--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -2344.89 -2383.32
2 -2343.70 -2375.58
--------------------------------------
TOTAL -2344.13 -2382.62
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.456464 0.001869 0.374098 0.538351 0.454159 932.54 1216.77 1.000
r(A<->C){all} 0.120457 0.000604 0.071226 0.167809 0.119123 883.42 885.56 1.000
r(A<->G){all} 0.282372 0.001399 0.210266 0.355270 0.281822 671.60 732.72 1.000
r(A<->T){all} 0.046773 0.000148 0.025730 0.070824 0.045955 1035.11 1054.67 1.000
r(C<->G){all} 0.058909 0.000497 0.021058 0.104925 0.056914 608.59 698.02 1.000
r(C<->T){all} 0.438620 0.001654 0.361310 0.517211 0.438733 447.61 556.22 1.000
r(G<->T){all} 0.052870 0.000210 0.025903 0.080814 0.051682 940.61 962.90 1.001
pi(A){all} 0.282581 0.000236 0.254312 0.313861 0.282287 1100.89 1147.25 1.001
pi(C){all} 0.170744 0.000163 0.144672 0.194130 0.170376 1069.96 1080.78 1.001
pi(G){all} 0.190468 0.000180 0.164190 0.215014 0.190072 841.81 956.63 1.000
pi(T){all} 0.356207 0.000270 0.324715 0.388956 0.356727 988.81 1039.46 1.001
alpha{1,2} 0.746113 0.261338 0.176924 1.816016 0.597796 638.85 753.36 1.001
alpha{3} 1.391806 0.849106 0.296931 3.343927 1.121170 804.38 836.07 1.001
pinvar{all} 0.323031 0.018332 0.037497 0.537164 0.338109 471.33 524.44 1.002
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
-- Starting log on Wed Nov 09 22:46:41 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Wed Nov 09 22:49:02 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Wed Nov 09 22:46:41 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Thu Nov 10 06:28:07 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result/gapped_alignment/fubar,A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 90 taxa and 753 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C52
Taxon 2 -> C67
Taxon 3 -> C66
Taxon 4 -> C12
Taxon 5 -> C10
Taxon 6 -> C69
Taxon 7 -> C70
Taxon 8 -> C68
Taxon 9 -> C17
Taxon 10 -> C14
Taxon 11 -> C76
Taxon 12 -> C59
Taxon 13 -> C75
Taxon 14 -> C20
Taxon 15 -> C22
Taxon 16 -> C78
Taxon 17 -> C79
Taxon 18 -> C77
Taxon 19 -> C26
Taxon 20 -> C23
Taxon 21 -> C85
Taxon 22 -> C84
Taxon 23 -> C58
Taxon 24 -> C30
Taxon 25 -> C28
Taxon 26 -> C87
Taxon 27 -> C88
Taxon 28 -> C34
Taxon 29 -> C32
Taxon 30 -> C35
Taxon 31 -> C38
Taxon 32 -> C39
Taxon 33 -> C40
Taxon 34 -> C3
Taxon 35 -> C31
Taxon 36 -> C19
Taxon 37 -> C13
Taxon 38 -> C48
Taxon 39 -> C4
Taxon 40 -> C43
Taxon 41 -> C24
Taxon 42 -> C44
Taxon 43 -> C89
Taxon 44 -> C55
Taxon 45 -> C60
Taxon 46 -> C61
Taxon 47 -> C16
Taxon 48 -> C54
Taxon 49 -> C47
Taxon 50 -> C45
Taxon 51 -> C74
Taxon 52 -> C42
Taxon 53 -> C82
Taxon 54 -> C50
Taxon 55 -> C37
Taxon 56 -> C6
Taxon 57 -> C73
Taxon 58 -> C15
Taxon 59 -> C86
Taxon 60 -> C49
Taxon 61 -> C63
Taxon 62 -> C1
Taxon 63 -> C41
Taxon 64 -> C27
Taxon 65 -> C21
Taxon 66 -> C71
Taxon 67 -> C62
Taxon 68 -> C46
Taxon 69 -> C9
Taxon 70 -> C29
Taxon 71 -> C80
Taxon 72 -> C83
Taxon 73 -> C18
Taxon 74 -> C11
Taxon 75 -> C81
Taxon 76 -> C57
Taxon 77 -> C92
Taxon 78 -> C5
Taxon 79 -> C33
Taxon 80 -> C56
Taxon 81 -> C7
Taxon 82 -> C2
Taxon 83 -> C64
Taxon 84 -> C91
Taxon 85 -> C72
Taxon 86 -> C51
Taxon 87 -> C65
Taxon 88 -> C53
Taxon 89 -> C8
Taxon 90 -> C25
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1668061689
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 815781939
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 8097819206
Seed = 57530312
Swapseed = 1668061689
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 108 unique site patterns
Division 2 has 83 unique site patterns
Division 3 has 154 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -16397.589272 -- 149.597508
Chain 2 -- -17923.463412 -- 149.597508
Chain 3 -- -17613.873948 -- 149.597508
Chain 4 -- -17101.839159 -- 149.597508
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -17209.405831 -- 149.597508
Chain 2 -- -16715.032324 -- 149.597508
Chain 3 -- -16198.198120 -- 149.597508
Chain 4 -- -16381.429261 -- 149.597508
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-16397.589] (-17923.463) (-17613.874) (-17101.839) * [-17209.406] (-16715.032) (-16198.198) (-16381.429)
1000 -- [-7336.357] (-8807.502) (-9464.071) (-7541.573) * (-8720.075) [-8266.032] (-8739.918) (-8276.496) -- 1:23:15
2000 -- (-6006.513) (-6526.572) (-6873.482) [-5631.441] * [-6067.124] (-6288.628) (-6520.789) (-6065.289) -- 1:31:29
3000 -- (-5276.164) (-5501.562) (-5193.555) [-5078.585] * (-5199.125) (-5119.816) (-5621.041) [-5164.407] -- 1:23:05
4000 -- (-4984.018) (-4913.031) [-4777.027] (-4828.664) * (-4856.087) [-4692.889] (-5147.112) (-4803.959) -- 1:23:00
5000 -- (-4889.883) (-4651.473) [-4643.231] (-4674.764) * (-4745.223) [-4624.644] (-4986.716) (-4681.866) -- 1:22:55
Average standard deviation of split frequencies: 0.096067
6000 -- (-4727.097) [-4581.260] (-4608.454) (-4586.360) * (-4715.514) [-4593.500] (-4941.549) (-4604.738) -- 1:22:50
7000 -- (-4646.356) (-4555.113) [-4548.579] (-4550.493) * (-4576.452) (-4577.604) (-4828.721) [-4537.558] -- 1:20:23
8000 -- (-4591.161) (-4509.589) [-4509.500] (-4552.658) * (-4539.312) (-4559.600) (-4764.196) [-4511.761] -- 1:20:36
9000 -- (-4565.761) (-4493.030) [-4484.595] (-4538.962) * [-4505.837] (-4559.762) (-4670.618) (-4503.300) -- 1:20:44
10000 -- (-4520.069) (-4498.221) (-4484.955) [-4480.335] * (-4490.746) (-4549.091) (-4635.329) [-4506.926] -- 1:22:30
Average standard deviation of split frequencies: 0.099697
11000 -- (-4531.462) (-4467.459) (-4490.954) [-4483.894] * (-4483.882) (-4547.990) (-4593.581) [-4497.252] -- 1:22:25
12000 -- (-4499.224) (-4493.858) (-4529.081) [-4486.953] * [-4474.227] (-4507.108) (-4546.777) (-4499.871) -- 1:22:20
13000 -- (-4486.447) [-4473.773] (-4531.135) (-4503.164) * [-4473.418] (-4475.946) (-4551.769) (-4499.107) -- 1:22:15
14000 -- (-4473.947) [-4476.780] (-4529.815) (-4508.242) * (-4487.569) (-4498.656) (-4519.162) [-4490.270] -- 1:22:10
15000 -- [-4460.550] (-4476.141) (-4514.974) (-4495.165) * [-4474.997] (-4509.000) (-4498.627) (-4516.536) -- 1:23:10
Average standard deviation of split frequencies: 0.090121
16000 -- [-4458.824] (-4483.183) (-4542.002) (-4493.255) * [-4475.022] (-4500.118) (-4499.916) (-4512.258) -- 1:23:01
17000 -- [-4462.463] (-4466.676) (-4538.006) (-4492.530) * (-4480.494) [-4467.814] (-4474.454) (-4513.375) -- 1:22:52
18000 -- [-4474.718] (-4485.439) (-4520.788) (-4485.157) * (-4503.832) [-4446.854] (-4498.234) (-4514.218) -- 1:22:44
19000 -- [-4466.254] (-4522.494) (-4510.331) (-4475.855) * (-4522.624) [-4458.538] (-4499.633) (-4507.053) -- 1:22:36
20000 -- (-4464.153) (-4481.808) (-4516.507) [-4477.153] * (-4486.365) [-4476.463] (-4497.554) (-4515.132) -- 1:22:29
Average standard deviation of split frequencies: 0.086936
21000 -- (-4468.108) (-4502.580) (-4508.288) [-4467.132] * (-4471.383) [-4472.197] (-4514.314) (-4534.065) -- 1:22:21
22000 -- [-4482.441] (-4498.705) (-4544.206) (-4474.888) * [-4450.026] (-4463.089) (-4519.620) (-4508.268) -- 1:22:14
23000 -- (-4491.692) (-4484.790) (-4532.108) [-4468.691] * [-4461.843] (-4479.261) (-4526.782) (-4496.001) -- 1:22:07
24000 -- [-4482.099] (-4504.759) (-4486.984) (-4466.249) * [-4479.672] (-4473.549) (-4501.642) (-4507.490) -- 1:22:00
25000 -- (-4484.940) (-4477.548) (-4486.151) [-4457.431] * (-4480.886) (-4481.550) [-4481.802] (-4509.967) -- 1:22:33
Average standard deviation of split frequencies: 0.075628
26000 -- (-4506.270) (-4488.659) (-4490.386) [-4469.938] * (-4476.078) [-4478.714] (-4483.761) (-4510.762) -- 1:21:47
27000 -- (-4503.346) (-4507.663) (-4482.682) [-4457.315] * [-4466.218] (-4481.406) (-4512.367) (-4504.991) -- 1:22:17
28000 -- (-4500.808) (-4523.468) [-4481.563] (-4461.975) * [-4452.603] (-4526.098) (-4544.086) (-4468.468) -- 1:22:09
29000 -- (-4502.827) (-4502.161) [-4454.143] (-4486.582) * (-4488.911) (-4499.934) (-4540.178) [-4468.233] -- 1:22:01
30000 -- (-4483.109) (-4500.906) [-4447.007] (-4473.392) * (-4511.513) (-4508.352) (-4493.999) [-4482.692] -- 1:21:54
Average standard deviation of split frequencies: 0.073286
31000 -- (-4477.320) (-4526.697) [-4459.291] (-4467.929) * (-4472.269) (-4507.076) [-4492.333] (-4476.529) -- 1:21:47
32000 -- (-4518.981) (-4494.956) [-4452.433] (-4456.992) * [-4461.366] (-4520.442) (-4488.502) (-4512.317) -- 1:21:40
33000 -- (-4533.572) (-4498.707) (-4451.110) [-4459.911] * [-4472.538] (-4530.207) (-4462.298) (-4509.186) -- 1:21:33
34000 -- (-4499.838) (-4468.732) [-4451.062] (-4502.158) * (-4476.143) (-4516.450) [-4458.492] (-4532.781) -- 1:21:55
35000 -- (-4479.319) (-4493.495) [-4447.052] (-4500.745) * (-4473.405) (-4522.347) [-4469.978] (-4500.823) -- 1:21:47
Average standard deviation of split frequencies: 0.066350
36000 -- (-4496.040) (-4505.435) [-4461.618] (-4497.014) * [-4466.645] (-4516.132) (-4467.043) (-4525.832) -- 1:21:40
37000 -- (-4488.109) (-4504.000) [-4441.917] (-4502.175) * (-4481.883) (-4490.814) [-4468.417] (-4513.078) -- 1:21:33
38000 -- (-4473.284) (-4509.328) [-4448.649] (-4497.938) * (-4499.264) [-4471.707] (-4477.614) (-4516.545) -- 1:21:25
39000 -- (-4466.707) (-4511.875) [-4444.957] (-4508.744) * (-4500.054) [-4460.573] (-4487.446) (-4533.035) -- 1:21:18
40000 -- [-4463.117] (-4510.489) (-4468.751) (-4482.153) * [-4486.892] (-4481.632) (-4506.254) (-4517.926) -- 1:21:12
Average standard deviation of split frequencies: 0.063870
41000 -- [-4458.533] (-4526.346) (-4474.950) (-4483.597) * [-4466.311] (-4520.803) (-4497.335) (-4508.929) -- 1:21:28
42000 -- [-4460.131] (-4487.075) (-4467.530) (-4510.299) * [-4467.246] (-4510.074) (-4486.208) (-4509.145) -- 1:21:21
43000 -- [-4454.631] (-4486.675) (-4489.532) (-4508.786) * [-4483.557] (-4491.433) (-4490.501) (-4509.447) -- 1:21:14
44000 -- [-4475.837] (-4466.058) (-4487.022) (-4526.660) * (-4482.510) [-4479.342] (-4493.272) (-4478.111) -- 1:21:06
45000 -- (-4489.222) (-4483.511) [-4466.111] (-4522.270) * [-4462.904] (-4477.359) (-4516.869) (-4464.568) -- 1:20:59
Average standard deviation of split frequencies: 0.052191
46000 -- (-4481.422) (-4499.608) [-4462.911] (-4530.286) * [-4459.537] (-4512.541) (-4503.805) (-4494.442) -- 1:21:13
47000 -- (-4473.114) (-4491.245) [-4462.625] (-4515.191) * [-4471.693] (-4501.496) (-4530.841) (-4486.152) -- 1:21:06
48000 -- (-4469.939) (-4484.726) [-4465.459] (-4521.518) * [-4457.892] (-4501.850) (-4490.400) (-4468.373) -- 1:20:59
49000 -- (-4481.428) (-4467.243) [-4461.477] (-4523.506) * [-4461.762] (-4478.677) (-4498.265) (-4479.246) -- 1:20:52
50000 -- (-4480.565) [-4457.935] (-4472.059) (-4516.152) * [-4467.020] (-4508.749) (-4488.982) (-4489.416) -- 1:20:45
Average standard deviation of split frequencies: 0.052870
51000 -- [-4475.983] (-4467.619) (-4494.850) (-4549.136) * (-4493.161) (-4508.482) [-4474.904] (-4482.640) -- 1:20:56
52000 -- [-4457.878] (-4469.614) (-4471.199) (-4510.585) * (-4489.117) (-4498.272) [-4453.417] (-4504.338) -- 1:20:49
53000 -- [-4451.815] (-4486.655) (-4493.126) (-4516.301) * (-4497.131) (-4456.980) [-4469.941] (-4507.505) -- 1:20:42
54000 -- [-4444.336] (-4495.223) (-4511.334) (-4529.353) * (-4472.292) [-4464.017] (-4499.083) (-4506.129) -- 1:20:35
55000 -- [-4461.234] (-4477.119) (-4503.168) (-4516.384) * (-4486.845) [-4461.392] (-4513.176) (-4530.230) -- 1:20:28
Average standard deviation of split frequencies: 0.050964
56000 -- [-4451.288] (-4484.984) (-4506.322) (-4508.758) * (-4486.827) (-4478.384) (-4510.590) [-4475.336] -- 1:20:21
57000 -- [-4457.073] (-4488.500) (-4537.294) (-4476.275) * (-4487.088) (-4479.072) (-4493.498) [-4451.292] -- 1:20:14
58000 -- (-4466.633) [-4471.546] (-4505.559) (-4504.826) * [-4474.000] (-4477.399) (-4489.637) (-4473.565) -- 1:20:07
59000 -- [-4486.849] (-4478.973) (-4483.706) (-4520.919) * [-4466.154] (-4506.187) (-4485.284) (-4461.726) -- 1:20:00
60000 -- (-4480.556) [-4478.818] (-4472.415) (-4499.480) * [-4471.286] (-4488.438) (-4490.374) (-4491.097) -- 1:19:54
Average standard deviation of split frequencies: 0.051960
61000 -- (-4483.134) (-4484.288) (-4510.967) [-4477.952] * [-4468.697] (-4482.464) (-4497.203) (-4501.455) -- 1:20:02
62000 -- (-4516.197) (-4490.705) (-4494.330) [-4470.523] * (-4481.805) (-4499.428) [-4484.500] (-4495.720) -- 1:19:55
63000 -- (-4503.504) [-4485.945] (-4497.011) (-4476.294) * [-4453.019] (-4500.275) (-4488.617) (-4501.110) -- 1:19:49
64000 -- (-4517.966) [-4474.092] (-4512.196) (-4488.255) * [-4465.955] (-4489.924) (-4480.438) (-4496.006) -- 1:19:42
65000 -- (-4506.751) [-4470.374] (-4497.691) (-4500.905) * (-4479.084) [-4468.304] (-4493.296) (-4522.540) -- 1:19:35
Average standard deviation of split frequencies: 0.044133
66000 -- [-4476.961] (-4480.964) (-4521.884) (-4515.689) * [-4484.474] (-4472.733) (-4506.836) (-4519.275) -- 1:19:29
67000 -- (-4464.247) [-4494.931] (-4495.500) (-4511.872) * (-4475.103) [-4474.621] (-4498.487) (-4540.256) -- 1:19:36
68000 -- [-4461.740] (-4492.893) (-4515.540) (-4513.334) * (-4498.379) [-4455.288] (-4485.014) (-4529.928) -- 1:19:29
69000 -- (-4487.134) (-4516.212) (-4513.826) [-4488.564] * (-4469.624) [-4447.259] (-4517.334) (-4530.512) -- 1:19:22
70000 -- (-4489.610) [-4499.114] (-4527.999) (-4507.449) * (-4494.561) [-4453.623] (-4513.046) (-4518.580) -- 1:19:16
Average standard deviation of split frequencies: 0.042514
71000 -- [-4463.717] (-4493.868) (-4498.561) (-4478.644) * (-4532.307) [-4460.930] (-4517.164) (-4499.641) -- 1:19:09
72000 -- [-4456.014] (-4495.394) (-4499.207) (-4519.257) * (-4524.522) [-4449.935] (-4493.870) (-4500.504) -- 1:19:03
73000 -- [-4455.840] (-4498.888) (-4482.966) (-4538.563) * (-4508.785) [-4450.004] (-4494.702) (-4514.955) -- 1:19:09
74000 -- (-4465.766) (-4499.028) [-4470.133] (-4508.481) * [-4506.892] (-4484.037) (-4509.251) (-4515.888) -- 1:19:02
75000 -- (-4471.548) (-4494.993) [-4479.790] (-4502.919) * (-4504.236) [-4461.505] (-4489.655) (-4521.509) -- 1:18:56
Average standard deviation of split frequencies: 0.041589
76000 -- [-4464.914] (-4495.073) (-4549.435) (-4506.777) * (-4472.991) [-4459.288] (-4482.221) (-4535.376) -- 1:18:49
77000 -- (-4483.435) [-4485.822] (-4517.585) (-4509.150) * [-4457.739] (-4468.141) (-4515.861) (-4509.466) -- 1:18:42
78000 -- (-4478.134) [-4467.915] (-4502.896) (-4494.918) * [-4458.348] (-4484.187) (-4519.732) (-4497.987) -- 1:18:36
79000 -- [-4460.168] (-4471.235) (-4541.918) (-4506.036) * [-4451.335] (-4490.810) (-4507.201) (-4479.069) -- 1:18:29
80000 -- [-4458.668] (-4482.180) (-4520.894) (-4485.857) * [-4450.200] (-4488.582) (-4538.854) (-4494.505) -- 1:18:23
Average standard deviation of split frequencies: 0.043299
81000 -- [-4454.576] (-4504.796) (-4494.187) (-4495.551) * [-4468.989] (-4518.618) (-4513.494) (-4514.636) -- 1:18:28
82000 -- [-4448.946] (-4498.599) (-4503.732) (-4472.275) * [-4474.180] (-4500.666) (-4505.222) (-4492.934) -- 1:18:21
83000 -- [-4438.162] (-4501.405) (-4502.463) (-4466.670) * (-4481.893) (-4510.716) (-4482.117) [-4489.771] -- 1:18:15
84000 -- [-4445.661] (-4497.037) (-4503.716) (-4454.114) * (-4480.439) (-4514.238) (-4461.849) [-4468.584] -- 1:18:09
85000 -- [-4449.073] (-4498.286) (-4507.653) (-4473.561) * (-4471.514) (-4520.655) (-4474.836) [-4468.237] -- 1:18:02
Average standard deviation of split frequencies: 0.042631
86000 -- [-4459.951] (-4511.337) (-4515.086) (-4469.969) * [-4478.674] (-4481.516) (-4480.569) (-4486.929) -- 1:17:56
87000 -- (-4479.450) (-4517.869) (-4490.308) [-4477.964] * (-4480.215) (-4512.513) (-4492.593) [-4484.642] -- 1:17:49
88000 -- (-4479.386) (-4509.674) (-4499.981) [-4482.783] * (-4479.772) (-4529.233) (-4509.891) [-4474.881] -- 1:17:43
89000 -- (-4482.996) (-4526.350) (-4491.147) [-4493.761] * [-4476.891] (-4507.485) (-4505.005) (-4485.057) -- 1:17:37
90000 -- [-4482.055] (-4520.395) (-4493.571) (-4491.689) * [-4491.125] (-4492.783) (-4521.941) (-4489.253) -- 1:17:31
Average standard deviation of split frequencies: 0.043378
91000 -- (-4447.020) [-4493.243] (-4504.081) (-4505.810) * (-4497.617) [-4489.413] (-4544.502) (-4481.894) -- 1:17:24
92000 -- [-4452.614] (-4474.912) (-4491.638) (-4489.707) * (-4503.845) (-4473.515) (-4523.870) [-4466.207] -- 1:17:18
93000 -- [-4452.038] (-4524.204) (-4472.760) (-4491.804) * (-4514.396) (-4503.326) (-4493.737) [-4442.832] -- 1:17:12
94000 -- (-4448.292) (-4539.830) [-4455.281] (-4479.995) * (-4502.039) (-4506.923) (-4499.167) [-4447.831] -- 1:17:06
95000 -- [-4476.623] (-4486.795) (-4491.180) (-4479.697) * (-4509.397) (-4491.471) (-4546.156) [-4455.603] -- 1:17:09
Average standard deviation of split frequencies: 0.042220
96000 -- (-4483.006) (-4489.264) (-4473.400) [-4453.940] * (-4516.946) [-4473.066] (-4573.693) (-4472.394) -- 1:17:03
97000 -- (-4519.332) (-4475.374) (-4482.259) [-4471.791] * (-4528.631) [-4475.531] (-4535.141) (-4460.727) -- 1:16:57
98000 -- (-4518.314) (-4469.745) (-4492.215) [-4462.712] * (-4511.926) (-4474.063) (-4518.516) [-4461.940] -- 1:16:51
99000 -- (-4524.785) (-4505.552) (-4465.838) [-4462.165] * (-4510.388) [-4477.043] (-4522.775) (-4468.813) -- 1:16:45
100000 -- (-4509.909) (-4501.676) [-4458.503] (-4495.207) * (-4508.311) (-4481.273) (-4507.708) [-4469.357] -- 1:16:39
Average standard deviation of split frequencies: 0.040535
101000 -- (-4489.106) (-4500.001) [-4476.711] (-4479.395) * (-4509.086) (-4479.771) (-4512.172) [-4461.621] -- 1:16:32
102000 -- (-4454.472) (-4516.573) (-4475.353) [-4465.310] * (-4542.817) (-4479.647) (-4511.618) [-4452.851] -- 1:16:26
103000 -- (-4470.570) (-4525.678) (-4466.558) [-4460.821] * (-4517.657) (-4459.797) (-4538.696) [-4435.579] -- 1:16:29
104000 -- (-4490.098) (-4518.340) (-4466.300) [-4462.866] * (-4512.815) (-4481.668) (-4517.394) [-4454.720] -- 1:16:23
105000 -- (-4494.378) (-4538.427) (-4468.946) [-4455.028] * (-4499.144) (-4493.137) (-4528.313) [-4441.928] -- 1:16:17
Average standard deviation of split frequencies: 0.040091
106000 -- [-4468.820] (-4518.446) (-4485.781) (-4464.541) * (-4521.162) (-4486.190) (-4495.569) [-4453.960] -- 1:16:11
107000 -- [-4453.191] (-4502.135) (-4483.001) (-4457.219) * (-4536.948) (-4478.316) (-4472.294) [-4460.302] -- 1:16:05
108000 -- (-4461.357) (-4510.351) (-4497.652) [-4475.386] * (-4514.188) (-4487.643) (-4489.085) [-4460.878] -- 1:15:59
109000 -- [-4462.524] (-4509.548) (-4504.405) (-4452.669) * (-4509.958) [-4476.448] (-4503.927) (-4460.177) -- 1:15:53
110000 -- [-4461.689] (-4521.767) (-4492.842) (-4456.925) * (-4519.134) [-4477.455] (-4505.639) (-4481.718) -- 1:15:47
Average standard deviation of split frequencies: 0.039523
111000 -- [-4475.377] (-4518.557) (-4476.103) (-4485.725) * (-4534.591) [-4477.422] (-4516.012) (-4492.752) -- 1:15:41
112000 -- (-4458.827) (-4528.585) (-4474.345) [-4466.532] * (-4555.242) (-4489.040) (-4493.941) [-4463.232] -- 1:15:35
113000 -- [-4455.271] (-4522.330) (-4463.160) (-4492.576) * (-4543.099) (-4494.536) (-4496.291) [-4465.676] -- 1:15:29
114000 -- [-4459.740] (-4546.911) (-4492.058) (-4472.731) * (-4532.284) (-4461.496) (-4506.672) [-4465.847] -- 1:15:23
115000 -- [-4473.198] (-4532.533) (-4513.476) (-4490.669) * (-4500.347) [-4453.948] (-4496.935) (-4479.418) -- 1:15:17
Average standard deviation of split frequencies: 0.037690
116000 -- [-4471.107] (-4529.597) (-4496.853) (-4480.902) * (-4532.727) [-4470.889] (-4493.363) (-4501.014) -- 1:15:11
117000 -- [-4457.302] (-4513.255) (-4517.195) (-4476.936) * (-4511.909) [-4467.013] (-4508.895) (-4493.028) -- 1:15:05
118000 -- (-4469.610) (-4529.806) (-4488.183) [-4486.270] * (-4508.053) [-4465.074] (-4502.231) (-4469.728) -- 1:15:07
119000 -- (-4478.075) (-4523.686) [-4468.102] (-4485.129) * (-4535.327) [-4462.242] (-4487.147) (-4460.844) -- 1:15:01
120000 -- (-4502.759) (-4510.902) [-4466.021] (-4466.090) * (-4520.255) [-4458.877] (-4481.483) (-4477.528) -- 1:14:55
Average standard deviation of split frequencies: 0.037204
121000 -- (-4508.900) (-4512.319) [-4468.079] (-4470.848) * (-4493.509) [-4459.486] (-4514.266) (-4488.804) -- 1:14:49
122000 -- (-4492.352) (-4519.622) [-4461.867] (-4495.921) * (-4522.833) [-4468.290] (-4516.460) (-4503.607) -- 1:14:43
123000 -- (-4523.137) [-4487.521] (-4470.063) (-4496.718) * (-4532.038) [-4475.060] (-4502.730) (-4492.624) -- 1:14:37
124000 -- (-4504.896) (-4496.998) [-4468.973] (-4522.507) * (-4518.138) (-4489.752) (-4513.526) [-4474.659] -- 1:14:31
125000 -- (-4486.027) [-4463.853] (-4476.401) (-4530.901) * (-4517.222) (-4473.952) (-4513.052) [-4480.199] -- 1:14:26
Average standard deviation of split frequencies: 0.035383
126000 -- (-4483.343) (-4483.665) [-4461.693] (-4528.678) * (-4531.332) (-4473.407) (-4500.370) [-4465.271] -- 1:14:20
127000 -- (-4514.270) [-4466.864] (-4468.361) (-4499.604) * (-4532.064) (-4478.124) (-4494.696) [-4465.078] -- 1:14:14
128000 -- (-4510.843) [-4475.827] (-4461.490) (-4498.628) * (-4521.998) (-4508.099) (-4491.263) [-4462.272] -- 1:14:15
129000 -- (-4521.043) [-4449.113] (-4481.178) (-4483.472) * (-4498.530) (-4513.566) (-4497.668) [-4468.313] -- 1:14:09
130000 -- (-4490.940) [-4461.734] (-4486.813) (-4500.326) * [-4471.452] (-4519.086) (-4502.340) (-4475.679) -- 1:14:03
Average standard deviation of split frequencies: 0.036002
131000 -- (-4499.840) [-4461.684] (-4488.141) (-4486.330) * (-4505.377) (-4533.310) (-4486.186) [-4461.410] -- 1:13:57
132000 -- (-4515.605) [-4458.717] (-4492.152) (-4504.594) * (-4485.932) (-4512.429) (-4468.823) [-4460.967] -- 1:13:52
133000 -- (-4524.147) [-4470.208] (-4468.185) (-4502.605) * (-4500.060) [-4471.124] (-4476.049) (-4477.129) -- 1:13:46
134000 -- (-4495.340) [-4447.171] (-4465.080) (-4491.744) * (-4490.169) [-4453.641] (-4484.622) (-4485.563) -- 1:13:40
135000 -- (-4479.203) [-4457.032] (-4488.375) (-4483.683) * (-4522.177) (-4475.527) (-4512.637) [-4495.669] -- 1:13:41
Average standard deviation of split frequencies: 0.036627
136000 -- (-4466.839) [-4462.809] (-4498.769) (-4496.661) * (-4502.949) (-4472.774) (-4512.487) [-4485.575] -- 1:13:35
137000 -- [-4469.139] (-4485.965) (-4501.218) (-4492.611) * (-4496.219) (-4491.146) (-4509.419) [-4465.332] -- 1:13:29
138000 -- [-4485.718] (-4494.157) (-4545.922) (-4488.431) * (-4500.155) (-4488.353) (-4523.936) [-4456.352] -- 1:13:23
139000 -- [-4473.761] (-4499.545) (-4520.081) (-4495.825) * (-4512.147) (-4479.796) (-4530.890) [-4473.893] -- 1:13:17
140000 -- (-4479.422) (-4501.791) (-4545.507) [-4501.110] * (-4534.122) (-4502.278) (-4488.796) [-4462.926] -- 1:13:12
Average standard deviation of split frequencies: 0.035943
141000 -- [-4481.612] (-4489.854) (-4556.691) (-4500.544) * (-4529.658) (-4528.773) [-4465.033] (-4491.933) -- 1:13:06
142000 -- [-4482.991] (-4489.472) (-4518.081) (-4484.530) * (-4506.404) (-4512.350) (-4468.365) [-4464.834] -- 1:13:06
143000 -- (-4470.913) (-4533.819) (-4512.790) [-4466.990] * (-4511.095) (-4525.052) [-4452.130] (-4481.613) -- 1:13:00
144000 -- [-4454.741] (-4507.443) (-4520.172) (-4460.341) * (-4515.215) (-4505.842) [-4441.667] (-4460.512) -- 1:12:55
145000 -- [-4451.376] (-4524.256) (-4504.370) (-4488.998) * (-4532.384) (-4500.147) [-4436.487] (-4484.470) -- 1:12:49
Average standard deviation of split frequencies: 0.035343
146000 -- [-4461.435] (-4512.610) (-4513.208) (-4490.445) * (-4559.752) (-4496.993) [-4442.372] (-4487.171) -- 1:12:43
147000 -- [-4450.319] (-4484.236) (-4495.514) (-4502.369) * (-4545.680) (-4499.774) [-4466.615] (-4494.649) -- 1:12:37
148000 -- [-4461.808] (-4482.784) (-4509.402) (-4524.096) * (-4511.042) (-4511.393) [-4468.810] (-4480.918) -- 1:12:37
149000 -- [-4456.951] (-4508.032) (-4496.164) (-4534.495) * (-4516.270) (-4499.098) [-4481.243] (-4488.900) -- 1:12:32
150000 -- [-4474.092] (-4483.287) (-4504.789) (-4548.154) * (-4538.845) (-4491.383) (-4497.323) [-4474.367] -- 1:12:26
Average standard deviation of split frequencies: 0.033754
151000 -- (-4485.786) (-4492.260) [-4474.720] (-4542.359) * (-4526.438) [-4466.763] (-4485.580) (-4465.911) -- 1:12:20
152000 -- (-4496.131) (-4481.022) [-4483.037] (-4518.644) * (-4519.140) [-4458.467] (-4492.327) (-4483.165) -- 1:12:14
153000 -- (-4488.433) [-4476.605] (-4503.992) (-4537.150) * (-4497.917) [-4459.592] (-4484.917) (-4513.349) -- 1:12:09
154000 -- [-4481.167] (-4499.639) (-4509.098) (-4530.989) * (-4513.710) [-4450.707] (-4496.130) (-4505.229) -- 1:12:03
155000 -- [-4484.031] (-4516.611) (-4497.511) (-4520.435) * [-4498.920] (-4470.415) (-4510.928) (-4512.550) -- 1:12:03
Average standard deviation of split frequencies: 0.032101
156000 -- [-4443.476] (-4510.889) (-4469.677) (-4511.041) * [-4445.979] (-4489.102) (-4520.337) (-4503.503) -- 1:11:57
157000 -- [-4468.076] (-4495.564) (-4473.146) (-4508.626) * [-4442.779] (-4475.156) (-4504.877) (-4508.225) -- 1:11:51
158000 -- [-4472.134] (-4496.830) (-4483.853) (-4490.077) * [-4448.685] (-4478.611) (-4508.489) (-4492.049) -- 1:11:45
159000 -- (-4486.685) (-4518.932) [-4481.460] (-4512.349) * [-4446.666] (-4488.122) (-4516.048) (-4491.639) -- 1:11:40
160000 -- (-4469.627) (-4501.186) [-4475.712] (-4519.166) * [-4459.857] (-4493.544) (-4526.402) (-4474.791) -- 1:11:34
Average standard deviation of split frequencies: 0.030635
161000 -- [-4463.064] (-4484.203) (-4462.458) (-4528.287) * [-4461.681] (-4489.859) (-4530.170) (-4476.062) -- 1:11:28
162000 -- (-4498.010) (-4472.084) [-4453.344] (-4538.693) * (-4471.051) (-4515.927) (-4506.428) [-4449.926] -- 1:11:23
163000 -- (-4491.739) (-4485.604) [-4469.494] (-4536.845) * [-4466.263] (-4495.107) (-4514.538) (-4468.801) -- 1:11:17
164000 -- (-4487.208) (-4488.835) [-4463.797] (-4502.390) * [-4464.639] (-4506.260) (-4507.032) (-4494.474) -- 1:11:16
165000 -- [-4457.549] (-4486.199) (-4485.333) (-4509.886) * [-4458.225] (-4486.855) (-4490.063) (-4500.276) -- 1:11:11
Average standard deviation of split frequencies: 0.029154
166000 -- [-4452.536] (-4503.616) (-4473.543) (-4514.016) * [-4456.054] (-4463.206) (-4479.042) (-4502.000) -- 1:11:05
167000 -- (-4472.978) [-4491.735] (-4479.332) (-4507.025) * [-4444.773] (-4464.383) (-4483.776) (-4497.793) -- 1:10:59
168000 -- (-4460.198) [-4472.165] (-4478.197) (-4510.605) * [-4465.019] (-4467.415) (-4495.169) (-4513.002) -- 1:10:54
169000 -- [-4454.586] (-4502.627) (-4508.411) (-4469.982) * (-4467.264) [-4471.425] (-4518.810) (-4496.079) -- 1:10:48
170000 -- [-4459.440] (-4504.397) (-4489.428) (-4465.554) * (-4501.662) [-4452.738] (-4547.378) (-4479.026) -- 1:10:42
Average standard deviation of split frequencies: 0.030013
171000 -- [-4465.382] (-4510.523) (-4486.047) (-4478.053) * (-4505.058) (-4470.801) (-4560.925) [-4473.120] -- 1:10:37
172000 -- (-4447.292) (-4510.464) (-4478.032) [-4465.854] * (-4503.464) [-4478.047] (-4566.529) (-4489.025) -- 1:10:31
173000 -- [-4456.268] (-4524.315) (-4456.020) (-4485.420) * (-4468.351) [-4447.575] (-4563.193) (-4482.936) -- 1:10:25
174000 -- [-4449.466] (-4506.418) (-4470.777) (-4501.255) * (-4481.171) (-4460.542) (-4549.322) [-4455.243] -- 1:10:20
175000 -- [-4443.800] (-4501.322) (-4476.351) (-4518.167) * (-4488.224) [-4453.871] (-4515.638) (-4488.020) -- 1:10:14
Average standard deviation of split frequencies: 0.029671
176000 -- (-4470.960) (-4516.452) [-4474.196] (-4500.400) * (-4503.150) [-4450.067] (-4507.546) (-4502.428) -- 1:10:08
177000 -- [-4449.380] (-4513.323) (-4487.087) (-4500.900) * (-4495.868) [-4450.826] (-4472.591) (-4521.940) -- 1:10:03
178000 -- [-4467.048] (-4507.502) (-4473.827) (-4506.310) * (-4502.197) (-4458.370) [-4482.874] (-4513.212) -- 1:09:57
179000 -- [-4503.214] (-4519.136) (-4465.718) (-4498.648) * (-4498.095) (-4459.227) [-4485.679] (-4516.639) -- 1:09:52
180000 -- (-4512.293) (-4494.083) [-4462.389] (-4483.981) * (-4498.083) [-4464.755] (-4483.707) (-4517.042) -- 1:09:51
Average standard deviation of split frequencies: 0.029962
181000 -- (-4548.152) (-4481.196) (-4475.674) [-4493.733] * (-4493.620) [-4454.221] (-4491.059) (-4507.057) -- 1:09:45
182000 -- (-4507.489) (-4486.449) [-4467.100] (-4483.367) * (-4479.584) [-4455.110] (-4505.493) (-4500.438) -- 1:09:39
183000 -- (-4506.795) (-4505.022) (-4486.120) [-4452.360] * (-4492.970) [-4448.066] (-4473.764) (-4505.181) -- 1:09:34
184000 -- (-4534.718) (-4490.809) (-4475.539) [-4453.645] * (-4480.606) [-4455.916] (-4486.988) (-4514.148) -- 1:09:33
185000 -- (-4509.661) (-4504.654) (-4482.809) [-4456.166] * (-4484.751) [-4472.722] (-4484.323) (-4512.757) -- 1:09:27
Average standard deviation of split frequencies: 0.029968
186000 -- (-4490.921) (-4520.937) (-4478.995) [-4462.973] * (-4496.407) [-4454.193] (-4496.349) (-4519.996) -- 1:09:21
187000 -- (-4498.491) (-4496.107) (-4486.516) [-4447.987] * (-4500.149) [-4454.516] (-4485.785) (-4543.876) -- 1:09:16
188000 -- (-4532.304) (-4489.015) [-4473.546] (-4466.127) * (-4493.285) [-4474.933] (-4486.454) (-4527.128) -- 1:09:10
189000 -- (-4496.218) (-4505.334) [-4459.132] (-4475.627) * (-4509.038) (-4467.968) [-4461.560] (-4486.778) -- 1:09:09
190000 -- (-4456.212) (-4540.718) [-4468.176] (-4497.736) * (-4487.599) (-4480.308) [-4466.332] (-4490.569) -- 1:09:03
Average standard deviation of split frequencies: 0.030133
191000 -- (-4478.405) (-4507.737) [-4463.914] (-4490.878) * (-4489.179) (-4471.806) [-4463.377] (-4496.127) -- 1:08:58
192000 -- (-4516.745) (-4501.207) [-4461.928] (-4501.825) * (-4497.606) (-4525.436) [-4465.266] (-4467.489) -- 1:08:52
193000 -- (-4511.756) (-4509.183) [-4461.703] (-4477.611) * (-4482.218) (-4488.246) [-4475.722] (-4505.556) -- 1:08:46
194000 -- (-4503.987) (-4497.690) [-4457.232] (-4481.362) * (-4497.949) (-4516.050) [-4467.298] (-4493.895) -- 1:08:41
195000 -- (-4507.499) (-4493.967) (-4448.864) [-4463.635] * (-4512.749) (-4493.898) [-4471.495] (-4497.104) -- 1:08:35
Average standard deviation of split frequencies: 0.029227
196000 -- (-4516.050) (-4495.868) (-4481.374) [-4463.648] * (-4470.811) (-4479.906) [-4477.379] (-4502.224) -- 1:08:30
197000 -- (-4538.647) (-4494.394) (-4486.731) [-4462.026] * (-4507.587) (-4485.119) [-4472.517] (-4488.255) -- 1:08:24
198000 -- (-4518.692) (-4468.896) (-4473.335) [-4461.342] * (-4476.699) [-4470.091] (-4490.274) (-4494.220) -- 1:08:23
199000 -- (-4531.353) (-4476.215) [-4470.081] (-4459.245) * (-4480.384) [-4458.669] (-4511.284) (-4506.026) -- 1:08:17
200000 -- (-4497.412) (-4496.923) [-4462.110] (-4472.868) * (-4476.523) [-4487.566] (-4508.961) (-4489.264) -- 1:08:12
Average standard deviation of split frequencies: 0.028112
201000 -- (-4489.423) (-4523.636) [-4446.504] (-4471.910) * (-4482.905) [-4479.724] (-4522.391) (-4523.436) -- 1:08:06
202000 -- (-4495.504) (-4489.027) (-4459.590) [-4479.602] * (-4481.502) (-4472.161) (-4504.358) [-4480.230] -- 1:08:00
203000 -- (-4508.586) (-4476.663) [-4447.093] (-4491.991) * (-4482.188) [-4467.365] (-4514.421) (-4468.978) -- 1:07:59
204000 -- (-4523.314) (-4472.710) [-4449.286] (-4483.984) * (-4510.173) (-4481.770) (-4521.257) [-4471.323] -- 1:07:53
205000 -- (-4547.545) (-4477.543) [-4463.949] (-4481.329) * [-4480.795] (-4503.083) (-4510.534) (-4496.399) -- 1:07:48
Average standard deviation of split frequencies: 0.027827
206000 -- (-4516.356) (-4487.224) [-4449.773] (-4475.212) * (-4502.847) (-4491.107) (-4535.642) [-4465.854] -- 1:07:42
207000 -- (-4523.941) (-4463.378) [-4458.096] (-4482.371) * (-4504.354) (-4468.905) (-4541.588) [-4454.011] -- 1:07:36
208000 -- (-4517.173) (-4481.623) (-4476.456) [-4478.345] * (-4507.157) (-4459.890) (-4496.801) [-4460.239] -- 1:07:35
209000 -- (-4495.945) (-4515.088) (-4477.018) [-4467.841] * (-4538.625) (-4468.492) (-4516.350) [-4471.591] -- 1:07:29
210000 -- (-4503.128) (-4489.543) (-4496.597) [-4478.686] * (-4490.829) (-4469.087) (-4506.214) [-4473.201] -- 1:07:24
Average standard deviation of split frequencies: 0.027552
211000 -- (-4489.018) (-4477.120) (-4469.132) [-4476.736] * (-4486.886) (-4456.388) (-4509.984) [-4453.819] -- 1:07:18
212000 -- (-4490.060) (-4479.922) (-4457.454) [-4457.262] * (-4520.993) [-4463.017] (-4540.029) (-4469.729) -- 1:07:16
213000 -- (-4528.025) (-4479.679) (-4462.466) [-4462.965] * (-4514.115) [-4467.207] (-4534.585) (-4473.656) -- 1:07:11
214000 -- (-4512.059) [-4462.535] (-4486.165) (-4488.326) * (-4513.432) [-4451.947] (-4519.405) (-4467.234) -- 1:07:05
215000 -- (-4511.522) [-4474.486] (-4461.014) (-4481.713) * (-4535.203) [-4470.783] (-4495.270) (-4466.311) -- 1:06:59
Average standard deviation of split frequencies: 0.026854
216000 -- (-4531.778) (-4512.928) (-4479.867) [-4487.774] * (-4512.588) (-4471.784) (-4530.476) [-4456.569] -- 1:06:54
217000 -- (-4523.756) (-4518.101) [-4459.080] (-4482.754) * (-4502.199) (-4498.702) (-4503.923) [-4468.900] -- 1:06:48
218000 -- (-4517.941) (-4521.928) [-4464.674] (-4475.097) * (-4486.274) (-4517.783) (-4527.231) [-4460.747] -- 1:06:43
219000 -- (-4520.253) (-4533.668) [-4469.716] (-4490.650) * (-4472.042) (-4502.920) (-4544.999) [-4457.536] -- 1:06:41
220000 -- (-4498.924) (-4521.074) [-4457.723] (-4480.630) * (-4473.749) (-4500.144) (-4555.425) [-4478.274] -- 1:06:35
Average standard deviation of split frequencies: 0.025760
221000 -- (-4491.731) (-4541.418) [-4455.688] (-4500.355) * (-4466.554) (-4513.428) (-4562.828) [-4467.700] -- 1:06:30
222000 -- (-4491.228) (-4546.655) [-4460.656] (-4488.016) * (-4472.213) (-4513.948) (-4543.434) [-4467.878] -- 1:06:24
223000 -- (-4480.867) (-4539.956) [-4449.699] (-4480.360) * (-4481.182) (-4540.027) (-4510.412) [-4463.312] -- 1:06:19
224000 -- [-4455.044] (-4548.201) (-4445.044) (-4489.606) * (-4481.538) (-4504.958) (-4534.646) [-4445.860] -- 1:06:13
225000 -- (-4464.278) (-4540.193) [-4447.447] (-4495.471) * (-4477.084) (-4518.652) (-4488.064) [-4451.907] -- 1:06:11
Average standard deviation of split frequencies: 0.024608
226000 -- (-4455.263) (-4497.852) [-4465.168] (-4515.449) * (-4484.640) (-4494.393) (-4468.067) [-4454.113] -- 1:06:05
227000 -- [-4453.279] (-4513.111) (-4471.186) (-4493.358) * (-4483.313) (-4519.845) (-4469.049) [-4466.762] -- 1:06:00
228000 -- (-4479.390) (-4520.161) [-4461.531] (-4486.944) * (-4506.833) (-4532.444) (-4478.573) [-4462.026] -- 1:05:54
229000 -- (-4496.139) (-4514.754) [-4461.639] (-4479.978) * (-4492.643) (-4551.806) (-4511.262) [-4453.190] -- 1:05:49
230000 -- (-4501.022) (-4512.784) [-4457.008] (-4483.178) * (-4516.672) (-4510.520) (-4479.753) [-4452.478] -- 1:05:43
Average standard deviation of split frequencies: 0.023032
231000 -- (-4508.397) (-4515.398) [-4454.778] (-4477.598) * (-4521.660) (-4517.745) (-4467.423) [-4458.286] -- 1:05:38
232000 -- (-4499.321) (-4505.385) (-4467.885) [-4462.642] * (-4531.151) (-4513.839) (-4522.157) [-4454.870] -- 1:05:32
233000 -- (-4481.307) (-4525.685) [-4461.497] (-4497.752) * (-4509.681) (-4485.623) (-4507.660) [-4450.219] -- 1:05:27
234000 -- [-4460.074] (-4524.781) (-4464.176) (-4477.142) * (-4503.005) (-4498.725) (-4488.728) [-4442.106] -- 1:05:21
235000 -- [-4447.077] (-4508.670) (-4484.220) (-4493.873) * (-4527.522) (-4480.749) (-4515.972) [-4433.787] -- 1:05:19
Average standard deviation of split frequencies: 0.022642
236000 -- [-4448.368] (-4508.525) (-4479.480) (-4494.140) * (-4532.118) (-4492.669) (-4492.511) [-4436.090] -- 1:05:13
237000 -- (-4466.529) (-4502.877) [-4477.424] (-4505.260) * (-4480.745) (-4508.236) (-4489.318) [-4443.008] -- 1:05:08
238000 -- [-4471.126] (-4489.329) (-4478.015) (-4513.423) * (-4463.641) (-4495.393) (-4500.924) [-4446.069] -- 1:05:02
239000 -- [-4478.186] (-4521.307) (-4466.783) (-4502.513) * (-4480.529) (-4478.588) (-4507.779) [-4450.562] -- 1:04:57
240000 -- (-4479.520) (-4505.175) [-4443.410] (-4514.815) * (-4466.066) (-4501.747) (-4490.077) [-4445.416] -- 1:04:51
Average standard deviation of split frequencies: 0.022431
241000 -- [-4460.783] (-4498.015) (-4481.500) (-4494.932) * [-4457.909] (-4511.050) (-4481.157) (-4462.285) -- 1:04:49
242000 -- [-4467.668] (-4488.234) (-4480.899) (-4516.384) * (-4462.614) (-4513.419) (-4498.662) [-4448.701] -- 1:04:43
243000 -- (-4479.004) (-4494.237) [-4476.808] (-4514.396) * (-4474.400) (-4508.176) (-4511.607) [-4451.084] -- 1:04:38
244000 -- (-4490.114) (-4482.538) [-4465.862] (-4509.724) * (-4489.622) (-4528.695) (-4500.046) [-4447.314] -- 1:04:32
245000 -- (-4477.373) (-4479.462) [-4454.502] (-4458.827) * (-4469.955) (-4506.828) (-4497.364) [-4454.457] -- 1:04:27
Average standard deviation of split frequencies: 0.022657
246000 -- (-4489.235) (-4472.518) (-4460.773) [-4472.432] * [-4455.304] (-4520.859) (-4516.235) (-4462.187) -- 1:04:21
247000 -- (-4486.373) (-4491.672) [-4445.797] (-4484.743) * (-4452.464) (-4493.375) (-4504.405) [-4439.527] -- 1:04:16
248000 -- (-4510.869) (-4498.271) [-4442.166] (-4502.988) * (-4456.948) (-4486.919) (-4504.544) [-4443.870] -- 1:04:10
249000 -- (-4511.054) (-4477.994) [-4452.788] (-4487.454) * [-4466.470] (-4490.145) (-4549.620) (-4465.796) -- 1:04:05
250000 -- (-4509.576) (-4498.617) [-4455.613] (-4478.945) * [-4449.928] (-4520.888) (-4527.564) (-4490.236) -- 1:04:00
Average standard deviation of split frequencies: 0.022776
251000 -- (-4511.073) (-4491.514) [-4463.560] (-4468.991) * [-4453.699] (-4531.687) (-4492.792) (-4511.548) -- 1:03:57
252000 -- (-4535.910) (-4498.989) [-4459.579] (-4486.763) * [-4451.144] (-4547.575) (-4484.689) (-4512.108) -- 1:03:52
253000 -- (-4534.818) (-4509.358) [-4446.757] (-4494.751) * [-4457.524] (-4544.011) (-4490.572) (-4486.917) -- 1:03:46
254000 -- (-4511.095) (-4491.357) [-4455.771] (-4506.251) * [-4482.184] (-4545.724) (-4480.312) (-4486.622) -- 1:03:41
255000 -- (-4509.508) (-4494.432) (-4450.285) [-4479.228] * [-4479.274] (-4537.778) (-4469.710) (-4504.019) -- 1:03:35
Average standard deviation of split frequencies: 0.021866
256000 -- (-4501.748) (-4475.569) [-4465.562] (-4490.379) * (-4467.465) (-4529.223) [-4458.043] (-4493.310) -- 1:03:30
257000 -- (-4476.318) [-4467.108] (-4474.335) (-4513.689) * (-4481.012) (-4527.856) [-4465.819] (-4495.763) -- 1:03:24
258000 -- (-4496.498) (-4464.865) [-4467.481] (-4528.764) * (-4504.662) [-4485.167] (-4483.420) (-4502.862) -- 1:03:22
259000 -- (-4498.682) [-4461.435] (-4481.973) (-4491.843) * (-4503.074) (-4480.159) [-4454.866] (-4523.593) -- 1:03:16
260000 -- [-4483.348] (-4464.428) (-4497.841) (-4491.363) * (-4512.856) (-4474.408) [-4468.030] (-4502.832) -- 1:03:11
Average standard deviation of split frequencies: 0.022495
261000 -- (-4477.002) [-4473.366] (-4481.644) (-4515.777) * (-4491.270) (-4466.937) [-4483.277] (-4520.379) -- 1:03:05
262000 -- (-4468.463) (-4505.015) [-4478.884] (-4530.778) * [-4459.956] (-4480.260) (-4472.786) (-4527.602) -- 1:03:00
263000 -- [-4468.749] (-4516.065) (-4468.636) (-4521.019) * [-4460.934] (-4477.619) (-4478.217) (-4522.185) -- 1:02:54
264000 -- (-4487.266) (-4516.880) [-4449.117] (-4504.536) * [-4475.993] (-4484.383) (-4488.748) (-4532.292) -- 1:02:49
265000 -- [-4485.903] (-4526.334) (-4484.601) (-4513.269) * (-4471.779) (-4487.526) [-4482.251] (-4532.029) -- 1:02:43
Average standard deviation of split frequencies: 0.022424
266000 -- [-4461.661] (-4523.959) (-4473.069) (-4503.540) * [-4458.628] (-4514.128) (-4481.226) (-4531.697) -- 1:02:38
267000 -- [-4468.404] (-4498.719) (-4483.868) (-4519.149) * [-4463.946] (-4495.065) (-4477.511) (-4548.423) -- 1:02:35
268000 -- (-4458.283) (-4509.522) [-4461.581] (-4509.752) * [-4472.216] (-4482.771) (-4471.528) (-4518.957) -- 1:02:30
269000 -- (-4476.263) (-4507.060) [-4479.913] (-4497.448) * [-4469.637] (-4494.701) (-4478.611) (-4505.050) -- 1:02:24
270000 -- (-4492.719) (-4500.640) [-4473.522] (-4504.304) * [-4471.945] (-4508.649) (-4479.442) (-4487.242) -- 1:02:19
Average standard deviation of split frequencies: 0.022761
271000 -- (-4493.111) (-4481.609) [-4477.582] (-4516.469) * [-4456.039] (-4499.207) (-4505.588) (-4495.888) -- 1:02:13
272000 -- (-4484.152) (-4466.062) [-4484.686] (-4498.678) * (-4468.700) [-4477.295] (-4500.714) (-4494.244) -- 1:02:08
273000 -- (-4473.670) [-4463.106] (-4517.181) (-4493.694) * (-4480.235) [-4461.566] (-4492.688) (-4458.659) -- 1:02:02
274000 -- (-4482.851) [-4468.723] (-4503.286) (-4515.176) * (-4483.446) (-4450.362) (-4481.361) [-4481.290] -- 1:02:00
275000 -- (-4473.710) [-4467.110] (-4502.808) (-4528.748) * (-4456.659) [-4465.110] (-4468.058) (-4529.626) -- 1:01:54
Average standard deviation of split frequencies: 0.022833
276000 -- (-4483.630) [-4450.630] (-4489.572) (-4514.057) * (-4447.333) [-4461.918] (-4488.032) (-4550.195) -- 1:01:49
277000 -- (-4488.036) [-4458.993] (-4497.033) (-4509.428) * (-4454.926) [-4464.344] (-4484.999) (-4516.948) -- 1:01:43
278000 -- (-4489.740) [-4453.320] (-4497.552) (-4520.412) * [-4449.640] (-4483.762) (-4477.177) (-4516.960) -- 1:01:38
279000 -- (-4470.565) [-4452.212] (-4488.507) (-4513.663) * (-4496.824) [-4471.369] (-4483.621) (-4488.363) -- 1:01:32
280000 -- (-4476.287) [-4462.126] (-4479.200) (-4537.213) * (-4492.642) [-4463.987] (-4502.887) (-4485.566) -- 1:01:27
Average standard deviation of split frequencies: 0.023200
281000 -- (-4491.647) [-4456.993] (-4482.854) (-4521.457) * [-4472.493] (-4466.873) (-4518.542) (-4485.844) -- 1:01:21
282000 -- (-4493.706) (-4466.786) [-4469.068] (-4485.753) * [-4467.366] (-4490.289) (-4495.970) (-4506.227) -- 1:01:16
283000 -- (-4510.339) [-4459.933] (-4491.651) (-4472.453) * (-4478.175) [-4473.542] (-4491.017) (-4486.621) -- 1:01:11
284000 -- (-4495.249) [-4481.080] (-4497.118) (-4462.287) * (-4458.922) [-4455.581] (-4482.893) (-4492.842) -- 1:01:05
285000 -- (-4520.375) [-4481.072] (-4505.290) (-4478.861) * [-4458.081] (-4479.447) (-4512.861) (-4484.426) -- 1:01:00
Average standard deviation of split frequencies: 0.023377
286000 -- (-4529.017) (-4480.028) (-4500.280) [-4465.528] * (-4468.359) [-4462.771] (-4521.331) (-4491.962) -- 1:00:57
287000 -- (-4521.897) (-4479.242) (-4521.926) [-4468.862] * [-4467.627] (-4476.293) (-4545.213) (-4493.244) -- 1:00:51
288000 -- (-4550.551) (-4483.887) (-4496.318) [-4459.217] * (-4464.934) (-4476.323) (-4536.924) [-4459.504] -- 1:00:46
289000 -- (-4557.941) (-4505.794) (-4480.538) [-4470.975] * [-4467.657] (-4489.673) (-4531.248) (-4478.126) -- 1:00:41
290000 -- (-4546.366) (-4510.396) (-4482.006) [-4473.475] * [-4466.774] (-4506.511) (-4509.540) (-4479.866) -- 1:00:35
Average standard deviation of split frequencies: 0.023080
291000 -- (-4511.448) (-4523.875) [-4473.112] (-4478.640) * (-4482.507) [-4480.997] (-4514.582) (-4494.926) -- 1:00:30
292000 -- (-4495.928) (-4513.973) (-4484.096) [-4473.457] * [-4475.678] (-4497.969) (-4526.202) (-4514.074) -- 1:00:24
293000 -- (-4484.006) (-4532.202) (-4489.950) [-4474.393] * [-4471.443] (-4478.849) (-4513.206) (-4504.445) -- 1:00:19
294000 -- (-4477.213) (-4490.073) (-4517.966) [-4470.995] * [-4465.046] (-4480.909) (-4542.007) (-4510.303) -- 1:00:16
295000 -- (-4472.864) (-4494.087) (-4530.016) [-4463.862] * [-4483.681] (-4497.905) (-4516.311) (-4499.697) -- 1:00:11
Average standard deviation of split frequencies: 0.023038
296000 -- (-4467.343) (-4507.714) (-4509.779) [-4494.551] * (-4530.444) (-4470.949) (-4534.536) [-4476.635] -- 1:00:05
297000 -- (-4508.036) (-4505.841) (-4519.217) [-4468.961] * (-4507.253) [-4460.716] (-4493.345) (-4513.316) -- 1:00:00
298000 -- (-4503.903) (-4477.981) (-4513.460) [-4489.132] * (-4528.847) (-4474.078) (-4488.131) [-4479.614] -- 0:59:54
299000 -- (-4519.610) [-4466.522] (-4511.459) (-4464.568) * [-4490.226] (-4506.531) (-4510.032) (-4490.904) -- 0:59:49
300000 -- (-4513.451) (-4474.771) (-4474.024) [-4464.865] * (-4488.241) (-4503.880) [-4485.425] (-4517.144) -- 0:59:44
Average standard deviation of split frequencies: 0.023328
301000 -- (-4513.966) [-4473.129] (-4510.695) (-4477.422) * [-4480.821] (-4520.561) (-4504.843) (-4476.485) -- 0:59:38
302000 -- (-4505.614) [-4477.774] (-4509.097) (-4476.570) * (-4486.581) (-4521.574) [-4487.269] (-4475.394) -- 0:59:35
303000 -- (-4487.671) (-4490.820) (-4515.820) [-4467.306] * (-4503.093) (-4505.977) [-4466.458] (-4478.910) -- 0:59:30
304000 -- (-4481.606) (-4509.411) (-4507.280) [-4477.818] * (-4518.025) (-4498.394) [-4476.320] (-4492.529) -- 0:59:24
305000 -- [-4463.551] (-4484.084) (-4496.275) (-4479.862) * (-4505.835) (-4525.940) [-4452.274] (-4482.559) -- 0:59:19
Average standard deviation of split frequencies: 0.022878
306000 -- (-4477.848) [-4456.936] (-4515.763) (-4479.701) * (-4504.228) (-4541.495) (-4480.100) [-4474.348] -- 0:59:13
307000 -- (-4477.086) (-4466.526) (-4505.582) [-4462.441] * [-4470.259] (-4543.534) (-4485.843) (-4500.500) -- 0:59:10
308000 -- (-4484.542) [-4468.908] (-4507.568) (-4496.432) * [-4486.878] (-4532.035) (-4494.550) (-4490.416) -- 0:59:05
309000 -- (-4500.598) [-4487.370] (-4477.538) (-4519.126) * (-4501.653) (-4509.448) [-4477.124] (-4518.921) -- 0:58:59
310000 -- (-4499.997) [-4470.396] (-4478.444) (-4522.671) * (-4499.828) [-4476.983] (-4481.748) (-4520.510) -- 0:58:54
Average standard deviation of split frequencies: 0.022060
311000 -- (-4485.103) [-4477.012] (-4484.748) (-4532.541) * (-4483.790) [-4477.184] (-4485.117) (-4497.043) -- 0:58:49
312000 -- (-4490.777) [-4474.209] (-4509.417) (-4524.780) * (-4467.942) [-4467.757] (-4507.574) (-4515.719) -- 0:58:43
313000 -- (-4502.014) [-4481.247] (-4486.788) (-4506.453) * (-4465.593) [-4466.851] (-4509.410) (-4510.457) -- 0:58:38
314000 -- [-4491.680] (-4476.910) (-4491.982) (-4505.175) * (-4512.071) [-4458.708] (-4498.130) (-4476.829) -- 0:58:33
315000 -- (-4502.662) [-4456.692] (-4496.658) (-4523.648) * (-4507.602) [-4458.893] (-4489.676) (-4483.870) -- 0:58:29
Average standard deviation of split frequencies: 0.021721
316000 -- (-4508.637) [-4468.936] (-4488.509) (-4526.288) * (-4483.186) [-4482.778] (-4512.352) (-4482.809) -- 0:58:24
317000 -- (-4509.635) [-4470.557] (-4500.187) (-4514.747) * (-4487.857) (-4523.898) (-4496.730) [-4461.894] -- 0:58:19
318000 -- (-4501.531) [-4462.437] (-4503.117) (-4514.099) * [-4469.298] (-4527.803) (-4514.924) (-4473.214) -- 0:58:13
319000 -- (-4515.509) [-4454.673] (-4484.073) (-4489.882) * [-4463.958] (-4539.574) (-4498.561) (-4469.260) -- 0:58:08
320000 -- (-4506.216) [-4464.919] (-4489.293) (-4483.988) * (-4459.710) (-4508.387) (-4502.533) [-4470.834] -- 0:58:02
Average standard deviation of split frequencies: 0.021859
321000 -- (-4520.184) [-4474.023] (-4469.241) (-4503.798) * [-4470.994] (-4495.663) (-4483.998) (-4461.045) -- 0:57:57
322000 -- (-4533.131) [-4484.498] (-4461.883) (-4515.990) * (-4478.937) (-4476.401) [-4464.709] (-4472.428) -- 0:57:54
323000 -- (-4533.132) (-4494.355) [-4475.949] (-4519.824) * [-4459.303] (-4511.256) (-4464.963) (-4476.659) -- 0:57:48
324000 -- (-4516.426) (-4498.066) [-4469.718] (-4482.590) * [-4460.641] (-4500.728) (-4476.996) (-4523.472) -- 0:57:43
325000 -- (-4508.965) (-4476.700) (-4467.888) [-4498.272] * [-4441.762] (-4485.096) (-4477.002) (-4507.851) -- 0:57:38
Average standard deviation of split frequencies: 0.021971
326000 -- (-4502.648) [-4466.382] (-4479.217) (-4477.518) * (-4463.627) [-4464.912] (-4475.573) (-4530.251) -- 0:57:32
327000 -- (-4517.989) [-4476.802] (-4490.626) (-4473.995) * (-4478.852) (-4477.376) [-4459.441] (-4502.714) -- 0:57:29
328000 -- (-4517.013) [-4467.856] (-4468.880) (-4474.835) * (-4474.694) (-4476.606) [-4465.287] (-4523.273) -- 0:57:24
329000 -- (-4530.872) (-4484.962) [-4454.420] (-4500.063) * (-4467.351) (-4475.888) [-4459.765] (-4515.258) -- 0:57:18
330000 -- (-4538.320) (-4486.301) [-4457.837] (-4471.722) * [-4454.352] (-4478.380) (-4501.242) (-4500.496) -- 0:57:13
Average standard deviation of split frequencies: 0.022460
331000 -- (-4523.083) [-4483.236] (-4474.637) (-4464.245) * (-4499.294) (-4472.459) (-4475.210) [-4467.594] -- 0:57:07
332000 -- (-4516.273) (-4496.559) [-4485.233] (-4489.530) * (-4498.129) (-4478.047) [-4478.649] (-4482.146) -- 0:57:04
333000 -- (-4482.166) (-4475.578) (-4492.639) [-4483.504] * (-4510.354) (-4474.792) [-4453.700] (-4481.816) -- 0:56:59
334000 -- (-4490.227) [-4470.760] (-4471.756) (-4499.979) * (-4496.528) (-4475.354) [-4445.854] (-4488.220) -- 0:56:53
335000 -- (-4461.744) [-4465.227] (-4459.265) (-4490.425) * (-4506.766) (-4478.118) [-4462.449] (-4512.345) -- 0:56:48
Average standard deviation of split frequencies: 0.022737
336000 -- (-4486.250) (-4453.468) [-4451.029] (-4510.638) * (-4528.394) [-4461.997] (-4497.490) (-4511.483) -- 0:56:43
337000 -- (-4499.255) [-4457.924] (-4447.783) (-4523.947) * (-4487.577) [-4462.468] (-4497.643) (-4491.000) -- 0:56:37
338000 -- (-4501.378) [-4460.027] (-4461.442) (-4503.153) * (-4508.408) [-4464.021] (-4474.268) (-4506.417) -- 0:56:34
339000 -- (-4519.239) (-4479.741) [-4435.919] (-4521.122) * (-4497.137) [-4446.913] (-4474.686) (-4539.897) -- 0:56:28
340000 -- (-4513.777) (-4496.871) [-4436.203] (-4480.487) * (-4495.581) [-4457.727] (-4475.087) (-4504.445) -- 0:56:23
Average standard deviation of split frequencies: 0.022928
341000 -- (-4520.135) (-4484.012) [-4455.536] (-4479.576) * (-4497.018) (-4474.048) [-4477.361] (-4523.175) -- 0:56:18
342000 -- (-4532.769) [-4487.258] (-4460.890) (-4472.207) * (-4503.333) (-4457.066) [-4452.581] (-4518.442) -- 0:56:14
343000 -- (-4530.262) [-4462.601] (-4479.743) (-4471.330) * (-4482.721) [-4451.546] (-4461.005) (-4524.046) -- 0:56:09
344000 -- (-4519.746) [-4450.927] (-4453.761) (-4511.715) * (-4498.621) [-4457.804] (-4493.291) (-4523.844) -- 0:56:03
345000 -- (-4520.553) [-4456.492] (-4466.090) (-4505.817) * [-4482.965] (-4477.715) (-4512.599) (-4516.972) -- 0:55:58
Average standard deviation of split frequencies: 0.023185
346000 -- (-4499.610) [-4462.889] (-4480.138) (-4481.420) * [-4454.838] (-4493.218) (-4486.150) (-4517.541) -- 0:55:53
347000 -- (-4508.819) [-4455.693] (-4486.278) (-4524.013) * [-4464.035] (-4475.024) (-4493.111) (-4536.377) -- 0:55:49
348000 -- (-4486.604) (-4474.244) [-4460.955] (-4518.466) * [-4474.418] (-4476.997) (-4490.025) (-4498.709) -- 0:55:44
349000 -- (-4511.968) [-4490.094] (-4483.509) (-4515.289) * (-4498.191) (-4480.401) (-4493.962) [-4481.936] -- 0:55:38
350000 -- (-4489.042) (-4472.981) [-4480.644] (-4530.700) * (-4489.691) (-4501.288) [-4469.037] (-4496.896) -- 0:55:33
Average standard deviation of split frequencies: 0.023627
351000 -- (-4476.345) [-4457.402] (-4496.391) (-4504.311) * (-4472.000) (-4516.399) (-4490.817) [-4481.823] -- 0:55:28
352000 -- (-4501.085) (-4471.186) [-4470.470] (-4477.054) * [-4456.093] (-4519.199) (-4483.601) (-4490.270) -- 0:55:22
353000 -- (-4499.502) [-4467.013] (-4501.258) (-4491.269) * [-4462.501] (-4539.752) (-4478.410) (-4486.203) -- 0:55:17
354000 -- (-4517.011) (-4488.466) (-4490.238) [-4477.093] * [-4448.794] (-4519.698) (-4479.720) (-4471.439) -- 0:55:12
355000 -- (-4516.180) [-4462.080] (-4494.608) (-4486.171) * [-4456.315] (-4511.533) (-4478.158) (-4472.178) -- 0:55:06
Average standard deviation of split frequencies: 0.024130
356000 -- (-4535.982) [-4466.157] (-4488.436) (-4512.746) * [-4459.743] (-4522.237) (-4489.861) (-4486.960) -- 0:55:03
357000 -- (-4489.937) [-4457.459] (-4470.111) (-4513.287) * [-4454.965] (-4520.915) (-4475.483) (-4489.031) -- 0:54:57
358000 -- (-4479.566) [-4471.444] (-4483.782) (-4536.565) * (-4461.843) (-4515.537) [-4464.576] (-4484.507) -- 0:54:52
359000 -- (-4504.805) (-4506.732) [-4491.655] (-4506.702) * (-4475.067) (-4518.633) [-4461.513] (-4482.596) -- 0:54:47
360000 -- (-4483.968) [-4468.039] (-4483.028) (-4509.044) * (-4478.862) (-4499.487) [-4443.104] (-4498.552) -- 0:54:41
Average standard deviation of split frequencies: 0.024564
361000 -- (-4520.596) (-4464.045) [-4460.514] (-4475.825) * (-4488.577) [-4477.160] (-4453.989) (-4490.904) -- 0:54:36
362000 -- (-4508.309) (-4483.994) [-4451.357] (-4480.603) * (-4507.055) (-4467.571) [-4478.034] (-4486.747) -- 0:54:31
363000 -- (-4510.226) [-4473.821] (-4473.792) (-4466.354) * (-4497.909) (-4468.155) [-4481.447] (-4520.817) -- 0:54:27
364000 -- (-4512.548) (-4459.043) [-4468.698] (-4488.973) * (-4490.554) [-4477.676] (-4488.562) (-4501.309) -- 0:54:22
365000 -- (-4509.587) [-4464.703] (-4490.064) (-4502.717) * (-4488.463) [-4470.766] (-4481.816) (-4519.922) -- 0:54:16
Average standard deviation of split frequencies: 0.023778
366000 -- (-4513.211) (-4476.767) [-4480.800] (-4529.780) * (-4497.834) [-4449.344] (-4494.202) (-4509.679) -- 0:54:11
367000 -- (-4485.856) (-4458.197) [-4455.007] (-4560.458) * (-4483.275) [-4465.773] (-4496.963) (-4540.670) -- 0:54:06
368000 -- (-4485.551) (-4474.043) [-4467.877] (-4523.320) * (-4497.229) [-4445.184] (-4492.431) (-4504.881) -- 0:54:00
369000 -- (-4484.058) (-4479.406) [-4464.545] (-4528.887) * (-4506.979) [-4454.777] (-4500.387) (-4485.488) -- 0:53:55
370000 -- (-4496.702) (-4485.707) [-4459.922] (-4516.378) * (-4496.754) [-4469.454] (-4473.591) (-4522.654) -- 0:53:50
Average standard deviation of split frequencies: 0.023794
371000 -- (-4489.856) (-4502.186) [-4459.328] (-4517.345) * (-4502.735) [-4478.205] (-4479.927) (-4531.056) -- 0:53:46
372000 -- (-4519.659) [-4470.074] (-4459.858) (-4516.917) * [-4481.341] (-4484.474) (-4477.507) (-4504.697) -- 0:53:41
373000 -- (-4522.852) [-4469.084] (-4486.581) (-4494.800) * (-4475.865) [-4467.933] (-4466.914) (-4498.463) -- 0:53:35
374000 -- (-4516.591) [-4456.779] (-4483.403) (-4486.787) * (-4467.672) (-4497.747) [-4477.603] (-4503.125) -- 0:53:30
375000 -- (-4522.047) (-4471.578) (-4482.623) [-4461.939] * [-4456.548] (-4499.319) (-4460.627) (-4489.655) -- 0:53:25
Average standard deviation of split frequencies: 0.023242
376000 -- (-4523.364) [-4461.110] (-4493.615) (-4472.649) * (-4461.057) (-4485.733) [-4448.649] (-4511.694) -- 0:53:19
377000 -- (-4515.227) (-4469.917) (-4483.610) [-4462.705] * (-4477.398) (-4513.295) [-4452.859] (-4525.085) -- 0:53:14
378000 -- (-4518.378) (-4484.840) (-4499.455) [-4441.474] * (-4481.728) (-4503.475) [-4459.913] (-4503.038) -- 0:53:08
379000 -- (-4534.589) (-4479.644) (-4506.188) [-4451.958] * [-4471.596] (-4500.123) (-4486.136) (-4510.838) -- 0:53:03
380000 -- (-4522.920) (-4506.522) (-4474.432) [-4457.713] * [-4457.668] (-4484.528) (-4485.349) (-4480.072) -- 0:52:58
Average standard deviation of split frequencies: 0.023175
381000 -- (-4511.223) (-4504.939) (-4474.657) [-4442.916] * [-4469.993] (-4513.697) (-4504.758) (-4476.371) -- 0:52:52
382000 -- (-4508.665) (-4489.151) (-4479.823) [-4444.529] * (-4484.201) (-4532.084) [-4483.105] (-4489.901) -- 0:52:49
383000 -- (-4520.717) (-4473.771) (-4487.843) [-4455.601] * (-4513.147) (-4507.082) [-4460.236] (-4484.677) -- 0:52:43
384000 -- (-4502.148) (-4475.274) (-4474.700) [-4449.323] * (-4534.716) (-4508.358) [-4458.961] (-4495.365) -- 0:52:38
385000 -- (-4522.014) [-4467.504] (-4483.403) (-4489.230) * (-4506.509) (-4538.561) [-4462.750] (-4496.680) -- 0:52:33
Average standard deviation of split frequencies: 0.022615
386000 -- (-4504.784) [-4453.715] (-4487.839) (-4492.115) * (-4499.238) (-4533.433) [-4453.941] (-4484.157) -- 0:52:27
387000 -- (-4494.044) (-4472.598) (-4496.354) [-4490.386] * (-4482.094) (-4497.500) [-4452.909] (-4470.407) -- 0:52:22
388000 -- (-4505.827) [-4480.147] (-4538.209) (-4487.010) * (-4504.135) (-4517.906) [-4448.929] (-4476.244) -- 0:52:17
389000 -- (-4506.487) [-4465.613] (-4527.336) (-4497.192) * (-4493.855) (-4505.889) [-4463.373] (-4478.033) -- 0:52:11
390000 -- (-4519.005) [-4460.434] (-4528.637) (-4504.740) * (-4507.562) (-4482.876) [-4472.749] (-4489.672) -- 0:52:06
Average standard deviation of split frequencies: 0.023438
391000 -- (-4529.441) [-4455.256] (-4520.941) (-4519.046) * (-4506.216) (-4490.113) [-4451.785] (-4509.225) -- 0:52:01
392000 -- (-4490.468) [-4463.446] (-4548.708) (-4521.057) * (-4512.984) [-4463.075] (-4466.431) (-4518.451) -- 0:51:57
393000 -- (-4498.675) [-4464.247] (-4540.778) (-4503.050) * (-4485.013) [-4465.069] (-4472.405) (-4502.703) -- 0:51:52
394000 -- [-4466.519] (-4470.476) (-4518.240) (-4517.352) * (-4485.644) (-4478.089) [-4469.972] (-4500.327) -- 0:51:46
395000 -- (-4477.577) [-4454.566] (-4497.661) (-4500.860) * (-4487.182) (-4498.621) [-4467.676] (-4516.056) -- 0:51:41
Average standard deviation of split frequencies: 0.024076
396000 -- (-4488.570) [-4454.182] (-4511.089) (-4507.759) * (-4503.367) (-4514.914) [-4453.301] (-4465.324) -- 0:51:36
397000 -- (-4503.981) [-4463.710] (-4493.085) (-4488.540) * (-4503.284) (-4511.811) [-4457.259] (-4489.443) -- 0:51:30
398000 -- (-4521.173) [-4452.834] (-4508.350) (-4478.362) * (-4488.060) (-4521.377) [-4453.651] (-4484.621) -- 0:51:27
399000 -- (-4504.806) [-4469.059] (-4498.002) (-4478.251) * [-4477.423] (-4499.924) (-4445.211) (-4477.731) -- 0:51:21
400000 -- (-4495.036) [-4462.372] (-4497.273) (-4493.308) * (-4482.410) (-4536.130) [-4447.062] (-4479.774) -- 0:51:16
Average standard deviation of split frequencies: 0.024219
401000 -- (-4494.120) [-4465.970] (-4475.153) (-4515.885) * (-4479.308) (-4528.896) [-4451.353] (-4465.781) -- 0:51:11
402000 -- [-4479.919] (-4499.813) (-4513.009) (-4509.635) * (-4506.381) (-4529.585) (-4453.110) [-4456.130] -- 0:51:07
403000 -- [-4484.821] (-4518.586) (-4495.815) (-4510.615) * (-4518.521) (-4508.733) [-4439.582] (-4480.704) -- 0:51:02
404000 -- [-4486.287] (-4519.632) (-4509.686) (-4490.068) * (-4503.402) (-4531.287) [-4457.210] (-4522.640) -- 0:50:56
405000 -- [-4463.142] (-4504.847) (-4526.898) (-4477.955) * (-4513.358) (-4491.152) [-4478.381] (-4522.672) -- 0:50:51
Average standard deviation of split frequencies: 0.024060
406000 -- (-4473.765) (-4513.418) (-4509.102) [-4462.614] * (-4531.898) [-4454.384] (-4491.530) (-4508.932) -- 0:50:47
407000 -- [-4463.027] (-4505.625) (-4556.022) (-4457.986) * (-4541.172) (-4458.137) [-4469.864] (-4521.496) -- 0:50:42
408000 -- [-4472.835] (-4509.865) (-4562.934) (-4495.970) * (-4515.682) [-4469.780] (-4489.929) (-4511.963) -- 0:50:36
409000 -- [-4461.462] (-4501.110) (-4530.494) (-4492.982) * (-4502.920) (-4488.056) [-4467.737] (-4529.871) -- 0:50:31
410000 -- [-4473.804] (-4493.939) (-4513.903) (-4487.481) * (-4471.291) (-4472.456) [-4450.631] (-4534.500) -- 0:50:26
Average standard deviation of split frequencies: 0.024407
411000 -- [-4462.010] (-4509.298) (-4546.221) (-4474.987) * (-4486.733) (-4474.514) [-4453.037] (-4532.225) -- 0:50:20
412000 -- (-4494.055) [-4488.416] (-4546.253) (-4498.518) * (-4484.325) (-4452.073) [-4448.207] (-4519.051) -- 0:50:17
413000 -- [-4495.218] (-4503.422) (-4494.902) (-4515.128) * (-4517.803) [-4455.965] (-4466.436) (-4516.764) -- 0:50:11
414000 -- (-4469.783) [-4482.912] (-4502.960) (-4514.934) * (-4559.152) [-4449.029] (-4472.372) (-4530.127) -- 0:50:06
415000 -- [-4481.764] (-4488.100) (-4513.995) (-4516.353) * (-4525.106) [-4462.743] (-4468.062) (-4516.987) -- 0:50:01
Average standard deviation of split frequencies: 0.024937
416000 -- (-4490.783) [-4467.674] (-4521.736) (-4496.655) * (-4550.230) (-4453.095) [-4475.217] (-4504.270) -- 0:49:55
417000 -- (-4482.929) [-4478.062] (-4514.647) (-4487.786) * (-4531.674) [-4462.565] (-4485.594) (-4494.543) -- 0:49:51
418000 -- (-4478.009) [-4482.852] (-4521.187) (-4483.549) * (-4532.602) [-4456.145] (-4484.274) (-4491.972) -- 0:49:46
419000 -- (-4484.020) (-4475.810) (-4520.606) [-4463.232] * (-4498.486) [-4457.014] (-4466.322) (-4475.433) -- 0:49:41
420000 -- (-4481.101) (-4511.838) (-4509.602) [-4462.049] * (-4479.372) [-4470.860] (-4467.075) (-4503.220) -- 0:49:35
Average standard deviation of split frequencies: 0.025090
421000 -- [-4485.382] (-4501.711) (-4485.074) (-4483.569) * (-4482.345) [-4465.771] (-4487.176) (-4527.785) -- 0:49:30
422000 -- (-4470.761) (-4544.913) [-4472.357] (-4485.996) * (-4486.490) [-4476.126] (-4474.817) (-4535.422) -- 0:49:25
423000 -- (-4486.300) (-4517.829) (-4478.185) [-4488.011] * (-4496.209) [-4476.788] (-4488.437) (-4545.699) -- 0:49:20
424000 -- (-4496.582) (-4511.121) (-4476.466) [-4459.074] * (-4482.635) [-4467.629] (-4481.602) (-4533.224) -- 0:49:16
425000 -- (-4481.552) (-4478.568) (-4500.987) [-4472.829] * (-4474.682) [-4456.617] (-4483.962) (-4530.361) -- 0:49:10
Average standard deviation of split frequencies: 0.024762
426000 -- (-4479.424) [-4462.005] (-4497.880) (-4487.215) * (-4463.397) [-4459.279] (-4486.653) (-4542.295) -- 0:49:05
427000 -- (-4495.396) [-4464.991] (-4495.434) (-4481.856) * (-4478.633) (-4474.377) [-4476.824] (-4529.721) -- 0:49:00
428000 -- (-4496.877) [-4468.949] (-4502.664) (-4484.648) * (-4492.252) [-4470.693] (-4468.649) (-4532.970) -- 0:48:54
429000 -- [-4471.530] (-4485.542) (-4502.612) (-4519.000) * (-4490.556) (-4487.009) [-4471.694] (-4517.817) -- 0:48:50
430000 -- (-4480.692) [-4442.046] (-4487.937) (-4500.355) * (-4510.916) (-4481.232) [-4460.110] (-4535.294) -- 0:48:45
Average standard deviation of split frequencies: 0.024615
431000 -- (-4483.004) [-4440.550] (-4478.789) (-4499.781) * (-4510.512) [-4465.340] (-4483.652) (-4531.165) -- 0:48:40
432000 -- (-4480.348) [-4448.186] (-4487.454) (-4532.534) * (-4524.611) [-4476.773] (-4477.494) (-4517.105) -- 0:48:34
433000 -- (-4458.614) [-4450.269] (-4518.554) (-4520.248) * (-4513.157) [-4453.732] (-4479.073) (-4526.020) -- 0:48:29
434000 -- (-4473.465) [-4466.111] (-4493.427) (-4532.325) * (-4505.027) [-4447.125] (-4483.505) (-4507.659) -- 0:48:24
435000 -- (-4500.274) [-4469.904] (-4494.981) (-4540.758) * (-4517.802) [-4459.582] (-4473.094) (-4507.137) -- 0:48:20
Average standard deviation of split frequencies: 0.024499
436000 -- (-4523.879) [-4477.720] (-4524.113) (-4514.530) * (-4507.321) [-4466.909] (-4463.319) (-4474.739) -- 0:48:15
437000 -- [-4469.907] (-4482.199) (-4511.196) (-4514.959) * (-4475.770) (-4460.937) [-4466.423] (-4469.128) -- 0:48:09
438000 -- (-4470.846) [-4472.882] (-4526.546) (-4508.504) * (-4498.830) [-4448.025] (-4483.711) (-4460.506) -- 0:48:04
439000 -- (-4467.963) [-4475.683] (-4516.577) (-4528.607) * (-4479.216) (-4464.852) (-4536.590) [-4453.559] -- 0:47:59
440000 -- [-4460.245] (-4495.506) (-4514.283) (-4519.146) * (-4490.693) [-4458.785] (-4545.975) (-4472.193) -- 0:47:53
Average standard deviation of split frequencies: 0.025168
441000 -- [-4459.239] (-4499.241) (-4494.419) (-4539.350) * (-4506.874) (-4466.792) (-4525.009) [-4455.858] -- 0:47:48
442000 -- [-4459.713] (-4525.454) (-4478.042) (-4519.155) * (-4517.290) (-4472.907) (-4505.931) [-4446.789] -- 0:47:44
443000 -- (-4446.571) (-4524.991) [-4462.575] (-4505.206) * (-4508.548) (-4464.154) (-4506.604) [-4461.622] -- 0:47:39
444000 -- [-4445.774] (-4540.991) (-4492.291) (-4468.291) * (-4518.524) (-4461.214) (-4509.498) [-4470.571] -- 0:47:33
445000 -- [-4452.610] (-4516.255) (-4486.787) (-4491.618) * (-4514.313) (-4464.569) (-4503.860) [-4482.254] -- 0:47:28
Average standard deviation of split frequencies: 0.025367
446000 -- (-4468.693) (-4532.179) [-4489.463] (-4498.130) * (-4520.281) [-4473.804] (-4493.739) (-4488.782) -- 0:47:23
447000 -- (-4468.937) (-4524.709) [-4456.150] (-4524.426) * (-4527.289) [-4461.114] (-4483.859) (-4507.788) -- 0:47:19
448000 -- (-4466.407) (-4512.613) [-4465.441] (-4503.068) * (-4505.681) [-4471.922] (-4497.359) (-4523.636) -- 0:47:13
449000 -- (-4489.518) (-4496.708) [-4453.337] (-4497.045) * (-4527.222) [-4469.707] (-4471.822) (-4500.742) -- 0:47:08
450000 -- (-4484.110) (-4513.169) [-4461.769] (-4484.382) * (-4509.908) [-4476.930] (-4501.601) (-4515.674) -- 0:47:03
Average standard deviation of split frequencies: 0.025872
451000 -- [-4469.348] (-4496.878) (-4454.214) (-4500.530) * (-4454.774) [-4474.794] (-4499.462) (-4516.457) -- 0:46:58
452000 -- [-4449.356] (-4507.931) (-4476.579) (-4512.278) * [-4453.880] (-4456.384) (-4512.922) (-4536.848) -- 0:46:52
453000 -- [-4460.139] (-4499.803) (-4463.899) (-4519.412) * (-4472.884) [-4463.206] (-4491.382) (-4508.923) -- 0:46:47
454000 -- (-4473.193) (-4479.798) [-4458.275] (-4527.249) * (-4460.288) [-4447.699] (-4470.694) (-4486.602) -- 0:46:43
455000 -- [-4483.521] (-4495.764) (-4463.317) (-4499.736) * [-4472.409] (-4490.548) (-4493.504) (-4493.561) -- 0:46:38
Average standard deviation of split frequencies: 0.025963
456000 -- (-4469.996) (-4485.774) [-4472.132] (-4508.783) * [-4458.005] (-4484.590) (-4499.888) (-4491.778) -- 0:46:32
457000 -- (-4492.411) (-4473.281) [-4462.872] (-4491.072) * (-4473.954) (-4499.707) [-4483.858] (-4470.955) -- 0:46:27
458000 -- (-4512.282) (-4483.531) [-4467.183] (-4522.557) * (-4481.904) (-4484.686) (-4491.842) [-4460.630] -- 0:46:22
459000 -- (-4510.846) (-4487.020) [-4453.121] (-4482.785) * (-4511.100) (-4480.422) (-4501.993) [-4462.827] -- 0:46:16
460000 -- (-4495.879) (-4488.993) [-4456.774] (-4488.764) * (-4505.531) (-4499.380) (-4486.349) [-4462.703] -- 0:46:11
Average standard deviation of split frequencies: 0.025583
461000 -- (-4487.416) (-4491.423) [-4457.372] (-4463.579) * (-4507.774) (-4475.732) (-4497.068) [-4443.510] -- 0:46:06
462000 -- (-4485.484) (-4501.844) [-4473.862] (-4464.762) * (-4517.359) (-4464.782) (-4518.584) [-4459.887] -- 0:46:02
463000 -- (-4491.203) (-4516.002) [-4475.557] (-4483.955) * (-4515.147) [-4475.176] (-4528.413) (-4453.789) -- 0:45:56
464000 -- (-4491.304) [-4474.540] (-4491.724) (-4474.129) * [-4481.769] (-4482.028) (-4526.063) (-4490.043) -- 0:45:51
465000 -- (-4492.644) [-4468.848] (-4514.019) (-4490.565) * (-4480.897) [-4465.360] (-4530.559) (-4468.191) -- 0:45:46
Average standard deviation of split frequencies: 0.025906
466000 -- (-4488.479) [-4478.175] (-4513.021) (-4503.045) * (-4516.186) (-4478.345) (-4516.786) [-4460.133] -- 0:45:42
467000 -- (-4510.745) [-4477.519] (-4508.400) (-4497.057) * (-4508.369) (-4485.941) (-4523.315) [-4470.459] -- 0:45:36
468000 -- (-4509.169) [-4470.871] (-4519.138) (-4517.854) * (-4516.852) (-4480.120) (-4509.653) [-4462.837] -- 0:45:31
469000 -- (-4497.789) [-4469.094] (-4509.571) (-4481.976) * (-4506.406) (-4481.380) (-4507.245) [-4461.564] -- 0:45:26
470000 -- (-4505.956) [-4470.444] (-4488.025) (-4483.311) * (-4516.209) (-4456.840) (-4501.270) [-4453.778] -- 0:45:21
Average standard deviation of split frequencies: 0.025731
471000 -- (-4491.442) [-4456.132] (-4487.695) (-4503.798) * (-4508.919) [-4456.110] (-4499.250) (-4478.721) -- 0:45:15
472000 -- (-4487.133) [-4448.591] (-4484.613) (-4508.707) * (-4532.102) [-4462.346] (-4479.488) (-4475.750) -- 0:45:10
473000 -- (-4498.380) [-4447.347] (-4497.464) (-4524.178) * (-4521.464) [-4448.942] (-4483.734) (-4470.002) -- 0:45:05
474000 -- (-4487.577) [-4448.027] (-4467.151) (-4494.285) * (-4502.767) [-4455.738] (-4520.615) (-4474.913) -- 0:44:59
475000 -- (-4507.316) (-4464.832) [-4470.341] (-4480.408) * (-4521.813) (-4463.659) [-4465.416] (-4494.093) -- 0:44:55
Average standard deviation of split frequencies: 0.025708
476000 -- (-4505.252) (-4495.476) (-4468.929) [-4472.138] * (-4519.391) (-4479.450) [-4475.434] (-4483.613) -- 0:44:50
477000 -- (-4515.655) (-4491.120) [-4467.108] (-4477.671) * (-4509.455) (-4504.326) (-4468.044) [-4456.213] -- 0:44:45
478000 -- (-4497.095) (-4500.085) [-4468.490] (-4480.136) * (-4494.744) (-4517.155) [-4457.437] (-4454.585) -- 0:44:39
479000 -- (-4490.937) (-4516.510) [-4455.405] (-4474.250) * (-4496.922) (-4504.166) (-4465.449) [-4446.825] -- 0:44:34
480000 -- (-4510.603) (-4515.037) [-4441.994] (-4464.790) * (-4507.942) (-4516.885) (-4500.501) [-4464.246] -- 0:44:29
Average standard deviation of split frequencies: 0.025120
481000 -- (-4481.864) (-4511.535) [-4449.075] (-4489.772) * (-4481.083) (-4500.683) (-4488.457) [-4472.991] -- 0:44:24
482000 -- (-4484.804) (-4520.765) [-4449.173] (-4483.643) * (-4490.487) (-4524.179) (-4469.789) [-4474.139] -- 0:44:19
483000 -- (-4489.364) (-4504.145) [-4444.325] (-4484.119) * (-4511.624) (-4519.186) (-4462.701) [-4485.092] -- 0:44:14
484000 -- (-4495.090) (-4490.852) [-4463.486] (-4442.158) * (-4492.378) (-4501.674) [-4482.482] (-4482.100) -- 0:44:09
485000 -- (-4520.114) (-4481.615) (-4484.297) [-4456.682] * (-4500.168) (-4522.601) (-4479.609) [-4474.559] -- 0:44:04
Average standard deviation of split frequencies: 0.024685
486000 -- (-4511.137) (-4493.707) (-4474.155) [-4472.139] * (-4509.303) (-4520.340) [-4483.253] (-4499.160) -- 0:43:58
487000 -- (-4523.044) (-4503.135) (-4486.508) [-4468.282] * (-4507.137) [-4495.786] (-4486.268) (-4505.869) -- 0:43:54
488000 -- (-4491.553) (-4491.528) [-4462.856] (-4491.365) * (-4518.031) (-4486.599) [-4493.163] (-4516.874) -- 0:43:49
489000 -- (-4467.601) (-4504.153) [-4463.542] (-4502.493) * (-4499.419) (-4459.470) [-4477.323] (-4504.633) -- 0:43:43
490000 -- [-4463.413] (-4507.882) (-4478.259) (-4527.214) * (-4497.018) (-4477.699) [-4462.942] (-4528.373) -- 0:43:38
Average standard deviation of split frequencies: 0.024485
491000 -- [-4469.702] (-4501.428) (-4489.730) (-4549.509) * (-4528.888) (-4466.532) [-4471.743] (-4528.807) -- 0:43:33
492000 -- [-4477.916] (-4513.008) (-4478.048) (-4511.075) * (-4500.788) [-4457.143] (-4454.644) (-4512.155) -- 0:43:28
493000 -- (-4486.492) (-4519.520) [-4476.997] (-4504.323) * (-4523.782) [-4470.503] (-4470.913) (-4507.172) -- 0:43:22
494000 -- (-4484.770) (-4498.110) [-4466.177] (-4515.175) * (-4536.267) (-4493.331) [-4473.240] (-4509.908) -- 0:43:17
495000 -- (-4495.518) (-4494.181) [-4457.761] (-4489.592) * (-4518.719) [-4465.932] (-4476.240) (-4494.199) -- 0:43:13
Average standard deviation of split frequencies: 0.023939
496000 -- (-4513.110) (-4509.643) [-4435.744] (-4495.030) * (-4523.209) [-4457.898] (-4492.531) (-4500.967) -- 0:43:08
497000 -- (-4524.833) (-4503.544) [-4434.673] (-4467.199) * (-4529.627) [-4449.813] (-4482.429) (-4516.294) -- 0:43:02
498000 -- (-4487.754) (-4497.027) [-4451.335] (-4478.083) * (-4496.827) [-4454.863] (-4476.986) (-4513.738) -- 0:42:57
499000 -- (-4520.805) [-4465.435] (-4468.886) (-4473.464) * (-4506.487) [-4471.050] (-4481.641) (-4513.785) -- 0:42:52
500000 -- (-4496.451) (-4443.956) (-4496.083) [-4465.698] * (-4481.306) [-4492.046] (-4504.576) (-4484.139) -- 0:42:47
Average standard deviation of split frequencies: 0.023917
501000 -- (-4509.652) [-4444.855] (-4505.225) (-4474.638) * (-4515.193) [-4468.865] (-4476.052) (-4500.151) -- 0:42:42
502000 -- (-4523.037) [-4438.539] (-4476.653) (-4505.635) * (-4480.273) (-4472.985) [-4459.384] (-4514.315) -- 0:42:37
503000 -- (-4493.516) [-4440.028] (-4478.439) (-4498.444) * (-4473.319) (-4473.435) [-4465.120] (-4502.099) -- 0:42:32
504000 -- (-4480.390) [-4457.296] (-4508.139) (-4509.214) * [-4447.600] (-4488.068) (-4461.819) (-4519.149) -- 0:42:26
505000 -- (-4473.820) [-4457.015] (-4486.745) (-4511.230) * [-4454.723] (-4489.974) (-4459.068) (-4493.831) -- 0:42:21
Average standard deviation of split frequencies: 0.023325
506000 -- (-4507.034) [-4463.495] (-4477.677) (-4515.299) * (-4461.076) (-4475.924) [-4468.150] (-4493.434) -- 0:42:16
507000 -- (-4518.841) (-4476.745) [-4458.526] (-4513.370) * (-4511.196) [-4468.569] (-4483.280) (-4483.498) -- 0:42:11
508000 -- (-4495.560) [-4467.596] (-4470.554) (-4503.153) * (-4504.385) [-4463.910] (-4486.797) (-4461.182) -- 0:42:05
509000 -- (-4471.749) (-4493.058) [-4456.042] (-4503.661) * (-4508.406) (-4501.224) [-4475.759] (-4467.809) -- 0:42:00
510000 -- (-4515.843) (-4476.536) [-4452.481] (-4477.571) * (-4487.668) (-4498.725) [-4452.537] (-4495.046) -- 0:41:55
Average standard deviation of split frequencies: 0.022941
511000 -- (-4506.564) (-4485.461) (-4475.313) [-4463.052] * (-4502.374) (-4500.003) [-4463.430] (-4507.605) -- 0:41:50
512000 -- (-4493.648) (-4460.456) (-4516.193) [-4460.671] * (-4517.247) (-4495.850) [-4465.266] (-4505.349) -- 0:41:44
513000 -- (-4547.025) (-4448.292) (-4525.179) [-4474.086] * (-4500.149) (-4505.721) (-4478.050) [-4465.338] -- 0:41:40
514000 -- (-4526.467) [-4447.518] (-4491.499) (-4470.054) * (-4513.950) (-4497.329) [-4469.368] (-4478.363) -- 0:41:35
515000 -- (-4498.832) [-4466.358] (-4505.694) (-4481.994) * (-4495.024) (-4494.466) (-4450.111) [-4468.557] -- 0:41:29
Average standard deviation of split frequencies: 0.022890
516000 -- (-4524.082) (-4463.837) [-4465.942] (-4464.803) * (-4490.311) (-4519.347) (-4462.778) [-4458.753] -- 0:41:24
517000 -- (-4532.249) [-4458.818] (-4475.875) (-4480.003) * (-4482.459) (-4515.122) (-4479.637) [-4462.001] -- 0:41:19
518000 -- (-4554.715) [-4459.690] (-4463.437) (-4504.657) * (-4502.491) (-4511.484) (-4482.471) [-4464.306] -- 0:41:15
519000 -- (-4536.984) (-4447.351) [-4465.517] (-4488.866) * [-4471.569] (-4516.902) (-4505.973) (-4473.360) -- 0:41:09
520000 -- (-4532.520) [-4468.677] (-4476.789) (-4522.584) * (-4475.941) (-4537.415) (-4502.526) [-4466.727] -- 0:41:04
Average standard deviation of split frequencies: 0.022861
521000 -- (-4497.992) (-4466.362) [-4468.727] (-4520.061) * (-4481.087) (-4520.441) (-4510.760) [-4459.486] -- 0:40:59
522000 -- (-4523.820) [-4475.672] (-4498.217) (-4523.329) * (-4493.010) (-4497.124) (-4501.164) [-4447.791] -- 0:40:54
523000 -- (-4480.492) [-4474.700] (-4479.933) (-4509.596) * (-4493.115) (-4529.883) (-4487.991) [-4450.011] -- 0:40:48
524000 -- (-4481.257) [-4469.510] (-4502.444) (-4523.608) * [-4463.612] (-4498.500) (-4479.888) (-4468.476) -- 0:40:43
525000 -- (-4445.239) [-4464.662] (-4505.377) (-4508.444) * [-4468.287] (-4493.604) (-4489.178) (-4488.103) -- 0:40:38
Average standard deviation of split frequencies: 0.023026
526000 -- [-4460.632] (-4484.698) (-4521.010) (-4498.224) * [-4475.258] (-4501.951) (-4514.821) (-4486.307) -- 0:40:33
527000 -- [-4467.228] (-4479.385) (-4510.591) (-4492.970) * [-4477.397] (-4501.782) (-4491.835) (-4458.761) -- 0:40:27
528000 -- [-4482.355] (-4474.123) (-4507.993) (-4521.294) * [-4465.332] (-4462.383) (-4500.320) (-4511.002) -- 0:40:22
529000 -- [-4474.080] (-4487.821) (-4489.701) (-4493.862) * [-4458.036] (-4462.175) (-4518.079) (-4490.796) -- 0:40:17
530000 -- (-4484.913) (-4479.388) [-4466.045] (-4519.942) * [-4455.821] (-4477.660) (-4509.841) (-4485.777) -- 0:40:12
Average standard deviation of split frequencies: 0.023129
531000 -- (-4479.142) (-4495.948) [-4462.850] (-4498.591) * (-4480.387) [-4461.878] (-4499.049) (-4503.635) -- 0:40:07
532000 -- (-4480.594) (-4507.498) [-4465.588] (-4499.443) * (-4490.140) [-4460.664] (-4494.336) (-4522.178) -- 0:40:02
533000 -- (-4494.740) (-4501.459) [-4475.888] (-4516.775) * (-4504.510) [-4483.176] (-4478.982) (-4501.566) -- 0:39:57
534000 -- (-4506.125) (-4502.288) [-4458.404] (-4508.553) * (-4505.892) (-4471.680) [-4454.503] (-4504.385) -- 0:39:51
535000 -- (-4521.020) (-4489.092) [-4466.160] (-4504.531) * (-4507.679) [-4456.261] (-4462.267) (-4505.172) -- 0:39:47
Average standard deviation of split frequencies: 0.023593
536000 -- (-4526.767) (-4515.275) [-4466.723] (-4501.121) * (-4497.679) (-4461.390) [-4449.496] (-4503.309) -- 0:39:42
537000 -- (-4514.818) (-4495.148) [-4468.066] (-4482.564) * (-4486.815) (-4471.085) [-4471.757] (-4494.072) -- 0:39:37
538000 -- (-4521.773) (-4516.351) [-4469.178] (-4469.225) * (-4521.755) (-4474.960) (-4475.575) [-4482.408] -- 0:39:31
539000 -- (-4523.053) (-4499.320) [-4460.640] (-4482.550) * (-4510.949) [-4450.032] (-4478.014) (-4506.589) -- 0:39:26
540000 -- (-4513.311) (-4501.559) [-4452.773] (-4496.599) * (-4509.933) [-4470.930] (-4491.839) (-4484.238) -- 0:39:22
Average standard deviation of split frequencies: 0.024136
541000 -- (-4518.724) (-4506.028) [-4466.712] (-4471.213) * (-4532.825) [-4461.264] (-4487.670) (-4483.078) -- 0:39:16
542000 -- (-4515.909) (-4508.568) (-4479.454) [-4481.498] * (-4511.577) [-4456.131] (-4500.361) (-4469.563) -- 0:39:11
543000 -- (-4495.229) (-4503.667) [-4483.100] (-4482.927) * (-4503.124) [-4457.584] (-4511.090) (-4478.242) -- 0:39:06
544000 -- (-4490.699) (-4495.748) [-4489.329] (-4473.375) * (-4496.962) [-4449.662] (-4502.392) (-4496.619) -- 0:39:01
545000 -- (-4510.115) (-4521.843) (-4492.817) [-4478.254] * (-4492.011) [-4457.730] (-4513.207) (-4484.762) -- 0:38:56
Average standard deviation of split frequencies: 0.024601
546000 -- (-4469.409) (-4519.655) (-4491.753) [-4483.611] * (-4495.257) (-4458.163) (-4526.329) [-4503.714] -- 0:38:51
547000 -- (-4496.422) (-4510.534) [-4470.900] (-4481.999) * [-4466.735] (-4455.739) (-4510.173) (-4476.477) -- 0:38:46
548000 -- (-4516.290) (-4496.156) [-4462.950] (-4477.933) * (-4460.848) [-4443.306] (-4526.230) (-4480.327) -- 0:38:41
549000 -- (-4516.957) (-4496.751) [-4447.106] (-4476.267) * (-4472.861) [-4448.050] (-4519.514) (-4479.452) -- 0:38:35
550000 -- (-4505.666) (-4502.693) [-4467.763] (-4495.560) * (-4510.063) [-4456.166] (-4521.180) (-4483.262) -- 0:38:31
Average standard deviation of split frequencies: 0.024623
551000 -- (-4494.344) [-4480.549] (-4458.664) (-4523.893) * (-4496.104) [-4465.750] (-4481.175) (-4474.938) -- 0:38:26
552000 -- (-4492.411) (-4477.137) [-4468.144] (-4516.645) * (-4524.489) (-4456.909) (-4488.636) [-4463.466] -- 0:38:20
553000 -- (-4493.802) [-4462.424] (-4466.394) (-4523.884) * (-4502.889) (-4475.048) (-4494.642) [-4444.568] -- 0:38:15
554000 -- (-4493.344) [-4471.367] (-4487.923) (-4533.598) * (-4486.488) (-4499.533) (-4502.024) [-4449.264] -- 0:38:10
555000 -- (-4479.802) [-4461.702] (-4492.917) (-4532.535) * (-4488.494) (-4509.199) (-4507.212) [-4471.965] -- 0:38:05
Average standard deviation of split frequencies: 0.024227
556000 -- (-4469.462) [-4465.666] (-4484.047) (-4503.470) * (-4504.594) (-4490.305) (-4492.149) [-4463.677] -- 0:38:00
557000 -- (-4474.876) [-4457.619] (-4498.291) (-4503.327) * (-4513.497) (-4497.627) (-4485.809) [-4459.863] -- 0:37:55
558000 -- (-4501.463) [-4460.695] (-4503.316) (-4487.300) * (-4527.464) (-4480.620) [-4476.497] (-4453.763) -- 0:37:50
559000 -- (-4521.760) [-4452.616] (-4479.484) (-4481.003) * (-4518.283) (-4491.017) [-4485.071] (-4472.076) -- 0:37:44
560000 -- (-4482.426) (-4478.427) (-4501.793) [-4468.198] * (-4486.131) (-4522.064) (-4494.649) [-4456.336] -- 0:37:39
Average standard deviation of split frequencies: 0.023937
561000 -- (-4466.413) (-4489.270) (-4503.633) [-4474.053] * (-4505.424) (-4514.578) (-4477.861) [-4463.914] -- 0:37:34
562000 -- [-4455.325] (-4489.895) (-4518.639) (-4477.221) * (-4542.206) (-4506.873) [-4469.159] (-4468.113) -- 0:37:30
563000 -- [-4463.242] (-4519.298) (-4505.914) (-4473.117) * (-4535.458) (-4512.101) (-4475.265) [-4480.855] -- 0:37:24
564000 -- (-4474.348) (-4501.861) (-4516.187) [-4461.896] * (-4484.797) (-4499.489) (-4477.296) [-4466.294] -- 0:37:19
565000 -- (-4499.188) (-4505.777) (-4515.916) [-4467.696] * (-4488.727) (-4538.915) (-4476.712) [-4458.152] -- 0:37:14
Average standard deviation of split frequencies: 0.023823
566000 -- (-4508.704) (-4517.043) (-4509.450) [-4472.995] * (-4500.545) (-4535.183) (-4496.704) [-4461.950] -- 0:37:09
567000 -- (-4468.286) (-4492.700) (-4529.575) [-4474.041] * (-4493.252) (-4525.963) (-4480.226) [-4487.995] -- 0:37:04
568000 -- (-4473.006) (-4520.626) (-4509.024) [-4461.953] * [-4481.941] (-4534.382) (-4490.179) (-4495.570) -- 0:36:59
569000 -- (-4489.896) (-4489.585) (-4517.989) [-4470.110] * (-4494.994) (-4507.780) (-4482.671) [-4472.588] -- 0:36:54
570000 -- (-4499.129) (-4506.039) (-4509.962) [-4473.447] * [-4485.155] (-4507.334) (-4489.253) (-4499.945) -- 0:36:48
Average standard deviation of split frequencies: 0.023976
571000 -- [-4468.579] (-4501.932) (-4520.547) (-4488.616) * (-4503.283) (-4505.795) [-4458.961] (-4485.577) -- 0:36:44
572000 -- (-4472.206) (-4518.054) (-4491.090) [-4497.978] * (-4507.426) (-4535.831) (-4479.837) [-4466.425] -- 0:36:39
573000 -- [-4471.854] (-4497.051) (-4498.856) (-4511.257) * (-4496.403) (-4519.280) [-4471.754] (-4463.103) -- 0:36:33
574000 -- [-4461.270] (-4473.468) (-4478.445) (-4537.376) * (-4510.020) (-4511.110) (-4497.909) [-4450.669] -- 0:36:28
575000 -- (-4462.470) [-4471.948] (-4490.880) (-4544.202) * (-4495.100) (-4514.581) (-4480.881) [-4449.632] -- 0:36:24
Average standard deviation of split frequencies: 0.024342
576000 -- [-4458.553] (-4484.752) (-4488.708) (-4541.332) * (-4485.539) (-4531.366) (-4487.649) [-4457.079] -- 0:36:18
577000 -- (-4475.976) (-4490.099) [-4481.707] (-4513.578) * (-4497.204) (-4532.075) (-4488.742) [-4461.195] -- 0:36:13
578000 -- (-4487.972) (-4493.668) (-4488.987) [-4471.338] * (-4491.952) (-4542.925) (-4516.603) [-4453.330] -- 0:36:08
579000 -- (-4509.394) (-4502.777) [-4477.701] (-4468.500) * (-4529.707) (-4517.499) (-4490.220) [-4462.449] -- 0:36:03
580000 -- (-4500.537) (-4491.272) (-4492.973) [-4459.973] * (-4512.680) (-4524.655) (-4504.853) [-4461.905] -- 0:35:57
Average standard deviation of split frequencies: 0.024611
581000 -- (-4519.557) (-4502.761) [-4462.798] (-4463.140) * (-4499.204) (-4553.890) (-4508.541) [-4457.426] -- 0:35:53
582000 -- (-4489.864) (-4485.388) [-4461.066] (-4494.868) * (-4505.013) (-4533.321) (-4498.188) [-4441.531] -- 0:35:48
583000 -- (-4491.343) (-4502.342) [-4454.860] (-4490.382) * (-4470.358) (-4540.632) (-4492.890) [-4442.747] -- 0:35:42
584000 -- [-4468.517] (-4542.714) (-4473.656) (-4502.340) * (-4483.887) (-4501.170) (-4494.341) [-4449.047] -- 0:35:37
585000 -- (-4486.220) (-4532.824) [-4468.087] (-4480.357) * (-4464.054) (-4542.844) (-4504.628) [-4441.263] -- 0:35:33
Average standard deviation of split frequencies: 0.024356
586000 -- (-4508.571) (-4507.398) [-4458.260] (-4461.963) * (-4497.928) (-4557.612) (-4511.056) [-4461.286] -- 0:35:27
587000 -- (-4530.660) (-4514.937) (-4477.351) [-4475.746] * (-4493.534) (-4529.201) (-4521.671) [-4435.862] -- 0:35:22
588000 -- (-4505.084) (-4525.970) (-4484.332) [-4466.115] * (-4505.427) (-4499.693) (-4532.045) [-4463.792] -- 0:35:17
589000 -- (-4504.801) (-4521.393) (-4480.972) [-4475.089] * (-4498.607) (-4504.555) (-4540.432) [-4461.222] -- 0:35:12
590000 -- (-4515.832) (-4500.192) [-4498.821] (-4492.403) * (-4509.656) (-4491.848) (-4537.794) [-4463.714] -- 0:35:07
Average standard deviation of split frequencies: 0.024171
591000 -- (-4532.693) (-4491.320) (-4519.689) [-4479.781] * (-4513.666) (-4479.963) (-4519.847) [-4453.793] -- 0:35:02
592000 -- (-4521.224) (-4497.015) (-4504.248) [-4470.041] * (-4526.468) (-4484.221) (-4483.996) [-4459.414] -- 0:34:57
593000 -- (-4488.684) (-4476.215) (-4507.491) [-4469.019] * (-4489.359) (-4488.598) (-4505.639) [-4475.814] -- 0:34:51
594000 -- (-4494.842) [-4460.933] (-4503.711) (-4487.411) * (-4507.487) (-4480.842) (-4495.062) [-4488.632] -- 0:34:46
595000 -- (-4492.729) [-4460.844] (-4503.986) (-4489.522) * (-4500.575) [-4456.933] (-4540.845) (-4471.971) -- 0:34:41
Average standard deviation of split frequencies: 0.023785
596000 -- (-4505.535) (-4459.459) (-4491.295) [-4472.875] * (-4510.588) [-4462.154] (-4524.107) (-4469.850) -- 0:34:36
597000 -- (-4543.367) [-4457.533] (-4500.739) (-4480.057) * (-4506.920) [-4449.770] (-4506.958) (-4464.910) -- 0:34:31
598000 -- (-4505.508) [-4477.273] (-4513.901) (-4470.933) * (-4502.177) (-4465.400) (-4491.531) [-4468.001] -- 0:34:26
599000 -- (-4513.860) [-4454.593] (-4499.785) (-4477.480) * (-4490.112) [-4452.807] (-4516.825) (-4505.231) -- 0:34:21
600000 -- (-4519.479) [-4450.722] (-4483.063) (-4497.322) * (-4473.731) [-4466.483] (-4514.759) (-4522.758) -- 0:34:16
Average standard deviation of split frequencies: 0.022850
601000 -- (-4513.640) [-4462.947] (-4483.708) (-4480.626) * [-4482.057] (-4473.336) (-4510.123) (-4501.596) -- 0:34:10
602000 -- (-4527.239) [-4470.020] (-4466.302) (-4495.815) * [-4467.064] (-4478.963) (-4499.412) (-4511.962) -- 0:34:05
603000 -- (-4500.167) [-4458.464] (-4466.341) (-4480.983) * [-4457.945] (-4473.574) (-4500.832) (-4512.319) -- 0:34:00
604000 -- (-4484.464) (-4466.722) [-4467.231] (-4478.092) * (-4485.852) [-4479.859] (-4499.363) (-4512.758) -- 0:33:55
605000 -- (-4487.254) [-4477.466] (-4492.020) (-4469.068) * [-4487.619] (-4476.463) (-4532.710) (-4514.301) -- 0:33:50
Average standard deviation of split frequencies: 0.022019
606000 -- (-4527.045) (-4476.164) (-4488.278) [-4473.808] * (-4478.026) [-4461.852] (-4511.167) (-4497.877) -- 0:33:45
607000 -- (-4537.179) (-4490.933) (-4491.411) [-4450.454] * (-4503.310) [-4473.864] (-4520.175) (-4476.446) -- 0:33:40
608000 -- (-4529.514) (-4485.657) (-4473.478) [-4466.718] * (-4485.916) [-4482.443] (-4538.257) (-4462.347) -- 0:33:34
609000 -- (-4537.496) (-4483.956) (-4506.864) [-4459.629] * (-4477.579) [-4462.384] (-4516.155) (-4464.249) -- 0:33:30
610000 -- (-4501.489) (-4506.088) (-4502.132) [-4430.060] * [-4471.564] (-4485.608) (-4517.457) (-4486.700) -- 0:33:24
Average standard deviation of split frequencies: 0.021657
611000 -- (-4479.601) (-4500.578) (-4500.450) [-4446.632] * (-4487.154) (-4488.291) (-4552.831) [-4479.627] -- 0:33:19
612000 -- (-4503.730) (-4493.290) (-4529.991) [-4438.337] * [-4467.104] (-4494.075) (-4521.596) (-4487.658) -- 0:33:14
613000 -- (-4506.028) (-4479.010) (-4502.903) [-4448.627] * (-4478.391) [-4474.578] (-4497.100) (-4518.415) -- 0:33:09
614000 -- (-4471.331) (-4487.208) (-4502.334) [-4445.354] * (-4487.226) [-4476.648] (-4494.364) (-4495.122) -- 0:33:04
615000 -- (-4477.653) (-4524.633) (-4499.132) [-4451.959] * (-4480.434) [-4455.184] (-4492.707) (-4478.423) -- 0:32:58
Average standard deviation of split frequencies: 0.021567
616000 -- (-4465.192) (-4535.661) (-4522.276) [-4446.439] * (-4490.779) [-4470.771] (-4494.664) (-4485.222) -- 0:32:53
617000 -- (-4478.772) (-4514.373) (-4498.799) [-4454.324] * (-4505.848) (-4464.693) [-4463.591] (-4512.995) -- 0:32:49
618000 -- (-4484.603) (-4541.609) (-4475.531) [-4472.278] * (-4466.951) [-4455.112] (-4484.770) (-4546.928) -- 0:32:43
619000 -- (-4486.655) (-4552.896) (-4491.688) [-4457.725] * [-4462.103] (-4475.179) (-4487.029) (-4514.622) -- 0:32:38
620000 -- [-4490.423] (-4517.136) (-4482.488) (-4483.228) * (-4488.921) [-4485.060] (-4507.041) (-4543.184) -- 0:32:33
Average standard deviation of split frequencies: 0.020591
621000 -- (-4492.497) [-4475.288] (-4504.991) (-4477.905) * (-4494.065) [-4485.782] (-4492.678) (-4510.420) -- 0:32:28
622000 -- (-4480.072) (-4480.289) (-4509.177) [-4488.967] * (-4522.391) (-4471.910) [-4456.488] (-4502.806) -- 0:32:23
623000 -- (-4491.583) [-4482.993] (-4507.847) (-4480.311) * (-4518.574) (-4485.515) [-4464.527] (-4507.004) -- 0:32:18
624000 -- (-4490.993) (-4494.893) (-4527.022) [-4474.961] * (-4501.919) (-4470.449) [-4464.595] (-4497.566) -- 0:32:13
625000 -- [-4467.246] (-4486.969) (-4528.682) (-4484.093) * (-4493.468) (-4487.945) [-4460.757] (-4510.846) -- 0:32:07
Average standard deviation of split frequencies: 0.020241
626000 -- (-4464.156) (-4507.392) (-4520.450) [-4470.063] * [-4479.959] (-4480.095) (-4467.167) (-4538.292) -- 0:32:02
627000 -- (-4465.762) (-4512.309) (-4518.992) [-4456.434] * (-4491.922) (-4473.787) [-4466.805] (-4517.453) -- 0:31:57
628000 -- (-4477.879) (-4494.344) (-4544.558) [-4463.487] * (-4490.328) (-4490.330) [-4472.523] (-4509.913) -- 0:31:52
629000 -- [-4467.285] (-4510.494) (-4526.909) (-4469.290) * (-4475.916) (-4510.838) [-4487.464] (-4522.738) -- 0:31:47
630000 -- (-4464.235) [-4485.830] (-4512.042) (-4464.700) * (-4494.573) (-4518.492) [-4476.020] (-4538.156) -- 0:31:42
Average standard deviation of split frequencies: 0.019772
631000 -- [-4459.401] (-4498.753) (-4512.602) (-4485.935) * [-4480.758] (-4510.905) (-4469.667) (-4524.315) -- 0:31:37
632000 -- [-4456.686] (-4491.697) (-4514.104) (-4493.025) * (-4466.282) (-4486.227) [-4465.982] (-4541.412) -- 0:31:31
633000 -- [-4456.948] (-4484.743) (-4512.308) (-4489.473) * (-4479.710) [-4460.397] (-4478.730) (-4524.377) -- 0:31:26
634000 -- [-4461.376] (-4481.827) (-4524.090) (-4475.625) * (-4493.097) [-4461.367] (-4494.753) (-4517.686) -- 0:31:21
635000 -- (-4462.804) (-4491.083) (-4509.596) [-4475.646] * (-4484.972) (-4475.124) [-4460.647] (-4514.622) -- 0:31:16
Average standard deviation of split frequencies: 0.019791
636000 -- [-4456.299] (-4478.573) (-4487.240) (-4508.870) * (-4484.007) (-4494.850) [-4459.480] (-4524.515) -- 0:31:11
637000 -- (-4473.148) (-4488.585) [-4484.264] (-4510.412) * (-4503.781) [-4475.011] (-4458.859) (-4547.760) -- 0:31:06
638000 -- (-4487.271) [-4462.953] (-4488.345) (-4495.639) * (-4512.179) (-4472.644) [-4474.842] (-4514.220) -- 0:31:01
639000 -- (-4511.713) [-4454.559] (-4503.399) (-4486.595) * (-4483.849) [-4482.935] (-4491.251) (-4507.001) -- 0:30:55
640000 -- (-4504.578) (-4459.587) (-4494.991) [-4480.678] * (-4485.617) (-4521.227) [-4483.151] (-4514.007) -- 0:30:50
Average standard deviation of split frequencies: 0.019662
641000 -- (-4502.888) (-4476.819) (-4485.532) [-4459.581] * [-4470.998] (-4505.624) (-4479.814) (-4485.486) -- 0:30:45
642000 -- (-4525.034) (-4486.201) [-4480.748] (-4481.891) * (-4469.227) (-4501.523) [-4488.395] (-4476.772) -- 0:30:40
643000 -- (-4548.905) (-4480.260) [-4483.945] (-4461.366) * (-4484.824) (-4498.644) (-4500.473) [-4470.678] -- 0:30:34
644000 -- (-4523.544) (-4487.187) [-4469.606] (-4487.723) * (-4493.723) (-4506.907) (-4482.866) [-4462.035] -- 0:30:30
645000 -- (-4494.928) (-4473.365) [-4486.916] (-4482.733) * (-4509.649) (-4493.234) (-4463.290) [-4442.801] -- 0:30:25
Average standard deviation of split frequencies: 0.019286
646000 -- (-4499.827) (-4479.020) (-4503.300) [-4481.322] * (-4526.299) (-4492.144) (-4499.065) [-4449.672] -- 0:30:19
647000 -- (-4484.684) (-4503.981) (-4487.862) [-4461.137] * (-4518.977) [-4477.494] (-4489.836) (-4477.941) -- 0:30:14
648000 -- [-4468.036] (-4518.062) (-4493.931) (-4473.242) * (-4529.889) [-4448.848] (-4530.437) (-4474.000) -- 0:30:09
649000 -- (-4465.677) (-4527.757) (-4491.908) [-4468.828] * (-4490.929) [-4442.706] (-4505.047) (-4468.612) -- 0:30:04
650000 -- [-4459.854] (-4495.779) (-4506.888) (-4469.580) * (-4520.837) [-4443.872] (-4481.444) (-4500.858) -- 0:29:58
Average standard deviation of split frequencies: 0.018889
651000 -- [-4459.587] (-4489.144) (-4520.862) (-4440.663) * (-4509.484) [-4448.906] (-4470.557) (-4493.343) -- 0:29:54
652000 -- (-4473.529) (-4494.093) (-4484.830) [-4450.788] * (-4511.035) [-4448.124] (-4483.026) (-4477.416) -- 0:29:49
653000 -- (-4484.216) (-4523.745) (-4469.150) [-4462.370] * (-4507.444) [-4454.548] (-4500.261) (-4496.430) -- 0:29:43
654000 -- (-4510.511) (-4472.869) (-4475.342) [-4462.259] * (-4502.091) [-4459.963] (-4491.007) (-4493.905) -- 0:29:38
655000 -- (-4499.480) (-4482.689) (-4489.240) [-4466.159] * (-4517.673) [-4432.681] (-4488.447) (-4494.409) -- 0:29:33
Average standard deviation of split frequencies: 0.018929
656000 -- (-4500.463) (-4501.099) (-4472.183) [-4456.946] * (-4505.581) [-4451.405] (-4514.149) (-4482.461) -- 0:29:28
657000 -- (-4472.165) (-4483.149) (-4491.705) [-4470.829] * [-4478.877] (-4468.387) (-4511.964) (-4469.041) -- 0:29:23
658000 -- [-4461.573] (-4506.180) (-4484.348) (-4476.424) * [-4478.728] (-4516.292) (-4544.327) (-4491.476) -- 0:29:17
659000 -- [-4468.269] (-4515.751) (-4470.603) (-4488.764) * (-4469.465) (-4524.255) (-4528.180) [-4471.023] -- 0:29:13
660000 -- [-4470.178] (-4504.121) (-4466.753) (-4501.619) * (-4465.954) (-4515.549) (-4502.671) [-4477.415] -- 0:29:07
Average standard deviation of split frequencies: 0.019042
661000 -- (-4492.058) (-4487.574) [-4475.329] (-4498.639) * [-4466.443] (-4527.541) (-4468.521) (-4478.755) -- 0:29:02
662000 -- (-4479.557) (-4503.423) [-4474.310] (-4499.806) * [-4461.337] (-4519.272) (-4465.169) (-4489.470) -- 0:28:57
663000 -- (-4477.655) (-4503.184) [-4490.520] (-4521.980) * [-4474.377] (-4501.825) (-4470.590) (-4471.255) -- 0:28:52
664000 -- [-4472.560] (-4525.805) (-4493.678) (-4499.976) * [-4464.848] (-4534.110) (-4474.611) (-4487.167) -- 0:28:47
665000 -- [-4468.448] (-4514.935) (-4498.055) (-4513.446) * (-4483.064) (-4531.707) [-4464.336] (-4475.083) -- 0:28:42
Average standard deviation of split frequencies: 0.019311
666000 -- [-4455.120] (-4524.490) (-4510.162) (-4482.308) * (-4498.430) (-4532.503) [-4474.098] (-4479.105) -- 0:28:37
667000 -- [-4462.538] (-4517.119) (-4490.549) (-4482.647) * (-4498.947) (-4514.139) (-4492.342) [-4485.003] -- 0:28:31
668000 -- [-4459.354] (-4526.859) (-4468.597) (-4492.191) * (-4483.199) [-4474.449] (-4477.188) (-4509.890) -- 0:28:26
669000 -- [-4436.121] (-4540.232) (-4455.252) (-4487.967) * (-4496.002) [-4476.718] (-4488.295) (-4490.954) -- 0:28:21
670000 -- [-4458.984] (-4504.899) (-4482.544) (-4486.716) * (-4484.491) [-4462.140] (-4505.228) (-4483.898) -- 0:28:16
Average standard deviation of split frequencies: 0.019408
671000 -- [-4458.150] (-4487.002) (-4485.837) (-4480.357) * (-4512.337) (-4485.941) (-4491.440) [-4464.309] -- 0:28:11
672000 -- (-4473.455) (-4491.180) (-4475.676) [-4478.317] * (-4491.347) [-4460.682] (-4511.164) (-4478.134) -- 0:28:06
673000 -- (-4505.423) (-4502.373) [-4465.062] (-4485.192) * (-4473.223) (-4465.695) (-4507.284) [-4457.905] -- 0:28:01
674000 -- (-4481.193) (-4509.474) [-4469.747] (-4499.858) * (-4457.894) (-4487.833) (-4515.621) [-4471.077] -- 0:27:55
675000 -- (-4484.151) (-4503.595) [-4458.687] (-4496.751) * (-4469.414) (-4497.171) (-4519.234) [-4478.148] -- 0:27:51
Average standard deviation of split frequencies: 0.019143
676000 -- (-4524.131) (-4497.886) [-4468.594] (-4504.514) * (-4472.438) (-4511.993) (-4510.081) [-4476.962] -- 0:27:46
677000 -- (-4484.876) [-4471.256] (-4471.119) (-4493.456) * (-4481.356) (-4518.794) (-4497.753) [-4462.821] -- 0:27:41
678000 -- [-4486.013] (-4472.366) (-4481.703) (-4497.451) * (-4470.263) (-4519.959) (-4502.914) [-4458.783] -- 0:27:36
679000 -- [-4476.712] (-4463.552) (-4493.584) (-4542.189) * [-4468.210] (-4531.472) (-4493.433) (-4476.581) -- 0:27:30
680000 -- [-4484.565] (-4504.450) (-4484.387) (-4531.639) * [-4455.871] (-4504.483) (-4509.405) (-4494.224) -- 0:27:26
Average standard deviation of split frequencies: 0.019107
681000 -- (-4497.719) (-4507.751) [-4485.570] (-4525.544) * [-4447.814] (-4532.908) (-4507.491) (-4473.125) -- 0:27:20
682000 -- [-4490.739] (-4496.132) (-4467.548) (-4511.629) * [-4459.561] (-4506.034) (-4522.677) (-4480.019) -- 0:27:15
683000 -- (-4478.835) (-4507.201) [-4460.449] (-4491.634) * [-4467.793] (-4522.799) (-4501.147) (-4495.822) -- 0:27:10
684000 -- (-4488.959) (-4498.505) [-4458.815] (-4501.429) * [-4454.253] (-4535.920) (-4496.134) (-4476.051) -- 0:27:05
685000 -- (-4455.012) (-4512.303) [-4459.396] (-4512.530) * [-4454.890] (-4496.014) (-4500.625) (-4481.938) -- 0:27:00
Average standard deviation of split frequencies: 0.018504
686000 -- (-4463.083) (-4497.388) [-4465.046] (-4518.294) * [-4454.358] (-4512.195) (-4507.714) (-4479.212) -- 0:26:55
687000 -- [-4457.343] (-4515.099) (-4464.558) (-4497.206) * [-4453.424] (-4503.897) (-4500.979) (-4474.399) -- 0:26:50
688000 -- (-4483.270) (-4508.912) [-4454.380] (-4498.221) * (-4469.202) (-4512.469) (-4509.952) [-4479.380] -- 0:26:45
689000 -- (-4479.012) (-4541.723) [-4465.399] (-4511.963) * [-4460.692] (-4501.683) (-4519.533) (-4480.593) -- 0:26:40
690000 -- [-4482.991] (-4513.007) (-4474.927) (-4499.610) * (-4449.623) (-4522.982) (-4532.542) [-4463.184] -- 0:26:34
Average standard deviation of split frequencies: 0.017680
691000 -- (-4487.182) (-4487.566) [-4473.021] (-4497.781) * (-4470.183) (-4507.564) (-4522.833) [-4463.976] -- 0:26:29
692000 -- (-4505.637) (-4507.214) [-4452.687] (-4486.708) * (-4481.228) (-4484.717) (-4538.628) [-4474.348] -- 0:26:24
693000 -- (-4501.838) (-4508.180) [-4458.915] (-4485.847) * (-4464.212) (-4476.279) (-4500.805) [-4462.322] -- 0:26:19
694000 -- (-4511.319) [-4497.498] (-4470.713) (-4487.792) * (-4483.869) (-4493.657) (-4505.785) [-4475.041] -- 0:26:14
695000 -- (-4511.235) (-4502.345) [-4483.869] (-4460.023) * (-4500.017) (-4490.673) (-4527.567) [-4458.727] -- 0:26:09
Average standard deviation of split frequencies: 0.017251
696000 -- (-4491.478) (-4491.603) (-4482.377) [-4467.869] * (-4486.282) (-4477.891) (-4544.645) [-4451.721] -- 0:26:04
697000 -- (-4527.611) (-4477.331) (-4487.999) [-4462.037] * (-4521.063) (-4476.057) (-4517.339) [-4467.848] -- 0:25:58
698000 -- (-4519.072) (-4491.176) (-4502.076) [-4487.950] * (-4531.912) (-4495.347) (-4495.279) [-4457.605] -- 0:25:53
699000 -- (-4524.637) [-4458.878] (-4481.904) (-4522.873) * (-4529.972) (-4491.032) (-4501.093) [-4444.238] -- 0:25:48
700000 -- [-4478.731] (-4475.283) (-4498.762) (-4497.715) * (-4502.298) (-4486.633) (-4463.864) [-4439.766] -- 0:25:43
Average standard deviation of split frequencies: 0.017338
701000 -- (-4483.786) [-4483.377] (-4508.480) (-4505.830) * (-4502.552) (-4499.201) (-4469.955) [-4430.878] -- 0:25:38
702000 -- [-4460.582] (-4501.882) (-4481.619) (-4522.492) * (-4485.207) (-4492.757) (-4509.759) [-4443.139] -- 0:25:32
703000 -- (-4461.884) (-4518.027) [-4483.768] (-4507.568) * (-4487.727) (-4493.299) (-4494.086) [-4458.958] -- 0:25:27
704000 -- (-4455.026) (-4551.479) [-4495.569] (-4493.926) * (-4472.150) [-4478.302] (-4492.106) (-4466.226) -- 0:25:22
705000 -- [-4471.048] (-4542.542) (-4497.889) (-4499.008) * (-4479.226) (-4466.291) (-4514.899) [-4447.892] -- 0:25:17
Average standard deviation of split frequencies: 0.016941
706000 -- [-4453.172] (-4521.508) (-4479.109) (-4491.289) * (-4478.265) (-4469.194) (-4515.802) [-4458.042] -- 0:25:12
707000 -- [-4471.744] (-4521.084) (-4492.826) (-4487.102) * (-4492.223) (-4485.550) (-4529.030) [-4443.085] -- 0:25:07
708000 -- [-4454.703] (-4497.284) (-4512.016) (-4468.674) * (-4477.187) [-4475.967] (-4508.733) (-4452.127) -- 0:25:02
709000 -- (-4470.644) [-4477.992] (-4482.486) (-4474.473) * (-4488.260) (-4492.886) (-4531.307) [-4480.796] -- 0:24:56
710000 -- (-4478.501) (-4499.767) (-4476.883) [-4461.499] * (-4486.215) (-4492.667) (-4525.959) [-4466.920] -- 0:24:51
Average standard deviation of split frequencies: 0.017017
711000 -- (-4498.873) (-4485.671) [-4484.658] (-4489.514) * (-4483.725) (-4512.880) (-4514.381) [-4463.728] -- 0:24:46
712000 -- (-4491.986) (-4499.052) (-4488.906) [-4466.071] * (-4496.896) (-4495.881) (-4530.466) [-4475.282] -- 0:24:41
713000 -- (-4497.991) (-4498.190) (-4480.543) [-4438.889] * (-4517.133) [-4482.057] (-4524.605) (-4479.307) -- 0:24:36
714000 -- (-4486.981) (-4515.730) (-4482.906) [-4447.786] * (-4502.351) (-4499.788) (-4507.805) [-4454.669] -- 0:24:31
715000 -- (-4485.147) (-4515.980) (-4502.542) [-4452.126] * (-4495.307) (-4501.671) (-4500.875) [-4468.454] -- 0:24:26
Average standard deviation of split frequencies: 0.016522
716000 -- (-4499.955) (-4514.483) (-4467.109) [-4466.644] * (-4492.916) (-4506.211) (-4491.050) [-4476.134] -- 0:24:20
717000 -- (-4536.773) (-4487.002) (-4482.066) [-4465.524] * (-4504.813) [-4466.294] (-4516.056) (-4482.111) -- 0:24:15
718000 -- (-4502.709) (-4479.816) (-4484.959) [-4447.958] * (-4515.031) (-4464.797) (-4507.455) [-4469.625] -- 0:24:10
719000 -- (-4518.819) (-4466.496) (-4487.502) [-4471.123] * (-4506.767) (-4468.590) (-4490.775) [-4478.846] -- 0:24:05
720000 -- (-4479.001) (-4477.760) (-4473.082) [-4460.066] * (-4481.061) [-4457.351] (-4527.746) (-4482.185) -- 0:24:00
Average standard deviation of split frequencies: 0.016149
721000 -- (-4467.565) (-4474.230) (-4519.900) [-4453.667] * (-4509.609) [-4458.433] (-4531.381) (-4490.528) -- 0:23:55
722000 -- [-4455.175] (-4463.958) (-4501.131) (-4479.208) * (-4517.170) [-4461.814] (-4503.300) (-4477.529) -- 0:23:50
723000 -- (-4459.807) [-4490.816] (-4519.523) (-4494.330) * (-4549.104) [-4470.993] (-4500.233) (-4473.609) -- 0:23:45
724000 -- [-4454.942] (-4491.486) (-4500.848) (-4490.842) * (-4518.587) [-4469.317] (-4482.892) (-4500.752) -- 0:23:40
725000 -- [-4466.716] (-4504.665) (-4527.040) (-4487.650) * (-4524.385) [-4467.589] (-4469.528) (-4501.744) -- 0:23:34
Average standard deviation of split frequencies: 0.015826
726000 -- [-4460.490] (-4508.210) (-4501.582) (-4502.751) * (-4536.983) (-4460.133) (-4468.221) [-4491.461] -- 0:23:30
727000 -- [-4446.349] (-4502.351) (-4480.111) (-4506.520) * (-4548.905) (-4461.273) (-4478.508) [-4471.700] -- 0:23:24
728000 -- [-4473.973] (-4477.775) (-4481.909) (-4518.507) * (-4501.548) [-4476.369] (-4475.887) (-4486.173) -- 0:23:19
729000 -- (-4480.870) [-4459.319] (-4512.988) (-4497.976) * (-4489.570) [-4456.719] (-4505.795) (-4476.732) -- 0:23:14
730000 -- [-4482.546] (-4487.459) (-4483.436) (-4520.483) * (-4496.227) [-4458.890] (-4505.992) (-4497.297) -- 0:23:09
Average standard deviation of split frequencies: 0.015590
731000 -- (-4486.212) [-4466.371] (-4511.188) (-4511.652) * (-4483.599) [-4453.624] (-4494.737) (-4523.446) -- 0:23:04
732000 -- [-4447.422] (-4474.487) (-4507.134) (-4494.281) * (-4465.016) [-4452.053] (-4482.727) (-4514.953) -- 0:22:59
733000 -- [-4451.012] (-4474.719) (-4500.577) (-4523.361) * (-4503.551) (-4470.816) [-4460.265] (-4508.079) -- 0:22:53
734000 -- [-4442.874] (-4488.515) (-4504.437) (-4502.060) * [-4454.793] (-4468.334) (-4487.744) (-4528.213) -- 0:22:48
735000 -- [-4441.589] (-4484.723) (-4494.161) (-4517.855) * [-4440.813] (-4466.501) (-4488.703) (-4509.916) -- 0:22:43
Average standard deviation of split frequencies: 0.015141
736000 -- [-4455.609] (-4497.824) (-4513.042) (-4509.925) * [-4447.800] (-4461.716) (-4505.465) (-4512.783) -- 0:22:38
737000 -- [-4465.297] (-4496.671) (-4496.536) (-4511.592) * [-4470.212] (-4469.082) (-4514.747) (-4530.342) -- 0:22:33
738000 -- [-4467.601] (-4491.521) (-4481.811) (-4528.548) * (-4490.033) [-4468.494] (-4502.207) (-4513.534) -- 0:22:28
739000 -- [-4475.081] (-4497.065) (-4490.097) (-4510.841) * (-4478.403) [-4450.992] (-4499.789) (-4486.005) -- 0:22:23
740000 -- [-4454.843] (-4478.367) (-4479.797) (-4522.787) * (-4486.887) [-4443.947] (-4497.957) (-4505.335) -- 0:22:18
Average standard deviation of split frequencies: 0.014647
741000 -- (-4468.445) [-4473.082] (-4496.779) (-4505.818) * (-4482.703) [-4466.242] (-4512.142) (-4521.764) -- 0:22:13
742000 -- [-4459.316] (-4468.859) (-4497.381) (-4521.673) * (-4472.529) [-4466.899] (-4538.831) (-4491.611) -- 0:22:07
743000 -- (-4481.001) [-4452.747] (-4528.317) (-4506.176) * (-4462.063) [-4467.068] (-4505.727) (-4512.764) -- 0:22:02
744000 -- (-4479.029) [-4466.069] (-4497.022) (-4522.821) * [-4459.842] (-4466.266) (-4514.146) (-4489.948) -- 0:21:57
745000 -- (-4500.651) [-4484.136] (-4516.301) (-4518.540) * [-4463.036] (-4460.114) (-4490.595) (-4496.055) -- 0:21:52
Average standard deviation of split frequencies: 0.014565
746000 -- (-4525.600) [-4465.795] (-4497.570) (-4531.088) * (-4464.667) [-4461.585] (-4495.940) (-4526.293) -- 0:21:47
747000 -- (-4532.432) [-4457.813] (-4494.712) (-4509.654) * (-4462.188) [-4454.857] (-4491.532) (-4504.488) -- 0:21:42
748000 -- (-4524.661) [-4444.395] (-4490.552) (-4521.156) * (-4485.167) [-4462.710] (-4478.187) (-4500.285) -- 0:21:37
749000 -- (-4495.615) [-4456.581] (-4474.246) (-4506.372) * (-4509.495) [-4453.305] (-4485.383) (-4499.520) -- 0:21:31
750000 -- (-4493.318) [-4474.998] (-4482.244) (-4519.196) * (-4509.816) [-4454.281] (-4465.354) (-4486.035) -- 0:21:26
Average standard deviation of split frequencies: 0.014424
751000 -- (-4521.377) [-4468.524] (-4490.819) (-4484.311) * (-4501.391) [-4453.487] (-4457.263) (-4516.693) -- 0:21:21
752000 -- (-4542.464) (-4464.379) [-4472.267] (-4492.183) * (-4530.397) (-4470.174) [-4464.433] (-4515.521) -- 0:21:16
753000 -- (-4512.817) [-4471.130] (-4472.792) (-4489.841) * (-4524.582) (-4462.667) [-4454.470] (-4482.148) -- 0:21:11
754000 -- (-4523.418) [-4467.186] (-4493.177) (-4498.379) * (-4523.165) [-4454.942] (-4464.695) (-4489.775) -- 0:21:06
755000 -- (-4525.573) [-4451.170] (-4463.971) (-4495.332) * (-4528.253) (-4462.657) [-4456.741] (-4480.653) -- 0:21:01
Average standard deviation of split frequencies: 0.014436
756000 -- (-4513.092) (-4463.738) [-4470.978] (-4502.022) * (-4526.420) (-4456.943) [-4470.228] (-4495.157) -- 0:20:56
757000 -- (-4523.301) [-4470.813] (-4475.322) (-4495.314) * (-4535.441) [-4466.571] (-4492.885) (-4494.166) -- 0:20:50
758000 -- (-4506.135) [-4468.330] (-4477.984) (-4530.396) * (-4502.058) [-4459.078] (-4486.370) (-4487.395) -- 0:20:45
759000 -- (-4494.488) [-4464.800] (-4487.250) (-4531.580) * (-4510.772) [-4457.255] (-4483.412) (-4494.335) -- 0:20:40
760000 -- (-4502.250) (-4471.358) [-4468.883] (-4528.146) * (-4497.433) [-4459.678] (-4479.698) (-4515.933) -- 0:20:35
Average standard deviation of split frequencies: 0.014372
761000 -- (-4510.984) [-4447.235] (-4480.589) (-4541.153) * (-4506.063) [-4471.423] (-4474.885) (-4513.481) -- 0:20:30
762000 -- (-4497.925) (-4466.335) [-4460.998] (-4529.881) * (-4486.537) [-4456.675] (-4487.637) (-4534.028) -- 0:20:25
763000 -- (-4484.935) (-4473.029) [-4468.757] (-4496.141) * (-4490.916) [-4463.053] (-4482.694) (-4538.014) -- 0:20:20
764000 -- (-4526.624) (-4484.571) [-4464.147] (-4503.621) * (-4474.640) [-4463.041] (-4474.988) (-4526.369) -- 0:20:14
765000 -- (-4528.054) [-4472.314] (-4468.265) (-4496.162) * (-4513.184) [-4482.766] (-4475.536) (-4524.213) -- 0:20:09
Average standard deviation of split frequencies: 0.014036
766000 -- (-4512.402) (-4469.752) [-4472.533] (-4489.682) * (-4497.607) [-4463.789] (-4483.265) (-4519.074) -- 0:20:04
767000 -- (-4506.166) [-4477.987] (-4462.358) (-4493.291) * (-4486.494) [-4452.538] (-4469.300) (-4535.491) -- 0:19:59
768000 -- (-4497.335) [-4476.372] (-4480.135) (-4500.030) * (-4484.055) [-4472.513] (-4486.069) (-4516.114) -- 0:19:54
769000 -- (-4480.277) [-4468.041] (-4506.428) (-4505.851) * (-4504.431) [-4469.240] (-4462.829) (-4513.879) -- 0:19:48
770000 -- [-4483.695] (-4455.866) (-4517.887) (-4490.602) * (-4496.647) (-4463.359) [-4454.730] (-4499.233) -- 0:19:43
Average standard deviation of split frequencies: 0.014112
771000 -- (-4514.990) [-4473.676] (-4495.231) (-4505.804) * (-4498.056) (-4477.277) [-4446.377] (-4501.340) -- 0:19:38
772000 -- (-4470.397) [-4472.596] (-4501.874) (-4507.259) * (-4520.104) (-4492.120) [-4478.517] (-4477.503) -- 0:19:33
773000 -- [-4462.502] (-4483.243) (-4530.678) (-4497.197) * (-4533.591) (-4497.466) [-4468.476] (-4487.412) -- 0:19:28
774000 -- (-4468.089) [-4460.115] (-4533.154) (-4491.050) * (-4532.867) [-4481.860] (-4462.073) (-4490.070) -- 0:19:23
775000 -- (-4485.321) [-4458.010] (-4524.358) (-4482.748) * (-4510.729) (-4467.764) [-4468.412] (-4510.437) -- 0:19:18
Average standard deviation of split frequencies: 0.013949
776000 -- [-4481.333] (-4483.023) (-4489.625) (-4493.766) * (-4506.210) [-4476.168] (-4492.099) (-4497.621) -- 0:19:12
777000 -- (-4473.494) (-4500.713) (-4479.020) [-4481.199] * (-4516.047) (-4490.207) [-4478.476] (-4508.622) -- 0:19:08
778000 -- (-4496.842) (-4468.249) (-4504.756) [-4456.901] * (-4499.860) (-4473.064) (-4502.896) [-4486.607] -- 0:19:02
779000 -- (-4485.660) (-4473.109) (-4525.439) [-4455.618] * (-4501.359) [-4474.788] (-4494.117) (-4494.414) -- 0:18:57
780000 -- (-4526.549) [-4460.946] (-4519.283) (-4456.918) * (-4508.578) [-4460.750] (-4538.281) (-4502.191) -- 0:18:52
Average standard deviation of split frequencies: 0.013511
781000 -- (-4517.205) [-4458.803] (-4508.069) (-4471.518) * (-4504.855) [-4460.132] (-4531.511) (-4502.985) -- 0:18:47
782000 -- (-4525.250) (-4482.125) [-4472.537] (-4462.553) * [-4476.817] (-4487.016) (-4525.856) (-4496.496) -- 0:18:42
783000 -- (-4550.223) [-4465.933] (-4487.692) (-4473.747) * (-4480.848) [-4484.458] (-4517.877) (-4501.234) -- 0:18:36
784000 -- (-4524.363) (-4490.445) (-4492.893) [-4464.113] * (-4485.186) [-4474.131] (-4527.438) (-4502.394) -- 0:18:31
785000 -- (-4526.304) (-4507.196) (-4514.384) [-4460.316] * (-4508.539) [-4473.033] (-4533.849) (-4497.612) -- 0:18:26
Average standard deviation of split frequencies: 0.013210
786000 -- (-4498.032) (-4517.695) (-4481.542) [-4465.897] * (-4545.660) [-4464.332] (-4517.586) (-4499.823) -- 0:18:21
787000 -- (-4509.626) (-4498.447) (-4472.683) [-4447.270] * (-4522.351) [-4459.874] (-4512.847) (-4510.557) -- 0:18:16
788000 -- (-4504.155) (-4485.871) (-4474.814) [-4451.312] * (-4536.353) [-4490.841] (-4498.183) (-4485.391) -- 0:18:11
789000 -- (-4491.246) (-4495.713) (-4490.338) [-4436.619] * (-4535.047) [-4479.913] (-4503.640) (-4505.572) -- 0:18:06
790000 -- (-4471.861) (-4486.695) (-4502.501) [-4423.918] * (-4511.749) [-4464.441] (-4507.649) (-4487.345) -- 0:18:00
Average standard deviation of split frequencies: 0.013028
791000 -- (-4486.910) (-4512.656) (-4507.581) [-4460.287] * (-4520.382) [-4477.781] (-4485.543) (-4508.858) -- 0:17:55
792000 -- [-4468.795] (-4507.583) (-4505.105) (-4461.427) * (-4518.549) [-4466.414] (-4482.265) (-4501.119) -- 0:17:50
793000 -- (-4480.527) (-4503.913) (-4485.182) [-4454.829] * (-4509.337) [-4461.335] (-4466.573) (-4475.408) -- 0:17:45
794000 -- (-4503.299) (-4496.871) (-4475.515) [-4470.467] * (-4518.797) [-4477.853] (-4493.151) (-4479.407) -- 0:17:40
795000 -- (-4479.006) (-4494.932) (-4481.512) [-4447.073] * (-4520.223) (-4486.570) [-4481.972] (-4497.947) -- 0:17:35
Average standard deviation of split frequencies: 0.012947
796000 -- (-4459.951) (-4480.714) (-4486.774) [-4453.276] * (-4511.188) (-4490.956) [-4484.382] (-4481.314) -- 0:17:30
797000 -- (-4475.604) (-4483.561) (-4530.592) [-4470.764] * (-4526.365) (-4490.180) (-4496.321) [-4473.773] -- 0:17:25
798000 -- (-4498.699) [-4472.414] (-4499.841) (-4497.248) * (-4508.327) (-4483.568) [-4472.178] (-4473.701) -- 0:17:19
799000 -- (-4510.679) (-4473.337) (-4502.096) [-4462.147] * (-4512.437) (-4497.143) (-4469.227) [-4469.536] -- 0:17:14
800000 -- (-4516.765) (-4478.673) (-4491.443) [-4482.547] * (-4491.777) (-4510.219) [-4467.475] (-4490.272) -- 0:17:09
Average standard deviation of split frequencies: 0.012616
801000 -- (-4519.566) (-4495.708) (-4476.239) [-4489.308] * (-4480.546) (-4486.022) [-4457.447] (-4490.753) -- 0:17:04
802000 -- (-4492.598) [-4464.597] (-4477.396) (-4525.047) * (-4463.768) (-4502.790) [-4455.229] (-4484.905) -- 0:16:59
803000 -- (-4511.811) (-4467.224) [-4476.299] (-4487.704) * [-4455.813] (-4502.335) (-4459.203) (-4464.420) -- 0:16:54
804000 -- (-4484.517) [-4471.046] (-4475.028) (-4501.843) * [-4471.285] (-4504.256) (-4491.643) (-4474.791) -- 0:16:49
805000 -- (-4466.415) (-4472.152) [-4459.421] (-4520.395) * [-4461.473] (-4476.333) (-4490.865) (-4509.801) -- 0:16:43
Average standard deviation of split frequencies: 0.012617
806000 -- (-4462.850) [-4451.211] (-4473.791) (-4517.360) * [-4460.089] (-4508.166) (-4491.041) (-4516.528) -- 0:16:38
807000 -- (-4461.085) (-4483.663) [-4460.724] (-4493.302) * [-4489.467] (-4499.643) (-4475.287) (-4486.610) -- 0:16:33
808000 -- (-4489.746) (-4490.163) [-4467.578] (-4487.636) * (-4460.935) (-4507.351) [-4484.119] (-4516.207) -- 0:16:28
809000 -- (-4465.802) (-4508.770) [-4471.976] (-4507.805) * [-4462.496] (-4513.889) (-4506.752) (-4531.810) -- 0:16:23
810000 -- (-4468.583) (-4501.317) [-4469.257] (-4503.035) * [-4473.696] (-4489.449) (-4487.339) (-4520.773) -- 0:16:18
Average standard deviation of split frequencies: 0.012674
811000 -- [-4447.568] (-4481.846) (-4493.211) (-4499.224) * (-4484.588) (-4518.474) [-4483.754] (-4507.767) -- 0:16:12
812000 -- [-4444.389] (-4484.080) (-4494.093) (-4485.661) * (-4505.819) (-4506.276) [-4502.623] (-4513.532) -- 0:16:07
813000 -- [-4445.349] (-4491.895) (-4490.238) (-4541.830) * (-4521.385) (-4474.246) [-4469.836] (-4508.626) -- 0:16:02
814000 -- [-4464.552] (-4489.288) (-4478.002) (-4509.282) * (-4516.840) [-4463.670] (-4479.253) (-4486.983) -- 0:15:57
815000 -- [-4465.560] (-4510.298) (-4473.236) (-4504.477) * (-4489.824) (-4495.307) [-4457.850] (-4489.075) -- 0:15:52
Average standard deviation of split frequencies: 0.012531
816000 -- (-4466.405) (-4491.890) [-4470.238] (-4504.687) * (-4483.861) (-4504.478) [-4455.611] (-4472.396) -- 0:15:47
817000 -- [-4465.655] (-4491.755) (-4481.860) (-4493.291) * (-4498.219) (-4517.977) [-4469.522] (-4470.540) -- 0:15:41
818000 -- [-4470.695] (-4492.901) (-4488.477) (-4488.203) * (-4524.263) (-4535.672) (-4468.197) [-4473.612] -- 0:15:36
819000 -- [-4476.573] (-4491.186) (-4493.268) (-4498.913) * (-4519.808) (-4499.757) (-4479.141) [-4467.001] -- 0:15:31
820000 -- (-4465.046) [-4479.779] (-4490.932) (-4472.953) * (-4507.439) [-4490.641] (-4472.644) (-4472.923) -- 0:15:26
Average standard deviation of split frequencies: 0.012369
821000 -- [-4477.570] (-4508.878) (-4489.792) (-4485.693) * (-4529.627) (-4491.962) [-4449.774] (-4498.041) -- 0:15:21
822000 -- [-4461.497] (-4494.558) (-4503.217) (-4508.688) * (-4500.703) (-4503.466) [-4462.219] (-4481.121) -- 0:15:16
823000 -- (-4474.238) (-4489.525) (-4523.191) [-4486.123] * (-4514.168) (-4517.201) [-4465.530] (-4484.603) -- 0:15:11
824000 -- (-4491.467) [-4467.074] (-4502.839) (-4510.116) * (-4501.490) (-4535.366) [-4456.537] (-4481.265) -- 0:15:05
825000 -- (-4523.937) [-4460.259] (-4473.040) (-4505.706) * (-4494.009) (-4544.950) [-4456.539] (-4497.425) -- 0:15:00
Average standard deviation of split frequencies: 0.012108
826000 -- (-4511.230) [-4474.534] (-4506.990) (-4488.568) * [-4471.635] (-4559.063) (-4466.614) (-4494.991) -- 0:14:55
827000 -- (-4503.762) [-4476.544] (-4472.861) (-4485.759) * [-4459.064] (-4513.315) (-4457.571) (-4482.321) -- 0:14:50
828000 -- [-4461.870] (-4482.166) (-4480.527) (-4511.067) * [-4470.654] (-4514.547) (-4452.414) (-4493.456) -- 0:14:45
829000 -- (-4485.517) (-4513.319) [-4489.800] (-4508.896) * (-4474.163) (-4506.521) [-4456.760] (-4494.801) -- 0:14:40
830000 -- (-4528.961) (-4496.678) [-4474.960] (-4481.126) * (-4480.289) (-4512.481) (-4455.685) [-4457.423] -- 0:14:34
Average standard deviation of split frequencies: 0.012209
831000 -- (-4529.595) [-4490.069] (-4483.680) (-4471.571) * (-4470.229) (-4500.725) [-4468.429] (-4477.711) -- 0:14:29
832000 -- (-4515.397) (-4503.197) (-4492.816) [-4462.563] * (-4481.207) (-4525.452) [-4465.973] (-4471.104) -- 0:14:24
833000 -- (-4516.288) (-4485.124) (-4484.263) [-4460.213] * (-4484.569) (-4553.834) [-4466.155] (-4483.325) -- 0:14:19
834000 -- (-4558.441) (-4499.631) (-4487.879) [-4452.790] * (-4500.326) (-4540.873) [-4478.033] (-4470.148) -- 0:14:14
835000 -- (-4530.624) (-4497.366) (-4484.839) [-4446.838] * (-4485.409) (-4514.602) (-4510.253) [-4456.650] -- 0:14:09
Average standard deviation of split frequencies: 0.012402
836000 -- (-4509.245) (-4489.317) (-4511.726) [-4445.824] * [-4461.424] (-4510.942) (-4501.005) (-4466.945) -- 0:14:03
837000 -- (-4512.348) (-4479.838) (-4501.452) [-4437.779] * (-4466.353) (-4525.952) (-4485.358) [-4458.876] -- 0:13:58
838000 -- (-4506.108) (-4475.750) (-4524.653) [-4446.372] * (-4480.776) (-4539.134) (-4486.421) [-4457.036] -- 0:13:53
839000 -- (-4542.735) (-4480.078) (-4512.993) [-4459.392] * (-4485.025) (-4539.041) [-4477.759] (-4467.144) -- 0:13:48
840000 -- (-4527.628) (-4486.388) (-4543.626) [-4459.651] * [-4477.635] (-4519.418) (-4483.757) (-4478.289) -- 0:13:43
Average standard deviation of split frequencies: 0.012264
841000 -- (-4543.095) [-4475.531] (-4502.888) (-4473.706) * (-4483.235) (-4499.059) (-4504.114) [-4460.760] -- 0:13:38
842000 -- (-4528.242) (-4493.802) (-4487.952) [-4475.734] * (-4488.674) [-4488.626] (-4478.347) (-4477.801) -- 0:13:33
843000 -- (-4531.326) (-4517.211) (-4493.750) [-4447.186] * (-4470.698) (-4483.746) (-4503.292) [-4470.448] -- 0:13:27
844000 -- (-4546.869) (-4485.485) (-4488.912) [-4465.326] * (-4486.365) (-4503.445) (-4475.813) [-4473.283] -- 0:13:22
845000 -- (-4558.548) (-4488.919) (-4492.510) [-4458.359] * (-4497.285) (-4509.408) [-4455.916] (-4474.685) -- 0:13:17
Average standard deviation of split frequencies: 0.012147
846000 -- (-4498.845) (-4475.551) [-4460.594] (-4452.871) * (-4511.467) (-4515.615) [-4468.771] (-4460.302) -- 0:13:12
847000 -- (-4533.401) (-4466.901) (-4476.346) [-4448.025] * (-4533.793) (-4515.250) [-4459.238] (-4459.229) -- 0:13:07
848000 -- (-4539.334) (-4471.270) [-4458.560] (-4464.999) * (-4538.519) (-4496.933) [-4472.866] (-4481.737) -- 0:13:02
849000 -- (-4526.401) (-4483.261) [-4459.837] (-4483.344) * (-4507.087) (-4478.749) [-4466.775] (-4484.542) -- 0:12:57
850000 -- (-4511.227) (-4491.783) [-4479.564] (-4463.154) * (-4510.859) (-4492.684) [-4451.365] (-4476.043) -- 0:12:51
Average standard deviation of split frequencies: 0.012392
851000 -- (-4503.515) (-4486.719) [-4463.052] (-4469.917) * (-4509.976) (-4495.414) [-4440.472] (-4492.296) -- 0:12:46
852000 -- (-4512.039) (-4515.965) [-4466.744] (-4467.407) * (-4516.566) (-4511.356) [-4460.786] (-4490.471) -- 0:12:41
853000 -- (-4524.817) (-4520.924) [-4445.351] (-4471.672) * (-4501.448) (-4513.314) [-4454.270] (-4494.127) -- 0:12:36
854000 -- (-4529.008) (-4510.848) [-4447.818] (-4478.080) * (-4490.375) (-4513.690) [-4457.003] (-4484.806) -- 0:12:31
855000 -- (-4523.589) (-4513.069) (-4477.780) [-4455.957] * (-4496.135) (-4512.476) [-4458.226] (-4497.407) -- 0:12:26
Average standard deviation of split frequencies: 0.012529
856000 -- (-4502.803) (-4514.400) (-4471.070) [-4484.572] * (-4512.288) (-4490.302) [-4458.355] (-4503.139) -- 0:12:21
857000 -- (-4526.756) (-4509.851) [-4469.670] (-4500.541) * (-4523.613) (-4504.077) [-4454.852] (-4508.898) -- 0:12:16
858000 -- (-4497.145) (-4527.242) [-4459.808] (-4494.846) * (-4511.157) (-4497.578) [-4448.256] (-4512.413) -- 0:12:10
859000 -- (-4520.932) (-4516.774) [-4457.484] (-4514.807) * (-4490.404) (-4501.709) [-4457.200] (-4533.682) -- 0:12:05
860000 -- (-4528.122) (-4539.344) (-4474.283) [-4463.601] * (-4491.405) (-4495.800) [-4467.951] (-4525.503) -- 0:12:00
Average standard deviation of split frequencies: 0.012905
861000 -- (-4516.022) (-4515.321) [-4447.934] (-4468.039) * (-4511.609) [-4481.039] (-4455.775) (-4511.598) -- 0:11:55
862000 -- (-4490.797) (-4519.855) (-4447.883) [-4476.992] * (-4505.232) [-4461.559] (-4458.610) (-4486.021) -- 0:11:50
863000 -- (-4494.598) (-4545.388) [-4462.615] (-4481.814) * (-4502.371) (-4476.204) [-4469.426] (-4499.212) -- 0:11:45
864000 -- (-4489.801) (-4534.865) [-4454.088] (-4482.159) * (-4496.254) (-4473.161) [-4460.241] (-4508.668) -- 0:11:39
865000 -- (-4476.354) (-4523.749) [-4460.239] (-4509.695) * (-4492.386) (-4487.679) [-4457.225] (-4518.981) -- 0:11:34
Average standard deviation of split frequencies: 0.013112
866000 -- (-4470.400) (-4544.269) [-4455.130] (-4490.974) * (-4497.084) (-4486.414) [-4472.746] (-4532.545) -- 0:11:29
867000 -- [-4464.301] (-4541.918) (-4475.154) (-4496.202) * (-4494.016) (-4499.145) [-4473.343] (-4476.184) -- 0:11:24
868000 -- (-4463.877) (-4513.365) [-4451.468] (-4478.587) * (-4504.296) (-4480.084) [-4484.363] (-4480.726) -- 0:11:19
869000 -- (-4454.845) (-4524.698) [-4465.007] (-4493.242) * (-4525.615) (-4479.022) [-4458.367] (-4491.484) -- 0:11:14
870000 -- (-4483.334) (-4522.475) [-4465.138] (-4492.345) * (-4524.092) (-4494.188) [-4456.062] (-4513.933) -- 0:11:09
Average standard deviation of split frequencies: 0.013032
871000 -- (-4457.205) (-4508.817) [-4471.038] (-4475.458) * (-4526.595) (-4513.708) [-4455.631] (-4503.416) -- 0:11:03
872000 -- [-4469.806] (-4508.045) (-4492.862) (-4494.696) * (-4511.967) (-4511.085) [-4457.506] (-4480.071) -- 0:10:58
873000 -- (-4470.161) (-4512.662) (-4505.666) [-4480.714] * (-4511.108) (-4480.461) [-4469.960] (-4468.264) -- 0:10:53
874000 -- (-4489.463) (-4520.622) [-4477.367] (-4466.246) * (-4502.766) [-4468.286] (-4500.993) (-4491.501) -- 0:10:48
875000 -- (-4489.905) (-4531.649) (-4481.135) [-4470.376] * [-4466.709] (-4474.395) (-4507.267) (-4494.000) -- 0:10:43
Average standard deviation of split frequencies: 0.013208
876000 -- [-4476.575] (-4532.185) (-4479.262) (-4484.146) * (-4465.934) (-4510.929) [-4472.363] (-4491.624) -- 0:10:38
877000 -- [-4454.331] (-4539.732) (-4474.728) (-4467.024) * (-4483.157) (-4508.260) (-4495.162) [-4471.060] -- 0:10:33
878000 -- [-4452.981] (-4551.628) (-4460.180) (-4480.534) * (-4482.363) (-4506.591) (-4503.436) [-4482.848] -- 0:10:27
879000 -- [-4462.340] (-4515.528) (-4457.380) (-4474.685) * (-4506.072) (-4473.983) (-4545.841) [-4480.987] -- 0:10:22
880000 -- (-4469.690) (-4515.021) (-4467.100) [-4471.908] * [-4482.814] (-4468.534) (-4531.790) (-4488.028) -- 0:10:17
Average standard deviation of split frequencies: 0.012989
881000 -- [-4472.946] (-4547.204) (-4465.301) (-4490.504) * (-4464.338) [-4469.552] (-4499.654) (-4507.559) -- 0:10:12
882000 -- [-4452.844] (-4516.678) (-4476.825) (-4529.011) * [-4455.042] (-4495.469) (-4499.065) (-4481.148) -- 0:10:07
883000 -- (-4470.989) (-4538.235) [-4451.912] (-4516.845) * [-4463.921] (-4498.128) (-4491.379) (-4479.617) -- 0:10:02
884000 -- [-4462.302] (-4484.581) (-4477.308) (-4506.258) * [-4454.576] (-4472.538) (-4538.974) (-4484.447) -- 0:09:57
885000 -- (-4482.845) (-4531.529) (-4487.218) [-4484.744] * [-4451.312] (-4455.742) (-4514.011) (-4499.490) -- 0:09:51
Average standard deviation of split frequencies: 0.012953
886000 -- (-4517.090) (-4476.784) (-4481.137) [-4472.793] * [-4452.077] (-4481.284) (-4496.568) (-4511.499) -- 0:09:46
887000 -- (-4514.175) (-4487.562) [-4476.211] (-4474.243) * [-4451.075] (-4495.069) (-4491.292) (-4481.495) -- 0:09:41
888000 -- (-4521.506) (-4510.609) (-4472.154) [-4479.130] * (-4448.799) (-4507.885) [-4466.084] (-4493.359) -- 0:09:36
889000 -- (-4515.308) (-4513.702) [-4471.630] (-4498.636) * [-4441.549] (-4514.029) (-4467.413) (-4488.460) -- 0:09:31
890000 -- (-4515.964) (-4496.058) (-4473.626) [-4469.274] * [-4461.523] (-4513.706) (-4468.573) (-4493.021) -- 0:09:26
Average standard deviation of split frequencies: 0.012829
891000 -- (-4512.476) (-4470.217) (-4461.001) [-4456.235] * (-4479.901) (-4531.880) [-4468.992] (-4493.127) -- 0:09:20
892000 -- (-4533.017) (-4462.457) (-4452.431) [-4453.153] * (-4484.321) (-4508.150) [-4469.411] (-4490.788) -- 0:09:15
893000 -- (-4534.565) (-4472.418) (-4477.039) [-4457.910] * [-4451.615] (-4522.410) (-4479.422) (-4488.961) -- 0:09:10
894000 -- (-4498.894) (-4461.758) [-4450.861] (-4465.071) * [-4453.035] (-4525.670) (-4478.382) (-4518.147) -- 0:09:05
895000 -- (-4483.559) (-4484.458) (-4472.773) [-4463.915] * [-4467.913] (-4511.287) (-4474.172) (-4521.052) -- 0:09:00
Average standard deviation of split frequencies: 0.012637
896000 -- (-4482.746) (-4501.737) (-4518.765) [-4457.240] * (-4479.751) (-4513.473) [-4467.392] (-4524.849) -- 0:08:55
897000 -- [-4475.960] (-4522.442) (-4514.627) (-4482.541) * [-4475.715] (-4517.755) (-4483.847) (-4537.077) -- 0:08:50
898000 -- (-4472.758) (-4509.730) (-4521.680) [-4475.928] * (-4460.121) (-4508.730) [-4468.678] (-4549.823) -- 0:08:44
899000 -- [-4462.249] (-4512.079) (-4507.389) (-4493.994) * [-4456.419] (-4544.734) (-4475.164) (-4545.672) -- 0:08:39
900000 -- [-4462.676] (-4505.553) (-4495.684) (-4494.037) * (-4469.949) (-4529.448) [-4465.738] (-4520.766) -- 0:08:34
Average standard deviation of split frequencies: 0.012354
901000 -- [-4472.971] (-4512.224) (-4523.029) (-4487.638) * (-4478.957) (-4536.460) [-4462.275] (-4540.850) -- 0:08:29
902000 -- (-4469.447) (-4513.505) [-4489.288] (-4473.676) * (-4498.236) (-4523.065) [-4469.248] (-4554.406) -- 0:08:24
903000 -- [-4463.760] (-4497.749) (-4475.561) (-4491.527) * (-4504.391) (-4516.411) [-4477.997] (-4537.131) -- 0:08:19
904000 -- [-4453.712] (-4485.890) (-4522.244) (-4490.087) * (-4496.441) (-4492.638) [-4467.539] (-4541.338) -- 0:08:14
905000 -- (-4456.792) (-4493.772) (-4532.880) [-4473.108] * (-4502.572) (-4491.635) [-4477.426] (-4547.081) -- 0:08:08
Average standard deviation of split frequencies: 0.012294
906000 -- [-4471.093] (-4491.579) (-4520.762) (-4476.249) * (-4487.025) (-4505.933) [-4472.632] (-4524.651) -- 0:08:03
907000 -- [-4465.815] (-4479.117) (-4542.845) (-4480.458) * (-4494.691) (-4483.557) [-4469.692] (-4544.720) -- 0:07:58
908000 -- [-4465.712] (-4510.000) (-4506.660) (-4475.798) * (-4514.818) [-4472.386] (-4490.690) (-4530.846) -- 0:07:53
909000 -- [-4462.064] (-4473.125) (-4488.953) (-4486.635) * (-4502.678) [-4470.441] (-4486.546) (-4513.543) -- 0:07:48
910000 -- [-4452.060] (-4448.434) (-4506.237) (-4490.987) * (-4506.683) [-4493.454] (-4480.704) (-4542.286) -- 0:07:43
Average standard deviation of split frequencies: 0.011811
911000 -- (-4456.964) [-4463.042] (-4494.762) (-4493.106) * (-4528.020) [-4480.964] (-4479.990) (-4504.513) -- 0:07:38
912000 -- [-4461.125] (-4463.162) (-4494.111) (-4519.482) * (-4521.943) (-4467.956) [-4472.250] (-4506.545) -- 0:07:32
913000 -- [-4460.554] (-4471.532) (-4495.079) (-4533.356) * (-4490.751) [-4491.785] (-4479.466) (-4520.329) -- 0:07:27
914000 -- [-4461.018] (-4475.814) (-4511.481) (-4511.999) * (-4489.357) (-4500.707) [-4472.210] (-4525.412) -- 0:07:22
915000 -- (-4451.504) [-4458.794] (-4528.631) (-4518.204) * (-4508.113) [-4478.583] (-4481.659) (-4519.541) -- 0:07:17
Average standard deviation of split frequencies: 0.011537
916000 -- (-4481.060) [-4466.992] (-4518.777) (-4478.594) * (-4515.180) (-4483.144) [-4463.730] (-4505.669) -- 0:07:12
917000 -- [-4474.067] (-4466.546) (-4523.727) (-4475.992) * (-4495.825) [-4466.708] (-4477.308) (-4510.238) -- 0:07:07
918000 -- (-4495.256) [-4458.220] (-4538.496) (-4458.748) * [-4478.135] (-4460.080) (-4519.975) (-4526.377) -- 0:07:02
919000 -- (-4510.671) [-4450.609] (-4509.335) (-4483.596) * (-4474.267) [-4449.811] (-4509.583) (-4513.745) -- 0:06:56
920000 -- (-4486.653) [-4462.360] (-4519.605) (-4476.842) * [-4487.242] (-4463.493) (-4512.864) (-4482.776) -- 0:06:51
Average standard deviation of split frequencies: 0.011323
921000 -- (-4482.289) (-4473.842) (-4507.965) [-4466.897] * (-4514.201) [-4476.431] (-4499.644) (-4512.640) -- 0:06:46
922000 -- (-4486.174) [-4466.475] (-4521.244) (-4449.231) * (-4500.675) (-4471.851) [-4472.669] (-4514.421) -- 0:06:41
923000 -- (-4462.783) [-4461.207] (-4476.387) (-4465.088) * (-4530.279) (-4477.667) [-4476.699] (-4530.421) -- 0:06:36
924000 -- (-4478.376) [-4478.933] (-4497.972) (-4482.828) * (-4474.748) (-4464.804) [-4475.154] (-4544.413) -- 0:06:31
925000 -- [-4451.850] (-4487.873) (-4469.214) (-4503.488) * (-4484.397) [-4457.627] (-4476.135) (-4535.711) -- 0:06:26
Average standard deviation of split frequencies: 0.011106
926000 -- [-4470.519] (-4494.593) (-4471.528) (-4481.756) * (-4486.875) [-4462.647] (-4484.187) (-4502.057) -- 0:06:20
927000 -- [-4469.110] (-4482.725) (-4475.412) (-4505.609) * (-4463.831) [-4459.682] (-4491.518) (-4534.184) -- 0:06:15
928000 -- [-4480.644] (-4494.211) (-4482.806) (-4491.662) * (-4454.734) [-4458.765] (-4486.432) (-4516.762) -- 0:06:10
929000 -- (-4524.558) [-4485.463] (-4482.532) (-4482.206) * [-4460.835] (-4492.891) (-4506.146) (-4491.022) -- 0:06:05
930000 -- (-4518.551) (-4512.234) (-4487.281) [-4469.424] * [-4466.539] (-4493.741) (-4495.382) (-4485.215) -- 0:06:00
Average standard deviation of split frequencies: 0.011070
931000 -- (-4532.587) (-4484.336) (-4491.319) [-4468.395] * [-4466.533] (-4483.611) (-4491.581) (-4516.236) -- 0:05:55
932000 -- (-4510.001) (-4487.775) [-4477.887] (-4471.891) * [-4453.110] (-4467.698) (-4501.412) (-4522.650) -- 0:05:49
933000 -- (-4471.465) (-4495.532) (-4483.171) [-4473.220] * [-4453.386] (-4484.271) (-4503.777) (-4505.252) -- 0:05:44
934000 -- [-4452.582] (-4535.955) (-4488.783) (-4487.079) * [-4437.811] (-4471.513) (-4479.906) (-4488.931) -- 0:05:39
935000 -- [-4473.705] (-4522.548) (-4501.996) (-4481.880) * (-4459.737) [-4462.273] (-4493.138) (-4505.581) -- 0:05:34
Average standard deviation of split frequencies: 0.011032
936000 -- [-4466.842] (-4513.561) (-4499.932) (-4457.401) * (-4452.862) [-4472.987] (-4502.781) (-4491.088) -- 0:05:29
937000 -- (-4481.990) (-4500.695) (-4513.683) [-4473.295] * [-4451.370] (-4476.359) (-4528.947) (-4483.584) -- 0:05:24
938000 -- [-4486.010] (-4503.526) (-4523.566) (-4475.143) * (-4456.824) [-4466.995] (-4489.837) (-4508.856) -- 0:05:19
939000 -- (-4492.744) (-4520.388) (-4516.922) [-4464.771] * [-4449.911] (-4458.334) (-4488.237) (-4497.931) -- 0:05:14
940000 -- (-4496.684) (-4498.709) (-4538.052) [-4473.696] * [-4465.558] (-4461.316) (-4514.074) (-4500.579) -- 0:05:08
Average standard deviation of split frequencies: 0.011083
941000 -- [-4467.224] (-4505.392) (-4495.417) (-4487.068) * [-4465.776] (-4457.427) (-4514.918) (-4524.120) -- 0:05:03
942000 -- (-4484.793) (-4488.396) [-4494.556] (-4479.067) * (-4459.550) [-4469.288] (-4510.946) (-4539.270) -- 0:04:58
943000 -- (-4499.095) (-4507.707) (-4499.715) [-4469.284] * [-4459.767] (-4475.649) (-4533.145) (-4500.702) -- 0:04:53
944000 -- (-4507.607) (-4528.582) (-4486.700) [-4465.955] * [-4467.316] (-4496.597) (-4512.729) (-4523.259) -- 0:04:48
945000 -- (-4490.729) (-4543.028) (-4493.940) [-4462.397] * [-4454.042] (-4524.383) (-4493.384) (-4487.352) -- 0:04:43
Average standard deviation of split frequencies: 0.011007
946000 -- [-4477.591] (-4528.355) (-4516.530) (-4467.230) * [-4459.941] (-4522.158) (-4482.419) (-4498.310) -- 0:04:37
947000 -- (-4463.876) (-4502.739) (-4518.761) [-4474.446] * (-4461.636) (-4529.286) [-4461.413] (-4485.708) -- 0:04:32
948000 -- (-4483.296) (-4485.274) (-4519.697) [-4464.355] * (-4467.308) (-4537.791) [-4468.466] (-4483.439) -- 0:04:27
949000 -- (-4472.560) (-4496.281) (-4504.899) [-4450.604] * [-4457.870] (-4529.932) (-4472.750) (-4481.619) -- 0:04:22
950000 -- [-4475.075] (-4485.522) (-4514.278) (-4450.209) * (-4477.426) (-4541.207) (-4476.532) [-4471.603] -- 0:04:17
Average standard deviation of split frequencies: 0.010922
951000 -- (-4468.954) [-4457.208] (-4535.625) (-4500.811) * (-4464.556) (-4511.734) (-4488.642) [-4466.534] -- 0:04:12
952000 -- [-4473.088] (-4489.529) (-4502.868) (-4483.943) * (-4462.888) (-4531.519) [-4469.071] (-4469.909) -- 0:04:07
953000 -- (-4501.201) (-4505.362) (-4487.946) [-4474.720] * [-4456.879] (-4540.658) (-4462.252) (-4500.346) -- 0:04:01
954000 -- (-4482.046) (-4500.769) (-4496.737) [-4467.388] * (-4478.008) (-4551.669) [-4461.212] (-4483.279) -- 0:03:56
955000 -- (-4487.695) [-4493.769] (-4508.707) (-4463.578) * (-4465.927) (-4517.727) [-4466.082] (-4484.630) -- 0:03:51
Average standard deviation of split frequencies: 0.010741
956000 -- [-4474.665] (-4506.717) (-4502.481) (-4485.974) * (-4477.590) (-4498.601) [-4454.083] (-4472.065) -- 0:03:46
957000 -- [-4469.933] (-4480.139) (-4504.000) (-4474.768) * (-4493.023) (-4528.931) [-4469.104] (-4503.379) -- 0:03:41
958000 -- (-4455.540) [-4476.239] (-4489.963) (-4483.954) * (-4508.389) (-4520.320) [-4462.180] (-4503.664) -- 0:03:36
959000 -- [-4463.535] (-4465.831) (-4527.706) (-4494.500) * (-4511.879) (-4501.594) [-4468.323] (-4482.418) -- 0:03:31
960000 -- [-4465.783] (-4478.693) (-4511.695) (-4488.178) * (-4485.169) (-4524.087) [-4477.042] (-4487.580) -- 0:03:25
Average standard deviation of split frequencies: 0.010672
961000 -- (-4467.173) [-4459.951] (-4514.658) (-4508.068) * (-4490.599) (-4534.467) [-4460.974] (-4466.486) -- 0:03:20
962000 -- [-4483.826] (-4466.240) (-4539.747) (-4495.107) * (-4498.170) (-4543.757) [-4466.310] (-4480.566) -- 0:03:15
963000 -- (-4482.159) (-4479.324) (-4540.556) [-4481.234] * (-4465.847) (-4521.868) (-4495.753) [-4453.213] -- 0:03:10
964000 -- (-4495.335) [-4472.900] (-4514.794) (-4466.153) * (-4462.031) (-4514.487) (-4503.006) [-4458.067] -- 0:03:05
965000 -- (-4486.857) [-4467.218] (-4496.073) (-4470.369) * (-4461.222) (-4503.324) (-4526.249) [-4454.115] -- 0:03:00
Average standard deviation of split frequencies: 0.010714
966000 -- (-4504.941) [-4458.125] (-4485.026) (-4463.505) * (-4468.231) (-4528.237) (-4494.319) [-4468.424] -- 0:02:55
967000 -- (-4484.624) (-4473.824) (-4499.415) [-4465.586] * [-4455.922] (-4526.817) (-4506.262) (-4474.935) -- 0:02:49
968000 -- (-4519.376) (-4490.397) (-4500.398) [-4463.134] * (-4476.709) (-4528.911) (-4518.578) [-4464.679] -- 0:02:44
969000 -- (-4501.118) (-4507.666) (-4501.851) [-4469.932] * (-4476.989) (-4524.010) (-4515.278) [-4469.748] -- 0:02:39
970000 -- (-4512.871) (-4502.916) (-4475.901) [-4471.684] * (-4465.667) (-4536.920) (-4533.381) [-4462.698] -- 0:02:34
Average standard deviation of split frequencies: 0.010650
971000 -- (-4491.684) (-4512.122) [-4475.330] (-4460.871) * (-4464.411) (-4495.021) (-4524.790) [-4470.019] -- 0:02:29
972000 -- (-4525.652) (-4490.401) (-4473.666) [-4457.520] * [-4467.217] (-4511.817) (-4493.640) (-4471.462) -- 0:02:24
973000 -- (-4498.376) (-4469.653) (-4501.926) [-4451.573] * [-4453.268] (-4488.059) (-4490.946) (-4488.234) -- 0:02:19
974000 -- (-4481.700) (-4489.595) (-4495.428) [-4452.646] * [-4453.468] (-4483.138) (-4505.647) (-4504.528) -- 0:02:13
975000 -- (-4502.974) (-4480.279) (-4487.989) [-4463.015] * [-4454.692] (-4493.146) (-4499.641) (-4517.270) -- 0:02:08
Average standard deviation of split frequencies: 0.010464
976000 -- (-4510.656) (-4500.929) (-4452.578) [-4477.556] * [-4461.616] (-4493.039) (-4489.639) (-4516.291) -- 0:02:03
977000 -- (-4516.128) (-4489.224) [-4459.589] (-4470.740) * [-4453.478] (-4492.809) (-4491.285) (-4506.317) -- 0:01:58
978000 -- (-4509.872) (-4494.139) [-4463.252] (-4468.566) * [-4456.052] (-4499.273) (-4501.592) (-4501.664) -- 0:01:53
979000 -- (-4514.012) (-4510.838) (-4470.320) [-4454.863] * [-4440.216] (-4497.781) (-4492.825) (-4490.525) -- 0:01:48
980000 -- (-4512.079) (-4493.560) (-4476.296) [-4474.205] * [-4458.917] (-4482.314) (-4483.705) (-4495.166) -- 0:01:42
Average standard deviation of split frequencies: 0.010484
981000 -- (-4490.854) (-4529.010) (-4478.319) [-4461.360] * [-4454.938] (-4514.196) (-4492.052) (-4510.221) -- 0:01:37
982000 -- (-4466.183) (-4516.944) (-4484.578) [-4470.890] * [-4465.462] (-4529.444) (-4504.115) (-4496.396) -- 0:01:32
983000 -- [-4460.725] (-4511.502) (-4477.018) (-4467.742) * [-4456.029] (-4522.612) (-4504.390) (-4522.439) -- 0:01:27
984000 -- (-4473.211) (-4516.667) [-4471.216] (-4498.676) * [-4449.681] (-4538.446) (-4483.496) (-4510.275) -- 0:01:22
985000 -- (-4476.286) (-4502.727) (-4469.532) [-4489.119] * [-4447.525] (-4547.040) (-4486.219) (-4537.408) -- 0:01:17
Average standard deviation of split frequencies: 0.010621
986000 -- [-4457.408] (-4501.778) (-4465.649) (-4498.805) * [-4444.463] (-4509.964) (-4484.081) (-4535.549) -- 0:01:12
987000 -- (-4504.242) (-4488.767) [-4459.523] (-4497.150) * [-4461.120] (-4478.600) (-4495.495) (-4525.260) -- 0:01:06
988000 -- (-4486.978) (-4498.228) [-4459.416] (-4474.632) * [-4458.145] (-4478.733) (-4507.798) (-4509.629) -- 0:01:01
989000 -- (-4504.693) (-4494.856) [-4442.713] (-4461.313) * [-4472.638] (-4487.483) (-4514.026) (-4513.048) -- 0:00:56
990000 -- (-4474.644) (-4502.022) [-4467.837] (-4460.823) * [-4465.856] (-4494.131) (-4509.214) (-4516.174) -- 0:00:51
Average standard deviation of split frequencies: 0.010721
991000 -- [-4460.360] (-4491.061) (-4475.576) (-4486.659) * [-4476.169] (-4487.167) (-4498.819) (-4507.766) -- 0:00:46
992000 -- [-4465.995] (-4487.212) (-4481.237) (-4475.743) * [-4465.744] (-4515.393) (-4480.360) (-4515.916) -- 0:00:41
993000 -- [-4453.960] (-4477.903) (-4452.221) (-4474.756) * [-4472.298] (-4531.578) (-4486.275) (-4519.841) -- 0:00:36
994000 -- [-4460.646] (-4485.950) (-4477.970) (-4490.117) * (-4476.014) (-4537.715) (-4481.318) [-4469.457] -- 0:00:30
995000 -- (-4477.351) (-4474.716) (-4484.003) [-4463.391] * (-4461.159) (-4495.248) (-4495.104) [-4469.183] -- 0:00:25
Average standard deviation of split frequencies: 0.010748
996000 -- (-4501.566) (-4508.868) (-4505.566) [-4482.545] * (-4458.724) (-4507.024) [-4471.440] (-4510.465) -- 0:00:20
997000 -- [-4495.292] (-4494.104) (-4524.058) (-4494.611) * (-4451.235) (-4525.543) [-4462.711] (-4511.167) -- 0:00:15
998000 -- [-4473.631] (-4512.437) (-4500.798) (-4482.853) * [-4448.252] (-4519.374) (-4478.745) (-4519.600) -- 0:00:10
999000 -- [-4480.283] (-4485.993) (-4527.199) (-4479.941) * [-4454.092] (-4511.547) (-4468.426) (-4497.396) -- 0:00:05
1000000 -- (-4491.520) [-4478.664] (-4502.026) (-4481.988) * [-4453.501] (-4511.367) (-4508.946) (-4481.962) -- 0:00:00
Average standard deviation of split frequencies: 0.010878
Analysis completed in 1 hours 25 mins 49 seconds
Analysis used 5143.57 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -4421.50
Likelihood of best state for "cold" chain of run 2 was -4430.18
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
28.1 % ( 20 %) Dirichlet(Revmat{all})
46.2 % ( 45 %) Slider(Revmat{all})
24.4 % ( 29 %) Dirichlet(Pi{all})
26.5 % ( 25 %) Slider(Pi{all})
33.0 % ( 24 %) Multiplier(Alpha{1,2})
35.2 % ( 30 %) Multiplier(Alpha{3})
47.7 % ( 19 %) Slider(Pinvar{all})
41.9 % ( 46 %) ExtSPR(Tau{all},V{all})
31.8 % ( 37 %) ExtTBR(Tau{all},V{all})
45.9 % ( 41 %) NNI(Tau{all},V{all})
35.3 % ( 40 %) ParsSPR(Tau{all},V{all})
27.0 % ( 22 %) Multiplier(V{all})
58.9 % ( 59 %) Nodeslider(V{all})
24.8 % ( 30 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
28.2 % ( 26 %) Dirichlet(Revmat{all})
45.6 % ( 29 %) Slider(Revmat{all})
24.5 % ( 27 %) Dirichlet(Pi{all})
27.4 % ( 25 %) Slider(Pi{all})
33.0 % ( 28 %) Multiplier(Alpha{1,2})
35.1 % ( 21 %) Multiplier(Alpha{3})
48.1 % ( 27 %) Slider(Pinvar{all})
41.6 % ( 38 %) ExtSPR(Tau{all},V{all})
31.7 % ( 32 %) ExtTBR(Tau{all},V{all})
45.6 % ( 40 %) NNI(Tau{all},V{all})
35.0 % ( 24 %) ParsSPR(Tau{all},V{all})
27.1 % ( 27 %) Multiplier(V{all})
58.8 % ( 53 %) Nodeslider(V{all})
24.6 % ( 17 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.22 0.02 0.00
2 | 166496 0.24 0.02
3 | 167241 166727 0.25
4 | 166270 166860 166406
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.21 0.01 0.00
2 | 166894 0.24 0.02
3 | 166196 166227 0.25
4 | 166834 167129 166720
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -4452.69
| 2 2 |
| 1 |
| 1 1 1 21 |
| 2 2 2 |
| 1 2 2 |
| 21 22 2 1 2 1 2 2 |
| 2 2 2111 2 * *2 21 2 |
|1 1 2 2 1 22 2 2 2 2 11 1 22 1 1 1 2111 2|
|2 1 1 1 21 11 211 |
| 1 12 1 1 2 1 * 2 1|
| 2 1 2 2 1 2 1 2 1 |
| * 11 2 1 1 22 21 1 1 1 |
| * 1 1 22 2 |
| 1 2 |
| 2 1 2 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -4476.10
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -4431.23 -4508.77
2 -4436.53 -4506.59
--------------------------------------
TOTAL -4431.92 -4508.18
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.114480 0.007690 0.951028 1.293493 1.111170 973.80 1111.07 1.000
r(A<->C){all} 0.117003 0.000256 0.086583 0.147741 0.116415 259.45 379.00 1.001
r(A<->G){all} 0.226462 0.000611 0.178492 0.274292 0.225349 340.72 346.46 1.002
r(A<->T){all} 0.039871 0.000047 0.026958 0.053192 0.039683 611.11 687.37 1.001
r(C<->G){all} 0.042659 0.000165 0.019883 0.068668 0.041399 634.19 649.51 1.000
r(C<->T){all} 0.496954 0.000911 0.437003 0.557066 0.497721 365.49 368.96 1.001
r(G<->T){all} 0.077051 0.000139 0.055166 0.101116 0.076594 618.85 634.74 1.000
pi(A){all} 0.281570 0.000216 0.253993 0.310848 0.281554 779.08 799.96 1.000
pi(C){all} 0.176122 0.000145 0.151642 0.198808 0.175851 515.11 550.43 1.000
pi(G){all} 0.185792 0.000164 0.160253 0.209569 0.185869 394.28 460.69 1.001
pi(T){all} 0.356515 0.000244 0.326516 0.387437 0.356591 720.08 785.97 1.000
alpha{1,2} 0.561206 0.024570 0.312241 0.868876 0.533798 545.60 662.98 1.000
alpha{3} 0.769234 0.051375 0.412675 1.242272 0.730863 645.42 741.36 1.000
pinvar{all} 0.264558 0.005944 0.112395 0.408126 0.270050 477.07 563.86 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C52
2 -- C67
3 -- C66
4 -- C12
5 -- C10
6 -- C69
7 -- C70
8 -- C68
9 -- C17
10 -- C14
11 -- C76
12 -- C59
13 -- C75
14 -- C20
15 -- C22
16 -- C78
17 -- C79
18 -- C77
19 -- C26
20 -- C23
21 -- C85
22 -- C84
23 -- C58
24 -- C30
25 -- C28
26 -- C87
27 -- C88
28 -- C34
29 -- C32
30 -- C35
31 -- C38
32 -- C39
33 -- C40
34 -- C3
35 -- C31
36 -- C19
37 -- C13
38 -- C48
39 -- C4
40 -- C43
41 -- C24
42 -- C44
43 -- C89
44 -- C55
45 -- C60
46 -- C61
47 -- C16
48 -- C54
49 -- C47
50 -- C45
51 -- C74
52 -- C42
53 -- C82
54 -- C50
55 -- C37
56 -- C6
57 -- C73
58 -- C15
59 -- C86
60 -- C49
61 -- C63
62 -- C1
63 -- C41
64 -- C27
65 -- C21
66 -- C71
67 -- C62
68 -- C46
69 -- C9
70 -- C29
71 -- C80
72 -- C83
73 -- C18
74 -- C11
75 -- C81
76 -- C57
77 -- C92
78 -- C5
79 -- C33
80 -- C56
81 -- C7
82 -- C2
83 -- C64
84 -- C91
85 -- C72
86 -- C51
87 -- C65
88 -- C53
89 -- C8
90 -- C25
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
--------------------------------------------------------------------------------
1 -- .**********************************************************************
2 -- .*.....................................................................
3 -- ..*....................................................................
4 -- ...*...................................................................
5 -- ....*..................................................................
6 -- .....*.................................................................
7 -- ......*................................................................
8 -- .......*...............................................................
9 -- ........*..............................................................
10 -- .........*.............................................................
11 -- ..........*............................................................
12 -- ...........*...........................................................
13 -- ............*..........................................................
14 -- .............*.........................................................
15 -- ..............*........................................................
16 -- ...............*.......................................................
17 -- ................*......................................................
18 -- .................*.....................................................
19 -- ..................*....................................................
20 -- ...................*...................................................
21 -- ....................*..................................................
22 -- .....................*.................................................
23 -- ......................*................................................
24 -- .......................*...............................................
25 -- ........................*..............................................
26 -- .........................*.............................................
27 -- ..........................*............................................
28 -- ...........................*...........................................
29 -- ............................*..........................................
30 -- .............................*.........................................
31 -- ..............................*........................................
32 -- ...............................*.......................................
33 -- ................................*......................................
34 -- .................................*.....................................
35 -- ..................................*....................................
36 -- ...................................*...................................
37 -- ....................................*..................................
38 -- .....................................*.................................
39 -- ......................................*................................
40 -- .......................................*...............................
41 -- ........................................*..............................
42 -- .........................................*.............................
43 -- ..........................................*............................
44 -- ...........................................*...........................
45 -- ............................................*..........................
46 -- .............................................*.........................
47 -- ..............................................*........................
48 -- ...............................................*.......................
49 -- ................................................*......................
50 -- .................................................*.....................
51 -- ..................................................*....................
52 -- ...................................................*...................
53 -- ....................................................*..................
54 -- .....................................................*.................
55 -- ......................................................*................
56 -- .......................................................*...............
57 -- ........................................................*..............
58 -- .........................................................*.............
59 -- ..........................................................*............
60 -- ...........................................................*...........
61 -- ............................................................*..........
62 -- .............................................................*.........
63 -- ..............................................................*........
64 -- ...............................................................*.......
65 -- ................................................................*......
66 -- .................................................................*.....
67 -- ..................................................................*....
68 -- ...................................................................*...
69 -- ....................................................................*..
70 -- .....................................................................*.
71 -- ......................................................................*
72 -- .......................................................................
73 -- .......................................................................
74 -- .......................................................................
75 -- .......................................................................
76 -- .......................................................................
77 -- .......................................................................
78 -- .......................................................................
79 -- .......................................................................
80 -- .......................................................................
81 -- .......................................................................
82 -- .......................................................................
83 -- .......................................................................
84 -- .......................................................................
85 -- .......................................................................
86 -- .......................................................................
87 -- .......................................................................
88 -- .......................................................................
89 -- .......................................................................
90 -- .......................................................................
91 -- ......*.....................*..........................................
92 -- ..................*............................................*.....*.
93 -- ...............................*.................*.....................
94 -- ................*.......................................*.............*
95 -- ........*....*.*...*...............**...*.....*.................*......
96 -- .......................................................*............*..
97 -- .....................*.................................................
98 -- ........*.*.******.***.**..*.*...*.**..**.....*...*.*.***.......**..*.*
99 -- ........................*........*.....................................
100 -- .......................................................*...............
101 -- ........*.*.******.***.*...*.*.....**..**.....*...*.*.***.......**..*.*
102 -- ....................................................*..................
103 -- ....................*..................*...............*............*..
104 -- ..................................................*....................
105 -- ..................*............................................*.....*.
106 -- .*.**.*****.**********.***.***...*.********...*.*.*.********.*.***.****
107 -- .............................*........................*................
108 -- .*.********.**********.*******.************...*.***.********.*.***.****
109 -- ....*.*.***.**********.***.***...*.**.***.....*...*.*.****...*.***..***
110 -- ..*........*................................*..........................
111 -- ......................*.....................................*..........
112 -- .*.********.**********.********************...*.***.********.*.***.****
113 -- ..................................................................*....
114 -- ........*.*.******.***.**..*.*...*.**..**.....*...*.*.***.......**..*.*
115 -- ......*...........*.........*..................................*.....*.
116 -- .*.********.**********.*******..***********...*.*.*.********.*.***.****
117 -- ...*...*.............................*.................................
118 -- ................*.....................................................*
119 -- ........*.*.******.***.**..*.*...*.**..**.....*...*.*.***....*..**..*.*
120 -- .*********************.*************************************.**********
121 -- .....*....................*.....*.*....................................
122 -- .*.********.**********.********************...*.************.*****.****
123 -- .*.*...*.............................*...**.....*....*....**.......*...
124 -- ...................................................*..........*........
125 -- ........*.*.******.***.**..*.*...*.**..**.....*...*.*.****...*..**..*.*
126 -- .*********************.********************.*.*.************.*****.****
127 -- ......*..*........*.........*..................................*.....*.
128 -- ....................*..................*...............................
129 -- ........*....***...*...............**...*.....*.................*......
130 -- ........*.*.******.***.**..*.*...*.**.***.....*...*.*.****...*..**..*.*
131 -- ....*.*..*........*.........*..................................*.....*.
132 -- ........*.*.******.***.***.*.*...*.**.***.....*...*.*.****...*..**..*.*
133 -- ..........*.......................................*....................
134 -- ........*.*.****.*.***.*...*.*.....**..**.....*...*.*.**........*...*..
135 -- ........*.*.******.***.*...*.*.....**..**.....*...*.*.***.......*...*.*
136 -- ......*................................................................
137 -- ..........*.*.......*..................*...............*............*..
138 -- ............*.......*..................*...............*............*..
139 -- ..........*.*.......*..................*..........*....*............*..
140 -- ...............................................................*.....*.
141 -- ..*........*...........................................................
142 -- .*.**.*****.**********.***.***...*.********...*.*.*.********.*.***.****
143 -- ..................*..................................................*.
144 -- .*.*...*.............................*...**.....*....*....**.......*...
145 -- .*.********.**********.********************...*.************.*****.****
146 -- ...*.................................*.................................
147 -- ...*...*...............................................................
148 -- .......*.............................*.................................
149 -- ...........*................................*..........................
150 -- ..*.........................................*..........................
151 -- ..................*............................................*.......
152 -- .......................................*...............*............*..
153 -- ....*.*.***.**********.***.***...*.**.***.....*...*.*.****...*.***..***
154 -- .................*.........*...........................................
155 -- ....*.*.***.**********.**..***...*.**.***.....*...*.*.****...*.***..***
156 -- .*********************.********************.*.*.************.*****.****
157 -- ..*........*................................*..........................
158 -- ......*.....................*..........................................
159 -- ........*....***...*.*.............**...*.....*.....*...........*......
160 -- ............................*..........................................
161 -- .....................*.....*...........................................
162 -- .........................*............*................................
163 -- ......................................*..................*.............
164 -- ..............*...................................*....................
165 -- ................*.......................................*........*....*
166 -- ..........*.*.......*........*.........*..........*...**............*..
167 -- ..........*.*....*..*......*.*.........*..........*...**............*..
168 -- ..........*.........*..................*..........*....*............*..
169 -- ..........*.*....*..*..*...*.*.........*..........*...**............*..
170 -- ......*.***.**********.***.***...*.**.***.....*...*.*.****...*.***..***
171 -- .......................*.....*........................*................
172 -- ....................................................................*..
173 -- ......................*.....................................*..........
174 -- ............................................................*..........
175 -- ..........................*.....*......................................
176 -- ......................*.....................................*..........
177 -- .......................................................*...............
178 -- .......................................................*............*..
179 -- ......................*................................................
180 -- .......................................................................
181 -- .....*....................*.....*......................................
182 -- .......................................................*............*..
183 -- ....................................................................*..
184 -- ....................................................................*..
185 -- .....*............................*....................................
186 -- .....................*..............................*..................
187 -- ....................................................................*..
188 -- ......................*................................................
189 -- .....*..........................*.*....................................
190 -- ............................................................*..........
191 -- ..................................*....................................
192 -- .................*.........*.*........................*................
193 -- ................................*......................................
194 -- ..........................*............................................
195 -- .......................................................................
196 -- .......................................................................
197 -- .......................................................*............*..
198 -- .......................................................*...............
199 -- .....*.................................................................
200 -- .......................................................................
201 -- ............................................................*..........
202 -- .....*....................*.......*....................................
203 -- ......................*.....................................*..........
204 -- .....*....................*............................................
205 -- .......................................................................
206 -- .......................................................*...............
207 -- ............................................................*..........
208 -- .....*..........................*......................................
209 -- ......................*.....................................*..........
210 -- .......................................................*............*..
211 -- ................................*.*....................................
212 -- ......................*................................................
213 -- .......................................................................
214 -- ......................*................................................
215 -- ..........................*.....*.*....................................
216 -- ..........*.*..........................................................
217 -- .......................................................*...............
218 -- ..........................*.......*....................................
219 -- .....*....................*.....*.*....................................
220 -- ..............*...................................*.*..................
221 -- ........*....***...*...............**...*.....*.....*...........*......
222 -- ..........*.........*..................*...............*............*..
223 -- ..........*.*.......*........*.........*..............**............*..
224 -- ...........................................*...........................
225 -- ...............................................*.......................
226 -- ...........................................*...*.......................
227 -- .............................................*.........................
228 -- .............................................*....................*....
229 -- .*********************.*************************************.**********
230 -- ....*...*.*.******.***.***.*.*...*.**.***.....*...*.*.****...*..**..*.*
231 -- ...........................................*.*.........................
232 -- ...............................................*..................*....
233 -- .*********************.**********************.**************.**********
234 -- .............................................*.*.......................
235 -- ....*.*...........*.........*..................................*.....*.
236 -- ...........................*.*........................*................
237 -- ........*....***...*.*.............**...*.....*.................*......
238 -- ..................................................*.*..................
239 -- ..................................................................*....
240 -- .*********************.*************************************.*****.****
241 -- .*********************.********************.*.**************.*****.****
242 -- ........*.*.****.*.***.*...*.*.....**..**.....*...*.*.**........**..*..
--------------------------------------------------------------------------------
ID -- Partition (continued)
--------------------------------------------------------------------------------
1 -- *******************
2 -- ...................
3 -- ...................
4 -- ...................
5 -- ...................
6 -- ...................
7 -- ...................
8 -- ...................
9 -- ...................
10 -- ...................
11 -- ...................
12 -- ...................
13 -- ...................
14 -- ...................
15 -- ...................
16 -- ...................
17 -- ...................
18 -- ...................
19 -- ...................
20 -- ...................
21 -- ...................
22 -- ...................
23 -- ...................
24 -- ...................
25 -- ...................
26 -- ...................
27 -- ...................
28 -- ...................
29 -- ...................
30 -- ...................
31 -- ...................
32 -- ...................
33 -- ...................
34 -- ...................
35 -- ...................
36 -- ...................
37 -- ...................
38 -- ...................
39 -- ...................
40 -- ...................
41 -- ...................
42 -- ...................
43 -- ...................
44 -- ...................
45 -- ...................
46 -- ...................
47 -- ...................
48 -- ...................
49 -- ...................
50 -- ...................
51 -- ...................
52 -- ...................
53 -- ...................
54 -- ...................
55 -- ...................
56 -- ...................
57 -- ...................
58 -- ...................
59 -- ...................
60 -- ...................
61 -- ...................
62 -- ...................
63 -- ...................
64 -- ...................
65 -- ...................
66 -- ...................
67 -- ...................
68 -- ...................
69 -- ...................
70 -- ...................
71 -- ...................
72 -- *..................
73 -- .*.................
74 -- ..*................
75 -- ...*...............
76 -- ....*..............
77 -- .....*.............
78 -- ......*............
79 -- .......*...........
80 -- ........*..........
81 -- .........*.........
82 -- ..........*........
83 -- ...........*.......
84 -- ............*......
85 -- .............*.....
86 -- ..............*....
87 -- ...............*...
88 -- ................*..
89 -- .................*.
90 -- ..................*
91 -- .......*...........
92 -- ..................*
93 -- ...................
94 -- ...................
95 -- .*.................
96 -- ..*...*..*.......*.
97 -- *..................
98 -- ****..*..*...*...*.
99 -- ...................
100 -- ......*............
101 -- ****..*..*...*...*.
102 -- ...*...............
103 -- ..*...*..*.......*.
104 -- .............*.....
105 -- ...................
106 -- ****.***.**..*...**
107 -- ...................
108 -- ****.***.**.**...**
109 -- ****..**.**..*...**
110 -- ...................
111 -- ....*......*....*..
112 -- ****.***.**.**...**
113 -- ..............*....
114 -- ****..*..**..*...*.
115 -- .......*..........*
116 -- ****.***.**.**...**
117 -- ...................
118 -- ...................
119 -- ****..*..**..*...*.
120 -- ****.******.****.**
121 -- ............*......
122 -- ****.***.**.**...**
123 -- ...................
124 -- ...................
125 -- ****..*..**..*...*.
126 -- ****.******.**...**
127 -- .......*..........*
128 -- ...................
129 -- .*.................
130 -- ****..*..**..*...*.
131 -- .......*..........*
132 -- ****..*..**..*...*.
133 -- .............*.....
134 -- ****..*..*...*...*.
135 -- ****..*..*...*...*.
136 -- .......*...........
137 -- ..*...*..*.......*.
138 -- ..*...*..*.......*.
139 -- ..*...*..*...*...*.
140 -- ...................
141 -- ...................
142 -- ****..**.**..*...**
143 -- ...................
144 -- .....*.............
145 -- ****.******.**...**
146 -- ...................
147 -- ...................
148 -- ...................
149 -- ...................
150 -- ...................
151 -- ...................
152 -- ..*...*..*.......*.
153 -- ****.***.**..*...**
154 -- ...................
155 -- ****..**.**..*...**
156 -- ****.***.**.**...**
157 -- ........*..........
158 -- ...................
159 -- **.*...............
160 -- .......*...........
161 -- *..................
162 -- ...................
163 -- ...................
164 -- .............*.....
165 -- ...................
166 -- ..*...*..*...*...*.
167 -- ..*...*..*...*...*.
168 -- ..*...*..*...*...*.
169 -- ..*...*..*...*...*.
170 -- ****..**.**..*...**
171 -- ...................
172 -- ..*......*.......*.
173 -- ...................
174 -- ...........*.......
175 -- ...................
176 -- ...........*....*..
177 -- ......*..*.........
178 -- ......*..*.......*.
179 -- ................*..
180 -- ...........*....*..
181 -- ............*......
182 -- ..*...*..*.........
183 -- .........*.........
184 -- .................*.
185 -- ...................
186 -- *..*...............
187 -- ..*................
188 -- ....*......*....*..
189 -- ............*......
190 -- ....*..............
191 -- ............*......
192 -- ...................
193 -- ............*......
194 -- ............*......
195 -- ..*......*.........
196 -- ....*......*.......
197 -- ..*...*..........*.
198 -- ......*..........*.
199 -- ............*......
200 -- ....*...........*..
201 -- ....*......*....*..
202 -- ............*......
203 -- ....*......*.......
204 -- ...................
205 -- ..*..............*.
206 -- ..*...*..*.......*.
207 -- ................*..
208 -- ...................
209 -- ....*...........*..
210 -- ......*............
211 -- ...................
212 -- ....*..............
213 -- .........*.......*.
214 -- ...........*.......
215 -- ............*......
216 -- ...................
217 -- ..*...*............
218 -- ...................
219 -- ...................
220 -- ...*.........*.....
221 -- .*.*...............
222 -- ..*...*..*.......*.
223 -- ..*...*..*.......*.
224 -- ...............*...
225 -- ...............*...
226 -- ...................
227 -- ...............*...
228 -- ..............*....
229 -- ****.******.***..**
230 -- ****..*..**..*...*.
231 -- ...................
232 -- ..............*....
233 -- ****.******.****.**
234 -- ...................
235 -- .......*..........*
236 -- ...................
237 -- **.................
238 -- ...*.........*.....
239 -- ..............**...
240 -- ****.******.**.*.**
241 -- ****.******.**...**
242 -- ****..*..*...*...*.
--------------------------------------------------------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
-----------------------------------------------------------------
91 3002 1.000000 0.000000 1.000000 1.000000 2
92 3002 1.000000 0.000000 1.000000 1.000000 2
93 3002 1.000000 0.000000 1.000000 1.000000 2
94 3002 1.000000 0.000000 1.000000 1.000000 2
95 3002 1.000000 0.000000 1.000000 1.000000 2
96 3002 1.000000 0.000000 1.000000 1.000000 2
97 3002 1.000000 0.000000 1.000000 1.000000 2
98 3002 1.000000 0.000000 1.000000 1.000000 2
99 3002 1.000000 0.000000 1.000000 1.000000 2
100 3002 1.000000 0.000000 1.000000 1.000000 2
101 3002 1.000000 0.000000 1.000000 1.000000 2
102 3002 1.000000 0.000000 1.000000 1.000000 2
103 3002 1.000000 0.000000 1.000000 1.000000 2
104 3002 1.000000 0.000000 1.000000 1.000000 2
105 3002 1.000000 0.000000 1.000000 1.000000 2
106 3002 1.000000 0.000000 1.000000 1.000000 2
107 3002 1.000000 0.000000 1.000000 1.000000 2
108 3002 1.000000 0.000000 1.000000 1.000000 2
109 3002 1.000000 0.000000 1.000000 1.000000 2
110 3002 1.000000 0.000000 1.000000 1.000000 2
111 3001 0.999667 0.000471 0.999334 1.000000 2
112 2998 0.998668 0.000000 0.998668 0.998668 2
113 2997 0.998334 0.002355 0.996669 1.000000 2
114 2991 0.996336 0.001413 0.995336 0.997335 2
115 2979 0.992338 0.001413 0.991339 0.993338 2
116 2975 0.991006 0.001413 0.990007 0.992005 2
117 2953 0.983678 0.003298 0.981346 0.986009 2
118 2923 0.973684 0.006124 0.969354 0.978015 2
119 2844 0.947368 0.004711 0.944037 0.950700 2
120 2837 0.945037 0.003298 0.942705 0.947368 2
121 2834 0.944037 0.004711 0.940706 0.947368 2
122 2638 0.878748 0.019786 0.864757 0.892738 2
123 2595 0.864424 0.022141 0.848767 0.880080 2
124 2569 0.855763 0.040985 0.826782 0.884744 2
125 2161 0.719853 0.002355 0.718188 0.721519 2
126 2144 0.714191 0.016017 0.702865 0.725516 2
127 2053 0.683877 0.015546 0.672885 0.694870 2
128 2036 0.678215 0.015075 0.667555 0.688874 2
129 1957 0.651899 0.035332 0.626915 0.676882 2
130 1948 0.648901 0.007537 0.643571 0.654231 2
131 1832 0.610260 0.027323 0.590939 0.629580 2
132 1668 0.555630 0.014133 0.545636 0.565623 2
133 1578 0.525650 0.020728 0.510993 0.540306 2
134 1549 0.515989 0.018373 0.502998 0.528981 2
135 1547 0.515323 0.001413 0.514324 0.516322 2
136 1431 0.476682 0.001413 0.475683 0.477682 2
137 1224 0.407728 0.005653 0.403731 0.411726 2
138 1139 0.379414 0.004240 0.376416 0.382412 2
139 1101 0.366755 0.052291 0.329780 0.403731 2
140 1046 0.348434 0.004711 0.345103 0.351765 2
141 1035 0.344770 0.006124 0.340440 0.349101 2
142 1027 0.342105 0.007066 0.337109 0.347102 2
143 1026 0.341772 0.011306 0.333777 0.349767 2
144 1014 0.337775 0.020728 0.323118 0.352432 2
145 1011 0.336775 0.005182 0.333111 0.340440 2
146 1008 0.335776 0.010364 0.328448 0.343105 2
147 1007 0.335443 0.018373 0.322452 0.348434 2
148 987 0.328781 0.008009 0.323118 0.334444 2
149 984 0.327781 0.001884 0.326449 0.329114 2
150 983 0.327448 0.004240 0.324450 0.330446 2
151 930 0.309793 0.006595 0.305130 0.314457 2
152 923 0.307462 0.012719 0.298468 0.316456 2
153 907 0.302132 0.018373 0.289141 0.315123 2
154 893 0.297468 0.068308 0.249167 0.345769 2
155 842 0.280480 0.020728 0.265823 0.295137 2
156 839 0.279480 0.003298 0.277149 0.281812 2
157 827 0.275483 0.006124 0.271153 0.279813 2
158 825 0.274817 0.009893 0.267821 0.281812 2
159 782 0.260493 0.081970 0.202532 0.318454 2
160 746 0.248501 0.011306 0.240506 0.256496 2
161 711 0.236842 0.041927 0.207195 0.266489 2
162 707 0.235510 0.009893 0.228514 0.242505 2
163 686 0.228514 0.005653 0.224517 0.232512 2
164 683 0.227515 0.031563 0.205197 0.249833 2
165 658 0.219187 0.020728 0.204530 0.233844 2
166 568 0.189207 0.027323 0.169887 0.208528 2
167 547 0.182212 0.064539 0.136576 0.227848 2
168 530 0.176549 0.010364 0.169221 0.183877 2
169 500 0.166556 0.035803 0.141239 0.191872 2
170 491 0.163558 0.011777 0.155230 0.171885 2
171 481 0.160227 0.049464 0.125250 0.195203 2
172 476 0.158561 0.013191 0.149234 0.167888 2
173 472 0.157229 0.015075 0.146569 0.167888 2
174 463 0.154231 0.001413 0.153231 0.155230 2
175 459 0.152898 0.005182 0.149234 0.156562 2
176 451 0.150233 0.001413 0.149234 0.151233 2
177 448 0.149234 0.009422 0.142572 0.155896 2
178 444 0.147901 0.008480 0.141905 0.153897 2
179 443 0.147568 0.013662 0.137908 0.157229 2
180 442 0.147235 0.003769 0.144570 0.149900 2
181 442 0.147235 0.016959 0.135243 0.159227 2
182 441 0.146902 0.000471 0.146569 0.147235 2
183 440 0.146569 0.001884 0.145237 0.147901 2
184 440 0.146569 0.011306 0.138574 0.154564 2
185 440 0.146569 0.010364 0.139241 0.153897 2
186 440 0.146569 0.028265 0.126582 0.166556 2
187 440 0.146569 0.006595 0.141905 0.151233 2
188 433 0.144237 0.021199 0.129247 0.159227 2
189 432 0.143904 0.004711 0.140573 0.147235 2
190 432 0.143904 0.001884 0.142572 0.145237 2
191 430 0.143238 0.000942 0.142572 0.143904 2
192 429 0.142905 0.039101 0.115256 0.170553 2
193 428 0.142572 0.013191 0.133245 0.151899 2
194 425 0.141572 0.010835 0.133911 0.149234 2
195 424 0.141239 0.007537 0.135909 0.146569 2
196 424 0.141239 0.006595 0.136576 0.145903 2
197 423 0.140906 0.005182 0.137242 0.144570 2
198 423 0.140906 0.001413 0.139907 0.141905 2
199 422 0.140573 0.002827 0.138574 0.142572 2
200 421 0.140240 0.017430 0.127915 0.152565 2
201 418 0.139241 0.009422 0.132578 0.145903 2
202 416 0.138574 0.010364 0.131246 0.145903 2
203 416 0.138574 0.000000 0.138574 0.138574 2
204 416 0.138574 0.002827 0.136576 0.140573 2
205 416 0.138574 0.011306 0.130580 0.146569 2
206 415 0.138241 0.010835 0.130580 0.145903 2
207 415 0.138241 0.008009 0.132578 0.143904 2
208 415 0.138241 0.020257 0.123917 0.152565 2
209 412 0.137242 0.008480 0.131246 0.143238 2
210 412 0.137242 0.006595 0.132578 0.141905 2
211 407 0.135576 0.024026 0.118588 0.152565 2
212 404 0.134577 0.011306 0.126582 0.142572 2
213 402 0.133911 0.008480 0.127915 0.139907 2
214 401 0.133578 0.010835 0.125916 0.141239 2
215 400 0.133245 0.009422 0.126582 0.139907 2
216 400 0.133245 0.000000 0.133245 0.133245 2
217 400 0.133245 0.001884 0.131912 0.134577 2
218 397 0.132245 0.002355 0.130580 0.133911 2
219 387 0.128914 0.000471 0.128581 0.129247 2
220 380 0.126582 0.010364 0.119254 0.133911 2
221 367 0.122252 0.016488 0.110593 0.133911 2
222 341 0.113591 0.005182 0.109927 0.117255 2
223 335 0.111592 0.000471 0.111259 0.111925 2
224 333 0.110926 0.002355 0.109260 0.112592 2
225 327 0.108927 0.011777 0.100600 0.117255 2
226 324 0.107928 0.010364 0.100600 0.115256 2
227 323 0.107595 0.004240 0.104597 0.110593 2
228 322 0.107262 0.001884 0.105929 0.108594 2
229 322 0.107262 0.005653 0.103264 0.111259 2
230 320 0.106596 0.016017 0.095270 0.117921 2
231 315 0.104930 0.002355 0.103264 0.106596 2
232 309 0.102931 0.000471 0.102598 0.103264 2
233 309 0.102931 0.000471 0.102598 0.103264 2
234 309 0.102931 0.006124 0.098601 0.107262 2
235 308 0.102598 0.011306 0.094604 0.110593 2
236 301 0.100266 0.013662 0.090606 0.109927 2
237 297 0.098934 0.026852 0.079947 0.117921 2
238 295 0.098268 0.006124 0.093937 0.102598 2
239 293 0.097602 0.011777 0.089274 0.105929 2
240 290 0.096602 0.009422 0.089940 0.103264 2
241 288 0.095936 0.028265 0.075949 0.115923 2
242 274 0.091272 0.018844 0.077948 0.104597 2
-----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
--------------------------------------------------------------------------------------------
length{all}[1] 0.001351 0.000002 0.000003 0.003908 0.000959 1.001 2
length{all}[2] 0.001265 0.000002 0.000000 0.003760 0.000836 1.001 2
length{all}[3] 0.001242 0.000002 0.000001 0.003713 0.000831 1.000 2
length{all}[4] 0.001254 0.000002 0.000000 0.003905 0.000823 1.000 2
length{all}[5] 0.016358 0.000027 0.007221 0.026304 0.015766 1.000 2
length{all}[6] 0.005255 0.000007 0.000667 0.010099 0.004915 1.001 2
length{all}[7] 0.001276 0.000002 0.000001 0.003921 0.000840 1.000 2
length{all}[8] 0.001247 0.000002 0.000000 0.003633 0.000880 1.001 2
length{all}[9] 0.001311 0.000002 0.000000 0.003775 0.000902 1.006 2
length{all}[10] 0.022755 0.000041 0.011304 0.034947 0.021927 1.001 2
length{all}[11] 0.019395 0.000034 0.008521 0.030610 0.018793 1.000 2
length{all}[12] 0.002538 0.000003 0.000115 0.005959 0.002107 1.004 2
length{all}[13] 0.016071 0.000025 0.007079 0.025903 0.015452 1.000 2
length{all}[14] 0.001301 0.000002 0.000002 0.003810 0.000885 1.000 2
length{all}[15] 0.021479 0.000040 0.009849 0.033730 0.020683 1.000 2
length{all}[16] 0.001434 0.000002 0.000000 0.004260 0.000983 1.000 2
length{all}[17] 0.001343 0.000002 0.000001 0.004179 0.000914 1.000 2
length{all}[18] 0.014835 0.000023 0.006251 0.024174 0.014552 1.000 2
length{all}[19] 0.003777 0.000008 0.000040 0.009464 0.003056 1.000 2
length{all}[20] 0.001297 0.000002 0.000000 0.003704 0.000967 1.001 2
length{all}[21] 0.018141 0.000033 0.006928 0.029266 0.017734 1.003 2
length{all}[22] 0.001537 0.000002 0.000001 0.004668 0.001099 1.000 2
length{all}[23] 0.001288 0.000002 0.000000 0.003947 0.000900 1.000 2
length{all}[24] 0.017690 0.000032 0.007706 0.029540 0.017013 1.003 2
length{all}[25] 0.003624 0.000007 0.000054 0.008741 0.003044 1.000 2
length{all}[26] 0.009359 0.000022 0.001887 0.018421 0.008497 1.000 2
length{all}[27] 0.002604 0.000003 0.000062 0.006253 0.002096 1.005 2
length{all}[28] 0.020092 0.000034 0.009688 0.031164 0.019849 1.000 2
length{all}[29] 0.001928 0.000004 0.000001 0.005935 0.001312 1.000 2
length{all}[30] 0.001313 0.000002 0.000001 0.003909 0.000905 1.000 2
length{all}[31] 0.019263 0.000032 0.008816 0.030042 0.018626 1.000 2
length{all}[32] 0.002444 0.000003 0.000054 0.006025 0.002056 1.004 2
length{all}[33] 0.002564 0.000004 0.000027 0.006128 0.002116 1.005 2
length{all}[34] 0.013253 0.000021 0.005263 0.022559 0.012764 1.000 2
length{all}[35] 0.001304 0.000002 0.000001 0.003931 0.000903 1.000 2
length{all}[36] 0.001264 0.000002 0.000000 0.004043 0.000842 1.000 2
length{all}[37] 0.001342 0.000002 0.000001 0.004167 0.000896 1.000 2
length{all}[38] 0.001262 0.000002 0.000001 0.003802 0.000889 1.001 2
length{all}[39] 0.023588 0.000044 0.010777 0.035870 0.022832 1.001 2
length{all}[40] 0.038340 0.000070 0.023328 0.055950 0.037762 1.003 2
length{all}[41] 0.001321 0.000002 0.000001 0.003747 0.000964 1.000 2
length{all}[42] 0.001306 0.000002 0.000001 0.003871 0.000885 1.000 2
length{all}[43] 0.001281 0.000002 0.000000 0.003864 0.000867 1.000 2
length{all}[44] 0.002466 0.000003 0.000057 0.005671 0.002066 1.000 2
length{all}[45] 0.001245 0.000001 0.000000 0.003756 0.000896 1.000 2
length{all}[46] 0.001304 0.000002 0.000002 0.003888 0.000903 1.000 2
length{all}[47] 0.001321 0.000002 0.000001 0.003893 0.000967 1.001 2
length{all}[48] 0.002633 0.000003 0.000103 0.006233 0.002193 1.000 2
length{all}[49] 0.001257 0.000001 0.000001 0.003709 0.000900 1.000 2
length{all}[50] 0.001261 0.000002 0.000000 0.003615 0.000905 1.000 2
length{all}[51] 0.001365 0.000002 0.000001 0.004116 0.000914 1.000 2
length{all}[52] 0.014508 0.000023 0.006200 0.024467 0.013938 1.002 2
length{all}[53] 0.004126 0.000006 0.000315 0.008690 0.003562 1.000 2
length{all}[54] 0.001291 0.000002 0.000001 0.003962 0.000903 1.000 2
length{all}[55] 0.001369 0.000002 0.000000 0.003887 0.000942 1.000 2
length{all}[56] 0.001360 0.000002 0.000002 0.004069 0.000956 1.002 2
length{all}[57] 0.001459 0.000002 0.000001 0.004043 0.001058 1.000 2
length{all}[58] 0.007607 0.000016 0.000858 0.015274 0.006934 1.000 2
length{all}[59] 0.001334 0.000002 0.000001 0.004106 0.000910 1.000 2
length{all}[60] 0.001301 0.000002 0.000003 0.003929 0.000911 1.000 2
length{all}[61] 0.001290 0.000002 0.000000 0.004069 0.000878 1.000 2
length{all}[62] 0.015495 0.000026 0.006929 0.026028 0.015061 1.000 2
length{all}[63] 0.015898 0.000023 0.007352 0.025682 0.015217 1.000 2
length{all}[64] 0.001872 0.000004 0.000000 0.005660 0.001248 1.000 2
length{all}[65] 0.001379 0.000002 0.000000 0.004193 0.000912 1.000 2
length{all}[66] 0.019812 0.000042 0.008995 0.032932 0.019132 1.001 2
length{all}[67] 0.001333 0.000002 0.000002 0.004167 0.000899 1.000 2
length{all}[68] 0.001188 0.000002 0.000001 0.003738 0.000776 1.000 2
length{all}[69] 0.001325 0.000002 0.000001 0.004390 0.000840 1.001 2
length{all}[70] 0.016195 0.000032 0.006368 0.027769 0.015430 1.000 2
length{all}[71] 0.001304 0.000002 0.000000 0.003956 0.000904 1.000 2
length{all}[72] 0.017742 0.000027 0.008171 0.028514 0.017162 1.004 2
length{all}[73] 0.001341 0.000002 0.000002 0.003878 0.000963 1.001 2
length{all}[74] 0.001320 0.000002 0.000002 0.003933 0.000930 1.000 2
length{all}[75] 0.001353 0.000002 0.000000 0.003882 0.000958 1.000 2
length{all}[76] 0.001188 0.000001 0.000000 0.003497 0.000832 1.000 2
length{all}[77] 0.001380 0.000002 0.000002 0.004061 0.000930 1.003 2
length{all}[78] 0.001385 0.000002 0.000001 0.004065 0.000971 1.000 2
length{all}[79] 0.001244 0.000002 0.000001 0.003746 0.000875 1.000 2
length{all}[80] 0.003885 0.000005 0.000455 0.008406 0.003456 1.000 2
length{all}[81] 0.003974 0.000005 0.000532 0.008500 0.003567 1.009 2
length{all}[82] 0.015214 0.000027 0.006221 0.025904 0.014707 1.005 2
length{all}[83] 0.003803 0.000005 0.000570 0.008226 0.003493 1.000 2
length{all}[84] 0.001265 0.000002 0.000001 0.003765 0.000855 1.000 2
length{all}[85] 0.001366 0.000002 0.000000 0.004162 0.000898 1.000 2
length{all}[86] 0.001261 0.000002 0.000000 0.003745 0.000885 1.000 2
length{all}[87] 0.001212 0.000001 0.000000 0.003557 0.000822 1.000 2
length{all}[88] 0.001303 0.000002 0.000000 0.003954 0.000904 1.000 2
length{all}[89] 0.001384 0.000002 0.000001 0.003948 0.000983 1.000 2
length{all}[90] 0.006022 0.000012 0.000654 0.012817 0.005293 1.002 2
length{all}[91] 0.009661 0.000020 0.002017 0.018170 0.009056 1.000 2
length{all}[92] 0.009932 0.000022 0.002331 0.019150 0.009217 1.001 2
length{all}[93] 0.028454 0.000051 0.016283 0.043368 0.027667 1.004 2
length{all}[94] 0.012458 0.000023 0.003991 0.021829 0.011929 1.000 2
length{all}[95] 0.018593 0.000034 0.007885 0.029869 0.017862 1.000 2
length{all}[96] 0.020686 0.000040 0.009074 0.032808 0.020397 1.001 2
length{all}[97] 0.025317 0.000044 0.013409 0.038985 0.024829 1.000 2
length{all}[98] 0.027123 0.000057 0.013298 0.042146 0.026402 1.002 2
length{all}[99] 0.017620 0.000040 0.006381 0.029874 0.016927 1.000 2
length{all}[100] 0.023648 0.000039 0.011927 0.035241 0.022972 1.001 2
length{all}[101] 0.087226 0.000211 0.058986 0.113647 0.086393 1.000 2
length{all}[102] 0.011814 0.000019 0.003948 0.020661 0.011327 1.004 2
length{all}[103] 0.013175 0.000027 0.003825 0.023422 0.012488 1.001 2
length{all}[104] 0.022141 0.000042 0.010604 0.034815 0.021365 1.001 2
length{all}[105] 0.011890 0.000025 0.003007 0.021034 0.011134 1.000 2
length{all}[106] 0.007796 0.000012 0.002129 0.014769 0.007250 1.003 2
length{all}[107] 0.016256 0.000027 0.007329 0.026937 0.015714 1.000 2
length{all}[108] 0.009558 0.000014 0.003116 0.017230 0.009162 1.005 2
length{all}[109] 0.017323 0.000032 0.006589 0.028213 0.016932 1.002 2
length{all}[110] 0.007948 0.000010 0.002101 0.014031 0.007496 1.000 2
length{all}[111] 0.003863 0.000005 0.000477 0.008317 0.003466 1.004 2
length{all}[112] 0.004957 0.000008 0.000656 0.010409 0.004468 1.000 2
length{all}[113] 0.004940 0.000006 0.000692 0.009926 0.004532 1.001 2
length{all}[114] 0.014805 0.000029 0.005142 0.025229 0.014254 1.009 2
length{all}[115] 0.007098 0.000014 0.001006 0.014344 0.006516 1.000 2
length{all}[116] 0.006397 0.000011 0.000888 0.012984 0.005875 1.000 2
length{all}[117] 0.002536 0.000003 0.000094 0.005856 0.002203 1.004 2
length{all}[118] 0.002732 0.000004 0.000116 0.006580 0.002293 1.001 2
length{all}[119] 0.008549 0.000019 0.001257 0.016994 0.007756 1.000 2
length{all}[120] 0.002645 0.000003 0.000182 0.006290 0.002194 1.000 2
length{all}[121] 0.002677 0.000003 0.000095 0.006265 0.002266 1.000 2
length{all}[122] 0.002851 0.000004 0.000001 0.007103 0.002395 1.002 2
length{all}[123] 0.002536 0.000003 0.000061 0.006270 0.002154 1.000 2
length{all}[124] 0.003609 0.000005 0.000064 0.008089 0.003151 1.000 2
length{all}[125] 0.007647 0.000016 0.000927 0.015679 0.006920 1.000 2
length{all}[126] 0.002464 0.000003 0.000005 0.005828 0.002078 1.000 2
length{all}[127] 0.004510 0.000010 0.000005 0.010382 0.003880 1.000 2
length{all}[128] 0.006824 0.000016 0.000665 0.014500 0.006110 1.000 2
length{all}[129] 0.007605 0.000015 0.000864 0.015211 0.007084 1.000 2
length{all}[130] 0.006989 0.000017 0.000075 0.014769 0.006519 1.000 2
length{all}[131] 0.004586 0.000008 0.000218 0.010082 0.004126 0.999 2
length{all}[132] 0.006416 0.000016 0.000046 0.013881 0.005952 1.000 2
length{all}[133] 0.006217 0.000011 0.000675 0.012751 0.005612 1.000 2
length{all}[134] 0.004064 0.000006 0.000006 0.008857 0.003554 1.001 2
length{all}[135] 0.005921 0.000015 0.000171 0.014007 0.005264 1.002 2
length{all}[136] 0.002250 0.000004 0.000001 0.006492 0.001581 0.999 2
length{all}[137] 0.006578 0.000014 0.000067 0.013693 0.005919 0.999 2
length{all}[138] 0.003770 0.000010 0.000000 0.009885 0.003121 1.001 2
length{all}[139] 0.006255 0.000012 0.000341 0.012533 0.005812 1.000 2
length{all}[140] 0.002236 0.000005 0.000002 0.006845 0.001548 0.999 2
length{all}[141] 0.001278 0.000002 0.000003 0.004052 0.000817 1.003 2
length{all}[142] 0.001642 0.000002 0.000002 0.004887 0.001130 0.999 2
length{all}[143] 0.002172 0.000004 0.000008 0.006230 0.001547 0.999 2
length{all}[144] 0.001599 0.000002 0.000000 0.004545 0.001179 1.002 2
length{all}[145] 0.001730 0.000003 0.000003 0.004928 0.001244 1.000 2
length{all}[146] 0.001190 0.000002 0.000000 0.003765 0.000788 1.004 2
length{all}[147] 0.001269 0.000001 0.000000 0.003495 0.000959 0.999 2
length{all}[148] 0.001275 0.000002 0.000005 0.003721 0.000868 1.002 2
length{all}[149] 0.001348 0.000002 0.000000 0.004193 0.000883 1.000 2
length{all}[150] 0.001308 0.000002 0.000003 0.004030 0.000878 1.000 2
length{all}[151] 0.002142 0.000005 0.000002 0.007029 0.001363 1.004 2
length{all}[152] 0.005824 0.000012 0.000656 0.013212 0.005226 0.999 2
length{all}[153] 0.001499 0.000002 0.000001 0.004277 0.001057 1.000 2
length{all}[154] 0.002962 0.000005 0.000019 0.007412 0.002456 0.999 2
length{all}[155] 0.004744 0.000013 0.000057 0.011693 0.003954 0.999 2
length{all}[156] 0.001517 0.000002 0.000004 0.004408 0.001149 0.999 2
length{all}[157] 0.001473 0.000002 0.000002 0.004352 0.001062 0.999 2
length{all}[158] 0.001364 0.000002 0.000002 0.003970 0.000946 0.999 2
length{all}[159] 0.004324 0.000009 0.000342 0.010321 0.003534 0.999 2
length{all}[160] 0.001302 0.000002 0.000001 0.003852 0.000924 0.999 2
length{all}[161] 0.004706 0.000010 0.000106 0.011161 0.004040 1.003 2
length{all}[162] 0.005371 0.000019 0.000009 0.013939 0.004364 0.999 2
length{all}[163] 0.006671 0.000013 0.000259 0.013668 0.006133 1.002 2
length{all}[164] 0.008514 0.000021 0.000574 0.018153 0.007672 1.003 2
length{all}[165] 0.003869 0.000008 0.000006 0.009648 0.003341 0.999 2
length{all}[166] 0.003243 0.000007 0.000166 0.008711 0.002706 1.008 2
length{all}[167] 0.003318 0.000007 0.000017 0.008460 0.002662 1.003 2
length{all}[168] 0.003393 0.000009 0.000000 0.009463 0.002519 1.006 2
length{all}[169] 0.004083 0.000007 0.000093 0.008525 0.003662 1.015 2
length{all}[170] 0.004367 0.000009 0.000060 0.009950 0.003819 1.000 2
length{all}[171] 0.004069 0.000008 0.000030 0.009563 0.003397 0.999 2
length{all}[172] 0.001452 0.000002 0.000002 0.004239 0.001004 0.998 2
length{all}[173] 0.001156 0.000001 0.000000 0.003594 0.000830 1.010 2
length{all}[174] 0.001226 0.000002 0.000000 0.003684 0.000773 0.998 2
length{all}[175] 0.001258 0.000001 0.000000 0.003570 0.000850 0.998 2
length{all}[176] 0.001212 0.000001 0.000001 0.003689 0.000780 1.005 2
length{all}[177] 0.001447 0.000002 0.000006 0.004040 0.001069 0.998 2
length{all}[178] 0.001424 0.000002 0.000002 0.004396 0.000902 1.004 2
length{all}[179] 0.001291 0.000002 0.000008 0.003418 0.000821 0.998 2
length{all}[180] 0.001200 0.000002 0.000000 0.003513 0.000765 1.000 2
length{all}[181] 0.001306 0.000002 0.000002 0.003969 0.000870 1.006 2
length{all}[182] 0.001406 0.000002 0.000005 0.004208 0.000985 0.998 2
length{all}[183] 0.001347 0.000002 0.000007 0.004029 0.000904 0.998 2
length{all}[184] 0.001324 0.000002 0.000002 0.004332 0.000857 0.999 2
length{all}[185] 0.001371 0.000002 0.000000 0.004981 0.000948 1.000 2
length{all}[186] 0.002380 0.000004 0.000002 0.006659 0.001811 1.009 2
length{all}[187] 0.001357 0.000002 0.000004 0.004041 0.000952 0.998 2
length{all}[188] 0.001167 0.000001 0.000001 0.003505 0.000810 0.998 2
length{all}[189] 0.001332 0.000002 0.000003 0.003791 0.000983 0.998 2
length{all}[190] 0.001329 0.000002 0.000004 0.004171 0.000910 1.007 2
length{all}[191] 0.001303 0.000002 0.000001 0.003848 0.000862 1.017 2
length{all}[192] 0.003787 0.000008 0.000004 0.008883 0.003086 1.027 2
length{all}[193] 0.001232 0.000001 0.000005 0.003454 0.000881 1.002 2
length{all}[194] 0.001258 0.000002 0.000000 0.003845 0.000850 1.000 2
length{all}[195] 0.001442 0.000002 0.000002 0.004495 0.000910 1.010 2
length{all}[196] 0.001247 0.000002 0.000003 0.003601 0.000828 0.998 2
length{all}[197] 0.001474 0.000002 0.000010 0.004943 0.001003 0.998 2
length{all}[198] 0.001380 0.000002 0.000009 0.004036 0.001019 0.998 2
length{all}[199] 0.001253 0.000002 0.000002 0.003933 0.000866 0.998 2
length{all}[200] 0.001244 0.000002 0.000000 0.003676 0.000785 1.005 2
length{all}[201] 0.001225 0.000001 0.000011 0.003534 0.000889 0.998 2
length{all}[202] 0.001316 0.000001 0.000001 0.003450 0.000999 0.999 2
length{all}[203] 0.001323 0.000002 0.000001 0.003745 0.000970 0.998 2
length{all}[204] 0.001293 0.000002 0.000001 0.004221 0.000857 0.998 2
length{all}[205] 0.001430 0.000002 0.000000 0.004604 0.000888 1.000 2
length{all}[206] 0.001356 0.000002 0.000006 0.003840 0.000970 0.998 2
length{all}[207] 0.001291 0.000002 0.000002 0.003836 0.000856 1.004 2
length{all}[208] 0.001406 0.000002 0.000001 0.003889 0.001067 0.999 2
length{all}[209] 0.001348 0.000002 0.000002 0.003941 0.000823 0.998 2
length{all}[210] 0.001345 0.000002 0.000001 0.004274 0.000833 0.998 2
length{all}[211] 0.001288 0.000001 0.000002 0.003893 0.000886 0.998 2
length{all}[212] 0.001358 0.000002 0.000000 0.003927 0.000948 0.998 2
length{all}[213] 0.001459 0.000002 0.000007 0.004613 0.000929 0.998 2
length{all}[214] 0.001265 0.000001 0.000006 0.003643 0.000843 0.998 2
length{all}[215] 0.001253 0.000001 0.000001 0.003556 0.000875 1.005 2
length{all}[216] 0.003127 0.000007 0.000014 0.008506 0.002522 1.007 2
length{all}[217] 0.001453 0.000003 0.000003 0.004527 0.000941 1.003 2
length{all}[218] 0.001298 0.000002 0.000001 0.003768 0.000920 0.999 2
length{all}[219] 0.001262 0.000001 0.000003 0.003860 0.000896 0.999 2
length{all}[220] 0.004298 0.000009 0.000068 0.009740 0.003829 1.006 2
length{all}[221] 0.002410 0.000005 0.000003 0.006930 0.001760 1.003 2
length{all}[222] 0.002988 0.000008 0.000003 0.007917 0.002326 1.002 2
length{all}[223] 0.003137 0.000006 0.000179 0.007991 0.002445 1.027 2
length{all}[224] 0.001086 0.000001 0.000001 0.003142 0.000758 1.000 2
length{all}[225] 0.001305 0.000002 0.000001 0.003498 0.001055 1.003 2
length{all}[226] 0.001326 0.000002 0.000009 0.004026 0.000840 0.997 2
length{all}[227] 0.001381 0.000002 0.000010 0.004172 0.000983 0.998 2
length{all}[228] 0.001143 0.000001 0.000007 0.003289 0.000788 1.004 2
length{all}[229] 0.001351 0.000002 0.000000 0.004018 0.000978 1.007 2
length{all}[230] 0.004909 0.000011 0.000104 0.011505 0.004119 0.997 2
length{all}[231] 0.001220 0.000002 0.000010 0.003703 0.000775 1.003 2
length{all}[232] 0.001403 0.000002 0.000005 0.004163 0.000884 0.997 2
length{all}[233] 0.001132 0.000001 0.000002 0.003256 0.000854 0.998 2
length{all}[234] 0.001332 0.000002 0.000003 0.004049 0.000949 1.001 2
length{all}[235] 0.002930 0.000006 0.000062 0.007761 0.002421 0.997 2
length{all}[236] 0.003003 0.000006 0.000033 0.007666 0.002368 0.998 2
length{all}[237] 0.001732 0.000003 0.000042 0.005250 0.001223 0.999 2
length{all}[238] 0.004967 0.000010 0.000135 0.010933 0.004415 1.001 2
length{all}[239] 0.001126 0.000001 0.000001 0.003406 0.000798 1.008 2
length{all}[240] 0.001133 0.000001 0.000005 0.003184 0.000796 0.997 2
length{all}[241] 0.001394 0.000002 0.000024 0.004113 0.000909 1.000 2
length{all}[242] 0.002968 0.000006 0.000010 0.007740 0.002598 0.999 2
--------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.010878
Maximum standard deviation of split frequencies = 0.081970
Average PSRF for parameter values (excluding NA and >10.0) = 1.001
Maximum PSRF for parameter values = 1.027
Clade credibility values:
Subtree rooted at node 122:
/------------------------- C10 (5)
|
| /----- C70 (7)
| |
| /---100---+----- C32 (29)
| | |
/-------------------61------------------+ | \----- C33 (79)
| | |
| | /-99-+ /----- C26 (19)
| | | | |
| | | | /-100+----- C27 (64)
| | | | | |
| \-68-+ \-100+ \----- C29 (70)
| | |
| | \---------- C25 (90)
| |
| \-------------------- C14 (10)
|
| /----- C17 (9)
| |
| |----- C20 (14)
| |
| |----- C78 (16)
| |
| |----- C23 (20)
| |
| |----- C19 (36)
| /-100+
| | |----- C13 (37)
| | |
| | |----- C24 (41)
| | |
| | |----- C16 (47)
| /----65---+ |
| | | |----- C21 (65)
| | | |
| | | \----- C18 (73)
| | |
| | \---------- C22 (15)
| |
| | /---------- C76 (11)
| | |
| |----53---+ /----- C74 (51)
| | \-100+
| | \----- C72 (85)
| |
| |-------------------- C75 (13)
| |
| |-------------------- C77 (18)
| |
| | /----- C85 (21)
| | /----68---+
| | | \----- C43 (40)
--100+ | |
| | | /----- C6 (56)
| | | /-100+
| /-52-+-100+ | \----- C5 (78)
| | | | |
| | | | |---------- C9 (69)
| | | | |
| | | \-100+---------- C11 (74)
| | | |
| | | |---------- C7 (81)
| | | |
| | | \---------- C8 (89)
| | |
| | | /----- C84 (22)
| | |------100-----+
| | | \----- C83 (72)
| | |
| | |-------------------- C30 (24)
| /-52-+ |
| | | |-------------------- C34 (28)
| | | |
| | | | /----- C35 (30)
| | | |------100-----+
| | | | \----- C37 (55)
| | | |
| | | | /----- C82 (53)
| | | \------100-----+
| /-100+ | \----- C81 (75)
| | | |
| | | | /----- C79 (17)
| | | | /-97-+
| | | | | \----- C80 (71)
| | | \------100-----+
| /-100+ | \---------- C73 (57)
| | | |
| | | \------------------------------ C71 (66)
| | |
| /-100+ | /----- C28 (25)
| | | \-------------100-------------+
| | | \----- C3 (34)
| /-95-+ |
| | | \---------------------------------------- C2 (82)
| | |
| /-72-+ \--------------------------------------------- C1 (62)
| | |
| /-65-+ \-------------------------------------------------- C15 (58)
| | |
\-56-+ \------------------------------------------------------- C4 (39)
|
\------------------------------------------------------------ C87 (26)
Root part of tree:
/---------------------------------------------------------------------- C52 (1)
|
| /------- C58 (23)
| |
| |------- C63 (61)
| |
|------------------------------100-----------------------------+------- C57 (76)
| |
| |------- C64 (83)
| |
| \------- C53 (88)
|
| /-------------- C67 (2)
| |
| | /------- C12 (4)
| | |
| |--98--+------- C68 (8)
| | |
| | \------- C48 (38)
| |
| |-------------- C44 (42)
| |
| /--86--+-------------- C89 (43)
| | |
| | |-------------- C47 (49)
| | |
| | |-------------- C50 (54)
| | |
| | |-------------- C86 (59)
| /--100-+ |
| | | |-------------- C49 (60)
| | | |
| | | \-------------- C46 (68)
| | |
+ | |--------------------- (122)
| | |
| /--99--+ \--------------------- C92 (77)
| | |
| | | /------- C69 (6)
| | | |
| | | |------- C88 (27)
| | | |
| | \---------94---------+------- C40 (33)
| /--100-+ |
| | | |------- C31 (35)
| | | |
| | | \------- C91 (84)
| | |
| /--100-+ | /------- C39 (32)
| | | \------------100------------+
| | | \------- C45 (50)
| | |
| /--88--+ \------------------------------------------ C38 (31)
| | |
| | | /------- C42 (52)
| | \--------------------86-------------------+
| | \------- C41 (63)
| |
| /--71--+ /------- C66 (3)
| | | |
| | |-----------------------100----------------------+------- C59 (12)
| | | |
| | | \------- C60 (45)
| | |
| | \-------------------------------------------------------- C56 (80)
| |
| |--------------------------------------------------------------- C55 (44)
\--95--+
|--------------------------------------------------------------- C61 (46)
|
|--------------------------------------------------------------- C54 (48)
|
| /------- C62 (67)
|--------------------------100--------------------------+
| \------- C51 (86)
|
\--------------------------------------------------------------- C65 (87)
Phylogram (based on average branch lengths):
/ C52 (1)
|
|/ C58 (23)
||
|| C63 (61)
||
|+ C57 (76)
||
||- C64 (83)
||
|\ C53 (88)
|
| / C67 (2)
| |
| |/ C12 (4)
| ||
| |+ C68 (8)
| ||
| |\ C48 (38)
| |
| | C44 (42)
| |
| | C89 (43)
| |
| | C47 (49)
| |
| | C50 (54)
| |
| | C86 (59)
| |
| | C49 (60)
| |
| | C46 (68)
| |
| | /---- C10 (5)
| | |
| | | / C70 (7)
| | | |
| | | /-+- C32 (29)
| | | | |
| | /+ | \ C33 (79)
| | || |
| | ||/-+ /- C26 (19)
| | ||| | |
| | ||| | /--+ C27 (64)
| | ||| | | |
| | |\+ \-+ \---- C29 (70)
| | | | |
| | | | \-- C25 (90)
| | | |
| | | \------ C14 (10)
| | |
| | | / C17 (9)
| | | |
| | | | C20 (14)
| | | |
| | | | C78 (16)
| | | |
| | | | C23 (20)
| | | |
| | | | C19 (36)
| | | /----+
| | | | | C13 (37)
| | | | |
| | | | | C24 (41)
| | | | |
| | | | | C16 (47)
| | | /-+ |
| | | | | | C21 (65)
| | | | | |
| | | | | \ C18 (73)
| | | | |
| | | | \------ C22 (15)
| | | |
| | | | /----- C76 (11)
| | | | |
| | | |-+ /- C74 (51)
| | | | \----+
| | | | \- C72 (85)
| | | |
| /-+ | |---- C75 (13)
| | | | |
| | | | |---- C77 (18)
| | | | |
+ | | | | /----- C85 (21)
| | | | | /+
| | | | | |\---------- C43 (40)
| | |---+ | |
| | | | | | / C6 (56)
| | | | | | /-----+
| | | | /+---+ | \ C5 (78)
| | | | || | |
| | | | || | | C9 (69)
| | | | || | |
| | | | || \----+ C11 (74)
| | | | || |
| | | | || |- C7 (81)
| | | | || |
| | | | || \ C8 (89)
| | | | ||
| | | | || / C84 (22)
| | | | ||------+
| | | | || \---- C83 (72)
| | | | ||
| | | | ||----- C30 (24)
| | | | /+|
| | | | |||------ C34 (28)
| | | | |||
| | | | ||| /- C35 (30)
| | | | |||---+
| | | | ||| \- C37 (55)
| | | | |||
| /-+ | | ||| /- C82 (53)
| | | | | ||\--+
| | | | | /---------------------+| \- C81 (75)
| | | | | | ||
| | | | | | || / C79 (17)
| | | | | | || |
| | | | | | || | C80 (71)
| | | | | | |\---+
| | | | | /------+ | \ C73 (57)
| | | | | | | |
| | | | | | | \----- C71 (66)
| | | | | | |
| | | | | /---+ | /- C28 (25)
| | | | | | | \---+
| | | | | | | \--- C3 (34)
| | | | | /-+ |
| | | | | | | \---- C2 (82)
| | | | | | |
| | | | | /-+ \---- C1 (62)
| | | | | | |
| /-+ | | | /+ \-- C15 (58)
| | | | | | ||
| | | | | \-+\------ C4 (39)
| | | | | |
| | | | | \-- C87 (26)
| | | | |
| | | | \ C92 (77)
| | | |
| | | |-- C69 (6)
| | | |
| | | |- C88 (27)
| /+ | |
| || | |- C40 (33)
| || | |
| || | |- C31 (35)
| || | |
| || | \- C91 (84)
| || |
|/+| | /- C39 (32)
|||| \------+
|||| \- C45 (50)
||||
|||\----- C38 (31)
|||
|||/--- C42 (52)
||\+
|| \--- C41 (63)
||
|| / C66 (3)
|| |
||-+- C59 (12)
|| |
|| \ C60 (45)
||
||- C56 (80)
||
\+ C55 (44)
|
| C61 (46)
|
| C54 (48)
|
|/ C62 (67)
|+
|\ C51 (86)
|
\ C65 (87)
|-----------| 0.050 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3002 trees sampled):
50 % credible set contains 1501 trees
90 % credible set contains 2702 trees
95 % credible set contains 2852 trees
99 % credible set contains 2972 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
Running FUBAR...
[2J[H /HYPHY 2.3.14.20190214beta(MP) for Linux on x86_64\
***************** TYPES OF STANDARD ANALYSES *****************
(1) Selection Analyses
(2) Evolutionary Hypothesis Testing
(3) Relative evolutionary rate inference
(4) Coevolutionary analysis
(5) Basic Analyses
(6) Codon Selection Analyses
(7) Compartmentalization
(8) Data File Tools
(9) Miscellaneous
(10) Model Comparison
(11) Kernel Analysis Tools
(12) Molecular Clock
(13) Phylogeny Reconstruction
(14) Positive Selection
(15) Recombination
(16) Selection/Recombination
(17) Relative Rate
(18) Relative Ratio
(19) Substitution Rates
Please select type of analyses you want to list (or press ENTER to process custom batch file):[2J[H***************** FILES IN 'Selection Analyses' *****************
(1) [MEME] Test for episodic site-level selection using MEME (Mixed Effects Model of Evolution).
(2) [FEL] Test for pervasive site-level selection using FEL (Fixed Effects Likelihood).
(3) [SLAC] Test for pervasive site-level selection using SLAC (Single Likelihood Ancestor Counting).
(4) [FUBAR] Test for pervasive site-level selection using FUBAR (Fast Unconstrained Bayesian AppRoximation for inferring selection).
(5) [BUSTED] Test for episodic gene-wide selection using BUSTED (Branch-site Unrestricted Statistical Test of Episodic Diversification).
(6) [aBSREL] Test for lineage-specific evolution using the branch-site method aBS-REL (Adaptive Branch-Site Random Effects Likelihood).
(7) [RELAX] Test for relaxation of selection pressure along a specified set of test branches using RELAX (a random effects test of selection relaxation).
Please select the analysis you would like to perform (or press ENTER to return to the list of analysis types):
Analysis Description
--------------------
Perform a Fast Unbiased AppRoximate Bayesian (FUBAR) analysis of a
coding sequence alignment to determine whether some sites have been
subject to pervasive purifying or diversifying selection. v2.1
introduces two more methods for estimating the posterior distribution of
grid weights: collapsed Gibbs MCMC (faster) and 0-th order Variation
Bayes approximation (fastest). Please note that a FUBAR analysis
generates a cache and a results JSON file in the same directory as
directory as the original alignment. HyPhy needs to have write
privileges to this directory. For example if the original file is in
/home/sergei/FUBAR/data/pol.nex then at the end of a FUBAR run, there
will also exist FUBAR-generated files
/home/sergei/FUBAR/data/pol.nex.FUBAR.json,
/home/sergei/FUBAR/data/pol.nex.fubrar.cache. They also provide
checkpointing so that a partially completed analysis can be restarted.
- __Requirements__: in-frame codon alignment (possibly partitioned) and a phylogenetic tree
(one per partition)
- __Citation__: FUBAR: a fast, unconstrained bayesian approximation for inferring
selection (2013), Mol Biol Evol. 30(5):1196-205
- __Written by__: Sergei L Kosakovsky Pond
- __Contact Information__: spond@temple.edu
- __Analysis Version__: 2.1
####Choose Genetic Code
1. [**Universal**] Universal code. (Genebank transl_table=1).
2. [**Vertebrate mtDNA**] Vertebrate mitochondrial DNA code. (Genebank transl_table=2).
3. [**Yeast mtDNA**] Yeast mitochondrial DNA code. (Genebank transl_table=3).
4. [**Mold/Protozoan mtDNA**] Mold, Protozoan and Coelenterate mitochondrial DNA and the Mycloplasma/Spiroplasma code. (Genebank transl_table=4).
5. [**Invertebrate mtDNA**] Invertebrate mitochondrial DNA code. (Genebank transl_table=5).
6. [**Ciliate Nuclear**] Ciliate, Dasycladacean and Hexamita Nuclear code. (Genebank transl_table=6).
7. [**Echinoderm mtDNA**] Echinoderm mitochondrial DNA code. (Genebank transl_table=9).
8. [**Euplotid Nuclear**] Euplotid Nuclear code. (Genebank transl_table=10).
9. [**Alt. Yeast Nuclear**] Alternative Yeast Nuclear code. (Genebank transl_table=12).
10. [**Ascidian mtDNA**] Ascidian mitochondrial DNA code. (Genebank transl_table=13).
11. [**Flatworm mtDNA**] Flatworm mitochondrial DNA code. (Genebank transl_table=14).
12. [**Blepharisma Nuclear**] Blepharisma Nuclear code. (Genebank transl_table=15).
13. [**Chlorophycean mtDNA**] Chlorophycean Mitochondrial Code (transl_table=16).
14. [**Trematode mtDNA**] Trematode Mitochondrial Code (transl_table=21).
15. [**Scenedesmus obliquus mtDNA**] Scenedesmus obliquus mitochondrial Code (transl_table=22).
16. [**Thraustochytrium mtDNA**] Thraustochytrium Mitochondrial Code (transl_table=23).
17. [**Pterobranchia mtDNA**] Pterobranchia Mitochondrial Code (transl_table=24).
18. [**SR1 and Gracilibacteria**] Candidate Division SR1 and Gracilibacteria Code (transl_table=25).
19. [**Pachysolen Nuclear**] Pachysolen tannophilus Nuclear Code (transl_table=26).
>Please choose an option (or press q to cancel selection):
>Select a coding sequence alignment file (`/usr/local/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/`)
>A tree was found in the data file: `(C52,(C58,C63,C57,C64,C53),((((((((C67,(C12,C68,C48),C44,C89,C47,C50,C86,C49,C46),((C10,(((C70,C32,C33),((C26,C27,C29),C25)),C14)),(((((((((((C17,C20,C78,C23,C19,C13,C24,C16,C21,C18),C22),(C76,(C74,C72)),C75,C77,((C85,C43),((C6,C5),C9,C11,C7,C8)),(C84,C83),C30,C34,(C35,C37),(C82,C81)),((C79,C80),C73)),C71),(C28,C3)),C2),C1),C15),C4),C87)),C92),(C69,C88,C40,C31,C91)),(C39,C45)),C38),(C42,C41)),(C66,C59,C60),C56),C55,C61,C54,(C62,C51),C65))`
>Would you like to use it (y/n)?
>Loaded a multiple sequence alignment with **90** sequences, **251** codons, and **1** partitions from `/data//pss_subsets/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1.fna`
> FUBAR will write cache and result files to _/data//pss_subsets/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1.fna.FUBAR.cache_ and _/data//pss_subsets/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1.fna.FUBAR.json_, respectively
> Number of grid points per dimension (total number is D^2) (permissible range = [5,50], default value = 20, integer):
####Posterior estimation method
1. [**Metropolis-Hastings**] Full Metropolis-Hastings MCMC algorithm (slowest, original 2013 paper implementation)
2. [**Collapsed Gibbs**] Collapsed Gibbs sampler (intermediate speed)
3. [**Variational Bayes**] 0-th order Variational Bayes approximations (fastest, recommended default)
>Please choose an option (or press q to cancel selection):> The concentration parameter of the Dirichlet prior (permissible range = [0.001,1], default value = 0.5):
### Obtaining branch lengths and nucleotide substitution biases under the nucleotide GTR model
* Log(L) = -4619.07, AIC-c = 9524.76 (143 estimated parameters)
* Tree length (expected substitutions/site) for partition 1 : 0.904
### Computing the phylogenetic likelihood function on the grid
* Determining appropriate tree scaling based on the best score from a 20 x 20 rate grid
* Best scaling achieved for
* synonymous rate = 2.815
* non-synonymous rate = 0.571
* Computing conditional site likelihoods on a 20 x 20 rate grid
### Running an iterative zeroth order variational Bayes procedure to estimate the posterior mean of rate weights
* Using the following settings
* Dirichlet alpha : 0.5
### Tabulating site-level results
| Codon | Partition | alpha | beta |Posterior prob for positive selection|
|:--------------:|:--------------:|:--------------:|:--------------:|:-----------------------------------:|
| 20 | 1 | 0.923 | 4.707 | Pos. posterior = 0.9228 |
| 181 | 1 | 0.322 | 1.103 | Pos. posterior = 0.9092 |
| 240 | 1 | 0.310 | 1.109 | Pos. posterior = 0.9156 |
----
## FUBAR inferred 3 sites subject to diversifying positive selection at posterior probability >= 0.9
Of these, 0.25 are expected to be false positives (95% confidence interval of 0-1 )
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.17 sec, SCORE=1000, Nseq=90, Len=251
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDRVIVQQHHVVSARTQNY
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHQVVSARTQNY
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHHVVSARTQNY
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFIITSQHVIVNTTANVHHIQQEHVIVQQQQIVSARTQNY
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHQVVSARTQNY
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSF
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 MIGGLFLNTLSFVIVSNHSIVNNTAHVHHTQQDRVIVQQHQVVSARTQNY
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSF
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSF
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHQVVSARTQNY
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_12 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHHVVSARTQNY
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_10 MIGGLFLNTLSFVIVSNHVIVNNTANVHFTQQEHVIVQQHQVVSARTQNY
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 MIGGLSLNTLSFVIVSNHSIVNNTANVHHIKQERVIVQQHQVVSARTQNY
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 MIGGLFLNTLSFVIVSNHVIVNNTANVHTTQQEHVIVQQHQVVSARTQNY
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHHVVSARTQNY
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_17 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_14 MIGGLFLNTLSFVIVSNHVVVNNTENVQHIQQENVIVQQHHVVSARTQNY
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSANIKSF
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 MIGGLFLNTLGFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 MIGGLFLNTLSFIVTNQHVTVNNTPHVNS------IVQQHHVVSASIKRF
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSANIKSF
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 --------------------------------------------------
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 MIGGLFLNTLSFIVTNQHVVVNNTPHLQT------VVQQHHVVSANIKSS
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_10 MIGGLFLNTLSFIVTNQHVIVNNTSHVNS------IVQQHHVVSASIKSF
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 MIGGLFLNTLSFIITSQHVIVNNTANVHHIQQEHVIVQQQQIVSARTQNY
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 --------------------------------------------------
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 MIGGLFLNTLSFVIVSNHSIVNNTANVHHIKQERVIVQQHQVVSARTQNY
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_14 MIGGLFLNTLSFIVTTQHVSVNNTPHVNS------IVQQHHVVSANIKSF
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_12 --------------------------------------------------
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_15 MIGGLFLNTLSFIVTNQHVIVNNTSHVNS------IVQQHHVVSANIKSF
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_18 MIGGLFLNTLSFVIVSNHSIVNNTANVHH---------------------
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_19 MIGGLFLNTLSFLIVSNHSIVNNTANVHHTQHERIIVQQHHVVSARTQNY
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 MIGGLFLNTLSFVIVSNHSIVNNTANVHHIKLERVIVQQHQVVSARTQNY
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_11 MIGGLFLNTLSFVIVSNHSIVNNTANVHHIKQERVIVQQHQVVSARTQNY
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_19 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_13 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHHVVSARTQNY
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHVIVNNTANVHSTQQEHVIVQQHQFVNARTQNY
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 MIGGLFLNTLSFIVTNQHVVANNTPHFHG------LVQQHQVVSANIKSS
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDRVIVQQHQVVSARTQNY
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDRVIVQQHQVVSARTQNY
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_16 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDRVIVQQHQVVSARTQNY
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 MIGGLFLNTLSFLIVSNHSIVNNTANVHHTQHERIIVQQHHVVSARTQNY
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 MIGGLFLNTLGFIVTNQHVIVNNTPHVNS------ILQQHHVVSANIKSF
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQNRVIVQQHQVVSARTQNY
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 MIGGLFLNTLSFIVNNQHVVVNNTPHVNS------IVQQHHVVSANIKSF
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_17 MIGGLFLNTLSFIVTNQHVIVNNTSHVNS------IVQQHHVVSANIKSF
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_15 MIGGLFLNTLSFVIVSNHVIVNNTANVHSIQQEHVIVQQHQVVSARTQNY
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHHVVSARTQNY
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHVFVNNTANVHHIQQDHVLVQQHQVVSARTQNY
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_11 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQNRVIVQQHQVVSARTQNY
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 --------------------------------------------------
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_11 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 MIGGLFLNTLSFIVTNQHVTVNNTPHVNS------IVQQHHVVSASIKSF
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSF
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 --------------------------------------------------
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 MIGGLFLNTLSFIVTNQHVVVNNTSHVNS------IVQQHHVVSASIKSF
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_18 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_11 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSF
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 MIGGLFLNTLSFIVNNQHVIVNNTPHVNS------IVQQHHVVSANIKSF
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHHVVSARTQNY
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 MIGGLFLNTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_13 MIGGLFLNTLSFVIVSNHVIVNNTANVHTTQQEHVIVQQHQVVSARTQNY
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 MIGGLFLNTLSFVIVSNHSIANNTANVHHTQQDRVIVQQHQVVSARTQNY
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSF
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 MIGGLFLNTLSFIITSQHVIVNNTANVHHIQQEHVIVQQQQIVSARTQNY
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 MIGGLFLNTLSFVIVSNHSIVTNTANVHHTQQDHVIVQQHHVVSARTQNY
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 MIGGLFLNTLSFVIVSNHSIVNNTANVHHIKQERVIVQQHQVVSARTQNY
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 MIGGLFLNTLGFIVTNQHVIVNNTPHVNS------ILQQHHVVSANIKSF
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 MIGGLFLNTLSFVIVSNHSIVNNTAHVHHTQQDRVIVQQHQVVSARTQNY
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDRVIVQQHQVVSARTQNY
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHHVVSARTQNY
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 --------------------------------------------------
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_1 YPEFSIAVLFVLFLALYRSTNFKACVGILMFKIVAMTLIGPMLIAFGYYI
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 HLEFSIAVLFVLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYI
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 HLEFSIAVLFVLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYI
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 HLEFSIAVLFVLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYI
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_12 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_10 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKIVSMTLIGPMLIAYGYYI
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKIVSMTLIGPMLIAYGYYI
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_17 HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_14 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKIVSMTLIGPMLIAYGYYI
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 HLEFSIAVLFVLFLALYRSTNFKMCVGVLMFKIVSMTLIGPMLIAFGYYI
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIVSMTLIGPMLIAFGYYI
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYV
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 -----------------------------MFKIVSMTLVGPMLIAYGYYI
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 HLEFSIAVLFILFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_10 HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 YPEFSIAVLFVLFLALYRSTNFKACVGILMFKIVAMTLIGPMLIAFGYYI
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 -----------------------------MFKIVSMTLIGPMLIAYGYYI
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_14 HLEFSIAVLFVLFLALYRSTNFKMCVGVLMFKIVSMTLIGPMLIAFGYYI
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_12 -----------------------------MFKIVSMTLIGPMLIAYGYYI
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_15 HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_18 ------------------TQQVKTCVGILMFKILSMTLLGPMLIVYGYYI
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_19 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_11 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_19 HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_13 HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 YPEFSIAVLFVLFLALYRSTNFKTCVGILMFKIVSMTLIGPMLIAYGYYI
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 HLEFSIAALFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_16 HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 YPEFSIAVLFISFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 HLEFSIAVPFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_17 HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_15 YPEFSIAVLFVLFLALYRSTNFKTCVGILMFKIVSMTLIGPMLIAYGYYI
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_1 YPEFSIAVLFVLFLALYRSTNFKTCVGILMFKIVSMTLIGPMLIAYGYYI
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_11 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 -----------------------------MFKIVSMTLVGPMLIAYGYYI
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_11 HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 HLEFSIAVLFVLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYI
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 -----------------------------MFKIVSMTLVGPMLIAYGYYI
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYV
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_18 HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_11 HLEFSIAVLFVLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYI
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_13 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKIVSMTLIGPMLIAYGYYI
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 HLEFSIAVLFVLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYI
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 YPEFSIAVLFVLFLALYRSTNFKTCVGILMFKIVSMTLIGPMLIAYGYYI
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 -----------------------------MFKIVSMTLVGPMLIAYGYYI
****::***:*****.:*:*:
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 DGIVTTTFLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVQGRAAPFKRSS
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_1 DGIVTTTVLALRFIYLSYFWYANSRFEFVLFNTTTLMFVHGRAAPFMRSS
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 DGIVTTTFLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 DGIVTTTVLALRFIYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSS
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 DGIVTTTVLALRFIYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSS
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 DGIVTTTVLALRFIYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSS
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 DGIVTTTFLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_12 DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_10 DGIVTTTVLSLRFLYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 DGIVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 DGIVTTIVLALRFCYLAYFWYVNSSFEFILYNTTTLMFVHGRAAPFMRSS
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_17 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_14 DGIVTTTVLALRFFYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 DGIVTTTVLALRFIYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 DGIVTTTVLALRFIYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 DGIVTITVLALRFLYLAYFWYVNSRSEFILYNTTTLMFVHGRAAPFMRSS
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 DGIVTTTVLALRFIYLAYFWYVNSRFEFLLYNTTTLMFVHDRAAPFMRSS
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 DGIVTTTVLALRFIYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFVRSS
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_10 DGIVTTTVLALRFVYLAYFWYVNSRFELILYNTTTLMFVHDRAAPFMRSS
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 DGIVTTTVLALRFIYLAYFWYANSRFEFILFNTTTLMFVHGRAAPFMRSS
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 DGIVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRATPFKRSS
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_14 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_12 DGIVTTIVLALRFCYLAYFWYVNSSFEFILYNTTTLMFVHGRAAPFMRSS
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_15 DGIVTTTVLALRFIYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_18 DGIVTTTFLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_19 DGVVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 DGIVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_11 DGIVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_19 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_13 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPLMRSS
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 DGIVTTTVLALRFVYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSS
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_16 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 DGVVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 DGIVTTTVLALRFIYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 DGIVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_17 DGIVTTTVLALRFIYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_15 DGIVTTTVLALRFVYLSYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_1 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_11 DGIVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLIFVHGRAAPFKRSS
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 DGIVTITVLALRFFYLAYFWYVNSRSEFILYNTTTLMFVHGRAAPFMRSS
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_11 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 DGIVTTTVLALRFIYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSS
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 DGIGTITVLALRFFYLAYFWIVNSRSEFILYHTTTLMFVHGRAAPFMRSS
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 DGIVITTVLALRFIYLAYFWCVNSRFEFILYNTTTLMFVLDRAAPFVRSS
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_18 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_11 DGIVTTTVLALRFIYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSS
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_13 DGIVTTIVLALRFCYLAYFWYVNSSFEFILYNTTTLMFVHGRAAPFMRSS
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 DGIVTTTVLALRFIYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSS
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 DGIVTTTVLALRFVYLSYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 DGIVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 DGIVTTTVLALRFIYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 DGIVTTTVLALRFFYLAYFWYVNSRFEFILYNITTLMFVHGRAAPFMRSS
**: .*:**: **:*** .** *::*:: ***:** .**:*: ***
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_1 HSSIYVTLYGGINYMLVNDLTLHFVDPMLVRIAIRGLAHADLTVVRAVEL
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_12 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_10 HRSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 HSSIYVTLYGGINYMFVDDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_17 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_14 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAVRGLVRADLTVVRAVEL
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVCIAIRGLVRADLTVVRAVEL
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAVRGLVRADLTVVRAVEL
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVRIAIRGLAHADLTVFRAVEL
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 HGSIYVTLHGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_10 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 HSSIYVTLYGGINYMLVNDLTLHFVDPMLVRIAIRGLAHADLTVVRAVEL
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_14 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_12 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_15 HGSIYVTLYGGINYMLVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_18 HSSIYVTLYGGINYMFVNDFMLHFVDPMLVSIAIRGLTHADLTVVRAVEL
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_19 HNSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_11 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_19 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_13 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTIVRAVEL
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAVRGLVRADLTVVRAVEL
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_16 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 HNSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 HSSIYVTLYGGINYMLVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_17 HGSIYVTLYGGINYMLVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_15 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_1 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_11 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVRIAIRGLAHADLTVFRAVEL
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_11 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVRIAIRGLAHADLTVFRAVEL
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 HGSIYVTLHGGIIYMFVNDLTLHFVDSMLVGIAIRGLVHADL-VVRAVEL
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_18 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_11 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_13 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 HGSIYVTLYGGINYMFVNDLMLHFVDPMLVGIAIRGLVRADLTVFRAVEL
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 HSSIYVILYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL
* **** *:*** **:*:*: *****.*** **:*** :*** :.*****
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_1 LNGDFIYIFSQEAVVGVYNAAFSQAVLNEIDLKEEEEEHIYDVPEGINCH
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 LNGDFIYIFSQEAVV-------MQPFLRRL--------------------
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDIS------
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 LNGDFIYIFSQEAVV-------MQPFLRRL--------------------
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_12 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_10 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVP------
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDRAYDVS------
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHNYDVPQGIDCH
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_17 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_14 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVP------
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-CVYDVS------
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 LNGDFIYVFSQEPVAGVYNAASSQAVLNEIDLKEEEEDHNYDVP------
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-SVYDVS------
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 LNGDFIYIFSQEPVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_10 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 LNGDFIYIFSQEAVVGVYNAAFSQAVLNEIDLKEEEEEHIYDVPEGINCH
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEID-------------------
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDRTYDVS------
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_14 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_12 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHNYDVPQGIDCH
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_15 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_18 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEEGDRTYDVS------
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_19 LNGDFIYVFSQEPVVGVYNAAFSQVVLNEIDLKEEEGDHTYDVS------
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDRTYDVS------
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_11 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDRTYDVS------
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_19 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_13 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVP------
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 LNGDFIYVFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_16 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 LNGDFIYVFSQEPVVGVYNAAFSQVVLNEIDLKEEEGDHTYDVS------
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEENSDRTYDIS------
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_17 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_15 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVP------
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_1 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVP------
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_11 LNGGFIYIFSQEPVVGVYNASFSQVELNEIDLKEEKVDRTYDVSQGIDCH
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 LNGDFIYVFSQEPVAGVYNAASSQAVLNEIDLKEEEEDHNYDVP------
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_11 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 LNGDFIYVFSQEPVAGVYNAASSQAVLNEIDLKEEEEDHNYDVP------
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 LNGDFIYIFSQEPVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_18 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_11 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_13 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHNYDVPQGIDCH
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVP------
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDRTYDVS------
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDIS------
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 LNGDFIYVFSQEPVAGVYNAASSQAVLNEIDLKEEEEDHNYDVL------
***.***:****.*. * :..:
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 -
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 -
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 -
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_1 R
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 -
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 -
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 -
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 -
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 -
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 -
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 -
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_12 -
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_10 -
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 -
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 R
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 -
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_17 -
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_14 -
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 -
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 -
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 -
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 -
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 -
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 -
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 -
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 -
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 -
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 -
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 -
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_10 -
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 R
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 -
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 -
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_14 -
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_12 R
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_15 -
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_18 -
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_19 -
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 -
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_11 -
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_19 -
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_13 -
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 -
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 -
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 -
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 -
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 -
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 -
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 -
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 -
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_16 -
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 -
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 -
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 -
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 -
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 -
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 -
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 -
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_17 -
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 -
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_15 -
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 -
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 -
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 -
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_1 -
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_11 R
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 -
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_11 -
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 -
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 -
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 -
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 -
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 -
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 -
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_18 -
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_11 -
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 -
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 -
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 -
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_13 R
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 -
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 -
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 -
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 -
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 -
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 -
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 -
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 -
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 -
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 -
>TGEV_USA_Illinois146_2008_NSP3b_ASV64369_1_2008_04_09_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTCAATAACACAGCAAATGTGCATCATACACAACAAGACCGTGTTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCC--------------------- >TGEV_USA_Minnesota152_2014_NSP3b_ASV64422_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATACACAACAAGACCATGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTTTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAACACAACGACACTCATGTTTGTACAGGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTACATGTTTGTGAACGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCT--------------------- >TGEV_USA_Minnesota148_2013_NSP3b_ASV64386_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTCAATAACACAGCAAATGTGCATCATACACAACAAGACCATGTTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTCGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCC--------------------- >23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAACACTCTAAGTTTTATAATTACTAGTCAGCATGTTATTGTTAACACTACAGCAAATGTGCATCACATACAACAAGAACATGTTATAGTACAACAACAACAAATTGTTAGTGCTAGAACACAAAATTATTATCCAGAGTTCAGCATTGCTGTACTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAGGCTTGTGTCGGTATCTTAATGTTTAAGATAGTAGCAATGACACTTATAGGACCTATGCTGATCGCATTTGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTAGCTTTAAGATTCATCTACTTATCATACTTTTGGTATGCTAATAGTAGATTTGAATTTGTTTTATTTAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGCTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTACGCATAGCAATACGCGGCTTAGCTCATGCTGATCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGAGCATATCTATGACGTTCCCGAGGGCATTAACTGTCATAGA >TGEV_USA_Minnesota153_2014_NSP3b_ASV64431_1_2014_02_04_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATACACAACAAGACCATGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTTTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTACATGTTTGTGAACGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCT--------------------- >27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTACTCAACATGTGGTTGTTAATAACACACCACATTTTAATACT------------------GTAGTGCAACAACATCATGTTGTTAGTGCTAATGTTAAAAGTTTTCATCTAGAGTTCAGCATAGCTGTTCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGCGTGTGTCGGTATCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTCACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCATTTACTTAGCATACTTTTGGTATGTTAATAGTAAATTTGAATTTATTTTATATAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTGTATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTCGTA---------------------ATGCAGCCTTTTCTCAGGCGGTTA--------------------------------------------------------------- >TGEV_USA_NorthCarolina140_2007_NSP3b_ASV64315_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTCAATAACACAGCACATGTGCATCATACACAACAAGACCGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCTTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACATTTCC--------------------- >26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTACTCAACATGTGGTTGTTAATAACACACCACATTTTAATACT------------------GTAGTGCAACAACATCATGTTGTTAGTGCTAATGTTAAAAGTTTTCATCTAGAGTTCAGCATAGCTGTTCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGCGTGTGTCGGTATCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTCACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCATTTACTTAGCATACTTTTGGTATGTTAATAGTAAATTTGAATTTATTTTATATAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTGTATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTCGTA---------------------ATGCAGCCTTTTCTCAGGCGGTTA--------------------------------------------------------------- >65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTACTCAACATGTGGTTGTTAATAACACACCACATTTTAATACT------------------GTAGTGCAACAACATCATGTTGTTAGTGCTAATGTTAAAAGTTTTCATCTAGAGTTCAGCATAGCTGTTCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGCGTGTGTCGGTATCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTCACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCATTTACTTAGCATACTTTTGGTATGTTAATAGTAAATTTGAATTTATTTTATATAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTGTATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAA---CGTGTCTATGATGTTTCC--------------------- >TGEV_USA_Z_1986_NSP3b_ASV64279_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >TGEV_USA_Wisconsin151_2014_NSP3b_ASV64413_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATACACAACAAGACCATGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTTTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTACATGTTTGTGAACGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCT--------------------- >AYU_NA_AEM55568_1_2009_China_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1 ATGATTGGTGGGCTTTTTCTTAACACTCTGAGTTTTGTAATTGTTAGCAACCATGTTATTGTTAATAATACAGCAAATGTGCATTTTACACAACAAGAACATGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGTATCGCTGTACTCTTTGTATCCTTTCTGGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTGTATCAATGACACTTATAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTCTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGATCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGATCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCGGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTCCC--------------------- >TS_nsp3b_ABC72416_1_NA_NA_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTCTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATAAAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGGATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCGTGCCTATGACGTTTCC--------------------- >TN_449_NA_AFG19741_1_NA_NA_Dog_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAACACTCTTAGTTTTGTAATTGTTAGTAACCATGTTATTGTCAATAACACAGCAAATGTGCATACTACACAACAAGAACATGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAACTATTATCCAGAGTTCAGCATCGCTGTACTCTTTGTATCATTTTTGGCTTTGTACCGTAGTACAAACTTTAAGACTTGTGTCGGCATCTTAATGTTTAAGATTGTATCAATGACACTTATAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAATTGTCTTAGCTTTAAGATTTTGCTACTTAGCATACTTTTGGTATGTTAATAGTAGTTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATATATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATAACTATGACGTTCCCCAGGGCATTGACTGTCATAGA >TH_98_NA_AML22778_1_1998_02_10_China_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >Cat1_day7_NA_AMD11145_1_2013_Belgium_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGTCTGTGTCAGTGTCTTAATGTTTAAGATAATATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTGGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAGCTTCTCAATGGTGATTTTATATATATATTTTCACAGGAAGCCGTGGTCGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >CCoV_NTU336_F_2008_ORF3c_ADB28910_1_2008_11_Taiwan_Dog_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTTAGTTTTGTAATTGTTAGTAACCATGTTGTTGTTAATAACACAGAAAATGTGCAGCACATACAACAAGAAAATGTTATAGTACAACAACATCATGTTGTTAGTGCTCGAACGCAAAACTATTACCCAGAGTTCAGCATTGCTGTACTCTTTGTATCCTTTTTGGCTTTGTACCGTAGTACAAATTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTGTATCAATGACACTTATAGGACCTATGCTCATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTAGCTTTAAGATTTTTCTACTTAGCATACTTTTGGTATGTTAACAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTCCC--------------------- >UU18_NA_ADL71458_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACACTAAGTTTTATAGTCACTAATCAACATGTGATTGTTAATAACACTCCACATGTCAATTCT------------------ATAGTACAACAACATCACGTTGTTAGTGCTAATATTAAAAGTTTTCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTCCTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCGTTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTTATTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTTATTTTATACAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTGTACGCGGCCTAGTTCGCGCTGACCTAACGGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTGAAAGAAGAAGAAGAA---CGTGTCTATGATGTTTCC--------------------- >UU19_NA_ADO39831_1_2007_08_23_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAGGTTTTATAGTTACTAATCAACATGTGATTGTTAATAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATCTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAAATGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGCTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCATTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTTATTTTGTATAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTACATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTATGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTGAAAGAAGAAGAAGAA---CGTGTCTATGATGTTTCC--------------------- >Cat2_day84_NA_AMD11211_1_2013_Belgium_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGTCTGTGTCAGTGTCTTAATGTTTAAGATAATATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTGGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAGCTTCTCAATGGTGATTTTATATATATATTTTCACAGGAAGCCGTGGTCGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >Cat_1_Karlslunde_NA_ASU62502_1_2015_02_01_Denmark_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACCCTAAGTTTTATAGTTACTAATCAACATGTGACTGTTAATAACACACCACATGTTAATTCC------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAACGTTTCCACTTAGAGTTCAGCATTGCTGTTCTCTTTGTTCTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCAGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTTATCTTGTATAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGACTTTATTTATATATTTTCACAGGAGGCCGTAGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >UU2_NA_ACT10951_1_1993_03_30_USA_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGTCTGTGTCAGTGTCTTAATGTTTAAGATAATATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTGGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAGCTTCTCAATGGTGATTTTATATATATATTTTCACAGGAAGCCGTGGTCGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >UU22_NA_ADC35464_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATCAAAAGTTTTCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTCCTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTTACTACGTAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTTGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTCTATACAATACAACGACACTTATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGTTCTATTTATGTCACATTATATGGCGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAACGGTGATTTTATTTATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAA---CGTGTCTATGATGTTTCC--------------------- >UU20_NA_ADO39842_1_2007_08_23_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAATAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAACATTAAAAGTTTTCATTTAGAGTTCAGCATTGCTGTTCTCTTTGTTTTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTTGTTTACTTGGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTGTCCGCGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATATATATATTTTCACAGGAGGCCGTCGTTGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---TGTGTCTATGATGTTTCC--------------------- >FCoVWSU791146_P50_ORF3c_AGZ84539_1_2011_USA_Cat_Alphacoronavirus_1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTAAGATTGTATCAATGACACTTGTAGGGCCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAATAACTGTCTTAGCTTTAAGATTTCTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTCCGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGAATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTTTTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATATATGTATTTTCACAGGAGCCCGTAGCCGGTGTTTACAATGCAGCCTCTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATAACTATGACGTTCCC--------------------- >Cat3_day9_NA_AMD11178_1_2013_Belgium_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGTCTGTGTCAGTGTCTTAATGTTTAAGATAATATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTGGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAGCTTCTCAATGGTGATTTTATATATATATTTTCACAGGAAGCCGTGGTCGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >UU54_NA_AEK25524_1_2010_03_12_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGATTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGGTTGTTAACAACACACCACATCTTCAGACT------------------GTAGTGCAACAACATCACGTTGTTAGTGCTAATATTAAAAGTTCTCATTTAGAGTTCAGCATTGCTGTGCTCTTTATTTTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTAATAGCATTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCATTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCCTCTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTGAAAGAAGAAGAAGAA---AGTGTCTATGATGTTTCC--------------------- >UU7_NA_ACT10879_1_2007_04_25_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGATTGTTCCTCAACACTCTAAGTTTTATAGTTACCAACCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTTCATTTAGAGTTCAGCATAGCTGTTCTCTTTGTTTTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTTATCTACTTAGCATATTTTTGGTATGTTAATAGTAGATTTGAATTCATTCTATATAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTGTGAGAAGTTCTCACGGCTCTATTTATGTCACATTACATGGAGGCATAAATTACATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTTGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >Felis_catus_NLD_UU88_2010_NS3c_AGT52083_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGATTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAATAACACATCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATCTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTGTTTTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTCTCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTTGTTTACTTAGCATACTTCTGGTATGTTAATAGTAGGTTTGAACTCATTCTATATAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTGTATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >DF_2_R3i_ORF3c_AFH55114_1_NA_NA_Cat_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAACACTCTAAGTTTTATAATTACTAGTCAACATGTTATTGTTAACAATACAGCAAATGTGCATCATATACAACAAGAACATGTTATAGTACAACAACAACAAATTGTTAGTGCTAGAACACAAAATTATTATCCAGAGTTCAGCATTGCTGTACTCTTTGTTTTATTTTTAGCTTTATACCGTAGTACAAACTTTAAGGCTTGTGTCGGTATCTTAATGTTTAAGATAGTAGCAATGACACTTATAGGACCTATGCTGATCGCATTTGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTAGCTTTAAGATTTATTTACTTAGCATACTTTTGGTATGCTAATAGTAGATTTGAATTCATTTTATTCAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGCTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTACGCATAGCAATACGCGGCTTAGCTCATGCTGATCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGAGCATATCTATGACGTTCCCGAGGGCATTAACTGTCATAGA >WSU_79_1683_NA_AFH58018_1_NA_NA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTAAGATTGTATCAATGACACTTATAGGACCTATGCTTATAGCATATGGTTACTATATTGATGGCATTGTTACAACAACTGTCTTAGCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGAAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTTGTTAGAGCAGTCGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGAC------------------------------------------------------------ >attenuated_H_NA_ABU49661_1_NA_China_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATAAAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTACACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCGTACCTATGACGTTTCC--------------------- >HLJ_DQ_2016_01_NA_ASB16890_1_2016_10_China_Cat_Alphacoronavirus_1 ATGATTGGTGGCTTGTTTCTTAACACTCTAAGTTTTATAGTCACTACTCAACATGTGAGTGTTAATAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAATATTAAAAGTTTTCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTCTTAGCTTTGTACCGTAGTACAAACTTTAAAATGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAGTTCATTTTATACAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCGCAGGAGGCCGTAGTTGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAA---CGCGTCTATGATGTTTCC--------------------- >HLJ_072_NA_ASB15751_1_2016_07_01_China_Dog_Alphacoronavirus_1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTAAGATTGTATCAATGACACTTATAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAATTGTCTTAGCTTTAAGATTTTGCTACTTAGCATACTTTTGGTATGTTAATAGTAGTTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATATATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATAACTATGACGTTCCCCAGGGCATTGACTGTCATAGA >HLJ_HRB_2016_10_NA_AUG98122_1_2016_11_China_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTCACTAATCAACATGTGATTGTTAATAACACATCACATGTCAATTCC------------------ATAGTACAACAGCATCATGTTGTTAGTGCTAATATTAAAAGTTTTCATCTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTGGCTTTAAGATTTATTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACACTATATGGAGGCATAAATTATATGCTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGATCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTCGTGGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >ISU_1_NA_ABG89311_1_NA_USA_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCAT---------------------------------------------------------------------------------------------------------------------ACACAACAAGTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTTTCTTATCTTTAAGATTCGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACTTCATGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAACTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAGGGAGACCGTACCTATGACGTTTCC--------------------- >Italy_213306_2009_NA_YP_009199244_1_2009_09_04_Italy_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTCTTAATTGTTAGTAACCACTCTATTGTTAATAATACAGCAAATGTGCATCACACACAGCACGAACGTATTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACCTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACGCTTTTAGGACCTATGCTTATAGCATATGGTTACTATATTGATGGCGTTGTTACAACAACTGTCTTATCTTTAAGATTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAACTCTATTTATGTCACATTGTATGGTGGCATAAATTACATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTACGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGTCGTTCTAAACGAAATTGACTTAAAAGAAGAAGAGGGTGACCACACCTATGACGTTTCC--------------------- >JS2012_ORF3b_AMB66490_1_2012_China_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATAAAACTAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCGTACCTATGACGTTTCC--------------------- >H16_NA_ACN71198_1_1973_China_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATAAAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCGTACCTATGACGTTTCC--------------------- >Cat2_day21_deletion_NA_AMD11156_1_2013_Belgium_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGTCTGTGTCAGTGTCTTAATGTTTAAGATAATATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTGGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAGCTTCTCAATGGTGATTTTATATATATATTTTCACAGGAAGCCGTGGTCGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >Cat1_day28_withoutdeletion_NA_AMD11200_1_2013_Belgium_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGTCTGTGTCAGTGTCTTAATGTTTAAGATAATATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTGGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAGCTTCTCAATGGTGATTTTATATATATATTTTCACAGGAAGCCGTGGTCGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >TGEV_HX_NA_AGM75128_1_2012_05_05_China_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 ATGATTGGCGGACTTTTCCTTAACACTCTGAGTTTTGTAATTGTTAGCAACCATGTCATTGTTAATAATACAGCAAATGTGCATTCTACACAACAAGAACATGTTATAGTACAACAGCATCAGTTTGTTAATGCTAGAACACAAAACTATTATCCAGAGTTCAGCATTGCTGTACTCTTTGTTTTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTCAAGATTGTATCAATGACACTTATAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTAGCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGCTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTGGCTCATGCTGATCTAACTATTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGATTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTCCC--------------------- >RM_NA_ACT10857_1_2002_01_28_USA_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACGAATCAACATGTGGTTGCTAACAACACACCACATTTTCACGGC------------------TTAGTGCAACAACATCAGGTTGTTAGTGCTAACATTAAAAGTTCTCATTTAGAGTTCAGCATTGCTGCGCTCTTTGTTTTATTCTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAAATTCGAGTTTATTTTATATAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTGTATGGAGGCATAAATTACATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTGGGCATAGCTGTACGCGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATATATGTATTTTCACAGGAGGCCGTAGTCGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTGAAAGAAGAAGAAGAA---CGTGTCTATGATGTTTCC--------------------- >Cat3_day28_deletion_NA_AMD11222_1_2013_Belgium_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGTCTGTGTCAGTGTCTTAATGTTTAAGATAATATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTGGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAGCTTCTCAATGGTGATTTTATATATATATTTTCACAGGAAGCCGTGGTCGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >SC_Y_nsp3b_ABD97837_1_NA_China_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >attenuated_Purdue_P115_NA_ABG89326_1_NA_NA_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >TGEV_USA_Minnesota138_2006_NSP3b_ASV64297_1_2006_11_08_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTCAATAACACAGCAAATGTGCATCATACACAACAAGACCGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCTTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCC--------------------- >TGEV_USA_NorthCarolina142_2007_NSP3b_ASV64333_1_2007_02_16_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTCAATAACACAGCAAATGTGCATCATACACAACAAGACCGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCC--------------------- >Cat1_day28_deletion_NA_AMD11189_1_2013_Belgium_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGTCTGTGTCAGTGTCTTAATGTTTAAGATAATATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTGGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAGCTTCTCAATGGTGATTTTATATATATATTTTCACAGGAAGCCGTGGTCGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >TGEV_USA_Iowa143_2008_NSP3b_ASV64342_1_2008_03_06_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAATCATTCTATTGTCAATAACACAGCAAATGTGCATCATACACAACAAGACCGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCC--------------------- >TGEV_AHHF_NA_AQT01351_1_2015_12_22_China_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >SeCoV_1480_Murcia_Lorca_gp5_QKV43715_1_2014_05_30_Spain_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTCTTAATTGTTAGTAACCACTCTATTGTTAATAATACAGCAAATGTGCATCACACACAGCACGAACGTATTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACGCTTTTAGGACCTATGCTTATAGCATATGGTTACTATATTGATGGCGTTGTTACAACAACTGTCTTATCTTTAAGATTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAACTCTATTTATGTCACATTGTATGGTGGCATAAATTACATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTACGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGTCGTTCTAAACGAAATTGACTTAAAAGAAGAAGAGGGTGACCACACCTATGACGTTTCC--------------------- >UU11_NA_ACT10868_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACACTAGGTTTTATAGTTACTAATCAACATGTGATTGTCAATAACACTCCACATGTTAATTCT------------------ATATTACAACAACATCATGTTGTTAGTGCTAATATTAAAAGTTTTCATTTAGAGTTCAGCATTGCTGTTCTCTTTGTTTTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCATCTACTTAGCATACTTCTGGTATGTTAATAGTAGATTCGAATTTATCTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGATCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGGCCGTAGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >PRCV_USA_Minnesota_46140_2016_ORF3b_ASV45150_1_2016_11_01_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTACATCATACACAACAAAACCGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTATATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGCTTACTTAGCATACTTTTGGTATGTTAACAGTAGGTTTGAATTTATTTTATACAACACAACGACACTTATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGCTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAATAGTGACCGTACCTATGACATTTCC--------------------- >UU40_NA_ADO39820_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTAATAATCAACATGTGGTTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAATATTAAAAGTTTTCATTTAGAGTTCAGCATTGCTGTGCCCTTTGTTTTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCGTTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTTGTTTACTTGGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATCTTATATAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGGGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGATCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGGCCGTAGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >TGEV_Mex_145_2008_NSP3b_ASV64360_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >HLJ_HRB_2016_13_NA_AUG98144_1_2016_11_China_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTCACTAATCAACATGTGATTGTTAATAACACATCACATGTCAATTCC------------------ATAGTACAACAGCATCATGTTGTTAGTGCTAATATTAAAAGTTTTCATCTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTGGCTTTAAGATTTATTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACACTATATGGAGGCATAAATTATATGCTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGATCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTCGTGGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >UNKNOWN_HQ012372_NA_ADL71500_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATCAAAAGTTTTCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTCCTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTTGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTCTATACAATACAACGACACTTATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGTTCTATTTATGTCACATTATATGGCGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAACGGTGATTTTATTTATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAA---CGTGTCTATGATGTTTCC--------------------- >CB_05_ORF3c_AKA65832_1_2005_Italy_Dog_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAACACTCTGAGTTTTGTAATTGTTAGCAACCATGTCATTGTTAATAATACAGCAAATGTGCATTCTATACAACAAGAACATGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTACTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTGTATCAATGACACTTATAGGGCCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTAGCTTTAAGATTTGTCTACTTATCATACTTTTGGTATGTTAATAGTAGGTTTGAATTCATCTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTACGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTCCC--------------------- >WH_1_nsp3b_ADY39742_1_NA_China_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >TGEV_USA_HB_1988_NSP3b_ASV64288_1_1988_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >TGEV_USA_Oklahoma147_2012_NSP3b_ASV64377_1_2012_11_29_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTCAATAACACAGCAAATGTGCATCATACACAACAAGACCATGTTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTCGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCC--------------------- >1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAACACTCTTAGTTTTGTAATTGTTAGTAACCATGTGTTTGTTAACAACACAGCAAATGTGCATCATATACAACAAGACCATGTTTTAGTACAACAACATCAGGTTGTTAGTGCTAGAACACAAAATTACTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTGTATCAATGACACTTATAGGACCTATGCTCATAGCATATGGTTACTACATTGACGGCATTGTTACAACAACTGTCTTAGCTTTAAGATTTGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTCATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTACGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCACACCTATGACGTTCCC--------------------- >OH7269_ORF3b_AKV62757_1_2014_07_24_USA_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATACACAACAAAACCGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTACTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGCCTACTTAGCATACTTTTGGTATGTTAACAGTAGGTTTGAATTTATTTTATACAACACAACGACACTCATTTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTGAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGGTTTCATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCATCCTTTTCTCAGGTAGAACTAAACGAAATTGACTTAAAAGAAGAAAAGGTAGACCGTACCTATGACGTTTCCCAGGGCATTGACTGTCATAGA >FCoVWSU791146_P1_ORF3c_AGZ84519_1_2011_USA_Cat_Alphacoronavirus_1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTAAGATTGTATCAATGACACTTGTAGGGCCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAATAACTGTCTTAGCTTTAAGATTTTTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTCCGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGAATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTTTTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATATATGTATTTTCACAGGAGCCCGTAGCCGGTGTTTACAATGCAGCCTCTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATAACTATGACGTTCCC--------------------- >Cat3_day28_withoutdeletion_NA_AMD11233_1_2013_Belgium_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGTCTGTGTCAGTGTCTTAATGTTTAAGATAATATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTGGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAGCTTCTCAATGGTGATTTTATATATATATTTTCACAGGAAGCCGTGGTCGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >UG_FH8_NA_ASU62491_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAACCAACATGTGACTGTAAACAACACACCACATGTTAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATCAAAAGTTTTCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTTGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATACGGAGGCATAAATTATATGTTCGTGAATGATCTCACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGCGGCTTAGTTCGTGCTGACTTAACAGTAGTTAGGGCAGTTGAACTTCTCAATGGTGACTTTATATATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTGAAAGAAGAAGAAGAA---CGTGTCTATGATGTTTCC--------------------- >SHXB_NA_AKA60056_1_2013_03_07_China_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTACTCAACATGTGGTTGTTAATAACACACCACATTTTAATACT------------------GTAGTGCAACAACATCATGTTGTTAGTGCTAATGTTAAAAGTTTTCATCTAGAGTTCAGCATAGCTGTTCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGCGTGTGTCGGTATCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTCACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCATTTACTTAGCATACTTTTGGTATGTTAATAGTAAATTTGAATTTATTTTATATAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTGTATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAA---CGTGTCTATGATGTTTCC--------------------- >FCoVWSU791146_P8_ORF3c_AGZ84529_1_2011_USA_Cat_Alphacoronavirus_1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTAAGATTGTATCAATGACACTTGTAGGGCCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGGTACGATAACTGTCTTAGCTTTAAGATTTTTCTACTTAGCATACTTTTGGATTGTTAATAGTAGGTCCGAATTTATTTTATACCATACAACGACACTCATGTTTGTACATGGCAGAGCTGCCCCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTGGTAAGAATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTTTTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATATATGTATTTTCACAGGAGCCCGTAGCCGGTGTTTACAATGCAGCCTCTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATAACTATGACGTTCCC--------------------- >UU23_NA_ADC35475_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATCAAAAGTTTTCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTCCTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTTACTACGTAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTTGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTCTATACAATACAACGACACTTATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGTTCTATTTATGTCACATTATATGGCGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAACGGTGATTTTATTTATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAA---CGTGTCTATGATGTTTCC--------------------- >UU4_NA_ACT10888_1_2007_02_02_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGATTGTTCCTCAACACTCTAAGTTTTATAGTTACCAACCAACATGTGGTTGTTAATAACACATCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTTCATTTAGAGTTCAGCATAGCTGTTCTCTTTGTTTTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTTACTACATAGATGGCATTGTGATAACAACTGTCTTAGCTTTAAGATTTATCTACTTAGCATATTTTTGGTGTGTTAATAGTAGATTTGAATTCATTCTATATAATACAACGACACTAATGTTTGTACTTGACAGAGCTGCACCGTTTGTGAGAAGTTCTCACGGCTCTATTTATGTCACACTACATGGAGGCATTATTTACATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACTCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCATGCTGACCTT---GTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTTGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >Cat2_day21_withoutdeletion_NA_AMD11167_1_2013_Belgium_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGTCTGTGTCAGTGTCTTAATGTTTAAGATAATATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTGGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAGCTTCTCAATGGTGATTTTATATATATATTTTCACAGGAAGCCGTGGTCGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >80F_ORF_3c_AJO27016_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTACTCAACATGTGGTTGTTAATAACACACCACATTTTAATACT------------------GTAGTGCAACAACATCATGTTGTTAGTGCTAATGTTAAAAGTTTTCATCTAGAGTTCAGCATAGCTGTTCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGCGTGTGTCGGTATCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTCACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCATTTACTTAGCATACTTTTGGTATGTTAATAGTAAATTTGAATTTATTTTATATAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTGTATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAA---CGTGTCTATGATGTTTCC--------------------- >UU31_NA_ADL71489_1_2008_01_25_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTAATAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAATATTAAAAGTTTTCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCGTTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTTGTTTACTTGGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATCTTATATAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGGGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGATCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGGCCGTAGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >TGEV_USA_Minnesota150_2013_NSP3b_ASV64404_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTCAATAACACAGCAAATGTGCATCATACACAACAAGACCATGTTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTCGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCC--------------------- >virulent_Purdue_NA_ABG89332_1_1952_USA_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >HLJ_071_NA_ASB15741_1_2016_07_01_China_Dog_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAACACTCTTAGTTTTGTAATTGTTAGTAACCATGTTATTGTCAATAACACAGCAAATGTGCATACTACACAACAAGAACATGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAACTATTATCCAGAGTTCAGCATCGCTGTACTCTTTGTATCATTTTTGGCTTTGTACCGTAGTACAAACTTTAAGACTTGTGTCGGCATCTTAATGTTTAAGATTGTATCAATGACACTTATAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAATTGTCTTAGCTTTAAGATTTTGCTACTTAGCATACTTTTGGTATGTTAATAGTAGTTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATATATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATAACTATGACGTTCCCCAGGGCATTGACTGTCATAGA >TGEV_USA_Minnesota141_2007_NSP3b_ASV64324_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGCTAATAACACAGCAAATGTGCATCATACACAACAAGACCGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACCCTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCC--------------------- >28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTACTCAACATGTGGTTGTTAATAACACACCACATTTTAATACT------------------GTAGTGCAACAACATCATGTTGTTAGTGCTAATGTTAAAAGTTTTCATCTAGAGTTCAGCATAGCTGTTCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGCGTGTGTCGGTATCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTCACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCATTTACTTAGCATACTTTTGGTATGTTAATAGTAAATTTGAATTTATTTTATATAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTGTATGGAGGCATAAATTATATGTTCGTGAATGATCTTATGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTTTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAA---CGTGTCTATGATGTTTCC--------------------- >2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 ATGATTGGTGGGCTTTTTCTTAATACTCTTAGTTTTATAATTACTAGTCAACATGTTATAGTTAACAATACAGCAAATGTGCATCATATACAACAAGAACATGTTATAGTACAACAACAACAAATTGTTAGTGCTAGAACACAAAATTACTACCCAGAGTTCAGCATTGCTGTACTCTTTGTATTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTGTATCAATGACACTTATAGGGCCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTAGCTTTAAGATTTGTCTACTTGTCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATCTTATATAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCATATTGTACGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTCCC--------------------- >TGEV_USA_SouthDakota154_2014_NSP3b_ASV64440_1_2014_02_05_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTCACTAACACAGCAAATGTGCATCATACACAACAAGACCATGTTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTATATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTCGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCC--------------------- >virulent_Miller_M6_NA_ABG89294_1_NA_USA_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATAAAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCGTACCTATGACGTTTCC--------------------- >UU10_NA_ACT10940_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACACTAGGTTTTATAGTTACTAATCAACATGTGATTGTCAATAACACTCCACATGTTAATTCT------------------ATATTACAACAACATCATGTTGTTAGTGCTAATATTAAAAGTTTTCATTTAGAGTTCAGCATTGCTGTTCTCTTTGTTTTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCATCTACTTAGCATACTTCTGGTATGTTAATAGTAGATTCGAATTTATCTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGATCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGGCCGTAGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >TGEV_USA_Illinois139_2006_NSP3b_ASV64306_1_2006_11_17_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTCAATAACACAGCACATGTGCATCATACACAACAAGACCGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCTTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACATTTCC--------------------- >TGEV_USA_Tennessee144_2008_NSP3b_ASV64351_1_2008_04_15_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTCAATAACACAGCAAATGTGCATCATACACAACAAGACCGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCC--------------------- >TGEV_USA_Illinois149_2013_NSP3b_ASV64395_1_2013_02_28_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTCAATAACACAGCAAATGTGCATCATACACAACAAGACCATGTTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTCGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCC--------------------- >DF_2_ORF3c_AFH55123_1_NA_NA_Cat_Alphacoronavirus_1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTAAGATTGTATCAATGACACTTGTAGGGCCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTAGCTTTAAGATTTTTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATATAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATATATGTATTTTCACAGGAGCCCGTAGCCGGTGTTTACAATGCAGCCTCTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATAACTATGACGTTCTC---------------------
>TGEV_USA_Illinois146_2008_NSP3b_ASV64369_1_2008_04_09_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDRVIVQQHHVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------ - >TGEV_USA_Minnesota152_2014_NSP3b_ASV64422_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTFLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVQGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------ - >TGEV_USA_Minnesota148_2013_NSP3b_ASV64386_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHHVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------ - >23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFIITSQHVIVNTTANVHHIQQEHVIVQQQQIVSARTQNY YPEFSIAVLFVLFLALYRSTNFKACVGILMFKIVAMTLIGPMLIAFGYYI DGIVTTTVLALRFIYLSYFWYANSRFEFVLFNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMLVNDLTLHFVDPMLVRIAIRGLAHADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVLNEIDLKEEEEEHIYDVPEGINCH R >TGEV_USA_Minnesota153_2014_NSP3b_ASV64431_1_2014_02_04_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTFLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------ - >27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSF HLEFSIAVLFVLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYI DGIVTTTVLALRFIYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVV-------MQPFLRRL-------------------- - >TGEV_USA_NorthCarolina140_2007_NSP3b_ASV64315_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTAHVHHTQQDRVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDIS------ - >26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSF HLEFSIAVLFVLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYI DGIVTTTVLALRFIYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVV-------MQPFLRRL-------------------- - >65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSF HLEFSIAVLFVLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYI DGIVTTTVLALRFIYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >TGEV_USA_Z_1986_NSP3b_ASV64279_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------ - >TGEV_USA_Wisconsin151_2014_NSP3b_ASV64413_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTFLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------ - >AYU_NA_AEM55568_1_2009_China_Swine_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHHVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------ - >A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHVIVNNTANVHFTQQEHVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKIVSMTLIGPMLIAYGYYI DGIVTTTVLSLRFLYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HRSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVP------ - >TS_nsp3b_ABC72416_1_NA_NA_Swine_Alphacoronavirus_1 MIGGLSLNTLSFVIVSNHSIVNNTANVHHIKQERVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVDDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDRAYDVS------ - >TN_449_NA_AFG19741_1_NA_NA_Dog_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHVIVNNTANVHTTQQEHVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKIVSMTLIGPMLIAYGYYI DGIVTTIVLALRFCYLAYFWYVNSSFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHNYDVPQGIDCH R >TH_98_NA_AML22778_1_1998_02_10_China_Swine_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHHVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------ - >Cat1_day7_NA_AMD11145_1_2013_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >CCoV_NTU336_F_2008_ORF3c_ADB28910_1_2008_11_Taiwan_Dog_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHVVVNNTENVQHIQQENVIVQQHHVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKIVSMTLIGPMLIAYGYYI DGIVTTTVLALRFFYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVP------ - >UU18_NA_ADL71458_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSANIKSF HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFIYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAVRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >UU19_NA_ADO39831_1_2007_08_23_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLGFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKMCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFIYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVCIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >Cat2_day84_NA_AMD11211_1_2013_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >Cat_1_Karlslunde_NA_ASU62502_1_2015_02_01_Denmark_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVTVNNTPHVNS------IVQQHHVVSASIKRF HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >UU2_NA_ACT10951_1_1993_03_30_USA_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >UU22_NA_ADC35464_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYV DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >UU20_NA_ADO39842_1_2007_08_23_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSANIKSF HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAVRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-CVYDVS------ - >FCoVWSU791146_P50_ORF3c_AGZ84539_1_2011_USA_Cat_Alphacoronavirus_1 -------------------------------------------------- -----------------------------MFKIVSMTLVGPMLIAYGYYI DGIVTITVLALRFLYLAYFWYVNSRSEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVRIAIRGLAHADLTVFRAVEL LNGDFIYVFSQEPVAGVYNAASSQAVLNEIDLKEEEEDHNYDVP------ - >Cat3_day9_NA_AMD11178_1_2013_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >UU54_NA_AEK25524_1_2010_03_12_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVVVNNTPHLQT------VVQQHHVVSANIKSS HLEFSIAVLFILFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFIYLAYFWYVNSRFEFLLYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-SVYDVS------ - >UU7_NA_ACT10879_1_2007_04_25_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFIYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFVRSS HGSIYVTLHGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >Felis_catus_NLD_UU88_2010_NS3c_AGT52083_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTSHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFELILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >DF_2_R3i_ORF3c_AFH55114_1_NA_NA_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIITSQHVIVNNTANVHHIQQEHVIVQQQQIVSARTQNY YPEFSIAVLFVLFLALYRSTNFKACVGILMFKIVAMTLIGPMLIAFGYYI DGIVTTTVLALRFIYLAYFWYANSRFEFILFNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMLVNDLTLHFVDPMLVRIAIRGLAHADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVLNEIDLKEEEEEHIYDVPEGINCH R >WSU_79_1683_NA_AFH58018_1_NA_NA_Unknown_Alphacoronavirus_1 -------------------------------------------------- -----------------------------MFKIVSMTLIGPMLIAYGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEID------------------- - >attenuated_H_NA_ABU49661_1_NA_China_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHIKQERVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRATPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDRTYDVS------ - >HLJ_DQ_2016_01_NA_ASB16890_1_2016_10_China_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVSVNNTPHVNS------IVQQHHVVSANIKSF HLEFSIAVLFVLFLALYRSTNFKMCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >HLJ_072_NA_ASB15751_1_2016_07_01_China_Dog_Alphacoronavirus_1 -------------------------------------------------- -----------------------------MFKIVSMTLIGPMLIAYGYYI DGIVTTIVLALRFCYLAYFWYVNSSFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHNYDVPQGIDCH R >HLJ_HRB_2016_10_NA_AUG98122_1_2016_11_China_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTSHVNS------IVQQHHVVSANIKSF HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFIYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMLVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >ISU_1_NA_ABG89311_1_NA_USA_Swine_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHH--------------------- ------------------TQQVKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTFLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDFMLHFVDPMLVSIAIRGLTHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEEGDRTYDVS------ - >Italy_213306_2009_NA_YP_009199244_1_2009_09_04_Italy_Swine_Alphacoronavirus_1 MIGGLFLNTLSFLIVSNHSIVNNTANVHHTQHERIIVQQHHVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGVVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HNSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQVVLNEIDLKEEEGDHTYDVS------ - >JS2012_ORF3b_AMB66490_1_2012_China_Swine_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHIKLERVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDRTYDVS------ - >H16_NA_ACN71198_1_1973_China_Swine_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHIKQERVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDRTYDVS------ - >Cat2_day21_deletion_NA_AMD11156_1_2013_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >Cat1_day28_withoutdeletion_NA_AMD11200_1_2013_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >TGEV_HX_NA_AGM75128_1_2012_05_05_China_Swine_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHHVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------ - >2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHVIVNNTANVHSTQQEHVIVQQHQFVNARTQNY YPEFSIAVLFVLFLALYRSTNFKTCVGILMFKIVSMTLIGPMLIAYGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPLMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTIVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVP------ - >RM_NA_ACT10857_1_2002_01_28_USA_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVVANNTPHFHG------LVQQHQVVSANIKSS HLEFSIAALFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAVRGLVRADLTVVRAVEL LNGDFIYVFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >Cat3_day28_deletion_NA_AMD11222_1_2013_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >SC_Y_nsp3b_ABD97837_1_NA_China_Unknown_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------ - >attenuated_Purdue_P115_NA_ABG89326_1_NA_NA_Swine_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------ - >TGEV_USA_Minnesota138_2006_NSP3b_ASV64297_1_2006_11_08_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDRVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------ - >TGEV_USA_NorthCarolina142_2007_NSP3b_ASV64333_1_2007_02_16_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDRVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------ - >Cat1_day28_deletion_NA_AMD11189_1_2013_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >TGEV_USA_Iowa143_2008_NSP3b_ASV64342_1_2008_03_06_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDRVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------ - >TGEV_AHHF_NA_AQT01351_1_2015_12_22_China_Swine_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------ - >SeCoV_1480_Murcia_Lorca_gp5_QKV43715_1_2014_05_30_Spain_Swine_Alphacoronavirus_1 MIGGLFLNTLSFLIVSNHSIVNNTANVHHTQHERIIVQQHHVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGVVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HNSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQVVLNEIDLKEEEGDHTYDVS------ - >UU11_NA_ACT10868_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLGFIVTNQHVIVNNTPHVNS------ILQQHHVVSANIKSF HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFIYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >PRCV_USA_Minnesota_46140_2016_ORF3b_ASV45150_1_2016_11_01_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQNRVIVQQHQVVSARTQNY YPEFSIAVLFISFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMLVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEENSDRTYDIS------ - >UU40_NA_ADO39820_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVNNQHVVVNNTPHVNS------IVQQHHVVSANIKSF HLEFSIAVPFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >TGEV_Mex_145_2008_NSP3b_ASV64360_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------ - >HLJ_HRB_2016_13_NA_AUG98144_1_2016_11_China_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTSHVNS------IVQQHHVVSANIKSF HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFIYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMLVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >UNKNOWN_HQ012372_NA_ADL71500_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >CB_05_ORF3c_AKA65832_1_2005_Italy_Dog_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHVIVNNTANVHSIQQEHVIVQQHQVVSARTQNY YPEFSIAVLFVLFLALYRSTNFKTCVGILMFKIVSMTLIGPMLIAYGYYI DGIVTTTVLALRFVYLSYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVP------ - >WH_1_nsp3b_ADY39742_1_NA_China_Swine_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------ - >TGEV_USA_HB_1988_NSP3b_ASV64288_1_1988_USA_Unknown_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------ - >TGEV_USA_Oklahoma147_2012_NSP3b_ASV64377_1_2012_11_29_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHHVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------ - >1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHVFVNNTANVHHIQQDHVLVQQHQVVSARTQNY YPEFSIAVLFVLFLALYRSTNFKTCVGILMFKIVSMTLIGPMLIAYGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVP------ - >OH7269_ORF3b_AKV62757_1_2014_07_24_USA_Swine_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQNRVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLIFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGGFIYIFSQEPVVGVYNASFSQVELNEIDLKEEKVDRTYDVSQGIDCH R >FCoVWSU791146_P1_ORF3c_AGZ84519_1_2011_USA_Cat_Alphacoronavirus_1 -------------------------------------------------- -----------------------------MFKIVSMTLVGPMLIAYGYYI DGIVTITVLALRFFYLAYFWYVNSRSEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVRIAIRGLAHADLTVFRAVEL LNGDFIYVFSQEPVAGVYNAASSQAVLNEIDLKEEEEDHNYDVP------ - >Cat3_day28_withoutdeletion_NA_AMD11233_1_2013_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >UG_FH8_NA_ASU62491_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVTVNNTPHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >SHXB_NA_AKA60056_1_2013_03_07_China_Swine_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------ - >67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSF HLEFSIAVLFVLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYI DGIVTTTVLALRFIYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >FCoVWSU791146_P8_ORF3c_AGZ84529_1_2011_USA_Cat_Alphacoronavirus_1 -------------------------------------------------- -----------------------------MFKIVSMTLVGPMLIAYGYYI DGIGTITVLALRFFYLAYFWIVNSRSEFILYHTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVRIAIRGLAHADLTVFRAVEL LNGDFIYVFSQEPVAGVYNAASSQAVLNEIDLKEEEEDHNYDVP------ - >UU23_NA_ADC35475_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYV DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >UU4_NA_ACT10888_1_2007_02_02_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVVVNNTSHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVITTVLALRFIYLAYFWCVNSRFEFILYNTTTLMFVLDRAAPFVRSS HGSIYVTLHGGIIYMFVNDLTLHFVDSMLVGIAIRGLVHADL-VVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >Cat2_day21_withoutdeletion_NA_AMD11167_1_2013_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSF HLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >80F_ORF_3c_AJO27016_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSF HLEFSIAVLFVLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYI DGIVTTTVLALRFIYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >UU31_NA_ADL71489_1_2008_01_25_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVNNQHVIVNNTPHVNS------IVQQHHVVSANIKSF HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >TGEV_USA_Minnesota150_2013_NSP3b_ASV64404_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHHVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------ - >virulent_Purdue_NA_ABG89332_1_1952_USA_Swine_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS------ - >HLJ_071_NA_ASB15741_1_2016_07_01_China_Dog_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHVIVNNTANVHTTQQEHVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKIVSMTLIGPMLIAYGYYI DGIVTTIVLALRFCYLAYFWYVNSSFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHNYDVPQGIDCH R >TGEV_USA_Minnesota141_2007_NSP3b_ASV64324_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIANNTANVHHTQQDRVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------ - >28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSF HLEFSIAVLFVLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYI DGIVTTTVLALRFIYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLMLHFVDPMLVGIAIRGLVRADLTVFRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 MIGGLFLNTLSFIITSQHVIVNNTANVHHIQQEHVIVQQQQIVSARTQNY YPEFSIAVLFVLFLALYRSTNFKTCVGILMFKIVSMTLIGPMLIAYGYYI DGIVTTTVLALRFVYLSYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSS HSSIYVILYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVP------ - >TGEV_USA_SouthDakota154_2014_NSP3b_ASV64440_1_2014_02_05_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVTNTANVHHTQQDHVIVQQHHVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------ - >virulent_Miller_M6_NA_ABG89294_1_NA_USA_Swine_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHIKQERVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYI DGIVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDRTYDVS------ - >UU10_NA_ACT10940_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLGFIVTNQHVIVNNTPHVNS------ILQQHHVVSANIKSF HLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYI DGIVTTTVLALRFIYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSS HGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVEL LNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS------ - >TGEV_USA_Illinois139_2006_NSP3b_ASV64306_1_2006_11_17_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTAHVHHTQQDRVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDIS------ - >TGEV_USA_Tennessee144_2008_NSP3b_ASV64351_1_2008_04_15_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDRVIVQQHQVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------ - >TGEV_USA_Illinois149_2013_NSP3b_ASV64395_1_2013_02_28_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHHVVSARTQNY YPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYI DGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVEL LNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS------ - >DF_2_ORF3c_AFH55123_1_NA_NA_Cat_Alphacoronavirus_1 -------------------------------------------------- -----------------------------MFKIVSMTLVGPMLIAYGYYI DGIVTTTVLALRFFYLAYFWYVNSRFEFILYNITTLMFVHGRAAPFMRSS HSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVEL LNGDFIYVFSQEPVAGVYNAASSQAVLNEIDLKEEEEDHNYDVL------ -
Reading sequence file /data//pss_subsets/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/fasta/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1
Found 90 sequences of length 753
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 8.2%
Found 212 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0% 72.2% 99.7%100.0%
Using a window size of 80 with k as 23
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 96 polymorphic sites
**p-Value(s)**
----------
NSS: 0.00e+00 (1000 permutations)
Max Chi^2: 4.20e-02 (1000 permutations)
PHI (Permutation): 9.97e-01 (1000 permutations)
PHI (Normal): 9.98e-01
#NEXUS
[ID: 8097819206]
begin taxa;
dimensions ntax=90;
taxlabels
TGEV_USA_Illinois146_2008_NSP3b_ASV64369_1_2008_04_09_USA_Unknown_Alphacoronavirus_1
TGEV_USA_Z_1986_NSP3b_ASV64279_1_2006_12_08_USA_Unknown_Alphacoronavirus_1
TGEV_USA_Wisconsin151_2014_NSP3b_ASV64413_1_2014_01_17_USA_Unknown_Alphacoronavirus_1
AYU_NA_AEM55568_1_2009_China_Swine_Alphacoronavirus_1
A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1
TS_nsp3b_ABC72416_1_NA_NA_Swine_Alphacoronavirus_1
TN_449_NA_AFG19741_1_NA_NA_Dog_Alphacoronavirus_1
TH_98_NA_AML22778_1_1998_02_10_China_Swine_Alphacoronavirus_1
Cat1_day7_NA_AMD11145_1_2013_Belgium_Cat_Alphacoronavirus_1
CCoV_NTU336_F_2008_ORF3c_ADB28910_1_2008_11_Taiwan_Dog_Alphacoronavirus_1
UU18_NA_ADL71458_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1
TGEV_USA_Minnesota152_2014_NSP3b_ASV64422_1_2014_01_31_USA_Unknown_Alphacoronavirus_1
UU19_NA_ADO39831_1_2007_08_23_Netherlands_Cat_Alphacoronavirus_1
Cat2_day84_NA_AMD11211_1_2013_Belgium_Cat_Alphacoronavirus_1
Cat_1_Karlslunde_NA_ASU62502_1_2015_02_01_Denmark_Cat_Alphacoronavirus_1
UU2_NA_ACT10951_1_1993_03_30_USA_Cat_Alphacoronavirus_1
UU22_NA_ADC35464_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1
UU20_NA_ADO39842_1_2007_08_23_Netherlands_Cat_Alphacoronavirus_1
FCoVWSU791146_P50_ORF3c_AGZ84539_1_2011_USA_Cat_Alphacoronavirus_1
Cat3_day9_NA_AMD11178_1_2013_Belgium_Cat_Alphacoronavirus_1
UU54_NA_AEK25524_1_2010_03_12_Netherlands_Cat_Alphacoronavirus_1
UU7_NA_ACT10879_1_2007_04_25_Netherlands_Cat_Alphacoronavirus_1
TGEV_USA_Minnesota148_2013_NSP3b_ASV64386_1_2013_01_04_USA_Unknown_Alphacoronavirus_1
Felis_catus_NLD_UU88_2010_NS3c_AGT52083_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1
DF_2_R3i_ORF3c_AFH55114_1_NA_NA_Cat_Alphacoronavirus_1
WSU_79_1683_NA_AFH58018_1_NA_NA_Unknown_Alphacoronavirus_1
attenuated_H_NA_ABU49661_1_NA_China_Unknown_Alphacoronavirus_1
HLJ_DQ_2016_01_NA_ASB16890_1_2016_10_China_Cat_Alphacoronavirus_1
HLJ_072_NA_ASB15751_1_2016_07_01_China_Dog_Alphacoronavirus_1
HLJ_HRB_2016_10_NA_AUG98122_1_2016_11_China_Cat_Alphacoronavirus_1
ISU_1_NA_ABG89311_1_NA_USA_Swine_Alphacoronavirus_1
Italy_213306_2009_NA_YP_009199244_1_2009_09_04_Italy_Swine_Alphacoronavirus_1
JS2012_ORF3b_AMB66490_1_2012_China_Swine_Alphacoronavirus_1
23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_1
H16_NA_ACN71198_1_1973_China_Swine_Alphacoronavirus_1
Cat2_day21_deletion_NA_AMD11156_1_2013_Belgium_Cat_Alphacoronavirus_1
Cat1_day28_withoutdeletion_NA_AMD11200_1_2013_Belgium_Cat_Alphacoronavirus_1
TGEV_HX_NA_AGM75128_1_2012_05_05_China_Swine_Alphacoronavirus_1
2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_1
RM_NA_ACT10857_1_2002_01_28_USA_Cat_Alphacoronavirus_1
Cat3_day28_deletion_NA_AMD11222_1_2013_Belgium_Cat_Alphacoronavirus_1
SC_Y_nsp3b_ABD97837_1_NA_China_Unknown_Alphacoronavirus_1
attenuated_Purdue_P115_NA_ABG89326_1_NA_NA_Swine_Alphacoronavirus_1
TGEV_USA_Minnesota138_2006_NSP3b_ASV64297_1_2006_11_08_USA_Unknown_Alphacoronavirus_1
TGEV_USA_Minnesota153_2014_NSP3b_ASV64431_1_2014_02_04_USA_Unknown_Alphacoronavirus_1
TGEV_USA_NorthCarolina142_2007_NSP3b_ASV64333_1_2007_02_16_USA_Unknown_Alphacoronavirus_1
Cat1_day28_deletion_NA_AMD11189_1_2013_Belgium_Cat_Alphacoronavirus_1
TGEV_USA_Iowa143_2008_NSP3b_ASV64342_1_2008_03_06_USA_Unknown_Alphacoronavirus_1
TGEV_AHHF_NA_AQT01351_1_2015_12_22_China_Swine_Alphacoronavirus_1
SeCoV_1480_Murcia_Lorca_gp5_QKV43715_1_2014_05_30_Spain_Swine_Alphacoronavirus_1
UU11_NA_ACT10868_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1
PRCV_USA_Minnesota_46140_2016_ORF3b_ASV45150_1_2016_11_01_USA_Unknown_Alphacoronavirus_1
UU40_NA_ADO39820_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1
TGEV_Mex_145_2008_NSP3b_ASV64360_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1
HLJ_HRB_2016_13_NA_AUG98144_1_2016_11_China_Cat_Alphacoronavirus_1
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
UNKNOWN_HQ012372_NA_ADL71500_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1
CB_05_ORF3c_AKA65832_1_2005_Italy_Dog_Alphacoronavirus_1
WH_1_nsp3b_ADY39742_1_NA_China_Swine_Alphacoronavirus_1
TGEV_USA_HB_1988_NSP3b_ASV64288_1_1988_USA_Unknown_Alphacoronavirus_1
TGEV_USA_Oklahoma147_2012_NSP3b_ASV64377_1_2012_11_29_USA_Unknown_Alphacoronavirus_1
1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_1
OH7269_ORF3b_AKV62757_1_2014_07_24_USA_Swine_Alphacoronavirus_1
FCoVWSU791146_P1_ORF3c_AGZ84519_1_2011_USA_Cat_Alphacoronavirus_1
Cat3_day28_withoutdeletion_NA_AMD11233_1_2013_Belgium_Cat_Alphacoronavirus_1
UG_FH8_NA_ASU62491_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1
TGEV_USA_NorthCarolina140_2007_NSP3b_ASV64315_1_2007_02_08_USA_Unknown_Alphacoronavirus_1
SHXB_NA_AKA60056_1_2013_03_07_China_Swine_Alphacoronavirus_1
67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
FCoVWSU791146_P8_ORF3c_AGZ84529_1_2011_USA_Cat_Alphacoronavirus_1
UU23_NA_ADC35475_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1
UU4_NA_ACT10888_1_2007_02_02_Netherlands_Cat_Alphacoronavirus_1
Cat2_day21_withoutdeletion_NA_AMD11167_1_2013_Belgium_Cat_Alphacoronavirus_1
80F_ORF_3c_AJO27016_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
UU31_NA_ADL71489_1_2008_01_25_Netherlands_Cat_Alphacoronavirus_1
TGEV_USA_Minnesota150_2013_NSP3b_ASV64404_1_2013_03_01_USA_Unknown_Alphacoronavirus_1
virulent_Purdue_NA_ABG89332_1_1952_USA_Swine_Alphacoronavirus_1
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
HLJ_071_NA_ASB15741_1_2016_07_01_China_Dog_Alphacoronavirus_1
TGEV_USA_Minnesota141_2007_NSP3b_ASV64324_1_2007_02_08_USA_Unknown_Alphacoronavirus_1
28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_1
TGEV_USA_SouthDakota154_2014_NSP3b_ASV64440_1_2014_02_05_USA_Unknown_Alphacoronavirus_1
virulent_Miller_M6_NA_ABG89294_1_NA_USA_Swine_Alphacoronavirus_1
UU10_NA_ACT10940_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1
TGEV_USA_Illinois139_2006_NSP3b_ASV64306_1_2006_11_17_USA_Unknown_Alphacoronavirus_1
TGEV_USA_Tennessee144_2008_NSP3b_ASV64351_1_2008_04_15_USA_Unknown_Alphacoronavirus_1
TGEV_USA_Illinois149_2013_NSP3b_ASV64395_1_2013_02_28_USA_Unknown_Alphacoronavirus_1
65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
DF_2_ORF3c_AFH55123_1_NA_NA_Cat_Alphacoronavirus_1
;
end;
begin trees;
translate
1 TGEV_USA_Illinois146_2008_NSP3b_ASV64369_1_2008_04_09_USA_Unknown_Alphacoronavirus_1,
2 TGEV_USA_Z_1986_NSP3b_ASV64279_1_2006_12_08_USA_Unknown_Alphacoronavirus_1,
3 TGEV_USA_Wisconsin151_2014_NSP3b_ASV64413_1_2014_01_17_USA_Unknown_Alphacoronavirus_1,
4 AYU_NA_AEM55568_1_2009_China_Swine_Alphacoronavirus_1,
5 A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1,
6 TS_nsp3b_ABC72416_1_NA_NA_Swine_Alphacoronavirus_1,
7 TN_449_NA_AFG19741_1_NA_NA_Dog_Alphacoronavirus_1,
8 TH_98_NA_AML22778_1_1998_02_10_China_Swine_Alphacoronavirus_1,
9 Cat1_day7_NA_AMD11145_1_2013_Belgium_Cat_Alphacoronavirus_1,
10 CCoV_NTU336_F_2008_ORF3c_ADB28910_1_2008_11_Taiwan_Dog_Alphacoronavirus_1,
11 UU18_NA_ADL71458_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1,
12 TGEV_USA_Minnesota152_2014_NSP3b_ASV64422_1_2014_01_31_USA_Unknown_Alphacoronavirus_1,
13 UU19_NA_ADO39831_1_2007_08_23_Netherlands_Cat_Alphacoronavirus_1,
14 Cat2_day84_NA_AMD11211_1_2013_Belgium_Cat_Alphacoronavirus_1,
15 Cat_1_Karlslunde_NA_ASU62502_1_2015_02_01_Denmark_Cat_Alphacoronavirus_1,
16 UU2_NA_ACT10951_1_1993_03_30_USA_Cat_Alphacoronavirus_1,
17 UU22_NA_ADC35464_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1,
18 UU20_NA_ADO39842_1_2007_08_23_Netherlands_Cat_Alphacoronavirus_1,
19 FCoVWSU791146_P50_ORF3c_AGZ84539_1_2011_USA_Cat_Alphacoronavirus_1,
20 Cat3_day9_NA_AMD11178_1_2013_Belgium_Cat_Alphacoronavirus_1,
21 UU54_NA_AEK25524_1_2010_03_12_Netherlands_Cat_Alphacoronavirus_1,
22 UU7_NA_ACT10879_1_2007_04_25_Netherlands_Cat_Alphacoronavirus_1,
23 TGEV_USA_Minnesota148_2013_NSP3b_ASV64386_1_2013_01_04_USA_Unknown_Alphacoronavirus_1,
24 Felis_catus_NLD_UU88_2010_NS3c_AGT52083_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1,
25 DF_2_R3i_ORF3c_AFH55114_1_NA_NA_Cat_Alphacoronavirus_1,
26 WSU_79_1683_NA_AFH58018_1_NA_NA_Unknown_Alphacoronavirus_1,
27 attenuated_H_NA_ABU49661_1_NA_China_Unknown_Alphacoronavirus_1,
28 HLJ_DQ_2016_01_NA_ASB16890_1_2016_10_China_Cat_Alphacoronavirus_1,
29 HLJ_072_NA_ASB15751_1_2016_07_01_China_Dog_Alphacoronavirus_1,
30 HLJ_HRB_2016_10_NA_AUG98122_1_2016_11_China_Cat_Alphacoronavirus_1,
31 ISU_1_NA_ABG89311_1_NA_USA_Swine_Alphacoronavirus_1,
32 Italy_213306_2009_NA_YP_009199244_1_2009_09_04_Italy_Swine_Alphacoronavirus_1,
33 JS2012_ORF3b_AMB66490_1_2012_China_Swine_Alphacoronavirus_1,
34 23_03_ORF3c_AKZ66474_1_2003_Italy_Unknown_Alphacoronavirus_1,
35 H16_NA_ACN71198_1_1973_China_Swine_Alphacoronavirus_1,
36 Cat2_day21_deletion_NA_AMD11156_1_2013_Belgium_Cat_Alphacoronavirus_1,
37 Cat1_day28_withoutdeletion_NA_AMD11200_1_2013_Belgium_Cat_Alphacoronavirus_1,
38 TGEV_HX_NA_AGM75128_1_2012_05_05_China_Swine_Alphacoronavirus_1,
39 2020_7_ORF3c_QQA04989_1_2020_United_Kingdom_Dog_Alphacoronavirus_1,
40 RM_NA_ACT10857_1_2002_01_28_USA_Cat_Alphacoronavirus_1,
41 Cat3_day28_deletion_NA_AMD11222_1_2013_Belgium_Cat_Alphacoronavirus_1,
42 SC_Y_nsp3b_ABD97837_1_NA_China_Unknown_Alphacoronavirus_1,
43 attenuated_Purdue_P115_NA_ABG89326_1_NA_NA_Swine_Alphacoronavirus_1,
44 TGEV_USA_Minnesota138_2006_NSP3b_ASV64297_1_2006_11_08_USA_Unknown_Alphacoronavirus_1,
45 TGEV_USA_Minnesota153_2014_NSP3b_ASV64431_1_2014_02_04_USA_Unknown_Alphacoronavirus_1,
46 TGEV_USA_NorthCarolina142_2007_NSP3b_ASV64333_1_2007_02_16_USA_Unknown_Alphacoronavirus_1,
47 Cat1_day28_deletion_NA_AMD11189_1_2013_Belgium_Cat_Alphacoronavirus_1,
48 TGEV_USA_Iowa143_2008_NSP3b_ASV64342_1_2008_03_06_USA_Unknown_Alphacoronavirus_1,
49 TGEV_AHHF_NA_AQT01351_1_2015_12_22_China_Swine_Alphacoronavirus_1,
50 SeCoV_1480_Murcia_Lorca_gp5_QKV43715_1_2014_05_30_Spain_Swine_Alphacoronavirus_1,
51 UU11_NA_ACT10868_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1,
52 PRCV_USA_Minnesota_46140_2016_ORF3b_ASV45150_1_2016_11_01_USA_Unknown_Alphacoronavirus_1,
53 UU40_NA_ADO39820_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1,
54 TGEV_Mex_145_2008_NSP3b_ASV64360_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1,
55 HLJ_HRB_2016_13_NA_AUG98144_1_2016_11_China_Cat_Alphacoronavirus_1,
56 27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
57 UNKNOWN_HQ012372_NA_ADL71500_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1,
58 CB_05_ORF3c_AKA65832_1_2005_Italy_Dog_Alphacoronavirus_1,
59 WH_1_nsp3b_ADY39742_1_NA_China_Swine_Alphacoronavirus_1,
60 TGEV_USA_HB_1988_NSP3b_ASV64288_1_1988_USA_Unknown_Alphacoronavirus_1,
61 TGEV_USA_Oklahoma147_2012_NSP3b_ASV64377_1_2012_11_29_USA_Unknown_Alphacoronavirus_1,
62 1_71_NA_AFG19732_1_NA_NA_Dog_Alphacoronavirus_1,
63 OH7269_ORF3b_AKV62757_1_2014_07_24_USA_Swine_Alphacoronavirus_1,
64 FCoVWSU791146_P1_ORF3c_AGZ84519_1_2011_USA_Cat_Alphacoronavirus_1,
65 Cat3_day28_withoutdeletion_NA_AMD11233_1_2013_Belgium_Cat_Alphacoronavirus_1,
66 UG_FH8_NA_ASU62491_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1,
67 TGEV_USA_NorthCarolina140_2007_NSP3b_ASV64315_1_2007_02_08_USA_Unknown_Alphacoronavirus_1,
68 SHXB_NA_AKA60056_1_2013_03_07_China_Swine_Alphacoronavirus_1,
69 67F_ORF_3c_AJO27006_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
70 FCoVWSU791146_P8_ORF3c_AGZ84529_1_2011_USA_Cat_Alphacoronavirus_1,
71 UU23_NA_ADC35475_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1,
72 UU4_NA_ACT10888_1_2007_02_02_Netherlands_Cat_Alphacoronavirus_1,
73 Cat2_day21_withoutdeletion_NA_AMD11167_1_2013_Belgium_Cat_Alphacoronavirus_1,
74 80F_ORF_3c_AJO27016_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
75 UU31_NA_ADL71489_1_2008_01_25_Netherlands_Cat_Alphacoronavirus_1,
76 TGEV_USA_Minnesota150_2013_NSP3b_ASV64404_1_2013_03_01_USA_Unknown_Alphacoronavirus_1,
77 virulent_Purdue_NA_ABG89332_1_1952_USA_Swine_Alphacoronavirus_1,
78 26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
79 HLJ_071_NA_ASB15741_1_2016_07_01_China_Dog_Alphacoronavirus_1,
80 TGEV_USA_Minnesota141_2007_NSP3b_ASV64324_1_2007_02_08_USA_Unknown_Alphacoronavirus_1,
81 28O_ORF_3c_AJO26986_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
82 2020_15_ORF3c_QQA04978_1_2020_United_Kingdom_Dog_Alphacoronavirus_1,
83 TGEV_USA_SouthDakota154_2014_NSP3b_ASV64440_1_2014_02_05_USA_Unknown_Alphacoronavirus_1,
84 virulent_Miller_M6_NA_ABG89294_1_NA_USA_Swine_Alphacoronavirus_1,
85 UU10_NA_ACT10940_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1,
86 TGEV_USA_Illinois139_2006_NSP3b_ASV64306_1_2006_11_17_USA_Unknown_Alphacoronavirus_1,
87 TGEV_USA_Tennessee144_2008_NSP3b_ASV64351_1_2008_04_15_USA_Unknown_Alphacoronavirus_1,
88 TGEV_USA_Illinois149_2013_NSP3b_ASV64395_1_2013_02_28_USA_Unknown_Alphacoronavirus_1,
89 65F_ORF_3c_AJO26996_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
90 DF_2_ORF3c_AFH55123_1_NA_NA_Cat_Alphacoronavirus_1
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:9.587193e-04,(23:9.000481e-04,61:8.778602e-04,76:8.321107e-04,83:3.492961e-03,88:9.038438e-04)1.000:3.466024e-03,((((((((2:8.355144e-04,(4:8.229095e-04,8:8.797965e-04,38:8.894615e-04)0.984:2.202758e-03,42:8.846568e-04,43:8.667079e-04,49:9.003782e-04,54:9.026747e-04,59:9.101143e-04,60:9.113626e-04,68:7.763699e-04)0.864:2.154173e-03,((5:1.576579e-02,(((7:8.403760e-04,29:1.312465e-03,79:8.751262e-04)1.000:9.056406e-03,((19:3.056014e-03,64:1.247877e-03,70:1.542993e-02)1.000:1.113359e-02,90:5.292874e-03)1.000:9.217375e-03)0.992:6.515899e-03,10:2.192681e-02)0.684:3.879957e-03)0.610:4.125802e-03,(((((((((((9:9.022271e-04,14:8.845909e-04,16:9.829787e-04,20:9.665176e-04,36:8.415754e-04,37:8.956522e-04,41:9.641800e-04,47:9.666123e-04,65:9.117904e-04,73:9.630801e-04)1.000:1.786226e-02,15:2.068317e-02)0.652:7.084164e-03,(11:1.879315e-02,(51:9.141452e-04,85:8.981267e-04)1.000:2.136542e-02)0.526:5.612064e-03,13:1.545234e-02,18:1.455242e-02,((21:1.773390e-02,40:3.776249e-02)0.678:6.109957e-03,((56:9.559673e-04,78:9.708343e-04)1.000:2.297168e-02,69:8.401599e-04,74:9.304733e-04,81:3.567354e-03,89:9.831302e-04)1.000:2.039669e-02)1.000:1.248753e-02,(22:1.098912e-03,72:1.716207e-02)1.000:2.482942e-02,24:1.701296e-02,28:1.984895e-02,(30:9.052568e-04,55:9.419007e-04)1.000:1.571362e-02,(53:3.561917e-03,75:9.584014e-04)1.000:1.132697e-02)0.516:3.554217e-03,((17:9.138444e-04,71:9.038391e-04)0.974:2.292816e-03,57:1.058198e-03)1.000:1.192899e-02)0.515:5.263716e-03,66:1.913249e-02)1.000:8.639294e-02,(25:3.043992e-03,34:1.276390e-02)1.000:1.692653e-02)1.000:2.640248e-02,82:1.470709e-02)0.996:1.425366e-02,62:1.506117e-02)0.947:7.755807e-03,58:6.933540e-03)0.720:6.920364e-03,39:2.283201e-02)0.649:6.519056e-03,26:8.497158e-03)0.556:5.952239e-03)1.000:1.693199e-02,77:9.300784e-04)1.000:7.249629e-03,(6:4.915229e-03,27:2.095833e-03,33:2.116428e-03,35:9.030229e-04,84:8.546173e-04)0.944:2.266112e-03)0.991:5.875198e-03,(32:2.056470e-03,50:9.054363e-04)1.000:2.766673e-02)1.000:9.161505e-03,31:1.862615e-02)0.999:4.468030e-03,(52:1.393839e-02,63:1.521689e-02)0.856:3.151254e-03)0.879:2.395052e-03,(3:8.309545e-04,12:2.106682e-03,45:8.957782e-04)1.000:7.496408e-03,80:3.456119e-03)0.714:2.077892e-03,44:2.065815e-03,46:9.027797e-04,48:2.192898e-03,(67:8.991851e-04,86:8.845698e-04)0.998:4.532380e-03,87:8.224990e-04)0.945:2.194248e-03);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:9.587193e-04,(23:9.000481e-04,61:8.778602e-04,76:8.321107e-04,83:3.492961e-03,88:9.038438e-04):3.466024e-03,((((((((2:8.355144e-04,(4:8.229095e-04,8:8.797965e-04,38:8.894615e-04):2.202758e-03,42:8.846568e-04,43:8.667079e-04,49:9.003782e-04,54:9.026747e-04,59:9.101143e-04,60:9.113626e-04,68:7.763699e-04):2.154173e-03,((5:1.576579e-02,(((7:8.403760e-04,29:1.312465e-03,79:8.751262e-04):9.056406e-03,((19:3.056014e-03,64:1.247877e-03,70:1.542993e-02):1.113359e-02,90:5.292874e-03):9.217375e-03):6.515899e-03,10:2.192681e-02):3.879957e-03):4.125802e-03,(((((((((((9:9.022271e-04,14:8.845909e-04,16:9.829787e-04,20:9.665176e-04,36:8.415754e-04,37:8.956522e-04,41:9.641800e-04,47:9.666123e-04,65:9.117904e-04,73:9.630801e-04):1.786226e-02,15:2.068317e-02):7.084164e-03,(11:1.879315e-02,(51:9.141452e-04,85:8.981267e-04):2.136542e-02):5.612064e-03,13:1.545234e-02,18:1.455242e-02,((21:1.773390e-02,40:3.776249e-02):6.109957e-03,((56:9.559673e-04,78:9.708343e-04):2.297168e-02,69:8.401599e-04,74:9.304733e-04,81:3.567354e-03,89:9.831302e-04):2.039669e-02):1.248753e-02,(22:1.098912e-03,72:1.716207e-02):2.482942e-02,24:1.701296e-02,28:1.984895e-02,(30:9.052568e-04,55:9.419007e-04):1.571362e-02,(53:3.561917e-03,75:9.584014e-04):1.132697e-02):3.554217e-03,((17:9.138444e-04,71:9.038391e-04):2.292816e-03,57:1.058198e-03):1.192899e-02):5.263716e-03,66:1.913249e-02):8.639294e-02,(25:3.043992e-03,34:1.276390e-02):1.692653e-02):2.640248e-02,82:1.470709e-02):1.425366e-02,62:1.506117e-02):7.755807e-03,58:6.933540e-03):6.920364e-03,39:2.283201e-02):6.519056e-03,26:8.497158e-03):5.952239e-03):1.693199e-02,77:9.300784e-04):7.249629e-03,(6:4.915229e-03,27:2.095833e-03,33:2.116428e-03,35:9.030229e-04,84:8.546173e-04):2.266112e-03):5.875198e-03,(32:2.056470e-03,50:9.054363e-04):2.766673e-02):9.161505e-03,31:1.862615e-02):4.468030e-03,(52:1.393839e-02,63:1.521689e-02):3.151254e-03):2.395052e-03,(3:8.309545e-04,12:2.106682e-03,45:8.957782e-04):7.496408e-03,80:3.456119e-03):2.077892e-03,44:2.065815e-03,46:9.027797e-04,48:2.192898e-03,(67:8.991851e-04,86:8.845698e-04):4.532380e-03,87:8.224990e-04):2.194248e-03);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -2344.89 -2383.32
2 -2343.70 -2375.58
--------------------------------------
TOTAL -2344.13 -2382.62
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.456464 0.001869 0.374098 0.538351 0.454159 932.54 1216.77 1.000
r(A<->C){all} 0.120457 0.000604 0.071226 0.167809 0.119123 883.42 885.56 1.000
r(A<->G){all} 0.282372 0.001399 0.210266 0.355270 0.281822 671.60 732.72 1.000
r(A<->T){all} 0.046773 0.000148 0.025730 0.070824 0.045955 1035.11 1054.67 1.000
r(C<->G){all} 0.058909 0.000497 0.021058 0.104925 0.056914 608.59 698.02 1.000
r(C<->T){all} 0.438620 0.001654 0.361310 0.517211 0.438733 447.61 556.22 1.000
r(G<->T){all} 0.052870 0.000210 0.025903 0.080814 0.051682 940.61 962.90 1.001
pi(A){all} 0.282581 0.000236 0.254312 0.313861 0.282287 1100.89 1147.25 1.001
pi(C){all} 0.170744 0.000163 0.144672 0.194130 0.170376 1069.96 1080.78 1.001
pi(G){all} 0.190468 0.000180 0.164190 0.215014 0.190072 841.81 956.63 1.000
pi(T){all} 0.356207 0.000270 0.324715 0.388956 0.356727 988.81 1039.46 1.001
alpha{1,2} 0.746113 0.261338 0.176924 1.816016 0.597796 638.85 753.36 1.001
alpha{3} 1.391806 0.849106 0.296931 3.343927 1.121170 804.38 836.07 1.001
pinvar{all} 0.323031 0.018332 0.037497 0.537164 0.338109 471.33 524.44 1.002
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
[2J[H /HYPHY 2.3.14.20190214beta(MP) for Linux on x86_64\ ***************** TYPES OF STANDARD ANALYSES ***************** (1) Selection Analyses (2) Evolutionary Hypothesis Testing (3) Relative evolutionary rate inference (4) Coevolutionary analysis (5) Basic Analyses (6) Codon Selection Analyses (7) Compartmentalization (8) Data File Tools (9) Miscellaneous (10) Model Comparison (11) Kernel Analysis Tools (12) Molecular Clock (13) Phylogeny Reconstruction (14) Positive Selection (15) Recombination (16) Selection/Recombination (17) Relative Rate (18) Relative Ratio (19) Substitution Rates Please select type of analyses you want to list (or press ENTER to process custom batch file):[2J[H***************** FILES IN 'Selection Analyses' ***************** (1) [MEME] Test for episodic site-level selection using MEME (Mixed Effects Model of Evolution). (2) [FEL] Test for pervasive site-level selection using FEL (Fixed Effects Likelihood). (3) [SLAC] Test for pervasive site-level selection using SLAC (Single Likelihood Ancestor Counting). (4) [FUBAR] Test for pervasive site-level selection using FUBAR (Fast Unconstrained Bayesian AppRoximation for inferring selection). (5) [BUSTED] Test for episodic gene-wide selection using BUSTED (Branch-site Unrestricted Statistical Test of Episodic Diversification). (6) [aBSREL] Test for lineage-specific evolution using the branch-site method aBS-REL (Adaptive Branch-Site Random Effects Likelihood). (7) [RELAX] Test for relaxation of selection pressure along a specified set of test branches using RELAX (a random effects test of selection relaxation). Please select the analysis you would like to perform (or press ENTER to return to the list of analysis types): Analysis Description -------------------- Perform a Fast Unbiased AppRoximate Bayesian (FUBAR) analysis of a coding sequence alignment to determine whether some sites have been subject to pervasive purifying or diversifying selection. v2.1 introduces two more methods for estimating the posterior distribution of grid weights: collapsed Gibbs MCMC (faster) and 0-th order Variation Bayes approximation (fastest). Please note that a FUBAR analysis generates a cache and a results JSON file in the same directory as directory as the original alignment. HyPhy needs to have write privileges to this directory. For example if the original file is in /home/sergei/FUBAR/data/pol.nex then at the end of a FUBAR run, there will also exist FUBAR-generated files /home/sergei/FUBAR/data/pol.nex.FUBAR.json, /home/sergei/FUBAR/data/pol.nex.fubrar.cache. They also provide checkpointing so that a partially completed analysis can be restarted. - __Requirements__: in-frame codon alignment (possibly partitioned) and a phylogenetic tree (one per partition) - __Citation__: FUBAR: a fast, unconstrained bayesian approximation for inferring selection (2013), Mol Biol Evol. 30(5):1196-205 - __Written by__: Sergei L Kosakovsky Pond - __Contact Information__: spond@temple.edu - __Analysis Version__: 2.1 ####Choose Genetic Code 1. [**Universal**] Universal code. (Genebank transl_table=1). 2. [**Vertebrate mtDNA**] Vertebrate mitochondrial DNA code. (Genebank transl_table=2). 3. [**Yeast mtDNA**] Yeast mitochondrial DNA code. (Genebank transl_table=3). 4. [**Mold/Protozoan mtDNA**] Mold, Protozoan and Coelenterate mitochondrial DNA and the Mycloplasma/Spiroplasma code. (Genebank transl_table=4). 5. [**Invertebrate mtDNA**] Invertebrate mitochondrial DNA code. (Genebank transl_table=5). 6. [**Ciliate Nuclear**] Ciliate, Dasycladacean and Hexamita Nuclear code. (Genebank transl_table=6). 7. [**Echinoderm mtDNA**] Echinoderm mitochondrial DNA code. (Genebank transl_table=9). 8. [**Euplotid Nuclear**] Euplotid Nuclear code. (Genebank transl_table=10). 9. [**Alt. Yeast Nuclear**] Alternative Yeast Nuclear code. (Genebank transl_table=12). 10. [**Ascidian mtDNA**] Ascidian mitochondrial DNA code. (Genebank transl_table=13). 11. [**Flatworm mtDNA**] Flatworm mitochondrial DNA code. (Genebank transl_table=14). 12. [**Blepharisma Nuclear**] Blepharisma Nuclear code. (Genebank transl_table=15). 13. [**Chlorophycean mtDNA**] Chlorophycean Mitochondrial Code (transl_table=16). 14. [**Trematode mtDNA**] Trematode Mitochondrial Code (transl_table=21). 15. [**Scenedesmus obliquus mtDNA**] Scenedesmus obliquus mitochondrial Code (transl_table=22). 16. [**Thraustochytrium mtDNA**] Thraustochytrium Mitochondrial Code (transl_table=23). 17. [**Pterobranchia mtDNA**] Pterobranchia Mitochondrial Code (transl_table=24). 18. [**SR1 and Gracilibacteria**] Candidate Division SR1 and Gracilibacteria Code (transl_table=25). 19. [**Pachysolen Nuclear**] Pachysolen tannophilus Nuclear Code (transl_table=26). >Please choose an option (or press q to cancel selection): >Select a coding sequence alignment file (`/usr/local/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/`) >A tree was found in the data file: `(C52,(C58,C63,C57,C64,C53),((((((((C67,(C12,C68,C48),C44,C89,C47,C50,C86,C49,C46),((C10,(((C70,C32,C33),((C26,C27,C29),C25)),C14)),(((((((((((C17,C20,C78,C23,C19,C13,C24,C16,C21,C18),C22),(C76,(C74,C72)),C75,C77,((C85,C43),((C6,C5),C9,C11,C7,C8)),(C84,C83),C30,C34,(C35,C37),(C82,C81)),((C79,C80),C73)),C71),(C28,C3)),C2),C1),C15),C4),C87)),C92),(C69,C88,C40,C31,C91)),(C39,C45)),C38),(C42,C41)),(C66,C59,C60),C56),C55,C61,C54,(C62,C51),C65))` >Would you like to use it (y/n)? >Loaded a multiple sequence alignment with **90** sequences, **251** codons, and **1** partitions from `/data//pss_subsets/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1.fna` > FUBAR will write cache and result files to _/data//pss_subsets/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1.fna.FUBAR.cache_ and _/data//pss_subsets/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1.fna.FUBAR.json_, respectively > Number of grid points per dimension (total number is D^2) (permissible range = [5,50], default value = 20, integer): ####Posterior estimation method 1. [**Metropolis-Hastings**] Full Metropolis-Hastings MCMC algorithm (slowest, original 2013 paper implementation) 2. [**Collapsed Gibbs**] Collapsed Gibbs sampler (intermediate speed) 3. [**Variational Bayes**] 0-th order Variational Bayes approximations (fastest, recommended default) >Please choose an option (or press q to cancel selection):> The concentration parameter of the Dirichlet prior (permissible range = [0.001,1], default value = 0.5): ### Obtaining branch lengths and nucleotide substitution biases under the nucleotide GTR model * Log(L) = -4619.07, AIC-c = 9524.76 (143 estimated parameters) * Tree length (expected substitutions/site) for partition 1 : 0.904 ### Computing the phylogenetic likelihood function on the grid * Determining appropriate tree scaling based on the best score from a 20 x 20 rate grid * Best scaling achieved for * synonymous rate = 2.815 * non-synonymous rate = 0.571 * Computing conditional site likelihoods on a 20 x 20 rate grid ### Running an iterative zeroth order variational Bayes procedure to estimate the posterior mean of rate weights * Using the following settings * Dirichlet alpha : 0.5 ### Tabulating site-level results | Codon | Partition | alpha | beta |Posterior prob for positive selection| |:--------------:|:--------------:|:--------------:|:--------------:|:-----------------------------------:| | 20 | 1 | 0.923 | 4.707 | Pos. posterior = 0.9228 | | 181 | 1 | 0.322 | 1.103 | Pos. posterior = 0.9092 | | 240 | 1 | 0.310 | 1.109 | Pos. posterior = 0.9156 | ---- ## FUBAR inferred 3 sites subject to diversifying positive selection at posterior probability >= 0.9 Of these, 0.25 are expected to be false positives (95% confidence interval of 0-1 )
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
