--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1338.58 -1370.58
2 -1341.67 -1373.90
--------------------------------------
TOTAL -1339.23 -1373.24
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.430260 0.030464 1.100222 1.769659 1.413697 1253.24 1317.29 1.000
r(A<->C){all} 0.082298 0.000688 0.035784 0.134966 0.079780 686.69 758.54 1.001
r(A<->G){all} 0.212450 0.001436 0.141421 0.286823 0.211054 650.74 707.80 1.000
r(A<->T){all} 0.082534 0.000382 0.047007 0.122275 0.081177 863.56 943.95 1.000
r(C<->G){all} 0.091271 0.000918 0.037808 0.153379 0.088679 700.57 712.37 1.001
r(C<->T){all} 0.448371 0.002319 0.357866 0.542564 0.447596 690.24 720.56 1.003
r(G<->T){all} 0.083077 0.000472 0.042816 0.124467 0.081067 785.73 802.57 1.000
pi(A){all} 0.274098 0.000628 0.228468 0.327184 0.274082 1037.70 1070.54 1.002
pi(C){all} 0.172945 0.000408 0.134305 0.213147 0.171826 903.76 932.21 1.000
pi(G){all} 0.210634 0.000509 0.167689 0.255441 0.209955 856.09 926.37 1.000
pi(T){all} 0.342324 0.000670 0.292673 0.394032 0.341782 879.98 990.72 1.001
alpha{1,2} 0.840545 0.176789 0.364134 1.610549 0.736521 1072.92 1090.66 1.000
alpha{3} 1.947673 0.651975 0.789721 3.606293 1.767701 1423.45 1431.74 1.000
pinvar{all} 0.085627 0.004293 0.000025 0.214208 0.072480 1078.53 1111.34 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
-- Starting log on Wed Nov 09 22:46:53 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Wed Nov 09 22:49:12 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Wed Nov 09 22:46:53 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Thu Nov 10 05:45:59 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result/gapped_alignment/fubar,A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 90 taxa and 255 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C52
Taxon 2 -> C67
Taxon 3 -> C66
Taxon 4 -> C11
Taxon 5 -> C13
Taxon 6 -> C69
Taxon 7 -> C70
Taxon 8 -> C68
Taxon 9 -> C16
Taxon 10 -> C75
Taxon 11 -> C19
Taxon 12 -> C59
Taxon 13 -> C18
Taxon 14 -> C20
Taxon 15 -> C77
Taxon 16 -> C78
Taxon 17 -> C24
Taxon 18 -> C22
Taxon 19 -> C25
Taxon 20 -> C84
Taxon 21 -> C83
Taxon 22 -> C29
Taxon 23 -> C58
Taxon 24 -> C27
Taxon 25 -> C86
Taxon 26 -> C87
Taxon 27 -> C85
Taxon 28 -> C34
Taxon 29 -> C31
Taxon 30 -> C93
Taxon 31 -> C92
Taxon 32 -> C37
Taxon 33 -> C39
Taxon 34 -> C3
Taxon 35 -> C95
Taxon 36 -> C96
Taxon 37 -> C94
Taxon 38 -> C43
Taxon 39 -> C40
Taxon 40 -> C102
Taxon 41 -> C101
Taxon 42 -> C47
Taxon 43 -> C45
Taxon 44 -> C104
Taxon 45 -> C60
Taxon 46 -> C50
Taxon 47 -> C1
Taxon 48 -> C49
Taxon 49 -> C51
Taxon 50 -> C9
Taxon 51 -> C56
Taxon 52 -> C62
Taxon 53 -> C79
Taxon 54 -> C98
Taxon 55 -> C38
Taxon 56 -> C61
Taxon 57 -> C15
Taxon 58 -> C6
Taxon 59 -> C14
Taxon 60 -> C72
Taxon 61 -> C90
Taxon 62 -> C63
Taxon 63 -> C82
Taxon 64 -> C73
Taxon 65 -> C76
Taxon 66 -> C88
Taxon 67 -> C7
Taxon 68 -> C46
Taxon 69 -> C57
Taxon 70 -> C91
Taxon 71 -> C2
Taxon 72 -> C28
Taxon 73 -> C48
Taxon 74 -> C97
Taxon 75 -> C32
Taxon 76 -> C23
Taxon 77 -> C100
Taxon 78 -> C5
Taxon 79 -> C54
Taxon 80 -> C55
Taxon 81 -> C30
Taxon 82 -> C65
Taxon 83 -> C35
Taxon 84 -> C41
Taxon 85 -> C53
Taxon 86 -> C4
Taxon 87 -> C36
Taxon 88 -> C74
Taxon 89 -> C8
Taxon 90 -> C71
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1668059161
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 2000756051
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 8572060077
Seed = 1962782841
Swapseed = 1668059161
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 51 unique site patterns
Division 2 has 55 unique site patterns
Division 3 has 72 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -10911.373412 -- 149.597508
Chain 2 -- -10039.185099 -- 149.597508
Chain 3 -- -9730.881900 -- 149.597508
Chain 4 -- -10715.068213 -- 149.597508
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -11066.444848 -- 149.597508
Chain 2 -- -10602.565882 -- 149.597508
Chain 3 -- -10032.559071 -- 149.597508
Chain 4 -- -11202.937471 -- 149.597508
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-10911.373] (-10039.185) (-9730.882) (-10715.068) * [-11066.445] (-10602.566) (-10032.559) (-11202.937)
1000 -- (-5256.118) [-5066.583] (-5062.638) (-5745.642) * (-5660.252) (-5067.086) [-4924.544] (-5440.464) -- 0:49:57
2000 -- (-3480.586) (-3644.427) (-4128.296) [-3272.090] * (-4093.199) [-3427.273] (-3470.815) (-3743.224) -- 0:49:54
3000 -- (-2998.355) (-3117.266) (-3055.347) [-2951.475] * (-2737.818) [-2660.173] (-2936.087) (-3195.447) -- 0:49:51
4000 -- (-2790.454) (-2768.167) (-2713.212) [-2433.580] * (-2542.427) [-2532.755] (-2502.692) (-2988.607) -- 0:49:48
5000 -- (-2705.535) (-2486.402) (-2521.999) [-2329.672] * (-2422.608) (-2473.521) [-2375.109] (-2704.948) -- 0:49:45
Average standard deviation of split frequencies: 0.097054
6000 -- (-2547.018) (-2354.568) (-2484.475) [-2276.862] * (-2333.035) [-2303.129] (-2325.932) (-2566.808) -- 0:49:42
7000 -- (-2344.213) (-2308.224) (-2387.615) [-2273.354] * (-2293.877) (-2258.604) [-2267.683] (-2443.829) -- 0:49:39
8000 -- (-2303.270) (-2298.669) (-2370.873) [-2244.796] * (-2274.323) (-2235.688) [-2254.184] (-2404.509) -- 0:49:36
9000 -- (-2297.431) (-2266.427) (-2372.387) [-2238.391] * (-2256.749) [-2216.220] (-2239.735) (-2355.140) -- 0:51:23
10000 -- (-2259.712) (-2292.359) (-2369.039) [-2227.837] * (-2253.868) (-2237.208) [-2226.134] (-2358.423) -- 0:51:09
Average standard deviation of split frequencies: 0.113812
11000 -- (-2235.505) (-2249.265) (-2357.190) [-2244.907] * (-2232.304) [-2208.249] (-2239.165) (-2365.789) -- 0:50:56
12000 -- (-2227.137) [-2209.903] (-2313.825) (-2227.083) * (-2248.094) [-2222.163] (-2234.671) (-2351.662) -- 0:50:46
13000 -- (-2243.394) [-2201.305] (-2272.805) (-2259.038) * (-2253.561) (-2242.712) [-2238.874] (-2385.239) -- 0:51:52
14000 -- (-2246.534) [-2221.207] (-2291.791) (-2259.828) * (-2234.166) (-2249.988) [-2227.153] (-2366.809) -- 0:51:38
15000 -- (-2256.767) [-2198.865] (-2284.919) (-2252.108) * (-2250.425) (-2227.380) [-2221.175] (-2371.900) -- 0:51:26
Average standard deviation of split frequencies: 0.108903
16000 -- (-2246.296) [-2207.980] (-2314.149) (-2222.227) * (-2239.802) (-2229.994) [-2230.254] (-2361.531) -- 0:52:16
17000 -- (-2227.090) [-2209.919] (-2322.569) (-2225.992) * (-2227.212) (-2245.418) [-2209.489] (-2393.938) -- 0:52:02
18000 -- (-2217.547) [-2211.690] (-2351.423) (-2239.599) * (-2240.843) (-2228.621) [-2207.291] (-2366.922) -- 0:51:49
19000 -- (-2224.682) [-2201.762] (-2360.082) (-2237.557) * (-2256.553) (-2210.886) [-2195.480] (-2371.562) -- 0:52:29
20000 -- (-2211.908) [-2201.560] (-2350.979) (-2250.798) * (-2240.788) [-2198.298] (-2215.664) (-2370.856) -- 0:52:16
Average standard deviation of split frequencies: 0.104964
21000 -- [-2203.532] (-2234.500) (-2356.954) (-2245.425) * (-2223.464) [-2208.204] (-2232.073) (-2386.601) -- 0:52:03
22000 -- [-2205.828] (-2216.917) (-2377.601) (-2222.530) * (-2241.497) [-2214.885] (-2210.797) (-2369.107) -- 0:52:36
23000 -- [-2206.315] (-2216.700) (-2382.200) (-2227.322) * (-2257.191) [-2213.156] (-2226.074) (-2387.032) -- 0:52:23
24000 -- [-2207.354] (-2209.249) (-2368.866) (-2220.767) * (-2233.950) [-2225.498] (-2251.778) (-2371.404) -- 0:52:52
25000 -- (-2221.658) [-2220.412] (-2368.273) (-2227.063) * (-2240.472) [-2230.314] (-2254.792) (-2384.336) -- 0:52:39
Average standard deviation of split frequencies: 0.081558
26000 -- [-2219.538] (-2248.883) (-2364.468) (-2229.801) * (-2227.411) [-2234.045] (-2252.952) (-2363.844) -- 0:53:04
27000 -- [-2214.528] (-2217.790) (-2375.414) (-2224.006) * (-2245.518) [-2218.022] (-2251.730) (-2357.462) -- 0:52:51
28000 -- [-2207.546] (-2218.358) (-2380.328) (-2237.400) * [-2234.140] (-2227.343) (-2261.916) (-2375.203) -- 0:53:13
29000 -- [-2221.050] (-2209.025) (-2396.666) (-2239.862) * (-2227.241) [-2208.918] (-2229.203) (-2393.692) -- 0:53:00
30000 -- [-2224.022] (-2236.685) (-2397.482) (-2237.396) * (-2236.446) [-2188.372] (-2254.723) (-2415.662) -- 0:53:21
Average standard deviation of split frequencies: 0.077767
31000 -- [-2216.905] (-2250.686) (-2415.878) (-2228.628) * (-2265.282) [-2201.419] (-2247.047) (-2393.382) -- 0:53:08
32000 -- (-2217.845) (-2268.962) (-2410.640) [-2219.277] * (-2225.007) [-2207.748] (-2246.098) (-2398.263) -- 0:53:26
33000 -- (-2212.910) (-2245.707) (-2420.717) [-2227.584] * (-2246.275) [-2211.478] (-2232.485) (-2383.358) -- 0:53:14
34000 -- [-2213.891] (-2258.578) (-2384.782) (-2215.104) * (-2231.498) [-2206.431] (-2240.907) (-2394.473) -- 0:53:30
35000 -- (-2214.240) (-2250.064) (-2375.827) [-2211.360] * (-2233.454) [-2219.566] (-2244.474) (-2372.467) -- 0:53:18
Average standard deviation of split frequencies: 0.076494
36000 -- [-2227.934] (-2231.036) (-2382.843) (-2206.615) * [-2226.487] (-2227.984) (-2221.749) (-2377.486) -- 0:53:33
37000 -- [-2217.958] (-2242.984) (-2375.112) (-2210.716) * [-2222.974] (-2217.315) (-2286.218) (-2380.189) -- 0:53:21
38000 -- (-2233.497) (-2220.893) (-2376.156) [-2186.530] * (-2238.188) [-2219.465] (-2259.125) (-2389.149) -- 0:53:35
39000 -- (-2233.672) (-2227.741) (-2362.061) [-2202.817] * [-2218.556] (-2230.184) (-2221.589) (-2372.508) -- 0:53:23
40000 -- (-2227.498) (-2257.250) (-2348.351) [-2200.391] * [-2218.713] (-2217.082) (-2239.832) (-2375.892) -- 0:53:36
Average standard deviation of split frequencies: 0.074057
41000 -- [-2214.943] (-2245.895) (-2376.382) (-2227.562) * [-2225.151] (-2231.428) (-2247.277) (-2378.579) -- 0:53:24
42000 -- [-2202.360] (-2243.484) (-2378.723) (-2252.755) * [-2225.868] (-2232.897) (-2245.508) (-2355.959) -- 0:53:13
43000 -- [-2220.941] (-2236.825) (-2376.061) (-2243.905) * [-2216.610] (-2247.610) (-2226.852) (-2376.215) -- 0:53:24
44000 -- [-2217.470] (-2232.669) (-2374.632) (-2241.897) * [-2221.928] (-2251.682) (-2225.413) (-2363.326) -- 0:53:13
45000 -- [-2208.952] (-2226.259) (-2387.761) (-2225.189) * [-2228.993] (-2231.199) (-2222.890) (-2373.186) -- 0:53:24
Average standard deviation of split frequencies: 0.070897
46000 -- [-2211.800] (-2226.461) (-2402.297) (-2233.777) * (-2234.701) (-2245.870) [-2237.541] (-2356.054) -- 0:53:13
47000 -- [-2209.925] (-2237.241) (-2373.343) (-2225.692) * [-2227.014] (-2232.052) (-2234.225) (-2387.763) -- 0:53:03
48000 -- [-2203.378] (-2261.652) (-2377.992) (-2232.178) * [-2215.354] (-2217.271) (-2233.536) (-2352.924) -- 0:53:13
49000 -- (-2209.072) [-2237.230] (-2392.187) (-2260.912) * (-2232.670) [-2228.063] (-2259.093) (-2362.030) -- 0:53:02
50000 -- [-2210.383] (-2224.306) (-2393.194) (-2231.068) * (-2228.914) [-2212.499] (-2259.355) (-2363.186) -- 0:53:12
Average standard deviation of split frequencies: 0.073279
51000 -- [-2208.167] (-2266.892) (-2360.530) (-2204.898) * (-2225.996) [-2219.934] (-2265.731) (-2382.946) -- 0:53:01
52000 -- [-2222.842] (-2231.787) (-2387.720) (-2246.737) * [-2216.921] (-2217.221) (-2276.813) (-2356.909) -- 0:53:10
53000 -- [-2198.701] (-2240.458) (-2397.958) (-2257.016) * [-2215.018] (-2249.146) (-2226.889) (-2362.406) -- 0:53:00
54000 -- [-2206.007] (-2230.789) (-2396.373) (-2226.485) * [-2216.620] (-2245.157) (-2230.224) (-2384.283) -- 0:53:08
55000 -- [-2201.654] (-2237.791) (-2385.948) (-2220.261) * [-2218.293] (-2235.777) (-2244.896) (-2385.050) -- 0:52:58
Average standard deviation of split frequencies: 0.074518
56000 -- [-2189.365] (-2233.627) (-2370.907) (-2227.125) * [-2201.032] (-2249.152) (-2225.026) (-2370.190) -- 0:53:06
57000 -- [-2197.015] (-2236.719) (-2369.565) (-2221.263) * [-2223.023] (-2239.827) (-2222.607) (-2386.335) -- 0:52:56
58000 -- [-2207.874] (-2254.278) (-2382.202) (-2217.458) * [-2216.736] (-2227.650) (-2220.726) (-2389.428) -- 0:53:03
59000 -- [-2199.367] (-2262.248) (-2354.947) (-2228.971) * (-2223.287) [-2221.300] (-2222.932) (-2372.520) -- 0:52:53
60000 -- [-2213.761] (-2226.298) (-2379.976) (-2230.868) * (-2230.638) [-2221.497] (-2247.209) (-2357.413) -- 0:52:44
Average standard deviation of split frequencies: 0.079321
61000 -- [-2207.222] (-2229.787) (-2388.856) (-2242.398) * [-2206.628] (-2232.888) (-2227.772) (-2372.568) -- 0:52:51
62000 -- [-2206.673] (-2228.474) (-2369.802) (-2250.581) * [-2212.237] (-2227.095) (-2213.052) (-2369.389) -- 0:52:57
63000 -- [-2204.416] (-2228.914) (-2385.598) (-2250.501) * [-2216.928] (-2213.231) (-2236.860) (-2377.006) -- 0:52:47
64000 -- [-2209.695] (-2228.372) (-2387.034) (-2263.284) * (-2206.822) [-2195.542] (-2227.864) (-2388.236) -- 0:52:53
65000 -- [-2192.688] (-2211.656) (-2373.410) (-2230.858) * [-2214.446] (-2188.050) (-2230.511) (-2365.865) -- 0:52:44
Average standard deviation of split frequencies: 0.075472
66000 -- (-2198.354) [-2216.008] (-2364.009) (-2219.737) * [-2198.689] (-2181.429) (-2254.870) (-2381.466) -- 0:52:49
67000 -- [-2203.335] (-2232.678) (-2369.303) (-2246.162) * [-2196.203] (-2196.795) (-2278.099) (-2397.593) -- 0:52:41
68000 -- [-2227.148] (-2256.145) (-2370.295) (-2222.695) * [-2183.436] (-2206.849) (-2275.355) (-2386.452) -- 0:52:32
69000 -- [-2226.471] (-2234.692) (-2360.632) (-2219.813) * [-2209.204] (-2210.761) (-2267.502) (-2380.537) -- 0:52:37
70000 -- [-2220.170] (-2225.028) (-2368.900) (-2253.795) * (-2215.911) [-2197.710] (-2260.164) (-2372.391) -- 0:52:28
Average standard deviation of split frequencies: 0.076030
71000 -- (-2217.276) [-2235.429] (-2364.787) (-2256.504) * (-2219.022) [-2205.273] (-2250.597) (-2378.219) -- 0:52:33
72000 -- [-2225.918] (-2264.890) (-2371.758) (-2249.905) * (-2230.202) [-2201.423] (-2250.069) (-2386.668) -- 0:52:24
73000 -- [-2212.536] (-2242.359) (-2390.595) (-2237.874) * (-2229.939) [-2204.630] (-2240.863) (-2393.444) -- 0:52:16
74000 -- [-2214.155] (-2242.253) (-2385.906) (-2244.351) * [-2206.741] (-2210.827) (-2236.810) (-2405.070) -- 0:52:08
75000 -- [-2214.474] (-2233.439) (-2368.117) (-2245.233) * (-2237.613) [-2197.302] (-2250.367) (-2404.287) -- 0:52:12
Average standard deviation of split frequencies: 0.075155
76000 -- [-2213.870] (-2230.101) (-2399.570) (-2239.223) * [-2225.124] (-2234.592) (-2246.374) (-2384.261) -- 0:52:04
77000 -- [-2213.293] (-2211.788) (-2397.660) (-2229.860) * [-2214.655] (-2232.940) (-2267.694) (-2398.888) -- 0:51:56
78000 -- [-2204.331] (-2213.615) (-2375.493) (-2257.079) * (-2217.836) [-2212.013] (-2274.367) (-2383.594) -- 0:52:00
79000 -- [-2212.791] (-2204.703) (-2387.748) (-2252.805) * [-2221.505] (-2231.013) (-2260.989) (-2380.685) -- 0:51:52
80000 -- (-2219.899) [-2208.091] (-2382.042) (-2269.927) * (-2229.947) [-2213.718] (-2261.078) (-2381.877) -- 0:51:45
Average standard deviation of split frequencies: 0.074973
81000 -- [-2210.735] (-2225.737) (-2389.274) (-2262.906) * [-2213.347] (-2223.272) (-2256.159) (-2389.460) -- 0:51:48
82000 -- [-2204.745] (-2220.475) (-2376.516) (-2260.218) * [-2195.928] (-2234.623) (-2250.400) (-2357.853) -- 0:51:41
83000 -- [-2211.735] (-2242.049) (-2387.708) (-2249.464) * [-2195.781] (-2224.117) (-2261.698) (-2357.522) -- 0:51:44
84000 -- [-2216.279] (-2236.182) (-2397.267) (-2234.086) * [-2202.657] (-2229.196) (-2232.652) (-2407.572) -- 0:51:36
85000 -- [-2206.224] (-2242.296) (-2388.392) (-2206.907) * [-2204.338] (-2237.913) (-2213.220) (-2392.066) -- 0:51:40
Average standard deviation of split frequencies: 0.070119
86000 -- [-2223.166] (-2245.344) (-2374.706) (-2223.380) * [-2211.702] (-2230.782) (-2215.202) (-2395.897) -- 0:51:43
87000 -- [-2228.306] (-2246.752) (-2374.167) (-2208.620) * [-2226.489] (-2233.327) (-2206.544) (-2382.970) -- 0:51:35
88000 -- [-2214.626] (-2238.266) (-2388.318) (-2222.224) * [-2217.845] (-2225.512) (-2225.743) (-2382.998) -- 0:51:28
89000 -- [-2235.527] (-2269.953) (-2386.549) (-2221.608) * [-2220.587] (-2230.802) (-2237.061) (-2377.131) -- 0:51:31
90000 -- (-2258.848) (-2243.404) (-2372.279) [-2206.171] * [-2225.911] (-2228.060) (-2242.760) (-2399.171) -- 0:51:23
Average standard deviation of split frequencies: 0.069434
91000 -- (-2263.122) (-2247.747) (-2353.198) [-2204.472] * (-2228.879) (-2235.895) [-2226.856] (-2368.347) -- 0:51:26
92000 -- (-2272.992) (-2221.678) (-2355.135) [-2225.203] * (-2234.027) (-2233.612) [-2243.422] (-2375.850) -- 0:51:19
93000 -- (-2251.792) [-2232.600] (-2362.590) (-2220.425) * (-2265.733) [-2211.155] (-2227.868) (-2401.569) -- 0:51:21
94000 -- (-2225.534) [-2204.168] (-2380.434) (-2223.028) * (-2246.007) [-2217.171] (-2224.322) (-2392.695) -- 0:51:14
95000 -- (-2241.005) [-2210.553] (-2364.214) (-2250.341) * (-2259.254) [-2211.129] (-2236.063) (-2371.907) -- 0:51:17
Average standard deviation of split frequencies: 0.067330
96000 -- (-2236.085) [-2227.806] (-2387.264) (-2236.505) * (-2284.894) [-2197.179] (-2225.165) (-2372.782) -- 0:51:09
97000 -- (-2226.168) [-2221.323] (-2388.681) (-2230.595) * (-2262.370) (-2219.272) [-2221.038] (-2375.501) -- 0:51:02
98000 -- (-2228.796) [-2222.279] (-2384.089) (-2233.126) * (-2292.581) (-2223.060) [-2224.131] (-2372.859) -- 0:51:04
99000 -- (-2240.147) [-2207.821] (-2395.410) (-2245.991) * (-2241.420) (-2241.418) [-2210.546] (-2383.787) -- 0:50:57
100000 -- [-2193.552] (-2215.823) (-2376.408) (-2251.859) * (-2250.971) (-2244.630) [-2236.338] (-2403.671) -- 0:51:00
Average standard deviation of split frequencies: 0.065374
101000 -- (-2207.904) [-2228.387] (-2368.993) (-2239.627) * (-2267.679) [-2228.002] (-2230.974) (-2383.007) -- 0:51:01
102000 -- [-2216.878] (-2222.636) (-2376.776) (-2233.452) * (-2262.308) [-2227.448] (-2227.971) (-2363.318) -- 0:50:54
103000 -- [-2205.718] (-2223.735) (-2368.202) (-2262.725) * (-2243.870) (-2227.111) [-2211.123] (-2395.026) -- 0:50:56
104000 -- [-2203.561] (-2217.524) (-2370.710) (-2242.514) * (-2248.671) (-2218.656) [-2214.632] (-2402.555) -- 0:50:49
105000 -- [-2209.828] (-2231.456) (-2381.831) (-2229.336) * (-2256.786) (-2216.380) [-2204.461] (-2365.628) -- 0:50:43
Average standard deviation of split frequencies: 0.061692
106000 -- (-2224.856) [-2211.404] (-2370.936) (-2251.764) * [-2237.966] (-2230.259) (-2226.666) (-2361.418) -- 0:50:44
107000 -- [-2223.621] (-2221.337) (-2371.912) (-2242.875) * [-2227.130] (-2252.522) (-2243.400) (-2356.257) -- 0:50:37
108000 -- (-2207.769) [-2192.077] (-2375.836) (-2237.015) * [-2216.853] (-2223.781) (-2236.317) (-2380.453) -- 0:50:39
109000 -- [-2202.148] (-2224.408) (-2384.677) (-2245.004) * (-2233.737) [-2190.773] (-2244.263) (-2381.792) -- 0:50:40
110000 -- [-2207.524] (-2223.757) (-2397.861) (-2230.055) * (-2245.587) [-2206.919] (-2240.223) (-2385.794) -- 0:50:34
Average standard deviation of split frequencies: 0.061431
111000 -- [-2214.916] (-2226.452) (-2363.940) (-2245.777) * (-2245.525) [-2226.881] (-2246.122) (-2405.371) -- 0:50:27
112000 -- [-2213.087] (-2235.451) (-2366.380) (-2260.669) * (-2224.280) [-2229.938] (-2256.289) (-2400.598) -- 0:50:28
113000 -- [-2207.918] (-2256.427) (-2381.403) (-2236.116) * [-2216.056] (-2225.231) (-2240.564) (-2416.961) -- 0:50:22
114000 -- [-2200.956] (-2242.281) (-2377.120) (-2230.478) * [-2226.115] (-2237.619) (-2229.645) (-2398.252) -- 0:50:15
115000 -- [-2205.728] (-2249.026) (-2352.576) (-2229.591) * [-2208.687] (-2215.322) (-2230.497) (-2397.802) -- 0:50:09
Average standard deviation of split frequencies: 0.060791
116000 -- [-2200.390] (-2236.893) (-2361.032) (-2232.129) * [-2232.558] (-2230.425) (-2248.773) (-2379.438) -- 0:50:10
117000 -- [-2197.605] (-2214.069) (-2361.363) (-2223.007) * (-2235.739) [-2230.092] (-2239.240) (-2382.234) -- 0:50:03
118000 -- [-2209.216] (-2222.288) (-2370.823) (-2240.522) * [-2222.687] (-2228.657) (-2251.985) (-2384.041) -- 0:49:57
119000 -- [-2209.108] (-2230.994) (-2364.307) (-2218.142) * [-2213.435] (-2220.300) (-2247.066) (-2369.913) -- 0:49:58
120000 -- [-2229.417] (-2236.047) (-2354.754) (-2243.413) * [-2221.934] (-2217.388) (-2229.534) (-2365.109) -- 0:49:52
Average standard deviation of split frequencies: 0.058723
121000 -- [-2191.561] (-2226.883) (-2360.943) (-2232.455) * [-2217.171] (-2214.596) (-2245.440) (-2370.192) -- 0:49:45
122000 -- [-2191.857] (-2253.571) (-2374.081) (-2221.721) * (-2232.751) [-2201.101] (-2239.877) (-2352.709) -- 0:49:46
123000 -- [-2201.664] (-2229.539) (-2355.487) (-2225.968) * (-2244.844) [-2219.156] (-2234.696) (-2356.757) -- 0:49:40
124000 -- [-2185.370] (-2232.309) (-2359.900) (-2250.041) * (-2235.380) [-2219.609] (-2230.853) (-2373.395) -- 0:49:34
125000 -- [-2192.923] (-2239.334) (-2369.550) (-2258.478) * (-2228.937) [-2209.932] (-2258.454) (-2378.850) -- 0:49:35
Average standard deviation of split frequencies: 0.056217
126000 -- (-2203.725) [-2218.667] (-2371.627) (-2248.887) * (-2236.430) [-2198.237] (-2272.072) (-2383.436) -- 0:49:28
127000 -- [-2197.618] (-2218.918) (-2385.588) (-2265.895) * (-2232.605) [-2199.058] (-2254.688) (-2390.552) -- 0:49:22
128000 -- [-2203.484] (-2225.243) (-2375.781) (-2245.270) * (-2237.938) [-2196.965] (-2248.141) (-2390.918) -- 0:49:23
129000 -- [-2198.541] (-2227.826) (-2378.578) (-2236.648) * (-2271.687) [-2209.900] (-2249.203) (-2376.910) -- 0:49:17
130000 -- [-2213.835] (-2215.696) (-2367.195) (-2243.460) * (-2250.225) [-2196.094] (-2245.892) (-2393.132) -- 0:49:11
Average standard deviation of split frequencies: 0.053909
131000 -- (-2230.264) [-2212.268] (-2364.695) (-2235.215) * (-2254.094) [-2203.854] (-2248.948) (-2353.491) -- 0:49:05
132000 -- (-2214.078) [-2210.133] (-2380.665) (-2224.484) * (-2243.377) [-2204.714] (-2259.522) (-2345.763) -- 0:49:05
133000 -- (-2242.808) [-2213.701] (-2352.250) (-2241.801) * (-2221.335) [-2224.041] (-2228.943) (-2358.229) -- 0:48:59
134000 -- (-2232.001) [-2218.566] (-2387.173) (-2250.379) * (-2222.334) [-2233.621] (-2223.446) (-2374.129) -- 0:48:54
135000 -- (-2250.648) [-2209.461] (-2372.114) (-2243.941) * [-2212.375] (-2243.594) (-2217.922) (-2359.508) -- 0:48:48
Average standard deviation of split frequencies: 0.050925
136000 -- (-2227.059) [-2182.043] (-2357.097) (-2267.414) * [-2226.627] (-2236.573) (-2223.879) (-2382.300) -- 0:48:48
137000 -- (-2227.042) [-2199.308] (-2363.767) (-2250.762) * [-2227.776] (-2235.497) (-2204.086) (-2378.455) -- 0:48:42
138000 -- (-2228.412) [-2205.505] (-2365.919) (-2250.020) * [-2214.614] (-2243.661) (-2195.824) (-2367.689) -- 0:48:43
139000 -- (-2222.698) [-2202.260] (-2366.146) (-2245.911) * (-2213.929) (-2242.084) [-2211.019] (-2383.155) -- 0:48:37
140000 -- [-2214.678] (-2214.996) (-2382.110) (-2251.731) * (-2215.576) (-2281.188) [-2209.532] (-2367.294) -- 0:48:37
Average standard deviation of split frequencies: 0.049569
141000 -- (-2253.095) [-2209.880] (-2366.575) (-2238.231) * (-2219.814) (-2243.946) [-2202.775] (-2361.786) -- 0:48:32
142000 -- (-2230.929) [-2207.235] (-2368.421) (-2223.253) * (-2222.091) (-2249.350) [-2216.181] (-2389.486) -- 0:48:32
143000 -- (-2241.975) [-2214.397] (-2378.124) (-2228.286) * (-2234.325) (-2262.445) [-2220.245] (-2378.767) -- 0:48:32
144000 -- (-2231.796) [-2191.972] (-2373.561) (-2261.582) * [-2240.074] (-2244.097) (-2233.802) (-2347.378) -- 0:48:26
145000 -- (-2224.001) [-2196.305] (-2388.553) (-2233.034) * [-2230.969] (-2239.739) (-2221.442) (-2358.423) -- 0:48:21
Average standard deviation of split frequencies: 0.050545
146000 -- (-2227.674) [-2202.723] (-2379.136) (-2237.317) * (-2230.167) (-2236.414) [-2215.335] (-2337.771) -- 0:48:21
147000 -- (-2234.609) [-2199.743] (-2369.917) (-2249.145) * (-2228.331) (-2249.769) [-2217.101] (-2375.629) -- 0:48:15
148000 -- (-2224.194) [-2192.570] (-2388.706) (-2254.634) * [-2204.604] (-2243.282) (-2224.969) (-2386.878) -- 0:48:15
149000 -- (-2220.158) [-2192.771] (-2379.297) (-2241.386) * [-2221.409] (-2269.204) (-2226.238) (-2400.452) -- 0:48:09
150000 -- (-2227.107) [-2195.198] (-2381.780) (-2226.878) * [-2207.784] (-2264.607) (-2228.968) (-2397.501) -- 0:48:04
Average standard deviation of split frequencies: 0.049943
151000 -- (-2227.356) [-2199.449] (-2381.123) (-2243.122) * (-2206.922) (-2241.206) [-2221.065] (-2407.748) -- 0:48:04
152000 -- [-2236.237] (-2192.075) (-2375.400) (-2259.225) * [-2219.737] (-2250.552) (-2232.801) (-2382.797) -- 0:47:58
153000 -- (-2231.748) [-2205.863] (-2379.539) (-2261.120) * [-2205.972] (-2243.391) (-2235.599) (-2404.165) -- 0:47:53
154000 -- (-2232.844) [-2203.556] (-2362.452) (-2262.596) * [-2204.242] (-2247.156) (-2228.646) (-2387.766) -- 0:47:53
155000 -- (-2246.383) [-2197.738] (-2384.720) (-2240.584) * [-2208.385] (-2263.339) (-2251.129) (-2392.370) -- 0:47:47
Average standard deviation of split frequencies: 0.049614
156000 -- (-2219.182) [-2216.975] (-2382.088) (-2216.949) * [-2204.750] (-2246.724) (-2250.842) (-2389.144) -- 0:47:42
157000 -- (-2239.425) (-2223.354) (-2394.883) [-2213.800] * [-2224.199] (-2244.726) (-2255.407) (-2379.600) -- 0:47:41
158000 -- (-2257.580) (-2218.949) (-2385.611) [-2219.205] * [-2212.313] (-2261.081) (-2248.340) (-2386.227) -- 0:47:36
159000 -- (-2236.557) [-2203.819] (-2394.858) (-2225.810) * [-2207.205] (-2268.441) (-2240.603) (-2388.817) -- 0:47:36
160000 -- (-2248.477) [-2191.028] (-2387.822) (-2235.797) * (-2234.470) (-2272.248) [-2208.108] (-2379.236) -- 0:47:30
Average standard deviation of split frequencies: 0.048166
161000 -- (-2246.696) [-2200.120] (-2392.608) (-2239.369) * (-2229.861) (-2277.756) [-2211.438] (-2398.161) -- 0:47:25
162000 -- (-2253.650) [-2213.301] (-2386.974) (-2242.855) * [-2224.581] (-2255.559) (-2201.505) (-2408.324) -- 0:47:25
163000 -- (-2241.783) [-2226.283] (-2393.226) (-2252.353) * (-2213.318) (-2262.777) [-2194.544] (-2390.678) -- 0:47:19
164000 -- [-2221.783] (-2236.226) (-2380.380) (-2240.335) * [-2214.195] (-2260.603) (-2215.874) (-2394.552) -- 0:47:14
165000 -- [-2215.468] (-2228.218) (-2382.200) (-2234.561) * (-2204.975) (-2260.020) [-2200.423] (-2375.364) -- 0:47:13
Average standard deviation of split frequencies: 0.046965
166000 -- [-2214.901] (-2215.937) (-2362.316) (-2249.269) * (-2217.642) (-2261.928) [-2197.588] (-2371.190) -- 0:47:08
167000 -- [-2208.941] (-2215.012) (-2378.826) (-2222.756) * [-2217.375] (-2254.394) (-2222.685) (-2391.230) -- 0:47:08
168000 -- (-2213.934) [-2220.786] (-2371.097) (-2243.799) * [-2210.233] (-2266.732) (-2228.634) (-2388.645) -- 0:47:02
169000 -- [-2208.222] (-2228.034) (-2382.371) (-2258.637) * [-2216.229] (-2261.517) (-2216.055) (-2391.903) -- 0:46:57
170000 -- [-2231.885] (-2230.721) (-2386.596) (-2249.606) * (-2202.155) (-2262.177) [-2222.144] (-2378.878) -- 0:46:57
Average standard deviation of split frequencies: 0.044073
171000 -- (-2245.015) [-2226.128] (-2352.305) (-2252.133) * [-2194.342] (-2267.854) (-2242.056) (-2343.625) -- 0:46:51
172000 -- [-2222.011] (-2217.465) (-2369.389) (-2269.405) * [-2212.490] (-2257.665) (-2230.941) (-2372.766) -- 0:46:51
173000 -- [-2218.039] (-2240.852) (-2352.504) (-2233.404) * [-2222.496] (-2258.108) (-2239.214) (-2376.506) -- 0:46:46
174000 -- (-2245.122) [-2211.165] (-2368.707) (-2240.058) * [-2220.520] (-2270.035) (-2227.070) (-2377.543) -- 0:46:40
175000 -- (-2253.126) [-2205.481] (-2364.993) (-2234.448) * [-2222.594] (-2258.529) (-2220.709) (-2389.047) -- 0:46:40
Average standard deviation of split frequencies: 0.042855
176000 -- (-2240.370) [-2211.130] (-2343.475) (-2238.244) * (-2235.701) (-2243.101) [-2221.932] (-2381.454) -- 0:46:39
177000 -- (-2236.835) (-2238.560) (-2346.958) [-2212.982] * (-2225.036) (-2265.718) [-2221.382] (-2383.061) -- 0:46:34
178000 -- [-2234.906] (-2250.833) (-2373.413) (-2208.717) * (-2226.717) (-2225.953) [-2222.413] (-2371.669) -- 0:46:29
179000 -- (-2230.369) (-2231.238) (-2356.004) [-2191.828] * (-2249.108) [-2204.000] (-2252.538) (-2370.603) -- 0:46:28
180000 -- (-2214.998) (-2255.532) (-2364.911) [-2201.214] * (-2232.026) [-2207.439] (-2241.610) (-2384.986) -- 0:46:23
Average standard deviation of split frequencies: 0.041570
181000 -- (-2223.454) (-2242.491) (-2384.205) [-2199.636] * (-2213.106) [-2209.051] (-2243.718) (-2375.246) -- 0:46:22
182000 -- (-2215.796) (-2237.526) (-2376.001) [-2200.473] * [-2204.157] (-2227.269) (-2247.241) (-2377.584) -- 0:46:17
183000 -- (-2219.332) (-2255.706) (-2383.102) [-2195.586] * [-2187.231] (-2197.007) (-2242.728) (-2368.773) -- 0:46:16
184000 -- (-2225.882) (-2225.148) (-2381.497) [-2197.468] * (-2205.534) [-2194.602] (-2223.800) (-2373.443) -- 0:46:11
185000 -- (-2211.547) (-2219.112) (-2412.935) [-2205.023] * [-2201.037] (-2210.829) (-2235.644) (-2366.787) -- 0:46:11
Average standard deviation of split frequencies: 0.040523
186000 -- (-2230.076) (-2234.640) (-2392.109) [-2209.088] * (-2234.258) [-2200.802] (-2254.057) (-2367.009) -- 0:46:05
187000 -- (-2227.370) (-2247.654) (-2390.648) [-2209.614] * (-2244.706) [-2208.365] (-2228.816) (-2368.225) -- 0:46:05
188000 -- (-2239.007) (-2257.066) (-2371.815) [-2202.158] * (-2223.207) [-2197.097] (-2235.375) (-2372.995) -- 0:46:04
189000 -- (-2224.320) (-2248.368) (-2377.925) [-2213.318] * (-2226.235) [-2180.549] (-2230.322) (-2370.217) -- 0:45:59
190000 -- [-2221.702] (-2230.584) (-2381.373) (-2241.618) * (-2253.413) [-2189.121] (-2239.980) (-2353.251) -- 0:45:58
Average standard deviation of split frequencies: 0.040583
191000 -- [-2226.276] (-2221.818) (-2376.277) (-2227.605) * (-2236.981) [-2190.030] (-2260.125) (-2355.727) -- 0:45:57
192000 -- (-2209.939) (-2213.357) (-2367.200) [-2228.397] * (-2271.982) [-2200.076] (-2265.453) (-2354.474) -- 0:45:52
193000 -- (-2219.544) (-2218.535) (-2389.643) [-2211.991] * (-2250.157) [-2214.131] (-2225.259) (-2336.552) -- 0:45:51
194000 -- (-2210.775) (-2231.839) (-2383.475) [-2207.971] * (-2268.030) [-2207.510] (-2209.255) (-2353.776) -- 0:45:46
195000 -- (-2227.920) (-2250.208) (-2388.709) [-2213.633] * (-2292.722) [-2230.236] (-2231.400) (-2356.587) -- 0:45:45
Average standard deviation of split frequencies: 0.041048
196000 -- (-2230.595) (-2242.660) (-2399.675) [-2200.538] * (-2300.721) [-2227.183] (-2222.804) (-2352.444) -- 0:45:40
197000 -- (-2252.556) (-2239.140) (-2371.853) [-2214.556] * (-2293.596) [-2223.055] (-2245.095) (-2362.315) -- 0:45:39
198000 -- (-2224.395) (-2240.250) (-2385.381) [-2200.057] * (-2288.719) [-2226.247] (-2222.288) (-2363.339) -- 0:45:34
199000 -- (-2226.919) (-2237.449) (-2398.338) [-2208.894] * (-2265.053) [-2215.162] (-2219.186) (-2361.428) -- 0:45:33
200000 -- (-2211.700) (-2249.425) (-2380.448) [-2214.793] * (-2283.767) [-2216.696] (-2230.316) (-2399.458) -- 0:45:28
Average standard deviation of split frequencies: 0.041601
201000 -- [-2214.646] (-2233.741) (-2386.397) (-2210.153) * (-2257.353) [-2222.689] (-2230.100) (-2418.904) -- 0:45:26
202000 -- [-2203.621] (-2232.402) (-2374.959) (-2211.224) * (-2261.375) (-2230.627) [-2199.753] (-2413.416) -- 0:45:21
203000 -- [-2200.237] (-2203.925) (-2359.717) (-2229.506) * (-2261.299) [-2225.358] (-2223.287) (-2388.264) -- 0:45:20
204000 -- [-2207.998] (-2219.324) (-2371.092) (-2225.352) * (-2252.645) [-2223.181] (-2209.862) (-2375.792) -- 0:45:15
205000 -- (-2236.969) (-2259.836) (-2395.771) [-2206.881] * (-2250.819) (-2232.168) [-2236.403] (-2391.433) -- 0:45:14
Average standard deviation of split frequencies: 0.040983
206000 -- (-2239.772) (-2260.321) (-2400.041) [-2214.265] * (-2240.208) [-2226.049] (-2251.296) (-2391.025) -- 0:45:09
207000 -- (-2248.696) (-2233.712) (-2405.928) [-2210.777] * (-2234.329) [-2234.587] (-2249.382) (-2407.002) -- 0:45:04
208000 -- (-2230.554) (-2245.815) (-2390.629) [-2221.223] * (-2245.568) [-2214.629] (-2251.976) (-2387.042) -- 0:44:59
209000 -- (-2241.710) (-2226.446) (-2382.288) [-2220.762] * (-2227.758) [-2223.384] (-2258.728) (-2381.558) -- 0:44:58
210000 -- (-2250.286) (-2238.856) (-2365.386) [-2232.068] * (-2226.039) [-2221.947] (-2261.958) (-2374.470) -- 0:44:53
Average standard deviation of split frequencies: 0.039236
211000 -- (-2246.989) (-2252.820) (-2377.570) [-2229.189] * (-2225.801) [-2211.984] (-2254.436) (-2362.445) -- 0:44:52
212000 -- (-2242.713) (-2249.819) (-2380.491) [-2229.819] * (-2230.897) [-2199.311] (-2247.115) (-2353.836) -- 0:44:47
213000 -- (-2239.734) (-2270.060) (-2362.065) [-2228.813] * (-2219.599) [-2202.184] (-2246.666) (-2369.456) -- 0:44:46
214000 -- [-2223.472] (-2251.103) (-2362.335) (-2244.737) * (-2251.721) [-2181.932] (-2233.683) (-2379.610) -- 0:44:41
215000 -- [-2210.688] (-2258.032) (-2355.916) (-2237.181) * (-2234.707) [-2186.223] (-2236.430) (-2380.232) -- 0:44:36
Average standard deviation of split frequencies: 0.037399
216000 -- [-2205.871] (-2264.595) (-2355.191) (-2221.024) * (-2237.588) [-2210.414] (-2249.081) (-2379.706) -- 0:44:35
217000 -- [-2215.693] (-2244.088) (-2360.825) (-2223.039) * (-2250.042) [-2219.297] (-2237.744) (-2399.003) -- 0:44:30
218000 -- [-2212.558] (-2243.863) (-2380.530) (-2227.019) * (-2249.203) [-2227.535] (-2242.886) (-2403.683) -- 0:44:28
219000 -- [-2195.357] (-2254.604) (-2351.033) (-2229.511) * (-2247.866) [-2215.146] (-2244.423) (-2387.579) -- 0:44:23
220000 -- [-2199.306] (-2252.217) (-2369.854) (-2240.880) * (-2242.646) [-2221.089] (-2238.914) (-2392.877) -- 0:44:19
Average standard deviation of split frequencies: 0.035286
221000 -- [-2197.516] (-2235.960) (-2368.693) (-2250.688) * (-2227.633) [-2206.879] (-2232.600) (-2388.076) -- 0:44:17
222000 -- [-2193.502] (-2233.991) (-2350.277) (-2252.426) * (-2221.839) [-2205.224] (-2237.392) (-2368.674) -- 0:44:12
223000 -- [-2208.128] (-2235.280) (-2364.676) (-2248.678) * (-2240.042) [-2223.609] (-2221.971) (-2361.971) -- 0:44:11
224000 -- [-2215.283] (-2221.811) (-2349.331) (-2249.909) * (-2249.554) (-2226.395) [-2206.102] (-2373.200) -- 0:44:06
225000 -- [-2205.263] (-2232.593) (-2373.731) (-2255.962) * (-2254.509) (-2217.150) [-2218.560] (-2362.786) -- 0:44:05
Average standard deviation of split frequencies: 0.034387
226000 -- (-2210.463) (-2254.336) (-2354.997) [-2229.545] * (-2240.429) [-2218.082] (-2227.640) (-2363.526) -- 0:44:00
227000 -- (-2200.112) (-2245.874) (-2365.726) [-2224.691] * (-2240.997) (-2233.237) [-2223.295] (-2366.236) -- 0:43:59
228000 -- (-2227.786) (-2232.421) (-2376.037) [-2229.556] * (-2255.055) [-2228.643] (-2248.356) (-2377.169) -- 0:43:54
229000 -- (-2236.484) (-2240.083) (-2382.840) [-2205.791] * (-2233.549) [-2240.689] (-2237.471) (-2392.446) -- 0:43:49
230000 -- (-2217.645) [-2204.789] (-2353.065) (-2208.367) * (-2236.611) [-2229.655] (-2252.489) (-2359.058) -- 0:43:44
Average standard deviation of split frequencies: 0.033121
231000 -- (-2244.811) [-2208.228] (-2350.905) (-2200.096) * [-2216.264] (-2225.799) (-2251.661) (-2382.571) -- 0:43:43
232000 -- (-2243.451) (-2218.008) (-2371.210) [-2211.529] * (-2249.534) [-2214.335] (-2230.166) (-2375.249) -- 0:43:38
233000 -- (-2266.721) (-2228.542) (-2374.122) [-2225.382] * (-2229.400) [-2221.116] (-2239.541) (-2379.723) -- 0:43:37
234000 -- (-2271.844) (-2217.673) (-2356.523) [-2217.187] * (-2241.103) [-2240.829] (-2218.696) (-2370.242) -- 0:43:32
235000 -- (-2239.427) [-2214.649] (-2394.426) (-2234.778) * (-2253.406) [-2232.216] (-2227.216) (-2375.146) -- 0:43:27
Average standard deviation of split frequencies: 0.032170
236000 -- (-2252.296) [-2223.310] (-2390.163) (-2230.485) * (-2261.529) [-2221.210] (-2216.429) (-2369.897) -- 0:43:26
237000 -- (-2237.940) (-2215.363) (-2397.966) [-2217.705] * (-2232.087) [-2219.059] (-2206.913) (-2360.415) -- 0:43:21
238000 -- (-2258.755) [-2207.595] (-2383.904) (-2226.158) * (-2237.758) (-2216.803) [-2224.257] (-2373.793) -- 0:43:19
239000 -- (-2257.481) [-2206.618] (-2356.539) (-2236.079) * (-2223.853) [-2203.025] (-2228.702) (-2374.868) -- 0:43:15
240000 -- (-2271.168) [-2211.521] (-2355.002) (-2238.792) * (-2236.715) (-2227.392) [-2205.657] (-2370.477) -- 0:43:13
Average standard deviation of split frequencies: 0.030661
241000 -- (-2251.840) [-2231.305] (-2351.796) (-2219.705) * (-2262.754) (-2233.090) [-2214.326] (-2378.575) -- 0:43:11
242000 -- (-2233.563) [-2242.371] (-2381.428) (-2253.841) * (-2277.914) [-2228.301] (-2213.205) (-2384.927) -- 0:43:07
243000 -- (-2240.940) [-2206.027] (-2373.311) (-2211.336) * (-2249.122) (-2239.342) [-2192.766] (-2360.965) -- 0:43:05
244000 -- (-2239.455) (-2219.424) (-2360.676) [-2223.184] * (-2251.886) (-2225.190) [-2199.415] (-2361.815) -- 0:43:00
245000 -- (-2274.629) [-2206.815] (-2368.580) (-2234.892) * (-2240.118) (-2229.235) [-2209.415] (-2381.393) -- 0:42:59
Average standard deviation of split frequencies: 0.029369
246000 -- (-2269.867) [-2220.351] (-2378.294) (-2240.113) * (-2250.676) (-2224.276) [-2215.410] (-2380.037) -- 0:42:54
247000 -- (-2243.918) [-2220.006] (-2390.337) (-2247.571) * (-2248.750) [-2222.645] (-2236.322) (-2377.014) -- 0:42:49
248000 -- (-2245.201) [-2203.732] (-2367.068) (-2228.461) * (-2233.458) [-2203.162] (-2222.854) (-2380.890) -- 0:42:48
249000 -- (-2217.195) [-2209.490] (-2367.668) (-2250.273) * (-2228.483) [-2197.419] (-2222.000) (-2382.819) -- 0:42:46
250000 -- [-2216.045] (-2214.375) (-2359.248) (-2257.259) * (-2228.238) [-2207.619] (-2225.362) (-2376.214) -- 0:42:42
Average standard deviation of split frequencies: 0.029081
251000 -- (-2218.359) [-2218.237] (-2358.543) (-2235.383) * (-2218.244) (-2219.710) [-2224.102] (-2402.635) -- 0:42:37
252000 -- (-2213.138) [-2216.680] (-2380.758) (-2242.106) * (-2250.638) [-2219.763] (-2218.487) (-2392.913) -- 0:42:35
253000 -- (-2227.979) [-2199.462] (-2348.098) (-2242.664) * (-2221.960) (-2234.767) [-2206.816] (-2395.204) -- 0:42:31
254000 -- (-2231.838) [-2223.242] (-2361.988) (-2254.234) * (-2228.277) (-2230.974) [-2192.317] (-2375.246) -- 0:42:29
255000 -- [-2224.298] (-2223.475) (-2366.056) (-2265.955) * (-2224.611) (-2254.845) [-2197.322] (-2386.942) -- 0:42:24
Average standard deviation of split frequencies: 0.028647
256000 -- (-2209.911) [-2210.170] (-2380.915) (-2250.957) * (-2227.419) (-2231.923) [-2207.086] (-2383.498) -- 0:42:22
257000 -- (-2220.374) [-2196.943] (-2392.836) (-2246.329) * (-2219.734) (-2257.842) [-2201.790] (-2370.152) -- 0:42:18
258000 -- (-2232.687) [-2207.482] (-2377.283) (-2227.129) * [-2196.752] (-2237.739) (-2202.701) (-2382.383) -- 0:42:16
259000 -- (-2221.975) [-2214.045] (-2377.520) (-2217.684) * [-2203.886] (-2263.962) (-2226.484) (-2364.401) -- 0:42:11
260000 -- (-2226.045) [-2223.446] (-2382.073) (-2244.122) * [-2204.142] (-2238.407) (-2221.697) (-2368.602) -- 0:42:07
Average standard deviation of split frequencies: 0.028290
261000 -- (-2229.442) [-2221.294] (-2380.243) (-2261.517) * (-2200.019) (-2242.364) [-2213.048] (-2375.407) -- 0:42:05
262000 -- (-2241.399) [-2205.985] (-2353.747) (-2237.025) * [-2197.696] (-2250.988) (-2245.429) (-2366.017) -- 0:42:01
263000 -- (-2250.851) [-2205.679] (-2349.066) (-2247.356) * [-2204.379] (-2235.969) (-2242.242) (-2372.726) -- 0:41:59
264000 -- (-2218.280) [-2210.551] (-2364.284) (-2252.528) * [-2225.641] (-2235.006) (-2256.476) (-2368.349) -- 0:41:54
265000 -- (-2218.282) [-2215.459] (-2384.610) (-2252.418) * (-2239.575) (-2259.214) [-2230.687] (-2366.000) -- 0:41:52
Average standard deviation of split frequencies: 0.027469
266000 -- [-2219.102] (-2223.041) (-2371.479) (-2250.986) * (-2226.780) (-2240.346) [-2220.665] (-2393.877) -- 0:41:48
267000 -- (-2224.671) (-2244.305) (-2374.288) [-2227.573] * (-2235.525) (-2258.328) [-2202.132] (-2374.435) -- 0:41:46
268000 -- [-2228.742] (-2252.816) (-2392.999) (-2224.920) * (-2225.989) (-2271.652) [-2222.672] (-2385.394) -- 0:41:41
269000 -- [-2219.165] (-2249.113) (-2368.265) (-2238.086) * (-2246.181) (-2260.512) [-2218.893] (-2377.835) -- 0:41:40
270000 -- (-2238.851) (-2264.606) (-2371.106) [-2215.163] * (-2241.687) (-2238.793) [-2229.452] (-2371.417) -- 0:41:38
Average standard deviation of split frequencies: 0.028047
271000 -- (-2218.753) (-2274.601) (-2329.473) [-2199.637] * (-2219.868) [-2218.867] (-2231.572) (-2374.169) -- 0:41:33
272000 -- (-2217.862) (-2256.054) (-2349.359) [-2214.563] * (-2206.873) [-2229.211] (-2232.446) (-2370.120) -- 0:41:29
273000 -- (-2225.574) (-2250.606) (-2363.916) [-2213.665] * [-2198.090] (-2241.338) (-2219.784) (-2381.002) -- 0:41:24
274000 -- (-2224.729) (-2249.221) (-2390.099) [-2220.191] * [-2213.328] (-2223.352) (-2237.825) (-2374.663) -- 0:41:22
275000 -- [-2222.650] (-2253.276) (-2374.679) (-2221.452) * (-2216.373) (-2226.355) [-2212.486] (-2373.137) -- 0:41:18
Average standard deviation of split frequencies: 0.028338
276000 -- [-2211.274] (-2246.292) (-2376.721) (-2224.026) * (-2241.859) (-2216.490) [-2213.197] (-2380.252) -- 0:41:16
277000 -- [-2221.845] (-2234.318) (-2380.732) (-2225.651) * (-2246.838) (-2223.737) [-2209.307] (-2381.366) -- 0:41:11
278000 -- [-2193.551] (-2236.916) (-2382.606) (-2241.246) * (-2219.850) (-2254.380) [-2215.468] (-2366.640) -- 0:41:09
279000 -- [-2194.961] (-2237.698) (-2373.329) (-2238.177) * (-2212.991) (-2240.404) [-2217.345] (-2361.105) -- 0:41:05
280000 -- [-2199.833] (-2240.745) (-2373.612) (-2266.585) * (-2226.659) (-2265.618) [-2218.625] (-2391.774) -- 0:41:03
Average standard deviation of split frequencies: 0.028199
281000 -- [-2211.236] (-2220.643) (-2369.075) (-2262.724) * (-2210.484) (-2232.880) [-2220.947] (-2399.802) -- 0:40:58
282000 -- (-2229.508) [-2199.976] (-2382.177) (-2259.273) * [-2211.997] (-2237.125) (-2237.744) (-2375.896) -- 0:40:56
283000 -- [-2194.576] (-2222.304) (-2363.661) (-2242.654) * (-2223.847) (-2235.005) [-2222.655] (-2389.222) -- 0:40:52
284000 -- (-2212.456) [-2214.720] (-2365.631) (-2243.357) * [-2211.608] (-2242.475) (-2225.940) (-2390.392) -- 0:40:50
285000 -- [-2213.015] (-2216.774) (-2367.639) (-2249.789) * (-2229.145) (-2254.815) [-2229.554] (-2367.887) -- 0:40:48
Average standard deviation of split frequencies: 0.027517
286000 -- [-2211.549] (-2214.620) (-2366.922) (-2251.792) * (-2233.847) (-2243.479) [-2218.474] (-2365.347) -- 0:40:44
287000 -- (-2224.600) [-2232.162] (-2399.573) (-2237.630) * (-2246.385) (-2234.812) [-2237.703] (-2382.669) -- 0:40:42
288000 -- [-2203.908] (-2222.640) (-2375.191) (-2250.467) * (-2237.470) (-2219.012) [-2213.648] (-2387.608) -- 0:40:37
289000 -- [-2211.258] (-2239.585) (-2367.639) (-2231.855) * (-2237.261) (-2220.723) [-2202.582] (-2392.507) -- 0:40:33
290000 -- [-2212.808] (-2254.925) (-2382.789) (-2237.383) * (-2255.756) (-2222.149) [-2213.122] (-2380.336) -- 0:40:31
Average standard deviation of split frequencies: 0.027911
291000 -- [-2229.366] (-2264.313) (-2387.711) (-2244.382) * (-2262.641) (-2223.836) [-2204.582] (-2373.595) -- 0:40:26
292000 -- [-2226.601] (-2251.615) (-2390.540) (-2210.050) * (-2269.879) (-2220.907) [-2200.348] (-2366.544) -- 0:40:24
293000 -- (-2215.582) (-2247.280) (-2381.688) [-2218.080] * (-2253.342) (-2214.273) [-2199.468] (-2382.327) -- 0:40:20
294000 -- (-2236.173) (-2245.845) (-2381.546) [-2208.613] * (-2234.332) (-2232.530) [-2200.916] (-2388.496) -- 0:40:18
295000 -- [-2211.583] (-2269.433) (-2396.763) (-2204.188) * (-2221.024) (-2234.277) [-2204.128] (-2405.406) -- 0:40:13
Average standard deviation of split frequencies: 0.028107
296000 -- (-2220.928) (-2269.782) (-2382.511) [-2202.744] * [-2223.633] (-2230.799) (-2211.809) (-2377.148) -- 0:40:09
297000 -- (-2225.109) (-2243.436) (-2383.800) [-2208.205] * [-2232.755] (-2212.445) (-2210.108) (-2385.497) -- 0:40:07
298000 -- (-2224.317) (-2250.535) (-2392.016) [-2223.028] * (-2227.683) (-2223.991) [-2208.857] (-2361.582) -- 0:40:02
299000 -- (-2244.498) (-2254.227) (-2398.950) [-2222.144] * (-2227.086) (-2214.126) [-2189.795] (-2367.130) -- 0:40:00
300000 -- (-2230.501) (-2235.502) (-2364.252) [-2222.086] * (-2216.229) (-2240.556) [-2199.611] (-2366.018) -- 0:39:56
Average standard deviation of split frequencies: 0.027696
301000 -- (-2231.594) (-2234.178) (-2364.168) [-2232.268] * [-2212.419] (-2248.002) (-2214.732) (-2387.862) -- 0:39:54
302000 -- (-2224.043) (-2265.567) (-2390.957) [-2236.813] * [-2207.352] (-2227.999) (-2206.512) (-2390.986) -- 0:39:49
303000 -- [-2221.029] (-2269.968) (-2398.194) (-2219.814) * (-2209.696) (-2264.393) [-2184.112] (-2376.269) -- 0:39:47
304000 -- (-2220.567) (-2255.659) (-2388.023) [-2228.865] * (-2227.952) (-2273.515) [-2196.476] (-2381.579) -- 0:39:43
305000 -- (-2230.807) (-2249.844) (-2409.022) [-2219.509] * (-2234.497) (-2246.341) [-2199.628] (-2365.176) -- 0:39:41
Average standard deviation of split frequencies: 0.027758
306000 -- (-2231.751) (-2243.812) (-2390.588) [-2231.679] * (-2224.241) (-2229.417) [-2202.278] (-2383.677) -- 0:39:36
307000 -- [-2220.454] (-2242.255) (-2380.047) (-2229.796) * (-2226.552) (-2252.954) [-2209.655] (-2386.294) -- 0:39:34
308000 -- (-2249.958) (-2254.637) (-2365.570) [-2203.762] * (-2249.142) (-2232.775) [-2213.168] (-2396.916) -- 0:39:32
309000 -- (-2243.386) (-2261.938) (-2378.691) [-2227.891] * (-2277.877) (-2228.934) [-2233.787] (-2388.987) -- 0:39:28
310000 -- [-2249.688] (-2259.531) (-2378.288) (-2225.726) * (-2222.354) [-2239.045] (-2249.375) (-2424.032) -- 0:39:23
Average standard deviation of split frequencies: 0.027674
311000 -- [-2231.693] (-2253.772) (-2366.879) (-2225.653) * (-2228.726) [-2234.210] (-2232.504) (-2370.616) -- 0:39:21
312000 -- (-2232.762) (-2257.311) (-2381.109) [-2225.698] * [-2237.588] (-2250.789) (-2218.145) (-2382.484) -- 0:39:17
313000 -- (-2238.952) (-2270.914) (-2394.733) [-2220.041] * [-2215.215] (-2243.058) (-2234.504) (-2371.315) -- 0:39:12
314000 -- (-2232.868) (-2275.389) (-2378.344) [-2223.392] * [-2209.703] (-2235.501) (-2246.136) (-2364.918) -- 0:39:10
315000 -- [-2238.103] (-2235.751) (-2377.970) (-2225.725) * [-2226.355] (-2221.938) (-2236.916) (-2362.811) -- 0:39:06
Average standard deviation of split frequencies: 0.027880
316000 -- (-2222.853) [-2215.257] (-2382.188) (-2213.544) * [-2194.873] (-2246.669) (-2218.336) (-2361.322) -- 0:39:04
317000 -- (-2238.233) [-2204.136] (-2367.377) (-2229.598) * [-2206.302] (-2239.000) (-2234.155) (-2377.961) -- 0:38:59
318000 -- (-2246.461) [-2205.923] (-2397.552) (-2264.419) * [-2208.024] (-2234.678) (-2229.989) (-2376.569) -- 0:38:57
319000 -- [-2233.589] (-2246.683) (-2385.482) (-2233.482) * [-2196.139] (-2214.319) (-2244.130) (-2371.237) -- 0:38:53
320000 -- (-2229.823) (-2258.273) (-2377.763) [-2200.881] * (-2230.788) [-2210.977] (-2230.580) (-2370.815) -- 0:38:51
Average standard deviation of split frequencies: 0.028004
321000 -- (-2238.657) (-2249.296) (-2366.026) [-2183.962] * (-2218.269) [-2194.845] (-2237.699) (-2362.792) -- 0:38:46
322000 -- (-2233.506) (-2236.379) (-2379.071) [-2202.287] * (-2224.247) [-2211.068] (-2254.019) (-2366.967) -- 0:38:42
323000 -- (-2252.361) (-2226.852) (-2363.223) [-2207.295] * [-2211.444] (-2206.382) (-2228.710) (-2392.282) -- 0:38:40
324000 -- (-2237.980) (-2232.050) (-2354.233) [-2206.044] * [-2190.420] (-2214.281) (-2222.398) (-2380.528) -- 0:38:38
325000 -- (-2236.140) (-2256.048) (-2361.409) [-2220.434] * [-2179.399] (-2217.517) (-2241.664) (-2373.852) -- 0:38:33
Average standard deviation of split frequencies: 0.027483
326000 -- (-2257.898) (-2243.634) (-2376.862) [-2225.381] * [-2183.791] (-2216.330) (-2244.784) (-2400.507) -- 0:38:29
327000 -- (-2241.003) (-2246.728) (-2372.302) [-2217.007] * [-2185.743] (-2221.294) (-2236.227) (-2388.800) -- 0:38:27
328000 -- (-2231.957) (-2237.801) (-2391.265) [-2201.784] * [-2187.023] (-2229.047) (-2216.446) (-2384.975) -- 0:38:22
329000 -- (-2253.604) (-2237.964) (-2393.282) [-2211.879] * (-2207.032) [-2203.280] (-2239.507) (-2375.058) -- 0:38:20
330000 -- (-2240.977) (-2245.515) (-2402.002) [-2198.272] * (-2214.346) [-2201.682] (-2223.579) (-2367.609) -- 0:38:16
Average standard deviation of split frequencies: 0.027597
331000 -- (-2235.252) (-2218.589) (-2388.688) [-2216.055] * (-2207.024) [-2200.333] (-2228.352) (-2367.080) -- 0:38:14
332000 -- (-2206.861) (-2254.114) (-2363.113) [-2206.497] * (-2217.697) [-2222.548] (-2226.560) (-2355.161) -- 0:38:09
333000 -- (-2230.590) (-2228.086) (-2367.315) [-2198.863] * (-2222.546) [-2204.066] (-2228.761) (-2383.317) -- 0:38:05
334000 -- (-2248.663) (-2214.869) (-2360.761) [-2214.167] * (-2234.467) [-2208.941] (-2231.821) (-2380.927) -- 0:38:03
335000 -- (-2240.357) (-2198.510) (-2362.061) [-2206.201] * (-2255.017) [-2203.752] (-2231.067) (-2381.370) -- 0:37:58
Average standard deviation of split frequencies: 0.028170
336000 -- (-2251.906) [-2213.928] (-2366.771) (-2205.450) * (-2238.113) [-2198.233] (-2249.222) (-2372.641) -- 0:37:56
337000 -- (-2251.525) (-2204.473) (-2366.627) [-2226.569] * (-2230.335) (-2212.479) [-2239.547] (-2364.117) -- 0:37:52
338000 -- (-2266.951) (-2215.375) (-2377.449) [-2209.113] * (-2219.867) (-2234.507) [-2207.972] (-2384.970) -- 0:37:49
339000 -- (-2243.763) [-2215.361] (-2390.032) (-2228.959) * [-2202.442] (-2231.430) (-2229.365) (-2376.292) -- 0:37:47
340000 -- [-2205.981] (-2197.068) (-2380.884) (-2243.648) * (-2226.525) [-2201.617] (-2238.485) (-2370.519) -- 0:37:43
Average standard deviation of split frequencies: 0.028109
341000 -- [-2186.972] (-2195.982) (-2368.516) (-2256.008) * [-2219.427] (-2217.203) (-2253.475) (-2375.184) -- 0:37:41
342000 -- [-2198.252] (-2217.598) (-2364.981) (-2229.399) * (-2225.035) [-2203.283] (-2262.602) (-2380.729) -- 0:37:36
343000 -- (-2194.846) [-2221.574] (-2381.261) (-2213.287) * (-2229.701) [-2219.300] (-2233.346) (-2372.543) -- 0:37:32
344000 -- [-2191.701] (-2233.761) (-2377.372) (-2222.631) * (-2252.041) [-2235.453] (-2253.679) (-2354.254) -- 0:37:30
345000 -- [-2210.864] (-2254.112) (-2390.563) (-2215.722) * (-2236.075) [-2220.369] (-2244.911) (-2367.314) -- 0:37:27
Average standard deviation of split frequencies: 0.028246
346000 -- [-2203.428] (-2261.651) (-2394.147) (-2216.375) * (-2246.168) [-2194.032] (-2247.833) (-2374.089) -- 0:37:23
347000 -- [-2192.522] (-2236.163) (-2411.072) (-2231.121) * (-2238.250) [-2211.119] (-2240.738) (-2391.080) -- 0:37:21
348000 -- [-2195.462] (-2222.867) (-2411.853) (-2222.355) * (-2241.770) [-2197.937] (-2233.186) (-2379.155) -- 0:37:17
349000 -- [-2201.591] (-2243.890) (-2394.284) (-2219.543) * (-2227.180) [-2208.332] (-2214.633) (-2402.863) -- 0:37:14
350000 -- [-2214.686] (-2251.809) (-2401.432) (-2209.672) * (-2233.589) (-2217.887) [-2204.702] (-2392.005) -- 0:37:10
Average standard deviation of split frequencies: 0.028384
351000 -- [-2205.370] (-2265.958) (-2381.983) (-2225.544) * (-2238.947) (-2229.494) [-2205.507] (-2387.324) -- 0:37:08
352000 -- [-2200.069] (-2245.272) (-2392.249) (-2211.120) * (-2226.218) (-2216.445) [-2196.825] (-2395.833) -- 0:37:03
353000 -- (-2218.423) (-2239.870) (-2411.780) [-2220.316] * (-2241.917) (-2207.540) [-2196.412] (-2383.331) -- 0:36:59
354000 -- (-2218.237) (-2218.786) (-2376.545) [-2215.086] * (-2284.561) (-2237.281) [-2179.626] (-2372.815) -- 0:36:57
355000 -- (-2236.418) (-2243.881) (-2372.395) [-2210.464] * (-2250.736) (-2224.708) [-2214.393] (-2363.395) -- 0:36:52
Average standard deviation of split frequencies: 0.027966
356000 -- (-2249.482) (-2248.768) (-2374.379) [-2222.276] * (-2265.863) (-2229.369) [-2226.237] (-2373.901) -- 0:36:50
357000 -- (-2232.037) (-2239.078) (-2389.357) [-2218.463] * (-2249.503) (-2229.181) [-2219.042] (-2366.639) -- 0:36:46
358000 -- (-2230.933) (-2233.187) (-2409.143) [-2230.266] * (-2246.402) (-2223.930) [-2188.418] (-2387.539) -- 0:36:42
359000 -- (-2243.745) (-2227.759) (-2415.274) [-2211.540] * (-2243.927) (-2231.398) [-2197.747] (-2364.901) -- 0:36:39
360000 -- (-2245.662) (-2233.762) (-2416.208) [-2209.938] * (-2246.832) (-2259.024) [-2184.168] (-2385.174) -- 0:36:35
Average standard deviation of split frequencies: 0.027773
361000 -- (-2215.741) (-2234.483) (-2417.752) [-2217.458] * (-2217.271) (-2238.711) [-2187.437] (-2365.241) -- 0:36:31
362000 -- (-2213.117) (-2245.550) (-2397.031) [-2209.714] * (-2228.858) (-2250.754) [-2168.907] (-2381.739) -- 0:36:28
363000 -- (-2235.987) (-2247.634) (-2385.983) [-2215.348] * (-2219.313) (-2247.430) [-2184.711] (-2373.446) -- 0:36:24
364000 -- (-2224.566) (-2253.829) (-2373.267) [-2217.910] * (-2253.719) (-2233.849) [-2202.511] (-2377.003) -- 0:36:20
365000 -- (-2224.247) (-2248.040) (-2384.453) [-2210.532] * (-2214.127) (-2223.244) [-2222.980] (-2365.503) -- 0:36:18
Average standard deviation of split frequencies: 0.027428
366000 -- (-2222.952) (-2262.589) (-2389.284) [-2209.282] * (-2217.923) (-2264.358) [-2209.740] (-2358.650) -- 0:36:13
367000 -- [-2202.598] (-2256.464) (-2407.674) (-2224.074) * (-2226.515) (-2251.458) [-2221.196] (-2360.295) -- 0:36:09
368000 -- [-2200.988] (-2255.588) (-2386.505) (-2240.160) * (-2237.862) (-2248.526) [-2204.527] (-2352.414) -- 0:36:07
369000 -- [-2214.721] (-2259.755) (-2394.935) (-2249.093) * (-2260.803) (-2238.324) [-2201.343] (-2364.682) -- 0:36:03
370000 -- [-2199.397] (-2249.194) (-2420.452) (-2251.482) * (-2249.512) (-2253.759) [-2186.248] (-2365.517) -- 0:36:00
Average standard deviation of split frequencies: 0.026160
371000 -- [-2210.687] (-2264.233) (-2373.529) (-2245.252) * (-2248.324) (-2245.714) [-2207.577] (-2352.843) -- 0:35:56
372000 -- [-2198.728] (-2252.947) (-2383.745) (-2230.871) * (-2248.465) (-2225.751) [-2212.448] (-2366.747) -- 0:35:52
373000 -- [-2202.326] (-2244.968) (-2382.023) (-2255.573) * (-2226.227) (-2227.051) [-2208.522] (-2368.541) -- 0:35:49
374000 -- (-2226.680) (-2264.699) (-2388.603) [-2233.588] * [-2228.236] (-2239.416) (-2227.341) (-2379.478) -- 0:35:45
375000 -- [-2235.251] (-2266.289) (-2396.358) (-2234.413) * [-2212.613] (-2244.673) (-2221.700) (-2371.379) -- 0:35:43
Average standard deviation of split frequencies: 0.025152
376000 -- [-2219.876] (-2245.589) (-2390.532) (-2222.505) * (-2214.372) (-2263.696) [-2222.281] (-2369.575) -- 0:35:39
377000 -- (-2221.446) (-2246.288) (-2411.102) [-2228.152] * [-2208.286] (-2249.624) (-2218.809) (-2349.721) -- 0:35:35
378000 -- (-2248.255) (-2242.656) (-2384.626) [-2218.911] * [-2203.616] (-2264.149) (-2223.786) (-2347.885) -- 0:35:32
379000 -- (-2257.558) (-2245.620) (-2377.990) [-2212.055] * (-2207.655) (-2243.984) [-2232.137] (-2344.407) -- 0:35:28
380000 -- (-2241.514) [-2212.629] (-2388.781) (-2228.589) * [-2231.720] (-2261.778) (-2221.286) (-2370.061) -- 0:35:25
Average standard deviation of split frequencies: 0.025010
381000 -- (-2232.251) [-2210.811] (-2390.062) (-2245.122) * (-2231.514) (-2264.188) [-2206.381] (-2365.088) -- 0:35:21
382000 -- (-2238.238) [-2204.376] (-2382.744) (-2249.787) * (-2226.887) (-2259.984) [-2206.805] (-2360.490) -- 0:35:19
383000 -- (-2217.842) [-2206.835] (-2369.314) (-2267.169) * (-2234.703) (-2280.332) [-2203.930] (-2381.206) -- 0:35:15
384000 -- (-2222.055) [-2214.759] (-2379.449) (-2252.476) * (-2227.526) (-2268.294) [-2207.586] (-2389.369) -- 0:35:12
385000 -- (-2217.026) [-2202.586] (-2379.341) (-2247.930) * (-2242.596) (-2261.961) [-2204.594] (-2354.801) -- 0:35:08
Average standard deviation of split frequencies: 0.024939
386000 -- [-2218.738] (-2211.800) (-2386.776) (-2269.002) * (-2229.573) (-2270.517) [-2201.545] (-2357.945) -- 0:35:06
387000 -- (-2216.900) [-2214.285] (-2392.647) (-2257.658) * [-2220.562] (-2267.425) (-2214.669) (-2383.158) -- 0:35:01
388000 -- [-2214.213] (-2214.275) (-2383.070) (-2234.526) * (-2235.182) (-2237.051) [-2214.128] (-2395.937) -- 0:34:57
389000 -- (-2215.640) [-2220.274] (-2364.164) (-2209.219) * (-2229.736) (-2259.647) [-2212.285] (-2387.792) -- 0:34:55
390000 -- (-2215.385) [-2219.662] (-2387.330) (-2244.341) * (-2219.556) (-2259.972) [-2201.028] (-2378.511) -- 0:34:51
Average standard deviation of split frequencies: 0.024657
391000 -- (-2248.741) [-2193.359] (-2375.338) (-2211.251) * (-2239.300) (-2231.850) [-2217.363] (-2372.793) -- 0:34:47
392000 -- (-2279.283) [-2215.810] (-2368.129) (-2222.445) * (-2257.942) (-2217.915) [-2212.275] (-2382.504) -- 0:34:44
393000 -- (-2263.378) (-2211.938) (-2391.682) [-2215.668] * (-2240.937) [-2210.698] (-2220.215) (-2389.831) -- 0:34:40
394000 -- (-2247.329) (-2239.534) (-2390.330) [-2249.773] * [-2218.153] (-2209.129) (-2239.446) (-2376.742) -- 0:34:36
395000 -- (-2226.767) [-2213.585] (-2381.185) (-2214.470) * [-2208.591] (-2212.783) (-2235.815) (-2376.723) -- 0:34:33
Average standard deviation of split frequencies: 0.024124
396000 -- (-2244.374) [-2219.102] (-2359.635) (-2213.562) * (-2219.341) [-2215.990] (-2233.096) (-2378.264) -- 0:34:29
397000 -- (-2260.318) (-2218.382) (-2367.180) [-2216.753] * (-2224.217) [-2204.778] (-2233.725) (-2381.759) -- 0:34:25
398000 -- (-2249.410) [-2219.745] (-2370.909) (-2237.124) * (-2227.625) [-2214.999] (-2260.945) (-2409.305) -- 0:34:23
399000 -- (-2284.559) [-2214.335] (-2390.978) (-2237.516) * (-2236.911) [-2217.008] (-2252.105) (-2379.382) -- 0:34:19
400000 -- (-2264.587) [-2211.637] (-2386.523) (-2231.440) * (-2246.598) [-2227.943] (-2237.833) (-2376.469) -- 0:34:16
Average standard deviation of split frequencies: 0.023933
401000 -- (-2258.160) [-2215.351] (-2383.849) (-2221.746) * (-2239.003) [-2228.314] (-2223.253) (-2351.631) -- 0:34:12
402000 -- (-2252.238) [-2234.424] (-2384.909) (-2224.321) * [-2222.449] (-2227.805) (-2236.819) (-2370.464) -- 0:34:09
403000 -- (-2257.616) (-2223.819) (-2376.399) [-2211.728] * [-2223.076] (-2227.851) (-2237.311) (-2361.413) -- 0:34:05
404000 -- (-2246.976) (-2236.026) (-2404.111) [-2193.376] * [-2205.068] (-2227.187) (-2236.500) (-2391.868) -- 0:34:01
405000 -- (-2247.119) (-2227.169) (-2397.297) [-2212.798] * [-2225.676] (-2235.198) (-2251.719) (-2383.451) -- 0:33:59
Average standard deviation of split frequencies: 0.023586
406000 -- (-2244.981) (-2215.502) (-2376.558) [-2216.561] * (-2210.347) [-2222.594] (-2266.210) (-2393.755) -- 0:33:56
407000 -- (-2224.889) (-2217.464) (-2380.898) [-2212.352] * (-2220.523) [-2214.811] (-2270.761) (-2402.692) -- 0:33:52
408000 -- (-2232.891) (-2220.347) (-2398.216) [-2211.319] * (-2220.977) [-2223.281] (-2233.638) (-2391.402) -- 0:33:49
409000 -- (-2257.656) (-2229.684) (-2394.697) [-2217.054] * (-2202.891) [-2225.889] (-2230.177) (-2389.769) -- 0:33:45
410000 -- (-2221.076) [-2222.998] (-2407.976) (-2211.202) * [-2210.458] (-2209.150) (-2239.680) (-2402.398) -- 0:33:43
Average standard deviation of split frequencies: 0.023266
411000 -- (-2235.670) (-2218.398) (-2392.321) [-2205.690] * [-2218.286] (-2237.806) (-2247.848) (-2360.819) -- 0:33:39
412000 -- (-2260.337) [-2197.427] (-2390.241) (-2219.873) * (-2210.845) [-2222.344] (-2236.920) (-2361.004) -- 0:33:35
413000 -- (-2239.472) [-2208.241] (-2379.727) (-2218.002) * [-2201.459] (-2221.955) (-2232.016) (-2346.744) -- 0:33:32
414000 -- (-2250.667) (-2243.308) (-2372.635) [-2205.286] * [-2216.050] (-2237.011) (-2226.186) (-2358.971) -- 0:33:28
415000 -- (-2256.432) (-2223.764) (-2350.413) [-2210.498] * (-2208.982) [-2241.904] (-2227.517) (-2374.475) -- 0:33:25
Average standard deviation of split frequencies: 0.023009
416000 -- (-2277.759) [-2211.943] (-2368.977) (-2215.034) * [-2214.375] (-2228.859) (-2242.534) (-2374.162) -- 0:33:21
417000 -- (-2255.467) (-2220.076) (-2375.940) [-2224.000] * [-2204.982] (-2229.585) (-2232.586) (-2383.643) -- 0:33:19
418000 -- (-2211.814) (-2255.200) (-2380.697) [-2221.422] * [-2218.355] (-2231.887) (-2215.655) (-2368.814) -- 0:33:15
419000 -- (-2229.478) (-2256.310) (-2377.759) [-2209.100] * [-2205.738] (-2232.847) (-2246.578) (-2399.103) -- 0:33:12
420000 -- (-2232.262) (-2241.385) (-2368.492) [-2225.785] * [-2213.756] (-2227.632) (-2238.036) (-2395.875) -- 0:33:08
Average standard deviation of split frequencies: 0.022804
421000 -- [-2211.309] (-2250.542) (-2373.607) (-2245.805) * [-2210.158] (-2229.967) (-2247.152) (-2386.548) -- 0:33:05
422000 -- [-2218.522] (-2250.796) (-2354.728) (-2261.727) * [-2202.528] (-2219.769) (-2254.536) (-2372.363) -- 0:33:01
423000 -- [-2210.750] (-2215.792) (-2377.428) (-2244.283) * (-2207.604) [-2203.928] (-2260.195) (-2373.593) -- 0:32:59
424000 -- [-2193.285] (-2262.137) (-2363.368) (-2241.258) * (-2205.421) [-2229.156] (-2250.439) (-2369.468) -- 0:32:55
425000 -- [-2199.013] (-2248.148) (-2362.487) (-2242.714) * [-2208.323] (-2216.477) (-2251.002) (-2370.321) -- 0:32:52
Average standard deviation of split frequencies: 0.022098
426000 -- [-2201.602] (-2237.704) (-2392.821) (-2252.261) * (-2226.533) (-2206.470) [-2210.813] (-2372.742) -- 0:32:48
427000 -- [-2186.511] (-2232.090) (-2384.021) (-2216.655) * (-2244.776) [-2195.791] (-2225.575) (-2376.485) -- 0:32:44
428000 -- [-2196.992] (-2234.951) (-2365.750) (-2220.453) * (-2216.890) [-2202.160] (-2266.899) (-2376.156) -- 0:32:41
429000 -- [-2212.135] (-2255.612) (-2373.644) (-2219.118) * [-2199.403] (-2235.054) (-2255.286) (-2373.808) -- 0:32:37
430000 -- (-2234.389) (-2248.279) (-2378.335) [-2208.279] * [-2205.507] (-2241.340) (-2253.011) (-2371.844) -- 0:32:35
Average standard deviation of split frequencies: 0.022032
431000 -- (-2225.697) (-2263.754) (-2376.719) [-2212.481] * (-2218.964) [-2225.236] (-2237.403) (-2379.985) -- 0:32:32
432000 -- (-2234.960) (-2233.928) (-2363.833) [-2206.637] * [-2204.691] (-2219.115) (-2244.292) (-2386.062) -- 0:32:28
433000 -- (-2231.240) [-2231.696] (-2415.238) (-2230.250) * (-2230.300) [-2215.014] (-2231.620) (-2361.521) -- 0:32:25
434000 -- (-2235.881) (-2251.751) (-2420.612) [-2228.770] * (-2226.866) [-2227.769] (-2254.366) (-2368.976) -- 0:32:21
435000 -- (-2211.366) (-2232.546) (-2398.792) [-2233.880] * [-2218.252] (-2217.320) (-2251.563) (-2377.831) -- 0:32:19
Average standard deviation of split frequencies: 0.021425
436000 -- [-2215.577] (-2231.367) (-2384.643) (-2241.862) * [-2219.593] (-2223.268) (-2232.989) (-2394.952) -- 0:32:15
437000 -- [-2198.555] (-2245.678) (-2388.874) (-2246.427) * (-2219.511) [-2215.388] (-2238.524) (-2379.174) -- 0:32:11
438000 -- [-2207.522] (-2258.714) (-2377.473) (-2248.123) * (-2223.010) [-2209.779] (-2272.968) (-2375.405) -- 0:32:08
439000 -- (-2224.632) (-2257.551) (-2397.057) [-2215.398] * (-2215.070) [-2213.516] (-2249.488) (-2390.474) -- 0:32:04
440000 -- (-2213.890) (-2250.984) (-2403.357) [-2202.643] * [-2212.743] (-2227.571) (-2262.700) (-2370.908) -- 0:32:00
Average standard deviation of split frequencies: 0.021003
441000 -- (-2218.504) (-2242.417) (-2365.561) [-2225.077] * [-2218.073] (-2212.961) (-2259.593) (-2370.469) -- 0:31:57
442000 -- [-2230.299] (-2240.799) (-2374.875) (-2230.397) * [-2224.513] (-2231.828) (-2258.367) (-2349.935) -- 0:31:53
443000 -- [-2211.711] (-2222.194) (-2385.696) (-2236.198) * [-2215.969] (-2218.971) (-2240.543) (-2354.785) -- 0:31:51
444000 -- (-2228.673) [-2220.027] (-2362.209) (-2248.828) * (-2213.935) [-2211.126] (-2237.429) (-2370.196) -- 0:31:47
445000 -- [-2211.551] (-2205.455) (-2365.232) (-2255.217) * (-2218.087) [-2220.423] (-2252.148) (-2388.974) -- 0:31:44
Average standard deviation of split frequencies: 0.020793
446000 -- [-2187.441] (-2206.359) (-2351.504) (-2263.546) * [-2212.219] (-2218.316) (-2234.966) (-2351.783) -- 0:31:40
447000 -- [-2199.044] (-2215.331) (-2370.587) (-2248.608) * (-2209.743) [-2199.879] (-2248.288) (-2370.772) -- 0:31:37
448000 -- (-2221.685) [-2220.033] (-2389.842) (-2237.998) * [-2205.207] (-2225.399) (-2241.304) (-2370.143) -- 0:31:33
449000 -- [-2216.248] (-2207.177) (-2368.599) (-2245.029) * [-2215.761] (-2231.151) (-2230.373) (-2369.363) -- 0:31:31
450000 -- (-2220.529) [-2192.699] (-2392.207) (-2247.173) * (-2208.219) [-2232.068] (-2235.599) (-2379.029) -- 0:31:27
Average standard deviation of split frequencies: 0.020881
451000 -- (-2223.869) [-2199.680] (-2394.935) (-2234.274) * [-2205.086] (-2243.392) (-2230.787) (-2377.823) -- 0:31:24
452000 -- (-2236.079) [-2216.494] (-2399.973) (-2236.710) * [-2195.848] (-2243.003) (-2226.459) (-2358.869) -- 0:31:20
453000 -- (-2215.089) [-2212.880] (-2389.254) (-2256.908) * [-2204.764] (-2241.942) (-2245.430) (-2389.575) -- 0:31:17
454000 -- [-2209.442] (-2223.941) (-2375.706) (-2253.135) * [-2191.603] (-2254.274) (-2251.790) (-2412.815) -- 0:31:13
455000 -- [-2208.631] (-2215.100) (-2377.496) (-2241.312) * [-2205.975] (-2242.891) (-2251.118) (-2381.734) -- 0:31:09
Average standard deviation of split frequencies: 0.020740
456000 -- (-2219.482) [-2232.124] (-2406.993) (-2247.265) * [-2206.905] (-2241.471) (-2242.741) (-2368.651) -- 0:31:07
457000 -- (-2223.377) [-2215.974] (-2394.598) (-2262.342) * [-2213.628] (-2224.787) (-2246.119) (-2371.917) -- 0:31:04
458000 -- [-2233.807] (-2255.883) (-2396.199) (-2246.556) * [-2201.084] (-2228.111) (-2235.285) (-2368.582) -- 0:31:00
459000 -- [-2201.291] (-2227.433) (-2358.311) (-2261.014) * [-2209.889] (-2242.151) (-2247.463) (-2394.060) -- 0:30:57
460000 -- (-2223.253) (-2269.516) (-2377.461) [-2242.202] * [-2213.295] (-2270.752) (-2249.331) (-2402.360) -- 0:30:53
Average standard deviation of split frequencies: 0.020620
461000 -- [-2217.849] (-2251.198) (-2363.934) (-2249.289) * [-2203.163] (-2224.043) (-2244.115) (-2384.603) -- 0:30:49
462000 -- [-2215.044] (-2228.742) (-2360.094) (-2225.764) * [-2204.031] (-2216.625) (-2239.723) (-2359.587) -- 0:30:46
463000 -- [-2203.115] (-2244.273) (-2371.579) (-2224.767) * [-2198.112] (-2217.617) (-2224.353) (-2375.195) -- 0:30:42
464000 -- [-2193.456] (-2220.090) (-2366.770) (-2247.072) * [-2208.210] (-2229.135) (-2262.815) (-2380.372) -- 0:30:40
465000 -- (-2235.822) [-2208.328] (-2365.917) (-2240.764) * (-2215.333) [-2225.077] (-2255.873) (-2385.897) -- 0:30:36
Average standard deviation of split frequencies: 0.020691
466000 -- [-2213.948] (-2218.042) (-2386.372) (-2231.557) * (-2234.987) [-2221.341] (-2251.222) (-2382.960) -- 0:30:32
467000 -- (-2233.111) (-2246.086) (-2378.760) [-2222.714] * (-2219.353) [-2198.314] (-2259.571) (-2378.439) -- 0:30:29
468000 -- (-2241.315) [-2251.944] (-2363.809) (-2226.049) * (-2226.225) [-2199.782] (-2225.323) (-2398.519) -- 0:30:25
469000 -- [-2216.304] (-2238.580) (-2368.345) (-2259.590) * (-2221.215) [-2210.958] (-2232.382) (-2396.850) -- 0:30:22
470000 -- [-2200.086] (-2231.361) (-2394.972) (-2269.912) * (-2236.198) [-2220.557] (-2258.861) (-2360.205) -- 0:30:18
Average standard deviation of split frequencies: 0.020346
471000 -- [-2204.977] (-2228.141) (-2393.703) (-2272.171) * [-2230.092] (-2225.267) (-2243.981) (-2362.136) -- 0:30:16
472000 -- [-2199.532] (-2219.904) (-2395.680) (-2239.829) * [-2213.304] (-2227.858) (-2229.536) (-2358.585) -- 0:30:13
473000 -- [-2213.201] (-2245.631) (-2397.609) (-2239.953) * [-2222.938] (-2215.373) (-2235.027) (-2372.939) -- 0:30:09
474000 -- [-2215.565] (-2263.177) (-2403.922) (-2250.153) * (-2221.732) [-2207.485] (-2269.920) (-2389.201) -- 0:30:06
475000 -- [-2203.519] (-2237.564) (-2384.462) (-2229.153) * [-2213.742] (-2216.404) (-2258.633) (-2372.119) -- 0:30:02
Average standard deviation of split frequencies: 0.019807
476000 -- [-2203.558] (-2240.204) (-2363.998) (-2226.262) * [-2235.993] (-2239.903) (-2258.665) (-2372.806) -- 0:29:58
477000 -- [-2198.225] (-2238.217) (-2379.710) (-2228.259) * (-2232.111) [-2224.953] (-2244.356) (-2387.612) -- 0:29:55
478000 -- [-2196.590] (-2235.815) (-2370.649) (-2233.507) * (-2219.176) [-2231.204] (-2220.637) (-2360.006) -- 0:29:52
479000 -- [-2210.431] (-2249.194) (-2382.393) (-2220.326) * [-2208.976] (-2227.298) (-2228.285) (-2387.761) -- 0:29:49
480000 -- [-2197.646] (-2235.313) (-2398.490) (-2240.530) * (-2226.069) (-2240.454) [-2211.740] (-2380.137) -- 0:29:45
Average standard deviation of split frequencies: 0.019410
481000 -- [-2218.430] (-2251.691) (-2371.206) (-2230.355) * [-2205.368] (-2249.395) (-2233.411) (-2408.618) -- 0:29:42
482000 -- [-2193.046] (-2225.284) (-2379.959) (-2250.316) * [-2214.186] (-2236.435) (-2243.643) (-2386.925) -- 0:29:38
483000 -- [-2192.645] (-2222.060) (-2358.811) (-2239.510) * [-2214.109] (-2223.148) (-2221.711) (-2375.542) -- 0:29:34
484000 -- [-2197.559] (-2221.918) (-2371.812) (-2244.243) * [-2199.239] (-2226.760) (-2231.081) (-2368.954) -- 0:29:31
485000 -- [-2209.421] (-2243.510) (-2388.962) (-2221.275) * [-2206.045] (-2227.389) (-2224.370) (-2399.912) -- 0:29:27
Average standard deviation of split frequencies: 0.018657
486000 -- [-2215.309] (-2232.825) (-2376.058) (-2226.378) * [-2220.223] (-2198.713) (-2231.176) (-2383.268) -- 0:29:25
487000 -- [-2216.052] (-2234.345) (-2363.720) (-2253.628) * [-2213.318] (-2240.393) (-2239.320) (-2393.743) -- 0:29:21
488000 -- [-2201.267] (-2215.573) (-2389.678) (-2238.675) * [-2221.570] (-2231.513) (-2274.978) (-2392.453) -- 0:29:18
489000 -- [-2205.149] (-2228.131) (-2386.877) (-2233.986) * (-2228.196) [-2222.032] (-2238.874) (-2379.088) -- 0:29:14
490000 -- [-2209.250] (-2227.435) (-2376.043) (-2242.476) * (-2235.370) (-2215.524) [-2225.971] (-2362.811) -- 0:29:11
Average standard deviation of split frequencies: 0.018753
491000 -- [-2227.564] (-2242.724) (-2359.413) (-2233.111) * (-2228.305) (-2223.291) [-2226.857] (-2385.478) -- 0:29:07
492000 -- [-2226.515] (-2268.034) (-2378.128) (-2229.187) * [-2217.266] (-2228.226) (-2223.065) (-2393.080) -- 0:29:03
493000 -- [-2232.432] (-2268.392) (-2393.131) (-2228.123) * [-2216.846] (-2231.489) (-2227.601) (-2376.024) -- 0:29:01
494000 -- [-2233.404] (-2250.868) (-2376.530) (-2227.346) * [-2201.660] (-2253.855) (-2221.560) (-2369.261) -- 0:28:57
495000 -- [-2224.738] (-2232.246) (-2386.432) (-2214.092) * [-2194.735] (-2249.800) (-2230.295) (-2390.594) -- 0:28:54
Average standard deviation of split frequencies: 0.018804
496000 -- [-2217.831] (-2244.156) (-2395.741) (-2264.327) * [-2207.542] (-2245.058) (-2238.342) (-2376.730) -- 0:28:50
497000 -- [-2216.822] (-2238.984) (-2391.665) (-2235.420) * [-2204.485] (-2239.485) (-2226.524) (-2365.903) -- 0:28:46
498000 -- [-2217.931] (-2237.153) (-2372.481) (-2245.634) * [-2208.403] (-2216.338) (-2236.514) (-2363.050) -- 0:28:43
499000 -- [-2209.669] (-2219.475) (-2392.720) (-2232.429) * [-2195.847] (-2209.536) (-2227.303) (-2368.585) -- 0:28:39
500000 -- [-2209.411] (-2229.982) (-2390.832) (-2232.308) * (-2226.279) [-2214.548] (-2214.758) (-2364.178) -- 0:28:37
Average standard deviation of split frequencies: 0.018718
501000 -- [-2224.840] (-2221.444) (-2391.309) (-2249.818) * (-2241.291) [-2213.148] (-2223.138) (-2382.731) -- 0:28:33
502000 -- [-2236.026] (-2230.924) (-2377.899) (-2247.925) * (-2214.337) (-2237.840) [-2202.638] (-2387.200) -- 0:28:30
503000 -- [-2213.484] (-2214.967) (-2399.853) (-2220.530) * [-2204.136] (-2231.082) (-2237.002) (-2407.304) -- 0:28:26
504000 -- (-2215.561) [-2202.683] (-2389.836) (-2242.841) * [-2201.210] (-2226.966) (-2236.228) (-2397.575) -- 0:28:23
505000 -- (-2228.000) [-2226.105] (-2373.552) (-2236.774) * [-2201.938] (-2213.941) (-2268.410) (-2392.960) -- 0:28:19
Average standard deviation of split frequencies: 0.018474
506000 -- (-2223.446) [-2204.056] (-2366.557) (-2220.199) * (-2235.493) [-2222.394] (-2246.219) (-2393.046) -- 0:28:16
507000 -- (-2227.281) [-2195.121] (-2359.327) (-2236.770) * (-2247.461) [-2204.257] (-2238.040) (-2385.430) -- 0:28:12
508000 -- (-2244.724) [-2194.305] (-2372.662) (-2222.166) * (-2248.856) [-2208.172] (-2248.517) (-2396.831) -- 0:28:09
509000 -- (-2231.625) [-2175.536] (-2366.764) (-2261.951) * [-2241.806] (-2209.667) (-2247.708) (-2372.449) -- 0:28:05
510000 -- [-2217.166] (-2186.723) (-2352.977) (-2239.208) * (-2212.391) [-2200.415] (-2246.662) (-2393.081) -- 0:28:02
Average standard deviation of split frequencies: 0.018271
511000 -- (-2224.595) [-2198.579] (-2390.168) (-2237.270) * (-2233.045) [-2228.721] (-2259.252) (-2382.491) -- 0:27:58
512000 -- (-2218.529) [-2206.593] (-2368.467) (-2252.358) * (-2213.596) [-2220.132] (-2234.992) (-2409.208) -- 0:27:55
513000 -- [-2205.602] (-2250.014) (-2368.527) (-2248.497) * [-2201.664] (-2238.694) (-2248.129) (-2377.895) -- 0:27:51
514000 -- [-2195.943] (-2251.144) (-2370.884) (-2241.407) * [-2218.715] (-2232.611) (-2250.797) (-2381.093) -- 0:27:47
515000 -- (-2218.895) (-2239.983) (-2389.650) [-2219.440] * [-2213.211] (-2221.987) (-2244.591) (-2374.459) -- 0:27:45
Average standard deviation of split frequencies: 0.018536
516000 -- (-2222.679) (-2246.555) (-2394.953) [-2211.558] * (-2211.532) [-2241.690] (-2241.944) (-2350.038) -- 0:27:41
517000 -- (-2219.662) (-2246.785) (-2381.355) [-2207.970] * [-2208.510] (-2261.194) (-2238.317) (-2385.015) -- 0:27:37
518000 -- [-2187.378] (-2240.227) (-2376.514) (-2215.175) * [-2192.378] (-2236.926) (-2238.892) (-2365.719) -- 0:27:33
519000 -- [-2188.155] (-2232.430) (-2382.076) (-2247.249) * [-2201.390] (-2224.915) (-2257.774) (-2361.181) -- 0:27:30
520000 -- [-2181.250] (-2239.137) (-2399.531) (-2216.980) * [-2198.533] (-2230.875) (-2241.905) (-2366.620) -- 0:27:26
Average standard deviation of split frequencies: 0.018518
521000 -- (-2219.672) (-2217.538) (-2342.009) [-2204.783] * [-2203.412] (-2233.807) (-2263.656) (-2395.570) -- 0:27:23
522000 -- (-2202.477) (-2239.250) (-2360.551) [-2205.161] * [-2211.867] (-2218.103) (-2247.856) (-2367.558) -- 0:27:20
523000 -- [-2205.794] (-2227.286) (-2379.822) (-2205.361) * [-2193.597] (-2231.935) (-2240.842) (-2387.736) -- 0:27:16
524000 -- [-2210.713] (-2219.688) (-2387.014) (-2219.499) * [-2209.103] (-2264.155) (-2236.021) (-2370.903) -- 0:27:13
525000 -- [-2220.527] (-2222.193) (-2376.675) (-2259.270) * [-2225.944] (-2221.449) (-2245.477) (-2376.927) -- 0:27:09
Average standard deviation of split frequencies: 0.018966
526000 -- (-2235.071) (-2254.503) (-2382.200) [-2218.300] * (-2211.111) [-2220.773] (-2234.034) (-2390.561) -- 0:27:06
527000 -- (-2254.336) (-2259.451) (-2381.446) [-2226.350] * (-2204.709) [-2230.798] (-2237.689) (-2373.784) -- 0:27:02
528000 -- (-2254.947) (-2227.929) (-2368.194) [-2218.886] * (-2213.879) (-2232.980) [-2225.518] (-2383.547) -- 0:26:59
529000 -- (-2262.821) [-2217.070] (-2351.263) (-2215.711) * [-2217.637] (-2220.864) (-2230.700) (-2388.833) -- 0:26:56
530000 -- (-2273.661) (-2212.769) (-2344.669) [-2224.283] * (-2230.026) [-2215.068] (-2232.548) (-2387.130) -- 0:26:53
Average standard deviation of split frequencies: 0.019116
531000 -- (-2241.762) (-2217.959) (-2365.817) [-2199.291] * (-2233.472) [-2217.229] (-2238.341) (-2388.888) -- 0:26:49
532000 -- (-2225.164) (-2220.854) (-2365.074) [-2208.594] * (-2275.010) [-2219.367] (-2230.717) (-2370.784) -- 0:26:46
533000 -- (-2246.339) (-2225.305) (-2371.193) [-2207.000] * (-2287.302) (-2240.941) [-2237.569] (-2371.747) -- 0:26:42
534000 -- (-2250.858) (-2233.924) (-2388.865) [-2207.534] * (-2248.796) (-2253.803) [-2216.972] (-2365.250) -- 0:26:38
535000 -- (-2269.493) (-2245.467) (-2391.489) [-2212.990] * (-2241.373) (-2236.337) [-2211.624] (-2404.402) -- 0:26:35
Average standard deviation of split frequencies: 0.019468
536000 -- (-2258.790) (-2238.543) (-2379.095) [-2214.692] * (-2227.133) (-2243.721) [-2210.759] (-2383.345) -- 0:26:31
537000 -- (-2245.875) (-2237.241) (-2355.065) [-2191.799] * (-2243.072) (-2238.070) [-2223.579] (-2370.684) -- 0:26:29
538000 -- (-2222.393) (-2246.739) (-2370.592) [-2200.332] * (-2246.712) (-2247.035) [-2222.003] (-2383.352) -- 0:26:25
539000 -- (-2227.869) (-2248.025) (-2384.635) [-2194.870] * (-2230.450) (-2243.432) [-2212.196] (-2358.177) -- 0:26:22
540000 -- (-2223.590) (-2270.886) (-2377.476) [-2203.325] * (-2248.429) (-2242.596) [-2215.195] (-2372.414) -- 0:26:18
Average standard deviation of split frequencies: 0.019892
541000 -- (-2253.757) (-2251.879) (-2385.329) [-2187.836] * (-2226.816) [-2233.177] (-2211.631) (-2363.510) -- 0:26:14
542000 -- (-2249.662) (-2223.764) (-2390.635) [-2202.445] * (-2223.076) (-2247.330) [-2215.104] (-2361.777) -- 0:26:10
543000 -- (-2241.378) (-2225.771) (-2379.117) [-2212.479] * (-2214.541) (-2242.601) [-2218.615] (-2371.567) -- 0:26:07
544000 -- (-2240.654) [-2207.942] (-2389.296) (-2220.515) * (-2242.243) (-2238.444) [-2229.688] (-2373.642) -- 0:26:04
545000 -- (-2229.292) [-2218.953] (-2354.169) (-2210.033) * (-2253.885) (-2222.165) [-2206.732] (-2353.850) -- 0:26:01
Average standard deviation of split frequencies: 0.020042
546000 -- (-2230.423) (-2243.158) (-2383.337) [-2193.404] * [-2209.044] (-2261.024) (-2218.277) (-2361.812) -- 0:25:57
547000 -- (-2248.722) (-2267.726) (-2386.165) [-2223.211] * [-2229.274] (-2245.177) (-2240.805) (-2381.242) -- 0:25:54
548000 -- (-2228.722) (-2262.890) (-2398.402) [-2204.773] * [-2232.939] (-2227.812) (-2233.700) (-2370.802) -- 0:25:50
549000 -- (-2240.370) (-2253.531) (-2374.370) [-2201.486] * [-2235.043] (-2233.286) (-2241.902) (-2376.431) -- 0:25:47
550000 -- (-2228.512) (-2241.534) (-2369.875) [-2211.474] * [-2231.406] (-2229.255) (-2222.131) (-2396.525) -- 0:25:43
Average standard deviation of split frequencies: 0.020131
551000 -- (-2219.085) (-2268.589) (-2371.021) [-2204.741] * (-2232.226) (-2235.825) [-2219.754] (-2383.119) -- 0:25:40
552000 -- [-2214.206] (-2248.199) (-2365.346) (-2225.429) * (-2250.158) (-2202.065) [-2218.404] (-2393.158) -- 0:25:37
553000 -- (-2213.053) (-2265.978) (-2358.199) [-2219.547] * (-2251.550) [-2212.520] (-2249.186) (-2381.245) -- 0:25:34
554000 -- [-2208.343] (-2247.023) (-2371.803) (-2215.546) * (-2248.355) [-2192.680] (-2264.925) (-2392.649) -- 0:25:30
555000 -- (-2218.398) (-2242.490) (-2363.116) [-2218.246] * (-2243.543) [-2212.566] (-2240.648) (-2377.697) -- 0:25:27
Average standard deviation of split frequencies: 0.020076
556000 -- [-2198.116] (-2227.440) (-2364.581) (-2232.568) * (-2251.467) [-2212.269] (-2233.156) (-2403.093) -- 0:25:23
557000 -- [-2187.863] (-2235.602) (-2369.941) (-2256.404) * (-2235.765) [-2228.417] (-2230.248) (-2375.645) -- 0:25:20
558000 -- [-2185.432] (-2232.389) (-2381.916) (-2245.569) * (-2241.527) [-2222.331] (-2214.205) (-2393.559) -- 0:25:16
559000 -- [-2214.092] (-2228.140) (-2397.009) (-2233.767) * (-2231.185) [-2229.131] (-2217.499) (-2381.746) -- 0:25:13
560000 -- [-2207.652] (-2229.917) (-2384.561) (-2244.454) * (-2219.578) (-2229.861) [-2189.161] (-2400.383) -- 0:25:10
Average standard deviation of split frequencies: 0.020048
561000 -- [-2201.479] (-2225.490) (-2403.437) (-2242.446) * [-2218.552] (-2262.234) (-2224.898) (-2420.046) -- 0:25:06
562000 -- [-2196.340] (-2247.553) (-2392.526) (-2229.146) * (-2228.026) (-2235.313) [-2232.958] (-2428.181) -- 0:25:02
563000 -- (-2204.097) [-2232.833] (-2412.087) (-2249.008) * [-2226.782] (-2231.037) (-2244.802) (-2398.162) -- 0:24:59
564000 -- (-2204.784) [-2226.509] (-2404.458) (-2226.657) * [-2244.051] (-2230.107) (-2241.057) (-2374.814) -- 0:24:55
565000 -- (-2237.610) (-2241.616) (-2416.475) [-2218.339] * (-2232.539) [-2211.381] (-2235.690) (-2388.547) -- 0:24:52
Average standard deviation of split frequencies: 0.019999
566000 -- (-2234.044) (-2246.597) (-2373.443) [-2209.148] * [-2217.715] (-2225.055) (-2231.407) (-2344.370) -- 0:24:49
567000 -- (-2214.018) (-2258.743) (-2401.422) [-2229.573] * (-2236.522) [-2208.500] (-2252.281) (-2365.641) -- 0:24:45
568000 -- [-2195.409] (-2246.203) (-2393.173) (-2215.441) * (-2255.672) [-2209.281] (-2222.782) (-2374.372) -- 0:24:41
569000 -- [-2213.389] (-2217.657) (-2390.261) (-2216.091) * (-2269.904) [-2221.152] (-2227.593) (-2356.090) -- 0:24:38
570000 -- [-2214.665] (-2217.846) (-2400.023) (-2230.296) * (-2244.151) [-2223.757] (-2238.818) (-2354.216) -- 0:24:34
Average standard deviation of split frequencies: 0.020662
571000 -- [-2231.132] (-2235.062) (-2409.814) (-2215.224) * (-2245.026) [-2208.691] (-2234.464) (-2357.952) -- 0:24:31
572000 -- [-2228.018] (-2262.615) (-2404.969) (-2212.384) * (-2233.376) (-2223.933) [-2236.777] (-2379.436) -- 0:24:28
573000 -- [-2202.354] (-2232.677) (-2409.246) (-2242.595) * (-2223.983) [-2214.147] (-2242.021) (-2385.434) -- 0:24:24
574000 -- (-2223.966) [-2226.282] (-2399.355) (-2225.767) * (-2232.492) [-2212.128] (-2234.172) (-2387.895) -- 0:24:21
575000 -- (-2235.032) [-2224.381] (-2372.689) (-2228.350) * (-2241.291) [-2219.863] (-2245.859) (-2375.009) -- 0:24:17
Average standard deviation of split frequencies: 0.021148
576000 -- (-2240.907) [-2237.871] (-2386.548) (-2255.310) * (-2236.151) [-2240.814] (-2241.437) (-2396.624) -- 0:24:13
577000 -- (-2225.410) [-2235.467] (-2372.564) (-2235.682) * (-2242.517) (-2220.167) [-2237.395] (-2371.586) -- 0:24:10
578000 -- (-2223.230) [-2229.175] (-2375.201) (-2256.611) * (-2226.149) (-2225.109) [-2233.360] (-2374.977) -- 0:24:07
579000 -- (-2233.894) [-2245.262] (-2391.385) (-2256.094) * (-2241.360) (-2227.205) [-2242.322] (-2358.234) -- 0:24:04
580000 -- [-2216.711] (-2250.806) (-2394.478) (-2235.166) * [-2208.543] (-2234.544) (-2220.188) (-2356.886) -- 0:24:00
Average standard deviation of split frequencies: 0.021318
581000 -- (-2223.879) [-2241.052] (-2395.132) (-2247.810) * (-2205.142) (-2239.663) [-2224.304] (-2354.061) -- 0:23:57
582000 -- (-2238.636) [-2211.225] (-2399.394) (-2244.330) * (-2217.890) (-2249.516) [-2216.291] (-2360.818) -- 0:23:53
583000 -- (-2221.960) [-2207.830] (-2426.002) (-2223.019) * (-2229.965) (-2218.982) [-2224.149] (-2385.314) -- 0:23:49
584000 -- (-2244.191) [-2209.656] (-2391.178) (-2221.972) * (-2244.973) (-2223.501) [-2210.046] (-2377.454) -- 0:23:46
585000 -- (-2238.309) (-2207.178) (-2368.593) [-2206.282] * (-2226.084) (-2248.187) [-2218.073] (-2392.439) -- 0:23:43
Average standard deviation of split frequencies: 0.021288
586000 -- (-2214.784) [-2224.395] (-2380.838) (-2223.490) * (-2223.621) [-2235.215] (-2247.940) (-2393.174) -- 0:23:40
587000 -- [-2209.602] (-2223.020) (-2373.408) (-2235.414) * (-2205.021) [-2228.244] (-2246.369) (-2361.063) -- 0:23:36
588000 -- (-2229.111) [-2218.655] (-2382.278) (-2239.510) * [-2224.008] (-2218.338) (-2246.225) (-2383.412) -- 0:23:33
589000 -- (-2248.146) [-2219.638] (-2377.595) (-2217.660) * (-2224.084) [-2214.767] (-2238.927) (-2366.904) -- 0:23:29
590000 -- (-2228.350) (-2217.306) (-2369.441) [-2203.564] * (-2241.789) [-2205.580] (-2239.365) (-2366.882) -- 0:23:26
Average standard deviation of split frequencies: 0.021273
591000 -- (-2230.095) (-2199.746) (-2356.707) [-2214.933] * (-2253.914) [-2226.755] (-2232.181) (-2366.860) -- 0:23:22
592000 -- (-2238.677) [-2209.003] (-2375.243) (-2237.407) * (-2243.792) [-2212.157] (-2214.458) (-2361.237) -- 0:23:19
593000 -- (-2242.344) [-2215.174] (-2395.929) (-2244.283) * (-2225.354) [-2221.635] (-2234.260) (-2396.922) -- 0:23:15
594000 -- (-2238.748) [-2214.064] (-2401.581) (-2222.761) * (-2210.522) [-2214.391] (-2260.555) (-2385.232) -- 0:23:12
595000 -- (-2254.765) (-2224.901) (-2378.500) [-2209.575] * (-2198.172) [-2216.949] (-2254.698) (-2368.970) -- 0:23:08
Average standard deviation of split frequencies: 0.021242
596000 -- (-2250.063) (-2232.400) (-2389.213) [-2225.441] * (-2211.963) [-2212.504] (-2255.445) (-2394.389) -- 0:23:05
597000 -- (-2231.429) (-2225.229) (-2387.238) [-2239.559] * (-2248.177) [-2219.844] (-2272.407) (-2370.196) -- 0:23:01
598000 -- [-2219.105] (-2227.884) (-2405.836) (-2251.335) * (-2223.419) [-2223.308] (-2234.851) (-2394.755) -- 0:22:58
599000 -- (-2227.699) (-2225.066) (-2387.689) [-2245.520] * [-2206.633] (-2228.168) (-2244.884) (-2376.916) -- 0:22:55
600000 -- (-2223.892) [-2213.232] (-2388.713) (-2236.128) * [-2206.626] (-2224.200) (-2241.917) (-2361.544) -- 0:22:51
Average standard deviation of split frequencies: 0.021420
601000 -- (-2235.186) [-2224.613] (-2399.990) (-2246.212) * [-2216.257] (-2220.564) (-2219.230) (-2378.736) -- 0:22:48
602000 -- (-2220.072) [-2217.678] (-2389.211) (-2261.332) * (-2232.536) (-2230.402) [-2218.812] (-2386.400) -- 0:22:44
603000 -- (-2232.867) [-2213.404] (-2404.006) (-2227.512) * (-2256.014) [-2230.100] (-2232.720) (-2373.286) -- 0:22:41
604000 -- [-2216.997] (-2237.559) (-2382.666) (-2228.384) * (-2240.010) (-2225.009) [-2201.658] (-2377.911) -- 0:22:37
605000 -- [-2201.198] (-2213.396) (-2400.846) (-2251.867) * (-2239.237) (-2221.815) [-2209.692] (-2367.848) -- 0:22:34
Average standard deviation of split frequencies: 0.021747
606000 -- (-2206.920) [-2196.717] (-2379.858) (-2272.011) * (-2233.968) [-2229.349] (-2211.218) (-2368.165) -- 0:22:31
607000 -- (-2220.225) [-2200.573] (-2392.542) (-2262.731) * (-2221.902) [-2221.350] (-2212.695) (-2381.276) -- 0:22:27
608000 -- (-2213.827) [-2200.231] (-2395.155) (-2271.749) * [-2220.032] (-2225.050) (-2234.445) (-2372.794) -- 0:22:24
609000 -- (-2223.091) [-2205.309] (-2374.485) (-2256.994) * (-2213.829) [-2213.150] (-2249.376) (-2390.428) -- 0:22:21
610000 -- [-2219.565] (-2217.933) (-2394.521) (-2270.692) * (-2215.067) [-2214.304] (-2234.455) (-2374.763) -- 0:22:17
Average standard deviation of split frequencies: 0.021581
611000 -- (-2219.241) [-2232.779] (-2395.958) (-2252.621) * (-2205.840) [-2217.700] (-2245.657) (-2364.763) -- 0:22:13
612000 -- [-2227.840] (-2240.863) (-2411.556) (-2243.706) * (-2229.629) [-2208.959] (-2229.985) (-2375.296) -- 0:22:10
613000 -- [-2233.558] (-2248.342) (-2387.388) (-2251.216) * (-2237.039) [-2220.690] (-2214.575) (-2381.783) -- 0:22:06
614000 -- (-2216.021) [-2214.435] (-2396.229) (-2240.104) * (-2234.597) [-2226.418] (-2228.132) (-2362.514) -- 0:22:03
615000 -- (-2220.018) [-2202.669] (-2415.692) (-2234.880) * (-2227.904) [-2222.889] (-2244.860) (-2401.835) -- 0:21:59
Average standard deviation of split frequencies: 0.021689
616000 -- [-2204.986] (-2211.601) (-2388.901) (-2248.478) * [-2209.828] (-2209.431) (-2252.578) (-2394.133) -- 0:21:55
617000 -- (-2225.107) [-2216.007] (-2367.444) (-2224.650) * (-2212.302) [-2203.530] (-2255.307) (-2355.180) -- 0:21:52
618000 -- (-2214.984) [-2214.521] (-2387.094) (-2237.092) * [-2209.166] (-2229.170) (-2249.766) (-2373.896) -- 0:21:49
619000 -- (-2228.037) [-2211.586] (-2378.733) (-2243.064) * [-2199.515] (-2254.636) (-2243.941) (-2374.138) -- 0:21:46
620000 -- (-2233.195) [-2208.100] (-2370.358) (-2229.296) * [-2220.606] (-2230.232) (-2227.872) (-2367.509) -- 0:21:42
Average standard deviation of split frequencies: 0.022002
621000 -- (-2232.520) [-2211.717] (-2387.701) (-2223.938) * (-2241.531) (-2227.473) [-2216.507] (-2359.244) -- 0:21:38
622000 -- (-2258.041) [-2215.461] (-2397.651) (-2247.213) * (-2228.039) (-2245.492) [-2204.450] (-2380.430) -- 0:21:35
623000 -- (-2228.682) [-2212.371] (-2381.523) (-2257.020) * (-2246.062) (-2230.728) [-2202.255] (-2367.027) -- 0:21:31
624000 -- (-2231.239) [-2207.524] (-2396.397) (-2254.345) * (-2246.690) (-2219.740) [-2188.438] (-2376.856) -- 0:21:28
625000 -- (-2259.013) [-2200.765] (-2392.020) (-2250.017) * (-2240.712) (-2232.332) [-2175.804] (-2355.643) -- 0:21:25
Average standard deviation of split frequencies: 0.022110
626000 -- (-2294.314) [-2184.678] (-2377.689) (-2231.103) * (-2260.704) (-2216.062) [-2181.285] (-2391.589) -- 0:21:21
627000 -- (-2249.257) [-2184.227] (-2386.197) (-2225.216) * (-2236.023) (-2228.648) [-2203.601] (-2394.186) -- 0:21:17
628000 -- (-2257.012) [-2186.928] (-2390.041) (-2220.534) * (-2255.765) (-2242.391) [-2201.943] (-2373.707) -- 0:21:14
629000 -- (-2228.146) [-2195.433] (-2377.331) (-2214.801) * (-2223.024) (-2254.604) [-2194.724] (-2374.597) -- 0:21:11
630000 -- (-2232.195) [-2193.814] (-2364.567) (-2211.870) * (-2232.571) (-2254.571) [-2193.019] (-2370.858) -- 0:21:07
Average standard deviation of split frequencies: 0.022619
631000 -- (-2242.679) [-2190.738] (-2376.314) (-2225.666) * (-2230.865) (-2247.884) [-2192.851] (-2374.023) -- 0:21:04
632000 -- (-2247.968) [-2209.195] (-2359.801) (-2230.275) * (-2232.372) (-2241.189) [-2196.903] (-2370.041) -- 0:21:01
633000 -- (-2240.414) (-2205.456) (-2381.744) [-2233.785] * (-2272.346) (-2222.211) [-2210.024] (-2370.104) -- 0:20:57
634000 -- (-2239.458) [-2221.045] (-2381.086) (-2223.970) * (-2245.380) (-2220.917) [-2201.411] (-2377.991) -- 0:20:54
635000 -- (-2252.277) [-2215.615] (-2376.037) (-2210.490) * (-2211.607) (-2258.765) [-2206.807] (-2382.364) -- 0:20:50
Average standard deviation of split frequencies: 0.022968
636000 -- (-2239.026) [-2214.278] (-2368.736) (-2238.988) * (-2229.060) (-2224.793) [-2213.401] (-2388.004) -- 0:20:47
637000 -- (-2256.270) [-2194.711] (-2375.684) (-2241.483) * (-2261.788) (-2237.542) [-2208.380] (-2397.215) -- 0:20:44
638000 -- (-2244.346) [-2186.150] (-2383.957) (-2264.939) * (-2244.681) (-2238.317) [-2208.515] (-2379.712) -- 0:20:40
639000 -- (-2244.970) [-2226.041] (-2374.858) (-2239.878) * (-2253.603) [-2226.883] (-2206.747) (-2386.402) -- 0:20:36
640000 -- (-2241.921) [-2222.298] (-2404.036) (-2266.454) * (-2225.778) (-2228.951) [-2215.252] (-2416.999) -- 0:20:33
Average standard deviation of split frequencies: 0.023363
641000 -- (-2257.776) [-2213.161] (-2392.487) (-2243.721) * (-2236.469) (-2230.747) [-2210.400] (-2422.369) -- 0:20:29
642000 -- (-2249.265) [-2218.064] (-2384.768) (-2255.411) * (-2235.127) (-2264.303) [-2199.946] (-2397.364) -- 0:20:26
643000 -- (-2253.896) [-2229.268] (-2384.566) (-2229.004) * (-2248.264) (-2241.734) [-2205.965] (-2390.596) -- 0:20:23
644000 -- (-2279.042) [-2234.088] (-2386.053) (-2215.643) * (-2232.573) (-2237.755) [-2215.339] (-2370.192) -- 0:20:19
645000 -- (-2253.559) (-2250.758) (-2391.454) [-2196.251] * (-2253.274) (-2258.354) [-2196.498] (-2379.167) -- 0:20:15
Average standard deviation of split frequencies: 0.023433
646000 -- (-2280.902) (-2245.697) (-2374.107) [-2215.200] * (-2260.935) (-2236.223) [-2203.972] (-2385.780) -- 0:20:12
647000 -- (-2256.072) [-2239.361] (-2370.482) (-2204.908) * (-2246.748) (-2232.368) [-2212.735] (-2389.523) -- 0:20:09
648000 -- (-2250.826) (-2228.458) (-2402.188) [-2205.107] * [-2254.274] (-2234.853) (-2217.717) (-2379.850) -- 0:20:05
649000 -- (-2246.357) (-2221.805) (-2400.527) [-2208.423] * [-2232.829] (-2243.240) (-2216.549) (-2356.421) -- 0:20:02
650000 -- (-2234.911) (-2205.062) (-2410.224) [-2202.568] * [-2222.575] (-2220.397) (-2205.602) (-2356.024) -- 0:19:58
Average standard deviation of split frequencies: 0.023134
651000 -- (-2216.836) [-2210.032] (-2384.337) (-2233.002) * [-2222.391] (-2238.953) (-2206.637) (-2356.282) -- 0:19:55
652000 -- (-2222.208) [-2226.443] (-2381.236) (-2218.645) * [-2226.702] (-2255.778) (-2222.999) (-2373.964) -- 0:19:51
653000 -- (-2222.149) [-2213.646] (-2360.293) (-2207.177) * (-2232.943) (-2234.532) [-2216.269] (-2382.709) -- 0:19:48
654000 -- (-2253.344) [-2216.235] (-2364.775) (-2223.756) * [-2203.752] (-2241.969) (-2216.361) (-2385.786) -- 0:19:45
655000 -- (-2241.664) (-2219.184) (-2366.516) [-2208.066] * [-2189.011] (-2249.232) (-2224.539) (-2364.659) -- 0:19:41
Average standard deviation of split frequencies: 0.023041
656000 -- (-2227.688) (-2210.853) (-2383.253) [-2212.249] * [-2200.669] (-2238.027) (-2244.232) (-2367.772) -- 0:19:38
657000 -- [-2205.892] (-2213.922) (-2366.871) (-2235.199) * [-2205.511] (-2235.236) (-2229.083) (-2375.121) -- 0:19:34
658000 -- [-2210.098] (-2223.765) (-2375.845) (-2239.263) * [-2197.762] (-2232.694) (-2265.185) (-2375.337) -- 0:19:31
659000 -- (-2224.607) [-2210.332] (-2383.711) (-2229.442) * [-2212.645] (-2258.835) (-2233.791) (-2383.321) -- 0:19:27
660000 -- (-2244.974) [-2197.978] (-2395.028) (-2225.429) * [-2212.655] (-2263.801) (-2223.161) (-2375.831) -- 0:19:24
Average standard deviation of split frequencies: 0.022945
661000 -- (-2225.959) [-2193.221] (-2395.785) (-2242.816) * [-2224.142] (-2239.868) (-2203.212) (-2368.454) -- 0:19:21
662000 -- (-2246.763) [-2192.371] (-2389.848) (-2214.193) * (-2237.414) (-2226.302) [-2208.414] (-2375.272) -- 0:19:17
663000 -- (-2247.199) [-2204.110] (-2396.012) (-2232.004) * [-2230.716] (-2243.103) (-2205.479) (-2389.271) -- 0:19:14
664000 -- (-2275.894) [-2210.703] (-2383.860) (-2228.431) * [-2222.968] (-2257.266) (-2207.859) (-2389.979) -- 0:19:10
665000 -- (-2272.668) [-2209.072] (-2385.963) (-2226.294) * (-2226.596) (-2264.573) [-2235.237] (-2401.184) -- 0:19:07
Average standard deviation of split frequencies: 0.023053
666000 -- (-2273.507) [-2216.488] (-2384.262) (-2219.322) * (-2215.567) (-2269.588) [-2230.983] (-2366.397) -- 0:19:03
667000 -- (-2264.217) (-2212.724) (-2371.263) [-2206.085] * [-2200.962] (-2241.219) (-2265.195) (-2377.831) -- 0:19:00
668000 -- (-2243.806) (-2220.409) (-2395.233) [-2193.609] * [-2204.539] (-2219.459) (-2244.617) (-2399.414) -- 0:18:56
669000 -- (-2255.869) (-2222.889) (-2395.571) [-2218.916] * [-2203.302] (-2271.876) (-2249.527) (-2413.603) -- 0:18:53
670000 -- (-2257.903) (-2212.866) (-2373.796) [-2212.048] * [-2222.249] (-2261.989) (-2222.567) (-2395.129) -- 0:18:49
Average standard deviation of split frequencies: 0.022563
671000 -- (-2238.450) [-2215.389] (-2366.931) (-2216.330) * (-2221.252) (-2246.981) [-2226.495] (-2391.505) -- 0:18:46
672000 -- (-2252.357) [-2201.127] (-2362.390) (-2209.662) * (-2213.120) (-2283.168) [-2209.948] (-2402.314) -- 0:18:43
673000 -- (-2248.264) [-2203.584] (-2357.702) (-2222.487) * (-2225.769) (-2278.536) [-2199.493] (-2375.290) -- 0:18:39
674000 -- (-2239.989) [-2195.813] (-2383.232) (-2238.119) * (-2234.878) (-2246.571) [-2210.889] (-2389.880) -- 0:18:36
675000 -- (-2231.907) [-2193.942] (-2361.006) (-2230.699) * (-2236.162) (-2224.120) [-2209.363] (-2382.966) -- 0:18:32
Average standard deviation of split frequencies: 0.022880
676000 -- (-2215.314) [-2207.042] (-2344.121) (-2235.117) * (-2260.979) (-2233.797) [-2198.174] (-2391.346) -- 0:18:29
677000 -- (-2224.446) [-2209.908] (-2350.407) (-2238.210) * (-2243.000) (-2234.690) [-2200.235] (-2386.785) -- 0:18:25
678000 -- (-2223.875) [-2198.995] (-2382.988) (-2232.518) * (-2253.517) (-2213.472) [-2207.532] (-2379.395) -- 0:18:22
679000 -- (-2260.503) [-2192.181] (-2369.708) (-2220.795) * (-2248.126) (-2237.230) [-2215.234] (-2403.814) -- 0:18:19
680000 -- (-2267.046) [-2194.495] (-2409.317) (-2224.142) * (-2264.905) [-2217.375] (-2219.275) (-2378.780) -- 0:18:16
Average standard deviation of split frequencies: 0.023116
681000 -- (-2237.374) [-2207.611] (-2376.442) (-2244.261) * (-2244.335) [-2223.634] (-2238.710) (-2370.137) -- 0:18:12
682000 -- (-2225.052) [-2205.515] (-2378.249) (-2250.568) * (-2254.240) [-2230.852] (-2227.618) (-2381.394) -- 0:18:09
683000 -- (-2241.513) [-2182.904] (-2375.184) (-2239.318) * (-2261.244) (-2231.312) [-2223.081] (-2374.190) -- 0:18:05
684000 -- (-2249.342) [-2179.720] (-2384.012) (-2233.177) * (-2249.152) (-2237.598) [-2233.582] (-2368.609) -- 0:18:02
685000 -- (-2256.950) [-2195.724] (-2375.530) (-2225.343) * (-2267.330) [-2211.699] (-2223.435) (-2379.776) -- 0:17:58
Average standard deviation of split frequencies: 0.023287
686000 -- (-2245.948) [-2210.249] (-2380.424) (-2245.083) * (-2235.191) (-2213.022) [-2220.186] (-2372.656) -- 0:17:55
687000 -- (-2238.308) [-2230.633] (-2385.158) (-2241.931) * (-2250.714) (-2222.176) [-2201.609] (-2384.007) -- 0:17:52
688000 -- (-2223.294) (-2250.596) (-2378.991) [-2229.677] * (-2229.671) (-2221.364) [-2212.226] (-2370.813) -- 0:17:48
689000 -- (-2223.060) (-2237.534) (-2373.244) [-2229.030] * (-2245.246) (-2201.786) [-2229.106] (-2373.856) -- 0:17:45
690000 -- (-2229.271) [-2225.924] (-2382.553) (-2251.911) * (-2223.003) [-2215.114] (-2238.142) (-2378.778) -- 0:17:42
Average standard deviation of split frequencies: 0.023723
691000 -- (-2215.695) [-2218.805] (-2359.293) (-2242.237) * (-2234.306) [-2188.697] (-2234.129) (-2383.065) -- 0:17:38
692000 -- (-2229.238) [-2220.087] (-2378.274) (-2274.890) * (-2245.488) [-2200.697] (-2232.084) (-2375.853) -- 0:17:35
693000 -- [-2237.383] (-2221.346) (-2395.721) (-2262.419) * (-2232.648) [-2232.104] (-2230.334) (-2364.619) -- 0:17:32
694000 -- [-2226.228] (-2220.265) (-2365.646) (-2280.337) * (-2225.683) [-2229.454] (-2221.108) (-2379.087) -- 0:17:28
695000 -- (-2249.108) [-2214.622] (-2402.205) (-2261.140) * (-2252.326) (-2215.453) [-2230.556] (-2379.278) -- 0:17:24
Average standard deviation of split frequencies: 0.023862
696000 -- (-2229.984) [-2213.584] (-2393.131) (-2226.898) * (-2260.050) [-2215.111] (-2217.163) (-2366.145) -- 0:17:21
697000 -- (-2216.755) [-2204.595] (-2385.724) (-2249.804) * (-2249.574) [-2203.197] (-2228.122) (-2367.260) -- 0:17:18
698000 -- (-2226.928) [-2203.989] (-2373.167) (-2244.552) * (-2242.499) [-2203.088] (-2243.667) (-2369.691) -- 0:17:14
699000 -- [-2225.684] (-2225.724) (-2393.432) (-2258.759) * (-2236.376) [-2193.997] (-2234.606) (-2373.604) -- 0:17:11
700000 -- [-2219.515] (-2216.579) (-2388.588) (-2235.866) * (-2225.919) [-2207.394] (-2247.242) (-2368.617) -- 0:17:07
Average standard deviation of split frequencies: 0.023652
701000 -- (-2228.836) [-2215.244] (-2383.225) (-2237.887) * (-2237.781) [-2232.030] (-2253.040) (-2361.916) -- 0:17:04
702000 -- (-2218.729) [-2205.031] (-2390.350) (-2220.097) * [-2230.854] (-2237.511) (-2229.251) (-2376.212) -- 0:17:00
703000 -- [-2199.224] (-2225.121) (-2363.303) (-2237.964) * [-2215.054] (-2250.512) (-2222.565) (-2349.702) -- 0:16:57
704000 -- [-2205.536] (-2256.227) (-2421.402) (-2220.610) * [-2208.844] (-2235.260) (-2233.058) (-2340.280) -- 0:16:54
705000 -- [-2209.212] (-2228.887) (-2396.876) (-2228.441) * [-2218.870] (-2227.463) (-2267.921) (-2365.883) -- 0:16:50
Average standard deviation of split frequencies: 0.023911
706000 -- (-2233.406) (-2240.369) (-2380.201) [-2231.894] * [-2205.442] (-2218.193) (-2255.708) (-2370.228) -- 0:16:47
707000 -- [-2221.587] (-2256.301) (-2378.308) (-2240.236) * [-2222.353] (-2225.942) (-2244.537) (-2386.851) -- 0:16:43
708000 -- (-2209.142) (-2240.896) (-2374.451) [-2222.536] * (-2225.017) [-2216.754] (-2222.625) (-2356.311) -- 0:16:40
709000 -- (-2218.447) (-2234.676) (-2373.243) [-2210.571] * (-2242.445) [-2218.440] (-2206.941) (-2371.797) -- 0:16:36
710000 -- [-2230.768] (-2248.031) (-2360.487) (-2237.198) * (-2218.548) [-2220.593] (-2205.585) (-2362.158) -- 0:16:33
Average standard deviation of split frequencies: 0.023896
711000 -- (-2234.238) (-2247.325) (-2358.836) [-2239.862] * (-2253.586) (-2213.557) [-2213.666] (-2351.255) -- 0:16:30
712000 -- (-2216.844) (-2228.672) (-2348.260) [-2223.068] * (-2257.817) [-2211.424] (-2220.082) (-2373.177) -- 0:16:26
713000 -- (-2209.402) (-2236.288) (-2343.004) [-2218.431] * (-2239.394) (-2238.171) [-2215.933] (-2383.477) -- 0:16:23
714000 -- (-2213.825) (-2259.324) (-2361.660) [-2199.645] * (-2241.915) [-2231.825] (-2222.260) (-2392.266) -- 0:16:20
715000 -- (-2229.259) (-2251.950) (-2380.686) [-2223.497] * (-2237.183) (-2247.819) [-2215.386] (-2386.220) -- 0:16:16
Average standard deviation of split frequencies: 0.023763
716000 -- [-2224.597] (-2251.665) (-2389.274) (-2217.521) * (-2259.882) (-2216.153) [-2214.125] (-2369.098) -- 0:16:13
717000 -- [-2225.119] (-2245.948) (-2398.437) (-2230.437) * (-2281.210) [-2222.112] (-2214.065) (-2381.718) -- 0:16:09
718000 -- (-2202.566) (-2256.879) (-2404.638) [-2243.126] * (-2251.015) [-2207.529] (-2243.681) (-2372.051) -- 0:16:06
719000 -- (-2230.579) (-2252.675) (-2403.379) [-2227.013] * (-2238.745) [-2212.529] (-2262.879) (-2361.619) -- 0:16:02
720000 -- (-2249.260) (-2243.064) (-2391.176) [-2218.657] * (-2255.406) [-2212.730] (-2257.592) (-2393.471) -- 0:15:59
Average standard deviation of split frequencies: 0.023427
721000 -- (-2240.449) (-2225.764) (-2385.553) [-2214.464] * (-2245.440) (-2237.890) [-2216.968] (-2376.558) -- 0:15:56
722000 -- (-2226.654) (-2255.283) (-2372.173) [-2207.688] * [-2204.668] (-2244.349) (-2262.464) (-2397.529) -- 0:15:52
723000 -- (-2215.816) (-2241.172) (-2371.773) [-2206.282] * [-2225.422] (-2234.957) (-2234.063) (-2376.956) -- 0:15:49
724000 -- (-2202.945) (-2238.274) (-2398.172) [-2202.571] * [-2232.118] (-2235.192) (-2224.470) (-2382.107) -- 0:15:45
725000 -- (-2213.934) (-2247.542) (-2386.864) [-2202.663] * [-2241.892] (-2233.462) (-2247.353) (-2392.803) -- 0:15:42
Average standard deviation of split frequencies: 0.023101
726000 -- (-2218.157) (-2245.963) (-2389.904) [-2212.557] * [-2234.767] (-2251.288) (-2221.944) (-2372.935) -- 0:15:38
727000 -- (-2207.646) (-2249.590) (-2388.627) [-2228.167] * (-2249.420) (-2264.071) [-2224.732] (-2380.143) -- 0:15:35
728000 -- [-2208.376] (-2249.109) (-2388.336) (-2235.153) * [-2221.503] (-2273.209) (-2243.075) (-2371.668) -- 0:15:32
729000 -- [-2218.975] (-2238.276) (-2383.876) (-2227.178) * [-2222.004] (-2252.235) (-2229.579) (-2395.198) -- 0:15:28
730000 -- [-2214.404] (-2241.033) (-2363.506) (-2250.331) * (-2229.057) [-2218.802] (-2238.546) (-2399.712) -- 0:15:25
Average standard deviation of split frequencies: 0.022871
731000 -- [-2201.232] (-2252.604) (-2370.417) (-2234.599) * [-2203.661] (-2232.163) (-2235.509) (-2402.313) -- 0:15:22
732000 -- [-2203.372] (-2232.054) (-2382.129) (-2237.048) * (-2218.513) [-2228.319] (-2241.065) (-2405.195) -- 0:15:18
733000 -- [-2211.168] (-2221.150) (-2348.384) (-2252.089) * (-2231.736) [-2230.941] (-2238.529) (-2398.514) -- 0:15:15
734000 -- (-2234.991) [-2213.505] (-2373.545) (-2287.360) * (-2240.048) [-2208.837] (-2239.551) (-2404.445) -- 0:15:11
735000 -- [-2215.970] (-2211.415) (-2377.025) (-2284.605) * (-2249.229) [-2214.079] (-2246.802) (-2394.245) -- 0:15:08
Average standard deviation of split frequencies: 0.022405
736000 -- [-2204.331] (-2251.091) (-2368.314) (-2267.235) * (-2252.765) (-2231.497) [-2226.798] (-2387.214) -- 0:15:04
737000 -- [-2218.916] (-2277.887) (-2378.414) (-2249.971) * (-2224.846) [-2226.650] (-2210.584) (-2386.996) -- 0:15:01
738000 -- [-2204.176] (-2252.187) (-2357.267) (-2253.270) * (-2227.288) [-2225.926] (-2216.333) (-2391.434) -- 0:14:57
739000 -- [-2219.205] (-2268.179) (-2367.495) (-2241.858) * (-2248.654) (-2236.377) [-2226.746] (-2381.528) -- 0:14:54
740000 -- [-2205.611] (-2275.727) (-2373.159) (-2231.658) * (-2250.141) (-2250.855) [-2229.001] (-2393.046) -- 0:14:51
Average standard deviation of split frequencies: 0.022132
741000 -- [-2205.802] (-2280.250) (-2376.975) (-2247.628) * (-2263.275) (-2251.558) [-2226.581] (-2385.247) -- 0:14:47
742000 -- [-2225.930] (-2275.853) (-2386.179) (-2228.408) * (-2236.685) (-2251.681) [-2225.244] (-2380.587) -- 0:14:44
743000 -- [-2210.533] (-2284.580) (-2395.871) (-2248.478) * (-2213.168) (-2261.051) [-2210.566] (-2382.007) -- 0:14:40
744000 -- [-2206.950] (-2268.761) (-2389.812) (-2238.638) * (-2211.774) (-2259.029) [-2213.786] (-2383.059) -- 0:14:37
745000 -- [-2191.348] (-2249.989) (-2389.026) (-2253.624) * [-2190.376] (-2263.187) (-2228.723) (-2385.321) -- 0:14:34
Average standard deviation of split frequencies: 0.022058
746000 -- [-2190.876] (-2247.476) (-2365.134) (-2240.268) * [-2205.489] (-2271.129) (-2247.085) (-2378.072) -- 0:14:30
747000 -- (-2199.277) (-2237.086) (-2359.092) [-2232.876] * [-2204.517] (-2280.607) (-2247.687) (-2369.112) -- 0:14:27
748000 -- [-2208.461] (-2226.935) (-2372.347) (-2230.456) * [-2221.346] (-2252.053) (-2233.519) (-2356.780) -- 0:14:23
749000 -- (-2216.450) (-2240.733) (-2381.097) [-2205.066] * [-2218.517] (-2242.869) (-2246.488) (-2373.516) -- 0:14:20
750000 -- (-2231.300) (-2252.010) (-2374.175) [-2199.070] * [-2215.991] (-2226.298) (-2248.652) (-2381.196) -- 0:14:17
Average standard deviation of split frequencies: 0.021648
751000 -- (-2232.424) (-2245.751) (-2392.634) [-2202.917] * (-2223.865) [-2221.008] (-2250.924) (-2390.428) -- 0:14:13
752000 -- (-2233.915) (-2273.209) (-2370.609) [-2201.777] * (-2231.360) [-2201.648] (-2251.485) (-2403.975) -- 0:14:09
753000 -- (-2241.021) (-2259.916) (-2375.326) [-2209.574] * (-2211.605) [-2192.297] (-2257.605) (-2397.666) -- 0:14:06
754000 -- (-2238.752) (-2241.248) (-2382.885) [-2198.657] * (-2210.813) [-2205.742] (-2251.348) (-2359.861) -- 0:14:03
755000 -- (-2221.698) (-2232.134) (-2385.236) [-2220.948] * (-2213.780) [-2209.253] (-2233.830) (-2364.663) -- 0:13:59
Average standard deviation of split frequencies: 0.021618
756000 -- (-2218.360) (-2237.216) (-2371.021) [-2216.772] * (-2224.127) [-2217.695] (-2240.492) (-2372.937) -- 0:13:56
757000 -- [-2199.563] (-2239.016) (-2375.920) (-2233.110) * (-2254.581) [-2206.593] (-2235.903) (-2377.550) -- 0:13:53
758000 -- [-2193.553] (-2229.357) (-2374.932) (-2230.033) * (-2236.735) [-2212.537] (-2256.519) (-2378.570) -- 0:13:49
759000 -- [-2196.682] (-2233.422) (-2384.095) (-2242.442) * (-2228.130) [-2206.475] (-2259.060) (-2385.111) -- 0:13:46
760000 -- [-2194.738] (-2235.074) (-2375.199) (-2240.403) * (-2240.340) [-2208.626] (-2267.765) (-2382.646) -- 0:13:42
Average standard deviation of split frequencies: 0.021559
761000 -- [-2192.435] (-2260.753) (-2363.195) (-2256.679) * [-2217.315] (-2220.061) (-2252.953) (-2370.520) -- 0:13:39
762000 -- [-2223.691] (-2247.962) (-2360.742) (-2255.135) * (-2219.799) (-2219.926) [-2224.776] (-2381.698) -- 0:13:35
763000 -- (-2219.611) [-2226.465] (-2383.697) (-2281.967) * (-2212.027) (-2218.866) [-2215.381] (-2378.865) -- 0:13:32
764000 -- [-2210.899] (-2232.403) (-2379.218) (-2258.794) * [-2203.307] (-2240.604) (-2223.332) (-2377.773) -- 0:13:29
765000 -- [-2206.398] (-2261.873) (-2381.516) (-2243.234) * [-2188.953] (-2246.085) (-2225.259) (-2352.295) -- 0:13:25
Average standard deviation of split frequencies: 0.021174
766000 -- [-2204.390] (-2279.083) (-2367.542) (-2241.121) * [-2197.141] (-2247.661) (-2239.442) (-2366.715) -- 0:13:22
767000 -- [-2202.629] (-2248.139) (-2385.501) (-2231.798) * [-2201.382] (-2253.524) (-2248.162) (-2381.108) -- 0:13:18
768000 -- [-2205.414] (-2262.748) (-2376.812) (-2226.203) * [-2211.083] (-2253.703) (-2258.503) (-2382.758) -- 0:13:15
769000 -- [-2211.703] (-2240.131) (-2345.885) (-2217.478) * [-2204.022] (-2234.886) (-2240.465) (-2376.615) -- 0:13:11
770000 -- [-2205.175] (-2243.676) (-2362.639) (-2226.224) * [-2216.499] (-2253.743) (-2235.081) (-2379.110) -- 0:13:08
Average standard deviation of split frequencies: 0.020743
771000 -- (-2217.683) (-2246.352) (-2358.704) [-2213.565] * [-2215.245] (-2248.562) (-2235.105) (-2361.158) -- 0:13:05
772000 -- (-2240.707) (-2228.217) (-2385.474) [-2221.304] * [-2218.077] (-2227.118) (-2230.102) (-2367.523) -- 0:13:01
773000 -- (-2229.102) (-2227.469) (-2371.864) [-2213.294] * [-2205.072] (-2237.160) (-2238.903) (-2357.339) -- 0:12:57
774000 -- (-2243.849) (-2244.851) (-2334.760) [-2193.473] * [-2195.252] (-2273.475) (-2211.268) (-2374.090) -- 0:12:54
775000 -- (-2230.272) (-2243.740) (-2365.381) [-2211.112] * (-2204.229) (-2251.411) [-2215.351] (-2356.551) -- 0:12:51
Average standard deviation of split frequencies: 0.020697
776000 -- (-2250.442) (-2234.643) (-2368.805) [-2215.222] * [-2202.346] (-2245.408) (-2238.609) (-2347.024) -- 0:12:47
777000 -- (-2226.530) (-2218.349) (-2364.527) [-2217.956] * (-2221.309) (-2235.988) [-2202.467] (-2373.959) -- 0:12:44
778000 -- (-2234.984) [-2203.632] (-2354.149) (-2242.578) * [-2239.103] (-2247.474) (-2213.981) (-2371.996) -- 0:12:41
779000 -- (-2245.199) [-2219.118] (-2378.883) (-2230.506) * (-2234.758) (-2265.570) [-2218.403] (-2392.780) -- 0:12:37
780000 -- (-2255.090) (-2229.741) (-2387.992) [-2224.843] * (-2245.747) (-2254.534) [-2204.886] (-2379.292) -- 0:12:34
Average standard deviation of split frequencies: 0.020442
781000 -- (-2223.548) (-2214.826) (-2386.520) [-2223.378] * (-2219.488) (-2234.897) [-2200.663] (-2388.355) -- 0:12:30
782000 -- (-2245.189) [-2197.132] (-2384.879) (-2233.151) * (-2214.938) (-2256.873) [-2204.454] (-2397.239) -- 0:12:27
783000 -- (-2218.435) [-2198.311] (-2365.879) (-2241.437) * (-2215.746) (-2249.623) [-2187.444] (-2374.104) -- 0:12:24
784000 -- (-2209.089) [-2219.151] (-2365.867) (-2229.673) * (-2228.408) (-2228.716) [-2176.951] (-2369.201) -- 0:12:20
785000 -- (-2217.128) [-2216.766] (-2369.075) (-2232.894) * (-2232.292) (-2241.793) [-2191.235] (-2387.024) -- 0:12:17
Average standard deviation of split frequencies: 0.020350
786000 -- (-2214.622) [-2205.168] (-2358.717) (-2236.386) * (-2232.976) (-2230.574) [-2214.291] (-2382.182) -- 0:12:14
787000 -- (-2218.556) [-2210.286] (-2373.467) (-2251.916) * (-2261.065) (-2219.929) [-2210.809] (-2391.663) -- 0:12:10
788000 -- (-2229.828) [-2214.715] (-2405.749) (-2243.888) * (-2233.535) (-2229.448) [-2213.470] (-2397.698) -- 0:12:07
789000 -- (-2226.087) [-2214.549] (-2381.413) (-2279.650) * (-2237.785) (-2230.306) [-2220.938] (-2398.983) -- 0:12:03
790000 -- (-2228.709) [-2210.877] (-2366.425) (-2237.725) * (-2224.867) (-2224.882) [-2200.364] (-2378.090) -- 0:12:00
Average standard deviation of split frequencies: 0.020286
791000 -- (-2228.132) [-2209.666] (-2382.716) (-2244.911) * (-2202.030) (-2223.871) [-2210.545] (-2381.669) -- 0:11:56
792000 -- (-2231.683) [-2205.259] (-2378.105) (-2243.853) * (-2220.413) (-2239.604) [-2223.260] (-2375.824) -- 0:11:53
793000 -- (-2216.977) [-2206.093] (-2378.393) (-2233.957) * [-2212.850] (-2229.044) (-2203.140) (-2380.553) -- 0:11:50
794000 -- (-2232.655) [-2201.964] (-2355.351) (-2241.329) * [-2215.423] (-2248.018) (-2224.336) (-2391.610) -- 0:11:46
795000 -- (-2244.489) [-2192.673] (-2375.719) (-2234.710) * [-2210.002] (-2260.246) (-2240.228) (-2372.833) -- 0:11:42
Average standard deviation of split frequencies: 0.020520
796000 -- (-2252.764) [-2191.089] (-2396.703) (-2206.851) * [-2220.422] (-2254.801) (-2239.080) (-2383.815) -- 0:11:39
797000 -- (-2244.122) (-2190.882) (-2386.101) [-2205.901] * [-2196.219] (-2227.013) (-2236.389) (-2354.291) -- 0:11:36
798000 -- (-2242.564) [-2205.535] (-2360.191) (-2233.663) * [-2225.905] (-2234.217) (-2232.708) (-2367.887) -- 0:11:32
799000 -- (-2253.377) [-2218.426] (-2368.697) (-2234.233) * [-2248.546] (-2230.773) (-2227.766) (-2365.187) -- 0:11:29
800000 -- (-2271.333) [-2201.942] (-2370.737) (-2232.348) * (-2237.658) (-2194.077) [-2231.193] (-2367.058) -- 0:11:25
Average standard deviation of split frequencies: 0.020856
801000 -- (-2262.496) [-2203.521] (-2382.440) (-2222.088) * (-2227.795) [-2192.850] (-2248.984) (-2359.147) -- 0:11:22
802000 -- (-2241.379) [-2219.464] (-2372.919) (-2232.085) * (-2216.336) [-2181.719] (-2250.105) (-2374.462) -- 0:11:18
803000 -- (-2238.885) [-2228.500] (-2352.049) (-2240.765) * (-2208.499) [-2187.306] (-2240.743) (-2378.802) -- 0:11:15
804000 -- (-2250.975) [-2228.881] (-2384.707) (-2233.350) * [-2202.129] (-2203.311) (-2256.072) (-2384.929) -- 0:11:11
805000 -- (-2245.458) [-2221.883] (-2399.437) (-2246.421) * [-2211.864] (-2228.902) (-2252.439) (-2400.189) -- 0:11:08
Average standard deviation of split frequencies: 0.020803
806000 -- (-2237.141) [-2224.204] (-2388.778) (-2252.742) * [-2215.311] (-2247.917) (-2237.899) (-2388.218) -- 0:11:05
807000 -- (-2253.248) [-2213.863] (-2400.966) (-2249.799) * [-2222.455] (-2244.728) (-2247.214) (-2394.520) -- 0:11:01
808000 -- (-2263.950) [-2213.948] (-2410.403) (-2222.596) * [-2211.891] (-2243.887) (-2239.919) (-2373.333) -- 0:10:58
809000 -- (-2265.517) [-2213.337] (-2395.577) (-2226.001) * [-2204.115] (-2234.895) (-2223.361) (-2371.206) -- 0:10:54
810000 -- (-2255.740) [-2221.906] (-2375.996) (-2243.808) * [-2214.425] (-2254.899) (-2235.884) (-2360.275) -- 0:10:51
Average standard deviation of split frequencies: 0.021167
811000 -- (-2232.858) (-2225.774) (-2372.548) [-2207.955] * [-2208.969] (-2238.036) (-2231.928) (-2361.429) -- 0:10:48
812000 -- (-2228.601) (-2218.727) (-2368.744) [-2209.419] * [-2199.586] (-2207.124) (-2221.421) (-2375.120) -- 0:10:44
813000 -- (-2245.021) (-2263.805) (-2366.145) [-2210.751] * (-2214.469) [-2214.006] (-2224.633) (-2369.098) -- 0:10:41
814000 -- (-2231.493) (-2241.826) (-2359.093) [-2209.462] * [-2209.250] (-2254.973) (-2245.493) (-2374.909) -- 0:10:37
815000 -- [-2235.929] (-2250.764) (-2378.581) (-2220.941) * (-2205.828) [-2234.164] (-2251.504) (-2369.616) -- 0:10:34
Average standard deviation of split frequencies: 0.021144
816000 -- (-2230.834) (-2238.014) (-2380.834) [-2212.241] * (-2207.436) [-2229.555] (-2266.828) (-2369.235) -- 0:10:30
817000 -- (-2240.810) (-2220.052) (-2387.543) [-2209.675] * [-2197.697] (-2224.506) (-2245.135) (-2361.144) -- 0:10:27
818000 -- (-2220.887) (-2217.472) (-2355.928) [-2213.094] * [-2212.028] (-2227.691) (-2231.934) (-2370.695) -- 0:10:24
819000 -- (-2224.455) (-2219.294) (-2359.409) [-2212.659] * [-2211.375] (-2232.367) (-2244.790) (-2359.360) -- 0:10:20
820000 -- (-2254.441) (-2231.281) (-2363.222) [-2204.473] * [-2213.239] (-2224.666) (-2256.241) (-2385.295) -- 0:10:17
Average standard deviation of split frequencies: 0.021085
821000 -- (-2243.592) (-2231.160) (-2385.304) [-2209.695] * (-2204.095) [-2226.294] (-2262.820) (-2406.607) -- 0:10:13
822000 -- (-2236.486) (-2244.757) (-2392.963) [-2211.184] * [-2197.731] (-2231.756) (-2255.095) (-2390.819) -- 0:10:10
823000 -- (-2221.358) (-2251.714) (-2354.176) [-2210.158] * [-2216.380] (-2228.842) (-2241.046) (-2380.744) -- 0:10:06
824000 -- (-2203.622) (-2260.235) (-2365.961) [-2215.796] * [-2216.663] (-2222.485) (-2240.850) (-2368.516) -- 0:10:03
825000 -- (-2211.443) (-2251.386) (-2374.649) [-2205.385] * [-2182.639] (-2205.943) (-2236.815) (-2377.184) -- 0:10:00
Average standard deviation of split frequencies: 0.021120
826000 -- [-2202.112] (-2247.938) (-2363.452) (-2222.961) * [-2186.410] (-2224.525) (-2232.605) (-2374.908) -- 0:09:56
827000 -- [-2199.535] (-2266.187) (-2370.089) (-2206.566) * [-2185.363] (-2215.191) (-2260.393) (-2373.241) -- 0:09:53
828000 -- [-2202.340] (-2262.148) (-2378.581) (-2223.039) * (-2208.047) [-2215.859] (-2270.880) (-2383.990) -- 0:09:49
829000 -- [-2201.314] (-2259.894) (-2371.062) (-2227.957) * [-2205.765] (-2238.542) (-2256.512) (-2375.147) -- 0:09:46
830000 -- [-2196.245] (-2255.361) (-2354.275) (-2217.856) * [-2209.964] (-2210.459) (-2236.324) (-2373.010) -- 0:09:42
Average standard deviation of split frequencies: 0.020952
831000 -- [-2201.448] (-2234.972) (-2350.009) (-2209.198) * (-2216.881) [-2206.278] (-2265.440) (-2365.716) -- 0:09:39
832000 -- [-2210.959] (-2250.944) (-2354.324) (-2238.009) * (-2240.665) [-2202.447] (-2275.149) (-2374.256) -- 0:09:36
833000 -- (-2229.278) (-2240.737) (-2353.178) [-2217.455] * (-2234.003) [-2206.082] (-2276.378) (-2379.435) -- 0:09:32
834000 -- (-2225.194) [-2221.534] (-2360.129) (-2236.163) * (-2215.748) [-2210.802] (-2257.638) (-2383.035) -- 0:09:29
835000 -- [-2227.403] (-2217.560) (-2354.150) (-2245.576) * (-2222.570) [-2224.868] (-2230.808) (-2380.096) -- 0:09:25
Average standard deviation of split frequencies: 0.020902
836000 -- [-2208.232] (-2221.216) (-2360.877) (-2232.491) * [-2226.565] (-2220.603) (-2230.089) (-2351.680) -- 0:09:22
837000 -- (-2206.796) [-2221.378] (-2385.342) (-2242.954) * (-2244.017) [-2224.360] (-2215.041) (-2349.370) -- 0:09:18
838000 -- [-2217.795] (-2206.706) (-2355.486) (-2247.014) * (-2230.215) [-2224.584] (-2234.672) (-2367.247) -- 0:09:15
839000 -- [-2205.695] (-2219.950) (-2378.094) (-2223.662) * [-2211.236] (-2232.244) (-2224.356) (-2376.126) -- 0:09:12
840000 -- (-2214.734) [-2203.147] (-2362.771) (-2257.109) * [-2202.744] (-2231.772) (-2239.942) (-2401.094) -- 0:09:08
Average standard deviation of split frequencies: 0.020924
841000 -- (-2244.041) [-2199.328] (-2378.673) (-2235.189) * [-2206.892] (-2236.592) (-2220.476) (-2404.172) -- 0:09:05
842000 -- (-2228.441) [-2202.691] (-2364.515) (-2231.203) * [-2205.184] (-2222.748) (-2224.535) (-2396.069) -- 0:09:01
843000 -- (-2238.795) [-2222.615] (-2374.056) (-2227.514) * [-2200.892] (-2237.873) (-2248.584) (-2381.735) -- 0:08:58
844000 -- (-2259.947) [-2196.323] (-2383.373) (-2227.181) * [-2212.644] (-2242.752) (-2266.363) (-2390.649) -- 0:08:55
845000 -- (-2269.054) (-2231.067) (-2374.610) [-2220.723] * [-2209.249] (-2230.928) (-2264.856) (-2385.016) -- 0:08:51
Average standard deviation of split frequencies: 0.020651
846000 -- (-2266.895) [-2231.219] (-2378.389) (-2217.578) * [-2203.665] (-2234.697) (-2254.738) (-2363.174) -- 0:08:48
847000 -- (-2242.142) (-2211.639) (-2374.420) [-2205.375] * [-2200.795] (-2221.385) (-2248.380) (-2363.888) -- 0:08:44
848000 -- (-2270.700) (-2208.542) (-2370.065) [-2198.217] * [-2204.365] (-2212.463) (-2263.402) (-2355.849) -- 0:08:41
849000 -- (-2284.095) [-2214.402] (-2368.659) (-2205.495) * [-2197.501] (-2208.415) (-2253.951) (-2373.977) -- 0:08:37
850000 -- (-2250.689) (-2234.150) (-2370.277) [-2213.631] * [-2207.130] (-2207.552) (-2263.893) (-2378.011) -- 0:08:34
Average standard deviation of split frequencies: 0.020548
851000 -- (-2241.474) (-2270.408) (-2370.887) [-2197.302] * (-2207.457) [-2212.311] (-2253.703) (-2376.830) -- 0:08:31
852000 -- (-2239.019) (-2266.981) (-2385.000) [-2205.309] * (-2207.107) [-2213.612] (-2245.131) (-2384.436) -- 0:08:27
853000 -- (-2237.438) (-2244.058) (-2384.375) [-2211.782] * (-2208.847) [-2219.758] (-2280.694) (-2383.500) -- 0:08:24
854000 -- [-2247.219] (-2240.053) (-2396.221) (-2209.884) * [-2219.770] (-2234.265) (-2268.397) (-2380.833) -- 0:08:20
855000 -- (-2237.007) (-2237.897) (-2370.610) [-2216.174] * [-2210.213] (-2232.565) (-2262.195) (-2372.230) -- 0:08:17
Average standard deviation of split frequencies: 0.020448
856000 -- (-2270.120) (-2233.358) (-2378.909) [-2204.687] * (-2214.447) (-2270.625) [-2225.534] (-2378.128) -- 0:08:13
857000 -- (-2256.210) (-2221.386) (-2376.432) [-2203.270] * [-2209.320] (-2274.605) (-2228.242) (-2365.846) -- 0:08:10
858000 -- (-2257.992) (-2206.502) (-2374.636) [-2215.032] * [-2212.303] (-2263.641) (-2218.175) (-2369.107) -- 0:08:07
859000 -- (-2238.653) (-2238.048) (-2363.696) [-2223.848] * (-2226.748) (-2244.482) [-2202.975] (-2365.275) -- 0:08:03
860000 -- [-2218.713] (-2229.579) (-2380.170) (-2233.993) * (-2212.674) (-2251.608) [-2187.640] (-2359.727) -- 0:08:00
Average standard deviation of split frequencies: 0.020429
861000 -- [-2214.015] (-2237.933) (-2365.737) (-2238.204) * (-2218.416) (-2263.526) [-2192.413] (-2373.712) -- 0:07:56
862000 -- [-2231.359] (-2241.416) (-2380.278) (-2235.500) * (-2207.695) (-2256.220) [-2189.742] (-2391.406) -- 0:07:53
863000 -- [-2226.067] (-2241.282) (-2381.276) (-2259.667) * (-2214.223) (-2257.001) [-2200.996] (-2397.023) -- 0:07:49
864000 -- [-2225.924] (-2223.148) (-2405.236) (-2243.029) * (-2229.083) (-2257.582) [-2204.412] (-2376.108) -- 0:07:46
865000 -- (-2232.812) [-2225.515] (-2388.176) (-2257.710) * (-2225.468) (-2224.822) [-2207.343] (-2384.785) -- 0:07:43
Average standard deviation of split frequencies: 0.020753
866000 -- (-2250.783) [-2232.129] (-2402.738) (-2233.535) * (-2245.322) (-2230.426) [-2211.247] (-2384.752) -- 0:07:39
867000 -- (-2218.343) (-2242.218) (-2387.061) [-2225.810] * [-2241.244] (-2237.658) (-2239.964) (-2412.018) -- 0:07:36
868000 -- (-2232.489) (-2238.040) (-2384.200) [-2227.132] * (-2246.711) [-2235.136] (-2253.222) (-2392.648) -- 0:07:32
869000 -- (-2222.044) [-2214.065] (-2382.665) (-2243.676) * (-2262.979) (-2230.693) [-2208.914] (-2382.578) -- 0:07:29
870000 -- [-2224.615] (-2229.956) (-2373.118) (-2229.692) * (-2255.818) (-2226.112) [-2214.584] (-2385.988) -- 0:07:25
Average standard deviation of split frequencies: 0.020921
871000 -- [-2235.083] (-2226.564) (-2373.316) (-2244.763) * (-2240.704) (-2231.081) [-2215.517] (-2373.563) -- 0:07:22
872000 -- (-2230.572) [-2212.402] (-2381.472) (-2251.740) * (-2265.869) (-2235.521) [-2208.172] (-2367.909) -- 0:07:19
873000 -- (-2247.596) [-2205.927] (-2365.930) (-2236.707) * (-2267.520) (-2239.832) [-2217.506] (-2388.271) -- 0:07:15
874000 -- (-2238.306) [-2210.646] (-2387.208) (-2253.977) * (-2264.943) (-2231.696) [-2217.210] (-2402.746) -- 0:07:12
875000 -- (-2224.952) [-2201.475] (-2391.701) (-2242.131) * (-2256.374) (-2234.581) [-2212.243] (-2390.266) -- 0:07:08
Average standard deviation of split frequencies: 0.021492
876000 -- (-2233.623) (-2207.550) (-2371.747) [-2222.892] * (-2256.811) (-2225.416) [-2213.531] (-2381.370) -- 0:07:05
877000 -- (-2217.683) [-2213.856] (-2397.776) (-2230.626) * (-2266.742) (-2236.808) [-2220.288] (-2387.072) -- 0:07:01
878000 -- (-2227.962) [-2207.415] (-2396.595) (-2271.139) * (-2253.760) (-2228.314) [-2230.811] (-2359.535) -- 0:06:58
879000 -- (-2246.816) [-2192.088] (-2398.026) (-2259.713) * (-2237.480) (-2242.690) [-2222.438] (-2362.545) -- 0:06:55
880000 -- (-2249.409) [-2208.921] (-2418.861) (-2249.827) * (-2244.661) (-2262.888) [-2203.783] (-2369.719) -- 0:06:51
Average standard deviation of split frequencies: 0.021943
881000 -- (-2238.851) [-2225.126] (-2390.684) (-2272.383) * (-2230.367) (-2267.610) [-2204.835] (-2349.782) -- 0:06:48
882000 -- (-2240.047) [-2216.762] (-2399.141) (-2268.883) * (-2234.036) (-2255.014) [-2204.101] (-2369.610) -- 0:06:44
883000 -- (-2244.350) [-2199.045] (-2408.824) (-2247.065) * (-2255.579) (-2276.482) [-2214.768] (-2379.100) -- 0:06:41
884000 -- (-2245.399) [-2205.350] (-2412.006) (-2261.689) * (-2259.794) (-2260.060) [-2217.227] (-2383.626) -- 0:06:37
885000 -- (-2221.896) [-2210.574] (-2366.107) (-2265.222) * (-2237.531) (-2275.224) [-2211.699] (-2374.324) -- 0:06:34
Average standard deviation of split frequencies: 0.022132
886000 -- (-2228.336) [-2217.328] (-2384.207) (-2258.596) * (-2240.134) (-2264.718) [-2205.392] (-2357.575) -- 0:06:31
887000 -- (-2227.293) [-2206.649] (-2375.742) (-2273.716) * (-2225.269) (-2254.897) [-2218.020] (-2349.176) -- 0:06:27
888000 -- [-2222.163] (-2220.434) (-2373.210) (-2265.374) * (-2225.565) (-2251.248) [-2207.935] (-2346.060) -- 0:06:24
889000 -- [-2212.102] (-2217.399) (-2371.359) (-2271.102) * (-2243.321) (-2233.047) [-2229.306] (-2364.513) -- 0:06:20
890000 -- [-2216.098] (-2233.739) (-2377.414) (-2243.345) * (-2255.607) (-2234.675) [-2208.627] (-2379.369) -- 0:06:17
Average standard deviation of split frequencies: 0.022372
891000 -- [-2213.375] (-2244.847) (-2397.439) (-2245.127) * (-2277.337) (-2216.855) [-2217.237] (-2372.627) -- 0:06:13
892000 -- [-2200.237] (-2234.398) (-2376.628) (-2251.989) * (-2246.353) [-2229.041] (-2208.106) (-2389.605) -- 0:06:10
893000 -- [-2206.518] (-2233.039) (-2388.209) (-2238.275) * (-2234.324) (-2245.474) [-2200.732] (-2388.821) -- 0:06:07
894000 -- [-2213.258] (-2253.542) (-2370.304) (-2240.271) * (-2234.112) (-2219.793) [-2214.831] (-2364.549) -- 0:06:03
895000 -- [-2199.721] (-2242.143) (-2390.096) (-2211.312) * (-2230.190) (-2217.797) [-2203.345] (-2358.909) -- 0:06:00
Average standard deviation of split frequencies: 0.022430
896000 -- [-2191.138] (-2262.959) (-2363.301) (-2224.186) * (-2234.548) [-2214.540] (-2187.855) (-2390.699) -- 0:05:56
897000 -- (-2224.570) (-2249.421) (-2361.566) [-2218.508] * (-2230.745) (-2221.989) [-2214.741] (-2368.539) -- 0:05:53
898000 -- (-2220.300) (-2272.956) (-2344.559) [-2224.344] * (-2228.239) (-2229.277) [-2221.138] (-2357.965) -- 0:05:49
899000 -- (-2231.028) (-2297.020) (-2377.536) [-2214.817] * (-2242.768) (-2232.232) [-2230.909] (-2356.524) -- 0:05:46
900000 -- (-2224.355) (-2252.824) (-2359.606) [-2208.265] * (-2242.582) (-2224.769) [-2233.793] (-2356.647) -- 0:05:43
Average standard deviation of split frequencies: 0.022659
901000 -- (-2225.327) (-2252.590) (-2361.220) [-2217.969] * (-2249.868) [-2224.796] (-2257.167) (-2376.965) -- 0:05:39
902000 -- (-2227.316) (-2241.044) (-2351.844) [-2233.518] * (-2241.869) [-2212.188] (-2250.014) (-2385.946) -- 0:05:36
903000 -- [-2215.861] (-2255.842) (-2354.343) (-2237.750) * (-2236.940) [-2214.057] (-2241.942) (-2381.432) -- 0:05:32
904000 -- [-2210.807] (-2243.235) (-2350.581) (-2255.505) * [-2218.936] (-2203.837) (-2249.980) (-2380.974) -- 0:05:29
905000 -- [-2203.314] (-2254.591) (-2354.578) (-2235.306) * (-2232.855) [-2210.420] (-2212.033) (-2368.223) -- 0:05:25
Average standard deviation of split frequencies: 0.022765
906000 -- [-2203.621] (-2251.752) (-2369.632) (-2218.761) * [-2227.564] (-2220.255) (-2222.274) (-2362.699) -- 0:05:22
907000 -- [-2211.463] (-2246.406) (-2377.811) (-2234.704) * (-2238.734) [-2215.190] (-2236.830) (-2374.629) -- 0:05:18
908000 -- [-2201.189] (-2252.768) (-2388.519) (-2238.122) * (-2252.732) [-2226.882] (-2244.595) (-2380.236) -- 0:05:15
909000 -- [-2199.980] (-2273.899) (-2359.524) (-2238.139) * (-2214.959) [-2211.369] (-2239.725) (-2378.244) -- 0:05:12
910000 -- [-2193.653] (-2243.074) (-2366.995) (-2254.920) * [-2214.624] (-2232.819) (-2253.480) (-2371.126) -- 0:05:08
Average standard deviation of split frequencies: 0.022751
911000 -- [-2212.166] (-2235.895) (-2359.868) (-2218.689) * (-2226.460) [-2235.790] (-2237.246) (-2372.108) -- 0:05:05
912000 -- [-2212.072] (-2245.277) (-2363.304) (-2230.637) * (-2222.414) [-2202.521] (-2243.870) (-2375.315) -- 0:05:01
913000 -- [-2224.739] (-2255.569) (-2359.444) (-2234.609) * [-2212.476] (-2216.234) (-2239.494) (-2377.677) -- 0:04:58
914000 -- (-2226.589) (-2230.049) (-2360.665) [-2245.469] * (-2221.523) [-2199.376] (-2259.030) (-2368.561) -- 0:04:54
915000 -- [-2229.216] (-2263.950) (-2374.527) (-2232.495) * (-2238.529) [-2199.513] (-2237.156) (-2389.670) -- 0:04:51
Average standard deviation of split frequencies: 0.022545
916000 -- (-2230.578) (-2240.815) (-2385.597) [-2237.892] * (-2232.681) (-2215.939) [-2223.929] (-2387.333) -- 0:04:48
917000 -- (-2245.256) (-2249.682) (-2394.419) [-2234.197] * (-2242.599) [-2222.338] (-2215.608) (-2389.431) -- 0:04:44
918000 -- (-2274.106) [-2248.777] (-2383.534) (-2245.139) * (-2227.694) [-2203.273] (-2237.298) (-2381.410) -- 0:04:41
919000 -- (-2271.124) [-2245.331] (-2367.168) (-2239.568) * (-2229.230) [-2200.866] (-2219.408) (-2359.561) -- 0:04:37
920000 -- (-2246.368) (-2244.144) (-2370.566) [-2228.833] * (-2222.403) [-2212.023] (-2243.555) (-2359.839) -- 0:04:34
Average standard deviation of split frequencies: 0.022385
921000 -- (-2251.860) (-2244.294) (-2370.288) [-2222.916] * (-2248.779) [-2211.359] (-2215.719) (-2349.742) -- 0:04:31
922000 -- (-2245.561) (-2239.185) (-2372.243) [-2214.552] * (-2262.162) [-2216.588] (-2210.121) (-2357.543) -- 0:04:27
923000 -- (-2244.240) (-2241.534) (-2395.380) [-2206.389] * (-2277.452) (-2217.967) [-2205.070] (-2367.357) -- 0:04:24
924000 -- (-2254.785) (-2231.177) (-2385.929) [-2221.042] * (-2234.539) (-2217.793) [-2197.677] (-2329.893) -- 0:04:20
925000 -- (-2256.836) (-2233.468) (-2405.843) [-2216.889] * (-2243.786) (-2215.422) [-2193.975] (-2346.052) -- 0:04:17
Average standard deviation of split frequencies: 0.022260
926000 -- (-2233.587) (-2223.807) (-2420.611) [-2234.589] * (-2244.750) [-2219.393] (-2198.385) (-2356.230) -- 0:04:13
927000 -- (-2235.624) (-2248.168) (-2394.125) [-2208.356] * (-2251.803) [-2213.368] (-2200.718) (-2346.810) -- 0:04:10
928000 -- (-2251.497) (-2224.930) (-2417.172) [-2226.242] * (-2248.842) [-2214.512] (-2215.145) (-2385.088) -- 0:04:07
929000 -- (-2240.129) (-2252.839) (-2412.760) [-2224.203] * (-2256.199) (-2224.764) [-2204.935] (-2400.284) -- 0:04:03
930000 -- (-2207.749) (-2257.778) (-2395.284) [-2218.804] * [-2223.692] (-2244.256) (-2229.712) (-2380.678) -- 0:04:00
Average standard deviation of split frequencies: 0.021755
931000 -- [-2203.917] (-2236.571) (-2400.366) (-2246.516) * [-2243.585] (-2247.694) (-2213.875) (-2354.222) -- 0:03:56
932000 -- [-2216.769] (-2251.925) (-2387.191) (-2239.405) * (-2237.887) (-2237.778) [-2223.851] (-2354.116) -- 0:03:53
933000 -- [-2212.817] (-2266.387) (-2384.345) (-2217.793) * (-2229.416) (-2233.918) [-2207.030] (-2393.741) -- 0:03:49
934000 -- (-2222.269) (-2232.258) (-2377.266) [-2198.513] * (-2205.347) (-2233.674) [-2213.192] (-2386.792) -- 0:03:46
935000 -- [-2208.284] (-2237.993) (-2365.160) (-2219.811) * (-2217.280) (-2238.766) [-2202.356] (-2404.450) -- 0:03:43
Average standard deviation of split frequencies: 0.021782
936000 -- [-2208.521] (-2252.874) (-2364.790) (-2230.649) * (-2210.141) (-2254.405) [-2200.461] (-2394.419) -- 0:03:39
937000 -- [-2206.463] (-2251.109) (-2373.192) (-2235.629) * (-2241.460) (-2223.278) [-2211.618] (-2368.633) -- 0:03:36
938000 -- [-2201.648] (-2239.342) (-2362.861) (-2252.108) * (-2251.996) (-2238.426) [-2221.614] (-2360.770) -- 0:03:32
939000 -- [-2202.476] (-2235.299) (-2370.777) (-2273.201) * (-2226.048) (-2220.798) [-2207.581] (-2352.144) -- 0:03:29
940000 -- [-2218.095] (-2268.196) (-2366.437) (-2236.876) * (-2238.665) (-2223.341) [-2205.574] (-2374.949) -- 0:03:25
Average standard deviation of split frequencies: 0.021624
941000 -- (-2233.270) (-2256.574) (-2373.585) [-2222.038] * (-2226.258) (-2226.508) [-2220.247] (-2376.135) -- 0:03:22
942000 -- (-2226.132) (-2254.034) (-2357.589) [-2203.027] * [-2200.189] (-2254.844) (-2216.327) (-2381.534) -- 0:03:19
943000 -- (-2242.574) (-2248.111) (-2367.892) [-2207.524] * (-2218.824) (-2256.150) [-2207.555] (-2391.188) -- 0:03:15
944000 -- (-2252.995) (-2224.707) (-2378.878) [-2206.568] * (-2233.200) (-2236.187) [-2207.692] (-2394.799) -- 0:03:12
945000 -- (-2236.443) (-2232.875) (-2377.664) [-2220.605] * (-2229.090) (-2228.698) [-2216.935] (-2378.290) -- 0:03:08
Average standard deviation of split frequencies: 0.021652
946000 -- (-2256.385) (-2243.341) (-2387.095) [-2219.138] * (-2246.334) (-2227.223) [-2222.078] (-2378.158) -- 0:03:05
947000 -- (-2255.463) (-2264.108) (-2405.972) [-2213.295] * (-2229.733) (-2253.970) [-2209.436] (-2385.555) -- 0:03:01
948000 -- (-2232.860) (-2250.239) (-2424.171) [-2199.368] * (-2247.467) (-2249.825) [-2210.588] (-2392.688) -- 0:02:58
949000 -- (-2261.354) (-2264.740) (-2397.497) [-2217.275] * (-2228.053) (-2259.712) [-2198.906] (-2389.073) -- 0:02:55
950000 -- (-2240.136) (-2250.113) (-2369.612) [-2216.954] * (-2214.041) (-2259.733) [-2211.786] (-2379.031) -- 0:02:51
Average standard deviation of split frequencies: 0.021530
951000 -- (-2235.179) [-2224.249] (-2373.814) (-2224.021) * [-2227.276] (-2262.828) (-2225.800) (-2359.642) -- 0:02:48
952000 -- (-2242.137) (-2251.189) (-2374.425) [-2220.111] * [-2229.438] (-2245.662) (-2222.938) (-2362.018) -- 0:02:44
953000 -- (-2235.234) (-2273.933) (-2364.578) [-2215.482] * (-2213.210) (-2238.114) [-2220.232] (-2375.889) -- 0:02:41
954000 -- (-2237.565) (-2255.081) (-2371.935) [-2216.206] * [-2203.243] (-2260.782) (-2236.344) (-2372.453) -- 0:02:37
955000 -- [-2218.760] (-2237.439) (-2386.922) (-2231.013) * [-2211.804] (-2241.667) (-2234.619) (-2370.168) -- 0:02:34
Average standard deviation of split frequencies: 0.021422
956000 -- [-2200.456] (-2235.595) (-2385.447) (-2225.160) * [-2217.369] (-2238.267) (-2248.940) (-2384.675) -- 0:02:31
957000 -- (-2208.674) (-2254.789) (-2378.090) [-2198.133] * [-2199.393] (-2253.348) (-2230.219) (-2395.239) -- 0:02:27
958000 -- [-2195.740] (-2255.139) (-2387.154) (-2240.435) * [-2203.537] (-2252.423) (-2224.083) (-2360.485) -- 0:02:24
959000 -- [-2207.892] (-2248.099) (-2397.409) (-2254.288) * [-2197.263] (-2241.551) (-2220.726) (-2365.191) -- 0:02:20
960000 -- [-2208.973] (-2249.308) (-2361.647) (-2231.508) * [-2192.068] (-2263.784) (-2248.210) (-2342.137) -- 0:02:17
Average standard deviation of split frequencies: 0.021347
961000 -- [-2215.063] (-2253.480) (-2374.144) (-2229.722) * [-2206.446] (-2272.966) (-2232.575) (-2363.549) -- 0:02:13
962000 -- [-2226.224] (-2247.763) (-2388.038) (-2229.313) * [-2214.148] (-2249.595) (-2240.995) (-2395.303) -- 0:02:10
963000 -- [-2216.753] (-2271.696) (-2371.095) (-2226.224) * [-2205.925] (-2233.170) (-2218.731) (-2392.186) -- 0:02:06
964000 -- [-2213.192] (-2269.191) (-2407.602) (-2227.302) * [-2202.711] (-2225.448) (-2213.459) (-2368.482) -- 0:02:03
965000 -- [-2208.897] (-2256.237) (-2373.665) (-2216.298) * [-2199.572] (-2253.780) (-2228.489) (-2366.556) -- 0:02:00
Average standard deviation of split frequencies: 0.021036
966000 -- (-2216.865) (-2252.829) (-2411.575) [-2193.743] * (-2215.116) (-2256.096) [-2217.173] (-2380.513) -- 0:01:56
967000 -- (-2218.649) (-2248.313) (-2394.513) [-2206.846] * [-2208.524] (-2241.804) (-2218.874) (-2381.476) -- 0:01:53
968000 -- (-2209.775) (-2235.549) (-2389.953) [-2191.475] * (-2224.355) (-2241.607) [-2212.070] (-2390.617) -- 0:01:49
969000 -- (-2212.760) (-2247.622) (-2375.565) [-2196.369] * (-2224.893) (-2281.173) [-2194.193] (-2379.917) -- 0:01:46
970000 -- [-2209.181] (-2231.350) (-2386.616) (-2208.713) * (-2229.821) (-2268.417) [-2196.262] (-2375.730) -- 0:01:42
Average standard deviation of split frequencies: 0.020813
971000 -- (-2238.973) (-2216.724) (-2391.712) [-2207.414] * (-2229.228) (-2258.604) [-2196.095] (-2364.821) -- 0:01:39
972000 -- [-2216.397] (-2234.358) (-2369.930) (-2223.925) * (-2222.790) (-2256.644) [-2192.012] (-2375.755) -- 0:01:36
973000 -- [-2215.323] (-2247.383) (-2373.014) (-2220.786) * (-2223.857) (-2247.742) [-2203.991] (-2378.935) -- 0:01:32
974000 -- (-2235.116) [-2229.197] (-2394.328) (-2234.805) * [-2203.212] (-2250.205) (-2231.815) (-2376.834) -- 0:01:29
975000 -- (-2241.161) [-2217.476] (-2375.116) (-2232.508) * (-2209.759) (-2239.426) [-2227.800] (-2399.105) -- 0:01:25
Average standard deviation of split frequencies: 0.020687
976000 -- [-2238.456] (-2237.300) (-2356.360) (-2259.447) * (-2217.311) (-2255.887) [-2213.250] (-2399.333) -- 0:01:22
977000 -- [-2229.346] (-2227.967) (-2367.918) (-2236.381) * (-2216.985) (-2254.243) [-2213.315] (-2390.848) -- 0:01:18
978000 -- [-2239.619] (-2248.479) (-2379.608) (-2214.447) * [-2207.288] (-2258.762) (-2230.684) (-2379.968) -- 0:01:15
979000 -- (-2229.733) (-2265.291) (-2370.683) [-2209.490] * [-2206.393] (-2252.756) (-2228.506) (-2378.171) -- 0:01:12
980000 -- (-2232.451) (-2247.673) (-2374.643) [-2212.575] * (-2227.404) (-2266.128) [-2210.801] (-2378.193) -- 0:01:08
Average standard deviation of split frequencies: 0.020631
981000 -- (-2233.432) (-2239.210) (-2392.457) [-2210.625] * (-2216.992) (-2256.511) [-2198.232] (-2382.464) -- 0:01:05
982000 -- (-2236.036) (-2234.887) (-2387.787) [-2217.228] * (-2224.321) (-2239.344) [-2212.837] (-2363.253) -- 0:01:01
983000 -- (-2243.853) (-2222.100) (-2392.986) [-2201.553] * (-2233.662) (-2214.640) [-2208.751] (-2366.930) -- 0:00:58
984000 -- (-2234.721) (-2224.070) (-2371.987) [-2201.927] * (-2231.519) (-2226.299) [-2203.131] (-2365.077) -- 0:00:54
985000 -- (-2283.105) [-2217.170] (-2374.063) (-2200.035) * (-2233.371) (-2240.838) [-2199.882] (-2381.011) -- 0:00:51
Average standard deviation of split frequencies: 0.020495
986000 -- (-2283.911) (-2224.016) (-2392.318) [-2204.190] * (-2233.755) (-2245.906) [-2201.325] (-2389.165) -- 0:00:48
987000 -- (-2262.048) (-2220.523) (-2381.266) [-2198.169] * (-2230.669) (-2255.654) [-2211.581] (-2401.734) -- 0:00:44
988000 -- (-2270.842) (-2234.699) (-2400.466) [-2204.875] * (-2220.026) (-2265.451) [-2205.364] (-2390.243) -- 0:00:41
989000 -- (-2250.848) [-2224.013] (-2367.583) (-2223.889) * (-2223.310) (-2276.383) [-2227.763] (-2386.478) -- 0:00:37
990000 -- [-2222.804] (-2233.273) (-2373.447) (-2215.801) * (-2224.266) (-2259.922) [-2227.211] (-2362.346) -- 0:00:34
Average standard deviation of split frequencies: 0.020345
991000 -- [-2212.523] (-2229.544) (-2395.342) (-2231.872) * (-2216.446) (-2254.359) [-2207.964] (-2395.423) -- 0:00:30
992000 -- [-2225.716] (-2243.885) (-2381.483) (-2215.910) * (-2223.915) (-2238.595) [-2213.993] (-2392.147) -- 0:00:27
993000 -- (-2230.542) (-2222.996) (-2379.220) [-2214.989] * [-2226.938] (-2225.508) (-2217.167) (-2399.561) -- 0:00:24
994000 -- [-2214.734] (-2216.877) (-2379.125) (-2227.909) * [-2224.078] (-2243.856) (-2221.301) (-2378.031) -- 0:00:20
995000 -- (-2223.935) (-2226.486) (-2354.942) [-2237.090] * (-2264.867) (-2241.271) [-2216.570] (-2369.358) -- 0:00:17
Average standard deviation of split frequencies: 0.020277
996000 -- [-2214.276] (-2211.184) (-2374.681) (-2246.167) * (-2267.015) (-2226.315) [-2206.772] (-2380.227) -- 0:00:13
997000 -- [-2211.460] (-2238.857) (-2361.285) (-2240.381) * (-2268.349) (-2210.106) [-2227.179] (-2399.521) -- 0:00:10
998000 -- [-2200.161] (-2210.227) (-2371.307) (-2235.705) * (-2259.666) [-2208.485] (-2229.644) (-2369.259) -- 0:00:06
999000 -- (-2236.049) [-2201.709] (-2369.688) (-2252.602) * (-2229.758) [-2200.977] (-2243.385) (-2363.977) -- 0:00:03
1000000 -- (-2240.150) (-2204.084) (-2357.441) [-2232.161] * (-2220.172) [-2216.120] (-2246.903) (-2367.729) -- 0:00:00
Average standard deviation of split frequencies: 0.020138
Analysis completed in 57 mins 13 seconds
Analysis used 3429.23 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -2171.26
Likelihood of best state for "cold" chain of run 2 was -2175.40
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
36.9 % ( 30 %) Dirichlet(Revmat{all})
54.5 % ( 45 %) Slider(Revmat{all})
30.9 % ( 26 %) Dirichlet(Pi{all})
32.2 % ( 23 %) Slider(Pi{all})
42.4 % ( 28 %) Multiplier(Alpha{1,2})
43.7 % ( 23 %) Multiplier(Alpha{3})
62.1 % ( 44 %) Slider(Pinvar{all})
46.7 % ( 52 %) ExtSPR(Tau{all},V{all})
35.4 % ( 42 %) ExtTBR(Tau{all},V{all})
51.9 % ( 47 %) NNI(Tau{all},V{all})
37.7 % ( 44 %) ParsSPR(Tau{all},V{all})
27.2 % ( 26 %) Multiplier(V{all})
64.9 % ( 64 %) Nodeslider(V{all})
25.3 % ( 30 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
36.8 % ( 29 %) Dirichlet(Revmat{all})
54.1 % ( 37 %) Slider(Revmat{all})
30.8 % ( 23 %) Dirichlet(Pi{all})
32.2 % ( 30 %) Slider(Pi{all})
42.8 % ( 32 %) Multiplier(Alpha{1,2})
43.7 % ( 24 %) Multiplier(Alpha{3})
62.3 % ( 36 %) Slider(Pinvar{all})
47.0 % ( 40 %) ExtSPR(Tau{all},V{all})
35.6 % ( 33 %) ExtTBR(Tau{all},V{all})
51.8 % ( 55 %) NNI(Tau{all},V{all})
37.5 % ( 45 %) ParsSPR(Tau{all},V{all})
27.3 % ( 28 %) Multiplier(V{all})
64.7 % ( 63 %) Nodeslider(V{all})
25.4 % ( 33 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.11 0.00 0.00
2 | 166600 0.11 0.00
3 | 166593 167067 0.00
4 | 166650 166673 166417
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.11 0.00 0.00
2 | 166489 0.11 0.00
3 | 166736 167091 0.00
4 | 166789 166308 166587
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -2197.71
| 2 2 1 |
| 21 1 |
|2 1 1 2 |
| 2 2 2 1 1 11 2 |
| 2 1 2 11 1122 222 2 |
| 1 12 1 2 1 1 1 21 |
|1 12 1 2 22 2 2 1 1* 2 11 * 1 1 211 2 |
| 2 11 1 1 2 2 2 2 2 12 2 1 22 2 1|
| *2 1 1 21 2 2 2 1 2 1 1 2 1 12|
| 12 1 * * 2 |
| 22 1 1 2 |
| 1 2 1 |
| |
| 1 2 |
| 1 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -2230.22
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -2182.05 -2246.06
2 -2176.21 -2246.96
--------------------------------------
TOTAL -2176.90 -2246.61
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 2.144865 0.056193 1.713633 2.614201 2.125261 697.30 770.08 1.000
r(A<->C){all} 0.092616 0.000458 0.052726 0.134988 0.090784 167.64 266.94 1.002
r(A<->G){all} 0.276735 0.001408 0.204797 0.348798 0.275587 202.43 289.78 1.004
r(A<->T){all} 0.069832 0.000204 0.042015 0.096602 0.068915 391.33 452.75 1.001
r(C<->G){all} 0.071427 0.000446 0.032570 0.114131 0.069606 395.10 405.11 1.000
r(C<->T){all} 0.411716 0.001737 0.332438 0.493101 0.411193 229.00 262.55 1.006
r(G<->T){all} 0.077674 0.000268 0.047851 0.109462 0.076781 376.57 455.27 1.004
pi(A){all} 0.285490 0.000605 0.239266 0.335670 0.285000 352.92 426.44 1.000
pi(C){all} 0.183622 0.000382 0.147235 0.222668 0.182979 482.28 499.85 1.001
pi(G){all} 0.195744 0.000442 0.155608 0.236572 0.195477 461.82 471.80 1.000
pi(T){all} 0.335144 0.000637 0.288896 0.386724 0.334684 363.31 447.74 1.003
alpha{1,2} 1.315423 0.337893 0.562003 2.443284 1.174410 787.39 894.39 1.000
alpha{3} 1.244009 0.188333 0.580513 2.092817 1.166432 956.24 987.00 1.000
pinvar{all} 0.087559 0.003196 0.000095 0.189317 0.081487 873.56 976.39 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C52
2 -- C67
3 -- C66
4 -- C11
5 -- C13
6 -- C69
7 -- C70
8 -- C68
9 -- C16
10 -- C75
11 -- C19
12 -- C59
13 -- C18
14 -- C20
15 -- C77
16 -- C78
17 -- C24
18 -- C22
19 -- C25
20 -- C84
21 -- C83
22 -- C29
23 -- C58
24 -- C27
25 -- C86
26 -- C87
27 -- C85
28 -- C34
29 -- C31
30 -- C93
31 -- C92
32 -- C37
33 -- C39
34 -- C3
35 -- C95
36 -- C96
37 -- C94
38 -- C43
39 -- C40
40 -- C102
41 -- C101
42 -- C47
43 -- C45
44 -- C104
45 -- C60
46 -- C50
47 -- C1
48 -- C49
49 -- C51
50 -- C9
51 -- C56
52 -- C62
53 -- C79
54 -- C98
55 -- C38
56 -- C61
57 -- C15
58 -- C6
59 -- C14
60 -- C72
61 -- C90
62 -- C63
63 -- C82
64 -- C73
65 -- C76
66 -- C88
67 -- C7
68 -- C46
69 -- C57
70 -- C91
71 -- C2
72 -- C28
73 -- C48
74 -- C97
75 -- C32
76 -- C23
77 -- C100
78 -- C5
79 -- C54
80 -- C55
81 -- C30
82 -- C65
83 -- C35
84 -- C41
85 -- C53
86 -- C4
87 -- C36
88 -- C74
89 -- C8
90 -- C71
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
--------------------------------------------------------------------------------
1 -- .**********************************************************************
2 -- .*.....................................................................
3 -- ..*....................................................................
4 -- ...*...................................................................
5 -- ....*..................................................................
6 -- .....*.................................................................
7 -- ......*................................................................
8 -- .......*...............................................................
9 -- ........*..............................................................
10 -- .........*.............................................................
11 -- ..........*............................................................
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14 -- .............*.........................................................
15 -- ..............*........................................................
16 -- ...............*.......................................................
17 -- ................*......................................................
18 -- .................*.....................................................
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20 -- ...................*...................................................
21 -- ....................*..................................................
22 -- .....................*.................................................
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24 -- .......................*...............................................
25 -- ........................*..............................................
26 -- .........................*.............................................
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29 -- ............................*..........................................
30 -- .............................*.........................................
31 -- ..............................*........................................
32 -- ...............................*.......................................
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35 -- ..................................*....................................
36 -- ...................................*...................................
37 -- ....................................*..................................
38 -- .....................................*.................................
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40 -- .......................................*...............................
41 -- ........................................*..............................
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48 -- ...............................................*.......................
49 -- ................................................*......................
50 -- .................................................*.....................
51 -- ..................................................*....................
52 -- ...................................................*...................
53 -- ....................................................*..................
54 -- .....................................................*.................
55 -- ......................................................*................
56 -- .......................................................*...............
57 -- ........................................................*..............
58 -- .........................................................*.............
59 -- ..........................................................*............
60 -- ...........................................................*...........
61 -- ............................................................*..........
62 -- .............................................................*.........
63 -- ..............................................................*........
64 -- ...............................................................*.......
65 -- ................................................................*......
66 -- .................................................................*.....
67 -- ..................................................................*....
68 -- ...................................................................*...
69 -- ....................................................................*..
70 -- .....................................................................*.
71 -- ......................................................................*
72 -- .......................................................................
73 -- .......................................................................
74 -- .......................................................................
75 -- .......................................................................
76 -- .......................................................................
77 -- .......................................................................
78 -- .......................................................................
79 -- .......................................................................
80 -- .......................................................................
81 -- .......................................................................
82 -- .......................................................................
83 -- .......................................................................
84 -- .......................................................................
85 -- .......................................................................
86 -- .......................................................................
87 -- .......................................................................
88 -- .......................................................................
89 -- .......................................................................
90 -- .......................................................................
91 -- .....................*........................*........................
92 -- ...**.*.***.**********.************.*...*.*...*..*..***.***.*.******.**
93 -- .**..*.....*..........*..............***....*.....**...*...*.*......*..
94 -- ...*.............................................*.......*........*....
95 -- .......................................................................
96 -- .**..*.....*..........*..............*......*.....**...*.....*......*..
97 -- ...*....***.*********...***..****.*.*...*........*..***..*..*.******.*.
98 -- ......*....................*...........................................
99 -- .....*......................................*......*...................
100 -- ...............................**......................................
101 -- ........*.*.**..**.......*..............*..............................
102 -- .........*.....*.......................................................
103 -- .......................*...............................................
104 -- ....................................*...........................*......
105 -- ...................**.....*....................................*.......
106 -- ........................*...................................*..........
107 -- ................................................................*......
108 -- ..................*..................................................*.
109 -- ...*....***.*********..****..****.*.*...*........*..***..*..*.******.*.
110 -- ...*....***.*********..****..****.*.*...*.*......*..***..*..*.******.*.
111 -- ..........................................*............................
112 -- ...*....***.*********..****..******.*...*.*......*..***.***.*.******.**
113 -- ...*....***.*********..****.*******.*...*.*......*..***.***.*.******.**
114 -- .................................*....................................*
115 -- .******.***************************.*****.***.*..**********************
116 -- .******.***************************.*****.*.*.*..**********************
117 -- ...........*...........................................*...............
118 -- ........................*...................................*.*........
119 -- ..*........*...........................................*...............
120 -- .........*.....*..................*....................................
121 -- .........*.....*...**.....*.......*............................*.......
122 -- ......*..............*.....*..................*........................
123 -- ...............................**.....................*................
124 -- .*................................................*..........*......*..
125 -- ....................................................*..................
126 -- .....*.............................................*...................
127 -- ......*....................*...........................................
128 -- ......*................................................................
129 -- .....*......................................*..........................
130 -- ...........................*...........................................
131 -- ............................................*......*...................
132 -- ..*........*..........*................................*...............
133 -- .....................................................*.............*...
134 -- ..............*...............*........................................
135 -- .*...*................*..............*......*.....**.........*......*..
136 -- .......................................................*...............
137 -- ...*....***.*********..****..****.*.*...*.*......*..***.**..*.******.*.
138 -- ...........*...........................................*...............
139 -- ...........*...........................................................
140 -- .................................*........................*...........*
141 -- .*...................................*............*..........*......*..
142 -- ..................*..........*.......................................*.
143 -- .................................*......................*.*...........*
144 -- ........................*...................................*.*....*...
145 -- ..*..*.....*..........*.....................*......*...*...............
146 -- ...*....***.*********...***..****.*.*...*........*..*.*..*..*.******.*.
147 -- ...*....***.*********...***..****.*.*...*........*...**..*..*.******.*.
148 -- ......................................**...................*...........
149 -- .........*.....*...**.....*....................................*.......
150 -- .............................*.**.....................*................
151 -- .....*................*.....................*......*...................
152 -- .*...*...............................*......*.....**.........*......*..
153 -- ...................*......*....................................*.......
154 -- .......................................................................
155 -- .....................*........................*........................
156 -- ...................*......*............................................
157 -- ....................*.....*....................................*.......
158 -- ......................................*....................*...........
159 -- ...................*...........................................*.......
160 -- ...**.*.***.**********.************.*...*.*...*..*..***.***.*.******.**
161 -- .....................*.................................................
162 -- .**..*.....*..........*..............***....*.....**...*.....*......*..
163 -- ....................*.....*............................................
164 -- .**..*.....*..........*..............**.....*.....**...*.....*......*..
165 -- ..............................................*........................
166 -- .**..*.....*..........*..............*......*.....**...*...*.*......*..
167 -- .....................*.................................................
168 -- ...**.*.***.**********.************.*...*.**..*..*..***.***.*.******.**
169 -- .....................*........................*........................
170 -- ......................................**...............................
171 -- .....................*.................................................
172 -- ....*..................................................................
173 -- ........................*...................................*.*..*.*...
174 -- ..............................................*........................
175 -- .**..*.....*..........*..............**.....*.....**...*...*.*......*..
176 -- ....................*..........................................*.......
177 -- .......................................*...................*...........
178 -- ...................**.....*............................................
179 -- .....................*........................*........................
180 -- ...................**..........................................*.......
181 -- ..............................................*........................
182 -- ..........................*....................................*.......
183 -- .**..*.....*..........*..............*.*....*.....**...*.....*......*..
184 -- .**..*.....*..........*..............*.*....*.....**...*...*.*......*..
185 -- ..................*..........*.**.....................*..............*.
186 -- ...*....***.*********..****..******.*...*.*......*..***..**.*.******.**
187 -- ...................**..................................................
188 -- ...*....***.*********...***..****...*...*........*..***..*..*.******.*.
189 -- ...*..*.***.**********.************.*...*.*...*..*..***.***.*.******.**
190 -- ...*..*.***.**********.************.*...*.*...*..*..***.***.*.******.**
191 -- ...*....***.*********..****..******.*...*.*......*..***.**..*.******.**
192 -- ........................*...................................*......*...
193 -- ........*.*.**..**.......*..........*...*.......................*......
194 -- ...*....***.*********..****..****.*.*...*.*......*..***.***.*.******.*.
195 -- ...*.....................................................*.............
196 -- ...*..............................................................*....
197 -- .................................................*................*....
198 -- ...*.....................................................*........*....
199 -- .................................*......................*.............*
200 -- ...*...................................................................
201 -- ..................................................................*....
202 -- ...*....***.******.**....**..****...*...*........*..*.*..*.....**.*....
203 -- ..................................*....................................
204 -- .................................................*.......*.............
205 -- ...*....*.*.***.***.....**...****...*...*........*...**..*..*.*.****.*.
206 -- ...*.............................................*.......*........*....
207 -- ...*.............................................*.....................
208 -- ...*.............................................*................*....
209 -- ...**...***.*********..****.*******.*...*.*......*..***.***.*.******.**
210 -- .........................................................*........*....
211 -- .........*.....*...**.....*.......*.................*..........*.......
212 -- .................................................*.......*........*....
213 -- .......................................................................
214 -- ...*.............................................*.......*.............
215 -- ....*.*..............*.....*..................*........................
216 -- .........................................................*.............
217 -- .................................................*.....................
218 -- ........................................................*.*............
219 -- .**..*.....*..........*.....................*.....**...*.....*......*..
220 -- .*................................................*..........*......*..
221 -- ...*....***.*********..****..****.*.*...*.*......*..***..**.*.******.*.
222 -- .............................*.**......................................
223 -- ...*....***.*********..****..******.*...*.*......*..***..*..*.******.**
224 -- ........................*............................*......*.*....*...
225 -- ....*.*..............*.....*..................*........................
226 -- ...*....***.*********..****.*******.*...*.*......*..***.***.*.******.**
227 -- .....*...............................*......*......*...................
228 -- ...**...***.*********..****.*******.*...*.*......*..***.***.*.******.**
229 -- ...*....***.******.**....**..****.*.*...*........*..*.*..*.....**.*....
230 -- .*...*.....*..........*..............*......*.....**...*.....*......*..
231 -- .......................................................................
232 -- ......*..............*.....*..................*........................
233 -- ..............................***......................................
234 -- ..............*...............*........................................
235 -- ........*.*.**..**.......*...*.**.......*.............*................
236 -- ..................................................*....................
237 -- .....................................*.................................
238 -- ..*..*.....*..........*..............*......*......*...*...............
239 -- ..................................................*.................*..
240 -- .*...........................................................*.........
241 -- ..................*..........*........................*..............*.
242 -- ...*....***.******.**....**..****.*.*...*........*..*.*..*.....**.*....
243 -- ...*....*.*.***.*****...***..****...*...*........*..***..*..*.******.*.
244 -- ...*....*.*.***.***.....**...****...*...*........*..***..*..*.*.****.*.
245 -- ...*.............................................*.......*........*....
246 -- ........................*............................*......*.*..*.*...
247 -- ..................*..........*.**.....................*..............*.
248 -- ..................*.....*............................*......*.*..*.*.*.
--------------------------------------------------------------------------------
ID -- Partition (continued)
--------------------------------------------------------------------------------
1 -- *******************
2 -- ...................
3 -- ...................
4 -- ...................
5 -- ...................
6 -- ...................
7 -- ...................
8 -- ...................
9 -- ...................
10 -- ...................
11 -- ...................
12 -- ...................
13 -- ...................
14 -- ...................
15 -- ...................
16 -- ...................
17 -- ...................
18 -- ...................
19 -- ...................
20 -- ...................
21 -- ...................
22 -- ...................
23 -- ...................
24 -- ...................
25 -- ...................
26 -- ...................
27 -- ...................
28 -- ...................
29 -- ...................
30 -- ...................
31 -- ...................
32 -- ...................
33 -- ...................
34 -- ...................
35 -- ...................
36 -- ...................
37 -- ...................
38 -- ...................
39 -- ...................
40 -- ...................
41 -- ...................
42 -- ...................
43 -- ...................
44 -- ...................
45 -- ...................
46 -- ...................
47 -- ...................
48 -- ...................
49 -- ...................
50 -- ...................
51 -- ...................
52 -- ...................
53 -- ...................
54 -- ...................
55 -- ...................
56 -- ...................
57 -- ...................
58 -- ...................
59 -- ...................
60 -- ...................
61 -- ...................
62 -- ...................
63 -- ...................
64 -- ...................
65 -- ...................
66 -- ...................
67 -- ...................
68 -- ...................
69 -- ...................
70 -- ...................
71 -- ...................
72 -- *..................
73 -- .*.................
74 -- ..*................
75 -- ...*...............
76 -- ....*..............
77 -- .....*.............
78 -- ......*............
79 -- .......*...........
80 -- ........*..........
81 -- .........*.........
82 -- ..........*........
83 -- ...........*.......
84 -- ............*......
85 -- .............*.....
86 -- ..............*....
87 -- ...............*...
88 -- ................*..
89 -- .................*.
90 -- ..................*
91 -- *........*.........
92 -- *.***.*..*.*..*****
93 -- .......**.*.**.....
94 -- .................*.
95 -- ............**.....
96 -- .......**.*.**.....
97 -- ...**..........****
98 -- ...........*.......
99 -- ...................
100 -- ...................
101 -- ....*..............
102 -- ...................
103 -- ......*............
104 -- ................*..
105 -- ...................
106 -- ...................
107 -- ................*..
108 -- ...................
109 -- ...**.*........****
110 -- ...**.*.......*****
111 -- ..............*....
112 -- ...**.*.......*****
113 -- ...**.*.......*****
114 -- ...................
115 -- *.***.*************
116 -- *.***.*************
117 -- ........*..........
118 -- ...................
119 -- ........*..........
120 -- ...................
121 -- ...................
122 -- *........*.*.......
123 -- ...................
124 -- .......*..*.**.....
125 -- ..................*
126 -- ...................
127 -- ...................
128 -- ...........*.......
129 -- ...................
130 -- ...........*.......
131 -- ...................
132 -- ........*..........
133 -- ...................
134 -- ...................
135 -- .......*..*.**.....
136 -- ........*..........
137 -- ...**.*.......*****
138 -- ...................
139 -- ........*..........
140 -- ...................
141 -- .......*..*.**.....
142 -- ...................
143 -- ...................
144 -- ...................
145 -- ........*..........
146 -- ...**..........****
147 -- ...**..........****
148 -- ...................
149 -- ...................
150 -- ...................
151 -- ...................
152 -- .......*..*.**.....
153 -- ...................
154 -- *........*.........
155 -- ...................
156 -- ...................
157 -- ...................
158 -- ...................
159 -- ...................
160 -- *..**.*..*.*..*****
161 -- *..................
162 -- .......**.*.**.....
163 -- ...................
164 -- .......**.*.**.....
165 -- .........*.........
166 -- .......**.*.**.....
167 -- .........*.........
168 -- *.***.*..*.*..*****
169 -- *..................
170 -- ...................
171 -- *........*.........
172 -- ..*................
173 -- ...................
174 -- *........*.........
175 -- .......**.*.**.....
176 -- ...................
177 -- ...................
178 -- ...................
179 -- .........*.........
180 -- ...................
181 -- *..................
182 -- ...................
183 -- .......**.*.**.....
184 -- .......**.*.**.....
185 -- ...................
186 -- ...**.*.......*****
187 -- ...................
188 -- ...**..........****
189 -- *..**.*..*.*..*****
190 -- *.***.*..*.*..*****
191 -- ...**.*.......*****
192 -- ...................
193 -- ....*...........*..
194 -- ...**.*.......*****
195 -- ...................
196 -- ...................
197 -- ...................
198 -- .................*.
199 -- ...................
200 -- .................*.
201 -- .................*.
202 -- ....*..........****
203 -- ...*...............
204 -- ...................
205 -- ...**..........****
206 -- ...................
207 -- ...................
208 -- .................*.
209 -- ...**.*.......*****
210 -- ...................
211 -- ...................
212 -- .................*.
213 -- ...*...........*...
214 -- .................*.
215 -- *.*......*.*.......
216 -- .................*.
217 -- .................*.
218 -- ...................
219 -- .......**.*.**.....
220 -- .......*..*........
221 -- ...**.*.......*****
222 -- ...................
223 -- ...**.*.......*****
224 -- ...................
225 -- *........*.*.......
226 -- ..***.*.......*****
227 -- ...................
228 -- ..***.*.......*****
229 -- ....*..........****
230 -- .......**.*.**.....
231 -- .......*....**.....
232 -- *.*......*.*.......
233 -- ...................
234 -- ..................*
235 -- ....*..............
236 -- ..........*........
237 -- ............**.....
238 -- ........*..........
239 -- ...................
240 -- ...................
241 -- ...................
242 -- ...**..........****
243 -- ...**..........****
244 -- ...**..........****
245 -- ...............*.*.
246 -- ...*...............
247 -- ...............*...
248 -- ...*...............
--------------------------------------------------------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
-----------------------------------------------------------------
91 3002 1.000000 0.000000 1.000000 1.000000 2
92 3002 1.000000 0.000000 1.000000 1.000000 2
93 3002 1.000000 0.000000 1.000000 1.000000 2
94 3002 1.000000 0.000000 1.000000 1.000000 2
95 3002 1.000000 0.000000 1.000000 1.000000 2
96 3002 1.000000 0.000000 1.000000 1.000000 2
97 3002 1.000000 0.000000 1.000000 1.000000 2
98 3002 1.000000 0.000000 1.000000 1.000000 2
99 3002 1.000000 0.000000 1.000000 1.000000 2
100 3002 1.000000 0.000000 1.000000 1.000000 2
101 3002 1.000000 0.000000 1.000000 1.000000 2
102 3001 0.999667 0.000471 0.999334 1.000000 2
103 2991 0.996336 0.003298 0.994004 0.998668 2
104 2966 0.988008 0.005653 0.984011 0.992005 2
105 2965 0.987675 0.006124 0.983344 0.992005 2
106 2962 0.986676 0.008480 0.980680 0.992672 2
107 2947 0.981679 0.005182 0.978015 0.985343 2
108 2938 0.978681 0.017901 0.966023 0.991339 2
109 2922 0.973351 0.016017 0.962025 0.984677 2
110 2860 0.952698 0.001884 0.951366 0.954031 2
111 2850 0.949367 0.000000 0.949367 0.949367 2
112 2713 0.903731 0.013662 0.894071 0.913391 2
113 2565 0.854430 0.017430 0.842105 0.866755 2
114 2534 0.844104 0.016959 0.832112 0.856096 2
115 2425 0.807795 0.066424 0.760826 0.854763 2
116 2251 0.749833 0.057002 0.709527 0.790140 2
117 2230 0.742838 0.005653 0.738841 0.746835 2
118 2107 0.701865 0.008951 0.695536 0.708195 2
119 1959 0.652565 0.011777 0.644237 0.660893 2
120 1585 0.527981 0.096574 0.459694 0.596269 2
121 1522 0.506995 0.107409 0.431046 0.582945 2
122 1493 0.497335 0.009893 0.490340 0.504330 2
123 1385 0.461359 0.086210 0.400400 0.522318 2
124 1184 0.394404 0.007537 0.389074 0.399734 2
125 1137 0.378748 0.022141 0.363091 0.394404 2
126 1025 0.341439 0.008009 0.335776 0.347102 2
127 1013 0.337442 0.010835 0.329780 0.345103 2
128 1000 0.333111 0.037687 0.306462 0.359760 2
129 991 0.330113 0.018373 0.317122 0.343105 2
130 989 0.329447 0.026852 0.310460 0.348434 2
131 986 0.328448 0.010364 0.321119 0.335776 2
132 983 0.327448 0.002355 0.325783 0.329114 2
133 952 0.317122 0.050878 0.281146 0.353098 2
134 931 0.310127 0.065482 0.263824 0.356429 2
135 915 0.304797 0.029679 0.283811 0.325783 2
136 891 0.296802 0.002355 0.295137 0.298468 2
137 875 0.291472 0.000471 0.291139 0.291805 2
138 868 0.289141 0.006595 0.284477 0.293804 2
139 864 0.287808 0.000942 0.287142 0.288474 2
140 801 0.266822 0.014604 0.256496 0.277149 2
141 785 0.261492 0.020257 0.247169 0.275816 2
142 781 0.260160 0.066424 0.213191 0.307129 2
143 759 0.252831 0.040043 0.224517 0.281146 2
144 758 0.252498 0.010364 0.245170 0.259827 2
145 731 0.243504 0.026852 0.224517 0.262492 2
146 714 0.237841 0.119657 0.153231 0.322452 2
147 674 0.224517 0.118715 0.140573 0.308461 2
148 661 0.220187 0.001413 0.219187 0.221186 2
149 658 0.219187 0.014133 0.209194 0.229181 2
150 655 0.218188 0.009893 0.211193 0.225183 2
151 652 0.217189 0.027323 0.197868 0.236509 2
152 646 0.215190 0.016017 0.203864 0.226516 2
153 627 0.208861 0.012719 0.199867 0.217855 2
154 625 0.208195 0.001413 0.207195 0.209194 2
155 625 0.208195 0.000471 0.207861 0.208528 2
156 624 0.207861 0.002827 0.205863 0.209860 2
157 618 0.205863 0.012248 0.197202 0.214524 2
158 617 0.205530 0.010835 0.197868 0.213191 2
159 614 0.204530 0.011306 0.196536 0.212525 2
160 613 0.204197 0.022141 0.188541 0.219853 2
161 610 0.203198 0.008480 0.197202 0.209194 2
162 604 0.201199 0.006595 0.196536 0.205863 2
163 603 0.200866 0.008009 0.195203 0.206529 2
164 602 0.200533 0.009422 0.193871 0.207195 2
165 601 0.200200 0.008009 0.194537 0.205863 2
166 601 0.200200 0.000471 0.199867 0.200533 2
167 599 0.199534 0.000471 0.199201 0.199867 2
168 598 0.199201 0.055589 0.159893 0.238508 2
169 598 0.199201 0.008480 0.193205 0.205197 2
170 594 0.197868 0.005653 0.193871 0.201865 2
171 594 0.197868 0.012248 0.189207 0.206529 2
172 593 0.197535 0.015546 0.186542 0.208528 2
173 592 0.197202 0.004711 0.193871 0.200533 2
174 592 0.197202 0.011306 0.189207 0.205197 2
175 592 0.197202 0.004711 0.193871 0.200533 2
176 591 0.196869 0.013662 0.187209 0.206529 2
177 590 0.196536 0.013191 0.187209 0.205863 2
178 586 0.195203 0.024497 0.177881 0.212525 2
179 584 0.194537 0.010364 0.187209 0.201865 2
180 582 0.193871 0.002827 0.191872 0.195869 2
181 576 0.191872 0.004711 0.188541 0.195203 2
182 573 0.190873 0.000471 0.190540 0.191206 2
183 572 0.190540 0.001884 0.189207 0.191872 2
184 571 0.190207 0.008951 0.183877 0.196536 2
185 562 0.187209 0.032976 0.163891 0.210526 2
186 556 0.185210 0.021670 0.169887 0.200533 2
187 549 0.182878 0.010835 0.175217 0.190540 2
188 542 0.180546 0.112120 0.101266 0.259827 2
189 518 0.172552 0.006595 0.167888 0.177215 2
190 510 0.169887 0.045225 0.137908 0.201865 2
191 508 0.169221 0.001884 0.167888 0.170553 2
192 490 0.163225 0.037687 0.136576 0.189873 2
193 487 0.162225 0.007066 0.157229 0.167222 2
194 475 0.158228 0.008951 0.151899 0.164557 2
195 461 0.153564 0.009893 0.146569 0.160560 2
196 453 0.150899 0.008009 0.145237 0.156562 2
197 449 0.149567 0.008951 0.143238 0.155896 2
198 448 0.149234 0.019786 0.135243 0.163225 2
199 446 0.148568 0.009422 0.141905 0.155230 2
200 444 0.147901 0.002827 0.145903 0.149900 2
201 439 0.146236 0.010835 0.138574 0.153897 2
202 438 0.145903 0.052762 0.108594 0.183211 2
203 438 0.145903 0.015075 0.135243 0.156562 2
204 433 0.144237 0.012719 0.135243 0.153231 2
205 433 0.144237 0.100342 0.073284 0.215190 2
206 432 0.143904 0.010364 0.136576 0.151233 2
207 429 0.142905 0.003298 0.140573 0.145237 2
208 424 0.141239 0.003769 0.138574 0.143904 2
209 423 0.140906 0.002355 0.139241 0.142572 2
210 416 0.138574 0.003769 0.135909 0.141239 2
211 416 0.138574 0.097987 0.069287 0.207861 2
212 415 0.138241 0.005182 0.134577 0.141905 2
213 412 0.137242 0.008480 0.131246 0.143238 2
214 412 0.137242 0.002827 0.135243 0.139241 2
215 410 0.136576 0.011306 0.128581 0.144570 2
216 409 0.136243 0.001413 0.135243 0.137242 2
217 404 0.134577 0.000000 0.134577 0.134577 2
218 402 0.133911 0.010364 0.126582 0.141239 2
219 401 0.133578 0.009893 0.126582 0.140573 2
220 400 0.133245 0.015075 0.122585 0.143904 2
221 389 0.129580 0.026852 0.110593 0.148568 2
222 389 0.129580 0.038158 0.102598 0.156562 2
223 384 0.127915 0.011306 0.119920 0.135909 2
224 383 0.127582 0.011777 0.119254 0.135909 2
225 367 0.122252 0.005182 0.118588 0.125916 2
226 362 0.120586 0.001884 0.119254 0.121919 2
227 357 0.118921 0.003298 0.116589 0.121252 2
228 356 0.118588 0.015075 0.107928 0.129247 2
229 352 0.117255 0.048051 0.083278 0.151233 2
230 351 0.116922 0.002355 0.115256 0.118588 2
231 345 0.114923 0.008009 0.109260 0.120586 2
232 338 0.112592 0.019786 0.098601 0.126582 2
233 328 0.109260 0.040514 0.080613 0.137908 2
234 317 0.105596 0.030621 0.083944 0.127249 2
235 315 0.104930 0.017430 0.092605 0.117255 2
236 310 0.103264 0.004711 0.099933 0.106596 2
237 307 0.102265 0.008951 0.095936 0.108594 2
238 289 0.096269 0.012719 0.087275 0.105263 2
239 285 0.094937 0.016488 0.083278 0.106596 2
240 281 0.093604 0.010835 0.085943 0.101266 2
241 276 0.091939 0.020728 0.077282 0.106596 2
242 273 0.090939 0.060771 0.047968 0.133911 2
243 269 0.089607 0.105053 0.015323 0.163891 2
244 268 0.089274 0.104582 0.015323 0.163225 2
245 251 0.083611 0.049464 0.048634 0.118588 2
246 246 0.081945 0.035803 0.056629 0.107262 2
247 239 0.079614 0.049464 0.044637 0.114590 2
248 236 0.078614 0.036745 0.052632 0.104597 2
-----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
--------------------------------------------------------------------------------------------
length{all}[1] 0.003595 0.000013 0.000001 0.010277 0.002553 1.000 2
length{all}[2] 0.007054 0.000026 0.000279 0.016937 0.005839 1.000 2
length{all}[3] 0.004609 0.000021 0.000003 0.013307 0.003261 1.002 2
length{all}[4] 0.003527 0.000013 0.000001 0.010949 0.002410 1.006 2
length{all}[5] 0.018531 0.000068 0.005222 0.034890 0.017620 1.000 2
length{all}[6] 0.003548 0.000013 0.000001 0.010957 0.002419 1.001 2
length{all}[7] 0.003365 0.000012 0.000003 0.010552 0.002275 1.001 2
length{all}[8] 0.010991 0.000044 0.000992 0.023773 0.009806 1.002 2
length{all}[9] 0.003880 0.000017 0.000000 0.011179 0.002602 1.002 2
length{all}[10] 0.007597 0.000034 0.000094 0.018491 0.006192 1.000 2
length{all}[11] 0.003583 0.000014 0.000001 0.010748 0.002405 1.000 2
length{all}[12] 0.003500 0.000013 0.000001 0.010519 0.002275 1.000 2
length{all}[13] 0.003676 0.000014 0.000003 0.011025 0.002535 1.000 2
length{all}[14] 0.003505 0.000011 0.000000 0.010259 0.002519 1.001 2
length{all}[15] 0.020076 0.000086 0.004271 0.038146 0.018874 1.000 2
length{all}[16] 0.011112 0.000042 0.001405 0.024223 0.010043 1.000 2
length{all}[17] 0.003649 0.000012 0.000002 0.010423 0.002530 1.000 2
length{all}[18] 0.003656 0.000015 0.000001 0.010951 0.002555 1.003 2
length{all}[19] 0.022776 0.000097 0.006077 0.042768 0.021345 1.000 2
length{all}[20] 0.003713 0.000014 0.000000 0.010842 0.002552 1.001 2
length{all}[21] 0.003578 0.000013 0.000000 0.010285 0.002459 1.000 2
length{all}[22] 0.006767 0.000025 0.000034 0.016585 0.005386 1.000 2
length{all}[23] 0.004430 0.000019 0.000000 0.013455 0.003065 1.002 2
length{all}[24] 0.007116 0.000030 0.000000 0.017199 0.005887 1.002 2
length{all}[25] 0.009642 0.000039 0.000030 0.021743 0.008618 1.002 2
length{all}[26] 0.003520 0.000013 0.000002 0.010693 0.002352 1.000 2
length{all}[27] 0.003615 0.000012 0.000001 0.010070 0.002638 1.000 2
length{all}[28] 0.003413 0.000014 0.000003 0.011112 0.002215 1.000 2
length{all}[29] 0.011335 0.000049 0.001007 0.025059 0.010009 1.001 2
length{all}[30] 0.019647 0.000104 0.002597 0.040601 0.017957 1.000 2
length{all}[31] 0.014771 0.000067 0.000820 0.029608 0.013691 1.002 2
length{all}[32] 0.003534 0.000014 0.000003 0.011548 0.002315 1.000 2
length{all}[33] 0.003706 0.000014 0.000005 0.011281 0.002567 1.000 2
length{all}[34] 0.014447 0.000056 0.002797 0.029728 0.012980 1.000 2
length{all}[35] 0.025600 0.000161 0.001188 0.049809 0.024410 1.011 2
length{all}[36] 0.003560 0.000013 0.000000 0.010883 0.002396 1.002 2
length{all}[37] 0.003876 0.000014 0.000005 0.011240 0.002784 1.000 2
length{all}[38] 0.024766 0.000105 0.007397 0.043832 0.023573 1.001 2
length{all}[39] 0.003602 0.000013 0.000004 0.010922 0.002563 1.002 2
length{all}[40] 0.007551 0.000029 0.000260 0.018218 0.006231 1.000 2
length{all}[41] 0.003590 0.000013 0.000003 0.011087 0.002514 1.005 2
length{all}[42] 0.003708 0.000013 0.000002 0.010984 0.002600 1.001 2
length{all}[43] 0.007301 0.000026 0.000109 0.017162 0.006302 1.000 2
length{all}[44] 0.003887 0.000016 0.000000 0.011662 0.002693 1.000 2
length{all}[45] 0.003771 0.000015 0.000000 0.011492 0.002640 1.000 2
length{all}[46] 0.003468 0.000011 0.000001 0.010137 0.002475 1.000 2
length{all}[47] 0.003686 0.000014 0.000000 0.011341 0.002483 1.003 2
length{all}[48] 0.003624 0.000014 0.000004 0.011639 0.002304 1.000 2
length{all}[49] 0.007021 0.000031 0.000114 0.017109 0.005732 1.000 2
length{all}[50] 0.003935 0.000016 0.000002 0.012195 0.002673 1.001 2
length{all}[51] 0.003564 0.000014 0.000001 0.010900 0.002370 1.001 2
length{all}[52] 0.003554 0.000012 0.000002 0.010472 0.002505 1.000 2
length{all}[53] 0.028293 0.000159 0.003656 0.052532 0.027400 1.010 2
length{all}[54] 0.035210 0.000215 0.009898 0.064775 0.033296 1.003 2
length{all}[55] 0.018569 0.000085 0.003578 0.036403 0.017110 1.000 2
length{all}[56] 0.003605 0.000013 0.000000 0.010659 0.002524 1.000 2
length{all}[57] 0.015319 0.000064 0.001160 0.029877 0.014122 1.003 2
length{all}[58] 0.003752 0.000013 0.000005 0.010992 0.002702 1.008 2
length{all}[59] 0.011024 0.000041 0.001433 0.023684 0.009802 1.000 2
length{all}[60] 0.010971 0.000043 0.001151 0.024193 0.009620 1.002 2
length{all}[61] 0.004839 0.000023 0.000014 0.013845 0.003427 1.005 2
length{all}[62] 0.007104 0.000025 0.000002 0.017126 0.006165 1.001 2
length{all}[63] 0.045614 0.000243 0.016904 0.076525 0.043015 1.000 2
length{all}[64] 0.003746 0.000014 0.000000 0.011365 0.002651 1.000 2
length{all}[65] 0.003613 0.000012 0.000003 0.010585 0.002567 1.003 2
length{all}[66] 0.028171 0.000151 0.006561 0.051991 0.026517 1.001 2
length{all}[67] 0.003904 0.000015 0.000002 0.011293 0.002754 1.002 2
length{all}[68] 0.044792 0.000230 0.017802 0.073189 0.043356 1.001 2
length{all}[69] 0.003769 0.000014 0.000001 0.010849 0.002744 1.000 2
length{all}[70] 0.026342 0.000113 0.008303 0.047861 0.025323 1.001 2
length{all}[71] 0.003870 0.000015 0.000000 0.011647 0.002602 1.000 2
length{all}[72] 0.003842 0.000015 0.000003 0.011456 0.002661 1.005 2
length{all}[73] 0.003561 0.000013 0.000001 0.010505 0.002465 1.000 2
length{all}[74] 0.012618 0.000049 0.002124 0.027466 0.011107 1.005 2
length{all}[75] 0.033190 0.000174 0.010455 0.058370 0.031271 1.001 2
length{all}[76] 0.003709 0.000013 0.000005 0.010890 0.002624 1.000 2
length{all}[77] 0.003588 0.000013 0.000001 0.011046 0.002390 1.001 2
length{all}[78] 0.007780 0.000035 0.000022 0.019467 0.006376 1.000 2
length{all}[79] 0.007156 0.000029 0.000039 0.017699 0.005951 1.000 2
length{all}[80] 0.003606 0.000014 0.000003 0.011367 0.002514 1.000 2
length{all}[81] 0.003618 0.000013 0.000001 0.011128 0.002301 1.000 2
length{all}[82] 0.003513 0.000013 0.000001 0.010750 0.002380 1.001 2
length{all}[83] 0.003471 0.000012 0.000000 0.010326 0.002397 1.000 2
length{all}[84] 0.036226 0.000328 0.003950 0.069679 0.033836 1.002 2
length{all}[85] 0.119644 0.001388 0.055449 0.197155 0.116153 1.000 2
length{all}[86] 0.003593 0.000013 0.000003 0.010838 0.002535 1.000 2
length{all}[87] 0.027467 0.000131 0.008489 0.049876 0.025789 1.002 2
length{all}[88] 0.003666 0.000013 0.000001 0.011069 0.002589 1.001 2
length{all}[89] 0.003623 0.000013 0.000002 0.011180 0.002483 1.000 2
length{all}[90] 0.017836 0.000087 0.002120 0.036127 0.016475 1.006 2
length{all}[91] 0.023537 0.000098 0.006835 0.043540 0.022596 1.002 2
length{all}[92] 0.025371 0.000121 0.005884 0.046264 0.023608 1.003 2
length{all}[93] 0.067514 0.000315 0.035357 0.102735 0.065534 1.000 2
length{all}[94] 0.031308 0.000151 0.009215 0.055145 0.030004 1.000 2
length{all}[95] 0.098862 0.001130 0.039496 0.164948 0.094432 1.000 2
length{all}[96] 0.033136 0.000137 0.011026 0.056158 0.032200 1.000 2
length{all}[97] 0.215563 0.001846 0.138272 0.298371 0.211607 1.001 2
length{all}[98] 0.018702 0.000077 0.003696 0.035393 0.017440 1.000 2
length{all}[99] 0.014789 0.000062 0.002331 0.030514 0.013243 1.000 2
length{all}[100] 0.028439 0.000139 0.009411 0.050826 0.027005 1.011 2
length{all}[101] 0.026425 0.000119 0.008097 0.048017 0.024706 1.000 2
length{all}[102] 0.022252 0.000110 0.005686 0.044246 0.020732 1.000 2
length{all}[103] 0.036270 0.000228 0.008236 0.065730 0.034541 1.005 2
length{all}[104] 0.017146 0.000081 0.002251 0.035129 0.015592 1.004 2
length{all}[105] 0.011197 0.000045 0.000404 0.023791 0.010037 1.001 2
length{all}[106] 0.022427 0.000130 0.002978 0.044659 0.020891 1.000 2
length{all}[107] 0.007136 0.000026 0.000274 0.017665 0.005940 1.002 2
length{all}[108] 0.018706 0.000097 0.002600 0.038557 0.017138 1.001 2
length{all}[109] 0.029165 0.000202 0.002473 0.055428 0.027265 1.004 2
length{all}[110] 0.019275 0.000094 0.003074 0.038134 0.018097 1.003 2
length{all}[111] 0.013856 0.000078 0.000109 0.030735 0.012332 1.000 2
length{all}[112] 0.010619 0.000042 0.001037 0.023120 0.009371 1.000 2
length{all}[113] 0.010248 0.000042 0.000140 0.022932 0.008747 1.000 2
length{all}[114] 0.006705 0.000024 0.000112 0.016784 0.005603 1.000 2
length{all}[115] 0.007250 0.000026 0.000072 0.017195 0.006063 1.000 2
length{all}[116] 0.009309 0.000045 0.000014 0.022166 0.007721 1.000 2
length{all}[117] 0.006972 0.000028 0.000003 0.017111 0.005922 1.000 2
length{all}[118] 0.017716 0.000088 0.002533 0.036087 0.016333 1.000 2
length{all}[119] 0.007602 0.000033 0.000033 0.018884 0.006451 1.004 2
length{all}[120] 0.011085 0.000055 0.000084 0.024944 0.009650 1.005 2
length{all}[121] 0.009496 0.000040 0.000010 0.021329 0.008369 1.004 2
length{all}[122] 0.007074 0.000033 0.000028 0.017995 0.005491 1.001 2
length{all}[123] 0.010241 0.000056 0.000005 0.023527 0.008721 1.000 2
length{all}[124] 0.007086 0.000025 0.000037 0.016492 0.005902 1.003 2
length{all}[125] 0.010606 0.000047 0.000690 0.023967 0.009031 1.001 2
length{all}[126] 0.003659 0.000013 0.000000 0.010675 0.002581 0.999 2
length{all}[127] 0.003360 0.000012 0.000002 0.010662 0.002359 0.999 2
length{all}[128] 0.003392 0.000012 0.000003 0.010093 0.002509 0.999 2
length{all}[129] 0.003848 0.000015 0.000003 0.010955 0.002754 0.999 2
length{all}[130] 0.003338 0.000011 0.000003 0.009726 0.002431 0.999 2
length{all}[131] 0.003787 0.000013 0.000001 0.011092 0.002751 1.004 2
length{all}[132] 0.006590 0.000025 0.000009 0.016542 0.005572 1.005 2
length{all}[133] 0.014146 0.000084 0.000383 0.031537 0.012469 1.018 2
length{all}[134] 0.008181 0.000038 0.000126 0.020179 0.006794 1.013 2
length{all}[135] 0.007471 0.000028 0.000373 0.017733 0.006243 1.001 2
length{all}[136] 0.003567 0.000013 0.000002 0.011321 0.002412 1.000 2
length{all}[137] 0.006679 0.000035 0.000000 0.018683 0.004974 0.999 2
length{all}[138] 0.003616 0.000014 0.000009 0.011526 0.002391 0.999 2
length{all}[139] 0.003615 0.000014 0.000001 0.011329 0.002365 1.001 2
length{all}[140] 0.004061 0.000016 0.000013 0.012001 0.002785 1.005 2
length{all}[141] 0.006453 0.000030 0.000001 0.017105 0.004955 1.003 2
length{all}[142] 0.009617 0.000050 0.000243 0.022360 0.008023 0.999 2
length{all}[143] 0.007021 0.000043 0.000000 0.020791 0.005099 0.999 2
length{all}[144] 0.012046 0.000069 0.000090 0.028422 0.010704 0.999 2
length{all}[145] 0.007075 0.000030 0.000045 0.017688 0.005854 1.010 2
length{all}[146] 0.015244 0.000119 0.000306 0.039546 0.012396 1.002 2
length{all}[147] 0.020263 0.000110 0.003423 0.041196 0.018932 1.042 2
length{all}[148] 0.004455 0.000021 0.000009 0.014331 0.003124 0.999 2
length{all}[149] 0.009102 0.000046 0.000079 0.022206 0.008048 1.000 2
length{all}[150] 0.010304 0.000059 0.000087 0.025492 0.008520 1.005 2
length{all}[151] 0.004899 0.000021 0.000003 0.014131 0.003680 1.001 2
length{all}[152] 0.006540 0.000029 0.000001 0.017781 0.005354 1.001 2
length{all}[153] 0.003979 0.000014 0.000003 0.011403 0.002785 0.999 2
length{all}[154] 0.003677 0.000012 0.000002 0.010701 0.002692 0.999 2
length{all}[155] 0.003512 0.000014 0.000010 0.010878 0.002302 0.998 2
length{all}[156] 0.003871 0.000015 0.000003 0.011312 0.002751 0.999 2
length{all}[157] 0.003620 0.000011 0.000000 0.009783 0.002666 1.000 2
length{all}[158] 0.003649 0.000017 0.000002 0.011390 0.002516 0.999 2
length{all}[159] 0.003484 0.000011 0.000010 0.009932 0.002555 1.002 2
length{all}[160] 0.004200 0.000018 0.000006 0.012254 0.003052 1.002 2
length{all}[161] 0.003853 0.000013 0.000001 0.010758 0.002853 1.001 2
length{all}[162] 0.003905 0.000015 0.000009 0.011330 0.002816 0.999 2
length{all}[163] 0.003365 0.000011 0.000010 0.010576 0.002315 1.001 2
length{all}[164] 0.003482 0.000012 0.000001 0.010850 0.002327 0.999 2
length{all}[165] 0.003273 0.000010 0.000008 0.009645 0.002392 0.998 2
length{all}[166] 0.003931 0.000016 0.000007 0.011669 0.002700 1.001 2
length{all}[167] 0.003500 0.000012 0.000014 0.010041 0.002487 1.013 2
length{all}[168] 0.006444 0.000026 0.000176 0.015225 0.005430 1.009 2
length{all}[169] 0.003547 0.000014 0.000000 0.010974 0.002343 1.000 2
length{all}[170] 0.003655 0.000012 0.000005 0.009913 0.002601 1.000 2
length{all}[171] 0.003579 0.000015 0.000012 0.010860 0.002301 1.001 2
length{all}[172] 0.004201 0.000020 0.000002 0.013071 0.002890 1.000 2
length{all}[173] 0.011507 0.000059 0.000212 0.025487 0.010208 1.002 2
length{all}[174] 0.003782 0.000014 0.000006 0.011176 0.002549 1.009 2
length{all}[175] 0.003835 0.000017 0.000015 0.012063 0.002595 0.998 2
length{all}[176] 0.003781 0.000013 0.000007 0.010855 0.002597 1.001 2
length{all}[177] 0.003606 0.000014 0.000002 0.011342 0.002430 1.006 2
length{all}[178] 0.003547 0.000012 0.000008 0.010158 0.002506 1.000 2
length{all}[179] 0.003437 0.000014 0.000004 0.011398 0.002159 0.999 2
length{all}[180] 0.003741 0.000016 0.000003 0.011933 0.002580 0.998 2
length{all}[181] 0.003487 0.000012 0.000008 0.010574 0.002326 1.002 2
length{all}[182] 0.003426 0.000012 0.000018 0.010105 0.002413 1.000 2
length{all}[183] 0.003457 0.000013 0.000015 0.009872 0.002421 0.999 2
length{all}[184] 0.003644 0.000013 0.000005 0.010955 0.002466 1.006 2
length{all}[185] 0.010715 0.000054 0.000108 0.024029 0.009139 0.999 2
length{all}[186] 0.005309 0.000020 0.000017 0.013971 0.004204 0.998 2
length{all}[187] 0.003539 0.000012 0.000030 0.010668 0.002580 1.002 2
length{all}[188] 0.018209 0.000101 0.000256 0.035388 0.016965 1.009 2
length{all}[189] 0.004313 0.000017 0.000019 0.012373 0.002909 0.999 2
length{all}[190] 0.003424 0.000013 0.000005 0.010125 0.002340 0.998 2
length{all}[191] 0.003736 0.000013 0.000003 0.011455 0.002585 1.007 2
length{all}[192] 0.012782 0.000072 0.000046 0.028684 0.010943 1.005 2
length{all}[193] 0.006844 0.000031 0.000001 0.017567 0.005517 1.018 2
length{all}[194] 0.004266 0.000017 0.000025 0.011503 0.003173 1.000 2
length{all}[195] 0.003650 0.000013 0.000001 0.010019 0.002717 1.006 2
length{all}[196] 0.003735 0.000016 0.000005 0.010686 0.002553 1.001 2
length{all}[197] 0.003461 0.000013 0.000010 0.011069 0.002352 0.998 2
length{all}[198] 0.003815 0.000018 0.000001 0.011388 0.002751 1.002 2
length{all}[199] 0.004001 0.000017 0.000025 0.011874 0.002985 0.998 2
length{all}[200] 0.003887 0.000014 0.000012 0.011139 0.002639 0.998 2
length{all}[201] 0.003745 0.000015 0.000024 0.012826 0.002500 0.998 2
length{all}[202] 0.011721 0.000046 0.000413 0.023239 0.010585 1.012 2
length{all}[203] 0.012232 0.000060 0.000414 0.026304 0.011083 0.998 2
length{all}[204] 0.004099 0.000017 0.000005 0.012287 0.002710 1.004 2
length{all}[205] 0.007801 0.000032 0.000298 0.019236 0.006212 1.003 2
length{all}[206] 0.003722 0.000013 0.000010 0.011378 0.002747 1.003 2
length{all}[207] 0.003539 0.000012 0.000001 0.011129 0.002347 1.008 2
length{all}[208] 0.003851 0.000016 0.000001 0.011043 0.002784 0.998 2
length{all}[209] 0.003560 0.000010 0.000002 0.009421 0.002549 0.998 2
length{all}[210] 0.003489 0.000012 0.000008 0.010749 0.002181 1.000 2
length{all}[211] 0.007535 0.000033 0.000049 0.019200 0.006404 0.999 2
length{all}[212] 0.003505 0.000011 0.000009 0.010548 0.002513 0.998 2
length{all}[213] 0.011228 0.000066 0.000030 0.026529 0.009556 1.017 2
length{all}[214] 0.003585 0.000015 0.000015 0.010882 0.002402 0.999 2
length{all}[215] 0.003665 0.000012 0.000001 0.011568 0.002772 0.998 2
length{all}[216] 0.003910 0.000016 0.000015 0.012374 0.002599 0.999 2
length{all}[217] 0.003698 0.000012 0.000001 0.011110 0.002544 0.998 2
length{all}[218] 0.003308 0.000011 0.000013 0.010438 0.002113 1.002 2
length{all}[219] 0.005574 0.000029 0.000007 0.017126 0.004059 1.009 2
length{all}[220] 0.005808 0.000025 0.000016 0.016301 0.004356 0.998 2
length{all}[221] 0.003662 0.000013 0.000013 0.011315 0.002563 1.001 2
length{all}[222] 0.007726 0.000034 0.000003 0.018770 0.006592 1.002 2
length{all}[223] 0.004164 0.000018 0.000016 0.012693 0.002956 0.999 2
length{all}[224] 0.009297 0.000048 0.000045 0.022151 0.008053 1.014 2
length{all}[225] 0.003774 0.000013 0.000011 0.010811 0.002681 0.997 2
length{all}[226] 0.003640 0.000012 0.000015 0.011616 0.002833 0.998 2
length{all}[227] 0.004617 0.000023 0.000016 0.013762 0.003155 0.997 2
length{all}[228] 0.004216 0.000020 0.000004 0.011975 0.002758 0.999 2
length{all}[229] 0.011784 0.000048 0.000313 0.023803 0.010812 1.000 2
length{all}[230] 0.004971 0.000021 0.000006 0.014325 0.003625 0.997 2
length{all}[231] 0.005604 0.000027 0.000074 0.016583 0.004109 1.022 2
length{all}[232] 0.003921 0.000014 0.000011 0.011448 0.002834 1.000 2
length{all}[233] 0.009212 0.000053 0.000006 0.023578 0.007088 1.051 2
length{all}[234] 0.006323 0.000029 0.000101 0.017176 0.004712 0.997 2
length{all}[235] 0.010274 0.000057 0.000097 0.022886 0.009234 1.003 2
length{all}[236] 0.003512 0.000010 0.000015 0.009501 0.002807 0.997 2
length{all}[237] 0.009007 0.000056 0.000064 0.024925 0.007221 0.997 2
length{all}[238] 0.005216 0.000021 0.000007 0.015206 0.003751 0.997 2
length{all}[239] 0.003391 0.000013 0.000006 0.009474 0.002476 1.006 2
length{all}[240] 0.003415 0.000011 0.000014 0.010628 0.002389 0.997 2
length{all}[241] 0.011245 0.000074 0.000128 0.030530 0.008934 1.002 2
length{all}[242] 0.009160 0.000045 0.000041 0.023096 0.007787 1.000 2
length{all}[243] 0.010960 0.000050 0.000028 0.026031 0.009128 1.017 2
length{all}[244] 0.009730 0.000043 0.000340 0.021931 0.008359 0.996 2
length{all}[245] 0.005639 0.000027 0.000034 0.015449 0.004085 1.000 2
length{all}[246] 0.010591 0.000054 0.000411 0.022770 0.009474 1.033 2
length{all}[247] 0.008800 0.000043 0.000162 0.020304 0.007828 1.014 2
length{all}[248] 0.009220 0.000042 0.000016 0.020374 0.008539 1.000 2
--------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.020138
Maximum standard deviation of split frequencies = 0.119657
Average PSRF for parameter values (excluding NA and >10.0) = 1.002
Maximum PSRF for parameter values = 1.051
Clade credibility values:
/--------------------------------------------------------------------- C52 (1)
|
|--------------------------------------------------------------------- C68 (8)
|
|--------------------------------------------------------------------- C96 (36)
|
|--------------------------------------------------------------------- C47 (42)
|
|--------------------------------------------------------------------- C50 (46)
|
|--------------------------------------------------------------------- C49 (48)
|
|--------------------------------------------------------------------- C51 (49)
|
|--------------------------------------------------------------------- C48 (73)
|
|--------------------------------------------------------------------- C100 (77)
|
| /----------------- C67 (2)
| |
| | /----------- C66 (3)
| | |
| |--65-+ /------ C59 (12)
| | | |
| | \-74-+------ C61 (56)
| | |
| | \------ C55 (80)
| |
| | /------ C69 (6)
| | |
| |----100---+------ C60 (45)
| | |
| | \------ C62 (52)
| |
| /-100-+----------------- C58 (23)
| | |
| | |----------------- C43 (38)
| | |
| | |----------------- C56 (51)
| | |
| | |----------------- C63 (62)
| | |
| | |----------------- C57 (69)
| | |
| | |----------------- C54 (79)
| /---------------100---------------+ |
| | | |----------------- C65 (82)
| | | |
| | | | /------ C41 (84)
| | | \----100---+
| | | \------ C53 (85)
| | |
| | |----------------------- C40 (39)
| | |
| | |----------------------- C102 (40)
| | |
| | \----------------------- C72 (60)
| |
| | /------ C11 (4)
| | |
| | |------ C9 (50)
| | |
| | /-------100------+------ C6 (58)
| | | |
| | | |------ C7 (67)
| | | |
| | | \------ C8 (89)
| | |
| | | /------ C16 (9)
| | | |
| | | |------ C19 (11)
+ | | |
| | | |------ C18 (13)
| | | |
| | | |------ C20 (14)
| | | |
| | |-------100------+------ C24 (17)
| | | |
| | | |------ C22 (18)
| | | |
| | | |------ C87 (26)
| | | |
| | | |------ C101 (41)
| | | |
| | | \------ C23 (76)
| | |
| | | /------ C75 (10)
| | | /-100+
| | | | \------ C78 (16)
| | | /--53-+
| | | | \----------- C95 (35)
| | | |
| | |--51-+ /------ C84 (20)
| | | | |
| | | | |------ C83 (21)
| | | \----99----+
| | | |------ C85 (27)
| | | |
| | | \------ C73 (64)
| | |
| | |----------------------- C77 (15)
| | /-100-+
| | | | /------ C25 (19)
| | | |-------98-------+
| | | | \------ C91 (70)
| /--75-+ | |
| | | | | /------ C86 (25)
| | | | | /-99-+
| | | | | | \------ C90 (61)
| | | | |-----70----+
| | | | | \----------- C82 (63)
| | | | |
| | | | |----------------------- C93 (30)
| | | | |
| | | | |----------------------- C92 (31)
| | | | |
| | | | | /------ C37 (32)
| | | | |-------100------+
| | | | | \------ C39 (33)
| | | | |
| | | | | /----------- C94 (37)
| | | | | |
| | | /-97-+ |-----99----+ /------ C76 (65)
| | | | | | \-98-+
| | | | | | \------ C74 (88)
| | | | | |
| | | | | |----------------------- C79 (53)
| | | | | |
| | | | | |----------------------- C98 (54)
| | | | | |
| | | | | |----------------------- C38 (55)
| | | | | |
| | | | | |----------------------- C88 (66)
| | | | | |
| | | | | |----------------------- C46 (68)
| | | /--95-+ | |
| | | | | | |----------------------- C32 (75)
| | | | | | |
| | | | | | |----------------------- C36 (87)
| | | | | | |
| | | | | | \----------------------- C71 (90)
| | | | | |
\--81-+ | | | | /------ C27 (24)
| | | | \----------100---------+
| | | | \------ C5 (78)
| | | |
| | /--90-+ | /------ C45 (43)
| | | | \-------------95------------+
| | | | \------ C4 (86)
| | | |
| | | | /------ C3 (34)
| | | |----------------84---------------+
| | /--85-+ | \------ C2 (71)
| | | | |
| | | | |---------------------------------------- C15 (57)
| | | | |
| | | | \---------------------------------------- C14 (59)
| | | |
| | | \---------------------------------------------- C31 (29)
| | |
| | |---------------------------------------------------- C13 (5)
| | |
| | | /------ C70 (7)
| | | |
| \-100+---------------------100---------------------+------ C34 (28)
| | |
| | \------ C35 (83)
| |
| | /------ C29 (22)
| | |
| | |------ C1 (47)
| |---------------------100---------------------+
| | |------ C28 (72)
| | |
| | \------ C30 (81)
| |
| \---------------------------------------------------- C97 (74)
|
\--------------------------------------------------------------- C104 (44)
Phylogram (based on average branch lengths):
/ C52 (1)
|
|-- C68 (8)
|
| C96 (36)
|
| C47 (42)
|
| C50 (46)
|
| C49 (48)
|
|- C51 (49)
|
| C48 (73)
|
| C100 (77)
|
| /- C67 (2)
| |
| |/- C66 (3)
| ||
| |+/- C59 (12)
| |||
| |\+- C61 (56)
| | |
| | \- C55 (80)
| |
| | /- C69 (6)
| | |
| |-+- C60 (45)
| | |
| | \- C62 (52)
| |
| /-----+- C58 (23)
| | |
| | |---- C43 (38)
| | |
| | | C56 (51)
| | |
| | |- C63 (62)
| | |
| | |- C57 (69)
| | |
| | |- C54 (79)
| /-----------+ |
| | | | C65 (82)
| | | |
| | | | /------ C41 (84)
| | | \-----------------+
| | | \---------------------- C53 (85)
| | |
| | | C40 (39)
| | |
| | |- C102 (40)
| | |
| | \-- C72 (60)
| |
| | /- C11 (4)
| | |
| | |- C9 (50)
| | |
| | /----+- C6 (58)
| | | |
| | | |- C7 (67)
| | | |
| | | \- C8 (89)
| | |
| | | /- C16 (9)
| | | |
| | | |- C19 (11)
+ | | |
| | | |- C18 (13)
| | | |
| | | |- C20 (14)
| | | |
| | |---+- C24 (17)
| | | |
| | | |- C22 (18)
| | | |
| | | |- C87 (26)
| | | |
| | | |- C101 (41)
| | | |
| | | \- C23 (76)
| | |
| | | /- C75 (10)
| | | /---+
| | | | \-- C78 (16)
| | |/-+
| | || \----- C95 (35)
| | ||
| | |+ /- C84 (20)
| | || |
| | || |- C83 (21)
| | |\-+
| | | |- C85 (27)
| | | |
| | | \- C73 (64)
| | |
| | |--- C77 (15)
| | /---------------------------------------+
| | | | /---- C25 (19)
| | | |--+
| | | | \----- C91 (70)
|/-+ | |
|| | | | /- C86 (25)
|| | | | /---+
|| | | | | \ C90 (61)
|| | | |--+
|| | | | \-------- C82 (63)
|| | | |
|| | | |--- C93 (30)
|| | | |
|| | | |-- C92 (31)
|| | | |
|| | | | / C37 (32)
|| | | |----+
|| | | | \ C39 (33)
|| | | |
|| | | | / C94 (37)
|| | | | |
|| | /----+ |--+/ C76 (65)
|| | | | | \+
|| | | | | \ C74 (88)
|| | | | |
|| | | | |----- C79 (53)
|| | | | |
|| | | | |------ C98 (54)
|| | | | |
|| | | | |--- C38 (55)
|| | | | |
|| | | | |----- C88 (66)
|| | | | |
|| | | | |-------- C46 (68)
|| | /---+ | |
|| | | | | |------ C32 (75)
|| | | | | |
|| | | | | |----- C36 (87)
|| | | | | |
|| | | | | \--- C71 (90)
|| | | | |
\+ | | | | /-- C27 (24)
| | | | \-----+
| | | | \-- C5 (78)
| | | |
| | /+ | /- C45 (43)
| | || \-+
| | || \- C4 (86)
| | ||
| | || /-- C3 (34)
| | ||-+
| | /-+| \ C2 (71)
| | | ||
| | | ||--- C15 (57)
| | | ||
| | | |\-- C14 (59)
| | | |
| | | \-- C31 (29)
| | |
| | |--- C13 (5)
| | |
| | | /- C70 (7)
| | | |
| \---+--+- C34 (28)
| | |
| | \- C35 (83)
| |
| | /- C29 (22)
| | |
| | |- C1 (47)
| |---+
| | |- C28 (72)
| | |
| | \- C30 (81)
| |
| \-- C97 (74)
|
\- C104 (44)
|--------| 0.050 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3002 trees sampled):
50 % credible set contains 1501 trees
90 % credible set contains 2702 trees
95 % credible set contains 2852 trees
99 % credible set contains 2972 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
Running FUBAR...
[2J[H /HYPHY 2.3.14.20190214beta(MP) for Linux on x86_64\
***************** TYPES OF STANDARD ANALYSES *****************
(1) Selection Analyses
(2) Evolutionary Hypothesis Testing
(3) Relative evolutionary rate inference
(4) Coevolutionary analysis
(5) Basic Analyses
(6) Codon Selection Analyses
(7) Compartmentalization
(8) Data File Tools
(9) Miscellaneous
(10) Model Comparison
(11) Kernel Analysis Tools
(12) Molecular Clock
(13) Phylogeny Reconstruction
(14) Positive Selection
(15) Recombination
(16) Selection/Recombination
(17) Relative Rate
(18) Relative Ratio
(19) Substitution Rates
Please select type of analyses you want to list (or press ENTER to process custom batch file):[2J[H***************** FILES IN 'Selection Analyses' *****************
(1) [MEME] Test for episodic site-level selection using MEME (Mixed Effects Model of Evolution).
(2) [FEL] Test for pervasive site-level selection using FEL (Fixed Effects Likelihood).
(3) [SLAC] Test for pervasive site-level selection using SLAC (Single Likelihood Ancestor Counting).
(4) [FUBAR] Test for pervasive site-level selection using FUBAR (Fast Unconstrained Bayesian AppRoximation for inferring selection).
(5) [BUSTED] Test for episodic gene-wide selection using BUSTED (Branch-site Unrestricted Statistical Test of Episodic Diversification).
(6) [aBSREL] Test for lineage-specific evolution using the branch-site method aBS-REL (Adaptive Branch-Site Random Effects Likelihood).
(7) [RELAX] Test for relaxation of selection pressure along a specified set of test branches using RELAX (a random effects test of selection relaxation).
Please select the analysis you would like to perform (or press ENTER to return to the list of analysis types):
Analysis Description
--------------------
Perform a Fast Unbiased AppRoximate Bayesian (FUBAR) analysis of a
coding sequence alignment to determine whether some sites have been
subject to pervasive purifying or diversifying selection. v2.1
introduces two more methods for estimating the posterior distribution of
grid weights: collapsed Gibbs MCMC (faster) and 0-th order Variation
Bayes approximation (fastest). Please note that a FUBAR analysis
generates a cache and a results JSON file in the same directory as
directory as the original alignment. HyPhy needs to have write
privileges to this directory. For example if the original file is in
/home/sergei/FUBAR/data/pol.nex then at the end of a FUBAR run, there
will also exist FUBAR-generated files
/home/sergei/FUBAR/data/pol.nex.FUBAR.json,
/home/sergei/FUBAR/data/pol.nex.fubrar.cache. They also provide
checkpointing so that a partially completed analysis can be restarted.
- __Requirements__: in-frame codon alignment (possibly partitioned) and a phylogenetic tree
(one per partition)
- __Citation__: FUBAR: a fast, unconstrained bayesian approximation for inferring
selection (2013), Mol Biol Evol. 30(5):1196-205
- __Written by__: Sergei L Kosakovsky Pond
- __Contact Information__: spond@temple.edu
- __Analysis Version__: 2.1
####Choose Genetic Code
1. [**Universal**] Universal code. (Genebank transl_table=1).
2. [**Vertebrate mtDNA**] Vertebrate mitochondrial DNA code. (Genebank transl_table=2).
3. [**Yeast mtDNA**] Yeast mitochondrial DNA code. (Genebank transl_table=3).
4. [**Mold/Protozoan mtDNA**] Mold, Protozoan and Coelenterate mitochondrial DNA and the Mycloplasma/Spiroplasma code. (Genebank transl_table=4).
5. [**Invertebrate mtDNA**] Invertebrate mitochondrial DNA code. (Genebank transl_table=5).
6. [**Ciliate Nuclear**] Ciliate, Dasycladacean and Hexamita Nuclear code. (Genebank transl_table=6).
7. [**Echinoderm mtDNA**] Echinoderm mitochondrial DNA code. (Genebank transl_table=9).
8. [**Euplotid Nuclear**] Euplotid Nuclear code. (Genebank transl_table=10).
9. [**Alt. Yeast Nuclear**] Alternative Yeast Nuclear code. (Genebank transl_table=12).
10. [**Ascidian mtDNA**] Ascidian mitochondrial DNA code. (Genebank transl_table=13).
11. [**Flatworm mtDNA**] Flatworm mitochondrial DNA code. (Genebank transl_table=14).
12. [**Blepharisma Nuclear**] Blepharisma Nuclear code. (Genebank transl_table=15).
13. [**Chlorophycean mtDNA**] Chlorophycean Mitochondrial Code (transl_table=16).
14. [**Trematode mtDNA**] Trematode Mitochondrial Code (transl_table=21).
15. [**Scenedesmus obliquus mtDNA**] Scenedesmus obliquus mitochondrial Code (transl_table=22).
16. [**Thraustochytrium mtDNA**] Thraustochytrium Mitochondrial Code (transl_table=23).
17. [**Pterobranchia mtDNA**] Pterobranchia Mitochondrial Code (transl_table=24).
18. [**SR1 and Gracilibacteria**] Candidate Division SR1 and Gracilibacteria Code (transl_table=25).
19. [**Pachysolen Nuclear**] Pachysolen tannophilus Nuclear Code (transl_table=26).
>Please choose an option (or press q to cancel selection):
>Select a coding sequence alignment file (`/usr/local/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/`)
>A tree was found in the data file: `(C52,C68,C96,C47,C50,C49,C51,C48,C100,((((C67,(C66,(C59,C61,C55)),(C69,C60,C62),C58,C43,C56,C63,C57,C54,C65,(C41,C53)),C40,C102,C72),(((((((C11,C9,C6,C7,C8),(C16,C19,C18,C20,C24,C22,C87,C101,C23),(((C75,C78),C95),(C84,C83,C85,C73)),C77,(C25,C91),((C86,C90),C82),C93,C92,(C37,C39),(C94,(C76,C74)),C79,C98,C38,C88,C46,C32,C36,C71),(C27,C5)),(C45,C4)),(C3,C2),C15,C14),C31),C13,(C70,C34,C35),(C29,C1,C28,C30),C97)),C104))`
>Would you like to use it (y/n)?
>Loaded a multiple sequence alignment with **90** sequences, **85** codons, and **1** partitions from `/data//pss_subsets/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1.fna`
> FUBAR will write cache and result files to _/data//pss_subsets/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1.fna.FUBAR.cache_ and _/data//pss_subsets/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1.fna.FUBAR.json_, respectively
> Number of grid points per dimension (total number is D^2) (permissible range = [5,50], default value = 20, integer):
####Posterior estimation method
1. [**Metropolis-Hastings**] Full Metropolis-Hastings MCMC algorithm (slowest, original 2013 paper implementation)
2. [**Collapsed Gibbs**] Collapsed Gibbs sampler (intermediate speed)
3. [**Variational Bayes**] 0-th order Variational Bayes approximations (fastest, recommended default)
>Please choose an option (or press q to cancel selection):> The concentration parameter of the Dirichlet prior (permissible range = [0.001,1], default value = 0.5):
### Obtaining branch lengths and nucleotide substitution biases under the nucleotide GTR model
* Log(L) = -2286.80, AIC-c = 4833.07 (129 estimated parameters)
* Tree length (expected substitutions/site) for partition 1 : 2.180
### Computing the phylogenetic likelihood function on the grid
* Determining appropriate tree scaling based on the best score from a 20 x 20 rate grid
* Best scaling achieved for
* synonymous rate = 2.815
* non-synonymous rate = 0.571
* Computing conditional site likelihoods on a 20 x 20 rate grid
### Running an iterative zeroth order variational Bayes procedure to estimate the posterior mean of rate weights
* Using the following settings
* Dirichlet alpha : 0.5
### Tabulating site-level results
| Codon | Partition | alpha | beta |Posterior prob for positive selection|
|:--------------:|:--------------:|:--------------:|:--------------:|:-----------------------------------:|
| 79 | 1 | 0.642 | 2.187 | Pos. posterior = 0.9315 |
| 81 | 1 | 0.827 | 2.677 | Pos. posterior = 0.9263 |
----
## FUBAR inferred 2 sites subject to diversifying positive selection at posterior probability >= 0.9
Of these, 0.14 are expected to be false positives (95% confidence interval of 0-1 )
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.10 sec, SCORE=999, Nseq=90, Len=85
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_12 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGK------LL
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_19 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_18 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSADAVLDELDRAYFAVTLKVEFKTGK------LL
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTRR------LL
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGR------LL
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_1 MSQYRSCMDIVKSIDTSVDAVLDELDRTYFAVTLKVEFKTGK------LL
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGR------LL
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_11 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGR------LL
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_13 -------MGIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTRR------LL
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVQFKTGK------LL
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_16 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 -------MDTIKSIGISVDAVLDELNSIAFAVTLKVLFTSGK------LL
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_19 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_18 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGR------LL
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 -------METVKSIGISVDAVLDELNSTAFAVTLKVLFTSGK------LL
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 -------MDTVKSIGISVDAVLDELDTIAFAVTLKVLFNSGN------LL
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 -------MDTVKSIGISVDAVLDELNSIAFAVTLKVLFTSGK------LL
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 -------MDTVKSIGISVDAVLDELNSIAFAVTLKVLFTSGK------LL
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 -------MDIVKSIDIFVDAVLDELDRAYFAVTLKVEFKTGK------LL
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 -------MDIVKSIDTSVDAVLDEFDRTYFAVTLKVEFKTGK------LL
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFNPGK------LL
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 -------MDTVKSIGISVDAVLDELNSIAFAVTLKVLFTSGK------LL
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_11 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 -------MDTVKSIGISVDAVLDELDSTAFAVTLKVLFTSGK------LL
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGR------LL
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 -------MDTVKSIGISVDAVLDELDSIAFAITLKVLFTSGR------LL
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 -------MDTVKSIGISVDAVLDELDSIAFAITLKVLFTSGR------LL
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 -------MDTVKSIGISVDAVLDELNSIAFAVTLKALFKSGK------LL
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGK------LL
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_13 ----MSCIDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_10 -------MDIVKSINTSVDAVLDELDCAYFAVTLKVEFKTGK------LL
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_102 -------MDIVKSINTSVDAVLDELDCAYFAVTLKIEFKTGK------LL
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_101 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_17 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGK------LL
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_15 -------MDIVKSIDTSVDAVLDDFDRAYFAVTLKVEFKTGK------LL
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_104 -------MDIVKSIDTSVDAVLDELDCAYFAVTLKVEFKTGK------LL
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_10 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGK------LL
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_1 -------MDIVKSIDIFVDAVLDELDRAYFAVTLKVEFKTGK------LL
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_19 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGK------LL
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_11 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGK------LL
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGR------LL
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_16 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTRR------LL
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 -------MDTVKSIGTSVDAVLDEFDSIAFAVTLKVLFTSGK------LL
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 -------MDTVKFIGISVDAVLDELDSIAFAVTLKVLFNSVK------LL
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGR------LL
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_15 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGR------LL
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_14 -------MDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 -------MDIVKSINTSVDAVLDGLDCAYFAVTLKVEFKTGK------LL
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFNSGK------LL
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 -------MDTVKSIGISVDAVLDELDTIAFAVTLKVLFISGR------LL
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 -------MDTVKSIGISVDAVLDELNSIAFAVTLKVLFTSGK------LL
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 -------MDTVKSIGISVDAVLDELDSIAFAITLKVLFTSGK------LL
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 -------MDTVKSIGISVDAALDELESIAFAVTLKVLFNSGK------LL
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_16 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLCNSGK------LL
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_17 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 -------MDAVKSIGISVDAVLDELDSIAFAVTLKVLFNSGK------LL
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 -------MDIVKSIDIFVDAVLDELDRAYFAVTLKVEFKTGK------LL
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_18 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGK------LL
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 -------MDTVKSIGVSVDAVLDELNSIAFAVTLKVLFNSGK------LL
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_100 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGK------LL
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_14 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_15 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 -------MDIVKSIDIFVDAVLDELDRAYFAVTLKVEFKTGK------LL
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_11 -------MDIVKSINTYVDAVLDEFDCTYFAVTLKVEFKTG---------
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_13 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTKQSKRDYRKT
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSVDAVLDEFDRAYFAVTLKVEFKTGK------LL
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 -------MDTVKSIGISVDAVLDELNSIAFAVTLKVLFTSGK------LL
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 -------MDTVKSIGISVDAVLDELDSIAFAITLKVLFTSGK------LL
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL
: :* * .**.** :: **:*** .
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_12 VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV-
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_19 VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_18 VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 VCIGFGDTILEAKDKAYAKLGLSIIEEVNSHTVV-
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 VCIGFGDTFEEAEQKAYAKLQLD-IEESFTHKTV-
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_1 VCIGFGDTLFEAKEKAYAKLGLSIVEEVNSHTVV-
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 VCIGFGDTFEEAEQKAYAKLQLD-IEESFTHKTV-
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_11 VCIGFGDTFEEAEQKAYAKLQLD-IEESFTHKTV-
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_13 VCIGCGDTLLEAKDKAYAKLGLSIIEEVNSHTVV-
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 VCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV-
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV-
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_16 VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV-
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 VCIGFGDTFEEAEQKAYAKLQLD-IEEPFNHTTV-
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_19 VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV-
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_18 VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV-
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV-
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 VCIGFGDTFEEAEQKAYAKLQLD-IEESPNYTTV-
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 VCIGFGDTFEEAEQKAYAKLQLD-IEEPFNHTTV-
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV-
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV-
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 VCIGFGDTFEEAEQKAYAKLQLD-IEESPNHTTV-
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 VCIGFGDTFEEAEQKAYAKLQLD-IEEPPNHTTI-
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 VCIGFGDTFEEAEQKAYAKLQLD-IEEPPNHTTI-
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 VCIGFGDTLLEAKDKAYAKLGLSSIEEVNSHTVV-
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 VCIGFGDTLFEAKEKAYAKLGLSIVEEVNSHTVV-
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 VCIGFGDTFEEAEQKAYAKLQLD-IEESPNSTTV-
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV-
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 VCIGFGDTFEEAEQKAYAKLQLD-IEEPPNHTTI-
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 VCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV-
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_11 VCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV-
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 VCIGFGDTFEEAEQKAYAKLQLD-IEESPNHTTV-
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 VCIGFGDTFEEAEQKAYAKLQLD-IEESPNYTTV-
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 VCIGFGDTFEEAEQKAYAKFQLD-IEESTNHTTV-
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 VCIGFGDTFEEAEQKAYAKFQLD-IEESTNHTTV-
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 VCIGFGDTFEEAEQKAYAKLQLD-IEEPSNHTTV-
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV-
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 VCIGFGDTFEEAEQKAYAKLQLD-IEESPNYTTV-
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_13 VCIGFGDTLLVV------------IEEVNTQNPKH
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_10 VCIGFGDTLLAARDKAYAKLGLSIIEEVNTQNPKH
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_102 VCIGFGDTLLAARDKAYAKLGLSIIEEVNTQNPKH
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_101 VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV-
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_17 VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV-
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_15 VCIGSGDTLLEAKDKAYAKLGLSIIEEVNSHTVV-
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_104 VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV-
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_10 VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV-
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_1 VCIGFGDTLLEAKDKAYAKLGLSFIEEVNSHTVV-
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_19 VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV-
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_11 VCIGFGDTLLAAKGKAYAKLGLSIIEEVNSHIVV-
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 VCIGFGDTFEEAEQKAYAKLQLD-IEESFTHKTV-
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_16 VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 VCIGFGDTFQEAEQKAYAKLQLD-IEEPLNPTTV-
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 VCIGFGDTFEEAEQKAYAKLQLA-IEESPNYTTV-
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 VCIGFGDTFEEAEQKAYAKLQLD-IEESPNHTTV-
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_15 VCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV-
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 VCIGFGDTFEEAEQKAYAKLQLD-IEESFTHKTV-
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_14 VCIGFGDTPLEAKDKAYAKLGFSIIEEVNSHTVV-
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 VCIGFGDTLLAARDKAYAKLGPSIIEEVNTQNPKH
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 VCIGFGDTFEEAEQKAYAKLQLD-IEESPNSTTV-
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 VCIGFGDTFEEAEQKAYAKLQLD-IEESSNSTTV-
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 VCIGFGDTFEEAEQKAYAKLQLD-IEEPPNHTTI-
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 VCIGFGDTFEEAEQKAYAKLQLD-IEESPNYTTV-
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 VCIGFGDTFEEAEQKAYAKLQLD-IEESPNHTTV-
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_16 VCIGFGDTFEEAEQKAYAKLQLG-IEESPNYTTV-
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_17 VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 VCIGFGDTFEEAEQKAYAKLQLD-IEESPNYTTV-
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 VCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV-
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 VCIGFGDTLLEAKDKAYAKLGLSFIEEVNSHTVV-
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_18 VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV-
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 VCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV-
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 VCIGFGDTFEEAEQKAYAKLQLD-VEESPNHTTV-
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV-
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_100 VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV-
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_14 VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPRH
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_15 VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 VCIGFGDTLLEAKDKAYAKLGLSFIEEVNSHTVV-
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 VCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV-
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_11 ---TFVYRFW-------------------------
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_13 VILNFENDWWTFS----------------------
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_1 VCIGSGDTLLEAKDKAYAKLGLSIIEEVNSHTVV-
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 VCIGFGDTFEEAEQKAYAKLQLD-IEESPNHTTV-
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 VCIGFGDTFEEAEQKAYAKLQLD-IEESPNYTTV-
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 VCIGFGDTFEEAEQKAYAKLQLD-IEESPNYTTV-
>TGEV_USA_HB_1988_NSP3a_ASV64287_1_1988_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTTACACATCCGTAGATGCTGTACTTGACGAACTTGATTGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCTGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATATAGTTGTT--- >TGEV_USA_Minnesota148_2013_NSP3a_ASV64385_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCTGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTTGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >TGEV_USA_Minnesota141_2007_NSP3a_ASV64323_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCTGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 ATGAGTCATTACAGGTCTTGTATGGACATTGTCAAATCCATTGACACATCCGCAGACGCTGTACTTGACGAACTTGATCGTGCATACTTTGCTGTAACTCTTAAAGTAGAGTTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACAATTCTTGAGGCTAAGGATAAAGCATATGCTAAACTTGGTCTCTCTATTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >TGEV_USA_Minnesota152_2014_NSP3a_ASV64421_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCAGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACTCGTAGG------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >TGEV_USA_Minnesota150_2013_NSP3a_ASV64403_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCTGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTTGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCCATTGGCATCTCTGTAGACGCTGTACTTGACGAGTTAGATTCTATTGCTTTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTTTACTCATAAGACTGTT--- >23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_1 ATGAGTCAATACAGGTCTTGTATGGACATTGTCAAATCTATTGATACATCCGTAGACGCTGTACTTGACGAATTAGACCGCACTTATTTTGCTGTAACTCTTAAAGTAGAATTCAAGACTGGTAAA------------------CTTCTTGTTTGCATAGGTTTTGGTGATACACTTTTTGAGGCTAAAGAAAAAGCTTATGCTAAACTTGGTCTCTCTATTGTTGAAGAAGTCAATAGTCATACAGTTGTT--- >26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCCATTGGCATCTCTGTAGACGCTGTACTTGACGAGTTAGATTCTATTGCTTTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTTTACTCATAAGACTGTT--- >TGEV_USA_Tennessee144_2008_NSP3a_ASV64350_1_2008_04_15_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTTAAATCCATTAATACATCCGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >TGEV_USA_SouthDakota154_2014_NSP3a_ASV64439_1_2014_02_05_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCTGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTTGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >67F_ORF_3a_AJO27004_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCCATTGGCATCTCTGTAGACGCTGTACTTGACGAGTTAGATTCTATTGCTTTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTTTACTCATAAGACTGTT--- >A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1 ---------------------ATGGGCATTGTCAAATCTATTGACACGTCCGTAGACGCTGTACTTGACGAACTTGATCGTGCGTACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------CTACTTGTGTGTATAGGTTGTGGTGACACACTTCTTGAGGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >TGEV_USA_Wisconsin151_2014_NSP3a_ASV64412_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCAGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACTCGTAGG------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >TN_449_NA_AFG19739_1_NA_NA_Dog_Alphacoronavirus_1 ATGAGTCATTACAGGTCTTGTATGGACATTGTCAAATCTATTGACACATCCGTAGACGCTGTACTTGACGAACTTGATCGTGCATATTTTGCTGTGACTCTTAAAGTAGAATTCAAGACTGGTAAA------------------CTACTTGTGTGTATAGGTTTTGGTGACACACTTCTCGAGGCTAAGGACAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >TGEV_USA_Z_1986_NSP3a_ASV64278_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTTACACATCCGTAGATGCTGTACTTGACGAACTTGATTGTGCATACTTTGCTGTAACTCTTAAAGTACAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACACTTCTTGCTGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATATAGTTGTT--- >Cat1_day28_deletion_NA_AMD11187_1_2013_Belgium_Cat_Alphacoronavirus_1 ---------------------ATGGACACCGTCAAGTCTATTGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGATTCCATTGCATTTGCTGTAACACTTAAAGTTTTATTTACCTCTGGAAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAGCAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTCTAATCATACGACTGTT--- >UU15_NA_ACT10917_1_2007_07_13_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTATCAAGTCTATTGGCATCTCTGTGGACGCTGTGCTTGACGAATTAAATTCCATTGCATTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAATTGGAT---ATTGAAGAGCCGTTTAATCATACGACTGTT--- >Cat2_day21_deletion_NA_AMD11154_1_2013_Belgium_Cat_Alphacoronavirus_1 ---------------------ATGGACACCGTCAAGTCTATTGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGATTCCATTGCATTTGCTGTAACACTTAAAGTTTTATTTACCTCTGGAAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAGCAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTCTAATCATACGACTGTT--- >Cat1_day28_withoutdeletion_NA_AMD11198_1_2013_Belgium_Cat_Alphacoronavirus_1 ---------------------ATGGACACCGTCAAGTCTATTGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGATTCCATTGCATTTGCTGTAACACTTAAAGTTTTATTTACCTCTGGAAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAGCAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTCTAATCATACGACTGTT--- >Cat2_day21_withoutdeletion_NA_AMD11165_1_2013_Belgium_Cat_Alphacoronavirus_1 ---------------------ATGGACACCGTCAAGTCTATTGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGATTCCATTGCATTTGCTGTAACACTTAAAGTTTTATTTACCTCTGGAAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAGCAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTCTAATCATACGACTGTT--- >UU16_NA_ACT10928_1_2007_06_07_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGAATCTCTGTGGATGCCGTACTTGACGAGTTAGACTCCATTGCATTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGCCTAATTATACGACTGTT--- >UU18_NA_ADL71456_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGAAACTGTCAAGTCTATTGGCATCTCTGTGGACGCTGTGCTTGACGAATTAAATTCCACTGCATTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAATTGGAT---ATTGAAGAGCCGTTTAATCATACGACTGTT--- >Cat3_day9_NA_AMD11176_1_2013_Belgium_Cat_Alphacoronavirus_1 ---------------------ATGGACACCGTCAAGTCTATTGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGATTCCATTGCATTTGCTGTAACACTTAAAGTTTTATTTACCTCTGGAAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAGCAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTCTAATCATACGACTGTT--- >Cat3_day28_deletion_NA_AMD11220_1_2013_Belgium_Cat_Alphacoronavirus_1 ---------------------ATGGACACCGTCAAGTCTATTGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGATTCCATTGCATTTGCTGTAACACTTAAAGTTTTATTTACCTCTGGAAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAGCAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTCTAATCATACGACTGTT--- >Cat_1_Karlslunde_NA_ASU62500_1_2015_02_01_Denmark_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCCATCGGCATCTCTGTTGACGCTGTACTTGACGAATTAGATACCATTGCGTTTGCTGTAACACTTAAAGTGTTATTCAATTCTGGTAAT------------------TTACTTGTGTGTATAGGTTTTGGTGATACCTTTGAGGAGGCTGAACAAAAGGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGCCTAATCATACGACTGTT--- >UU22_NA_ADC35462_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGCATCTCTGTGGACGCTGTACTTGACGAGTTAAACTCCATTGCATTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGCCGCCTAATCATACGACTATT--- >UU21_NA_ADL71467_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGCATCTCTGTGGACGCTGTACTTGACGAGTTAAACTCCATTGCATTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGCCGCCTAATCATACGACTATT--- >FCoVWSU791146_P8_ORF3a_AGZ84527_1_2011_USA_Cat_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCTATTGACATATTCGTAGACGCTGTACTTGACGAACTTGACCGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------CTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGAGGCTAAGGACAAAGCGTATGCTAAGCTTGGTCTCTCCTCTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >DF_2_R3i_ORF3a_AFH55112_1_NA_NA_Cat_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCTATTGATACATCCGTAGACGCTGTACTTGACGAATTTGACCGTACTTATTTTGCTGTAACTCTTAAAGTAGAATTCAAGACTGGTAAA------------------CTTCTTGTTTGCATAGGTTTTGGTGATACACTTTTTGAGGCTAAAGAAAAAGCTTATGCTAAACTTGGTCTCTCTATTGTTGAAGAAGTCAATAGTCATACAGTTGTT--- >UU30_NA_ADO39851_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGCATCTCTGTGGACGCTGTACTTGACGAGTTAGACTCCATTGCTTTTGCTGTGACACTTAAAGTATTATTTAATCCTGGAAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAAGAGGCTGAACAAAAAGCTTATGCCAAGCTTCAGCTGGAT---ATTGAAGAGTCGCCTAATTCTACGACTGTT--- >UU3_NA_ACT10960_1_1998_03_10_USA_Cat_Alphacoronavirus_1 ---------------------ATGGACACCGTCAAGTCTATTGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGATTCCATTGCATTTGCTGTAACACTTAAAGTTTTATTTACCTCTGGAAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAGCAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTCTAATCATACGACTGTT--- >UU23_NA_ADC35473_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGCATCTCTGTGGACGCTGTACTTGACGAGTTAAACTCCATTGCATTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGCCGCCTAATCATACGACTATT--- >HLJ_071_NA_ASB15739_1_2016_07_01_China_Dog_Alphacoronavirus_1 ATGAGTCATTACAGGTCTTGTATGGACATTGTCAAATCTATTGACACATCCGTAGACGCTGTACTTGACGAACTTGATCGTGCATATTTTGCTGTGACTCTTAAAGTAGAATTCAAGACTGGTAAA------------------CTACTTGTGTGTATAGGTTTTGGTGACACACTTCTCGAGGCTAAGGACAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >FCoV_NTU156_P_2007_NA_ACS44219_1_2007_09_Taiwan_Cat_Alphacoronavirus_1 ATGAGTCATTACAGGTCTTGTATGGACATTGTCAAATCTATTGACACATCCGTAGACGCTGTGCTTGACGAACTTGATCGTGCATACTTTGCTGTAACTCTTAAAGTAGAGTTTAAGACTGGTAAA------------------CTACTTGTGTGTATAGGTTTTGGTGATACACTTCTTGAGGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCACACAGTTGTT--- >UU54_NA_AEK25522_1_2010_03_12_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATCGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGACTCCACTGCGTTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAAGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAATCGCCTAATCATACGACTGTT--- >UU5_NA_ACT10907_1_2007_03_07_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATCGGCATCTCTGTGGACGCTGTACTTGACGAGTTAGATTCCATTGCATTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTCGAAGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGCCTAATTATACGACTGTT--- >HLJ_HRB_2016_10_NA_AUG98120_1_2016_11_China_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATCGGCATCTCTGTTGACGCTGTACTTGACGAATTAGATTCCATTGCATTCGCTATAACACTTAAAGTATTATTTACCTCTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAAGAGGCTGAACAAAAAGCTTATGCCAAATTTCAGCTGGAT---ATTGAAGAGTCGACTAATCATACGACTGTT--- >HLJ_HRB_2016_13_NA_AUG98142_1_2016_11_China_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATCGGCATCTCTGTTGACGCTGTACTTGACGAATTAGATTCCATTGCATTCGCTATAACACTTAAAGTATTATTTACCTCTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAAGAGGCTGAACAAAAAGCTTATGCCAAATTTCAGCTGGAT---ATTGAAGAGTCGACTAATCATACGACTGTT--- >UU7_NA_ACT10877_1_2007_04_25_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGCATCTCTGTAGACGCTGTACTTGACGAATTAAATTCCATTGCATTTGCTGTAACACTTAAAGCATTATTTAAGTCTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTCGAGGAGGCTGAGCAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGCCGTCTAATCATACGACTGTT--- >WH_1_nsp3a_ADY39741_1_NA_China_Swine_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTTACACATCCGTAGATGCTGTACTTGACGAACTTGATTGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCTGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATATAGTTGTT--- >UU8_NA_ACT10897_1_2007_05_24_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGATTCCATAGCTTTTGCTGTAACACTTAAAGTATTATTTACTTCTGGCAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGCCTAATTATACGACTGTT--- >PRCV_USA_Minnesota_46140_2016_ORF3a_ASV45149_1_2016_11_01_USA_Unknown_Alphacoronavirus_1 ------------ATGTCCTGTATAGACATTGTCAAATCCATTAATACATCCGTGGACGCTGTACTTGACGAATTTGATTGTGCATATTTCGCTGTTACTCTTAAAGTGGAATTTAAGACTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGTGGTT------------------------------------ATTGAAGAAGTAAACACACAAAATCCAAAGCAT >JS2012_ORF3a_AMB66489_1_2012_China_Swine_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCCGTAGATGCTGTACTTGACGAACTTGATTGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >partially_attenuated_Miller_M60_NA_ABG89302_1_1987_USA_Swine_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCCGTAGATGCTGTACTTGACGAACTTGATTGTGCATACTTTGCTGTAACTCTTAAAATAGAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >inoculum_NA_AMD11131_1_2013_Belgium_Cat_Alphacoronavirus_1 ---------------------ATGGACACCGTCAAGTCTATTGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGATTCCATTGCATTTGCTGTAACACTTAAAGTTTTATTTACCTCTGGAAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAGCAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTCTAATCATACGACTGTT--- >SC_Y_nsp3a_ABD97836_1_NA_China_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTTACACATCCGTAGATGCTGTACTTGACGAACTTGATTGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCTGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATATAGTTGTT--- >S378_NS3a_AFX81109_1_1978_USA_Dog_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCTATTGACACATCCGTAGACGCTGTACTTGACGACTTTGATCGCGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAAACTGGTAAA------------------CTACTTGTGTGTATAGGTTCTGGTGATACACTTCTTGAGGCTAAGGACAAAGCGTATGCTAAACTTGGTCTCTCTATTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >virulent_Purdue_NA_ABG89331_1_1952_USA_Swine_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTGACACATCCGTAGATGCTGTACTTGACGAACTTGATTGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCTGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATATAGTTGTT--- >TGEV_HX_NA_AGM75127_1_2012_05_05_China_Swine_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTTACACATCCGTAGATGCTGTACTTGACGAACTTGATTGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCTGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATATAGTTGTT--- >171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCTATTGACATATTCGTAGACGCTGTACTTGACGAACTTGACCGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------CTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGAGGCTAAGGACAAAGCGTATGCTAAGCTTGGTCTCTCCTTTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >TGEV_AHHF_NA_AQT01350_1_2015_12_22_China_Swine_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTTACACATCCGTAGATGCTGTACTTGACGAACTTGATTGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCTGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATATAGTTGTT--- >TGEV_Mex_145_2008_NSP3a_ASV64359_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTTACACATCCGTAGATGCTGTACTTGACGAACTTGATTGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCTGCTAAGGGTAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATATAGTTGTT--- >65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCCATTGGCATCTCTGTAGACGCTGTACTTGACGAGTTAGATTCTATTGCTTTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTTTACTCATAAGACTGTT--- >TGEV_USA_Iowa143_2008_NSP3a_ASV64341_1_2008_03_06_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCCGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >TGEV_USA_Minnesota153_2014_NSP3a_ASV64430_1_2014_02_04_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCAGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACTCGTAGG------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >UU17_NA_ADL71447_1_2007_07_17_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGATACTGTCAAGTCTATTGGCACCTCTGTGGACGCTGTACTTGACGAGTTTGATTCTATTGCATTTGCTGTAACACTTAAAGTATTATTTACTTCCGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTCAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGCCGCTTAATCCTACGACTGTT--- >XXN_NA_QDM36988_1_2018_04_China_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTTCATTGGCATCTCTGTAGACGCCGTACTTGACGAATTAGATTCCATTGCTTTTGCTGTAACACTTAAAGTTTTATTTAACTCTGTTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGCT---ATTGAGGAGTCGCCTAATTATACGACTGTT--- >HLJ_HRB_2016_11_NA_AUG98131_1_2016_11_China_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCCATCGGCATCTCTGTCGACGCTGTACTGGACGAGTTAGACTCCATTGCATTTGCTGTAACACTTAAAGTATTATTTACCTCTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGCCTAATCATACGACTGTT--- >CCoV_NTU336_F_2008_ORF3a_ADB28908_1_2008_11_Taiwan_Dog_Alphacoronavirus_1 ATGAGTCATTACAGGTCTTGTATGGACATTGTCAAATCTATTGACACATCCGTAGACGCTGTACTTGACGAACTTGATCGTGCATATTTTGCTGTAACTCTTAAAGTAGAGTTCAAAACTGGTAAA------------------CTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGAGGCTAAGGATAAAGCATATGCTAAACTTGGTCTCTCTATTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCCATTGGCATCTCTGTAGACGCTGTACTTGACGAGTTAGATTCTATTGCTTTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTTTACTCATAAGACTGTT--- >CB_05_ORF3a_AKA65830_1_2005_Italy_Dog_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCTATTGACACATCCGTAGACGCTGTACTTGACGAACTTGATCGTGCATACTTTGCTGTAACTCTTAAAGTAGAGTTTAAGACTGGTAAA------------------CTACTTGTGTGTATAGGTTTTGGTGATACACCTCTTGAGGCTAAGGATAAAGCATATGCTAAACTTGGTTTCTCTATTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >TS_nsp3a_ABC72415_1_NA_NA_Swine_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCCGTAGATGCTGTACTTGACGGACTTGATTGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCCCTCCATTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >UU40_NA_ADO39818_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGCATCTCTGTGGACGCTGTACTTGACGAGTTAGACTCCATTGCTTTTGCTGTGACACTTAAAGTGTTATTTAATTCTGGAAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAAGAGGCTGAACAAAAAGCTTATGCCAAGCTTCAGCTGGAT---ATTGAAGAGTCGCCTAATTCTACGACTGTT--- >TGEV_USA_NorthCarolina140_2007_NSP3a_ASV64314_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCCGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACACTCCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >UU20_NA_ADO39840_1_2007_08_23_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGCATCTCTGTAGACGCCGTGCTTGACGAATTAGATACTATTGCGTTTGCTGTAACACTTAAAGTGTTATTTATTTCTGGTAGA------------------CTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAAGAGGCTGAACAAAAAGCTTATGCCAAGCTTCAGCTGGAT---ATTGAAGAGTCGTCTAATTCTACGACTGTT--- >UNKNOWN_HQ012372_NA_ADL71498_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGCATCTCTGTGGACGCTGTACTTGACGAGTTAAACTCCATTGCATTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGCCGCCTAATCATACGACTATT--- >UU11_NA_ACT10866_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGATTCCATAGCTTTTGCTATAACACTTAAAGTATTATTTACTTCTGGCAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGCCTAATTATACGACTGTT--- >UU24_NA_ADL71477_1_2008_01_03_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGCATCTCTGTCGACGCCGCACTTGACGAATTAGAGTCCATTGCATTTGCTGTAACACTTAAAGTGTTATTTAATTCTGGAAAA------------------CTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGCCTAATCATACGACTGTT--- >RM_NA_ACT10855_1_2002_01_28_USA_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGCATCTCTGTAGACGCTGTACTTGACGAGTTAGACTCCATAGCGTTTGCTGTAACACTTAAAGTCCTATGTAATTCCGGAAAG------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAAGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGGT---ATTGAGGAGTCGCCTAATTATACGACTGTT--- >TGEV_USA_Minnesota138_2006_NSP3a_ASV64296_1_2006_11_08_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCCGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >UU47_NA_AEK25512_1_2010_07_14_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACGCTGTCAAGTCCATCGGCATCTCTGTTGACGCTGTACTTGACGAATTAGACTCCATTGCGTTTGCTGTAACACTCAAAGTATTATTTAATTCTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGACACCTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCACCTAATTATACGACTGTT--- >2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 ATGAGTCATTACAGGTCTTGTATGGACATTGTCAAATCCATTGACACATCCGTAGACGCTGTACTTGACGAACTTGATCGTGCATACTTTGCTGTAACTCTTAAAGTAGAGTTTAAGACTGGTAAA------------------CTACTTGTGTGTATAGGTTTTGGTGATACACTTCTTGAGGCTAAGGATAAAGCATATGCTAAACTTGGTCTCTCTATTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >FCoVWSU791146_P1_ORF3a_AGZ84517_1_2011_USA_Cat_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCTATTGACATATTCGTAGACGCTGTACTTGACGAACTTGACCGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------CTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGAGGCTAAGGACAAAGCGTATGCTAAGCTTGGTCTCTCCTTTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >SHXB_NA_AKA60055_1_2013_03_07_China_Swine_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTTACACATCCGTAGATGCTGTACTTGACGAACTTGATTGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCTGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATATAGTTGTT--- >WSU_79_1683_NA_AFH58020_1_NA_NA_Unknown_Alphacoronavirus_1 ATGAGTCACTACAGATCTTGTATGGATATTGTCAAATCTATTGACACATCCGTAGACGCTGTACTTGACGAACTTGATCGTGCATACTTTGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------CTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGAGGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >Felis_catus_NLD_UU88_2010_NS3a_AGT52081_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCCATTGGCGTTTCTGTAGACGCTGTACTTGACGAGTTAAATTCCATTGCATTTGCTGTAACACTTAAAGTGTTATTTAATTCTGGCAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTCGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGTTGGAT---GTTGAAGAGTCGCCTAATCATACGACTGTT--- >Cat3_day28_withoutdeletion_NA_AMD11231_1_2013_Belgium_Cat_Alphacoronavirus_1 ---------------------ATGGACACCGTCAAGTCTATTGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGATTCCATTGCATTTGCTGTAACACTTAAAGTTTTATTTACCTCTGGAAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAGCAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTCTAATCATACGACTGTT--- >attenuated_Purdue_P115_NA_ABG89322_1_NA_NA_Swine_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTTACACATCCGTAGATGCTGTACTTGACGAACTTGATTGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCTGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATATAGTTGTT--- >TGEV_USA_Illinois146_2008_NSP3a_ASV64368_1_2008_04_09_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCCGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAGGCAT >TGEV_USA_Illinois149_2013_NSP3a_ASV64394_1_2013_02_28_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCTGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTTGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >FCoVWSU791146_P50_ORF3a_AGZ84537_1_2011_USA_Cat_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCTATTGACATATTCGTAGACGCTGTACTTGACGAACTTGACCGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------CTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGAGGCTAAGGACAAAGCGTATGCTAAGCTTGGTCTCTCCTTTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >TGEV_USA_NorthCarolina142_2007_NSP3a_ASV64332_1_2007_02_16_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCCGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >HLJ_072_NA_ASB15749_1_2016_07_01_China_Dog_Alphacoronavirus_1 ATGAGTCATTACAGGTCTTGTATGGACATTGTCAAATCTATTGACACATCCGTAGACGCTGTACTTGACGAACTTGATCGTGCATATTTTGCTGTGACTCTTAAAGTAGAATTCAAGACTGGTAAA------------------CTACTTGTGTGTATAGGTTTTGGTGACACACTTCTCGAGGCTAAGGACAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >OH7269_ORF3a_AKV62756_1_2014_07_24_USA_Swine_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATACGTGGACGCTGTACTTGACGAATTTGATTGTACATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACTGGT------------------------------------ACGTTTGTGTATAGGTTTTGG--------------------------------------------------------------------------- >TGEV_USA_Illinois139_2006_NSP3a_ASV64305_1_2006_11_17_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCCGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACAAAACAATCAAAGAGAGATTATAGAAAAACTGTCATTCTAAACTTTGAAAATGATTGGTGGACTTTTTCT------------------------------------------------------------------ >1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_1 ATGAGTCATTACAGGTCTTGTATGGACATTGTCAAATCTATTGACACATCCGTAGACGCTGTACTTGACGAATTTGATCGCGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAAACTGGTAAA------------------CTACTTGTGTGTATAGGTTCTGGTGATACACTTCTTGAGGCTAAGGACAAAGCGTATGCTAAACTTGGTCTCTCTATTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >HLJ_DQ_2016_01_NA_ASB16888_1_2016_10_China_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCCATCGGCATCTCTGTAGACGCCGTACTTGACGAGTTAAATTCCATTGCATTTGCTGTAACACTTAAAGTTCTATTCACTTCTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAAGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGCCTAATCATACGACTGTT--- >UU10_NA_ACT10938_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGATTCCATAGCTTTTGCTATAACACTTAAAGTATTATTTACTTCTGGCAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGCCTAATTATACGACTGTT--- >UG_FH8_NA_ASU62489_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 ---------------------ATGGATACTGTCAAGTCTATTGGCATCTCTGTGGACGCAGTACTTGACGAGTTAGATTCCATTGCATTTGCTGTAACACTTAAAGTATTATTTACTTCCGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTTGAT---ATTGAAGAGTCGCCTAATTATACGACTGTT---
>TGEV_USA_HB_1988_NSP3a_ASV64287_1_1988_USA_Unknown_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGK------LL VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV- >TGEV_USA_Minnesota148_2013_NSP3a_ASV64385_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >TGEV_USA_Minnesota141_2007_NSP3a_ASV64323_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSADAVLDELDRAYFAVTLKVEFKTGK------LL VCIGFGDTILEAKDKAYAKLGLSIIEEVNSHTVV- >TGEV_USA_Minnesota152_2014_NSP3a_ASV64421_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTRR------LL VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >TGEV_USA_Minnesota150_2013_NSP3a_ASV64403_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGR------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESFTHKTV- >23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_1 MSQYRSCMDIVKSIDTSVDAVLDELDRTYFAVTLKVEFKTGK------LL VCIGFGDTLFEAKEKAYAKLGLSIVEEVNSHTVV- >26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGR------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESFTHKTV- >TGEV_USA_Tennessee144_2008_NSP3a_ASV64350_1_2008_04_15_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >TGEV_USA_SouthDakota154_2014_NSP3a_ASV64439_1_2014_02_05_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >67F_ORF_3a_AJO27004_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGR------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESFTHKTV- >A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1 -------MGIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL VCIGCGDTLLEAKDKAYAKLGLSIIEEVNSHTVV- >TGEV_USA_Wisconsin151_2014_NSP3a_ASV64412_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTRR------LL VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >TN_449_NA_AFG19739_1_NA_NA_Dog_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL VCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV- >TGEV_USA_Z_1986_NSP3a_ASV64278_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVQFKTGK------LL VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV- >Cat1_day28_deletion_NA_AMD11187_1_2013_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV- >UU15_NA_ACT10917_1_2007_07_13_Netherlands_Cat_Alphacoronavirus_1 -------MDTIKSIGISVDAVLDELNSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEEPFNHTTV- >Cat2_day21_deletion_NA_AMD11154_1_2013_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV- >Cat1_day28_withoutdeletion_NA_AMD11198_1_2013_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV- >Cat2_day21_withoutdeletion_NA_AMD11165_1_2013_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV- >UU16_NA_ACT10928_1_2007_06_07_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGR------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESPNYTTV- >UU18_NA_ADL71456_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1 -------METVKSIGISVDAVLDELNSTAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEEPFNHTTV- >Cat3_day9_NA_AMD11176_1_2013_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV- >Cat3_day28_deletion_NA_AMD11220_1_2013_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV- >Cat_1_Karlslunde_NA_ASU62500_1_2015_02_01_Denmark_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDTIAFAVTLKVLFNSGN------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESPNHTTV- >UU22_NA_ADC35462_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELNSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEEPPNHTTI- >UU21_NA_ADL71467_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELNSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEEPPNHTTI- >FCoVWSU791146_P8_ORF3a_AGZ84527_1_2011_USA_Cat_Alphacoronavirus_1 -------MDIVKSIDIFVDAVLDELDRAYFAVTLKVEFKTGK------LL VCIGFGDTLLEAKDKAYAKLGLSSIEEVNSHTVV- >DF_2_R3i_ORF3a_AFH55112_1_NA_NA_Cat_Alphacoronavirus_1 -------MDIVKSIDTSVDAVLDEFDRTYFAVTLKVEFKTGK------LL VCIGFGDTLFEAKEKAYAKLGLSIVEEVNSHTVV- >UU30_NA_ADO39851_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFNPGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESPNSTTV- >UU3_NA_ACT10960_1_1998_03_10_USA_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV- >UU23_NA_ADC35473_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELNSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEEPPNHTTI- >HLJ_071_NA_ASB15739_1_2016_07_01_China_Dog_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL VCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV- >FCoV_NTU156_P_2007_NA_ACS44219_1_2007_09_Taiwan_Cat_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL VCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV- >UU54_NA_AEK25522_1_2010_03_12_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSTAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESPNHTTV- >UU5_NA_ACT10907_1_2007_03_07_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGR------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESPNYTTV- >HLJ_HRB_2016_10_NA_AUG98120_1_2016_11_China_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAITLKVLFTSGR------LL VCIGFGDTFEEAEQKAYAKFQLD-IEESTNHTTV- >HLJ_HRB_2016_13_NA_AUG98142_1_2016_11_China_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAITLKVLFTSGR------LL VCIGFGDTFEEAEQKAYAKFQLD-IEESTNHTTV- >UU7_NA_ACT10877_1_2007_04_25_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELNSIAFAVTLKALFKSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEEPSNHTTV- >WH_1_nsp3a_ADY39741_1_NA_China_Swine_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGK------LL VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV- >UU8_NA_ACT10897_1_2007_05_24_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESPNYTTV- >PRCV_USA_Minnesota_46140_2016_ORF3a_ASV45149_1_2016_11_01_USA_Unknown_Alphacoronavirus_1 ----MSCIDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL VCIGFGDTLLVV------------IEEVNTQNPKH >JS2012_ORF3a_AMB66489_1_2012_China_Swine_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDELDCAYFAVTLKVEFKTGK------LL VCIGFGDTLLAARDKAYAKLGLSIIEEVNTQNPKH >partially_attenuated_Miller_M60_NA_ABG89302_1_1987_USA_Swine_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDELDCAYFAVTLKIEFKTGK------LL VCIGFGDTLLAARDKAYAKLGLSIIEEVNTQNPKH >inoculum_NA_AMD11131_1_2013_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV- >SC_Y_nsp3a_ABD97836_1_NA_China_Unknown_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGK------LL VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV- >S378_NS3a_AFX81109_1_1978_USA_Dog_Alphacoronavirus_1 -------MDIVKSIDTSVDAVLDDFDRAYFAVTLKVEFKTGK------LL VCIGSGDTLLEAKDKAYAKLGLSIIEEVNSHTVV- >virulent_Purdue_NA_ABG89331_1_1952_USA_Swine_Alphacoronavirus_1 -------MDIVKSIDTSVDAVLDELDCAYFAVTLKVEFKTGK------LL VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV- >TGEV_HX_NA_AGM75127_1_2012_05_05_China_Swine_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGK------LL VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV- >171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_1 -------MDIVKSIDIFVDAVLDELDRAYFAVTLKVEFKTGK------LL VCIGFGDTLLEAKDKAYAKLGLSFIEEVNSHTVV- >TGEV_AHHF_NA_AQT01350_1_2015_12_22_China_Swine_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGK------LL VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV- >TGEV_Mex_145_2008_NSP3a_ASV64359_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGK------LL VCIGFGDTLLAAKGKAYAKLGLSIIEEVNSHIVV- >65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGR------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESFTHKTV- >TGEV_USA_Iowa143_2008_NSP3a_ASV64341_1_2008_03_06_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >TGEV_USA_Minnesota153_2014_NSP3a_ASV64430_1_2014_02_04_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTRR------LL VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >UU17_NA_ADL71447_1_2007_07_17_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGTSVDAVLDEFDSIAFAVTLKVLFTSGK------LL VCIGFGDTFQEAEQKAYAKLQLD-IEEPLNPTTV- >XXN_NA_QDM36988_1_2018_04_China_Cat_Alphacoronavirus_1 -------MDTVKFIGISVDAVLDELDSIAFAVTLKVLFNSVK------LL VCIGFGDTFEEAEQKAYAKLQLA-IEESPNYTTV- >HLJ_HRB_2016_11_NA_AUG98131_1_2016_11_China_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGR------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESPNHTTV- >CCoV_NTU336_F_2008_ORF3a_ADB28908_1_2008_11_Taiwan_Dog_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL VCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV- >27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGR------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESFTHKTV- >CB_05_ORF3a_AKA65830_1_2005_Italy_Dog_Alphacoronavirus_1 -------MDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL VCIGFGDTPLEAKDKAYAKLGFSIIEEVNSHTVV- >TS_nsp3a_ABC72415_1_NA_NA_Swine_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDGLDCAYFAVTLKVEFKTGK------LL VCIGFGDTLLAARDKAYAKLGPSIIEEVNTQNPKH >UU40_NA_ADO39818_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFNSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESPNSTTV- >TGEV_USA_NorthCarolina140_2007_NSP3a_ASV64314_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >UU20_NA_ADO39840_1_2007_08_23_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDTIAFAVTLKVLFISGR------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESSNSTTV- >UNKNOWN_HQ012372_NA_ADL71498_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELNSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEEPPNHTTI- >UU11_NA_ACT10866_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAITLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESPNYTTV- >UU24_NA_ADL71477_1_2008_01_03_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAALDELESIAFAVTLKVLFNSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESPNHTTV- >RM_NA_ACT10855_1_2002_01_28_USA_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLCNSGK------LL VCIGFGDTFEEAEQKAYAKLQLG-IEESPNYTTV- >TGEV_USA_Minnesota138_2006_NSP3a_ASV64296_1_2006_11_08_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >UU47_NA_AEK25512_1_2010_07_14_Netherlands_Cat_Alphacoronavirus_1 -------MDAVKSIGISVDAVLDELDSIAFAVTLKVLFNSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESPNYTTV- >2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL VCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV- >FCoVWSU791146_P1_ORF3a_AGZ84517_1_2011_USA_Cat_Alphacoronavirus_1 -------MDIVKSIDIFVDAVLDELDRAYFAVTLKVEFKTGK------LL VCIGFGDTLLEAKDKAYAKLGLSFIEEVNSHTVV- >SHXB_NA_AKA60055_1_2013_03_07_China_Swine_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGK------LL VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV- >WSU_79_1683_NA_AFH58020_1_NA_NA_Unknown_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL VCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV- >Felis_catus_NLD_UU88_2010_NS3a_AGT52081_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGVSVDAVLDELNSIAFAVTLKVLFNSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-VEESPNHTTV- >Cat3_day28_withoutdeletion_NA_AMD11231_1_2013_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV- >attenuated_Purdue_P115_NA_ABG89322_1_NA_NA_Swine_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGK------LL VCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV- >TGEV_USA_Illinois146_2008_NSP3a_ASV64368_1_2008_04_09_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPRH >TGEV_USA_Illinois149_2013_NSP3a_ASV64394_1_2013_02_28_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >FCoVWSU791146_P50_ORF3a_AGZ84537_1_2011_USA_Cat_Alphacoronavirus_1 -------MDIVKSIDIFVDAVLDELDRAYFAVTLKVEFKTGK------LL VCIGFGDTLLEAKDKAYAKLGLSFIEEVNSHTVV- >TGEV_USA_NorthCarolina142_2007_NSP3a_ASV64332_1_2007_02_16_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGR------LL VCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >HLJ_072_NA_ASB15749_1_2016_07_01_China_Dog_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGK------LL VCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV- >OH7269_ORF3a_AKV62756_1_2014_07_24_USA_Swine_Alphacoronavirus_1 -------MDIVKSINTYVDAVLDEFDCTYFAVTLKVEFKTG--------- ---TFVYRFW------------------------- >TGEV_USA_Illinois139_2006_NSP3a_ASV64305_1_2006_11_17_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTKQSKRDYRKT VILNFENDWWTFS---------------------- >1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSVDAVLDEFDRAYFAVTLKVEFKTGK------LL VCIGSGDTLLEAKDKAYAKLGLSIIEEVNSHTVV- >HLJ_DQ_2016_01_NA_ASB16888_1_2016_10_China_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELNSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESPNHTTV- >UU10_NA_ACT10938_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAITLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESPNYTTV- >UG_FH8_NA_ASU62489_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGK------LL VCIGFGDTFEEAEQKAYAKLQLD-IEESPNYTTV-
Reading sequence file /data//pss_subsets/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/fasta/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1
Found 90 sequences of length 255
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 19.4%
Found 105 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0% 99.8%100.0%
Using a window size of 80 with k as 33
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 52 polymorphic sites
**p-Value(s)**
----------
NSS: 6.80e-02 (1000 permutations)
Max Chi^2: 0.00e+00 (1000 permutations)
PHI (Permutation): 6.15e-01 (1000 permutations)
PHI (Normal): 6.45e-01
#NEXUS
[ID: 8572060077]
begin taxa;
dimensions ntax=90;
taxlabels
TGEV_USA_HB_1988_NSP3a_ASV64287_1_1988_USA_Unknown_Alphacoronavirus_1
TGEV_USA_Tennessee144_2008_NSP3a_ASV64350_1_2008_04_15_USA_Unknown_Alphacoronavirus_1
TGEV_USA_SouthDakota154_2014_NSP3a_ASV64439_1_2014_02_05_USA_Unknown_Alphacoronavirus_1
67F_ORF_3a_AJO27004_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1
TGEV_USA_Wisconsin151_2014_NSP3a_ASV64412_1_2014_01_17_USA_Unknown_Alphacoronavirus_1
TN_449_NA_AFG19739_1_NA_NA_Dog_Alphacoronavirus_1
TGEV_USA_Z_1986_NSP3a_ASV64278_1_2006_12_08_USA_Unknown_Alphacoronavirus_1
Cat1_day28_deletion_NA_AMD11187_1_2013_Belgium_Cat_Alphacoronavirus_1
UU15_NA_ACT10917_1_2007_07_13_Netherlands_Cat_Alphacoronavirus_1
Cat2_day21_deletion_NA_AMD11154_1_2013_Belgium_Cat_Alphacoronavirus_1
TGEV_USA_Minnesota148_2013_NSP3a_ASV64385_1_2013_01_04_USA_Unknown_Alphacoronavirus_1
Cat1_day28_withoutdeletion_NA_AMD11198_1_2013_Belgium_Cat_Alphacoronavirus_1
Cat2_day21_withoutdeletion_NA_AMD11165_1_2013_Belgium_Cat_Alphacoronavirus_1
UU16_NA_ACT10928_1_2007_06_07_Netherlands_Cat_Alphacoronavirus_1
UU18_NA_ADL71456_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1
Cat3_day9_NA_AMD11176_1_2013_Belgium_Cat_Alphacoronavirus_1
Cat3_day28_deletion_NA_AMD11220_1_2013_Belgium_Cat_Alphacoronavirus_1
Cat_1_Karlslunde_NA_ASU62500_1_2015_02_01_Denmark_Cat_Alphacoronavirus_1
UU22_NA_ADC35462_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1
UU21_NA_ADL71467_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1
FCoVWSU791146_P8_ORF3a_AGZ84527_1_2011_USA_Cat_Alphacoronavirus_1
TGEV_USA_Minnesota141_2007_NSP3a_ASV64323_1_2007_02_08_USA_Unknown_Alphacoronavirus_1
DF_2_R3i_ORF3a_AFH55112_1_NA_NA_Cat_Alphacoronavirus_1
UU30_NA_ADO39851_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1
UU3_NA_ACT10960_1_1998_03_10_USA_Cat_Alphacoronavirus_1
UU23_NA_ADC35473_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1
HLJ_071_NA_ASB15739_1_2016_07_01_China_Dog_Alphacoronavirus_1
FCoV_NTU156_P_2007_NA_ACS44219_1_2007_09_Taiwan_Cat_Alphacoronavirus_1
UU54_NA_AEK25522_1_2010_03_12_Netherlands_Cat_Alphacoronavirus_1
UU5_NA_ACT10907_1_2007_03_07_Netherlands_Cat_Alphacoronavirus_1
HLJ_HRB_2016_10_NA_AUG98120_1_2016_11_China_Cat_Alphacoronavirus_1
HLJ_HRB_2016_13_NA_AUG98142_1_2016_11_China_Cat_Alphacoronavirus_1
2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_1
UU7_NA_ACT10877_1_2007_04_25_Netherlands_Cat_Alphacoronavirus_1
WH_1_nsp3a_ADY39741_1_NA_China_Swine_Alphacoronavirus_1
UU8_NA_ACT10897_1_2007_05_24_Netherlands_Cat_Alphacoronavirus_1
PRCV_USA_Minnesota_46140_2016_ORF3a_ASV45149_1_2016_11_01_USA_Unknown_Alphacoronavirus_1
JS2012_ORF3a_AMB66489_1_2012_China_Swine_Alphacoronavirus_1
partially_attenuated_Miller_M60_NA_ABG89302_1_1987_USA_Swine_Alphacoronavirus_1
inoculum_NA_AMD11131_1_2013_Belgium_Cat_Alphacoronavirus_1
SC_Y_nsp3a_ABD97836_1_NA_China_Unknown_Alphacoronavirus_1
S378_NS3a_AFX81109_1_1978_USA_Dog_Alphacoronavirus_1
virulent_Purdue_NA_ABG89331_1_1952_USA_Swine_Alphacoronavirus_1
TGEV_USA_Minnesota152_2014_NSP3a_ASV64421_1_2014_01_31_USA_Unknown_Alphacoronavirus_1
TGEV_HX_NA_AGM75127_1_2012_05_05_China_Swine_Alphacoronavirus_1
171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_1
TGEV_AHHF_NA_AQT01350_1_2015_12_22_China_Swine_Alphacoronavirus_1
TGEV_Mex_145_2008_NSP3a_ASV64359_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1
65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
TGEV_USA_Iowa143_2008_NSP3a_ASV64341_1_2008_03_06_USA_Unknown_Alphacoronavirus_1
TGEV_USA_Minnesota153_2014_NSP3a_ASV64430_1_2014_02_04_USA_Unknown_Alphacoronavirus_1
UU17_NA_ADL71447_1_2007_07_17_Netherlands_Cat_Alphacoronavirus_1
XXN_NA_QDM36988_1_2018_04_China_Cat_Alphacoronavirus_1
HLJ_HRB_2016_11_NA_AUG98131_1_2016_11_China_Cat_Alphacoronavirus_1
TGEV_USA_Minnesota150_2013_NSP3a_ASV64403_1_2013_03_01_USA_Unknown_Alphacoronavirus_1
CCoV_NTU336_F_2008_ORF3a_ADB28908_1_2008_11_Taiwan_Dog_Alphacoronavirus_1
27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
CB_05_ORF3a_AKA65830_1_2005_Italy_Dog_Alphacoronavirus_1
TS_nsp3a_ABC72415_1_NA_NA_Swine_Alphacoronavirus_1
UU40_NA_ADO39818_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1
TGEV_USA_NorthCarolina140_2007_NSP3a_ASV64314_1_2007_02_08_USA_Unknown_Alphacoronavirus_1
UU20_NA_ADO39840_1_2007_08_23_Netherlands_Cat_Alphacoronavirus_1
UNKNOWN_HQ012372_NA_ADL71498_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1
UU11_NA_ACT10866_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1
UU24_NA_ADL71477_1_2008_01_03_Netherlands_Cat_Alphacoronavirus_1
28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
RM_NA_ACT10855_1_2002_01_28_USA_Cat_Alphacoronavirus_1
TGEV_USA_Minnesota138_2006_NSP3a_ASV64296_1_2006_11_08_USA_Unknown_Alphacoronavirus_1
UU47_NA_AEK25512_1_2010_07_14_Netherlands_Cat_Alphacoronavirus_1
2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_1
FCoVWSU791146_P1_ORF3a_AGZ84517_1_2011_USA_Cat_Alphacoronavirus_1
SHXB_NA_AKA60055_1_2013_03_07_China_Swine_Alphacoronavirus_1
WSU_79_1683_NA_AFH58020_1_NA_NA_Unknown_Alphacoronavirus_1
Felis_catus_NLD_UU88_2010_NS3a_AGT52081_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1
Cat3_day28_withoutdeletion_NA_AMD11231_1_2013_Belgium_Cat_Alphacoronavirus_1
attenuated_Purdue_P115_NA_ABG89322_1_NA_NA_Swine_Alphacoronavirus_1
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_1
TGEV_USA_Illinois146_2008_NSP3a_ASV64368_1_2008_04_09_USA_Unknown_Alphacoronavirus_1
TGEV_USA_Illinois149_2013_NSP3a_ASV64394_1_2013_02_28_USA_Unknown_Alphacoronavirus_1
FCoVWSU791146_P50_ORF3a_AGZ84537_1_2011_USA_Cat_Alphacoronavirus_1
TGEV_USA_NorthCarolina142_2007_NSP3a_ASV64332_1_2007_02_16_USA_Unknown_Alphacoronavirus_1
HLJ_072_NA_ASB15749_1_2016_07_01_China_Dog_Alphacoronavirus_1
OH7269_ORF3a_AKV62756_1_2014_07_24_USA_Swine_Alphacoronavirus_1
TGEV_USA_Illinois139_2006_NSP3a_ASV64305_1_2006_11_17_USA_Unknown_Alphacoronavirus_1
1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_1
HLJ_DQ_2016_01_NA_ASB16888_1_2016_10_China_Cat_Alphacoronavirus_1
UU10_NA_ACT10938_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1
26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
UG_FH8_NA_ASU62489_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1
;
end;
begin trees;
translate
1 TGEV_USA_HB_1988_NSP3a_ASV64287_1_1988_USA_Unknown_Alphacoronavirus_1,
2 TGEV_USA_Tennessee144_2008_NSP3a_ASV64350_1_2008_04_15_USA_Unknown_Alphacoronavirus_1,
3 TGEV_USA_SouthDakota154_2014_NSP3a_ASV64439_1_2014_02_05_USA_Unknown_Alphacoronavirus_1,
4 67F_ORF_3a_AJO27004_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
5 A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1,
6 TGEV_USA_Wisconsin151_2014_NSP3a_ASV64412_1_2014_01_17_USA_Unknown_Alphacoronavirus_1,
7 TN_449_NA_AFG19739_1_NA_NA_Dog_Alphacoronavirus_1,
8 TGEV_USA_Z_1986_NSP3a_ASV64278_1_2006_12_08_USA_Unknown_Alphacoronavirus_1,
9 Cat1_day28_deletion_NA_AMD11187_1_2013_Belgium_Cat_Alphacoronavirus_1,
10 UU15_NA_ACT10917_1_2007_07_13_Netherlands_Cat_Alphacoronavirus_1,
11 Cat2_day21_deletion_NA_AMD11154_1_2013_Belgium_Cat_Alphacoronavirus_1,
12 TGEV_USA_Minnesota148_2013_NSP3a_ASV64385_1_2013_01_04_USA_Unknown_Alphacoronavirus_1,
13 Cat1_day28_withoutdeletion_NA_AMD11198_1_2013_Belgium_Cat_Alphacoronavirus_1,
14 Cat2_day21_withoutdeletion_NA_AMD11165_1_2013_Belgium_Cat_Alphacoronavirus_1,
15 UU16_NA_ACT10928_1_2007_06_07_Netherlands_Cat_Alphacoronavirus_1,
16 UU18_NA_ADL71456_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1,
17 Cat3_day9_NA_AMD11176_1_2013_Belgium_Cat_Alphacoronavirus_1,
18 Cat3_day28_deletion_NA_AMD11220_1_2013_Belgium_Cat_Alphacoronavirus_1,
19 Cat_1_Karlslunde_NA_ASU62500_1_2015_02_01_Denmark_Cat_Alphacoronavirus_1,
20 UU22_NA_ADC35462_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1,
21 UU21_NA_ADL71467_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1,
22 FCoVWSU791146_P8_ORF3a_AGZ84527_1_2011_USA_Cat_Alphacoronavirus_1,
23 TGEV_USA_Minnesota141_2007_NSP3a_ASV64323_1_2007_02_08_USA_Unknown_Alphacoronavirus_1,
24 DF_2_R3i_ORF3a_AFH55112_1_NA_NA_Cat_Alphacoronavirus_1,
25 UU30_NA_ADO39851_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1,
26 UU3_NA_ACT10960_1_1998_03_10_USA_Cat_Alphacoronavirus_1,
27 UU23_NA_ADC35473_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1,
28 HLJ_071_NA_ASB15739_1_2016_07_01_China_Dog_Alphacoronavirus_1,
29 FCoV_NTU156_P_2007_NA_ACS44219_1_2007_09_Taiwan_Cat_Alphacoronavirus_1,
30 UU54_NA_AEK25522_1_2010_03_12_Netherlands_Cat_Alphacoronavirus_1,
31 UU5_NA_ACT10907_1_2007_03_07_Netherlands_Cat_Alphacoronavirus_1,
32 HLJ_HRB_2016_10_NA_AUG98120_1_2016_11_China_Cat_Alphacoronavirus_1,
33 HLJ_HRB_2016_13_NA_AUG98142_1_2016_11_China_Cat_Alphacoronavirus_1,
34 2020_7_ORF3a_QQA04987_1_2020_United_Kingdom_Dog_Alphacoronavirus_1,
35 UU7_NA_ACT10877_1_2007_04_25_Netherlands_Cat_Alphacoronavirus_1,
36 WH_1_nsp3a_ADY39741_1_NA_China_Swine_Alphacoronavirus_1,
37 UU8_NA_ACT10897_1_2007_05_24_Netherlands_Cat_Alphacoronavirus_1,
38 PRCV_USA_Minnesota_46140_2016_ORF3a_ASV45149_1_2016_11_01_USA_Unknown_Alphacoronavirus_1,
39 JS2012_ORF3a_AMB66489_1_2012_China_Swine_Alphacoronavirus_1,
40 partially_attenuated_Miller_M60_NA_ABG89302_1_1987_USA_Swine_Alphacoronavirus_1,
41 inoculum_NA_AMD11131_1_2013_Belgium_Cat_Alphacoronavirus_1,
42 SC_Y_nsp3a_ABD97836_1_NA_China_Unknown_Alphacoronavirus_1,
43 S378_NS3a_AFX81109_1_1978_USA_Dog_Alphacoronavirus_1,
44 virulent_Purdue_NA_ABG89331_1_1952_USA_Swine_Alphacoronavirus_1,
45 TGEV_USA_Minnesota152_2014_NSP3a_ASV64421_1_2014_01_31_USA_Unknown_Alphacoronavirus_1,
46 TGEV_HX_NA_AGM75127_1_2012_05_05_China_Swine_Alphacoronavirus_1,
47 171_NS3a_AFX81092_1_1971_Germany_Dog_Alphacoronavirus_1,
48 TGEV_AHHF_NA_AQT01350_1_2015_12_22_China_Swine_Alphacoronavirus_1,
49 TGEV_Mex_145_2008_NSP3a_ASV64359_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1,
50 65F_ORF_3a_AJO26994_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
51 TGEV_USA_Iowa143_2008_NSP3a_ASV64341_1_2008_03_06_USA_Unknown_Alphacoronavirus_1,
52 TGEV_USA_Minnesota153_2014_NSP3a_ASV64430_1_2014_02_04_USA_Unknown_Alphacoronavirus_1,
53 UU17_NA_ADL71447_1_2007_07_17_Netherlands_Cat_Alphacoronavirus_1,
54 XXN_NA_QDM36988_1_2018_04_China_Cat_Alphacoronavirus_1,
55 HLJ_HRB_2016_11_NA_AUG98131_1_2016_11_China_Cat_Alphacoronavirus_1,
56 TGEV_USA_Minnesota150_2013_NSP3a_ASV64403_1_2013_03_01_USA_Unknown_Alphacoronavirus_1,
57 CCoV_NTU336_F_2008_ORF3a_ADB28908_1_2008_11_Taiwan_Dog_Alphacoronavirus_1,
58 27C_ORF_3a_AJO26974_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
59 CB_05_ORF3a_AKA65830_1_2005_Italy_Dog_Alphacoronavirus_1,
60 TS_nsp3a_ABC72415_1_NA_NA_Swine_Alphacoronavirus_1,
61 UU40_NA_ADO39818_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1,
62 TGEV_USA_NorthCarolina140_2007_NSP3a_ASV64314_1_2007_02_08_USA_Unknown_Alphacoronavirus_1,
63 UU20_NA_ADO39840_1_2007_08_23_Netherlands_Cat_Alphacoronavirus_1,
64 UNKNOWN_HQ012372_NA_ADL71498_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1,
65 UU11_NA_ACT10866_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1,
66 UU24_NA_ADL71477_1_2008_01_03_Netherlands_Cat_Alphacoronavirus_1,
67 28O_ORF_3a_AJO26984_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
68 RM_NA_ACT10855_1_2002_01_28_USA_Cat_Alphacoronavirus_1,
69 TGEV_USA_Minnesota138_2006_NSP3a_ASV64296_1_2006_11_08_USA_Unknown_Alphacoronavirus_1,
70 UU47_NA_AEK25512_1_2010_07_14_Netherlands_Cat_Alphacoronavirus_1,
71 2020_15_ORF3a_QQA04976_1_2020_United_Kingdom_Dog_Alphacoronavirus_1,
72 FCoVWSU791146_P1_ORF3a_AGZ84517_1_2011_USA_Cat_Alphacoronavirus_1,
73 SHXB_NA_AKA60055_1_2013_03_07_China_Swine_Alphacoronavirus_1,
74 WSU_79_1683_NA_AFH58020_1_NA_NA_Unknown_Alphacoronavirus_1,
75 Felis_catus_NLD_UU88_2010_NS3a_AGT52081_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1,
76 Cat3_day28_withoutdeletion_NA_AMD11231_1_2013_Belgium_Cat_Alphacoronavirus_1,
77 attenuated_Purdue_P115_NA_ABG89322_1_NA_NA_Swine_Alphacoronavirus_1,
78 23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_1,
79 TGEV_USA_Illinois146_2008_NSP3a_ASV64368_1_2008_04_09_USA_Unknown_Alphacoronavirus_1,
80 TGEV_USA_Illinois149_2013_NSP3a_ASV64394_1_2013_02_28_USA_Unknown_Alphacoronavirus_1,
81 FCoVWSU791146_P50_ORF3a_AGZ84537_1_2011_USA_Cat_Alphacoronavirus_1,
82 TGEV_USA_NorthCarolina142_2007_NSP3a_ASV64332_1_2007_02_16_USA_Unknown_Alphacoronavirus_1,
83 HLJ_072_NA_ASB15749_1_2016_07_01_China_Dog_Alphacoronavirus_1,
84 OH7269_ORF3a_AKV62756_1_2014_07_24_USA_Swine_Alphacoronavirus_1,
85 TGEV_USA_Illinois139_2006_NSP3a_ASV64305_1_2006_11_17_USA_Unknown_Alphacoronavirus_1,
86 1_71_NA_AFG19734_1_NA_NA_Dog_Alphacoronavirus_1,
87 HLJ_DQ_2016_01_NA_ASB16888_1_2016_10_China_Cat_Alphacoronavirus_1,
88 UU10_NA_ACT10938_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1,
89 26M_ORF_3a_AJO27024_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
90 UG_FH8_NA_ASU62489_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:2.552979e-03,8:9.805613e-03,36:2.395638e-03,42:2.599823e-03,46:2.474542e-03,48:2.304020e-03,49:5.731830e-03,73:2.465456e-03,77:2.390222e-03,((((2:5.838502e-03,(3:3.260534e-03,(12:2.275314e-03,56:2.524114e-03,80:2.514019e-03)0.743:5.921813e-03)0.653:6.450890e-03,(6:2.418984e-03,45:2.640160e-03,52:2.504960e-03)1.000:1.324345e-02,23:3.065200e-03,38:2.357276e-02,51:2.369802e-03,62:6.164683e-03,69:2.743717e-03,79:5.951313e-03,82:2.379789e-03,(84:3.383628e-02,85:1.161530e-01)1.000:9.443203e-02)1.000:3.220028e-02,39:2.562592e-03,40:6.231068e-03,60:9.620402e-03)1.000:6.553365e-02,(((((((4:2.410060e-03,50:2.672541e-03,58:2.702441e-03,67:2.753983e-03,89:2.483370e-03)1.000:3.000395e-02,(9:2.602164e-03,11:2.405219e-03,13:2.534683e-03,14:2.519261e-03,17:2.529789e-03,18:2.555222e-03,26:2.351976e-03,41:2.513583e-03,76:2.623835e-03)1.000:2.470610e-02,(((10:6.191673e-03,16:1.004296e-02)1.000:2.073184e-02,35:2.441037e-02)0.528:9.650118e-03,(20:2.552345e-03,21:2.459445e-03,27:2.637988e-03,64:2.650522e-03)0.988:1.003735e-02)0.507:8.368995e-03,15:1.887354e-02,(19:2.134472e-02,70:2.532291e-02)0.979:1.713832e-02,((25:8.618047e-03,61:3.427095e-03)0.987:2.089095e-02,63:4.301522e-02)0.702:1.633338e-02,30:1.795686e-02,31:1.369070e-02,(32:2.314678e-03,33:2.567473e-03)1.000:2.700455e-02,(37:2.783994e-03,(65:2.567141e-03,88:2.589458e-03)0.982:5.940060e-03)0.988:1.559242e-02,53:2.740043e-02,54:3.329579e-02,55:1.710962e-02,66:2.651699e-02,68:4.335603e-02,75:3.127149e-02,87:2.578851e-02,90:1.647451e-02)1.000:2.116068e-01,(24:5.887161e-03,78:6.376447e-03)0.996:3.454118e-02)0.973:2.726463e-02,(43:6.302315e-03,86:2.534990e-03)0.949:1.233209e-02)0.953:1.809724e-02,(34:1.298049e-02,71:2.602318e-03)0.844:5.603256e-03,57:1.412167e-02,59:9.802211e-03)0.904:9.370622e-03,29:1.000897e-02)0.854:8.746782e-03,5:1.762008e-02,(7:2.274977e-03,28:2.214991e-03,83:2.396531e-03)1.000:1.744021e-02,(22:5.386351e-03,47:2.482644e-03,72:2.660812e-03,81:2.301440e-03)1.000:2.259559e-02,74:1.110696e-02)1.000:2.360812e-02)0.750:7.721492e-03,44:2.692797e-03)0.808:6.063078e-03);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:2.552979e-03,8:9.805613e-03,36:2.395638e-03,42:2.599823e-03,46:2.474542e-03,48:2.304020e-03,49:5.731830e-03,73:2.465456e-03,77:2.390222e-03,((((2:5.838502e-03,(3:3.260534e-03,(12:2.275314e-03,56:2.524114e-03,80:2.514019e-03):5.921813e-03):6.450890e-03,(6:2.418984e-03,45:2.640160e-03,52:2.504960e-03):1.324345e-02,23:3.065200e-03,38:2.357276e-02,51:2.369802e-03,62:6.164683e-03,69:2.743717e-03,79:5.951313e-03,82:2.379789e-03,(84:3.383628e-02,85:1.161530e-01):9.443203e-02):3.220028e-02,39:2.562592e-03,40:6.231068e-03,60:9.620402e-03):6.553365e-02,(((((((4:2.410060e-03,50:2.672541e-03,58:2.702441e-03,67:2.753983e-03,89:2.483370e-03):3.000395e-02,(9:2.602164e-03,11:2.405219e-03,13:2.534683e-03,14:2.519261e-03,17:2.529789e-03,18:2.555222e-03,26:2.351976e-03,41:2.513583e-03,76:2.623835e-03):2.470610e-02,(((10:6.191673e-03,16:1.004296e-02):2.073184e-02,35:2.441037e-02):9.650118e-03,(20:2.552345e-03,21:2.459445e-03,27:2.637988e-03,64:2.650522e-03):1.003735e-02):8.368995e-03,15:1.887354e-02,(19:2.134472e-02,70:2.532291e-02):1.713832e-02,((25:8.618047e-03,61:3.427095e-03):2.089095e-02,63:4.301522e-02):1.633338e-02,30:1.795686e-02,31:1.369070e-02,(32:2.314678e-03,33:2.567473e-03):2.700455e-02,(37:2.783994e-03,(65:2.567141e-03,88:2.589458e-03):5.940060e-03):1.559242e-02,53:2.740043e-02,54:3.329579e-02,55:1.710962e-02,66:2.651699e-02,68:4.335603e-02,75:3.127149e-02,87:2.578851e-02,90:1.647451e-02):2.116068e-01,(24:5.887161e-03,78:6.376447e-03):3.454118e-02):2.726463e-02,(43:6.302315e-03,86:2.534990e-03):1.233209e-02):1.809724e-02,(34:1.298049e-02,71:2.602318e-03):5.603256e-03,57:1.412167e-02,59:9.802211e-03):9.370622e-03,29:1.000897e-02):8.746782e-03,5:1.762008e-02,(7:2.274977e-03,28:2.214991e-03,83:2.396531e-03):1.744021e-02,(22:5.386351e-03,47:2.482644e-03,72:2.660812e-03,81:2.301440e-03):2.259559e-02,74:1.110696e-02):2.360812e-02):7.721492e-03,44:2.692797e-03):6.063078e-03);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1338.58 -1370.58
2 -1341.67 -1373.90
--------------------------------------
TOTAL -1339.23 -1373.24
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.430260 0.030464 1.100222 1.769659 1.413697 1253.24 1317.29 1.000
r(A<->C){all} 0.082298 0.000688 0.035784 0.134966 0.079780 686.69 758.54 1.001
r(A<->G){all} 0.212450 0.001436 0.141421 0.286823 0.211054 650.74 707.80 1.000
r(A<->T){all} 0.082534 0.000382 0.047007 0.122275 0.081177 863.56 943.95 1.000
r(C<->G){all} 0.091271 0.000918 0.037808 0.153379 0.088679 700.57 712.37 1.001
r(C<->T){all} 0.448371 0.002319 0.357866 0.542564 0.447596 690.24 720.56 1.003
r(G<->T){all} 0.083077 0.000472 0.042816 0.124467 0.081067 785.73 802.57 1.000
pi(A){all} 0.274098 0.000628 0.228468 0.327184 0.274082 1037.70 1070.54 1.002
pi(C){all} 0.172945 0.000408 0.134305 0.213147 0.171826 903.76 932.21 1.000
pi(G){all} 0.210634 0.000509 0.167689 0.255441 0.209955 856.09 926.37 1.000
pi(T){all} 0.342324 0.000670 0.292673 0.394032 0.341782 879.98 990.72 1.001
alpha{1,2} 0.840545 0.176789 0.364134 1.610549 0.736521 1072.92 1090.66 1.000
alpha{3} 1.947673 0.651975 0.789721 3.606293 1.767701 1423.45 1431.74 1.000
pinvar{all} 0.085627 0.004293 0.000025 0.214208 0.072480 1078.53 1111.34 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
[2J[H /HYPHY 2.3.14.20190214beta(MP) for Linux on x86_64\ ***************** TYPES OF STANDARD ANALYSES ***************** (1) Selection Analyses (2) Evolutionary Hypothesis Testing (3) Relative evolutionary rate inference (4) Coevolutionary analysis (5) Basic Analyses (6) Codon Selection Analyses (7) Compartmentalization (8) Data File Tools (9) Miscellaneous (10) Model Comparison (11) Kernel Analysis Tools (12) Molecular Clock (13) Phylogeny Reconstruction (14) Positive Selection (15) Recombination (16) Selection/Recombination (17) Relative Rate (18) Relative Ratio (19) Substitution Rates Please select type of analyses you want to list (or press ENTER to process custom batch file):[2J[H***************** FILES IN 'Selection Analyses' ***************** (1) [MEME] Test for episodic site-level selection using MEME (Mixed Effects Model of Evolution). (2) [FEL] Test for pervasive site-level selection using FEL (Fixed Effects Likelihood). (3) [SLAC] Test for pervasive site-level selection using SLAC (Single Likelihood Ancestor Counting). (4) [FUBAR] Test for pervasive site-level selection using FUBAR (Fast Unconstrained Bayesian AppRoximation for inferring selection). (5) [BUSTED] Test for episodic gene-wide selection using BUSTED (Branch-site Unrestricted Statistical Test of Episodic Diversification). (6) [aBSREL] Test for lineage-specific evolution using the branch-site method aBS-REL (Adaptive Branch-Site Random Effects Likelihood). (7) [RELAX] Test for relaxation of selection pressure along a specified set of test branches using RELAX (a random effects test of selection relaxation). Please select the analysis you would like to perform (or press ENTER to return to the list of analysis types): Analysis Description -------------------- Perform a Fast Unbiased AppRoximate Bayesian (FUBAR) analysis of a coding sequence alignment to determine whether some sites have been subject to pervasive purifying or diversifying selection. v2.1 introduces two more methods for estimating the posterior distribution of grid weights: collapsed Gibbs MCMC (faster) and 0-th order Variation Bayes approximation (fastest). Please note that a FUBAR analysis generates a cache and a results JSON file in the same directory as directory as the original alignment. HyPhy needs to have write privileges to this directory. For example if the original file is in /home/sergei/FUBAR/data/pol.nex then at the end of a FUBAR run, there will also exist FUBAR-generated files /home/sergei/FUBAR/data/pol.nex.FUBAR.json, /home/sergei/FUBAR/data/pol.nex.fubrar.cache. They also provide checkpointing so that a partially completed analysis can be restarted. - __Requirements__: in-frame codon alignment (possibly partitioned) and a phylogenetic tree (one per partition) - __Citation__: FUBAR: a fast, unconstrained bayesian approximation for inferring selection (2013), Mol Biol Evol. 30(5):1196-205 - __Written by__: Sergei L Kosakovsky Pond - __Contact Information__: spond@temple.edu - __Analysis Version__: 2.1 ####Choose Genetic Code 1. [**Universal**] Universal code. (Genebank transl_table=1). 2. [**Vertebrate mtDNA**] Vertebrate mitochondrial DNA code. (Genebank transl_table=2). 3. [**Yeast mtDNA**] Yeast mitochondrial DNA code. (Genebank transl_table=3). 4. [**Mold/Protozoan mtDNA**] Mold, Protozoan and Coelenterate mitochondrial DNA and the Mycloplasma/Spiroplasma code. (Genebank transl_table=4). 5. [**Invertebrate mtDNA**] Invertebrate mitochondrial DNA code. (Genebank transl_table=5). 6. [**Ciliate Nuclear**] Ciliate, Dasycladacean and Hexamita Nuclear code. (Genebank transl_table=6). 7. [**Echinoderm mtDNA**] Echinoderm mitochondrial DNA code. (Genebank transl_table=9). 8. [**Euplotid Nuclear**] Euplotid Nuclear code. (Genebank transl_table=10). 9. [**Alt. Yeast Nuclear**] Alternative Yeast Nuclear code. (Genebank transl_table=12). 10. [**Ascidian mtDNA**] Ascidian mitochondrial DNA code. (Genebank transl_table=13). 11. [**Flatworm mtDNA**] Flatworm mitochondrial DNA code. (Genebank transl_table=14). 12. [**Blepharisma Nuclear**] Blepharisma Nuclear code. (Genebank transl_table=15). 13. [**Chlorophycean mtDNA**] Chlorophycean Mitochondrial Code (transl_table=16). 14. [**Trematode mtDNA**] Trematode Mitochondrial Code (transl_table=21). 15. [**Scenedesmus obliquus mtDNA**] Scenedesmus obliquus mitochondrial Code (transl_table=22). 16. [**Thraustochytrium mtDNA**] Thraustochytrium Mitochondrial Code (transl_table=23). 17. [**Pterobranchia mtDNA**] Pterobranchia Mitochondrial Code (transl_table=24). 18. [**SR1 and Gracilibacteria**] Candidate Division SR1 and Gracilibacteria Code (transl_table=25). 19. [**Pachysolen Nuclear**] Pachysolen tannophilus Nuclear Code (transl_table=26). >Please choose an option (or press q to cancel selection): >Select a coding sequence alignment file (`/usr/local/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/`) >A tree was found in the data file: `(C52,C68,C96,C47,C50,C49,C51,C48,C100,((((C67,(C66,(C59,C61,C55)),(C69,C60,C62),C58,C43,C56,C63,C57,C54,C65,(C41,C53)),C40,C102,C72),(((((((C11,C9,C6,C7,C8),(C16,C19,C18,C20,C24,C22,C87,C101,C23),(((C75,C78),C95),(C84,C83,C85,C73)),C77,(C25,C91),((C86,C90),C82),C93,C92,(C37,C39),(C94,(C76,C74)),C79,C98,C38,C88,C46,C32,C36,C71),(C27,C5)),(C45,C4)),(C3,C2),C15,C14),C31),C13,(C70,C34,C35),(C29,C1,C28,C30),C97)),C104))` >Would you like to use it (y/n)? >Loaded a multiple sequence alignment with **90** sequences, **85** codons, and **1** partitions from `/data//pss_subsets/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1.fna` > FUBAR will write cache and result files to _/data//pss_subsets/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1.fna.FUBAR.cache_ and _/data//pss_subsets/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1.fna.FUBAR.json_, respectively > Number of grid points per dimension (total number is D^2) (permissible range = [5,50], default value = 20, integer): ####Posterior estimation method 1. [**Metropolis-Hastings**] Full Metropolis-Hastings MCMC algorithm (slowest, original 2013 paper implementation) 2. [**Collapsed Gibbs**] Collapsed Gibbs sampler (intermediate speed) 3. [**Variational Bayes**] 0-th order Variational Bayes approximations (fastest, recommended default) >Please choose an option (or press q to cancel selection):> The concentration parameter of the Dirichlet prior (permissible range = [0.001,1], default value = 0.5): ### Obtaining branch lengths and nucleotide substitution biases under the nucleotide GTR model * Log(L) = -2286.80, AIC-c = 4833.07 (129 estimated parameters) * Tree length (expected substitutions/site) for partition 1 : 2.180 ### Computing the phylogenetic likelihood function on the grid * Determining appropriate tree scaling based on the best score from a 20 x 20 rate grid * Best scaling achieved for * synonymous rate = 2.815 * non-synonymous rate = 0.571 * Computing conditional site likelihoods on a 20 x 20 rate grid ### Running an iterative zeroth order variational Bayes procedure to estimate the posterior mean of rate weights * Using the following settings * Dirichlet alpha : 0.5 ### Tabulating site-level results | Codon | Partition | alpha | beta |Posterior prob for positive selection| |:--------------:|:--------------:|:--------------:|:--------------:|:-----------------------------------:| | 79 | 1 | 0.642 | 2.187 | Pos. posterior = 0.9315 | | 81 | 1 | 0.827 | 2.677 | Pos. posterior = 0.9263 | ---- ## FUBAR inferred 2 sites subject to diversifying positive selection at posterior probability >= 0.9 Of these, 0.14 are expected to be false positives (95% confidence interval of 0-1 )
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
