHAT
C10 TDLLYCDTPLNRLKCQQLS-YALEDGFYPTTNIYTRDIPRSYVALPYHAT
C11 FSVVIDNLPTHQLQCYGISPKRLASMCYSSVTIDVMRINAT------HLN
C12 FQALLSHLPTFQLRCFGISPTKLATMCFGTVTLDIMLVNVT------HYN
C13 FQALLSHLPSFQLRCYGISPTKLSSMCFGTVSLDVMLVNVT------HYN
C14 LTKLLSLFAVDEFSCNGISPDAIARGCYSTLTVDYFAYPLS------MKS
C15 YTVFYNSTSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
C16 YTVFYNSTSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
C17 LTLLLSLVQVDEFVCDKITPEALATGCYSSLTVDWFAFPYA------WKS
C18 LTRLLSLFQVSEFSCHQVSPSALASGCYSSLTVDYFAYPLS------MAS
. . * : : : :
C1 QVAPGQTGVIADY-----------------------NYKLPDD---FIG-
C2 QVAPGETGVIADY-----------------------NYRLPDD---FTG-
C3 QVAPGETGVIADY-----------------------NYRLPDD---FTG-
C4 HNFINVSVVVSFYFDDGKHDTPVGSDFYECATCAPKYYHVRFTDYWLDG-
C5 HQHINISVVVSFYFDDGQADTPVGSDFYACATCAPKYYKMVFADVDWTGI
C6 NMLGNVPDVFSMY-----------------------NYVLPTD---FYG-
C7 HTEVVLGVHLSLY-----------------------TKHSATL---NGG-
C8 HSAINITAEVSVN-----------------------SNDDRFL---INGL
C9 HAVLNITAYIGD------------------------KKDDRIQ---INGF
C10 HMVLNITAYIGD------------------------KKDDRIQ---INGF
C11 NLLNRVPDSFSLY-----------------------NYAVPDN---FYG-
C12 NLLNDVPDDFSLY-----------------------NYQLPRN---FYG-
C13 NLLNDVPDDFSLY-----------------------NYQLPRN---FYG-
C14 YIRPGSAGNIPLY-----------------------NYKQSFA---NPT-
C15 QVAPGQTGVIADY-----------------------NYKLPDD---FIG-
C16 QVAPGQTGVIADY-----------------------NYKLPDD---FTG-
C17 YLAIGSADRIVRF-----------------------NYNQDYS---NPS-
C18 YLRQGSTGPIAQF-----------------------NYKQDFT---NPT-
.
C1 ----------CVIAWNTAKQ------DVGSYFYRSHRSSKLK-----PFE
C2 ----------CVIAWNTANQ------DVGSYFYRSHRSTKLK-----PFE
C3 ----------CVIAWNTANQ------DVGSYFYRSHRSTKLK-----PFE
C4 ----SNHTNVCVNTASFTTRLFTDYFGT-SGAVRIEIEPGTC-----PFG
C5 HGDILNVTGVCVNAASFTTKFRSSYLGADGVYVG--LEAGSC-----PFS
C6 ----------CVHAYYINST-NKRYTVAYQRGYSKVITPGGR-----QPY
C7 ------NDTICVNTTQFTTVLNAS---VYTG-ARGDVVNVNC-----PFT
C8 ------NGTFCVNTTQFTV--ITHFTQYTG--MRVAIENLDC-----PFT
C9 ------NDSFCVNTTQFTTN----FVQTDSGIIKAELKNGDC-----PFT
C10 ------NDSFCVNTTQFTTN----FVQTDSGIIKAELKNGDC-----PFT
C11 ----------CLHAFYLNST-T-----AYAVANRFPIKPGGR-----QSN
C12 ----------CLHSYYLPND-T-----AFSYTVASRIRYPSW-----VHS
C13 ----------CLHSYYLPNS-T-----TFNYIVASRSQSPSW-----VYN
C14 ----------CRVMASVPANVTITKPEAYGYISKCSRLTGDYQHIETPLY
C15 ----------CVIAWNTAKQ------DVGSYFYRSHRSSKLK-----PFE
C16 ----------CVIAWNTAKQ------DVGSYFYRSHRSSKLK-----PFE
C17 ----------CRIHSKVNSSVGISYSGLYSYITNCNYGGFNKDDVVKPGG
C18 ----------CRILAAVPSNVTIPLPQSYMWLTQCYTNSPSN-----SHY
*
C1 RDLSSEENGVLTLST----YDFNQNVPL---------E-YQATRVV----
C2 RDLSSDENGVRTLST----YDFNPYVPL---------D-YQATRVV----
C3 RDLSSDENGVRTLST----YDFNPYVPL---------D-YQATRVV----
C4 FD---TLNNYLAFGS----LCFSTV-P----------NGGCTMNIVTQGP
C5 FD---TLNNYLTFGS----LCFSTV-P----------NGGCTMNVVSKGP
C6 ND---YVRTLLNTPNE---IC------T---------R-ANCFGLV----
C7 WA---SLNDYLSFGT----ICFSFE-PL---------PGGCTMSIN-VVN
C8 LD---SLNNFLSFGS----ICFSTY-AV---------GGGCRMRLD-KVL
C9 FD---SINNYLTFDS----ICFSIE-PI---------GGGCTMNIV-RTW
C10 FD---SINNYLTFDS----ICFSIE-PI---------GGGCTMNIV-RTW
C11 RD---YIATVLNAAH----YT------T---------F-SYIFGLA----
C12 ITPGGRQPVGPFLDS----LQSSSK-PC---------T-GSCLGLA----
C13 ISPGGRQPPSSFLNT----LPGSAK-PC---------Q-GSCLGLA----
C14 INPG-EYSICRDFAP----WGFSEDGQVFKRTLTQFEGGGLLVGVGTRVP
C15 RDLSSEENGVLTLST----YDFNQNVPL---------E-YQATRVV----
C16 RDLSSEENGVRTLST----YDFNQYVPL---------E-YQATRVV----
C17 RASQPCVTGALNSPTNGQVWSFNFGGVP-----------YRTSRLTYTDH
C18 VEAG-SYTPCLGLAS----RGFNTFNSM---------HYDPATGLTATGS
:
C1 -------------VLSFELLNAPATVC---------GPKLSTPLVK--NQ
C2 -------------VLSFELLNAPATVC---------GPKLSTELVK--NQ
C3 -------------VLSFELLNAPATVC---------GPKLSTELVK--NQ
C4 YGQ----PHTFA-VLYVSYTDGDNIIGVPPSNIPAYGVADMSQVYL--DT
C5 YGE----PHTFA-VLYVSYTDGDNVIGVPPYNIPPYGVSDMSIVYF--DV
C6 -------------VISLNPASGSHLVC---------PTNNDTDVVE--NQ
C7 LGY----YTPFA-TLYVGYTRGHGITG---VSQKVGGIFDPSFITL--DT
C8 IST----PTPWR-ILNIVYTDGDRTTG---VTKASGGIFDPSELYV--GV
C9 FGQ----SVPWR-TLYVSYTKGSRITG---VKTPNTGVFDPSTFVE--DV
C10 FGQ----SVPWR-TLYVSYTKGSRITG---VKTPNTGVFDPSTFVE--DV
C11 -------------VITLKPASGNKLVC---------PIANDTDIIT--ER
C12 -------------VISLSIASANKLVC---------PVGNDTDIVP--DT
C13 -------------VISLSVASANKLVC---------PVGNDTDIVT--GN
C14 MTA----NLEMGFVISVQYGTDTNSVC------PMLDLGESSTITNRLGK
C15 -------------VLSFELLNAPATVC---------GPKLSTPLVK--NQ
C16 -------------VLSFELLNAPATVC---------GPKLSTSLVK--NQ
C17 LKN----PLDMVYVITVKYEPGAETVC-----PKQVRPDYSTNITGLLGS
C18 YQYISEEALEMAFIISVQYGTDSNSVC------PLQAVHNDTKVDDKLGR
: . : .
C1 CVNFNFNGLKGTGVLTD-SSKTFQSFQQFGRDASDFTDSVRDPQTLQILD
C2 CVNFNFNGLKGTGVLSS-SSKRFQSFQQFGRDASDFTDSVRDPQTLEILD
C3 CVNFNFNGLKGTGVLSS-SSKRFQSFQQFGRDASDFTDSVRDPQTLEILD
C4 CTTYTIYGMTGRGIITR-SNNTFITG-LYYTSNAGNLLAYKNSTTGIVYN
C5 CTTYTIYGMTGRGIITP-SNNTFITG-LYYTSLAGDLLAYKNSTNGIVYN
C6 CVKYNFYGYSGNGVLTK-SNLTIPDNKLFVASNTGSIIAVK--AQDTVYS
C7 CTEYTVYGITGKGVITS-LNKTIVAG-LYYTSTSGQLLGFKNSTTGEVFA
C8 CTDYTIYGISGRGIINQ-LNTTIIAG-LYYTSPAGQLLGFKNATTGDIYG
C9 CTDYTIYGMSGRGVISR-SNASYIAG-LYYTAISGQLLGFKNATTGETFV
C10 CTDYTIYGMSGRGVISR-SNASYIAG-LYYTAISGQLLGFKNATTGETFV
C11 CVQYSLYGYTGTGVLSKNTSLTVPNGKVFTASSTGAIIGVF--INGTMYS
C12 CVNYNIYGYQGTGVISR-SNYTLPSSKVFSLSSSGELTVFA--VGSSFYQ
C13 CVNYNIYGYQGTGVITT-SNYTLPSTKVFSLSASGELTVFS--VGSSFYQ
C14 CVDYSLYGVTGRGVFQN-CSAVGVKQQRFVYDSFDNLVGYY-SDDGNYYC
C15 CVNFNFNGLKGTGVLTD-SSKTFQSFQQFGRDASDFTDSVRDPQTLQILD
C16 CVNFNFNGFKGTGVLTD-SSKTFQSFQQFGRDASDFTDSVRDPQTLRILD
C17 CISYDIYGITGTGVFQL-CNATGIPQQKFVYDKFDNIIGFH-SDDGNYYC
C18 CIEYSLYGVTGRGVFQN-CTPVGLKQQRFVYDGFDNLVGYH-SDNGNYYC
* : . * * *:: . : .
C1 ISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTIHADHLTHSWRVY
C2 ITPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVY
C3 ITPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVY
C4 IYPCQLAGQVAVI--SDN------IVGMASSTPNVSLDFNVTVVADSFYY
C5 VYPCQLSGQVAVI--SDN------IVGMASSTPNVSLDFNVTVVADSFYY
C6 ISPCVSVPVSVGY--DPNYEQ-ALLFNGLECNQRAVAVSIPASAY-WLRT
C7 VRPCDLASQVAVY--QND------IIGAMTASRNSSFGFANVSELSNFYY
C8 VRPCALSSQAAVY--QNE------IIGVMTASANESFGFQNVTETPKFFY
C9 VVPCDLSSQAAVI--GDK------VVGVMTSITNSSFEFVKSIETPNFYY
C10 VVPCDLSSQAAVI--GDK------VVGVMTSITNSSFEFVKSIETPNFYY
C11 ITPCVTVPVSVGY--HANFER-VLLFNGLSCSQRSRAVSRPASTL-WNFS
C12 LSPCAFAPISAAF--YKGYTT-SLLFNNLPCSNRHRAVVEPVSAY-WRRS
C13 LSPCAFAPISAAF--YKGYTT-SLLFNNLPCSGRSRAVVEPVSDY-WRAS
C14 VRPCVSVPVSVIY--DKDTNLHATLFGSVACEHVTTMMSQFSRLTQSNLR
C15 ISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTIHADHLTHSWRVY
C16 ISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTLHADQLAPSWRVY
C17 VAPCVSVPVSVIY--DDNTNQYATLFGSVACQHISTMAAQFSRETRASLV
C18 VRPCVSVPVSVIY--DKATNNHATLFGSVACEHVDTMMSQFSRMTQSRLR
: ** . : .
C1 TTGPHV---FQTQAGCLIGAEHVN--VSYQCDIPI----GAGICASYHTA
C2 STGVNV---FQTQAGCLIGAEHVN--ASYECDIPI----GAGICASYHTA
C3 STGVNV---FQTQAGCLIGAEHVN--ASYECDIPI----GAGICASYHTA
C4 LSNSAE-----------------------PCDQPVLTYAGIGICADGSIT
C5 LSNSAE-----------------------PCDQPVLTYAGIGICADGSIT
C6 VSDNQTAGVFDTPSGCVYNVINRTDITVNACDMPI----GNSLCLINATS
C7 HSNGHL-----------------------GCEEPVLIYGKMGICSDGSLT
C8 HSNGNS-----------------------TCTEPVLTYGSVGVCPDGTLI
C9 LTNATA-----------------------NCTSPVITYGKLGVCEDGSIA
C10 LTNATA-----------------------NCTSPVITYGKLGVCEDGSIA
C11 VSDESA---IDTLSGCVVNAILHNDTTVSTCSMPL----GNSLCLINDTT
C12 VADNNT---FDTTAGCIFNAYNLTSIVVNQCDLPI----GDSYCLQPSLI
C13 VVNNST---FDTSAGCIFNAINSTSIVVNQCDLPI----GDSYCLQPSTI
C14 RRDSNA--PLQTAVGCVVGLSNNSL-VVSDCRLPL----GQSLCAVPPVT
C15 TTGPYV---FQTQAGCLIGAEHVN--ASYQCDIPI----GAGICASYHTA
C16 TTGPYV---FQTQAGCLIGAEHVN--ASYQCDIPI----GAGICASYHTA
C17 SRNMQN--LLQTSVGCVMGFHETND-TVEDCNLSL----GQSLCAIPPNT
C18 VRNIDDAGPMQTSVGCVVGLVNTSL-IVDNCQLPL----GQSLCAVPATT
. * .: . *
C1 SLLRSTGQ------KSIVAYTMSLGAENSVAYANNS-IAIPTNFSISVTT
C2 STLRSVGQ------KSIVAYTMSLGAENSIAYANNS-IAIPTNFSISVTT
C3 STLRSVGQ------KSIVAYTMSLGAENSIAYANNS-IAIPTNFSISVTT
C4 NNTARRAA-----------------SDPISPVISGN-ISVPTNFTFSVQV
C5 NNTARRAA-----------------SDPISPVISGN-ISVPTNFTFSVQV
C6 TQARATSGDDTKSYLSLVNYDPTY-TSLTKVLTPVYWVSIPTNFTLAAGT
C7 EVNNKDAE-----------------QQPVSPIATAN-VTVPVNFTVSVQV
C8 MVQTRSGN-----------------VNPVSPIVSGN-ITIPLNFTVSVQV
C9 EVKVNTHV-----------------QTPVSPISTGN-ITVPSNFTVSVQV
C10 EVKVNTHV-----------------QTPVSPISTGN-ITVPSNFTVSVQV
C11 VAIAHAVG---LPKLYLVNYDPLYDNNSATPITPVYWVKIPTNFTLTATD
C12 KGFEATLS--------LVTYNPL--ADSLTPITPVYQVSVPTNFTLVAST
C13 SRQGSTLL--------LVTYDPL--SDTLTPITPVYEISVPTNFTLVAST
C14 SFRRRSAS---EFQLAVLNYTSPIVVTPIN--SSGFTAAIPTNFSFSVTQ
C15 SLLRSTGQ------KSIVAYTMSLGAENSVAYANNS-IAIPTNFSISVTT
C16 SLLWSTGQ------KSIVAYTMSLGAENSVAYANNS-IAIPTNFSISVTT
C17 NLRVGRST----FGLGSLAYNSPLRVDALN--SSEFKVSLPLNFTFGVTQ
C18 IRAATGTT--SSLQLATINFTEPHMLTPIN--SSRFIVEIPTNFSFGVTQ
:* **:. .
C1 EVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQ
C2 EVMPVSMAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGVALEQ
C3 EVMPVSMAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGVALEQ
C4 EYIQLMLKPVTVDCSVYVCNGNPRCLQLLAQYASACRTIEQALQ-LSARL
C5 EYIQLMLKPVTVDCSVYVCNGNPRCLQLLAQYASACRTIEQALQ-LSARL
C6 EYIQTTSPKINIDCAKYLCGDSDKCLTVLLQYGTFCDDVNKALAEVSSVI
C7 EYLQMYMQPVSVDCNTYVCSGNVHCLRLLTQYASACRNIESSLQ-LSARL
C8 EYLQMYLQPVSVDCNMYVCGGNPHCLRLMSQYASACRTIEESLQ-LGARL
C9 EYLQMYMRPVSVDCAMYVCNGNPHCLRLLTQYASACRTIEDALQ-LSARL
C10 EYLQMYMRPVSVDCAMYVCNGNPHCLRLLTQYASACRTIEDALQ-LSARL
C11 EFIQTNAPKVTIDCARYLCGDSSRCLNILLHYGTFCDDINKALAKVNTIL
C12 EYIQTYASKISIDCAKYLCGDSSQCRTVLLQYGTFCNDVNVALTRVFTLL
C13 EYIQTYASKISIDCAKYLCGDSSQCRTVLLQYGTFCNDVNVALTRVFTLL
C14 EYVETSIQKVTVDCKQYVCNGFSRCEKLLVEYGQFCSKINQALHGANLRQ
C15 EVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQ
C16 EVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQ
C17 EYIETSIQKITVDCKQYVCNGFAKCEKLLEQYGQFCSKINQALHGANLRQ
C18 EFIQTTIQKVTVDCKQYVCNGFEKCEQLLREYGQFCAKINQALHGANLRQ
* : .:** *:*.. .* :: .*. * :: :*
C1 DKNTQEVFAQVKQMYKTP-TIRDFGG-FNFSQIL----PDPLKPTKRSFI
C2 DKNTQEVFAQVKQMYKTP-AIKDFGG-FNFSQIL----PDPSKPTKRSFI
C3 DKNTQEVFAQVKQMYKTP-AIKDFGG-FNFSQIL----PDPSKPTKRSFI
C4 ESVEVNSMISISQQALDLGVIDNFNHDFNLTNVL------PASVGGRSAV
C5 ESVEVNSMISISQQALDLGVIDNFNHDFNLTNVL------PANVGGRSAV
C6 DSTMVSLVSELTADVVRS-ENTAFDTTYNFTSLMGCLGSSCNTRNYRSAL
C7 ESLEVNSAITVSERAASLANITNFEN-YNLSVLL------P-NLNGRSAM
C8 ESTEVANTISVSSQAVQLANITNFDS-YNVSVLL------P-RANGRSFI
C9 ESIEVNSVISVSEDALELANISNFDH-YNMSALL------P-KKNGRSFI
C10 ESIEVNSVISVSEDALELANISNFDH-YNMSALL------P-KKNGRSFI
C11 DSALLSLSKELSINTRDEIQSFAFGGDYNFTGLMGCLGPNCGATTYRSAL
C12 DNSLVDTFSSLKSTAPVQ---LAYTGDFNFTSLVGCIGTDCDSKSHRSAL
C13 DNSLVDTFSSLKSTAPAQ---LAYTGDFNFTSLVGCVGTDCDSKSYRSAL
C14 DESVYSLYSNIKTTSTQT-LEYGLNGDFNLT-LLQVPQIGGSSSGYRSAI
C15 DKNTQEVFAQVKQMYKTP-TIRDFGG-FNFSQIL----PDPLKPTKRSFI
C16 DKNTQEVFAQVKQMYKTP-TIRDFGG-FNFSQIL----PDPLKPTKRSFI
C17 DDFVRNLFESVKTPQTVP-LTTGFGGEFNLT-LLEPLSVSTGSSNARSAL
C18 DESVSNLFSNIKTQATQP-LDAGLTGDFNLT-LLQVPKVVTSQYSYRSAI
:. :. :*.: :: ** :
C1 EDLLYNKVTLADAGFMKQ-YADCL---GGINARDLICAQKFNGLTVLPPL
C2 EDLLFNKVTLADAGFMKQ-YGECL---GDISARDLICAQKFNGLTVLPPL
C3 EDLLFNKVTLADAGFMKQ-YGECL---GDISARDLICAQKFNGLTVLPPL
C4 EDLLFDKVVTSGLGTVDADYKECAS-RTANTVAEVGCVQYYNGIMVLPGV
C5 EDLLFDKVVTSGLGTVDADYKECAS-RTANWVAEVGCVQYYNGIMVLPGV
C6 SDLLYNKVKVADPGFMSS-YQKCIDSQWGGSVRDLICTQNFNGISVLPPI
C7 EDLLFNKVVTNGLGTVDQDYKQCIKDKGVGDVADVACAQYYNGVMVLPGV
C8 EDLLFDKVVTSGLGTVDQDYKQCVNEWGIGEVADLSCAQYYNGIMVLPGV
C9 EDLLFNKVVTNGLGTVDQDYKKCMKDKGFGEASDIACVQYYNGIMVLPGV
C10 EDLLFNKVVTNGLGTVDQDYKKCMKDKGFGEASDIACVQYYNGIMVLPGV
C11 SDLLYDKVKITDPGFMQS-YQKCIDSQWGGSVRDLLCTQTYNGIAVLPPI
C12 SDLLFSKVSVADPGFMQS-YQQCLDAQWGGNIRDLLCTQTFNGISVLPPI
C13 SDLLFNKVSVADPGFMQS-YQKCLDSQWGGNIRDLLCTQTFNGISVLPPI
C14 EDLLFDKVTIADPGYMQG-YDDCMK-QGPQSARDLICAQYVSGYKVLPPL
C15 EDLLYNKVTLADAGFMKQ-YADCL---GGINARDLICAQKFNGLTVLPPL
C16 EDLLYNKVTLADAGFMKQ-YADCL---GGINARDLICAQKFNGLTVLPPL
C17 EELLFDKVTIADPGYMQG-YDDCMQ-QGPASARDLICAQYVAGYKVLPPL
C18 EDLLFNKVTIADPGYMQG-YDECMK-QGPPSARDLICAQFVAGYKVLPPL
.:**:.** . * :. * .* :: *.* * *** :
C1 LTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
C2 LTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
C3 LTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
C4 VDQSLLAQYSAALTGAMVLGGITAAAA----VPFSIAVQSRLNYLALQTD
C5 VDQSLLAQYSAALTGAMVLGGITAAAA----VPFSIAVQSRLNYLALQTD
C6 VSPAMQSLYTSLLVGAVASAGYTFGITSVGVIPFATQLQFRLNGLGVTTQ
C7 VDDTKMSLYTASLVGGMVLAGFTAGAA----IPFSLAVQARLNYVALQTD
C8 VDANMMTLYTASLTGAMVFGGITASAS----IPFSLAVQSRLNYVALQTD
C9 VDDSKMALYTAALTGGMLLAAFTAGAS----IPFSLAVQSRLNYVALQTD
C10 VDDSKMALYTAALTGGMLLAAFTAGAS----IPFSLAVQSRLNYVALQTD
C11 VSPAMQALYTSLLVGAVASSGYTFGITSAGVIPFATQLQFRLNGIGVTTQ
C12 VSPSMQALYTTALVGGIAASGFTFGVSSAAVIPFATQLQFRLNGLGVTTN
C13 VSPSMQALYTTALVGGIAASGFTFGVSSAAVIPFATQLQFRLNGLGVTTN
C14 YDPNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSMFYRLNGVGITQQ
C15 LTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
C16 LTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
C17 MDVNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSIFYRLNGVGITQQ
C18 YDPNMESMYTTSLTGAILGAAWTAGASSFAAIPFAQSVFYRMNGIGITQQ
: *:: * .. .. * . :**: : *:* :.: :
C1 VLYENQKQIANQFNKAITQIQESLT--------------TTATALGKLQD
C2 VLYENQKQIANQFNKAISQIQESLT--------------TTSTALGKLQD
C3 VLYENQKQIANQFNKAISQIQESLT--------------TTSTALGKLQD
C4 VLQRNQQQLANSFNAAMGNITEAFGRVNDAIEQTSHAISTVAQALDKVQN
C5 VLQRNQQQLANSFNAAMGNITDAFGRVNDAIEQTSHAVSTVAQALNKVQT
C6 VLVQNQQLIANSFNNALTNIQKGFD--------------ATNLALSQMQS
C7 VLQRNQQILAESFNSALSNITEAFTEVNEAIKNTADAINTVATALGKVQS
C8 VLNRNQEILAQSFNSALGNITAAFSEVNHAFQETSDAINTVAQALGKVQT
C9 VLQKNQQILATSFNNAMSNITVAFTEVNQAIKETSDAINTVAKALGKVQS
C10 VLQKNQQILATSFNNAMSNITVAFTEVNQAIKETSDAINTVAKALGKVQS
C11 VLVENQKLIASSFNNALVNIQKGFT--------------ETSIALSKMQD
C12 VLMENQQLIANAFNKALVSIQEGFT--------------ATNQALNKIQT
C13 VLMENQQLIANAFNKALVSIQEGFT--------------ATNQALNKIQT
C14 VLSENQKLIANKFNQALGAMQTGFT--------------TSNQAFSKVQD
C15 VLYENQKQIANQFNKAITQIQESLT--------------TTATALGKLQD
C16 VLYENQKQIANQFNKAITQIQESLT--------------TTSTALGKLQD
C17 VLSENQKIIANKFNQALGAMQTGFT--------------TTNEAFQKVQD
C18 VLSENQKQIANKFNQALGAMQTGFT--------------TTNLAFAKVQE
** .**: :* ** *: : .: *: ::*
C1 VVNQNAQALNTLVKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGR
C2 VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGR
C3 VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGR
C4 VVNDQGMALSQLTKQLASNFQAISSSIEDLYNRLDRVEADQQVDRLITGR
C5 VVNDQGMALSQLTKQLASNFQAISSSIEDLYNRLDRVEADQQVDRLITGR
C6 VINQHAQQLQTLVNQLGNSFGAISSSINEIFSRLDGLEANAQVDRIINGR
C7 VVNQQGEALAQLTKQLSSNFQAISSSIEDIYLRLDKLAADAQVDRLISGR
C8 VVNEQGQALSQLTRQLASNFQAISNSIEDIYNRLDGLTADAQVDRLITGR
C9 VVNEQGQALSQLTRQLASNFQAISSSIEDIYNRLDSLAADAQVDRLITGR
C10 VVNEQGQALSQLTRQLASNFQAISSSIEDIYNRLDSLAADAQVDRLITGR
C11 VINQHAAQLQTLVTQLGNSFGAISSSINEIFSRLEGLAANAEVDRLINGR
C12 VVNNNALQLQVLVQQLGNTFGAISASVNEIFSRLDLLEANAEVDRLISGR
C13 VVNNNALQLQVLVQQLGNTFGAISASVNEIFSRLDLLEANAEVDRLISGR
C14 AVNANAQALSKLASELSNTFGAISSSISDILARLDTVEQDAQIDRLINGR
C15 VVNQNAQALNTLVKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGR
C16 VVNQNAQALNTLVKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGR
C17 AVNTNAQALAKLASELSNTFGAISSSIGDIIQRLDVLEQEVQIDRLINGR
C18 AVNANAQALSKLASELSNTFGAISSSISDILKRLDAVEQEAQIDRLINGR
.:* :. * *. :*...* *** : :: **: : : ::**:*.**
C1 LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM
C2 LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGRGYHLM
C3 LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGRGYHLM
C4 LAALNAFVAQQLTKYTDVRASRQLAQEKINECVKSQSFRYGFCGNGTHVF
C5 LAALNAFVAQQLTKYTDVRASRQLAQEKINECVKSQSFRYGFCGNGTHVF
C6 TVVLNTYVTQLLLKASEVRSQAALARQKISECVKAQSLRNDFCGNGTHVF
C7 LAGLNAFVTQTLTKYTEVRASRQLALQKVNECVKSQSSRYGFCGNGTHLF
C8 IGALNAFVAQTLTKYTEVRASRQLAIQKINECVKSQSARFGFCGNGTHLF
C9 LGALNAFVTQTLTRYTDARASRQLAIQKINECVKSQSMRYGFCGNGTHLF
C10 LGALNAFVTQTLTRYTDARASRQLAIQKINECVKSQSMRYGFCGNGTHLF
C11 MMVLNTYVTQLLLQASEAKAQNALAVQKISECVKAQSLRNDFCGNGTHVL
C12 MVVLNTYVTQLLIQASELRSQAELAKQKMSECVKSQSLRNDFCGNGTHVL
C13 MVVLNTYVTQLLIQASELRSQAELAKQKMSECVKAQSTRNDFCGNGTHVF
C14 LTSLNAFVSQQLVRSETAARSAQLASDKVNECVKSQSKRNGFCGSGTHIV
C15 LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM
C16 LQSLQTYVTQQLIRAAEIRTSANLAATKMSECVLGQSKRVDFCGKGYHLM
C17 LTTLNAFVAQQLVRSESAARSAQLAKDKVNECVKSQSTRSGFCGQGTHIV
C18 LTSLNAFVAQQLVRSETAARSSQLAVDKVNECVKSQSKRNGFCGSGNHIV
*:::*:* * : . ** *:.*** .** * .*** * *:.
C1 SFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHEGK---AYFPREGVFVS
C2 SFPQAAPHGVVFLHVTYVPSQEKNFTTAPAICHEGK---AYFPREGVFVS
C3 SFPQAAPHGVVFLHVTYVPSQEKNFTTAPAICHEGK---AYFPREGVFVS
C4 SVVNAAPDGMMFFHSVLLPTAYMEVAAFSGLCVEGK-GFVLREVGNVLFE
C5 SVVNAAPDGMMFFHSVLLPTAYMEVAAFSGLCVEGK-GFVLREVGNVLFE
C6 SVPQLAPNGVMFIHYTYQPTAYALVQTAAGLCYNGT---GYAPLSGMFVL
C7 SVVNAAPNGIMFFHTVLIPSSYTTVQAWAGVCVNGDVGLILRDVRNTLFY
C8 SIANAAPNGIMLFHTVLLPSEYTTVQAWAGICIDNNVGLILRDFKTTLFF
C9 SIANAAPNGVMLFHTVLIPTEFVTVEAWSGVCVDGTHGLILRDVRTTLFQ
C10 SIANAAPNGVMLFHTVLIPTEFVTVEAWSGVCVDGTHGLILRDVRTTLFQ
C11 SIPQLAPNGVLFIHYAYTPTDYALVQTSAGLCYNGT---GYAPLRGMFVL
C12 SIPQLAPNGMLFIHYSYQPTKYAQVYTTAGLCFNGT---GFVPRDGLFVR
C13 TIPQLAPNGMLFIHYSYQPTNYVQVYTTAGLCFNGT---GFVPRDGLFVR
C14 SFVANAPNGFYFFHVGYVPTNFTNVTAAYGLCNNNNPLLCIAPIDGYFIT
C15 SFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHEGK---AYFPREGVFVS
C16 SFPQSAPHGVVFLHVTYVPSQERNFTTAPAICHEGK---AYFPREGVFVS
C17 SFVINAPNGLYFMHVGYHPSQHIEVVAAYGLCDAANPTNCIAPVNGYFIK
C18 SFVSNAPNGLYFFHVGYVPTAHINATAAYGLCNTELPPRCIAPIDGYFVT
:. **.*. ::* *: : .:* :.
C1 NGS-------SWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP
C2 NGT-------SWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDP
C3 NGT-------SWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDP
C4 KDG-------RYFITARRMFEPRIPQTADFVQISGCDVVYLNVTRDELPT
C5 KDG-------SYLITARKMFEPRVPQTADFVQISGCDVVYLNVTRDELPT
C6 PND-TN----LWHYTKMNFYNPVNITFENTQVLDSCAVNYSYVNYSVIEP
C7 LDS-------KYYITTRDMYQPRTPVQSDFVRISNCSVSYVNITSEQLGD
C8 SD--------KYYVTPRDMFEPRTPVQADFVRIANCSVNYLNISSSELGT
C9 QGS-------TYYVTTRDMFEPRTPVAADFVRIANCSVTYVNITADSLGE
C10 QGS-------TYYVTTRDMFEPRTPVAADFVRIANCSVTYVNITADSLGE
C11 PNN-TN----MWHFTSMQFYNPVNISYSNTQILTSCSINYTSVNYSVLQP
C12 ENNESQ----VWYFTKASFYNPVNLSYENTHLLDTCGVNYTTVNNSVLNP
C13 ENNASQ----LWYFTKASFYNPVNLSYENTRLLDTCGVNYTTVNNTVLNP
C14 NQTTTYSIDTEWYYTGSSFFKPEPITQVNSRYVSS-DVKFEKLENNLPPP
C15 NGS-------SWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP
C16 NGS-------SWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP
C17 NQT-TRGVD-DWSYTGSSFYAPEPITTLNTRYVAP-QVTFQNISTNLPPP
C18 NSSATRDADPEWYYTGSAFYNPEPITLANTRYVSK-DTKYQELNNKLPPP
: * :: * : :
C1 LQPEL--DSFKQELDKYFKNHTSPDVDLGDISGINASVVDIQKEID----
C2 LQPEL--DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEID----
C3 LQPEL--DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEID----
C4 IIPDY--VDVNGTVEDILSKLPNRTSPELDLDIFNATYLNLTSEIADLTA
C5 IIPDY--VDVNGTVEDILSKLPNRTSPEFNLDIFNATYLNLTSEIADLTA
C6 TPPSS--YNFTEEFNKWYKNHSSYFNNTFNPGDFNFTGVNISEQLA----
C7 IIPDY--LDVNKTLNDLQQSRPNYTVPDLGLDQYNTTILNLTSEIAMLQN
C8 IIPDY--IDVNKTLEELEQQRPNYTLPELDIDRFNNTYLNLSAEIAELQR
C9 IIPDY--IDVNKTLEEL--GRPNFTLPDFNLDQFNNTYLNLSAEIALLNA
C10 IIPDY--IDVNKTLEEL--GRPNFTLPDFNLDQFNNTYLNLSAEIALLNA
C11 SAPSD--YDFQKEFDKFYKNLSTSFNNTFNPNDFNFSMVDVTAQIS----
C12 IEPPN--YNFQEEFDKYFKNQSSQFNITFDSSQFNVSIVNLNEQMA----
C13 IEPPN--YDFQEEFDKYFKNQSSHFNITFDSSQFNVSIVNLNEQMA----
C14 LLENSTDVDFKDELEEFFKNVTSHGPNFAEISKINTTLLDLSDEMA----
C15 LQPEL--DSFKQELDKYFKNHTSPDVDLGDISGINASVVDIQKEID----
C16 LQPEL--DSFKQELDKYFKNHTSPDVDLGDISGINASVVDIQKEID----
C17 LLGNSTGTDFKDELDEFFKNVSTSIPNFGALTQINTTLLDLSDEML----
C18 LLSNQTDESFRDELEEFFKNVSSQGPNFQEISKINATLLDLSDEMK----
.. .:. .. * : ::: ::
C1 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
C2 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
C3 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
C4 RSESLKNTTLELKELIANINATLVDLEWLNRVETYIKWPWWVWLIIVLVL
C5 RSESLKNTTLELKELIANINATLVDLEWLNRVETYIKWPWWVWLIIVLVL
C6 ----------TLTDVVNQLNKSFIDLKQMNVYEQTIKWPWYVWLAMIAGL
C7 KSDSLIESTVKLHKLIEQLNQTYVDLEWLNRLESYVKWPWWVWLAILLAL
C8 KSESLQNSTIQLQELIERINSSYVDLELLKRIETYVKWPWYVWLAIILVM
C9 KSESLYNTTQRLEKSIENINNSYIDLELLNRLESYVKWPWYVWLAIFLAL
C10 KSESLYNTTQRLEKLIENINNSYIDLELLNRLESYVKWPWYVWLAIFLAL
C11 ----------SLHQVVDQLNQSFIDLKKLNVYEKTIKWPWYIWLAMIAGI
C12 ----------ALDSVVKSLNESFIDLKKLGVYTQQPNTPWYAWLGMIAGL
C13 ----------ALDSVVKSLNESFIDLKKLGVYTQTIKWPWYAWLGMIAGL
C14 ----------ILQEVVKQLNDSYIDLKELGNYTYYNKWPWYIWLGFIAGL
C15 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
C16 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
C17 ----------ALQQVVKALNESYIDLKELGNYTYYNKWPWYIWLGFIAGL
C18 ----------VLNEVVKQLNESYIDLKELGNYTYYQKWPWYVWLGFIAGL
* . :* : :**: : : **: ** :. :
C1 VGLFMAIILLCYFTSCCSCCKGMC-SCGSCC-RFDE-DDSEPVLKGVKLH
C2 IAIVMATILLCCMTSCCSCLKGAC-SCGSCC-KFDE-DDSEPVLKGVKLH
C3 IAIVMATILLCCMTSCCSCLKGAC-SCGSCC-KFDE-DDSEPVLKGVKLH
C4 ILFTCLMLFCCCSTGCCGIFSCLASSCGACCDIRGTKLQRYEAIE--KVH
C5 ILFTCLMLFCCCSTGCCGIFSCLASSCGACCDIRGTKLQRYEAFE--KVH
C6 VGLVLAVIMLLCMTNCCSCFKGLC-SCRHC--SYDEIEDVYPAVRVHNKR
C7 IFTSFILLYCCCSTGCCGCTSCLA----DCRGQRLQ------RYEVEKVH
C8 SLFSFLMLYCCCMTGCCGCCSCLTSCCFDCRGKRLQ------QYEVEKVH
C9 ILFSFLMLYCCMATGCCGCCSCLSNSCFDCGGRRLQ------RYEVEKVH
C10 ILFSFLMLYCCMATGCCGCCSCLSNSCFDCGGRRLQ------RYEVEKVH
C11 VGLVLAVIMLMCMTNCCSCFKGMC-DCRRCCGSYDSYDDVYPAVRVNKKR
C12 VGLALAVFMLCCMTNCCSGFRGIC-SCKQC--QYDDYADVYPAVRVSGKR
C13 VGLALAVFMLCCMTNCCSGFRGIC-SCRQC--QYDDYADVYPAVRVSGKR
C14 VALLLCVFFLLCCTGCGTSCLGKM-KCRNCCDSYED-------FDVEKIH
C15 VGLFMAIILLCYFTSCCSCCKGMC-SCGSCC-RFDE-DDSEPVLKGVKLH
C16 VGLFMAIILLCYFTSCCSCCKGMC-SCGSCC-RFDE-DDSEPVLKGVKLH
C17 LALALCVFFILCCTGCGTSCLGKL-KCNRCCDKYEEYD-----LEPHKIH
C18 VALALCVFFLLCCTGCGTNCMGKF-KCNRCCDSYDDYE-----VEPHKIH
: *.* * :
C1 YT
C2 YT
C3 YT
C4 VQ
C5 VQ
C6 TE
C7 IQ
C8 IQ
C9 IQ
C10 IQ
C11 TV
C12 TV
C13 TV
C14 VH
C15 YT
C16 YT
C17 IH
C18 VH
-- Starting log on Thu Oct 27 00:04:09 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.14 sec, SCORE=998, Nseq=18, Len=1552
C1 ---MFIVFLISYTTFLIPY-------------TATTTCFSGPTTENK-LN
C2 -----MLILFVFLPFITAD-----------------TCLNFTNLAAPAYN
C3 -----MLILFVFLPFITAD-----------------TCLNFTNLAAPAYN
C4 MLRNKKFLSLFVFSVVLPCAY-----------SNTGTCSNTINRFMY-LK
C5 MLRNKKFLSLFVFSVVLPCAY-----------SNTGTCSSTINRFMY-LK
C6 ----MWAILLILPAVLA------RPSCI-KS-SVSLSSIEHNVTYQS-FV
C7 -MILSLLLLVIAVCVNNNYAWLGLQRNAIPPSNQDGECGGDPGKLPN-LN
C8 ----MLFLAVYAAELLVLITQIPAVFSYG---GERFTCSPNYASLPN-LN
C9 ----MLSLAVYFAELLVIISYLPDLVT-----GDLNGCADGHNRLPN-LN
C10 ----MLSLAIYIAEILAFLQ-LPDLTTGAP--NKDGDCGDGYNRLPN-LN
C11 ----MLLTVVLSLALIACDASATRPECFANS-NFQLYPRNHTVNITS-LS
C12 ----MVVLLFVMFSLVVAD----RPNCYLP--QYSYTISPATITNTSYFN
C13 ----MVVLLFAILSIALAD----RPLCTINTGNYVLNPIQANITYTVVNS
C14 ----MTRLMCLLMSLLIFVRGCEAQFVDMSPASNNSECLDSQVDAAAFSK
C15 ---MFIVFLISYTTFLIPY-------------TATTTCFSGPTIENK-LN
C16 ----MKILIFAFLVTLV---------------KAQEGCGVINLKTQPTLT
C17 -MTYSVSLLMCLLTFIGAN----AKIVSIPGGVGTGACPQVDMQPSYFIK
C18 ----MTHLMFLLMFLLTPI----RGDVDLGPDSTRDTCDEVVVQVSA-FQ
C1 IS-------SGSRGVY-YPDDIFR---------S-NVSVLVTGRFLRFNT
C2 IA------SSSRRGVY-YPDDIFR---------S-DFLHLVNDYFLPFGS
C3 IA------SSSRRGVY-YPDDIFR---------S-DFLHLVNDYFLPFGS
C4 LGLPESVNDAYVSGYLPVRDNWTCS------AGF-WQYYNAHAIFMSYYS
C5 LGLPESVNDAYVSGYLPVRDNWTCS------AGF-WQYYNAHAIFMSYYS
C6 LS---------KVSCL-LPDPFIA----------YSGQTLKQSIYYADTT
C7 LGLPPN-KTVFVSGYLPLHKGWVCPTHPLGGGGYGTTFNDIHAIYWSYHS
C8 LGLPPN-STVLVSGYLPRPGDWVC------YTGT-TTHDNIRGVFWSYYS
C9 LGLPPN-STVFVSGYLPRKNGWECPTINNQYGGS-TNYENVHGIFWSYHS
C10 LGLPPN-STVFVSGYLPQKTGWVCP--ENKEAGA-TSYEGVHGVFWSYYA
C11 VN---------VANLL-LPDPYIA----------YSGQTLRQNLFMADLS
C12 VN---------PISIV-VPEFSVA----------RTNLVVRQRLQVAAYD
C13 IN---------PVSLV-VPEFSIA----------RTNLVVRQRLYVA-AT
C14 LMWPYPIDPSKVDGII-YPVGRTY----------SNITLSYTGLFPLQGD
C15 IS-------SGSRGVY-YPDDIFR---------S-NVSVLVTGRFLRFNT
C16 QV------SSSRRGVY-YNDDIFR---------S-DVLHLTQDYFLPFHS
C17 HNWPEPIDMNKADGVI-YPNGRTY----------SNITLQTTNLFPRNGD
C18 KDWPQPINPLFADGII-YPTGRSY----------SNISLSYQGLFPRQGD
.
C1 TLTWYN------S---WN----------QAYSSPVLPFGHG--VYFST--
C2 NVTQFY------T---QG----------TNIDNPTLPFRDG--VYFAA--
C3 NVTQFY------T---QG----------TNIDNPTLPFRDG--VYFAA--
C4 TAMDFAIGVGSSKSYN------------TKWGLYFWQKNNGYRAVFRICK
C5 TAMDFAIGVGSSKSYN------------TKWGLYFWQKNNGYRAVFRICK
C6 NVTVYPVTPYKKD--SKA----------TMYNTTQVLVGNG--LFVHTYM
C7 TANAVELAVSSGNGSVTR----------D-WSLYVHHSNNQGYMYFKICR
C8 HGSAVAIGISNKDQTTTP----------DQWALFAHHSNNGGQFYLRICK
C9 TAQRFELGVSNKDQLVNT----------NRWALYVYQNNNEGVLKLRICK
C10 TGQDVEIGVSNFRQLNNT----------NRWALYVHQKNNDHVLHFRICK
C11 RTIIYPITPPAKDS-TGG----------YIYNTTILPVASG--LFVHTWM
C12 -FTKIPITPPHRS----------------IFNNTYFRVGDG--ILVNTHM
C13 NFTRIPITPPGRA---------------VIFNNTYFDAEDG--FFVNTHM
C14 LGTQYLYSVSHAVGHDGDPTTAYI----SNYSLLVNAFDNGFVVRIGAAA
C15 TLTWYN------S---WN----------QAYSSPVLPFGHG--VYFST--
C16 NLTQYFSLNIESD---KI----------VYFDNPILKFGDG--VYFAA--
C17 LGTQYVYSASNEKSRTSNVAFI------SNYSYYGNPFGDGIVIRIGQNS
C18 LGRQYIYSVTHAGDSTLYPPQGIGKHFISNYSAETLPFGNGFVVRIGFSA
.
C1 IDKSNVVRGW--------------IFGTTLDNTTQSA---------LLV-
C2 TEKSNIVRGW--------------IFGSTLDSTSQSA---------IIL-
C3 TEKSNIVRGW--------------IFGSTLDSTSQSA---------IIL-
C4 W-DSKIEPSFQPSNQQARECLINKEFYMGFGHAKNQIFGVSWSGNRVTLH
C5 W-DSKIEPSFKPSNQQARECLINKEFYMGFGHALNQIFGVSWSGNRVTLH
C6 YREQDSSTY--------CQEPFGVVFGTTFEQDRIAI---------IMIV
C7 W-GAVYPLNLSPNHNRG-DCLVNRKFNFRFLHGANQVLGVTWSSNYVTLY
C8 WLNGG-NLDWATESSRG-LCIVNRKFRFQFSHAAGQVIGVTWSSNVVTFY
C9 WLRGQYSLQWLHGARHG-QCAVDRAFNFRFVHAENQVLGVTWSSNYVTFY
C10 WLAGTYTPQSRPWSRYG-QCAVDKRISFTFEHQGNQVLGVTWSSNYVTFY
C11 YRQESTSRTY-------CQEPFGVAFGDTFIQDRIAI---------VIIA
C12 YHRTNIATNLG-SSFYGCQEPFGAAFGNTFVNEPITL---------VMFY
C13 YHTNNIATSPNKPNFYGCQEPFGVAFGNTFENEPITL---------VMVY
C14 NSTGTIVISPSVQTKIKKAYP-AFILGSSLTNTSAGL--PLYANYSLTII
C15 IDKSNVVRGW--------------IFGTTLDNTTQSA---------LLV-
C16 TEKSNVIRGW--------------VFGSTFDNTTQSA---------IIV-
C17 NKTGSVIVGTAQTTIKKIYPA--LMLGSSFGNFSVNNKSGAYFNHTLLIL
C18 NKTGSLVISPTTSKVIKKIYP-AFMLGTAVTSFAHGH-AGRYLNHTLVIL
: . : .
C1 ------------NNGSAITIEVC-YFQFCDNPAFIISGGAQTN-TAIYIN
C2 ------------NNSTNLIVRVC-NFELCKVPLFVVFKSNNSQLSHLFSD
C3 ------------NNSTNLIVRVC-NFELCKVPLFVVFKSNNSQLSHLFSD
C4 TLDKVVSFFVEGADAWDYASYRCANGYSCA--HQVVYTPVTLRITTVPEG
C5 TLDKVVSFFVEGADTWDYASYRCANGYSCA--HQVVYTPVTLRITTVPQG
C6 PGNLGSWPTVSKPTTIKVYIIVGSNATICAYPAFNRWGPAG---QFYADD
C7 GLNNTYRFYL--HNNWERATVRCHTKQSCA--FFPVENVTTLNITTNGEG
C8 G-SRSYRYYL--TNNWNRVDVKCVNYPTCI--INPVRNITTFNVTTNAQG
C9 GINGSYRYYI--PNDWFRVSVKCENKYVCA--IYPVYNQTTLNITTNAKG
C10 GISKSYRYFL--KNDWYRVTVKCLNKYACA--LYPVYNQTTLNITTNARG
C11 PDNLGSWNQVSYRNVTTVHLVVCSNATLCINPGFNRWGPAG---NIIASN
C12 AGNVGSWSSLVTQQQANITIVSCDNATLCANPFFLRWGPGVIR-SFTISN
C13 AGNIGSWTNTVTQTSANITIVSCDNATLCSNPLYLRWGPGGLP-GYVIKD
C14 PDGCGTVLHAFYCILQPRTQNRCPGNGGYK--AYFVYETIHNDCVPAINK
C15 ------------NNGSAITIEVC-YFQFCDNPAFIISGGAQTN-TAIYIN
C16 ------------NNSTHIIIRVC-YFNLCKDPMYTVSAGTQVS-SWVYQS
C17 PSKCGTVFQVAYCLLQPRTDSYCPGNANYV--SYALIDSPT-DCTSADES
C18 PESCGTSLTVFYCILEPRNGTRCPNHQDYT--SYVIWETPHLDCGSSVNR
C1 LRN--CTYVDTLRDLPL-SFAEVDGGFKHLREFVFKNSDGFLHIYGAYQ-
C2 SFN--CTFEYVSRAFSL-DIREQSGNFVDLREFVFRNRNGFLHIYEGYE-
C3 SFN--CTFEYVSRAFSL-DIREQSGNFVDLREFVFRNRNGFLHIYEGYE-
C4 IRS-YDLCTNCSGFPEH-VFAVLDGGEIPP-NFDFTN---WFYLTNASS-
C5 IRS-YDLCTNCSGFPEH-VFAVLDGGEIPP-NFDFTN---WFYLTNASS-
C6 AFV--NHGDSCFVNNTF-EIPLNTSRI----NLAFRFNDGNLLLYHSRW-
C7 LIESYDVCADCGGFPVH-VFPVLEHGYIPN-DFSFSN---WFMLSNTST-
C8 LFQSYTVCDDCNGFPQH-VFAVLDGGYIPS-EFGLDN---WYVLSNTST-
C9 LIKEYSVCESCNGFPAH-VFPVLEGGKIPA-DFDFTN---WFYLSNTST-
C10 LIQSYSVCDSCNGFPAH-VFPVLEGGKIPA-DFDFTN---WFYLTNSST-
C11 ALV--DHSNSCFVNNSF-NVSISTSRI----NLAFLFKDGDLLIYHSNW-
C12 AFQ--CHGNYTFYDTKLVNFTVSTARY----NLAFTFADGDIFMY--YA-
C13 AFH--CHGDYTFYDSKIINFSVDSSRY----NFAFSFADGDIFMY--YA-
C14 --N------ASLNSFKT-FFDLVNCTFFDSWDITADEVKEWFGITQDTQG
C15 LRN--CTYVDTLRDLPL-SFEDVDGGFKHLREFVFKNSDGFLHIYGAYQ-
C16 AFN--CTYDRVKKSFQL-DTSPKTGNFTDLREFVFKNRDGFFTVYQTYT-
C17 KRR------NGLEDIKK-YFNLVNCTYFEEFNVTADERAEWFGITQDSQG
C18 --N------ATLNSFKV-SFNLRQCKFMRTYNISDDENQEWFGITQNAQG
:. :
C1 --PHDLDIGAPAALPAQFLPLKPLWKLPLGLNITNYKVV----TTLKP--
C2 --AISIVRGLPAGFNV----LKPLLKIPFGLNVTSFKTF----LTVYR--
C3 --AISIVRGLPAGFNV----LKPLLKIPFGLNVTSFKTF----LTVYR--
C4 --PVSGRVVGVQPLQ-----LLCLWPIPALLGTATDITFDRNGTSDVRCN
C5 --PVSGRVVGVQPLQ-----LLCLWPIPALLGTATDITFDRNGTSDVRCN
C6 --LPTSGLNLLEDTP-----LHFYMSVGVGANLPNAQFF----QSLSR--
C7 --FLQGKLVSTQPLK-----LMCLWPVPSLLANDEKIFFN---ASGATCN
C8 --VLDGRVLTNQPLL-----VACLWPVPSLLSNDNPIHFNMSLNTGVNCN
C9 --LVAGRVVGIQPLR-----LLCLWPVPSTTANDDKIYFN---TTGANCN
C10 --LVAGRVVGIQPLK-----LLCLWPVPSITANDDKIYFN---TTGANCN
C11 --LPKGSFDFNQSFP-----LQYFMTLPVGGNLPRAQFF----QSIVRQG
C12 --ALGDSLNLPTAYP-----LQPYLRIPAGFKPDVVQFF----QAITRP-
C13 --PLGDSQNVAKAFP-----LQPYLRIPAGFKPKRAQFF----QAIIRK-
C14 VHLYSSRKGDLYGGN-----MFRFATLPV---YDAIKYY----TVIPR--
C15 --PYDLAIGATAALPAQFLPLKPLWKLPLGLNITNYKVV----TTLKP--
C16 --PVNLLRGLPSGLSV----LKPILKLPFGINITSFRVV----MAMFS--
C17 VHLYTSRKNGFNSNN-----LFLFASVPI---YDKINYY----TVIPR--
C18 VHLYSSRKGDLYGGN-----MFLFDTLPV---YETLKYY----TVIPR--
: :
C1 --------TNQAFQAAYIVGNLKHTTMMLSFNENG-----TMSNAID---
C2 ----VAAGSISVASSAYFVGYLKPLTFMLSYDLNG-----TINNAVD---
C3 ----VAAGSISVASSAYFVGYLKPLTFMLSYDLNG-----TINNAVD---
C4 GFSSNATADAMRFSLNFTENGVFAKEGVITLKTVSNTFKFSCSNSSTYTS
C5 GFSSNATADAMRFSLNFTENGVFAKEGVITLKTVSNTFKFSCSNSSTYTR
C6 SLDGSGDGKCFSAQNNLYIAPIVQRELLVAYSDAG-----IPTKVAD---
C7 GYQFDGVADAIRFSLNFSSDQVFNGVNNIVFDVEGGTFEFFCTNDTSVNP
C8 GYSEVREVSHLRFALNFTNQQVLNGVHNIDLLGDTFNFTFTCTNNSDITK
C9 GFVGEGVADALRFSLNFTSNQVLNGVHNIILESTSSKFTFTCRNDSESTF
C10 GFVGEGVADALRFSLNFTANQILNGVHNIILEGTEAKFTFTCRNDSESTL
C11 GTNNGADDRCVDFNISLHIAHLVNRDLLVSYFNNG-----SVANAAD---
C12 -NGESAEVACASSTVSWYVSRLYYKELLVGYDSYS-----SIVNVSF---
C13 -TAEDAEFQCSRYTTSWYVSYLKYHELLVGYDANS-----IISNVST---
C14 --SFRAKANRRESWAAFYVYKLHQLTYLLDFSVDG-----YIRRTID---
C15 --------TNQAFQAAYIVGNLKHTTMMLSFNENG-----TMSNAID---
C16 ----KTTSNYVPESAAYYVGNLKQSTFMLSFNQNG-----TIVDAVD---
C17 --SIITPANQRSAWAAFYVYPLHQLSYLLNFDVNG-----YITQAAD---
C18 --SLRSRLNERQAWAAFYVYSLHKLTYLLDFSVDG-----YVRRAID---
: :
C1 ----CSQDPLAELKCTLKQF---DVGKGIYQTSNFRVQPTVDVARFPNIT
C2 ----CSQDPLAELKCTIKNF---NVSKGIYQTSNFRVSPTREVVRFPNIT
C3 ----CSQDPLAELKCTIKNF---NVSKGIYQTSNFRVSPTREVVRFPNIT
C4 PY-VIPFGHIDQPYYCFTTFYINETTGTTATSFVGMLPPIVREFVITRLG
C5 PY-VIPFGHIDQPYYCFTTFFTNETTGATATSFVGMLPPIVREFVITRLG
C6 ----CSLNAGEELFCVTGTF---DPPTGVYPLSRYRAQLS-GSVHITQQL
C7 TYRYVPFGQLTEIYRCFVET---TAENGTHTTFVGILPPVVREIVVSRLG
C8 GERFVPFGFLDNVYRCFVYF---DVGNGTVNKFVGILPPVVKEIVISKFG
C9 YR--VPFGETGQVYYCFIFT---EAGNQSYNTFVGILPPVLKEIVISRYG
C10 FR--VPFGVTGQVYYCFVFT---ESRNQSYNTFVGILPPILKEIVISRYG
C11 ----CAESASEELYCVTGSF---QPPTGVYPLSRYRAQVD-GFVRVTQRG
C12 ----CSSDAESELQCLLGTF---APANGVYSLSNFRSSPT-DNVRITNSA
C13 ----CSFDAESELQCLLGTF---TPANGVYSLSNFRSSPV-DTVRITNSA
C14 ----CGHDDLSQLHCSYTSF---EVDTGVYSVSSYEASAT-GTFIEQPNA
C15 ----CSQDPLAELKCTLKQF---DVGKGIYQTSNFRVQPTVDVARFPNIT
C16 ----CSQDPLAELKCTTKSF---NVSKGIYQTSNFRVSPVTEVVRFPNIT
C17 ----CGYNDYTQLVCSYGDF---NMKSGVYSTSYYSAKPV-GAYYEAHVY
C18 ----CGYDDVAQLFCSYESF---DVDSGVYSVSSFEAQPR-GYFVEQPHS
. :
C1 NVC--PFDKVFNATRFPSVYAWERTKISD-----------------CVAD
C2 NRC--PFDSIFNASRFPSVYAWERTKISD-----------------CVAD
C3 NRC--PFDSIFNASRFPSVYAWERTKISD-----------------CVAD
C4 DVYLNGYRIFSVGEVVSVNFNISSTDHRDFWTVAFVKDAEVMLDIEDTYI
C5 DVYLNGYRIFSVGEVVSVNFNISSTDHRDFWTVAFVKNAEVMLDIEDTYI
C6 SHCALPYKDILDPPQ-PVV--WKRYTVAN-----------------CSFD
C7 AIYINGYRLISLPVIESIVFNVTSKVGSDFWTVAFAQDVEVLLELNATNI
C8 TVYINGVNMATLPPVNSVIFNVTSTVGSDFWTVGFTDLADVMIDINATRI
C9 SIYLNGVKLFSLPTLESVIFNVSSNVGSDFWTIAYAQDAQVMVDLNATSI
C10 SIYLNGVKLFSLPVLQSVIFNVSSKVGSDFWTVAYAQDAQVMVDLNATSI
C11 DYCQPPYADLLEPPQ-PVV--WRRFMLYN-----------------CAFD
C12 SSCSVPYSVLSRPPL-PFV--WKRYAISN-----------------CKFD
C13 KACSVPYNLLETPPL-PFV--WKRHSISN-----------------CKFD
C14 TEC--DFSPMLKGVA-PQVYNFKRLVFSN-----------------CNYN
C15 NVC--PFDKVFNATRFPSVYAWERTKISD-----------------CVAD
C16 NLC--PFDKVFNATRFPSVYAWERTKISD-----------------CVAD
C17 PDC--NFTDLFRENA-PTIMQYKRQVFTR-----------------CNYN
C18 SEC--DFSAMFSSQP-PQVYNFSRLVFTN-----------------CNYN
.
C1 YTVFYNSTSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
C2 YTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
C3 YTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
C4 KQLLYCNNPVNVVKCQQLK-FVLEDGFYSYVPASEDSLPRTIVRLPRFMT
C5 KQLLYCNNPVNVVKCQQLK-FVLEDGFYSYAPQSEDSLPRTIVRLPRFMT
C6 FDVIVNNLPTYELKCYGVAPTRLAQMCYSGVTLDVMRINST------HFT
C7 VDILYCESPINKLKCQQLT-FSLDDGFYPASSAYTEYTPRSYVALPYHAT
C8 VDLLYCDTPINKLKCQQLS-FSLDDGFYTTTNVYKQAVPRTYVALPYHAT
C9 TDLLYCDTPLNRLKCQQLS-YALEDGFYPTTNIYTKDIPRSYVALPYHAT
C10 TDLLYCDTPLNRLKCQQLS-YALEDGFYPTTNIYTRDIPRSYVALPYHAT
C11 FSVVIDNLPTHQLQCYGISPKRLASMCYSSVTIDVMRINAT------HLN
C12 FQALLSHLPTFQLRCFGISPTKLATMCFGTVTLDIMLVNVT------HYN
C13 FQALLSHLPSFQLRCYGISPTKLSSMCFGTVSLDVMLVNVT------HYN
C14 LTKLLSLFAVDEFSCNGISPDAIARGCYSTLTVDYFAYPLS------MKS
C15 YTVFYNSTSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
C16 YTVFYNSTSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
C17 LTLLLSLVQVDEFVCDKITPEALATGCYSSLTVDWFAFPYA------WKS
C18 LTRLLSLFQVSEFSCHQVSPSALASGCYSSLTVDYFAYPLS------MAS
. . * : : : :
C1 QVAPGQTGVIADY-----------------------NYKLPDD---FIG-
C2 QVAPGETGVIADY-----------------------NYRLPDD---FTG-
C3 QVAPGETGVIADY-----------------------NYRLPDD---FTG-
C4 HNFINVSVVVSFYFDDGKHDTPVGSDFYECATCAPKYYHVRFTDYWLDG-
C5 HQHINISVVVSFYFDDGQADTPVGSDFYACATCAPKYYKMVFADVDWTGI
C6 NMLGNVPDVFSMY-----------------------NYVLPTD---FYG-
C7 HTEVVLGVHLSLY-----------------------TKHSATL---NGG-
C8 HSAINITAEVSVN-----------------------SNDDRFL---INGL
C9 HAVLNITAYIGD------------------------KKDDRIQ---INGF
C10 HMVLNITAYIGD------------------------KKDDRIQ---INGF
C11 NLLNRVPDSFSLY-----------------------NYAVPDN---FYG-
C12 NLLNDVPDDFSLY-----------------------NYQLPRN---FYG-
C13 NLLNDVPDDFSLY-----------------------NYQLPRN---FYG-
C14 YIRPGSAGNIPLY-----------------------NYKQSFA---NPT-
C15 QVAPGQTGVIADY-----------------------NYKLPDD---FIG-
C16 QVAPGQTGVIADY-----------------------NYKLPDD---FTG-
C17 YLAIGSADRIVRF-----------------------NYNQDYS---NPS-
C18 YLRQGSTGPIAQF-----------------------NYKQDFT---NPT-
.
C1 ----------CVIAWNTAKQ------DVGSYFYRSHRSSKLK-----PFE
C2 ----------CVIAWNTANQ------DVGSYFYRSHRSTKLK-----PFE
C3 ----------CVIAWNTANQ------DVGSYFYRSHRSTKLK-----PFE
C4 ----SNHTNVCVNTASFTTRLFTDYFGT-SGAVRIEIEPGTC-----PFG
C5 HGDILNVTGVCVNAASFTTKFRSSYLGADGVYVG--LEAGSC-----PFS
C6 ----------CVHAYYINST-NKRYTVAYQRGYSKVITPGGR-----QPY
C7 ------NDTICVNTTQFTTVLNAS---VYTG-ARGDVVNVNC-----PFT
C8 ------NGTFCVNTTQFTV--ITHFTQYTG--MRVAIENLDC-----PFT
C9 ------NDSFCVNTTQFTTN----FVQTDSGIIKAELKNGDC-----PFT
C10 ------NDSFCVNTTQFTTN----FVQTDSGIIKAELKNGDC-----PFT
C11 ----------CLHAFYLNST-T-----AYAVANRFPIKPGGR-----QSN
C12 ----------CLHSYYLPND-T-----AFSYTVASRIRYPSW-----VHS
C13 ----------CLHSYYLPNS-T-----TFNYIVASRSQSPSW-----VYN
C14 ----------CRVMASVPANVTITKPEAYGYISKCSRLTGDYQHIETPLY
C15 ----------CVIAWNTAKQ------DVGSYFYRSHRSSKLK-----PFE
C16 ----------CVIAWNTAKQ------DVGSYFYRSHRSSKLK-----PFE
C17 ----------CRIHSKVNSSVGISYSGLYSYITNCNYGGFNKDDVVKPGG
C18 ----------CRILAAVPSNVTIPLPQSYMWLTQCYTNSPSN-----SHY
*
C1 RDLSSEENGVLTLST----YDFNQNVPL---------E-YQATRVV----
C2 RDLSSDENGVRTLST----YDFNPYVPL---------D-YQATRVV----
C3 RDLSSDENGVRTLST----YDFNPYVPL---------D-YQATRVV----
C4 FD---TLNNYLAFGS----LCFSTV-P----------NGGCTMNIVTQGP
C5 FD---TLNNYLTFGS----LCFSTV-P----------NGGCTMNVVSKGP
C6 ND---YVRTLLNTPNE---IC------T---------R-ANCFGLV----
C7 WA---SLNDYLSFGT----ICFSFE-PL---------PGGCTMSIN-VVN
C8 LD---SLNNFLSFGS----ICFSTY-AV---------GGGCRMRLD-KVL
C9 FD---SINNYLTFDS----ICFSIE-PI---------GGGCTMNIV-RTW
C10 FD---SINNYLTFDS----ICFSIE-PI---------GGGCTMNIV-RTW
C11 RD---YIATVLNAAH----YT------T---------F-SYIFGLA----
C12 ITPGGRQPVGPFLDS----LQSSSK-PC---------T-GSCLGLA----
C13 ISPGGRQPPSSFLNT----LPGSAK-PC---------Q-GSCLGLA----
C14 INPG-EYSICRDFAP----WGFSEDGQVFKRTLTQFEGGGLLVGVGTRVP
C15 RDLSSEENGVLTLST----YDFNQNVPL---------E-YQATRVV----
C16 RDLSSEENGVRTLST----YDFNQYVPL---------E-YQATRVV----
C17 RASQPCVTGALNSPTNGQVWSFNFGGVP-----------YRTSRLTYTDH
C18 VEAG-SYTPCLGLAS----RGFNTFNSM---------HYDPATGLTATGS
:
C1 -------------VLSFELLNAPATVC---------GPKLSTPLVK--NQ
C2 -------------VLSFELLNAPATVC---------GPKLSTELVK--NQ
C3 -------------VLSFELLNAPATVC---------GPKLSTELVK--NQ
C4 YGQ----PHTFA-VLYVSYTDGDNIIGVPPSNIPAYGVADMSQVYL--DT
C5 YGE----PHTFA-VLYVSYTDGDNVIGVPPYNIPPYGVSDMSIVYF--DV
C6 -------------VISLNPASGSHLVC---------PTNNDTDVVE--NQ
C7 LGY----YTPFA-TLYVGYTRGHGITG---VSQKVGGIFDPSFITL--DT
C8 IST----PTPWR-ILNIVYTDGDRTTG---VTKASGGIFDPSELYV--GV
C9 FGQ----SVPWR-TLYVSYTKGSRITG---VKTPNTGVFDPSTFVE--DV
C10 FGQ----SVPWR-TLYVSYTKGSRITG---VKTPNTGVFDPSTFVE--DV
C11 -------------VITLKPASGNKLVC---------PIANDTDIIT--ER
C12 -------------VISLSIASANKLVC---------PVGNDTDIVP--DT
C13 -------------VISLSVASANKLVC---------PVGNDTDIVT--GN
C14 MTA----NLEMGFVISVQYGTDTNSVC------PMLDLGESSTITNRLGK
C15 -------------VLSFELLNAPATVC---------GPKLSTPLVK--NQ
C16 -------------VLSFELLNAPATVC---------GPKLSTSLVK--NQ
C17 LKN----PLDMVYVITVKYEPGAETVC-----PKQVRPDYSTNITGLLGS
C18 YQYISEEALEMAFIISVQYGTDSNSVC------PLQAVHNDTKVDDKLGR
: . : .
C1 CVNFNFNGLKGTGVLTD-SSKTFQSFQQFGRDASDFTDSVRDPQTLQILD
C2 CVNFNFNGLKGTGVLSS-SSKRFQSFQQFGRDASDFTDSVRDPQTLEILD
C3 CVNFNFNGLKGTGVLSS-SSKRFQSFQQFGRDASDFTDSVRDPQTLEILD
C4 CTTYTIYGMTGRGIITR-SNNTFITG-LYYTSNAGNLLAYKNSTTGIVYN
C5 CTTYTIYGMTGRGIITP-SNNTFITG-LYYTSLAGDLLAYKNSTNGIVYN
C6 CVKYNFYGYSGNGVLTK-SNLTIPDNKLFVASNTGSIIAVK--AQDTVYS
C7 CTEYTVYGITGKGVITS-LNKTIVAG-LYYTSTSGQLLGFKNSTTGEVFA
C8 CTDYTIYGISGRGIINQ-LNTTIIAG-LYYTSPAGQLLGFKNATTGDIYG
C9 CTDYTIYGMSGRGVISR-SNASYIAG-LYYTAISGQLLGFKNATTGETFV
C10 CTDYTIYGMSGRGVISR-SNASYIAG-LYYTAISGQLLGFKNATTGETFV
C11 CVQYSLYGYTGTGVLSKNTSLTVPNGKVFTASSTGAIIGVF--INGTMYS
C12 CVNYNIYGYQGTGVISR-SNYTLPSSKVFSLSSSGELTVFA--VGSSFYQ
C13 CVNYNIYGYQGTGVITT-SNYTLPSTKVFSLSASGELTVFS--VGSSFYQ
C14 CVDYSLYGVTGRGVFQN-CSAVGVKQQRFVYDSFDNLVGYY-SDDGNYYC
C15 CVNFNFNGLKGTGVLTD-SSKTFQSFQQFGRDASDFTDSVRDPQTLQILD
C16 CVNFNFNGFKGTGVLTD-SSKTFQSFQQFGRDASDFTDSVRDPQTLRILD
C17 CISYDIYGITGTGVFQL-CNATGIPQQKFVYDKFDNIIGFH-SDDGNYYC
C18 CIEYSLYGVTGRGVFQN-CTPVGLKQQRFVYDGFDNLVGYH-SDNGNYYC
* : . * * *:: . : .
C1 ISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTIHADHLTHSWRVY
C2 ITPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVY
C3 ITPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVY
C4 IYPCQLAGQVAVI--SDN------IVGMASSTPNVSLDFNVTVVADSFYY
C5 VYPCQLSGQVAVI--SDN------IVGMASSTPNVSLDFNVTVVADSFYY
C6 ISPCVSVPVSVGY--DPNYEQ-ALLFNGLECNQRAVAVSIPASAY-WLRT
C7 VRPCDLASQVAVY--QND------IIGAMTASRNSSFGFANVSELSNFYY
C8 VRPCALSSQAAVY--QNE------IIGVMTASANESFGFQNVTETPKFFY
C9 VVPCDLSSQAAVI--GDK------VVGVMTSITNSSFEFVKSIETPNFYY
C10 VVPCDLSSQAAVI--GDK------VVGVMTSITNSSFEFVKSIETPNFYY
C11 ITPCVTVPVSVGY--HANFER-VLLFNGLSCSQRSRAVSRPASTL-WNFS
C12 LSPCAFAPISAAF--YKGYTT-SLLFNNLPCSNRHRAVVEPVSAY-WRRS
C13 LSPCAFAPISAAF--YKGYTT-SLLFNNLPCSGRSRAVVEPVSDY-WRAS
C14 VRPCVSVPVSVIY--DKDTNLHATLFGSVACEHVTTMMSQFSRLTQSNLR
C15 ISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTIHADHLTHSWRVY
C16 ISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTLHADQLAPSWRVY
C17 VAPCVSVPVSVIY--DDNTNQYATLFGSVACQHISTMAAQFSRETRASLV
C18 VRPCVSVPVSVIY--DKATNNHATLFGSVACEHVDTMMSQFSRMTQSRLR
: ** . : .
C1 TTGPHV---FQTQAGCLIGAEHVN--VSYQCDIPI----GAGICASYHTA
C2 STGVNV---FQTQAGCLIGAEHVN--ASYECDIPI----GAGICASYHTA
C3 STGVNV---FQTQAGCLIGAEHVN--ASYECDIPI----GAGICASYHTA
C4 LSNSAE-----------------------PCDQPVLTYAGIGICADGSIT
C5 LSNSAE-----------------------PCDQPVLTYAGIGICADGSIT
C6 VSDNQTAGVFDTPSGCVYNVINRTDITVNACDMPI----GNSLCLINATS
C7 HSNGHL-----------------------GCEEPVLIYGKMGICSDGSLT
C8 HSNGNS-----------------------TCTEPVLTYGSVGVCPDGTLI
C9 LTNATA-----------------------NCTSPVITYGKLGVCEDGSIA
C10 LTNATA-----------------------NCTSPVITYGKLGVCEDGSIA
C11 VSDESA---IDTLSGCVVNAILHNDTTVSTCSMPL----GNSLCLINDTT
C12 VADNNT---FDTTAGCIFNAYNLTSIVVNQCDLPI----GDSYCLQPSLI
C13 VVNNST---FDTSAGCIFNAINSTSIVVNQCDLPI----GDSYCLQPSTI
C14 RRDSNA--PLQTAVGCVVGLSNNSL-VVSDCRLPL----GQSLCAVPPVT
C15 TTGPYV---FQTQAGCLIGAEHVN--ASYQCDIPI----GAGICASYHTA
C16 TTGPYV---FQTQAGCLIGAEHVN--ASYQCDIPI----GAGICASYHTA
C17 SRNMQN--LLQTSVGCVMGFHETND-TVEDCNLSL----GQSLCAIPPNT
C18 VRNIDDAGPMQTSVGCVVGLVNTSL-IVDNCQLPL----GQSLCAVPATT
. * .: . *
C1 SLLRSTGQ------KSIVAYTMSLGAENSVAYANNS-IAIPTNFSISVTT
C2 STLRSVGQ------KSIVAYTMSLGAENSIAYANNS-IAIPTNFSISVTT
C3 STLRSVGQ------KSIVAYTMSLGAENSIAYANNS-IAIPTNFSISVTT
C4 NNTARRAA-----------------SDPISPVISGN-ISVPTNFTFSVQV
C5 NNTARRAA-----------------SDPISPVISGN-ISVPTNFTFSVQV
C6 TQARATSGDDTKSYLSLVNYDPTY-TSLTKVLTPVYWVSIPTNFTLAAGT
C7 EVNNKDAE-----------------QQPVSPIATAN-VTVPVNFTVSVQV
C8 MVQTRSGN-----------------VNPVSPIVSGN-ITIPLNFTVSVQV
C9 EVKVNTHV-----------------QTPVSPISTGN-ITVPSNFTVSVQV
C10 EVKVNTHV-----------------QTPVSPISTGN-ITVPSNFTVSVQV
C11 VAIAHAVG---LPKLYLVNYDPLYDNNSATPITPVYWVKIPTNFTLTATD
C12 KGFEATLS--------LVTYNPL--ADSLTPITPVYQVSVPTNFTLVAST
C13 SRQGSTLL--------LVTYDPL--SDTLTPITPVYEISVPTNFTLVAST
C14 SFRRRSAS---EFQLAVLNYTSPIVVTPIN--SSGFTAAIPTNFSFSVTQ
C15 SLLRSTGQ------KSIVAYTMSLGAENSVAYANNS-IAIPTNFSISVTT
C16 SLLWSTGQ------KSIVAYTMSLGAENSVAYANNS-IAIPTNFSISVTT
C17 NLRVGRST----FGLGSLAYNSPLRVDALN--SSEFKVSLPLNFTFGVTQ
C18 IRAATGTT--SSLQLATINFTEPHMLTPIN--SSRFIVEIPTNFSFGVTQ
:* **:. .
C1 EVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQ
C2 EVMPVSMAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGVALEQ
C3 EVMPVSMAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGVALEQ
C4 EYIQLMLKPVTVDCSVYVCNGNPRCLQLLAQYASACRTIEQALQ-LSARL
C5 EYIQLMLKPVTVDCSVYVCNGNPRCLQLLAQYASACRTIEQALQ-LSARL
C6 EYIQTTSPKINIDCAKYLCGDSDKCLTVLLQYGTFCDDVNKALAEVSSVI
C7 EYLQMYMQPVSVDCNTYVCSGNVHCLRLLTQYASACRNIESSLQ-LSARL
C8 EYLQMYLQPVSVDCNMYVCGGNPHCLRLMSQYASACRTIEESLQ-LGARL
C9 EYLQMYMRPVSVDCAMYVCNGNPHCLRLLTQYASACRTIEDALQ-LSARL
C10 EYLQMYMRPVSVDCAMYVCNGNPHCLRLLTQYASACRTIEDALQ-LSARL
C11 EFIQTNAPKVTIDCARYLCGDSSRCLNILLHYGTFCDDINKALAKVNTIL
C12 EYIQTYASKISIDCAKYLCGDSSQCRTVLLQYGTFCNDVNVALTRVFTLL
C13 EYIQTYASKISIDCAKYLCGDSSQCRTVLLQYGTFCNDVNVALTRVFTLL
C14 EYVETSIQKVTVDCKQYVCNGFSRCEKLLVEYGQFCSKINQALHGANLRQ
C15 EVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQ
C16 EVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQ
C17 EYIETSIQKITVDCKQYVCNGFAKCEKLLEQYGQFCSKINQALHGANLRQ
C18 EFIQTTIQKVTVDCKQYVCNGFEKCEQLLREYGQFCAKINQALHGANLRQ
* : .:** *:*.. .* :: .*. * :: :*
C1 DKNTQEVFAQVKQMYKTP-TIRDFGG-FNFSQIL----PDPLKPTKRSFI
C2 DKNTQEVFAQVKQMYKTP-AIKDFGG-FNFSQIL----PDPSKPTKRSFI
C3 DKNTQEVFAQVKQMYKTP-AIKDFGG-FNFSQIL----PDPSKPTKRSFI
C4 ESVEVNSMISISQQALDLGVIDNFNHDFNLTNVL------PASVGGRSAV
C5 ESVEVNSMISISQQALDLGVIDNFNHDFNLTNVL------PANVGGRSAV
C6 DSTMVSLVSELTADVVRS-ENTAFDTTYNFTSLMGCLGSSCNTRNYRSAL
C7 ESLEVNSAITVSERAASLANITNFEN-YNLSVLL------P-NLNGRSAM
C8 ESTEVANTISVSSQAVQLANITNFDS-YNVSVLL------P-RANGRSFI
C9 ESIEVNSVISVSEDALELANISNFDH-YNMSALL------P-KKNGRSFI
C10 ESIEVNSVISVSEDALELANISNFDH-YNMSALL------P-KKNGRSFI
C11 DSALLSLSKELSINTRDEIQSFAFGGDYNFTGLMGCLGPNCGATTYRSAL
C12 DNSLVDTFSSLKSTAPVQ---LAYTGDFNFTSLVGCIGTDCDSKSHRSAL
C13 DNSLVDTFSSLKSTAPAQ---LAYTGDFNFTSLVGCVGTDCDSKSYRSAL
C14 DESVYSLYSNIKTTSTQT-LEYGLNGDFNLT-LLQVPQIGGSSSGYRSAI
C15 DKNTQEVFAQVKQMYKTP-TIRDFGG-FNFSQIL----PDPLKPTKRSFI
C16 DKNTQEVFAQVKQMYKTP-TIRDFGG-FNFSQIL----PDPLKPTKRSFI
C17 DDFVRNLFESVKTPQTVP-LTTGFGGEFNLT-LLEPLSVSTGSSNARSAL
C18 DESVSNLFSNIKTQATQP-LDAGLTGDFNLT-LLQVPKVVTSQYSYRSAI
:. :. :*.: :: ** :
C1 EDLLYNKVTLADAGFMKQ-YADCL---GGINARDLICAQKFNGLTVLPPL
C2 EDLLFNKVTLADAGFMKQ-YGECL---GDISARDLICAQKFNGLTVLPPL
C3 EDLLFNKVTLADAGFMKQ-YGECL---GDISARDLICAQKFNGLTVLPPL
C4 EDLLFDKVVTSGLGTVDADYKECAS-RTANTVAEVGCVQYYNGIMVLPGV
C5 EDLLFDKVVTSGLGTVDADYKECAS-RTANWVAEVGCVQYYNGIMVLPGV
C6 SDLLYNKVKVADPGFMSS-YQKCIDSQWGGSVRDLICTQNFNGISVLPPI
C7 EDLLFNKVVTNGLGTVDQDYKQCIKDKGVGDVADVACAQYYNGVMVLPGV
C8 EDLLFDKVVTSGLGTVDQDYKQCVNEWGIGEVADLSCAQYYNGIMVLPGV
C9 EDLLFNKVVTNGLGTVDQDYKKCMKDKGFGEASDIACVQYYNGIMVLPGV
C10 EDLLFNKVVTNGLGTVDQDYKKCMKDKGFGEASDIACVQYYNGIMVLPGV
C11 SDLLYDKVKITDPGFMQS-YQKCIDSQWGGSVRDLLCTQTYNGIAVLPPI
C12 SDLLFSKVSVADPGFMQS-YQQCLDAQWGGNIRDLLCTQTFNGISVLPPI
C13 SDLLFNKVSVADPGFMQS-YQKCLDSQWGGNIRDLLCTQTFNGISVLPPI
C14 EDLLFDKVTIADPGYMQG-YDDCMK-QGPQSARDLICAQYVSGYKVLPPL
C15 EDLLYNKVTLADAGFMKQ-YADCL---GGINARDLICAQKFNGLTVLPPL
C16 EDLLYNKVTLADAGFMKQ-YADCL---GGINARDLICAQKFNGLTVLPPL
C17 EELLFDKVTIADPGYMQG-YDDCMQ-QGPASARDLICAQYVAGYKVLPPL
C18 EDLLFNKVTIADPGYMQG-YDECMK-QGPPSARDLICAQFVAGYKVLPPL
.:**:.** . * :. * .* :: *.* * *** :
C1 LTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
C2 LTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
C3 LTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
C4 VDQSLLAQYSAALTGAMVLGGITAAAA----VPFSIAVQSRLNYLALQTD
C5 VDQSLLAQYSAALTGAMVLGGITAAAA----VPFSIAVQSRLNYLALQTD
C6 VSPAMQSLYTSLLVGAVASAGYTFGITSVGVIPFATQLQFRLNGLGVTTQ
C7 VDDTKMSLYTASLVGGMVLAGFTAGAA----IPFSLAVQARLNYVALQTD
C8 VDANMMTLYTASLTGAMVFGGITASAS----IPFSLAVQSRLNYVALQTD
C9 VDDSKMALYTAALTGGMLLAAFTAGAS----IPFSLAVQSRLNYVALQTD
C10 VDDSKMALYTAALTGGMLLAAFTAGAS----IPFSLAVQSRLNYVALQTD
C11 VSPAMQALYTSLLVGAVASSGYTFGITSAGVIPFATQLQFRLNGIGVTTQ
C12 VSPSMQALYTTALVGGIAASGFTFGVSSAAVIPFATQLQFRLNGLGVTTN
C13 VSPSMQALYTTALVGGIAASGFTFGVSSAAVIPFATQLQFRLNGLGVTTN
C14 YDPNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSMFYRLNGVGITQQ
C15 LTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
C16 LTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
C17 MDVNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSIFYRLNGVGITQQ
C18 YDPNMESMYTTSLTGAILGAAWTAGASSFAAIPFAQSVFYRMNGIGITQQ
: *:: * .. .. * . :**: : *:* :.: :
C1 VLYENQKQIANQFNKAITQIQESLT--------------TTATALGKLQD
C2 VLYENQKQIANQFNKAISQIQESLT--------------TTSTALGKLQD
C3 VLYENQKQIANQFNKAISQIQESLT--------------TTSTALGKLQD
C4 VLQRNQQQLANSFNAAMGNITEAFGRVNDAIEQTSHAISTVAQALDKVQN
C5 VLQRNQQQLANSFNAAMGNITDAFGRVNDAIEQTSHAVSTVAQALNKVQT
C6 VLVQNQQLIANSFNNALTNIQKGFD--------------ATNLALSQMQS
C7 VLQRNQQILAESFNSALSNITEAFTEVNEAIKNTADAINTVATALGKVQS
C8 VLNRNQEILAQSFNSALGNITAAFSEVNHAFQETSDAINTVAQALGKVQT
C9 VLQKNQQILATSFNNAMSNITVAFTEVNQAIKETSDAINTVAKALGKVQS
C10 VLQKNQQILATSFNNAMSNITVAFTEVNQAIKETSDAINTVAKALGKVQS
C11 VLVENQKLIASSFNNALVNIQKGFT--------------ETSIALSKMQD
C12 VLMENQQLIANAFNKALVSIQEGFT--------------ATNQALNKIQT
C13 VLMENQQLIANAFNKALVSIQEGFT--------------ATNQALNKIQT
C14 VLSENQKLIANKFNQALGAMQTGFT--------------TSNQAFSKVQD
C15 VLYENQKQIANQFNKAITQIQESLT--------------TTATALGKLQD
C16 VLYENQKQIANQFNKAITQIQESLT--------------TTSTALGKLQD
C17 VLSENQKIIANKFNQALGAMQTGFT--------------TTNEAFQKVQD
C18 VLSENQKQIANKFNQALGAMQTGFT--------------TTNLAFAKVQE
** .**: :* ** *: : .: *: ::*
C1 VVNQNAQALNTLVKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGR
C2 VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGR
C3 VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGR
C4 VVNDQGMALSQLTKQLASNFQAISSSIEDLYNRLDRVEADQQVDRLITGR
C5 VVNDQGMALSQLTKQLASNFQAISSSIEDLYNRLDRVEADQQVDRLITGR
C6 VINQHAQQLQTLVNQLGNSFGAISSSINEIFSRLDGLEANAQVDRIINGR
C7 VVNQQGEALAQLTKQLSSNFQAISSSIEDIYLRLDKLAADAQVDRLISGR
C8 VVNEQGQALSQLTRQLASNFQAISNSIEDIYNRLDGLTADAQVDRLITGR
C9 VVNEQGQALSQLTRQLASNFQAISSSIEDIYNRLDSLAADAQVDRLITGR
C10 VVNEQGQALSQLTRQLASNFQAISSSIEDIYNRLDSLAADAQVDRLITGR
C11 VINQHAAQLQTLVTQLGNSFGAISSSINEIFSRLEGLAANAEVDRLINGR
C12 VVNNNALQLQVLVQQLGNTFGAISASVNEIFSRLDLLEANAEVDRLISGR
C13 VVNNNALQLQVLVQQLGNTFGAISASVNEIFSRLDLLEANAEVDRLISGR
C14 AVNANAQALSKLASELSNTFGAISSSISDILARLDTVEQDAQIDRLINGR
C15 VVNQNAQALNTLVKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGR
C16 VVNQNAQALNTLVKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGR
C17 AVNTNAQALAKLASELSNTFGAISSSIGDIIQRLDVLEQEVQIDRLINGR
C18 AVNANAQALSKLASELSNTFGAISSSISDILKRLDAVEQEAQIDRLINGR
.:* :. * *. :*...* *** : :: **: : : ::**:*.**
C1 LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM
C2 LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGRGYHLM
C3 LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGRGYHLM
C4 LAALNAFVAQQLTKYTDVRASRQLAQEKINECVKSQSFRYGFCGNGTHVF
C5 LAALNAFVAQQLTKYTDVRASRQLAQEKINECVKSQSFRYGFCGNGTHVF
C6 TVVLNTYVTQLLLKASEVRSQAALARQKISECVKAQSLRNDFCGNGTHVF
C7 LAGLNAFVTQTLTKYTEVRASRQLALQKVNECVKSQSSRYGFCGNGTHLF
C8 IGALNAFVAQTLTKYTEVRASRQLAIQKINECVKSQSARFGFCGNGTHLF
C9 LGALNAFVTQTLTRYTDARASRQLAIQKINECVKSQSMRYGFCGNGTHLF
C10 LGALNAFVTQTLTRYTDARASRQLAIQKINECVKSQSMRYGFCGNGTHLF
C11 MMVLNTYVTQLLLQASEAKAQNALAVQKISECVKAQSLRNDFCGNGTHVL
C12 MVVLNTYVTQLLIQASELRSQAELAKQKMSECVKSQSLRNDFCGNGTHVL
C13 MVVLNTYVTQLLIQASELRSQAELAKQKMSECVKAQSTRNDFCGNGTHVF
C14 LTSLNAFVSQQLVRSETAARSAQLASDKVNECVKSQSKRNGFCGSGTHIV
C15 LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM
C16 LQSLQTYVTQQLIRAAEIRTSANLAATKMSECVLGQSKRVDFCGKGYHLM
C17 LTTLNAFVAQQLVRSESAARSAQLAKDKVNECVKSQSTRSGFCGQGTHIV
C18 LTSLNAFVAQQLVRSETAARSSQLAVDKVNECVKSQSKRNGFCGSGNHIV
*:::*:* * : . ** *:.*** .** * .*** * *:.
C1 SFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHEGK---AYFPREGVFVS
C2 SFPQAAPHGVVFLHVTYVPSQEKNFTTAPAICHEGK---AYFPREGVFVS
C3 SFPQAAPHGVVFLHVTYVPSQEKNFTTAPAICHEGK---AYFPREGVFVS
C4 SVVNAAPDGMMFFHSVLLPTAYMEVAAFSGLCVEGK-GFVLREVGNVLFE
C5 SVVNAAPDGMMFFHSVLLPTAYMEVAAFSGLCVEGK-GFVLREVGNVLFE
C6 SVPQLAPNGVMFIHYTYQPTAYALVQTAAGLCYNGT---GYAPLSGMFVL
C7 SVVNAAPNGIMFFHTVLIPSSYTTVQAWAGVCVNGDVGLILRDVRNTLFY
C8 SIANAAPNGIMLFHTVLLPSEYTTVQAWAGICIDNNVGLILRDFKTTLFF
C9 SIANAAPNGVMLFHTVLIPTEFVTVEAWSGVCVDGTHGLILRDVRTTLFQ
C10 SIANAAPNGVMLFHTVLIPTEFVTVEAWSGVCVDGTHGLILRDVRTTLFQ
C11 SIPQLAPNGVLFIHYAYTPTDYALVQTSAGLCYNGT---GYAPLRGMFVL
C12 SIPQLAPNGMLFIHYSYQPTKYAQVYTTAGLCFNGT---GFVPRDGLFVR
C13 TIPQLAPNGMLFIHYSYQPTNYVQVYTTAGLCFNGT---GFVPRDGLFVR
C14 SFVANAPNGFYFFHVGYVPTNFTNVTAAYGLCNNNNPLLCIAPIDGYFIT
C15 SFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHEGK---AYFPREGVFVS
C16 SFPQSAPHGVVFLHVTYVPSQERNFTTAPAICHEGK---AYFPREGVFVS
C17 SFVINAPNGLYFMHVGYHPSQHIEVVAAYGLCDAANPTNCIAPVNGYFIK
C18 SFVSNAPNGLYFFHVGYVPTAHINATAAYGLCNTELPPRCIAPIDGYFVT
:. **.*. ::* *: : .:* :.
C1 NGS-------SWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP
C2 NGT-------SWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDP
C3 NGT-------SWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDP
C4 KDG-------RYFITARRMFEPRIPQTADFVQISGCDVVYLNVTRDELPT
C5 KDG-------SYLITARKMFEPRVPQTADFVQISGCDVVYLNVTRDELPT
C6 PND-TN----LWHYTKMNFYNPVNITFENTQVLDSCAVNYSYVNYSVIEP
C7 LDS-------KYYITTRDMYQPRTPVQSDFVRISNCSVSYVNITSEQLGD
C8 SD--------KYYVTPRDMFEPRTPVQADFVRIANCSVNYLNISSSELGT
C9 QGS-------TYYVTTRDMFEPRTPVAADFVRIANCSVTYVNITADSLGE
C10 QGS-------TYYVTTRDMFEPRTPVAADFVRIANCSVTYVNITADSLGE
C11 PNN-TN----MWHFTSMQFYNPVNISYSNTQILTSCSINYTSVNYSVLQP
C12 ENNESQ----VWYFTKASFYNPVNLSYENTHLLDTCGVNYTTVNNSVLNP
C13 ENNASQ----LWYFTKASFYNPVNLSYENTRLLDTCGVNYTTVNNTVLNP
C14 NQTTTYSIDTEWYYTGSSFFKPEPITQVNSRYVSS-DVKFEKLENNLPPP
C15 NGS-------SWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP
C16 NGS-------SWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP
C17 NQT-TRGVD-DWSYTGSSFYAPEPITTLNTRYVAP-QVTFQNISTNLPPP
C18 NSSATRDADPEWYYTGSAFYNPEPITLANTRYVSK-DTKYQELNNKLPPP
: * :: * : :
C1 LQPEL--DSFKQELDKYFKNHTSPDVDLGDISGINASVVDIQKEID----
C2 LQPEL--DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEID----
C3 LQPEL--DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEID----
C4 IIPDY--VDVNGTVEDILSKLPNRTSPELDLDIFNATYLNLTSEIADLTA
C5 IIPDY--VDVNGTVEDILSKLPNRTSPEFNLDIFNATYLNLTSEIADLTA
C6 TPPSS--YNFTEEFNKWYKNHSSYFNNTFNPGDFNFTGVNISEQLA----
C7 IIPDY--LDVNKTLNDLQQSRPNYTVPDLGLDQYNTTILNLTSEIAMLQN
C8 IIPDY--IDVNKTLEELEQQRPNYTLPELDIDRFNNTYLNLSAEIAELQR
C9 IIPDY--IDVNKTLEEL--GRPNFTLPDFNLDQFNNTYLNLSAEIALLNA
C10 IIPDY--IDVNKTLEEL--GRPNFTLPDFNLDQFNNTYLNLSAEIALLNA
C11 SAPSD--YDFQKEFDKFYKNLSTSFNNTFNPNDFNFSMVDVTAQIS----
C12 IEPPN--YNFQEEFDKYFKNQSSQFNITFDSSQFNVSIVNLNEQMA----
C13 IEPPN--YDFQEEFDKYFKNQSSHFNITFDSSQFNVSIVNLNEQMA----
C14 LLENSTDVDFKDELEEFFKNVTSHGPNFAEISKINTTLLDLSDEMA----
C15 LQPEL--DSFKQELDKYFKNHTSPDVDLGDISGINASVVDIQKEID----
C16 LQPEL--DSFKQELDKYFKNHTSPDVDLGDISGINASVVDIQKEID----
C17 LLGNSTGTDFKDELDEFFKNVSTSIPNFGALTQINTTLLDLSDEML----
C18 LLSNQTDESFRDELEEFFKNVSSQGPNFQEISKINATLLDLSDEMK----
.. .:. .. * : ::: ::
C1 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
C2 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
C3 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
C4 RSESLKNTTLELKELIANINATLVDLEWLNRVETYIKWPWWVWLIIVLVL
C5 RSESLKNTTLELKELIANINATLVDLEWLNRVETYIKWPWWVWLIIVLVL
C6 ----------TLTDVVNQLNKSFIDLKQMNVYEQTIKWPWYVWLAMIAGL
C7 KSDSLIESTVKLHKLIEQLNQTYVDLEWLNRLESYVKWPWWVWLAILLAL
C8 KSESLQNSTIQLQELIERINSSYVDLELLKRIETYVKWPWYVWLAIILVM
C9 KSESLYNTTQRLEKSIENINNSYIDLELLNRLESYVKWPWYVWLAIFLAL
C10 KSESLYNTTQRLEKLIENINNSYIDLELLNRLESYVKWPWYVWLAIFLAL
C11 ----------SLHQVVDQLNQSFIDLKKLNVYEKTIKWPWYIWLAMIAGI
C12 ----------ALDSVVKSLNESFIDLKKLGVYTQQPNTPWYAWLGMIAGL
C13 ----------ALDSVVKSLNESFIDLKKLGVYTQTIKWPWYAWLGMIAGL
C14 ----------ILQEVVKQLNDSYIDLKELGNYTYYNKWPWYIWLGFIAGL
C15 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
C16 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
C17 ----------ALQQVVKALNESYIDLKELGNYTYYNKWPWYIWLGFIAGL
C18 ----------VLNEVVKQLNESYIDLKELGNYTYYQKWPWYVWLGFIAGL
* . :* : :**: : : **: ** :. :
C1 VGLFMAIILLCYFTSCCSCCKGMC-SCGSCC-RFDE-DDSEPVLKGVKLH
C2 IAIVMATILLCCMTSCCSCLKGAC-SCGSCC-KFDE-DDSEPVLKGVKLH
C3 IAIVMATILLCCMTSCCSCLKGAC-SCGSCC-KFDE-DDSEPVLKGVKLH
C4 ILFTCLMLFCCCSTGCCGIFSCLASSCGACCDIRGTKLQRYEAIE--KVH
C5 ILFTCLMLFCCCSTGCCGIFSCLASSCGACCDIRGTKLQRYEAFE--KVH
C6 VGLVLAVIMLLCMTNCCSCFKGLC-SCRHC--SYDEIEDVYPAVRVHNKR
C7 IFTSFILLYCCCSTGCCGCTSCLA----DCRGQRLQ------RYEVEKVH
C8 SLFSFLMLYCCCMTGCCGCCSCLTSCCFDCRGKRLQ------QYEVEKVH
C9 ILFSFLMLYCCMATGCCGCCSCLSNSCFDCGGRRLQ------RYEVEKVH
C10 ILFSFLMLYCCMATGCCGCCSCLSNSCFDCGGRRLQ------RYEVEKVH
C11 VGLVLAVIMLMCMTNCCSCFKGMC-DCRRCCGSYDSYDDVYPAVRVNKKR
C12 VGLALAVFMLCCMTNCCSGFRGIC-SCKQC--QYDDYADVYPAVRVSGKR
C13 VGLALAVFMLCCMTNCCSGFRGIC-SCRQC--QYDDYADVYPAVRVSGKR
C14 VALLLCVFFLLCCTGCGTSCLGKM-KCRNCCDSYED-------FDVEKIH
C15 VGLFMAIILLCYFTSCCSCCKGMC-SCGSCC-RFDE-DDSEPVLKGVKLH
C16 VGLFMAIILLCYFTSCCSCCKGMC-SCGSCC-RFDE-DDSEPVLKGVKLH
C17 LALALCVFFILCCTGCGTSCLGKL-KCNRCCDKYEEYD-----LEPHKIH
C18 VALALCVFFLLCCTGCGTNCMGKF-KCNRCCDSYDDYE-----VEPHKIH
: *.* * :
C1 YT
C2 YT
C3 YT
C4 VQ
C5 VQ
C6 TE
C7 IQ
C8 IQ
C9 IQ
C10 IQ
C11 TV
C12 TV
C13 TV
C14 VH
C15 YT
C16 YT
C17 IH
C18 VH
-- Starting log on Thu Oct 27 01:05:19 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result/gapped_alignment/fubar,JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 18 taxa and 4656 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C1
Taxon 2 -> C10
Taxon 3 -> C11
Taxon 4 -> C12
Taxon 5 -> C13
Taxon 6 -> C14
Taxon 7 -> C15
Taxon 8 -> C16
Taxon 9 -> C17
Taxon 10 -> C18
Taxon 11 -> C2
Taxon 12 -> C3
Taxon 13 -> C4
Taxon 14 -> C5
Taxon 15 -> C6
Taxon 16 -> C7
Taxon 17 -> C8
Taxon 18 -> C9
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1666832721
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 1726653783
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 2313936250
Seed = 175900093
Swapseed = 1666832721
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 815 unique site patterns
Division 2 has 662 unique site patterns
Division 3 has 977 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -79092.950021 -- 57.269375
Chain 2 -- -77538.185280 -- 57.269375
Chain 3 -- -75568.443105 -- 57.269375
Chain 4 -- -73523.226363 -- 57.269375
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -76060.204164 -- 57.269375
Chain 2 -- -76967.701290 -- 57.269375
Chain 3 -- -78541.326888 -- 57.269375
Chain 4 -- -76568.358677 -- 57.269375
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-79092.950] (-77538.185) (-75568.443) (-73523.226) * [-76060.204] (-76967.701) (-78541.327) (-76568.359)
1000 -- (-38981.952) [-38709.921] (-38958.115) (-38996.308) * [-38790.722] (-39256.835) (-38859.160) (-39146.565) -- 2:29:51
2000 -- (-38619.908) [-38384.249] (-38585.299) (-38590.857) * [-38362.585] (-38426.004) (-38440.432) (-38474.442) -- 2:29:42
3000 -- (-38380.606) [-38342.802] (-38385.159) (-38403.243) * [-38322.596] (-38323.479) (-38326.494) (-38362.602) -- 2:29:33
4000 -- [-38322.024] (-38312.934) (-38353.108) (-38342.758) * (-38324.194) [-38309.569] (-38313.349) (-38337.656) -- 2:29:24
5000 -- (-38309.876) (-38315.682) (-38325.088) [-38310.255] * (-38305.286) [-38307.366] (-38317.478) (-38321.993) -- 2:25:56
Average standard deviation of split frequencies: 0.009821
6000 -- (-38318.868) (-38307.100) (-38305.982) [-38313.676] * (-38303.627) [-38301.471] (-38310.783) (-38308.090) -- 2:26:20
7000 -- [-38303.896] (-38309.459) (-38308.244) (-38312.698) * (-38317.665) [-38300.557] (-38319.618) (-38304.529) -- 2:26:35
8000 -- [-38306.775] (-38313.166) (-38309.227) (-38316.604) * (-38307.626) [-38305.922] (-38317.801) (-38300.764) -- 2:26:44
9000 -- (-38308.105) [-38309.861] (-38299.443) (-38311.998) * (-38300.254) (-38305.166) [-38301.477] (-38311.467) -- 2:24:58
10000 -- (-38310.802) [-38302.283] (-38311.150) (-38306.941) * (-38310.582) [-38311.572] (-38306.592) (-38320.408) -- 2:25:12
Average standard deviation of split frequencies: 0.005893
11000 -- (-38307.564) (-38299.347) (-38307.340) [-38308.401] * [-38307.327] (-38310.935) (-38300.353) (-38307.050) -- 2:25:21
12000 -- [-38304.296] (-38301.484) (-38305.548) (-38319.914) * (-38308.423) (-38314.581) [-38307.085] (-38308.251) -- 2:25:27
13000 -- (-38313.845) (-38310.161) [-38304.417] (-38317.480) * (-38309.153) (-38306.233) (-38316.441) [-38303.924] -- 2:25:31
14000 -- (-38308.420) (-38301.591) [-38301.412] (-38313.263) * (-38322.161) (-38312.370) [-38314.868] (-38302.456) -- 2:25:33
15000 -- (-38318.379) (-38311.106) [-38303.662] (-38315.938) * (-38314.709) [-38310.662] (-38310.251) (-38296.515) -- 2:25:33
Average standard deviation of split frequencies: 0.011049
16000 -- (-38308.534) (-38316.969) (-38312.063) [-38305.311] * (-38317.693) [-38308.351] (-38315.049) (-38308.108) -- 2:24:31
17000 -- (-38299.600) (-38316.058) [-38311.470] (-38311.112) * (-38312.075) (-38304.061) (-38306.932) [-38293.849] -- 2:24:33
18000 -- (-38303.462) [-38303.330] (-38309.811) (-38315.680) * (-38303.500) [-38306.316] (-38321.395) (-38313.956) -- 2:24:34
19000 -- (-38312.432) (-38316.458) (-38313.027) [-38309.456] * (-38305.807) [-38308.498] (-38304.505) (-38311.297) -- 2:23:42
20000 -- (-38308.442) (-38309.704) [-38305.196] (-38309.801) * [-38301.519] (-38301.155) (-38303.784) (-38310.383) -- 2:23:44
Average standard deviation of split frequencies: 0.004277
21000 -- (-38305.590) (-38315.555) [-38301.891] (-38307.328) * (-38300.625) (-38322.152) [-38306.488] (-38304.530) -- 2:23:44
22000 -- (-38312.111) (-38308.914) [-38298.245] (-38307.279) * (-38311.419) (-38315.834) (-38310.413) [-38303.011] -- 2:23:44
23000 -- (-38303.316) (-38319.753) [-38300.859] (-38305.731) * (-38316.016) [-38304.318] (-38316.878) (-38307.282) -- 2:23:00
24000 -- (-38303.412) (-38307.549) [-38300.162] (-38298.881) * (-38300.711) (-38307.118) (-38315.288) [-38313.787] -- 2:23:00
25000 -- (-38302.985) [-38307.020] (-38302.232) (-38313.365) * (-38308.712) (-38316.673) [-38304.328] (-38302.006) -- 2:23:00
Average standard deviation of split frequencies: 0.002266
26000 -- [-38301.326] (-38320.046) (-38307.192) (-38320.605) * (-38310.851) (-38308.252) (-38302.902) [-38306.605] -- 2:22:58
27000 -- (-38304.297) [-38301.869] (-38310.416) (-38312.209) * (-38305.198) [-38302.569] (-38311.543) (-38314.111) -- 2:22:20
28000 -- (-38309.562) (-38305.710) [-38312.871] (-38321.369) * (-38314.524) (-38303.517) [-38299.112] (-38313.983) -- 2:22:19
29000 -- [-38303.608] (-38313.629) (-38316.629) (-38309.266) * (-38307.085) (-38297.856) [-38303.889] (-38309.044) -- 2:22:18
30000 -- [-38297.854] (-38302.619) (-38304.344) (-38309.253) * [-38300.246] (-38312.255) (-38300.295) (-38305.233) -- 2:22:16
Average standard deviation of split frequencies: 0.005764
31000 -- (-38306.876) [-38303.262] (-38301.110) (-38311.063) * (-38307.649) (-38310.928) (-38310.626) [-38303.430] -- 2:22:13
32000 -- [-38304.472] (-38305.587) (-38313.959) (-38307.682) * (-38300.308) (-38310.866) [-38310.290] (-38305.278) -- 2:21:40
33000 -- (-38304.481) (-38318.340) [-38308.994] (-38303.149) * (-38301.422) (-38301.911) (-38303.547) [-38301.308] -- 2:21:37
34000 -- (-38302.153) (-38301.407) (-38297.033) [-38302.716] * (-38311.866) [-38300.738] (-38307.714) (-38296.596) -- 2:21:35
35000 -- (-38310.034) [-38299.079] (-38315.242) (-38314.327) * (-38310.577) (-38305.951) (-38310.393) [-38302.543] -- 2:21:32
Average standard deviation of split frequencies: 0.003274
36000 -- (-38309.563) [-38300.230] (-38297.333) (-38318.611) * (-38312.406) (-38314.573) (-38301.163) [-38297.853] -- 2:21:01
37000 -- (-38306.447) (-38301.495) [-38296.367] (-38300.350) * [-38306.563] (-38305.603) (-38315.581) (-38302.645) -- 2:20:58
38000 -- (-38299.554) (-38311.593) (-38300.685) [-38298.834] * [-38303.989] (-38312.455) (-38311.828) (-38309.856) -- 2:20:55
39000 -- [-38302.523] (-38315.560) (-38302.032) (-38314.147) * (-38302.488) (-38306.518) (-38316.949) [-38307.363] -- 2:20:51
40000 -- (-38304.719) [-38314.511] (-38306.949) (-38308.693) * [-38300.061] (-38326.632) (-38315.493) (-38312.430) -- 2:20:24
Average standard deviation of split frequencies: 0.003622
41000 -- (-38300.507) (-38316.269) (-38304.683) [-38302.953] * (-38303.301) (-38300.067) (-38308.877) [-38303.280] -- 2:20:20
42000 -- (-38299.092) (-38307.960) [-38308.960] (-38315.194) * (-38323.818) (-38305.082) (-38316.047) [-38304.247] -- 2:20:16
43000 -- (-38299.154) (-38307.399) (-38311.960) [-38304.189] * (-38312.527) [-38308.173] (-38300.043) (-38303.835) -- 2:20:12
44000 -- (-38308.714) (-38312.241) (-38315.503) [-38293.263] * (-38306.571) (-38309.003) (-38304.676) [-38309.066] -- 2:20:08
45000 -- (-38307.763) [-38303.898] (-38304.023) (-38304.536) * (-38306.529) (-38303.631) [-38300.382] (-38308.446) -- 2:20:04
Average standard deviation of split frequencies: 0.008326
46000 -- (-38312.715) [-38305.965] (-38302.219) (-38308.683) * (-38312.875) (-38307.695) (-38303.447) [-38294.164] -- 2:19:38
47000 -- (-38312.182) (-38315.661) [-38305.691] (-38303.464) * (-38305.551) (-38303.274) (-38307.524) [-38301.503] -- 2:19:34
48000 -- (-38308.264) (-38323.833) (-38303.620) [-38299.000] * (-38310.237) (-38308.581) (-38315.163) [-38304.641] -- 2:19:29
49000 -- [-38307.944] (-38303.301) (-38303.560) (-38312.799) * (-38320.935) (-38309.657) [-38313.220] (-38304.312) -- 2:19:24
50000 -- (-38306.810) (-38311.015) [-38305.512] (-38299.000) * (-38315.090) [-38302.451] (-38318.209) (-38308.314) -- 2:19:20
Average standard deviation of split frequencies: 0.010467
51000 -- (-38308.069) (-38312.807) [-38303.516] (-38296.401) * (-38319.562) [-38296.276] (-38320.429) (-38299.033) -- 2:18:56
52000 -- [-38307.174] (-38312.465) (-38313.163) (-38300.231) * (-38311.926) [-38297.542] (-38305.617) (-38301.032) -- 2:18:51
53000 -- [-38304.307] (-38320.385) (-38306.558) (-38300.465) * (-38317.243) (-38312.845) [-38301.309] (-38299.398) -- 2:18:46
54000 -- (-38300.390) (-38319.296) (-38306.539) [-38300.771] * (-38303.625) (-38303.717) (-38312.321) [-38294.974] -- 2:18:41
55000 -- (-38317.589) [-38298.682] (-38306.480) (-38308.835) * (-38305.488) [-38313.765] (-38308.783) (-38304.333) -- 2:18:36
Average standard deviation of split frequencies: 0.009470
56000 -- [-38305.905] (-38298.624) (-38319.942) (-38300.524) * (-38308.409) (-38303.028) (-38314.747) [-38300.207] -- 2:18:30
57000 -- (-38306.254) (-38306.735) (-38307.340) [-38308.782] * (-38307.382) [-38305.437] (-38304.773) (-38301.895) -- 2:18:08
58000 -- (-38312.326) (-38310.236) [-38301.749] (-38304.364) * (-38301.635) [-38301.675] (-38314.868) (-38316.887) -- 2:18:03
59000 -- (-38301.966) [-38298.960] (-38306.142) (-38313.847) * (-38308.082) (-38310.012) (-38311.341) [-38298.454] -- 2:17:57
60000 -- (-38312.699) [-38304.864] (-38296.893) (-38301.318) * (-38302.868) (-38313.720) (-38304.198) [-38305.992] -- 2:17:36
Average standard deviation of split frequencies: 0.009713
61000 -- (-38303.241) [-38305.448] (-38308.352) (-38312.150) * (-38304.735) (-38310.693) (-38297.606) [-38298.247] -- 2:17:30
62000 -- [-38300.137] (-38313.608) (-38304.029) (-38308.994) * (-38304.111) (-38298.297) [-38298.551] (-38311.179) -- 2:17:25
63000 -- (-38304.165) [-38302.576] (-38316.008) (-38299.579) * (-38303.329) (-38297.518) (-38310.095) [-38304.204] -- 2:17:19
64000 -- (-38303.879) [-38304.171] (-38308.771) (-38315.561) * (-38310.209) (-38314.683) [-38299.969] (-38304.365) -- 2:17:13
65000 -- (-38305.655) [-38307.602] (-38306.420) (-38308.081) * (-38313.071) (-38310.687) [-38310.529] (-38307.242) -- 2:17:08
Average standard deviation of split frequencies: 0.007142
66000 -- [-38306.097] (-38310.865) (-38315.975) (-38309.957) * (-38307.520) (-38314.861) (-38311.144) [-38307.799] -- 2:16:47
67000 -- (-38312.055) (-38298.108) [-38311.087] (-38305.745) * (-38318.613) (-38307.423) (-38313.404) [-38300.516] -- 2:16:42
68000 -- (-38315.440) [-38298.868] (-38298.650) (-38308.365) * (-38312.857) (-38312.353) (-38324.174) [-38303.842] -- 2:16:36
69000 -- [-38309.233] (-38309.020) (-38304.599) (-38305.933) * (-38325.334) (-38302.586) (-38316.297) [-38313.594] -- 2:16:30
70000 -- (-38312.349) [-38303.655] (-38316.045) (-38307.545) * [-38312.294] (-38312.359) (-38304.883) (-38306.964) -- 2:16:24
Average standard deviation of split frequencies: 0.005837
71000 -- (-38308.911) (-38303.703) (-38308.671) [-38299.729] * (-38309.949) [-38307.208] (-38299.441) (-38304.763) -- 2:16:17
72000 -- (-38314.320) [-38296.882] (-38302.029) (-38307.085) * (-38317.947) [-38305.610] (-38301.399) (-38306.773) -- 2:16:11
73000 -- (-38317.960) [-38296.300] (-38308.515) (-38304.129) * [-38316.977] (-38313.764) (-38302.488) (-38308.506) -- 2:16:05
74000 -- (-38310.537) [-38300.231] (-38312.981) (-38299.363) * (-38310.380) (-38315.374) (-38303.934) [-38309.244] -- 2:15:58
75000 -- (-38308.105) (-38306.993) [-38308.693] (-38298.525) * (-38298.397) (-38306.941) [-38304.715] (-38326.206) -- 2:15:40
Average standard deviation of split frequencies: 0.009692
76000 -- (-38303.372) [-38299.169] (-38302.863) (-38305.057) * [-38313.832] (-38309.171) (-38317.307) (-38313.540) -- 2:15:33
77000 -- (-38307.653) [-38303.884] (-38298.446) (-38298.105) * (-38316.914) (-38306.656) [-38305.899] (-38316.696) -- 2:15:27
78000 -- (-38313.066) (-38298.365) [-38312.835] (-38298.518) * (-38302.014) [-38305.242] (-38314.708) (-38311.702) -- 2:15:20
79000 -- (-38316.869) (-38304.052) (-38305.551) [-38297.035] * (-38305.644) (-38319.431) [-38302.473] (-38308.339) -- 2:15:02
80000 -- (-38302.441) [-38301.060] (-38309.028) (-38301.393) * (-38308.525) (-38311.169) (-38302.925) [-38308.524] -- 2:14:56
Average standard deviation of split frequencies: 0.010957
81000 -- (-38313.255) (-38308.397) (-38316.079) [-38304.230] * (-38297.600) (-38313.436) (-38303.909) [-38306.405] -- 2:14:49
82000 -- (-38317.156) (-38301.487) (-38303.314) [-38309.160] * (-38311.025) [-38301.787] (-38304.538) (-38319.976) -- 2:14:42
83000 -- (-38307.504) [-38301.438] (-38303.459) (-38309.185) * [-38306.256] (-38312.661) (-38324.131) (-38310.603) -- 2:14:25
84000 -- (-38309.132) (-38313.926) [-38308.584] (-38305.918) * (-38304.837) (-38312.521) [-38302.216] (-38310.244) -- 2:14:18
85000 -- (-38309.841) (-38308.243) (-38310.266) [-38303.042] * (-38300.426) (-38309.857) (-38302.191) [-38305.475] -- 2:14:12
Average standard deviation of split frequencies: 0.009935
86000 -- [-38305.788] (-38324.236) (-38307.060) (-38296.120) * (-38301.200) (-38307.316) [-38314.386] (-38316.118) -- 2:13:54
87000 -- (-38324.490) (-38307.228) [-38298.636] (-38301.588) * (-38301.311) (-38304.005) (-38310.564) [-38300.264] -- 2:13:48
88000 -- (-38316.286) (-38304.381) [-38303.684] (-38315.219) * (-38308.499) (-38305.777) (-38305.415) [-38301.631] -- 2:13:41
89000 -- [-38309.829] (-38316.650) (-38311.122) (-38313.767) * (-38305.684) (-38304.492) (-38306.011) [-38306.105] -- 2:13:24
90000 -- (-38311.602) (-38303.764) (-38310.100) [-38307.035] * [-38307.179] (-38301.371) (-38305.715) (-38312.601) -- 2:13:17
Average standard deviation of split frequencies: 0.007474
91000 -- (-38304.575) (-38304.461) [-38295.476] (-38307.276) * (-38309.967) (-38306.095) [-38302.995] (-38314.565) -- 2:13:11
92000 -- (-38306.108) (-38309.922) (-38306.014) [-38301.169] * (-38311.044) (-38305.641) [-38306.792] (-38326.988) -- 2:13:04
93000 -- (-38305.865) [-38306.271] (-38315.273) (-38302.210) * (-38311.836) (-38304.390) [-38301.416] (-38300.629) -- 2:12:57
94000 -- (-38297.689) [-38307.007] (-38310.837) (-38306.250) * (-38305.754) (-38296.649) (-38305.091) [-38306.189] -- 2:12:50
95000 -- (-38296.913) (-38312.619) [-38316.501] (-38308.287) * (-38308.156) (-38304.693) [-38299.089] (-38298.625) -- 2:12:44
Average standard deviation of split frequencies: 0.006445
96000 -- (-38309.485) [-38316.119] (-38302.506) (-38301.957) * [-38299.019] (-38313.469) (-38303.060) (-38309.408) -- 2:12:27
97000 -- (-38304.975) [-38329.779] (-38307.132) (-38305.415) * (-38303.224) (-38305.780) [-38300.565] (-38306.350) -- 2:12:20
98000 -- [-38309.387] (-38302.139) (-38317.972) (-38307.618) * (-38312.030) (-38308.184) (-38318.290) [-38307.228] -- 2:12:13
99000 -- (-38309.742) [-38303.077] (-38318.733) (-38314.255) * (-38310.407) (-38297.133) (-38308.511) [-38304.276] -- 2:12:06
100000 -- (-38308.621) (-38312.720) [-38305.455] (-38304.849) * (-38317.668) [-38308.662] (-38307.139) (-38302.073) -- 2:11:50
Average standard deviation of split frequencies: 0.005854
101000 -- (-38299.028) (-38309.374) [-38300.483] (-38307.526) * (-38315.074) [-38311.125] (-38313.742) (-38312.838) -- 2:11:44
102000 -- (-38301.267) (-38315.219) (-38311.809) [-38307.044] * [-38301.919] (-38308.441) (-38307.529) (-38312.750) -- 2:11:37
103000 -- (-38301.216) (-38305.270) (-38302.772) [-38311.469] * (-38304.294) [-38305.308] (-38314.794) (-38306.022) -- 2:11:30
104000 -- [-38297.218] (-38305.694) (-38308.532) (-38304.676) * (-38311.775) (-38320.488) (-38305.941) [-38308.982] -- 2:11:23
105000 -- (-38301.599) (-38303.336) [-38303.229] (-38315.925) * (-38311.330) (-38308.483) [-38298.709] (-38304.831) -- 2:11:16
Average standard deviation of split frequencies: 0.004725
106000 -- [-38302.745] (-38301.810) (-38302.205) (-38311.256) * (-38316.617) [-38300.280] (-38310.529) (-38309.903) -- 2:11:08
107000 -- (-38298.478) (-38301.220) [-38300.426] (-38312.227) * [-38303.646] (-38305.054) (-38314.429) (-38311.550) -- 2:11:01
108000 -- (-38292.354) (-38315.641) [-38301.210] (-38304.443) * (-38314.498) (-38302.448) (-38309.545) [-38303.086] -- 2:10:54
109000 -- (-38306.122) (-38302.657) [-38304.444] (-38318.424) * (-38319.074) (-38312.891) [-38301.692] (-38310.056) -- 2:10:47
110000 -- [-38306.177] (-38307.050) (-38303.737) (-38311.779) * (-38305.846) [-38308.348] (-38306.966) (-38308.723) -- 2:10:32
Average standard deviation of split frequencies: 0.002929
111000 -- (-38305.821) [-38306.495] (-38311.323) (-38309.240) * (-38298.536) (-38305.452) [-38318.893] (-38322.595) -- 2:10:24
112000 -- (-38309.060) (-38311.353) [-38308.509] (-38298.238) * (-38300.427) (-38302.819) (-38318.152) [-38299.668] -- 2:10:17
113000 -- (-38305.826) (-38310.225) (-38307.560) [-38302.187] * (-38311.399) (-38308.579) [-38306.520] (-38300.847) -- 2:10:10
114000 -- (-38315.750) (-38304.190) (-38310.666) [-38302.956] * (-38318.080) (-38306.678) [-38306.770] (-38303.330) -- 2:10:03
115000 -- (-38318.759) [-38306.908] (-38315.976) (-38314.332) * (-38310.779) (-38312.717) (-38303.472) [-38304.730] -- 2:09:55
Average standard deviation of split frequencies: 0.002794
116000 -- (-38310.467) (-38326.210) [-38307.731] (-38303.974) * [-38303.149] (-38304.490) (-38305.138) (-38299.827) -- 2:09:48
117000 -- (-38301.307) (-38322.678) [-38310.832] (-38305.712) * (-38298.082) (-38309.393) [-38300.667] (-38300.877) -- 2:09:40
118000 -- [-38307.296] (-38320.342) (-38321.108) (-38308.748) * (-38312.166) [-38300.191] (-38299.784) (-38302.470) -- 2:09:26
119000 -- (-38305.485) [-38310.435] (-38303.806) (-38309.188) * (-38323.412) [-38301.359] (-38307.536) (-38302.273) -- 2:09:18
120000 -- [-38301.443] (-38307.620) (-38317.415) (-38312.132) * (-38306.684) (-38315.219) [-38306.166] (-38308.384) -- 2:09:11
Average standard deviation of split frequencies: 0.002198
121000 -- (-38308.272) [-38304.477] (-38310.585) (-38316.869) * (-38312.945) (-38312.671) [-38311.513] (-38302.755) -- 2:09:03
122000 -- (-38320.532) (-38310.511) (-38300.435) [-38314.127] * (-38316.027) (-38308.171) [-38303.244] (-38314.592) -- 2:08:56
123000 -- (-38301.532) [-38300.981] (-38298.199) (-38303.313) * [-38305.556] (-38307.939) (-38305.082) (-38295.711) -- 2:08:49
124000 -- [-38304.640] (-38297.616) (-38305.356) (-38309.327) * [-38300.443] (-38307.470) (-38304.531) (-38311.562) -- 2:08:41
125000 -- (-38305.633) (-38303.332) [-38302.386] (-38304.284) * [-38306.954] (-38309.514) (-38313.132) (-38308.201) -- 2:08:33
Average standard deviation of split frequencies: 0.002572
126000 -- (-38309.691) (-38303.065) (-38314.187) [-38301.234] * [-38302.075] (-38303.965) (-38311.676) (-38305.532) -- 2:08:26
127000 -- [-38308.420] (-38307.938) (-38317.071) (-38307.282) * [-38309.132] (-38309.872) (-38318.862) (-38308.743) -- 2:08:18
128000 -- [-38306.179] (-38307.820) (-38313.389) (-38306.011) * (-38312.372) (-38321.307) (-38319.016) [-38303.625] -- 2:08:11
129000 -- (-38308.564) (-38308.133) (-38302.755) [-38322.591] * [-38307.557] (-38312.935) (-38304.710) (-38307.236) -- 2:07:56
130000 -- [-38303.588] (-38303.344) (-38296.852) (-38308.650) * (-38309.398) [-38314.578] (-38306.322) (-38302.322) -- 2:07:49
Average standard deviation of split frequencies: 0.002029
131000 -- (-38309.143) (-38307.444) [-38304.351] (-38311.705) * [-38307.390] (-38314.615) (-38313.555) (-38306.490) -- 2:07:41
132000 -- (-38310.318) (-38301.224) [-38299.342] (-38315.438) * (-38315.678) (-38306.118) [-38306.379] (-38305.947) -- 2:07:34
133000 -- (-38324.013) (-38298.627) (-38308.227) [-38308.702] * [-38309.711] (-38304.742) (-38302.373) (-38302.349) -- 2:07:26
134000 -- (-38309.951) (-38301.854) (-38300.536) [-38301.863] * (-38315.023) [-38304.384] (-38315.749) (-38301.799) -- 2:07:12
135000 -- [-38303.179] (-38307.812) (-38306.168) (-38306.272) * (-38303.372) (-38316.067) (-38309.922) [-38306.292] -- 2:07:04
Average standard deviation of split frequencies: 0.002816
136000 -- [-38303.522] (-38309.706) (-38302.046) (-38303.080) * (-38299.152) (-38314.525) (-38307.281) [-38305.905] -- 2:06:57
137000 -- (-38309.214) (-38314.270) [-38301.302] (-38304.449) * (-38301.964) (-38308.341) (-38307.067) [-38302.717] -- 2:06:49
138000 -- (-38300.278) (-38313.184) [-38306.814] (-38316.307) * [-38300.951] (-38318.482) (-38303.616) (-38297.605) -- 2:06:41
139000 -- (-38312.225) (-38308.908) (-38304.434) [-38313.600] * (-38303.780) (-38304.165) (-38297.744) [-38300.691] -- 2:06:34
140000 -- (-38320.444) (-38313.323) [-38303.713] (-38310.879) * (-38309.366) [-38300.613] (-38303.290) (-38312.913) -- 2:06:20
Average standard deviation of split frequencies: 0.002513
141000 -- (-38305.339) [-38315.819] (-38305.045) (-38312.395) * (-38318.478) (-38301.671) [-38311.420] (-38305.508) -- 2:06:12
142000 -- (-38303.931) (-38300.562) [-38301.478] (-38305.529) * (-38320.728) [-38304.543] (-38303.577) (-38305.670) -- 2:06:04
143000 -- (-38304.795) (-38303.096) [-38297.491] (-38298.072) * [-38309.889] (-38318.875) (-38312.409) (-38316.987) -- 2:05:57
144000 -- (-38306.310) (-38310.709) [-38313.325] (-38305.281) * (-38315.789) (-38308.622) (-38301.199) [-38306.413] -- 2:05:43
145000 -- [-38305.758] (-38309.373) (-38318.327) (-38303.120) * (-38311.687) (-38323.255) [-38304.131] (-38317.358) -- 2:05:35
Average standard deviation of split frequencies: 0.004641
146000 -- (-38297.806) (-38309.898) [-38309.441] (-38305.124) * [-38303.980] (-38324.079) (-38310.144) (-38316.646) -- 2:05:28
147000 -- [-38308.212] (-38306.768) (-38316.050) (-38300.576) * [-38308.253] (-38321.014) (-38305.747) (-38308.716) -- 2:05:20
148000 -- (-38302.861) [-38311.243] (-38318.149) (-38322.125) * (-38316.422) (-38322.710) (-38314.486) [-38306.744] -- 2:05:06
149000 -- [-38305.593] (-38300.421) (-38312.787) (-38309.910) * (-38311.805) (-38310.940) [-38306.698] (-38323.860) -- 2:04:59
150000 -- [-38302.712] (-38306.451) (-38316.525) (-38302.113) * (-38307.180) [-38305.293] (-38314.433) (-38312.167) -- 2:04:51
Average standard deviation of split frequencies: 0.005084
151000 -- (-38299.516) (-38313.283) (-38314.865) [-38305.458] * (-38306.826) (-38315.601) (-38310.748) [-38315.453] -- 2:04:43
152000 -- (-38301.733) (-38307.292) [-38312.069] (-38310.298) * (-38305.905) (-38297.072) [-38299.323] (-38319.542) -- 2:04:35
153000 -- (-38303.661) [-38305.607] (-38310.257) (-38315.691) * (-38314.010) [-38307.935] (-38306.674) (-38320.870) -- 2:04:27
154000 -- (-38301.529) (-38310.283) [-38307.308] (-38323.797) * (-38293.640) [-38307.735] (-38313.958) (-38317.659) -- 2:04:14
155000 -- (-38319.602) (-38312.184) [-38300.522] (-38302.552) * [-38298.452] (-38305.485) (-38310.791) (-38304.046) -- 2:04:06
Average standard deviation of split frequencies: 0.005288
156000 -- [-38310.428] (-38312.478) (-38317.431) (-38320.835) * (-38300.661) (-38311.064) (-38309.529) [-38314.443] -- 2:03:59
157000 -- (-38309.312) [-38306.250] (-38312.103) (-38309.752) * (-38307.009) [-38306.185] (-38317.303) (-38319.628) -- 2:03:51
158000 -- (-38313.681) (-38314.945) (-38316.130) [-38298.325] * (-38301.360) [-38304.716] (-38313.421) (-38301.492) -- 2:03:43
159000 -- (-38309.597) (-38311.508) (-38310.284) [-38300.054] * (-38305.627) (-38307.130) [-38302.430] (-38302.228) -- 2:03:35
160000 -- (-38317.665) [-38304.146] (-38308.386) (-38305.544) * (-38305.377) (-38306.393) [-38303.567] (-38315.240) -- 2:03:27
Average standard deviation of split frequencies: 0.004951
161000 -- [-38307.724] (-38310.854) (-38311.294) (-38307.038) * (-38300.192) (-38302.917) (-38301.307) [-38305.355] -- 2:03:19
162000 -- (-38303.283) [-38303.781] (-38308.816) (-38305.809) * (-38304.244) [-38301.324] (-38308.561) (-38325.035) -- 2:03:06
163000 -- (-38307.435) [-38300.261] (-38303.246) (-38316.078) * [-38294.879] (-38300.756) (-38308.712) (-38306.870) -- 2:02:58
164000 -- (-38306.831) (-38321.043) (-38308.874) [-38313.703] * (-38305.509) (-38313.311) [-38307.649] (-38323.394) -- 2:02:56
165000 -- [-38292.673] (-38307.844) (-38314.514) (-38315.442) * (-38302.021) (-38312.781) [-38310.660] (-38316.732) -- 2:02:48
Average standard deviation of split frequencies: 0.004437
166000 -- (-38303.059) [-38297.832] (-38315.328) (-38302.553) * (-38300.453) (-38321.458) (-38301.895) [-38303.676] -- 2:02:40
167000 -- (-38311.039) (-38307.453) [-38299.386] (-38301.135) * (-38306.727) (-38308.538) [-38300.284] (-38304.800) -- 2:02:32
168000 -- (-38309.475) [-38299.360] (-38314.458) (-38300.321) * [-38304.885] (-38317.398) (-38309.546) (-38318.385) -- 2:02:24
169000 -- (-38313.605) (-38307.614) (-38306.934) [-38300.775] * (-38314.780) (-38306.764) [-38302.482] (-38319.312) -- 2:02:11
170000 -- [-38307.725] (-38307.160) (-38303.198) (-38302.130) * [-38310.412] (-38306.556) (-38313.265) (-38313.890) -- 2:02:03
Average standard deviation of split frequencies: 0.003625
171000 -- (-38316.790) [-38301.441] (-38307.384) (-38304.805) * (-38309.671) (-38313.575) [-38301.082] (-38315.134) -- 2:01:55
172000 -- (-38310.366) (-38302.214) [-38298.678] (-38308.490) * (-38300.152) (-38301.753) [-38298.385] (-38310.098) -- 2:01:47
173000 -- (-38312.733) (-38304.175) (-38326.598) [-38308.414] * [-38308.286] (-38302.934) (-38305.797) (-38308.489) -- 2:01:39
174000 -- [-38315.517] (-38312.346) (-38311.714) (-38301.848) * [-38309.851] (-38305.069) (-38306.733) (-38309.095) -- 2:01:26
175000 -- (-38314.699) [-38299.191] (-38313.837) (-38309.479) * (-38316.362) (-38312.074) [-38303.502] (-38306.511) -- 2:01:18
Average standard deviation of split frequencies: 0.002511
176000 -- [-38306.338] (-38302.145) (-38303.263) (-38301.928) * (-38315.098) (-38305.261) (-38317.190) [-38306.363] -- 2:01:10
177000 -- (-38318.076) (-38318.308) (-38302.208) [-38303.194] * (-38320.159) [-38312.249] (-38308.251) (-38302.889) -- 2:01:02
178000 -- (-38315.348) (-38308.119) (-38302.351) [-38309.360] * (-38313.461) (-38303.552) [-38309.840] (-38304.422) -- 2:00:54
179000 -- (-38310.506) (-38302.846) (-38314.719) [-38311.724] * (-38308.558) (-38309.946) [-38304.781] (-38304.759) -- 2:00:46
180000 -- [-38299.256] (-38311.741) (-38306.685) (-38314.859) * (-38295.844) (-38312.329) (-38319.643) [-38304.576] -- 2:00:38
Average standard deviation of split frequencies: 0.002120
181000 -- [-38310.100] (-38307.421) (-38306.000) (-38305.454) * (-38300.824) [-38298.359] (-38319.965) (-38308.552) -- 2:00:30
182000 -- [-38305.713] (-38312.031) (-38305.388) (-38308.494) * (-38299.193) (-38302.411) (-38310.445) [-38302.347] -- 2:00:18
183000 -- (-38305.678) (-38309.927) [-38298.122] (-38313.101) * (-38314.835) (-38305.034) (-38303.653) [-38302.526] -- 2:00:10
184000 -- [-38298.461] (-38313.551) (-38303.267) (-38306.053) * (-38306.028) [-38305.964] (-38305.500) (-38308.229) -- 2:00:02
185000 -- (-38309.522) [-38309.216] (-38307.535) (-38309.858) * [-38299.202] (-38312.265) (-38301.984) (-38312.028) -- 1:59:54
Average standard deviation of split frequencies: 0.001109
186000 -- (-38313.309) (-38312.687) [-38311.281] (-38312.176) * (-38303.880) (-38305.650) (-38315.822) [-38307.224] -- 1:59:45
187000 -- (-38305.863) [-38302.062] (-38302.797) (-38312.748) * (-38296.888) [-38313.606] (-38297.826) (-38299.894) -- 1:59:37
188000 -- (-38304.447) [-38299.655] (-38312.828) (-38301.285) * [-38298.359] (-38309.339) (-38308.612) (-38298.799) -- 1:59:29
189000 -- (-38306.789) (-38318.617) (-38297.146) [-38305.430] * (-38310.118) [-38296.658] (-38303.143) (-38315.569) -- 1:59:21
190000 -- (-38310.428) (-38314.010) [-38300.684] (-38309.572) * [-38300.092] (-38303.242) (-38306.347) (-38317.849) -- 1:59:13
Average standard deviation of split frequencies: 0.000773
191000 -- (-38307.044) (-38304.645) [-38305.254] (-38301.065) * (-38307.834) (-38304.585) [-38306.538] (-38309.349) -- 1:59:05
192000 -- (-38325.003) (-38306.965) [-38294.707] (-38309.534) * (-38308.492) (-38311.569) [-38312.510] (-38309.223) -- 1:58:57
193000 -- (-38307.567) (-38309.770) (-38307.596) [-38304.225] * (-38309.291) [-38303.252] (-38299.454) (-38310.982) -- 1:58:45
194000 -- (-38307.065) (-38308.554) (-38319.749) [-38304.773] * (-38312.170) [-38301.447] (-38319.570) (-38303.986) -- 1:58:36
195000 -- (-38316.215) (-38303.153) (-38307.214) [-38306.794] * (-38307.032) [-38306.585] (-38308.442) (-38306.821) -- 1:58:28
Average standard deviation of split frequencies: 0.000321
196000 -- (-38307.686) (-38302.429) (-38308.436) [-38307.580] * [-38305.926] (-38307.304) (-38315.919) (-38306.869) -- 1:58:20
197000 -- (-38316.435) (-38310.890) (-38310.866) [-38311.633] * (-38310.067) (-38311.271) [-38309.085] (-38309.472) -- 1:58:12
198000 -- (-38300.868) [-38306.363] (-38312.379) (-38321.081) * (-38321.351) (-38305.731) [-38307.437] (-38316.697) -- 1:58:04
199000 -- [-38299.198] (-38302.114) (-38316.445) (-38325.810) * (-38305.932) (-38321.933) (-38317.261) [-38312.046] -- 1:57:56
200000 -- [-38303.375] (-38313.430) (-38305.155) (-38305.194) * (-38308.545) (-38309.543) (-38307.008) [-38304.475] -- 1:57:48
Average standard deviation of split frequencies: 0.000313
201000 -- [-38305.176] (-38309.499) (-38304.955) (-38300.130) * [-38317.208] (-38308.957) (-38303.784) (-38309.029) -- 1:57:39
202000 -- (-38313.851) (-38313.846) (-38313.871) [-38304.625] * (-38304.238) [-38312.661] (-38305.969) (-38303.769) -- 1:57:31
203000 -- [-38308.293] (-38316.172) (-38299.876) (-38321.424) * (-38310.906) (-38308.693) (-38304.511) [-38299.386] -- 1:57:19
204000 -- (-38309.760) (-38304.994) [-38303.508] (-38303.477) * (-38302.377) [-38302.777] (-38320.849) (-38310.760) -- 1:57:11
205000 -- [-38301.584] (-38321.556) (-38306.794) (-38305.782) * [-38305.141] (-38308.734) (-38316.482) (-38304.939) -- 1:57:03
Average standard deviation of split frequencies: 0.000915
206000 -- (-38306.389) (-38304.540) (-38315.617) [-38313.330] * [-38304.741] (-38307.412) (-38313.741) (-38323.647) -- 1:56:54
207000 -- [-38310.426] (-38306.216) (-38312.821) (-38316.826) * (-38293.440) (-38318.579) [-38296.701] (-38310.076) -- 1:56:46
208000 -- (-38305.954) [-38303.758] (-38312.891) (-38308.341) * (-38312.247) (-38319.885) [-38304.964] (-38309.106) -- 1:56:34
209000 -- (-38307.299) [-38311.460] (-38310.291) (-38307.689) * (-38315.825) (-38319.974) (-38314.951) [-38310.017] -- 1:56:26
210000 -- (-38305.843) [-38302.682] (-38306.540) (-38318.002) * [-38306.819] (-38307.790) (-38314.441) (-38310.354) -- 1:56:18
Average standard deviation of split frequencies: 0.000597
211000 -- (-38301.185) (-38312.268) (-38299.750) [-38296.833] * (-38314.581) (-38312.490) (-38303.457) [-38301.433] -- 1:56:10
212000 -- (-38304.804) (-38305.777) (-38310.541) [-38297.830] * (-38303.936) [-38306.945] (-38307.003) (-38303.960) -- 1:56:01
213000 -- (-38309.386) (-38309.903) (-38308.241) [-38298.027] * (-38306.562) (-38314.141) (-38310.688) [-38293.654] -- 1:55:53
214000 -- (-38303.658) (-38305.430) (-38320.525) [-38303.486] * (-38309.679) (-38310.778) [-38298.208] (-38300.323) -- 1:55:41
215000 -- (-38311.944) (-38300.794) (-38306.176) [-38307.413] * (-38308.945) (-38309.306) (-38308.130) [-38301.310] -- 1:55:33
Average standard deviation of split frequencies: 0.000727
216000 -- (-38336.629) (-38305.676) (-38309.679) [-38298.226] * (-38317.778) (-38322.587) [-38316.974] (-38308.420) -- 1:55:25
217000 -- (-38317.778) (-38311.146) (-38304.850) [-38299.578] * [-38295.677] (-38313.431) (-38326.507) (-38307.547) -- 1:55:17
218000 -- (-38313.092) (-38303.945) (-38303.783) [-38302.773] * (-38306.624) [-38301.805] (-38314.752) (-38311.772) -- 1:55:08
219000 -- (-38309.559) (-38323.032) [-38306.829] (-38310.184) * [-38300.336] (-38302.349) (-38302.857) (-38304.352) -- 1:55:00
220000 -- (-38310.486) (-38304.124) [-38307.481] (-38298.742) * [-38298.973] (-38316.408) (-38307.688) (-38299.501) -- 1:54:55
Average standard deviation of split frequencies: 0.001469
221000 -- [-38304.169] (-38315.697) (-38312.353) (-38300.093) * (-38294.632) (-38314.805) (-38314.190) [-38303.444] -- 1:54:47
222000 -- (-38302.269) (-38305.818) (-38313.917) [-38305.410] * [-38299.111] (-38311.139) (-38311.292) (-38305.617) -- 1:54:39
223000 -- [-38306.414] (-38307.176) (-38312.793) (-38304.804) * (-38296.958) [-38308.037] (-38308.310) (-38302.836) -- 1:54:27
224000 -- (-38319.604) (-38312.691) (-38309.307) [-38300.233] * (-38307.881) (-38302.607) [-38297.217] (-38308.479) -- 1:54:19
225000 -- (-38310.930) [-38297.825] (-38306.121) (-38307.850) * [-38308.285] (-38313.625) (-38302.359) (-38314.046) -- 1:54:11
Average standard deviation of split frequencies: 0.001825
226000 -- (-38303.510) (-38296.978) [-38307.510] (-38316.690) * [-38295.264] (-38316.347) (-38310.088) (-38320.754) -- 1:53:59
227000 -- (-38301.890) (-38305.371) (-38308.021) [-38314.399] * (-38304.841) (-38312.471) [-38298.490] (-38308.835) -- 1:53:51
228000 -- (-38309.809) (-38307.070) (-38304.046) [-38308.854] * (-38300.241) (-38314.597) [-38307.462] (-38315.626) -- 1:53:42
229000 -- (-38313.937) (-38301.562) [-38309.068] (-38300.923) * (-38302.869) [-38308.490] (-38307.941) (-38311.357) -- 1:53:34
230000 -- [-38313.699] (-38299.201) (-38305.788) (-38306.275) * [-38304.024] (-38306.602) (-38305.564) (-38312.416) -- 1:53:26
Average standard deviation of split frequencies: 0.001788
231000 -- (-38315.789) (-38304.027) [-38294.345] (-38304.352) * (-38316.981) [-38300.254] (-38309.445) (-38312.494) -- 1:53:17
232000 -- (-38322.461) (-38328.754) (-38307.932) [-38302.918] * [-38310.063] (-38308.400) (-38310.545) (-38317.380) -- 1:53:09
233000 -- (-38321.616) (-38320.177) (-38307.804) [-38303.108] * (-38301.841) [-38314.094] (-38303.687) (-38314.311) -- 1:52:57
234000 -- (-38315.653) (-38311.183) (-38305.808) [-38303.033] * (-38315.537) (-38320.896) [-38305.885] (-38314.812) -- 1:52:49
235000 -- (-38305.189) (-38306.935) (-38302.501) [-38303.831] * [-38304.474] (-38317.025) (-38314.508) (-38307.867) -- 1:52:41
Average standard deviation of split frequencies: 0.001373
236000 -- (-38309.297) (-38317.341) [-38302.512] (-38293.552) * [-38298.791] (-38304.447) (-38320.749) (-38310.067) -- 1:52:29
237000 -- (-38320.772) (-38309.526) (-38311.780) [-38302.828] * [-38302.074] (-38304.823) (-38317.347) (-38304.637) -- 1:52:21
238000 -- [-38302.051] (-38308.574) (-38315.031) (-38304.793) * (-38307.266) [-38310.046] (-38328.713) (-38310.678) -- 1:52:13
239000 -- (-38311.471) (-38303.670) (-38315.695) [-38301.585] * [-38309.767] (-38309.225) (-38307.346) (-38317.951) -- 1:52:04
240000 -- [-38298.422] (-38314.946) (-38317.044) (-38298.476) * (-38313.164) [-38303.034] (-38300.805) (-38310.010) -- 1:51:56
Average standard deviation of split frequencies: 0.001959
241000 -- (-38296.729) [-38312.500] (-38312.817) (-38315.035) * (-38310.863) [-38300.258] (-38299.080) (-38304.136) -- 1:51:48
242000 -- (-38304.211) (-38315.532) (-38311.727) [-38312.509] * [-38301.177] (-38305.120) (-38300.542) (-38312.910) -- 1:51:39
243000 -- (-38313.323) [-38308.014] (-38310.138) (-38309.798) * (-38296.633) (-38311.265) [-38308.013] (-38305.576) -- 1:51:31
244000 -- (-38309.613) (-38302.170) [-38304.247] (-38302.228) * [-38304.747] (-38302.609) (-38304.523) (-38300.079) -- 1:51:20
245000 -- [-38309.101] (-38307.133) (-38306.555) (-38301.544) * (-38309.227) [-38307.990] (-38307.829) (-38306.663) -- 1:51:11
Average standard deviation of split frequencies: 0.002994
246000 -- (-38300.660) [-38299.854] (-38333.205) (-38304.416) * (-38318.868) (-38308.972) (-38304.441) [-38307.059] -- 1:51:03
247000 -- (-38302.276) [-38299.758] (-38320.639) (-38317.321) * (-38321.198) (-38299.814) [-38302.662] (-38314.145) -- 1:50:55
248000 -- (-38301.844) [-38300.931] (-38315.428) (-38313.745) * (-38310.725) (-38305.787) (-38306.740) [-38299.420] -- 1:50:43
249000 -- (-38311.355) [-38305.981] (-38312.595) (-38305.123) * (-38310.195) (-38310.823) (-38310.225) [-38300.782] -- 1:50:35
250000 -- (-38304.529) (-38301.490) [-38304.345] (-38317.390) * (-38314.544) (-38315.063) (-38306.670) [-38308.898] -- 1:50:27
Average standard deviation of split frequencies: 0.002821
251000 -- (-38311.992) (-38310.872) [-38297.302] (-38312.600) * (-38305.028) [-38306.853] (-38316.167) (-38315.145) -- 1:50:18
252000 -- [-38302.107] (-38308.178) (-38303.125) (-38310.654) * (-38305.104) [-38303.074] (-38312.049) (-38305.007) -- 1:50:10
253000 -- (-38314.631) (-38302.890) (-38302.953) [-38301.388] * (-38314.474) (-38303.481) [-38308.025] (-38306.098) -- 1:50:01
254000 -- (-38301.543) (-38308.088) (-38309.877) [-38295.378] * (-38301.055) (-38307.668) [-38300.222] (-38299.282) -- 1:49:53
255000 -- (-38302.869) (-38315.242) (-38310.550) [-38301.497] * (-38302.740) (-38299.717) (-38305.836) [-38308.576] -- 1:49:42
Average standard deviation of split frequencies: 0.003453
256000 -- (-38306.483) (-38306.211) [-38307.239] (-38307.705) * [-38299.090] (-38302.673) (-38318.473) (-38306.336) -- 1:49:33
257000 -- (-38310.236) [-38305.765] (-38312.762) (-38314.161) * [-38306.217] (-38296.631) (-38310.322) (-38317.075) -- 1:49:25
258000 -- (-38312.396) [-38306.337] (-38301.985) (-38302.395) * [-38303.072] (-38306.696) (-38301.377) (-38307.401) -- 1:49:17
259000 -- (-38325.650) (-38311.851) (-38311.494) [-38300.476] * (-38314.688) [-38294.959] (-38308.540) (-38307.629) -- 1:49:08
260000 -- (-38308.118) [-38309.831] (-38317.120) (-38310.228) * (-38304.260) [-38301.711] (-38313.010) (-38314.802) -- 1:49:00
Average standard deviation of split frequencies: 0.003391
261000 -- (-38312.329) (-38309.809) [-38300.380] (-38312.527) * [-38303.272] (-38311.215) (-38320.251) (-38328.064) -- 1:48:52
262000 -- (-38317.140) (-38300.396) [-38301.954] (-38302.826) * (-38310.242) [-38308.219] (-38316.971) (-38319.644) -- 1:48:43
263000 -- (-38313.586) (-38299.611) (-38303.585) [-38308.690] * (-38305.394) (-38313.388) [-38304.678] (-38324.996) -- 1:48:35
264000 -- (-38312.481) (-38309.802) (-38300.464) [-38301.282] * (-38308.375) (-38311.210) [-38306.174] (-38326.598) -- 1:48:26
265000 -- (-38309.736) [-38302.429] (-38311.924) (-38310.006) * (-38310.495) (-38308.331) [-38306.047] (-38321.574) -- 1:48:18
Average standard deviation of split frequencies: 0.003766
266000 -- (-38311.364) (-38318.294) [-38309.163] (-38319.071) * (-38312.733) (-38306.668) [-38305.858] (-38315.896) -- 1:48:07
267000 -- (-38301.367) [-38302.962] (-38309.349) (-38315.872) * (-38318.512) (-38304.484) (-38307.252) [-38316.685] -- 1:47:58
268000 -- (-38309.434) (-38301.940) [-38297.111] (-38310.243) * (-38311.648) [-38304.577] (-38314.679) (-38305.624) -- 1:47:50
269000 -- [-38303.549] (-38307.742) (-38313.832) (-38319.977) * [-38300.514] (-38303.942) (-38310.118) (-38314.676) -- 1:47:42
270000 -- [-38297.552] (-38299.501) (-38308.921) (-38315.726) * (-38305.458) (-38316.313) (-38318.812) [-38307.451] -- 1:47:33
Average standard deviation of split frequencies: 0.003810
271000 -- (-38301.583) (-38301.034) (-38300.337) [-38307.783] * (-38301.643) (-38310.883) (-38305.677) [-38307.355] -- 1:47:25
272000 -- (-38305.610) (-38315.410) [-38304.577] (-38307.506) * (-38301.820) (-38310.553) (-38309.672) [-38309.766] -- 1:47:16
273000 -- [-38306.258] (-38309.888) (-38314.239) (-38300.901) * [-38304.386] (-38307.706) (-38307.890) (-38304.642) -- 1:47:08
274000 -- (-38305.070) (-38302.628) [-38307.863] (-38310.068) * (-38298.156) (-38313.688) [-38304.684] (-38321.947) -- 1:47:00
275000 -- (-38312.997) [-38296.536] (-38315.980) (-38308.449) * (-38309.079) (-38308.947) (-38314.398) [-38310.597] -- 1:46:51
Average standard deviation of split frequencies: 0.003629
276000 -- (-38299.948) [-38302.156] (-38317.301) (-38314.719) * (-38314.020) (-38307.944) [-38299.808] (-38302.317) -- 1:46:43
277000 -- (-38314.701) [-38301.702] (-38304.652) (-38312.233) * (-38305.285) (-38308.523) [-38304.252] (-38309.006) -- 1:46:34
278000 -- [-38307.393] (-38308.876) (-38308.904) (-38306.706) * (-38318.587) [-38297.946] (-38304.419) (-38313.470) -- 1:46:26
279000 -- (-38307.091) (-38303.195) (-38303.080) [-38309.767] * (-38316.907) [-38304.697] (-38298.222) (-38308.250) -- 1:46:15
280000 -- (-38308.760) (-38303.160) [-38302.691] (-38308.574) * (-38308.404) (-38313.947) [-38301.280] (-38310.120) -- 1:46:06
Average standard deviation of split frequencies: 0.003254
281000 -- (-38307.940) (-38295.268) [-38301.645] (-38312.122) * (-38311.666) (-38321.645) (-38312.503) [-38306.763] -- 1:45:58
282000 -- (-38309.725) [-38308.418] (-38296.987) (-38301.719) * (-38305.904) (-38309.556) [-38304.742] (-38317.442) -- 1:45:49
283000 -- (-38299.501) [-38305.104] (-38305.800) (-38309.166) * (-38303.257) [-38300.405] (-38314.316) (-38309.610) -- 1:45:41
284000 -- (-38303.356) [-38303.608] (-38310.089) (-38300.768) * (-38303.610) [-38308.802] (-38304.320) (-38308.448) -- 1:45:33
285000 -- (-38311.604) [-38304.639] (-38310.379) (-38300.222) * (-38309.374) (-38298.546) [-38300.923] (-38307.524) -- 1:45:24
Average standard deviation of split frequencies: 0.002987
286000 -- [-38300.762] (-38297.670) (-38298.214) (-38301.377) * (-38313.845) (-38307.626) (-38310.393) [-38306.104] -- 1:45:16
287000 -- (-38302.586) (-38300.457) [-38294.375] (-38314.807) * (-38304.495) (-38305.198) [-38297.855] (-38302.362) -- 1:45:07
288000 -- (-38315.983) (-38304.122) [-38296.879] (-38305.360) * [-38298.066] (-38301.162) (-38300.285) (-38307.197) -- 1:44:56
289000 -- (-38313.606) [-38298.614] (-38299.930) (-38317.128) * (-38297.736) [-38307.228] (-38309.062) (-38303.844) -- 1:44:48
290000 -- [-38305.417] (-38305.685) (-38303.049) (-38312.609) * (-38306.050) [-38303.411] (-38313.649) (-38305.755) -- 1:44:39
Average standard deviation of split frequencies: 0.002230
291000 -- (-38303.206) [-38299.714] (-38313.325) (-38311.906) * [-38304.777] (-38318.224) (-38301.887) (-38302.826) -- 1:44:31
292000 -- (-38304.448) (-38307.340) (-38325.859) [-38309.558] * [-38307.486] (-38310.201) (-38303.095) (-38306.219) -- 1:44:22
293000 -- [-38301.738] (-38301.744) (-38302.994) (-38301.131) * (-38308.951) (-38306.839) [-38310.155] (-38305.130) -- 1:44:14
294000 -- (-38297.004) (-38302.609) (-38311.430) [-38303.989] * [-38305.008] (-38309.081) (-38311.959) (-38300.925) -- 1:44:05
295000 -- (-38310.233) (-38304.126) (-38314.081) [-38300.838] * (-38298.299) [-38302.854] (-38314.539) (-38301.874) -- 1:43:57
Average standard deviation of split frequencies: 0.001095
296000 -- (-38304.071) (-38324.730) (-38304.698) [-38305.018] * (-38308.850) (-38302.407) [-38305.678] (-38324.961) -- 1:43:48
297000 -- (-38309.920) (-38303.463) [-38297.117] (-38307.094) * (-38314.723) (-38310.371) [-38308.292] (-38316.205) -- 1:43:40
298000 -- [-38302.229] (-38307.865) (-38317.453) (-38315.678) * (-38306.505) (-38307.031) [-38303.144] (-38309.665) -- 1:43:31
299000 -- [-38300.024] (-38302.912) (-38317.251) (-38321.762) * (-38303.478) [-38308.079] (-38310.496) (-38305.215) -- 1:43:23
300000 -- (-38301.529) [-38299.900] (-38308.704) (-38316.024) * (-38310.745) (-38303.328) (-38309.533) [-38304.157] -- 1:43:12
Average standard deviation of split frequencies: 0.000490
301000 -- [-38294.396] (-38304.422) (-38317.267) (-38314.619) * (-38302.215) [-38303.471] (-38315.480) (-38308.483) -- 1:43:04
302000 -- (-38303.030) (-38315.163) [-38309.702] (-38324.673) * [-38310.119] (-38302.359) (-38314.004) (-38308.730) -- 1:42:55
303000 -- (-38300.574) (-38311.481) [-38306.515] (-38313.485) * (-38317.751) (-38309.802) [-38312.917] (-38309.447) -- 1:42:47
304000 -- (-38303.483) [-38310.122] (-38310.397) (-38310.643) * (-38315.603) (-38310.794) (-38311.263) [-38304.483] -- 1:42:38
305000 -- [-38307.620] (-38315.836) (-38306.452) (-38318.711) * (-38306.041) (-38303.787) (-38301.507) [-38302.774] -- 1:42:30
Average standard deviation of split frequencies: 0.000193
306000 -- (-38316.547) (-38315.405) [-38301.427] (-38319.358) * (-38297.873) [-38306.154] (-38307.585) (-38305.761) -- 1:42:21
307000 -- (-38314.123) [-38303.570] (-38298.791) (-38311.721) * [-38297.526] (-38312.937) (-38308.166) (-38302.941) -- 1:42:10
308000 -- (-38307.214) [-38303.217] (-38306.794) (-38303.448) * (-38303.273) (-38311.426) [-38307.287] (-38310.989) -- 1:42:02
309000 -- (-38315.564) (-38303.093) (-38308.256) [-38309.272] * (-38309.502) (-38323.316) (-38309.012) [-38303.585] -- 1:41:53
310000 -- (-38315.342) [-38309.043] (-38309.023) (-38306.848) * (-38312.722) (-38305.479) [-38310.392] (-38310.995) -- 1:41:45
Average standard deviation of split frequencies: 0.000190
311000 -- (-38309.626) [-38300.236] (-38316.144) (-38304.835) * (-38300.555) [-38299.101] (-38318.624) (-38304.866) -- 1:41:36
312000 -- (-38317.916) (-38302.133) [-38311.753] (-38303.121) * [-38309.137] (-38310.284) (-38312.956) (-38302.503) -- 1:41:26
313000 -- [-38309.126] (-38307.803) (-38316.197) (-38298.567) * [-38305.250] (-38307.247) (-38306.094) (-38311.560) -- 1:41:17
314000 -- (-38303.093) (-38309.409) [-38298.680] (-38307.609) * (-38305.820) (-38301.587) [-38302.837] (-38305.195) -- 1:41:09
315000 -- [-38310.258] (-38310.023) (-38300.398) (-38304.629) * [-38308.596] (-38307.061) (-38297.512) (-38323.423) -- 1:41:00
Average standard deviation of split frequencies: 0.001119
316000 -- (-38304.406) (-38315.900) [-38296.257] (-38302.901) * (-38304.574) (-38311.470) [-38298.862] (-38311.683) -- 1:40:52
317000 -- (-38306.417) (-38312.429) [-38306.518] (-38304.429) * (-38306.242) (-38306.857) [-38295.008] (-38305.423) -- 1:40:43
318000 -- (-38308.942) (-38314.732) [-38303.210] (-38314.210) * [-38299.882] (-38311.373) (-38304.991) (-38305.371) -- 1:40:35
319000 -- [-38303.939] (-38304.043) (-38310.546) (-38314.521) * (-38302.740) (-38309.271) (-38305.634) [-38297.601] -- 1:40:24
320000 -- (-38302.541) (-38305.719) (-38305.226) [-38298.448] * (-38311.125) (-38310.379) [-38306.883] (-38301.315) -- 1:40:15
Average standard deviation of split frequencies: 0.000919
321000 -- (-38305.803) (-38322.801) (-38305.807) [-38302.990] * (-38302.271) (-38308.810) (-38306.147) [-38307.071] -- 1:40:07
322000 -- [-38309.509] (-38326.862) (-38311.379) (-38297.476) * [-38309.370] (-38300.921) (-38297.535) (-38303.443) -- 1:39:58
323000 -- (-38308.359) (-38315.692) (-38316.229) [-38299.818] * [-38306.403] (-38298.543) (-38314.044) (-38308.504) -- 1:39:50
324000 -- [-38311.363] (-38309.410) (-38309.714) (-38308.320) * (-38309.784) (-38297.962) [-38306.089] (-38321.395) -- 1:39:41
325000 -- [-38297.759] (-38317.461) (-38313.863) (-38299.854) * (-38309.480) [-38303.233] (-38313.104) (-38311.351) -- 1:39:33
Average standard deviation of split frequencies: 0.001265
326000 -- (-38312.447) (-38304.237) [-38296.692] (-38304.355) * (-38314.465) [-38303.310] (-38323.682) (-38305.342) -- 1:39:24
327000 -- (-38302.158) (-38304.325) (-38304.662) [-38303.412] * (-38311.716) (-38307.649) (-38303.120) [-38299.927] -- 1:39:16
328000 -- (-38305.448) (-38310.441) (-38309.511) [-38298.484] * (-38307.580) [-38301.515] (-38303.647) (-38305.494) -- 1:39:07
329000 -- (-38311.132) (-38315.781) (-38312.060) [-38303.931] * (-38315.233) [-38300.239] (-38304.531) (-38317.036) -- 1:38:57
330000 -- [-38303.133] (-38312.013) (-38315.017) (-38309.538) * (-38302.803) [-38297.487] (-38300.259) (-38314.607) -- 1:38:48
Average standard deviation of split frequencies: 0.001426
331000 -- [-38298.041] (-38304.615) (-38308.627) (-38316.096) * (-38306.390) [-38299.252] (-38300.733) (-38316.295) -- 1:38:39
332000 -- [-38300.823] (-38311.962) (-38304.886) (-38300.096) * [-38305.107] (-38297.720) (-38311.101) (-38307.401) -- 1:38:31
333000 -- [-38307.023] (-38307.929) (-38303.307) (-38305.110) * (-38310.537) (-38298.575) [-38309.939] (-38311.781) -- 1:38:20
334000 -- (-38316.044) (-38314.853) (-38318.043) [-38308.928] * (-38303.682) (-38301.919) [-38304.978] (-38311.877) -- 1:38:12
335000 -- (-38308.381) [-38311.515] (-38315.234) (-38314.252) * (-38299.056) (-38313.103) (-38304.614) [-38302.301] -- 1:38:03
Average standard deviation of split frequencies: 0.001754
336000 -- (-38315.313) (-38308.697) [-38307.606] (-38306.643) * [-38300.275] (-38306.653) (-38303.018) (-38309.666) -- 1:37:55
337000 -- (-38309.398) (-38303.650) (-38307.348) [-38301.451] * (-38299.585) (-38308.654) [-38299.078] (-38312.860) -- 1:37:46
338000 -- (-38307.874) (-38302.655) (-38316.891) [-38297.820] * (-38306.627) (-38302.933) [-38306.400] (-38306.150) -- 1:37:38
339000 -- (-38309.591) (-38312.675) (-38318.235) [-38301.570] * (-38317.482) [-38309.141] (-38312.139) (-38314.171) -- 1:37:27
340000 -- (-38304.784) (-38304.467) (-38296.853) [-38296.467] * (-38299.390) (-38314.557) [-38313.811] (-38301.550) -- 1:37:19
Average standard deviation of split frequencies: 0.001297
341000 -- (-38310.199) (-38308.539) (-38302.262) [-38297.775] * (-38303.964) [-38298.910] (-38314.964) (-38317.837) -- 1:37:10
342000 -- (-38299.661) (-38310.233) (-38306.802) [-38302.166] * (-38299.699) (-38304.755) [-38302.553] (-38324.844) -- 1:37:01
343000 -- (-38314.806) (-38304.472) (-38309.110) [-38301.297] * (-38308.642) [-38294.669] (-38313.613) (-38304.914) -- 1:36:53
344000 -- [-38304.762] (-38307.424) (-38306.624) (-38314.887) * (-38310.859) [-38301.256] (-38313.182) (-38303.438) -- 1:36:44
345000 -- (-38315.810) (-38314.957) (-38309.854) [-38301.275] * (-38299.692) (-38317.939) [-38301.007] (-38315.272) -- 1:36:36
Average standard deviation of split frequencies: 0.000766
346000 -- [-38305.376] (-38303.012) (-38317.676) (-38306.407) * (-38302.659) (-38299.272) [-38303.634] (-38310.273) -- 1:36:25
347000 -- (-38307.997) [-38314.959] (-38312.575) (-38311.524) * (-38303.382) (-38299.547) [-38299.247] (-38314.519) -- 1:36:17
348000 -- (-38301.056) [-38304.950] (-38313.597) (-38302.095) * (-38301.680) [-38300.737] (-38316.133) (-38304.383) -- 1:36:08
349000 -- (-38304.507) [-38299.171] (-38304.513) (-38315.491) * (-38302.079) (-38307.161) (-38311.358) [-38303.974] -- 1:36:00
350000 -- (-38318.328) [-38303.922] (-38309.777) (-38313.404) * (-38313.873) (-38313.127) (-38305.440) [-38300.814] -- 1:35:49
Average standard deviation of split frequencies: 0.000504
351000 -- (-38315.935) [-38304.118] (-38301.088) (-38305.656) * [-38311.054] (-38305.822) (-38301.970) (-38305.856) -- 1:35:41
352000 -- [-38299.093] (-38305.301) (-38307.939) (-38310.113) * (-38298.257) [-38303.237] (-38301.776) (-38307.883) -- 1:35:32
353000 -- (-38309.880) (-38315.779) [-38301.137] (-38311.034) * (-38312.634) (-38307.833) [-38305.025] (-38308.870) -- 1:35:24
354000 -- (-38311.624) (-38310.802) (-38301.564) [-38301.564] * (-38304.809) (-38303.423) (-38318.706) [-38301.926] -- 1:35:15
355000 -- [-38309.020] (-38302.517) (-38312.059) (-38306.190) * (-38301.111) (-38302.644) (-38301.634) [-38305.810] -- 1:35:05
Average standard deviation of split frequencies: 0.000497
356000 -- (-38306.495) (-38301.398) (-38316.036) [-38307.064] * (-38306.829) (-38306.163) (-38315.024) [-38303.632] -- 1:34:56
357000 -- [-38313.048] (-38306.065) (-38312.319) (-38315.601) * (-38314.014) (-38297.234) [-38305.079] (-38303.303) -- 1:34:47
358000 -- (-38316.839) (-38308.386) [-38309.598] (-38313.839) * [-38313.272] (-38300.117) (-38305.644) (-38308.354) -- 1:34:39
359000 -- (-38320.777) (-38306.908) (-38311.760) [-38303.075] * (-38317.252) [-38302.478] (-38308.118) (-38306.422) -- 1:34:30
360000 -- (-38301.660) [-38310.432] (-38300.281) (-38308.913) * (-38315.316) (-38305.847) [-38301.369] (-38317.332) -- 1:34:22
Average standard deviation of split frequencies: 0.000735
361000 -- (-38299.089) (-38304.582) [-38306.495] (-38311.300) * [-38297.655] (-38302.882) (-38314.240) (-38312.669) -- 1:34:13
362000 -- (-38295.688) [-38298.995] (-38317.849) (-38310.648) * (-38310.339) [-38309.023] (-38307.499) (-38303.169) -- 1:34:05
363000 -- (-38299.153) (-38315.005) (-38314.443) [-38300.527] * (-38324.902) [-38305.582] (-38301.985) (-38294.663) -- 1:33:56
364000 -- (-38307.694) (-38303.489) (-38302.363) [-38309.711] * (-38310.262) (-38311.762) (-38304.427) [-38302.748] -- 1:33:47
365000 -- (-38296.724) [-38303.890] (-38303.575) (-38314.678) * (-38304.130) (-38329.843) [-38297.848] (-38304.818) -- 1:33:39
Average standard deviation of split frequencies: 0.001207
366000 -- (-38313.972) (-38302.542) (-38305.027) [-38306.703] * [-38307.375] (-38307.104) (-38302.453) (-38303.465) -- 1:33:30
367000 -- (-38304.482) (-38311.539) [-38300.972] (-38303.448) * [-38308.707] (-38309.075) (-38301.145) (-38316.055) -- 1:33:20
368000 -- [-38302.139] (-38295.532) (-38301.980) (-38316.099) * (-38315.933) (-38305.633) [-38311.118] (-38312.871) -- 1:33:11
369000 -- [-38302.161] (-38307.334) (-38312.468) (-38302.324) * [-38301.511] (-38308.856) (-38302.821) (-38306.836) -- 1:33:03
370000 -- (-38310.353) (-38312.238) [-38309.361] (-38311.015) * (-38301.143) [-38302.960] (-38312.492) (-38306.674) -- 1:32:54
Average standard deviation of split frequencies: 0.001510
371000 -- [-38307.540] (-38314.384) (-38313.191) (-38308.183) * (-38305.288) [-38308.375] (-38311.140) (-38311.863) -- 1:32:46
372000 -- (-38304.988) (-38311.495) [-38301.223] (-38308.189) * (-38311.062) [-38303.367] (-38311.722) (-38307.791) -- 1:32:37
373000 -- (-38301.885) (-38307.934) [-38311.064] (-38317.437) * (-38303.507) (-38314.956) [-38303.095] (-38299.535) -- 1:32:28
374000 -- (-38309.624) (-38299.796) [-38304.646] (-38314.247) * [-38305.551] (-38298.486) (-38303.609) (-38299.720) -- 1:32:20
375000 -- [-38303.935] (-38308.935) (-38303.582) (-38309.453) * (-38307.593) (-38304.128) [-38304.627] (-38307.222) -- 1:32:11
Average standard deviation of split frequencies: 0.001724
376000 -- (-38311.731) [-38301.821] (-38304.480) (-38303.451) * (-38305.016) (-38314.733) [-38308.891] (-38304.089) -- 1:32:03
377000 -- (-38314.709) (-38312.203) (-38311.078) [-38305.474] * (-38314.774) (-38310.004) (-38306.709) [-38306.048] -- 1:31:54
378000 -- (-38308.065) (-38312.093) [-38305.678] (-38308.281) * (-38307.813) [-38303.135] (-38307.340) (-38316.010) -- 1:31:45
379000 -- (-38307.280) (-38304.871) [-38305.177] (-38313.320) * [-38297.625] (-38300.083) (-38311.614) (-38310.379) -- 1:31:37
380000 -- (-38309.449) (-38310.445) [-38311.104] (-38314.956) * (-38305.156) [-38299.493] (-38305.199) (-38300.473) -- 1:31:27
Average standard deviation of split frequencies: 0.001625
381000 -- [-38315.699] (-38306.866) (-38304.239) (-38304.899) * (-38307.145) (-38325.971) (-38303.967) [-38295.553] -- 1:31:18
382000 -- [-38304.221] (-38311.298) (-38304.375) (-38312.754) * [-38302.870] (-38318.838) (-38315.579) (-38303.773) -- 1:31:09
383000 -- [-38309.006] (-38300.531) (-38306.232) (-38318.029) * (-38307.310) (-38296.673) (-38314.960) [-38305.177] -- 1:31:01
384000 -- [-38302.874] (-38301.907) (-38307.266) (-38331.028) * (-38307.527) (-38309.062) [-38302.914] (-38313.572) -- 1:30:52
385000 -- (-38308.518) (-38310.625) (-38300.765) [-38308.991] * [-38304.346] (-38312.617) (-38308.554) (-38313.044) -- 1:30:43
Average standard deviation of split frequencies: 0.001679
386000 -- (-38309.044) (-38303.975) [-38300.574] (-38309.870) * (-38314.425) (-38305.914) (-38309.451) [-38301.653] -- 1:30:35
387000 -- [-38308.056] (-38312.658) (-38305.793) (-38315.724) * [-38311.228] (-38307.303) (-38315.565) (-38302.853) -- 1:30:26
388000 -- [-38313.936] (-38310.413) (-38307.512) (-38303.515) * (-38324.426) [-38308.993] (-38306.836) (-38308.435) -- 1:30:16
389000 -- [-38307.485] (-38304.154) (-38301.792) (-38319.189) * (-38312.470) (-38311.298) [-38296.563] (-38308.191) -- 1:30:07
390000 -- (-38299.202) [-38305.972] (-38308.258) (-38304.746) * (-38312.896) (-38312.180) [-38301.860] (-38304.245) -- 1:29:59
Average standard deviation of split frequencies: 0.001358
391000 -- (-38309.951) (-38322.191) (-38299.430) [-38310.210] * (-38313.790) (-38326.305) [-38300.426] (-38315.993) -- 1:29:50
392000 -- (-38306.299) (-38311.349) [-38302.787] (-38306.762) * (-38305.597) (-38317.185) [-38301.770] (-38312.929) -- 1:29:42
393000 -- [-38307.809] (-38308.858) (-38303.262) (-38307.858) * (-38311.339) [-38299.355] (-38296.317) (-38310.151) -- 1:29:33
394000 -- (-38303.237) (-38319.940) (-38310.751) [-38300.982] * [-38305.038] (-38316.257) (-38308.494) (-38314.880) -- 1:29:24
395000 -- (-38311.109) (-38323.545) [-38311.727] (-38304.876) * (-38312.098) [-38307.124] (-38310.191) (-38310.419) -- 1:29:16
Average standard deviation of split frequencies: 0.001116
396000 -- (-38310.316) (-38310.207) (-38307.503) [-38303.853] * (-38315.326) [-38307.313] (-38303.310) (-38302.581) -- 1:29:07
397000 -- (-38313.196) (-38308.831) [-38299.609] (-38297.924) * (-38307.098) (-38303.375) [-38308.446] (-38301.944) -- 1:28:58
398000 -- (-38312.536) [-38301.875] (-38308.104) (-38311.871) * (-38318.552) [-38305.595] (-38317.602) (-38300.918) -- 1:28:50
399000 -- (-38306.429) [-38309.859] (-38308.712) (-38311.891) * (-38312.866) [-38303.423] (-38314.392) (-38304.098) -- 1:28:41
400000 -- (-38305.908) [-38306.900] (-38302.760) (-38308.004) * (-38310.031) [-38304.167] (-38316.843) (-38305.467) -- 1:28:31
Average standard deviation of split frequencies: 0.001250
401000 -- (-38314.691) (-38306.745) (-38301.703) [-38308.996] * (-38307.315) (-38307.906) (-38306.148) [-38303.816] -- 1:28:22
402000 -- (-38303.404) (-38315.881) [-38306.693] (-38302.025) * (-38318.716) (-38293.457) [-38306.028] (-38308.210) -- 1:28:14
403000 -- [-38304.979] (-38321.923) (-38301.704) (-38313.982) * (-38301.549) [-38304.213] (-38308.036) (-38309.718) -- 1:28:05
404000 -- (-38308.152) (-38312.652) [-38311.637] (-38311.019) * (-38303.720) [-38299.939] (-38307.667) (-38311.245) -- 1:27:56
405000 -- (-38309.427) [-38304.786] (-38318.382) (-38307.600) * (-38307.795) (-38297.698) (-38313.633) [-38307.193] -- 1:27:48
Average standard deviation of split frequencies: 0.001234
406000 -- (-38304.114) (-38308.181) (-38308.669) [-38303.542] * (-38315.299) [-38301.504] (-38307.818) (-38305.649) -- 1:27:39
407000 -- (-38308.881) (-38305.104) (-38310.918) [-38302.459] * (-38307.491) (-38300.140) [-38304.601] (-38302.536) -- 1:27:31
408000 -- [-38308.448] (-38318.301) (-38318.268) (-38310.815) * (-38318.039) (-38300.900) [-38303.428] (-38321.910) -- 1:27:22
409000 -- (-38302.999) [-38306.409] (-38315.608) (-38312.001) * (-38315.410) (-38310.376) (-38301.250) [-38303.001] -- 1:27:13
410000 -- (-38303.139) (-38302.836) (-38305.801) [-38301.079] * (-38317.621) (-38300.447) (-38314.776) [-38302.024] -- 1:27:05
Average standard deviation of split frequencies: 0.001291
411000 -- (-38313.729) [-38305.602] (-38328.414) (-38316.823) * (-38312.561) (-38309.184) (-38303.294) [-38296.867] -- 1:26:56
412000 -- [-38306.822] (-38313.694) (-38320.615) (-38302.942) * (-38310.746) (-38303.964) (-38310.896) [-38298.940] -- 1:26:47
413000 -- (-38307.497) (-38314.021) [-38303.703] (-38296.272) * (-38323.851) (-38317.372) [-38299.824] (-38310.222) -- 1:26:39
414000 -- (-38309.694) (-38310.289) (-38309.925) [-38305.709] * (-38309.316) (-38300.900) [-38299.591] (-38310.648) -- 1:26:30
415000 -- (-38311.060) (-38319.279) (-38315.871) [-38300.437] * (-38299.610) [-38304.525] (-38311.334) (-38314.651) -- 1:26:21
Average standard deviation of split frequencies: 0.001275
416000 -- (-38306.945) [-38297.035] (-38307.459) (-38300.986) * (-38318.284) [-38295.519] (-38313.525) (-38311.206) -- 1:26:13
417000 -- (-38310.619) (-38301.332) [-38310.139] (-38306.597) * (-38307.177) [-38315.348] (-38304.870) (-38299.750) -- 1:26:04
418000 -- [-38297.483] (-38299.474) (-38309.588) (-38304.858) * (-38313.464) (-38307.009) [-38298.561] (-38307.401) -- 1:25:54
419000 -- (-38308.617) [-38306.468] (-38307.475) (-38306.320) * (-38307.934) (-38313.568) [-38304.025] (-38312.793) -- 1:25:45
420000 -- (-38311.731) (-38319.657) (-38307.363) [-38316.389] * (-38309.030) (-38306.377) [-38306.554] (-38301.229) -- 1:25:37
Average standard deviation of split frequencies: 0.000747
421000 -- (-38307.660) (-38311.719) (-38304.776) [-38305.631] * [-38305.041] (-38305.975) (-38310.749) (-38299.478) -- 1:25:28
422000 -- (-38314.365) [-38310.850] (-38313.503) (-38309.668) * (-38312.455) [-38304.941] (-38313.066) (-38302.781) -- 1:25:19
423000 -- (-38303.049) (-38303.263) [-38295.313] (-38311.307) * [-38303.349] (-38315.867) (-38310.328) (-38307.778) -- 1:25:11
424000 -- (-38310.503) (-38301.264) [-38296.056] (-38308.490) * (-38302.583) (-38318.520) [-38297.850] (-38306.847) -- 1:25:02
425000 -- (-38307.947) (-38311.103) [-38301.863] (-38307.303) * [-38309.302] (-38321.002) (-38309.476) (-38307.634) -- 1:24:53
Average standard deviation of split frequencies: 0.000811
426000 -- (-38331.485) (-38318.369) (-38305.174) [-38316.751] * (-38309.415) [-38304.279] (-38301.548) (-38310.176) -- 1:24:45
427000 -- (-38312.877) (-38309.961) (-38310.279) [-38309.256] * [-38305.290] (-38300.564) (-38304.503) (-38303.119) -- 1:24:36
428000 -- (-38317.121) (-38301.156) [-38306.044] (-38303.482) * (-38308.747) (-38310.678) (-38306.090) [-38305.948] -- 1:24:27
429000 -- (-38313.311) [-38303.502] (-38302.048) (-38308.913) * [-38301.994] (-38322.719) (-38307.441) (-38297.259) -- 1:24:19
430000 -- (-38311.876) (-38313.231) [-38297.047] (-38307.902) * [-38299.033] (-38313.618) (-38306.282) (-38311.803) -- 1:24:10
Average standard deviation of split frequencies: 0.001022
431000 -- (-38307.278) [-38304.521] (-38306.944) (-38307.805) * (-38304.346) (-38307.441) [-38299.743] (-38306.006) -- 1:24:01
432000 -- (-38303.031) (-38309.974) [-38299.127] (-38309.290) * [-38316.459] (-38324.987) (-38306.284) (-38303.106) -- 1:23:51
433000 -- (-38306.887) (-38303.300) (-38308.249) [-38312.550] * (-38303.853) [-38311.741] (-38305.076) (-38306.051) -- 1:23:43
434000 -- [-38301.883] (-38308.881) (-38306.909) (-38302.963) * (-38300.645) (-38309.656) [-38313.203] (-38321.620) -- 1:23:34
435000 -- (-38307.770) (-38309.123) [-38304.982] (-38313.701) * [-38302.423] (-38297.589) (-38316.765) (-38313.471) -- 1:23:25
Average standard deviation of split frequencies: 0.001009
436000 -- (-38306.080) (-38302.641) [-38304.359] (-38296.820) * (-38300.860) (-38302.965) [-38306.022] (-38321.702) -- 1:23:17
437000 -- (-38308.890) (-38319.035) (-38308.872) [-38298.173] * [-38296.713] (-38304.179) (-38306.195) (-38317.417) -- 1:23:08
438000 -- (-38311.889) (-38312.578) [-38312.347] (-38309.289) * (-38307.470) (-38308.218) (-38307.002) [-38313.870] -- 1:22:58
439000 -- (-38301.378) (-38321.534) [-38305.951] (-38306.742) * [-38310.935] (-38304.554) (-38306.042) (-38313.517) -- 1:22:49
440000 -- [-38303.765] (-38306.071) (-38302.051) (-38318.024) * [-38312.982] (-38304.409) (-38311.898) (-38319.950) -- 1:22:41
Average standard deviation of split frequencies: 0.001070
441000 -- [-38304.612] (-38301.073) (-38307.060) (-38309.041) * (-38312.555) (-38312.319) [-38298.793] (-38311.529) -- 1:22:32
442000 -- (-38302.544) [-38301.386] (-38315.497) (-38303.053) * (-38300.954) (-38310.799) [-38300.541] (-38306.831) -- 1:22:23
443000 -- [-38299.218] (-38309.788) (-38311.911) (-38301.691) * (-38297.978) (-38314.073) [-38302.818] (-38310.167) -- 1:22:15
444000 -- (-38301.531) [-38305.107] (-38308.284) (-38300.128) * (-38310.495) (-38313.306) [-38301.479] (-38320.017) -- 1:22:06
445000 -- (-38311.795) (-38303.436) (-38307.997) [-38311.976] * [-38298.276] (-38303.384) (-38302.800) (-38307.909) -- 1:21:56
Average standard deviation of split frequencies: 0.001718
446000 -- [-38305.491] (-38309.585) (-38313.003) (-38301.505) * [-38300.303] (-38311.973) (-38308.783) (-38310.366) -- 1:21:47
447000 -- [-38298.455] (-38297.327) (-38311.196) (-38310.659) * (-38314.689) [-38315.715] (-38308.868) (-38314.447) -- 1:21:39
448000 -- (-38301.777) [-38299.734] (-38309.309) (-38311.992) * [-38310.268] (-38327.815) (-38310.823) (-38313.678) -- 1:21:30
449000 -- (-38305.295) (-38300.716) [-38313.776] (-38318.485) * (-38317.885) (-38305.065) (-38304.047) [-38310.898] -- 1:21:20
450000 -- (-38303.728) [-38309.769] (-38311.336) (-38308.855) * [-38301.844] (-38305.331) (-38301.578) (-38306.896) -- 1:21:11
Average standard deviation of split frequencies: 0.001700
451000 -- [-38307.473] (-38306.815) (-38310.459) (-38301.107) * [-38301.804] (-38313.790) (-38304.611) (-38299.925) -- 1:21:03
452000 -- (-38302.029) [-38298.509] (-38309.050) (-38310.709) * (-38305.675) (-38332.015) [-38298.905] (-38303.680) -- 1:20:54
453000 -- (-38300.036) (-38307.093) (-38304.650) [-38310.567] * (-38309.361) [-38298.384] (-38316.240) (-38316.986) -- 1:20:45
454000 -- (-38299.428) [-38308.440] (-38307.695) (-38303.031) * (-38313.607) [-38318.538] (-38307.529) (-38299.086) -- 1:20:37
455000 -- [-38302.859] (-38310.640) (-38318.889) (-38302.377) * (-38311.235) (-38307.083) (-38301.550) [-38305.767] -- 1:20:28
Average standard deviation of split frequencies: 0.001421
456000 -- (-38315.336) (-38308.220) (-38317.953) [-38310.778] * (-38308.616) (-38310.304) [-38301.399] (-38308.368) -- 1:20:19
457000 -- (-38308.993) (-38312.296) [-38304.148] (-38302.006) * [-38303.470] (-38325.090) (-38298.744) (-38304.999) -- 1:20:09
458000 -- (-38304.020) (-38309.512) [-38311.848] (-38312.965) * (-38305.624) (-38310.711) (-38313.149) [-38304.220] -- 1:20:01
459000 -- (-38307.112) [-38305.639] (-38305.181) (-38315.954) * [-38298.832] (-38309.886) (-38307.230) (-38313.508) -- 1:19:52
460000 -- (-38306.462) [-38303.710] (-38303.650) (-38306.519) * [-38301.999] (-38316.247) (-38323.216) (-38307.519) -- 1:19:43
Average standard deviation of split frequencies: 0.001215
461000 -- (-38307.458) [-38313.059] (-38307.194) (-38307.092) * (-38307.092) (-38306.244) (-38300.429) [-38303.973] -- 1:19:35
462000 -- (-38315.592) [-38299.492] (-38315.088) (-38310.413) * (-38308.777) (-38309.197) (-38308.972) [-38299.758] -- 1:19:26
463000 -- [-38300.577] (-38298.775) (-38315.796) (-38300.642) * (-38308.188) (-38306.908) (-38321.573) [-38302.155] -- 1:19:17
464000 -- (-38299.124) [-38294.871] (-38304.600) (-38310.854) * (-38302.493) (-38308.388) (-38318.048) [-38297.767] -- 1:19:08
465000 -- (-38311.144) [-38303.265] (-38317.020) (-38325.087) * (-38300.872) [-38299.060] (-38309.141) (-38309.871) -- 1:18:59
Average standard deviation of split frequencies: 0.001201
466000 -- [-38302.806] (-38308.823) (-38316.348) (-38310.735) * (-38302.986) [-38305.648] (-38308.759) (-38321.432) -- 1:18:50
467000 -- (-38311.545) (-38307.201) [-38306.648] (-38302.940) * [-38305.028] (-38309.349) (-38306.351) (-38314.618) -- 1:18:41
468000 -- [-38309.008] (-38306.804) (-38299.681) (-38307.963) * [-38302.473] (-38317.958) (-38316.513) (-38301.520) -- 1:18:32
469000 -- (-38301.348) (-38305.832) [-38297.110] (-38303.379) * (-38299.473) [-38308.384] (-38305.498) (-38303.631) -- 1:18:24
470000 -- [-38302.077] (-38308.034) (-38298.244) (-38300.699) * [-38303.937] (-38306.189) (-38305.799) (-38300.678) -- 1:18:15
Average standard deviation of split frequencies: 0.001127
471000 -- (-38305.344) (-38309.340) (-38303.031) [-38301.213] * (-38310.810) (-38302.919) (-38318.088) [-38299.316] -- 1:18:06
472000 -- [-38300.747] (-38305.610) (-38307.055) (-38308.850) * (-38310.790) (-38308.923) (-38309.058) [-38302.298] -- 1:17:58
473000 -- (-38302.469) (-38301.722) (-38302.303) [-38305.989] * [-38306.423] (-38306.683) (-38308.716) (-38308.105) -- 1:17:49
474000 -- (-38315.368) [-38308.818] (-38322.683) (-38310.352) * (-38308.149) (-38309.660) (-38313.386) [-38299.376] -- 1:17:40
475000 -- [-38304.479] (-38297.974) (-38317.861) (-38306.073) * (-38300.079) (-38307.925) (-38312.035) [-38307.170] -- 1:17:30
Average standard deviation of split frequencies: 0.000681
476000 -- [-38299.418] (-38314.458) (-38308.493) (-38308.254) * [-38300.276] (-38313.455) (-38311.786) (-38305.048) -- 1:17:22
477000 -- (-38301.905) (-38310.317) (-38310.138) [-38303.843] * (-38299.882) (-38312.707) (-38312.999) [-38307.381] -- 1:17:13
478000 -- (-38303.223) (-38302.310) (-38307.400) [-38309.601] * (-38305.055) (-38313.464) (-38306.791) [-38300.015] -- 1:17:04
479000 -- (-38311.946) (-38303.352) (-38321.824) [-38306.028] * [-38305.539] (-38307.985) (-38317.674) (-38305.726) -- 1:16:56
480000 -- (-38296.966) (-38304.665) [-38302.956] (-38317.730) * [-38302.346] (-38310.179) (-38308.319) (-38313.530) -- 1:16:47
Average standard deviation of split frequencies: 0.000327
481000 -- (-38301.865) [-38306.245] (-38311.339) (-38304.420) * (-38300.692) (-38314.519) [-38308.057] (-38306.754) -- 1:16:38
482000 -- (-38302.877) (-38309.965) [-38304.383] (-38315.570) * [-38306.509] (-38320.250) (-38325.556) (-38313.696) -- 1:16:29
483000 -- (-38295.599) (-38309.575) (-38305.985) [-38305.528] * [-38310.328] (-38308.342) (-38302.133) (-38323.174) -- 1:16:21
484000 -- [-38301.554] (-38311.002) (-38307.432) (-38303.417) * (-38310.943) (-38308.914) (-38327.940) [-38315.913] -- 1:16:12
485000 -- [-38306.734] (-38304.742) (-38305.573) (-38303.240) * (-38309.297) [-38305.844] (-38323.813) (-38316.474) -- 1:16:03
Average standard deviation of split frequencies: 0.000388
486000 -- (-38305.518) (-38301.609) (-38314.324) [-38302.514] * (-38313.497) (-38304.058) (-38317.388) [-38301.179] -- 1:15:54
487000 -- [-38304.328] (-38308.552) (-38306.972) (-38300.653) * [-38302.835] (-38314.377) (-38321.372) (-38311.643) -- 1:15:45
488000 -- [-38302.800] (-38308.283) (-38307.328) (-38301.066) * [-38296.366] (-38322.982) (-38316.387) (-38302.717) -- 1:15:36
489000 -- (-38294.101) (-38302.700) (-38311.714) [-38301.139] * (-38302.194) [-38309.015] (-38319.079) (-38304.545) -- 1:15:27
490000 -- (-38308.105) (-38307.694) [-38305.142] (-38314.608) * (-38309.289) [-38307.500] (-38318.430) (-38306.279) -- 1:15:19
Average standard deviation of split frequencies: 0.000576
491000 -- (-38303.147) (-38302.486) [-38308.126] (-38307.987) * (-38311.675) (-38307.917) [-38308.978] (-38301.054) -- 1:15:10
492000 -- (-38329.084) (-38315.416) [-38303.212] (-38305.395) * (-38307.298) (-38307.486) (-38306.398) [-38306.125] -- 1:15:01
493000 -- (-38311.604) (-38319.254) [-38305.426] (-38307.290) * [-38318.138] (-38305.251) (-38311.970) (-38308.627) -- 1:14:53
494000 -- (-38310.990) (-38318.430) (-38295.974) [-38299.289] * (-38324.543) (-38309.609) [-38306.908] (-38298.243) -- 1:14:43
495000 -- (-38304.107) (-38309.643) (-38312.961) [-38297.717] * [-38309.311] (-38308.728) (-38310.740) (-38303.455) -- 1:14:34
Average standard deviation of split frequencies: 0.000380
496000 -- (-38301.065) (-38321.518) (-38299.721) [-38302.132] * [-38313.863] (-38308.777) (-38307.566) (-38303.746) -- 1:14:25
497000 -- (-38295.794) (-38309.986) (-38305.703) [-38305.122] * (-38314.195) [-38305.397] (-38319.044) (-38312.478) -- 1:14:17
498000 -- [-38295.974] (-38293.674) (-38317.212) (-38302.355) * (-38310.514) (-38310.412) (-38306.199) [-38305.339] -- 1:14:08
499000 -- (-38301.421) (-38307.635) (-38311.743) [-38306.818] * (-38314.539) (-38306.592) [-38311.694] (-38312.057) -- 1:13:59
500000 -- (-38305.840) (-38308.643) [-38308.013] (-38308.743) * (-38309.236) [-38307.480] (-38305.983) (-38311.887) -- 1:13:51
Average standard deviation of split frequencies: 0.000377
501000 -- [-38303.090] (-38304.464) (-38311.759) (-38308.625) * (-38308.276) [-38311.453] (-38307.177) (-38309.132) -- 1:13:42
502000 -- [-38301.792] (-38306.115) (-38305.317) (-38311.981) * (-38302.059) [-38310.478] (-38313.857) (-38307.136) -- 1:13:33
503000 -- (-38313.629) [-38302.431] (-38307.876) (-38314.327) * (-38305.361) (-38316.673) (-38311.375) [-38308.348] -- 1:13:23
504000 -- [-38308.806] (-38301.371) (-38300.889) (-38303.434) * [-38302.776] (-38302.518) (-38316.317) (-38305.365) -- 1:13:15
505000 -- (-38315.373) [-38304.121] (-38299.775) (-38307.086) * [-38302.340] (-38310.427) (-38311.660) (-38312.383) -- 1:13:06
Average standard deviation of split frequencies: 0.000497
506000 -- (-38310.684) (-38305.530) [-38300.075] (-38304.737) * [-38304.745] (-38316.331) (-38318.355) (-38310.491) -- 1:12:57
507000 -- [-38304.403] (-38300.658) (-38303.916) (-38305.955) * [-38305.335] (-38304.391) (-38311.496) (-38306.529) -- 1:12:47
508000 -- (-38301.626) (-38303.190) [-38295.074] (-38305.608) * (-38303.671) (-38302.749) (-38310.665) [-38307.115] -- 1:12:39
509000 -- (-38307.480) (-38304.190) [-38305.276] (-38314.769) * (-38308.173) [-38304.762] (-38315.694) (-38303.950) -- 1:12:30
510000 -- (-38304.946) (-38310.771) [-38298.658] (-38301.410) * (-38305.121) (-38307.129) (-38312.836) [-38305.960] -- 1:12:21
Average standard deviation of split frequencies: 0.000615
511000 -- (-38310.348) [-38301.840] (-38306.326) (-38311.793) * (-38315.431) [-38306.623] (-38310.414) (-38305.411) -- 1:12:13
512000 -- (-38313.475) [-38302.169] (-38302.574) (-38314.820) * (-38308.674) [-38304.312] (-38300.386) (-38308.629) -- 1:12:04
513000 -- (-38301.998) [-38303.450] (-38299.995) (-38302.130) * (-38315.644) (-38302.540) (-38316.235) [-38297.889] -- 1:11:55
514000 -- [-38292.750] (-38311.614) (-38299.706) (-38312.062) * (-38312.716) (-38305.027) (-38308.185) [-38301.343] -- 1:11:46
515000 -- (-38301.510) (-38312.425) [-38296.713] (-38307.362) * (-38308.597) (-38315.992) [-38298.714] (-38311.828) -- 1:11:38
Average standard deviation of split frequencies: 0.000609
516000 -- (-38299.874) (-38313.651) (-38301.393) [-38304.201] * (-38308.653) (-38310.145) (-38305.891) [-38301.783] -- 1:11:29
517000 -- [-38296.647] (-38309.353) (-38302.991) (-38309.290) * (-38304.774) (-38304.081) [-38303.527] (-38306.243) -- 1:11:20
518000 -- [-38297.163] (-38305.509) (-38314.181) (-38307.404) * (-38305.145) (-38312.060) [-38298.802] (-38333.368) -- 1:11:11
519000 -- (-38302.799) [-38297.820] (-38313.298) (-38308.476) * (-38314.795) (-38310.977) (-38318.011) [-38301.560] -- 1:11:02
520000 -- (-38305.851) (-38307.406) (-38307.319) [-38306.695] * [-38312.598] (-38305.786) (-38317.387) (-38304.203) -- 1:10:53
Average standard deviation of split frequencies: 0.000724
521000 -- (-38313.675) (-38311.664) (-38302.592) [-38307.661] * (-38307.488) (-38302.512) (-38313.112) [-38307.822] -- 1:10:44
522000 -- [-38297.502] (-38320.386) (-38313.401) (-38302.585) * [-38297.053] (-38308.710) (-38315.147) (-38303.622) -- 1:10:36
523000 -- (-38297.074) [-38304.773] (-38314.291) (-38314.736) * [-38298.932] (-38298.883) (-38297.954) (-38316.722) -- 1:10:27
524000 -- (-38306.189) [-38305.698] (-38306.356) (-38311.505) * (-38309.206) (-38310.366) (-38303.625) [-38310.852] -- 1:10:18
525000 -- (-38308.775) (-38308.379) [-38301.741] (-38305.324) * (-38310.086) [-38303.622] (-38304.894) (-38303.771) -- 1:10:09
Average standard deviation of split frequencies: 0.000777
526000 -- [-38305.447] (-38301.927) (-38313.925) (-38316.292) * (-38298.601) (-38317.370) [-38298.990] (-38309.528) -- 1:10:01
527000 -- (-38306.480) (-38300.636) (-38302.388) [-38304.178] * (-38311.192) (-38311.305) [-38297.846] (-38309.285) -- 1:09:51
528000 -- [-38305.874] (-38307.020) (-38310.642) (-38305.475) * (-38304.807) (-38319.933) [-38310.820] (-38310.014) -- 1:09:42
529000 -- (-38307.161) (-38323.207) [-38304.236] (-38309.835) * (-38303.273) (-38309.616) [-38315.453] (-38301.266) -- 1:09:34
530000 -- (-38306.124) (-38311.290) (-38310.043) [-38311.554] * (-38299.965) (-38307.379) [-38309.375] (-38308.851) -- 1:09:25
Average standard deviation of split frequencies: 0.000948
531000 -- [-38317.578] (-38300.035) (-38308.516) (-38316.580) * [-38303.466] (-38306.627) (-38313.892) (-38312.911) -- 1:09:16
532000 -- (-38312.870) (-38321.435) (-38307.982) [-38305.398] * (-38310.240) [-38296.989] (-38302.746) (-38312.900) -- 1:09:07
533000 -- (-38302.368) [-38305.594] (-38320.820) (-38306.966) * (-38305.494) (-38308.706) [-38299.733] (-38305.113) -- 1:08:59
534000 -- (-38302.383) (-38314.751) [-38310.591] (-38304.982) * (-38308.063) (-38299.619) (-38308.191) [-38307.934] -- 1:08:49
535000 -- (-38308.161) (-38319.421) (-38302.839) [-38312.332] * (-38309.565) (-38310.717) [-38306.047] (-38324.851) -- 1:08:40
Average standard deviation of split frequencies: 0.000938
536000 -- (-38305.917) (-38306.420) [-38305.188] (-38306.804) * (-38313.357) [-38309.748] (-38303.155) (-38321.553) -- 1:08:31
537000 -- (-38301.773) (-38308.101) (-38306.546) [-38298.527] * (-38297.674) (-38299.808) (-38319.223) [-38304.671] -- 1:08:23
538000 -- (-38299.391) (-38310.313) (-38307.169) [-38309.501] * (-38310.091) (-38316.571) (-38301.658) [-38303.132] -- 1:08:14
539000 -- (-38308.361) (-38313.656) (-38322.320) [-38302.271] * (-38312.000) (-38326.268) (-38305.410) [-38300.560] -- 1:08:05
540000 -- (-38305.487) [-38304.060] (-38313.001) (-38306.370) * (-38314.015) (-38311.256) (-38299.204) [-38300.349] -- 1:07:56
Average standard deviation of split frequencies: 0.000872
541000 -- (-38303.419) [-38302.150] (-38309.549) (-38299.754) * (-38303.353) (-38299.586) [-38301.318] (-38297.429) -- 1:07:48
542000 -- (-38306.399) [-38301.975] (-38313.869) (-38307.647) * (-38309.584) [-38304.614] (-38312.043) (-38302.903) -- 1:07:39
543000 -- (-38302.225) (-38307.461) (-38305.372) [-38306.012] * (-38310.304) (-38303.284) (-38313.988) [-38301.074] -- 1:07:29
544000 -- (-38316.190) (-38308.871) (-38302.919) [-38303.959] * (-38313.031) (-38307.933) [-38306.675] (-38314.963) -- 1:07:21
545000 -- (-38311.484) (-38313.582) [-38299.342] (-38303.704) * (-38304.577) (-38303.461) [-38297.025] (-38301.951) -- 1:07:12
Average standard deviation of split frequencies: 0.000863
546000 -- (-38308.812) (-38307.712) (-38315.362) [-38298.412] * (-38303.833) [-38301.512] (-38303.573) (-38305.221) -- 1:07:03
547000 -- (-38324.341) (-38300.774) (-38322.419) [-38301.120] * (-38315.494) (-38310.099) [-38299.043] (-38301.632) -- 1:06:54
548000 -- (-38313.306) (-38304.981) [-38304.840] (-38309.108) * (-38306.820) (-38310.987) (-38308.588) [-38295.010] -- 1:06:46
549000 -- (-38318.898) (-38318.931) (-38318.645) [-38308.950] * (-38317.731) [-38302.249] (-38308.564) (-38305.336) -- 1:06:37
550000 -- [-38299.986] (-38305.226) (-38320.278) (-38314.102) * (-38310.240) (-38306.692) (-38311.072) [-38301.417] -- 1:06:27
Average standard deviation of split frequencies: 0.000913
551000 -- [-38310.920] (-38295.889) (-38313.521) (-38302.158) * (-38308.848) (-38308.115) (-38314.397) [-38298.131] -- 1:06:19
552000 -- (-38309.798) (-38309.050) [-38306.731] (-38307.877) * (-38305.871) (-38308.501) (-38312.825) [-38298.968] -- 1:06:10
553000 -- (-38317.036) [-38304.834] (-38306.738) (-38299.648) * (-38302.602) (-38309.657) [-38307.705] (-38301.838) -- 1:06:01
554000 -- [-38296.772] (-38311.269) (-38307.124) (-38315.015) * [-38300.056] (-38304.631) (-38309.930) (-38301.619) -- 1:05:52
555000 -- [-38300.156] (-38316.832) (-38307.644) (-38300.114) * (-38316.639) (-38311.328) [-38298.379] (-38303.848) -- 1:05:44
Average standard deviation of split frequencies: 0.000791
556000 -- (-38304.224) (-38309.226) (-38317.045) [-38298.178] * (-38306.066) [-38310.782] (-38305.650) (-38313.428) -- 1:05:35
557000 -- (-38311.584) [-38298.955] (-38320.404) (-38303.673) * (-38304.948) (-38302.335) (-38305.032) [-38310.438] -- 1:05:26
558000 -- (-38308.731) (-38307.081) (-38323.437) [-38301.572] * [-38302.997] (-38303.391) (-38310.864) (-38314.556) -- 1:05:17
559000 -- (-38310.611) [-38306.270] (-38313.326) (-38304.667) * (-38299.818) (-38303.035) [-38307.532] (-38314.802) -- 1:05:08
560000 -- (-38304.446) [-38304.005] (-38308.328) (-38300.845) * (-38301.199) (-38310.883) [-38311.632] (-38318.752) -- 1:04:59
Average standard deviation of split frequencies: 0.000841
561000 -- (-38308.313) (-38309.069) (-38315.659) [-38311.857] * (-38306.340) (-38314.933) (-38302.320) [-38298.266] -- 1:04:50
562000 -- (-38305.675) (-38312.385) (-38306.198) [-38313.027] * [-38305.078] (-38322.418) (-38311.009) (-38303.274) -- 1:04:41
563000 -- (-38303.109) (-38310.701) [-38302.049] (-38315.624) * (-38309.581) (-38316.391) [-38306.774] (-38302.739) -- 1:04:33
564000 -- [-38306.403] (-38309.820) (-38309.371) (-38310.773) * (-38302.501) (-38316.687) [-38306.029] (-38310.236) -- 1:04:23
565000 -- (-38309.404) (-38311.915) (-38305.890) [-38295.505] * (-38313.185) (-38320.690) (-38303.454) [-38310.405] -- 1:04:14
Average standard deviation of split frequencies: 0.000833
566000 -- [-38306.346] (-38315.886) (-38304.523) (-38303.352) * [-38301.333] (-38310.455) (-38298.839) (-38307.575) -- 1:04:06
567000 -- (-38316.337) (-38311.051) (-38300.230) [-38303.609] * (-38304.271) [-38295.599] (-38311.852) (-38306.191) -- 1:03:57
568000 -- (-38313.680) (-38313.385) (-38307.935) [-38315.431] * (-38305.751) (-38306.425) [-38296.326] (-38312.640) -- 1:03:48
569000 -- (-38307.434) (-38310.156) [-38317.090] (-38304.859) * [-38295.271] (-38297.830) (-38304.216) (-38316.560) -- 1:03:39
570000 -- (-38307.941) [-38307.788] (-38307.572) (-38304.836) * (-38298.389) (-38305.285) [-38299.378] (-38315.579) -- 1:03:30
Average standard deviation of split frequencies: 0.000991
571000 -- (-38306.113) [-38302.970] (-38312.603) (-38298.592) * [-38305.775] (-38304.827) (-38307.056) (-38304.290) -- 1:03:21
572000 -- (-38310.155) (-38302.683) (-38311.102) [-38307.183] * (-38309.053) (-38310.917) [-38302.717] (-38303.040) -- 1:03:12
573000 -- (-38305.568) (-38306.999) [-38300.877] (-38304.020) * [-38302.860] (-38309.744) (-38312.974) (-38321.075) -- 1:03:04
574000 -- (-38310.705) (-38300.043) [-38308.253] (-38307.368) * [-38294.921] (-38304.429) (-38298.645) (-38311.206) -- 1:02:55
575000 -- (-38305.071) [-38302.164] (-38309.409) (-38317.055) * (-38302.508) (-38306.864) [-38305.598] (-38306.965) -- 1:02:46
Average standard deviation of split frequencies: 0.001037
576000 -- [-38307.602] (-38303.806) (-38312.449) (-38316.421) * [-38297.466] (-38313.291) (-38310.643) (-38307.114) -- 1:02:37
577000 -- (-38312.725) [-38303.730] (-38307.729) (-38305.971) * [-38303.987] (-38313.251) (-38301.887) (-38307.453) -- 1:02:29
578000 -- (-38303.923) (-38308.972) [-38311.068] (-38323.555) * [-38298.025] (-38312.211) (-38296.996) (-38311.367) -- 1:02:20
579000 -- [-38304.052] (-38300.909) (-38317.449) (-38316.263) * (-38299.187) (-38306.589) [-38300.431] (-38306.786) -- 1:02:10
580000 -- (-38302.669) (-38310.760) (-38304.825) [-38309.130] * [-38298.752] (-38315.082) (-38307.232) (-38298.786) -- 1:02:02
Average standard deviation of split frequencies: 0.001299
581000 -- [-38297.027] (-38317.565) (-38309.198) (-38311.069) * (-38313.554) (-38321.804) (-38319.944) [-38304.215] -- 1:01:53
582000 -- (-38306.346) [-38302.135] (-38305.792) (-38306.825) * [-38306.953] (-38313.415) (-38307.876) (-38313.761) -- 1:01:44
583000 -- [-38304.016] (-38308.667) (-38315.208) (-38302.883) * (-38309.005) (-38305.035) (-38304.624) [-38296.154] -- 1:01:35
584000 -- (-38318.813) (-38303.233) [-38304.698] (-38303.968) * (-38308.794) (-38301.424) (-38307.904) [-38303.823] -- 1:01:27
585000 -- (-38307.785) (-38303.987) (-38305.295) [-38304.462] * (-38310.845) [-38307.803] (-38300.086) (-38320.568) -- 1:01:17
Average standard deviation of split frequencies: 0.001233
586000 -- [-38298.926] (-38314.379) (-38303.572) (-38314.282) * (-38306.795) (-38306.018) [-38303.824] (-38320.903) -- 1:01:08
587000 -- (-38305.320) (-38304.105) (-38303.773) [-38296.491] * (-38305.212) (-38320.292) (-38303.366) [-38312.433] -- 1:01:00
588000 -- [-38300.828] (-38306.295) (-38306.892) (-38299.829) * (-38307.322) (-38311.703) (-38313.665) [-38300.214] -- 1:00:51
589000 -- [-38310.370] (-38296.648) (-38313.973) (-38305.199) * (-38300.543) [-38308.318] (-38308.023) (-38300.367) -- 1:00:42
590000 -- (-38313.459) (-38304.448) (-38309.624) [-38306.425] * (-38304.631) (-38299.644) (-38307.642) [-38301.328] -- 1:00:33
Average standard deviation of split frequencies: 0.001224
591000 -- (-38300.404) (-38303.831) (-38310.049) [-38305.574] * (-38312.181) (-38301.710) (-38303.887) [-38301.088] -- 1:00:24
592000 -- (-38306.393) (-38315.537) [-38302.002] (-38308.156) * (-38312.375) (-38300.841) (-38311.849) [-38299.897] -- 1:00:15
593000 -- (-38311.836) (-38307.318) [-38309.319] (-38302.725) * (-38319.361) (-38303.957) [-38300.404] (-38300.692) -- 1:00:06
594000 -- (-38305.864) (-38306.850) (-38310.754) [-38300.715] * [-38315.883] (-38314.006) (-38313.702) (-38307.167) -- 0:59:57
595000 -- (-38306.718) (-38315.086) [-38307.341] (-38318.282) * (-38306.356) (-38314.167) (-38323.539) [-38309.479] -- 0:59:49
Average standard deviation of split frequencies: 0.001002
596000 -- (-38300.023) (-38316.967) [-38303.080] (-38316.879) * (-38305.222) (-38311.634) [-38305.196] (-38304.163) -- 0:59:40
597000 -- (-38300.339) [-38310.408] (-38314.511) (-38312.395) * [-38295.613] (-38305.014) (-38308.295) (-38302.653) -- 0:59:30
598000 -- [-38300.881] (-38314.281) (-38312.467) (-38313.037) * [-38298.914] (-38302.655) (-38321.465) (-38305.242) -- 0:59:22
599000 -- [-38301.554] (-38311.990) (-38310.575) (-38313.717) * (-38304.229) [-38306.050] (-38306.758) (-38322.452) -- 0:59:13
600000 -- [-38297.978] (-38304.088) (-38311.413) (-38301.773) * [-38301.620] (-38314.707) (-38311.825) (-38309.749) -- 0:59:04
Average standard deviation of split frequencies: 0.001099
601000 -- (-38302.380) (-38304.637) (-38314.542) [-38302.454] * (-38310.720) (-38317.767) (-38308.263) [-38312.236] -- 0:58:55
602000 -- (-38295.975) (-38303.798) [-38310.477] (-38303.218) * (-38314.451) [-38306.553] (-38305.286) (-38310.377) -- 0:58:46
603000 -- (-38308.363) (-38308.056) (-38306.445) [-38301.183] * [-38301.583] (-38308.685) (-38309.933) (-38310.704) -- 0:58:37
604000 -- (-38296.714) (-38313.719) (-38307.380) [-38300.823] * (-38307.016) [-38306.618] (-38300.730) (-38319.990) -- 0:58:28
605000 -- (-38300.339) (-38303.134) (-38307.608) [-38304.536] * (-38310.089) (-38308.045) (-38309.527) [-38304.536] -- 0:58:20
Average standard deviation of split frequencies: 0.001141
606000 -- [-38308.161] (-38303.674) (-38308.340) (-38315.268) * (-38297.977) (-38304.010) [-38307.871] (-38312.821) -- 0:58:11
607000 -- (-38304.107) [-38301.323] (-38301.811) (-38320.899) * (-38307.986) [-38306.935] (-38298.956) (-38307.935) -- 0:58:02
608000 -- [-38305.390] (-38302.650) (-38303.662) (-38304.029) * (-38312.380) (-38300.532) (-38297.095) [-38302.426] -- 0:57:53
609000 -- [-38302.651] (-38312.891) (-38300.497) (-38307.143) * (-38308.866) [-38310.050] (-38299.823) (-38299.267) -- 0:57:45
610000 -- [-38309.366] (-38309.124) (-38302.858) (-38307.129) * [-38307.748] (-38309.605) (-38308.642) (-38309.063) -- 0:57:36
Average standard deviation of split frequencies: 0.001184
611000 -- (-38304.753) (-38307.998) [-38299.970] (-38310.135) * (-38305.105) [-38310.298] (-38310.329) (-38302.211) -- 0:57:27
612000 -- (-38309.223) (-38303.717) [-38321.566] (-38306.791) * [-38296.417] (-38303.935) (-38306.872) (-38312.009) -- 0:57:18
613000 -- [-38303.867] (-38301.333) (-38313.002) (-38303.545) * [-38303.869] (-38302.572) (-38304.558) (-38310.978) -- 0:57:09
614000 -- [-38306.236] (-38306.131) (-38316.751) (-38308.730) * [-38313.160] (-38304.604) (-38306.336) (-38302.089) -- 0:57:00
615000 -- (-38304.907) [-38305.876] (-38319.254) (-38298.567) * (-38301.132) (-38304.973) (-38307.447) [-38305.966] -- 0:56:51
Average standard deviation of split frequencies: 0.001122
616000 -- [-38304.749] (-38308.220) (-38307.239) (-38305.794) * (-38305.805) (-38303.346) [-38301.000] (-38297.688) -- 0:56:43
617000 -- [-38301.659] (-38309.634) (-38314.884) (-38308.897) * (-38308.084) (-38306.461) (-38305.493) [-38293.829] -- 0:56:34
618000 -- [-38301.441] (-38307.809) (-38297.465) (-38315.241) * (-38309.390) (-38307.050) [-38304.935] (-38302.811) -- 0:56:25
619000 -- (-38314.758) (-38300.956) (-38297.792) [-38301.327] * [-38301.977] (-38300.925) (-38312.836) (-38311.419) -- 0:56:16
620000 -- (-38323.029) [-38298.503] (-38300.901) (-38311.127) * (-38317.921) (-38302.170) [-38301.265] (-38305.456) -- 0:56:07
Average standard deviation of split frequencies: 0.000911
621000 -- (-38316.942) (-38299.923) [-38299.983] (-38321.131) * (-38313.749) (-38305.637) (-38300.991) [-38307.360] -- 0:55:58
622000 -- [-38308.322] (-38309.199) (-38307.567) (-38305.562) * (-38307.698) (-38298.917) [-38305.204] (-38311.684) -- 0:55:49
623000 -- (-38310.335) (-38305.185) (-38307.806) [-38301.023] * (-38305.596) [-38307.722] (-38304.581) (-38314.382) -- 0:55:40
624000 -- (-38313.379) (-38310.341) [-38298.327] (-38309.301) * (-38307.920) (-38304.377) [-38302.915] (-38309.396) -- 0:55:32
625000 -- (-38305.164) [-38304.512] (-38311.724) (-38315.561) * [-38303.375] (-38310.954) (-38302.831) (-38314.499) -- 0:55:22
Average standard deviation of split frequencies: 0.000853
626000 -- (-38303.211) [-38303.600] (-38309.825) (-38314.927) * [-38300.576] (-38308.463) (-38302.039) (-38312.794) -- 0:55:14
627000 -- (-38309.035) [-38300.157] (-38313.233) (-38309.328) * [-38306.123] (-38312.520) (-38298.063) (-38311.056) -- 0:55:05
628000 -- (-38307.948) [-38303.091] (-38312.635) (-38315.624) * [-38311.106] (-38314.258) (-38311.516) (-38312.186) -- 0:54:56
629000 -- (-38319.145) (-38309.355) [-38314.240] (-38302.063) * (-38305.876) (-38313.985) [-38303.137] (-38309.827) -- 0:54:47
630000 -- (-38312.516) [-38300.269] (-38314.095) (-38307.792) * [-38303.440] (-38311.014) (-38303.448) (-38310.999) -- 0:54:38
Average standard deviation of split frequencies: 0.000947
631000 -- (-38312.951) [-38308.273] (-38304.288) (-38310.355) * [-38300.303] (-38301.341) (-38318.519) (-38307.520) -- 0:54:29
632000 -- (-38314.515) (-38300.229) (-38304.408) [-38298.736] * (-38317.424) (-38305.465) (-38307.693) [-38303.974] -- 0:54:20
633000 -- (-38305.266) (-38303.913) [-38307.164] (-38308.248) * (-38305.056) (-38299.224) [-38306.904] (-38302.386) -- 0:54:11
634000 -- (-38305.409) (-38311.955) [-38305.254] (-38307.113) * (-38319.750) [-38299.906] (-38304.921) (-38314.113) -- 0:54:03
635000 -- (-38306.336) (-38309.139) [-38303.473] (-38312.596) * (-38311.216) (-38308.679) [-38299.180] (-38307.345) -- 0:53:54
Average standard deviation of split frequencies: 0.001137
636000 -- (-38302.898) (-38329.133) [-38301.831] (-38299.589) * (-38317.503) (-38320.349) (-38305.503) [-38303.825] -- 0:53:45
637000 -- (-38311.679) (-38308.223) (-38308.192) [-38309.597] * [-38311.209] (-38303.800) (-38310.629) (-38304.117) -- 0:53:36
638000 -- (-38307.364) (-38313.878) [-38303.621] (-38311.751) * (-38314.557) [-38306.439] (-38312.681) (-38298.055) -- 0:53:27
639000 -- (-38298.986) (-38306.204) (-38304.910) [-38307.386] * (-38312.152) (-38305.633) (-38305.769) [-38303.998] -- 0:53:18
640000 -- (-38306.778) [-38306.103] (-38310.353) (-38302.189) * [-38316.935] (-38307.431) (-38306.706) (-38304.882) -- 0:53:09
Average standard deviation of split frequencies: 0.000981
641000 -- (-38304.431) [-38302.317] (-38303.780) (-38304.029) * (-38308.583) (-38303.609) (-38311.498) [-38309.947] -- 0:53:01
642000 -- [-38301.566] (-38307.109) (-38316.995) (-38308.460) * (-38297.172) [-38316.958] (-38309.854) (-38321.608) -- 0:52:52
643000 -- [-38301.228] (-38306.470) (-38303.733) (-38316.962) * [-38304.093] (-38312.993) (-38319.731) (-38305.857) -- 0:52:43
644000 -- [-38297.570] (-38307.799) (-38299.784) (-38311.848) * (-38298.774) (-38305.354) (-38303.926) [-38302.603] -- 0:52:34
645000 -- (-38311.881) (-38311.879) [-38305.546] (-38310.489) * [-38301.435] (-38312.112) (-38305.824) (-38301.294) -- 0:52:26
Average standard deviation of split frequencies: 0.000924
646000 -- [-38302.489] (-38310.557) (-38305.058) (-38304.843) * (-38305.053) (-38303.945) (-38309.254) [-38300.669] -- 0:52:17
647000 -- (-38306.233) [-38297.734] (-38298.506) (-38316.611) * (-38307.922) (-38310.183) [-38297.182] (-38307.836) -- 0:52:08
648000 -- (-38304.250) (-38305.350) [-38296.065] (-38318.659) * [-38306.320] (-38299.622) (-38303.236) (-38312.769) -- 0:51:59
649000 -- (-38303.165) (-38308.407) [-38303.631] (-38306.862) * [-38301.792] (-38304.922) (-38302.403) (-38323.218) -- 0:51:50
650000 -- (-38299.776) (-38312.516) (-38313.779) [-38301.441] * (-38302.505) [-38303.272] (-38315.205) (-38308.522) -- 0:51:41
Average standard deviation of split frequencies: 0.000918
651000 -- (-38309.641) (-38315.186) [-38302.140] (-38302.982) * [-38305.357] (-38305.443) (-38309.440) (-38321.385) -- 0:51:32
652000 -- (-38308.855) (-38313.467) (-38308.236) [-38300.455] * (-38304.455) (-38305.577) (-38312.438) [-38300.865] -- 0:51:23
653000 -- (-38309.790) (-38300.020) (-38308.281) [-38305.227] * [-38307.090] (-38319.148) (-38326.577) (-38316.414) -- 0:51:15
654000 -- (-38301.127) (-38300.561) (-38306.799) [-38297.547] * (-38308.294) (-38311.142) (-38317.343) [-38308.083] -- 0:51:06
655000 -- (-38311.840) (-38302.784) [-38305.430] (-38307.426) * [-38303.698] (-38320.499) (-38315.653) (-38310.785) -- 0:50:57
Average standard deviation of split frequencies: 0.000671
656000 -- (-38304.187) (-38301.968) [-38300.838] (-38313.530) * [-38302.287] (-38315.887) (-38308.339) (-38304.636) -- 0:50:48
657000 -- (-38297.660) (-38302.656) (-38301.287) [-38298.635] * [-38300.516] (-38305.588) (-38307.632) (-38307.775) -- 0:50:39
658000 -- (-38301.872) [-38303.884] (-38315.624) (-38311.968) * [-38299.423] (-38308.804) (-38306.988) (-38295.883) -- 0:50:30
659000 -- [-38304.040] (-38307.705) (-38306.558) (-38315.625) * [-38300.605] (-38302.164) (-38301.227) (-38304.720) -- 0:50:21
660000 -- (-38305.118) (-38299.656) [-38308.449] (-38310.796) * (-38307.380) [-38300.373] (-38309.168) (-38306.084) -- 0:50:13
Average standard deviation of split frequencies: 0.000523
661000 -- [-38302.717] (-38315.679) (-38325.800) (-38312.242) * (-38307.032) (-38307.345) (-38303.523) [-38301.028] -- 0:50:04
662000 -- (-38312.970) (-38320.779) [-38308.194] (-38300.685) * (-38317.520) (-38304.677) [-38304.846] (-38301.331) -- 0:49:55
663000 -- [-38310.706] (-38308.083) (-38313.068) (-38306.166) * (-38305.991) (-38321.254) [-38301.593] (-38309.624) -- 0:49:46
664000 -- (-38317.030) [-38301.451] (-38320.352) (-38298.254) * [-38304.404] (-38313.421) (-38312.724) (-38318.931) -- 0:49:37
665000 -- (-38310.952) (-38309.311) (-38315.980) [-38304.021] * (-38307.190) [-38305.259] (-38312.972) (-38311.620) -- 0:49:29
Average standard deviation of split frequencies: 0.000425
666000 -- (-38308.602) (-38311.046) (-38305.157) [-38309.654] * (-38319.150) (-38302.332) [-38307.079] (-38307.589) -- 0:49:20
667000 -- (-38308.672) (-38309.843) (-38311.146) [-38311.567] * [-38310.375] (-38309.436) (-38319.376) (-38314.596) -- 0:49:11
668000 -- (-38319.226) [-38299.407] (-38318.388) (-38308.932) * (-38314.281) [-38299.503] (-38321.532) (-38310.510) -- 0:49:02
669000 -- [-38309.583] (-38301.143) (-38306.263) (-38318.023) * [-38309.827] (-38303.046) (-38310.024) (-38306.532) -- 0:48:53
670000 -- (-38305.256) (-38311.779) [-38303.890] (-38324.292) * (-38312.047) (-38305.548) [-38309.748] (-38299.701) -- 0:48:44
Average standard deviation of split frequencies: 0.000562
671000 -- (-38308.126) (-38309.526) [-38300.654] (-38320.378) * (-38300.157) (-38310.681) [-38302.943] (-38308.649) -- 0:48:35
672000 -- [-38301.588] (-38308.527) (-38300.843) (-38324.006) * (-38303.583) (-38300.374) (-38312.423) [-38309.398] -- 0:48:27
673000 -- [-38306.241] (-38308.388) (-38315.080) (-38319.207) * (-38302.069) [-38299.651] (-38317.694) (-38317.272) -- 0:48:18
674000 -- [-38295.136] (-38299.043) (-38301.326) (-38308.389) * (-38312.290) (-38303.086) (-38307.851) [-38308.570] -- 0:48:09
675000 -- [-38299.725] (-38305.683) (-38307.939) (-38316.611) * (-38325.202) (-38313.418) [-38308.161] (-38305.777) -- 0:48:00
Average standard deviation of split frequencies: 0.000558
676000 -- (-38316.045) [-38302.025] (-38299.189) (-38301.456) * (-38310.910) (-38303.912) [-38304.994] (-38318.033) -- 0:47:51
677000 -- (-38325.047) [-38304.190] (-38303.671) (-38305.297) * (-38309.459) (-38308.865) (-38305.004) [-38300.912] -- 0:47:42
678000 -- (-38310.428) [-38305.402] (-38300.085) (-38304.922) * [-38307.852] (-38304.785) (-38310.845) (-38305.938) -- 0:47:33
679000 -- [-38302.427] (-38308.376) (-38309.699) (-38304.430) * (-38305.402) [-38301.836] (-38302.386) (-38309.273) -- 0:47:25
680000 -- [-38303.874] (-38309.382) (-38328.487) (-38302.338) * (-38306.677) (-38305.353) (-38305.099) [-38313.515] -- 0:47:16
Average standard deviation of split frequencies: 0.000554
681000 -- (-38307.333) [-38309.391] (-38313.412) (-38317.830) * (-38322.191) (-38312.495) [-38303.911] (-38312.907) -- 0:47:07
682000 -- (-38314.802) (-38307.426) (-38312.119) [-38313.919] * [-38303.679] (-38301.706) (-38307.052) (-38314.092) -- 0:46:58
683000 -- (-38311.415) (-38304.588) (-38305.381) [-38304.366] * (-38310.811) (-38307.630) (-38307.694) [-38303.000] -- 0:46:49
684000 -- [-38296.618] (-38306.228) (-38311.351) (-38302.521) * [-38305.116] (-38309.241) (-38311.569) (-38308.697) -- 0:46:40
685000 -- [-38302.682] (-38312.321) (-38309.406) (-38313.917) * [-38300.814] (-38313.352) (-38319.334) (-38312.317) -- 0:46:31
Average standard deviation of split frequencies: 0.000550
686000 -- (-38310.563) (-38312.201) [-38310.071] (-38316.226) * [-38298.022] (-38310.491) (-38307.753) (-38303.228) -- 0:46:22
687000 -- (-38306.779) [-38303.376] (-38306.523) (-38305.583) * [-38297.210] (-38306.452) (-38308.121) (-38313.035) -- 0:46:14
688000 -- (-38304.906) (-38308.149) [-38307.105] (-38314.402) * (-38314.262) (-38310.877) (-38312.588) [-38301.715] -- 0:46:04
689000 -- (-38317.719) [-38302.821] (-38303.673) (-38307.043) * (-38303.036) (-38319.469) (-38305.308) [-38305.392] -- 0:45:56
690000 -- (-38306.176) [-38296.060] (-38308.206) (-38316.416) * (-38304.512) (-38309.996) [-38310.411] (-38325.008) -- 0:45:47
Average standard deviation of split frequencies: 0.000546
691000 -- (-38314.987) [-38313.034] (-38315.694) (-38303.521) * (-38318.885) [-38303.194] (-38301.945) (-38314.299) -- 0:45:38
692000 -- (-38315.393) (-38310.936) [-38304.805] (-38309.087) * [-38300.048] (-38305.321) (-38306.164) (-38302.045) -- 0:45:29
693000 -- [-38310.901] (-38308.842) (-38330.725) (-38306.273) * (-38311.363) [-38302.830] (-38307.961) (-38306.322) -- 0:45:20
694000 -- (-38311.774) [-38304.858] (-38307.615) (-38305.291) * [-38305.949] (-38305.096) (-38310.285) (-38305.835) -- 0:45:11
695000 -- (-38311.684) (-38300.599) [-38308.482] (-38308.364) * (-38312.051) [-38302.594] (-38314.372) (-38313.284) -- 0:45:02
Average standard deviation of split frequencies: 0.000813
696000 -- (-38310.110) [-38301.253] (-38311.823) (-38310.793) * (-38311.967) (-38310.846) [-38306.049] (-38314.400) -- 0:44:53
697000 -- (-38307.641) (-38305.541) [-38311.157] (-38304.260) * (-38306.318) (-38318.022) [-38296.013] (-38305.511) -- 0:44:44
698000 -- (-38314.129) (-38312.586) [-38308.931] (-38296.701) * (-38303.715) [-38304.320] (-38311.560) (-38306.430) -- 0:44:36
699000 -- [-38306.620] (-38315.351) (-38305.982) (-38309.289) * [-38301.764] (-38305.124) (-38303.113) (-38305.518) -- 0:44:27
700000 -- (-38307.727) (-38311.089) (-38312.031) [-38306.661] * (-38306.177) [-38311.522] (-38309.551) (-38305.407) -- 0:44:18
Average standard deviation of split frequencies: 0.000718
701000 -- (-38315.150) (-38308.121) [-38316.339] (-38316.075) * [-38307.964] (-38302.545) (-38306.258) (-38313.600) -- 0:44:09
702000 -- (-38295.096) (-38303.574) (-38302.852) [-38312.157] * (-38311.181) (-38300.177) (-38311.468) [-38308.762] -- 0:44:00
703000 -- (-38298.948) (-38305.181) [-38304.284] (-38299.874) * [-38308.011] (-38307.125) (-38300.582) (-38310.554) -- 0:43:52
704000 -- (-38308.489) (-38312.094) [-38306.395] (-38302.013) * [-38310.334] (-38302.829) (-38320.513) (-38312.857) -- 0:43:42
705000 -- (-38313.187) (-38311.589) [-38302.568] (-38302.496) * (-38303.647) (-38300.224) [-38312.737] (-38307.921) -- 0:43:33
Average standard deviation of split frequencies: 0.000757
706000 -- [-38304.552] (-38309.455) (-38314.229) (-38317.897) * (-38308.157) (-38302.863) [-38302.032] (-38319.024) -- 0:43:25
707000 -- (-38310.134) (-38314.393) [-38303.618] (-38306.460) * [-38305.948] (-38307.263) (-38305.581) (-38306.729) -- 0:43:16
708000 -- (-38314.905) (-38307.612) (-38307.841) [-38307.942] * (-38300.543) [-38318.143] (-38310.287) (-38304.810) -- 0:43:07
709000 -- (-38309.007) (-38311.912) [-38298.414] (-38301.565) * [-38303.057] (-38311.906) (-38313.164) (-38304.560) -- 0:42:58
710000 -- (-38309.657) (-38300.017) (-38305.690) [-38301.384] * (-38309.814) (-38303.718) (-38313.368) [-38301.155] -- 0:42:49
Average standard deviation of split frequencies: 0.000708
711000 -- (-38307.341) [-38307.028] (-38303.269) (-38299.205) * (-38318.646) (-38315.304) (-38305.173) [-38311.964] -- 0:42:41
712000 -- [-38305.303] (-38305.835) (-38308.407) (-38306.113) * (-38303.141) (-38310.590) (-38307.194) [-38310.363] -- 0:42:32
713000 -- (-38311.294) [-38306.671] (-38307.619) (-38311.183) * [-38312.944] (-38309.303) (-38312.372) (-38313.436) -- 0:42:23
714000 -- (-38305.543) (-38299.059) (-38305.736) [-38307.058] * (-38310.933) [-38305.697] (-38302.823) (-38305.274) -- 0:42:14
715000 -- (-38296.078) [-38297.727] (-38308.484) (-38312.554) * (-38305.328) (-38307.557) (-38308.176) [-38306.005] -- 0:42:05
Average standard deviation of split frequencies: 0.000702
716000 -- (-38314.269) (-38300.849) [-38299.402] (-38305.960) * (-38305.999) [-38305.980] (-38319.584) (-38307.739) -- 0:41:57
717000 -- (-38310.623) (-38313.042) (-38306.105) [-38302.455] * (-38301.311) (-38304.858) (-38310.029) [-38307.631] -- 0:41:48
718000 -- (-38305.407) (-38311.889) [-38305.744] (-38313.590) * (-38316.504) [-38305.804] (-38304.831) (-38298.340) -- 0:41:39
719000 -- (-38321.084) (-38314.054) (-38305.473) [-38307.550] * (-38321.053) (-38300.793) [-38304.899] (-38299.251) -- 0:41:30
720000 -- (-38322.797) (-38313.427) [-38301.186] (-38299.389) * [-38311.983] (-38301.436) (-38299.953) (-38308.723) -- 0:41:21
Average standard deviation of split frequencies: 0.000698
721000 -- [-38305.224] (-38304.843) (-38321.539) (-38296.186) * (-38313.742) [-38301.230] (-38307.759) (-38300.789) -- 0:41:12
722000 -- (-38308.783) (-38308.602) (-38300.450) [-38303.308] * (-38330.620) [-38303.190] (-38302.710) (-38314.461) -- 0:41:03
723000 -- (-38308.310) (-38304.309) (-38308.448) [-38299.673] * (-38312.960) (-38311.273) [-38307.320] (-38305.967) -- 0:40:55
724000 -- (-38309.927) (-38313.680) [-38309.416] (-38303.634) * (-38311.223) (-38321.443) [-38306.349] (-38312.641) -- 0:40:46
725000 -- (-38305.738) [-38305.148] (-38314.410) (-38314.616) * (-38317.242) [-38301.450] (-38303.333) (-38303.997) -- 0:40:37
Average standard deviation of split frequencies: 0.000649
726000 -- [-38299.855] (-38299.419) (-38302.329) (-38315.137) * (-38297.764) (-38308.504) [-38304.654] (-38303.723) -- 0:40:28
727000 -- (-38298.305) [-38298.925] (-38311.691) (-38315.455) * (-38302.553) (-38314.499) [-38300.111] (-38317.206) -- 0:40:19
728000 -- (-38309.840) [-38298.104] (-38309.060) (-38305.058) * (-38315.589) (-38315.290) [-38298.708] (-38309.487) -- 0:40:10
729000 -- (-38309.644) (-38301.247) (-38312.960) [-38304.058] * (-38302.532) (-38317.999) [-38299.152] (-38301.961) -- 0:40:01
730000 -- (-38300.983) [-38297.223] (-38302.382) (-38315.266) * (-38311.537) (-38305.816) [-38312.393] (-38305.142) -- 0:39:53
Average standard deviation of split frequencies: 0.000344
731000 -- (-38302.802) (-38307.978) (-38322.444) [-38312.329] * (-38304.833) [-38301.401] (-38306.278) (-38308.739) -- 0:39:44
732000 -- (-38301.404) (-38312.136) [-38311.276] (-38319.379) * (-38319.211) [-38306.620] (-38303.773) (-38313.198) -- 0:39:35
733000 -- [-38305.123] (-38302.467) (-38304.160) (-38314.470) * (-38302.998) (-38306.970) (-38299.067) [-38311.362] -- 0:39:26
734000 -- (-38320.490) [-38307.430] (-38319.877) (-38300.857) * [-38301.896] (-38326.435) (-38298.880) (-38310.562) -- 0:39:17
735000 -- (-38309.401) (-38300.229) [-38309.286] (-38311.196) * [-38307.413] (-38309.246) (-38306.447) (-38298.297) -- 0:39:08
Average standard deviation of split frequencies: 0.000256
736000 -- [-38304.985] (-38303.075) (-38303.194) (-38294.612) * [-38301.685] (-38315.105) (-38298.958) (-38301.549) -- 0:38:59
737000 -- (-38308.055) [-38306.729] (-38305.004) (-38304.826) * (-38307.033) (-38311.461) (-38306.526) [-38296.250] -- 0:38:50
738000 -- [-38299.054] (-38303.587) (-38313.399) (-38307.906) * [-38307.526] (-38297.917) (-38309.977) (-38305.803) -- 0:38:42
739000 -- (-38303.255) [-38297.449] (-38310.177) (-38310.186) * (-38302.637) (-38301.461) (-38308.165) [-38293.687] -- 0:38:33
740000 -- [-38305.571] (-38317.985) (-38322.800) (-38302.787) * (-38308.711) [-38309.490] (-38317.050) (-38301.915) -- 0:38:24
Average standard deviation of split frequencies: 0.000382
741000 -- [-38305.297] (-38300.773) (-38314.381) (-38312.873) * (-38305.910) [-38307.904] (-38305.208) (-38315.532) -- 0:38:15
742000 -- (-38317.525) (-38314.242) [-38306.269] (-38311.767) * (-38305.595) [-38304.887] (-38316.788) (-38308.428) -- 0:38:06
743000 -- (-38313.368) (-38300.919) (-38308.267) [-38302.022] * (-38309.180) [-38306.183] (-38307.829) (-38298.144) -- 0:37:57
744000 -- (-38331.524) (-38309.675) (-38302.941) [-38299.447] * (-38297.088) (-38318.622) [-38298.403] (-38301.984) -- 0:37:48
745000 -- (-38316.290) (-38306.909) (-38312.025) [-38303.165] * (-38299.736) (-38314.691) (-38311.049) [-38297.785] -- 0:37:40
Average standard deviation of split frequencies: 0.000632
746000 -- [-38305.258] (-38306.776) (-38322.608) (-38307.146) * [-38312.688] (-38309.559) (-38300.530) (-38311.762) -- 0:37:31
747000 -- (-38305.400) (-38309.200) (-38301.867) [-38307.032] * (-38296.105) (-38307.241) (-38305.831) [-38296.891] -- 0:37:22
748000 -- (-38302.841) (-38328.689) [-38307.986] (-38314.539) * [-38308.450] (-38305.683) (-38299.320) (-38307.044) -- 0:37:13
749000 -- (-38310.493) (-38320.643) (-38312.273) [-38316.321] * (-38311.072) (-38303.901) [-38296.412] (-38303.189) -- 0:37:04
750000 -- [-38304.146] (-38317.624) (-38317.385) (-38302.798) * [-38312.332] (-38322.991) (-38307.037) (-38295.686) -- 0:36:55
Average standard deviation of split frequencies: 0.000712
751000 -- (-38308.804) [-38313.267] (-38310.438) (-38303.402) * (-38317.474) (-38309.818) (-38307.803) [-38301.518] -- 0:36:46
752000 -- (-38314.375) (-38312.100) (-38301.892) [-38302.059] * (-38305.361) (-38317.658) (-38300.201) [-38305.832] -- 0:36:38
753000 -- (-38309.541) (-38315.295) (-38303.877) [-38303.755] * [-38308.250] (-38309.658) (-38307.520) (-38305.159) -- 0:36:29
754000 -- (-38312.898) (-38306.771) (-38320.837) [-38306.708] * (-38306.029) (-38317.916) (-38314.786) [-38308.095] -- 0:36:20
755000 -- (-38295.506) (-38310.405) [-38303.279] (-38308.730) * (-38310.779) (-38313.449) [-38304.083] (-38320.087) -- 0:36:11
Average standard deviation of split frequencies: 0.000748
756000 -- (-38311.463) (-38311.221) (-38308.175) [-38303.042] * (-38319.088) (-38317.633) [-38304.486] (-38303.071) -- 0:36:02
757000 -- (-38314.502) (-38297.994) (-38312.697) [-38300.726] * [-38294.280] (-38308.762) (-38305.388) (-38300.887) -- 0:35:53
758000 -- [-38299.400] (-38320.245) (-38310.447) (-38312.604) * [-38304.117] (-38310.174) (-38313.259) (-38296.132) -- 0:35:44
759000 -- (-38311.684) (-38307.629) (-38309.556) [-38308.821] * [-38299.318] (-38312.484) (-38319.194) (-38302.906) -- 0:35:35
760000 -- (-38307.032) [-38304.446] (-38306.998) (-38304.740) * (-38300.960) [-38306.969] (-38311.013) (-38304.448) -- 0:35:27
Average standard deviation of split frequencies: 0.000785
761000 -- (-38301.178) (-38302.199) [-38301.468] (-38304.610) * (-38317.725) (-38311.086) (-38312.628) [-38308.824] -- 0:35:18
762000 -- (-38298.242) [-38303.647] (-38325.392) (-38315.161) * (-38310.488) (-38308.548) [-38313.629] (-38308.240) -- 0:35:09
763000 -- [-38300.116] (-38311.018) (-38325.098) (-38312.458) * (-38322.336) [-38296.841] (-38307.522) (-38310.560) -- 0:35:00
764000 -- (-38301.511) [-38299.449] (-38308.691) (-38312.539) * (-38315.232) (-38298.893) [-38308.746] (-38312.670) -- 0:34:51
765000 -- (-38307.012) (-38315.100) [-38303.752] (-38306.097) * (-38305.965) (-38304.550) [-38299.109] (-38314.338) -- 0:34:43
Average standard deviation of split frequencies: 0.000738
766000 -- (-38302.654) (-38319.718) [-38299.855] (-38313.481) * (-38296.113) (-38305.210) (-38313.922) [-38302.711] -- 0:34:34
767000 -- (-38303.331) (-38316.573) [-38298.057] (-38313.265) * [-38300.742] (-38309.102) (-38314.488) (-38302.282) -- 0:34:25
768000 -- (-38309.852) (-38312.301) [-38305.293] (-38322.805) * (-38306.693) [-38310.866] (-38316.242) (-38306.727) -- 0:34:16
769000 -- [-38307.542] (-38309.184) (-38304.035) (-38305.905) * (-38307.831) [-38300.592] (-38303.848) (-38308.545) -- 0:34:07
770000 -- (-38309.469) [-38304.213] (-38306.276) (-38319.934) * [-38302.095] (-38308.475) (-38297.129) (-38306.232) -- 0:33:58
Average standard deviation of split frequencies: 0.000693
771000 -- (-38310.310) [-38311.799] (-38304.062) (-38318.878) * (-38309.160) (-38303.883) (-38303.460) [-38304.104] -- 0:33:50
772000 -- (-38319.224) [-38307.151] (-38310.501) (-38319.038) * (-38305.291) (-38305.130) [-38308.610] (-38311.998) -- 0:33:41
773000 -- (-38298.203) (-38306.808) [-38304.768] (-38319.786) * (-38308.138) (-38308.158) [-38305.618] (-38307.960) -- 0:33:32
774000 -- (-38299.853) (-38305.297) (-38304.396) [-38308.535] * [-38305.779] (-38301.592) (-38306.728) (-38296.708) -- 0:33:23
775000 -- [-38300.378] (-38313.760) (-38305.589) (-38310.189) * (-38309.235) [-38302.220] (-38312.040) (-38303.326) -- 0:33:14
Average standard deviation of split frequencies: 0.000688
776000 -- (-38304.636) (-38312.355) (-38298.331) [-38298.240] * (-38315.605) (-38302.552) (-38312.286) [-38306.916] -- 0:33:05
777000 -- (-38307.938) [-38310.179] (-38301.633) (-38309.378) * (-38311.243) (-38308.343) (-38314.960) [-38309.094] -- 0:32:56
778000 -- (-38307.003) (-38314.663) [-38301.815] (-38308.553) * (-38308.198) [-38304.375] (-38310.740) (-38303.273) -- 0:32:48
779000 -- (-38302.417) (-38303.921) (-38311.301) [-38304.704] * (-38319.972) [-38304.141] (-38296.438) (-38305.962) -- 0:32:39
780000 -- [-38298.716] (-38312.266) (-38310.592) (-38308.711) * (-38304.986) (-38305.122) (-38305.041) [-38302.598] -- 0:32:30
Average standard deviation of split frequencies: 0.000765
781000 -- (-38306.096) (-38309.487) (-38308.362) [-38300.018] * (-38303.360) (-38301.414) (-38320.856) [-38298.911] -- 0:32:21
782000 -- (-38304.752) (-38303.062) (-38311.754) [-38303.868] * (-38325.285) (-38307.561) [-38309.783] (-38303.551) -- 0:32:12
783000 -- (-38306.127) (-38303.832) (-38319.238) [-38305.197] * (-38304.028) [-38298.475] (-38304.003) (-38308.173) -- 0:32:03
784000 -- (-38311.202) [-38308.938] (-38303.281) (-38307.565) * [-38305.396] (-38301.084) (-38298.249) (-38302.600) -- 0:31:55
785000 -- (-38306.331) [-38316.163] (-38307.415) (-38311.745) * (-38319.246) (-38302.069) (-38306.371) [-38307.278] -- 0:31:46
Average standard deviation of split frequencies: 0.000960
786000 -- (-38308.652) (-38301.915) [-38306.662] (-38319.014) * (-38302.171) (-38317.682) [-38303.538] (-38304.786) -- 0:31:37
787000 -- (-38308.262) [-38304.657] (-38292.532) (-38306.909) * (-38310.086) (-38315.056) (-38305.669) [-38313.185] -- 0:31:28
788000 -- (-38310.692) (-38305.001) (-38301.478) [-38300.315] * (-38311.957) (-38317.154) [-38314.050] (-38308.609) -- 0:31:19
789000 -- (-38314.393) (-38300.879) [-38298.753] (-38304.818) * (-38308.804) (-38306.269) [-38305.248] (-38304.275) -- 0:31:10
790000 -- (-38312.827) (-38301.942) [-38300.363] (-38310.153) * (-38303.893) [-38300.561] (-38301.224) (-38307.722) -- 0:31:01
Average standard deviation of split frequencies: 0.000874
791000 -- [-38317.775] (-38305.129) (-38302.155) (-38303.111) * [-38296.427] (-38315.555) (-38304.374) (-38296.539) -- 0:30:52
792000 -- (-38310.965) [-38305.614] (-38303.028) (-38316.760) * (-38310.772) (-38304.158) (-38311.199) [-38301.336] -- 0:30:43
793000 -- [-38307.989] (-38305.453) (-38309.326) (-38309.462) * (-38310.747) (-38310.677) (-38308.071) [-38306.037] -- 0:30:35
794000 -- (-38313.329) [-38309.595] (-38308.762) (-38310.806) * (-38315.646) (-38315.595) [-38302.837] (-38314.283) -- 0:30:26
795000 -- (-38305.743) [-38304.485] (-38306.008) (-38307.223) * (-38310.979) (-38305.419) [-38312.035] (-38305.187) -- 0:30:17
Average standard deviation of split frequencies: 0.000869
796000 -- [-38307.680] (-38307.101) (-38317.807) (-38304.430) * (-38315.600) [-38298.270] (-38312.399) (-38301.898) -- 0:30:08
797000 -- (-38303.784) [-38302.395] (-38307.305) (-38306.816) * (-38319.845) [-38303.378] (-38308.647) (-38298.695) -- 0:29:59
798000 -- (-38312.681) (-38308.776) [-38307.920] (-38309.415) * (-38314.729) [-38303.081] (-38307.480) (-38296.014) -- 0:29:50
799000 -- (-38318.118) (-38301.368) [-38309.008] (-38325.840) * (-38302.424) (-38304.731) (-38313.897) [-38299.997] -- 0:29:41
800000 -- [-38303.080] (-38301.096) (-38314.507) (-38312.653) * [-38305.022] (-38316.053) (-38307.365) (-38307.924) -- 0:29:33
Average standard deviation of split frequencies: 0.000667
801000 -- (-38309.248) [-38309.247] (-38318.091) (-38316.033) * (-38302.284) (-38310.276) (-38322.334) [-38295.820] -- 0:29:24
802000 -- [-38304.601] (-38308.105) (-38301.833) (-38304.573) * [-38298.196] (-38316.914) (-38305.245) (-38303.485) -- 0:29:15
803000 -- (-38308.806) (-38312.438) (-38301.095) [-38299.895] * (-38304.840) (-38308.440) (-38306.560) [-38304.039] -- 0:29:06
804000 -- [-38307.328] (-38309.564) (-38301.678) (-38307.094) * [-38308.735] (-38322.859) (-38307.554) (-38305.048) -- 0:28:57
805000 -- [-38297.455] (-38304.564) (-38306.449) (-38309.180) * [-38300.237] (-38312.284) (-38325.551) (-38316.706) -- 0:28:48
Average standard deviation of split frequencies: 0.000546
806000 -- [-38306.930] (-38311.147) (-38320.330) (-38307.471) * (-38304.482) (-38312.819) [-38302.018] (-38312.614) -- 0:28:40
807000 -- (-38312.797) [-38311.602] (-38314.329) (-38296.083) * (-38310.957) (-38314.433) (-38305.418) [-38305.895] -- 0:28:31
808000 -- (-38320.023) [-38307.435] (-38319.147) (-38304.193) * (-38309.037) [-38301.286] (-38298.181) (-38304.377) -- 0:28:22
809000 -- [-38310.732] (-38308.148) (-38310.707) (-38306.562) * (-38323.869) [-38299.408] (-38311.593) (-38300.659) -- 0:28:13
810000 -- (-38305.716) [-38312.193] (-38297.364) (-38313.539) * (-38303.428) (-38305.021) (-38301.770) [-38298.684] -- 0:28:04
Average standard deviation of split frequencies: 0.000426
811000 -- (-38302.493) (-38317.962) [-38306.828] (-38309.364) * (-38308.955) (-38307.010) (-38307.283) [-38304.985] -- 0:27:55
812000 -- (-38315.721) [-38303.076] (-38300.730) (-38303.445) * (-38304.284) (-38305.427) [-38309.019] (-38302.617) -- 0:27:46
813000 -- (-38316.743) (-38301.355) [-38305.174] (-38299.177) * (-38305.327) (-38305.837) [-38304.163] (-38305.752) -- 0:27:37
814000 -- (-38322.595) [-38307.806] (-38306.607) (-38305.841) * [-38305.009] (-38308.456) (-38310.831) (-38297.774) -- 0:27:28
815000 -- (-38311.432) [-38301.637] (-38314.788) (-38317.116) * (-38311.266) (-38316.953) (-38308.061) [-38297.091] -- 0:27:20
Average standard deviation of split frequencies: 0.000732
816000 -- (-38304.862) (-38309.562) [-38312.276] (-38322.181) * (-38305.515) (-38323.725) (-38308.362) [-38303.214] -- 0:27:11
817000 -- (-38318.175) [-38304.803] (-38308.746) (-38318.089) * [-38302.675] (-38309.602) (-38308.169) (-38304.306) -- 0:27:02
818000 -- (-38307.893) (-38303.691) [-38302.140] (-38307.864) * [-38302.674] (-38313.372) (-38299.943) (-38310.623) -- 0:26:53
819000 -- [-38298.557] (-38300.204) (-38317.058) (-38309.108) * [-38309.086] (-38315.497) (-38309.440) (-38309.276) -- 0:26:44
820000 -- [-38303.725] (-38311.844) (-38310.517) (-38308.843) * (-38303.547) [-38304.345] (-38317.041) (-38317.652) -- 0:26:35
Average standard deviation of split frequencies: 0.000919
821000 -- (-38308.410) (-38315.307) [-38312.353] (-38306.534) * (-38304.962) (-38307.584) [-38300.994] (-38314.399) -- 0:26:26
822000 -- (-38312.114) (-38310.846) [-38304.065] (-38303.427) * (-38313.147) (-38319.540) [-38312.251] (-38305.601) -- 0:26:17
823000 -- (-38314.697) (-38307.010) (-38313.620) [-38305.318] * (-38325.443) (-38317.784) [-38305.788] (-38309.204) -- 0:26:08
824000 -- (-38316.464) (-38312.972) (-38306.396) [-38299.541] * (-38305.695) [-38308.084] (-38311.121) (-38304.402) -- 0:26:00
825000 -- (-38313.443) (-38314.649) (-38304.827) [-38298.991] * (-38304.809) [-38304.961] (-38306.760) (-38306.567) -- 0:25:51
Average standard deviation of split frequencies: 0.000837
826000 -- [-38306.716] (-38309.973) (-38301.014) (-38313.005) * (-38302.094) (-38302.083) [-38297.355] (-38311.757) -- 0:25:42
827000 -- (-38315.365) [-38299.994] (-38321.151) (-38305.324) * (-38311.224) (-38313.290) (-38301.412) [-38306.464] -- 0:25:33
828000 -- [-38305.001] (-38307.288) (-38305.132) (-38310.472) * (-38322.857) (-38310.587) (-38304.760) [-38300.910] -- 0:25:24
829000 -- (-38302.385) (-38310.178) [-38303.727] (-38314.090) * (-38310.309) (-38308.236) (-38310.322) [-38305.806] -- 0:25:15
830000 -- (-38303.603) (-38308.901) (-38306.496) [-38302.695] * (-38319.841) [-38299.780] (-38310.534) (-38309.670) -- 0:25:06
Average standard deviation of split frequencies: 0.001022
831000 -- (-38306.947) (-38308.868) (-38324.659) [-38302.906] * (-38319.343) [-38299.635] (-38317.181) (-38300.899) -- 0:24:58
832000 -- (-38297.130) (-38310.766) (-38316.254) [-38305.738] * (-38310.732) (-38310.471) [-38317.934] (-38305.277) -- 0:24:49
833000 -- [-38294.800] (-38308.174) (-38307.311) (-38296.472) * (-38305.095) [-38311.896] (-38310.393) (-38308.807) -- 0:24:40
834000 -- (-38301.117) (-38312.071) [-38300.475] (-38299.718) * (-38310.984) [-38306.230] (-38307.966) (-38317.365) -- 0:24:31
835000 -- (-38300.769) (-38309.376) (-38306.641) [-38307.843] * (-38299.721) [-38299.770] (-38304.276) (-38305.580) -- 0:24:22
Average standard deviation of split frequencies: 0.001165
836000 -- [-38303.350] (-38308.684) (-38301.771) (-38324.164) * (-38307.160) (-38322.815) [-38306.978] (-38310.339) -- 0:24:13
837000 -- [-38303.907] (-38311.916) (-38307.210) (-38320.851) * [-38301.909] (-38306.474) (-38300.434) (-38300.829) -- 0:24:04
838000 -- (-38302.468) (-38298.719) (-38304.673) [-38303.811] * (-38299.580) (-38307.740) (-38310.247) [-38301.559] -- 0:23:56
839000 -- (-38305.034) (-38305.122) [-38306.366] (-38317.559) * [-38307.872] (-38304.117) (-38310.497) (-38314.494) -- 0:23:47
840000 -- [-38305.358] (-38302.817) (-38319.883) (-38316.766) * [-38311.767] (-38306.886) (-38312.563) (-38309.439) -- 0:23:38
Average standard deviation of split frequencies: 0.001196
841000 -- [-38306.877] (-38301.331) (-38307.887) (-38305.637) * (-38307.260) [-38310.780] (-38311.076) (-38310.537) -- 0:23:29
842000 -- (-38301.773) [-38317.939] (-38321.200) (-38307.171) * (-38302.019) (-38306.182) (-38308.101) [-38304.432] -- 0:23:20
843000 -- (-38312.408) [-38305.294] (-38310.688) (-38305.763) * (-38303.281) [-38302.752] (-38300.117) (-38308.572) -- 0:23:11
844000 -- [-38311.224] (-38313.454) (-38307.182) (-38307.036) * (-38311.490) (-38302.643) (-38308.328) [-38297.989] -- 0:23:02
845000 -- [-38306.120] (-38323.508) (-38305.205) (-38310.810) * (-38321.031) (-38309.763) [-38309.331] (-38303.222) -- 0:22:54
Average standard deviation of split frequencies: 0.001077
846000 -- (-38299.874) [-38298.801] (-38313.102) (-38305.313) * (-38310.509) (-38303.430) (-38308.397) [-38306.776] -- 0:22:45
847000 -- (-38315.278) (-38294.791) [-38299.711] (-38310.886) * [-38307.486] (-38312.483) (-38302.141) (-38317.725) -- 0:22:36
848000 -- (-38311.326) (-38303.557) [-38315.789] (-38305.984) * (-38309.650) (-38302.158) [-38304.540] (-38301.332) -- 0:22:27
849000 -- (-38304.904) [-38315.894] (-38319.491) (-38306.890) * (-38305.345) (-38307.804) (-38306.071) [-38315.516] -- 0:22:18
850000 -- (-38306.504) (-38313.950) [-38307.018] (-38307.922) * (-38316.758) (-38312.525) (-38303.143) [-38306.617] -- 0:22:09
Average standard deviation of split frequencies: 0.001145
851000 -- (-38303.963) [-38303.936] (-38314.363) (-38307.102) * (-38303.026) (-38313.963) [-38301.662] (-38309.246) -- 0:22:00
852000 -- [-38302.642] (-38296.889) (-38313.120) (-38311.981) * (-38314.563) (-38310.635) [-38299.465] (-38305.137) -- 0:21:52
853000 -- (-38321.347) (-38303.331) [-38301.580] (-38316.079) * (-38311.856) [-38312.310] (-38303.766) (-38311.158) -- 0:21:43
854000 -- (-38321.662) [-38305.830] (-38305.413) (-38311.981) * (-38316.243) (-38317.280) (-38315.106) [-38301.777] -- 0:21:34
855000 -- (-38318.433) [-38305.972] (-38303.278) (-38317.530) * (-38309.104) (-38312.747) [-38307.369] (-38317.697) -- 0:21:25
Average standard deviation of split frequencies: 0.001138
856000 -- (-38308.598) (-38313.385) (-38302.452) [-38309.900] * [-38309.780] (-38310.639) (-38298.252) (-38306.937) -- 0:21:16
857000 -- [-38305.734] (-38312.388) (-38301.745) (-38311.537) * (-38307.062) [-38301.817] (-38301.527) (-38304.738) -- 0:21:07
858000 -- [-38307.880] (-38303.835) (-38301.945) (-38314.492) * [-38310.845] (-38309.927) (-38300.505) (-38311.268) -- 0:20:58
859000 -- (-38310.751) (-38305.859) [-38302.271] (-38309.545) * [-38297.747] (-38302.362) (-38299.608) (-38311.383) -- 0:20:49
860000 -- (-38318.285) [-38312.165] (-38306.639) (-38304.537) * (-38301.891) (-38304.371) (-38313.939) [-38307.694] -- 0:20:41
Average standard deviation of split frequencies: 0.001022
861000 -- (-38307.590) (-38306.600) [-38301.918] (-38305.639) * (-38307.749) (-38319.334) [-38304.449] (-38307.636) -- 0:20:32
862000 -- (-38306.276) [-38301.669] (-38316.515) (-38322.515) * (-38304.383) [-38311.555] (-38303.995) (-38304.279) -- 0:20:23
863000 -- (-38308.945) (-38303.356) (-38312.388) [-38303.376] * (-38315.118) [-38298.690] (-38311.489) (-38302.227) -- 0:20:14
864000 -- (-38317.220) (-38308.673) [-38300.222] (-38304.029) * (-38314.685) (-38306.968) (-38317.941) [-38301.988] -- 0:20:05
865000 -- (-38306.770) (-38311.493) [-38298.031] (-38313.807) * (-38315.425) (-38301.372) [-38312.338] (-38298.841) -- 0:19:56
Average standard deviation of split frequencies: 0.000944
866000 -- (-38309.964) (-38305.908) [-38307.268] (-38305.365) * (-38302.674) [-38307.080] (-38311.937) (-38308.815) -- 0:19:47
867000 -- (-38300.218) (-38306.490) [-38303.298] (-38307.655) * (-38294.408) [-38306.002] (-38303.026) (-38307.193) -- 0:19:39
868000 -- [-38303.105] (-38309.967) (-38310.420) (-38306.454) * (-38302.954) (-38306.566) [-38302.739] (-38313.812) -- 0:19:30
869000 -- (-38302.974) [-38306.367] (-38306.376) (-38307.567) * (-38309.333) [-38299.003] (-38305.841) (-38323.401) -- 0:19:21
870000 -- (-38308.233) [-38305.167] (-38301.483) (-38308.053) * [-38311.365] (-38305.222) (-38303.212) (-38309.839) -- 0:19:12
Average standard deviation of split frequencies: 0.000902
871000 -- (-38305.953) [-38299.762] (-38318.677) (-38312.312) * (-38311.599) [-38297.589] (-38298.650) (-38304.217) -- 0:19:03
872000 -- (-38310.327) [-38305.080] (-38304.989) (-38307.509) * (-38308.877) (-38302.372) [-38300.402] (-38307.179) -- 0:18:54
873000 -- (-38306.310) (-38309.369) [-38300.489] (-38308.911) * (-38306.182) [-38296.778] (-38298.419) (-38307.635) -- 0:18:45
874000 -- (-38312.760) (-38305.480) (-38301.400) [-38304.700] * (-38306.464) (-38311.628) (-38303.456) [-38311.549] -- 0:18:37
875000 -- (-38312.520) [-38309.587] (-38304.859) (-38311.401) * [-38308.298] (-38313.445) (-38309.079) (-38304.253) -- 0:18:28
Average standard deviation of split frequencies: 0.000897
876000 -- (-38306.498) [-38298.583] (-38318.336) (-38303.400) * (-38312.152) (-38317.716) [-38310.005] (-38303.503) -- 0:18:19
877000 -- (-38314.010) [-38301.305] (-38311.924) (-38312.236) * (-38319.899) [-38301.138] (-38300.511) (-38303.207) -- 0:18:10
878000 -- (-38306.141) [-38304.420] (-38308.339) (-38316.648) * (-38313.368) (-38311.907) [-38306.809] (-38307.745) -- 0:18:01
879000 -- [-38314.111] (-38306.129) (-38324.914) (-38301.524) * (-38308.213) (-38318.995) (-38310.414) [-38303.734] -- 0:17:52
880000 -- (-38318.927) (-38313.072) (-38311.714) [-38302.652] * (-38311.419) [-38296.216] (-38313.751) (-38310.771) -- 0:17:43
Average standard deviation of split frequencies: 0.001142
881000 -- (-38316.002) (-38316.253) (-38308.629) [-38300.463] * (-38306.815) (-38298.121) [-38300.560] (-38317.198) -- 0:17:34
882000 -- (-38312.462) (-38321.568) [-38307.572] (-38302.042) * (-38305.796) (-38307.978) (-38309.414) [-38307.277] -- 0:17:26
883000 -- (-38305.874) [-38306.125] (-38306.711) (-38301.690) * (-38302.263) [-38304.255] (-38304.760) (-38313.622) -- 0:17:17
884000 -- (-38306.434) (-38311.750) (-38307.276) [-38315.655] * (-38309.077) [-38299.469] (-38314.599) (-38312.687) -- 0:17:08
885000 -- (-38301.073) (-38314.409) [-38294.440] (-38307.516) * [-38304.249] (-38319.018) (-38303.196) (-38305.108) -- 0:16:59
Average standard deviation of split frequencies: 0.001029
886000 -- [-38317.263] (-38305.502) (-38310.383) (-38313.379) * (-38308.069) (-38313.343) (-38308.762) [-38301.055] -- 0:16:50
887000 -- (-38316.532) [-38301.763] (-38316.242) (-38309.768) * (-38304.982) (-38304.673) [-38307.132] (-38309.432) -- 0:16:41
888000 -- (-38305.979) [-38304.127] (-38309.916) (-38319.672) * [-38301.919] (-38307.135) (-38305.922) (-38306.360) -- 0:16:32
889000 -- (-38331.795) [-38298.959] (-38301.790) (-38321.138) * (-38305.559) (-38304.043) (-38314.422) [-38307.874] -- 0:16:24
890000 -- [-38303.215] (-38310.357) (-38309.542) (-38296.405) * (-38315.411) [-38304.578] (-38313.884) (-38314.919) -- 0:16:15
Average standard deviation of split frequencies: 0.001129
891000 -- [-38300.416] (-38306.669) (-38321.277) (-38298.931) * (-38308.850) (-38300.956) (-38311.962) [-38297.040] -- 0:16:06
892000 -- (-38304.234) [-38299.845] (-38316.698) (-38306.325) * (-38303.371) (-38309.673) (-38306.550) [-38300.566] -- 0:15:57
893000 -- (-38299.567) [-38301.121] (-38311.225) (-38304.094) * (-38308.620) (-38305.179) [-38308.146] (-38309.805) -- 0:15:48
894000 -- (-38298.509) (-38304.163) (-38302.356) [-38297.162] * [-38310.380] (-38306.662) (-38309.812) (-38304.992) -- 0:15:39
895000 -- (-38302.445) (-38303.156) (-38312.018) [-38303.983] * [-38303.900] (-38313.515) (-38302.985) (-38305.206) -- 0:15:30
Average standard deviation of split frequencies: 0.001193
896000 -- (-38306.306) (-38302.211) [-38309.382] (-38315.129) * [-38307.187] (-38300.966) (-38309.960) (-38314.194) -- 0:15:21
897000 -- (-38311.414) [-38312.564] (-38308.833) (-38326.921) * (-38304.225) (-38299.335) (-38317.349) [-38302.537] -- 0:15:13
898000 -- [-38311.401] (-38307.438) (-38306.383) (-38310.790) * (-38310.180) [-38300.728] (-38308.820) (-38304.712) -- 0:15:04
899000 -- (-38320.884) (-38307.560) (-38306.535) [-38307.927] * (-38318.835) [-38303.875] (-38305.977) (-38314.230) -- 0:14:55
900000 -- (-38317.180) (-38309.649) (-38303.174) [-38313.535] * [-38322.642] (-38300.499) (-38319.037) (-38303.379) -- 0:14:46
Average standard deviation of split frequencies: 0.001151
901000 -- [-38298.741] (-38321.096) (-38316.641) (-38301.993) * (-38314.432) (-38307.264) [-38312.848] (-38301.348) -- 0:14:37
902000 -- (-38313.498) (-38321.342) [-38314.046] (-38306.994) * (-38322.172) (-38317.646) [-38305.703] (-38308.562) -- 0:14:28
903000 -- (-38308.670) (-38302.989) (-38308.105) [-38306.648] * (-38298.717) (-38326.427) [-38297.858] (-38304.953) -- 0:14:20
904000 -- (-38310.435) (-38308.478) (-38309.221) [-38307.836] * (-38302.266) (-38311.105) [-38298.461] (-38299.002) -- 0:14:11
905000 -- (-38303.508) [-38300.953] (-38303.983) (-38319.106) * (-38299.013) (-38314.502) [-38299.317] (-38307.819) -- 0:14:02
Average standard deviation of split frequencies: 0.001145
906000 -- [-38313.383] (-38323.598) (-38300.227) (-38305.454) * (-38299.784) (-38318.623) [-38305.927] (-38310.175) -- 0:13:53
907000 -- [-38302.121] (-38304.860) (-38306.284) (-38301.753) * (-38299.496) (-38308.963) [-38306.185] (-38307.565) -- 0:13:44
908000 -- (-38310.024) [-38304.248] (-38312.006) (-38304.494) * [-38293.838] (-38306.469) (-38315.152) (-38304.070) -- 0:13:35
909000 -- (-38315.234) (-38311.975) (-38319.477) [-38306.241] * (-38303.017) (-38314.429) (-38310.304) [-38308.139] -- 0:13:26
910000 -- [-38306.431] (-38314.883) (-38303.011) (-38310.704) * [-38307.933] (-38304.735) (-38304.055) (-38320.565) -- 0:13:18
Average standard deviation of split frequencies: 0.001035
911000 -- (-38303.965) (-38316.469) (-38301.627) [-38308.090] * (-38301.614) (-38309.279) (-38307.255) [-38304.545] -- 0:13:09
912000 -- (-38301.516) (-38321.438) (-38305.885) [-38306.122] * (-38299.656) (-38308.992) [-38300.024] (-38311.482) -- 0:13:00
913000 -- [-38301.909] (-38309.883) (-38310.389) (-38307.632) * [-38304.270] (-38303.018) (-38316.851) (-38308.960) -- 0:12:51
914000 -- (-38297.662) [-38307.615] (-38309.244) (-38318.207) * (-38302.132) [-38300.926] (-38299.877) (-38309.900) -- 0:12:42
915000 -- (-38305.585) (-38304.931) [-38306.950] (-38310.663) * (-38314.225) (-38300.792) (-38305.111) [-38315.655] -- 0:12:33
Average standard deviation of split frequencies: 0.000961
916000 -- (-38308.878) (-38309.846) [-38297.903] (-38314.454) * [-38304.547] (-38309.200) (-38308.025) (-38311.850) -- 0:12:24
917000 -- (-38306.288) (-38310.499) [-38308.818] (-38311.258) * (-38314.108) (-38311.760) (-38310.307) [-38308.371] -- 0:12:15
918000 -- (-38310.381) (-38306.875) [-38295.952] (-38321.764) * [-38306.022] (-38311.103) (-38309.645) (-38311.457) -- 0:12:07
919000 -- (-38320.138) [-38299.987] (-38308.842) (-38303.443) * [-38302.494] (-38311.118) (-38316.803) (-38307.346) -- 0:11:58
920000 -- (-38312.258) (-38314.352) (-38316.425) [-38298.371] * (-38298.107) (-38306.956) (-38304.353) [-38297.767] -- 0:11:49
Average standard deviation of split frequencies: 0.000922
921000 -- (-38306.421) (-38306.995) [-38301.096] (-38303.887) * [-38304.925] (-38307.900) (-38315.193) (-38306.580) -- 0:11:40
922000 -- (-38309.199) [-38307.435] (-38303.995) (-38314.939) * [-38295.942] (-38296.946) (-38312.022) (-38306.848) -- 0:11:31
923000 -- (-38308.142) (-38302.014) [-38301.811] (-38310.013) * (-38308.824) (-38310.598) (-38309.712) [-38306.454] -- 0:11:22
924000 -- [-38311.628] (-38319.983) (-38303.538) (-38310.274) * (-38305.692) (-38305.613) (-38314.045) [-38296.056] -- 0:11:13
925000 -- (-38312.453) [-38304.936] (-38308.721) (-38308.365) * [-38302.547] (-38315.125) (-38311.178) (-38298.293) -- 0:11:05
Average standard deviation of split frequencies: 0.000984
926000 -- [-38302.265] (-38315.302) (-38302.208) (-38308.497) * (-38306.126) [-38300.308] (-38310.897) (-38308.232) -- 0:10:56
927000 -- (-38311.693) (-38307.475) [-38295.263] (-38322.307) * (-38309.516) (-38310.731) (-38309.077) [-38303.698] -- 0:10:47
928000 -- (-38309.824) (-38302.928) [-38302.967] (-38312.069) * (-38307.229) (-38305.514) [-38302.948] (-38305.754) -- 0:10:38
929000 -- (-38321.070) (-38314.809) (-38317.113) [-38300.270] * (-38312.316) (-38304.710) (-38304.749) [-38300.161] -- 0:10:29
930000 -- (-38325.198) (-38313.267) [-38316.709] (-38298.274) * (-38304.404) [-38307.647] (-38308.638) (-38320.557) -- 0:10:20
Average standard deviation of split frequencies: 0.001081
931000 -- (-38306.158) (-38305.834) (-38307.983) [-38301.903] * (-38311.466) [-38300.885] (-38322.340) (-38306.641) -- 0:10:11
932000 -- (-38310.701) [-38302.822] (-38310.509) (-38303.665) * (-38312.561) (-38317.808) (-38300.560) [-38299.082] -- 0:10:02
933000 -- (-38319.184) [-38300.920] (-38305.676) (-38304.780) * (-38305.572) [-38305.640] (-38303.287) (-38305.564) -- 0:09:54
934000 -- (-38307.937) [-38304.447] (-38304.454) (-38307.723) * [-38298.792] (-38310.361) (-38298.481) (-38301.927) -- 0:09:45
935000 -- (-38298.464) (-38316.937) (-38310.034) [-38309.149] * (-38298.589) (-38303.914) (-38307.455) [-38307.997] -- 0:09:36
Average standard deviation of split frequencies: 0.001041
936000 -- (-38297.435) [-38306.441] (-38310.137) (-38316.655) * (-38301.810) (-38306.269) (-38305.893) [-38314.732] -- 0:09:27
937000 -- (-38303.296) (-38313.311) [-38302.858] (-38314.412) * (-38310.519) [-38308.334] (-38312.215) (-38303.021) -- 0:09:18
938000 -- (-38303.029) (-38305.407) (-38316.246) [-38306.243] * (-38303.563) [-38311.924] (-38315.078) (-38305.543) -- 0:09:09
939000 -- [-38306.784] (-38300.511) (-38316.733) (-38312.618) * [-38302.449] (-38322.113) (-38303.787) (-38315.659) -- 0:09:00
940000 -- (-38307.464) (-38310.090) (-38314.645) [-38303.502] * (-38306.106) (-38316.334) [-38296.629] (-38301.289) -- 0:08:52
Average standard deviation of split frequencies: 0.001036
941000 -- (-38310.590) (-38303.933) (-38300.815) [-38302.443] * (-38304.279) (-38309.204) (-38305.165) [-38318.128] -- 0:08:43
942000 -- [-38301.331] (-38319.034) (-38306.967) (-38299.903) * [-38309.233] (-38306.085) (-38296.759) (-38315.491) -- 0:08:34
943000 -- (-38300.646) (-38319.309) [-38303.911] (-38300.854) * [-38305.392] (-38308.647) (-38318.247) (-38301.811) -- 0:08:25
944000 -- (-38304.752) (-38311.500) (-38313.832) [-38303.843] * (-38300.562) (-38312.087) [-38312.769] (-38310.999) -- 0:08:16
945000 -- (-38304.595) (-38307.280) [-38303.001] (-38315.911) * (-38302.745) (-38317.329) [-38313.632] (-38301.654) -- 0:08:07
Average standard deviation of split frequencies: 0.001130
946000 -- (-38308.338) [-38308.352] (-38308.054) (-38317.264) * (-38301.863) (-38313.917) [-38299.422] (-38309.567) -- 0:07:58
947000 -- (-38305.405) (-38301.725) [-38308.829] (-38312.388) * (-38306.553) (-38304.872) [-38308.115] (-38315.717) -- 0:07:49
948000 -- (-38319.662) (-38307.691) [-38305.681] (-38313.223) * (-38307.011) (-38308.962) [-38296.597] (-38321.402) -- 0:07:41
949000 -- (-38313.071) [-38298.550] (-38310.086) (-38312.865) * (-38310.035) [-38313.399] (-38304.669) (-38308.048) -- 0:07:32
950000 -- (-38314.682) [-38296.502] (-38304.723) (-38314.967) * (-38304.228) (-38308.026) (-38306.613) [-38299.520] -- 0:07:23
Average standard deviation of split frequencies: 0.001157
951000 -- [-38303.455] (-38304.222) (-38316.810) (-38313.344) * (-38298.587) (-38316.891) [-38311.141] (-38325.524) -- 0:07:14
952000 -- [-38305.233] (-38311.932) (-38307.323) (-38302.652) * (-38301.075) (-38306.637) [-38302.420] (-38326.064) -- 0:07:05
953000 -- [-38307.847] (-38315.320) (-38303.423) (-38310.561) * [-38300.958] (-38303.618) (-38309.265) (-38303.594) -- 0:06:56
954000 -- [-38306.453] (-38317.589) (-38305.536) (-38314.147) * (-38314.886) (-38310.203) (-38303.780) [-38296.820] -- 0:06:47
955000 -- (-38301.264) (-38311.227) (-38314.272) [-38301.108] * (-38309.248) [-38313.386] (-38306.988) (-38303.206) -- 0:06:39
Average standard deviation of split frequencies: 0.001183
956000 -- [-38301.113] (-38299.438) (-38316.856) (-38312.486) * (-38311.670) (-38309.520) [-38300.833] (-38311.121) -- 0:06:30
957000 -- (-38309.837) (-38309.970) [-38290.875] (-38307.180) * (-38311.193) (-38316.614) [-38298.385] (-38301.374) -- 0:06:21
958000 -- [-38306.082] (-38308.755) (-38308.152) (-38301.264) * [-38309.693] (-38311.906) (-38306.183) (-38308.876) -- 0:06:12
959000 -- (-38307.958) [-38300.188] (-38312.373) (-38300.644) * [-38300.781] (-38304.261) (-38300.810) (-38306.931) -- 0:06:03
960000 -- (-38304.934) [-38301.001] (-38313.995) (-38323.338) * [-38304.165] (-38306.841) (-38299.982) (-38319.334) -- 0:05:54
Average standard deviation of split frequencies: 0.001178
961000 -- (-38304.254) [-38295.563] (-38302.772) (-38329.370) * [-38303.282] (-38305.191) (-38298.926) (-38314.403) -- 0:05:45
962000 -- (-38299.948) (-38304.719) (-38313.109) [-38303.202] * (-38307.321) (-38307.533) [-38300.827] (-38306.706) -- 0:05:36
963000 -- (-38304.696) (-38309.778) (-38306.645) [-38303.669] * (-38309.855) [-38306.884] (-38307.930) (-38299.122) -- 0:05:28
964000 -- (-38316.906) [-38298.889] (-38302.738) (-38304.211) * (-38311.025) (-38305.678) (-38306.193) [-38301.834] -- 0:05:19
965000 -- (-38310.757) [-38305.141] (-38304.792) (-38301.181) * [-38302.207] (-38319.921) (-38311.349) (-38306.551) -- 0:05:10
Average standard deviation of split frequencies: 0.001236
966000 -- (-38316.655) (-38314.659) (-38306.825) [-38312.302] * (-38300.120) [-38301.767] (-38309.943) (-38317.419) -- 0:05:01
967000 -- (-38305.058) (-38312.417) [-38307.789] (-38317.119) * (-38308.141) (-38307.282) [-38306.079] (-38315.591) -- 0:04:52
968000 -- (-38303.459) (-38300.325) [-38300.503] (-38305.919) * (-38296.689) [-38301.812] (-38306.529) (-38317.478) -- 0:04:43
969000 -- (-38309.858) [-38299.803] (-38304.588) (-38317.348) * (-38299.362) (-38307.552) (-38308.047) [-38307.815] -- 0:04:34
970000 -- (-38303.523) (-38298.296) [-38301.691] (-38312.293) * (-38304.142) (-38307.243) (-38312.839) [-38300.625] -- 0:04:26
Average standard deviation of split frequencies: 0.001133
971000 -- (-38312.221) (-38304.773) [-38299.825] (-38316.155) * (-38307.305) [-38308.586] (-38303.172) (-38297.974) -- 0:04:17
972000 -- (-38313.752) (-38306.733) [-38303.157] (-38304.358) * (-38298.763) [-38305.266] (-38317.766) (-38307.849) -- 0:04:08
973000 -- (-38304.352) (-38306.673) [-38298.617] (-38312.152) * (-38306.850) [-38306.251] (-38315.069) (-38305.929) -- 0:03:59
974000 -- [-38303.956] (-38307.404) (-38299.807) (-38317.936) * (-38300.196) (-38304.807) [-38303.868] (-38310.636) -- 0:03:50
975000 -- [-38294.216] (-38313.939) (-38313.949) (-38315.304) * [-38324.266] (-38304.157) (-38307.021) (-38297.595) -- 0:03:41
Average standard deviation of split frequencies: 0.001191
976000 -- [-38302.448] (-38300.421) (-38305.412) (-38312.060) * (-38310.390) (-38311.316) [-38305.075] (-38316.447) -- 0:03:32
977000 -- [-38300.535] (-38301.978) (-38320.957) (-38298.896) * (-38312.725) (-38307.988) [-38303.020] (-38313.150) -- 0:03:23
978000 -- (-38305.571) (-38302.125) (-38309.849) [-38293.678] * [-38295.889] (-38299.886) (-38311.268) (-38305.088) -- 0:03:15
979000 -- (-38311.301) [-38304.087] (-38313.584) (-38307.676) * [-38295.441] (-38305.361) (-38323.426) (-38299.458) -- 0:03:06
980000 -- (-38300.870) (-38313.287) (-38320.424) [-38301.240] * (-38306.116) (-38311.515) (-38322.108) [-38307.270] -- 0:02:57
Average standard deviation of split frequencies: 0.001218
981000 -- (-38306.078) (-38312.611) [-38313.065] (-38307.864) * (-38313.852) (-38306.629) [-38304.038] (-38297.008) -- 0:02:48
982000 -- (-38305.470) (-38311.307) [-38307.588] (-38311.194) * (-38306.083) (-38310.855) [-38301.654] (-38311.474) -- 0:02:39
983000 -- (-38311.372) (-38315.809) [-38305.777] (-38308.856) * (-38320.055) (-38302.138) (-38302.022) [-38303.213] -- 0:02:30
984000 -- (-38312.045) (-38303.911) (-38328.090) [-38302.259] * (-38309.774) [-38313.446] (-38313.907) (-38312.572) -- 0:02:21
985000 -- (-38312.569) [-38302.086] (-38314.699) (-38306.856) * (-38309.568) [-38300.812] (-38319.515) (-38313.167) -- 0:02:13
Average standard deviation of split frequencies: 0.001116
986000 -- (-38317.728) (-38322.468) (-38307.912) [-38299.151] * (-38303.284) [-38300.691] (-38314.337) (-38307.729) -- 0:02:04
987000 -- (-38300.645) [-38306.813] (-38315.737) (-38300.155) * (-38307.691) (-38305.849) (-38308.820) [-38305.908] -- 0:01:55
988000 -- [-38306.544] (-38314.005) (-38317.298) (-38307.321) * [-38312.493] (-38301.749) (-38308.967) (-38303.079) -- 0:01:46
989000 -- [-38308.522] (-38305.317) (-38304.420) (-38307.927) * (-38301.852) (-38306.332) [-38310.626] (-38309.786) -- 0:01:37
990000 -- (-38309.659) [-38300.297] (-38305.465) (-38312.513) * (-38298.116) [-38302.283] (-38301.355) (-38309.985) -- 0:01:28
Average standard deviation of split frequencies: 0.001079
991000 -- (-38304.589) [-38307.870] (-38323.514) (-38309.324) * [-38301.140] (-38307.348) (-38313.492) (-38303.697) -- 0:01:19
992000 -- (-38307.090) [-38295.845] (-38325.757) (-38309.824) * [-38304.433] (-38310.897) (-38308.343) (-38305.392) -- 0:01:10
993000 -- [-38317.076] (-38296.400) (-38317.543) (-38306.126) * (-38301.852) [-38302.144] (-38312.787) (-38311.227) -- 0:01:02
994000 -- (-38313.251) (-38303.960) [-38316.796] (-38303.776) * [-38308.401] (-38308.346) (-38309.686) (-38307.815) -- 0:00:53
995000 -- (-38307.067) (-38309.792) (-38307.331) [-38297.825] * (-38298.758) (-38302.892) [-38310.118] (-38311.138) -- 0:00:44
Average standard deviation of split frequencies: 0.001136
996000 -- (-38313.954) (-38323.512) (-38313.106) [-38294.218] * (-38307.723) (-38304.188) [-38302.616] (-38317.499) -- 0:00:35
997000 -- [-38303.681] (-38318.933) (-38311.260) (-38307.148) * (-38316.943) (-38300.416) (-38319.794) [-38304.509] -- 0:00:26
998000 -- (-38311.987) (-38321.600) (-38315.683) [-38300.686] * (-38299.745) (-38312.896) [-38311.307] (-38306.178) -- 0:00:17
999000 -- [-38302.818] (-38316.061) (-38302.747) (-38312.402) * [-38298.633] (-38320.419) (-38305.906) (-38311.278) -- 0:00:08
1000000 -- (-38297.266) (-38312.635) (-38304.568) [-38312.476] * (-38307.090) (-38313.697) (-38312.737) [-38308.029] -- 0:00:00
Average standard deviation of split frequencies: 0.001131
Analysis completed in 2 hours 27 mins 47 seconds
Analysis used 8858.13 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -38290.08
Likelihood of best state for "cold" chain of run 2 was -38290.08
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
8.4 % ( 21 %) Dirichlet(Revmat{all})
26.8 % ( 22 %) Slider(Revmat{all})
2.5 % ( 4 %) Dirichlet(Pi{all})
14.2 % ( 19 %) Slider(Pi{all})
23.1 % ( 23 %) Multiplier(Alpha{1,2})
29.2 % ( 24 %) Multiplier(Alpha{3})
22.9 % ( 15 %) Slider(Pinvar{all})
0.3 % ( 0 %) ExtSPR(Tau{all},V{all})
0.4 % ( 0 %) ExtTBR(Tau{all},V{all})
0.5 % ( 0 %) NNI(Tau{all},V{all})
0.4 % ( 0 %) ParsSPR(Tau{all},V{all})
25.5 % ( 26 %) Multiplier(V{all})
9.9 % ( 10 %) Nodeslider(V{all})
21.8 % ( 24 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
9.1 % ( 18 %) Dirichlet(Revmat{all})
26.2 % ( 20 %) Slider(Revmat{all})
2.2 % ( 1 %) Dirichlet(Pi{all})
14.0 % ( 29 %) Slider(Pi{all})
22.5 % ( 24 %) Multiplier(Alpha{1,2})
29.6 % ( 25 %) Multiplier(Alpha{3})
23.1 % ( 22 %) Slider(Pinvar{all})
0.3 % ( 0 %) ExtSPR(Tau{all},V{all})
0.4 % ( 0 %) ExtTBR(Tau{all},V{all})
0.5 % ( 1 %) NNI(Tau{all},V{all})
0.4 % ( 1 %) ParsSPR(Tau{all},V{all})
25.6 % ( 29 %) Multiplier(V{all})
9.8 % ( 6 %) Nodeslider(V{all})
21.6 % ( 28 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.74 0.53 0.36
2 | 166459 0.76 0.56
3 | 167084 167603 0.78
4 | 165785 166434 166635
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.74 0.52 0.36
2 | 167166 0.76 0.56
3 | 166987 166766 0.78
4 | 166602 165866 166613
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -38301.65
| 1 2 1 2 2 1 |
| 1 2 |
| 1 1 2 |
| 2 2 2 2 1 |
| 2 21 2 1 2 * 1 11 2 2 22 1 |
|1 22 1 2 1 2 1 1 2 1 1 2|
|21 2 1 2 21 1 222 1 1 2 2 2 |
| 222 1 1 2 1 1 2 1 2 1 |
| * 2 1 1 1 2 1 |
| 1 1 1 11 2 2 21 11 1 2 1|
| 1 2 1 1 1 2 2 |
| 1 2 2 2 1 2 2 1 |
| 2 1 2 1 2 |
| 2 1 1 |
| 2 1 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -38307.30
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -38296.85 -38323.72
2 -38297.42 -38317.18
--------------------------------------
TOTAL -38297.10 -38323.03
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 12.191370 0.253817 11.260690 13.228550 12.167430 975.63 1001.22 1.000
r(A<->C){all} 0.183219 0.000062 0.167590 0.198598 0.183211 629.62 707.83 1.000
r(A<->G){all} 0.273267 0.000083 0.255312 0.290896 0.273275 505.46 638.89 1.000
r(A<->T){all} 0.095222 0.000020 0.086428 0.103780 0.095165 720.44 732.71 1.001
r(C<->G){all} 0.120675 0.000051 0.106055 0.133971 0.120581 403.10 558.46 1.000
r(C<->T){all} 0.269113 0.000071 0.252563 0.285623 0.269181 584.50 619.44 1.000
r(G<->T){all} 0.058504 0.000015 0.050880 0.066178 0.058495 679.28 731.06 1.000
pi(A){all} 0.248047 0.000015 0.240608 0.255776 0.248049 558.32 654.40 1.000
pi(C){all} 0.190615 0.000011 0.184394 0.197261 0.190562 599.53 696.82 1.002
pi(G){all} 0.196179 0.000015 0.188885 0.203919 0.196163 445.37 518.63 1.000
pi(T){all} 0.365159 0.000022 0.355751 0.374158 0.365217 510.32 573.28 1.000
alpha{1,2} 0.526090 0.000547 0.481730 0.571855 0.525339 1042.97 1114.56 1.000
alpha{3} 4.596523 0.389216 3.333183 5.731727 4.550862 1106.27 1219.07 1.000
pinvar{all} 0.003678 0.000007 0.000005 0.008373 0.003185 926.92 1150.32 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C1
2 -- C10
3 -- C11
4 -- C12
5 -- C13
6 -- C14
7 -- C15
8 -- C16
9 -- C17
10 -- C18
11 -- C2
12 -- C3
13 -- C4
14 -- C5
15 -- C6
16 -- C7
17 -- C8
18 -- C9
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
------------------------
1 -- .*****************
2 -- .*................
3 -- ..*...............
4 -- ...*..............
5 -- ....*.............
6 -- .....*............
7 -- ......*...........
8 -- .......*..........
9 -- ........*.........
10 -- .........*........
11 -- ..........*.......
12 -- ...........*......
13 -- ............*.....
14 -- .............*....
15 -- ..............*...
16 -- ...............*..
17 -- ................*.
18 -- .................*
19 -- .*..........**.***
20 -- ..***.........*...
21 -- .*...............*
22 -- ............**....
23 -- ..*...........*...
24 -- .*...*..**..**.***
25 -- ...**.............
26 -- ..........**......
27 -- .....*...*........
28 -- .....*..**........
29 -- .*****.***********
30 -- .*****..**..******
31 -- .*.............*.*
32 -- .*.............***
33 -- .*****..**********
------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
19 3002 1.000000 0.000000 1.000000 1.000000 2
20 3002 1.000000 0.000000 1.000000 1.000000 2
21 3002 1.000000 0.000000 1.000000 1.000000 2
22 3002 1.000000 0.000000 1.000000 1.000000 2
23 3002 1.000000 0.000000 1.000000 1.000000 2
24 3002 1.000000 0.000000 1.000000 1.000000 2
25 3002 1.000000 0.000000 1.000000 1.000000 2
26 3002 1.000000 0.000000 1.000000 1.000000 2
27 3002 1.000000 0.000000 1.000000 1.000000 2
28 3002 1.000000 0.000000 1.000000 1.000000 2
29 3002 1.000000 0.000000 1.000000 1.000000 2
30 3002 1.000000 0.000000 1.000000 1.000000 2
31 2992 0.996669 0.000942 0.996003 0.997335 2
32 2865 0.954364 0.007066 0.949367 0.959360 2
33 2671 0.889740 0.008951 0.883411 0.896069 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.007969 0.000005 0.003724 0.012221 0.007829 1.000 2
length{all}[2] 0.051704 0.000086 0.033111 0.069522 0.051341 1.000 2
length{all}[3] 0.504807 0.001637 0.429792 0.585817 0.504134 1.001 2
length{all}[4] 0.190066 0.000552 0.144212 0.236460 0.189620 1.000 2
length{all}[5] 0.096596 0.000441 0.054654 0.137086 0.096375 1.000 2
length{all}[6] 0.325030 0.000847 0.270729 0.382154 0.323904 1.001 2
length{all}[7] 0.003564 0.000003 0.000444 0.006649 0.003326 1.000 2
length{all}[8] 0.058386 0.000073 0.042036 0.074248 0.058258 1.001 2
length{all}[9] 0.473914 0.002772 0.379768 0.580996 0.474138 1.000 2
length{all}[10] 0.393457 0.000950 0.335133 0.455782 0.393552 1.000 2
length{all}[11] 0.000508 0.000000 0.000001 0.001537 0.000347 1.000 2
length{all}[12] 0.000509 0.000000 0.000001 0.001522 0.000368 1.000 2
length{all}[13] 0.068046 0.000289 0.033906 0.099152 0.067997 1.000 2
length{all}[14] 0.091683 0.000308 0.059927 0.128452 0.091525 1.000 2
length{all}[15] 0.440987 0.001444 0.372385 0.519700 0.439348 1.000 2
length{all}[16] 0.499449 0.001224 0.429499 0.568634 0.498042 1.000 2
length{all}[17] 0.429456 0.001408 0.355631 0.501104 0.428368 1.000 2
length{all}[18] 0.045248 0.000084 0.026522 0.062640 0.044958 1.000 2
length{all}[19] 2.319413 0.055620 1.903368 2.811337 2.303904 1.000 2
length{all}[20] 0.843741 0.010195 0.650673 1.040753 0.838605 1.000 2
length{all}[21] 0.354132 0.000939 0.295924 0.414700 0.353301 1.000 2
length{all}[22] 0.720667 0.008199 0.551393 0.903618 0.715287 1.000 2
length{all}[23] 0.322480 0.002735 0.218709 0.423878 0.320886 1.000 2
length{all}[24] 0.520699 0.010256 0.329068 0.716038 0.516685 1.000 2
length{all}[25] 0.453050 0.003133 0.335837 0.561045 0.452598 1.000 2
length{all}[26] 0.220232 0.001592 0.142269 0.295785 0.219035 1.000 2
length{all}[27] 0.173748 0.002003 0.089992 0.263451 0.170907 1.000 2
length{all}[28] 0.919291 0.014419 0.689310 1.159815 0.913929 1.000 2
length{all}[29] 0.095804 0.000166 0.071351 0.121742 0.096780 1.000 2
length{all}[30] 1.188597 0.012653 0.963268 1.397374 1.185075 1.000 2
length{all}[31] 0.123065 0.000815 0.069395 0.179734 0.123107 1.000 2
length{all}[32] 0.194586 0.005106 0.051966 0.329405 0.191907 1.000 2
length{all}[33] 0.071879 0.001025 0.014120 0.134981 0.069783 1.001 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.001131
Maximum standard deviation of split frequencies = 0.008951
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.001
Clade credibility values:
/---------------------------------------------------------------------- C1 (1)
|
|---------------------------------------------------------------------- C15 (7)
|
| /-------- C10 (2)
| /--100--+
| | \-------- C9 (18)
| /--100-+
| | \---------------- C7 (16)
| /---95--+
| | \----------------------- C8 (17)
| /--100--+
| | | /-------- C4 (13)
| | \----------100---------+
| | \-------- C5 (14)
+ /--100--+
| | | /-------- C14 (6)
| | | /--100--+
| | | | \-------- C18 (10)
| | \----------100---------+
| /--100-+ \---------------- C17 (9)
| | |
| | | /-------- C11 (3)
| | | /--100--+
| | | | \-------- C6 (15)
| | \--------------100-------------+
| /---89--+ | /-------- C12 (4)
| | | \--100--+
| | | \-------- C13 (5)
| | |
\--100--+ | /-------- C2 (11)
| \---------------------100---------------------+
| \-------- C3 (12)
|
\-------------------------------------------------------------- C16 (8)
Phylogram (based on average branch lengths):
/ C1 (1)
|
| C15 (7)
|
| /- C10 (2)
| /----+
| | \- C9 (18)
| /-+
| | \------- C7 (16)
| /--+
| | \------ C8 (17)
| /-------------------------------+
| | | /- C4 (13)
| | \----------+
| | \- C5 (14)
+ /-------+
| | | /----- C14 (6)
| | | /-+
| | | | \------ C18 (10)
| | \------------+
| /----------------+ \------ C17 (9)
| | |
| | | /------- C11 (3)
| | | /----+
| | | | \------ C6 (15)
| | \-----------+
|/+ | /-- C12 (4)
||| \------+
||| \- C13 (5)
|||
\+| / C2 (11)
|\--+
| \ C3 (12)
|
\- C16 (8)
|-------------| 1.000 expected changes per site
Calculating tree probabilities...
Credible sets of trees (11 trees sampled):
90 % credible set contains 2 trees
95 % credible set contains 3 trees
99 % credible set contains 5 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
Running FUBAR...
[2J[H /HYPHY 2.3.14.20190214beta(MP) for Linux on x86_64\
***************** TYPES OF STANDARD ANALYSES *****************
(1) Selection Analyses
(2) Evolutionary Hypothesis Testing
(3) Relative evolutionary rate inference
(4) Coevolutionary analysis
(5) Basic Analyses
(6) Codon Selection Analyses
(7) Compartmentalization
(8) Data File Tools
(9) Miscellaneous
(10) Model Comparison
(11) Kernel Analysis Tools
(12) Molecular Clock
(13) Phylogeny Reconstruction
(14) Positive Selection
(15) Recombination
(16) Selection/Recombination
(17) Relative Rate
(18) Relative Ratio
(19) Substitution Rates
Please select type of analyses you want to list (or press ENTER to process custom batch file):[2J[H***************** FILES IN 'Selection Analyses' *****************
(1) [MEME] Test for episodic site-level selection using MEME (Mixed Effects Model of Evolution).
(2) [FEL] Test for pervasive site-level selection using FEL (Fixed Effects Likelihood).
(3) [SLAC] Test for pervasive site-level selection using SLAC (Single Likelihood Ancestor Counting).
(4) [FUBAR] Test for pervasive site-level selection using FUBAR (Fast Unconstrained Bayesian AppRoximation for inferring selection).
(5) [BUSTED] Test for episodic gene-wide selection using BUSTED (Branch-site Unrestricted Statistical Test of Episodic Diversification).
(6) [aBSREL] Test for lineage-specific evolution using the branch-site method aBS-REL (Adaptive Branch-Site Random Effects Likelihood).
(7) [RELAX] Test for relaxation of selection pressure along a specified set of test branches using RELAX (a random effects test of selection relaxation).
Please select the analysis you would like to perform (or press ENTER to return to the list of analysis types):
Analysis Description
--------------------
Perform a Fast Unbiased AppRoximate Bayesian (FUBAR) analysis of a
coding sequence alignment to determine whether some sites have been
subject to pervasive purifying or diversifying selection. v2.1
introduces two more methods for estimating the posterior distribution of
grid weights: collapsed Gibbs MCMC (faster) and 0-th order Variation
Bayes approximation (fastest). Please note that a FUBAR analysis
generates a cache and a results JSON file in the same directory as
directory as the original alignment. HyPhy needs to have write
privileges to this directory. For example if the original file is in
/home/sergei/FUBAR/data/pol.nex then at the end of a FUBAR run, there
will also exist FUBAR-generated files
/home/sergei/FUBAR/data/pol.nex.FUBAR.json,
/home/sergei/FUBAR/data/pol.nex.fubrar.cache. They also provide
checkpointing so that a partially completed analysis can be restarted.
- __Requirements__: in-frame codon alignment (possibly partitioned) and a phylogenetic tree
(one per partition)
- __Citation__: FUBAR: a fast, unconstrained bayesian approximation for inferring
selection (2013), Mol Biol Evol. 30(5):1196-205
- __Written by__: Sergei L Kosakovsky Pond
- __Contact Information__: spond@temple.edu
- __Analysis Version__: 2.1
####Choose Genetic Code
1. [**Universal**] Universal code. (Genebank transl_table=1).
2. [**Vertebrate mtDNA**] Vertebrate mitochondrial DNA code. (Genebank transl_table=2).
3. [**Yeast mtDNA**] Yeast mitochondrial DNA code. (Genebank transl_table=3).
4. [**Mold/Protozoan mtDNA**] Mold, Protozoan and Coelenterate mitochondrial DNA and the Mycloplasma/Spiroplasma code. (Genebank transl_table=4).
5. [**Invertebrate mtDNA**] Invertebrate mitochondrial DNA code. (Genebank transl_table=5).
6. [**Ciliate Nuclear**] Ciliate, Dasycladacean and Hexamita Nuclear code. (Genebank transl_table=6).
7. [**Echinoderm mtDNA**] Echinoderm mitochondrial DNA code. (Genebank transl_table=9).
8. [**Euplotid Nuclear**] Euplotid Nuclear code. (Genebank transl_table=10).
9. [**Alt. Yeast Nuclear**] Alternative Yeast Nuclear code. (Genebank transl_table=12).
10. [**Ascidian mtDNA**] Ascidian mitochondrial DNA code. (Genebank transl_table=13).
11. [**Flatworm mtDNA**] Flatworm mitochondrial DNA code. (Genebank transl_table=14).
12. [**Blepharisma Nuclear**] Blepharisma Nuclear code. (Genebank transl_table=15).
13. [**Chlorophycean mtDNA**] Chlorophycean Mitochondrial Code (transl_table=16).
14. [**Trematode mtDNA**] Trematode Mitochondrial Code (transl_table=21).
15. [**Scenedesmus obliquus mtDNA**] Scenedesmus obliquus mitochondrial Code (transl_table=22).
16. [**Thraustochytrium mtDNA**] Thraustochytrium Mitochondrial Code (transl_table=23).
17. [**Pterobranchia mtDNA**] Pterobranchia Mitochondrial Code (transl_table=24).
18. [**SR1 and Gracilibacteria**] Candidate Division SR1 and Gracilibacteria Code (transl_table=25).
19. [**Pachysolen Nuclear**] Pachysolen tannophilus Nuclear Code (transl_table=26).
>Please choose an option (or press q to cancel selection):
>Select a coding sequence alignment file (`/usr/local/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/`)
>A tree was found in the data file: `(C1,C15,((((((((C10,C9),C7),C8),(C4,C5)),((C14,C18),C17)),((C11,C6),(C12,C13))),(C2,C3)),C16))`
>Would you like to use it (y/n)?
>Loaded a multiple sequence alignment with **18** sequences, **1552** codons, and **1** partitions from `/data//pss_subsets/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result/original_alignment/fubar/results/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result.1/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result.1.fna`
> FUBAR will write cache and result files to _/data//pss_subsets/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result/original_alignment/fubar/results/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result.1/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result.1.fna.FUBAR.cache_ and _/data//pss_subsets/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result/original_alignment/fubar/results/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result.1/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result.1.fna.FUBAR.json_, respectively
> Number of grid points per dimension (total number is D^2) (permissible range = [5,50], default value = 20, integer):
####Posterior estimation method
1. [**Metropolis-Hastings**] Full Metropolis-Hastings MCMC algorithm (slowest, original 2013 paper implementation)
2. [**Collapsed Gibbs**] Collapsed Gibbs sampler (intermediate speed)
3. [**Variational Bayes**] 0-th order Variational Bayes approximations (fastest, recommended default)
>Please choose an option (or press q to cancel selection):> The concentration parameter of the Dirichlet prior (permissible range = [0.001,1], default value = 0.5):
### Obtaining branch lengths and nucleotide substitution biases under the nucleotide GTR model
* Log(L) = -58853.15, AIC-c = 117788.34 (41 estimated parameters)
* Tree length (expected substitutions/site) for partition 1 : 5.228
### Computing the phylogenetic likelihood function on the grid
* Determining appropriate tree scaling based on the best score from a 20 x 20 rate grid
* Best scaling achieved for
* synonymous rate = 2.815
* non-synonymous rate = 0.643
* Computing conditional site likelihoods on a 20 x 20 rate grid
### Running an iterative zeroth order variational Bayes procedure to estimate the posterior mean of rate weights
* Using the following settings
* Dirichlet alpha : 0.5
### Tabulating site-level results
| Codon | Partition | alpha | beta |Posterior prob for positive selection|
|:--------------:|:--------------:|:--------------:|:--------------:|:-----------------------------------:|
| 26 | 1 | 4.409 | 26.599 | Pos. posterior = 0.9049 |
| 35 | 1 | 1.011 | 14.852 | Pos. posterior = 0.9743 |
----
## FUBAR inferred 2 sites subject to diversifying positive selection at posterior probability >= 0.9
Of these, 0.12 are expected to be false positives (95% confidence interval of 0-1 )
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.15 sec, SCORE=998, Nseq=18, Len=1552
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus ---MFIVFLISYTTFLIPY-------------TATTTCFSGPTTENK-LN
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus -----MLILFVFLPFITAD-----------------TCLNFTNLAAPAYN
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus -----MLILFVFLPFITAD-----------------TCLNFTNLAAPAYN
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus MLRNKKFLSLFVFSVVLPCAY-----------SNTGTCSNTINRFMY-LK
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus MLRNKKFLSLFVFSVVLPCAY-----------SNTGTCSSTINRFMY-LK
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus ----MWAILLILPAVLA------RPSCI-KS-SVSLSSIEHNVTYQS-FV
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus -MILSLLLLVIAVCVNNNYAWLGLQRNAIPPSNQDGECGGDPGKLPN-LN
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus ----MLFLAVYAAELLVLITQIPAVFSYG---GERFTCSPNYASLPN-LN
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus ----MLSLAVYFAELLVIISYLPDLVT-----GDLNGCADGHNRLPN-LN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 ----MLSLAIYIAEILAFLQ-LPDLTTGAP--NKDGDCGDGYNRLPN-LN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 ----MLLTVVLSLALIACDASATRPECFANS-NFQLYPRNHTVNITS-LS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 ----MVVLLFVMFSLVVAD----RPNCYLP--QYSYTISPATITNTSYFN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 ----MVVLLFAILSIALAD----RPLCTINTGNYVLNPIQANITYTVVNS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 ----MTRLMCLLMSLLIFVRGCEAQFVDMSPASNNSECLDSQVDAAAFSK
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 ---MFIVFLISYTTFLIPY-------------TATTTCFSGPTIENK-LN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 ----MKILIFAFLVTLV---------------KAQEGCGVINLKTQPTLT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 -MTYSVSLLMCLLTFIGAN----AKIVSIPGGVGTGACPQVDMQPSYFIK
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 ----MTHLMFLLMFLLTPI----RGDVDLGPDSTRDTCDEVVVQVSA-FQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus IS-------SGSRGVY-YPDDIFR---------S-NVSVLVTGRFLRFNT
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus IA------SSSRRGVY-YPDDIFR---------S-DFLHLVNDYFLPFGS
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus IA------SSSRRGVY-YPDDIFR---------S-DFLHLVNDYFLPFGS
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus LGLPESVNDAYVSGYLPVRDNWTCS------AGF-WQYYNAHAIFMSYYS
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus LGLPESVNDAYVSGYLPVRDNWTCS------AGF-WQYYNAHAIFMSYYS
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus LS---------KVSCL-LPDPFIA----------YSGQTLKQSIYYADTT
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus LGLPPN-KTVFVSGYLPLHKGWVCPTHPLGGGGYGTTFNDIHAIYWSYHS
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus LGLPPN-STVLVSGYLPRPGDWVC------YTGT-TTHDNIRGVFWSYYS
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus LGLPPN-STVFVSGYLPRKNGWECPTINNQYGGS-TNYENVHGIFWSYHS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 LGLPPN-STVFVSGYLPQKTGWVCP--ENKEAGA-TSYEGVHGVFWSYYA
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 VN---------VANLL-LPDPYIA----------YSGQTLRQNLFMADLS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 VN---------PISIV-VPEFSVA----------RTNLVVRQRLQVAAYD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 IN---------PVSLV-VPEFSIA----------RTNLVVRQRLYVA-AT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 LMWPYPIDPSKVDGII-YPVGRTY----------SNITLSYTGLFPLQGD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 IS-------SGSRGVY-YPDDIFR---------S-NVSVLVTGRFLRFNT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 QV------SSSRRGVY-YNDDIFR---------S-DVLHLTQDYFLPFHS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 HNWPEPIDMNKADGVI-YPNGRTY----------SNITLQTTNLFPRNGD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 KDWPQPINPLFADGII-YPTGRSY----------SNISLSYQGLFPRQGD
.
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus TLTWYN------S---WN----------QAYSSPVLPFGHG--VYFST--
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus NVTQFY------T---QG----------TNIDNPTLPFRDG--VYFAA--
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus NVTQFY------T---QG----------TNIDNPTLPFRDG--VYFAA--
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus TAMDFAIGVGSSKSYN------------TKWGLYFWQKNNGYRAVFRICK
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus TAMDFAIGVGSSKSYN------------TKWGLYFWQKNNGYRAVFRICK
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus NVTVYPVTPYKKD--SKA----------TMYNTTQVLVGNG--LFVHTYM
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus TANAVELAVSSGNGSVTR----------D-WSLYVHHSNNQGYMYFKICR
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus HGSAVAIGISNKDQTTTP----------DQWALFAHHSNNGGQFYLRICK
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus TAQRFELGVSNKDQLVNT----------NRWALYVYQNNNEGVLKLRICK
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 TGQDVEIGVSNFRQLNNT----------NRWALYVHQKNNDHVLHFRICK
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 RTIIYPITPPAKDS-TGG----------YIYNTTILPVASG--LFVHTWM
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 -FTKIPITPPHRS----------------IFNNTYFRVGDG--ILVNTHM
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 NFTRIPITPPGRA---------------VIFNNTYFDAEDG--FFVNTHM
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 LGTQYLYSVSHAVGHDGDPTTAYI----SNYSLLVNAFDNGFVVRIGAAA
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 TLTWYN------S---WN----------QAYSSPVLPFGHG--VYFST--
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 NLTQYFSLNIESD---KI----------VYFDNPILKFGDG--VYFAA--
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 LGTQYVYSASNEKSRTSNVAFI------SNYSYYGNPFGDGIVIRIGQNS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 LGRQYIYSVTHAGDSTLYPPQGIGKHFISNYSAETLPFGNGFVVRIGFSA
.
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus IDKSNVVRGW--------------IFGTTLDNTTQSA---------LLV-
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus TEKSNIVRGW--------------IFGSTLDSTSQSA---------IIL-
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus TEKSNIVRGW--------------IFGSTLDSTSQSA---------IIL-
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus W-DSKIEPSFQPSNQQARECLINKEFYMGFGHAKNQIFGVSWSGNRVTLH
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus W-DSKIEPSFKPSNQQARECLINKEFYMGFGHALNQIFGVSWSGNRVTLH
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus YREQDSSTY--------CQEPFGVVFGTTFEQDRIAI---------IMIV
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus W-GAVYPLNLSPNHNRG-DCLVNRKFNFRFLHGANQVLGVTWSSNYVTLY
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus WLNGG-NLDWATESSRG-LCIVNRKFRFQFSHAAGQVIGVTWSSNVVTFY
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus WLRGQYSLQWLHGARHG-QCAVDRAFNFRFVHAENQVLGVTWSSNYVTFY
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 WLAGTYTPQSRPWSRYG-QCAVDKRISFTFEHQGNQVLGVTWSSNYVTFY
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 YRQESTSRTY-------CQEPFGVAFGDTFIQDRIAI---------VIIA
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 YHRTNIATNLG-SSFYGCQEPFGAAFGNTFVNEPITL---------VMFY
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 YHTNNIATSPNKPNFYGCQEPFGVAFGNTFENEPITL---------VMVY
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 NSTGTIVISPSVQTKIKKAYP-AFILGSSLTNTSAGL--PLYANYSLTII
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 IDKSNVVRGW--------------IFGTTLDNTTQSA---------LLV-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 TEKSNVIRGW--------------VFGSTFDNTTQSA---------IIV-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 NKTGSVIVGTAQTTIKKIYPA--LMLGSSFGNFSVNNKSGAYFNHTLLIL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 NKTGSLVISPTTSKVIKKIYP-AFMLGTAVTSFAHGH-AGRYLNHTLVIL
: . : .
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus ------------NNGSAITIEVC-YFQFCDNPAFIISGGAQTN-TAIYIN
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus ------------NNSTNLIVRVC-NFELCKVPLFVVFKSNNSQLSHLFSD
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus ------------NNSTNLIVRVC-NFELCKVPLFVVFKSNNSQLSHLFSD
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus TLDKVVSFFVEGADAWDYASYRCANGYSCA--HQVVYTPVTLRITTVPEG
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus TLDKVVSFFVEGADTWDYASYRCANGYSCA--HQVVYTPVTLRITTVPQG
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus PGNLGSWPTVSKPTTIKVYIIVGSNATICAYPAFNRWGPAG---QFYADD
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus GLNNTYRFYL--HNNWERATVRCHTKQSCA--FFPVENVTTLNITTNGEG
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus G-SRSYRYYL--TNNWNRVDVKCVNYPTCI--INPVRNITTFNVTTNAQG
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus GINGSYRYYI--PNDWFRVSVKCENKYVCA--IYPVYNQTTLNITTNAKG
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 GISKSYRYFL--KNDWYRVTVKCLNKYACA--LYPVYNQTTLNITTNARG
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 PDNLGSWNQVSYRNVTTVHLVVCSNATLCINPGFNRWGPAG---NIIASN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 AGNVGSWSSLVTQQQANITIVSCDNATLCANPFFLRWGPGVIR-SFTISN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 AGNIGSWTNTVTQTSANITIVSCDNATLCSNPLYLRWGPGGLP-GYVIKD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 PDGCGTVLHAFYCILQPRTQNRCPGNGGYK--AYFVYETIHNDCVPAINK
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 ------------NNGSAITIEVC-YFQFCDNPAFIISGGAQTN-TAIYIN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 ------------NNSTHIIIRVC-YFNLCKDPMYTVSAGTQVS-SWVYQS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 PSKCGTVFQVAYCLLQPRTDSYCPGNANYV--SYALIDSPT-DCTSADES
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 PESCGTSLTVFYCILEPRNGTRCPNHQDYT--SYVIWETPHLDCGSSVNR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus LRN--CTYVDTLRDLPL-SFAEVDGGFKHLREFVFKNSDGFLHIYGAYQ-
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus SFN--CTFEYVSRAFSL-DIREQSGNFVDLREFVFRNRNGFLHIYEGYE-
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus SFN--CTFEYVSRAFSL-DIREQSGNFVDLREFVFRNRNGFLHIYEGYE-
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus IRS-YDLCTNCSGFPEH-VFAVLDGGEIPP-NFDFTN---WFYLTNASS-
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus IRS-YDLCTNCSGFPEH-VFAVLDGGEIPP-NFDFTN---WFYLTNASS-
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus AFV--NHGDSCFVNNTF-EIPLNTSRI----NLAFRFNDGNLLLYHSRW-
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus LIESYDVCADCGGFPVH-VFPVLEHGYIPN-DFSFSN---WFMLSNTST-
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus LFQSYTVCDDCNGFPQH-VFAVLDGGYIPS-EFGLDN---WYVLSNTST-
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus LIKEYSVCESCNGFPAH-VFPVLEGGKIPA-DFDFTN---WFYLSNTST-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 LIQSYSVCDSCNGFPAH-VFPVLEGGKIPA-DFDFTN---WFYLTNSST-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 ALV--DHSNSCFVNNSF-NVSISTSRI----NLAFLFKDGDLLIYHSNW-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 AFQ--CHGNYTFYDTKLVNFTVSTARY----NLAFTFADGDIFMY--YA-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 AFH--CHGDYTFYDSKIINFSVDSSRY----NFAFSFADGDIFMY--YA-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 --N------ASLNSFKT-FFDLVNCTFFDSWDITADEVKEWFGITQDTQG
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 LRN--CTYVDTLRDLPL-SFEDVDGGFKHLREFVFKNSDGFLHIYGAYQ-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 AFN--CTYDRVKKSFQL-DTSPKTGNFTDLREFVFKNRDGFFTVYQTYT-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 KRR------NGLEDIKK-YFNLVNCTYFEEFNVTADERAEWFGITQDSQG
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 --N------ATLNSFKV-SFNLRQCKFMRTYNISDDENQEWFGITQNAQG
:. :
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus --PHDLDIGAPAALPAQFLPLKPLWKLPLGLNITNYKVV----TTLKP--
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus --AISIVRGLPAGFNV----LKPLLKIPFGLNVTSFKTF----LTVYR--
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus --AISIVRGLPAGFNV----LKPLLKIPFGLNVTSFKTF----LTVYR--
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus --PVSGRVVGVQPLQ-----LLCLWPIPALLGTATDITFDRNGTSDVRCN
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus --PVSGRVVGVQPLQ-----LLCLWPIPALLGTATDITFDRNGTSDVRCN
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus --LPTSGLNLLEDTP-----LHFYMSVGVGANLPNAQFF----QSLSR--
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus --FLQGKLVSTQPLK-----LMCLWPVPSLLANDEKIFFN---ASGATCN
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus --VLDGRVLTNQPLL-----VACLWPVPSLLSNDNPIHFNMSLNTGVNCN
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus --LVAGRVVGIQPLR-----LLCLWPVPSTTANDDKIYFN---TTGANCN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 --LVAGRVVGIQPLK-----LLCLWPVPSITANDDKIYFN---TTGANCN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 --LPKGSFDFNQSFP-----LQYFMTLPVGGNLPRAQFF----QSIVRQG
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 --ALGDSLNLPTAYP-----LQPYLRIPAGFKPDVVQFF----QAITRP-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 --PLGDSQNVAKAFP-----LQPYLRIPAGFKPKRAQFF----QAIIRK-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 VHLYSSRKGDLYGGN-----MFRFATLPV---YDAIKYY----TVIPR--
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 --PYDLAIGATAALPAQFLPLKPLWKLPLGLNITNYKVV----TTLKP--
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 --PVNLLRGLPSGLSV----LKPILKLPFGINITSFRVV----MAMFS--
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 VHLYTSRKNGFNSNN-----LFLFASVPI---YDKINYY----TVIPR--
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 VHLYSSRKGDLYGGN-----MFLFDTLPV---YETLKYY----TVIPR--
: :
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus --------TNQAFQAAYIVGNLKHTTMMLSFNENG-----TMSNAID---
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus ----VAAGSISVASSAYFVGYLKPLTFMLSYDLNG-----TINNAVD---
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus ----VAAGSISVASSAYFVGYLKPLTFMLSYDLNG-----TINNAVD---
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus GFSSNATADAMRFSLNFTENGVFAKEGVITLKTVSNTFKFSCSNSSTYTS
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus GFSSNATADAMRFSLNFTENGVFAKEGVITLKTVSNTFKFSCSNSSTYTR
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus SLDGSGDGKCFSAQNNLYIAPIVQRELLVAYSDAG-----IPTKVAD---
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus GYQFDGVADAIRFSLNFSSDQVFNGVNNIVFDVEGGTFEFFCTNDTSVNP
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus GYSEVREVSHLRFALNFTNQQVLNGVHNIDLLGDTFNFTFTCTNNSDITK
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus GFVGEGVADALRFSLNFTSNQVLNGVHNIILESTSSKFTFTCRNDSESTF
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 GFVGEGVADALRFSLNFTANQILNGVHNIILEGTEAKFTFTCRNDSESTL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 GTNNGADDRCVDFNISLHIAHLVNRDLLVSYFNNG-----SVANAAD---
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 -NGESAEVACASSTVSWYVSRLYYKELLVGYDSYS-----SIVNVSF---
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 -TAEDAEFQCSRYTTSWYVSYLKYHELLVGYDANS-----IISNVST---
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 --SFRAKANRRESWAAFYVYKLHQLTYLLDFSVDG-----YIRRTID---
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 --------TNQAFQAAYIVGNLKHTTMMLSFNENG-----TMSNAID---
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 ----KTTSNYVPESAAYYVGNLKQSTFMLSFNQNG-----TIVDAVD---
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 --SIITPANQRSAWAAFYVYPLHQLSYLLNFDVNG-----YITQAAD---
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 --SLRSRLNERQAWAAFYVYSLHKLTYLLDFSVDG-----YVRRAID---
: :
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus ----CSQDPLAELKCTLKQF---DVGKGIYQTSNFRVQPTVDVARFPNIT
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus ----CSQDPLAELKCTIKNF---NVSKGIYQTSNFRVSPTREVVRFPNIT
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus ----CSQDPLAELKCTIKNF---NVSKGIYQTSNFRVSPTREVVRFPNIT
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus PY-VIPFGHIDQPYYCFTTFYINETTGTTATSFVGMLPPIVREFVITRLG
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus PY-VIPFGHIDQPYYCFTTFFTNETTGATATSFVGMLPPIVREFVITRLG
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus ----CSLNAGEELFCVTGTF---DPPTGVYPLSRYRAQLS-GSVHITQQL
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus TYRYVPFGQLTEIYRCFVET---TAENGTHTTFVGILPPVVREIVVSRLG
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus GERFVPFGFLDNVYRCFVYF---DVGNGTVNKFVGILPPVVKEIVISKFG
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus YR--VPFGETGQVYYCFIFT---EAGNQSYNTFVGILPPVLKEIVISRYG
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 FR--VPFGVTGQVYYCFVFT---ESRNQSYNTFVGILPPILKEIVISRYG
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 ----CAESASEELYCVTGSF---QPPTGVYPLSRYRAQVD-GFVRVTQRG
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 ----CSSDAESELQCLLGTF---APANGVYSLSNFRSSPT-DNVRITNSA
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 ----CSFDAESELQCLLGTF---TPANGVYSLSNFRSSPV-DTVRITNSA
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 ----CGHDDLSQLHCSYTSF---EVDTGVYSVSSYEASAT-GTFIEQPNA
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 ----CSQDPLAELKCTLKQF---DVGKGIYQTSNFRVQPTVDVARFPNIT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 ----CSQDPLAELKCTTKSF---NVSKGIYQTSNFRVSPVTEVVRFPNIT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 ----CGYNDYTQLVCSYGDF---NMKSGVYSTSYYSAKPV-GAYYEAHVY
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 ----CGYDDVAQLFCSYESF---DVDSGVYSVSSFEAQPR-GYFVEQPHS
. :
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus NVC--PFDKVFNATRFPSVYAWERTKISD-----------------CVAD
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus NRC--PFDSIFNASRFPSVYAWERTKISD-----------------CVAD
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus NRC--PFDSIFNASRFPSVYAWERTKISD-----------------CVAD
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus DVYLNGYRIFSVGEVVSVNFNISSTDHRDFWTVAFVKDAEVMLDIEDTYI
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus DVYLNGYRIFSVGEVVSVNFNISSTDHRDFWTVAFVKNAEVMLDIEDTYI
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus SHCALPYKDILDPPQ-PVV--WKRYTVAN-----------------CSFD
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus AIYINGYRLISLPVIESIVFNVTSKVGSDFWTVAFAQDVEVLLELNATNI
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus TVYINGVNMATLPPVNSVIFNVTSTVGSDFWTVGFTDLADVMIDINATRI
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus SIYLNGVKLFSLPTLESVIFNVSSNVGSDFWTIAYAQDAQVMVDLNATSI
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 SIYLNGVKLFSLPVLQSVIFNVSSKVGSDFWTVAYAQDAQVMVDLNATSI
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 DYCQPPYADLLEPPQ-PVV--WRRFMLYN-----------------CAFD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 SSCSVPYSVLSRPPL-PFV--WKRYAISN-----------------CKFD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 KACSVPYNLLETPPL-PFV--WKRHSISN-----------------CKFD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 TEC--DFSPMLKGVA-PQVYNFKRLVFSN-----------------CNYN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 NVC--PFDKVFNATRFPSVYAWERTKISD-----------------CVAD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 NLC--PFDKVFNATRFPSVYAWERTKISD-----------------CVAD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 PDC--NFTDLFRENA-PTIMQYKRQVFTR-----------------CNYN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 SEC--DFSAMFSSQP-PQVYNFSRLVFTN-----------------CNYN
.
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus YTVFYNSTSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus YTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus YTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus KQLLYCNNPVNVVKCQQLK-FVLEDGFYSYVPASEDSLPRTIVRLPRFMT
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus KQLLYCNNPVNVVKCQQLK-FVLEDGFYSYAPQSEDSLPRTIVRLPRFMT
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus FDVIVNNLPTYELKCYGVAPTRLAQMCYSGVTLDVMRINST------HFT
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus VDILYCESPINKLKCQQLT-FSLDDGFYPASSAYTEYTPRSYVALPYHAT
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus VDLLYCDTPINKLKCQQLS-FSLDDGFYTTTNVYKQAVPRTYVALPYHAT
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus TDLLYCDTPLNRLKCQQLS-YALEDGFYPTTNIYTKDIPRSYVALPYHAT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 TDLLYCDTPLNRLKCQQLS-YALEDGFYPTTNIYTRDIPRSYVALPYHAT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 FSVVIDNLPTHQLQCYGISPKRLASMCYSSVTIDVMRINAT------HLN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 FQALLSHLPTFQLRCFGISPTKLATMCFGTVTLDIMLVNVT------HYN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 FQALLSHLPSFQLRCYGISPTKLSSMCFGTVSLDVMLVNVT------HYN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 LTKLLSLFAVDEFSCNGISPDAIARGCYSTLTVDYFAYPLS------MKS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 YTVFYNSTSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 YTVFYNSTSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 LTLLLSLVQVDEFVCDKITPEALATGCYSSLTVDWFAFPYA------WKS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 LTRLLSLFQVSEFSCHQVSPSALASGCYSSLTVDYFAYPLS------MAS
. . * : : : :
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus QVAPGQTGVIADY-----------------------NYKLPDD---FIG-
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus QVAPGETGVIADY-----------------------NYRLPDD---FTG-
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus QVAPGETGVIADY-----------------------NYRLPDD---FTG-
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus HNFINVSVVVSFYFDDGKHDTPVGSDFYECATCAPKYYHVRFTDYWLDG-
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus HQHINISVVVSFYFDDGQADTPVGSDFYACATCAPKYYKMVFADVDWTGI
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus NMLGNVPDVFSMY-----------------------NYVLPTD---FYG-
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus HTEVVLGVHLSLY-----------------------TKHSATL---NGG-
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus HSAINITAEVSVN-----------------------SNDDRFL---INGL
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus HAVLNITAYIGD------------------------KKDDRIQ---INGF
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 HMVLNITAYIGD------------------------KKDDRIQ---INGF
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 NLLNRVPDSFSLY-----------------------NYAVPDN---FYG-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 NLLNDVPDDFSLY-----------------------NYQLPRN---FYG-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 NLLNDVPDDFSLY-----------------------NYQLPRN---FYG-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 YIRPGSAGNIPLY-----------------------NYKQSFA---NPT-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 QVAPGQTGVIADY-----------------------NYKLPDD---FIG-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 QVAPGQTGVIADY-----------------------NYKLPDD---FTG-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 YLAIGSADRIVRF-----------------------NYNQDYS---NPS-
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 YLRQGSTGPIAQF-----------------------NYKQDFT---NPT-
.
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus ----------CVIAWNTAKQ------DVGSYFYRSHRSSKLK-----PFE
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus ----------CVIAWNTANQ------DVGSYFYRSHRSTKLK-----PFE
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus ----------CVIAWNTANQ------DVGSYFYRSHRSTKLK-----PFE
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus ----SNHTNVCVNTASFTTRLFTDYFGT-SGAVRIEIEPGTC-----PFG
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus HGDILNVTGVCVNAASFTTKFRSSYLGADGVYVG--LEAGSC-----PFS
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus ----------CVHAYYINST-NKRYTVAYQRGYSKVITPGGR-----QPY
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus ------NDTICVNTTQFTTVLNAS---VYTG-ARGDVVNVNC-----PFT
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus ------NGTFCVNTTQFTV--ITHFTQYTG--MRVAIENLDC-----PFT
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus ------NDSFCVNTTQFTTN----FVQTDSGIIKAELKNGDC-----PFT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 ------NDSFCVNTTQFTTN----FVQTDSGIIKAELKNGDC-----PFT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 ----------CLHAFYLNST-T-----AYAVANRFPIKPGGR-----QSN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 ----------CLHSYYLPND-T-----AFSYTVASRIRYPSW-----VHS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 ----------CLHSYYLPNS-T-----TFNYIVASRSQSPSW-----VYN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 ----------CRVMASVPANVTITKPEAYGYISKCSRLTGDYQHIETPLY
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 ----------CVIAWNTAKQ------DVGSYFYRSHRSSKLK-----PFE
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 ----------CVIAWNTAKQ------DVGSYFYRSHRSSKLK-----PFE
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 ----------CRIHSKVNSSVGISYSGLYSYITNCNYGGFNKDDVVKPGG
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 ----------CRILAAVPSNVTIPLPQSYMWLTQCYTNSPSN-----SHY
*
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus RDLSSEENGVLTLST----YDFNQNVPL---------E-YQATRVV----
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus RDLSSDENGVRTLST----YDFNPYVPL---------D-YQATRVV----
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus RDLSSDENGVRTLST----YDFNPYVPL---------D-YQATRVV----
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus FD---TLNNYLAFGS----LCFSTV-P----------NGGCTMNIVTQGP
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus FD---TLNNYLTFGS----LCFSTV-P----------NGGCTMNVVSKGP
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus ND---YVRTLLNTPNE---IC------T---------R-ANCFGLV----
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus WA---SLNDYLSFGT----ICFSFE-PL---------PGGCTMSIN-VVN
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus LD---SLNNFLSFGS----ICFSTY-AV---------GGGCRMRLD-KVL
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus FD---SINNYLTFDS----ICFSIE-PI---------GGGCTMNIV-RTW
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 FD---SINNYLTFDS----ICFSIE-PI---------GGGCTMNIV-RTW
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 RD---YIATVLNAAH----YT------T---------F-SYIFGLA----
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 ITPGGRQPVGPFLDS----LQSSSK-PC---------T-GSCLGLA----
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 ISPGGRQPPSSFLNT----LPGSAK-PC---------Q-GSCLGLA----
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 INPG-EYSICRDFAP----WGFSEDGQVFKRTLTQFEGGGLLVGVGTRVP
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 RDLSSEENGVLTLST----YDFNQNVPL---------E-YQATRVV----
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 RDLSSEENGVRTLST----YDFNQYVPL---------E-YQATRVV----
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 RASQPCVTGALNSPTNGQVWSFNFGGVP-----------YRTSRLTYTDH
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 VEAG-SYTPCLGLAS----RGFNTFNSM---------HYDPATGLTATGS
:
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus -------------VLSFELLNAPATVC---------GPKLSTPLVK--NQ
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus -------------VLSFELLNAPATVC---------GPKLSTELVK--NQ
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus -------------VLSFELLNAPATVC---------GPKLSTELVK--NQ
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus YGQ----PHTFA-VLYVSYTDGDNIIGVPPSNIPAYGVADMSQVYL--DT
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus YGE----PHTFA-VLYVSYTDGDNVIGVPPYNIPPYGVSDMSIVYF--DV
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus -------------VISLNPASGSHLVC---------PTNNDTDVVE--NQ
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus LGY----YTPFA-TLYVGYTRGHGITG---VSQKVGGIFDPSFITL--DT
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus IST----PTPWR-ILNIVYTDGDRTTG---VTKASGGIFDPSELYV--GV
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus FGQ----SVPWR-TLYVSYTKGSRITG---VKTPNTGVFDPSTFVE--DV
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 FGQ----SVPWR-TLYVSYTKGSRITG---VKTPNTGVFDPSTFVE--DV
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 -------------VITLKPASGNKLVC---------PIANDTDIIT--ER
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 -------------VISLSIASANKLVC---------PVGNDTDIVP--DT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 -------------VISLSVASANKLVC---------PVGNDTDIVT--GN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 MTA----NLEMGFVISVQYGTDTNSVC------PMLDLGESSTITNRLGK
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 -------------VLSFELLNAPATVC---------GPKLSTPLVK--NQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 -------------VLSFELLNAPATVC---------GPKLSTSLVK--NQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 LKN----PLDMVYVITVKYEPGAETVC-----PKQVRPDYSTNITGLLGS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 YQYISEEALEMAFIISVQYGTDSNSVC------PLQAVHNDTKVDDKLGR
: . : .
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus CVNFNFNGLKGTGVLTD-SSKTFQSFQQFGRDASDFTDSVRDPQTLQILD
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus CVNFNFNGLKGTGVLSS-SSKRFQSFQQFGRDASDFTDSVRDPQTLEILD
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus CVNFNFNGLKGTGVLSS-SSKRFQSFQQFGRDASDFTDSVRDPQTLEILD
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus CTTYTIYGMTGRGIITR-SNNTFITG-LYYTSNAGNLLAYKNSTTGIVYN
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus CTTYTIYGMTGRGIITP-SNNTFITG-LYYTSLAGDLLAYKNSTNGIVYN
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus CVKYNFYGYSGNGVLTK-SNLTIPDNKLFVASNTGSIIAVK--AQDTVYS
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus CTEYTVYGITGKGVITS-LNKTIVAG-LYYTSTSGQLLGFKNSTTGEVFA
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus CTDYTIYGISGRGIINQ-LNTTIIAG-LYYTSPAGQLLGFKNATTGDIYG
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus CTDYTIYGMSGRGVISR-SNASYIAG-LYYTAISGQLLGFKNATTGETFV
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 CTDYTIYGMSGRGVISR-SNASYIAG-LYYTAISGQLLGFKNATTGETFV
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 CVQYSLYGYTGTGVLSKNTSLTVPNGKVFTASSTGAIIGVF--INGTMYS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 CVNYNIYGYQGTGVISR-SNYTLPSSKVFSLSSSGELTVFA--VGSSFYQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 CVNYNIYGYQGTGVITT-SNYTLPSTKVFSLSASGELTVFS--VGSSFYQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 CVDYSLYGVTGRGVFQN-CSAVGVKQQRFVYDSFDNLVGYY-SDDGNYYC
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 CVNFNFNGLKGTGVLTD-SSKTFQSFQQFGRDASDFTDSVRDPQTLQILD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 CVNFNFNGFKGTGVLTD-SSKTFQSFQQFGRDASDFTDSVRDPQTLRILD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 CISYDIYGITGTGVFQL-CNATGIPQQKFVYDKFDNIIGFH-SDDGNYYC
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 CIEYSLYGVTGRGVFQN-CTPVGLKQQRFVYDGFDNLVGYH-SDNGNYYC
* : . * * *:: . : .
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus ISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTIHADHLTHSWRVY
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus ITPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVY
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus ITPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVY
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus IYPCQLAGQVAVI--SDN------IVGMASSTPNVSLDFNVTVVADSFYY
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus VYPCQLSGQVAVI--SDN------IVGMASSTPNVSLDFNVTVVADSFYY
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus ISPCVSVPVSVGY--DPNYEQ-ALLFNGLECNQRAVAVSIPASAY-WLRT
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus VRPCDLASQVAVY--QND------IIGAMTASRNSSFGFANVSELSNFYY
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus VRPCALSSQAAVY--QNE------IIGVMTASANESFGFQNVTETPKFFY
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus VVPCDLSSQAAVI--GDK------VVGVMTSITNSSFEFVKSIETPNFYY
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 VVPCDLSSQAAVI--GDK------VVGVMTSITNSSFEFVKSIETPNFYY
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 ITPCVTVPVSVGY--HANFER-VLLFNGLSCSQRSRAVSRPASTL-WNFS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 LSPCAFAPISAAF--YKGYTT-SLLFNNLPCSNRHRAVVEPVSAY-WRRS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 LSPCAFAPISAAF--YKGYTT-SLLFNNLPCSGRSRAVVEPVSDY-WRAS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 VRPCVSVPVSVIY--DKDTNLHATLFGSVACEHVTTMMSQFSRLTQSNLR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 ISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTIHADHLTHSWRVY
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 ISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTLHADQLAPSWRVY
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 VAPCVSVPVSVIY--DDNTNQYATLFGSVACQHISTMAAQFSRETRASLV
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 VRPCVSVPVSVIY--DKATNNHATLFGSVACEHVDTMMSQFSRMTQSRLR
: ** . : .
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus TTGPHV---FQTQAGCLIGAEHVN--VSYQCDIPI----GAGICASYHTA
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus STGVNV---FQTQAGCLIGAEHVN--ASYECDIPI----GAGICASYHTA
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus STGVNV---FQTQAGCLIGAEHVN--ASYECDIPI----GAGICASYHTA
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus LSNSAE-----------------------PCDQPVLTYAGIGICADGSIT
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus LSNSAE-----------------------PCDQPVLTYAGIGICADGSIT
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus VSDNQTAGVFDTPSGCVYNVINRTDITVNACDMPI----GNSLCLINATS
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus HSNGHL-----------------------GCEEPVLIYGKMGICSDGSLT
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus HSNGNS-----------------------TCTEPVLTYGSVGVCPDGTLI
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus LTNATA-----------------------NCTSPVITYGKLGVCEDGSIA
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 LTNATA-----------------------NCTSPVITYGKLGVCEDGSIA
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 VSDESA---IDTLSGCVVNAILHNDTTVSTCSMPL----GNSLCLINDTT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 VADNNT---FDTTAGCIFNAYNLTSIVVNQCDLPI----GDSYCLQPSLI
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 VVNNST---FDTSAGCIFNAINSTSIVVNQCDLPI----GDSYCLQPSTI
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 RRDSNA--PLQTAVGCVVGLSNNSL-VVSDCRLPL----GQSLCAVPPVT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 TTGPYV---FQTQAGCLIGAEHVN--ASYQCDIPI----GAGICASYHTA
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 TTGPYV---FQTQAGCLIGAEHVN--ASYQCDIPI----GAGICASYHTA
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 SRNMQN--LLQTSVGCVMGFHETND-TVEDCNLSL----GQSLCAIPPNT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 VRNIDDAGPMQTSVGCVVGLVNTSL-IVDNCQLPL----GQSLCAVPATT
. * .: . *
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus SLLRSTGQ------KSIVAYTMSLGAENSVAYANNS-IAIPTNFSISVTT
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus STLRSVGQ------KSIVAYTMSLGAENSIAYANNS-IAIPTNFSISVTT
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus STLRSVGQ------KSIVAYTMSLGAENSIAYANNS-IAIPTNFSISVTT
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus NNTARRAA-----------------SDPISPVISGN-ISVPTNFTFSVQV
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus NNTARRAA-----------------SDPISPVISGN-ISVPTNFTFSVQV
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus TQARATSGDDTKSYLSLVNYDPTY-TSLTKVLTPVYWVSIPTNFTLAAGT
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus EVNNKDAE-----------------QQPVSPIATAN-VTVPVNFTVSVQV
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus MVQTRSGN-----------------VNPVSPIVSGN-ITIPLNFTVSVQV
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus EVKVNTHV-----------------QTPVSPISTGN-ITVPSNFTVSVQV
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 EVKVNTHV-----------------QTPVSPISTGN-ITVPSNFTVSVQV
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 VAIAHAVG---LPKLYLVNYDPLYDNNSATPITPVYWVKIPTNFTLTATD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 KGFEATLS--------LVTYNPL--ADSLTPITPVYQVSVPTNFTLVAST
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 SRQGSTLL--------LVTYDPL--SDTLTPITPVYEISVPTNFTLVAST
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 SFRRRSAS---EFQLAVLNYTSPIVVTPIN--SSGFTAAIPTNFSFSVTQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 SLLRSTGQ------KSIVAYTMSLGAENSVAYANNS-IAIPTNFSISVTT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 SLLWSTGQ------KSIVAYTMSLGAENSVAYANNS-IAIPTNFSISVTT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 NLRVGRST----FGLGSLAYNSPLRVDALN--SSEFKVSLPLNFTFGVTQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 IRAATGTT--SSLQLATINFTEPHMLTPIN--SSRFIVEIPTNFSFGVTQ
:* **:. .
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus EVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQ
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus EVMPVSMAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGVALEQ
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus EVMPVSMAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGVALEQ
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus EYIQLMLKPVTVDCSVYVCNGNPRCLQLLAQYASACRTIEQALQ-LSARL
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus EYIQLMLKPVTVDCSVYVCNGNPRCLQLLAQYASACRTIEQALQ-LSARL
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus EYIQTTSPKINIDCAKYLCGDSDKCLTVLLQYGTFCDDVNKALAEVSSVI
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus EYLQMYMQPVSVDCNTYVCSGNVHCLRLLTQYASACRNIESSLQ-LSARL
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus EYLQMYLQPVSVDCNMYVCGGNPHCLRLMSQYASACRTIEESLQ-LGARL
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus EYLQMYMRPVSVDCAMYVCNGNPHCLRLLTQYASACRTIEDALQ-LSARL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 EYLQMYMRPVSVDCAMYVCNGNPHCLRLLTQYASACRTIEDALQ-LSARL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 EFIQTNAPKVTIDCARYLCGDSSRCLNILLHYGTFCDDINKALAKVNTIL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 EYIQTYASKISIDCAKYLCGDSSQCRTVLLQYGTFCNDVNVALTRVFTLL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 EYIQTYASKISIDCAKYLCGDSSQCRTVLLQYGTFCNDVNVALTRVFTLL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 EYVETSIQKVTVDCKQYVCNGFSRCEKLLVEYGQFCSKINQALHGANLRQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 EVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 EVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 EYIETSIQKITVDCKQYVCNGFAKCEKLLEQYGQFCSKINQALHGANLRQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 EFIQTTIQKVTVDCKQYVCNGFEKCEQLLREYGQFCAKINQALHGANLRQ
* : .:** *:*.. .* :: .*. * :: :*
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus DKNTQEVFAQVKQMYKTP-TIRDFGG-FNFSQIL----PDPLKPTKRSFI
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus DKNTQEVFAQVKQMYKTP-AIKDFGG-FNFSQIL----PDPSKPTKRSFI
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus DKNTQEVFAQVKQMYKTP-AIKDFGG-FNFSQIL----PDPSKPTKRSFI
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus ESVEVNSMISISQQALDLGVIDNFNHDFNLTNVL------PASVGGRSAV
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus ESVEVNSMISISQQALDLGVIDNFNHDFNLTNVL------PANVGGRSAV
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus DSTMVSLVSELTADVVRS-ENTAFDTTYNFTSLMGCLGSSCNTRNYRSAL
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus ESLEVNSAITVSERAASLANITNFEN-YNLSVLL------P-NLNGRSAM
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus ESTEVANTISVSSQAVQLANITNFDS-YNVSVLL------P-RANGRSFI
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus ESIEVNSVISVSEDALELANISNFDH-YNMSALL------P-KKNGRSFI
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 ESIEVNSVISVSEDALELANISNFDH-YNMSALL------P-KKNGRSFI
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 DSALLSLSKELSINTRDEIQSFAFGGDYNFTGLMGCLGPNCGATTYRSAL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 DNSLVDTFSSLKSTAPVQ---LAYTGDFNFTSLVGCIGTDCDSKSHRSAL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 DNSLVDTFSSLKSTAPAQ---LAYTGDFNFTSLVGCVGTDCDSKSYRSAL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 DESVYSLYSNIKTTSTQT-LEYGLNGDFNLT-LLQVPQIGGSSSGYRSAI
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 DKNTQEVFAQVKQMYKTP-TIRDFGG-FNFSQIL----PDPLKPTKRSFI
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 DKNTQEVFAQVKQMYKTP-TIRDFGG-FNFSQIL----PDPLKPTKRSFI
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 DDFVRNLFESVKTPQTVP-LTTGFGGEFNLT-LLEPLSVSTGSSNARSAL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 DESVSNLFSNIKTQATQP-LDAGLTGDFNLT-LLQVPKVVTSQYSYRSAI
:. :. :*.: :: ** :
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus EDLLYNKVTLADAGFMKQ-YADCL---GGINARDLICAQKFNGLTVLPPL
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus EDLLFNKVTLADAGFMKQ-YGECL---GDISARDLICAQKFNGLTVLPPL
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus EDLLFNKVTLADAGFMKQ-YGECL---GDISARDLICAQKFNGLTVLPPL
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus EDLLFDKVVTSGLGTVDADYKECAS-RTANTVAEVGCVQYYNGIMVLPGV
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus EDLLFDKVVTSGLGTVDADYKECAS-RTANWVAEVGCVQYYNGIMVLPGV
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus SDLLYNKVKVADPGFMSS-YQKCIDSQWGGSVRDLICTQNFNGISVLPPI
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus EDLLFNKVVTNGLGTVDQDYKQCIKDKGVGDVADVACAQYYNGVMVLPGV
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus EDLLFDKVVTSGLGTVDQDYKQCVNEWGIGEVADLSCAQYYNGIMVLPGV
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus EDLLFNKVVTNGLGTVDQDYKKCMKDKGFGEASDIACVQYYNGIMVLPGV
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 EDLLFNKVVTNGLGTVDQDYKKCMKDKGFGEASDIACVQYYNGIMVLPGV
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 SDLLYDKVKITDPGFMQS-YQKCIDSQWGGSVRDLLCTQTYNGIAVLPPI
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 SDLLFSKVSVADPGFMQS-YQQCLDAQWGGNIRDLLCTQTFNGISVLPPI
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 SDLLFNKVSVADPGFMQS-YQKCLDSQWGGNIRDLLCTQTFNGISVLPPI
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 EDLLFDKVTIADPGYMQG-YDDCMK-QGPQSARDLICAQYVSGYKVLPPL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 EDLLYNKVTLADAGFMKQ-YADCL---GGINARDLICAQKFNGLTVLPPL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 EDLLYNKVTLADAGFMKQ-YADCL---GGINARDLICAQKFNGLTVLPPL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 EELLFDKVTIADPGYMQG-YDDCMQ-QGPASARDLICAQYVAGYKVLPPL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 EDLLFNKVTIADPGYMQG-YDECMK-QGPPSARDLICAQFVAGYKVLPPL
.:**:.** . * :. * .* :: *.* * *** :
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus LTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus LTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus LTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus VDQSLLAQYSAALTGAMVLGGITAAAA----VPFSIAVQSRLNYLALQTD
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus VDQSLLAQYSAALTGAMVLGGITAAAA----VPFSIAVQSRLNYLALQTD
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus VSPAMQSLYTSLLVGAVASAGYTFGITSVGVIPFATQLQFRLNGLGVTTQ
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus VDDTKMSLYTASLVGGMVLAGFTAGAA----IPFSLAVQARLNYVALQTD
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus VDANMMTLYTASLTGAMVFGGITASAS----IPFSLAVQSRLNYVALQTD
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus VDDSKMALYTAALTGGMLLAAFTAGAS----IPFSLAVQSRLNYVALQTD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 VDDSKMALYTAALTGGMLLAAFTAGAS----IPFSLAVQSRLNYVALQTD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 VSPAMQALYTSLLVGAVASSGYTFGITSAGVIPFATQLQFRLNGIGVTTQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 VSPSMQALYTTALVGGIAASGFTFGVSSAAVIPFATQLQFRLNGLGVTTN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 VSPSMQALYTTALVGGIAASGFTFGVSSAAVIPFATQLQFRLNGLGVTTN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 YDPNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSMFYRLNGVGITQQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 LTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 LTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 MDVNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSIFYRLNGVGITQQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 YDPNMESMYTTSLTGAILGAAWTAGASSFAAIPFAQSVFYRMNGIGITQQ
: *:: * .. .. * . :**: : *:* :.: :
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus VLYENQKQIANQFNKAITQIQESLT--------------TTATALGKLQD
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus VLYENQKQIANQFNKAISQIQESLT--------------TTSTALGKLQD
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus VLYENQKQIANQFNKAISQIQESLT--------------TTSTALGKLQD
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus VLQRNQQQLANSFNAAMGNITEAFGRVNDAIEQTSHAISTVAQALDKVQN
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus VLQRNQQQLANSFNAAMGNITDAFGRVNDAIEQTSHAVSTVAQALNKVQT
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus VLVQNQQLIANSFNNALTNIQKGFD--------------ATNLALSQMQS
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus VLQRNQQILAESFNSALSNITEAFTEVNEAIKNTADAINTVATALGKVQS
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus VLNRNQEILAQSFNSALGNITAAFSEVNHAFQETSDAINTVAQALGKVQT
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus VLQKNQQILATSFNNAMSNITVAFTEVNQAIKETSDAINTVAKALGKVQS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 VLQKNQQILATSFNNAMSNITVAFTEVNQAIKETSDAINTVAKALGKVQS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 VLVENQKLIASSFNNALVNIQKGFT--------------ETSIALSKMQD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 VLMENQQLIANAFNKALVSIQEGFT--------------ATNQALNKIQT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 VLMENQQLIANAFNKALVSIQEGFT--------------ATNQALNKIQT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 VLSENQKLIANKFNQALGAMQTGFT--------------TSNQAFSKVQD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 VLYENQKQIANQFNKAITQIQESLT--------------TTATALGKLQD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 VLYENQKQIANQFNKAITQIQESLT--------------TTSTALGKLQD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 VLSENQKIIANKFNQALGAMQTGFT--------------TTNEAFQKVQD
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 VLSENQKQIANKFNQALGAMQTGFT--------------TTNLAFAKVQE
** .**: :* ** *: : .: *: ::*
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus VVNQNAQALNTLVKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGR
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGR
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGR
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus VVNDQGMALSQLTKQLASNFQAISSSIEDLYNRLDRVEADQQVDRLITGR
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus VVNDQGMALSQLTKQLASNFQAISSSIEDLYNRLDRVEADQQVDRLITGR
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus VINQHAQQLQTLVNQLGNSFGAISSSINEIFSRLDGLEANAQVDRIINGR
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus VVNQQGEALAQLTKQLSSNFQAISSSIEDIYLRLDKLAADAQVDRLISGR
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus VVNEQGQALSQLTRQLASNFQAISNSIEDIYNRLDGLTADAQVDRLITGR
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus VVNEQGQALSQLTRQLASNFQAISSSIEDIYNRLDSLAADAQVDRLITGR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 VVNEQGQALSQLTRQLASNFQAISSSIEDIYNRLDSLAADAQVDRLITGR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 VINQHAAQLQTLVTQLGNSFGAISSSINEIFSRLEGLAANAEVDRLINGR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 VVNNNALQLQVLVQQLGNTFGAISASVNEIFSRLDLLEANAEVDRLISGR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 VVNNNALQLQVLVQQLGNTFGAISASVNEIFSRLDLLEANAEVDRLISGR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 AVNANAQALSKLASELSNTFGAISSSISDILARLDTVEQDAQIDRLINGR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 VVNQNAQALNTLVKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 VVNQNAQALNTLVKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 AVNTNAQALAKLASELSNTFGAISSSIGDIIQRLDVLEQEVQIDRLINGR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 AVNANAQALSKLASELSNTFGAISSSISDILKRLDAVEQEAQIDRLINGR
.:* :. * *. :*...* *** : :: **: : : ::**:*.**
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGRGYHLM
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGRGYHLM
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus LAALNAFVAQQLTKYTDVRASRQLAQEKINECVKSQSFRYGFCGNGTHVF
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus LAALNAFVAQQLTKYTDVRASRQLAQEKINECVKSQSFRYGFCGNGTHVF
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus TVVLNTYVTQLLLKASEVRSQAALARQKISECVKAQSLRNDFCGNGTHVF
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus LAGLNAFVTQTLTKYTEVRASRQLALQKVNECVKSQSSRYGFCGNGTHLF
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus IGALNAFVAQTLTKYTEVRASRQLAIQKINECVKSQSARFGFCGNGTHLF
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus LGALNAFVTQTLTRYTDARASRQLAIQKINECVKSQSMRYGFCGNGTHLF
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 LGALNAFVTQTLTRYTDARASRQLAIQKINECVKSQSMRYGFCGNGTHLF
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 MMVLNTYVTQLLLQASEAKAQNALAVQKISECVKAQSLRNDFCGNGTHVL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 MVVLNTYVTQLLIQASELRSQAELAKQKMSECVKSQSLRNDFCGNGTHVL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 MVVLNTYVTQLLIQASELRSQAELAKQKMSECVKAQSTRNDFCGNGTHVF
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 LTSLNAFVSQQLVRSETAARSAQLASDKVNECVKSQSKRNGFCGSGTHIV
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 LQSLQTYVTQQLIRAAEIRTSANLAATKMSECVLGQSKRVDFCGKGYHLM
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 LTTLNAFVAQQLVRSESAARSAQLAKDKVNECVKSQSTRSGFCGQGTHIV
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 LTSLNAFVAQQLVRSETAARSSQLAVDKVNECVKSQSKRNGFCGSGNHIV
*:::*:* * : . ** *:.*** .** * .*** * *:.
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus SFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHEGK---AYFPREGVFVS
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus SFPQAAPHGVVFLHVTYVPSQEKNFTTAPAICHEGK---AYFPREGVFVS
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus SFPQAAPHGVVFLHVTYVPSQEKNFTTAPAICHEGK---AYFPREGVFVS
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus SVVNAAPDGMMFFHSVLLPTAYMEVAAFSGLCVEGK-GFVLREVGNVLFE
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus SVVNAAPDGMMFFHSVLLPTAYMEVAAFSGLCVEGK-GFVLREVGNVLFE
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus SVPQLAPNGVMFIHYTYQPTAYALVQTAAGLCYNGT---GYAPLSGMFVL
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus SVVNAAPNGIMFFHTVLIPSSYTTVQAWAGVCVNGDVGLILRDVRNTLFY
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus SIANAAPNGIMLFHTVLLPSEYTTVQAWAGICIDNNVGLILRDFKTTLFF
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus SIANAAPNGVMLFHTVLIPTEFVTVEAWSGVCVDGTHGLILRDVRTTLFQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 SIANAAPNGVMLFHTVLIPTEFVTVEAWSGVCVDGTHGLILRDVRTTLFQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 SIPQLAPNGVLFIHYAYTPTDYALVQTSAGLCYNGT---GYAPLRGMFVL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 SIPQLAPNGMLFIHYSYQPTKYAQVYTTAGLCFNGT---GFVPRDGLFVR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 TIPQLAPNGMLFIHYSYQPTNYVQVYTTAGLCFNGT---GFVPRDGLFVR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 SFVANAPNGFYFFHVGYVPTNFTNVTAAYGLCNNNNPLLCIAPIDGYFIT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 SFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHEGK---AYFPREGVFVS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 SFPQSAPHGVVFLHVTYVPSQERNFTTAPAICHEGK---AYFPREGVFVS
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 SFVINAPNGLYFMHVGYHPSQHIEVVAAYGLCDAANPTNCIAPVNGYFIK
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 SFVSNAPNGLYFFHVGYVPTAHINATAAYGLCNTELPPRCIAPIDGYFVT
:. **.*. ::* *: : .:* :.
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus NGS-------SWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus NGT-------SWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDP
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus NGT-------SWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDP
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus KDG-------RYFITARRMFEPRIPQTADFVQISGCDVVYLNVTRDELPT
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus KDG-------SYLITARKMFEPRVPQTADFVQISGCDVVYLNVTRDELPT
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus PND-TN----LWHYTKMNFYNPVNITFENTQVLDSCAVNYSYVNYSVIEP
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus LDS-------KYYITTRDMYQPRTPVQSDFVRISNCSVSYVNITSEQLGD
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus SD--------KYYVTPRDMFEPRTPVQADFVRIANCSVNYLNISSSELGT
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus QGS-------TYYVTTRDMFEPRTPVAADFVRIANCSVTYVNITADSLGE
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 QGS-------TYYVTTRDMFEPRTPVAADFVRIANCSVTYVNITADSLGE
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 PNN-TN----MWHFTSMQFYNPVNISYSNTQILTSCSINYTSVNYSVLQP
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 ENNESQ----VWYFTKASFYNPVNLSYENTHLLDTCGVNYTTVNNSVLNP
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 ENNASQ----LWYFTKASFYNPVNLSYENTRLLDTCGVNYTTVNNTVLNP
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 NQTTTYSIDTEWYYTGSSFFKPEPITQVNSRYVSS-DVKFEKLENNLPPP
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 NGS-------SWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 NGS-------SWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 NQT-TRGVD-DWSYTGSSFYAPEPITTLNTRYVAP-QVTFQNISTNLPPP
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 NSSATRDADPEWYYTGSAFYNPEPITLANTRYVSK-DTKYQELNNKLPPP
: * :: * : :
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus LQPEL--DSFKQELDKYFKNHTSPDVDLGDISGINASVVDIQKEID----
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus LQPEL--DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEID----
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus LQPEL--DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEID----
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus IIPDY--VDVNGTVEDILSKLPNRTSPELDLDIFNATYLNLTSEIADLTA
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus IIPDY--VDVNGTVEDILSKLPNRTSPEFNLDIFNATYLNLTSEIADLTA
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus TPPSS--YNFTEEFNKWYKNHSSYFNNTFNPGDFNFTGVNISEQLA----
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus IIPDY--LDVNKTLNDLQQSRPNYTVPDLGLDQYNTTILNLTSEIAMLQN
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus IIPDY--IDVNKTLEELEQQRPNYTLPELDIDRFNNTYLNLSAEIAELQR
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus IIPDY--IDVNKTLEEL--GRPNFTLPDFNLDQFNNTYLNLSAEIALLNA
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 IIPDY--IDVNKTLEEL--GRPNFTLPDFNLDQFNNTYLNLSAEIALLNA
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 SAPSD--YDFQKEFDKFYKNLSTSFNNTFNPNDFNFSMVDVTAQIS----
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 IEPPN--YNFQEEFDKYFKNQSSQFNITFDSSQFNVSIVNLNEQMA----
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 IEPPN--YDFQEEFDKYFKNQSSHFNITFDSSQFNVSIVNLNEQMA----
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 LLENSTDVDFKDELEEFFKNVTSHGPNFAEISKINTTLLDLSDEMA----
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 LQPEL--DSFKQELDKYFKNHTSPDVDLGDISGINASVVDIQKEID----
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 LQPEL--DSFKQELDKYFKNHTSPDVDLGDISGINASVVDIQKEID----
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 LLGNSTGTDFKDELDEFFKNVSTSIPNFGALTQINTTLLDLSDEML----
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 LLSNQTDESFRDELEEFFKNVSSQGPNFQEISKINATLLDLSDEMK----
.. .:. .. * : ::: ::
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus RSESLKNTTLELKELIANINATLVDLEWLNRVETYIKWPWWVWLIIVLVL
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus RSESLKNTTLELKELIANINATLVDLEWLNRVETYIKWPWWVWLIIVLVL
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus ----------TLTDVVNQLNKSFIDLKQMNVYEQTIKWPWYVWLAMIAGL
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus KSDSLIESTVKLHKLIEQLNQTYVDLEWLNRLESYVKWPWWVWLAILLAL
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus KSESLQNSTIQLQELIERINSSYVDLELLKRIETYVKWPWYVWLAIILVM
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus KSESLYNTTQRLEKSIENINNSYIDLELLNRLESYVKWPWYVWLAIFLAL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 KSESLYNTTQRLEKLIENINNSYIDLELLNRLESYVKWPWYVWLAIFLAL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 ----------SLHQVVDQLNQSFIDLKKLNVYEKTIKWPWYIWLAMIAGI
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 ----------ALDSVVKSLNESFIDLKKLGVYTQQPNTPWYAWLGMIAGL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 ----------ALDSVVKSLNESFIDLKKLGVYTQTIKWPWYAWLGMIAGL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 ----------ILQEVVKQLNDSYIDLKELGNYTYYNKWPWYIWLGFIAGL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 ----------ALQQVVKALNESYIDLKELGNYTYYNKWPWYIWLGFIAGL
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 ----------VLNEVVKQLNESYIDLKELGNYTYYQKWPWYVWLGFIAGL
* . :* : :**: : : **: ** :. :
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus VGLFMAIILLCYFTSCCSCCKGMC-SCGSCC-RFDE-DDSEPVLKGVKLH
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus IAIVMATILLCCMTSCCSCLKGAC-SCGSCC-KFDE-DDSEPVLKGVKLH
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus IAIVMATILLCCMTSCCSCLKGAC-SCGSCC-KFDE-DDSEPVLKGVKLH
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus ILFTCLMLFCCCSTGCCGIFSCLASSCGACCDIRGTKLQRYEAIE--KVH
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus ILFTCLMLFCCCSTGCCGIFSCLASSCGACCDIRGTKLQRYEAFE--KVH
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus VGLVLAVIMLLCMTNCCSCFKGLC-SCRHC--SYDEIEDVYPAVRVHNKR
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus IFTSFILLYCCCSTGCCGCTSCLA----DCRGQRLQ------RYEVEKVH
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus SLFSFLMLYCCCMTGCCGCCSCLTSCCFDCRGKRLQ------QYEVEKVH
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus ILFSFLMLYCCMATGCCGCCSCLSNSCFDCGGRRLQ------RYEVEKVH
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 ILFSFLMLYCCMATGCCGCCSCLSNSCFDCGGRRLQ------RYEVEKVH
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 VGLVLAVIMLMCMTNCCSCFKGMC-DCRRCCGSYDSYDDVYPAVRVNKKR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 VGLALAVFMLCCMTNCCSGFRGIC-SCKQC--QYDDYADVYPAVRVSGKR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 VGLALAVFMLCCMTNCCSGFRGIC-SCRQC--QYDDYADVYPAVRVSGKR
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 VALLLCVFFLLCCTGCGTSCLGKM-KCRNCCDSYED-------FDVEKIH
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 VGLFMAIILLCYFTSCCSCCKGMC-SCGSCC-RFDE-DDSEPVLKGVKLH
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 VGLFMAIILLCYFTSCCSCCKGMC-SCGSCC-RFDE-DDSEPVLKGVKLH
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 LALALCVFFILCCTGCGTSCLGKL-KCNRCCDKYEEYD-----LEPHKIH
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 VALALCVFFLLCCTGCGTNCMGKF-KCNRCCDSYDDYE-----VEPHKIH
: *.* * :
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus YT
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus YT
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus YT
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus VQ
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus VQ
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus TE
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus IQ
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus IQ
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus IQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus0 IQ
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus1 TV
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus2 TV
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus3 TV
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus4 VH
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus5 YT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus6 YT
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus7 IH
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus8 VH
>16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus ---------ATGTTTATTGTATTTCTCATTAGTTACACAACTTTTCTCATTCCTTAC---------------------------------------ACAGCTACAACAACATGTTTCTCAGGGCCTACAACAGAGAATAAG---TTGAACATATCC---------------------TCAGGTAGTAGGGGTGTTTAT---TACCCTGATGACATTTTTCGT---------------------------TCC---AATGTTAGTGTGTTGGTGACAGGACGTTTCCTTCGCTTTAACACCACTCTTACGTGGTACAAT------------------TCA---------TGGAAC------------------------------CAGGCTTATTCTTCACCTGTCTTGCCTTTTGGGCATGGT------GTTTACTTTTCAACC------ATTGACAAATCTAATGTTGTCAGAGGTTGG------------------------------------------ATTTTTGGAACCACGTTAGATAACACCACTCAATCCGCA---------------------------TTGCTTGTG---------------------------------------AACAATGGTAGTGCTATTACAATAGAAGTCTGT---TACTTCCAATTTTGTGACAACCCTGCCTTTATAATTAGTGGCGGTGCACAAACAAAC---ACTGCTATCTATATCAACTTACGTAAT------TGTACATATGTGGACACACTACGTGACTTACCATTA---AGTTTTGCGGAGGTTGATGGTGGTTTTAAACACTTACGTGAGTTTGTATTCAAGAATAGTGATGGGTTTTTGCACATTTATGGTGCTTACCAG---------CCTCACGACTTAGACATAGGTGCTCCGGCTGCACTACCAGCTCAATTCCTGCCTTTAAAGCCCCTATGGAAACTGCCCCTCGGTTTAAATATTACCAATTATAAGGTTGTG------------ACAACTTTAAAACCC------------------------------ACAAATCAGGCCTTCCAAGCTGCTTATATAGTGGGTAACTTAAAACATACAACTATGATGTTGTCTTTTAATGAAAATGGC---------------ACTATGTCCAATGCTATTGAT---------------------TGCTCTCAGGACCCATTGGCTGAGCTAAAGTGCACACTCAAGCAGTTT---------GATGTAGGTAAAGGTATTTACCAAACGTCAAACTTCCGAGTTCAACCTACTGTTGATGTTGCGCGCTTTCCAAATATTACTAACGTGTGT------CCTTTTGACAAGGTTTTTAATGCTACACGCTTTCCTAGTGTCTATGCGTGGGAAAGAACAAAGATTTCTGAT---------------------------------------------------TGTGTTGCAGATTACACTGTTTTCTACAACTCAACTTCTTTTTCGACTTTCAACTGTTATGGAGTGTCTCCTTCTAAGTTGATTGATTTGTGTTTTACAAGTGTGTATGCAGATACATTTTTGATAAGATTTTCC------------------GAAGTCAGACAAGTAGCACCTGGTCAGACTGGTGTTATTGCAGACTAC---------------------------------------------------------------------AATTATAAACTACCTGACGAC---------TTTATAGGT---------------------------------TGTGTTATAGCTTGGAACACAGCCAAGCAA------------------GACGTCGGTAGCTATTTTTATAGGTCCCATCGTTCTAGCAAATTAAAA---------------CCCTTTGAAAGAGACCTTTCATCAGAAGAAAATGGTGTCCTTACACTTAGTACC------------TATGACTTTAATCAAAATGTACCTCTT---------------------------GAG---TACCAAGCCACTAGAGTCGTT---------------------------------------------------GTTCTTTCCTTTGAACTTCTTAATGCACCTGCTACAGTGTGT---------------------------GGACCAAAATTATCCACTCCATTGGTTAAG------AACCAGTGCGTCAACTTCAACTTTAATGGACTTAAAGGTACTGGTGTGTTGACTGAC---TCGTCTAAAACGTTTCAATCTTTCCAGCAGTTTGGTCGGGACGCATCTGATTTTACTGATTCTGTGCGTGACCCGCAAACTTTACAGATACTTGACATTTCACCGTGCTCTTTTGGTGGTGTAAGTGTCATAACACCAGGAACTAACACTTCATCTGCAGTGGCTGTTCTTTACCAAGATGTAAACTGCACTGATGTTCCCACAACAATACATGCAGATCACTTAACACACTCTTGGCGTGTTTATACCACTGGACCCCATGTT---------TTCCAAACACAAGCAGGGTGCCTTATAGGAGCTGAACATGTCAAC------GTATCCTATCAGTGTGACATTCCAATT------------GGTGCTGGCATTTGTGCTAGCTATCATACAGCCTCACTTTTACGGAGTACAGGTCAA------------------AAATCTATTGTGGCCTATACTATGTCATTAGGTGCTGAAAATTCTGTGGCATATGCTAATAATTCA---ATTGCCATACCTACTAATTTTTCTATTAGTGTCACTACTGAAGTGATGCCTGTTTCTATGGCTAAAACATCTGTCGATTGTACTATGTACATCTGTGGTGATTCTTTAGAGTGCAGTAACCTACTGCTTCAGTATGGTAGCTTCTGTACCCAACTCAATCGTGCCCTTTCTGGCATTGCTGTTGAACAGGACAAAAATACCCAAGAGGTGTTTGCCCAGGTTAAACAGATGTATAAAACACCA---ACCATAAGAGATTTTGGTGGT---TTTAATTTCTCTCAGATATTA------------CCAGACCCTTTGAAGCCTACTAAGCGTTCTTTTATAGAGGATTTGCTCTATAACAAAGTAACACTCGCGGATGCTGGTTTCATGAAACAG---TACGCAGACTGTTTG---------GGTGGTATTAACGCAAGAGATCTCATCTGTGCTCAAAAGTTTAATGGGCTGACAGTCTTACCACCTTTGCTCACTGATGACATGATTGCTGCCTATACTGCAGCGCTCATTAGTGGCACTGCCACTGCAGGCTGGACTTTCGGTGCAGGTGCAGCCCTTCAAATACCTTTTGCTATGCAAATGGCTTATAGGTTTAATGGCATTGGAGTTACTCAAAATGTTCTCTATGAGAACCAAAAACAAATTGCCAATCAGTTCAATAAGGCTATTACTCAAATTCAAGAATCACTCACA------------------------------------------ACTACAGCGACAGCGCTGGGCAAGCTGCAAGACGTAGTCAACCAGAATGCTCAAGCATTAAATACACTTGTCAAACAACTTAGCTCCAATTTTGGTGCTATTTCAAGTGCTTTGAATGATATCCTCTCACGACTTGACAAAGTTGAGGCAGAGGTGCAAATTGACAGGTTGATTACAGGCAGATTACAAAGCCTCCAAACCTATGTAACACAACAACTAATCAGAGCTGCTGAAATCAGGGCTTCTGCTAATCTTGCTGCTACCAAAATGTCTGAGTGTGTTCTTGGACAATCGAAAAGAGTTGATTTTTGTGGAAAAGGCTATCACCTTATGTCTTTCCCTCAATCCGCTCCACATGGTGTTGTGTTCTTACATGTCACTTATGTGCCAGCACAAGAAAAGAACTTCACTACTGCCCCAGCAATTTGTCATGAAGGCAAG---------GCGTACTTCCCTCGTGAAGGTGTGTTTGTATCTAATGGCAGT---------------------TCTTGGTTTATTACACAGAGGAATTTTTATTCGCCACAGATAATCACAACAGACAATACATTTGTAGCCGGAAGTTGTGACGTCGTCATTGGAATTATTAACAATACAGTTTATGATCCTCTGCAACCTGAGCTT------GACTCATTTAAACAAGAGCTAGACAAGTACTTCAAAAATCATACATCACCTGATGTTGATCTTGGCGACATTTCAGGCATCAATGCTTCTGTCGTCGATATTCAAAAAGAAATTGAC------------------------------------------CGCCTCAATGAGGTTGCCAAAAATTTAAATGAATCACTCATTGACCTTCAAGAACTTGGCAAATATGAGCAATATATTAAATGGCCTTGGTATGTCTGGCTTGGCTTTATAGCAGGGTTAGTAGGATTATTTATGGCCATCATTCTTCTTTGTTACTTTACTAGCTGCTGCAGCTGCTGTAAAGGCATGTGC---TCCTGTGGTTCTTGCTGC---AGATTTGATGAA---GACGACTCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTATACA >Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus ---------------ATGTTAATTTTGTTTGTTTTTCTTCCTTTTATTACTGCAGAT---------------------------------------------------ACGTGTCTCAATTTTACTAATCTTGCAGCGCCTGCTTATAACATAGCC------------------TCCTCGTCTCGACGTGGTGTGTAT---TATCCTGATGACATTTTTCGG---------------------------TCT---GACTTTTTACATTTGGTAAATGATTATTTTCTGCCATTTGGTTCCAATGTAACTCAATTTTAT------------------ACT---------CAGGGT------------------------------ACTAATATTGATAACCCCACTTTGCCATTTAGAGATGGT------GTGTATTTTGCTGCC------ACAGAGAAGTCTAATATAGTTAGAGGCTGG------------------------------------------ATTTTTGGTTCTACTTTGGACTCCACCTCCCAGTCTGCT---------------------------ATAATTTTA---------------------------------------AATAATTCTACAAATTTGATTGTGCGGGTTTGT---AATTTTGAATTATGTAAAGTGCCACTATTTGTGGTTTTTAAATCTAATAATTCCCAGTTATCACACTTGTTTAGTGATAGTTTTAAT------TGTACCTTTGAGTATGTTTCTAGGGCTTTCTCTCTT---GATATACGCGAGCAGTCAGGTAATTTTGTGGATTTAAGAGAGTTTGTTTTTCGTAATAGGAATGGCTTCCTTCATATTTATGAGGGTTATGAG---------GCTATTTCTATAGTTAGAGGATTGCCTGCCGGGTTCAACGTC------------CTCAAGCCATTATTAAAGATACCATTTGGCCTTAATGTTACGTCTTTTAAGACTTTT------------CTTACAGTTTATAGG------------------GTGGCAGCAGGTAGTATTAGTGTAGCGAGCTCTGCTTATTTTGTAGGTTATTTAAAACCATTAACTTTCATGCTTAGTTATGATTTAAATGGT---------------ACTATTAATAATGCTGTTGAT---------------------TGTTCTCAGGATCCGCTCGCTGAGTTAAAGTGTACTATTAAGAATTTT---------AATGTTTCTAAAGGCATTTATCAGACTTCAAACTTCAGAGTGTCTCCAACTCGGGAGGTTGTTAGATTTCCTAATATTACAAATCGCTGT------CCTTTTGACAGCATCTTTAATGCTTCCAGATTTCCTTCTGTGTATGCGTGGGAAAGGACTAAAATTTCTGAT---------------------------------------------------TGTGTTGCGGATTATACTGTTCTCTACAACTCAACCTCATTTTCAACTTTTAAGTGTTATGGAGTTTCTCCCTCTAAGTTGATTGATTTATGCTTTACAAGTGTGTATGCTGATACATTCTTGATAAGATTTTCT------------------GAAGTCAGGCAAGTTGCACCGGGTGAAACTGGTGTTATTGCTGACTAT---------------------------------------------------------------------AATTATAGGCTACCTGATGAC---------TTCACAGGC---------------------------------TGTGTCATAGCTTGGAATACAGCTAATCAA------------------GATGTTGGTAGTTATTTTTATAGATCTCATCGCTCCACCAAATTAAAG---------------CCATTTGAGCGTGATCTTTCTTCTGACGAGAATGGTGTTCGTACACTTAGTACA------------TATGACTTCAACCCTTATGTACCTCTT---------------------------GAT---TATCAAGCTACCAGAGTGGTA---------------------------------------------------GTGCTTTCATTTGAATTGCTGAATGCACCTGCTACAGTTTGT---------------------------GGACCTAAGTTGTCCACGGAACTAGTTAAG------AACCAATGTGTCAATTTCAATTTTAATGGACTCAAAGGTACTGGTGTCTTGAGTTCG---TCTTCAAAAAGATTCCAGTCGTTTCAGCAATTCGGTCGTGACGCTTCTGACTTTACGGATTCAGTGCGCGACCCACAGACATTAGAAATACTTGACATTACACCATGTTCTTTTGGTGGTGTGAGTGTAATAACACCTGGAACAAATGCTTCATCTGAAGTAGCTGTTCTTTATCAAGATGTAAATTGCACTGATGTCCCAACTGCCATACGTGCAGACCAATTAACACCAGCTTGGCGCGTTTACTCAACTGGAGTAAATGTA---------TTTCAAACACAAGCTGGCTGTCTTATTGGAGCTGAACATGTTAAC------GCTTCATATGAGTGTGACATTCCTATT------------GGTGCTGGCATTTGTGCTAGCTACCATACAGCTTCTACTCTACGTAGTGTAGGTCAG------------------AAATCCATTGTGGCTTACACTATGTCCTTGGGTGCAGAAAATTCTATTGCTTATGCTAATAATTCA---ATTGCCATACCTACAAATTTTTCAATCAGTGTCACAACTGAAGTGATGCCTGTTTCAATGGCTAAGACATCAGTAGATTGTACAATGTACATCTGTGGTGATTCTCAGGAGTGCAGTAACTTACTTCTCCAGTATGGAAGTTTTTGCACGCAATTAAATCGCGCTCTCACGGGCGTTGCCTTAGAACAGGACAAAAATACACAGGAGGTTTTTGCCCAGGTTAAACAAATGTACAAGACACCA---GCCATAAAGGATTTTGGCGGT---TTCAATTTTTCACAAATATTG------------CCTGATCCTTCAAAGCCAACAAAGAGATCATTTATTGAAGACCTACTCTTCAACAAGGTGACTCTTGCTGATGCTGGCTTTATGAAACAA---TATGGCGAATGCCTA---------GGCGATATTAGTGCTAGAGACCTCATTTGTGCTCAGAAGTTCAATGGACTTACTGTCCTGCCACCATTGCTCACAGATGAAATGATTGCTGCATACACTGCTGCCCTTGTCAGTGGTACTGCTACTGCTGGCTGGACATTCGGTGCTGGTGCTGCTCTTCAAATACCTTTTGCTATGCAAATGGCATATAGGTTCAATGGCATTGGAGTTACTCAAAATGTTCTCTATGAGAATCAAAAACAGATCGCCAATCAATTCAACAAGGCGATCAGTCAAATTCAAGAATCACTTACA------------------------------------------ACAACATCAACTGCATTGGGCAAGCTGCAAGACGTTGTCAACCAGAACGCTCAAGCATTGAACACACTTGTTAAACAGCTTAGCTCCAATTTTGGTGCAATTTCAAGTGTGCTAAATGACATTCTTTCACGACTAGACAAAGTTGAGGCGGAGGTGCAAATTGACAGGTTGATCACAGGCAGGTTGCAGAGCCTTCAAACCTATGTAACACAACAACTAATCAGAGCTGCTGAAATCAGAGCTTCTGCTAATCTTGCTGCTACTAAAATGTCTGAGTGTGTTCTTGGACAATCAAAAAGAGTTGACTTCTGTGGAAGAGGCTATCATCTTATGTCTTTTCCTCAGGCCGCTCCGCATGGTGTTGTTTTCTTACATGTCACATATGTGCCATCGCAGGAGAAAAACTTCACCACAGCTCCAGCAATTTGTCATGAAGGCAAA---------GCATACTTCCCGCGTGAAGGTGTTTTTGTATCTAATGGCACT---------------------TCTTGGTTCATTACACAGAGGAATTTTTACTCACCACAAATAATCACAACAGATAATACATTTGTTGCTGGAAACTGTGATGTCGTAATTGGCATCATTAACAACACAGTCTATGATCCTCTGCAACCTGAGCTT------GACTCATTTAAAGAAGAGCTGGACAAGTACTTCAAAAATCACACATCACCTGATGTTGATCTTGGCGACATTTCAGGCATTAATGCTTCCGTCGTCAATATTCAAAAAGAAATTGAC------------------------------------------CGCCTCAATGAGGTTGCCAAAAATCTAAATGAATCGCTCATTGACCTTCAAGAACTTGGTAAATATGAGCAATACATCAAATGGCCCTGGTACGTTTGGCTCGGCTTCATTGCTGGACTGATTGCTATCGTCATGGCCACTATACTGCTTTGTTGCATGACCAGCTGTTGCAGTTGCCTCAAGGGTGCATGC---TCGTGTGGTTCTTGCTGC---AAATTTGATGAG---GATGACTCTGAGCCTGTGCTCAAGGGAGTCAAATTACACTACACA >Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus ---------------ATGTTAATTTTGTTTGTTTTTCTTCCTTTTATTACTGCAGAT---------------------------------------------------ACGTGTCTCAATTTTACTAATCTTGCAGCGCCTGCTTATAACATAGCC------------------TCCTCGTCTCGACGTGGTGTGTAT---TATCCTGATGACATTTTTCGG---------------------------TCT---GACTTTTTACATTTGGTAAATGATTATTTTCTGCCATTTGGTTCCAATGTAACTCAATTTTAT------------------ACT---------CAGGGT------------------------------ACTAATATTGATAACCCCACTTTGCCATTTAGAGATGGT------GTGTATTTTGCTGCC------ACAGAGAAGTCTAATATAGTTAGAGGCTGG------------------------------------------ATTTTTGGTTCTACTTTGGACTCCACCTCCCAGTCTGCT---------------------------ATAATTTTA---------------------------------------AATAATTCTACAAATTTGATTGTGCGGGTTTGT---AATTTTGAATTATGTAAAGTGCCACTATTTGTGGTTTTTAAATCTAATAATTCCCAGTTATCACACTTGTTTAGTGATAGTTTTAAT------TGTACCTTTGAGTATGTTTCTAGGGCTTTCTCTCTT---GATATACGCGAGCAGTCAGGTAATTTTGTGGATTTAAGAGAGTTTGTTTTTCGTAATAGGAATGGCTTCCTTCATATTTATGAGGGTTATGAG---------GCTATTTCTATAGTTAGAGGATTGCCTGCCGGGTTCAACGTC------------CTCAAGCCATTATTAAAGATACCATTTGGCCTTAATGTTACGTCTTTTAAGACTTTT------------CTTACAGTTTATAGG------------------GTGGCAGCAGGTAGTATTAGTGTAGCGAGCTCTGCTTATTTTGTAGGTTATTTAAAACCATTAACTTTCATGCTTAGTTATGATTTAAATGGT---------------ACTATTAATAATGCTGTTGAT---------------------TGTTCTCAGGATCCGCTCGCTGAGTTAAAGTGTACTATTAAGAATTTT---------AATGTTTCTAAAGGCATTTATCAGACTTCAAACTTCAGAGTGTCTCCAACTCGGGAGGTTGTTAGATTTCCTAATATTACAAATCGCTGT------CCTTTTGACAGCATCTTTAATGCTTCCAGATTTCCTTCTGTGTATGCGTGGGAAAGGACTAAAATTTCTGAT---------------------------------------------------TGTGTTGCGGATTATACTGTTCTCTACAACTCAACCTCATTTTCAACTTTTAAGTGTTATGGAGTTTCTCCCTCTAAGTTGATTGATTTATGCTTTACAAGTGTGTATGCTGATACATTCTTGATAAGATTTTCT------------------GAAGTCAGGCAAGTTGCACCGGGTGAAACTGGTGTTATTGCTGACTAT---------------------------------------------------------------------AATTATAGGCTACCTGATGAC---------TTCACAGGC---------------------------------TGTGTCATAGCTTGGAATACAGCTAATCAA------------------GATGTTGGTAGTTATTTTTATAGATCTCATCGCTCCACCAAATTAAAG---------------CCATTTGAGCGTGATCTTTCTTCTGACGAGAATGGTGTTCGTACACTTAGTACA------------TATGACTTCAACCCTTATGTACCTCTT---------------------------GAT---TATCAAGCTACCAGAGTGGTA---------------------------------------------------GTGCTTTCATTTGAATTGCTGAATGCACCTGCTACAGTTTGT---------------------------GGACCTAAGTTGTCCACGGAACTAGTTAAG------AACCAATGTGTCAATTTCAATTTTAATGGACTCAAAGGTACTGGTGTCTTGAGTTCG---TCTTCAAAAAGATTCCAGTCGTTTCAGCAATTCGGTCGTGACGCTTCTGACTTTACGGATTCAGTGCGCGACCCACAGACATTAGAAATACTTGACATTACACCATGTTCTTTTGGTGGTGTGAGTGTAATAACACCTGGAACAAATGCTTCATCTGAAGTAGCTGTTCTTTATCAAGATGTAAATTGCACTGATGTCCCAACTGCCATACGTGCAGACCAATTAACACCAGCTTGGCGCGTTTACTCAACTGGAGTAAATGTA---------TTTCAAACACAAGCTGGCTGTCTTATTGGAGCTGAACATGTTAAC------GCTTCATATGAGTGTGACATTCCTATT------------GGTGCTGGCATTTGTGCTAGCTACCATACAGCTTCTACTCTACGTAGTGTAGGTCAG------------------AAATCCATTGTGGCTTACACTATGTCCTTGGGTGCAGAAAATTCTATTGCTTATGCTAATAATTCA---ATTGCCATACCTACAAATTTTTCAATCAGTGTCACAACTGAAGTGATGCCTGTTTCAATGGCTAAGACATCAGTAGATTGTACAATGTACATCTGTGGTGATTCTCAGGAGTGCAGTAACTTACTTCTCCAGTATGGAAGTTTTTGCACGCAATTAAATCGCGCTCTCACGGGCGTTGCCTTAGAACAGGACAAAAATACACAGGAGGTTTTTGCCCAGGTTAAACAAATGTACAAGACACCA---GCCATAAAGGATTTTGGCGGT---TTCAATTTTTCACAAATATTG------------CCTGATCCTTCAAAGCCAACAAAGAGATCATTTATTGAAGACCTACTCTTCAACAAGGTGACTCTTGCTGATGCTGGCTTTATGAAACAA---TATGGCGAATGCCTA---------GGCGATATTAGTGCTAGAGACCTCATTTGTGCTCAGAAGTTCAATGGACTTACTGTCCTGCCACCATTGCTCACAGATGAAATGATTGCTGCATACACTGCTGCCCTTGTCAGTGGTACTGCTACTGCTGGCTGGACATTCGGTGCTGGTGCTGCTCTTCAAATACCTTTTGCTATGCAAATGGCATATAGGTTCAATGGCATTGGAGTTACTCAAAATGTTCTCTATGAGAATCAAAAACAGATCGCCAATCAATTCAACAAGGCGATCAGTCAAATTCAAGAATCACTTACA------------------------------------------ACAACATCAACTGCATTGGGCAAGCTGCAAGACGTTGTCAACCAGAACGCTCAAGCATTGAACACACTTGTTAAACAGCTTAGCTCCAATTTTGGTGCAATTTCAAGTGTGCTAAATGACATTCTTTCACGACTAGACAAAGTTGAGGCGGAGGTGCAAATTGACAGGTTGATCACAGGCAGGTTGCAGAGCCTTCAAACCTATGTAACACAACAACTAATCAGAGCTGCTGAAATCAGAGCTTCTGCTAATCTTGCTGCTACTAAAATGTCTGAGTGTGTTCTTGGACAATCAAAAAGAGTTGACTTCTGTGGAAGAGGCTATCATCTTATGTCTTTTCCTCAGGCCGCTCCGCATGGTGTTGTTTTCTTACATGTCACATATGTGCCATCGCAGGAGAAAAACTTCACCACAGCTCCAGCAATTTGTCATGAAGGCAAA---------GCATACTTCCCGCGTGAAGGTGTTTTTGTATCTAATGGCACT---------------------TCTTGGTTCATTACACAGAGGAATTTTTACTCACCACAAATAATCACAACAGATAATACATTTGTTGCTGGAAACTGTGATGTCGTAATTGGCATCATTAACAACACAGTCTATGATCCTCTGCAACCTGAGCTT------GACTCATTTAAAGAAGAGCTGGACAAGTACTTCAAAAATCACACATCACCTGATGTTGATCTTGGCGACATTTCAGGCATTAATGCTTCCGTCGTCAATATTCAAAAAGAAATTGAC------------------------------------------CGCCTCAATGAGGTTGCCAAAAATCTAAATGAATCGCTCATTGACCTTCAAGAACTTGGTAAATATGAGCAATACATCAAATGGCCCTGGTACGTTTGGCTCGGCTTCATTGCTGGACTGATTGCTATCGTCATGGCCACTATACTGCTTTGTTGCATGACCAGCTGTTGCAGTTGCCTCAAGGGTGCATGC---TCGTGTGGTTCTTGCTGC---AAATTTGATGAG---GATGACTCTGAGCCTGTGCTCAAGGGAGTCAAATTACACTACACA >Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus ATGCTACGCAACAAGAAGTTTTTGTCCCTGTTTGTGTTTAGCGTGGTTTTACCATGTGCCTAT---------------------------------TCGAATACCGGCACATGTTCTAATACCATTAATAGGTTTATGTAT---CTTAAGCTCGGCTTGCCTGAGAGTGTTAATGATGCATATGTATCTGGCTATTTACCAGTACGCGATAATTGGACATGTTCT------------------GCCGGTTTT---TGGCAATATTATAATGCCCATGCCATATTTATGTCGTATTATTCTACTGCCATGGACTTCGCTATTGGTGTTGGTTCTTCAAAAAGTTATAAC------------------------------------ACAAAGTGGGGGTTGTATTTTTGGCAAAAGAATAATGGGTATCGTGCTGTTTTTAGAATTTGTAAGTGG---GATTCTAAAATTGAACCCTCGTTCCAACCTTCTAATCAGCAGGCCAGAGAATGCCTTATTAATAAGGAATTCTATATGGGCTTTGGGCATGCTAAAAACCAGATTTTTGGTGTTTCATGGTCCGGTAACAGGGTTACACTTCATACATTGGATAAGGTTGTTAGTTTCTTCGTCGAAGGTGCAGACGCGTGGGATTACGCTTCCTACAGGTGTGCTAATGGTTATTCATGCGCA------CACCAAGTTGTTTATACACCTGTGACGCTTAGAATTACAACAGTTCCAGAGGGTATACGTTCG---TATGACTTGTGCACCAATTGCTCTGGCTTTCCGGAGCAC---GTATTTGCAGTGCTAGATGGTGGTGAAATTCCTCCA---AACTTTGATTTTACGAAC---------TGGTTTTACCTCACCAATGCGTCATCT---------CCTGTATCAGGTCGCGTTGTTGGTGTTCAGCCGTTGCAG---------------TTACTTTGCCTTTGGCCTATCCCTGCTTTGCTTGGTACTGCCACGGATATTACTTTTGACAGAAATGGTACTAGCGATGTGCGCTGCAATGGGTTCTCATCCAATGCAACGGCGGATGCTATGAGATTTTCGCTTAATTTCACTGAGAATGGTGTTTTTGCGAAGGAAGGTGTTATAACACTTAAAACTGTTTCTAACACATTTAAATTCTCATGTAGCAACTCATCTACATACACTAGTCCATAT---GTCATACCTTTTGGTCACATTGACCAACCTTACTATTGCTTCACCACATTTTATATTAATGAGACAACAGGCACTACTGCGACTAGTTTTGTGGGTATGTTGCCACCTATAGTTAGAGAATTCGTCATCACCCGCCTTGGTGATGTTTATCTCAATGGTTATAGGATTTTCTCCGTTGGTGAAGTTGTTAGTGTAAATTTTAACATTAGTTCCACCGATCACCGTGATTTTTGGACGGTGGCATTTGTTAAGGATGCTGAAGTCATGTTGGACATTGAGGATACGTACATTAAACAACTTCTCTACTGTAACAACCCTGTTAATGTTGTTAAGTGTCAGCAGTTGAAG---TTTGTGCTTGAGGATGGCTTTTACTCTTACGTGCCTGCGTCAGAAGATAGTCTGCCTCGTACTATTGTGCGTTTGCCCCGTTTCATGACACATAATTTTATTAACGTCAGTGTTGTCGTTTCATTTTATTTTGATGATGGCAAACACGACACGCCTGTGGGTAGTGACTTTTATGAGTGTGCCACCTGTGCTCCTAAATACTACCATGTTCGGTTCACGGACTACTGGTTAGACGGT---------------AGTAACCATACTAACGTTTGTGTTAACACCGCTAGCTTCACTACTAGGCTTTTTACTGATTATTTCGGTACT---AGTGGTGCTGTTCGTATAGAAATTGAGCCAGGAACTTGC---------------CCTTTTGGCTTTGAC---------ACGCTCAATAATTATCTGGCCTTTGGCTCG------------TTATGTTTTTCTACAGTC---CCT------------------------------AATGGTGGCTGTACTATGAACATAGTTACACAAGGACCTTATGGCCAG------------CCACACACATTTGCT---GTTTTGTATGTGTCGTACACTGATGGTGACAACATCATAGGTGTGCCACCTTCTAACATCCCAGCATATGGTGTTGCCGACATGAGTCAAGTCTATTTG------GACACTTGTACCACGTACACTATTTATGGTATGACTGGCAGGGGTATTATTACTAGA---AGTAACAACACCTTTATAACTGGT---CTTTACTACACGTCCAATGCTGGCAATTTGTTGGCTTACAAAAATTCTACCACAGGTATTGTTTATAATATTTACCCATGTCAACTCGCAGGCCAAGTTGCTGTTATT------AGTGACAAC------------------ATTGTTGGTATGGCTTCCTCCACGCCCAATGTGTCGCTAGACTTTAATGTTACAGTCGTCGCAGATAGCTTCTACTACTTAAGTAATAGCGCTGAG---------------------------------------------------------------------CCATGTGACCAACCCGTGCTTACTTATGCTGGTATAGGCATTTGCGCTGACGGTAGCATTACTAATAACACAGCAAGACGTGCGGCT---------------------------------------------------TCAGATCCTATTAGTCCTGTAATTTCTGGTAAT---ATCTCTGTACCTACCAATTTCACATTTTCTGTGCAAGTTGAGTACATTCAGTTGATGCTTAAACCAGTAACCGTTGATTGTAGTGTCTATGTTTGTAATGGAAATCCACGCTGTTTGCAATTACTAGCACAGTATGCTAGTGCTTGCCGAACAATAGAACAAGCTTTGCAA---TTGAGTGCTAGGCTTGAATCTGTTGAGGTTAACAGTATGATCTCCATCTCACAACAGGCGCTCGATCTTGGTGTTATTGACAACTTTAACCATGATTTTAACCTGACTAACGTACTG------------------CCTGCAAGTGTTGGTGGTCGTTCAGCTGTTGAAGACTTGTTGTTTGATAAAGTTGTCACTTCAGGACTTGGTACTGTTGATGCTGACTATAAGGAGTGTGCCTCA---CGCACTGCTAATACTGTTGCTGAAGTTGGCTGTGTGCAGTACTATAATGGTATTATGGTGCTGCCAGGTGTAGTAGACCAGTCTCTGCTCGCCCAATATTCAGCTGCTTTAACAGGTGCTATGGTTTTGGGTGGTATAACTGCGGCTGCAGCT------------GTGCCATTCTCCATTGCGGTTCAGTCTCGTCTGAACTATCTTGCATTGCAGACTGATGTGTTGCAGCGTAACCAGCAGCAGTTGGCTAATTCCTTTAATGCAGCCATGGGTAATATTACAGAAGCTTTTGGGCGTGTTAATGACGCCATTGAGCAAACGTCACATGCTATTTCTACTGTTGCACAGGCATTGGACAAGGTGCAGAATGTAGTCAACGACCAAGGCATGGCTCTCTCTCAACTTACTAAACAGTTGGCTTCTAACTTTCAGGCTATCTCGTCTTCTATTGAGGACTTGTATAATAGACTTGATAGAGTTGAAGCAGACCAGCAGGTTGACAGACTTATCACAGGCCGTTTGGCAGCACTTAATGCCTTTGTTGCACAGCAGTTGACTAAGTACACGGATGTTCGCGCTTCTAGACAGTTAGCACAGGAGAAGATTAACGAGTGTGTTAAGTCGCAGTCCTTTAGATATGGTTTCTGTGGCAATGGAACACATGTCTTTTCAGTTGTCAATGCGGCACCTGATGGTATGATGTTCTTTCACTCAGTTTTGCTTCCCACTGCCTACATGGAGGTTGCAGCTTTTTCTGGACTTTGTGTTGAGGGTAAA---GGGTTTGTCTTGCGGGAAGTTGGTAATGTTCTATTTGAAAAGGATGGA---------------------CGCTACTTTATAACTGCTCGTAGGATGTTTGAACCACGTATCCCTCAGACTGCTGACTTTGTGCAAATCTCTGGCTGTGACGTTGTTTATCTTAATGTGACTCGGGACGAATTGCCCACTATTATACCAGATTAT------GTTGATGTGAATGGCACAGTCGAAGACATTCTCAGTAAGCTCCCTAACAGGACGTCTCCTGAGTTAGATCTCGACATCTTTAATGCCACATATCTTAATCTGACTAGTGAAATTGCAGATCTTACTGCACGTTCCGAGTCACTTAAAAATACTACTTTGGAATTGAAAGAGCTTATTGCTAATATTAATGCTACACTTGTTGACTTGGAATGGCTTAACAGAGTGGAGACTTATATCAAGTGGCCATGGTGGGTTTGGCTCATCATTGTGCTTGTCTTGATACTCTTCACATGTCTAATGCTATTCTGCTGTTGTTCAACTGGTTGTTGTGGCATTTTTAGCTGTTTGGCTAGTTCTTGCGGTGCTTGTTGTGATATTCGTGGAACTAAACTTCAGCGGTACGAAGCAATTGAA------AAGGTCCACGTACAA >Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus ATGCTACGCAACAAGAAGTTCTTGTCCCTGTTTGTGTTTAGCGTTGTGCTACCATGTGCCTAT---------------------------------TCAAACACCGGCACATGTTCCAGTACTATTAATAGATTTATGTAT---CTTAAGCTCGGCCTGCCTGAGAGTGTTAATGATGCATACGTATCTGGCTATTTACCAGTACGTGACAATTGGACATGTTCT------------------GCCGGTTTT---TGGCAATATTATAATGCCCATGCCATATTTATGTCTTATTATTCTACTGCCATGGACTTCGCTATTGGTGTTGGTTCTTCAAAAAGTTATAAC------------------------------------ACAAAGTGGGGCTTGTATTTTTGGCAAAAGAATAATGGATATCGCGCTGTTTTTAGAATTTGTAAGTGG---GATTCTAAAATTGAACCCTCTTTCAAACCTTCTAATCAGCAGGCCAGAGAATGCCTTATTAATAAGGAATTCTACATGGGCTTTGGGCATGCTCTAAACCAGATTTTTGGTGTTTCATGGTCTGGTAACAGGGTTACACTTCATACATTGGATAAGGTTGTTAGTTTCTTCGTCGAAGGTGCAGACACGTGGGATTATGCTTCCTACAGGTGTGCTAATGGTTATTCATGTGCA------CATCAAGTTGTTTACACACCTGTGACGCTGAGAATTACAACAGTCCCACAGGGTATACGTTCG---TATGACTTGTGCACCAATTGCTCTGGTTTTCCGGAGCAC---GTATTTGCAGTGCTAGATGGTGGTGAAATTCCTCCA---AACTTTGATTTTACGAAC---------TGGTTTTACCTCACCAATGCGTCATCT---------CCTGTATCAGGTCGCGTTGTTGGTGTTCAGCCGTTGCAG---------------TTGCTTTGCCTTTGGCCTATACCGGCTTTGCTTGGTACTGCTACGGATATTACTTTTGACAGAAATGGTACTAGTGATGTGCGATGCAATGGGTTTTCATCCAATGCAACGGCGGATGCTATGAGATTTTCGCTTAATTTCACTGAGAATGGTGTTTTTGCGAAGGAAGGTGTTATAACACTTAAAACTGTTTCTAACACATTTAAATTCTCATGTAGCAACTCATCTACATATACTAGGCCATAT---GTCATACCTTTTGGTCATATAGATCAACCATATTATTGCTTCACCACATTCTTTACTAATGAGACTACTGGCGCCACTGCTACTAGTTTCGTTGGTATGCTACCGCCTATAGTCAGAGAGTTTGTCATCACACGTCTTGGTGATGTTTATCTTAATGGCTACAGGATATTTTCAGTTGGTGAAGTTGTTAGTGTTAATTTTAATATCAGCTCCACTGACCATCGTGATTTTTGGACCGTGGCTTTTGTCAAAAATGCTGAGGTTATGCTTGATATCGAGGATACATATATCAAACAGCTTCTCTACTGTAACAACCCAGTTAATGTTGTTAAGTGTCAGCAGTTGAAG---TTTGTGCTTGAAGATGGGTTTTACTCGTATGCACCTCAGTCAGAAGACAGTTTGCCACGTACTATAGTCCGATTGCCACGTTTTATGACGCATCAGCATATTAATATTAGTGTTGTTGTGTCGTTTTATTTCGACGATGGTCAGGCTGACACACCTGTTGGTAGTGATTTCTATGCTTGTGCAACGTGTGCACCCAAGTATTACAAAATGGTCTTTGCAGATGTTGATTGGACTGGTATTCACGGTGACATTTTGAATGTTACCGGTGTCTGTGTCAATGCTGCAAGTTTTACGACCAAGTTTCGTAGTAGTTATTTGGGTGCTGATGGTGTTTATGTAGGG------CTCGAAGCTGGAAGTTGT---------------CCATTCAGCTTCGAT---------ACGCTCAACAATTATCTAACATTTGGTTCA------------CTCTGTTTTTCAACAGTT---CCA------------------------------AATGGTGGTTGCACTATGAATGTTGTTTCCAAAGGGCCATATGGTGAA------------CCACACACATTTGCT---GTTCTTTATGTGTCTTACACCGATGGCGATAATGTCATAGGTGTACCACCTTATAACATACCCCCATATGGTGTTTCTGACATGAGTATAGTCTATTTT------GATGTGTGTACTACTTACACTATTTATGGTATGACTGGTAGGGGTATTATAACACCT---AGTAATAACACTTTTATTACGGGT---TTATATTATACATCTCTTGCCGGTGACCTTTTGGCTTACAAAAATTCTACCAATGGTATTGTTTATAATGTTTACCCATGTCAACTTTCTGGTCAAGTTGCTGTTATT------AGTGACAAC------------------ATTGTTGGTATGGCGTCGTCCACACCCAATGTTTCACTAGATTTTAATGTTACAGTCGTCGCAGATAGCTTCTACTACTTAAGTAATAGCGCTGAG---------------------------------------------------------------------CCATGTGACCAACCCGTGCTCACTTATGCTGGTATAGGCATTTGCGCTGACGGTAGCATTACTAATAATACAGCAAGACGTGCTGCT---------------------------------------------------TCAGATCCTATTAGTCCTGTAATTTCTGGTAAC---ATCTCTGTGCCTACCAATTTCACATTTTCTGTGCAAGTTGAGTATATTCAGTTGATGCTTAAACCAGTAACCGTTGATTGTAGTGTCTATGTTTGTAATGGAAATCCACGCTGTTTGCAATTACTAGCACAGTATGCTAGTGCTTGCCGAACAATAGAACAAGCTTTGCAA---TTGAGTGCTAGGCTTGAATCTGTTGAGGTTAACAGTATGATCTCCATTTCACAACAGGCGCTCGATCTCGGTGTTATTGACAACTTCAACCATGACTTCAATTTGACTAATGTACTG------------------CCTGCTAATGTGGGTGGTCGTTCAGCTGTTGAAGACTTGTTGTTTGACAAAGTTGTCACTTCAGGACTTGGTACTGTTGATGCTGATTATAAGGAGTGTGCTTCA---CGCACGGCCAACTGGGTTGCTGAAGTTGGCTGTGTGCAGTACTATAATGGTATTATGGTGCTGCCAGGTGTAGTAGACCAGTCTCTGCTTGCTCAATACTCAGCTGCTTTAACAGGTGCTATGGTTTTGGGTGGTATAACTGCGGCTGCCGCT------------GTACCATTCTCCATTGCGGTTCAGTCTCGTCTGAACTATCTTGCATTGCAGACTGATGTGTTGCAGCGTAACCAGCAGCAGTTGGCTAACTCCTTTAATGCAGCCATGGGTAATATCACTGATGCTTTTGGTCGTGTTAACGACGCAATAGAGCAGACGTCACATGCTGTTTCTACAGTTGCACAGGCCTTGAACAAAGTGCAAACTGTTGTTAATGACCAGGGTATGGCTCTCTCTCAACTTACTAAGCAGCTAGCTTCTAACTTTCAGGCTATTTCGTCTTCTATTGAGGATTTGTATAATAGGCTTGACAGAGTTGAAGCTGACCAACAGGTTGACAGACTTATCACTGGCCGTTTAGCAGCATTAAATGCTTTTGTGGCACAGCAGCTGACTAAATATACTGATGTGCGCGCTTCTAGACAGTTGGCTCAGGAAAAGATAAATGAGTGTGTTAAATCACAGTCCTTTAGATATGGTTTCTGTGGTAATGGAACACATGTGTTCTCAGTTGTCAATGCGGCACCTGATGGTATGATGTTCTTTCACTCAGTTTTGCTTCCCACTGCTTACATGGAGGTTGCAGCATTCTCTGGACTTTGTGTGGAGGGCAAA---GGCTTTGTCTTGCGCGAAGTTGGTAATGTCCTATTTGAGAAGGATGGT---------------------AGCTACCTTATAACTGCTCGCAAGATGTTTGAGCCACGTGTGCCTCAGACTGCTGACTTTGTGCAAATCTCTGGCTGTGACGTCGTTTATCTTAATGTGACTCGGGACGAATTGCCCACTATTATACCAGATTAC------GTTGATGTGAATGGCACAGTTGAAGACATACTCAGTAAACTCCCTAACAGGACATCACCTGAGTTCAATCTCGACATCTTTAATGCCACATATCTGAATCTGACTAGTGAAATCGCAGATCTTACTGCACGTTCCGAGTCACTTAAAAATACTACTTTGGAATTGAAAGAGCTTATTGCTAATATTAATGCCACGCTTGTTGACTTGGAATGGCTTAATAGAGTGGAGACTTATATCAAGTGGCCATGGTGGGTGTGGCTCATCATTGTGCTTGTCTTGATACTCTTCACATGTCTAATGCTATTCTGTTGTTGTTCAACTGGTTGTTGTGGCATTTTTAGCTGTTTGGCTAGTTCTTGCGGTGCTTGTTGTGATATTCGTGGAACTAAACTTCAGCGGTACGAAGCATTTGAA------AAGGTCCACGTACAA >BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus ------------ATGTGGGCGATATTGTTAATATTGCCAGCAGTACTTGCA------------------CGTCCTAGTTGTATT---AAGTCT---AGTGTCTCTTTATCTTCTATTGAACACAATGTGACTTATCAGTCT---TTTGTTCTCAGT---------------------------AAAGTATCTTGTCTT---TTACCAGACCCTTTTATAGCT------------------------------TATTCTGGACAAACATTGAAGCAGAGCATTTATTATGCTGACACCACTAATGTGACTGTATATCCAGTCACGCCATATAAGAAAGAT------AGTAAAGCC------------------------------ACCATGTACAACACCACTCAGGTGTTAGTAGGCAATGGC------TTATTCGTTCACACATATATGTATAGAGAACAAGATTCTAGTACATAT------------------------TGTCAAGAACCATTTGGTGTAGTCTTCGGTACTACTTTTGAACAAGATCGTATTGCCATA---------------------------ATTATGATTGTTCCTGGCAACTTAGGATCTTGGCCTACTGTTAGTAAACCTACAACCATTAAGGTTTATATTATAGTGGGTAGCAATGCTACAATATGTGCATATCCAGCTTTTAATAGATGGGGTCCAGCTGGT---------CAATTTTATGCAGATGATGCATTTGTT------AACCACGGTGACTCCTGTTTTGTTAATAACACCTTT---GAAATCCCTCTTAATACATCTCGTATT------------AACTTGGCTTTCAGGTTTAATGACGGTAATTTACTTCTTTATCACTCTAGATGG---------CTTCCGACATCTGGCCTCAATCTTCTTGAAGACACTCCA---------------TTACATTTCTATATGAGTGTAGGTGTAGGTGCTAACCTACCTAACGCTCAATTCTTC------------CAGTCTTTAAGTAGA------TCGCTAGATGGTAGTGGTGATGGCAAATGTTTTTCTGCCCAGAATAACTTATATATAGCACCAATTGTTCAACGTGAGCTACTAGTAGCTTACAGTGATGCTGGT---------------ATACCTACTAAAGTTGCAGAT---------------------TGTTCACTAAATGCTGGTGAAGAACTCTTTTGTGTAACAGGCACGTTT---------GACCCACCTACTGGTGTTTATCCACTCAGTAGGTATCGTGCTCAATTGAGT---GGTTCAGTCCACATTACACAGCAGTTGTCTCATTGTGCATTGCCCTATAAGGACATTCTAGACCCACCACAA---CCTGTGGTC------TGGAAACGCTATACGGTTGCTAAT---------------------------------------------------TGTTCATTTGATTTTGATGTCATTGTGAACAATTTACCTACATATGAACTCAAATGTTATGGTGTCGCACCTACACGTTTAGCTCAGATGTGCTATTCAGGTGTGACTTTGGATGTGATGCGTATTAACAGCACG------------------CATTTTACAAATATGTTGGGTAATGTGCCTGATGTTTTTAGTATGTAT---------------------------------------------------------------------AATTATGTATTGCCCACAGAC---------TTTTATGGT---------------------------------TGTGTGCATGCATATTATATTAATAGTACT---AATAAGCGTTACACTGTTGCCTACCAACGTGGTTATTCTAAAGTAATCACACCAGGAGGTAGA---------------CAACCGTATAATGAC---------TATGTACGCACACTTCTTAACACTCCTAATGAA---------ATCTGC------------------ACA---------------------------AGA---GCTAATTGTTTTGGCTTAGTA---------------------------------------------------GTTATCAGTCTTAATCCAGCATCAGGTAGTCACTTGGTGTGT---------------------------CCTACTAATAATGACACAGATGTTGTAGAA------AATCAGTGTGTAAAGTATAACTTTTATGGTTATTCTGGTAATGGTGTTTTGACTAAG---TCTAATCTTACTATACCAGATAATAAATTGTTTGTTGCTAGTAATACAGGTAGTATTATAGCAGTTAAA------GCACAGGATACTGTTTACAGTATTTCACCATGTGTGTCTGTGCCTGTGTCAGTGGGATAT------GATCCTAATTATGAACAA---GCTCTATTGTTTAATGGACTTGAATGCAATCAACGTGCTGTGGCAGTTAGCATACCTGCTTCTGCTTAT---TGGCTTCGCACTGTTTCTGACAATCAAACTGCTGGTGTGTTTGACACACCATCTGGTTGTGTTTATAATGTTATTAATAGAACTGATATCACAGTTAATGCCTGTGATATGCCTATT------------GGTAACAGTTTATGTTTAATCAACGCTACGAGCACGCAAGCTCGCGCTACGAGCGGTGATGACACTAAGTCGTATTTAAGTTTGGTTAACTACGACCCTACTTAC---ACATCACTGACTAAAGTGCTCACACCTGTTTATTGGGTTAGCATACCAACTAACTTTACACTAGCTGCAGGTACTGAATATATTCAGACAACCTCACCAAAGATTAATATTGACTGTGCTAAATACCTTTGTGGTGATTCTGACAAGTGTCTCACAGTTCTATTGCAATATGGAACTTTTTGTGATGACGTAAATAAAGCATTAGCTGAGGTTAGCTCAGTTATTGATTCCACTATGGTTTCGCTAGTCTCTGAATTGACAGCTGATGTTGTGCGTAGT---GAAAACACTGCGTTTGACACTACTTATAATTTCACCTCTTTGATGGGCTGTCTTGGTTCATCTTGCAATACAAGAAATTACCGATCTGCACTTTCTGATCTTTTATATAATAAAGTCAAAGTTGCAGACCCTGGTTTTATGAGTTCG---TACCAAAAGTGTATAGACTCTCAGTGGGGTGGTAGTGTACGTGATTTGATTTGTACACAAAATTTTAATGGCATTTCTGTCTTACCACCAATTGTTTCACCAGCTATGCAGTCACTTTACACATCACTGCTTGTGGGTGCTGTCGCATCTGCTGGATACACGTTTGGTATTACATCCGTAGGTGTTATACCATTTGCAACTCAGCTTCAATTCAGGTTGAATGGTTTAGGTGTTACTACTCAAGTTTTGGTTCAAAACCAACAACTTATAGCTAACTCTTTCAATAATGCTCTGACTAATATCCAGAAAGGATTCGAT------------------------------------------GCTACTAATTTAGCCTTGAGTCAGATGCAATCCGTTATCAACCAACATGCACAGCAATTACAAACTTTGGTGAATCAGCTAGGTAATTCTTTTGGTGCTATTTCTTCATCCATTAATGAAATTTTCAGCCGCTTGGATGGTCTTGAAGCCAATGCTCAGGTAGATAGAATTATAAATGGACGCACTGTTGTGCTTAACACGTATGTTACACAACTATTATTGAAAGCATCAGAAGTGCGTTCTCAAGCTGCTTTAGCTCGTCAGAAAATAAGTGAGTGTGTTAAGGCGCAATCTCTGCGCAATGATTTTTGTGGTAATGGCACACATGTGTTCTCTGTACCACAATTGGCTCCTAATGGTGTAATGTTTATACATTACACATATCAACCTACTGCTTATGCACTTGTGCAAACAGCTGCTGGGCTTTGTTATAATGGCACT---------GGTTATGCACCACTGAGTGGCATGTTTGTGCTACCCAATGAC---ACTAAC------------CTCTGGCATTATACTAAAATGAATTTTTACAATCCTGTAAATATAACATTCGAAAACACACAAGTGCTTGACTCTTGTGCAGTGAATTACTCTTATGTGAACTACTCGGTTATTGAACCTACACCACCTAGTAGT------TACAACTTTACAGAAGAATTTAATAAATGGTACAAAAACCACAGTTCTTATTTCAATAATACTTTTAACCCAGGGGATTTTAATTTCACTGGTGTTAATATTTCAGAACAATTAGCT------------------------------------------ACACTCACAGATGTTGTTAATCAGCTAAATAAGTCTTTTATCGACCTTAAGCAGATGAATGTTTACGAGCAGACTATAAAATGGCCTTGGTATGTATGGCTTGCCATGATAGCAGGGTTAGTAGGTTTAGTTTTAGCAGTTATTATGCTACTTTGCATGACAAACTGCTGTTCTTGCTTCAAAGGACTTTGT---TCTTGTAGACATTGT------TCCTATGATGAAATTGAAGATGTATATCCAGCTGTTCGTGTGCATAATAAACGAACAGAA >BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus ---ATGATACTTTCTCTTCTTCTTCTTGTTATTGCTGTGTGTGTTAATAATAACTATGCTTGGCTTGGTTTGCAGCGCAATGCTATTCCTCCTTCTAACCAGGATGGTGAGTGTGGTGGTGATCCTGGTAAGCTGCCTAAT---CTTAATCTAGGTTTGCCACCAAAT---AAGACAGTTTTTGTTAGTGGTTATTTACCACTACACAAAGGTTGGGTTTGTCCCACACATCCACTTGGAGGTGGAGGTTATGGTACTACTTTTAATGACATTCATGCCATTTATTGGTCCTATCATTCTACTGCAAATGCTGTTGAACTAGCTGTTTCGTCTGGTAATGGTTCTGTGACCAGA------------------------------GAT---TGGTCACTTTATGTTCACCACAGTAATAATCAGGGTTATATGTATTTTAAGATCTGTAGGTGG---GGTGCCGTTTACCCATTGAACTTATCACCAAACCACAATAGAGGT---GATTGTTTGGTTAATAGAAAGTTCAACTTTAGGTTCTTACATGGCGCTAATCAAGTCTTAGGTGTTACATGGTCTTCTAACTATGTAACGTTGTATGGCTTAAATAATACTTACAGGTTTTACTTA------CACAACAATTGGGAACGTGCTACTGTACGTTGCCATACAAAACAGTCATGTGCA------TTTTTCCCTGTGGAAAATGTGACTACTTTAAACATCACTACTAATGGTGAAGGTTTGATAGAGTCATATGATGTTTGTGCAGACTGTGGTGGCTTCCCAGTTCAT---GTCTTTCCAGTTTTAGAACACGGCTATATCCCTAAT---GATTTTAGTTTCTCTAAT---------TGGTTTATGCTGTCTAATACTTCTACC---------TTTTTGCAAGGTAAATTAGTTAGCACACAACCATTGAAG---------------CTAATGTGCTTGTGGCCTGTGCCATCGTTGCTTGCTAACGATGAAAAAATATTCTTCAAT---------GCATCCGGCGCCACTTGTAATGGATATCAGTTTGATGGTGTCGCTGACGCTATTAGGTTTTCTTTGAATTTTAGTAGTGACCAGGTTTTTAATGGGGTTAACAATATCGTTTTTGATGTTGAAGGTGGTACATTCGAGTTCTTTTGCACTAATGATACGAGTGTTAACCCTACTTATAGGTATGTCCCTTTTGGACAACTTACAGAGATTTACAGATGTTTCGTTGAAACC---------ACAGCTGAAAATGGTACACACACCACGTTTGTTGGTATTTTACCACCAGTTGTACGTGAGATTGTTGTATCCAGATTAGGTGCTATATATATTAACGGTTATCGCCTAATCTCTCTACCAGTTATTGAAAGCATTGTTTTCAATGTCACTAGCAAAGTGGGTTCTGATTTTTGGACCGTTGCTTTTGCACAAGATGTAGAAGTGCTGCTCGAACTTAATGCTACAAATATTGTTGACATACTTTACTGTGAAAGTCCCATTAACAAGTTAAAGTGTCAACAGTTGACT---TTTTCACTAGATGATGGTTTTTATCCTGCCAGCAGTGCATACACAGAGTATACACCAAGATCATATGTCGCTCTACCGTATCATGCCACCCACACTGAAGTAGTTCTTGGTGTACACCTCTCATTGTAC---------------------------------------------------------------------ACCAAACATAGTGCTACCCTT---------AATGGTGGT---------------------AATGACACAATTTGTGTGAACACAACCCAGTTCACCACAGTACTTAATGCTTCA---------GTTTATACCGGT---GCCAGAGGTGATGTCGTTAATGTCAATTGC---------------CCATTTACGTGGGCT---------TCGCTCAATGACTATCTTAGCTTTGGTACC------------ATTTGTTTTTCATTTGAA---CCACTA---------------------------CCTGGTGGTTGTACTATGAGCATTAAT---GTAGTGAATCTTGGTTAT------------TACACACCTTTCGCC---ACATTGTATGTGGGCTATACTAGAGGACATGGTATAACGGGT---------GTGTCACAGAAGGTTGGTGGTATTTTTGACCCTAGTTTTATTACGTTA------GACACTTGTACTGAGTACACTGTCTACGGAATAACTGGCAAAGGTGTTATTACTAGC---CTCAACAAGACCATTGTTGCTGGT---TTGTATTATACATCTACGTCAGGTCAACTTTTGGGGTTCAAGAATTCCACCACAGGTGAGGTCTTTGCTGTCAGACCTTGTGATTTAGCCAGTCAGGTTGCCGTCTAC------CAGAATGAC------------------ATTATTGGTGCCATGACAGCTAGTCGTAATAGTAGTTTTGGCTTTGCTAATGTTAGTGAGCTTTCTAACTTCTATTACCACTCTAATGGGCACTTA---------------------------------------------------------------------GGTTGTGAAGAACCAGTACTTATTTATGGTAAGATGGGCATTTGTTCTGATGGCTCACTCACTGAAGTCAACAACAAAGATGCTGAA---------------------------------------------------CAGCAACCTGTGTCACCAATTGCTACCGCTAAT---GTGACTGTCCCAGTCAATTTTACAGTCTCTGTTCAGGTTGAGTATTTACAGATGTACATGCAACCAGTCAGTGTTGATTGCAACACGTATGTCTGCAGTGGTAATGTGCACTGTTTACGTTTGCTCACCCAGTATGCTTCGGCTTGCAGAAACATTGAGTCTTCTTTACAG---CTTAGTGCACGTCTTGAATCGCTAGAAGTGAATAGTGCAATTACAGTGTCAGAACGTGCAGCATCACTTGCTAACATCACTAACTTTGAGAAT---TACAACCTTTCAGTACTACTA------------------CCT---AATCTTAACGGCCGTAGTGCTATGGAAGATTTATTATTCAACAAAGTGGTCACCAACGGTCTGGGCACAGTCGACCAAGACTACAAACAGTGCATAAAAGATAAAGGCGTTGGTGATGTTGCTGATGTGGCTTGTGCGCAGTACTATAATGGTGTAATGGTGCTGCCTGGTGTTGTCGATGACACTAAAATGAGTTTGTATACTGCTTCTTTAGTTGGTGGTATGGTGTTAGCCGGTTTTACAGCCGGTGCAGCC------------ATACCATTCTCTTTAGCAGTCCAAGCTCGATTAAATTACGTTGCATTACAAACAGACGTGCTGCAGCGAAACCAACAGATTTTGGCTGAATCCTTTAATAGTGCTTTGAGCAATATTACGGAAGCTTTCACTGAGGTTAACGAGGCTATTAAAAATACAGCTGATGCCATTAATACTGTTGCCACTGCACTCGGTAAGGTACAGAGTGTGGTGAATCAACAAGGTGAGGCTTTAGCACAGTTGACAAAACAACTTTCGTCTAATTTTCAAGCTATATCGTCGTCAATAGAGGACATATATCTAAGGTTGGACAAACTCGCAGCTGATGCTCAAGTTGATCGTCTGATTTCTGGCAGACTTGCTGGCTTAAATGCCTTCGTTACGCAGACTCTGACTAAGTACACAGAAGTACGCGCTTCCAGACAGCTTGCACTACAGAAAGTTAACGAGTGTGTTAAATCACAATCTAGCCGTTACGGCTTTTGTGGTAATGGTACACACTTGTTCTCAGTTGTTAATGCTGCTCCCAATGGCATTATGTTTTTCCACACAGTTTTGATCCCTAGTAGTTATACAACAGTACAGGCTTGGGCCGGTGTTTGTGTAAATGGTGATGTAGGACTGATACTTCGTGATGTCCGTAACACACTATTTTATTTAGATAGC---------------------AAGTACTATATCACTACACGTGATATGTACCAACCAAGAACACCGGTCCAGTCTGACTTTGTACGCATTTCAAATTGTAGCGTTTCTTATGTTAACATTACTAGTGAACAGCTGGGTGATATAATTCCAGATTAT------TTAGATGTAAATAAGACTCTTAACGACCTTCAACAGTCTAGACCCAATTACACAGTGCCTGATCTGGGATTGGACCAGTATAATACAACAATCTTAAACCTCACTTCAGAAATTGCCATGTTACAAAATAAATCAGATAGTCTCATAGAATCCACTGTGAAACTCCACAAATTGATTGAACAACTCAACCAGACTTATGTGGACTTAGAGTGGCTTAACAGACTGGAATCTTATGTCAAATGGCCTTGGTGGGTGTGGCTAGCCATCCTACTGGCTTTGATATTTACTAGTTTCATCCTACTCTACTGTTGTTGCAGTACAGGGTGTTGTGGATGTACTAGTTGTCTTGCT------------GATTGTCGTGGTCAACGTTTACAA------------------CGTTACGAAGTTGAGAAAGTGCACATTCAG >BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus ------------ATGCTTTTTCTCGCAGTGTATGCGGCAGAATTGCTTGTGCTTATTACACAAATTCCTGCTGTTTTTAGTTATGGT---------GGTGAAAGGTTTACTTGCTCGCCTAATTATGCCAGTTTGCCAAAT---TTGAACCTAGGTTTGCCCCCTAAT---TCCACAGTTTTGGTTAGTGGTTATTTGCCTAGACCTGGTGACTGGGTATGT------------------TACACTGGTACA---ACAACGCATGATAATATACGTGGTGTGTTTTGGTCATATTATAGTCATGGTTCGGCAGTTGCCATAGGGATATCTAATAAAGATCAGACTACTACACCA------------------------------GATCAATGGGCACTATTTGCGCATCATAGTAATAATGGTGGACAGTTTTACTTACGTATATGTAAGTGGTTGAATGGCGGA---AACTTGGATTGGGCAACGGAGAGTAGTCGAGGA---CTCTGTATTGTTAATCGAAAGTTCCGCTTTCAATTCTCACATGCTGCTGGACAGGTAATTGGTGTTACCTGGTCCTCTAATGTTGTCACTTTTTATGGT---AGTAGGTCTTATCGTTATTACTTG------ACTAATAACTGGAACAGAGTAGATGTTAAGTGTGTAAATTATCCCACATGTATT------ATCAACCCTGTTCGTAATATTACTACTTTTAATGTAACAACGAATGCCCAAGGTTTATTTCAATCGTATACGGTGTGTGATGACTGTAATGGCTTCCCACAACAT---GTGTTTGCTGTCTTAGACGGTGGTTACATACCTAGT---GAGTTTGGTTTGGACAAC---------TGGTATGTTCTTTCTAATACGTCTACA---------GTGCTGGACGGACGCGTGTTGACTAATCAGCCTCTATTA---------------GTGGCATGCCTGTGGCCAGTGCCATCGCTGCTTTCAAATGATAACCCTATCCATTTTAATATGTCACTTAATACAGGTGTTAATTGCAATGGTTATAGTGAGGTGCGTGAGGTGTCACACTTACGCTTTGCCCTCAACTTTACCAACCAACAAGTGCTTAATGGTGTCCATAACATAGATCTGTTAGGGGACACATTTAACTTCACCTTCACATGTACTAATAACAGTGACATCACTAAGGGCGAGCGTTTTGTGCCATTTGGTTTCTTAGACAATGTCTATCGTTGCTTCGTTTATTTT---------GACGTGGGCAACGGTACTGTGAACAAGTTTGTTGGCATCTTACCACCCGTTGTGAAGGAGATTGTCATTTCTAAGTTTGGCACTGTTTACATTAATGGAGTCAATATGGCCACATTACCACCTGTTAACAGTGTAATTTTTAATGTTACTAGCACAGTGGGTTCAGATTTTTGGACTGTAGGTTTCACGGACCTGGCTGATGTCATGATAGATATTAATGCAACTAGAATTGTTGACTTACTCTACTGTGACACACCTATTAATAAACTTAAGTGCCAGCAGTTATCA---TTCTCGTTGGATGATGGCTTTTATACCACCACTAATGTATACAAGCAAGCGGTCCCACGCACATATGTCGCATTACCATATCATGCAACTCACAGTGCTATTAATATTACTGCAGAAGTAAGTGTTAAT---------------------------------------------------------------------AGCAATGATGACCGGTTTTTG---------ATTAATGGTCTT------------------AATGGTACTTTCTGTGTTAATACTACACAGTTTACTGTT------ATTACCCATTTTACGCAATATACTGGT------ATGCGTGTTGCTATTGAAAACTTAGACTGC---------------CCTTTTACGCTTGAT---------TCTCTGAATAACTTCCTGTCCTTTGGCTCT------------ATCTGCTTCTCTACTTAC---GCAGTG---------------------------GGTGGTGGTTGTAGGATGCGCTTGGAC---AAGGTGCTCATTTCCACA------------CCAACACCCTGGCGA---ATTCTGAACATTGTGTATACAGATGGAGACCGTACTACAGGT---------GTTACTAAGGCTAGTGGTGGCATTTTTGACCCTAGTGAACTATATGTT------GGTGTTTGCACTGACTACACCATTTATGGTATCTCTGGTCGTGGTATTATAAACCAG---CTTAATACAACTATTATTGCTGGT---CTGTACTACACGTCACCAGCTGGTCAGTTGTTAGGTTTCAAAAACGCCACTACAGGTGATATATATGGTGTTAGACCATGTGCACTATCGAGTCAGGCTGCTGTGTAT------CAAAATGAG------------------ATTATTGGTGTGATGACAGCTTCTGCAAATGAGAGCTTTGGCTTCCAGAATGTCACTGAGACCCCAAAGTTCTTTTATCACTCCAATGGTAATTCA---------------------------------------------------------------------ACTTGTACAGAACCAGTACTCACATATGGTAGTGTTGGTGTTTGTCCTGATGGAACCCTCATCATGGTACAAACACGCTCAGGTAAT---------------------------------------------------GTTAATCCTGTGTCACCTATCGTTAGTGGCAAT---ATTACTATCCCACTGAATTTTACTGTTTCTGTACAGGTTGAATATTTGCAGATGTACTTACAGCCCGTTTCAGTGGACTGTAATATGTATGTTTGTGGTGGCAACCCCCATTGTCTCAGACTTATGTCACAGTATGCTTCCGCTTGTCGCACCATAGAGGAGTCTCTGCAG---CTGGGTGCCCGCTTGGAGTCGACAGAAGTGGCTAACACTATTTCCGTTTCCTCACAAGCTGTGCAGCTTGCTAATATAACTAATTTTGACTCA---TATAATGTTTCTGTTCTACTT------------------CCT---AGAGCTAATGGTAGAAGCTTTATTGAAGACCTGCTATTTGACAAGGTTGTCACTAGTGGCCTGGGTACAGTAGACCAGGATTATAAACAGTGTGTCAATGAATGGGGTATTGGCGAAGTTGCTGATCTTTCATGTGCACAATATTACAATGGTATAATGGTACTCCCTGGTGTCGTTGATGCCAATATGATGACGCTCTACACGGCTTCCTTGACTGGTGCTATGGTTTTTGGTGGTATTACTGCTAGTGCTTCA------------ATACCATTCTCACTTGCAGTACAGTCACGTTTAAACTACGTGGCACTGCAAACTGATGTGCTTAACCGTAACCAGGAAATATTGGCACAGTCCTTTAATAGTGCTTTAGGCAACATAACTGCTGCTTTTTCTGAGGTGAACCATGCTTTTCAGGAAACATCAGATGCAATTAATACTGTTGCACAAGCACTTGGTAAAGTTCAGACTGTTGTCAATGAGCAAGGGCAGGCGCTTTCACAGCTTACTCGGCAATTAGCTTCTAATTTCCAAGCTATTTCAAATTCCATAGAGGATATTTATAATAGATTGGACGGGCTGACTGCTGATGCTCAGGTTGATAGGCTTATTACAGGTAGAATTGGTGCTCTTAATGCATTTGTGGCACAGACTCTCACTAAGTATACTGAGGTTCGTGCGTCGCGACAGCTGGCAATTCAGAAGATTAATGAGTGCGTTAAGTCACAGTCAGCTAGGTTTGGCTTCTGCGGTAATGGCACTCACTTGTTTTCAATTGCTAATGCTGCACCAAATGGCATCATGTTGTTCCATACAGTGTTATTACCTAGTGAATATACCACTGTGCAGGCGTGGGCTGGTATTTGCATTGATAACAATGTGGGCCTGATTCTTAGGGACTTTAAGACCACACTGTTCTTCAGTGAC------------------------AAGTACTATGTAACCCCGCGCGATATGTTTGAGCCGCGCACACCTGTTCAAGCTGATTTTGTACGCATAGCTAATTGTAGTGTCAATTACTTAAACATTAGTTCATCTGAGTTGGGTACTATTATACCTGATTAC------ATTGATGTCAACAAGACGCTTGAAGAGCTGGAACAGCAACGACCTAATTACACGTTGCCAGAGCTTGACATAGATCGTTTTAACAACACTTATCTCAACCTGTCAGCAGAGATTGCAGAGCTTCAACGTAAGTCTGAGAGTTTACAGAACTCTACAATCCAGCTGCAAGAGCTTATAGAGCGAATTAATAGTTCCTATGTGGACCTTGAGCTGCTCAAGCGTATCGAGACATATGTTAAATGGCCTTGGTACGTTTGGTTAGCTATTATTCTTGTTATGTCTCTCTTTAGCTTTTTGATGCTATACTGCTGTTGCATGACTGGTTGCTGTGGTTGCTGTAGCTGCTTAACTAGCTGTTGCTTTGATTGTCGTGGTAAACGTTTACAA------------------CAATACGAAGTGGAAAAAGTTCACATCCAG >BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus ------------ATGCTTTCTCTTGCAGTTTACTTTGCAGAGTTGCTAGTAATTATATCTTATTTACCAGATTTGGTTACA---------------GGTGATCTTAATGGCTGTGCTGATGGTCATAATAGGTTACCGAAC---CTAAATCTAGGTTTGCCACCAAAT---AGTACGGTATTTGTTAGTGGTTACCTACCCCGTAAAAATGGGTGGGAGTGCCCAACCATTAACAACCAATATGGTGGTTCA---ACCAACTATGAGAATGTCCATGGTATTTTCTGGTCTTATCATTCTACAGCTCAAAGATTTGAGTTAGGTGTGTCCAACAAGGACCAGTTGGTGAATACA------------------------------AACAGATGGGCACTCTACGTTTACCAAAACAACAATGAAGGTGTGCTAAAATTACGCATCTGTAAGTGGTTGCGTGGTCAGTACAGCTTACAGTGGTTACATGGTGCTAGACATGGG---CAGTGTGCAGTAGATAGAGCGTTTAATTTTAGGTTTGTACACGCTGAAAATCAGGTACTAGGTGTCACTTGGTCCTCTAATTATGTCACTTTTTATGGTATTAATGGTAGTTACCGTTATTACATA------CCTAATGACTGGTTTAGGGTGTCCGTTAAATGTGAAAATAAGTATGTCTGTGCT------ATATACCCTGTGTATAACCAGACTACCCTCAATATCACAACAAATGCTAAGGGCTTGATTAAGGAATATAGCGTGTGCGAGTCTTGCAATGGTTTCCCTGCTCAT---GTCTTCCCAGTTTTGGAAGGTGGTAAAATACCAGCT---GACTTTGATTTTACTAAC---------TGGTTTTACTTGTCAAACACCTCAACA---------CTTGTTGCTGGTCGTGTTGTCGGCATTCAACCACTTAGA---------------CTACTCTGTTTATGGCCAGTACCATCTACTACGGCTAATGATGACAAGATTTACTTTAAT---------ACAACAGGTGCTAATTGTAATGGATTTGTTGGTGAAGGCGTTGCAGATGCATTGCGTTTTTCTCTGAACTTCACATCAAACCAGGTCCTTAATGGTGTCCATAACATCATTTTGGAAAGCACCTCTTCAAAGTTTACTTTCACGTGCCGTAATGATTCTGAATCCACCTTTTACAGA------GTTCCTTTTGGTGAAACGGGACAAGTCTATTATTGTTTCATTTTCACA---------GAGGCAGGCAATCAGAGCTATAACACATTTGTAGGTATTTTACCACCTGTGCTAAAAGAAATCGTTATTTCTCGCTATGGGTCCATTTATCTAAATGGTGTCAAATTGTTTAGCTTGCCTACTCTTGAAAGTGTCATTTTTAACGTCTCTAGTAATGTTGGCTCTGATTTCTGGACCATAGCCTATGCACAAGATGCTCAGGTTATGGTGGATCTCAATGCAACTAGCATCACTGATTTGTTGTACTGTGATACACCTTTAAATAGACTTAAGTGCCAGCAGCTCAGC---TATGCCCTAGAAGACGGTTTTTATCCTACTACCAACATATATACTAAGGATATTCCTAGGTCGTATGTTGCCTTACCTTATCACGCCACACATGCTGTTCTTAATATAACAGCATATATTGGTGAC------------------------------------------------------------------------AAGAAGGATGACCGCATTCAA---------ATCAATGGTTTT------------------AATGACTCTTTTTGTGTGAACACAACACAGTTCACTACAAAT------------TTTGTCCAAACAGATTCTGGCATTATTAAAGCTGAGTTGAAAAATGGTGATTGC---------------CCTTTCACCTTTGAC---------TCAATTAATAATTATTTAACATTTGACTCC------------ATCTGCTTCTCAATTGAG---CCTATT---------------------------GGCGGTGGTTGCACAATGAACATAGTC---CGCACATGGTTTGGCCAA------------TCTGTACCGTGGAGG---ACTCTTTACGTGTCTTACACTAAAGGCTCCAGAATCACAGGT---------GTCAAAACCCCAAACACTGGCGTGTTTGACCCTAGCACTTTTGTAGAG------GATGTTTGCACTGACTACACTATCTATGGTATGTCCGGTAGAGGTGTAATTAGTCGT---TCTAATGCTTCATACATTGCTGGT---CTCTATTACACAGCCATTTCGGGACAACTTTTGGGCTTCAAAAATGCAACCACAGGTGAGACATTTGTTGTGGTGCCTTGTGACTTATCTAGCCAGGCTGCAGTCATT------GGTGACAAA------------------GTTGTTGGTGTTATGACCTCTATTACAAACTCTTCTTTTGAGTTTGTTAAGTCTATTGAAACACCTAACTTTTATTACTTGACCAATGCTACAGCT---------------------------------------------------------------------AATTGCACATCGCCCGTTATCACTTATGGTAAGTTGGGTGTTTGTGAGGATGGTTCCATTGCTGAAGTCAAGGTTAATACCCATGTG---------------------------------------------------CAAACACCGGTCTCACCTATTTCAACAGGCAAT---ATTACAGTGCCCTCCAACTTCACAGTTTCTGTGCAGGTCGAATACTTGCAAATGTACATGAGACCGGTCAGTGTAGACTGTGCTATGTATGTTTGTAATGGCAATCCACATTGTCTACGACTGCTGACACAGTATGCTTCCGCATGCAGAACAATTGAAGACGCACTACAA---TTGAGTGCTCGTTTGGAGTCTATTGAGGTCAATAGTGTCATCTCTGTATCCGAAGATGCGCTTGAACTGGCCAACATTAGTAACTTTGACCAT---TACAACATGTCTGCACTGCTG------------------CCA---AAGAAAAATGGGCGCAGTTTCATTGAAGACCTGTTGTTTAACAAAGTTGTTACTAATGGTCTTGGCACAGTTGACCAAGATTATAAAAAGTGCATGAAAGATAAAGGCTTCGGTGAGGCCTCTGACATTGCGTGTGTACAGTATTACAACGGCATTATGGTTCTGCCTGGTGTGGTTGATGACAGCAAAATGGCTTTGTACACTGCTGCTTTGACTGGTGGCATGCTTTTGGCCGCTTTCACTGCTGGAGCTTCT------------ATACCATTTTCCTTGGCTGTCCAATCTAGACTTAATTATGTAGCCTTGCAAACTGATGTTTTACAGAAGAATCAACAAATTCTGGCAACATCCTTTAACAATGCTATGAGCAACATTACTGTCGCTTTTACTGAAGTCAACCAGGCTATTAAAGAAACATCTGATGCCATTAATACTGTTGCTAAGGCCCTTGGCAAAGTTCAATCCGTTGTGAATGAGCAAGGTCAAGCATTGTCGCAGCTTACACGTCAACTTGCTTCTAATTTTCAGGCTATATCCTCCTCTATAGAGGATATATATAATAGGTTGGATAGCTTAGCTGCCGATGCCCAAGTAGACAGACTGATTACCGGCAGATTAGGTGCCCTTAATGCATTTGTCACACAAACTCTAACTCGCTATACCGACGCACGTGCTTCTCGTCAATTGGCTATTCAGAAGATCAATGAGTGTGTGAAATCTCAATCCATGCGTTATGGGTTTTGTGGTAATGGTACACATTTGTTTTCCATTGCTAATGCTGCACCTAATGGTGTTATGCTGTTCCACACAGTTTTGATCCCTACTGAATTTGTCACTGTTGAGGCTTGGTCTGGAGTCTGTGTCGATGGTACACATGGTCTCATTTTGCGTGATGTTCGCACTACACTGTTTCAACAAGGTAGT---------------------ACTTATTACGTGACTACACGAGACATGTTTGAACCACGAACACCTGTTGCTGCTGACTTTGTCCGTATTGCTAATTGTAGTGTGACATACGTCAATATTACTGCTGATTCTCTTGGTGAGATCATTCCAGATTAC------ATTGACGTGAATAAAACTCTTGAAGAGTTG------GGCAGGCCTAACTTCACACTGCCAGATTTCAACTTGGATCAGTTCAATAACACATATCTCAACCTTAGTGCTGAGATAGCTCTGTTGAACGCCAAGTCTGAAAGTCTGTACAACACTACTCAGAGACTTGAGAAATCGATTGAAAACATTAACAATTCTTACATAGACTTGGAGCTGCTTAATAGGCTTGAATCCTATGTGAAGTGGCCGTGGTATGTCTGGTTGGCAATCTTCCTGGCTTTGATACTGTTTTCATTTCTCATGCTTTATTGTTGTATGGCTACTGGTTGTTGTGGCTGCTGTAGCTGTCTTTCTAATTCATGCTTTGACTGTGGAGGACGACGTTTACAA------------------CGTTACGAAGTAGAAAAAGTCCACATTCAA >BtCoV_Rh_YN2012_Rs4259_S_QBP43279_1_2013_04_17_China_Unknown_Bat_coronavirus ------------ATGCTTTCCTTGGCTATTTACATCGCCGAAATTTTAGCATTCTTACAA---CTGCCTGATTTAACTACAGGGGCTCCA------AATAAGGATGGCGACTGCGGTGATGGCTATAATAGGTTACCTAAT---TTAAATTTAGGTTTACCTCCTAAT---TCTACTGTTTTTGTTAGTGGCTATTTACCTCAGAAAACAGGCTGGGTTTGTCCA------GAAAACAAAGAAGCTGGTGCT---ACCTCTTACGAAGGCGTGCATGGTGTGTTTTGGTCGTATTATGCAACTGGTCAGGATGTTGAAATAGGTGTGTCTAATTTTAGACAGCTTAACAACACC------------------------------AACAGATGGGCTTTGTATGTGCACCAGAAGAACAATGACCATGTTTTACACTTTCGTATTTGTAAGTGGCTAGCTGGTACTTATACCCCTCAGAGTAGGCCATGGTCACGCTATGGC---CAATGTGCTGTTGACAAGCGTATTAGTTTTACATTTGAGCACCAGGGTAATCAAGTGCTTGGCGTTACTTGGTCTTCTAATTATGTCACTTTTTATGGTATTAGTAAATCATACCGTTATTTTCTA------AAAAATGATTGGTATCGTGTTACTGTAAAGTGTTTGAACAAGTATGCTTGTGCC------TTGTACCCTGTGTATAACCAAACAACCCTCAACATCACAACTAATGCACGTGGGTTGATTCAATCCTACAGTGTGTGTGATAGTTGTAATGGGTTTCCTGCGCAT---GTTTTCCCTGTGCTAGAGGGAGGTAAAATACCTGCA---GATTTTGATTTTACAAAT---------TGGTTTTATTTAACCAACTCCTCTACG---------CTGGTTGCAGGGCGTGTCGTCGGTATACAGCCACTCAAG---------------CTACTTTGTTTATGGCCTGTGCCATCAATTACGGCTAATGATGATAAGATATACTTTAAC---------ACTACGGGTGCCAACTGTAATGGTTTTGTTGGTGAAGGTGTTGCTGATGCTTTACGCTTTTCCCTCAACTTCACTGCAAACCAAATCCTTAATGGTGTCCATAACATCATTTTGGAAGGTACAGAGGCCAAGTTCACTTTTACATGCCGTAATGATTCTGAGTCCACGCTCTTTAGA------GTCCCTTTTGGTGTTACTGGACAGGTGTATTACTGTTTTGTTTTCACT---------GAGTCTCGTAATCAAAGCTATAATACGTTTGTGGGTATTTTGCCTCCCATACTTAAAGAAATTGTCATCTCCAGGTACGGGTCCATTTATTTAAATGGTGTCAAACTATTTAGCTTGCCGGTTTTACAGAGTGTTATTTTTAATGTTTCTAGTAAGGTTGGTTCTGATTTTTGGACTGTAGCCTATGCACAAGATGCTCAGGTTATGGTGGATCTCAATGCAACCAGCATTACTGATTTGTTATATTGTGACACACCTTTAAATAGACTCAAATGCCAACAGCTCAGC---TATGCTCTTGAGGACGGTTTTTATCCTACTACCAATATATATACTAGGGATATCCCAAGATCCTATGTTGCTCTGCCTTACCATGCCACACACATGGTGCTCAACATAACTGCATATATTGGTGAC------------------------------------------------------------------------AAGAAGGATGACCGCATTCAA---------ATCAATGGTTTT------------------AATGACTCTTTTTGTGTGAACACAACACAGTTCACTACAAAT------------TTTGTCCAAACAGATTCTGGCATTATTAAAGCTGAGTTGAAAAATGGTGATTGC---------------CCTTTCACCTTTGAC---------TCAATTAATAATTATTTAACATTTGACTCC------------ATCTGCTTCTCAATTGAG---CCTATT---------------------------GGCGGTGGTTGCACAATGAACATAGTC---CGCACATGGTTTGGCCAA------------TCTGTACCGTGGAGG---ACTCTTTACGTGTCTTACACTAAAGGCTCCAGAATCACAGGT---------GTCAAAACCCCAAACACTGGCGTGTTTGACCCTAGCACTTTTGTAGAG------GATGTTTGCACTGATTACACTATCTATGGTATGTCCGGTAGAGGTGTAATTAGTCGT---TCTAATGCTTCATACATTGCTGGT---CTCTATTACACAGCCATTTCAGGACAACTTTTGGGTTTCAAAAATGCAACCACAGGTGAGACATTTGTTGTGGTGCCTTGCGACTTATCTAGCCAGGCTGCAGTCATT------GGTGACAAA------------------GTTGTTGGTGTTATGACCTCTATTACAAACTCTTCTTTTGAGTTTGTTAAGTCTATTGAAACACCTAACTTTTATTACTTGACCAATGCTACAGCT---------------------------------------------------------------------AATTGCACATCGCCCGTTATCACTTATGGTAAGTTGGGTGTTTGTGAGGATGGTTCCATTGCTGAAGTCAAGGTTAATACCCATGTG---------------------------------------------------CAAACACCGGTCTCACCTATTTCAACAGGCAAT---ATTACAGTGCCCTCCAACTTCACAGTTTCTGTGCAGGTCGAATACTTGCAAATGTACATGAGACCGGTCAGTGTAGACTGTGCTATGTATGTTTGTAATGGCAATCCACATTGTCTACGACTGCTGACACAGTATGCTTCCGCATGCAGAACAATTGAAGACGCACTACAA---TTGAGTGCTCGTTTGGAGTCTATTGAGGTCAATAGTGTCATCTCTGTATCCGAAGATGCGCTTGAACTGGCCAACATTAGTAACTTTGACCAT---TACAACATGTCTGCACTGCTG------------------CCA---AAGAAAAATGGGCGCAGTTTCATTGAAGACCTGTTGTTTAACAAAGTTGTTACTAATGGTCTTGGCACAGTTGACCAAGATTATAAAAAGTGCATGAAAGATAAAGGCTTCGGTGAGGCCTCTGACATTGCGTGTGTACAGTATTACAACGGCATTATGGTTCTGCCTGGTGTGGTTGATGACAGCAAAATGGCTTTGTACACTGCTGCTTTGACTGGTGGCATGCTTTTGGCCGCTTTCACTGCTGGAGCTTCT------------ATACCATTTTCCTTGGCTGTCCAATCTAGACTTAATTATGTAGCCTTGCAAACTGATGTTTTACAGAAGAATCAACAAATTCTGGCAACATCCTTTAACAATGCTATGAGCAACATTACTGTCGCTTTTACTGAAGTCAACCAGGCTATTAAAGAAACATCTGATGCCATTAATACTGTTGCTAAGGCCCTTGGCAAAGTTCAATCCGTTGTGAATGAGCAAGGTCAAGCATTGTCGCAGCTTACACGTCAACTTGCTTCTAATTTTCAGGCTATATCCTCCTCTATAGAGGATATATATAATAGGTTGGATAGCTTAGCTGCCGATGCCCAAGTAGACAGACTGATTACCGGCAGATTAGGTGCCCTTAATGCATTTGTCACACAAACTCTAACTCGCTATACCGACGCACGTGCTTCTCGTCAATTGGCTATTCAGAAGATCAATGAGTGTGTGAAATCTCAATCCATGCGTTATGGGTTTTGTGGTAATGGTACACATTTGTTTTCCATTGCTAATGCTGCACCTAATGGTGTTATGCTGTTCCACACAGTTTTGATCCCTACTGAATTTGTCACTGTTGAGGCTTGGTCTGGAGTCTGTGTCGATGGTACACATGGTCTCATTTTGCGTGATGTTCGCACTACACTGTTTCAACAAGGTAGT---------------------ACTTATTACGTGACTACACGAGACATGTTTGAACCACGAACACCTGTTGCTGCTGACTTTGTCCGTATTGCTAATTGTAGTGTGACATACGTCAATATTACTGCTGATTCTCTTGGTGAGATCATTCCAGATTAC------ATTGACGTGAATAAAACTCTTGAAGAGTTG------GGCAGGCCTAACTTCACACTGCCAGATTTCAACTTGGATCAGTTCAATAACACATATCTCAACCTTAGTGCTGAGATAGCTCTGTTGAACGCCAAGTCTGAAAGTCTGTACAACACTACTCAGAGACTTGAGAAATTGATTGAAAACATTAACAATTCTTACATAGACTTGGAGCTGCTTAATAGGCTTGAATCCTATGTGAAGTGGCCGTGGTATGTCTGGTTGGCAATCTTCCTGGCTTTGATACTGTTTTCATTTCTCATGCTTTATTGTTGTATGGCTACTGGTTGTTGTGGCTGCTGTAGCTGTCTTTCTAATTCATGCTTTGACTGTGGAGGACGACGTTTACAA------------------CGTTACGAAGTAGAAAAAGTCCACATTCAA >CMR66_NA_AWV67056_1_2013_12_Cameroon_Bat_Bat_coronavirus ------------ATGCTGCTGACTGTGGTCCTAAGTTTGGCACTTATTGCCTGTGATGCCAGTGCTACACGGCCTGAGTGTTTTGCTAATTCA---AACTTTCAGTTATACCCACGTAACCATACTGTTAACATTACTTCT---TTGTCTGTTAAC---------------------------GTGGCCAATTTGTTA---CTACCGGATCCTTATATAGCT------------------------------TATTCCGGTCAGACGTTACGACAAAATTTATTTATGGCTGATTTGTCTCGCACCATAATTTACCCTATAACACCGCCTGCTAAGGATAGT---ACTGGTGGT------------------------------TATATTTATAACACCACTATTTTACCTGTTGCGTCTGGT------CTGTTTGTGCATACATGGATGTACAGGCAAGAGTCTACCTCTAGGACGTAT---------------------TGTCAAGAACCTTTTGGTGTTGCATTTGGTGATACTTTTATCCAGGACCGCATCGCTATA---------------------------GTTATTATAGCCCCTGATAACCTAGGTTCATGGAATCAGGTTTCGTATCGTAACGTAACTACTGTACACTTAGTCGTGTGCAGTAATGCTACCTTGTGTATTAACCCTGGTTTCAATAGATGGGGACCAGCGGGT---------AATATTATAGCTTCCAATGCACTCGTC------GATCATTCGAACTCGTGCTTTGTGAACAATTCTTTT---AATGTGAGTATTAGTACTAGTAGGATT------------AATCTTGCTTTCCTTTTTAAAGATGGTGATCTTTTGATCTACCACTCTAATTGG---------TTGCCGAAGGGTAGTTTTGATTTTAATCAGAGCTTTCCT---------------TTACAATATTTTATGACTTTGCCGGTGGGCGGCAATTTACCGCGTGCCCAGTTTTTC------------CAGTCTATAGTTAGGCAGGGTGGTACTAATAATGGTGCAGACGATCGGTGCGTTGATTTTAATATTAGTTTGCATATAGCACATTTAGTTAATAGGGATTTGTTAGTTTCTTATTTTAATAATGGC---------------AGCGTCGCTAATGCGGCTGAC---------------------TGTGCCGAGAGTGCTTCGGAGGAGCTATACTGTGTTACAGGTTCATTC---------CAGCCACCTACCGGTGTATATCCTCTTAGTAGGTATCGTGCACAGGTAGAT---GGTTTTGTACGCGTAACTCAACGAGGCGACTATTGTCAGCCGCCTTACGCTGATCTTTTAGAACCACCACAA---CCGGTAGTG------TGGCGTCGTTTTATGCTCTATAAT---------------------------------------------------TGTGCATTTGACTTTAGTGTTGTTATTGATAACTTGCCTACACACCAATTGCAGTGTTATGGCATATCACCTAAGCGCCTGGCATCTATGTGCTACAGTAGTGTTACTATAGATGTCATGCGCATTAATGCTACG------------------CACTTGAATAATTTATTAAATCGAGTGCCTGATTCTTTTAGTTTGTAT---------------------------------------------------------------------AATTATGCTGTTCCTGACAAC---------TTTTATGGT---------------------------------TGTTTACATGCATTTTATTTGAATAGCACC---ACC---------------GCTTATGCTGTGGCGAACCGATTTCCCATCAAGCCGGGTGGTCGG---------------CAGAGTAATCGTGAT---------TATATAGCAACAGTGCTTAATGCTGCTCAT------------TACACT------------------ACA---------------------------TTT---TCCTATATTTTCGGTTTAGCT---------------------------------------------------GTTATAACGCTTAAACCTGCTTCTGGTAATAAACTGGTTTGT---------------------------CCAATAGCTAATGATACTGATATTATCACG------GAGCGCTGTGTTCAGTATAGTCTTTATGGTTATACGGGCACAGGCGTGTTATCTAAAAACACGTCTCTTACCGTACCTAACGGTAAGGTTTTTACAGCATCTAGTACGGGTGCTATTATAGGTGTGTTT------ATTAATGGCACTATGTACAGTATTACTCCATGTGTAACTGTGCCTGTGTCTGTAGGTTAT------CATGCCAATTTTGAGCGT---GTTTTATTATTTAATGGTTTGTCTTGTTCTCAGCGTTCACGTGCTGTATCTCGACCAGCATCTACATTA---TGGAATTTTTCCGTGTCGGATGAATCCGCT---------ATAGACACGCTATCTGGGTGTGTTGTAAATGCAATTTTGCATAATGATACTACTGTTAGTACATGCTCTATGCCTTTA------------GGCAACAGTTTATGTCTTATTAATGACACCACGGTTGCCATCGCTCATGCTGTTGGA---------CTACCCAAGTTGTATTTGGTTAATTATGATCCGTTGTATGATAATAATTCTGCAACACCTATTACGCCCGTTTATTGGGTGAAAATCCCTACTAATTTTACTTTAACTGCTACAGATGAGTTTATACAGACTAATGCTCCTAAAGTTACTATAGATTGCGCTCGTTATTTGTGTGGCGACTCATCGCGTTGTCTAAACATTTTATTGCATTATGGCACTTTTTGCGATGACATTAATAAAGCCCTTGCTAAAGTTAACACTATTTTAGATAGTGCATTGTTATCTTTGTCTAAGGAGCTTTCTATTAACACCCGTGATGAGATTCAGTCCTTTGCATTTGGTGGTGATTATAATTTTACTGGACTTATGGGTTGTTTGGGCCCTAATTGTGGTGCCACAACTTATAGGTCAGCGCTTTCTGATTTATTGTATGACAAGGTAAAAATTACTGACCCTGGTTTTATGCAGTCG---TACCAGAAGTGTATAGACTCGCAGTGGGGTGGTAGTGTGCGCGATCTTTTGTGCACGCAAACCTATAATGGTATAGCTGTTCTACCGCCCATTGTTTCTCCTGCTATGCAGGCGTTATATACTTCATTGCTTGTAGGTGCAGTTGCATCCTCTGGTTATACTTTTGGTATAACATCTGCAGGTGTTATACCTTTTGCTACCCAATTACAATTTAGGTTGAATGGTATAGGTGTTACTACGCAGGTGCTTGTTGAAAATCAGAAGCTTATAGCTTCTTCTTTCAACAATGCACTTGTTAATATTCAAAAGGGTTTTACT------------------------------------------GAGACTAGTATAGCTCTTAGTAAAATGCAAGATGTAATTAATCAACACGCCGCGCAATTGCAGACATTAGTTACGCAACTTGGTAATTCTTTTGGAGCCATTTCATCTAGTATTAATGAAATTTTCAGCCGACTTGAAGGTTTAGCTGCTAATGCTGAAGTCGATAGACTTATTAATGGTCGCATGATGGTTCTTAATACCTATGTGACCCAGCTTTTACTGCAGGCATCTGAGGCTAAGGCTCAAAATGCCTTAGCAGTTCAAAAGATTAGTGAGTGTGTTAAGGCTCAGTCACTACGTAATGATTTTTGTGGTAATGGCACCCACGTGCTAAGCATACCTCAGTTAGCGCCGAATGGTGTTTTATTTATACATTATGCGTATACTCCTACTGACTACGCTCTTGTACAGACTTCTGCTGGCCTTTGCTATAATGGTACT---------GGCTATGCTCCTTTGCGGGGCATGTTTGTATTACCCAATAAT---ACAAAC------------ATGTGGCATTTTACTAGTATGCAGTTTTATAATCCTGTTAATATTTCTTATAGTAATACTCAAATTCTTACTAGTTGTAGTATTAATTATACTAGTGTCAATTACTCGGTGTTACAGCCTAGTGCGCCCAGTGAT------TATGATTTTCAGAAAGAGTTTGACAAGTTTTATAAAAACTTGTCTACTAGTTTTAATAATACTTTTAACCCTAATGATTTTAATTTTTCTATGGTAGATGTTACTGCTCAGATTAGT------------------------------------------TCACTTCATCAAGTTGTTGATCAGTTAAACCAGTCTTTTATTGACCTTAAGAAGCTTAATGTTTATGAGAAGACCATTAAGTGGCCTTGGTATATTTGGTTAGCAATGATAGCGGGTATAGTAGGTCTTGTACTCGCTGTTATTATGCTTATGTGCATGACTAACTGTTGTTCATGTTTTAAAGGCATGTGC---GACTGTAGACGTTGCTGTGGTTCTTATGACTCATATGATGATGTGTATCCTGCTGTGCGTGTTAATAAGAAACGAACAGTA >CMR704_P12_NA_AWV67040_1_2013_12_Cameroon_Bat_Bat_coronavirus ------------ATGGTCGTCTTATTGTTCGTGATGTTTAGTTTAGTGGTAGCTGAC------------AGGCCTAATTGTTATTTGCCT------CAGTATTCTTACACTATTTCACCAGCAACCATCACTAACACCTCCTATTTTAATGTCAAT---------------------------CCCATTTCCATTGTT---GTCCCCGAGTTTTCAGTTGCG------------------------------CGCACCAACCTTGTTGTGCGCCAGCGTTTACAAGTTGCTGCTTATGAT---TTTACTAAGATACCCATTACACCGCCACACCGTAGT------------------------------------------------ATTTTTAATAACACTTATTTTCGTGTAGGCGATGGT------ATTTTAGTGAATACTCACATGTATCACAGAACTAACATAGCTACCAACTTAGGT---AGCTCCTTCTATGGTTGTCAAGAGCCTTTTGGTGCAGCCTTTGGCAACACTTTTGTTAATGAACCCATAACTTTA---------------------------GTTATGTTTTATGCAGGCAATGTTGGTAGTTGGTCTAGTCTTGTTACTCAGCAGCAAGCTAACATCACCATAGTGTCTTGTGATAACGCCACTTTGTGTGCTAACCCCTTCTTTCTAAGATGGGGTCCAGGTGTCATACGC---AGTTTTACTATAAGTAATGCATTTCAG------TGTCATGGTAATTATACATTTTATGACACTAAACTTGTTAATTTTACTGTTTCCACTGCTCGCTAT------------AATTTAGCTTTTACTTTTGCAGATGGTGACATTTTTATGTAC------TATGCT---------GCACTGGGTGATTCTTTGAATTTACCTACTGCTTACCCG---------------CTGCAGCCATATTTACGTATACCTGCTGGTTTTAAACCAGATGTTGTACAGTTTTTC------------CAGGCCATAACACGCCCC------AATGGTGAAAGTGCTGAAGTTGCTTGTGCTTCTAGCACCGTTTCTTGGTATGTGTCGCGGTTGTATTATAAAGAGCTACTGGTTGGTTATGATTCTTACAGT---------------AGTATCGTTAATGTTAGTTTT---------------------TGTTCTTCAGATGCTGAAAGTGAGTTGCAGTGCTTGTTGGGTACATTT---------GCGCCAGCTAATGGTGTTTATTCACTCAGTAATTTTCGTAGTAGTCCCACT---GACAATGTACGTATCACTAACAGTGCTTCTTCTTGTAGTGTACCTTATTCTGTTTTGAGTCGGCCACCTTTA---CCTTTTGTA------TGGAAGCGTTATGCCATTTCCAAT---------------------------------------------------TGTAAGTTTGATTTTCAGGCATTGCTTAGCCATTTGCCTACATTTCAACTTCGCTGTTTTGGCATATCGCCTACTAAGCTTGCCACTATGTGTTTTGGCACTGTCACTTTAGACATTATGTTGGTTAATGTTACT------------------CATTACAATAACCTCCTTAATGATGTTCCTGATGATTTTAGCCTTTAT---------------------------------------------------------------------AATTATCAATTACCGCGTAAT---------TTCTACGGT---------------------------------TGTTTGCATAGTTATTATTTACCTAATGAC---ACT---------------GCATTTAGTTATACTGTAGCTTCGCGCATACGTTACCCTTCTTGG---------------GTGCATTCTATCACACCTGGTGGTAGACAACCCGTTGGCCCTTTCTTAGATTCC------------TTACAAAGTTCCAGCAAG---CCTTGT---------------------------ACC---GGATCATGTTTAGGTTTAGCC---------------------------------------------------GTTATTTCTTTAAGTATAGCCTCGGCAAACAAATTAGTTTGT---------------------------CCAGTAGGCAATGACACAGATATTGTGCCT------GACACTTGTGTCAACTACAATATTTATGGTTATCAAGGCACTGGTGTTATTAGTAGG---TCAAATTACACTTTGCCCTCTTCTAAGGTTTTCTCGCTTAGTTCTTCTGGTGAGTTGACTGTCTTTGCA------GTTGGTTCTTCTTTTTACCAGCTATCTCCGTGTGCATTTGCTCCTATATCTGCAGCTTTT------TATAAGGGTTACACTACT---TCTTTGTTGTTTAATAACCTTCCTTGTTCCAACCGGCATCGTGCAGTCGTGGAACCTGTTAGTGCTTAT---TGGCGTCGTAGTGTTGCAGACAATAACACG---------TTTGACACAACTGCTGGGTGCATTTTTAATGCGTATAATTTAACTAGCATTGTAGTTAATCAGTGTGATTTACCTATT------------GGTGATAGTTATTGTTTACAACCATCCCTTATTAAGGGTTTTGAAGCCACATTATCA------------------------TTGGTTACGTACAACCCATTG------GCTGATTCTTTAACACCTATCACACCGGTTTATCAAGTTTCAGTGCCTACCAATTTTACTTTGGTAGCTTCTACTGAATATATTCAAACTTATGCATCAAAAATTTCTATTGATTGTGCTAAGTATTTATGTGGTGATTCTTCACAGTGCAGAACGGTGTTGTTGCAGTACGGCACATTTTGTAATGATGTTAATGTTGCTTTAACGAGGGTTTTTACGTTGCTTGACAATTCACTCGTTGATACGTTTTCATCCTTGAAGTCCACAGCACCAGTTCAG---------TTAGCTTATACGGGTGATTTTAATTTCACATCGTTAGTGGGCTGTATTGGTACTGATTGTGATTCTAAGTCACATAGGTCCGCTTTGTCAGATCTATTGTTTAGTAAGGTTAGTGTTGCTGACCCAGGTTTCATGCAATCT---TACCAACAATGTTTGGATGCACAGTGGGGTGGTAATATACGTGATTTGCTTTGTACTCAGACGTTCAATGGCATCTCAGTATTGCCACCCATTGTATCTCCTTCCATGCAGGCTCTCTATACGACCGCCTTAGTCGGTGGCATTGCAGCCTCTGGTTTTACTTTTGGTGTGTCATCTGCTGCTGTAATTCCTTTTGCCACACAGTTGCAGTTCAGACTTAATGGGTTAGGTGTGACCACTAATGTTTTAATGGAGAATCAACAATTGATAGCTAATGCTTTTAATAAGGCTCTTGTTTCGATACAGGAAGGGTTTACA------------------------------------------GCCACTAATCAGGCTCTAAACAAAATCCAAACTGTTGTCAATAACAATGCCTTGCAATTGCAAGTGTTAGTGCAGCAGTTGGGTAATACATTTGGTGCTATATCAGCATCTGTTAATGAAATTTTTAGCCGTCTCGACTTGTTGGAGGCTAATGCCGAAGTTGATAGGCTGATTTCTGGTCGTATGGTTGTACTTAACACATATGTGACTCAGTTGCTTATTCAAGCTTCTGAACTTCGGTCTCAGGCGGAATTGGCTAAGCAAAAGATGTCCGAATGTGTTAAGTCTCAATCTTTGCGTAATGACTTCTGTGGTAACGGGACTCATGTTCTTAGCATACCTCAGTTAGCTCCTAATGGCATGCTGTTCATACATTATAGTTATCAACCTACTAAGTATGCACAGGTGTATACCACGGCGGGCCTATGCTTCAATGGTACA---------GGCTTTGTTCCTAGGGATGGTTTGTTTGTCAGGGAAAACAATGAATCCCAA------------GTTTGGTATTTTACTAAGGCAAGTTTTTACAATCCTGTGAACTTGTCTTATGAGAACACTCATTTATTAGACACTTGTGGTGTTAATTACACTACAGTCAATAATAGTGTGTTGAACCCAATTGAACCTCCTAAT------TATAATTTTCAGGAAGAGTTCGATAAGTATTTCAAGAACCAGTCTTCTCAGTTTAATATCACTTTTGATTCTTCTCAGTTTAATGTTTCTATTGTTAATTTGAATGAACAGATGGCT------------------------------------------GCTTTAGATTCAGTCGTTAAGAGTCTCAATGAATCTTTCATTGACCTCAAGAAGCTAGGTGTGTACACGCAGCAACCAAACACACCCTGGTATGCGTGGTTAGGTATGATTGCAGGTTTAGTTGGACTCGCCTTAGCTGTTTTTATGCTTTGTTGCATGACCAACTGCTGCAGTGGATTCAGGGGCATATGC---TCTTGTAAGCAATGC------CAGTATGATGATTATGCTGACGTTTACCCAGCTGTTCGAGTTAGTGGTAAACGAACAGTA >CMR900_NA_AWV67048_1_2013_12_Cameroon_Bat_Bat_coronavirus ------------ATGGTCGTCTTGTTATTCGCGATACTTAGTATCGCACTTGCTGAT------------AGACCATTATGCACTATTAATACTGGGAATTATGTTCTTAATCCCATTCAGGCCAACATTACTTATACAGTTGTTAATTCCATTAAT---------------------------CCTGTTTCTCTTGTT---GTTCCAGAATTTTCCATAGCG------------------------------CGGACTAATTTGGTTGTGCGTCAACGTTTGTATGTTGCT---GCTACGAATTTTACCAGAATACCAATTACCCCACCAGGTCGTGCC---------------------------------------------GTTATTTTTAATAATACTTATTTTGATGCTGAAGATGGG------TTTTTCGTTAATACTCACATGTACCACACTAATAATATTGCTACTAGTCCTAACAAACCTAATTTTTATGGTTGTCAGGAACCTTTTGGTGTTGCTTTTGGCAACACCTTTGAGAATGAACCCATTACTTTA---------------------------GTGATGGTTTATGCTGGTAATATAGGTAGTTGGACTAATACTGTAACACAGACTAGTGCCAACATTACTATAGTTTCATGTGACAATGCCACCTTATGTAGTAATCCGCTTTATTTGAGGTGGGGACCAGGTGGCTTGCCA---GGTTATGTTATAAAGGATGCTTTCCAT------TGTCATGGTGATTACACTTTTTATGATTCTAAAATCATCAATTTTTCCGTAGACTCGTCTCGCTAC------------AATTTTGCGTTCAGTTTTGCGGATGGTGATATTTTCATGTAT------TATGCC---------CCATTGGGTGATTCTCAGAATGTTGCTAAGGCTTTTCCT---------------TTGCAACCTTATCTGAGAATACCTGCTGGGTTTAAACCTAAGCGCGCTCAATTTTTC------------CAGGCAATCATCCGGAAA------ACTGCTGAAGATGCAGAGTTTCAGTGTTCGCGTTATACTACCTCATGGTATGTTTCCTATTTAAAGTACCATGAGTTGTTAGTGGGTTATGATGCTAATAGT---------------ATCATTTCTAATGTTAGTACA---------------------TGTTCTTTTGATGCGGAGAGTGAATTACAATGTTTGCTTGGAACGTTC---------ACCCCTGCTAATGGTGTTTATTCTCTTAGTAATTTTCGTAGTAGCCCTGTT---GATACAGTGCGTATCACTAATAGTGCCAAGGCTTGCAGTGTACCCTATAATCTTTTGGAGACCCCTCCATTA---CCTTTTGTT------TGGAAGCGTCATTCCATATCTAAT---------------------------------------------------TGTAAGTTTGATTTTCAGGCATTGCTTAGTCATTTGCCTTCATTTCAATTACGTTGTTATGGCATTTCCCCAACCAAGCTCTCCAGCATGTGTTTCGGAACTGTCTCTTTAGACGTTATGTTGGTTAATGTTACC------------------CATTACAATAATCTGCTTAATGATGTTCCAGATGATTTTAGTCTTTAT---------------------------------------------------------------------AATTATCAATTACCTCGCAAC---------TTTTATGGT---------------------------------TGTCTGCATAGCTATTACTTACCTAATAGT---ACT---------------ACATTCAATTACATCGTTGCGTCTCGTTCTCAGTCTCCATCCTGG---------------GTTTACAATATATCCCCGGGTGGTAGACAACCACCCAGTTCATTCCTAAACACG------------TTACCTGGCTCTGCTAAG---CCTTGC---------------------------CAG---GGATCTTGTTTAGGGTTGGCT---------------------------------------------------GTTATTTCACTGAGTGTTGCCTCTGCAAACAAACTTGTTTGC---------------------------CCGGTAGGCAATGATACGGATATTGTGACT------GGCAATTGTGTCAATTACAACATTTATGGTTATCAAGGTACTGGTGTTATTACCACT---TCTAATTACACCTTGCCATCCACTAAGGTCTTTTCACTCAGTGCTTCTGGTGAATTGACAGTCTTCTCT------GTGGGTTCTTCTTTTTATCAGTTGTCACCATGTGCTTTTGCACCTATATCTGCAGCCTTT------TATAAGGGTTATACCACT---TCTTTGCTTTTTAATAATTTGCCTTGTTCAGGCCGTAGTCGTGCTGTCGTGGAGCCCGTTAGTGATTAT---TGGCGGGCTAGTGTTGTTAACAATAGCACT---------TTTGACACTTCTGCTGGCTGCATCTTCAATGCTATTAATTCAACTAGCATTGTCGTCAACCAGTGTGATTTGCCAATT------------GGAGATAGTTATTGTTTACAACCTTCAACCATTAGCCGCCAGGGCTCTACTTTATTA------------------------TTAGTCACTTATGACCCTTTG------TCTGATACTTTGACCCCTATCACACCAGTTTATGAGATTTCGGTGCCTACCAATTTTACTTTGGTAGCGTCCACTGAGTACATCCAGACTTACGCATCAAAAATTTCCATTGATTGTGCTAAGTATTTATGTGGTGATTCTTCACAGTGTAGAACGGTGTTGTTGCAGTACGGCACATTTTGCAATGATGTTAATGTTGCTCTAACGAGAGTTTTCACTTTGCTTGATAATTCACTCGTTGATACATTTTCATCTTTGAAGTCCACAGCACCGGCTCAG---------CTAGCTTATACAGGCGATTTTAATTTCACCTCTTTAGTTGGCTGTGTTGGTACTGATTGTGATTCTAAGTCATATAGATCTGCTTTGTCTGATCTCTTGTTTAATAAGGTAAGTGTTGCTGACCCAGGTTTTATGCAGTCT---TACCAAAAATGTTTGGATTCACAGTGGGGTGGTAACATACGTGATTTGCTTTGCACCCAGACGTTCAATGGCATCTCAGTTTTACCACCTATCGTGTCCCCATCTATGCAGGCTCTTTACACTACAGCCTTAGTAGGCGGTATAGCAGCATCTGGCTTTACCTTTGGTGTGTCTTCTGCTGCTGTAATTCCTTTTGCCACACAGTTGCAGTTCAGACTCAATGGGTTAGGTGTGACTACTAATGTTTTAATGGAGAATCAACAATTGATAGCTAATGCTTTTAATAAGGCTCTTGTTTCGATACAGGAAGGGTTTACA------------------------------------------GCCACTAATCAGGCTTTAAACAAAATCCAAACTGTTGTTAATAACAATGCTTTACAATTACAGGTGTTAGTGCAGCAGTTAGGTAATACATTCGGTGCCATATCAGCATCCGTTAATGAAATTTTTAGCCGCCTTGATTTACTAGAGGCAAATGCCGAAGTTGATAGGCTGATTTCTGGGCGTATGGTTGTACTTAACACATATGTGACACAGTTGCTTATTCAGGCGTCTGAACTAAGGTCTCAGGCTGAATTGGCTAAGCAAAAGATGTCCGAATGTGTCAAGGCTCAATCCACGCGTAATGATTTCTGTGGTAATGGTACCCATGTTTTTACCATACCACAGTTAGCACCTAATGGCATGCTGTTCATACATTATAGTTATCAACCTACTAATTATGTACAGGTGTACACCACAGCTGGCCTTTGCTTTAATGGTACC---------GGCTTTGTTCCCAGGGATGGTTTATTTGTTAGGGAAAACAATGCATCTCAA------------TTATGGTACTTCACTAAGGCAAGTTTTTACAACCCTGTAAACTTGTCTTACGAGAATACTCGTTTATTAGATACCTGTGGTGTTAATTACACTACAGTTAATAATACTGTGTTGAACCCAATCGAACCTCCTAAT------TATGATTTTCAGGAAGAGTTCGATAAGTATTTCAAGAATCAGTCTTCGCATTTTAATATCACTTTTGATTCTTCTCAGTTTAATGTTTCTATTGTTAATTTGAATGAACAGATGGCT------------------------------------------GCTTTAGATTCAGTTGTTAAGAGTCTCAATGAATCTTTCATTGACCTCAAGAAGCTAGGTGTGTACACGCAGACTATCAAGTGGCCATGGTATGCGTGGTTAGGTATGATAGCAGGTCTAGTTGGTCTTGCTCTAGCTGTTTTTATGCTTTGTTGCATGACCAACTGCTGCAGTGGATTCAGGGGCATATGC---TCTTGCAGGCAGTGC------CAGTACGACGATTATGCTGATGTTTACCCAGCTGTTCGAGTTAGTGGTAAACGAACTGTA >JPDB144_S_ANA96039_1_2012_12_China_Bat_Bat_coronavirus ------------ATGACACGCTTAATGTGTCTACTGATGTCCTTGTTAATTTTCGTAAGAGGCTGTGAAGCACAGTTTGTAGATATGAGTCCTGCTAGTAACAATAGTGAATGTTTAGACTCACAAGTTGATGCCGCTGCATTTTCTAAATTAATGTGGCCATATCCTATTGATCCGTCTAAAGTAGATGGTATTATA---TACCCCGTTGGTCGGACATAT------------------------------TCTAATATTACATTGTCATATACTGGCCTATTCCCATTGCAAGGAGATTTAGGTACACAGTATTTATATTCTGTGAGTCATGCTGTAGGTCATGATGGTGACCCTACAACAGCTTATATT------------TCTAATTATTCACTTTTGGTGAATGCTTTTGATAACGGTTTTGTTGTACGAATTGGTGCTGCAGCTAATTCAACTGGCACTATTGTAATCTCGCCGTCTGTCCAAACTAAGATTAAAAAGGCTTATCCT---GCTTTTATCTTAGGTTCATCTCTTACTAATACTTCTGCTGGTTTG------CCGTTGTATGCTAATTACAGCCTAACCATCATTCCTGATGGTTGTGGTACTGTCTTGCATGCTTTTTATTGTATATTACAACCCCGTACTCAGAACAGATGTCCTGGTAACGGTGGTTATAAG------GCTTATTTCGTATATGAAACTATTCATAATGATTGTGTTCCTGCTATTAATAAG------AAT------------------GCGTCTCTTAATTCTTTTAAGACA---TTTTTTGATCTTGTTAATTGCACTTTCTTTGATAGTTGGGATATCACCGCTGATGAAGTTAAGGAGTGGTTTGGTATCACCCAAGATACTCAGGGTGTACATCTTTACTCTTCTAGGAAAGGCGATTTGTATGGTGGTAAC---------------ATGTTTCGCTTTGCTACACTACCTGTG---------TATGATGCTATAAAATATTAC------------ACTGTCATACCCAGA------------AGTTTTCGGGCTAAGGCTAATAGAAGGGAGTCTTGGGCTGCCTTTTACGTGTATAAATTACATCAGCTGACTTACTTGTTAGATTTCTCAGTTGATGGT---------------TATATACGTAGGACTATAGAT---------------------TGTGGACATGATGATTTGTCACAGCTACACTGTTCTTATACATCTTTT---------GAGGTTGACACAGGTGTCTATTCTGTCTCTTCGTATGAAGCTTCAGCAACA---GGCACTTTTATTGAACAACCTAATGCTACTGAGTGT------GATTTTTCACCTATGCTTAAAGGTGTGGCA---CCTCAGGTTTATAATTTTAAAAGGTTGGTTTTTTCCAAC---------------------------------------------------TGTAACTATAATTTAACTAAACTCCTCTCTCTTTTTGCAGTCGATGAGTTTTCCTGTAATGGAATTTCACCTGATGCTATAGCACGTGGTTGTTATTCTACTTTAACAGTGGACTATTTTGCTTATCCACTTAGT------------------ATGAAATCGTATATTAGACCTGGTTCGGCCGGCAATATACCTTTATAT---------------------------------------------------------------------AATTACAAGCAGTCGTTTGCC---------AATCCAACC---------------------------------TGTAGGGTTATGGCATCTGTGCCTGCTAATGTTACCATTACTAAGCCTGAAGCTTACGGCTATATTTCTAAGTGTTCTCGCCTAACTGGTGATTATCAACATATTGAAACACCGCTTTATATTAACCCTGGT---GAGTACTCTATTTGTAGAGATTTTGCACCA------------TGGGGATTTTCTGAAGACGGTCAGGTTTTTAAGCGCACTCTTACTCAATTTGAGGGTGGTGGTCTCCTTGTAGGAGTCGGCACTAGAGTACCTATGACTGCA------------AACCTAGAAATGGGTTTTGTAATCTCTGTTCAATATGGTACCGACACTAATAGTGTGTGC------------------CCCATGTTGGATTTAGGTGAGTCTTCAACTATTACAAACCGTTTAGGTAAGTGTGTAGATTATTCACTCTATGGTGTTACCGGTAGAGGTGTTTTTCAAAAT---TGTTCTGCTGTTGGTGTTAAACAGCAGCGGTTTGTTTATGATAGCTTTGACAATTTAGTTGGTTATTAT---TCTGATGATGGTAACTACTATTGTGTCAGACCATGTGTTAGTGTGCCTGTGTCAGTTATATAT------GACAAAGACACAAATTTACATGCGACTTTATTTGGGAGTGTAGCTTGCGAGCACGTTACTACTATGATGTCACAGTTTTCACGTCTCACTCAGAGTAATTTGCGTAGACGTGACTCTAATGCC------CCTCTTCAAACAGCTGTTGGCTGTGTTGTGGGTCTTTCTAACAATTCGCTA---GTTGTTAGTGATTGTAGATTGCCTTTA------------GGTCAATCGCTTTGTGCAGTACCTCCTGTTACTTCTTTTAGAAGACGTAGTGCAAGT---------GAGTTTCAACTTGCTGTACTCAATTATACGTCACCCATTGTAGTGACACCTATTAAT------TCTAGTGGTTTCACCGCCGCCATTCCAACTAATTTTTCTTTTTCAGTTACACAGGAGTATGTTGAAACATCTATTCAGAAGGTTACTGTTGATTGTAAACAGTACGTCTGTAATGGCTTTAGTAGGTGTGAAAAGTTACTGGTTGAATATGGACAATTTTGTTCTAAAATAAACCAGGCTTTACATGGTGCTAATCTTAGACAGGATGAGTCTGTCTATAGTCTTTATAGTAATATTAAAACCACTTCTACTCAAACT---CTTGAGTATGGTTTAAATGGTGATTTTAATCTTACA---TTATTACAAGTACCGCAAATTGGAGGTTCTTCCTCTGGTTATCGTAGTGCTATTGAGGATTTATTGTTTGATAAGGTTACTATTGCTGACCCTGGTTACATGCAGGGT---TATGATGATTGCATGAAG---CAAGGCCCTCAATCTGCTAGGGATCTTATTTGTGCACAGTATGTGTCTGGTTATAAAGTTTTACCACCACTTTATGATCCTAATATGGAAGCTGCTTATACATCTTCACTATTAGGTAGTATAGCTGGTGCTGGGTGGACTGCTGGTCTTTCATCTTTTGCGGCTATACCTTTTGCACAAAGTATGTTTTATAGGTTGAATGGTGTTGGCATTACTCAACAAGTTCTCTCAGAGAATCAAAAGTTGATAGCTAACAAATTCAATCAGGCTTTAGGTGCTATGCAAACTGGCTTTACT------------------------------------------ACATCAAACCAAGCTTTTAGTAAGGTTCAAGATGCTGTAAATGCCAATGCACAAGCACTTTCAAAGTTAGCATCAGAATTATCTAATACTTTTGGTGCTATCTCTTCATCCATCAGTGACATCCTTGCTAGGCTTGACACTGTTGAACAGGACGCTCAAATTGATCGTTTGATCAATGGGCGTTTAACTTCTCTTAACGCATTTGTTTCGCAACAACTTGTGCGTTCTGAAACTGCTGCTAGATCTGCTCAGTTGGCTAGTGATAAAGTCAATGAGTGTGTTAAGTCACAATCCAAGAGAAATGGCTTTTGCGGGTCTGGCACTCATATAGTATCATTTGTTGCTAATGCTCCAAATGGTTTTTATTTCTTCCATGTAGGTTATGTTCCTACTAATTTTACTAATGTTACAGCAGCATATGGCTTATGTAACAATAATAATCCGTTATTGTGCATAGCACCTATTGATGGGTATTTCATTACTAATCAAACTACCACTTATAGTATTGATACCGAATGGTATTATACAGGTAGTTCTTTCTTTAAACCTGAACCTATTACTCAGGTTAATTCACGTTATGTTTCCAGT---GACGTGAAATTTGAAAAGCTTGAGAATAACTTACCACCTCCTCTCCTTGAGAATTCCACTGATGTGGATTTTAAGGATGAGTTGGAAGAATTTTTCAAGAATGTTACCTCGCATGGTCCTAACTTTGCAGAGATATCTAAGATTAACACTACACTGCTTGACCTTTCAGATGAGATGGCA------------------------------------------ATATTGCAGGAAGTTGTTAAACAATTAAATGATTCCTACATTGATCTTAAAGAATTGGGGAATTATACTTATTATAACAAGTGGCCATGGTATATATGGCTCGGTTTTATTGCAGGCCTTGTTGCCTTGTTACTTTGTGTCTTTTTCCTGCTATGCTGTACTGGTTGTGGTACTAGCTGCTTAGGAAAAATG---AAGTGTAGGAATTGTTGTGATTCTTATGAAGAC---------------------TTTGATGTCGAAAAGATTCATGTTCAT >JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus ---------ATGTTTATTGTATTTCTCATTAGTTACACAACTTTTCTCATTCCTTAT---------------------------------------ACAGCTACAACAACATGTTTCTCAGGGCCTACAATAGAGAATAAG---TTGAACATATCC---------------------TCAGGTAGTAGGGGTGTTTAT---TACCCTGATGACATTTTTCGT---------------------------TCC---AATGTTAGTGTGTTGGTGACAGGACGTTTCCTTCGCTTTAACACCACTCTTACGTGGTACAAT------------------TCA---------TGGAAC------------------------------CAGGCTTATTCTTCACCTGTCTTGCCTTTTGGGCATGGT------GTTTACTTTTCAACC------ATTGACAAATCCAATGTTGTCAGAGGTTGG------------------------------------------ATTTTTGGAACCACGTTAGATAACACCACTCAATCCGCA---------------------------TTGCTTGTG---------------------------------------AACAATGGTAGTGCTATTACAATAGAAGTCTGT---TACTTCCAATTTTGTGACAACCCTGCCTTTATAATTAGTGGCGGTGCACAAACAAAC---ACTGCTATCTATATCAACTTACGTAAT------TGTACATATGTGGATACACTACGTGACTTACCATTA---AGTTTTGAGGATGTTGATGGTGGTTTTAAACACTTACGTGAGTTTGTATTCAAGAATAGTGATGGGTTTTTGCACATTTATGGTGCTTACCAG---------CCTTACGACTTAGCCATAGGTGCTACGGCTGCACTACCAGCTCAATTCCTGCCTTTAAAGCCCCTATGGAAACTGCCCCTCGGTTTAAATATTACTAATTATAAGGTTGTG------------ACAACTTTAAAACCC------------------------------ACAAATCAGGCCTTCCAAGCTGCTTATATAGTGGGTAACTTAAAACATACAACTATGATGTTGTCTTTTAATGAAAATGGC---------------ACTATGTCCAATGCTATTGAT---------------------TGTTCTCAGGACCCATTGGCTGAGCTAAAGTGCACACTCAAGCAGTTT---------GATGTAGGTAAAGGTATTTACCAAACGTCAAACTTCCGAGTTCAACCTACTGTTGATGTTGCGCGCTTTCCAAATATTACTAACGTGTGT------CCTTTTGACAAGGTTTTTAATGCTACACGCTTTCCTAGTGTCTATGCGTGGGAAAGAACAAAGATTTCCGAT---------------------------------------------------TGTGTTGCAGATTACACTGTTTTCTACAACTCAACTTCTTTTTCGACTTTCAACTGTTATGGAGTGTCTCCTTCTAAGTTGATTGATTTGTGTTTTACAAGTGTGTATGCAGATACATTTTTGATAAGATTTTCC------------------GAAGTCAGACAAGTAGCACCTGGTCAGACTGGTGTTATTGCAGACTAC---------------------------------------------------------------------AATTATAAACTACCTGATGAC---------TTTATAGGT---------------------------------TGTGTTATAGCTTGGAACACAGCCAAGCAA------------------GACGTCGGTAGCTATTTTTATAGGTCCCATCGTTCTAGCAAATTAAAA---------------CCCTTTGAAAGAGACCTTTCATCAGAAGAAAATGGTGTCCTTACACTTAGTACC------------TATGATTTTAATCAAAATGTACCTCTT---------------------------GAG---TACCAAGCCACTAGAGTCGTT---------------------------------------------------GTTCTTTCCTTTGAACTTCTTAATGCACCTGCTACAGTGTGT---------------------------GGACCAAAGTTATCCACTCCATTGGTTAAG------AACCAGTGCGTCAACTTCAACTTTAATGGACTTAAAGGTACTGGTGTGTTGACTGAC---TCGTCCAAAACGTTTCAGTCTTTTCAGCAGTTTGGTCGGGACGCATCTGATTTTACTGATTCTGTGCGTGACCCGCAAACTTTACAGATACTTGACATTTCACCGTGCTCTTTTGGTGGTGTAAGTGTCATAACACCAGGAACTAACACTTCATCTGCAGTGGCTGTTCTTTACCAAGATGTAAACTGCACTGATGTTCCTACAACAATACATGCAGATCACTTAACACACTCTTGGCGTGTTTATACCACTGGACCCTATGTT---------TTCCAAACACAAGCAGGGTGCCTTATAGGAGCTGAACATGTCAAC------GCATCCTATCAGTGTGACATTCCAATT------------GGTGCTGGCATTTGTGCTAGCTATCATACAGCCTCACTTTTACGGAGTACAGGTCAA------------------AAATCTATTGTGGCCTATACTATGTCATTAGGTGCTGAAAATTCTGTGGCATATGCTAATAATTCA---ATTGCCATACCTACTAATTTTTCTATTAGTGTCACTACTGAAGTGATGCCTGTTTCTATGGCTAAAACATCTGTCGATTGTACTATGTACATCTGTGGTGATTCTTTAGAGTGCAGTAACCTACTGCTTCAGTATGGTAGCTTCTGTACCCAACTCAATCGTGCCCTTTCTGGCATTGCTGTTGAACAGGACAAAAATACCCAAGAGGTGTTTGCCCAGGTTAAACAGATGTATAAAACACCA---ACCATAAGAGATTTTGGTGGT---TTTAATTTCTCTCAGATATTA------------CCAGACCCTTTGAAGCCTACTAAGCGTTCTTTTATAGAGGATTTGCTCTATAACAAAGTAACACTCGCGGATGCTGGTTTCATGAAACAG---TATGCAGACTGTTTG---------GGTGGTATTAACGCAAGAGATCTCATCTGTGCTCAAAAGTTTAATGGGCTGACAGTCTTACCACCTTTGCTCACTGATGACATGATTGCTGCCTATACTGCAGCGCTCATTAGTGGCACTGCCACTGCAGGCTGGACTTTCGGTGCAGGTGCAGCCCTTCAAATACCTTTTGCTATGCAAATGGCTTATAGGTTTAATGGCATTGGAGTTACTCAAAATGTTCTCTACGAGAACCAAAAACAAATTGCCAACCAGTTCAATAAGGCTATTACTCAAATTCAAGAATCACTCACA------------------------------------------ACTACAGCGACAGCGCTGGGCAAGCTGCAAGACGTAGTCAACCAGAATGCTCAAGCATTAAATACACTTGTCAAACAACTTAGCTCCAATTTTGGTGCTATTTCAAGTGCTTTGAATGATATCCTCTCACGACTTGACAAAGTTGAGGCAGAGGTGCAAATTGACAGGTTGATTACAGGCAGATTACAAAGCCTCCAAACCTATGTAACACAACAACTAATCAGAGCTGCTGAAATCAGGGCTTCTGCTAATCTTGCTGCTACCAAAATGTCTGAGTGTGTTCTTGGACAATCTAAAAGAGTTGATTTTTGTGGAAAAGGCTATCACCTTATGTCTTTCCCTCAATCCGCTCCACATGGTGTTGTGTTCTTACATGTCACTTATGTGCCAGCACAAGAAAAGAACTTCACTACTGCCCCAGCAATTTGTCATGAAGGCAAG---------GCATACTTCCCTCGTGAAGGTGTGTTTGTATCTAATGGCAGT---------------------TCTTGGTTTATTACACAGAGGAATTTTTATTCGCCACAGATAATCACAACAGACAATACATTTGTCGCCGGAAGTTGTGATGTCGTCATTGGAATTATTAATAATACAGTTTATGATCCTCTGCAACCTGAGCTT------GACTCATTTAAACAAGAGCTAGATAAGTACTTCAAAAATCATACATCACCTGATGTTGATCTTGGCGACATTTCAGGCATCAATGCTTCTGTCGTCGATATTCAAAAAGAAATTGAC------------------------------------------CGCCTCAATGAGGTTGCCAAAAATTTAAATGAATCACTCATTGACCTTCAAGAACTTGGCAAATATGAGCAATATATTAAATGGCCTTGGTATGTCTGGCTTGGCTTTATAGCAGGGTTAGTAGGATTATTTATGGCCATCATTCTTCTTTGTTACTTTACTAGCTGCTGTAGCTGCTGTAAAGGCATGTGC---TCCTGTGGTTCTTGCTGC---AGATTTGATGAA---GACGACTCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTACACA >Jiyuan_84_NA_ARI44809_1_2012_China_Bat_Bat_coronavirus ------------ATGAAAATTTTAATTTTTGCTTTCCTAGTTACCCTAGTT---------------------------------------------AAAGCACAAGAAGGTTGTGGCGTGATCAACCTCAAGACACAACCTACATTAACACAAGTC------------------TCCTCCTCGCGTAGAGGTGTTTAT---TATAATGATGATATATTCCGT---------------------------TCT---GATGTTTTACATCTCACGCAGGATTATTTCTTACCATTCCATTCTAACCTAACACAGTACTTTTCTCTTAATATTGAGTCAGAT---------AAAATT------------------------------GTTTATTTTGACAATCCCATATTGAAATTTGGTGACGGT------GTTTACTTCGCAGCC------ACCGAAAAGTCTAATGTAATAAGAGGCTGG------------------------------------------GTGTTTGGTTCCACTTTTGACAACACCACTCAGTCTGCT---------------------------ATTATAGTC---------------------------------------AATAATTCCACACACATTATTATACGTGTGTGC---TATTTTAACCTCTGTAAAGATCCCATGTATACCGTGTCTGCTGGCACCCAAGTGTCC---TCATGGGTTTACCAGAGTGCTTTCAAT------TGCACATACGATAGAGTGAAAAAAAGCTTCCAACTA---GACACATCCCCTAAGACTGGTAATTTTACTGACTTACGTGAGTTTGTCTTTAAAAATCGTGATGGGTTTTTCACTGTTTACCAGACTTATACC---------CCAGTTAACCTCCTTAGAGGTTTGCCATCAGGTCTTTCAGTT------------TTAAAACCCATTCTTAAATTACCGTTTGGAATTAATATTACTTCTTTTAGAGTGGTT------------ATGGCAATGTTCAGC------------------AAAACCACTTCTAATTATGTGCCAGAAAGTGCTGCTTATTATGTGGGCAATCTTAAACAGTCCACTTTTATGCTCAGCTTTAATCAGAATGGA---------------ACTATTGTAGATGCTGTGGAT---------------------TGTTCTCAAGATCCACTTGCAGAGTTAAAGTGTACTACAAAAAGTTTT---------AATGTCTCCAAAGGCATTTATCAAACTTCCAATTTCAGAGTATCACCAGTTACTGAGGTTGTTAGATTTCCAAATATTACAAATCTCTGT------CCTTTTGACAAGGTTTTTAATGCCACACGCTTTCCTAGTGTCTATGCCTGGGAAAGAACTAAGATTTCTGAT---------------------------------------------------TGTGTTGCAGATTACACTGTTTTCTACAACTCAACTTCTTTTTCGACTTTCAACTGTTACGGAGTCTCTCCTTCTAAGTTGATTGATTTGTGTTTTACAAGTGTGTATGCAGACACATTTTTGATAAGATTTTCA------------------GAAGTCAGACAAGTGGCACCTGGTCAGACTGGTGTTATTGCAGACTAC---------------------------------------------------------------------AATTATAAACTACCTGACGAC---------TTTACAGGC---------------------------------TGTGTTATAGCTTGGAACACTGCTAAGCAA------------------GACGTCGGTAGCTATTTTTATAGGTCTCATCGCTCTAGCAAATTAAAA---------------CCCTTTGAAAGAGACCTTTCATCAGAAGAAAATGGTGTCCGTACACTCAGTACG------------TATGATTTTAATCAATATGTACCTCTT---------------------------GAG---TACCAAGCCACTAGAGTTGTT---------------------------------------------------GTTCTTTCATTTGAACTCCTCAATGCACCTGCTACAGTGTGT---------------------------GGACCAAAATTATCCACTTCATTGGTTAAG------AACCAGTGCGTCAACTTCAACTTTAATGGATTTAAAGGTACTGGTGTGTTGACCGAC---TCGTCTAAAACGTTTCAGTCTTTTCAGCAGTTTGGTCGGGATGCATCTGATTTTACTGATTCAGTGCGTGACCCGCAAACTTTACGGATACTTGACATTTCACCGTGCTCTTTTGGTGGTGTGAGTGTCATAACACCAGGAACTAACACTTCATCTGCAGTGGCTGTTCTTTACCAAGATGTAAACTGCACTGATGTTCCCACAACATTACATGCAGATCAATTAGCACCCTCTTGGCGTGTTTATACCACTGGACCCTATGTT---------TTCCAAACACAAGCAGGGTGCCTTATAGGAGCTGAACATGTCAAC------GCATCCTATCAGTGTGACATTCCAATT------------GGTGCTGGCATTTGTGCTAGCTATCATACAGCCTCACTTTTATGGAGTACAGGTCAA------------------AAATCTATTGTGGCCTATACTATGTCATTAGGTGCTGAAAATTCTGTGGCATATGCTAATAATTCC---ATTGCCATACCCACTAATTTTTCTATTAGTGTCACTACTGAAGTGATGCCTGTTTCTATGGCTAAAACATCTGTCGATTGTACTATGTACATCTGTGGTGATTCTTTAGAGTGCAGTAACCTACTGCTTCAGTATGGTAGCTTCTGTACCCAACTTAACCGTGCCCTTTCTGGCATTGCTGTAGAACAGGACAAAAACACCCAAGAGGTGTTTGCCCAGGTTAAACAGATGTATAAAACACCA---ACTATAAGAGATTTTGGTGGT---TTTAATTTCTCTCAGATATTA------------CCAGACCCTTTGAAACCTACTAAGCGTTCTTTTATAGAGGATTTGCTCTACAACAAAGTAACACTCGCGGATGCAGGCTTCATGAAACAG---TATGCAGACTGTTTG---------GGTGGTATTAACGCAAGAGATCTCATCTGTGCTCAAAAGTTTAATGGACTCACAGTCTTACCACCTTTGCTCACTGATGACATGATTGCAGCCTACACTGCTGCGCTCATTAGTGGCACTGCCACTGCAGGCTGGACTTTCGGTGCAGGTGCAGCCCTTCAAATACCTTTTGCTATGCAAATGGCTTATAGGTTTAACGGCATTGGAGTTACTCAAAATGTTCTCTACGAGAACCAAAAACAAATTGCCAATCAGTTCAATAAGGCTATTACTCAAATTCAAGAATCACTCACA------------------------------------------ACTACATCGACAGCATTGGGCAAGCTGCAAGACGTAGTCAACCAGAATGCTCAAGCATTAAATACACTTGTCAAACAACTTAGCTCCAATTTTGGTGCTATTTCAAGTGCTTTGAATGATATCCTCTCACGACTTGACAAAGTTGAGGCAGAGGTGCAAATTGACAGGTTGATTACAGGCAGATTACAAAGCCTCCAAACCTATGTAACACAACAATTAATCAGAGCTGCTGAAATCAGGACTTCTGCTAATCTTGCTGCTACTAAAATGTCTGAGTGTGTTCTTGGACAATCGAAAAGAGTTGATTTTTGTGGAAAAGGTTATCACCTTATGTCTTTCCCTCAATCCGCTCCACATGGTGTTGTGTTCTTACATGTCACTTATGTGCCATCACAAGAAAGGAACTTCACCACTGCCCCAGCAATTTGTCATGAAGGCAAA---------GCATACTTCCCTCGTGAAGGTGTGTTTGTATCTAATGGCAGT---------------------TCTTGGTTTATTACACAGAGGAATTTTTATTCACCACAGATAATCACAACAGACAATACATTTGTCGCCGGAAGTTGTGATGTCGTCATTGGAATCATTAATAATACAGTTTATGATCCTCTGCAACCTGAGCTT------GACTCATTTAAACAAGAGCTAGATAAGTACTTCAAAAATCATACATCACCTGATGTTGATCTTGGCGACATTTCAGGCATCAATGCTTCTGTCGTCGATATTCAGAAAGAAATTGAC------------------------------------------CGCCTCAATGAGGTTGCCAAAAATTTAAATGAATCACTCATTGACCTTCAAGAACTTGGCAAATATGAGCAATATATTAAATGGCCTTGGTATGTCTGGCTTGGCTTTATAGCAGGGTTAGTAGGATTATTTATGGCCATCATTCTTCTTTGTTACTTTACTAGCTGCTGTAGCTGCTGTAAAGGCATGTGC---TCCTGTGGTTCTTGCTGC---AGATTTGATGAA---GATGACTCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTACACA >PREDICT_PDF_2180_S_ARJ34226_1_2013_02_20_Uganda_Bat_Bat_coronavirus ---ATGACGTACTCAGTGTCTCTACTGATGTGCTTGTTAACTTTTATAGGGGCAAAC------------GCTAAAATTGTGTCGATACCTGGTGGTGTCGGTACTGGAGCTTGTCCCCAGGTTGATATGCAGCCCAGTTATTTTATAAAGCATAACTGGCCTGAACCTATTGACATGAATAAGGCAGACGGTGTCATC---TACCCAAATGGCCGCACTTAT------------------------------TCTAACATCACATTACAGACCACTAATCTGTTTCCTCGTAATGGTGATTTAGGCACTCAGTATGTCTATTCAGCATCTAATGAGAAAAGCCGCACTAGCAATGTGGCTTTTATT------------------AGTAATTATTCATACTATGGCAATCCCTTTGGCGACGGCATTGTCATACGTATAGGTCAAAATTCTAATAAGACTGGTAGTGTCATTGTGGGCACAGCACAGACTACTATTAAAAAGATCTACCCAGCT------CTTATGCTTGGTAGTTCTTTTGGCAATTTCTCTGTTAATAATAAGTCAGGTGCTTATTTTAATCACACCCTTCTTATCTTACCTAGCAAGTGTGGCACTGTATTTCAGGTGGCATACTGCCTTCTACAACCAAGGACTGACTCTTATTGTCCCGGTAATGCTAACTATGTT------AGCTATGCACTCATTGATTCTCCTACG---GATTGTACATCTGCGGATGAATCTAAACGTAGG------------------AATGGTCTTGAGGACATTAAAAAG---TACTTCAATTTGGTCAATTGTACCTATTTTGAAGAGTTTAATGTCACAGCTGACGAGCGTGCAGAGTGGTTTGGCATCACCCAAGATTCTCAGGGTGTGCACCTCTACACCTCTCGTAAAAATGGTTTCAATTCAAATAAT---------------CTCTTTTTATTTGCTTCTGTGCCCATT---------TATGATAAGATCAATTACTAC------------ACTGTAATTCCTCGC------------TCAATAATAACTCCTGCCAACCAGCGTTCTGCTTGGGCAGCATTTTATGTATATCCTTTACACCAACTTAGCTACTTGCTAAATTTTGATGTTAATGGT---------------TATATTACGCAAGCAGCAGAC---------------------TGTGGTTACAATGATTATACCCAGCTTGTCTGCTCGTATGGTGATTTT---------AATATGAAATCTGGTGTTTACTCTACTTCATATTATTCAGCCAAACCTGTA---GGTGCGTACTATGAAGCTCATGTTTACCCAGATTGC------AATTTTACTGATTTGTTCCGGGAAAATGCT---CCCACAATCATGCAATATAAGCGTCAAGTTTTTACGCGT---------------------------------------------------TGTAATTACAACCTCACACTACTGCTCTCTCTTGTGCAGGTGGATGAGTTTGTCTGCGATAAGATTACCCCTGAGGCTCTTGCAACAGGGTGTTATTCGTCTCTTACCGTCGATTGGTTTGCATTTCCGTATGCT------------------TGGAAGTCATACCTAGCTATAGGTTCAGCAGATCGCATTGTGCGGTTT---------------------------------------------------------------------AATTATAACCAGGATTATAGC---------AATCCCTCT---------------------------------TGTAGAATTCACTCCAAGGTGAATTCTTCAGTTGGCATTTCTTACTCTGGTTTATATAGTTATATTACTAATTGTAATTACGGCGGCTTCAACAAGGATGACGTTGTTAAGCCTGGTGGTCGTGCCAGTCAACCCTGTGTTACTGGCGCACTCAATTCACCTACTAACGGTCAAGTCTGGTCTTTTAATTTTGGTGGCGTCCCT---------------------------------TACAGAACCTCCCGCCTCACCTACACTGACCATCTTAAAAAC------------CCTCTAGATATGGTTTATGTCATCACTGTTAAGTATGAACCAGGCGCTGAAACTGTATGT---------------CCCAAACAAGTGCGTCCTGATTATAGTACCAATATTACTGGCTTATTAGGCTCTTGTATCAGTTATGACATTTATGGTATAACTGGTACTGGTGTTTTCCAGCTG---TGTAATGCAACTGGAATTCCTCAACAAAAGTTTGTCTATGACAAATTTGATAATATAATTGGCTTTCAC---TCTGATGACGGCAATTATTATTGTGTGGCACCTTGTGTCAGTGTGCCTGTTTCTGTTATATAT------GATGACAACACTAATCAATACGCCACATTGTTTGGCAGTGTTGCTTGTCAACATATATCTACAATGGCTGCTCAGTTTTCTCGTGAAACTCGTGCTTCCCTCGTTTCAAGAAATATGCAGAAT------CTTCTACAGACTTCTGTCGGTTGTGTCATGGGTTTCCATGAAACTAATGAC---ACCGTTGAAGACTGCAATCTTTCTTTG------------GGACAATCACTCTGCGCAATCCCACCTAACACCAACTTGAGGGTTGGTCGCTCCACC------------TTTGGATTAGGTTCTTTAGCCTACAACAGTCCATTGCGTGTTGATGCACTTAAC------TCCTCTGAGTTTAAGGTCTCCTTGCCTCTCAATTTTACATTTGGTGTTACTCAGGAATATATTGAAACTAGCATACAGAAGATTACAGTTGACTGTAAACAGTACGTGTGCAATGGTTTTGCTAAGTGTGAAAAGCTGCTCGAACAATACGGTCAGTTTTGCTCTAAAATTAACCAGGCTCTCCATGGCGCGAATCTTCGCCAGGATGACTTTGTTCGTAATCTGTTTGAGAGTGTTAAAACACCACAGACAGTTCCT---CTTACTACAGGTTTTGGAGGGGAGTTTAATCTTACT---CTTCTAGAGCCGCTTTCTGTTTCTACAGGTTCTTCTAATGCGCGTAGTGCTTTGGAAGAGCTTTTGTTTGACAAAGTCACTATAGCTGATCCTGGCTACATGCAAGGT---TATGATGACTGCATGCAA---CAGGGCCCTGCCTCAGCTCGTGATCTTATCTGTGCTCAATATGTTGCTGGCTACAAAGTGTTACCACCCCTTATGGATGTTAACATGGAAGCTGCATACACCTCTTCTTTGCTTGGTAGCATAGCTGGTGCTGGCTGGACTGCTGGTTTATCATCATTTGCTGCCATTCCATTTGCACAGAGTATATTTTACAGGTTAAATGGTGTTGGTATAACACAACAGGTTCTATCTGAGAATCAAAAGATTATTGCTAACAAGTTTAACCAAGCTCTTGGTGCCATGCAAACTGGTTTCACA------------------------------------------ACAACTAATGAAGCTTTTCAGAAAGTTCAAGATGCTGTGAACACTAATGCACAGGCTCTAGCTAAGTTGGCTAGTGAACTATCCAATACTTTTGGTGCTATTTCTTCTTCCATTGGTGACATCATTCAACGTCTTGATGTGCTTGAACAGGAAGTCCAAATAGACAGACTTATTAATGGCCGTCTGACTACACTCAACGCCTTTGTTGCTCAGCAGCTTGTTCGTTCTGAATCTGCTGCTCGTTCTGCACAATTGGCTAAGGATAAAGTCAATGAGTGTGTTAAATCACAATCCACTAGATCTGGATTTTGTGGTCAAGGCACTCATATAGTGTCCTTTGTTATTAACGCCCCTAATGGCCTCTACTTTATGCATGTTGGTTACCACCCTAGCCAACATATTGAGGTTGTTGCTGCCTATGGTCTTTGTGACGCGGCCAACCCCACTAATTGTATAGCCCCAGTTAATGGCTACTTTATTAAAAATCAAACT---ACTAGGGGTGTTGAT---GATTGGTCATATACAGGTTCTTCCTTTTATGCTCCAGAACCCATCACCACTCTTAATACTAGGTATGTCGCACCT---CAAGTGACATTCCAAAACATTTCTACTAACCTTCCTCCTCCTCTGTTGGGCAATTCCACTGGAACTGACTTCAAAGATGAGTTGGATGAATTTTTCAAGAATGTTAGCACCAGTATACCAAATTTTGGTGCTCTAACACAAATTAATACTACTTTATTGGATCTTTCCGATGAAATGCTA------------------------------------------GCTTTACAGCAAGTTGTCAAAGCGCTTAATGAGTCATATATTGACCTTAAAGAGCTCGGCAACTATACTTATTACAACAAATGGCCTTGGTACATTTGGTTGGGTTTCATTGCTGGACTTCTAGCCCTAGCCCTTTGTGTTTTCTTTATTCTTTGCTGCACTGGTTGCGGCACAAGTTGTTTAGGAAAACTT---AAATGTAATCGTTGTTGTGACAAATATGAAGAATACGAC---------------CTTGAGCCGCATAAAATTCATATTCAC >Vs_CoV_1_S_BBJ36008_1_NA_Japan_Bat_Bat_coronavirus ------------ATGACCCACTTAATGTTTCTACTGATGTTCTTGTTAACACCTATA------------AGAGGAGATGTTGATCTCGGTCCTGATTCCACTAGGGATACTTGTGATGAAGTAGTTGTTCAGGTTTCAGCC---TTTCAAAAAGACTGGCCTCAACCAATAAACCCTCTGTTTGCTGATGGTATCATA---TATCCAACAGGGCGGTCCTAT------------------------------TCTAATATTTCATTATCCTATCAAGGTTTGTTCCCAAGACAAGGTGATTTGGGCCGCCAATATATTTACTCCGTTACTCATGCTGGGGATTCTACATTGTATCCCCCTCAGGGTATAGGTAAGCATTTTATTTCCAATTATAGCGCTGAAACGCTGCCTTTTGGCAATGGTTTCGTCGTTAGAATTGGCTTTTCTGCTAATAAGACGGGCTCTCTTGTCATTTCACCGACGACGTCCAAAGTAATAAAGAAGATTTATCCT---GCCTTTATGCTTGGTACCGCCGTCACATCTTTTGCTCACGGTCAT---GCTGGCCGTTATTTAAACCACACACTCGTTATCTTACCTGAGTCGTGTGGCACGTCATTGACAGTCTTCTACTGTATTCTCGAACCACGCAACGGCACTAGGTGTCCTAATCACCAGGATTACACA------TCCTACGTGATTTGGGAAACACCTCATCTTGATTGCGGTAGCTCCGTTAATAGA------AAT------------------GCTACCTTAAATTCTTTTAAAGTG---TCCTTCAACTTGCGCCAGTGCAAGTTTATGCGCACTTATAATATTAGTGATGACGAAAACCAAGAATGGTTTGGTATCACCCAAAATGCGCAAGGTGTACACCTTTACTCCTCTAGAAAAGGGGACCTGTATGGTGGTAAC---------------ATGTTCCTCTTTGATACTCTACCTGTG---------TACGAGACTCTTAAGTATTAC------------ACAGTTATACCGCGC------------AGTCTACGTTCCAGACTCAATGAGAGACAGGCTTGGGCTGCTTTTTATGTGTACAGTCTCCACAAGCTAACATATTTGTTAGACTTTTCTGTGGATGGC---------------TATGTGCGCAGAGCTATAGAT---------------------TGTGGCTACGATGATGTGGCGCAACTCTTTTGTTCGTATGAGTCTTTC---------GATGTCGACTCTGGAGTTTACTCTGTGTCTTCATTCGAAGCCCAACCTCGC---GGTTACTTTGTGGAGCAGCCTCATAGTTCAGAGTGT------GACTTCTCAGCTATGTTTTCATCGCAGCCT---CCACAAGTTTATAATTTTAGCAGGTTAGTTTTTACTAAC---------------------------------------------------TGCAATTATAATTTAACGAGGCTTCTCTCGCTTTTTCAAGTTAGCGAATTCTCTTGTCATCAAGTGTCCCCTAGTGCTCTCGCATCCGGGTGCTATTCTTCATTAACCGTAGATTATTTTGCCTACCCTCTAAGT------------------ATGGCATCATACCTACGGCAAGGATCTACGGGCCCTATAGCCCAATTT---------------------------------------------------------------------AACTACAAGCAGGACTTTACT---------AATCCTACT---------------------------------TGTAGGATTTTAGCTGCCGTTCCCTCAAATGTTACAATTCCACTGCCGCAGAGTTACATGTGGCTAACGCAGTGCTATACTAACTCTCCTTCCAAT---------------TCTCATTATGTTGAGGCTGGT---TCTTACACGCCATGTCTTGGTTTAGCTAGC------------CGTGGTTTCAACACCTTTAATAGTATG---------------------------CACTATGATCCCGCCACTGGTCTTACTGCTACTGGTTCCTACCAATACATTTCTGAAGAAGCATTGGAAATGGCTTTTATCATATCAGTCCAGTATGGGACAGACTCTAATAGTGTCTGT------------------CCACTACAGGCTGTTCATAATGACACCAAAGTTGACGATAAACTTGGTCGTTGCATTGAATATTCACTCTACGGTGTTACAGGTAGAGGTGTTTTTCAAAAT---TGCACGCCTGTTGGTTTAAAGCAGCAGCGGTTTGTTTATGATGGGTTTGACAATCTTGTAGGTTACCAT---TCTGACAATGGTAATTACTACTGTGTCCGCCCATGCGTAAGTGTGCCAGTCTCTGTTATATAT------GACAAGGCTACTAATAATCATGCAACATTGTTTGGCAGCGTCGCTTGTGAACACGTTGACACAATGATGTCTCAGTTCTCCCGTATGACCCAGTCCAGGTTACGGGTCCGTAATATTGACGATGCTGGCCCAATGCAAACCTCCGTAGGTTGCGTTGTGGGGCTTGTCAATACATCGTTA---ATAGTTGACAACTGTCAGCTTCCATTA------------GGTCAATCTCTCTGTGCAGTACCTGCGACTACTATTCGTGCAGCCACTGGTACCACA------TCATCGCTGCAACTTGCCACTATCAACTTTACAGAGCCTCACATGCTCACTCCTATTAAC------TCTAGTAGGTTCATTGTTGAGATACCTACTAATTTCTCTTTTGGAGTTACGCAGGAATTCATTCAGACAACCATTCAGAAGGTTACTGTCGATTGTAAACAGTATGTCTGTAATGGTTTTGAAAAGTGTGAACAGCTGCTTCGTGAGTACGGCCAATTCTGCGCTAAAATTAATCAAGCTCTACATGGCGCTAACCTTCGCCAAGATGAGTCTGTTTCTAATCTTTTCTCAAATATAAAGACGCAGGCCACCCAGCCA---CTTGATGCTGGCTTAACCGGTGACTTTAATTTGACA---CTCCTTCAAGTTCCTAAAGTTGTCACTAGTCAGTACAGCTATAGGAGTGCTATAGAAGACTTGCTTTTTAACAAGGTCACCATTGCTGACCCTGGTTATATGCAAGGC---TATGACGAGTGCATGAAG---CAAGGCCCACCCTCAGCGCGTGACCTTATCTGCGCTCAGTTTGTGGCTGGTTACAAAGTGTTACCTCCTCTATATGACCCCAATATGGAGTCCATGTACACCACCTCCCTCACTGGGGCTATTCTTGGTGCTGCTTGGACGGCTGGAGCTTCGTCCTTTGCTGCCATTCCTTTTGCACAGAGTGTCTTTTACCGGATGAACGGCATTGGCATTACGCAGCAGGTTCTCTCTGAGAACCAGAAGCAAATTGCCAATAAGTTCAACCAGGCTTTAGGTGCTATGCAAACAGGGTTCACT------------------------------------------ACAACTAACCTAGCCTTTGCAAAGGTGCAGGAAGCCGTGAACGCTAATGCACAAGCTCTTTCTAAGTTGGCATCTGAACTTTCAAACACTTTTGGTGCCATCTCCTCATCTATCAGTGACATCCTTAAGAGGCTTGACGCTGTAGAACAAGAGGCGCAAATTGATAGGCTTATCAATGGTCGTCTCACATCACTTAACGCATTCGTTGCGCAGCAACTCGTGCGTTCTGAAACTGCTGCCAGATCCTCTCAATTGGCCGTTGATAAGGTCAATGAGTGTGTTAAGTCACAGTCCAAGAGAAATGGATTCTGTGGTTCTGGCAATCATATTGTCTCGTTCGTCTCTAATGCGCCGAATGGGCTTTACTTTTTCCATGTGGGTTATGTTCCCACTGCGCATATTAATGCAACTGCCGCTTATGGCCTTTGCAATACTGAGCTGCCGCCTAGGTGCATAGCTCCTATTGACGGCTATTTTGTTACTAATTCCTCCGCTACCCGCGATGCTGACCCTGAGTGGTACTACACGGGTAGTGCTTTTTATAATCCTGAACCGATCACTCTAGCTAACACGCGTTACGTGTCTAAG---GATACTAAGTACCAAGAACTCAATAATAAACTTCCTCCACCACTTCTCAGTAACCAGACTGATGAGAGTTTCAGAGATGAGCTGGAAGAGTTCTTTAAGAATGTTTCTTCTCAAGGTCCTAACTTTCAGGAGATATCAAAGATTAATGCCACTCTGTTGGATCTTTCTGATGAGATGAAA------------------------------------------GTTCTTAACGAGGTGGTCAAGCAACTTAACGAGTCATACATTGACCTTAAGGAGCTTGGTAATTATACCTATTACCAGAAATGGCCTTGGTACGTCTGGTTGGGCTTCATAGCAGGACTTGTGGCTCTAGCCCTGTGTGTCTTTTTCTTGCTCTGTTGTACTGGTTGCGGAACCAACTGTATGGGCAAGTTT---AAGTGTAACCGTTGCTGTGACAGTTATGATGACTATGAA---------------GTTGAGCCGCATAAGATTCATGTCCAT
>16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus ---MFIVFLISYTTFLIPY-------------TATTTCFSGPTTENK-LN IS-------SGSRGVY-YPDDIFR---------S-NVSVLVTGRFLRFNT TLTWYN------S---WN----------QAYSSPVLPFGHG--VYFST-- IDKSNVVRGW--------------IFGTTLDNTTQSA---------LLV- ------------NNGSAITIEVC-YFQFCDNPAFIISGGAQTN-TAIYIN LRN--CTYVDTLRDLPL-SFAEVDGGFKHLREFVFKNSDGFLHIYGAYQ- --PHDLDIGAPAALPAQFLPLKPLWKLPLGLNITNYKVV----TTLKP-- --------TNQAFQAAYIVGNLKHTTMMLSFNENG-----TMSNAID--- ----CSQDPLAELKCTLKQF---DVGKGIYQTSNFRVQPTVDVARFPNIT NVC--PFDKVFNATRFPSVYAWERTKISD-----------------CVAD YTVFYNSTSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR QVAPGQTGVIADY-----------------------NYKLPDD---FIG- ----------CVIAWNTAKQ------DVGSYFYRSHRSSKLK-----PFE RDLSSEENGVLTLST----YDFNQNVPL---------E-YQATRVV---- -------------VLSFELLNAPATVC---------GPKLSTPLVK--NQ CVNFNFNGLKGTGVLTD-SSKTFQSFQQFGRDASDFTDSVRDPQTLQILD ISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTIHADHLTHSWRVY TTGPHV---FQTQAGCLIGAEHVN--VSYQCDIPI----GAGICASYHTA SLLRSTGQ------KSIVAYTMSLGAENSVAYANNS-IAIPTNFSISVTT EVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQ DKNTQEVFAQVKQMYKTP-TIRDFGG-FNFSQIL----PDPLKPTKRSFI EDLLYNKVTLADAGFMKQ-YADCL---GGINARDLICAQKFNGLTVLPPL LTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN VLYENQKQIANQFNKAITQIQESLT--------------TTATALGKLQD VVNQNAQALNTLVKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGR LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM SFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHEGK---AYFPREGVFVS NGS-------SWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP LQPEL--DSFKQELDKYFKNHTSPDVDLGDISGINASVVDIQKEID---- ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL VGLFMAIILLCYFTSCCSCCKGMC-SCGSCC-RFDE-DDSEPVLKGVKLH YT >Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus -----MLILFVFLPFITAD-----------------TCLNFTNLAAPAYN IA------SSSRRGVY-YPDDIFR---------S-DFLHLVNDYFLPFGS NVTQFY------T---QG----------TNIDNPTLPFRDG--VYFAA-- TEKSNIVRGW--------------IFGSTLDSTSQSA---------IIL- ------------NNSTNLIVRVC-NFELCKVPLFVVFKSNNSQLSHLFSD SFN--CTFEYVSRAFSL-DIREQSGNFVDLREFVFRNRNGFLHIYEGYE- --AISIVRGLPAGFNV----LKPLLKIPFGLNVTSFKTF----LTVYR-- ----VAAGSISVASSAYFVGYLKPLTFMLSYDLNG-----TINNAVD--- ----CSQDPLAELKCTIKNF---NVSKGIYQTSNFRVSPTREVVRFPNIT NRC--PFDSIFNASRFPSVYAWERTKISD-----------------CVAD YTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR QVAPGETGVIADY-----------------------NYRLPDD---FTG- ----------CVIAWNTANQ------DVGSYFYRSHRSTKLK-----PFE RDLSSDENGVRTLST----YDFNPYVPL---------D-YQATRVV---- -------------VLSFELLNAPATVC---------GPKLSTELVK--NQ CVNFNFNGLKGTGVLSS-SSKRFQSFQQFGRDASDFTDSVRDPQTLEILD ITPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVY STGVNV---FQTQAGCLIGAEHVN--ASYECDIPI----GAGICASYHTA STLRSVGQ------KSIVAYTMSLGAENSIAYANNS-IAIPTNFSISVTT EVMPVSMAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGVALEQ DKNTQEVFAQVKQMYKTP-AIKDFGG-FNFSQIL----PDPSKPTKRSFI EDLLFNKVTLADAGFMKQ-YGECL---GDISARDLICAQKFNGLTVLPPL LTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN VLYENQKQIANQFNKAISQIQESLT--------------TTSTALGKLQD VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGR LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGRGYHLM SFPQAAPHGVVFLHVTYVPSQEKNFTTAPAICHEGK---AYFPREGVFVS NGT-------SWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDP LQPEL--DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEID---- ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL IAIVMATILLCCMTSCCSCLKGAC-SCGSCC-KFDE-DDSEPVLKGVKLH YT >Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus -----MLILFVFLPFITAD-----------------TCLNFTNLAAPAYN IA------SSSRRGVY-YPDDIFR---------S-DFLHLVNDYFLPFGS NVTQFY------T---QG----------TNIDNPTLPFRDG--VYFAA-- TEKSNIVRGW--------------IFGSTLDSTSQSA---------IIL- ------------NNSTNLIVRVC-NFELCKVPLFVVFKSNNSQLSHLFSD SFN--CTFEYVSRAFSL-DIREQSGNFVDLREFVFRNRNGFLHIYEGYE- --AISIVRGLPAGFNV----LKPLLKIPFGLNVTSFKTF----LTVYR-- ----VAAGSISVASSAYFVGYLKPLTFMLSYDLNG-----TINNAVD--- ----CSQDPLAELKCTIKNF---NVSKGIYQTSNFRVSPTREVVRFPNIT NRC--PFDSIFNASRFPSVYAWERTKISD-----------------CVAD YTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR QVAPGETGVIADY-----------------------NYRLPDD---FTG- ----------CVIAWNTANQ------DVGSYFYRSHRSTKLK-----PFE RDLSSDENGVRTLST----YDFNPYVPL---------D-YQATRVV---- -------------VLSFELLNAPATVC---------GPKLSTELVK--NQ CVNFNFNGLKGTGVLSS-SSKRFQSFQQFGRDASDFTDSVRDPQTLEILD ITPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVY STGVNV---FQTQAGCLIGAEHVN--ASYECDIPI----GAGICASYHTA STLRSVGQ------KSIVAYTMSLGAENSIAYANNS-IAIPTNFSISVTT EVMPVSMAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGVALEQ DKNTQEVFAQVKQMYKTP-AIKDFGG-FNFSQIL----PDPSKPTKRSFI EDLLFNKVTLADAGFMKQ-YGECL---GDISARDLICAQKFNGLTVLPPL LTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN VLYENQKQIANQFNKAISQIQESLT--------------TTSTALGKLQD VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGR LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGRGYHLM SFPQAAPHGVVFLHVTYVPSQEKNFTTAPAICHEGK---AYFPREGVFVS NGT-------SWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDP LQPEL--DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEID---- ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL IAIVMATILLCCMTSCCSCLKGAC-SCGSCC-KFDE-DDSEPVLKGVKLH YT >Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus MLRNKKFLSLFVFSVVLPCAY-----------SNTGTCSNTINRFMY-LK LGLPESVNDAYVSGYLPVRDNWTCS------AGF-WQYYNAHAIFMSYYS TAMDFAIGVGSSKSYN------------TKWGLYFWQKNNGYRAVFRICK W-DSKIEPSFQPSNQQARECLINKEFYMGFGHAKNQIFGVSWSGNRVTLH TLDKVVSFFVEGADAWDYASYRCANGYSCA--HQVVYTPVTLRITTVPEG IRS-YDLCTNCSGFPEH-VFAVLDGGEIPP-NFDFTN---WFYLTNASS- --PVSGRVVGVQPLQ-----LLCLWPIPALLGTATDITFDRNGTSDVRCN GFSSNATADAMRFSLNFTENGVFAKEGVITLKTVSNTFKFSCSNSSTYTS PY-VIPFGHIDQPYYCFTTFYINETTGTTATSFVGMLPPIVREFVITRLG DVYLNGYRIFSVGEVVSVNFNISSTDHRDFWTVAFVKDAEVMLDIEDTYI KQLLYCNNPVNVVKCQQLK-FVLEDGFYSYVPASEDSLPRTIVRLPRFMT HNFINVSVVVSFYFDDGKHDTPVGSDFYECATCAPKYYHVRFTDYWLDG- ----SNHTNVCVNTASFTTRLFTDYFGT-SGAVRIEIEPGTC-----PFG FD---TLNNYLAFGS----LCFSTV-P----------NGGCTMNIVTQGP YGQ----PHTFA-VLYVSYTDGDNIIGVPPSNIPAYGVADMSQVYL--DT CTTYTIYGMTGRGIITR-SNNTFITG-LYYTSNAGNLLAYKNSTTGIVYN IYPCQLAGQVAVI--SDN------IVGMASSTPNVSLDFNVTVVADSFYY LSNSAE-----------------------PCDQPVLTYAGIGICADGSIT NNTARRAA-----------------SDPISPVISGN-ISVPTNFTFSVQV EYIQLMLKPVTVDCSVYVCNGNPRCLQLLAQYASACRTIEQALQ-LSARL ESVEVNSMISISQQALDLGVIDNFNHDFNLTNVL------PASVGGRSAV EDLLFDKVVTSGLGTVDADYKECAS-RTANTVAEVGCVQYYNGIMVLPGV VDQSLLAQYSAALTGAMVLGGITAAAA----VPFSIAVQSRLNYLALQTD VLQRNQQQLANSFNAAMGNITEAFGRVNDAIEQTSHAISTVAQALDKVQN VVNDQGMALSQLTKQLASNFQAISSSIEDLYNRLDRVEADQQVDRLITGR LAALNAFVAQQLTKYTDVRASRQLAQEKINECVKSQSFRYGFCGNGTHVF SVVNAAPDGMMFFHSVLLPTAYMEVAAFSGLCVEGK-GFVLREVGNVLFE KDG-------RYFITARRMFEPRIPQTADFVQISGCDVVYLNVTRDELPT IIPDY--VDVNGTVEDILSKLPNRTSPELDLDIFNATYLNLTSEIADLTA RSESLKNTTLELKELIANINATLVDLEWLNRVETYIKWPWWVWLIIVLVL ILFTCLMLFCCCSTGCCGIFSCLASSCGACCDIRGTKLQRYEAIE--KVH VQ >Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus MLRNKKFLSLFVFSVVLPCAY-----------SNTGTCSSTINRFMY-LK LGLPESVNDAYVSGYLPVRDNWTCS------AGF-WQYYNAHAIFMSYYS TAMDFAIGVGSSKSYN------------TKWGLYFWQKNNGYRAVFRICK W-DSKIEPSFKPSNQQARECLINKEFYMGFGHALNQIFGVSWSGNRVTLH TLDKVVSFFVEGADTWDYASYRCANGYSCA--HQVVYTPVTLRITTVPQG IRS-YDLCTNCSGFPEH-VFAVLDGGEIPP-NFDFTN---WFYLTNASS- --PVSGRVVGVQPLQ-----LLCLWPIPALLGTATDITFDRNGTSDVRCN GFSSNATADAMRFSLNFTENGVFAKEGVITLKTVSNTFKFSCSNSSTYTR PY-VIPFGHIDQPYYCFTTFFTNETTGATATSFVGMLPPIVREFVITRLG DVYLNGYRIFSVGEVVSVNFNISSTDHRDFWTVAFVKNAEVMLDIEDTYI KQLLYCNNPVNVVKCQQLK-FVLEDGFYSYAPQSEDSLPRTIVRLPRFMT HQHINISVVVSFYFDDGQADTPVGSDFYACATCAPKYYKMVFADVDWTGI HGDILNVTGVCVNAASFTTKFRSSYLGADGVYVG--LEAGSC-----PFS FD---TLNNYLTFGS----LCFSTV-P----------NGGCTMNVVSKGP YGE----PHTFA-VLYVSYTDGDNVIGVPPYNIPPYGVSDMSIVYF--DV CTTYTIYGMTGRGIITP-SNNTFITG-LYYTSLAGDLLAYKNSTNGIVYN VYPCQLSGQVAVI--SDN------IVGMASSTPNVSLDFNVTVVADSFYY LSNSAE-----------------------PCDQPVLTYAGIGICADGSIT NNTARRAA-----------------SDPISPVISGN-ISVPTNFTFSVQV EYIQLMLKPVTVDCSVYVCNGNPRCLQLLAQYASACRTIEQALQ-LSARL ESVEVNSMISISQQALDLGVIDNFNHDFNLTNVL------PANVGGRSAV EDLLFDKVVTSGLGTVDADYKECAS-RTANWVAEVGCVQYYNGIMVLPGV VDQSLLAQYSAALTGAMVLGGITAAAA----VPFSIAVQSRLNYLALQTD VLQRNQQQLANSFNAAMGNITDAFGRVNDAIEQTSHAVSTVAQALNKVQT VVNDQGMALSQLTKQLASNFQAISSSIEDLYNRLDRVEADQQVDRLITGR LAALNAFVAQQLTKYTDVRASRQLAQEKINECVKSQSFRYGFCGNGTHVF SVVNAAPDGMMFFHSVLLPTAYMEVAAFSGLCVEGK-GFVLREVGNVLFE KDG-------SYLITARKMFEPRVPQTADFVQISGCDVVYLNVTRDELPT IIPDY--VDVNGTVEDILSKLPNRTSPEFNLDIFNATYLNLTSEIADLTA RSESLKNTTLELKELIANINATLVDLEWLNRVETYIKWPWWVWLIIVLVL ILFTCLMLFCCCSTGCCGIFSCLASSCGACCDIRGTKLQRYEAFE--KVH VQ >BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus ----MWAILLILPAVLA------RPSCI-KS-SVSLSSIEHNVTYQS-FV LS---------KVSCL-LPDPFIA----------YSGQTLKQSIYYADTT NVTVYPVTPYKKD--SKA----------TMYNTTQVLVGNG--LFVHTYM YREQDSSTY--------CQEPFGVVFGTTFEQDRIAI---------IMIV PGNLGSWPTVSKPTTIKVYIIVGSNATICAYPAFNRWGPAG---QFYADD AFV--NHGDSCFVNNTF-EIPLNTSRI----NLAFRFNDGNLLLYHSRW- --LPTSGLNLLEDTP-----LHFYMSVGVGANLPNAQFF----QSLSR-- SLDGSGDGKCFSAQNNLYIAPIVQRELLVAYSDAG-----IPTKVAD--- ----CSLNAGEELFCVTGTF---DPPTGVYPLSRYRAQLS-GSVHITQQL SHCALPYKDILDPPQ-PVV--WKRYTVAN-----------------CSFD FDVIVNNLPTYELKCYGVAPTRLAQMCYSGVTLDVMRINST------HFT NMLGNVPDVFSMY-----------------------NYVLPTD---FYG- ----------CVHAYYINST-NKRYTVAYQRGYSKVITPGGR-----QPY ND---YVRTLLNTPNE---IC------T---------R-ANCFGLV---- -------------VISLNPASGSHLVC---------PTNNDTDVVE--NQ CVKYNFYGYSGNGVLTK-SNLTIPDNKLFVASNTGSIIAVK--AQDTVYS ISPCVSVPVSVGY--DPNYEQ-ALLFNGLECNQRAVAVSIPASAY-WLRT VSDNQTAGVFDTPSGCVYNVINRTDITVNACDMPI----GNSLCLINATS TQARATSGDDTKSYLSLVNYDPTY-TSLTKVLTPVYWVSIPTNFTLAAGT EYIQTTSPKINIDCAKYLCGDSDKCLTVLLQYGTFCDDVNKALAEVSSVI DSTMVSLVSELTADVVRS-ENTAFDTTYNFTSLMGCLGSSCNTRNYRSAL SDLLYNKVKVADPGFMSS-YQKCIDSQWGGSVRDLICTQNFNGISVLPPI VSPAMQSLYTSLLVGAVASAGYTFGITSVGVIPFATQLQFRLNGLGVTTQ VLVQNQQLIANSFNNALTNIQKGFD--------------ATNLALSQMQS VINQHAQQLQTLVNQLGNSFGAISSSINEIFSRLDGLEANAQVDRIINGR TVVLNTYVTQLLLKASEVRSQAALARQKISECVKAQSLRNDFCGNGTHVF SVPQLAPNGVMFIHYTYQPTAYALVQTAAGLCYNGT---GYAPLSGMFVL PND-TN----LWHYTKMNFYNPVNITFENTQVLDSCAVNYSYVNYSVIEP TPPSS--YNFTEEFNKWYKNHSSYFNNTFNPGDFNFTGVNISEQLA---- ----------TLTDVVNQLNKSFIDLKQMNVYEQTIKWPWYVWLAMIAGL VGLVLAVIMLLCMTNCCSCFKGLC-SCRHC--SYDEIEDVYPAVRVHNKR TE >BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus -MILSLLLLVIAVCVNNNYAWLGLQRNAIPPSNQDGECGGDPGKLPN-LN LGLPPN-KTVFVSGYLPLHKGWVCPTHPLGGGGYGTTFNDIHAIYWSYHS TANAVELAVSSGNGSVTR----------D-WSLYVHHSNNQGYMYFKICR W-GAVYPLNLSPNHNRG-DCLVNRKFNFRFLHGANQVLGVTWSSNYVTLY GLNNTYRFYL--HNNWERATVRCHTKQSCA--FFPVENVTTLNITTNGEG LIESYDVCADCGGFPVH-VFPVLEHGYIPN-DFSFSN---WFMLSNTST- --FLQGKLVSTQPLK-----LMCLWPVPSLLANDEKIFFN---ASGATCN GYQFDGVADAIRFSLNFSSDQVFNGVNNIVFDVEGGTFEFFCTNDTSVNP TYRYVPFGQLTEIYRCFVET---TAENGTHTTFVGILPPVVREIVVSRLG AIYINGYRLISLPVIESIVFNVTSKVGSDFWTVAFAQDVEVLLELNATNI VDILYCESPINKLKCQQLT-FSLDDGFYPASSAYTEYTPRSYVALPYHAT HTEVVLGVHLSLY-----------------------TKHSATL---NGG- ------NDTICVNTTQFTTVLNAS---VYTG-ARGDVVNVNC-----PFT WA---SLNDYLSFGT----ICFSFE-PL---------PGGCTMSIN-VVN LGY----YTPFA-TLYVGYTRGHGITG---VSQKVGGIFDPSFITL--DT CTEYTVYGITGKGVITS-LNKTIVAG-LYYTSTSGQLLGFKNSTTGEVFA VRPCDLASQVAVY--QND------IIGAMTASRNSSFGFANVSELSNFYY HSNGHL-----------------------GCEEPVLIYGKMGICSDGSLT EVNNKDAE-----------------QQPVSPIATAN-VTVPVNFTVSVQV EYLQMYMQPVSVDCNTYVCSGNVHCLRLLTQYASACRNIESSLQ-LSARL ESLEVNSAITVSERAASLANITNFEN-YNLSVLL------P-NLNGRSAM EDLLFNKVVTNGLGTVDQDYKQCIKDKGVGDVADVACAQYYNGVMVLPGV VDDTKMSLYTASLVGGMVLAGFTAGAA----IPFSLAVQARLNYVALQTD VLQRNQQILAESFNSALSNITEAFTEVNEAIKNTADAINTVATALGKVQS VVNQQGEALAQLTKQLSSNFQAISSSIEDIYLRLDKLAADAQVDRLISGR LAGLNAFVTQTLTKYTEVRASRQLALQKVNECVKSQSSRYGFCGNGTHLF SVVNAAPNGIMFFHTVLIPSSYTTVQAWAGVCVNGDVGLILRDVRNTLFY LDS-------KYYITTRDMYQPRTPVQSDFVRISNCSVSYVNITSEQLGD IIPDY--LDVNKTLNDLQQSRPNYTVPDLGLDQYNTTILNLTSEIAMLQN KSDSLIESTVKLHKLIEQLNQTYVDLEWLNRLESYVKWPWWVWLAILLAL IFTSFILLYCCCSTGCCGCTSCLA----DCRGQRLQ------RYEVEKVH IQ >BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus ----MLFLAVYAAELLVLITQIPAVFSYG---GERFTCSPNYASLPN-LN LGLPPN-STVLVSGYLPRPGDWVC------YTGT-TTHDNIRGVFWSYYS HGSAVAIGISNKDQTTTP----------DQWALFAHHSNNGGQFYLRICK WLNGG-NLDWATESSRG-LCIVNRKFRFQFSHAAGQVIGVTWSSNVVTFY G-SRSYRYYL--TNNWNRVDVKCVNYPTCI--INPVRNITTFNVTTNAQG LFQSYTVCDDCNGFPQH-VFAVLDGGYIPS-EFGLDN---WYVLSNTST- --VLDGRVLTNQPLL-----VACLWPVPSLLSNDNPIHFNMSLNTGVNCN GYSEVREVSHLRFALNFTNQQVLNGVHNIDLLGDTFNFTFTCTNNSDITK GERFVPFGFLDNVYRCFVYF---DVGNGTVNKFVGILPPVVKEIVISKFG TVYINGVNMATLPPVNSVIFNVTSTVGSDFWTVGFTDLADVMIDINATRI VDLLYCDTPINKLKCQQLS-FSLDDGFYTTTNVYKQAVPRTYVALPYHAT HSAINITAEVSVN-----------------------SNDDRFL---INGL ------NGTFCVNTTQFTV--ITHFTQYTG--MRVAIENLDC-----PFT LD---SLNNFLSFGS----ICFSTY-AV---------GGGCRMRLD-KVL IST----PTPWR-ILNIVYTDGDRTTG---VTKASGGIFDPSELYV--GV CTDYTIYGISGRGIINQ-LNTTIIAG-LYYTSPAGQLLGFKNATTGDIYG VRPCALSSQAAVY--QNE------IIGVMTASANESFGFQNVTETPKFFY HSNGNS-----------------------TCTEPVLTYGSVGVCPDGTLI MVQTRSGN-----------------VNPVSPIVSGN-ITIPLNFTVSVQV EYLQMYLQPVSVDCNMYVCGGNPHCLRLMSQYASACRTIEESLQ-LGARL ESTEVANTISVSSQAVQLANITNFDS-YNVSVLL------P-RANGRSFI EDLLFDKVVTSGLGTVDQDYKQCVNEWGIGEVADLSCAQYYNGIMVLPGV VDANMMTLYTASLTGAMVFGGITASAS----IPFSLAVQSRLNYVALQTD VLNRNQEILAQSFNSALGNITAAFSEVNHAFQETSDAINTVAQALGKVQT VVNEQGQALSQLTRQLASNFQAISNSIEDIYNRLDGLTADAQVDRLITGR IGALNAFVAQTLTKYTEVRASRQLAIQKINECVKSQSARFGFCGNGTHLF SIANAAPNGIMLFHTVLLPSEYTTVQAWAGICIDNNVGLILRDFKTTLFF SD--------KYYVTPRDMFEPRTPVQADFVRIANCSVNYLNISSSELGT IIPDY--IDVNKTLEELEQQRPNYTLPELDIDRFNNTYLNLSAEIAELQR KSESLQNSTIQLQELIERINSSYVDLELLKRIETYVKWPWYVWLAIILVM SLFSFLMLYCCCMTGCCGCCSCLTSCCFDCRGKRLQ------QYEVEKVH IQ >BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus ----MLSLAVYFAELLVIISYLPDLVT-----GDLNGCADGHNRLPN-LN LGLPPN-STVFVSGYLPRKNGWECPTINNQYGGS-TNYENVHGIFWSYHS TAQRFELGVSNKDQLVNT----------NRWALYVYQNNNEGVLKLRICK WLRGQYSLQWLHGARHG-QCAVDRAFNFRFVHAENQVLGVTWSSNYVTFY GINGSYRYYI--PNDWFRVSVKCENKYVCA--IYPVYNQTTLNITTNAKG LIKEYSVCESCNGFPAH-VFPVLEGGKIPA-DFDFTN---WFYLSNTST- --LVAGRVVGIQPLR-----LLCLWPVPSTTANDDKIYFN---TTGANCN GFVGEGVADALRFSLNFTSNQVLNGVHNIILESTSSKFTFTCRNDSESTF YR--VPFGETGQVYYCFIFT---EAGNQSYNTFVGILPPVLKEIVISRYG SIYLNGVKLFSLPTLESVIFNVSSNVGSDFWTIAYAQDAQVMVDLNATSI TDLLYCDTPLNRLKCQQLS-YALEDGFYPTTNIYTKDIPRSYVALPYHAT HAVLNITAYIGD------------------------KKDDRIQ---INGF ------NDSFCVNTTQFTTN----FVQTDSGIIKAELKNGDC-----PFT FD---SINNYLTFDS----ICFSIE-PI---------GGGCTMNIV-RTW FGQ----SVPWR-TLYVSYTKGSRITG---VKTPNTGVFDPSTFVE--DV CTDYTIYGMSGRGVISR-SNASYIAG-LYYTAISGQLLGFKNATTGETFV VVPCDLSSQAAVI--GDK------VVGVMTSITNSSFEFVKSIETPNFYY LTNATA-----------------------NCTSPVITYGKLGVCEDGSIA EVKVNTHV-----------------QTPVSPISTGN-ITVPSNFTVSVQV EYLQMYMRPVSVDCAMYVCNGNPHCLRLLTQYASACRTIEDALQ-LSARL ESIEVNSVISVSEDALELANISNFDH-YNMSALL------P-KKNGRSFI EDLLFNKVVTNGLGTVDQDYKKCMKDKGFGEASDIACVQYYNGIMVLPGV VDDSKMALYTAALTGGMLLAAFTAGAS----IPFSLAVQSRLNYVALQTD VLQKNQQILATSFNNAMSNITVAFTEVNQAIKETSDAINTVAKALGKVQS VVNEQGQALSQLTRQLASNFQAISSSIEDIYNRLDSLAADAQVDRLITGR LGALNAFVTQTLTRYTDARASRQLAIQKINECVKSQSMRYGFCGNGTHLF SIANAAPNGVMLFHTVLIPTEFVTVEAWSGVCVDGTHGLILRDVRTTLFQ QGS-------TYYVTTRDMFEPRTPVAADFVRIANCSVTYVNITADSLGE IIPDY--IDVNKTLEEL--GRPNFTLPDFNLDQFNNTYLNLSAEIALLNA KSESLYNTTQRLEKSIENINNSYIDLELLNRLESYVKWPWYVWLAIFLAL ILFSFLMLYCCMATGCCGCCSCLSNSCFDCGGRRLQ------RYEVEKVH IQ >BtCoV_Rh_YN2012_Rs4259_S_QBP43279_1_2013_04_17_China_Unknown_Bat_coronavirus ----MLSLAIYIAEILAFLQ-LPDLTTGAP--NKDGDCGDGYNRLPN-LN LGLPPN-STVFVSGYLPQKTGWVCP--ENKEAGA-TSYEGVHGVFWSYYA TGQDVEIGVSNFRQLNNT----------NRWALYVHQKNNDHVLHFRICK WLAGTYTPQSRPWSRYG-QCAVDKRISFTFEHQGNQVLGVTWSSNYVTFY GISKSYRYFL--KNDWYRVTVKCLNKYACA--LYPVYNQTTLNITTNARG LIQSYSVCDSCNGFPAH-VFPVLEGGKIPA-DFDFTN---WFYLTNSST- --LVAGRVVGIQPLK-----LLCLWPVPSITANDDKIYFN---TTGANCN GFVGEGVADALRFSLNFTANQILNGVHNIILEGTEAKFTFTCRNDSESTL FR--VPFGVTGQVYYCFVFT---ESRNQSYNTFVGILPPILKEIVISRYG SIYLNGVKLFSLPVLQSVIFNVSSKVGSDFWTVAYAQDAQVMVDLNATSI TDLLYCDTPLNRLKCQQLS-YALEDGFYPTTNIYTRDIPRSYVALPYHAT HMVLNITAYIGD------------------------KKDDRIQ---INGF ------NDSFCVNTTQFTTN----FVQTDSGIIKAELKNGDC-----PFT FD---SINNYLTFDS----ICFSIE-PI---------GGGCTMNIV-RTW FGQ----SVPWR-TLYVSYTKGSRITG---VKTPNTGVFDPSTFVE--DV CTDYTIYGMSGRGVISR-SNASYIAG-LYYTAISGQLLGFKNATTGETFV VVPCDLSSQAAVI--GDK------VVGVMTSITNSSFEFVKSIETPNFYY LTNATA-----------------------NCTSPVITYGKLGVCEDGSIA EVKVNTHV-----------------QTPVSPISTGN-ITVPSNFTVSVQV EYLQMYMRPVSVDCAMYVCNGNPHCLRLLTQYASACRTIEDALQ-LSARL ESIEVNSVISVSEDALELANISNFDH-YNMSALL------P-KKNGRSFI EDLLFNKVVTNGLGTVDQDYKKCMKDKGFGEASDIACVQYYNGIMVLPGV VDDSKMALYTAALTGGMLLAAFTAGAS----IPFSLAVQSRLNYVALQTD VLQKNQQILATSFNNAMSNITVAFTEVNQAIKETSDAINTVAKALGKVQS VVNEQGQALSQLTRQLASNFQAISSSIEDIYNRLDSLAADAQVDRLITGR LGALNAFVTQTLTRYTDARASRQLAIQKINECVKSQSMRYGFCGNGTHLF SIANAAPNGVMLFHTVLIPTEFVTVEAWSGVCVDGTHGLILRDVRTTLFQ QGS-------TYYVTTRDMFEPRTPVAADFVRIANCSVTYVNITADSLGE IIPDY--IDVNKTLEEL--GRPNFTLPDFNLDQFNNTYLNLSAEIALLNA KSESLYNTTQRLEKLIENINNSYIDLELLNRLESYVKWPWYVWLAIFLAL ILFSFLMLYCCMATGCCGCCSCLSNSCFDCGGRRLQ------RYEVEKVH IQ >CMR66_NA_AWV67056_1_2013_12_Cameroon_Bat_Bat_coronavirus ----MLLTVVLSLALIACDASATRPECFANS-NFQLYPRNHTVNITS-LS VN---------VANLL-LPDPYIA----------YSGQTLRQNLFMADLS RTIIYPITPPAKDS-TGG----------YIYNTTILPVASG--LFVHTWM YRQESTSRTY-------CQEPFGVAFGDTFIQDRIAI---------VIIA PDNLGSWNQVSYRNVTTVHLVVCSNATLCINPGFNRWGPAG---NIIASN ALV--DHSNSCFVNNSF-NVSISTSRI----NLAFLFKDGDLLIYHSNW- --LPKGSFDFNQSFP-----LQYFMTLPVGGNLPRAQFF----QSIVRQG GTNNGADDRCVDFNISLHIAHLVNRDLLVSYFNNG-----SVANAAD--- ----CAESASEELYCVTGSF---QPPTGVYPLSRYRAQVD-GFVRVTQRG DYCQPPYADLLEPPQ-PVV--WRRFMLYN-----------------CAFD FSVVIDNLPTHQLQCYGISPKRLASMCYSSVTIDVMRINAT------HLN NLLNRVPDSFSLY-----------------------NYAVPDN---FYG- ----------CLHAFYLNST-T-----AYAVANRFPIKPGGR-----QSN RD---YIATVLNAAH----YT------T---------F-SYIFGLA---- -------------VITLKPASGNKLVC---------PIANDTDIIT--ER CVQYSLYGYTGTGVLSKNTSLTVPNGKVFTASSTGAIIGVF--INGTMYS ITPCVTVPVSVGY--HANFER-VLLFNGLSCSQRSRAVSRPASTL-WNFS VSDESA---IDTLSGCVVNAILHNDTTVSTCSMPL----GNSLCLINDTT VAIAHAVG---LPKLYLVNYDPLYDNNSATPITPVYWVKIPTNFTLTATD EFIQTNAPKVTIDCARYLCGDSSRCLNILLHYGTFCDDINKALAKVNTIL DSALLSLSKELSINTRDEIQSFAFGGDYNFTGLMGCLGPNCGATTYRSAL SDLLYDKVKITDPGFMQS-YQKCIDSQWGGSVRDLLCTQTYNGIAVLPPI VSPAMQALYTSLLVGAVASSGYTFGITSAGVIPFATQLQFRLNGIGVTTQ VLVENQKLIASSFNNALVNIQKGFT--------------ETSIALSKMQD VINQHAAQLQTLVTQLGNSFGAISSSINEIFSRLEGLAANAEVDRLINGR MMVLNTYVTQLLLQASEAKAQNALAVQKISECVKAQSLRNDFCGNGTHVL SIPQLAPNGVLFIHYAYTPTDYALVQTSAGLCYNGT---GYAPLRGMFVL PNN-TN----MWHFTSMQFYNPVNISYSNTQILTSCSINYTSVNYSVLQP SAPSD--YDFQKEFDKFYKNLSTSFNNTFNPNDFNFSMVDVTAQIS---- ----------SLHQVVDQLNQSFIDLKKLNVYEKTIKWPWYIWLAMIAGI VGLVLAVIMLMCMTNCCSCFKGMC-DCRRCCGSYDSYDDVYPAVRVNKKR TV >CMR704_P12_NA_AWV67040_1_2013_12_Cameroon_Bat_Bat_coronavirus ----MVVLLFVMFSLVVAD----RPNCYLP--QYSYTISPATITNTSYFN VN---------PISIV-VPEFSVA----------RTNLVVRQRLQVAAYD -FTKIPITPPHRS----------------IFNNTYFRVGDG--ILVNTHM YHRTNIATNLG-SSFYGCQEPFGAAFGNTFVNEPITL---------VMFY AGNVGSWSSLVTQQQANITIVSCDNATLCANPFFLRWGPGVIR-SFTISN AFQ--CHGNYTFYDTKLVNFTVSTARY----NLAFTFADGDIFMY--YA- --ALGDSLNLPTAYP-----LQPYLRIPAGFKPDVVQFF----QAITRP- -NGESAEVACASSTVSWYVSRLYYKELLVGYDSYS-----SIVNVSF--- ----CSSDAESELQCLLGTF---APANGVYSLSNFRSSPT-DNVRITNSA SSCSVPYSVLSRPPL-PFV--WKRYAISN-----------------CKFD FQALLSHLPTFQLRCFGISPTKLATMCFGTVTLDIMLVNVT------HYN NLLNDVPDDFSLY-----------------------NYQLPRN---FYG- ----------CLHSYYLPND-T-----AFSYTVASRIRYPSW-----VHS ITPGGRQPVGPFLDS----LQSSSK-PC---------T-GSCLGLA---- -------------VISLSIASANKLVC---------PVGNDTDIVP--DT CVNYNIYGYQGTGVISR-SNYTLPSSKVFSLSSSGELTVFA--VGSSFYQ LSPCAFAPISAAF--YKGYTT-SLLFNNLPCSNRHRAVVEPVSAY-WRRS VADNNT---FDTTAGCIFNAYNLTSIVVNQCDLPI----GDSYCLQPSLI KGFEATLS--------LVTYNPL--ADSLTPITPVYQVSVPTNFTLVAST EYIQTYASKISIDCAKYLCGDSSQCRTVLLQYGTFCNDVNVALTRVFTLL DNSLVDTFSSLKSTAPVQ---LAYTGDFNFTSLVGCIGTDCDSKSHRSAL SDLLFSKVSVADPGFMQS-YQQCLDAQWGGNIRDLLCTQTFNGISVLPPI VSPSMQALYTTALVGGIAASGFTFGVSSAAVIPFATQLQFRLNGLGVTTN VLMENQQLIANAFNKALVSIQEGFT--------------ATNQALNKIQT VVNNNALQLQVLVQQLGNTFGAISASVNEIFSRLDLLEANAEVDRLISGR MVVLNTYVTQLLIQASELRSQAELAKQKMSECVKSQSLRNDFCGNGTHVL SIPQLAPNGMLFIHYSYQPTKYAQVYTTAGLCFNGT---GFVPRDGLFVR ENNESQ----VWYFTKASFYNPVNLSYENTHLLDTCGVNYTTVNNSVLNP IEPPN--YNFQEEFDKYFKNQSSQFNITFDSSQFNVSIVNLNEQMA---- ----------ALDSVVKSLNESFIDLKKLGVYTQQPNTPWYAWLGMIAGL VGLALAVFMLCCMTNCCSGFRGIC-SCKQC--QYDDYADVYPAVRVSGKR TV >CMR900_NA_AWV67048_1_2013_12_Cameroon_Bat_Bat_coronavirus ----MVVLLFAILSIALAD----RPLCTINTGNYVLNPIQANITYTVVNS IN---------PVSLV-VPEFSIA----------RTNLVVRQRLYVA-AT NFTRIPITPPGRA---------------VIFNNTYFDAEDG--FFVNTHM YHTNNIATSPNKPNFYGCQEPFGVAFGNTFENEPITL---------VMVY AGNIGSWTNTVTQTSANITIVSCDNATLCSNPLYLRWGPGGLP-GYVIKD AFH--CHGDYTFYDSKIINFSVDSSRY----NFAFSFADGDIFMY--YA- --PLGDSQNVAKAFP-----LQPYLRIPAGFKPKRAQFF----QAIIRK- -TAEDAEFQCSRYTTSWYVSYLKYHELLVGYDANS-----IISNVST--- ----CSFDAESELQCLLGTF---TPANGVYSLSNFRSSPV-DTVRITNSA KACSVPYNLLETPPL-PFV--WKRHSISN-----------------CKFD FQALLSHLPSFQLRCYGISPTKLSSMCFGTVSLDVMLVNVT------HYN NLLNDVPDDFSLY-----------------------NYQLPRN---FYG- ----------CLHSYYLPNS-T-----TFNYIVASRSQSPSW-----VYN ISPGGRQPPSSFLNT----LPGSAK-PC---------Q-GSCLGLA---- -------------VISLSVASANKLVC---------PVGNDTDIVT--GN CVNYNIYGYQGTGVITT-SNYTLPSTKVFSLSASGELTVFS--VGSSFYQ LSPCAFAPISAAF--YKGYTT-SLLFNNLPCSGRSRAVVEPVSDY-WRAS VVNNST---FDTSAGCIFNAINSTSIVVNQCDLPI----GDSYCLQPSTI SRQGSTLL--------LVTYDPL--SDTLTPITPVYEISVPTNFTLVAST EYIQTYASKISIDCAKYLCGDSSQCRTVLLQYGTFCNDVNVALTRVFTLL DNSLVDTFSSLKSTAPAQ---LAYTGDFNFTSLVGCVGTDCDSKSYRSAL SDLLFNKVSVADPGFMQS-YQKCLDSQWGGNIRDLLCTQTFNGISVLPPI VSPSMQALYTTALVGGIAASGFTFGVSSAAVIPFATQLQFRLNGLGVTTN VLMENQQLIANAFNKALVSIQEGFT--------------ATNQALNKIQT VVNNNALQLQVLVQQLGNTFGAISASVNEIFSRLDLLEANAEVDRLISGR MVVLNTYVTQLLIQASELRSQAELAKQKMSECVKAQSTRNDFCGNGTHVF TIPQLAPNGMLFIHYSYQPTNYVQVYTTAGLCFNGT---GFVPRDGLFVR ENNASQ----LWYFTKASFYNPVNLSYENTRLLDTCGVNYTTVNNTVLNP IEPPN--YDFQEEFDKYFKNQSSHFNITFDSSQFNVSIVNLNEQMA---- ----------ALDSVVKSLNESFIDLKKLGVYTQTIKWPWYAWLGMIAGL VGLALAVFMLCCMTNCCSGFRGIC-SCRQC--QYDDYADVYPAVRVSGKR TV >JPDB144_S_ANA96039_1_2012_12_China_Bat_Bat_coronavirus ----MTRLMCLLMSLLIFVRGCEAQFVDMSPASNNSECLDSQVDAAAFSK LMWPYPIDPSKVDGII-YPVGRTY----------SNITLSYTGLFPLQGD LGTQYLYSVSHAVGHDGDPTTAYI----SNYSLLVNAFDNGFVVRIGAAA NSTGTIVISPSVQTKIKKAYP-AFILGSSLTNTSAGL--PLYANYSLTII PDGCGTVLHAFYCILQPRTQNRCPGNGGYK--AYFVYETIHNDCVPAINK --N------ASLNSFKT-FFDLVNCTFFDSWDITADEVKEWFGITQDTQG VHLYSSRKGDLYGGN-----MFRFATLPV---YDAIKYY----TVIPR-- --SFRAKANRRESWAAFYVYKLHQLTYLLDFSVDG-----YIRRTID--- ----CGHDDLSQLHCSYTSF---EVDTGVYSVSSYEASAT-GTFIEQPNA TEC--DFSPMLKGVA-PQVYNFKRLVFSN-----------------CNYN LTKLLSLFAVDEFSCNGISPDAIARGCYSTLTVDYFAYPLS------MKS YIRPGSAGNIPLY-----------------------NYKQSFA---NPT- ----------CRVMASVPANVTITKPEAYGYISKCSRLTGDYQHIETPLY INPG-EYSICRDFAP----WGFSEDGQVFKRTLTQFEGGGLLVGVGTRVP MTA----NLEMGFVISVQYGTDTNSVC------PMLDLGESSTITNRLGK CVDYSLYGVTGRGVFQN-CSAVGVKQQRFVYDSFDNLVGYY-SDDGNYYC VRPCVSVPVSVIY--DKDTNLHATLFGSVACEHVTTMMSQFSRLTQSNLR RRDSNA--PLQTAVGCVVGLSNNSL-VVSDCRLPL----GQSLCAVPPVT SFRRRSAS---EFQLAVLNYTSPIVVTPIN--SSGFTAAIPTNFSFSVTQ EYVETSIQKVTVDCKQYVCNGFSRCEKLLVEYGQFCSKINQALHGANLRQ DESVYSLYSNIKTTSTQT-LEYGLNGDFNLT-LLQVPQIGGSSSGYRSAI EDLLFDKVTIADPGYMQG-YDDCMK-QGPQSARDLICAQYVSGYKVLPPL YDPNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSMFYRLNGVGITQQ VLSENQKLIANKFNQALGAMQTGFT--------------TSNQAFSKVQD AVNANAQALSKLASELSNTFGAISSSISDILARLDTVEQDAQIDRLINGR LTSLNAFVSQQLVRSETAARSAQLASDKVNECVKSQSKRNGFCGSGTHIV SFVANAPNGFYFFHVGYVPTNFTNVTAAYGLCNNNNPLLCIAPIDGYFIT NQTTTYSIDTEWYYTGSSFFKPEPITQVNSRYVSS-DVKFEKLENNLPPP LLENSTDVDFKDELEEFFKNVTSHGPNFAEISKINTTLLDLSDEMA---- ----------ILQEVVKQLNDSYIDLKELGNYTYYNKWPWYIWLGFIAGL VALLLCVFFLLCCTGCGTSCLGKM-KCRNCCDSYED-------FDVEKIH VH >JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus ---MFIVFLISYTTFLIPY-------------TATTTCFSGPTIENK-LN IS-------SGSRGVY-YPDDIFR---------S-NVSVLVTGRFLRFNT TLTWYN------S---WN----------QAYSSPVLPFGHG--VYFST-- IDKSNVVRGW--------------IFGTTLDNTTQSA---------LLV- ------------NNGSAITIEVC-YFQFCDNPAFIISGGAQTN-TAIYIN LRN--CTYVDTLRDLPL-SFEDVDGGFKHLREFVFKNSDGFLHIYGAYQ- --PYDLAIGATAALPAQFLPLKPLWKLPLGLNITNYKVV----TTLKP-- --------TNQAFQAAYIVGNLKHTTMMLSFNENG-----TMSNAID--- ----CSQDPLAELKCTLKQF---DVGKGIYQTSNFRVQPTVDVARFPNIT NVC--PFDKVFNATRFPSVYAWERTKISD-----------------CVAD YTVFYNSTSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR QVAPGQTGVIADY-----------------------NYKLPDD---FIG- ----------CVIAWNTAKQ------DVGSYFYRSHRSSKLK-----PFE RDLSSEENGVLTLST----YDFNQNVPL---------E-YQATRVV---- -------------VLSFELLNAPATVC---------GPKLSTPLVK--NQ CVNFNFNGLKGTGVLTD-SSKTFQSFQQFGRDASDFTDSVRDPQTLQILD ISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTIHADHLTHSWRVY TTGPYV---FQTQAGCLIGAEHVN--ASYQCDIPI----GAGICASYHTA SLLRSTGQ------KSIVAYTMSLGAENSVAYANNS-IAIPTNFSISVTT EVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQ DKNTQEVFAQVKQMYKTP-TIRDFGG-FNFSQIL----PDPLKPTKRSFI EDLLYNKVTLADAGFMKQ-YADCL---GGINARDLICAQKFNGLTVLPPL LTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN VLYENQKQIANQFNKAITQIQESLT--------------TTATALGKLQD VVNQNAQALNTLVKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGR LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM SFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHEGK---AYFPREGVFVS NGS-------SWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP LQPEL--DSFKQELDKYFKNHTSPDVDLGDISGINASVVDIQKEID---- ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL VGLFMAIILLCYFTSCCSCCKGMC-SCGSCC-RFDE-DDSEPVLKGVKLH YT >Jiyuan_84_NA_ARI44809_1_2012_China_Bat_Bat_coronavirus ----MKILIFAFLVTLV---------------KAQEGCGVINLKTQPTLT QV------SSSRRGVY-YNDDIFR---------S-DVLHLTQDYFLPFHS NLTQYFSLNIESD---KI----------VYFDNPILKFGDG--VYFAA-- TEKSNVIRGW--------------VFGSTFDNTTQSA---------IIV- ------------NNSTHIIIRVC-YFNLCKDPMYTVSAGTQVS-SWVYQS AFN--CTYDRVKKSFQL-DTSPKTGNFTDLREFVFKNRDGFFTVYQTYT- --PVNLLRGLPSGLSV----LKPILKLPFGINITSFRVV----MAMFS-- ----KTTSNYVPESAAYYVGNLKQSTFMLSFNQNG-----TIVDAVD--- ----CSQDPLAELKCTTKSF---NVSKGIYQTSNFRVSPVTEVVRFPNIT NLC--PFDKVFNATRFPSVYAWERTKISD-----------------CVAD YTVFYNSTSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFS------EVR QVAPGQTGVIADY-----------------------NYKLPDD---FTG- ----------CVIAWNTAKQ------DVGSYFYRSHRSSKLK-----PFE RDLSSEENGVRTLST----YDFNQYVPL---------E-YQATRVV---- -------------VLSFELLNAPATVC---------GPKLSTSLVK--NQ CVNFNFNGFKGTGVLTD-SSKTFQSFQQFGRDASDFTDSVRDPQTLRILD ISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTLHADQLAPSWRVY TTGPYV---FQTQAGCLIGAEHVN--ASYQCDIPI----GAGICASYHTA SLLWSTGQ------KSIVAYTMSLGAENSVAYANNS-IAIPTNFSISVTT EVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQ DKNTQEVFAQVKQMYKTP-TIRDFGG-FNFSQIL----PDPLKPTKRSFI EDLLYNKVTLADAGFMKQ-YADCL---GGINARDLICAQKFNGLTVLPPL LTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQN VLYENQKQIANQFNKAITQIQESLT--------------TTSTALGKLQD VVNQNAQALNTLVKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGR LQSLQTYVTQQLIRAAEIRTSANLAATKMSECVLGQSKRVDFCGKGYHLM SFPQSAPHGVVFLHVTYVPSQERNFTTAPAICHEGK---AYFPREGVFVS NGS-------SWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP LQPEL--DSFKQELDKYFKNHTSPDVDLGDISGINASVVDIQKEID---- ----------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGL VGLFMAIILLCYFTSCCSCCKGMC-SCGSCC-RFDE-DDSEPVLKGVKLH YT >PREDICT_PDF_2180_S_ARJ34226_1_2013_02_20_Uganda_Bat_Bat_coronavirus -MTYSVSLLMCLLTFIGAN----AKIVSIPGGVGTGACPQVDMQPSYFIK HNWPEPIDMNKADGVI-YPNGRTY----------SNITLQTTNLFPRNGD LGTQYVYSASNEKSRTSNVAFI------SNYSYYGNPFGDGIVIRIGQNS NKTGSVIVGTAQTTIKKIYPA--LMLGSSFGNFSVNNKSGAYFNHTLLIL PSKCGTVFQVAYCLLQPRTDSYCPGNANYV--SYALIDSPT-DCTSADES KRR------NGLEDIKK-YFNLVNCTYFEEFNVTADERAEWFGITQDSQG VHLYTSRKNGFNSNN-----LFLFASVPI---YDKINYY----TVIPR-- --SIITPANQRSAWAAFYVYPLHQLSYLLNFDVNG-----YITQAAD--- ----CGYNDYTQLVCSYGDF---NMKSGVYSTSYYSAKPV-GAYYEAHVY PDC--NFTDLFRENA-PTIMQYKRQVFTR-----------------CNYN LTLLLSLVQVDEFVCDKITPEALATGCYSSLTVDWFAFPYA------WKS YLAIGSADRIVRF-----------------------NYNQDYS---NPS- ----------CRIHSKVNSSVGISYSGLYSYITNCNYGGFNKDDVVKPGG RASQPCVTGALNSPTNGQVWSFNFGGVP-----------YRTSRLTYTDH LKN----PLDMVYVITVKYEPGAETVC-----PKQVRPDYSTNITGLLGS CISYDIYGITGTGVFQL-CNATGIPQQKFVYDKFDNIIGFH-SDDGNYYC VAPCVSVPVSVIY--DDNTNQYATLFGSVACQHISTMAAQFSRETRASLV SRNMQN--LLQTSVGCVMGFHETND-TVEDCNLSL----GQSLCAIPPNT NLRVGRST----FGLGSLAYNSPLRVDALN--SSEFKVSLPLNFTFGVTQ EYIETSIQKITVDCKQYVCNGFAKCEKLLEQYGQFCSKINQALHGANLRQ DDFVRNLFESVKTPQTVP-LTTGFGGEFNLT-LLEPLSVSTGSSNARSAL EELLFDKVTIADPGYMQG-YDDCMQ-QGPASARDLICAQYVAGYKVLPPL MDVNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSIFYRLNGVGITQQ VLSENQKIIANKFNQALGAMQTGFT--------------TTNEAFQKVQD AVNTNAQALAKLASELSNTFGAISSSIGDIIQRLDVLEQEVQIDRLINGR LTTLNAFVAQQLVRSESAARSAQLAKDKVNECVKSQSTRSGFCGQGTHIV SFVINAPNGLYFMHVGYHPSQHIEVVAAYGLCDAANPTNCIAPVNGYFIK NQT-TRGVD-DWSYTGSSFYAPEPITTLNTRYVAP-QVTFQNISTNLPPP LLGNSTGTDFKDELDEFFKNVSTSIPNFGALTQINTTLLDLSDEML---- ----------ALQQVVKALNESYIDLKELGNYTYYNKWPWYIWLGFIAGL LALALCVFFILCCTGCGTSCLGKL-KCNRCCDKYEEYD-----LEPHKIH IH >Vs_CoV_1_S_BBJ36008_1_NA_Japan_Bat_Bat_coronavirus ----MTHLMFLLMFLLTPI----RGDVDLGPDSTRDTCDEVVVQVSA-FQ KDWPQPINPLFADGII-YPTGRSY----------SNISLSYQGLFPRQGD LGRQYIYSVTHAGDSTLYPPQGIGKHFISNYSAETLPFGNGFVVRIGFSA NKTGSLVISPTTSKVIKKIYP-AFMLGTAVTSFAHGH-AGRYLNHTLVIL PESCGTSLTVFYCILEPRNGTRCPNHQDYT--SYVIWETPHLDCGSSVNR --N------ATLNSFKV-SFNLRQCKFMRTYNISDDENQEWFGITQNAQG VHLYSSRKGDLYGGN-----MFLFDTLPV---YETLKYY----TVIPR-- --SLRSRLNERQAWAAFYVYSLHKLTYLLDFSVDG-----YVRRAID--- ----CGYDDVAQLFCSYESF---DVDSGVYSVSSFEAQPR-GYFVEQPHS SEC--DFSAMFSSQP-PQVYNFSRLVFTN-----------------CNYN LTRLLSLFQVSEFSCHQVSPSALASGCYSSLTVDYFAYPLS------MAS YLRQGSTGPIAQF-----------------------NYKQDFT---NPT- ----------CRILAAVPSNVTIPLPQSYMWLTQCYTNSPSN-----SHY VEAG-SYTPCLGLAS----RGFNTFNSM---------HYDPATGLTATGS YQYISEEALEMAFIISVQYGTDSNSVC------PLQAVHNDTKVDDKLGR CIEYSLYGVTGRGVFQN-CTPVGLKQQRFVYDGFDNLVGYH-SDNGNYYC VRPCVSVPVSVIY--DKATNNHATLFGSVACEHVDTMMSQFSRMTQSRLR VRNIDDAGPMQTSVGCVVGLVNTSL-IVDNCQLPL----GQSLCAVPATT IRAATGTT--SSLQLATINFTEPHMLTPIN--SSRFIVEIPTNFSFGVTQ EFIQTTIQKVTVDCKQYVCNGFEKCEQLLREYGQFCAKINQALHGANLRQ DESVSNLFSNIKTQATQP-LDAGLTGDFNLT-LLQVPKVVTSQYSYRSAI EDLLFNKVTIADPGYMQG-YDECMK-QGPPSARDLICAQFVAGYKVLPPL YDPNMESMYTTSLTGAILGAAWTAGASSFAAIPFAQSVFYRMNGIGITQQ VLSENQKQIANKFNQALGAMQTGFT--------------TTNLAFAKVQE AVNANAQALSKLASELSNTFGAISSSISDILKRLDAVEQEAQIDRLINGR LTSLNAFVAQQLVRSETAARSSQLAVDKVNECVKSQSKRNGFCGSGNHIV SFVSNAPNGLYFFHVGYVPTAHINATAAYGLCNTELPPRCIAPIDGYFVT NSSATRDADPEWYYTGSAFYNPEPITLANTRYVSK-DTKYQELNNKLPPP LLSNQTDESFRDELEEFFKNVSSQGPNFQEISKINATLLDLSDEMK---- ----------VLNEVVKQLNESYIDLKELGNYTYYQKWPWYVWLGFIAGL VALALCVFFLLCCTGCGTNCMGKF-KCNRCCDSYDDYE-----VEPHKIH VH
Reading sequence file /data//pss_subsets/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result/original_alignment/fubar/fasta/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result.1
Found 18 sequences of length 4656
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 52.0%
Found 3640 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0% 5.4% 10.7% 15.8% 20.8% 25.6% 30.3% 34.8% 39.1% 43.3% 47.4% 51.3% 55.1% 58.7% 62.1% 65.4% 68.6% 71.6% 74.5% 77.2% 79.7% 82.1% 84.4% 86.5% 88.4% 90.2% 91.8% 93.3% 94.7% 95.9% 96.9% 97.8% 98.5% 99.1% 99.6% 99.9%100.0%100.0%
Using a window size of 80 with k as 63
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 1948 polymorphic sites
**p-Value(s)**
----------
NSS: 0.00e+00 (1000 permutations)
Max Chi^2: 0.00e+00 (1000 permutations)
PHI (Permutation): 0.00e+00 (1000 permutations)
PHI (Normal): 0.00e+00
#NEXUS
[ID: 2313936250]
begin taxa;
dimensions ntax=18;
taxlabels
16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus
BtCoV_Rh_YN2012_Rs4259_S_QBP43279_1_2013_04_17_China_Unknown_Bat_coronavirus
CMR66_NA_AWV67056_1_2013_12_Cameroon_Bat_Bat_coronavirus
CMR704_P12_NA_AWV67040_1_2013_12_Cameroon_Bat_Bat_coronavirus
CMR900_NA_AWV67048_1_2013_12_Cameroon_Bat_Bat_coronavirus
JPDB144_S_ANA96039_1_2012_12_China_Bat_Bat_coronavirus
JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus
Jiyuan_84_NA_ARI44809_1_2012_China_Bat_Bat_coronavirus
PREDICT_PDF_2180_S_ARJ34226_1_2013_02_20_Uganda_Bat_Bat_coronavirus
Vs_CoV_1_S_BBJ36008_1_NA_Japan_Bat_Bat_coronavirus
Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus
Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus
Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus
Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus
BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus
BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus
BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus
BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus
;
end;
begin trees;
translate
1 16BO133_S_ASO66810_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus,
2 BtCoV_Rh_YN2012_Rs4259_S_QBP43279_1_2013_04_17_China_Unknown_Bat_coronavirus,
3 CMR66_NA_AWV67056_1_2013_12_Cameroon_Bat_Bat_coronavirus,
4 CMR704_P12_NA_AWV67040_1_2013_12_Cameroon_Bat_Bat_coronavirus,
5 CMR900_NA_AWV67048_1_2013_12_Cameroon_Bat_Bat_coronavirus,
6 JPDB144_S_ANA96039_1_2012_12_China_Bat_Bat_coronavirus,
7 JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus,
8 Jiyuan_84_NA_ARI44809_1_2012_China_Bat_Bat_coronavirus,
9 PREDICT_PDF_2180_S_ARJ34226_1_2013_02_20_Uganda_Bat_Bat_coronavirus,
10 Vs_CoV_1_S_BBJ36008_1_NA_Japan_Bat_Bat_coronavirus,
11 Anlong_103_NA_ARI44799_1_2013_China_Bat_Bat_coronavirus,
12 Anlong_112_NA_ARI44804_1_2013_China_Bat_Bat_coronavirus,
13 Anlong_43_NA_ARI44789_1_2013_China_Bat_Bat_coronavirus,
14 Anlong_57_NA_ARI44794_1_2013_China_Bat_Bat_coronavirus,
15 BtCoV92_S_QEH60463_1_2015_Singapore_Bat_Bat_coronavirus,
16 BtCoV_Rh_YN2012_Ra13591_S_QBP43290_1_2013_06_01_China_Unknown_Bat_coronavirus,
17 BtCoV_Rh_YN2012_Rs3376_S_QBP43256_1_2012_05_19_China_Unknown_Bat_coronavirus,
18 BtCoV_Rh_YN2012_Rs4125_S_QBP43268_1_2012_09_16_China_Unknown_Bat_coronavirus
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:7.828729e-03,7:3.326499e-03,((((((((2:5.134093e-02,18:4.495789e-02)1.000:3.533014e-01,16:4.980425e-01)0.997:1.231069e-01,17:4.283675e-01)0.954:1.919067e-01,(13:6.799726e-02,14:9.152471e-02)1.000:7.152875e-01)1.000:2.303904e+00,((6:3.239045e-01,10:3.935521e-01)1.000:1.709069e-01,9:4.741382e-01)1.000:9.139290e-01)1.000:5.166849e-01,((3:5.041339e-01,15:4.393481e-01)1.000:3.208858e-01,(4:1.896201e-01,5:9.637534e-02)1.000:4.525983e-01)1.000:8.386049e-01)1.000:1.185075e+00,(11:3.470525e-04,12:3.675776e-04)1.000:2.190349e-01)0.890:6.978256e-02,8:5.825786e-02)1.000:9.677984e-02);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:7.828729e-03,7:3.326499e-03,((((((((2:5.134093e-02,18:4.495789e-02):3.533014e-01,16:4.980425e-01):1.231069e-01,17:4.283675e-01):1.919067e-01,(13:6.799726e-02,14:9.152471e-02):7.152875e-01):2.303904e+00,((6:3.239045e-01,10:3.935521e-01):1.709069e-01,9:4.741382e-01):9.139290e-01):5.166849e-01,((3:5.041339e-01,15:4.393481e-01):3.208858e-01,(4:1.896201e-01,5:9.637534e-02):4.525983e-01):8.386049e-01):1.185075e+00,(11:3.470525e-04,12:3.675776e-04):2.190349e-01):6.978256e-02,8:5.825786e-02):9.677984e-02);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -38297.29 -38315.68
2 -38297.57 -38314.14
--------------------------------------
TOTAL -38297.42 -38315.19
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 12.189746 0.239712 11.303160 13.249910 12.172940 1027.40 1036.94 1.002
r(A<->C){all} 0.183159 0.000062 0.167276 0.198417 0.183099 376.61 706.55 1.000
r(A<->G){all} 0.273996 0.000087 0.255160 0.291219 0.273827 502.00 508.10 1.002
r(A<->T){all} 0.095238 0.000021 0.085959 0.103832 0.095221 703.00 812.53 1.000
r(C<->G){all} 0.120400 0.000051 0.106770 0.134523 0.120397 719.08 822.91 1.000
r(C<->T){all} 0.268801 0.000075 0.251500 0.285372 0.268645 516.51 569.04 1.002
r(G<->T){all} 0.058406 0.000015 0.050413 0.065507 0.058439 904.98 961.84 1.000
pi(A){all} 0.247913 0.000016 0.239245 0.254959 0.247983 494.71 504.91 1.000
pi(C){all} 0.190849 0.000011 0.184871 0.197486 0.190765 683.48 695.42 1.000
pi(G){all} 0.196018 0.000015 0.188050 0.203113 0.195908 627.26 645.07 1.000
pi(T){all} 0.365220 0.000024 0.355768 0.374912 0.365189 530.56 556.09 1.001
alpha{1,2} 0.525910 0.000551 0.479090 0.568085 0.525167 1066.28 1197.92 1.001
alpha{3} 4.578533 0.378930 3.458001 5.782537 4.526577 1355.44 1428.22 1.000
pinvar{all} 0.003815 0.000007 0.000002 0.008887 0.003352 1280.72 1338.79 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
[2J[H /HYPHY 2.3.14.20190214beta(MP) for Linux on x86_64\ ***************** TYPES OF STANDARD ANALYSES ***************** (1) Selection Analyses (2) Evolutionary Hypothesis Testing (3) Relative evolutionary rate inference (4) Coevolutionary analysis (5) Basic Analyses (6) Codon Selection Analyses (7) Compartmentalization (8) Data File Tools (9) Miscellaneous (10) Model Comparison (11) Kernel Analysis Tools (12) Molecular Clock (13) Phylogeny Reconstruction (14) Positive Selection (15) Recombination (16) Selection/Recombination (17) Relative Rate (18) Relative Ratio (19) Substitution Rates Please select type of analyses you want to list (or press ENTER to process custom batch file):[2J[H***************** FILES IN 'Selection Analyses' ***************** (1) [MEME] Test for episodic site-level selection using MEME (Mixed Effects Model of Evolution). (2) [FEL] Test for pervasive site-level selection using FEL (Fixed Effects Likelihood). (3) [SLAC] Test for pervasive site-level selection using SLAC (Single Likelihood Ancestor Counting). (4) [FUBAR] Test for pervasive site-level selection using FUBAR (Fast Unconstrained Bayesian AppRoximation for inferring selection). (5) [BUSTED] Test for episodic gene-wide selection using BUSTED (Branch-site Unrestricted Statistical Test of Episodic Diversification). (6) [aBSREL] Test for lineage-specific evolution using the branch-site method aBS-REL (Adaptive Branch-Site Random Effects Likelihood). (7) [RELAX] Test for relaxation of selection pressure along a specified set of test branches using RELAX (a random effects test of selection relaxation). Please select the analysis you would like to perform (or press ENTER to return to the list of analysis types): Analysis Description -------------------- Perform a Fast Unbiased AppRoximate Bayesian (FUBAR) analysis of a coding sequence alignment to determine whether some sites have been subject to pervasive purifying or diversifying selection. v2.1 introduces two more methods for estimating the posterior distribution of grid weights: collapsed Gibbs MCMC (faster) and 0-th order Variation Bayes approximation (fastest). Please note that a FUBAR analysis generates a cache and a results JSON file in the same directory as directory as the original alignment. HyPhy needs to have write privileges to this directory. For example if the original file is in /home/sergei/FUBAR/data/pol.nex then at the end of a FUBAR run, there will also exist FUBAR-generated files /home/sergei/FUBAR/data/pol.nex.FUBAR.json, /home/sergei/FUBAR/data/pol.nex.fubrar.cache. They also provide checkpointing so that a partially completed analysis can be restarted. - __Requirements__: in-frame codon alignment (possibly partitioned) and a phylogenetic tree (one per partition) - __Citation__: FUBAR: a fast, unconstrained bayesian approximation for inferring selection (2013), Mol Biol Evol. 30(5):1196-205 - __Written by__: Sergei L Kosakovsky Pond - __Contact Information__: spond@temple.edu - __Analysis Version__: 2.1 ####Choose Genetic Code 1. [**Universal**] Universal code. (Genebank transl_table=1). 2. [**Vertebrate mtDNA**] Vertebrate mitochondrial DNA code. (Genebank transl_table=2). 3. [**Yeast mtDNA**] Yeast mitochondrial DNA code. (Genebank transl_table=3). 4. [**Mold/Protozoan mtDNA**] Mold, Protozoan and Coelenterate mitochondrial DNA and the Mycloplasma/Spiroplasma code. (Genebank transl_table=4). 5. [**Invertebrate mtDNA**] Invertebrate mitochondrial DNA code. (Genebank transl_table=5). 6. [**Ciliate Nuclear**] Ciliate, Dasycladacean and Hexamita Nuclear code. (Genebank transl_table=6). 7. [**Echinoderm mtDNA**] Echinoderm mitochondrial DNA code. (Genebank transl_table=9). 8. [**Euplotid Nuclear**] Euplotid Nuclear code. (Genebank transl_table=10). 9. [**Alt. Yeast Nuclear**] Alternative Yeast Nuclear code. (Genebank transl_table=12). 10. [**Ascidian mtDNA**] Ascidian mitochondrial DNA code. (Genebank transl_table=13). 11. [**Flatworm mtDNA**] Flatworm mitochondrial DNA code. (Genebank transl_table=14). 12. [**Blepharisma Nuclear**] Blepharisma Nuclear code. (Genebank transl_table=15). 13. [**Chlorophycean mtDNA**] Chlorophycean Mitochondrial Code (transl_table=16). 14. [**Trematode mtDNA**] Trematode Mitochondrial Code (transl_table=21). 15. [**Scenedesmus obliquus mtDNA**] Scenedesmus obliquus mitochondrial Code (transl_table=22). 16. [**Thraustochytrium mtDNA**] Thraustochytrium Mitochondrial Code (transl_table=23). 17. [**Pterobranchia mtDNA**] Pterobranchia Mitochondrial Code (transl_table=24). 18. [**SR1 and Gracilibacteria**] Candidate Division SR1 and Gracilibacteria Code (transl_table=25). 19. [**Pachysolen Nuclear**] Pachysolen tannophilus Nuclear Code (transl_table=26). >Please choose an option (or press q to cancel selection): >Select a coding sequence alignment file (`/usr/local/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/`) >A tree was found in the data file: `(C1,C15,((((((((C10,C9),C7),C8),(C4,C5)),((C14,C18),C17)),((C11,C6),(C12,C13))),(C2,C3)),C16))` >Would you like to use it (y/n)? >Loaded a multiple sequence alignment with **18** sequences, **1552** codons, and **1** partitions from `/data//pss_subsets/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result/original_alignment/fubar/results/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result.1/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result.1.fna` > FUBAR will write cache and result files to _/data//pss_subsets/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result/original_alignment/fubar/results/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result.1/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result.1.fna.FUBAR.cache_ and _/data//pss_subsets/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result/original_alignment/fubar/results/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result.1/JTMC15_S_ANA96027_1_2013_08_China_Bat_Bat_coronavirus.result.1.fna.FUBAR.json_, respectively > Number of grid points per dimension (total number is D^2) (permissible range = [5,50], default value = 20, integer): ####Posterior estimation method 1. [**Metropolis-Hastings**] Full Metropolis-Hastings MCMC algorithm (slowest, original 2013 paper implementation) 2. [**Collapsed Gibbs**] Collapsed Gibbs sampler (intermediate speed) 3. [**Variational Bayes**] 0-th order Variational Bayes approximations (fastest, recommended default) >Please choose an option (or press q to cancel selection):> The concentration parameter of the Dirichlet prior (permissible range = [0.001,1], default value = 0.5): ### Obtaining branch lengths and nucleotide substitution biases under the nucleotide GTR model * Log(L) = -58853.15, AIC-c = 117788.34 (41 estimated parameters) * Tree length (expected substitutions/site) for partition 1 : 5.228 ### Computing the phylogenetic likelihood function on the grid * Determining appropriate tree scaling based on the best score from a 20 x 20 rate grid * Best scaling achieved for * synonymous rate = 2.815 * non-synonymous rate = 0.643 * Computing conditional site likelihoods on a 20 x 20 rate grid ### Running an iterative zeroth order variational Bayes procedure to estimate the posterior mean of rate weights * Using the following settings * Dirichlet alpha : 0.5 ### Tabulating site-level results | Codon | Partition | alpha | beta |Posterior prob for positive selection| |:--------------:|:--------------:|:--------------:|:--------------:|:-----------------------------------:| | 26 | 1 | 4.409 | 26.599 | Pos. posterior = 0.9049 | | 35 | 1 | 1.011 | 14.852 | Pos. posterior = 0.9743 | ---- ## FUBAR inferred 2 sites subject to diversifying positive selection at posterior probability >= 0.9 Of these, 0.12 are expected to be false positives (95% confidence interval of 0-1 )
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
