--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -3912.93 -3943.66
2 -3912.49 -3940.39
--------------------------------------
TOTAL -3912.68 -3943.01
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.345104 0.011613 1.145441 1.564780 1.338044 932.30 1121.70 1.000
r(A<->C){all} 0.099136 0.000342 0.064149 0.135875 0.098077 694.89 847.81 1.000
r(A<->G){all} 0.266771 0.000812 0.214946 0.324433 0.266261 542.94 625.13 1.000
r(A<->T){all} 0.098559 0.000197 0.072518 0.126834 0.097827 784.19 802.34 1.000
r(C<->G){all} 0.065230 0.000298 0.034851 0.101220 0.063768 692.86 755.69 1.000
r(C<->T){all} 0.412590 0.001024 0.350835 0.477594 0.412553 683.28 702.99 1.000
r(G<->T){all} 0.057714 0.000146 0.034008 0.081254 0.057307 885.36 903.57 1.000
pi(A){all} 0.281318 0.000197 0.254128 0.307721 0.281212 873.84 888.85 1.000
pi(C){all} 0.181027 0.000135 0.159743 0.205800 0.180691 759.56 809.47 1.000
pi(G){all} 0.213200 0.000169 0.186706 0.236844 0.213186 835.31 988.44 1.000
pi(T){all} 0.324455 0.000203 0.297187 0.351850 0.323977 959.16 978.77 1.000
alpha{1,2} 0.228248 0.001116 0.166583 0.292692 0.224771 1081.73 1196.46 1.000
alpha{3} 2.187992 0.521467 0.987191 3.555824 2.071921 1262.85 1381.93 1.000
pinvar{all} 0.301408 0.002730 0.196323 0.397292 0.304387 991.01 1051.83 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
-- Starting log on Wed Nov 09 22:46:28 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Wed Nov 09 22:47:33 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Wed Nov 09 22:46:28 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Thu Nov 10 05:40:33 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result/gapped_alignment/fubar,A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 90 taxa and 897 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C52
Taxon 2 -> C67
Taxon 3 -> C66
Taxon 4 -> C11
Taxon 5 -> C68
Taxon 6 -> C14
Taxon 7 -> C70
Taxon 8 -> C13
Taxon 9 -> C16
Taxon 10 -> C75
Taxon 11 -> C19
Taxon 12 -> C59
Taxon 13 -> C18
Taxon 14 -> C20
Taxon 15 -> C77
Taxon 16 -> C78
Taxon 17 -> C76
Taxon 18 -> C25
Taxon 19 -> C22
Taxon 20 -> C84
Taxon 21 -> C83
Taxon 22 -> C28
Taxon 23 -> C58
Taxon 24 -> C30
Taxon 25 -> C86
Taxon 26 -> C87
Taxon 27 -> C85
Taxon 28 -> C33
Taxon 29 -> C35
Taxon 30 -> C93
Taxon 31 -> C92
Taxon 32 -> C37
Taxon 33 -> C94
Taxon 34 -> C3
Taxon 35 -> C40
Taxon 36 -> C96
Taxon 37 -> C39
Taxon 38 -> C42
Taxon 39 -> C44
Taxon 40 -> C102
Taxon 41 -> C101
Taxon 42 -> C46
Taxon 43 -> C48
Taxon 44 -> C104
Taxon 45 -> C60
Taxon 46 -> C105
Taxon 47 -> C103
Taxon 48 -> C1
Taxon 49 -> C49
Taxon 50 -> C4
Taxon 51 -> C106
Taxon 52 -> C6
Taxon 53 -> C56
Taxon 54 -> C21
Taxon 55 -> C12
Taxon 56 -> C61
Taxon 57 -> C36
Taxon 58 -> C10
Taxon 59 -> C99
Taxon 60 -> C69
Taxon 61 -> C23
Taxon 62 -> C82
Taxon 63 -> C57
Taxon 64 -> C72
Taxon 65 -> C55
Taxon 66 -> C38
Taxon 67 -> C7
Taxon 68 -> C81
Taxon 69 -> C91
Taxon 70 -> C17
Taxon 71 -> C98
Taxon 72 -> C90
Taxon 73 -> C27
Taxon 74 -> C100
Taxon 75 -> C32
Taxon 76 -> C88
Taxon 77 -> C2
Taxon 78 -> C5
Taxon 79 -> C43
Taxon 80 -> C63
Taxon 81 -> C54
Taxon 82 -> C34
Taxon 83 -> C89
Taxon 84 -> C26
Taxon 85 -> C47
Taxon 86 -> C80
Taxon 87 -> C97
Taxon 88 -> C9
Taxon 89 -> C8
Taxon 90 -> C74
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1668058835
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 1473981780
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 8647327730
Seed = 1044689379
Swapseed = 1668058835
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 98 unique site patterns
Division 2 has 66 unique site patterns
Division 3 has 202 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -25356.812440 -- 149.597508
Chain 2 -- -26106.392036 -- 149.597508
Chain 3 -- -27979.615700 -- 149.597508
Chain 4 -- -26689.017836 -- 149.597508
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -27339.206934 -- 149.597508
Chain 2 -- -26918.562938 -- 149.597508
Chain 3 -- -26294.076172 -- 149.597508
Chain 4 -- -28233.268516 -- 149.597508
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-25356.812] (-26106.392) (-27979.616) (-26689.018) * [-27339.207] (-26918.563) (-26294.076) (-28233.269)
1000 -- (-13321.688) [-12767.279] (-12904.789) (-13067.322) * [-12427.738] (-13457.531) (-13795.462) (-13855.230) -- 1:56:33
2000 -- (-9619.296) (-9668.049) [-9013.202] (-9808.428) * (-9535.704) [-8804.059] (-10029.387) (-10093.131) -- 1:48:07
3000 -- (-8571.857) (-8470.820) [-8040.984] (-8278.561) * (-8134.490) [-8103.090] (-8388.376) (-8276.484) -- 1:39:42
4000 -- (-7900.548) (-7958.086) [-7744.324] (-7998.091) * (-7777.923) [-7722.931] (-7838.476) (-7933.450) -- 1:35:27
5000 -- (-7729.352) (-7542.852) (-7468.063) [-7487.873] * (-7507.870) (-7475.798) [-7464.706] (-7753.972) -- 1:32:52
Average standard deviation of split frequencies: 0.106910
6000 -- (-7421.274) (-7416.252) [-7343.340] (-7377.014) * (-7461.670) [-7343.822] (-7369.783) (-7497.360) -- 1:31:07
7000 -- (-7313.116) (-7336.291) (-7308.953) [-7281.964] * (-7365.729) (-7282.478) [-7277.748] (-7348.186) -- 1:29:50
8000 -- [-7231.335] (-7293.559) (-7252.711) (-7283.770) * (-7314.128) (-7268.075) [-7257.619] (-7277.031) -- 1:26:48
9000 -- (-7221.745) [-7254.607] (-7227.208) (-7263.941) * (-7239.613) (-7244.586) [-7216.699] (-7237.166) -- 1:26:15
10000 -- [-7181.590] (-7236.800) (-7231.459) (-7217.287) * (-7211.211) (-7239.567) [-7220.622] (-7212.528) -- 1:25:48
Average standard deviation of split frequencies: 0.108406
11000 -- [-7173.652] (-7203.841) (-7205.787) (-7198.259) * [-7190.727] (-7263.538) (-7208.207) (-7199.020) -- 1:25:24
12000 -- [-7175.936] (-7214.435) (-7214.569) (-7209.358) * [-7194.750] (-7263.118) (-7197.246) (-7189.835) -- 1:25:04
13000 -- (-7176.691) [-7179.627] (-7235.467) (-7223.434) * [-7199.399] (-7236.555) (-7191.966) (-7195.901) -- 1:24:46
14000 -- (-7192.647) [-7173.518] (-7231.958) (-7203.253) * (-7222.970) (-7222.409) (-7191.485) [-7188.927] -- 1:24:30
15000 -- [-7156.213] (-7188.830) (-7260.642) (-7211.373) * [-7212.268] (-7221.558) (-7205.175) (-7168.242) -- 1:23:10
Average standard deviation of split frequencies: 0.091749
16000 -- (-7165.826) [-7160.440] (-7256.121) (-7193.070) * (-7205.912) [-7184.715] (-7211.503) (-7168.308) -- 1:23:01
17000 -- (-7164.195) [-7157.751] (-7231.076) (-7191.974) * [-7172.455] (-7206.262) (-7171.438) (-7207.762) -- 1:22:52
18000 -- (-7191.511) [-7183.304] (-7243.305) (-7193.566) * [-7186.748] (-7194.648) (-7181.351) (-7208.524) -- 1:22:44
19000 -- [-7176.272] (-7203.260) (-7216.077) (-7211.046) * (-7182.520) (-7215.798) [-7170.811] (-7211.787) -- 1:22:36
20000 -- (-7200.674) (-7223.260) (-7216.053) [-7187.076] * (-7184.426) (-7214.086) [-7179.765] (-7203.474) -- 1:22:29
Average standard deviation of split frequencies: 0.082181
21000 -- (-7188.526) (-7217.146) (-7209.890) [-7191.864] * [-7162.440] (-7175.948) (-7198.579) (-7209.467) -- 1:22:21
22000 -- (-7199.060) (-7192.449) (-7210.556) [-7191.293] * (-7175.615) (-7177.662) [-7180.489] (-7209.320) -- 1:22:14
23000 -- (-7190.343) (-7209.633) (-7219.186) [-7166.738] * (-7202.405) (-7197.145) [-7183.864] (-7209.555) -- 1:22:07
24000 -- (-7195.248) (-7169.152) (-7217.587) [-7166.959] * (-7206.029) [-7197.063] (-7194.556) (-7235.275) -- 1:22:00
25000 -- (-7203.396) [-7159.797] (-7214.236) (-7181.558) * (-7218.352) [-7167.931] (-7189.571) (-7204.872) -- 1:21:15
Average standard deviation of split frequencies: 0.064101
26000 -- (-7207.086) [-7178.940] (-7200.208) (-7197.228) * (-7236.294) [-7169.514] (-7212.197) (-7199.747) -- 1:21:10
27000 -- (-7218.835) [-7163.736] (-7244.751) (-7174.865) * (-7219.796) [-7165.765] (-7179.052) (-7204.551) -- 1:21:05
28000 -- (-7215.392) [-7166.738] (-7229.602) (-7183.798) * (-7216.778) [-7166.793] (-7199.317) (-7219.248) -- 1:21:00
29000 -- (-7210.771) [-7166.379] (-7216.213) (-7177.667) * (-7217.028) (-7187.444) [-7186.713] (-7208.061) -- 1:20:55
30000 -- (-7191.189) [-7160.899] (-7204.476) (-7197.019) * (-7211.434) [-7176.046] (-7191.708) (-7225.649) -- 1:20:50
Average standard deviation of split frequencies: 0.061421
31000 -- (-7174.116) (-7178.322) [-7173.752] (-7206.902) * (-7193.659) [-7172.747] (-7196.828) (-7245.161) -- 1:20:45
32000 -- (-7188.152) [-7179.891] (-7202.644) (-7205.025) * (-7211.197) [-7172.614] (-7198.010) (-7214.666) -- 1:20:40
33000 -- [-7183.041] (-7178.009) (-7194.235) (-7189.254) * (-7224.321) [-7162.384] (-7198.947) (-7217.863) -- 1:20:05
34000 -- (-7207.966) (-7183.324) (-7190.393) [-7177.662] * (-7226.939) [-7166.619] (-7202.499) (-7175.285) -- 1:20:01
35000 -- (-7186.268) (-7175.354) (-7194.190) [-7182.889] * (-7212.872) [-7164.173] (-7196.095) (-7170.373) -- 1:19:57
Average standard deviation of split frequencies: 0.055021
36000 -- (-7176.607) [-7177.373] (-7193.595) (-7203.507) * (-7192.358) [-7156.756] (-7214.055) (-7176.147) -- 1:19:53
37000 -- [-7176.279] (-7199.741) (-7194.421) (-7215.228) * (-7200.160) [-7156.486] (-7233.046) (-7193.798) -- 1:19:48
38000 -- [-7173.960] (-7177.630) (-7230.804) (-7197.088) * (-7185.694) [-7162.250] (-7211.430) (-7205.704) -- 1:19:44
39000 -- (-7189.056) [-7170.922] (-7227.108) (-7180.351) * [-7167.852] (-7195.721) (-7254.096) (-7214.513) -- 1:19:40
40000 -- [-7153.475] (-7204.778) (-7219.816) (-7186.640) * [-7157.232] (-7204.583) (-7241.291) (-7197.006) -- 1:19:12
Average standard deviation of split frequencies: 0.050051
41000 -- [-7158.783] (-7209.024) (-7235.377) (-7164.513) * [-7156.699] (-7232.329) (-7209.188) (-7185.361) -- 1:19:08
42000 -- (-7152.302) (-7221.010) (-7242.831) [-7158.022] * [-7142.139] (-7230.914) (-7188.475) (-7208.144) -- 1:19:04
43000 -- (-7188.723) (-7212.326) (-7255.776) [-7161.499] * [-7154.658] (-7220.473) (-7179.243) (-7209.013) -- 1:19:00
44000 -- (-7186.323) (-7199.280) (-7232.620) [-7168.106] * [-7184.835] (-7195.873) (-7200.188) (-7221.364) -- 1:18:56
45000 -- (-7183.785) (-7208.293) (-7181.780) [-7169.117] * [-7168.653] (-7198.919) (-7176.823) (-7205.953) -- 1:18:31
Average standard deviation of split frequencies: 0.044940
46000 -- (-7221.947) (-7197.859) (-7201.344) [-7164.956] * (-7180.978) [-7198.795] (-7190.401) (-7185.197) -- 1:18:27
47000 -- (-7206.395) [-7179.750] (-7211.993) (-7195.070) * [-7182.479] (-7188.367) (-7227.773) (-7192.770) -- 1:18:24
48000 -- [-7180.073] (-7202.175) (-7206.402) (-7187.421) * [-7179.504] (-7207.917) (-7247.425) (-7198.015) -- 1:18:00
49000 -- (-7183.994) (-7169.436) (-7223.663) [-7162.382] * (-7183.680) [-7196.217] (-7212.008) (-7204.607) -- 1:17:57
50000 -- (-7162.954) [-7165.120] (-7196.033) (-7176.605) * [-7174.026] (-7203.894) (-7236.078) (-7188.087) -- 1:17:54
Average standard deviation of split frequencies: 0.042834
51000 -- [-7154.281] (-7175.055) (-7215.621) (-7190.757) * [-7168.522] (-7237.243) (-7224.346) (-7181.926) -- 1:17:50
52000 -- [-7168.337] (-7187.212) (-7203.493) (-7206.657) * [-7167.549] (-7245.497) (-7222.734) (-7191.999) -- 1:17:28
53000 -- [-7150.114] (-7193.310) (-7209.347) (-7191.927) * [-7178.126] (-7216.269) (-7250.693) (-7194.594) -- 1:17:25
54000 -- [-7155.502] (-7189.246) (-7192.621) (-7177.610) * [-7173.310] (-7224.005) (-7230.501) (-7191.644) -- 1:17:22
55000 -- [-7161.311] (-7177.018) (-7218.843) (-7184.170) * (-7204.377) (-7194.419) (-7235.776) [-7171.660] -- 1:17:19
Average standard deviation of split frequencies: 0.040036
56000 -- (-7179.073) [-7174.628] (-7192.152) (-7186.319) * (-7185.535) [-7182.362] (-7240.210) (-7176.279) -- 1:16:58
57000 -- [-7165.914] (-7182.470) (-7188.571) (-7205.758) * (-7176.114) [-7170.019] (-7229.689) (-7193.143) -- 1:16:55
58000 -- (-7178.594) [-7159.475] (-7203.041) (-7208.101) * (-7174.205) [-7174.729] (-7211.905) (-7175.020) -- 1:16:52
59000 -- (-7186.840) [-7150.194] (-7203.703) (-7188.883) * (-7183.237) [-7169.934] (-7225.855) (-7195.449) -- 1:16:49
60000 -- (-7191.647) [-7156.054] (-7195.633) (-7212.931) * (-7188.131) [-7161.084] (-7207.873) (-7210.722) -- 1:16:30
Average standard deviation of split frequencies: 0.038460
61000 -- (-7204.983) [-7168.671] (-7238.259) (-7196.304) * (-7188.929) [-7160.035] (-7229.291) (-7226.276) -- 1:16:27
62000 -- (-7173.077) [-7168.276] (-7235.551) (-7191.990) * [-7169.672] (-7175.223) (-7231.398) (-7225.714) -- 1:16:24
63000 -- (-7156.244) [-7168.571] (-7229.764) (-7201.996) * (-7186.375) [-7176.268] (-7217.448) (-7207.266) -- 1:16:20
64000 -- [-7164.170] (-7176.472) (-7243.990) (-7184.395) * [-7169.294] (-7171.191) (-7229.160) (-7208.896) -- 1:16:03
65000 -- [-7188.571] (-7210.140) (-7222.491) (-7201.814) * (-7195.635) [-7174.421] (-7248.511) (-7213.439) -- 1:15:59
Average standard deviation of split frequencies: 0.035746
66000 -- [-7176.455] (-7192.340) (-7248.260) (-7197.104) * (-7174.120) [-7164.685] (-7229.684) (-7220.147) -- 1:15:56
67000 -- (-7178.807) [-7160.104] (-7218.864) (-7187.811) * [-7175.680] (-7181.604) (-7207.165) (-7216.430) -- 1:15:39
68000 -- [-7172.977] (-7188.105) (-7182.773) (-7204.225) * (-7197.590) [-7176.462] (-7221.649) (-7219.945) -- 1:15:36
69000 -- (-7180.878) [-7190.176] (-7216.815) (-7219.815) * (-7211.503) [-7180.602] (-7205.096) (-7222.338) -- 1:15:33
70000 -- (-7208.040) (-7187.849) (-7168.261) [-7194.385] * (-7192.015) [-7162.967] (-7190.193) (-7219.371) -- 1:15:30
Average standard deviation of split frequencies: 0.034005
71000 -- (-7207.223) (-7197.210) (-7177.495) [-7187.437] * (-7180.184) [-7161.611] (-7239.883) (-7202.987) -- 1:15:27
72000 -- (-7235.570) (-7207.968) [-7164.492] (-7175.724) * [-7183.125] (-7175.931) (-7219.311) (-7209.738) -- 1:15:11
73000 -- (-7198.032) (-7240.335) [-7176.355] (-7173.708) * [-7172.815] (-7198.681) (-7202.940) (-7210.434) -- 1:15:08
74000 -- (-7195.517) (-7229.057) [-7170.171] (-7176.586) * [-7197.012] (-7177.379) (-7212.715) (-7205.656) -- 1:15:04
75000 -- (-7201.986) (-7204.125) (-7174.538) [-7170.619] * (-7169.718) [-7168.075] (-7211.980) (-7206.990) -- 1:15:01
Average standard deviation of split frequencies: 0.035107
76000 -- (-7195.397) (-7208.502) [-7174.093] (-7177.301) * [-7159.737] (-7173.640) (-7207.582) (-7217.714) -- 1:14:58
77000 -- (-7186.805) (-7194.086) [-7183.178] (-7183.532) * (-7181.261) [-7185.012] (-7224.576) (-7195.197) -- 1:14:43
78000 -- (-7199.944) (-7217.516) [-7194.622] (-7187.241) * [-7186.503] (-7185.886) (-7195.903) (-7197.700) -- 1:14:39
79000 -- (-7189.175) (-7225.101) (-7181.703) [-7191.135] * (-7177.743) (-7202.332) (-7171.415) [-7173.663] -- 1:14:36
80000 -- (-7220.122) (-7217.361) (-7191.838) [-7182.960] * (-7188.261) (-7193.579) [-7181.260] (-7175.593) -- 1:14:33
Average standard deviation of split frequencies: 0.037437
81000 -- (-7233.962) (-7200.543) (-7188.920) [-7161.823] * [-7167.073] (-7208.766) (-7193.465) (-7194.895) -- 1:14:18
82000 -- (-7203.197) (-7218.836) [-7180.566] (-7173.544) * (-7185.862) (-7221.916) (-7205.975) [-7191.733] -- 1:14:15
83000 -- (-7186.271) (-7193.673) (-7180.660) [-7173.327] * [-7155.412] (-7231.691) (-7196.205) (-7196.771) -- 1:14:12
84000 -- (-7192.362) [-7162.388] (-7168.523) (-7206.518) * [-7167.726] (-7220.292) (-7169.195) (-7177.763) -- 1:14:09
85000 -- (-7206.786) (-7172.639) [-7178.920] (-7199.750) * (-7171.526) (-7201.747) [-7170.969] (-7184.314) -- 1:14:05
Average standard deviation of split frequencies: 0.036823
86000 -- (-7200.468) [-7174.303] (-7179.984) (-7184.008) * (-7188.094) (-7197.815) [-7166.912] (-7181.372) -- 1:13:51
87000 -- (-7173.454) (-7199.784) [-7176.712] (-7185.193) * (-7194.537) (-7212.960) (-7178.510) [-7175.951] -- 1:13:48
88000 -- [-7178.441] (-7184.079) (-7174.785) (-7214.144) * (-7185.705) (-7191.444) (-7205.346) [-7171.870] -- 1:13:45
89000 -- (-7183.762) [-7181.203] (-7210.240) (-7238.777) * (-7181.207) (-7212.645) [-7182.191] (-7221.332) -- 1:13:41
90000 -- [-7177.446] (-7202.506) (-7218.716) (-7209.797) * (-7196.548) (-7212.345) [-7177.069] (-7228.969) -- 1:13:28
Average standard deviation of split frequencies: 0.037232
91000 -- [-7175.341] (-7185.610) (-7226.397) (-7210.779) * (-7210.141) (-7211.324) [-7176.404] (-7236.438) -- 1:13:25
92000 -- [-7184.422] (-7221.577) (-7223.264) (-7196.086) * (-7177.385) (-7203.796) [-7185.394] (-7218.415) -- 1:13:21
93000 -- (-7207.549) (-7242.761) (-7215.310) [-7174.518] * [-7176.464] (-7211.315) (-7185.782) (-7227.282) -- 1:13:18
94000 -- (-7215.323) (-7225.028) [-7192.529] (-7186.294) * (-7191.829) (-7188.287) [-7186.475] (-7208.627) -- 1:13:15
95000 -- (-7186.224) (-7223.219) (-7213.421) [-7183.553] * (-7223.490) (-7191.556) [-7186.806] (-7198.077) -- 1:13:02
Average standard deviation of split frequencies: 0.038253
96000 -- [-7166.147] (-7214.229) (-7211.423) (-7198.440) * (-7194.078) (-7195.583) (-7190.183) [-7169.909] -- 1:12:58
97000 -- [-7163.926] (-7205.976) (-7218.922) (-7213.318) * (-7222.842) (-7195.378) (-7178.565) [-7167.941] -- 1:12:55
98000 -- [-7157.801] (-7181.669) (-7224.839) (-7206.176) * (-7208.579) (-7212.080) (-7203.191) [-7166.885] -- 1:12:51
99000 -- (-7189.059) (-7204.689) (-7213.813) [-7191.474] * (-7207.787) (-7191.737) [-7175.003] (-7160.537) -- 1:12:48
100000 -- [-7174.499] (-7199.640) (-7217.989) (-7200.143) * (-7195.034) (-7203.210) [-7172.007] (-7174.440) -- 1:12:36
Average standard deviation of split frequencies: 0.036618
101000 -- (-7182.619) [-7169.935] (-7214.394) (-7229.920) * (-7203.268) (-7237.231) [-7178.496] (-7194.023) -- 1:12:32
102000 -- [-7196.964] (-7184.121) (-7198.909) (-7188.161) * (-7201.327) (-7218.627) (-7174.111) [-7171.389] -- 1:12:29
103000 -- (-7214.464) [-7158.530] (-7197.912) (-7194.100) * (-7226.420) (-7221.914) (-7200.172) [-7158.967] -- 1:12:25
104000 -- (-7202.815) [-7167.402] (-7202.857) (-7194.426) * (-7191.291) (-7216.310) (-7195.019) [-7157.359] -- 1:12:13
105000 -- (-7212.728) [-7170.644] (-7221.200) (-7187.981) * (-7197.721) (-7219.627) (-7182.681) [-7153.190] -- 1:12:10
Average standard deviation of split frequencies: 0.034304
106000 -- (-7213.003) (-7176.560) (-7213.475) [-7187.751] * (-7196.743) (-7221.136) (-7191.648) [-7155.782] -- 1:12:06
107000 -- (-7233.579) [-7178.332] (-7203.937) (-7177.156) * (-7176.829) (-7223.855) (-7209.167) [-7152.856] -- 1:11:54
108000 -- (-7210.802) (-7163.263) (-7214.159) [-7169.599] * (-7177.593) (-7225.201) (-7192.851) [-7174.174] -- 1:11:51
109000 -- (-7202.179) [-7181.651] (-7186.342) (-7180.348) * (-7208.307) (-7228.079) (-7192.751) [-7178.458] -- 1:11:47
110000 -- (-7229.415) [-7186.919] (-7177.114) (-7190.149) * [-7191.481] (-7255.585) (-7195.954) (-7166.341) -- 1:11:44
Average standard deviation of split frequencies: 0.033285
111000 -- (-7201.976) (-7226.443) [-7150.991] (-7195.271) * (-7196.185) (-7243.796) (-7177.985) [-7170.255] -- 1:11:32
112000 -- (-7198.630) (-7215.372) (-7166.074) [-7177.249] * (-7210.346) (-7209.288) [-7173.055] (-7180.656) -- 1:11:29
113000 -- (-7201.898) (-7213.730) (-7169.501) [-7166.289] * (-7207.260) (-7239.462) [-7183.363] (-7176.648) -- 1:11:25
114000 -- (-7183.735) (-7219.614) [-7167.990] (-7194.447) * (-7237.876) (-7196.268) (-7218.728) [-7172.622] -- 1:11:14
115000 -- (-7195.157) (-7218.306) [-7181.150] (-7194.061) * [-7197.492] (-7197.467) (-7212.594) (-7178.792) -- 1:11:11
Average standard deviation of split frequencies: 0.033969
116000 -- (-7196.164) (-7226.226) (-7180.540) [-7161.497] * (-7224.148) (-7213.686) (-7189.626) [-7185.900] -- 1:11:07
117000 -- (-7210.692) (-7227.921) (-7174.953) [-7172.899] * (-7220.182) (-7230.953) (-7188.250) [-7163.382] -- 1:11:04
118000 -- (-7230.382) (-7212.834) [-7172.132] (-7208.156) * (-7221.771) (-7240.896) (-7183.701) [-7162.796] -- 1:11:00
119000 -- (-7196.017) (-7229.403) [-7161.998] (-7198.796) * (-7212.983) (-7203.017) (-7170.775) [-7169.305] -- 1:10:49
120000 -- [-7173.287] (-7225.104) (-7162.889) (-7217.948) * (-7215.267) (-7192.836) (-7180.603) [-7163.460] -- 1:10:46
Average standard deviation of split frequencies: 0.035324
121000 -- (-7170.081) (-7230.124) [-7169.163] (-7208.736) * (-7230.382) (-7217.443) (-7184.133) [-7161.019] -- 1:10:42
122000 -- [-7176.399] (-7206.573) (-7184.845) (-7201.010) * (-7233.431) (-7208.572) (-7203.248) [-7159.782] -- 1:10:38
123000 -- (-7188.026) (-7219.729) [-7160.581] (-7194.220) * (-7231.211) (-7202.381) (-7225.242) [-7183.576] -- 1:10:35
124000 -- (-7194.675) (-7215.798) [-7180.162] (-7176.533) * (-7218.131) [-7181.686] (-7207.439) (-7192.145) -- 1:10:24
125000 -- (-7192.221) (-7215.464) [-7171.949] (-7191.479) * (-7214.402) [-7171.780] (-7189.954) (-7209.316) -- 1:10:21
Average standard deviation of split frequencies: 0.034144
126000 -- (-7189.201) (-7214.959) [-7168.040] (-7204.492) * (-7202.218) (-7190.677) (-7210.447) [-7173.880] -- 1:10:17
127000 -- (-7201.476) (-7217.705) [-7175.005] (-7202.217) * (-7229.445) [-7190.867] (-7216.361) (-7210.401) -- 1:10:13
128000 -- (-7183.811) (-7231.858) [-7158.937] (-7194.511) * (-7185.813) (-7209.241) (-7199.654) [-7172.185] -- 1:10:10
129000 -- (-7187.002) (-7215.152) [-7156.935] (-7200.523) * (-7182.936) (-7211.539) (-7205.007) [-7162.393] -- 1:10:06
130000 -- (-7200.151) (-7209.516) [-7157.001] (-7214.864) * [-7175.922] (-7194.413) (-7200.385) (-7169.940) -- 1:09:56
Average standard deviation of split frequencies: 0.035561
131000 -- (-7217.241) (-7216.243) [-7158.239] (-7250.091) * (-7204.942) (-7209.073) (-7213.816) [-7176.784] -- 1:09:52
132000 -- (-7193.646) (-7206.810) [-7166.596] (-7221.244) * (-7210.610) (-7199.278) (-7244.729) [-7170.320] -- 1:09:48
133000 -- [-7180.384] (-7189.627) (-7191.559) (-7221.964) * (-7189.602) (-7195.996) (-7214.688) [-7173.901] -- 1:09:45
134000 -- [-7170.069] (-7179.569) (-7194.485) (-7186.824) * (-7176.526) (-7226.908) (-7197.512) [-7156.253] -- 1:09:41
135000 -- (-7181.608) [-7170.479] (-7206.705) (-7214.783) * [-7175.006] (-7198.733) (-7209.862) (-7163.553) -- 1:09:31
Average standard deviation of split frequencies: 0.035781
136000 -- (-7197.543) [-7172.832] (-7190.685) (-7192.763) * (-7179.186) (-7216.226) (-7227.181) [-7162.957] -- 1:09:27
137000 -- (-7217.881) [-7189.723] (-7189.366) (-7217.180) * (-7199.560) (-7208.360) [-7203.184] (-7187.067) -- 1:09:23
138000 -- (-7237.169) (-7189.512) [-7177.764] (-7178.482) * (-7222.992) (-7203.790) (-7196.683) [-7180.514] -- 1:09:20
139000 -- (-7222.929) (-7202.251) [-7166.232] (-7167.100) * (-7213.583) (-7244.106) [-7184.277] (-7169.726) -- 1:09:16
140000 -- (-7214.525) (-7198.641) [-7178.701] (-7177.196) * (-7212.227) (-7211.930) [-7169.109] (-7188.625) -- 1:09:12
Average standard deviation of split frequencies: 0.035807
141000 -- (-7216.496) (-7181.234) [-7188.863] (-7190.612) * (-7213.746) (-7228.387) [-7158.808] (-7177.857) -- 1:09:08
142000 -- (-7264.085) [-7166.501] (-7197.740) (-7201.019) * (-7227.968) (-7212.938) (-7197.978) [-7165.239] -- 1:09:04
143000 -- (-7242.789) [-7152.376] (-7194.909) (-7192.321) * (-7244.252) (-7212.342) (-7220.171) [-7164.292] -- 1:08:55
144000 -- (-7237.473) (-7181.603) (-7184.693) [-7184.621] * (-7228.837) [-7205.587] (-7240.161) (-7178.822) -- 1:08:51
145000 -- (-7203.827) [-7171.012] (-7191.537) (-7182.910) * (-7239.117) (-7172.665) (-7198.504) [-7167.377] -- 1:08:47
Average standard deviation of split frequencies: 0.033570
146000 -- (-7219.362) [-7166.576] (-7189.191) (-7181.316) * (-7222.747) [-7164.323] (-7208.037) (-7200.189) -- 1:08:43
147000 -- (-7211.064) (-7174.008) [-7187.298] (-7185.828) * (-7223.743) [-7166.509] (-7219.232) (-7201.040) -- 1:08:39
148000 -- (-7208.548) (-7186.531) (-7197.270) [-7176.242] * (-7225.062) [-7167.734] (-7207.440) (-7207.810) -- 1:08:36
149000 -- (-7186.020) [-7166.534] (-7217.939) (-7178.036) * (-7233.689) [-7170.852] (-7189.834) (-7206.460) -- 1:08:32
150000 -- (-7177.583) [-7190.277] (-7201.017) (-7187.574) * (-7213.258) (-7188.126) [-7181.786] (-7206.499) -- 1:08:28
Average standard deviation of split frequencies: 0.032819
151000 -- (-7202.064) [-7184.666] (-7240.536) (-7219.693) * (-7196.914) [-7156.976] (-7199.543) (-7227.830) -- 1:08:24
152000 -- (-7180.933) [-7171.189] (-7225.206) (-7232.356) * (-7218.275) (-7159.199) [-7161.052] (-7216.829) -- 1:08:20
153000 -- (-7198.049) [-7156.745] (-7213.500) (-7211.977) * (-7238.062) [-7168.541] (-7173.726) (-7228.500) -- 1:08:11
154000 -- (-7208.396) [-7166.701] (-7192.903) (-7208.984) * (-7220.113) [-7166.223] (-7180.901) (-7234.295) -- 1:08:07
155000 -- (-7199.307) [-7189.417] (-7192.077) (-7211.416) * (-7237.831) (-7202.643) [-7180.318] (-7215.584) -- 1:08:03
Average standard deviation of split frequencies: 0.032174
156000 -- (-7209.881) [-7180.171] (-7189.314) (-7214.734) * (-7222.616) [-7170.864] (-7180.977) (-7227.981) -- 1:07:59
157000 -- (-7187.743) (-7181.803) [-7165.101] (-7210.636) * (-7218.627) [-7174.699] (-7191.954) (-7190.116) -- 1:07:55
158000 -- (-7192.018) [-7166.043] (-7195.449) (-7202.017) * (-7213.682) [-7188.732] (-7181.053) (-7186.387) -- 1:07:51
159000 -- (-7203.889) [-7163.356] (-7180.751) (-7221.439) * (-7205.346) [-7182.032] (-7182.969) (-7191.720) -- 1:07:47
160000 -- (-7182.052) (-7180.496) [-7182.377] (-7243.776) * (-7183.069) [-7181.906] (-7192.738) (-7205.225) -- 1:07:43
Average standard deviation of split frequencies: 0.032808
161000 -- (-7178.776) [-7170.935] (-7189.118) (-7224.397) * [-7162.539] (-7214.728) (-7196.286) (-7213.287) -- 1:07:34
162000 -- [-7172.749] (-7204.653) (-7183.697) (-7211.146) * (-7190.930) (-7204.474) (-7189.996) [-7189.047] -- 1:07:30
163000 -- [-7161.589] (-7193.563) (-7199.696) (-7209.060) * (-7206.591) (-7235.907) [-7177.025] (-7209.353) -- 1:07:26
164000 -- [-7161.562] (-7218.332) (-7193.162) (-7247.761) * (-7203.803) (-7220.471) [-7179.468] (-7198.569) -- 1:07:22
165000 -- (-7162.122) (-7197.271) [-7174.399] (-7243.728) * (-7196.887) (-7208.823) [-7166.692] (-7190.720) -- 1:07:18
Average standard deviation of split frequencies: 0.031102
166000 -- (-7195.761) [-7160.152] (-7184.486) (-7212.103) * (-7196.755) (-7229.672) [-7154.754] (-7190.739) -- 1:07:14
167000 -- (-7190.930) [-7157.594] (-7187.218) (-7215.015) * (-7190.667) (-7220.721) [-7163.986] (-7189.544) -- 1:07:10
168000 -- [-7190.449] (-7164.751) (-7196.670) (-7207.941) * (-7218.604) (-7195.228) [-7166.014] (-7186.163) -- 1:07:01
169000 -- (-7175.338) [-7146.155] (-7208.038) (-7234.432) * (-7201.296) (-7227.350) (-7169.839) [-7174.199] -- 1:06:57
170000 -- (-7179.990) [-7149.640] (-7199.075) (-7196.490) * (-7202.414) (-7233.290) [-7160.428] (-7190.023) -- 1:06:53
Average standard deviation of split frequencies: 0.028738
171000 -- (-7195.838) [-7151.973] (-7201.671) (-7184.200) * (-7222.038) (-7216.522) [-7172.433] (-7191.335) -- 1:06:49
172000 -- (-7226.662) (-7186.869) (-7222.294) [-7167.646] * (-7193.038) (-7227.478) [-7180.787] (-7200.997) -- 1:06:45
173000 -- (-7193.253) (-7201.460) (-7251.890) [-7160.054] * (-7194.704) (-7215.217) [-7184.614] (-7199.232) -- 1:06:41
174000 -- (-7183.858) (-7196.625) (-7256.933) [-7156.683] * (-7215.949) (-7217.714) [-7177.039] (-7179.911) -- 1:06:37
175000 -- (-7193.478) (-7225.160) (-7222.693) [-7162.596] * (-7200.607) (-7216.993) (-7186.575) [-7153.333] -- 1:06:32
Average standard deviation of split frequencies: 0.026197
176000 -- (-7207.963) (-7249.542) (-7196.560) [-7179.653] * (-7213.875) (-7224.804) (-7171.404) [-7167.233] -- 1:06:24
177000 -- (-7188.492) (-7222.945) (-7185.772) [-7181.316] * (-7189.996) (-7208.392) (-7193.254) [-7173.207] -- 1:06:20
178000 -- (-7189.126) (-7223.233) (-7180.814) [-7167.301] * (-7212.218) (-7221.109) (-7179.776) [-7167.059] -- 1:06:16
179000 -- [-7167.336] (-7234.007) (-7194.968) (-7169.230) * (-7182.371) (-7242.120) (-7183.949) [-7164.013] -- 1:06:11
180000 -- (-7188.738) (-7200.588) (-7219.726) [-7195.390] * (-7177.780) (-7241.424) (-7187.812) [-7165.365] -- 1:06:07
Average standard deviation of split frequencies: 0.025686
181000 -- (-7185.537) (-7214.675) [-7187.475] (-7200.794) * (-7193.288) (-7220.251) (-7158.613) [-7156.268] -- 1:06:03
182000 -- (-7177.983) (-7208.261) [-7171.842] (-7226.153) * (-7211.116) (-7228.365) (-7173.382) [-7170.339] -- 1:05:59
183000 -- (-7168.770) (-7190.538) [-7171.419] (-7200.397) * (-7208.289) (-7218.490) (-7188.376) [-7176.931] -- 1:05:55
184000 -- [-7178.032] (-7204.543) (-7179.207) (-7198.860) * (-7173.300) (-7240.894) (-7204.067) [-7169.055] -- 1:05:46
185000 -- (-7184.971) (-7209.946) [-7159.486] (-7209.632) * [-7172.601] (-7233.325) (-7216.330) (-7160.064) -- 1:05:42
Average standard deviation of split frequencies: 0.025041
186000 -- (-7209.452) (-7222.374) (-7191.300) [-7163.981] * (-7190.986) (-7230.242) (-7214.678) [-7163.795] -- 1:05:38
187000 -- (-7217.525) (-7184.218) (-7215.239) [-7172.797] * (-7204.971) (-7198.812) (-7210.408) [-7177.573] -- 1:05:34
188000 -- (-7239.212) (-7217.288) (-7208.810) [-7164.243] * (-7213.082) (-7181.975) (-7214.945) [-7187.753] -- 1:05:30
189000 -- (-7205.782) (-7211.886) (-7219.209) [-7165.162] * (-7202.729) (-7188.757) (-7221.879) [-7175.761] -- 1:05:26
190000 -- (-7204.661) (-7235.866) (-7195.274) [-7168.042] * (-7199.825) (-7204.263) (-7222.568) [-7167.520] -- 1:05:22
Average standard deviation of split frequencies: 0.024905
191000 -- (-7202.229) (-7238.652) [-7184.738] (-7183.588) * (-7179.276) (-7238.492) (-7211.820) [-7161.286] -- 1:05:13
192000 -- (-7211.454) (-7262.326) (-7178.252) [-7187.900] * [-7162.158] (-7211.815) (-7208.350) (-7165.543) -- 1:05:09
193000 -- (-7233.525) (-7248.246) (-7189.102) [-7180.754] * [-7159.394] (-7222.403) (-7189.851) (-7168.180) -- 1:05:05
194000 -- (-7238.239) (-7219.568) [-7190.704] (-7187.146) * [-7156.110] (-7191.930) (-7185.544) (-7177.887) -- 1:05:01
195000 -- (-7210.244) (-7195.541) [-7167.807] (-7167.755) * (-7154.015) (-7210.311) (-7197.503) [-7170.043] -- 1:04:57
Average standard deviation of split frequencies: 0.024966
196000 -- (-7183.121) (-7219.651) (-7203.639) [-7177.955] * [-7159.606] (-7226.009) (-7217.931) (-7167.706) -- 1:04:52
197000 -- (-7204.916) (-7197.421) (-7207.945) [-7170.262] * [-7168.692] (-7190.419) (-7205.201) (-7185.511) -- 1:04:44
198000 -- (-7203.479) (-7203.616) [-7207.849] (-7177.236) * [-7165.533] (-7195.707) (-7225.817) (-7197.478) -- 1:04:40
199000 -- (-7192.487) (-7204.497) (-7207.965) [-7175.519] * [-7175.433] (-7207.476) (-7208.638) (-7189.650) -- 1:04:36
200000 -- (-7179.043) (-7218.706) (-7192.085) [-7168.079] * [-7184.687] (-7189.242) (-7211.663) (-7195.706) -- 1:04:31
Average standard deviation of split frequencies: 0.024110
201000 -- (-7176.608) (-7202.737) (-7208.421) [-7187.597] * (-7182.866) [-7185.103] (-7189.065) (-7242.276) -- 1:04:27
202000 -- [-7210.178] (-7224.393) (-7196.742) (-7217.602) * [-7159.331] (-7185.330) (-7215.994) (-7207.658) -- 1:04:23
203000 -- (-7220.675) (-7231.375) (-7202.230) [-7183.818] * (-7169.137) (-7184.652) (-7230.159) [-7192.324] -- 1:04:19
204000 -- (-7226.384) (-7195.212) (-7204.605) [-7163.791] * (-7195.481) (-7212.953) (-7213.021) [-7172.636] -- 1:04:11
205000 -- (-7223.228) (-7217.495) (-7187.001) [-7163.634] * (-7226.795) (-7192.183) (-7195.038) [-7177.543] -- 1:04:07
Average standard deviation of split frequencies: 0.024639
206000 -- (-7229.817) (-7186.682) (-7186.409) [-7165.186] * (-7213.363) (-7188.881) (-7200.807) [-7171.839] -- 1:04:02
207000 -- (-7258.455) (-7181.370) (-7216.803) [-7151.630] * (-7206.698) (-7192.673) (-7195.797) [-7172.117] -- 1:03:58
208000 -- (-7233.913) (-7180.734) (-7237.938) [-7165.062] * (-7213.041) (-7185.228) (-7236.334) [-7160.436] -- 1:03:54
209000 -- (-7220.773) (-7170.243) (-7216.716) [-7172.308] * (-7236.240) (-7173.782) (-7212.914) [-7165.029] -- 1:03:50
210000 -- (-7227.408) (-7153.287) (-7200.586) [-7167.106] * (-7205.592) (-7182.870) (-7207.444) [-7168.565] -- 1:03:42
Average standard deviation of split frequencies: 0.024366
211000 -- (-7207.230) (-7181.420) [-7182.517] (-7180.590) * [-7196.937] (-7205.154) (-7197.347) (-7177.088) -- 1:03:37
212000 -- (-7225.248) [-7177.711] (-7223.091) (-7167.661) * (-7196.051) (-7201.923) (-7202.240) [-7146.630] -- 1:03:33
213000 -- (-7206.705) (-7172.299) (-7201.416) [-7161.976] * (-7216.405) (-7193.871) (-7198.851) [-7172.357] -- 1:03:29
214000 -- (-7181.502) [-7180.481] (-7197.437) (-7189.265) * (-7223.295) (-7177.926) (-7189.222) [-7168.967] -- 1:03:25
215000 -- (-7213.294) [-7157.831] (-7190.649) (-7204.563) * (-7243.828) (-7186.181) (-7179.365) [-7160.766] -- 1:03:20
Average standard deviation of split frequencies: 0.023314
216000 -- (-7203.703) [-7150.810] (-7176.483) (-7197.183) * (-7253.666) (-7172.751) (-7183.370) [-7166.590] -- 1:03:16
217000 -- (-7200.164) [-7166.753] (-7214.215) (-7204.903) * (-7227.966) (-7177.835) (-7193.469) [-7182.212] -- 1:03:12
218000 -- (-7201.355) (-7184.998) (-7189.231) [-7185.152] * (-7235.117) (-7192.248) [-7181.316] (-7171.497) -- 1:03:08
219000 -- (-7203.393) (-7183.956) [-7166.344] (-7176.956) * (-7238.016) (-7203.958) (-7165.653) [-7156.411] -- 1:03:03
220000 -- (-7186.540) (-7186.917) (-7191.060) [-7158.419] * (-7237.510) (-7188.306) [-7172.285] (-7182.946) -- 1:02:59
Average standard deviation of split frequencies: 0.023910
221000 -- (-7197.714) (-7172.810) (-7196.147) [-7169.243] * (-7254.662) (-7176.669) (-7188.436) [-7167.820] -- 1:02:55
222000 -- (-7207.898) [-7160.003] (-7199.998) (-7191.683) * (-7234.341) [-7171.257] (-7185.592) (-7190.891) -- 1:02:50
223000 -- (-7214.033) [-7150.297] (-7215.880) (-7177.836) * (-7221.865) (-7177.847) (-7188.882) [-7180.301] -- 1:02:46
224000 -- (-7212.278) [-7178.067] (-7229.633) (-7181.016) * (-7224.710) (-7189.418) (-7176.795) [-7173.066] -- 1:02:42
225000 -- (-7188.251) (-7187.259) (-7216.550) [-7163.319] * (-7193.476) (-7234.200) [-7167.533] (-7171.778) -- 1:02:37
Average standard deviation of split frequencies: 0.023086
226000 -- (-7215.447) [-7176.999] (-7218.234) (-7192.769) * (-7193.600) (-7223.673) [-7185.808] (-7183.059) -- 1:02:30
227000 -- (-7197.418) [-7181.563] (-7229.929) (-7204.006) * (-7189.005) (-7236.335) [-7171.252] (-7203.421) -- 1:02:25
228000 -- (-7205.861) (-7190.499) (-7201.902) [-7190.265] * (-7200.577) (-7244.199) [-7163.996] (-7189.655) -- 1:02:21
229000 -- (-7232.972) (-7179.765) (-7200.429) [-7182.215] * (-7192.435) (-7251.075) [-7157.245] (-7181.692) -- 1:02:17
230000 -- (-7205.292) (-7178.188) (-7203.924) [-7170.811] * (-7186.000) (-7232.365) (-7184.288) [-7161.088] -- 1:02:12
Average standard deviation of split frequencies: 0.022459
231000 -- [-7187.206] (-7193.811) (-7190.344) (-7215.079) * (-7188.093) (-7229.881) (-7203.838) [-7161.641] -- 1:02:08
232000 -- [-7184.956] (-7214.722) (-7206.634) (-7201.855) * (-7178.784) (-7205.919) (-7203.878) [-7169.892] -- 1:02:00
233000 -- (-7192.441) (-7200.332) (-7223.477) [-7187.682] * [-7188.356] (-7207.324) (-7193.670) (-7175.577) -- 1:01:56
234000 -- (-7217.167) (-7187.930) (-7196.318) [-7171.336] * (-7208.027) (-7211.362) (-7184.347) [-7186.085] -- 1:01:52
235000 -- (-7209.613) [-7172.648] (-7214.835) (-7177.144) * (-7211.432) (-7195.235) (-7225.333) [-7193.692] -- 1:01:47
Average standard deviation of split frequencies: 0.021708
236000 -- (-7178.781) (-7186.160) (-7228.205) [-7184.878] * (-7209.697) [-7182.940] (-7176.279) (-7180.432) -- 1:01:43
237000 -- (-7222.308) (-7184.691) (-7227.186) [-7173.215] * (-7201.145) (-7193.872) (-7207.066) [-7179.246] -- 1:01:39
238000 -- (-7212.532) (-7196.035) (-7217.386) [-7180.888] * (-7198.995) (-7210.545) (-7231.562) [-7165.954] -- 1:01:34
239000 -- (-7188.274) (-7196.130) (-7222.190) [-7184.046] * (-7187.662) (-7221.034) (-7240.886) [-7189.264] -- 1:01:30
240000 -- (-7190.561) (-7198.540) (-7217.272) [-7169.497] * (-7192.414) (-7201.509) (-7243.744) [-7162.024] -- 1:01:26
Average standard deviation of split frequencies: 0.021472
241000 -- [-7179.169] (-7203.156) (-7235.620) (-7167.586) * (-7191.975) (-7221.054) (-7245.664) [-7167.996] -- 1:01:21
242000 -- [-7172.663] (-7192.688) (-7188.358) (-7176.253) * (-7203.951) (-7206.869) (-7255.967) [-7161.326] -- 1:01:17
243000 -- (-7195.369) (-7171.329) [-7178.856] (-7186.774) * (-7207.470) (-7180.975) (-7238.789) [-7162.420] -- 1:01:09
244000 -- (-7192.869) (-7180.546) [-7166.226] (-7175.049) * (-7217.253) [-7184.081] (-7237.711) (-7190.115) -- 1:01:05
245000 -- (-7186.930) (-7169.388) [-7163.049] (-7181.583) * (-7253.530) (-7195.224) [-7188.734] (-7195.530) -- 1:01:00
Average standard deviation of split frequencies: 0.021601
246000 -- [-7159.319] (-7186.460) (-7189.698) (-7197.013) * (-7202.336) [-7169.113] (-7186.647) (-7189.347) -- 1:00:56
247000 -- [-7150.404] (-7219.404) (-7195.575) (-7189.106) * (-7200.799) (-7172.928) [-7174.342] (-7198.190) -- 1:00:52
248000 -- [-7173.341] (-7217.959) (-7213.902) (-7176.629) * (-7211.418) [-7170.480] (-7150.121) (-7190.035) -- 1:00:47
249000 -- [-7180.545] (-7215.558) (-7214.449) (-7175.485) * (-7203.558) (-7177.873) [-7153.186] (-7192.197) -- 1:00:43
250000 -- (-7219.823) (-7224.296) (-7194.883) [-7177.043] * (-7201.345) [-7162.135] (-7194.920) (-7184.673) -- 1:00:39
Average standard deviation of split frequencies: 0.021384
251000 -- (-7216.391) (-7222.414) (-7191.989) [-7168.659] * (-7222.519) [-7168.702] (-7185.292) (-7185.835) -- 1:00:34
252000 -- (-7221.146) (-7187.639) [-7175.904] (-7176.123) * (-7223.327) (-7182.036) [-7166.670] (-7190.378) -- 1:00:30
253000 -- (-7212.005) (-7213.300) (-7198.574) [-7181.200] * (-7191.814) (-7198.361) [-7164.522] (-7192.252) -- 1:00:25
254000 -- (-7197.112) (-7212.121) (-7176.322) [-7175.296] * (-7219.935) (-7188.069) [-7186.906] (-7207.123) -- 1:00:21
255000 -- (-7227.320) (-7215.452) (-7192.317) [-7179.711] * (-7198.153) [-7176.226] (-7192.658) (-7203.615) -- 1:00:16
Average standard deviation of split frequencies: 0.021231
256000 -- (-7230.498) (-7185.094) (-7192.575) [-7175.191] * (-7201.174) [-7180.924] (-7186.181) (-7191.440) -- 1:00:09
257000 -- (-7222.203) (-7197.354) (-7217.641) [-7185.521] * (-7206.090) (-7194.248) [-7175.824] (-7188.951) -- 1:00:05
258000 -- (-7212.532) (-7198.517) (-7212.692) [-7166.742] * (-7229.452) (-7189.792) (-7176.220) [-7192.371] -- 1:00:00
259000 -- (-7188.594) [-7183.399] (-7211.236) (-7191.030) * (-7227.023) (-7190.099) [-7184.773] (-7185.933) -- 0:59:56
260000 -- [-7176.241] (-7182.768) (-7210.764) (-7255.281) * (-7217.702) [-7181.184] (-7191.302) (-7200.037) -- 0:59:51
Average standard deviation of split frequencies: 0.020644
261000 -- [-7167.207] (-7199.680) (-7214.922) (-7229.271) * (-7215.127) (-7193.263) [-7181.706] (-7191.303) -- 0:59:47
262000 -- (-7199.649) [-7177.247] (-7219.195) (-7224.669) * [-7202.254] (-7203.778) (-7187.659) (-7207.190) -- 0:59:42
263000 -- [-7191.227] (-7191.448) (-7211.889) (-7214.124) * (-7198.814) (-7205.298) [-7178.007] (-7213.531) -- 0:59:38
264000 -- (-7191.721) (-7197.343) [-7182.361] (-7223.957) * (-7190.070) [-7170.138] (-7162.188) (-7223.554) -- 0:59:36
265000 -- (-7184.985) (-7216.672) [-7177.619] (-7230.429) * (-7211.089) (-7197.853) [-7174.100] (-7230.261) -- 0:59:32
Average standard deviation of split frequencies: 0.020427
266000 -- (-7205.514) (-7195.273) [-7173.838] (-7222.280) * (-7224.373) (-7180.357) [-7172.038] (-7217.892) -- 0:59:27
267000 -- [-7175.635] (-7223.912) (-7179.714) (-7209.291) * (-7210.082) [-7185.261] (-7178.668) (-7230.016) -- 0:59:23
268000 -- [-7167.843] (-7227.671) (-7187.203) (-7193.414) * (-7205.104) (-7221.328) [-7196.598] (-7205.894) -- 0:59:18
269000 -- [-7165.693] (-7228.290) (-7188.674) (-7181.166) * [-7185.890] (-7220.625) (-7179.153) (-7214.533) -- 0:59:14
270000 -- [-7165.361] (-7221.346) (-7187.761) (-7191.291) * (-7196.401) (-7230.217) [-7174.556] (-7198.190) -- 0:59:09
Average standard deviation of split frequencies: 0.020057
271000 -- [-7166.233] (-7216.101) (-7211.372) (-7190.699) * (-7193.746) (-7209.076) (-7172.536) [-7194.368] -- 0:59:05
272000 -- [-7158.917] (-7198.048) (-7181.975) (-7165.805) * (-7179.027) (-7191.569) (-7193.183) [-7171.286] -- 0:59:00
273000 -- [-7163.336] (-7211.060) (-7198.742) (-7187.491) * (-7198.725) (-7164.980) (-7203.530) [-7169.275] -- 0:58:56
274000 -- (-7166.709) (-7204.223) (-7186.341) [-7161.829] * (-7232.372) (-7187.131) (-7192.199) [-7176.495] -- 0:58:51
275000 -- (-7181.398) (-7206.005) [-7161.614] (-7185.388) * (-7222.642) [-7178.489] (-7169.039) (-7188.536) -- 0:58:47
Average standard deviation of split frequencies: 0.020374
276000 -- [-7180.244] (-7197.675) (-7228.784) (-7190.821) * (-7215.159) [-7186.659] (-7196.121) (-7205.429) -- 0:58:42
277000 -- [-7170.482] (-7199.907) (-7200.298) (-7179.575) * (-7203.737) [-7196.485] (-7174.160) (-7190.091) -- 0:58:38
278000 -- (-7179.619) (-7201.353) (-7181.714) [-7162.212] * (-7221.774) (-7186.330) [-7181.644] (-7200.864) -- 0:58:33
279000 -- [-7160.042] (-7209.527) (-7182.179) (-7170.674) * (-7227.484) (-7181.958) [-7170.528] (-7197.303) -- 0:58:29
280000 -- [-7173.724] (-7206.335) (-7190.970) (-7182.275) * (-7233.095) [-7188.596] (-7170.853) (-7218.578) -- 0:58:24
Average standard deviation of split frequencies: 0.019801
281000 -- [-7162.817] (-7227.189) (-7207.420) (-7209.020) * (-7249.369) (-7172.064) [-7178.609] (-7210.526) -- 0:58:20
282000 -- [-7153.049] (-7219.012) (-7211.101) (-7184.480) * (-7257.867) (-7161.371) [-7167.441] (-7206.271) -- 0:58:15
283000 -- [-7173.377] (-7217.237) (-7238.052) (-7187.958) * (-7238.469) (-7171.766) (-7172.745) [-7177.027] -- 0:58:11
284000 -- [-7159.660] (-7250.343) (-7195.860) (-7192.755) * (-7223.140) [-7162.221] (-7193.692) (-7179.243) -- 0:58:06
285000 -- (-7190.172) (-7250.106) [-7161.228] (-7185.546) * (-7187.525) [-7154.429] (-7201.196) (-7178.836) -- 0:58:02
Average standard deviation of split frequencies: 0.019250
286000 -- (-7170.306) (-7229.615) [-7176.940] (-7204.376) * (-7209.049) (-7174.243) (-7181.951) [-7178.213] -- 0:57:57
287000 -- [-7174.249] (-7189.771) (-7180.421) (-7222.056) * (-7197.800) (-7175.578) (-7183.154) [-7167.087] -- 0:57:53
288000 -- [-7172.054] (-7179.499) (-7180.102) (-7221.379) * (-7213.852) (-7192.664) (-7186.071) [-7171.472] -- 0:57:48
289000 -- [-7168.569] (-7204.517) (-7204.672) (-7184.163) * (-7196.207) (-7212.441) (-7195.449) [-7153.823] -- 0:57:43
290000 -- [-7169.618] (-7214.816) (-7213.849) (-7181.929) * (-7196.517) (-7223.182) (-7190.726) [-7174.124] -- 0:57:39
Average standard deviation of split frequencies: 0.019350
291000 -- [-7155.774] (-7201.506) (-7212.323) (-7173.976) * (-7204.736) (-7226.419) (-7168.969) [-7173.479] -- 0:57:34
292000 -- [-7153.668] (-7204.401) (-7217.375) (-7162.776) * (-7207.448) (-7228.797) [-7151.163] (-7178.456) -- 0:57:27
293000 -- (-7177.096) (-7210.582) (-7201.083) [-7165.226] * (-7195.067) (-7252.128) [-7143.287] (-7195.767) -- 0:57:23
294000 -- [-7167.646] (-7213.698) (-7187.966) (-7180.311) * (-7184.000) (-7229.397) [-7157.377] (-7170.623) -- 0:57:18
295000 -- [-7162.935] (-7194.598) (-7220.022) (-7175.763) * (-7222.595) (-7230.520) (-7183.655) [-7162.374] -- 0:57:14
Average standard deviation of split frequencies: 0.018940
296000 -- [-7174.846] (-7213.433) (-7208.610) (-7175.682) * (-7214.693) (-7235.619) [-7170.569] (-7168.443) -- 0:57:09
297000 -- [-7189.014] (-7225.334) (-7220.417) (-7186.762) * (-7220.216) (-7214.596) [-7175.194] (-7178.195) -- 0:57:07
298000 -- [-7174.173] (-7223.205) (-7240.680) (-7205.024) * (-7207.404) (-7204.542) (-7182.783) [-7179.368] -- 0:57:00
299000 -- [-7180.158] (-7207.902) (-7225.011) (-7182.862) * (-7214.115) [-7191.147] (-7200.150) (-7185.077) -- 0:56:55
300000 -- (-7178.643) (-7219.247) (-7197.780) [-7186.032] * (-7224.909) (-7197.324) [-7181.039] (-7181.671) -- 0:56:51
Average standard deviation of split frequencies: 0.018108
301000 -- [-7179.155] (-7221.631) (-7184.622) (-7173.855) * (-7216.275) (-7189.543) [-7165.223] (-7184.753) -- 0:56:46
302000 -- [-7174.407] (-7233.597) (-7186.982) (-7181.932) * (-7210.987) (-7195.189) (-7164.800) [-7190.087] -- 0:56:42
303000 -- [-7161.021] (-7211.992) (-7196.463) (-7188.332) * (-7224.590) (-7191.479) [-7166.682] (-7205.926) -- 0:56:37
304000 -- [-7179.700] (-7241.787) (-7203.478) (-7181.108) * (-7236.330) (-7185.327) [-7164.076] (-7247.454) -- 0:56:33
305000 -- (-7192.171) (-7198.907) (-7197.648) [-7189.246] * (-7234.439) (-7172.695) [-7151.788] (-7220.369) -- 0:56:28
Average standard deviation of split frequencies: 0.017712
306000 -- (-7172.573) (-7171.723) (-7235.709) [-7175.620] * (-7214.609) (-7163.869) [-7155.576] (-7227.692) -- 0:56:23
307000 -- (-7211.673) (-7177.056) (-7233.915) [-7168.844] * (-7193.683) [-7178.583] (-7191.445) (-7203.261) -- 0:56:19
308000 -- [-7172.801] (-7157.670) (-7230.880) (-7178.555) * (-7181.079) [-7164.889] (-7193.161) (-7197.876) -- 0:56:12
309000 -- (-7195.969) [-7163.287] (-7220.236) (-7195.775) * (-7191.853) (-7173.421) [-7158.547] (-7194.296) -- 0:56:07
310000 -- [-7177.040] (-7174.379) (-7222.201) (-7189.357) * (-7176.501) [-7156.404] (-7168.508) (-7232.461) -- 0:56:03
Average standard deviation of split frequencies: 0.017613
311000 -- (-7215.508) [-7162.719] (-7202.230) (-7194.725) * (-7185.041) [-7147.258] (-7187.949) (-7228.163) -- 0:55:58
312000 -- (-7194.293) [-7173.397] (-7220.205) (-7183.727) * (-7193.612) [-7166.986] (-7193.247) (-7217.489) -- 0:55:54
313000 -- (-7189.953) [-7154.907] (-7192.353) (-7206.534) * (-7209.696) [-7179.834] (-7226.444) (-7178.324) -- 0:55:49
314000 -- (-7178.900) [-7153.445] (-7211.793) (-7208.076) * (-7223.775) (-7172.603) (-7213.231) [-7169.260] -- 0:55:44
315000 -- (-7181.132) [-7159.654] (-7208.167) (-7192.399) * (-7224.129) [-7162.027] (-7200.048) (-7170.613) -- 0:55:40
Average standard deviation of split frequencies: 0.017199
316000 -- (-7191.021) [-7165.641] (-7183.055) (-7198.871) * (-7236.461) (-7180.881) (-7195.205) [-7190.343] -- 0:55:35
317000 -- (-7191.386) (-7179.887) [-7169.094] (-7193.430) * (-7220.341) [-7165.108] (-7183.751) (-7213.161) -- 0:55:30
318000 -- [-7164.532] (-7168.560) (-7188.660) (-7218.796) * (-7199.960) [-7174.821] (-7172.680) (-7204.617) -- 0:55:26
319000 -- (-7187.052) [-7174.672] (-7207.920) (-7224.362) * (-7191.330) [-7165.053] (-7186.604) (-7212.855) -- 0:55:21
320000 -- [-7156.309] (-7176.358) (-7201.429) (-7203.255) * (-7192.641) [-7162.873] (-7186.712) (-7210.518) -- 0:55:17
Average standard deviation of split frequencies: 0.017172
321000 -- (-7162.928) [-7152.805] (-7211.131) (-7192.602) * (-7214.527) [-7157.603] (-7177.092) (-7190.644) -- 0:55:12
322000 -- (-7168.838) [-7171.503] (-7203.104) (-7206.577) * (-7216.885) [-7152.173] (-7191.740) (-7179.124) -- 0:55:07
323000 -- (-7169.335) [-7170.430] (-7206.584) (-7211.409) * (-7207.195) [-7165.494] (-7170.492) (-7182.490) -- 0:55:03
324000 -- (-7170.585) [-7163.191] (-7201.526) (-7233.976) * (-7199.369) [-7181.083] (-7203.140) (-7185.244) -- 0:54:58
325000 -- (-7170.745) [-7155.613] (-7231.945) (-7204.609) * (-7206.481) (-7187.836) (-7215.511) [-7159.414] -- 0:54:54
Average standard deviation of split frequencies: 0.017205
326000 -- (-7184.492) [-7156.337] (-7219.003) (-7218.651) * (-7201.173) (-7161.255) (-7218.720) [-7163.404] -- 0:54:49
327000 -- [-7190.932] (-7189.947) (-7235.183) (-7215.098) * (-7187.900) (-7158.897) (-7212.864) [-7154.611] -- 0:54:44
328000 -- (-7195.104) [-7183.093] (-7253.056) (-7215.935) * [-7182.789] (-7197.967) (-7190.888) (-7170.860) -- 0:54:40
329000 -- (-7192.140) [-7172.892] (-7205.924) (-7224.061) * [-7164.915] (-7200.214) (-7206.564) (-7187.293) -- 0:54:35
330000 -- (-7206.075) [-7176.117] (-7202.383) (-7221.993) * (-7161.136) (-7211.006) (-7204.803) [-7169.825] -- 0:54:30
Average standard deviation of split frequencies: 0.016889
331000 -- (-7198.779) [-7173.384] (-7207.212) (-7250.368) * [-7155.163] (-7203.487) (-7205.818) (-7177.390) -- 0:54:26
332000 -- (-7189.836) (-7188.027) [-7189.549] (-7226.652) * [-7156.992] (-7186.397) (-7203.316) (-7194.736) -- 0:54:21
333000 -- (-7177.626) (-7191.699) [-7175.740] (-7218.354) * (-7166.436) [-7172.645] (-7214.381) (-7212.297) -- 0:54:16
334000 -- (-7161.801) (-7192.820) [-7175.413] (-7233.018) * (-7188.849) [-7183.338] (-7195.851) (-7211.132) -- 0:54:12
335000 -- (-7155.823) (-7223.537) [-7167.805] (-7232.076) * [-7170.929] (-7185.123) (-7189.940) (-7192.258) -- 0:54:07
Average standard deviation of split frequencies: 0.016709
336000 -- (-7184.209) (-7183.950) [-7170.943] (-7209.546) * (-7181.196) (-7191.618) (-7228.541) [-7178.264] -- 0:54:02
337000 -- (-7204.112) (-7166.650) [-7161.447] (-7213.359) * [-7171.736] (-7190.344) (-7254.975) (-7205.609) -- 0:53:58
338000 -- (-7209.904) (-7185.825) [-7158.591] (-7189.519) * (-7169.197) [-7180.196] (-7222.377) (-7215.594) -- 0:53:53
339000 -- (-7189.524) (-7178.441) [-7161.136] (-7204.146) * (-7166.816) [-7199.237] (-7212.632) (-7219.918) -- 0:53:48
340000 -- (-7210.650) (-7183.775) [-7176.901] (-7192.555) * [-7175.930] (-7203.757) (-7201.944) (-7205.695) -- 0:53:44
Average standard deviation of split frequencies: 0.016801
341000 -- (-7191.378) (-7171.387) [-7172.082] (-7196.423) * [-7173.887] (-7203.346) (-7229.541) (-7191.408) -- 0:53:39
342000 -- (-7219.785) [-7174.885] (-7180.585) (-7213.723) * [-7179.855] (-7202.629) (-7222.022) (-7199.136) -- 0:53:34
343000 -- (-7202.940) (-7181.226) [-7171.323] (-7232.421) * (-7183.554) (-7207.095) (-7242.347) [-7187.117] -- 0:53:30
344000 -- (-7188.039) (-7192.399) [-7173.347] (-7206.967) * [-7162.367] (-7207.247) (-7220.248) (-7182.517) -- 0:53:25
345000 -- (-7183.240) (-7209.854) [-7164.971] (-7186.075) * [-7172.914] (-7174.796) (-7228.781) (-7179.436) -- 0:53:20
Average standard deviation of split frequencies: 0.016312
346000 -- (-7195.395) (-7214.365) [-7185.660] (-7189.760) * (-7167.735) (-7175.753) (-7214.531) [-7171.290] -- 0:53:16
347000 -- [-7176.854] (-7207.757) (-7191.717) (-7202.678) * (-7183.254) [-7161.078] (-7228.840) (-7167.465) -- 0:53:11
348000 -- (-7179.851) (-7179.667) [-7179.061] (-7229.875) * (-7170.495) [-7167.240] (-7207.575) (-7188.610) -- 0:53:06
349000 -- (-7200.694) (-7206.510) [-7172.106] (-7216.465) * [-7170.890] (-7194.346) (-7219.672) (-7165.086) -- 0:53:00
350000 -- (-7175.142) [-7173.586] (-7182.398) (-7235.399) * (-7165.926) [-7175.548] (-7202.088) (-7188.862) -- 0:52:55
Average standard deviation of split frequencies: 0.016061
351000 -- [-7185.950] (-7165.215) (-7186.720) (-7214.377) * (-7159.406) (-7164.988) (-7189.527) [-7193.880] -- 0:52:51
352000 -- (-7175.543) [-7178.901] (-7201.799) (-7211.132) * (-7155.863) [-7156.380] (-7215.679) (-7227.358) -- 0:52:46
353000 -- [-7154.259] (-7203.779) (-7228.254) (-7201.930) * [-7161.995] (-7178.435) (-7195.629) (-7206.064) -- 0:52:41
354000 -- [-7151.059] (-7216.853) (-7221.222) (-7188.201) * [-7168.945] (-7188.747) (-7234.497) (-7218.074) -- 0:52:37
355000 -- (-7148.856) (-7206.885) (-7237.840) [-7174.487] * [-7177.237] (-7186.955) (-7229.037) (-7239.030) -- 0:52:32
Average standard deviation of split frequencies: 0.015946
356000 -- [-7176.507] (-7208.843) (-7210.583) (-7186.252) * [-7175.875] (-7171.931) (-7190.635) (-7201.992) -- 0:52:27
357000 -- [-7164.218] (-7214.659) (-7222.444) (-7178.409) * (-7209.214) [-7167.012] (-7171.049) (-7207.826) -- 0:52:22
358000 -- (-7176.289) (-7218.160) (-7191.882) [-7189.308] * (-7228.627) (-7156.333) [-7150.501] (-7201.095) -- 0:52:18
359000 -- (-7168.234) (-7224.212) (-7193.211) [-7167.330] * (-7203.551) (-7160.319) [-7138.089] (-7190.657) -- 0:52:11
360000 -- (-7185.595) (-7228.601) (-7188.948) [-7170.141] * (-7221.647) (-7176.373) [-7148.715] (-7176.712) -- 0:52:07
Average standard deviation of split frequencies: 0.016237
361000 -- (-7198.658) (-7201.672) (-7197.305) [-7169.766] * (-7234.552) (-7184.149) (-7175.380) [-7173.318] -- 0:52:02
362000 -- (-7208.573) [-7174.766] (-7237.754) (-7181.275) * (-7224.409) (-7191.411) [-7160.168] (-7205.226) -- 0:51:57
363000 -- (-7214.335) [-7168.052] (-7240.813) (-7180.286) * (-7229.419) (-7190.122) [-7169.228] (-7198.704) -- 0:51:53
364000 -- (-7186.068) [-7160.957] (-7206.632) (-7211.582) * (-7224.078) (-7189.714) [-7169.434] (-7210.507) -- 0:51:48
365000 -- [-7180.911] (-7182.863) (-7214.452) (-7206.437) * (-7246.702) [-7152.450] (-7171.938) (-7190.585) -- 0:51:43
Average standard deviation of split frequencies: 0.015970
366000 -- [-7164.192] (-7171.088) (-7192.304) (-7187.036) * (-7241.210) [-7147.086] (-7205.597) (-7189.828) -- 0:51:37
367000 -- (-7174.291) [-7180.624] (-7227.501) (-7202.704) * (-7225.638) (-7160.148) (-7192.175) [-7189.253] -- 0:51:32
368000 -- (-7169.896) [-7185.669] (-7238.649) (-7162.845) * (-7206.893) (-7179.093) (-7193.333) [-7162.062] -- 0:51:27
369000 -- [-7163.892] (-7204.991) (-7240.737) (-7190.994) * (-7213.582) [-7176.743] (-7186.637) (-7153.269) -- 0:51:23
370000 -- [-7172.177] (-7210.499) (-7232.310) (-7190.411) * (-7234.793) (-7171.864) (-7188.821) [-7148.835] -- 0:51:18
Average standard deviation of split frequencies: 0.016465
371000 -- [-7173.213] (-7229.172) (-7212.308) (-7187.560) * (-7221.904) [-7166.676] (-7203.321) (-7185.191) -- 0:51:13
372000 -- [-7173.485] (-7224.939) (-7189.740) (-7185.193) * (-7240.303) [-7154.888] (-7190.875) (-7189.478) -- 0:51:09
373000 -- [-7169.567] (-7211.364) (-7184.614) (-7193.944) * (-7234.855) (-7163.466) [-7172.320] (-7218.706) -- 0:51:04
374000 -- [-7173.860] (-7204.274) (-7205.706) (-7185.358) * (-7251.797) [-7164.006] (-7189.010) (-7200.576) -- 0:50:59
375000 -- [-7159.344] (-7210.920) (-7201.276) (-7185.376) * (-7207.660) [-7170.921] (-7190.162) (-7198.047) -- 0:50:55
Average standard deviation of split frequencies: 0.016858
376000 -- (-7189.395) (-7215.239) (-7212.781) [-7177.394] * (-7197.548) (-7196.316) [-7181.473] (-7195.324) -- 0:50:50
377000 -- (-7190.047) (-7213.465) (-7208.007) [-7164.721] * (-7203.243) (-7231.805) [-7142.673] (-7179.314) -- 0:50:45
378000 -- (-7187.641) (-7212.727) (-7220.610) [-7192.064] * (-7196.347) (-7245.383) [-7169.737] (-7183.016) -- 0:50:40
379000 -- (-7211.468) [-7192.995] (-7214.973) (-7198.440) * (-7183.276) (-7224.653) [-7174.951] (-7213.771) -- 0:50:36
380000 -- (-7206.821) [-7186.138] (-7226.283) (-7196.887) * [-7192.747] (-7209.661) (-7203.315) (-7218.303) -- 0:50:31
Average standard deviation of split frequencies: 0.016958
381000 -- (-7199.830) (-7186.221) (-7261.226) [-7185.162] * [-7173.632] (-7210.048) (-7189.945) (-7222.872) -- 0:50:26
382000 -- [-7155.838] (-7199.906) (-7217.245) (-7201.589) * (-7192.722) (-7242.962) (-7200.659) [-7203.804] -- 0:50:22
383000 -- [-7163.179] (-7209.471) (-7220.070) (-7228.831) * [-7179.926] (-7239.846) (-7186.904) (-7209.872) -- 0:50:15
384000 -- (-7197.090) [-7187.359] (-7229.107) (-7212.934) * (-7202.082) (-7216.965) (-7170.862) [-7174.842] -- 0:50:11
385000 -- (-7201.379) (-7205.030) (-7227.524) [-7199.314] * (-7196.297) (-7188.271) [-7171.230] (-7185.771) -- 0:50:06
Average standard deviation of split frequencies: 0.016615
386000 -- [-7182.925] (-7215.543) (-7210.565) (-7176.341) * (-7201.811) (-7201.647) (-7184.309) [-7185.229] -- 0:50:01
387000 -- (-7198.509) (-7206.592) (-7189.287) [-7169.569] * (-7184.737) (-7216.755) [-7181.829] (-7161.794) -- 0:49:56
388000 -- (-7198.758) (-7216.927) (-7214.876) [-7165.536] * (-7190.788) (-7231.248) (-7182.509) [-7149.977] -- 0:49:52
389000 -- (-7188.866) (-7199.849) (-7218.705) [-7138.504] * (-7201.171) (-7256.974) (-7168.553) [-7171.915] -- 0:49:47
390000 -- (-7186.112) (-7229.583) (-7226.889) [-7161.134] * (-7194.607) (-7253.042) (-7153.452) [-7176.364] -- 0:49:42
Average standard deviation of split frequencies: 0.016271
391000 -- (-7178.865) (-7219.625) (-7189.160) [-7157.348] * (-7188.986) (-7242.459) [-7154.390] (-7193.830) -- 0:49:38
392000 -- (-7189.745) (-7225.244) (-7200.586) [-7155.827] * (-7189.600) (-7216.066) [-7164.715] (-7193.428) -- 0:49:33
393000 -- (-7191.808) (-7234.310) (-7180.132) [-7157.399] * (-7186.137) (-7218.514) (-7191.496) [-7182.132] -- 0:49:28
394000 -- (-7193.617) (-7235.376) (-7188.849) [-7172.825] * (-7175.054) (-7241.847) (-7177.787) [-7153.739] -- 0:49:23
395000 -- (-7205.271) (-7225.885) (-7195.587) [-7174.074] * [-7175.076] (-7222.919) (-7186.651) (-7174.707) -- 0:49:19
Average standard deviation of split frequencies: 0.016456
396000 -- (-7185.720) (-7238.198) (-7210.338) [-7181.201] * (-7182.400) [-7192.945] (-7200.841) (-7187.994) -- 0:49:14
397000 -- (-7199.244) (-7210.287) (-7190.886) [-7184.162] * [-7169.801] (-7180.926) (-7201.531) (-7179.370) -- 0:49:09
398000 -- (-7213.181) (-7214.427) (-7185.130) [-7171.583] * [-7187.905] (-7216.630) (-7191.257) (-7188.170) -- 0:49:04
399000 -- (-7209.098) (-7193.719) [-7150.308] (-7192.331) * [-7186.957] (-7229.684) (-7191.096) (-7201.948) -- 0:49:01
400000 -- (-7201.372) (-7226.330) [-7168.640] (-7193.098) * [-7195.145] (-7242.146) (-7195.558) (-7199.814) -- 0:48:57
Average standard deviation of split frequencies: 0.016687
401000 -- (-7194.766) [-7189.323] (-7177.623) (-7189.523) * [-7176.184] (-7211.960) (-7197.869) (-7223.017) -- 0:48:50
402000 -- [-7171.147] (-7180.233) (-7174.035) (-7210.778) * [-7163.628] (-7223.520) (-7199.116) (-7208.784) -- 0:48:47
403000 -- [-7178.016] (-7191.692) (-7179.005) (-7205.222) * [-7169.178] (-7191.304) (-7205.002) (-7214.516) -- 0:48:42
404000 -- (-7199.683) (-7214.435) (-7192.524) [-7184.381] * [-7160.533] (-7223.174) (-7197.845) (-7187.289) -- 0:48:38
405000 -- (-7226.173) (-7223.115) [-7177.232] (-7197.767) * [-7154.946] (-7226.616) (-7194.356) (-7197.705) -- 0:48:33
Average standard deviation of split frequencies: 0.016721
406000 -- (-7208.467) (-7179.431) [-7173.498] (-7193.359) * [-7161.322] (-7199.586) (-7210.410) (-7184.768) -- 0:48:28
407000 -- (-7204.175) [-7165.242] (-7167.372) (-7204.605) * [-7149.638] (-7189.697) (-7206.524) (-7184.663) -- 0:48:23
408000 -- (-7184.069) (-7180.590) [-7157.690] (-7221.168) * [-7155.013] (-7208.862) (-7222.606) (-7175.304) -- 0:48:19
409000 -- (-7197.885) [-7175.007] (-7174.860) (-7224.578) * [-7154.419] (-7187.466) (-7216.522) (-7163.646) -- 0:48:12
410000 -- (-7201.558) (-7174.846) [-7161.461] (-7235.572) * [-7163.595] (-7174.409) (-7215.333) (-7193.128) -- 0:48:08
Average standard deviation of split frequencies: 0.016696
411000 -- (-7208.801) (-7184.524) [-7169.391] (-7233.376) * [-7152.853] (-7196.632) (-7216.297) (-7195.110) -- 0:48:03
412000 -- (-7212.620) [-7156.969] (-7184.312) (-7245.422) * [-7138.828] (-7178.906) (-7219.176) (-7206.862) -- 0:47:58
413000 -- (-7184.739) (-7186.243) [-7172.455] (-7225.174) * [-7155.690] (-7187.512) (-7200.942) (-7204.939) -- 0:47:53
414000 -- (-7211.207) (-7189.091) [-7154.491] (-7213.856) * [-7165.947] (-7209.554) (-7189.696) (-7208.913) -- 0:47:49
415000 -- (-7213.290) (-7207.810) [-7170.259] (-7222.507) * (-7181.692) (-7202.020) [-7165.681] (-7222.560) -- 0:47:44
Average standard deviation of split frequencies: 0.016528
416000 -- [-7160.595] (-7193.696) (-7204.004) (-7202.835) * [-7178.448] (-7199.183) (-7176.128) (-7196.237) -- 0:47:39
417000 -- (-7164.333) (-7211.433) [-7165.171] (-7230.665) * (-7194.512) (-7208.089) [-7162.476] (-7187.224) -- 0:47:36
418000 -- (-7163.927) (-7211.095) [-7157.145] (-7213.984) * (-7211.588) (-7252.565) [-7167.116] (-7194.681) -- 0:47:31
419000 -- [-7182.270] (-7236.992) (-7164.826) (-7250.304) * (-7202.740) (-7236.273) [-7174.587] (-7204.615) -- 0:47:26
420000 -- (-7194.189) (-7217.927) [-7152.748] (-7239.447) * (-7186.487) (-7228.531) [-7168.013] (-7199.318) -- 0:47:22
Average standard deviation of split frequencies: 0.016243
421000 -- (-7184.105) (-7192.979) [-7155.097] (-7241.361) * (-7197.717) (-7223.070) [-7173.117] (-7199.820) -- 0:47:17
422000 -- (-7193.321) [-7182.797] (-7163.093) (-7221.722) * (-7201.405) (-7244.557) [-7154.746] (-7215.361) -- 0:47:12
423000 -- (-7189.213) (-7173.390) [-7164.455] (-7205.816) * (-7209.228) (-7239.352) [-7161.082] (-7202.852) -- 0:47:07
424000 -- [-7170.373] (-7199.214) (-7157.748) (-7223.537) * (-7223.773) (-7202.120) (-7170.713) [-7188.687] -- 0:47:01
425000 -- (-7169.586) (-7217.665) [-7157.108] (-7218.081) * (-7217.565) [-7193.056] (-7174.191) (-7212.559) -- 0:46:56
Average standard deviation of split frequencies: 0.016339
426000 -- (-7170.586) (-7231.817) [-7170.268] (-7218.629) * (-7207.906) (-7198.994) [-7161.130] (-7220.091) -- 0:46:52
427000 -- [-7160.161] (-7220.376) (-7174.536) (-7213.910) * (-7199.127) (-7178.270) [-7157.240] (-7222.035) -- 0:46:47
428000 -- [-7180.223] (-7224.989) (-7180.710) (-7201.232) * (-7179.025) (-7173.269) [-7165.973] (-7222.002) -- 0:46:42
429000 -- (-7187.747) (-7244.043) (-7171.549) [-7182.738] * (-7190.183) [-7165.195] (-7207.882) (-7214.529) -- 0:46:37
430000 -- [-7180.395] (-7235.346) (-7155.074) (-7179.269) * (-7182.260) (-7194.556) [-7192.548] (-7221.453) -- 0:46:33
Average standard deviation of split frequencies: 0.016321
431000 -- [-7176.781] (-7219.036) (-7184.477) (-7197.075) * [-7178.570] (-7194.058) (-7185.556) (-7229.390) -- 0:46:28
432000 -- [-7173.376] (-7185.974) (-7195.515) (-7204.339) * [-7180.055] (-7190.016) (-7186.274) (-7220.352) -- 0:46:23
433000 -- [-7180.864] (-7232.580) (-7198.112) (-7232.844) * (-7182.709) [-7172.334] (-7196.668) (-7235.609) -- 0:46:18
434000 -- [-7186.715] (-7262.594) (-7181.357) (-7206.434) * (-7192.756) [-7176.786] (-7208.441) (-7205.236) -- 0:46:13
435000 -- (-7181.127) (-7221.286) [-7183.226] (-7215.966) * (-7178.851) [-7175.787] (-7177.353) (-7204.807) -- 0:46:09
Average standard deviation of split frequencies: 0.016127
436000 -- [-7173.270] (-7208.134) (-7189.708) (-7214.566) * [-7172.588] (-7190.429) (-7174.112) (-7186.153) -- 0:46:04
437000 -- [-7159.227] (-7202.441) (-7175.727) (-7205.519) * [-7169.743] (-7203.432) (-7198.163) (-7200.696) -- 0:45:59
438000 -- (-7188.773) (-7216.837) [-7154.905] (-7190.844) * [-7171.219] (-7209.535) (-7187.123) (-7218.900) -- 0:45:54
439000 -- (-7226.150) (-7209.636) [-7178.257] (-7182.030) * (-7178.810) (-7194.223) [-7182.287] (-7229.673) -- 0:45:50
440000 -- (-7175.269) (-7216.518) [-7155.985] (-7178.846) * [-7176.198] (-7203.212) (-7200.343) (-7238.801) -- 0:45:45
Average standard deviation of split frequencies: 0.015937
441000 -- [-7166.090] (-7230.054) (-7193.117) (-7182.260) * [-7172.573] (-7196.511) (-7190.383) (-7236.879) -- 0:45:40
442000 -- [-7159.634] (-7239.334) (-7209.525) (-7186.996) * [-7174.100] (-7219.876) (-7174.633) (-7208.881) -- 0:45:35
443000 -- [-7173.188] (-7218.004) (-7208.574) (-7188.956) * (-7185.714) (-7206.979) [-7160.578] (-7213.493) -- 0:45:30
444000 -- [-7155.132] (-7220.004) (-7191.895) (-7196.976) * (-7189.750) (-7202.723) [-7156.976] (-7213.057) -- 0:45:26
445000 -- [-7160.544] (-7226.112) (-7166.460) (-7191.736) * (-7204.330) (-7191.877) [-7154.397] (-7216.120) -- 0:45:21
Average standard deviation of split frequencies: 0.015542
446000 -- (-7177.964) (-7194.408) [-7164.057] (-7193.728) * (-7216.177) (-7221.291) [-7155.738] (-7211.958) -- 0:45:16
447000 -- (-7203.882) (-7193.928) [-7164.536] (-7199.687) * (-7220.898) (-7205.465) [-7172.480] (-7221.382) -- 0:45:11
448000 -- [-7184.341] (-7220.921) (-7183.270) (-7193.414) * (-7227.411) (-7190.083) [-7173.360] (-7196.315) -- 0:45:07
449000 -- (-7198.141) (-7206.229) (-7176.886) [-7162.951] * (-7210.809) (-7197.145) (-7187.573) [-7179.294] -- 0:45:01
450000 -- (-7199.762) (-7178.921) (-7190.326) [-7165.281] * (-7219.720) (-7173.500) (-7184.037) [-7183.593] -- 0:44:56
Average standard deviation of split frequencies: 0.015441
451000 -- [-7162.649] (-7199.729) (-7219.265) (-7167.797) * (-7215.027) (-7187.358) [-7174.505] (-7177.338) -- 0:44:51
452000 -- [-7195.768] (-7205.804) (-7231.554) (-7183.177) * (-7220.658) (-7177.526) [-7166.088] (-7179.033) -- 0:44:46
453000 -- (-7200.969) (-7195.107) (-7242.349) [-7161.576] * (-7213.185) (-7196.877) (-7162.074) [-7166.949] -- 0:44:41
454000 -- (-7186.541) (-7207.266) (-7207.530) [-7173.101] * (-7217.299) (-7184.494) [-7176.291] (-7170.456) -- 0:44:37
455000 -- [-7182.559] (-7185.669) (-7193.059) (-7193.863) * (-7198.883) (-7182.072) [-7155.262] (-7185.384) -- 0:44:32
Average standard deviation of split frequencies: 0.014998
456000 -- (-7177.550) [-7168.315] (-7219.938) (-7208.376) * (-7188.271) (-7185.259) [-7161.026] (-7188.547) -- 0:44:26
457000 -- [-7175.083] (-7179.609) (-7243.732) (-7183.748) * [-7183.487] (-7201.101) (-7183.073) (-7200.485) -- 0:44:21
458000 -- (-7173.972) [-7166.136] (-7251.325) (-7205.660) * (-7185.675) [-7183.962] (-7206.837) (-7201.075) -- 0:44:16
459000 -- (-7189.209) [-7173.002] (-7217.706) (-7228.231) * (-7200.408) [-7169.466] (-7218.738) (-7193.538) -- 0:44:11
460000 -- (-7201.453) [-7159.812] (-7212.762) (-7205.360) * (-7186.412) [-7161.766] (-7199.464) (-7220.039) -- 0:44:07
Average standard deviation of split frequencies: 0.014702
461000 -- (-7201.609) [-7171.074] (-7222.361) (-7203.059) * [-7184.840] (-7165.294) (-7249.121) (-7194.587) -- 0:44:01
462000 -- (-7193.774) [-7188.978] (-7190.767) (-7192.012) * (-7196.563) [-7180.112] (-7204.932) (-7200.223) -- 0:43:56
463000 -- (-7221.703) (-7198.607) (-7220.847) [-7171.962] * (-7195.960) (-7181.005) [-7205.773] (-7213.392) -- 0:43:51
464000 -- (-7208.144) (-7189.466) (-7199.954) [-7176.339] * [-7181.324] (-7195.910) (-7202.630) (-7204.368) -- 0:43:46
465000 -- (-7228.998) [-7186.738] (-7220.887) (-7158.018) * [-7168.354] (-7200.880) (-7226.815) (-7211.193) -- 0:43:40
Average standard deviation of split frequencies: 0.014623
466000 -- (-7207.640) [-7185.080] (-7223.930) (-7163.694) * [-7156.335] (-7183.650) (-7204.937) (-7205.815) -- 0:43:36
467000 -- (-7209.280) (-7180.117) (-7204.253) [-7166.198] * (-7141.285) [-7161.669] (-7196.787) (-7222.013) -- 0:43:31
468000 -- (-7218.739) (-7173.131) (-7234.981) [-7163.347] * [-7150.464] (-7177.822) (-7201.802) (-7246.276) -- 0:43:26
469000 -- (-7224.312) (-7164.739) (-7209.400) [-7168.790] * [-7164.055] (-7207.203) (-7186.072) (-7221.269) -- 0:43:21
470000 -- (-7217.998) (-7182.086) (-7214.319) [-7179.234] * [-7171.840] (-7169.442) (-7182.685) (-7220.933) -- 0:43:17
Average standard deviation of split frequencies: 0.015082
471000 -- (-7207.817) (-7179.239) (-7223.317) [-7163.458] * [-7182.265] (-7221.727) (-7208.907) (-7193.214) -- 0:43:12
472000 -- (-7177.876) (-7200.484) (-7233.117) [-7158.485] * (-7181.817) (-7209.559) (-7203.500) [-7187.896] -- 0:43:07
473000 -- [-7159.693] (-7192.628) (-7249.652) (-7158.656) * [-7162.114] (-7228.553) (-7163.206) (-7200.602) -- 0:43:02
474000 -- (-7171.893) (-7206.117) (-7247.281) [-7161.587] * (-7171.866) (-7218.716) [-7159.826] (-7208.167) -- 0:42:56
475000 -- (-7170.828) (-7226.767) (-7248.634) [-7159.953] * [-7159.346] (-7214.293) (-7193.042) (-7216.959) -- 0:42:51
Average standard deviation of split frequencies: 0.015159
476000 -- [-7173.695] (-7205.442) (-7229.777) (-7156.863) * [-7148.433] (-7205.917) (-7227.174) (-7210.451) -- 0:42:47
477000 -- (-7174.898) (-7194.907) (-7235.265) [-7153.067] * [-7168.004] (-7224.301) (-7208.034) (-7225.442) -- 0:42:42
478000 -- (-7189.366) (-7174.358) (-7221.953) [-7179.084] * [-7168.739] (-7208.485) (-7201.865) (-7218.978) -- 0:42:37
479000 -- [-7177.961] (-7182.840) (-7210.689) (-7165.555) * [-7164.949] (-7211.916) (-7191.550) (-7214.154) -- 0:42:32
480000 -- (-7194.942) [-7177.027] (-7210.367) (-7175.679) * [-7160.485] (-7218.120) (-7200.064) (-7246.316) -- 0:42:28
Average standard deviation of split frequencies: 0.015365
481000 -- (-7204.082) (-7184.644) (-7187.811) [-7164.390] * [-7171.225] (-7211.389) (-7182.631) (-7230.628) -- 0:42:22
482000 -- (-7203.074) (-7200.830) (-7210.561) [-7165.359] * (-7159.104) (-7200.847) [-7162.723] (-7228.256) -- 0:42:17
483000 -- (-7194.813) (-7188.355) (-7201.257) [-7162.216] * [-7152.856] (-7226.270) (-7173.109) (-7217.032) -- 0:42:12
484000 -- (-7203.217) (-7207.223) (-7182.526) [-7169.953] * [-7158.226] (-7186.350) (-7182.993) (-7234.446) -- 0:42:07
485000 -- (-7193.677) (-7230.810) [-7176.306] (-7200.364) * [-7174.586] (-7215.770) (-7178.248) (-7245.647) -- 0:42:02
Average standard deviation of split frequencies: 0.015391
486000 -- (-7185.635) (-7202.544) (-7197.415) [-7172.325] * (-7164.379) [-7186.768] (-7181.726) (-7218.921) -- 0:41:57
487000 -- [-7167.236] (-7170.315) (-7190.812) (-7186.199) * [-7154.473] (-7192.489) (-7206.607) (-7191.508) -- 0:41:52
488000 -- (-7187.183) [-7168.087] (-7187.767) (-7190.013) * (-7181.943) [-7192.921] (-7209.639) (-7191.470) -- 0:41:47
489000 -- (-7231.934) (-7188.056) (-7197.265) [-7169.673] * [-7168.433] (-7197.095) (-7226.942) (-7191.539) -- 0:41:42
490000 -- (-7216.913) (-7176.834) (-7171.310) [-7165.948] * [-7157.078] (-7185.216) (-7227.310) (-7197.659) -- 0:41:37
Average standard deviation of split frequencies: 0.015089
491000 -- (-7203.654) (-7185.365) (-7177.308) [-7170.957] * [-7153.440] (-7185.191) (-7225.722) (-7189.186) -- 0:41:33
492000 -- [-7187.043] (-7221.413) (-7175.810) (-7177.648) * [-7162.067] (-7198.581) (-7216.871) (-7183.886) -- 0:41:28
493000 -- [-7161.461] (-7218.304) (-7189.789) (-7175.400) * [-7174.363] (-7185.781) (-7212.778) (-7193.579) -- 0:41:23
494000 -- [-7173.253] (-7217.968) (-7202.141) (-7217.908) * [-7179.813] (-7166.327) (-7229.027) (-7205.135) -- 0:41:17
495000 -- [-7174.843] (-7186.228) (-7231.616) (-7214.860) * (-7181.501) (-7167.098) [-7181.182] (-7236.190) -- 0:41:12
Average standard deviation of split frequencies: 0.015636
496000 -- [-7167.444] (-7200.537) (-7200.297) (-7219.089) * [-7175.511] (-7173.693) (-7196.555) (-7213.174) -- 0:41:08
497000 -- [-7168.006] (-7202.881) (-7199.588) (-7175.124) * (-7183.985) [-7164.895] (-7204.675) (-7215.038) -- 0:41:03
498000 -- [-7169.585] (-7191.790) (-7226.864) (-7187.633) * (-7186.605) [-7159.590] (-7173.789) (-7229.081) -- 0:40:58
499000 -- [-7184.707] (-7210.501) (-7222.363) (-7166.932) * (-7204.220) (-7190.119) [-7175.280] (-7217.884) -- 0:40:53
500000 -- (-7192.622) (-7226.553) (-7223.158) [-7150.838] * (-7189.146) (-7195.192) [-7178.231] (-7207.892) -- 0:40:49
Average standard deviation of split frequencies: 0.016154
501000 -- [-7177.617] (-7206.866) (-7222.564) (-7179.885) * [-7169.345] (-7219.663) (-7187.687) (-7188.861) -- 0:40:43
502000 -- [-7155.397] (-7210.018) (-7227.305) (-7196.546) * (-7174.360) (-7191.713) [-7178.562] (-7186.135) -- 0:40:38
503000 -- [-7159.131] (-7193.654) (-7254.070) (-7196.078) * (-7188.524) (-7191.624) [-7157.246] (-7187.629) -- 0:40:33
504000 -- [-7173.672] (-7202.673) (-7231.068) (-7174.751) * [-7183.650] (-7226.378) (-7169.560) (-7194.021) -- 0:40:28
505000 -- (-7189.564) (-7205.883) (-7206.051) [-7173.949] * (-7227.553) (-7240.093) (-7162.878) [-7170.971] -- 0:40:24
Average standard deviation of split frequencies: 0.016025
506000 -- [-7170.270] (-7191.943) (-7226.962) (-7187.014) * (-7200.219) (-7216.371) (-7199.853) [-7161.405] -- 0:40:19
507000 -- (-7174.568) (-7189.137) (-7219.437) [-7170.402] * (-7208.163) (-7227.906) (-7221.013) [-7181.776] -- 0:40:14
508000 -- (-7169.349) (-7203.414) (-7188.618) [-7171.267] * (-7201.194) (-7222.817) (-7222.184) [-7193.625] -- 0:40:09
509000 -- [-7165.903] (-7200.253) (-7196.217) (-7170.617) * (-7224.698) (-7188.187) (-7204.649) [-7175.889] -- 0:40:04
510000 -- [-7153.619] (-7190.911) (-7188.429) (-7178.380) * (-7210.656) [-7175.746] (-7226.969) (-7177.119) -- 0:40:00
Average standard deviation of split frequencies: 0.015703
511000 -- [-7159.402] (-7165.500) (-7203.140) (-7179.516) * (-7206.648) [-7190.431] (-7230.045) (-7182.221) -- 0:39:55
512000 -- (-7180.850) (-7168.300) (-7227.947) [-7161.103] * (-7209.344) [-7196.099] (-7193.868) (-7209.146) -- 0:39:49
513000 -- [-7165.492] (-7189.451) (-7253.604) (-7188.521) * (-7214.033) [-7182.330] (-7185.593) (-7214.920) -- 0:39:44
514000 -- [-7151.044] (-7183.793) (-7231.885) (-7185.171) * (-7222.829) [-7191.168] (-7210.270) (-7193.117) -- 0:39:39
515000 -- [-7153.459] (-7195.759) (-7250.318) (-7188.115) * (-7205.959) (-7170.645) (-7192.164) [-7170.148] -- 0:39:35
Average standard deviation of split frequencies: 0.015929
516000 -- [-7173.460] (-7207.951) (-7243.802) (-7189.243) * (-7190.724) [-7155.225] (-7178.448) (-7174.426) -- 0:39:30
517000 -- [-7183.394] (-7200.697) (-7255.413) (-7179.792) * (-7213.539) [-7159.501] (-7225.056) (-7171.002) -- 0:39:25
518000 -- (-7176.555) [-7184.045] (-7238.893) (-7169.722) * (-7203.779) [-7173.409] (-7212.795) (-7199.459) -- 0:39:19
519000 -- [-7173.759] (-7204.038) (-7225.861) (-7169.180) * (-7213.322) [-7197.539] (-7213.910) (-7180.774) -- 0:39:14
520000 -- [-7164.553] (-7208.324) (-7204.661) (-7168.475) * (-7177.324) (-7197.343) (-7208.509) [-7174.488] -- 0:39:10
Average standard deviation of split frequencies: 0.015938
521000 -- [-7157.913] (-7213.721) (-7214.012) (-7173.329) * (-7188.779) (-7214.593) [-7175.251] (-7174.617) -- 0:39:05
522000 -- (-7179.220) (-7201.104) (-7202.703) [-7171.571] * (-7207.559) (-7228.958) (-7187.169) [-7150.212] -- 0:39:00
523000 -- (-7209.067) (-7215.774) (-7191.072) [-7153.380] * (-7198.287) (-7232.252) [-7186.462] (-7150.934) -- 0:38:55
524000 -- (-7205.836) (-7227.866) (-7176.911) [-7168.558] * (-7187.017) (-7221.518) (-7189.815) [-7159.758] -- 0:38:50
525000 -- (-7192.308) (-7236.134) (-7185.030) [-7176.245] * (-7192.033) (-7235.619) (-7226.551) [-7164.293] -- 0:38:46
Average standard deviation of split frequencies: 0.015710
526000 -- (-7196.636) (-7239.702) [-7174.734] (-7186.275) * [-7194.766] (-7221.259) (-7198.497) (-7166.808) -- 0:38:41
527000 -- [-7197.198] (-7242.346) (-7189.840) (-7197.903) * (-7209.296) (-7236.732) [-7180.531] (-7182.157) -- 0:38:36
528000 -- (-7210.821) (-7240.559) (-7188.250) [-7167.515] * (-7208.507) (-7238.646) (-7170.008) [-7161.946] -- 0:38:31
529000 -- (-7197.129) (-7218.974) (-7196.460) [-7165.414] * (-7213.914) (-7210.154) [-7160.330] (-7183.060) -- 0:38:26
530000 -- (-7206.954) (-7222.242) (-7192.774) [-7145.747] * (-7209.736) (-7193.009) [-7155.313] (-7186.001) -- 0:38:22
Average standard deviation of split frequencies: 0.015586
531000 -- (-7200.819) (-7207.365) [-7181.578] (-7156.854) * (-7212.210) (-7194.968) [-7163.137] (-7187.442) -- 0:38:17
532000 -- (-7212.603) (-7226.253) (-7170.638) [-7171.051] * (-7215.927) (-7184.813) (-7189.193) [-7185.670] -- 0:38:11
533000 -- (-7200.738) (-7219.800) [-7177.718] (-7192.525) * (-7185.863) [-7185.394] (-7190.018) (-7175.144) -- 0:38:06
534000 -- (-7225.034) (-7187.092) [-7175.807] (-7196.830) * (-7169.003) (-7208.076) (-7174.364) [-7155.183] -- 0:38:02
535000 -- (-7225.750) [-7181.308] (-7184.313) (-7187.073) * (-7196.839) (-7208.242) (-7170.662) [-7162.396] -- 0:37:57
Average standard deviation of split frequencies: 0.015320
536000 -- (-7193.313) [-7179.592] (-7169.199) (-7198.793) * (-7199.635) (-7210.607) [-7187.522] (-7173.982) -- 0:37:52
537000 -- (-7216.640) [-7169.765] (-7169.043) (-7199.803) * [-7173.081] (-7192.509) (-7188.205) (-7164.599) -- 0:37:47
538000 -- (-7238.482) (-7203.020) (-7165.144) [-7177.792] * (-7177.749) (-7196.790) [-7170.860] (-7178.744) -- 0:37:41
539000 -- (-7234.196) (-7208.590) (-7181.039) [-7172.202] * (-7179.610) (-7176.321) [-7150.123] (-7227.281) -- 0:37:37
540000 -- (-7233.253) (-7207.275) (-7171.477) [-7173.335] * (-7176.416) (-7198.393) [-7163.873] (-7223.124) -- 0:37:32
Average standard deviation of split frequencies: 0.015260
541000 -- (-7228.259) (-7185.072) (-7168.595) [-7159.640] * (-7218.209) (-7234.597) (-7170.260) [-7190.445] -- 0:37:27
542000 -- (-7227.925) (-7171.631) [-7173.794] (-7164.253) * (-7209.713) (-7242.814) [-7162.376] (-7187.216) -- 0:37:22
543000 -- (-7217.865) (-7172.701) (-7197.921) [-7179.977] * (-7214.481) (-7246.570) (-7163.106) [-7177.110] -- 0:37:17
544000 -- (-7225.035) (-7175.903) (-7200.722) [-7171.861] * (-7211.858) (-7216.857) (-7166.014) [-7170.407] -- 0:37:13
545000 -- (-7248.092) (-7170.532) [-7172.839] (-7174.861) * (-7221.286) (-7216.736) [-7162.344] (-7152.989) -- 0:37:08
Average standard deviation of split frequencies: 0.015173
546000 -- (-7231.785) [-7178.968] (-7188.387) (-7190.021) * (-7210.125) (-7224.485) (-7151.688) [-7154.722] -- 0:37:03
547000 -- (-7236.453) [-7170.439] (-7188.510) (-7176.602) * (-7225.071) (-7227.586) (-7183.389) [-7146.511] -- 0:36:58
548000 -- (-7223.230) [-7189.109] (-7197.763) (-7167.910) * (-7219.055) (-7195.420) [-7174.100] (-7160.056) -- 0:36:53
549000 -- [-7204.808] (-7199.673) (-7199.901) (-7186.917) * (-7219.563) (-7197.744) [-7161.091] (-7179.391) -- 0:36:48
550000 -- [-7190.282] (-7218.140) (-7189.047) (-7194.911) * (-7197.685) (-7205.118) [-7177.968] (-7186.956) -- 0:36:44
Average standard deviation of split frequencies: 0.015341
551000 -- [-7185.392] (-7217.488) (-7189.737) (-7188.322) * (-7193.767) (-7202.665) [-7165.762] (-7177.135) -- 0:36:39
552000 -- (-7176.937) (-7186.990) [-7185.143] (-7181.881) * (-7186.423) (-7206.766) [-7162.695] (-7190.839) -- 0:36:34
553000 -- (-7175.663) (-7185.417) (-7204.019) [-7172.737] * [-7178.312] (-7188.235) (-7197.231) (-7195.235) -- 0:36:29
554000 -- (-7188.070) (-7194.113) (-7215.430) [-7174.402] * [-7162.511] (-7208.388) (-7212.065) (-7199.376) -- 0:36:24
555000 -- [-7182.069] (-7214.947) (-7206.437) (-7186.820) * (-7181.843) (-7208.124) (-7191.610) [-7181.640] -- 0:36:19
Average standard deviation of split frequencies: 0.015074
556000 -- [-7153.200] (-7210.347) (-7196.530) (-7186.869) * [-7159.417] (-7187.929) (-7226.525) (-7187.655) -- 0:36:14
557000 -- [-7169.378] (-7206.789) (-7182.493) (-7204.107) * [-7164.585] (-7188.475) (-7238.163) (-7208.923) -- 0:36:09
558000 -- [-7169.590] (-7226.101) (-7181.021) (-7204.241) * [-7168.002] (-7172.014) (-7216.980) (-7205.706) -- 0:36:04
559000 -- (-7175.221) (-7258.881) [-7175.170] (-7212.646) * [-7152.972] (-7169.702) (-7223.574) (-7202.298) -- 0:36:00
560000 -- (-7195.502) (-7249.576) (-7175.171) [-7185.690] * [-7153.186] (-7192.231) (-7236.385) (-7184.451) -- 0:35:55
Average standard deviation of split frequencies: 0.015248
561000 -- (-7176.006) (-7237.664) [-7161.456] (-7200.726) * [-7164.261] (-7170.054) (-7213.944) (-7227.595) -- 0:35:49
562000 -- (-7194.811) (-7226.993) (-7156.270) [-7187.369] * [-7163.379] (-7176.240) (-7208.670) (-7249.501) -- 0:35:44
563000 -- (-7174.448) (-7227.550) [-7157.766] (-7217.771) * (-7174.700) [-7176.069] (-7223.701) (-7215.545) -- 0:35:39
564000 -- (-7189.729) (-7219.701) [-7164.088] (-7208.026) * (-7177.013) [-7189.122] (-7215.886) (-7233.974) -- 0:35:35
565000 -- (-7201.636) (-7224.881) [-7145.111] (-7205.536) * (-7199.293) [-7186.704] (-7246.825) (-7202.429) -- 0:35:30
Average standard deviation of split frequencies: 0.015197
566000 -- (-7223.544) (-7223.875) [-7169.718] (-7192.798) * (-7219.491) [-7186.490] (-7219.983) (-7194.361) -- 0:35:25
567000 -- (-7214.669) (-7217.343) (-7169.307) [-7168.899] * (-7238.258) (-7192.238) (-7223.266) [-7198.815] -- 0:35:20
568000 -- (-7237.409) (-7211.236) [-7182.764] (-7166.334) * (-7240.355) [-7177.762] (-7222.372) (-7216.453) -- 0:35:15
569000 -- (-7233.142) (-7206.993) (-7169.440) [-7170.314] * (-7227.704) [-7183.874] (-7215.186) (-7207.053) -- 0:35:10
570000 -- (-7229.028) (-7215.450) (-7167.898) [-7189.501] * (-7199.209) [-7165.805] (-7199.777) (-7212.405) -- 0:35:05
Average standard deviation of split frequencies: 0.014895
571000 -- (-7219.429) [-7181.187] (-7160.223) (-7208.249) * (-7206.304) [-7164.134] (-7178.363) (-7212.497) -- 0:35:00
572000 -- (-7201.722) [-7182.118] (-7176.355) (-7222.835) * (-7222.902) [-7159.495] (-7190.912) (-7227.141) -- 0:34:55
573000 -- (-7213.844) [-7193.564] (-7188.988) (-7218.545) * (-7247.356) [-7159.370] (-7190.986) (-7231.544) -- 0:34:51
574000 -- (-7229.148) [-7174.147] (-7203.824) (-7213.455) * (-7223.793) [-7163.369] (-7187.957) (-7195.175) -- 0:34:46
575000 -- (-7213.887) [-7188.635] (-7197.460) (-7216.124) * (-7228.760) [-7161.436] (-7185.884) (-7193.678) -- 0:34:40
Average standard deviation of split frequencies: 0.014775
576000 -- (-7204.010) [-7177.023] (-7167.759) (-7223.109) * (-7212.589) [-7178.977] (-7186.554) (-7210.844) -- 0:34:35
577000 -- (-7217.853) (-7195.066) [-7173.206] (-7210.152) * (-7211.823) (-7198.346) [-7182.032] (-7195.795) -- 0:34:31
578000 -- (-7201.819) (-7200.943) [-7173.546] (-7221.206) * (-7244.238) (-7243.547) (-7197.971) [-7171.269] -- 0:34:26
579000 -- (-7225.677) (-7190.086) [-7185.103] (-7226.840) * (-7227.933) (-7234.963) (-7195.703) [-7157.384] -- 0:34:21
580000 -- (-7212.684) (-7199.511) [-7170.492] (-7222.248) * (-7245.609) (-7231.164) (-7200.610) [-7165.583] -- 0:34:16
Average standard deviation of split frequencies: 0.014727
581000 -- (-7194.114) (-7210.543) [-7166.422] (-7221.020) * (-7209.019) (-7214.608) (-7183.076) [-7179.418] -- 0:34:11
582000 -- (-7231.874) (-7191.332) [-7156.865] (-7211.172) * [-7182.856] (-7237.489) (-7203.155) (-7198.334) -- 0:34:06
583000 -- (-7205.447) (-7185.836) [-7167.789] (-7216.490) * (-7177.765) (-7225.792) (-7213.168) [-7183.337] -- 0:34:02
584000 -- (-7176.336) (-7193.129) [-7162.859] (-7242.174) * (-7176.175) (-7222.490) (-7188.602) [-7180.071] -- 0:33:56
585000 -- (-7169.567) (-7212.758) [-7168.777] (-7257.247) * (-7170.875) (-7208.129) (-7208.967) [-7172.490] -- 0:33:51
Average standard deviation of split frequencies: 0.014523
586000 -- (-7172.378) (-7221.906) [-7156.045] (-7237.718) * (-7176.083) (-7202.437) (-7232.566) [-7187.200] -- 0:33:46
587000 -- (-7160.723) (-7217.229) [-7162.281] (-7240.990) * [-7164.258] (-7196.572) (-7190.253) (-7173.325) -- 0:33:42
588000 -- (-7190.067) (-7204.940) [-7155.695] (-7257.875) * (-7171.702) [-7203.574] (-7200.085) (-7200.260) -- 0:33:37
589000 -- (-7188.459) (-7221.232) [-7160.868] (-7231.221) * (-7189.606) (-7206.691) (-7219.008) [-7187.323] -- 0:33:32
590000 -- (-7209.295) (-7230.984) [-7168.087] (-7191.439) * (-7177.935) (-7206.935) (-7204.352) [-7162.874] -- 0:33:26
Average standard deviation of split frequencies: 0.014446
591000 -- (-7216.032) (-7204.526) [-7163.288] (-7199.964) * (-7192.709) (-7186.364) (-7224.201) [-7160.632] -- 0:33:22
592000 -- (-7200.251) (-7205.261) [-7161.033] (-7198.949) * (-7210.679) [-7182.896] (-7229.653) (-7188.882) -- 0:33:17
593000 -- (-7186.386) (-7187.888) [-7172.198] (-7198.314) * (-7198.688) [-7164.704] (-7247.334) (-7192.869) -- 0:33:12
594000 -- (-7184.725) [-7168.939] (-7177.235) (-7221.191) * (-7185.808) [-7180.850] (-7253.036) (-7199.881) -- 0:33:07
595000 -- (-7192.434) [-7164.850] (-7183.655) (-7205.644) * (-7198.036) [-7181.034] (-7245.821) (-7177.309) -- 0:33:02
Average standard deviation of split frequencies: 0.014410
596000 -- (-7190.515) [-7169.854] (-7209.899) (-7240.304) * (-7208.743) [-7170.615] (-7216.839) (-7191.082) -- 0:32:57
597000 -- (-7206.870) [-7164.676] (-7214.186) (-7209.526) * (-7225.649) [-7181.010] (-7212.290) (-7192.793) -- 0:32:53
598000 -- (-7180.763) [-7177.523] (-7192.043) (-7208.267) * (-7209.630) [-7180.859] (-7204.590) (-7180.402) -- 0:32:47
599000 -- (-7190.971) [-7164.671] (-7216.318) (-7212.259) * [-7195.808] (-7184.115) (-7221.140) (-7175.858) -- 0:32:42
600000 -- (-7178.133) [-7167.670] (-7224.601) (-7198.279) * (-7199.130) [-7178.063] (-7231.179) (-7180.114) -- 0:32:38
Average standard deviation of split frequencies: 0.014135
601000 -- (-7189.997) [-7177.231] (-7193.130) (-7193.267) * (-7195.623) (-7195.882) (-7204.408) [-7163.856] -- 0:32:33
602000 -- (-7181.782) [-7183.178] (-7206.487) (-7189.925) * (-7207.142) (-7185.956) (-7219.060) [-7173.455] -- 0:32:28
603000 -- (-7214.133) (-7199.945) (-7203.452) [-7169.369] * (-7199.629) (-7202.725) (-7199.392) [-7168.585] -- 0:32:23
604000 -- (-7208.825) (-7170.972) (-7215.922) [-7185.502] * (-7187.819) (-7225.793) (-7187.373) [-7161.770] -- 0:32:18
605000 -- (-7197.894) [-7159.100] (-7210.842) (-7177.507) * [-7174.338] (-7198.680) (-7190.248) (-7187.107) -- 0:32:13
Average standard deviation of split frequencies: 0.014197
606000 -- (-7194.191) [-7179.669] (-7239.317) (-7197.137) * (-7195.115) [-7185.990] (-7178.295) (-7195.597) -- 0:32:09
607000 -- [-7166.596] (-7190.528) (-7216.548) (-7198.040) * (-7202.736) (-7245.388) [-7151.152] (-7179.560) -- 0:32:04
608000 -- [-7166.133] (-7177.422) (-7221.857) (-7198.539) * (-7225.245) (-7185.038) [-7158.609] (-7174.276) -- 0:31:59
609000 -- [-7151.659] (-7177.249) (-7194.517) (-7193.086) * (-7208.815) (-7185.460) [-7175.588] (-7155.538) -- 0:31:54
610000 -- [-7165.103] (-7189.978) (-7215.817) (-7201.129) * (-7209.513) (-7168.124) [-7176.211] (-7162.308) -- 0:31:49
Average standard deviation of split frequencies: 0.013974
611000 -- [-7164.839] (-7177.280) (-7234.818) (-7205.003) * (-7200.155) (-7182.945) [-7172.957] (-7168.375) -- 0:31:44
612000 -- [-7164.461] (-7182.446) (-7202.969) (-7231.580) * (-7187.560) (-7189.082) [-7171.662] (-7217.324) -- 0:31:40
613000 -- [-7171.348] (-7190.643) (-7216.613) (-7192.177) * (-7180.504) (-7184.223) [-7168.903] (-7199.984) -- 0:31:35
614000 -- [-7158.528] (-7205.635) (-7209.278) (-7177.318) * [-7174.218] (-7206.368) (-7172.566) (-7204.353) -- 0:31:30
615000 -- (-7179.500) [-7172.442] (-7211.642) (-7182.061) * (-7190.172) (-7200.123) [-7186.414] (-7219.874) -- 0:31:25
Average standard deviation of split frequencies: 0.013858
616000 -- [-7172.550] (-7205.730) (-7235.565) (-7181.258) * (-7200.273) [-7168.804] (-7180.388) (-7228.823) -- 0:31:20
617000 -- [-7188.383] (-7221.765) (-7194.041) (-7198.718) * (-7210.268) [-7162.592] (-7183.964) (-7190.215) -- 0:31:15
618000 -- [-7166.128] (-7202.134) (-7208.229) (-7201.028) * (-7258.364) [-7174.606] (-7192.533) (-7211.045) -- 0:31:11
619000 -- (-7164.226) [-7187.950] (-7241.221) (-7211.904) * (-7237.751) (-7180.260) (-7190.840) [-7175.961] -- 0:31:06
620000 -- [-7148.562] (-7185.871) (-7245.008) (-7214.507) * (-7212.377) [-7163.335] (-7198.597) (-7176.921) -- 0:31:01
Average standard deviation of split frequencies: 0.013877
621000 -- (-7167.316) [-7178.148] (-7245.354) (-7234.678) * (-7221.354) [-7143.842] (-7197.409) (-7184.019) -- 0:30:56
622000 -- [-7170.079] (-7183.256) (-7245.898) (-7230.134) * (-7226.961) [-7166.600] (-7197.446) (-7183.322) -- 0:30:51
623000 -- (-7176.539) [-7155.913] (-7234.187) (-7230.182) * (-7223.541) (-7189.412) (-7158.829) [-7155.504] -- 0:30:46
624000 -- (-7174.179) [-7168.766] (-7223.691) (-7220.127) * (-7250.789) (-7197.528) (-7178.458) [-7180.617] -- 0:30:42
625000 -- (-7186.104) [-7174.383] (-7237.012) (-7187.459) * (-7218.578) (-7208.963) [-7154.900] (-7197.063) -- 0:30:37
Average standard deviation of split frequencies: 0.013725
626000 -- (-7172.068) (-7181.079) (-7214.799) [-7163.922] * (-7176.895) (-7203.527) [-7148.457] (-7176.655) -- 0:30:32
627000 -- (-7184.624) (-7217.574) (-7201.751) [-7171.335] * [-7158.653] (-7212.495) (-7160.411) (-7205.274) -- 0:30:27
628000 -- (-7205.884) (-7203.040) (-7183.771) [-7159.439] * [-7155.951] (-7230.626) (-7171.166) (-7202.287) -- 0:30:22
629000 -- (-7205.268) (-7186.485) [-7160.847] (-7186.482) * (-7180.375) (-7213.981) [-7152.068] (-7213.326) -- 0:30:17
630000 -- (-7227.658) (-7179.818) (-7171.841) [-7176.159] * (-7175.398) (-7242.080) [-7152.370] (-7200.998) -- 0:30:13
Average standard deviation of split frequencies: 0.013612
631000 -- (-7244.416) (-7167.775) (-7190.050) [-7167.690] * (-7183.323) (-7218.698) [-7149.731] (-7196.553) -- 0:30:08
632000 -- (-7238.662) (-7196.367) (-7192.880) [-7140.605] * (-7182.622) (-7260.260) [-7145.286] (-7192.336) -- 0:30:03
633000 -- (-7216.711) (-7193.501) (-7184.600) [-7156.226] * (-7168.763) (-7231.171) [-7167.879] (-7197.153) -- 0:29:58
634000 -- (-7206.622) (-7194.735) (-7182.887) [-7166.610] * [-7167.751] (-7208.116) (-7167.795) (-7207.854) -- 0:29:53
635000 -- [-7194.845] (-7199.468) (-7188.181) (-7168.343) * [-7174.220] (-7223.843) (-7191.920) (-7207.994) -- 0:29:48
Average standard deviation of split frequencies: 0.013660
636000 -- [-7156.616] (-7210.386) (-7175.203) (-7206.638) * [-7167.930] (-7236.554) (-7225.620) (-7203.022) -- 0:29:43
637000 -- [-7175.268] (-7199.437) (-7187.586) (-7183.269) * [-7175.879] (-7240.386) (-7212.560) (-7212.717) -- 0:29:39
638000 -- [-7167.013] (-7181.441) (-7204.120) (-7188.194) * (-7178.378) (-7236.748) (-7203.093) [-7178.381] -- 0:29:34
639000 -- (-7188.455) (-7176.122) [-7180.978] (-7193.798) * (-7214.940) (-7195.398) (-7194.951) [-7166.932] -- 0:29:29
640000 -- [-7181.647] (-7180.588) (-7205.849) (-7217.966) * (-7221.948) (-7204.668) (-7206.499) [-7177.637] -- 0:29:24
Average standard deviation of split frequencies: 0.013765
641000 -- [-7157.521] (-7204.831) (-7202.809) (-7205.828) * (-7219.123) (-7198.458) [-7197.242] (-7172.621) -- 0:29:19
642000 -- (-7161.051) (-7200.299) (-7208.137) [-7180.275] * (-7233.883) (-7221.083) [-7186.608] (-7175.539) -- 0:29:14
643000 -- [-7162.143] (-7192.989) (-7238.777) (-7201.328) * (-7231.823) (-7227.351) (-7192.217) [-7147.791] -- 0:29:10
644000 -- (-7149.251) (-7212.382) (-7253.035) [-7194.009] * (-7207.673) (-7228.349) (-7199.021) [-7151.235] -- 0:29:05
645000 -- [-7140.109] (-7188.527) (-7244.454) (-7197.478) * (-7211.330) (-7213.061) (-7201.626) [-7172.014] -- 0:29:00
Average standard deviation of split frequencies: 0.013750
646000 -- (-7172.549) [-7183.320] (-7218.504) (-7187.636) * (-7193.423) (-7192.864) (-7204.917) [-7163.202] -- 0:28:55
647000 -- (-7193.987) [-7169.887] (-7240.516) (-7182.261) * [-7199.436] (-7215.429) (-7214.099) (-7181.926) -- 0:28:50
648000 -- (-7207.704) (-7175.254) (-7227.729) [-7189.835] * (-7179.425) (-7180.983) (-7218.688) [-7190.834] -- 0:28:45
649000 -- (-7230.020) (-7195.764) (-7204.846) [-7174.501] * (-7194.138) (-7186.534) (-7214.241) [-7178.416] -- 0:28:40
650000 -- (-7220.093) (-7209.584) (-7214.955) [-7163.159] * [-7176.311] (-7188.138) (-7209.534) (-7213.737) -- 0:28:36
Average standard deviation of split frequencies: 0.013560
651000 -- (-7198.450) (-7227.089) [-7170.781] (-7146.806) * [-7170.196] (-7202.823) (-7222.075) (-7180.489) -- 0:28:31
652000 -- (-7209.124) (-7220.095) [-7161.854] (-7157.019) * (-7202.457) (-7176.929) (-7226.985) [-7196.305] -- 0:28:26
653000 -- (-7235.666) (-7223.994) [-7158.615] (-7167.791) * [-7183.471] (-7174.544) (-7211.053) (-7204.177) -- 0:28:21
654000 -- (-7210.489) (-7216.165) [-7174.897] (-7176.817) * (-7174.086) [-7161.763] (-7224.975) (-7192.944) -- 0:28:16
655000 -- (-7204.050) (-7210.135) [-7171.295] (-7203.890) * [-7165.925] (-7186.414) (-7215.589) (-7207.748) -- 0:28:11
Average standard deviation of split frequencies: 0.013400
656000 -- (-7207.027) (-7198.262) (-7185.761) [-7190.964] * [-7163.601] (-7179.314) (-7225.063) (-7211.056) -- 0:28:06
657000 -- (-7187.376) (-7218.789) [-7183.851] (-7179.764) * [-7170.119] (-7182.265) (-7202.921) (-7190.670) -- 0:28:02
658000 -- (-7195.925) (-7242.499) [-7186.094] (-7172.473) * [-7167.055] (-7179.428) (-7209.090) (-7193.269) -- 0:27:57
659000 -- (-7202.582) (-7233.418) [-7180.201] (-7185.450) * [-7172.257] (-7189.661) (-7225.097) (-7205.178) -- 0:27:52
660000 -- (-7190.684) (-7264.491) [-7169.521] (-7191.397) * [-7168.250] (-7191.443) (-7213.061) (-7211.571) -- 0:27:47
Average standard deviation of split frequencies: 0.013333
661000 -- (-7184.297) (-7237.570) [-7165.248] (-7199.687) * [-7178.211] (-7202.672) (-7217.440) (-7227.685) -- 0:27:42
662000 -- (-7181.802) (-7225.063) [-7156.572] (-7183.947) * [-7166.343] (-7197.616) (-7202.840) (-7229.815) -- 0:27:37
663000 -- (-7203.145) (-7181.482) [-7153.524] (-7203.398) * [-7175.390] (-7193.913) (-7235.842) (-7247.301) -- 0:27:32
664000 -- (-7208.582) [-7200.870] (-7185.550) (-7206.109) * [-7188.593] (-7192.955) (-7211.081) (-7247.384) -- 0:27:28
665000 -- (-7201.878) [-7172.158] (-7164.960) (-7206.215) * [-7178.578] (-7195.209) (-7216.049) (-7225.420) -- 0:27:23
Average standard deviation of split frequencies: 0.013114
666000 -- (-7226.787) [-7176.138] (-7161.165) (-7215.643) * [-7164.397] (-7206.295) (-7224.746) (-7204.199) -- 0:27:18
667000 -- (-7182.504) [-7173.811] (-7171.708) (-7199.078) * (-7201.706) (-7215.502) (-7191.925) [-7178.878] -- 0:27:13
668000 -- (-7191.872) (-7177.692) [-7171.990] (-7230.116) * (-7206.168) (-7219.544) (-7196.982) [-7167.637] -- 0:27:08
669000 -- (-7211.008) (-7170.834) [-7156.180] (-7235.162) * (-7212.309) (-7199.840) [-7192.488] (-7186.622) -- 0:27:03
670000 -- (-7198.592) (-7188.642) [-7159.845] (-7253.443) * (-7204.818) [-7193.655] (-7201.762) (-7192.249) -- 0:26:58
Average standard deviation of split frequencies: 0.013206
671000 -- (-7173.335) (-7177.650) [-7175.524] (-7226.810) * (-7220.305) (-7200.165) (-7182.583) [-7195.151] -- 0:26:54
672000 -- [-7176.093] (-7170.930) (-7196.273) (-7216.385) * (-7236.448) (-7186.742) [-7186.427] (-7217.286) -- 0:26:49
673000 -- [-7195.196] (-7164.560) (-7204.698) (-7208.440) * (-7254.468) [-7148.774] (-7187.487) (-7186.026) -- 0:26:44
674000 -- [-7160.025] (-7161.888) (-7186.927) (-7246.422) * (-7220.827) [-7138.337] (-7196.857) (-7186.232) -- 0:26:39
675000 -- (-7186.470) (-7175.144) [-7180.146] (-7231.939) * (-7218.309) [-7155.637] (-7206.340) (-7171.523) -- 0:26:34
Average standard deviation of split frequencies: 0.013073
676000 -- [-7177.060] (-7174.454) (-7186.850) (-7247.235) * (-7199.166) (-7179.862) [-7172.778] (-7184.796) -- 0:26:29
677000 -- (-7202.080) [-7160.867] (-7188.713) (-7249.618) * (-7212.001) (-7187.133) [-7179.984] (-7216.685) -- 0:26:24
678000 -- (-7218.841) [-7182.266] (-7178.866) (-7237.758) * (-7211.512) (-7160.242) [-7187.787] (-7214.111) -- 0:26:20
679000 -- (-7216.987) [-7191.593] (-7180.323) (-7220.054) * (-7221.145) [-7159.486] (-7195.291) (-7228.536) -- 0:26:15
680000 -- (-7223.387) [-7185.144] (-7197.684) (-7226.308) * (-7197.219) [-7161.346] (-7188.278) (-7205.125) -- 0:26:10
Average standard deviation of split frequencies: 0.012781
681000 -- (-7191.197) (-7196.234) [-7175.375] (-7216.019) * (-7209.765) (-7181.187) [-7169.670] (-7217.715) -- 0:26:05
682000 -- (-7201.557) (-7165.852) [-7185.991] (-7209.538) * (-7207.638) [-7184.383] (-7179.179) (-7212.674) -- 0:26:00
683000 -- (-7192.263) (-7154.661) [-7174.834] (-7201.299) * (-7211.826) (-7194.697) [-7165.959] (-7225.234) -- 0:25:55
684000 -- (-7193.006) (-7163.605) [-7199.029] (-7204.048) * (-7205.748) [-7166.452] (-7170.002) (-7238.845) -- 0:25:50
685000 -- (-7204.016) [-7165.338] (-7214.132) (-7207.101) * (-7228.295) (-7183.837) [-7164.452] (-7225.527) -- 0:25:46
Average standard deviation of split frequencies: 0.012665
686000 -- (-7195.756) [-7188.134] (-7201.184) (-7206.886) * (-7236.217) (-7178.672) [-7184.217] (-7211.935) -- 0:25:40
687000 -- [-7174.393] (-7173.840) (-7240.342) (-7196.184) * (-7244.878) (-7183.912) (-7191.336) [-7167.569] -- 0:25:35
688000 -- [-7177.482] (-7181.047) (-7226.815) (-7192.763) * (-7230.897) (-7179.203) (-7177.464) [-7175.490] -- 0:25:30
689000 -- [-7184.432] (-7219.297) (-7182.503) (-7209.298) * (-7233.353) (-7194.711) (-7186.524) [-7157.365] -- 0:25:26
690000 -- [-7175.130] (-7240.909) (-7190.407) (-7193.565) * (-7227.252) (-7190.727) (-7213.793) [-7173.698] -- 0:25:21
Average standard deviation of split frequencies: 0.012833
691000 -- (-7187.539) (-7218.998) (-7199.483) [-7193.784] * (-7195.030) (-7182.926) (-7221.762) [-7182.362] -- 0:25:16
692000 -- (-7207.866) (-7228.402) (-7178.655) [-7192.249] * (-7186.461) [-7159.172] (-7218.935) (-7195.019) -- 0:25:11
693000 -- (-7199.073) (-7240.310) [-7180.729] (-7184.139) * [-7168.385] (-7169.099) (-7227.619) (-7193.243) -- 0:25:06
694000 -- (-7207.080) (-7220.071) (-7178.017) [-7185.641] * [-7188.600] (-7173.002) (-7218.575) (-7207.272) -- 0:25:01
695000 -- (-7200.781) (-7213.233) [-7174.219] (-7190.727) * [-7169.471] (-7174.759) (-7218.074) (-7207.749) -- 0:24:56
Average standard deviation of split frequencies: 0.012858
696000 -- (-7224.738) (-7207.386) [-7152.107] (-7171.891) * [-7164.893] (-7178.283) (-7200.842) (-7221.802) -- 0:24:51
697000 -- (-7227.407) (-7184.974) [-7153.223] (-7169.140) * [-7171.931] (-7172.925) (-7232.202) (-7186.437) -- 0:24:46
698000 -- (-7232.752) (-7204.019) [-7166.516] (-7180.952) * (-7174.555) (-7188.834) (-7202.356) [-7165.723] -- 0:24:41
699000 -- (-7250.309) (-7186.404) (-7187.693) [-7191.195] * [-7177.838] (-7208.173) (-7209.549) (-7181.218) -- 0:24:37
700000 -- (-7210.088) (-7191.313) [-7176.121] (-7179.254) * [-7186.780] (-7204.335) (-7210.142) (-7202.719) -- 0:24:32
Average standard deviation of split frequencies: 0.013057
701000 -- (-7207.426) (-7186.444) [-7182.257] (-7202.970) * [-7183.633] (-7236.067) (-7206.683) (-7211.271) -- 0:24:27
702000 -- (-7212.338) (-7217.317) [-7171.671] (-7193.450) * [-7164.160] (-7249.932) (-7187.652) (-7208.168) -- 0:24:21
703000 -- (-7228.783) (-7225.021) [-7166.396] (-7188.346) * [-7153.448] (-7227.560) (-7178.844) (-7190.724) -- 0:24:17
704000 -- (-7206.919) (-7205.777) [-7156.973] (-7192.995) * [-7154.381] (-7198.081) (-7175.338) (-7213.335) -- 0:24:12
705000 -- (-7190.966) (-7198.725) [-7153.274] (-7200.525) * (-7174.917) (-7196.449) [-7157.332] (-7190.994) -- 0:24:07
Average standard deviation of split frequencies: 0.012844
706000 -- (-7188.465) (-7191.401) [-7150.789] (-7199.719) * (-7179.777) (-7184.167) (-7177.373) [-7179.174] -- 0:24:02
707000 -- (-7188.673) (-7172.608) (-7169.622) [-7182.160] * [-7171.718] (-7187.830) (-7191.943) (-7204.585) -- 0:23:57
708000 -- (-7187.574) (-7186.457) [-7178.353] (-7180.930) * (-7179.359) [-7166.330] (-7215.742) (-7210.499) -- 0:23:52
709000 -- (-7215.481) (-7180.790) [-7175.172] (-7176.557) * [-7179.755] (-7164.326) (-7192.956) (-7180.329) -- 0:23:47
710000 -- (-7231.547) (-7194.674) [-7168.664] (-7188.431) * (-7198.104) [-7157.762] (-7205.444) (-7189.195) -- 0:23:42
Average standard deviation of split frequencies: 0.013027
711000 -- (-7183.628) (-7195.379) [-7170.936] (-7196.245) * (-7171.545) [-7156.951] (-7207.162) (-7190.180) -- 0:23:37
712000 -- (-7181.691) (-7217.061) [-7171.208] (-7181.907) * (-7191.851) (-7197.648) (-7167.543) [-7199.585] -- 0:23:32
713000 -- (-7184.843) (-7235.454) [-7168.118] (-7182.123) * (-7190.903) (-7168.124) [-7152.471] (-7178.936) -- 0:23:28
714000 -- [-7184.294] (-7222.613) (-7184.834) (-7203.155) * (-7205.431) [-7151.250] (-7170.150) (-7194.882) -- 0:23:23
715000 -- (-7180.159) [-7174.881] (-7175.008) (-7222.683) * (-7230.729) [-7167.828] (-7180.702) (-7186.899) -- 0:23:18
Average standard deviation of split frequencies: 0.013035
716000 -- (-7199.271) [-7148.233] (-7195.371) (-7208.758) * (-7229.874) [-7165.963] (-7186.499) (-7182.506) -- 0:23:13
717000 -- (-7197.668) [-7151.137] (-7197.591) (-7208.084) * (-7222.308) (-7170.383) (-7190.404) [-7169.349] -- 0:23:08
718000 -- (-7188.882) [-7173.847] (-7184.213) (-7210.215) * (-7215.177) (-7176.852) (-7210.694) [-7181.607] -- 0:23:03
719000 -- (-7195.759) [-7169.600] (-7196.928) (-7198.395) * (-7218.811) [-7175.282] (-7233.367) (-7169.982) -- 0:22:58
720000 -- [-7182.096] (-7168.692) (-7224.571) (-7211.910) * (-7207.985) [-7180.945] (-7233.357) (-7184.991) -- 0:22:53
Average standard deviation of split frequencies: 0.013043
721000 -- (-7211.409) [-7177.323] (-7195.020) (-7190.144) * (-7216.483) [-7164.248] (-7245.914) (-7204.803) -- 0:22:48
722000 -- (-7195.704) [-7181.457] (-7212.467) (-7173.987) * (-7250.075) [-7168.437] (-7196.936) (-7231.994) -- 0:22:43
723000 -- (-7186.223) (-7197.677) (-7199.316) [-7160.711] * (-7246.747) [-7158.249] (-7198.698) (-7222.105) -- 0:22:38
724000 -- (-7179.906) (-7181.125) (-7197.431) [-7170.551] * (-7243.211) [-7161.275] (-7210.503) (-7196.275) -- 0:22:34
725000 -- (-7197.795) (-7171.120) (-7213.177) [-7175.052] * (-7212.732) [-7176.189] (-7212.767) (-7174.099) -- 0:22:29
Average standard deviation of split frequencies: 0.012831
726000 -- (-7223.065) [-7140.975] (-7198.481) (-7167.387) * (-7233.285) (-7161.362) (-7189.668) [-7181.103] -- 0:22:24
727000 -- (-7214.431) (-7175.224) (-7195.026) [-7176.022] * (-7202.011) [-7158.348] (-7179.927) (-7180.589) -- 0:22:19
728000 -- (-7207.815) [-7177.749] (-7215.645) (-7175.753) * (-7217.204) (-7151.685) [-7175.770] (-7183.342) -- 0:22:14
729000 -- (-7200.425) [-7191.288] (-7221.732) (-7195.376) * (-7184.044) [-7166.335] (-7187.581) (-7179.361) -- 0:22:09
730000 -- (-7191.818) [-7187.276] (-7211.724) (-7191.515) * (-7190.108) (-7151.333) (-7187.874) [-7156.871] -- 0:22:04
Average standard deviation of split frequencies: 0.012733
731000 -- (-7198.240) [-7173.841] (-7235.616) (-7199.670) * (-7188.717) (-7156.708) (-7206.297) [-7160.952] -- 0:21:59
732000 -- (-7196.004) [-7173.297] (-7237.089) (-7189.889) * (-7181.708) [-7190.207] (-7217.415) (-7175.995) -- 0:21:54
733000 -- (-7195.706) [-7163.993] (-7210.286) (-7203.810) * (-7215.167) [-7184.324] (-7208.750) (-7182.261) -- 0:21:49
734000 -- (-7182.735) [-7154.796] (-7200.892) (-7195.512) * (-7198.823) (-7195.815) (-7214.191) [-7172.129] -- 0:21:44
735000 -- (-7183.891) (-7170.862) (-7229.624) [-7183.260] * [-7180.637] (-7201.568) (-7222.293) (-7176.665) -- 0:21:40
Average standard deviation of split frequencies: 0.012410
736000 -- (-7196.358) [-7167.816] (-7208.249) (-7187.581) * (-7178.252) (-7219.408) (-7227.973) [-7161.026] -- 0:21:35
737000 -- (-7202.866) [-7167.798] (-7230.831) (-7190.684) * (-7185.512) (-7207.465) (-7233.983) [-7177.199] -- 0:21:30
738000 -- (-7210.477) [-7170.984] (-7206.583) (-7216.635) * (-7189.798) (-7200.387) (-7214.096) [-7169.702] -- 0:21:25
739000 -- (-7199.140) [-7168.419] (-7203.996) (-7222.232) * (-7189.396) (-7201.679) (-7238.442) [-7171.226] -- 0:21:20
740000 -- (-7209.542) [-7160.193] (-7189.032) (-7232.131) * (-7201.478) (-7222.554) (-7258.110) [-7152.911] -- 0:21:15
Average standard deviation of split frequencies: 0.012278
741000 -- [-7173.576] (-7173.534) (-7234.450) (-7208.789) * (-7211.942) (-7211.512) (-7258.097) [-7153.824] -- 0:21:10
742000 -- [-7161.913] (-7164.222) (-7242.075) (-7197.255) * (-7222.181) [-7180.467] (-7212.125) (-7168.838) -- 0:21:06
743000 -- (-7177.167) [-7153.850] (-7235.950) (-7196.797) * (-7242.716) (-7170.542) (-7212.367) [-7171.934] -- 0:21:00
744000 -- (-7182.097) [-7160.681] (-7222.256) (-7193.370) * (-7216.714) (-7178.086) (-7224.892) [-7175.036] -- 0:20:55
745000 -- [-7169.180] (-7175.739) (-7239.205) (-7170.043) * (-7198.486) (-7185.953) (-7203.672) [-7171.276] -- 0:20:51
Average standard deviation of split frequencies: 0.012381
746000 -- (-7177.457) (-7183.620) (-7199.093) [-7149.861] * (-7206.121) [-7175.593] (-7210.915) (-7184.988) -- 0:20:46
747000 -- (-7173.875) (-7177.957) (-7224.352) [-7167.257] * (-7225.417) [-7172.079] (-7188.391) (-7186.110) -- 0:20:41
748000 -- (-7193.490) (-7195.812) (-7207.294) [-7157.423] * (-7223.045) (-7176.605) [-7169.531] (-7187.904) -- 0:20:36
749000 -- (-7204.623) (-7178.582) (-7205.244) [-7167.114] * (-7242.481) (-7218.130) [-7159.954] (-7195.457) -- 0:20:31
750000 -- (-7174.959) (-7184.729) (-7229.169) [-7168.559] * (-7242.906) (-7200.411) (-7172.201) [-7171.096] -- 0:20:26
Average standard deviation of split frequencies: 0.012425
751000 -- (-7173.805) (-7192.393) (-7233.656) [-7177.780] * (-7220.669) (-7223.173) [-7178.386] (-7171.537) -- 0:20:21
752000 -- [-7172.671] (-7167.842) (-7224.379) (-7174.590) * (-7196.319) (-7200.382) (-7161.565) [-7155.858] -- 0:20:16
753000 -- [-7180.584] (-7170.569) (-7240.366) (-7178.493) * (-7214.802) (-7186.118) (-7171.188) [-7138.643] -- 0:20:12
754000 -- (-7185.813) (-7174.025) (-7249.145) [-7187.020] * (-7208.630) (-7187.744) (-7204.389) [-7164.049] -- 0:20:06
755000 -- (-7202.732) (-7178.050) (-7242.934) [-7168.392] * (-7206.007) (-7175.064) (-7171.213) [-7153.458] -- 0:20:01
Average standard deviation of split frequencies: 0.012430
756000 -- (-7208.382) (-7188.774) (-7230.486) [-7151.147] * (-7232.228) (-7188.154) (-7176.133) [-7169.765] -- 0:19:57
757000 -- (-7221.535) (-7181.536) (-7215.476) [-7174.904] * (-7222.558) (-7188.494) [-7171.804] (-7185.502) -- 0:19:52
758000 -- (-7203.424) [-7152.626] (-7200.526) (-7170.681) * (-7236.771) (-7182.117) [-7152.398] (-7188.151) -- 0:19:47
759000 -- (-7202.725) (-7169.498) (-7204.614) [-7168.412] * (-7226.603) (-7186.031) [-7173.941] (-7170.660) -- 0:19:42
760000 -- (-7216.609) (-7200.943) (-7239.640) [-7161.301] * (-7234.604) (-7201.848) [-7164.321] (-7160.293) -- 0:19:37
Average standard deviation of split frequencies: 0.012240
761000 -- (-7213.207) [-7170.858] (-7231.728) (-7186.591) * (-7209.443) (-7197.237) [-7159.041] (-7200.649) -- 0:19:32
762000 -- (-7235.969) [-7167.089] (-7212.835) (-7185.152) * [-7188.507] (-7200.643) (-7190.431) (-7216.082) -- 0:19:27
763000 -- (-7240.127) [-7148.635] (-7205.470) (-7181.475) * [-7179.604] (-7196.259) (-7231.062) (-7211.923) -- 0:19:22
764000 -- (-7232.825) (-7175.159) (-7206.135) [-7178.701] * [-7189.530] (-7185.733) (-7221.328) (-7188.274) -- 0:19:17
765000 -- (-7223.967) [-7180.357] (-7193.318) (-7173.429) * [-7179.799] (-7241.134) (-7193.593) (-7191.890) -- 0:19:12
Average standard deviation of split frequencies: 0.012137
766000 -- (-7230.756) [-7160.565] (-7202.506) (-7175.294) * [-7170.396] (-7179.493) (-7193.835) (-7193.920) -- 0:19:08
767000 -- (-7243.887) (-7170.802) (-7202.804) [-7173.695] * [-7169.186] (-7168.401) (-7209.609) (-7188.350) -- 0:19:03
768000 -- (-7205.272) [-7186.045] (-7230.305) (-7164.730) * [-7153.845] (-7163.356) (-7186.620) (-7200.000) -- 0:18:58
769000 -- (-7200.539) (-7167.698) (-7193.760) [-7173.220] * [-7146.782] (-7162.513) (-7185.612) (-7186.082) -- 0:18:53
770000 -- (-7199.006) (-7189.620) [-7191.089] (-7199.838) * [-7159.035] (-7157.935) (-7197.892) (-7216.855) -- 0:18:48
Average standard deviation of split frequencies: 0.012156
771000 -- (-7200.892) (-7185.987) (-7181.967) [-7173.596] * [-7171.330] (-7164.379) (-7183.522) (-7228.573) -- 0:18:43
772000 -- (-7225.862) [-7182.203] (-7198.878) (-7171.918) * (-7173.851) (-7182.138) [-7169.394] (-7241.584) -- 0:18:38
773000 -- (-7207.871) (-7171.894) (-7198.489) [-7177.516] * [-7157.933] (-7180.282) (-7166.219) (-7234.487) -- 0:18:33
774000 -- (-7210.079) (-7188.166) [-7190.843] (-7201.059) * [-7174.167] (-7173.669) (-7197.058) (-7222.133) -- 0:18:28
775000 -- (-7210.565) [-7175.877] (-7194.406) (-7193.660) * [-7172.541] (-7167.173) (-7187.213) (-7216.572) -- 0:18:23
Average standard deviation of split frequencies: 0.012126
776000 -- (-7194.894) [-7183.005] (-7179.172) (-7190.929) * [-7170.593] (-7179.801) (-7188.477) (-7205.581) -- 0:18:18
777000 -- [-7188.156] (-7205.680) (-7184.791) (-7197.090) * (-7187.895) [-7166.866] (-7184.032) (-7219.008) -- 0:18:14
778000 -- (-7210.405) (-7217.996) (-7207.540) [-7180.653] * (-7205.144) [-7181.696] (-7201.385) (-7228.270) -- 0:18:09
779000 -- [-7168.272] (-7211.124) (-7208.069) (-7178.735) * (-7209.640) [-7167.504] (-7194.074) (-7211.215) -- 0:18:04
780000 -- (-7194.071) (-7200.257) (-7230.263) [-7186.089] * (-7200.858) [-7174.035] (-7205.020) (-7187.872) -- 0:17:59
Average standard deviation of split frequencies: 0.012060
781000 -- (-7188.106) (-7195.536) (-7211.552) [-7165.054] * (-7180.415) [-7177.658] (-7209.301) (-7202.916) -- 0:17:54
782000 -- (-7202.345) [-7178.282] (-7229.538) (-7195.875) * (-7194.088) (-7170.421) [-7180.852] (-7233.414) -- 0:17:49
783000 -- (-7192.122) (-7176.752) (-7249.342) [-7180.725] * (-7187.893) [-7175.578] (-7196.166) (-7201.461) -- 0:17:44
784000 -- (-7190.369) (-7174.457) (-7228.562) [-7181.824] * (-7203.908) [-7184.664] (-7207.836) (-7233.829) -- 0:17:39
785000 -- (-7190.627) [-7181.368] (-7206.352) (-7192.576) * (-7191.056) [-7182.960] (-7223.955) (-7210.678) -- 0:17:35
Average standard deviation of split frequencies: 0.012145
786000 -- (-7210.882) (-7186.896) (-7210.381) [-7168.783] * (-7184.318) (-7190.871) (-7212.131) [-7180.538] -- 0:17:30
787000 -- (-7196.711) (-7179.714) (-7212.402) [-7163.969] * (-7196.554) (-7205.500) (-7205.416) [-7180.665] -- 0:17:25
788000 -- (-7209.068) (-7170.469) (-7209.585) [-7168.598] * (-7212.151) (-7195.914) (-7224.101) [-7158.835] -- 0:17:20
789000 -- (-7215.351) [-7171.213] (-7224.226) (-7167.602) * (-7227.142) (-7189.685) (-7227.316) [-7157.511] -- 0:17:15
790000 -- (-7207.747) (-7191.403) (-7216.616) [-7163.295] * (-7199.815) (-7203.880) (-7234.839) [-7158.803] -- 0:17:10
Average standard deviation of split frequencies: 0.012177
791000 -- (-7199.108) (-7185.418) (-7220.365) [-7167.905] * (-7211.466) (-7215.638) (-7195.765) [-7176.762] -- 0:17:05
792000 -- (-7194.370) (-7169.427) (-7235.281) [-7157.368] * (-7217.086) (-7171.920) (-7203.497) [-7182.631] -- 0:17:00
793000 -- (-7185.874) (-7197.717) (-7211.423) [-7151.935] * (-7214.021) (-7184.736) (-7236.061) [-7171.574] -- 0:16:55
794000 -- (-7186.824) [-7175.281] (-7218.863) (-7172.895) * (-7209.600) [-7175.462] (-7214.442) (-7157.239) -- 0:16:51
795000 -- (-7192.001) [-7147.514] (-7216.299) (-7176.612) * (-7199.132) (-7183.977) (-7210.884) [-7169.116] -- 0:16:46
Average standard deviation of split frequencies: 0.012017
796000 -- (-7201.591) [-7152.963] (-7213.157) (-7195.958) * (-7187.339) (-7189.416) (-7193.370) [-7173.165] -- 0:16:41
797000 -- (-7187.393) (-7170.626) (-7221.419) [-7191.798] * (-7191.449) [-7178.586] (-7220.047) (-7168.585) -- 0:16:36
798000 -- (-7180.252) [-7160.637] (-7203.683) (-7209.197) * (-7198.043) [-7179.791] (-7179.043) (-7202.776) -- 0:16:31
799000 -- (-7173.837) [-7152.405] (-7223.069) (-7200.035) * (-7210.169) [-7162.075] (-7194.724) (-7234.654) -- 0:16:26
800000 -- [-7187.456] (-7176.448) (-7226.098) (-7233.640) * (-7248.509) [-7169.666] (-7166.672) (-7220.401) -- 0:16:22
Average standard deviation of split frequencies: 0.011814
801000 -- [-7172.498] (-7178.290) (-7197.940) (-7211.494) * (-7232.237) [-7161.321] (-7189.763) (-7225.469) -- 0:16:17
802000 -- (-7208.911) (-7169.256) [-7191.621] (-7223.975) * (-7226.741) (-7183.558) [-7180.733] (-7213.256) -- 0:16:12
803000 -- (-7190.348) [-7179.275] (-7202.996) (-7202.160) * (-7215.547) [-7187.551] (-7190.536) (-7221.984) -- 0:16:07
804000 -- (-7206.269) (-7201.468) (-7194.700) [-7182.077] * (-7200.432) [-7175.272] (-7181.032) (-7212.221) -- 0:16:02
805000 -- (-7238.624) (-7173.754) (-7205.386) [-7187.901] * (-7197.301) [-7178.839] (-7176.578) (-7220.093) -- 0:15:57
Average standard deviation of split frequencies: 0.011733
806000 -- (-7254.257) [-7176.439] (-7176.922) (-7205.733) * [-7187.991] (-7195.073) (-7190.164) (-7197.574) -- 0:15:52
807000 -- (-7258.351) (-7174.003) [-7186.178] (-7208.669) * (-7213.516) (-7182.268) [-7183.164] (-7226.345) -- 0:15:47
808000 -- (-7245.192) [-7165.167] (-7196.762) (-7181.429) * (-7203.194) (-7214.739) [-7189.786] (-7221.094) -- 0:15:42
809000 -- (-7247.070) [-7186.998] (-7209.338) (-7192.789) * (-7198.779) (-7204.027) [-7188.303] (-7214.473) -- 0:15:37
810000 -- (-7237.259) (-7199.927) (-7186.518) [-7178.996] * (-7210.239) (-7202.029) (-7198.161) [-7176.609] -- 0:15:32
Average standard deviation of split frequencies: 0.011719
811000 -- (-7213.879) (-7228.001) [-7192.040] (-7190.058) * (-7212.706) [-7197.365] (-7204.162) (-7190.761) -- 0:15:27
812000 -- (-7260.601) (-7205.829) (-7191.210) [-7165.596] * (-7216.102) [-7182.813] (-7201.419) (-7188.819) -- 0:15:23
813000 -- (-7229.777) (-7217.712) [-7187.856] (-7190.259) * (-7227.330) [-7168.808] (-7208.749) (-7181.342) -- 0:15:18
814000 -- (-7200.908) (-7194.748) (-7196.594) [-7163.829] * (-7233.479) (-7164.755) (-7245.278) [-7176.963] -- 0:15:13
815000 -- (-7229.995) (-7202.271) (-7180.367) [-7170.821] * (-7200.987) (-7182.181) (-7196.004) [-7179.620] -- 0:15:08
Average standard deviation of split frequencies: 0.011674
816000 -- (-7196.195) (-7229.146) [-7175.621] (-7194.518) * (-7232.170) [-7166.046] (-7194.787) (-7212.864) -- 0:15:03
817000 -- (-7182.126) (-7204.921) [-7190.544] (-7242.954) * (-7232.675) (-7184.360) (-7188.786) [-7194.228] -- 0:14:58
818000 -- [-7167.989] (-7213.363) (-7203.240) (-7217.990) * (-7224.603) (-7182.156) (-7188.703) [-7201.613] -- 0:14:53
819000 -- (-7167.375) (-7201.958) [-7156.433] (-7235.575) * (-7196.498) (-7178.711) [-7189.006] (-7207.876) -- 0:14:48
820000 -- (-7199.171) (-7207.341) [-7160.637] (-7227.221) * (-7211.079) (-7182.524) [-7185.141] (-7188.917) -- 0:14:43
Average standard deviation of split frequencies: 0.011622
821000 -- (-7193.439) (-7190.874) [-7168.209] (-7211.247) * (-7228.742) (-7181.936) [-7176.272] (-7195.839) -- 0:14:39
822000 -- (-7228.744) (-7183.510) [-7166.942] (-7222.414) * (-7208.302) (-7190.314) (-7197.150) [-7170.925] -- 0:14:34
823000 -- (-7219.415) (-7201.589) [-7148.161] (-7237.835) * (-7201.318) (-7188.637) (-7186.809) [-7163.675] -- 0:14:29
824000 -- (-7203.867) (-7181.272) [-7163.256] (-7237.087) * (-7221.040) (-7191.720) [-7178.242] (-7180.982) -- 0:14:24
825000 -- (-7227.638) (-7183.332) [-7159.958] (-7213.212) * (-7217.437) (-7177.525) [-7177.184] (-7167.789) -- 0:14:19
Average standard deviation of split frequencies: 0.011511
826000 -- (-7229.936) (-7173.941) [-7165.572] (-7224.764) * (-7250.768) (-7178.434) [-7183.664] (-7172.538) -- 0:14:14
827000 -- (-7227.538) [-7173.845] (-7173.306) (-7220.274) * (-7245.162) (-7186.392) [-7192.534] (-7176.416) -- 0:14:09
828000 -- (-7221.136) (-7168.362) [-7203.674] (-7213.141) * (-7219.934) (-7196.891) (-7213.527) [-7191.358] -- 0:14:04
829000 -- (-7234.997) [-7161.615] (-7185.444) (-7207.911) * (-7221.486) (-7226.926) [-7176.731] (-7209.491) -- 0:13:59
830000 -- (-7245.341) (-7178.827) [-7186.390] (-7205.625) * (-7218.176) (-7237.566) [-7181.686] (-7203.389) -- 0:13:55
Average standard deviation of split frequencies: 0.011728
831000 -- (-7251.925) [-7154.637] (-7202.669) (-7219.230) * (-7185.177) (-7216.228) [-7187.971] (-7210.721) -- 0:13:50
832000 -- (-7233.381) [-7154.344] (-7204.391) (-7221.523) * [-7166.760] (-7210.433) (-7187.912) (-7212.299) -- 0:13:45
833000 -- (-7248.919) [-7153.280] (-7183.659) (-7206.811) * [-7178.478] (-7191.351) (-7203.378) (-7224.406) -- 0:13:40
834000 -- (-7210.687) [-7152.713] (-7219.672) (-7177.637) * (-7204.177) [-7179.154] (-7197.961) (-7205.671) -- 0:13:35
835000 -- (-7212.002) [-7178.429] (-7209.666) (-7177.760) * [-7191.601] (-7192.202) (-7225.576) (-7209.244) -- 0:13:30
Average standard deviation of split frequencies: 0.011552
836000 -- (-7225.202) [-7193.961] (-7215.360) (-7182.002) * [-7176.905] (-7199.439) (-7214.847) (-7211.474) -- 0:13:25
837000 -- (-7225.951) (-7183.872) (-7241.834) [-7169.165] * [-7165.632] (-7182.046) (-7204.791) (-7210.483) -- 0:13:20
838000 -- (-7231.563) (-7190.107) (-7271.813) [-7166.013] * (-7179.813) [-7187.753] (-7182.356) (-7210.636) -- 0:13:15
839000 -- (-7237.635) (-7181.739) (-7228.345) [-7162.799] * (-7186.583) [-7178.404] (-7210.193) (-7196.036) -- 0:13:10
840000 -- (-7223.504) [-7172.055] (-7201.812) (-7174.924) * (-7197.113) [-7162.149] (-7243.180) (-7193.397) -- 0:13:06
Average standard deviation of split frequencies: 0.011337
841000 -- (-7227.294) (-7171.537) (-7210.372) [-7171.051] * (-7178.016) [-7169.892] (-7231.959) (-7203.160) -- 0:13:01
842000 -- (-7210.265) (-7204.036) (-7209.493) [-7165.137] * (-7172.930) [-7178.317] (-7243.455) (-7204.091) -- 0:12:56
843000 -- (-7217.789) [-7183.356] (-7200.698) (-7173.021) * [-7178.044] (-7165.130) (-7212.394) (-7210.658) -- 0:12:51
844000 -- (-7222.664) (-7206.211) [-7189.733] (-7175.567) * (-7198.329) [-7149.452] (-7215.460) (-7185.793) -- 0:12:46
845000 -- (-7208.482) (-7208.040) [-7200.870] (-7158.990) * (-7222.126) (-7166.399) (-7187.811) [-7179.979] -- 0:12:41
Average standard deviation of split frequencies: 0.011268
846000 -- (-7242.180) (-7204.353) [-7162.348] (-7156.709) * (-7211.526) (-7192.101) (-7203.545) [-7153.341] -- 0:12:36
847000 -- (-7220.009) (-7194.896) [-7183.489] (-7167.918) * (-7207.154) (-7192.689) [-7182.815] (-7182.829) -- 0:12:31
848000 -- (-7210.623) (-7216.653) (-7165.260) [-7176.152] * (-7202.239) [-7167.495] (-7186.719) (-7181.640) -- 0:12:26
849000 -- (-7252.105) (-7207.143) (-7177.375) [-7185.483] * (-7215.786) (-7172.013) (-7212.046) [-7170.937] -- 0:12:22
850000 -- (-7235.520) [-7174.415] (-7225.456) (-7180.353) * (-7199.746) [-7156.197] (-7221.796) (-7186.598) -- 0:12:17
Average standard deviation of split frequencies: 0.011296
851000 -- (-7232.348) (-7183.411) (-7210.301) [-7177.014] * (-7204.685) [-7154.485] (-7206.150) (-7187.219) -- 0:12:12
852000 -- (-7234.433) [-7181.748] (-7198.759) (-7181.969) * (-7196.922) [-7158.024] (-7201.902) (-7215.988) -- 0:12:07
853000 -- (-7228.675) (-7196.119) (-7181.269) [-7167.346] * [-7181.271] (-7171.450) (-7206.936) (-7196.873) -- 0:12:02
854000 -- (-7199.681) (-7191.648) (-7220.925) [-7164.342] * [-7169.166] (-7166.345) (-7213.171) (-7225.031) -- 0:11:57
855000 -- [-7182.992] (-7202.168) (-7224.559) (-7193.481) * [-7176.298] (-7180.434) (-7210.256) (-7237.700) -- 0:11:52
Average standard deviation of split frequencies: 0.011330
856000 -- (-7194.843) (-7221.396) (-7182.710) [-7169.316] * (-7176.700) [-7168.413] (-7194.194) (-7246.095) -- 0:11:47
857000 -- (-7189.754) (-7235.633) (-7183.593) [-7162.450] * [-7201.426] (-7194.713) (-7194.323) (-7255.241) -- 0:11:42
858000 -- (-7220.781) (-7229.526) [-7162.992] (-7169.254) * (-7198.433) (-7199.727) [-7187.225] (-7224.666) -- 0:11:37
859000 -- (-7194.166) (-7224.505) [-7154.505] (-7175.661) * (-7197.621) (-7209.014) (-7196.681) [-7210.612] -- 0:11:32
860000 -- (-7187.447) (-7209.599) [-7175.331] (-7186.285) * (-7191.124) (-7234.853) [-7200.084] (-7201.217) -- 0:11:27
Average standard deviation of split frequencies: 0.011361
861000 -- (-7226.698) (-7220.541) [-7189.806] (-7181.254) * [-7197.262] (-7222.789) (-7156.064) (-7207.096) -- 0:11:23
862000 -- (-7199.281) (-7217.967) [-7167.853] (-7185.620) * (-7201.697) (-7240.013) [-7162.929] (-7198.958) -- 0:11:18
863000 -- (-7200.133) (-7227.603) (-7155.887) [-7169.643] * [-7188.688] (-7241.623) (-7163.337) (-7176.304) -- 0:11:13
864000 -- (-7217.127) (-7197.013) [-7169.875] (-7192.549) * (-7196.141) (-7217.522) [-7175.382] (-7202.594) -- 0:11:08
865000 -- (-7204.591) [-7164.620] (-7183.393) (-7201.933) * (-7199.279) (-7195.113) [-7161.781] (-7175.634) -- 0:11:03
Average standard deviation of split frequencies: 0.011274
866000 -- (-7231.393) [-7159.305] (-7199.902) (-7208.706) * (-7207.349) (-7187.192) [-7159.920] (-7202.297) -- 0:10:58
867000 -- (-7201.048) [-7171.052] (-7221.854) (-7216.105) * (-7205.620) (-7177.588) [-7171.815] (-7203.455) -- 0:10:53
868000 -- (-7207.451) [-7167.341] (-7202.840) (-7214.585) * (-7187.834) (-7181.043) [-7169.072] (-7208.991) -- 0:10:48
869000 -- (-7207.428) [-7168.550] (-7191.225) (-7212.950) * (-7248.794) (-7187.511) [-7170.949] (-7227.914) -- 0:10:43
870000 -- (-7209.919) (-7181.263) [-7174.178] (-7210.428) * (-7212.900) [-7185.795] (-7168.857) (-7193.695) -- 0:10:38
Average standard deviation of split frequencies: 0.011125
871000 -- (-7207.149) (-7203.568) [-7183.704] (-7187.274) * (-7186.768) [-7191.968] (-7202.503) (-7196.150) -- 0:10:34
872000 -- (-7198.755) [-7180.662] (-7188.883) (-7203.715) * (-7198.856) [-7171.378] (-7177.450) (-7184.997) -- 0:10:29
873000 -- (-7182.549) [-7181.792] (-7192.249) (-7204.575) * (-7193.738) [-7163.811] (-7191.820) (-7196.497) -- 0:10:24
874000 -- (-7225.358) (-7177.223) [-7162.586] (-7223.688) * (-7209.405) (-7170.569) (-7228.011) [-7166.324] -- 0:10:19
875000 -- (-7209.748) (-7172.248) [-7169.713] (-7195.843) * (-7209.451) [-7168.984] (-7229.712) (-7189.096) -- 0:10:14
Average standard deviation of split frequencies: 0.010898
876000 -- (-7200.509) [-7180.255] (-7174.520) (-7192.616) * (-7191.559) [-7171.238] (-7217.190) (-7185.254) -- 0:10:09
877000 -- (-7201.353) (-7173.078) [-7166.359] (-7201.363) * (-7197.990) (-7175.386) (-7238.183) [-7170.901] -- 0:10:04
878000 -- (-7213.364) (-7176.018) [-7159.000] (-7234.106) * (-7207.142) [-7171.160] (-7227.660) (-7177.770) -- 0:09:59
879000 -- (-7218.887) (-7180.138) [-7175.711] (-7194.777) * (-7201.226) (-7195.796) (-7218.200) [-7168.385] -- 0:09:54
880000 -- (-7209.264) (-7165.404) [-7154.564] (-7216.892) * (-7200.539) (-7218.954) (-7245.961) [-7172.962] -- 0:09:49
Average standard deviation of split frequencies: 0.010675
881000 -- (-7208.386) (-7187.994) [-7148.547] (-7193.842) * [-7158.845] (-7245.920) (-7210.683) (-7184.376) -- 0:09:44
882000 -- (-7194.955) (-7199.901) [-7155.489] (-7184.953) * [-7161.782] (-7222.524) (-7223.164) (-7185.313) -- 0:09:39
883000 -- [-7178.211] (-7198.319) (-7182.823) (-7215.360) * (-7189.548) (-7241.216) (-7206.637) [-7179.937] -- 0:09:35
884000 -- (-7176.928) (-7193.631) [-7172.153] (-7214.591) * [-7168.502] (-7208.276) (-7190.636) (-7188.009) -- 0:09:30
885000 -- [-7155.556] (-7210.310) (-7176.358) (-7194.905) * (-7201.913) [-7182.230] (-7222.409) (-7210.233) -- 0:09:25
Average standard deviation of split frequencies: 0.010656
886000 -- [-7150.709] (-7202.559) (-7186.402) (-7199.941) * (-7198.905) (-7181.261) (-7194.948) [-7184.162] -- 0:09:20
887000 -- [-7161.329] (-7186.943) (-7194.537) (-7209.888) * (-7191.613) [-7169.632] (-7196.934) (-7179.131) -- 0:09:15
888000 -- [-7160.890] (-7188.703) (-7189.368) (-7209.754) * (-7203.607) (-7195.071) (-7196.257) [-7174.418] -- 0:09:10
889000 -- [-7162.599] (-7207.931) (-7169.573) (-7208.781) * (-7186.313) [-7170.128] (-7186.814) (-7179.846) -- 0:09:05
890000 -- [-7152.488] (-7193.984) (-7201.605) (-7176.561) * (-7213.222) (-7164.790) [-7179.602] (-7197.735) -- 0:09:00
Average standard deviation of split frequencies: 0.010535
891000 -- [-7168.325] (-7205.140) (-7213.369) (-7182.274) * (-7165.427) [-7155.048] (-7191.611) (-7202.051) -- 0:08:55
892000 -- [-7163.777] (-7246.540) (-7229.580) (-7179.513) * (-7188.518) [-7167.388] (-7174.144) (-7180.129) -- 0:08:50
893000 -- (-7175.250) (-7211.015) (-7235.911) [-7171.873] * (-7222.554) (-7180.055) [-7194.838] (-7204.914) -- 0:08:46
894000 -- (-7184.376) (-7208.414) (-7200.863) [-7160.663] * (-7209.018) [-7155.738] (-7190.695) (-7190.793) -- 0:08:41
895000 -- (-7162.242) (-7191.319) (-7219.267) [-7169.278] * (-7231.516) [-7153.489] (-7186.891) (-7202.524) -- 0:08:36
Average standard deviation of split frequencies: 0.010364
896000 -- (-7156.843) [-7166.808] (-7200.397) (-7175.921) * (-7233.240) (-7165.900) [-7175.333] (-7205.995) -- 0:08:31
897000 -- [-7163.952] (-7176.249) (-7211.946) (-7184.148) * (-7222.209) (-7178.955) [-7164.179] (-7205.290) -- 0:08:26
898000 -- (-7177.705) (-7163.757) (-7203.805) [-7172.029] * (-7220.540) [-7168.441] (-7171.035) (-7211.502) -- 0:08:21
899000 -- (-7183.237) (-7175.620) (-7219.463) [-7177.157] * (-7211.768) (-7152.185) [-7183.720] (-7205.737) -- 0:08:16
900000 -- (-7188.669) [-7171.406] (-7221.647) (-7184.392) * (-7214.140) (-7150.960) [-7173.136] (-7195.214) -- 0:08:11
Average standard deviation of split frequencies: 0.010157
901000 -- (-7184.062) [-7167.554] (-7215.706) (-7219.241) * (-7196.244) [-7171.102] (-7203.805) (-7190.946) -- 0:08:06
902000 -- [-7183.669] (-7215.605) (-7242.577) (-7194.362) * (-7199.056) [-7155.640] (-7215.702) (-7196.475) -- 0:08:01
903000 -- [-7170.265] (-7176.713) (-7247.285) (-7207.752) * (-7207.711) [-7160.035] (-7217.117) (-7189.531) -- 0:07:56
904000 -- [-7166.873] (-7191.732) (-7238.010) (-7201.573) * (-7223.062) [-7159.599] (-7199.270) (-7186.166) -- 0:07:51
905000 -- [-7165.430] (-7188.619) (-7215.023) (-7183.542) * (-7209.475) [-7179.219] (-7195.956) (-7212.636) -- 0:07:47
Average standard deviation of split frequencies: 0.010004
906000 -- (-7179.572) (-7192.345) (-7221.380) [-7180.276] * (-7205.842) (-7160.484) (-7204.895) [-7183.607] -- 0:07:42
907000 -- [-7190.071] (-7201.974) (-7221.983) (-7182.418) * (-7236.942) (-7162.397) (-7179.580) [-7174.332] -- 0:07:37
908000 -- (-7201.109) (-7200.739) (-7195.877) [-7192.249] * (-7220.216) (-7188.193) (-7184.608) [-7176.918] -- 0:07:32
909000 -- (-7201.600) (-7215.983) [-7178.358] (-7220.750) * (-7200.357) (-7187.538) (-7180.238) [-7175.820] -- 0:07:27
910000 -- [-7179.781] (-7194.670) (-7193.160) (-7242.143) * [-7194.320] (-7193.582) (-7183.758) (-7206.356) -- 0:07:22
Average standard deviation of split frequencies: 0.010123
911000 -- (-7176.636) [-7174.102] (-7201.913) (-7205.550) * (-7237.736) (-7206.713) [-7160.596] (-7179.836) -- 0:07:17
912000 -- [-7147.204] (-7196.237) (-7171.865) (-7191.324) * [-7197.356] (-7201.515) (-7197.908) (-7180.520) -- 0:07:12
913000 -- [-7155.863] (-7186.600) (-7176.067) (-7179.566) * (-7227.184) (-7191.994) (-7177.530) [-7182.075] -- 0:07:07
914000 -- (-7190.100) (-7222.135) [-7165.734] (-7209.251) * (-7218.548) (-7204.832) [-7162.788] (-7208.489) -- 0:07:02
915000 -- (-7174.039) (-7225.063) [-7162.765] (-7185.809) * (-7211.823) (-7192.819) [-7179.869] (-7210.903) -- 0:06:58
Average standard deviation of split frequencies: 0.010211
916000 -- (-7192.696) (-7206.700) [-7170.162] (-7182.034) * (-7208.185) (-7210.947) [-7164.622] (-7181.678) -- 0:06:53
917000 -- [-7172.640] (-7191.814) (-7185.302) (-7183.568) * (-7215.527) (-7196.888) [-7155.666] (-7183.061) -- 0:06:48
918000 -- [-7173.358] (-7179.331) (-7218.758) (-7175.198) * (-7183.275) (-7191.133) (-7189.539) [-7171.005] -- 0:06:43
919000 -- (-7167.424) [-7142.519] (-7225.036) (-7173.431) * (-7194.929) [-7183.455] (-7207.398) (-7178.632) -- 0:06:38
920000 -- (-7194.484) [-7159.772] (-7222.833) (-7194.225) * (-7190.889) (-7189.698) (-7201.719) [-7175.790] -- 0:06:33
Average standard deviation of split frequencies: 0.010252
921000 -- (-7185.447) [-7169.087] (-7248.561) (-7196.054) * (-7192.637) [-7176.948] (-7207.247) (-7164.214) -- 0:06:28
922000 -- (-7196.171) [-7143.384] (-7196.687) (-7181.557) * (-7197.388) [-7171.791] (-7206.512) (-7168.412) -- 0:06:23
923000 -- (-7217.431) [-7153.584] (-7205.667) (-7175.821) * (-7208.680) (-7183.447) (-7221.124) [-7167.108] -- 0:06:18
924000 -- (-7202.846) (-7196.335) (-7182.665) [-7158.763] * (-7199.164) (-7181.882) (-7230.572) [-7176.505] -- 0:06:13
925000 -- (-7190.132) (-7177.757) (-7195.761) [-7185.016] * (-7208.577) [-7168.676] (-7202.101) (-7202.845) -- 0:06:08
Average standard deviation of split frequencies: 0.010190
926000 -- (-7207.498) (-7180.013) (-7203.445) [-7161.303] * (-7208.929) [-7159.311] (-7208.431) (-7200.320) -- 0:06:03
927000 -- (-7189.524) (-7182.013) (-7202.279) [-7162.646] * (-7220.821) [-7168.602] (-7211.742) (-7189.612) -- 0:05:59
928000 -- (-7166.586) (-7188.824) (-7211.483) [-7171.025] * (-7183.606) (-7180.545) (-7230.297) [-7193.409] -- 0:05:54
929000 -- (-7176.159) (-7183.829) (-7221.649) [-7166.538] * [-7172.734] (-7205.601) (-7247.016) (-7176.585) -- 0:05:49
930000 -- (-7192.992) [-7186.781] (-7209.243) (-7184.582) * [-7194.046] (-7192.157) (-7224.609) (-7206.689) -- 0:05:44
Average standard deviation of split frequencies: 0.010290
931000 -- (-7179.577) [-7189.295] (-7222.580) (-7205.257) * (-7203.945) (-7184.133) (-7224.711) [-7173.662] -- 0:05:39
932000 -- (-7186.514) [-7178.355] (-7200.295) (-7195.571) * (-7190.125) (-7196.674) (-7229.922) [-7163.106] -- 0:05:34
933000 -- (-7179.359) [-7172.995] (-7212.806) (-7198.457) * [-7171.539] (-7209.816) (-7219.742) (-7181.586) -- 0:05:29
934000 -- (-7185.438) [-7153.132] (-7197.580) (-7207.704) * (-7172.770) (-7194.503) (-7215.373) [-7173.170] -- 0:05:24
935000 -- (-7175.100) [-7162.207] (-7215.885) (-7198.569) * (-7198.365) (-7179.470) (-7196.082) [-7177.152] -- 0:05:19
Average standard deviation of split frequencies: 0.010104
936000 -- (-7190.860) [-7174.021] (-7209.653) (-7194.074) * [-7170.522] (-7218.796) (-7213.807) (-7183.715) -- 0:05:14
937000 -- (-7203.124) [-7175.391] (-7213.011) (-7203.605) * [-7171.293] (-7239.958) (-7206.136) (-7193.745) -- 0:05:09
938000 -- (-7175.626) [-7161.288] (-7211.525) (-7217.765) * [-7169.489] (-7229.317) (-7202.200) (-7202.215) -- 0:05:04
939000 -- (-7172.118) [-7164.929] (-7207.752) (-7216.167) * [-7165.816] (-7199.413) (-7210.935) (-7209.910) -- 0:05:00
940000 -- (-7189.028) [-7167.122] (-7230.950) (-7202.767) * [-7167.583] (-7199.618) (-7218.471) (-7189.943) -- 0:04:55
Average standard deviation of split frequencies: 0.010144
941000 -- (-7187.975) [-7152.226] (-7226.523) (-7206.955) * [-7179.989] (-7188.917) (-7231.852) (-7204.160) -- 0:04:50
942000 -- (-7199.973) (-7175.991) [-7183.752] (-7197.686) * (-7192.294) (-7201.995) (-7231.997) [-7161.996] -- 0:04:45
943000 -- (-7238.014) (-7183.439) [-7174.392] (-7205.057) * (-7189.475) (-7197.012) (-7236.674) [-7167.288] -- 0:04:40
944000 -- (-7223.107) [-7180.913] (-7201.406) (-7188.149) * (-7175.442) (-7204.678) (-7223.310) [-7159.953] -- 0:04:35
945000 -- (-7214.952) [-7190.396] (-7179.831) (-7210.918) * [-7170.621] (-7221.162) (-7230.305) (-7150.193) -- 0:04:30
Average standard deviation of split frequencies: 0.010090
946000 -- (-7202.401) [-7157.127] (-7193.036) (-7236.459) * (-7152.148) (-7221.186) (-7206.474) [-7162.420] -- 0:04:25
947000 -- (-7187.866) [-7182.058] (-7183.184) (-7227.654) * [-7180.861] (-7192.874) (-7221.112) (-7174.607) -- 0:04:20
948000 -- (-7208.975) [-7175.012] (-7185.481) (-7216.173) * (-7199.678) (-7191.478) (-7212.575) [-7163.259] -- 0:04:15
949000 -- [-7185.076] (-7190.467) (-7189.839) (-7234.269) * (-7197.066) (-7213.793) (-7198.919) [-7180.283] -- 0:04:10
950000 -- (-7201.405) (-7183.909) [-7176.491] (-7218.467) * (-7212.283) (-7221.620) [-7180.613] (-7159.426) -- 0:04:06
Average standard deviation of split frequencies: 0.009875
951000 -- (-7210.312) (-7190.887) [-7179.149] (-7217.862) * (-7226.150) (-7233.757) (-7180.199) [-7155.332] -- 0:04:01
952000 -- (-7212.211) (-7180.521) (-7220.649) [-7184.543] * (-7206.583) (-7230.823) (-7181.378) [-7150.176] -- 0:03:56
953000 -- (-7218.816) (-7189.396) (-7211.254) [-7167.544] * (-7208.567) (-7217.616) (-7204.989) [-7165.497] -- 0:03:51
954000 -- (-7221.903) (-7179.302) (-7205.819) [-7167.507] * (-7202.069) (-7229.701) (-7200.839) [-7165.433] -- 0:03:46
955000 -- (-7209.649) (-7167.844) (-7213.352) [-7165.176] * (-7209.886) (-7207.135) (-7214.339) [-7174.145] -- 0:03:41
Average standard deviation of split frequencies: 0.009842
956000 -- (-7229.467) (-7176.496) (-7241.868) [-7166.505] * (-7199.577) (-7208.036) (-7210.523) [-7165.379] -- 0:03:36
957000 -- (-7231.084) (-7190.542) (-7208.347) [-7175.835] * (-7184.516) (-7195.793) (-7213.324) [-7162.195] -- 0:03:31
958000 -- (-7210.480) (-7196.587) (-7182.994) [-7187.864] * (-7191.762) (-7190.565) (-7187.378) [-7168.314] -- 0:03:26
959000 -- (-7205.746) (-7208.621) [-7176.517] (-7177.569) * (-7194.172) (-7202.215) (-7193.812) [-7164.808] -- 0:03:21
960000 -- (-7194.238) (-7257.003) [-7180.430] (-7171.898) * (-7189.597) (-7187.311) (-7201.859) [-7171.757] -- 0:03:16
Average standard deviation of split frequencies: 0.009845
961000 -- (-7178.787) (-7236.371) (-7182.828) [-7169.512] * (-7183.126) (-7214.888) [-7180.789] (-7157.668) -- 0:03:11
962000 -- (-7184.318) (-7211.401) [-7170.092] (-7184.366) * (-7196.246) (-7214.189) (-7188.405) [-7166.354] -- 0:03:07
963000 -- (-7194.231) (-7209.735) [-7157.699] (-7186.282) * (-7193.554) (-7212.121) (-7198.566) [-7173.418] -- 0:03:02
964000 -- (-7211.746) (-7216.507) [-7167.411] (-7175.219) * (-7194.614) (-7193.209) (-7216.147) [-7181.150] -- 0:02:57
965000 -- (-7217.849) (-7210.670) [-7154.270] (-7193.685) * (-7190.167) [-7181.576] (-7227.332) (-7186.558) -- 0:02:52
Average standard deviation of split frequencies: 0.009629
966000 -- (-7209.219) (-7199.574) [-7152.389] (-7200.254) * (-7181.976) (-7176.548) (-7244.242) [-7166.859] -- 0:02:47
967000 -- (-7199.474) (-7206.515) [-7168.159] (-7223.450) * (-7189.466) [-7168.336] (-7222.568) (-7161.746) -- 0:02:42
968000 -- (-7191.274) (-7216.921) [-7161.313] (-7265.320) * (-7206.222) [-7161.981] (-7222.384) (-7200.626) -- 0:02:37
969000 -- (-7160.947) (-7228.793) [-7169.230] (-7242.207) * (-7218.478) [-7157.494] (-7221.685) (-7190.881) -- 0:02:32
970000 -- [-7181.770] (-7189.832) (-7168.626) (-7237.641) * (-7214.247) (-7163.869) (-7195.267) [-7179.077] -- 0:02:27
Average standard deviation of split frequencies: 0.009652
971000 -- (-7190.929) (-7219.849) [-7185.895] (-7212.646) * (-7195.233) [-7164.362] (-7185.042) (-7183.952) -- 0:02:22
972000 -- (-7179.959) (-7208.111) [-7184.769] (-7206.611) * (-7215.466) (-7180.452) (-7189.606) [-7182.507] -- 0:02:17
973000 -- (-7178.623) (-7200.479) [-7172.755] (-7219.417) * (-7182.122) (-7176.476) [-7170.181] (-7182.698) -- 0:02:12
974000 -- (-7194.182) (-7209.279) (-7156.116) [-7167.388] * (-7183.182) (-7176.327) [-7164.745] (-7168.914) -- 0:02:08
975000 -- (-7189.803) (-7247.248) [-7161.132] (-7186.185) * [-7162.152] (-7177.295) (-7183.154) (-7184.901) -- 0:02:03
Average standard deviation of split frequencies: 0.009504
976000 -- (-7163.832) (-7224.437) [-7173.761] (-7186.287) * (-7167.977) (-7166.570) [-7177.597] (-7179.218) -- 0:01:58
977000 -- (-7170.494) (-7214.427) [-7188.860] (-7212.076) * (-7174.014) (-7172.188) [-7166.031] (-7183.363) -- 0:01:53
978000 -- (-7182.946) (-7208.051) [-7176.841] (-7201.543) * (-7180.070) [-7164.596] (-7155.375) (-7189.151) -- 0:01:48
979000 -- (-7209.173) (-7212.759) [-7176.466] (-7184.858) * (-7190.536) (-7184.452) [-7182.385] (-7209.703) -- 0:01:43
980000 -- (-7200.120) (-7212.101) [-7174.503] (-7200.174) * (-7215.082) [-7175.393] (-7187.362) (-7217.837) -- 0:01:38
Average standard deviation of split frequencies: 0.009494
981000 -- (-7202.873) (-7212.129) (-7185.944) [-7179.481] * (-7210.046) (-7177.080) [-7177.437] (-7199.552) -- 0:01:33
982000 -- (-7236.456) [-7196.284] (-7188.896) (-7189.853) * (-7179.756) [-7171.712] (-7186.616) (-7197.639) -- 0:01:28
983000 -- (-7204.837) (-7185.918) (-7190.121) [-7172.945] * (-7177.897) [-7166.354] (-7190.153) (-7198.114) -- 0:01:23
984000 -- (-7206.159) (-7184.072) (-7225.696) [-7181.095] * (-7196.905) [-7155.089] (-7190.152) (-7186.540) -- 0:01:18
985000 -- (-7213.317) [-7175.122] (-7224.058) (-7205.044) * (-7201.014) (-7155.883) (-7200.961) [-7188.752] -- 0:01:13
Average standard deviation of split frequencies: 0.009511
986000 -- (-7214.049) [-7171.810] (-7214.870) (-7192.713) * (-7178.708) (-7193.434) (-7204.404) [-7170.166] -- 0:01:08
987000 -- (-7196.510) [-7164.103] (-7209.010) (-7168.301) * [-7154.771] (-7191.237) (-7187.913) (-7146.195) -- 0:01:04
988000 -- (-7224.084) [-7169.278] (-7195.076) (-7177.402) * [-7151.622] (-7207.276) (-7188.293) (-7167.520) -- 0:00:59
989000 -- (-7242.950) [-7170.091] (-7181.169) (-7182.694) * [-7171.849] (-7231.505) (-7192.724) (-7189.746) -- 0:00:54
990000 -- (-7204.883) (-7171.089) (-7207.547) [-7187.169] * [-7168.913] (-7204.167) (-7184.245) (-7192.410) -- 0:00:49
Average standard deviation of split frequencies: 0.009525
991000 -- (-7205.009) [-7154.735] (-7252.241) (-7184.659) * [-7169.572] (-7225.192) (-7199.775) (-7196.669) -- 0:00:44
992000 -- (-7194.165) [-7165.893] (-7210.196) (-7187.520) * [-7171.440] (-7217.596) (-7209.923) (-7212.008) -- 0:00:39
993000 -- (-7223.583) (-7181.060) (-7212.582) [-7188.741] * [-7154.256] (-7197.014) (-7218.606) (-7195.392) -- 0:00:34
994000 -- (-7203.488) (-7186.511) (-7210.496) [-7167.483] * [-7177.852] (-7221.901) (-7218.471) (-7179.130) -- 0:00:29
995000 -- [-7182.332] (-7178.779) (-7202.741) (-7177.686) * (-7168.706) (-7208.191) (-7229.599) [-7162.244] -- 0:00:24
Average standard deviation of split frequencies: 0.009583
996000 -- (-7207.221) [-7165.707] (-7208.373) (-7167.597) * [-7177.169] (-7220.659) (-7222.725) (-7167.539) -- 0:00:19
997000 -- (-7191.916) [-7168.121] (-7225.762) (-7185.136) * (-7195.574) (-7210.745) (-7196.971) [-7163.312] -- 0:00:14
998000 -- (-7181.516) [-7163.526] (-7224.411) (-7204.372) * (-7193.808) [-7196.837] (-7230.280) (-7191.873) -- 0:00:09
999000 -- [-7183.283] (-7165.583) (-7220.655) (-7194.953) * (-7199.162) [-7206.434] (-7247.855) (-7207.888) -- 0:00:04
1000000 -- (-7170.186) (-7178.213) (-7242.346) [-7186.619] * [-7183.418] (-7189.862) (-7217.589) (-7203.800) -- 0:00:00
Average standard deviation of split frequencies: 0.009660
Analysis completed in 1 hours 22 mins 4 seconds
Analysis used 4918.58 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -7131.07
Likelihood of best state for "cold" chain of run 2 was -7135.49
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
24.7 % ( 26 %) Dirichlet(Revmat{all})
37.8 % ( 28 %) Slider(Revmat{all})
20.6 % ( 20 %) Dirichlet(Pi{all})
25.0 % ( 26 %) Slider(Pi{all})
26.8 % ( 26 %) Multiplier(Alpha{1,2})
30.9 % ( 25 %) Multiplier(Alpha{3})
38.8 % ( 24 %) Slider(Pinvar{all})
34.0 % ( 30 %) ExtSPR(Tau{all},V{all})
23.4 % ( 26 %) ExtTBR(Tau{all},V{all})
37.2 % ( 36 %) NNI(Tau{all},V{all})
28.3 % ( 26 %) ParsSPR(Tau{all},V{all})
26.8 % ( 31 %) Multiplier(V{all})
54.0 % ( 54 %) Nodeslider(V{all})
24.1 % ( 24 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
25.2 % ( 26 %) Dirichlet(Revmat{all})
37.7 % ( 35 %) Slider(Revmat{all})
20.9 % ( 23 %) Dirichlet(Pi{all})
25.5 % ( 28 %) Slider(Pi{all})
26.4 % ( 32 %) Multiplier(Alpha{1,2})
30.6 % ( 17 %) Multiplier(Alpha{3})
38.1 % ( 29 %) Slider(Pinvar{all})
34.3 % ( 40 %) ExtSPR(Tau{all},V{all})
23.6 % ( 22 %) ExtTBR(Tau{all},V{all})
37.3 % ( 44 %) NNI(Tau{all},V{all})
28.2 % ( 34 %) ParsSPR(Tau{all},V{all})
26.9 % ( 21 %) Multiplier(V{all})
53.9 % ( 57 %) Nodeslider(V{all})
24.4 % ( 30 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.29 0.04 0.00
2 | 166174 0.29 0.05
3 | 167161 166834 0.34
4 | 166508 166374 166949
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.29 0.04 0.00
2 | 166294 0.31 0.05
3 | 166642 166820 0.36
4 | 166481 166923 166840
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -7159.72
| 2 |
| 2 1 1 |
| 1 2 |
| 2 2 1 1 |
| 1 1 1 2 12 1 |
| 2 1 1 12 21 |
| 2 2 2 2 1 1 1 2 11 212 1 1 2 2 |
| 1 1 2 2 * 21 2 2 2 2 2 * 1 |
| 1 2 2 1 *1 22 1 1 2 22 |
| 2 11 1 2 * 2 1 2 1 21 1|
| 2 1 1 1 1 1 2 * 12|
| 1 1 11 2 2 2 1 |
|* 2 2 11 2 2 |
| 2 2 1 |
| 1 2 * 2 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -7180.69
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -7139.85 -7213.63
2 -7139.52 -7203.34
--------------------------------------
TOTAL -7139.67 -7212.94
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 2.919182 0.034900 2.571979 3.304849 2.919083 986.04 1051.85 1.002
r(A<->C){all} 0.111825 0.000144 0.089491 0.136538 0.111891 607.21 709.78 1.000
r(A<->G){all} 0.275551 0.000457 0.236193 0.318907 0.274761 254.21 282.21 1.000
r(A<->T){all} 0.095713 0.000093 0.076937 0.114268 0.095188 566.33 604.96 1.000
r(C<->G){all} 0.042786 0.000080 0.025309 0.059931 0.042266 728.34 767.07 1.000
r(C<->T){all} 0.416768 0.000587 0.370283 0.463545 0.416526 230.58 297.78 1.001
r(G<->T){all} 0.057356 0.000064 0.042342 0.073243 0.057146 614.55 736.53 1.002
pi(A){all} 0.269833 0.000162 0.243026 0.292966 0.269662 432.91 460.75 1.000
pi(C){all} 0.192681 0.000116 0.172298 0.214737 0.192315 173.22 351.22 1.000
pi(G){all} 0.209800 0.000134 0.187602 0.232825 0.209982 499.73 594.93 1.001
pi(T){all} 0.327686 0.000177 0.301861 0.352926 0.327475 451.11 479.02 1.000
alpha{1,2} 0.217899 0.000590 0.174874 0.266178 0.215367 745.05 807.25 1.000
alpha{3} 1.042199 0.032997 0.670625 1.367434 1.026526 843.32 954.06 1.000
pinvar{all} 0.276978 0.001830 0.190034 0.355032 0.278811 582.64 655.22 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C52
2 -- C67
3 -- C66
4 -- C11
5 -- C68
6 -- C14
7 -- C70
8 -- C13
9 -- C16
10 -- C75
11 -- C19
12 -- C59
13 -- C18
14 -- C20
15 -- C77
16 -- C78
17 -- C76
18 -- C25
19 -- C22
20 -- C84
21 -- C83
22 -- C28
23 -- C58
24 -- C30
25 -- C86
26 -- C87
27 -- C85
28 -- C33
29 -- C35
30 -- C93
31 -- C92
32 -- C37
33 -- C94
34 -- C3
35 -- C40
36 -- C96
37 -- C39
38 -- C42
39 -- C44
40 -- C102
41 -- C101
42 -- C46
43 -- C48
44 -- C104
45 -- C60
46 -- C105
47 -- C103
48 -- C1
49 -- C49
50 -- C4
51 -- C106
52 -- C6
53 -- C56
54 -- C21
55 -- C12
56 -- C61
57 -- C36
58 -- C10
59 -- C99
60 -- C69
61 -- C23
62 -- C82
63 -- C57
64 -- C72
65 -- C55
66 -- C38
67 -- C7
68 -- C81
69 -- C91
70 -- C17
71 -- C98
72 -- C90
73 -- C27
74 -- C100
75 -- C32
76 -- C88
77 -- C2
78 -- C5
79 -- C43
80 -- C63
81 -- C54
82 -- C34
83 -- C89
84 -- C26
85 -- C47
86 -- C80
87 -- C97
88 -- C9
89 -- C8
90 -- C74
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
--------------------------------------------------------------------------------
1 -- .**********************************************************************
2 -- .*.....................................................................
3 -- ..*....................................................................
4 -- ...*...................................................................
5 -- ....*..................................................................
6 -- .....*.................................................................
7 -- ......*................................................................
8 -- .......*...............................................................
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46 -- .............................................*.........................
47 -- ..............................................*........................
48 -- ...............................................*.......................
49 -- ................................................*......................
50 -- .................................................*.....................
51 -- ..................................................*....................
52 -- ...................................................*...................
53 -- ....................................................*..................
54 -- .....................................................*.................
55 -- ......................................................*................
56 -- .......................................................*...............
57 -- ........................................................*..............
58 -- .........................................................*.............
59 -- ..........................................................*............
60 -- ...........................................................*...........
61 -- ............................................................*..........
62 -- .............................................................*.........
63 -- ..............................................................*........
64 -- ...............................................................*.......
65 -- ................................................................*......
66 -- .................................................................*.....
67 -- ..................................................................*....
68 -- ...................................................................*...
69 -- ....................................................................*..
70 -- .....................................................................*.
71 -- ......................................................................*
72 -- .......................................................................
73 -- .......................................................................
74 -- .......................................................................
75 -- .......................................................................
76 -- .......................................................................
77 -- .......................................................................
78 -- .......................................................................
79 -- .......................................................................
80 -- .......................................................................
81 -- .......................................................................
82 -- .......................................................................
83 -- .......................................................................
84 -- .......................................................................
85 -- .......................................................................
86 -- .......................................................................
87 -- .......................................................................
88 -- .......................................................................
89 -- .......................................................................
90 -- .......................................................................
91 -- .**.******.*..*.*.....*.....*..*.*..*.**.******.***.*..**.**..****...*.
92 -- ........*.................................*............................
93 -- ...............................*....*............................*.....
94 -- .**.******.*..*.*.....*.....*..*.*..*.**.******.***.*..**..*..****...*.
95 -- ...................................................*..*..*........*....
96 -- ........................*.*............................................
97 -- .**.*.*..*............................*.....*...*......*...*...*.......
98 -- .......................*...........................*..*..*........*....
99 -- ...........................*....*......................................
100 -- .**.*.*..*..................................*...*......*...*...*.......
101 -- .............................*.....*...................................
102 -- .**.******.*..*.*.....*.....*..*.*..*.**.******.***.*..**..*..****...*.
103 -- ........*........................*........*..........................*.
104 -- .....................................*.................................
105 -- ..........................................*............................
106 -- ...*.............*...*.........................*.......................
107 -- ..............................*.....................................*..
108 -- ..*......*.................................................*...........
109 -- ...................................................................*...
110 -- ..........*.**....*......*...........................*......*..........
111 -- .**.***..*.*..*.*.....*.....*.........**.*.****.*.*.*..**..*..***......
112 -- .**.*.*..*..................*.........**.*.**...*.*....*...*...**......
113 -- ............................*..........*...............................
114 -- ........*........................*........*............................
115 -- .....*.....*..*.*.....*......................**.....*...*.....*........
116 -- .*..*.*.....................................*..........*.......*.......
117 -- ...........*..*.*.....*.............................*...*..............
118 -- ................................................*......................
119 -- .*..*..................................................*...............
120 -- .*..*..................................................................
121 -- ........................*.*........................................*...
122 -- .....*.....*..*.*.....*.......................*.....*...*.....*........
123 -- ..................................*.....*..............................
124 -- ...............*........*.*........................................*...
125 -- ..................*..................................*......*..........
126 -- .**.***..*.*..*.*.....*.....*..*....*.**.*.****.*.*.*..**..*..****.....
127 -- ...................................................*..............*....
128 -- .......................................................................
129 -- ....................*........*.....*...................................
130 -- .**.*************.***.***************.*********.***********************
131 -- .**.******.*..*.*.....*.....*..*.*..*.**.******.***.*..**.**..****...*.
132 -- ........*........................*........*......*...................*.
133 -- ......................................................................*
134 -- .************************************.*********************************
135 -- .**.*.*..*............................*.....*...*......*...*...**......
136 -- .**.******.*..***..**.***.***********.*********.*****.******.**********
137 -- .**.*.*..*..................................*..........*...*...*.......
138 -- ...................................................*..*...........*....
139 -- ...................*...*..........*.....*..........*..*..*........*....
140 -- ..........*.**.........................................................
141 -- .**.******.*..***..**.***.****.******.*********.*****.******.*******.**
142 -- ............................*..........*.*.*......*....................
143 -- .......................................................................
144 -- ...........................*....*.....................................*
145 -- ..................*......*...........................*......*..........
146 -- .......**........................*........*......*...................*.
147 -- ...................*..............*.....*..............................
148 -- ...................*...*...........................*..*..*........*....
149 -- .......................................................................
150 -- ...............................*....*..................................
151 -- ....*..................................................................
152 -- .*..*..................................................*...............
153 -- ..*........................................................*...........
154 -- .**.***.**.*..*.*.....*.....*..*.*..*.**.******.***.*..**..*..****...*.
155 -- .........*.................................................*...........
156 -- ..................*..................................*.................
157 -- ..*......*.............................................................
158 -- .*.....................................................................
159 -- .......................................................*...............
160 -- ...............................*.................................*.....
161 -- .....................................................*......*..........
162 -- ....................................*............................*.....
163 -- .*..*..................................................................
164 -- .*..*..................................................................
165 -- ..................*.........................................*..........
166 -- .**.******.*..*.*...*.*....***.***.**.**.******.***.*..**.**.*****...**
167 -- ...............*...*...**.*.......*.....*..........*..*..*........**...
168 -- ............**.........................................................
169 -- ...............*...*...**.**....*.*.....*..........*..*..*........**..*
170 -- ..........*..*.........................................................
171 -- ..........*.*..........................................................
172 -- .**.******.*..*.*..**.**...***.******.*********.*****.******.******..**
173 -- ..........*.**...........*.............................................
174 -- .*..*.*................................................*...............
175 -- ............................................*..................*.......
176 -- .*..*..................................................*.......*.......
177 -- .*..*.*.....................................*..........*...............
178 -- ......*.....................................*..................*.......
179 -- ......*.....................................*..........................
180 -- ..........*.**....*..................................*......*..........
181 -- .*..*.*................................................*.......*.......
182 -- ......................................................*................
183 -- .*..*.......................................*..........*.......*.......
184 -- .*..*.......................................*..........*...............
185 -- ......*........................................................*.......
186 -- ...................*...*...*....*.*.....*..........*..*..*........*...*
187 -- ..............................*..............................*......*..
188 -- ...................................................*..*...........*....
189 -- ......................................................*................
190 -- .......................................................................
191 -- ...................................................*..............*....
192 -- ...................................................*..............*....
193 -- .**.******.*..*.*...*.*.....**.*.*.**.**.******.***.*..**.**..****...*.
194 -- ...................................................*..*...........*....
195 -- ...................................................*..............*....
196 -- ......................................................*................
197 -- ...................................................*..*...........*....
198 -- ...........................................*......*....................
199 -- .**.******.*..***..**.***.****.******.*********.*****.******..******.**
200 -- ..*......*......................................*..........*...........
201 -- .........................................*.............................
202 -- .........................................*.*...........................
203 -- ...........................................*...........................
204 -- ..............................................*........................
205 -- ............................*..........*...............................
206 -- ....................................................*...*..............
207 -- .....*.....*..*.*.....*.......................*.....*...*.....*........
208 -- ............................*..........*..........*....................
209 -- ..................................................*....................
210 -- ............................*..........*...*...........................
211 -- ............................*..........*.*.............................
212 -- .........................................*........*....................
213 -- ...........*..*.*...................................*...*..............
214 -- ...........*..*.*.....*.............................*...*.....*........
215 -- ..............*.*......................................................
216 -- ...........*..*.......*.............................*...*..............
217 -- .**.******.*..*.*...*.*.....**.*.*.**.**.******.***.*..**.**.*****...*.
218 -- .....*.....*..*.*.....*.............................*...*.....*........
219 -- .....*.....*..*.*.....*.............................*...*..............
220 -- .**.******.*..*.*.....*.....*..*.*..*.**.******.***.*..**.**.*****...*.
221 -- .....*........................................*........................
222 -- ..............*.......*................................................
223 -- ..............*.....................................*..................
224 -- ...........*..*........................................................
225 -- ................*.....*................................................
226 -- .....*.................................................................
227 -- ............................*..........*.*.*...........................
228 -- ...........*..........*................................................
229 -- .....*.....*..*.*.....*.......................*.....*...*.....*........
230 -- .....*........................................................*........
231 -- .**.******.*..*.*.....*.....*..*.*..*.**.******.***.*..**.**..****...**
232 -- ...........*........................................*..................
233 -- ..............*.........................................*..............
234 -- ..............*.*.....*.............................*...*..............
235 -- ...........*..*.*.....*.................................*..............
236 -- ..............................................*...............*........
237 -- ..............................................................*........
238 -- ...............*...*....*.*........................................*...
239 -- .....*.................................................................
240 -- ................*...................................*..................
241 -- ...........*....*......................................................
242 -- ...........*..*.*.....*.............................*..................
243 -- ................*.......................................*..............
244 -- ...........*..*.*.....*.......................*.....*...*..............
245 -- ...*.............*...*.........................*.......................
246 -- ...........*..*.*.....*.............................*...*..............
247 -- ...........*............................................*..............
248 -- ..............................................................*........
249 -- ......................*.................................*..............
250 -- ..............................................*........................
251 -- ............................*..........*...*......*....................
252 -- ...........*....*.....*.............................*...*..............
253 -- ............................*..........*.*.*......*....................
254 -- ...........*..*.*.....*.............................*...*..............
255 -- .....*........................................*...............*........
256 -- .....*.....*..*.*.....*.......................*.....*...*..............
257 -- .......................................................................
258 -- ....................*........*.....*.........................*.........
259 -- ...............................................*.......................
260 -- ...........*..*.*.....*.......................*.....*...*.....*........
261 -- .....................*.................................................
262 -- .........................................*.*......*....................
263 -- ...*.............*.............................*.......................
264 -- ...*.............*.....................................................
265 -- ...*.................*.........................*.......................
266 -- ......................*.............................*..................
267 -- ...................*...*...*....*.*.....*..........*..*..*........*....
268 -- .**.******.*..*.*.....*....**..***..*.**.******.***.*..**.**..****...**
--------------------------------------------------------------------------------
ID -- Partition (continued)
--------------------------------------------------------------------------------
1 -- *******************
2 -- ...................
3 -- ...................
4 -- ...................
5 -- ...................
6 -- ...................
7 -- ...................
8 -- ...................
9 -- ...................
10 -- ...................
11 -- ...................
12 -- ...................
13 -- ...................
14 -- ...................
15 -- ...................
16 -- ...................
17 -- ...................
18 -- ...................
19 -- ...................
20 -- ...................
21 -- ...................
22 -- ...................
23 -- ...................
24 -- ...................
25 -- ...................
26 -- ...................
27 -- ...................
28 -- ...................
29 -- ...................
30 -- ...................
31 -- ...................
32 -- ...................
33 -- ...................
34 -- ...................
35 -- ...................
36 -- ...................
37 -- ...................
38 -- ...................
39 -- ...................
40 -- ...................
41 -- ...................
42 -- ...................
43 -- ...................
44 -- ...................
45 -- ...................
46 -- ...................
47 -- ...................
48 -- ...................
49 -- ...................
50 -- ...................
51 -- ...................
52 -- ...................
53 -- ...................
54 -- ...................
55 -- ...................
56 -- ...................
57 -- ...................
58 -- ...................
59 -- ...................
60 -- ...................
61 -- ...................
62 -- ...................
63 -- ...................
64 -- ...................
65 -- ...................
66 -- ...................
67 -- ...................
68 -- ...................
69 -- ...................
70 -- ...................
71 -- ...................
72 -- *..................
73 -- .*.................
74 -- ..*................
75 -- ...*...............
76 -- ....*..............
77 -- .....*.............
78 -- ......*............
79 -- .......*...........
80 -- ........*..........
81 -- .........*.........
82 -- ..........*........
83 -- ...........*.......
84 -- ............*......
85 -- .............*.....
86 -- ..............*....
87 -- ...............*...
88 -- ................*..
89 -- .................*.
90 -- ..................*
91 -- ..*..**.**...**...*
92 -- .....*.............
93 -- ...................
94 -- ..*..*..**...**...*
95 -- ................**.
96 -- ...................
97 -- ........*....*....*
98 -- ................**.
99 -- ...................
100 -- ........*....*....*
101 -- ...................
102 -- ..*..**.**...**...*
103 -- .....*.............
104 -- .......*...........
105 -- .....*.............
106 -- .*.*........*......
107 -- ...................
108 -- ...................
109 -- *...*......*.......
110 -- ...................
111 -- ..*.....**...**...*
112 -- ........*....**...*
113 -- ...................
114 -- .....*.............
115 -- ..*......*.........
116 -- ........*.........*
117 -- ...................
118 -- .............*.....
119 -- ........*.........*
120 -- ........*..........
121 -- *...*......*.......
122 -- ..*......*.........
123 -- ...................
124 -- *...*......*.......
125 -- ...................
126 -- ..*.....**...**...*
127 -- ...................
128 -- *...*......*.......
129 -- ...................
130 -- *.*.***.****.******
131 -- ..*..**.***..**...*
132 -- .....*.............
133 -- ...............*...
134 -- *******.***********
135 -- ........*....*....*
136 -- *.*.***.****.******
137 -- ........*.........*
138 -- ................**.
139 -- ................**.
140 -- ...................
141 -- *.*.***.****.******
142 -- ..............*....
143 -- *...*..............
144 -- ...............*...
145 -- ...................
146 -- .....*.............
147 -- ...................
148 -- ................**.
149 -- *..........*.......
150 -- ...................
151 -- ........*..........
152 -- ........*..........
153 -- ...................
154 -- ..*..*..**...**...*
155 -- ...................
156 -- ...................
157 -- ...................
158 -- ........*..........
159 -- ..................*
160 -- ...................
161 -- ...................
162 -- ...................
163 -- ........*.........*
164 -- ...................
165 -- ...................
166 -- ..*..**.***..***..*
167 -- *...*......*....**.
168 -- ...................
169 -- *...*......*...***.
170 -- ...................
171 -- ...................
172 -- ..*..**.***..******
173 -- ...................
174 -- ........*.........*
175 -- ...................
176 -- ........*.........*
177 -- ........*.........*
178 -- ...................
179 -- ...................
180 -- ...................
181 -- ........*.........*
182 -- .................*.
183 -- ........*.........*
184 -- ........*.........*
185 -- ...................
186 -- ...............***.
187 -- ...................
188 -- ...................
189 -- ................*..
190 -- ................**.
191 -- ................*..
192 -- .................*.
193 -- ..*..**.***..**...*
194 -- .................*.
195 -- ................**.
196 -- ................**.
197 -- ................*..
198 -- ...................
199 -- *.*.***.****.******
200 -- .............*.....
201 -- ..............*....
202 -- ...................
203 -- ..............*....
204 -- ..*................
205 -- ..............*....
206 -- ...................
207 -- ..*................
208 -- ...................
209 -- ..............*....
210 -- ...................
211 -- ...................
212 -- ...................
213 -- ...................
214 -- ...................
215 -- ...................
216 -- ...................
217 -- ..*..**.***..**...*
218 -- ..*......*.........
219 -- ...................
220 -- ..*..**.***..**...*
221 -- ...................
222 -- ...................
223 -- ...................
224 -- ...................
225 -- ...................
226 -- .........*.........
227 -- ..............*....
228 -- ...................
229 -- .........*.........
230 -- ...................
231 -- ..*..**.***..***..*
232 -- ...................
233 -- ...................
234 -- ...................
235 -- ...................
236 -- ...................
237 -- ..*................
238 -- *...*......*.......
239 -- ..*................
240 -- ...................
241 -- ...................
242 -- ...................
243 -- ...................
244 -- ...................
245 -- .*.*...............
246 -- ..*................
247 -- ...................
248 -- .........*.........
249 -- ...................
250 -- .........*.........
251 -- ..............*....
252 -- ...................
253 -- ...................
254 -- .........*.........
255 -- ..*......*.........
256 -- ..*......*.........
257 -- ..*......*.........
258 -- ...................
259 -- ...*...............
260 -- ..*......*.........
261 -- ............*......
262 -- ..............*....
263 -- .*.*........*......
264 -- ...................
265 -- .*.*........*......
266 -- ...................
267 -- ................**.
268 -- ..*..**.***..***..*
--------------------------------------------------------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
-----------------------------------------------------------------
91 3002 1.000000 0.000000 1.000000 1.000000 2
92 3002 1.000000 0.000000 1.000000 1.000000 2
93 3002 1.000000 0.000000 1.000000 1.000000 2
94 3002 1.000000 0.000000 1.000000 1.000000 2
95 3002 1.000000 0.000000 1.000000 1.000000 2
96 3002 1.000000 0.000000 1.000000 1.000000 2
97 3002 1.000000 0.000000 1.000000 1.000000 2
98 3002 1.000000 0.000000 1.000000 1.000000 2
99 3002 1.000000 0.000000 1.000000 1.000000 2
100 3002 1.000000 0.000000 1.000000 1.000000 2
101 3002 1.000000 0.000000 1.000000 1.000000 2
102 3002 1.000000 0.000000 1.000000 1.000000 2
103 3002 1.000000 0.000000 1.000000 1.000000 2
104 3002 1.000000 0.000000 1.000000 1.000000 2
105 3002 1.000000 0.000000 1.000000 1.000000 2
106 3002 1.000000 0.000000 1.000000 1.000000 2
107 3002 1.000000 0.000000 1.000000 1.000000 2
108 3002 1.000000 0.000000 1.000000 1.000000 2
109 3002 1.000000 0.000000 1.000000 1.000000 2
110 3002 1.000000 0.000000 1.000000 1.000000 2
111 3002 1.000000 0.000000 1.000000 1.000000 2
112 3001 0.999667 0.000471 0.999334 1.000000 2
113 3000 0.999334 0.000942 0.998668 1.000000 2
114 2979 0.992338 0.004240 0.989340 0.995336 2
115 2976 0.991339 0.002827 0.989340 0.993338 2
116 2965 0.987675 0.002355 0.986009 0.989340 2
117 2964 0.987342 0.000942 0.986676 0.988008 2
118 2952 0.983344 0.000000 0.983344 0.983344 2
119 2952 0.983344 0.004711 0.980013 0.986676 2
120 2950 0.982678 0.000942 0.982012 0.983344 2
121 2929 0.975683 0.003298 0.973351 0.978015 2
122 2921 0.973018 0.006124 0.968688 0.977348 2
123 2889 0.962358 0.002355 0.960693 0.964024 2
124 2887 0.961692 0.000471 0.961359 0.962025 2
125 2887 0.961692 0.001413 0.960693 0.962692 2
126 2822 0.940040 0.004711 0.936709 0.943371 2
127 2816 0.938041 0.017901 0.925383 0.950700 2
128 2731 0.909727 0.015546 0.898734 0.920720 2
129 2726 0.908061 0.011306 0.900067 0.916056 2
130 2708 0.902065 0.052762 0.864757 0.939374 2
131 2707 0.901732 0.067366 0.854097 0.949367 2
132 2703 0.900400 0.010835 0.892738 0.908061 2
133 2697 0.898401 0.026852 0.879414 0.917388 2
134 2657 0.885077 0.025910 0.866755 0.903398 2
135 2633 0.877082 0.003298 0.874750 0.879414 2
136 2357 0.785143 0.008009 0.779480 0.790806 2
137 2320 0.772818 0.015075 0.762159 0.783478 2
138 2139 0.712525 0.021199 0.697535 0.727515 2
139 1969 0.655896 0.048522 0.621586 0.690207 2
140 1965 0.654564 0.022141 0.638907 0.670220 2
141 1961 0.653231 0.007066 0.648235 0.658228 2
142 1922 0.640240 0.053704 0.602265 0.678215 2
143 1817 0.605263 0.007066 0.600266 0.610260 2
144 1691 0.563291 0.057002 0.522985 0.603598 2
145 1658 0.552298 0.003769 0.549634 0.554963 2
146 1577 0.525316 0.001413 0.524317 0.526316 2
147 1206 0.401732 0.052762 0.364424 0.439041 2
148 1043 0.347435 0.007066 0.342438 0.352432 2
149 1040 0.346436 0.015075 0.335776 0.357095 2
150 1026 0.341772 0.006595 0.337109 0.346436 2
151 1025 0.341439 0.019315 0.327781 0.355097 2
152 1011 0.336775 0.025910 0.318454 0.355097 2
153 1007 0.335443 0.000471 0.335110 0.335776 2
154 1002 0.333777 0.004711 0.330446 0.337109 2
155 998 0.332445 0.001884 0.331113 0.333777 2
156 997 0.332112 0.000471 0.331779 0.332445 2
157 997 0.332112 0.001413 0.331113 0.333111 2
158 996 0.331779 0.007537 0.326449 0.337109 2
159 992 0.330446 0.011306 0.322452 0.338441 2
160 992 0.330446 0.004711 0.327115 0.333777 2
161 990 0.329780 0.006595 0.325117 0.334444 2
162 984 0.327781 0.011306 0.319787 0.335776 2
163 980 0.326449 0.011306 0.318454 0.334444 2
164 970 0.323118 0.012248 0.314457 0.331779 2
165 952 0.317122 0.002827 0.315123 0.319121 2
166 885 0.294803 0.024026 0.277815 0.311792 2
167 885 0.294803 0.020257 0.280480 0.309127 2
168 866 0.288474 0.002827 0.286476 0.290473 2
169 862 0.287142 0.000000 0.287142 0.287142 2
170 831 0.276815 0.009893 0.269820 0.283811 2
171 806 0.268488 0.012248 0.259827 0.277149 2
172 700 0.233178 0.023555 0.216522 0.249833 2
173 677 0.225516 0.003298 0.223185 0.227848 2
174 643 0.214191 0.007066 0.209194 0.219187 2
175 643 0.214191 0.021199 0.199201 0.229181 2
176 605 0.201532 0.033447 0.177881 0.225183 2
177 604 0.201199 0.003769 0.198534 0.203864 2
178 602 0.200533 0.010364 0.193205 0.207861 2
179 598 0.199201 0.008480 0.193205 0.205197 2
180 590 0.196536 0.008480 0.190540 0.202532 2
181 572 0.190540 0.004711 0.187209 0.193871 2
182 568 0.189207 0.000000 0.189207 0.189207 2
183 560 0.186542 0.006595 0.181879 0.191206 2
184 558 0.185876 0.000942 0.185210 0.186542 2
185 553 0.184211 0.016488 0.172552 0.195869 2
186 547 0.182212 0.036274 0.156562 0.207861 2
187 538 0.179214 0.010364 0.171885 0.186542 2
188 534 0.177881 0.000942 0.177215 0.178548 2
189 531 0.176882 0.007066 0.171885 0.181879 2
190 529 0.176216 0.007066 0.171219 0.181213 2
191 527 0.175550 0.002355 0.173884 0.177215 2
192 509 0.169554 0.025910 0.151233 0.187875 2
193 484 0.161226 0.009422 0.154564 0.167888 2
194 479 0.159560 0.008951 0.153231 0.165889 2
195 473 0.157562 0.008951 0.151233 0.163891 2
196 472 0.157229 0.017901 0.144570 0.169887 2
197 454 0.151233 0.017901 0.138574 0.163891 2
198 419 0.139574 0.017430 0.127249 0.151899 2
199 417 0.138907 0.001413 0.137908 0.139907 2
200 405 0.134910 0.010835 0.127249 0.142572 2
201 401 0.133578 0.018373 0.120586 0.146569 2
202 400 0.133245 0.004711 0.129913 0.136576 2
203 394 0.131246 0.002827 0.129247 0.133245 2
204 391 0.130247 0.002355 0.128581 0.131912 2
205 389 0.129580 0.008009 0.123917 0.135243 2
206 384 0.127915 0.002827 0.125916 0.129913 2
207 379 0.126249 0.002355 0.124584 0.127915 2
208 373 0.124250 0.012719 0.115256 0.133245 2
209 371 0.123584 0.002355 0.121919 0.125250 2
210 368 0.122585 0.006595 0.117921 0.127249 2
211 364 0.121252 0.008480 0.115256 0.127249 2
212 363 0.120919 0.004240 0.117921 0.123917 2
213 363 0.120919 0.006124 0.116589 0.125250 2
214 359 0.119587 0.002355 0.117921 0.121252 2
215 350 0.116589 0.002827 0.114590 0.118588 2
216 349 0.116256 0.033447 0.092605 0.139907 2
217 348 0.115923 0.002827 0.113924 0.117921 2
218 347 0.115590 0.015546 0.104597 0.126582 2
219 345 0.114923 0.011777 0.106596 0.123251 2
220 342 0.113924 0.012248 0.105263 0.122585 2
221 342 0.113924 0.006595 0.109260 0.118588 2
222 342 0.113924 0.001884 0.112592 0.115256 2
223 342 0.113924 0.002827 0.111925 0.115923 2
224 339 0.112925 0.000471 0.112592 0.113258 2
225 338 0.112592 0.016017 0.101266 0.123917 2
226 336 0.111925 0.006595 0.107262 0.116589 2
227 335 0.111592 0.009893 0.104597 0.118588 2
228 335 0.111592 0.020257 0.097268 0.125916 2
229 335 0.111592 0.001413 0.110593 0.112592 2
230 333 0.110926 0.008951 0.104597 0.117255 2
231 333 0.110926 0.017430 0.098601 0.123251 2
232 331 0.110260 0.001413 0.109260 0.111259 2
233 329 0.109594 0.009893 0.102598 0.116589 2
234 328 0.109260 0.010364 0.101932 0.116589 2
235 328 0.109260 0.014133 0.099267 0.119254 2
236 327 0.108927 0.007066 0.103931 0.113924 2
237 327 0.108927 0.008009 0.103264 0.114590 2
238 326 0.108594 0.032034 0.085943 0.131246 2
239 326 0.108594 0.001884 0.107262 0.109927 2
240 326 0.108594 0.013191 0.099267 0.117921 2
241 325 0.108261 0.004240 0.105263 0.111259 2
242 324 0.107928 0.002827 0.105929 0.109927 2
243 323 0.107595 0.008951 0.101266 0.113924 2
244 323 0.107595 0.004240 0.104597 0.110593 2
245 322 0.107262 0.008480 0.101266 0.113258 2
246 319 0.106262 0.004240 0.103264 0.109260 2
247 319 0.106262 0.009893 0.099267 0.113258 2
248 319 0.106262 0.009893 0.099267 0.113258 2
249 319 0.106262 0.002355 0.104597 0.107928 2
250 314 0.104597 0.010364 0.097268 0.111925 2
251 312 0.103931 0.012248 0.095270 0.112592 2
252 311 0.103598 0.010835 0.095936 0.111259 2
253 309 0.102931 0.016488 0.091272 0.114590 2
254 308 0.102598 0.005653 0.098601 0.106596 2
255 308 0.102598 0.005653 0.098601 0.106596 2
256 304 0.101266 0.001884 0.099933 0.102598 2
257 299 0.099600 0.005182 0.095936 0.103264 2
258 299 0.099600 0.007066 0.094604 0.104597 2
259 297 0.098934 0.005182 0.095270 0.102598 2
260 291 0.096935 0.008951 0.090606 0.103264 2
261 290 0.096602 0.015075 0.085943 0.107262 2
262 287 0.095603 0.007066 0.090606 0.100600 2
263 287 0.095603 0.013662 0.085943 0.105263 2
264 281 0.093604 0.010835 0.085943 0.101266 2
265 281 0.093604 0.011777 0.085276 0.101932 2
266 280 0.093271 0.010364 0.085943 0.100600 2
267 280 0.093271 0.014133 0.083278 0.103264 2
268 267 0.088941 0.022141 0.073284 0.104597 2
-----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
--------------------------------------------------------------------------------------------
length{all}[1] 0.055400 0.000162 0.031443 0.079649 0.054234 1.003 2
length{all}[2] 0.001623 0.000003 0.000000 0.004858 0.001104 1.000 2
length{all}[3] 0.001694 0.000003 0.000000 0.005074 0.001129 1.000 2
length{all}[4] 0.001641 0.000003 0.000001 0.005003 0.001087 1.004 2
length{all}[5] 0.003434 0.000006 0.000036 0.008078 0.002920 1.001 2
length{all}[6] 0.003262 0.000005 0.000212 0.007669 0.002784 1.001 2
length{all}[7] 0.001685 0.000003 0.000002 0.004976 0.001128 1.002 2
length{all}[8] 0.039801 0.000106 0.021921 0.060197 0.038959 1.002 2
length{all}[9] 0.017710 0.000046 0.005768 0.030784 0.016944 1.000 2
length{all}[10] 0.001743 0.000003 0.000002 0.005140 0.001206 1.001 2
length{all}[11] 0.001709 0.000003 0.000000 0.005194 0.001195 1.002 2
length{all}[12] 0.001688 0.000003 0.000001 0.005166 0.001217 1.001 2
length{all}[13] 0.001754 0.000003 0.000001 0.005308 0.001176 1.000 2
length{all}[14] 0.001611 0.000003 0.000002 0.005205 0.001115 1.000 2
length{all}[15] 0.001650 0.000003 0.000000 0.005047 0.001130 1.000 2
length{all}[16] 0.046776 0.000115 0.027426 0.068111 0.046190 1.006 2
length{all}[17] 0.001573 0.000002 0.000001 0.004825 0.001057 1.001 2
length{all}[18] 0.001676 0.000003 0.000001 0.005162 0.001147 1.001 2
length{all}[19] 0.001706 0.000003 0.000000 0.005220 0.001162 1.000 2
length{all}[20] 0.047731 0.000119 0.025177 0.068668 0.047365 1.003 2
length{all}[21] 0.081377 0.000253 0.052278 0.113170 0.080212 1.006 2
length{all}[22] 0.001587 0.000003 0.000001 0.004792 0.001065 1.000 2
length{all}[23] 0.001683 0.000003 0.000000 0.005250 0.001143 1.000 2
length{all}[24] 0.041063 0.000111 0.021489 0.061341 0.040314 1.006 2
length{all}[25] 0.006827 0.000016 0.000256 0.014507 0.006057 1.002 2
length{all}[26] 0.001827 0.000004 0.000001 0.005549 0.001174 1.001 2
length{all}[27] 0.018841 0.000036 0.007498 0.030215 0.018399 1.002 2
length{all}[28] 0.012686 0.000032 0.002271 0.023096 0.012148 1.000 2
length{all}[29] 0.001687 0.000003 0.000001 0.004874 0.001196 1.001 2
length{all}[30] 0.025097 0.000059 0.010477 0.040717 0.024496 1.001 2
length{all}[31] 0.013725 0.000028 0.004535 0.024045 0.013010 1.001 2
length{all}[32] 0.001604 0.000002 0.000000 0.004845 0.001143 1.003 2
length{all}[33] 0.020844 0.000047 0.008532 0.033949 0.019907 1.000 2
length{all}[34] 0.024140 0.000064 0.009888 0.039357 0.023462 1.000 2
length{all}[35] 0.034033 0.000088 0.017722 0.053440 0.033250 1.014 2
length{all}[36] 0.005150 0.000015 0.000009 0.012712 0.004347 1.000 2
length{all}[37] 0.001767 0.000003 0.000001 0.005227 0.001250 1.000 2
length{all}[38] 0.001592 0.000003 0.000001 0.004724 0.001059 1.000 2
length{all}[39] 0.006798 0.000013 0.000805 0.013592 0.006254 1.000 2
length{all}[40] 0.001651 0.000003 0.000000 0.005387 0.001083 1.001 2
length{all}[41] 0.082547 0.000219 0.054688 0.110984 0.081190 1.011 2
length{all}[42] 0.001687 0.000003 0.000000 0.004967 0.001199 1.004 2
length{all}[43] 0.001730 0.000003 0.000003 0.005400 0.001198 1.000 2
length{all}[44] 0.001719 0.000003 0.000001 0.005176 0.001207 1.000 2
length{all}[45] 0.001726 0.000003 0.000002 0.005111 0.001265 1.000 2
length{all}[46] 0.001698 0.000003 0.000001 0.004953 0.001228 1.000 2
length{all}[47] 0.001723 0.000003 0.000000 0.005170 0.001141 1.001 2
length{all}[48] 0.001673 0.000003 0.000000 0.005115 0.001136 1.001 2
length{all}[49] 0.012541 0.000026 0.004409 0.022556 0.011753 1.000 2
length{all}[50] 0.048544 0.000130 0.028579 0.072683 0.047092 1.004 2
length{all}[51] 0.001679 0.000003 0.000000 0.005077 0.001142 1.000 2
length{all}[52] 0.001644 0.000003 0.000001 0.004855 0.001130 1.002 2
length{all}[53] 0.001645 0.000003 0.000002 0.004954 0.001161 1.001 2
length{all}[54] 0.001643 0.000003 0.000001 0.004731 0.001139 1.000 2
length{all}[55] 0.001615 0.000003 0.000000 0.004822 0.001135 1.000 2
length{all}[56] 0.001761 0.000003 0.000002 0.005256 0.001254 1.000 2
length{all}[57] 0.004949 0.000009 0.000635 0.010980 0.004333 1.000 2
length{all}[58] 0.002150 0.000004 0.000001 0.006143 0.001552 1.000 2
length{all}[59] 0.101319 0.000521 0.058011 0.147198 0.099548 1.009 2
length{all}[60] 0.003274 0.000005 0.000052 0.007759 0.002786 1.008 2
length{all}[61] 0.003321 0.000006 0.000047 0.008117 0.002682 1.001 2
length{all}[62] 0.051810 0.000146 0.029834 0.076363 0.051323 1.000 2
length{all}[63] 0.003421 0.000006 0.000104 0.007968 0.002837 1.000 2
length{all}[64] 0.003305 0.000005 0.000087 0.007977 0.002821 1.003 2
length{all}[65] 0.049248 0.000108 0.031208 0.071259 0.048020 1.001 2
length{all}[66] 0.001708 0.000003 0.000002 0.005137 0.001227 1.000 2
length{all}[67] 0.001646 0.000003 0.000001 0.004853 0.001123 1.001 2
length{all}[68] 0.002466 0.000006 0.000004 0.007682 0.001681 1.001 2
length{all}[69] 0.006815 0.000015 0.000188 0.014326 0.006202 1.000 2
length{all}[70] 0.061961 0.000158 0.036900 0.084837 0.061117 1.013 2
length{all}[71] 0.071607 0.000213 0.041622 0.098593 0.070356 1.000 2
length{all}[72] 0.002186 0.000004 0.000001 0.006373 0.001530 1.004 2
length{all}[73] 0.001756 0.000003 0.000001 0.005388 0.001209 1.000 2
length{all}[74] 0.001629 0.000003 0.000001 0.005032 0.001097 1.000 2
length{all}[75] 0.001824 0.000003 0.000002 0.005557 0.001262 1.000 2
length{all}[76] 0.009497 0.000017 0.003123 0.017730 0.008914 1.000 2
length{all}[77] 0.001621 0.000002 0.000001 0.004797 0.001148 1.000 2
length{all}[78] 0.130896 0.000668 0.078204 0.177574 0.130513 1.000 2
length{all}[79] 0.001763 0.000003 0.000001 0.005172 0.001212 1.000 2
length{all}[80] 0.003484 0.000006 0.000139 0.008427 0.002883 1.001 2
length{all}[81] 0.003373 0.000006 0.000060 0.008074 0.002863 1.000 2
length{all}[82] 0.084665 0.000452 0.046449 0.128302 0.083639 1.004 2
length{all}[83] 0.001896 0.000003 0.000002 0.005600 0.001345 1.000 2
length{all}[84] 0.003349 0.000006 0.000001 0.008123 0.002874 1.000 2
length{all}[85] 0.019625 0.000036 0.009526 0.031550 0.018889 1.000 2
length{all}[86] 0.005062 0.000009 0.000385 0.011043 0.004448 1.002 2
length{all}[87] 0.063704 0.000196 0.039393 0.093008 0.062533 1.000 2
length{all}[88] 0.001590 0.000003 0.000000 0.004758 0.001073 1.000 2
length{all}[89] 0.003302 0.000006 0.000031 0.008194 0.002691 1.000 2
length{all}[90] 0.001590 0.000003 0.000000 0.004900 0.001072 1.000 2
length{all}[91] 0.153343 0.000895 0.092586 0.209388 0.151460 1.003 2
length{all}[92] 0.029245 0.000073 0.011656 0.044560 0.028719 1.000 2
length{all}[93] 0.034452 0.000091 0.016779 0.052895 0.033456 1.001 2
length{all}[94] 0.071696 0.000461 0.033210 0.116561 0.069367 1.000 2
length{all}[95] 0.039529 0.000112 0.021021 0.060357 0.038414 1.000 2
length{all}[96] 0.073382 0.000218 0.046549 0.102537 0.072399 1.006 2
length{all}[97] 0.016270 0.000038 0.006499 0.029171 0.015487 1.002 2
length{all}[98] 0.034606 0.000102 0.016688 0.055330 0.033787 1.000 2
length{all}[99] 0.045502 0.000131 0.023947 0.068208 0.044421 1.000 2
length{all}[100] 0.013408 0.000026 0.004284 0.023453 0.012779 1.005 2
length{all}[101] 0.057577 0.000188 0.032571 0.085758 0.056898 1.000 2
length{all}[102] 0.109397 0.000634 0.065494 0.163348 0.107083 1.000 2
length{all}[103] 0.019042 0.000056 0.005571 0.033845 0.018163 1.002 2
length{all}[104] 0.056853 0.000168 0.032250 0.083952 0.055752 1.012 2
length{all}[105] 0.029391 0.000072 0.014367 0.046195 0.028667 1.001 2
length{all}[106] 0.052185 0.000151 0.028577 0.075961 0.051519 1.000 2
length{all}[107] 0.047618 0.000128 0.027106 0.070354 0.047169 1.000 2
length{all}[108] 0.008733 0.000015 0.002070 0.016288 0.008134 1.000 2
length{all}[109] 0.028542 0.000079 0.013471 0.047043 0.027781 1.000 2
length{all}[110] 0.074214 0.000238 0.045254 0.105917 0.073737 1.000 2
length{all}[111] 0.060968 0.000159 0.037182 0.086188 0.060087 1.000 2
length{all}[112] 0.014804 0.000032 0.004938 0.025743 0.014181 1.000 2
length{all}[113] 0.003431 0.000006 0.000037 0.008324 0.002773 1.001 2
length{all}[114] 0.012522 0.000041 0.002156 0.025110 0.011657 1.000 2
length{all}[115] 0.008441 0.000019 0.001099 0.017039 0.007708 1.001 2
length{all}[116] 0.004942 0.000009 0.000468 0.010710 0.004284 1.000 2
length{all}[117] 0.003374 0.000006 0.000144 0.008261 0.002783 1.000 2
length{all}[118] 0.005469 0.000011 0.000203 0.012074 0.004860 1.001 2
length{all}[119] 0.003404 0.000006 0.000140 0.008207 0.002861 1.000 2
length{all}[120] 0.003426 0.000007 0.000014 0.008406 0.002795 1.000 2
length{all}[121] 0.020236 0.000070 0.006346 0.037818 0.019140 1.000 2
length{all}[122] 0.003356 0.000006 0.000057 0.007938 0.002919 1.001 2
length{all}[123] 0.017321 0.000058 0.003263 0.031905 0.016421 1.001 2
length{all}[124] 0.015231 0.000057 0.001567 0.029505 0.014535 1.007 2
length{all}[125] 0.003414 0.000006 0.000041 0.008215 0.002870 1.001 2
length{all}[126] 0.016668 0.000061 0.002717 0.031681 0.015870 1.001 2
length{all}[127] 0.003216 0.000005 0.000047 0.007418 0.002738 1.006 2
length{all}[128] 0.005704 0.000011 0.000001 0.011635 0.005229 1.000 2
length{all}[129] 0.022010 0.000086 0.005494 0.040564 0.021426 1.000 2
length{all}[130] 0.024489 0.000121 0.004118 0.045693 0.023418 1.001 2
length{all}[131] 0.039631 0.000234 0.012100 0.069986 0.037735 1.000 2
length{all}[132] 0.010409 0.000034 0.000952 0.021667 0.009598 1.001 2
length{all}[133] 0.020298 0.000083 0.004109 0.038564 0.019179 1.000 2
length{all}[134] 0.018671 0.000075 0.003334 0.035565 0.017881 1.000 2
length{all}[135] 0.005179 0.000012 0.000013 0.012014 0.004450 1.000 2
length{all}[136] 0.020529 0.000116 0.001308 0.040519 0.019284 1.000 2
length{all}[137] 0.003320 0.000006 0.000004 0.008218 0.002796 1.000 2
length{all}[138] 0.003266 0.000006 0.000019 0.007886 0.002712 1.000 2
length{all}[139] 0.011808 0.000044 0.000013 0.023785 0.010787 1.000 2
length{all}[140] 0.003077 0.000006 0.000001 0.007619 0.002446 1.001 2
length{all}[141] 0.014617 0.000059 0.001319 0.029324 0.013818 1.000 2
length{all}[142] 0.003645 0.000007 0.000058 0.008764 0.003098 1.003 2
length{all}[143] 0.003195 0.000006 0.000000 0.007892 0.002578 1.000 2
length{all}[144] 0.013185 0.000059 0.000965 0.028827 0.012133 1.001 2
length{all}[145] 0.002838 0.000006 0.000001 0.007509 0.002179 1.000 2
length{all}[146] 0.008165 0.000031 0.000019 0.018339 0.007178 1.002 2
length{all}[147] 0.006717 0.000024 0.000016 0.016219 0.005508 1.003 2
length{all}[148] 0.008907 0.000035 0.000018 0.019627 0.007899 0.999 2
length{all}[149] 0.003161 0.000005 0.000196 0.007686 0.002647 1.001 2
length{all}[150] 0.001710 0.000003 0.000001 0.004977 0.001246 1.000 2
length{all}[151] 0.001821 0.000003 0.000003 0.005347 0.001367 0.999 2
length{all}[152] 0.001702 0.000003 0.000000 0.005139 0.001229 1.000 2
length{all}[153] 0.001727 0.000003 0.000001 0.005519 0.001175 0.999 2
length{all}[154] 0.008957 0.000041 0.000028 0.021095 0.007796 1.001 2
length{all}[155] 0.001723 0.000003 0.000000 0.005288 0.001148 0.999 2
length{all}[156] 0.001769 0.000003 0.000000 0.005262 0.001264 1.000 2
length{all}[157] 0.001745 0.000003 0.000002 0.005278 0.001250 0.999 2
length{all}[158] 0.001719 0.000003 0.000004 0.005393 0.001139 0.999 2
length{all}[159] 0.001762 0.000003 0.000000 0.005331 0.001309 0.999 2
length{all}[160] 0.001720 0.000003 0.000001 0.004945 0.001154 1.000 2
length{all}[161] 0.001799 0.000003 0.000002 0.005138 0.001205 1.002 2
length{all}[162] 0.001765 0.000003 0.000001 0.005322 0.001242 0.999 2
length{all}[163] 0.001791 0.000003 0.000001 0.005478 0.001328 0.999 2
length{all}[164] 0.001745 0.000003 0.000003 0.005093 0.001272 1.001 2
length{all}[165] 0.001777 0.000003 0.000000 0.005043 0.001327 0.999 2
length{all}[166] 0.012276 0.000040 0.001397 0.024361 0.011318 1.005 2
length{all}[167] 0.008406 0.000030 0.000126 0.019005 0.007475 1.007 2
length{all}[168] 0.001675 0.000003 0.000001 0.005235 0.001121 0.999 2
length{all}[169] 0.016052 0.000066 0.001914 0.032507 0.014850 1.007 2
length{all}[170] 0.001731 0.000003 0.000001 0.005135 0.001135 0.999 2
length{all}[171] 0.001660 0.000003 0.000002 0.005043 0.001140 0.999 2
length{all}[172] 0.009430 0.000033 0.000219 0.020599 0.008370 1.000 2
length{all}[173] 0.001960 0.000004 0.000004 0.005900 0.001363 0.999 2
length{all}[174] 0.001733 0.000003 0.000000 0.005034 0.001205 1.005 2
length{all}[175] 0.001719 0.000003 0.000002 0.005012 0.001166 0.999 2
length{all}[176] 0.001671 0.000003 0.000000 0.004915 0.001142 0.999 2
length{all}[177] 0.001674 0.000003 0.000002 0.005355 0.001121 0.999 2
length{all}[178] 0.001726 0.000003 0.000003 0.004993 0.001186 0.998 2
length{all}[179] 0.001795 0.000003 0.000006 0.004965 0.001312 1.001 2
length{all}[180] 0.001603 0.000002 0.000001 0.004694 0.001150 1.000 2
length{all}[181] 0.001664 0.000003 0.000003 0.004917 0.001136 1.003 2
length{all}[182] 0.001506 0.000002 0.000004 0.004611 0.001075 0.999 2
length{all}[183] 0.001642 0.000003 0.000004 0.004585 0.001179 0.999 2
length{all}[184] 0.001751 0.000003 0.000006 0.005324 0.001175 1.001 2
length{all}[185] 0.001627 0.000002 0.000003 0.004694 0.001199 0.998 2
length{all}[186] 0.011701 0.000057 0.000296 0.026044 0.010560 1.000 2
length{all}[187] 0.012665 0.000054 0.000006 0.027006 0.011539 1.025 2
length{all}[188] 0.001561 0.000003 0.000002 0.005114 0.001037 1.000 2
length{all}[189] 0.001690 0.000003 0.000000 0.005121 0.001175 1.000 2
length{all}[190] 0.001557 0.000002 0.000001 0.004358 0.001082 0.998 2
length{all}[191] 0.001706 0.000003 0.000003 0.005014 0.001237 1.000 2
length{all}[192] 0.001860 0.000004 0.000004 0.005911 0.001240 0.998 2
length{all}[193] 0.006717 0.000033 0.000007 0.017330 0.005121 0.999 2
length{all}[194] 0.001682 0.000003 0.000001 0.005106 0.001104 1.002 2
length{all}[195] 0.001626 0.000003 0.000001 0.004996 0.001111 1.000 2
length{all}[196] 0.001686 0.000003 0.000003 0.004853 0.001113 1.007 2
length{all}[197] 0.001598 0.000002 0.000005 0.005020 0.001153 0.998 2
length{all}[198] 0.001629 0.000003 0.000001 0.005203 0.000977 1.000 2
length{all}[199] 0.010088 0.000045 0.000043 0.022113 0.008975 0.998 2
length{all}[200] 0.002426 0.000006 0.000001 0.007204 0.001707 0.998 2
length{all}[201] 0.001639 0.000003 0.000003 0.004639 0.001192 0.998 2
length{all}[202] 0.001833 0.000004 0.000002 0.005383 0.001195 0.998 2
length{all}[203] 0.001853 0.000003 0.000017 0.005354 0.001324 0.998 2
length{all}[204] 0.001646 0.000002 0.000003 0.004882 0.001141 0.998 2
length{all}[205] 0.001622 0.000003 0.000018 0.005108 0.001052 0.998 2
length{all}[206] 0.001654 0.000003 0.000001 0.004929 0.001177 0.998 2
length{all}[207] 0.001492 0.000002 0.000003 0.004145 0.001168 0.998 2
length{all}[208] 0.001528 0.000003 0.000001 0.004615 0.000973 0.998 2
length{all}[209] 0.001476 0.000002 0.000003 0.004505 0.001037 0.997 2
length{all}[210] 0.001528 0.000002 0.000001 0.004318 0.001120 0.998 2
length{all}[211] 0.001659 0.000003 0.000006 0.005413 0.001153 0.998 2
length{all}[212] 0.001646 0.000003 0.000005 0.004766 0.001169 0.998 2
length{all}[213] 0.001662 0.000002 0.000003 0.005035 0.001212 1.002 2
length{all}[214] 0.001669 0.000002 0.000002 0.004724 0.001224 0.998 2
length{all}[215] 0.001703 0.000003 0.000005 0.005475 0.001196 0.998 2
length{all}[216] 0.001616 0.000003 0.000015 0.005037 0.001059 0.997 2
length{all}[217] 0.007284 0.000036 0.000010 0.019343 0.005966 1.010 2
length{all}[218] 0.001608 0.000002 0.000006 0.004530 0.001246 1.003 2
length{all}[219] 0.001559 0.000003 0.000001 0.004674 0.001132 0.998 2
length{all}[220] 0.006607 0.000032 0.000001 0.018795 0.004996 0.998 2
length{all}[221] 0.001890 0.000004 0.000003 0.005565 0.001359 0.998 2
length{all}[222] 0.001725 0.000003 0.000007 0.005100 0.001214 1.003 2
length{all}[223] 0.001653 0.000003 0.000008 0.004595 0.001130 1.003 2
length{all}[224] 0.001627 0.000002 0.000004 0.004431 0.001334 0.998 2
length{all}[225] 0.001516 0.000003 0.000002 0.004772 0.001086 1.000 2
length{all}[226] 0.001637 0.000003 0.000008 0.004412 0.001124 0.997 2
length{all}[227] 0.001672 0.000003 0.000003 0.004946 0.001106 1.006 2
length{all}[228] 0.001616 0.000003 0.000000 0.005399 0.001054 0.999 2
length{all}[229] 0.001534 0.000002 0.000003 0.004482 0.001005 0.999 2
length{all}[230] 0.001552 0.000002 0.000002 0.004518 0.001096 0.997 2
length{all}[231] 0.010759 0.000070 0.000020 0.025809 0.009350 0.997 2
length{all}[232] 0.001480 0.000002 0.000004 0.004397 0.001052 0.997 2
length{all}[233] 0.001811 0.000003 0.000008 0.005493 0.001342 0.997 2
length{all}[234] 0.001593 0.000003 0.000004 0.004881 0.001079 1.006 2
length{all}[235] 0.001723 0.000003 0.000013 0.005932 0.001073 0.999 2
length{all}[236] 0.001713 0.000003 0.000005 0.004547 0.001257 0.997 2
length{all}[237] 0.001732 0.000002 0.000010 0.004939 0.001284 0.998 2
length{all}[238] 0.012316 0.000044 0.000109 0.024530 0.011442 1.005 2
length{all}[239] 0.001730 0.000003 0.000010 0.005185 0.001190 1.014 2
length{all}[240] 0.001733 0.000003 0.000004 0.005305 0.001201 0.997 2
length{all}[241] 0.001705 0.000003 0.000002 0.005814 0.001089 0.997 2
length{all}[242] 0.001621 0.000003 0.000002 0.004651 0.001094 0.998 2
length{all}[243] 0.001668 0.000002 0.000007 0.004879 0.001239 0.998 2
length{all}[244] 0.001720 0.000003 0.000003 0.005369 0.001012 1.011 2
length{all}[245] 0.002126 0.000004 0.000008 0.005805 0.001614 1.001 2
length{all}[246] 0.001743 0.000003 0.000003 0.005141 0.001158 0.997 2
length{all}[247] 0.001492 0.000002 0.000001 0.004339 0.001097 0.997 2
length{all}[248] 0.001691 0.000002 0.000000 0.004527 0.001279 1.006 2
length{all}[249] 0.001776 0.000003 0.000002 0.005552 0.001207 1.000 2
length{all}[250] 0.001669 0.000002 0.000019 0.004676 0.001200 0.997 2
length{all}[251] 0.001784 0.000003 0.000001 0.004952 0.001160 0.998 2
length{all}[252] 0.001795 0.000003 0.000012 0.005163 0.001359 0.997 2
length{all}[253] 0.001696 0.000002 0.000002 0.004776 0.001310 0.997 2
length{all}[254] 0.001704 0.000003 0.000001 0.004878 0.001254 0.997 2
length{all}[255] 0.001705 0.000003 0.000006 0.004978 0.001307 0.998 2
length{all}[256] 0.001715 0.000003 0.000002 0.005031 0.001208 1.005 2
length{all}[257] 0.001629 0.000003 0.000014 0.004945 0.001132 1.018 2
length{all}[258] 0.007346 0.000045 0.000001 0.021044 0.005522 0.997 2
length{all}[259] 0.001659 0.000002 0.000000 0.004627 0.001246 0.998 2
length{all}[260] 0.001911 0.000004 0.000003 0.005359 0.001232 0.999 2
length{all}[261] 0.001746 0.000003 0.000000 0.004916 0.001345 1.000 2
length{all}[262] 0.001711 0.000003 0.000002 0.005126 0.001092 1.000 2
length{all}[263] 0.001638 0.000003 0.000000 0.005213 0.001076 0.999 2
length{all}[264] 0.001766 0.000003 0.000008 0.005499 0.001286 0.997 2
length{all}[265] 0.001622 0.000003 0.000002 0.004605 0.001222 0.998 2
length{all}[266] 0.001652 0.000003 0.000003 0.004788 0.001149 1.001 2
length{all}[267] 0.009183 0.000037 0.000429 0.019932 0.007943 1.001 2
length{all}[268] 0.007873 0.000037 0.000179 0.019921 0.006293 1.005 2
--------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.009660
Maximum standard deviation of split frequencies = 0.067366
Average PSRF for parameter values (excluding NA and >10.0) = 1.001
Maximum PSRF for parameter values = 1.025
Clade credibility values:
Subtree rooted at node 117:
/----- C67 (2)
|
/-98-+----- C68 (5)
| |
| \----- C63 (80)
/-98-+
| |---------- C61 (56)
| |
| \---------- C74 (90)
|
/-99-+--------------- C70 (7)
| |
| |--------------- C60 (45)
| |
/-77-+ \--------------- C72 (64)
| |
| | /----- C66 (3)
| | |
| \------100-----+----- C75 (10)
/-100+ |
| | \----- C69 (60)
| |
| | /----- C49 (49)
/100+ \---------98--------+
| | \----- C47 (85)
| |
/-88-+ \------------------------------ C44 (39)
| |
| \---------------------------------- C55 (65)
|
| /----- C35 (29)
/-100+ /-100+
| | | \----- C102 (40)
| | |
| | |---------- C46 (42)
| | |
| \-------------64-------------+---------- C104 (44)
| |
| |---------- C106 (51)
| |
| \---------- C80 (86)
|
| /---------- C14 (6)
| |
| | /----- C59 (12)
/-100+ | |
| | | |----- C77 (15)
| | | |
| | | |----- C76 (17)
| | |-99-+
| | | |----- C58 (23)
| | | |
| | /-97-+ |----- C56 (53)
| | | | |
| | | | \----- C36 (57)
| | | |
| | | |---------- C103 (47)
/-94-+ | | |
| | \-------------99-------------+ |---------- C57 (63)
| | | |
| | | |---------- C100 (74)
| | | |
| | | \---------- C54 (81)
| | |
| | \--------------- C105 (46)
| |
| | /----- C37 (32)
/-100+ | |
| | \--------------------100--------------------+----- C39 (37)
| | |
| | \----- C38 (66)
| |
| | /------------------------------ C13 (8)
| | |
| | | /---------- C16 (9)
| | | |
| | | /-100+ /----- C48 (43)
/-100+ \-----------53----------+ | \-100+
| | | /-99-+ \----- C2 (77)
| | | | |
| | | /-100+ \--------------- C3 (34)
| | | | |
| | \-90-+ \-------------------- C17 (70)
--100+ | |
| | \------------------------- C4 (50)
| |
| \----------------------------------------------------------- C5 (78)
|
\---------------------------------------------------------------- C99 (59)
Root part of tree:
/--------------------------------------------------------------------- C52 (1)
|
| /------- C42 (38)
|-----------------------------100-----------------------------+
| \------- C43 (79)
|
| /------- (117)
| /----------------90---------------+
| | \------- C34 (82)
| |
| | /---------------------------------- C78 (16)
| | |
| | | /------- C86 (25)
| |--96--+ /---------100--------+
| | | | \------- C85 (27)
| | | |
| | \--98-+ /--------------------- C81 (68)
| | | |
| | | | /------- C90 (72)
| | \--100-+ /--61--+
| | | | \------- C88 (76)
| | \--91--+
| | \-------------- C89 (83)
| |
| | /---------------------------------- C84 (20)
| | |
| | | /---------------------------- C30 (24)
| | | |
| | | | /------- C6 (52)
| | | | /--94--+
| | | | | \------- C7 (67)
| | |-100-+ |
| | | | |-------------- C12 (55)
| /--65--+--66--+ | /--71--+
| | | | | | |-------------- C9 (88)
| | | | | | |
+ | | | \--100-+ \-------------- C8 (89)
| | | | |
| | | | \--------------------- C10 (58)
| | | |
| | | | /------- C40 (35)
| | | \------------96------------+
| | | \------- C101 (41)
| | |
| | | /-------------- C83 (21)
| | | |
| | |------------91------------+ /------- C93 (30)
| /--79--+ | \--100-+
| | | | \------- C96 (36)
| | | |
| | | | /------- C33 (28)
| | | | /--100-+
| | | | | \------- C94 (33)
| | | |------------56------------+
| | | | | /------- C98 (71)
| | | | \--90--+
| | | | \------- C97 (87)
| | | |
| | | \----------------------------------------- C82 (62)
| /--90--+ |
| | | | /------- C92 (31)
| | | \-------------------100------------------+
| | | \------- C91 (69)
| | |
| | | /------- C19 (11)
| | | |
| | | /------65-----+------- C18 (13)
| | | | |
| | | | \------- C20 (14)
| | | |
| | \---------------100---------------+ /------- C22 (19)
| | | |
\--89--+ | /--96--+------- C21 (54)
| | | |
| \--55--+ \------- C23 (61)
| |
| \-------------- C87 (26)
|
| /------- C11 (4)
| |
| |------- C25 (18)
| |
| |------- C28 (22)
| |
\--------------------------100-------------------------+------- C1 (48)
|
|------- C27 (73)
|
|------- C32 (75)
|
\------- C26 (84)
Phylogram (based on average branch lengths):
/------ C52 (1)
|
| / C42 (38)
|------+
| \ C43 (79)
|
| / C67 (2)
| |
| /+ C68 (5)
| ||
| |\ C63 (80)
| |
| |- C61 (56)
| |
| | C74 (90)
| |
| /+ C70 (7)
| ||
| || C60 (45)
| ||
| |\ C72 (64)
| |
| |/- C66 (3)
| ||
| |+- C75 (10)
| /+|
| ||\- C69 (60)
| ||
| ||/- C49 (49)
| /-+\+
| | | \-- C47 (85)
| | |
| /+ \ C44 (39)
| ||
| |\------ C55 (65)
| |
| |/ C35 (29)
| /+|
| ||| C102 (40)
| |||
| ||| C46 (42)
| |||
| |\+ C104 (44)
| | |
| | | C106 (51)
| | |
| | \ C80 (86)
| |
| |/ C14 (6)
| ||
| || C59 (12)
| /-------+|
| | || C77 (15)
| | ||
| | || C76 (17)
| | ||
| | || C58 (23)
| | ||
| | |+ C56 (53)
| | ||
| | ||- C36 (57)
| | ||
| | || C103 (47)
| /+ ||
| || || C57 (63)
| || ||
| || || C100 (74)
| || ||
| || |\ C54 (81)
| || |
| || \- C105 (46)
| ||
| || /- C37 (32)
| /--------+| |
| | |\---+- C39 (37)
| | | |
| | | \- C38 (66)
| | |
| | |----- C13 (8)
| | |
+ | | /--- C16 (9)
| | | |
| | | /--+ / C48 (43)
| /------------+ | | \---+
| | | | /+ \ C2 (77)
| | | | ||
| | | | /-+\--- C3 (34)
| | | | | |
| | | \-+ \------- C17 (70)
| /-----------------+ | |
| | | | \----- C4 (50)
| | | |
| | | \---------------- C5 (78)
| /---+ |
| | | \------------ C99 (59)
| | |
| | \---------- C34 (82)
| |
| | /----- C78 (16)
| | |
| | | / C86 (25)
| |-+ /--------+
| | | | \-- C85 (27)
| | | |
| | \-+ / C81 (68)
| | | |
| | | |/ C90 (72)
| | \--+|
| | ||- C88 (76)
| | \+
| | \ C89 (83)
| |
| |/------ C84 (20)
| ||
| || /----- C30 (24)
| || |
| || | /- C6 (52)
| || | |
| || | |- C7 (67)
| ||---+ |
| /-+| | | C12 (55)
| | |+ | |
| | || | | C9 (88)
| | || | |
| | || \----+ C8 (89)
| | || |
| | || \ C10 (58)
| | ||
| | || /---- C40 (35)
| | |\-+
| | | \---------- C101 (41)
| | |
| | | /---------- C83 (21)
| | | |
| | |-+ /--- C93 (30)
| /-+ | \------+
| | | | \- C96 (36)
| | | |
| | | | /- C33 (28)
| | | |/-----+
| | | || \-- C94 (33)
| | | |+
| | | || /-------- C98 (71)
| | | |\--+
| | | | \------- C97 (87)
| | | |
| | | \------ C82 (62)
| /--+ |
| | | | /- C92 (31)
| | | \-----+
| | | \- C91 (69)
| | |
| | | / C19 (11)
| | | |
| | | | C18 (13)
| | | |
| | | | C20 (14)
| | | |
| | \--------+ C22 (19)
| | |
\-+ | C21 (54)
| |
| |- C23 (61)
| |
| \ C87 (26)
|
| / C11 (4)
| |
| | C25 (18)
| |
| | C28 (22)
| |
\-----+ C1 (48)
|
| C27 (73)
|
| C32 (75)
|
\- C26 (84)
|----------| 0.100 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3002 trees sampled):
50 % credible set contains 1501 trees
90 % credible set contains 2702 trees
95 % credible set contains 2852 trees
99 % credible set contains 2972 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
Running FUBAR...
[2J[H /HYPHY 2.3.14.20190214beta(MP) for Linux on x86_64\
***************** TYPES OF STANDARD ANALYSES *****************
(1) Selection Analyses
(2) Evolutionary Hypothesis Testing
(3) Relative evolutionary rate inference
(4) Coevolutionary analysis
(5) Basic Analyses
(6) Codon Selection Analyses
(7) Compartmentalization
(8) Data File Tools
(9) Miscellaneous
(10) Model Comparison
(11) Kernel Analysis Tools
(12) Molecular Clock
(13) Phylogeny Reconstruction
(14) Positive Selection
(15) Recombination
(16) Selection/Recombination
(17) Relative Rate
(18) Relative Ratio
(19) Substitution Rates
Please select type of analyses you want to list (or press ENTER to process custom batch file):[2J[H***************** FILES IN 'Selection Analyses' *****************
(1) [MEME] Test for episodic site-level selection using MEME (Mixed Effects Model of Evolution).
(2) [FEL] Test for pervasive site-level selection using FEL (Fixed Effects Likelihood).
(3) [SLAC] Test for pervasive site-level selection using SLAC (Single Likelihood Ancestor Counting).
(4) [FUBAR] Test for pervasive site-level selection using FUBAR (Fast Unconstrained Bayesian AppRoximation for inferring selection).
(5) [BUSTED] Test for episodic gene-wide selection using BUSTED (Branch-site Unrestricted Statistical Test of Episodic Diversification).
(6) [aBSREL] Test for lineage-specific evolution using the branch-site method aBS-REL (Adaptive Branch-Site Random Effects Likelihood).
(7) [RELAX] Test for relaxation of selection pressure along a specified set of test branches using RELAX (a random effects test of selection relaxation).
Please select the analysis you would like to perform (or press ENTER to return to the list of analysis types):
Analysis Description
--------------------
Perform a Fast Unbiased AppRoximate Bayesian (FUBAR) analysis of a
coding sequence alignment to determine whether some sites have been
subject to pervasive purifying or diversifying selection. v2.1
introduces two more methods for estimating the posterior distribution of
grid weights: collapsed Gibbs MCMC (faster) and 0-th order Variation
Bayes approximation (fastest). Please note that a FUBAR analysis
generates a cache and a results JSON file in the same directory as
directory as the original alignment. HyPhy needs to have write
privileges to this directory. For example if the original file is in
/home/sergei/FUBAR/data/pol.nex then at the end of a FUBAR run, there
will also exist FUBAR-generated files
/home/sergei/FUBAR/data/pol.nex.FUBAR.json,
/home/sergei/FUBAR/data/pol.nex.fubrar.cache. They also provide
checkpointing so that a partially completed analysis can be restarted.
- __Requirements__: in-frame codon alignment (possibly partitioned) and a phylogenetic tree
(one per partition)
- __Citation__: FUBAR: a fast, unconstrained bayesian approximation for inferring
selection (2013), Mol Biol Evol. 30(5):1196-205
- __Written by__: Sergei L Kosakovsky Pond
- __Contact Information__: spond@temple.edu
- __Analysis Version__: 2.1
####Choose Genetic Code
1. [**Universal**] Universal code. (Genebank transl_table=1).
2. [**Vertebrate mtDNA**] Vertebrate mitochondrial DNA code. (Genebank transl_table=2).
3. [**Yeast mtDNA**] Yeast mitochondrial DNA code. (Genebank transl_table=3).
4. [**Mold/Protozoan mtDNA**] Mold, Protozoan and Coelenterate mitochondrial DNA and the Mycloplasma/Spiroplasma code. (Genebank transl_table=4).
5. [**Invertebrate mtDNA**] Invertebrate mitochondrial DNA code. (Genebank transl_table=5).
6. [**Ciliate Nuclear**] Ciliate, Dasycladacean and Hexamita Nuclear code. (Genebank transl_table=6).
7. [**Echinoderm mtDNA**] Echinoderm mitochondrial DNA code. (Genebank transl_table=9).
8. [**Euplotid Nuclear**] Euplotid Nuclear code. (Genebank transl_table=10).
9. [**Alt. Yeast Nuclear**] Alternative Yeast Nuclear code. (Genebank transl_table=12).
10. [**Ascidian mtDNA**] Ascidian mitochondrial DNA code. (Genebank transl_table=13).
11. [**Flatworm mtDNA**] Flatworm mitochondrial DNA code. (Genebank transl_table=14).
12. [**Blepharisma Nuclear**] Blepharisma Nuclear code. (Genebank transl_table=15).
13. [**Chlorophycean mtDNA**] Chlorophycean Mitochondrial Code (transl_table=16).
14. [**Trematode mtDNA**] Trematode Mitochondrial Code (transl_table=21).
15. [**Scenedesmus obliquus mtDNA**] Scenedesmus obliquus mitochondrial Code (transl_table=22).
16. [**Thraustochytrium mtDNA**] Thraustochytrium Mitochondrial Code (transl_table=23).
17. [**Pterobranchia mtDNA**] Pterobranchia Mitochondrial Code (transl_table=24).
18. [**SR1 and Gracilibacteria**] Candidate Division SR1 and Gracilibacteria Code (transl_table=25).
19. [**Pachysolen Nuclear**] Pachysolen tannophilus Nuclear Code (transl_table=26).
>Please choose an option (or press q to cancel selection):
>Select a coding sequence alignment file (`/usr/local/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/`)
>A tree was found in the data file: `(C52,(C42,C43),((((((((((((((((((C67,C68,C63),C61,C74),C70,C60,C72),(C66,C75,C69)),(C49,C47)),C44),C55),((C35,C102),C46,C104,C106,C80)),((C14,(C59,C77,C76,C58,C56,C36),C103,C57,C100,C54),C105)),(C37,C39,C38)),(C13,((((C16,(C48,C2)),C3),C17),C4))),C5),C99),C34),(C78,((C86,C85),(C81,((C90,C88),C89)))),(C84,(C30,(((C6,C7),C12,C9,C8),C10)),(C40,C101)),(C83,(C93,C96)),((C33,C94),(C98,C97)),C82),(C92,C91)),((C19,C18,C20),((C22,C21,C23),C87))),(C11,C25,C28,C1,C27,C32,C26)))`
>Would you like to use it (y/n)?
>Loaded a multiple sequence alignment with **90** sequences, **299** codons, and **1** partitions from `/data//pss_subsets/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1.fna`
> FUBAR will write cache and result files to _/data//pss_subsets/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1.fna.FUBAR.cache_ and _/data//pss_subsets/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1.fna.FUBAR.json_, respectively
> Number of grid points per dimension (total number is D^2) (permissible range = [5,50], default value = 20, integer):
####Posterior estimation method
1. [**Metropolis-Hastings**] Full Metropolis-Hastings MCMC algorithm (slowest, original 2013 paper implementation)
2. [**Collapsed Gibbs**] Collapsed Gibbs sampler (intermediate speed)
3. [**Variational Bayes**] 0-th order Variational Bayes approximations (fastest, recommended default)
>Please choose an option (or press q to cancel selection):> The concentration parameter of the Dirichlet prior (permissible range = [0.001,1], default value = 0.5):
### Obtaining branch lengths and nucleotide substitution biases under the nucleotide GTR model
* Log(L) = -8207.64, AIC-c = 16723.87 (154 estimated parameters)
* Tree length (expected substitutions/site) for partition 1 : 1.717
### Computing the phylogenetic likelihood function on the grid
* Determining appropriate tree scaling based on the best score from a 20 x 20 rate grid
* Best scaling achieved for
* synonymous rate = 2.815
* non-synonymous rate = 0.500
* Computing conditional site likelihoods on a 20 x 20 rate grid
### Running an iterative zeroth order variational Bayes procedure to estimate the posterior mean of rate weights
* Using the following settings
* Dirichlet alpha : 0.5
### Tabulating site-level results
| Codon | Partition | alpha | beta |Posterior prob for positive selection|
|:--------------:|:--------------:|:--------------:|:--------------:|:-----------------------------------:|
| 30 | 1 | 0.353 | 2.677 | Pos. posterior = 0.9934 |
| 42 | 1 | 0.912 | 2.906 | Pos. posterior = 0.9003 |
| 72 | 1 | 0.463 | 7.385 | Pos. posterior = 0.9992 |
----
## FUBAR inferred 3 sites subject to diversifying positive selection at posterior probability >= 0.9
Of these, 0.11 are expected to be false positives (95% confidence interval of 0-1 )
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.19 sec, SCORE=999, Nseq=90, Len=299
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_12 --------------------------MKYVLFILACIIACVYGE--RYCA
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_19 ---------------------------MKILLILACVIACACGE--RYCA
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_18 ---------------------------MKILLILACVIACACGE--RYCA
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 MPMMPIRISCELKHTTPTKHSLFELNKMKILLVLACAIACVYGE--RYCA
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 ---------------------------MKILLILACAIACACGE--RYCA
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 ---------------------------MKILLILACAIACACGE--RYCA
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 --------------------------MKYILFLLACIIACVYGE--RYCA
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1 --------------------------MMKILLI-ACAIACAYGE--RYCA
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 --------------------------MKYILFLLACIIACVYGE--RYCA
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 ---------------------------MKILLILACAIACACGE--RYCA
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 ---------------------------MKILLILACAMACACGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_11 --------------------------MKYILLILACIIACVYGE--RYCA
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 ---------------------------MKILLILACAIACACGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_14 ---------------------------MKILLILACVIACACGE--RYCA
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 ---------------------------MKILLILACAIACACGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_13 ---------------------------MKILLLLACAIACVCGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_16 ---------------------------MKILLVLACAIACACGE--RYCA
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 ---------------------------MKILLILACAMACACGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_19 --------------------------MKYVLLMFACIIACVCGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_18 --------------------------MKYVLLMFACIIACVCGE--RYCA
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_10 --------------------------MKYVLLMFACIIACVCGE--RYCA
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 ---------------------------MKILLILACVIACACGE--RYCA
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 --------------------------MKYILFILACIIACAFGE--RYCA
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 ---------------------------MKILLILACVIACACGE--RYCA
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_15 --------------------------MKYILLILACIIACVYGE--RYCA
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_12 --------------------------MKYVLLMFACIIACVCGE--RYCA
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 --------------------------MKYVLLILACIIACVFGE--RYCA
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 --------------------------MKYILLTFACMIACVYGE--RYCA
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_18 --------------------------MKYILLILACIIACVYGE--RYCA
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 --------------------------MKYVLLILACIIACVCGE--RYCA
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 --------------------------MKHVLFLLACIIACVCGE--RYCA
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 --------------------------MKYVLLMFACIIACVCGE--RYCA
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 --------------------------MRHVLFLLACIIACVCGE--RYCA
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 --------------------------MKYVLFLLACIIACAFGE--RYCA
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 ---------------------------MKILLILACVIACACGE--RYCA
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 --------------------------MKYILFLLACTISFVYGK--RYCA
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 --------------------------MKYVLFIFACIIACVYGE--RYCA
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 -----------------MKHSSFELNKMKILLILACAVACVYGEQIRYCA
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 --------------------------MKYVLFLLACIIACVFGE--RYCA
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 --------------------------MKYILLILACVIACVYGE--RYCA
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 --------------------------MKYILFLFACIIACVYGE--RYCA
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 -----------------MKHSSFELNKMKILLILACAVACVYGEQIRYCA
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 --------------------------MKYILLTLACIVACVYGE--RYCA
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 ---------------------------MKILLILACAIACACGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_102 ---------------------------MKILLILACVIACACGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_101 --------------------------MKYILFLLACVIASVYGE--RYCA
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 ---------------------------MKILLILACVIACACGE--RYCA
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 ---------------------------MKILLILACAIACACGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_104 ---------------------------MKILLILACVIACACGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_105 ---------------------------MKILLILACVIACACGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_103 ---------------------------MKILLILACVIACACGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCA
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 ---------------------------MKVLLILACVIACACGE--RYCA
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 MPMMPIRISCELKHTTLKKHSLFELNKMKILLILACAIACVYGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_106 ---------------------------MKILLILACVIACACGE--RYCA
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 --------------------------MKYILFLLACIIACVYGE--RYCA
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_16 ---------------------------MKILLILACVIACACGE--RYCA
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_11 --------------------------MKYVLLMFACIIACVCGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_12 --------------------------MKYILFLLACIIACVYGE--RYCA
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 ---------------------------MKILLILACVIACACGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_10 --------------------------MKYILFLLACIIACVYGE--RYCA
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 MLTMPIRISCELKHTTPMKHSLFELNKMKILLILACAVACVYGEQIRYCA
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 ---------------------------MKILLILACAMACACGE--RYCA
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_13 --------------------------MKYVLLMFACIIACVCGE--RYCA
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 --------------------------MKYLLFIFVCIIARVYGE--RYCA
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_17 ---------------------------MKILLILACVIACACGE--RYCA
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 ---------------------------MKILLILACAIVCACGE--RYCA
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_15 ---------------------------MKILLILACAIVCTYGE--RYCA
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 -----------------MKHSSFELNKMKILLILACAVACVYGEQIRYCA
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 --------------------------MKHVLFIFACIIACAFGE--RYCA
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 --------------------------MKYVLFIFACIIACVYGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_17 ---------------------------MKVLLMLACVFACVYGD--RYCA
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 --------------------------MKYVLFVFACIIACVFGE--RYCA
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 --------------------------MKHVLFIFACIIACAFGE--RYCA
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_17 --------------------------MKYILLILACIIACVYGE--RYCA
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_100 ---------------------------MKILLILACVIACACGE--RYCA
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 --------------------------MKYILLILACIIACVYGE--RYCA
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 --------------------------MKYVLFIFACIIACAFGE--RYCA
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1 MPMMPIRILCELKHITLMKHSLFELNKMKILLILACAIACACGE--RYCA
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 --------------------------MKYILLTLACIVACVYGE--RYCA
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 ---------------------------MKILLILACAIACACGE--RYCA
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_14 MLTMPIRILCELKHTTPMEHSLLELNKMKILLILACVIACACGE--RYCA
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 --------------------------MKYVLFIFACIIACVCGE--RYCA
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 --------------------------MKHVLFIFACIIACAFGE--RYCA
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_16 --------------------------MKYILLILACIIACVYGE--RYCA
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 ---------------------------MKILLILACALACACGE--RYCA
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 ---------------------------MKILLILACVIACACGE--RYCA
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 --------------------------MKYVLLILACIIACVFGE--RYCA
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 --------------------------MKYILFLLACIIACVYGE--RYCA
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 ---------------------------MKILLILACAIACACGE--RYCA
:*: .* . . *. ****
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_12 MQ-DDSLQ-CV----NGTD-SSCRTCFERGDLIWHLANWNFSWSVILI--
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_19 MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_18 MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 MQ-ETGLS-CR----NST--NDCESCFNGGDLIWHLANWNFSWSIILI--
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI--
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI--
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MQSATSTS-CI----NGTDHNSCQTCFERGDLIWHLANWNFSWSVILI--
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1 MSDESSSTSCR----NSTSGDTCASCINSGDLIWHLANWNFSWSVILI--
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MQSATSTS-CI----NVTDHNSCQTCFERGDLIWHLANWNFSWSVILI--
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI--
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI--
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_11 MQ-DSGLQ-CI----NGTN-SRCQTCFERGDLIWHLANWNFSWSVILI--
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI--
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_14 MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI--
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_13 MQ-DTGFS-CR----NSST-TDCESCFNGGDLIWHLANWNFSWSIILI--
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_16 MKSDSDTS-CR----NGTT-TDCESCFNGGDLIWHLANWNFSWSVILI--
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI--
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_19 MQGASTS--CI----NGTN-SECQTCFERGDLIWHLANWNFSWSVILI--
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_18 MQGASTS--CI----NGTN-SECQTCFERGDLIWHLANWNFSWSVILI--
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_10 MQGASTS--CI----NGTN-SECQTCFERGDLIWHLANWNFSWSVILI--
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 MQDQSSIT-CI----NGTD-SSCQTCFERGDLIWHLANWNFSWSVILI--
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_15 MQ-DSGLQ-CI----NGTN-SRCQTCFERGDLIWHLANWNFSWSVILI--
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_12 MQGASTS--CI----NGTN-SECQTCFERGDLIWHLANWNFSWSVILI--
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 MQDVQPTS-CI----NGTV-NSCQTCFERGDLIWHLANWNFSWSVILI--
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 MQSDSSTT-CV----NETG-GRCQTCFERGDLIWHLANWNFSWSVILI--
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_18 MQ-DSGLQ-CI----NGTN-SRCQTCFERGDLIWHLANWNFSWSVILI--
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 MQY-HSTS-CI----NGTETNSCQTCFERGDLIWHLANWNFSWSVILI--
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 MQSIESTS-CI----NRTE-TQCQTCFERGDLIWHLANWNFSWSVILI--
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 MQGASTS--CI----NGTN-SECQTCFERGDLIWHLANWNFSWSVILI--
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 MQSSEPTR-CI----YGTE-TQCQTCFERGDLIWHLANWNFSWSVILI--
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 MQHAPSTS-CI----NDTD-STCQTCFERGDLIWHLANWNFSWSVILI--
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 MKDDTGLS-CR----NSTA-SDCESCFNGGYLIWHLANWNFSWSIILI--
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 MQDLNSTS-C-----DGTD-DQCQTCFERGDLIWHLANWNFSWSVILI--
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 MKDDNPMS-CI----NGTD-SQCRTCFERGDLIWHLANWNFSWSVILI--
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 MQ-ETGLS-CR----NGTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 MKIHQPTS-CI----NGTD-STCQTCFERGDLIWHLANWNFSWSVILI--
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 MQDEQSTS-CI----NGTGSQLCQTCFERGDLIWHLANWNFSWSVILI--
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 MQDVNSMS-CV----NGTN-NQCQTCFERGDLIWHLANWNFSWSVILI--
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 MQ-ETGLS-CR----NGTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 MQ-PDGLQ-CV----NHTD-SSCQTCFERGDLIWHLANWNFSWSVILI--
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 MQ-ETGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI--
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_102 MKDDTGLS-CR----NSTA-SDCESCFNGGYLIWHLANWNFSWSIILI--
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_101 MQGALSTS-CI----NGTT-NPCQTCFERGDLIWHLANWNFSWSVILI--
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 MKDDTGLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 MKSDSETS-CR----NSTA-TDCESCFNGGDLIWHLANWNFSWSIILI--
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_104 MKDDTGLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILIIF
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_105 MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_103 MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1 MQ-DSGLQ-CI----NGTN-SRCQTCFERGDLIWHLANWNFSWSVILI--
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 MQ-DTGFS-CR----NSTV-SDCELCFNGGDLIWHLANWNFSWSIILI--
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 MQDDSGTS-CR----NSS--STCESCFNGGDLIWHLANWNFSWSIILI--
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_106 MKDDTGLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MQSATSTS-CI----NGTDHNSCQTCFERGDLIWHLANWNFSWSVILI--
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_16 MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_11 MQGASTS--CI----NGTN-SECQTCFERGDLIWHLANWNFSWSVILI--
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_12 MQSATSTS-CI----NGTDHNSCQTCFERGDLIWHLANWNFSWSVILI--
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSRSIILI--
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_10 MQSANSTS-CI----NGTDHNSCQTCFERGDLIWHLANWNFSWSVILI--
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 MQ-ETGLS-CR----NGTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 MQ-DTGLS-CR----NSTV-SACESCFNGGDLIWHLANWNFSWSIILI--
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_13 MQGASTS--CI----NGTN-SKCQTCFERGDLIWHLANWNFSWSVILI--
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 MQKDAPIT-CI----NDTD-STCQTCFERGDLIWHLANWNFSWSVILI--
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_17 MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI--
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_15 MKDDNGLS-CR----NSTA-SDCDACFNKGDLIWHLANWNFSWSIILI--
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 MQ-ETGLS-CR----NGTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 MQDAQSTT-CI----NGTESNSCQTCFERGDLIWHLANWNFSWSVILI--
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 MQDDNLTS-CI----TGTD-SKCQTCFERGDLIWHLANWNFSWSVILI--
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_17 MQADSGITQCRAQTLNGTN-SECESCFNGGDLIWHLANWNFSWSIILI--
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 MHESPSTQ-CI----NGTDSQPCQTCFERGDLIWHLANWNFSWSVILI--
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 MQDARSTT-CI----NGTESGSCQTCFERGDLIWHLANWNFSWSVILI--
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_17 MQ-DSGLQ-CI----NGTN-SRCQTCFERGDLIWHLANWNFSWSVILI--
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_100 MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 MQ-DSGLQ-CI----NGTN-SRCQTCFERGDLIWHLANWNFSWSVILI--
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 MQEAKSTT-CI----NGTEPGSCQTCFERGDLIWHLANWNFSWSVILI--
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1 MKSDSETS-CR----NSTA-TDCESCFNGGDLIWHLANWNFSWSIILI--
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 MQ-PDGLQ-CV----NHTD-SSCQTCFERGDLIWHLANWNFSWSVILI--
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI--
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_14 MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWSFSWSIILI--
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 MQDTPLLT-CK----NATA-DTCETCFERGDLIWHLANWNFSWSVILI--
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 MQDARSTT-CI----NGTESDSCQTCFERGDLIWHLANWNFSWSVILI--
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_16 MQ-DSGLQ-CI----NGTN-SRCQTCFERGDLIWHLANWNFSWSVILI--
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 MQ-YTGLS-CR----NSTV-SDCELCFNGGDLIWHLANWNFSWSIILI--
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 MKDDTGLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI--
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 MRGESSMT-CI----NGTESNTCQTCFEHGDLIWHLANWNFSWSVILI--
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MQSATSTS-CI----NGTDHNSCQTCFERGDLIWHLANWNFSWSVILI--
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI--
* * : * *:: * ********.** *:***
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_12 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_19 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_18 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_11 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_14 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_13 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_16 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_19 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_18 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_10 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYNVSRYV
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_15 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_12 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_18 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYKVSRYV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 IFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 IFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 VFITVLKYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 VFITVLQYGRPQFSWIVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTTFNAYSEYEVSRYV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTTFNAYSEYEVSRYV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 VFIAVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_102 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_101 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_104 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_105 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_103 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_106 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_16 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_11 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_12 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_10 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_13 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_17 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_15 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPLVLALTIFNAYSEYQVSRYV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTTFNAYSEYEVSRYV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 IFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_17 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 AFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 IFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_17 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_100 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 IFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 VFIAVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_14 VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 VFITVLQYGRPQFSWLVYGIKMLIMWLMWPIVLALTIFNAYAEYEVSRYV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 IFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_16 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFKAYSEYQVSRYV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 IFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV
**:**:********:***********:**:***** *:**:**:*****
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_12 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKTWWSFNPETNAILCVNALG
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_19 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_18 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 MFGFSVAGAIVTFILWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1 MFGFSIAGAVITFALWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_11 MFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALG
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_14 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_13 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_16 MFGFSVAGAIVTFILWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_19 MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_18 MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_10 MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 MFGFSVAGAIVTFALWVMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_15 MFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALG
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_12 MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 MFGFSVAGAVITFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALG
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_18 MFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALG
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNVLG
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 MFGFSIAGAVVTFALWLMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 MFGFSIVGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 MFGFSVAVAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 MFGFSIAGAIITFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 MFGFSIAGAIITFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 MFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 MFSFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_102 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_101 MFGFSVAGAVITFALCMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 MFGFSVAGAIVTFILWIMYFIRSIQLYRRTKSWWSFNPETNAILCVSALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_104 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_105 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_103 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1 MFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALG
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_106 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_16 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_11 MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_12 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_10 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_13 MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_17 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_15 MFGFSIAGAIVTVVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 MFGFSIAGAIITFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 MFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_17 MFGFSVAGAIVTFILWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 MFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNVLG
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 MFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_17 MFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALG
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_100 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 MFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALG
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 MFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSCWSFNPETNAILCVNALG
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1 MFGFSVAGAIVTFILWIMYFIRSIQLYRRTKSWWSFNPETNAILCVSALG
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 MFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_14 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 MFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_16 MFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALG
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 MFGFSIAGAIVTFALWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG
**.**:. *::*. * :***:**:*******: *******:*****..**
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_12 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_19 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_18 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1 RSYVLPLEGTPTGVTLTLLSGNLYAEGFKMAGGMNIEHLPKYVMVALPSR
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_11 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_14 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_13 RNYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_16 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_19 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_18 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSR
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_10 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSR
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIDHLPKYVMIATPSR
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_15 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_12 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSR
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 RRYVLPLDGTPTGITLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_18 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMSGGLTIEHLPKYVMIATPSR
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMTGGLTIEHLPKYVMIATPSR
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSR
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMTGGLTIEHLPKYVMIATPSR
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_102 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_101 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_104 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_105 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_103 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 RSYVLPLEGLPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_106 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_16 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_11 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_12 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_10 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIL----
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_13 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSR
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_17 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNLDNLPKYVMVALPSR
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_15 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVASPSR
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_17 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIDHLPKYVMIATPSR
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_17 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_100 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_14 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 RNYVLPLDGTPTGVTLTLLSGNLYAEGFKMSGGLTIEHLPKYVMIATPSR
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_16 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 RSYVLHLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 RSYVLPLGGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIDHLPKYVMIATPSR
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR
* *** * * ***:***************::**:.:::******:
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_12 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_19 TIVYILVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_18 TIVYILVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1 TIVYTLVGKQLKASSATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_11 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_14 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQDKLLHMV
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_13 TIVYTLVGKQLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_16 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_19 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_18 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_10 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 TIVYILVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 TIVYILVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_15 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_12 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHERLLHMV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_18 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 TIVYTLVGKQLKVTTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_15 TFVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_15 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 TIVYTLVGKQLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_10 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_16 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 TIVYTLVGKQLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_102 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_101 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_104 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_105 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_103 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_19 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_106 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_16 TIVYILVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_11 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHERLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_12 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_16 TIVYILVGKKLKASSATGWAYYVKSKAGDYSAEARTDNLSEQEKLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_10 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 ---------RLIEPSFTH-------------------------------
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_13 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHERLLHMV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_17 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_12 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_15 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_18 TIVYTLVGKQLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_11 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_17 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_17 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_100 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_12 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_18 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_13 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_13 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_14 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_14 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_19 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_16 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_17 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEVRTDNLSEQEKLLHMV
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_10 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_17 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_14 TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
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>RM_NA_ACT10859_1_2002_01_28_USA_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGTTCATACTCGCGTGCATAATTGCATGCGTTTATGGTGAG------CGTTACTGTGCTATGCAA---GATGATAGCTTGCAG---TGTGTT------------AATGGCACAGAC---TCATCTTGTCGAACTTGCTTTGAACGTGGTGATCTTATTTGGCATCTAGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTGCAATATGGCAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTACTTTGGCCTATTGTTTTAGCACTTACGATTTTTAATGCCTACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACATTTGCACTCTGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAAACATGGTGGTCTTTTAATCCTGAAACTAATGCAATTCTTTGTGTTAACGCTTTGGGTAGAAGTTATGTTCTACCCCTTGACGGTACACCAACGGGTGTCACTCTCACTCTGCTTTCAGGAAATCTATATGCTGAAGGTTTTAAGATGGCTGGTGGTCTTACCATCGAGCATTTGCCTAAATATGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >TGEV_USA_HB_1988_M_ASV64290_1_1988_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAATCCGATACAGATTTGTCA---TGTCGC------------AATAGTACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCGTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAAAGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACTATTGTCTACATACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >TGEV_Mex_145_2008_M_ASV64362_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAATCCGATACAGATTTGTCA---TGTCGC------------AATAGTACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCGTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAAAGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACTATTGTCTACATACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 ATGCCTATGATGCCTATAAGAATTTCATGCGAATTAAAGCATACAACCCCGACGAAGCACTCCTTGTTTGAACTAAACAAAATGAAGATTTTGTTAGTATTAGCGTGTGCAATTGCATGCGTTTATGGAGAA------AGGTACTGTGCTATGCAA---GAAACAGGTCTTTCT---TGTCGT------------AACAGCACC------AATGATTGTGAATCATGCTTCAATGGAGGTGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACGGTTTTACAATATGGTAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATTATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAATTGTTACATTTATACTTTGGATTATGTATTTTGTTAGATCTATTCAGTTATACAGAAGGACAAAGTCTTGGTGGTCTTTCAACCCTGAAACTAACGCAATTCTTTGCGTTAGTGCATTAGGAAGGAGCTATGTGCTTCCTCTTGAAGGTGTGCCAACTGGTGTCACTTTAACATTGCTCTCAGGGAATTTGTATGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTGCCAAAGTACGTAATGGTTGCACTACCTAGCAGGACCATTGTCTACACACTTGTTGGTAAGAAATTGAAAGCAAGTAGTGCAACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGATGCACGAACTGACAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >TGEV_USA_Illinois139_2006_M_ASV64308_1_2006_11_17_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTGGCGTGTGCGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTCATGCTTCAACGGGGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGCTATACAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCTGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTCAAAATTGCTGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCATTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >TGEV_USA_Illinois146_2008_M_ASV64371_1_2008_04_09_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTGGCGTGTGCGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTCATGCTTCAACGGGGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGCTATATAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCTGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTCAAAATTGCTGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCATTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGTTCTTACTTGCGTGCATAATTGCATGCGTTTATGGAGAA------CGTTATTGTGCCATGCAAAGTGCAACTTCTACAAGC---TGCATT------------AATGGCACTGACCACAACTCATGTCAAACTTGCTTCGAACGTGGTGATCTTATTTGGCATCTCGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATACGGCAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCGTACTCTGAGTACGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCATTATGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAGACTAATGCAATTCTCTGTGTTAATGCGTTGGGTAGAAGCTACGTCCTACCCCTTGATGGCACTCCTACGGGTGTCACTCTCACGTTACTTTCAGGAAACCTATATGCTGAAGGGTTTAAAATGGCTGGTGGTCTTACCATCGAGCACTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACCTTAGTTGGAAAACAGTTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTA >23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGATGAAAATTTTGTTGATT---GCGTGTGCAATTGCATGCGCTTATGGAGAA------CGCTATTGTGCTATGAGTGATGAAAGTTCATCCACTTCTTGTCGC------------AATAGTACCAGTGGAGATACTTGTGCTTCATGTATTAACAGTGGTGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTGTAATATTGATT------ATTTTTATAACAGTGTTACAATATGGAAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTTATTATGTGGCTACTTTGGCCCATTGTTTTAGCTCTTACGATTTTTAATGCATACTCGGAATATGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTATCGCAGGTGCAGTTATTACATTTGCACTTTGGATTATGTATTTTGTAAGATCTATTCAGCTATATAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAATGCAATTCTTTGTGTTAGTGCGCTTGGAAGAAGCTATGTGCTTCCTCTTGAAGGTACACCAACTGGTGTCACTCTTACTTTGCTATCAGGAAATCTTTATGCTGAAGGATTTAAAATGGCTGGTGGAATGAACATCGAGCATTTACCAAAATACGTAATGGTCGCATTACCTAGTAGAACTATTGTCTACACACTTGTTGGAAAGCAATTGAAAGCAAGTAGTGCAACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCAAGAACTGACAATTTGAGTGAACATGAAAAATTATTACATATGGTA >28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGTTCTTACTTGCGTGCATAATTGCATGCGTTTATGGAGAA------CGTTATTGTGCCATGCAAAGTGCAACTTCTACAAGC---TGCATC------------AATGTCACTGACCACAACTCATGTCAAACTTGCTTCGAACGTGGTGATCTTATTTGGCATCTCGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATACGGCAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCGTACTCTGAGTACGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCATTATGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAGACTAATGCAATTCTCTGTGTTAATGCGTTGGGTAGAAGCTACGTCCTACCCCTTGATGGCACTCCTACGGGTGTCACTCTCACGTTACTTTCAGGAAACCTATATGCTGAAGGGTTTAAAATGGCTGGTGGTCTTACCATCGAGCACTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACCTTAGTTGGAAAACAGTTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTA >TGEV_USA_Minnesota148_2013_M_ASV64388_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTGGCGTGTGCGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTCATGCTTCAACGGGGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGCTATATAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCTGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTCAAAATTGCTGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCACTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >TGEV_USA_Minnesota152_2014_M_ASV64424_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTGGCGTGTGCGATGGCATGCGCATGTGGGGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGCTATACAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCAGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTCAAAATTGCCGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCATTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >79_1146_M_YP_004070198_1_NA_USA_Unknown_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGCTAATACTCGCGTGCATAATTGCATGCGTTTATGGTGAA------CGCTACTGTGCCATGCAA---GACAGTGGCTTGCAG---TGTATT------------AATGGCACAAAT---TCAAGATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTGTTCAGCTATATAGAAGAACCAAATCATGGTGGTCTTTTAATCCTGAGACTAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTGCTTCCCTTAGATGGTACTCCTACAGGTGTTACCCTTACTCTACTTTCAGGAAATCTATATGCTGAAGGTTTCAAAATGGCTGGTGGTTTAACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTACGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGACAATTTGAGTGAACATGAAAAATTATTACATATGGTG >TGEV_USA_Minnesota150_2013_M_ASV64406_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTGGCGTGTGCGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTCATGTTTCAACGGGGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGCTATATAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCTGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTCAAAATTGCTGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCACTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >AYU_NA_AEM55570_1_2009_China_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAATCCGATACAGATTTGTCA---TGTCGC------------AATAGTACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCGTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAAAGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACTATTGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGATAAATTATTACATATGGTA >TGEV_USA_NorthCarolina142_2007_M_ASV64335_1_2007_02_16_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTGGCGTGTGCGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTCATGCTTCAACGGGGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGCTATACAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCTGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTCAAAATTGCTGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCATTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTACTATTAGCGTGTGCAATTGCATGCGTTTGTGGAGAA------AGGTACTGTGCTATGCAA---GACACTGGTTTTTCT---TGCCGT------------AACAGCAGTACC---ACTGATTGTGAGTCATGCTTCAATGGAGGTGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACGGTTCTACAATATGGTAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTCATTATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCTGAATACGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTTTGGATTATGTATTTTGTAAGATCCATTCAGTTATACAGAAGGACTAAGTCTTGGTGGTCCTTCAACCCTGAGACTAATGCAATTCTTTGCGTTAGTGCTTTAGGAAGAAACTACGTGCTTCCTCTTGAAGGTGTGCCAACTGGTGTCACTTTAACATTGCTTTCAGGGAATTTGTATGCTGAAGGTTTTAAAATTGCTGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACCATTGTCTACACACTTGTTGGCAAGCAATTGAAAGCAAGTAGTGCAACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGATGCAAGAACTGACAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >CB_05_ORF5_AKA65834_1_2005_Italy_Dog_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAGTATTAGCGTGTGCAATTGCATGCGCATGTGGTGAA------CGTTATTGCGCTATGAAATCTGACTCAGATACTTCG---TGTCGC------------AATGGTACCACT---ACTGATTGCGAATCATGCTTCAACGGAGGTGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTGTAATATTGATC------GTTTTTATAACGGTTTTACAATATGGTAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTTATTATGTGGCTACTATGGCCCATTGTTCTGGCTCTTACGATTTTTAATGCATACTCGGAATACGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAATTGTTACATTTATACTTTGGATTATGTATTTTGTTAGATCCATTCAGTTATACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAACGCAATTCTTTGCGTTAGTGCATTAGGAAGGAGCTATGTGCTTCCTCTTGAAGGTGTGCCAACTGGTGTCACTTTAACATTGCTCTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTGCCAAAGTACGTAATGGTTGCATTACCTAGCAGGACCATTGTCTACACACTTGTTGGTAAGAAATTGAAAGCAAGTAGTGCAACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGATGCACGAACTGACAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >TGEV_USA_Wisconsin151_2014_M_ASV64415_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTGGCGTGTGCGATGGCATGCGCATGTGGGGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGCTATACAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCAGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTCAAAATTGCCGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCATTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >Cat1_day28_withoutdeletion_NA_AMD11202_1_2013_Belgium_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGCTCATGTTCGCGTGCATAATTGCATGCGTTTGTGGTGAA------CGATACTGTGCCATGCAAGGTGCAAGTACAAGC------TGCATC------------AATGGCACCAAT---TCAGAATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCCGTAATATTGATC------GTTTTTATAACAGTTTTACAATATGGAAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCCGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTCATAACGTTTGCACTCTGGATGATGTATTTTGTGAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTCAACCCTGAAACTAATGCAATTCTTTGTGTTAACGCACTGGGTAGAAGTTATGTTTTACCCCTTGATGGCACTCCTACAGGTGTCACTCTTACTTTGCTTTCAGGAAATCTATATGCTGAAGGTTTTAAGATGGCTGGTGGTCTTACCATCGAGCAATTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAATTAAAAGCAACTACTGCTACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >Cat1_day28_deletion_NA_AMD11191_1_2013_Belgium_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGCTCATGTTCGCGTGCATAATTGCATGCGTTTGTGGTGAA------CGATACTGTGCCATGCAAGGTGCAAGTACAAGC------TGCATC------------AATGGCACCAAT---TCAGAATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCCGTAATATTGATC------GTTTTTATAACAGTTTTACAATATGGAAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCCGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTCATAACGTTTGCACTCTGGATGATGTATTTTGTGAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTCAACCCTGAAACTAATGCAATTCTTTGTGTTAACGCACTGGGTAGAAGTTATGTTTTACCCCTTGATGGCACTCCTACAGGTGTCACTCTTACTTTGCTTTCAGGAAATCTATATGCTGAAGGTTTTAAGATGGCTGGTGGTCTTACCATCGAGCAATTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAATTAAAAGCAACTACTGCTACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >Cat1_day7_NA_AMD11147_1_2013_Belgium_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGCTCATGTTCGCGTGCATAATTGCATGCGTTTGTGGTGAA------CGATACTGTGCCATGCAAGGTGCAAGTACAAGC------TGCATC------------AATGGCACCAAT---TCAGAATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCCGTAATATTGATC------GTTTTTATAACAGTTTTACAATATGGAAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCCGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTCATAACGTTTGCACTCTGGATGATGTATTTTGTGAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTCAACCCTGAAACTAATGCAATTCTTTGTGTTAACGCACTGGGTAGAAGTTATGTTTTACCCCTTGATGGCACTCCTACAGGTGTCACTCTTACTTTGCTTTCAGGAAATCTATATGCTGAAGGTTTTAAGATGGCTGGTGGTCTTACCATCGAGCAATTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAATTAAAAGCAACTACTGCTACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >TH_98_NA_AML22781_1_1998_02_10_China_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAATCCGATACAGATTTGTCA---TGTCGC------------AATAGTACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCGTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAAAGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACTATTGTCTACATACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >UG_FH8_NA_ASU62493_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGTTCATACTCGCGTGCATAATTGCATGTGCTTTTGGAGAA------CGTTACTGTGCTATGCAAGATCAATCATCCATTACT---TGCATC------------AATGGCACTGAT---TCTTCATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCCATCGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTATAATGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAATTGTAACGTTTGCACTTTGGGTGATGTATTTTGTGAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAGACCAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTACTACCTCTTGATGGCACTCCTACGGGTGTGACTCTCACTCTACTTTCAGGAAATCTATATGCTGAAGGCTTTAAAATGGCTGGTGGTCTTACCATCGACCATTTACCTAAATACGTCATGATTGCTACGCCTAGTAGAACCATCGTTTACACATTAGTTGGAAAACAATTAAAAGCAACTACTGCCACGGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTA >TGEV_USA_Z_1986_M_ASV64281_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAATCCGATACAGATTTGTCA---TGTCGC------------AATAGTACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCGTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAAAGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACTATTGTCTACATACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >DF_2_M_AFH55125_1_NA_NA_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGCTAATACTCGCGTGCATAATTGCATGCGTTTATGGTGAA------CGCTACTGTGCCATGCAA---GACAGTGGCTTGCAG---TGTATT------------AATGGCACAAAT---TCAAGATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTGTTCAGCTATATAGAAGAACCAAATCATGGTGGTCTTTTAATCCTGAGACTAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTGCTTCCCTTAGATGGTACTCCTACAGGTGTTACCCTTACTCTACTTTCAGGAAATCTATATGCTGAAGGTTTCAAAATGGCTGGTGGTTTAACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTACGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGACAATTTGAGTGAACATGAAAAATTATTACATATGGTG >Cat2_day21_withoutdeletion_NA_AMD11169_1_2013_Belgium_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGCTCATGTTCGCGTGCATAATTGCATGCGTTTGTGGTGAA------CGATACTGTGCCATGCAAGGTGCAAGTACAAGC------TGCATC------------AATGGCACCAAC---TCAGAATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCCGTAATATTGATC------GTTTTTATAACAGTTTTACAATATGGAAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCCGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTCATAACGTTTGCACTCTGGATGATGTATTTTGTGAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTCAACCCTGAAACTAATGCAATTCTTTGTGTTAACGCACTGGGTAGAAGTTATGTTTTACCCCTTGATGGCACTCCTACAGGTGTCACTCTTACTTTGCTTTCAGGAAATCTATATGCTGAAGGTTTTAAGATGGCTGGTGGTCTTACCATCGAGCAATTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAATTAAAAGCAACTACTGCTACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAGATTATTACATATGGTG >UU16_NA_ACT10931_1_2007_06_07_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGTTGATACTCGCGTGCATAATTGCATGCGTCTTTGGAGAG------CGTTACTGTGCCATGCAAGATGTACAACCCACAAGT---TGCATC------------AATGGCACCGTT---AATTCATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTTATACTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTATAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTGTTCAGTTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAAACCAATGCAATTCTTTGTGTCAATGCATTGGGTAGAAGATATGTTCTTCCCCTTGATGGCACTCCTACGGGTATCACTCTTACTTTACTTTCAGGAAATCTATATGCTGAAGGCTTTAAAATGGCTGGTGGTCTTACCATCGAGCATTTACCTAAATATGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTGGTTGGAAAACAATTAAAAGCAACCACTGCCACGGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >UU15_NA_ACT10921_1_2007_07_13_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGCTAACATTTGCGTGCATGATTGCATGCGTCTATGGGGAG------CGTTATTGCGCTATGCAAAGCGACTCTTCCACGACT---TGCGTC------------AATGAAACAGGT---GGCAGATGTCAAACCTGCTTCGAGCGTGGTGATCTTATTTGGCATCTCGCTAACTGGAACTTCAGCTGGTCTGTAATACTGATT------GTTTTTATAACAGTACTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGTATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTTTAGCTCTTACGATTTTTAATGCATATTCGGAGTATCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTATGGATGATGTATTTTGTGAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAAACCAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTTCTACCTTTAGATGGCACACCAACGGGTGTCACTCTCACTCTACTCTCAGGAAACCTATATGCTGAAGGTTTTAAAATGGCTGGTGGTCTTACCATCGAGCATTTGCCTAAATATGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >FCoVWSU791146_P50_M_AGZ84541_1_2011_USA_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGCTAATACTCGCGTGCATAATTGCATGCGTTTATGGTGAA------CGCTACTGTGCCATGCAA---GACAGTGGCTTGCAG---TGTATT------------AATGGCACAAAT---TCAAGATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTGTTCAGCTATATAGAAGAACCAAATCATGGTGGTCTTTTAATCCTGAGACTAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTGCTTCCCTTAGATGGTACTCCTACAGGTGTTACCCTTACTCTACTTTCAGGAAATCTATATGCTGAAGGTTTCAAAATGGCTGGTGGTTTAACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTACGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGACAATTTGAGTGAACATGAAAAATTATTACATATGGTG >FCoV_C1Je_NA_ABI14450_1_NA_NA_Unknown_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGTTAATATTAGCGTGCATAATTGCATGCGTTTGTGGTGAA------CGATACTGTGCTATGCAATAT---CACTCCACAAGC---TGCATC------------AACGGCACTGAAACAAACTCATGTCAAACCTGCTTCGAACGTGGTGATCTTATTTGGCATCTCGCTAACTGGAACTTCAGCTGGTCTGTGATACTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTACTATGGCCTATTGTTCTAGCACTTACGATTTTTAATGCGTACTCTGAGTACAAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCATTATGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAGACTAATGCAATTCTTTGTGTTAATGTGTTGGGTAGAAGTTACGTTCTACCACTTGATGGCACTCCTACGGGTGTCACTCTCACGTTACTTTCAGGAAATCTATATGCTGAAGGGTTTAAAATGTCTGGTGGTCTTACCATCGAGCATTTGCCTAAATATGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGTAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACTGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >UU19_NA_ADO39833_1_2007_08_23_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGCACGTTTTGTTCTTACTTGCGTGCATAATTGCATGCGTTTGTGGCGAA------CGATACTGTGCCATGCAGAGTATCGAATCCACAAGC---TGCATT------------AATAGAACTGAA---ACTCAATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------ATCTTTATAACAGTGCTACAATATGGTAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTATCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAGTTGTAACGTTTGCACTTTGGCTGATGTATTTTGTTAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAAACCAATGCAATCCTTTGCGTTAATGCACTGGGTAGAAGTTATGTACTTCCTCTTGATGGCACTCCTACGGGTGTGACTCTAACTCTACTTTCAGGAAATCTATATGCTGAAGGGTTTAAAATGACTGGTGGTCTCACCATCGAACATTTACCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTGGTTGGAAAACAATTAAAAGCTACCACTGCTACGGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >UU2_NA_ACT10953_1_1993_03_30_USA_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGCTCATGTTCGCGTGCATAATTGCATGCGTTTGTGGTGAA------CGATACTGTGCCATGCAAGGTGCAAGTACAAGC------TGCATC------------AATGGCACCAAC---TCAGAATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCCGTAATATTGATC------GTTTTTATAACAGTTTTACAATATGGAAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCCGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTCATAACGTTTGCACTCTGGATGATGTATTTTGTGAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTCAACCCTGAAACTAATGCAATTCTTTGTGTTAACGCACTGGGTAGAAGTTATGTTTTACCCCTTGATGGCACTCCTACAGGTGTCACTCTTACTTTGCTTTCAGGAAATCTATATGCTGAAGGTTTTAAGATGGCTGGTGGTCTTACCATCGAGCAATTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAATTAAAAGCAACTACTGCTACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >UU17_NA_ADL71449_1_2007_07_17_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAGGCACGTTTTGTTCTTACTTGCGTGCATAATTGCATGCGTTTGTGGCGAA------CGATACTGTGCCATGCAGAGTAGCGAACCCACACGC---TGCATT------------TATGGCACTGAA---ACTCAATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCACCTCGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------ATCTTTATAACAGTGCTACAATATGGTAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTATCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTATTGTAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTTAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAAACCAATGCAATCCTTTGCGTTAATGCACTGGGTAGAAGTTATGTACTTCCTCTTGATGGCACTCCTACGGGTGTGACTCTAACTCTACTTTCAGGAAATCTATATGCTGAAGGGTTTAAGATGACTGGTGGTCTCACCATCGAACATTTACCTAAATACGTCATGATTGCTACACCTAGTAGAACCTTCGTTTACACATTGGTTGGAAAACAATTAAAAGCTACCACTGCTACGGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >Felis_catus_NLD_UU88_2010_M_AGT52085_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGTTTTTACTCGCGTGCATAATTGCATGCGCTTTTGGAGAG------CGTTATTGTGCCATGCAGCATGCACCTTCTACAAGT---TGCATC------------AATGACACCGAT---TCTACATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTCATAACAGTGTTACAATATGGCAGACCACAATTCAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTATCAAGTCTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGTTGCAGTTGTGACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTATTCAGTTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAGACCAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTTCTGCCTCTTGATGGTACACCTACGGGTGTTACTCTCACGCTACTTTCAGGAAATCTATATGCTGAAGGCTTCAAAATGGCTGGTGGGCTTACCATCGAGCATTTGCCTAAATATGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAATTAAAGGCAACTACTGCCACAGGATGGGCCTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >H16_NA_ACN71200_1_1973_China_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAAGACGATACAGGTTTGTCA---TGTCGC------------AATAGCACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCTATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATT------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCCTTCAACCCTGAAACTAACGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTGCCAAAATACGTAATGGTTGCATTACCCAGCAGGACTATTGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >UU4_NA_ACT10890_1_2007_02_02_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAATACATTTTGTTTCTACTTGCGTGCACTATTTCATTCGTTTATGGAAAA------CGCTACTGTGCTATGCAAGACTTAAATTCTACGTCT---TGT---------------GATGGCACAGAC---GATCAATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTCGCTAACTGGAACTTCAGCTGGTCTGTAATACTTATT------GTTTTTATAACAGTGTTAAAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCACTTACGATTTTTAATGCATACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCAATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAGACTAATGCTATTCTTTGTGTTAATGCATTAGGTAGAAGTTATGTTCTACCCTTAGACGGTACACCCACCGGTGTAACCCTCACGCTACTTTCAGGAAATCTATATGCTGAAGGTTTTAAAATGGCTGGTGGTCTTACCATCGAGCATTTGCCTAAATATGTCATGATTGCTACACCTAGTAGAACCATCGTCTACACATTAGTTGGAAAACAATTAAAAGCAACTACTGCTACAGGATGGGCTTACTACGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >UU40_NA_ADO39822_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTCTTTTCATATTTGCGTGCATAATTGCATGCGTTTATGGAGAA------CGTTACTGTGCTATGAAAGATGACAATCCTATGTCT---TGCATC------------AATGGCACTGAC---TCACAATGTCGAACCTGCTTCGAACGCGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGCTACAATATGGTAGACCACAATTCAGCTGGATCGTTTATGGCATTAAAATGCTGATCATGTGGCTACTTTGGCCCATTGTTCTAGCGCTTACGATTTTTAATGCATATTCTGAGTATCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTATAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAAACCAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTACTTCCTCTTGATGGCACTCCCACAGGTGTCACTCTTACTCTACTTTCAGGAAATCTATATGCTGAAGGTTTTAAAATGGCTGGTGGTCTTACCATCGAGCATTTACCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGCAACTACTGCTACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >HLJ_071_NA_ASB15743_1_2016_07_01_China_Dog_Alphacoronavirus_1 ---------------------------------------------------ATGAAGCACTCCTCGTTTGAACTAAACAAAATGAAGATTTTGTTAATACTAGCGTGTGCAGTTGCATGCGTTTATGGGGAGCAAATAAGGTACTGTGCTATGCAA---GAGACTGGTTTGTCA---TGTCGC------------AATGGTACAGCA---TCTGATTGTGAGTCATGCTTCAATGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACGGTTCTACAATATGGTAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTTATTATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGACTTTTAATGCATACTCGGAATATGAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTATTACATTTGTACTTTGGATTATGTATTTTGTTAGATCCATTCAGTTATACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAGACTAACGCAATTCTATGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTTGAAGGTGTGCCAACTGGCGTCACTCTAACATTGCTCTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCTGGTGGTATGAACATCGACAATTTACCAAAATATGTAATGGTTGCATTACCTAGCAGGACCATTGTCTACACACTTGTTGGCAAGCAATTGAAAGCAAGTAGTGCAACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGATGCAAGAACTGACAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >UU47_NA_AEK25515_1_2010_07_14_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGTTTTTACTCGCGTGCATAATTGCATGCGTTTTTGGAGAG------CGTTATTGTGCCATGAAAATTCACCAACCTACAAGT---TGCATC------------AATGGCACCGAT---TCTACATGTCAAACCTGCTTCGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTCATAACAGTGTTACAATATGGCAGACCACAATTCAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTATCAAGTCTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTGACGTTTGCACTTTGGATGATGTATTTTGTGCGATCCATTCAGTTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAGACCAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTTCTGCCTCTTGATGGTACACCTACGGGTGTTACTCTCACGCTACTTTCAGGAAATCTATATGCTGAAGGCTTCAAAATGGCTGGTGGGCTTACCATCGAGCATTTGCCTAAATATGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAATTAAAGGCAACTACTGCTACAGGATGGGCCTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >HLJ_DQ_2016_01_NA_ASB16892_1_2016_10_China_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGTTAATACTCGCGTGCGTGATTGCATGCGTTTATGGAGAA------CGTTATTGTGCCATGCAAGATGAACAATCTACAAGC---TGCATC------------AATGGCACCGGCTCACAATTATGTCAAACCTGTTTCGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTTATACTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCTCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTATCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTCGCACTTTGGATGATGTATTTTGTGAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAAACCAATGCAATTCTCTGCGTTAATGCATTGGGTAGAAGCTATGTTCTACCGCTAGATGGCACACCTACGGGTGTCACTCTCACTCTACTTTCGGGAAATCTATATGCTGAAGGTTTTAAAATGGCTGGTGGTCTTACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTGAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >UU7_NA_ACT10881_1_2007_04_25_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGTTTCTATTTGCGTGCATAATTGCATGCGTTTATGGAGAA------CGCTACTGTGCTATGCAAGACGTAAATTCTATGTCT---TGTGTT------------AATGGCACAAAC---AATCAATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTCGCTAACTGGAACTTCAGCTGGTCTGTAATACTTATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCACTTACGATTTTTAATGCATACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCAATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAGACTAATGCTATTCTTTGTGTTAATGCATTAGGTAGAAGTTATGTTCTACCCTTAGATGGTACACCCACCGGTGTAACCCTTACGCTACTTTCAGGAAATCTATATGCTGAAGGTTTTAAAATGGCTGGTGGTCTTACCATCGAGCATTTGCCTAAATATGTCATGATTGCTACACCTAGTAGAACCATCGTCTACACATTAGTTGGAAAACAATTAAAAGCAACTACTGCTACAGGATGGGCTTACTACGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >HLJ_072_NA_ASB15753_1_2016_07_01_China_Dog_Alphacoronavirus_1 ---------------------------------------------------ATGAAGCACTCCTCGTTTGAACTAAACAAAATGAAGATTTTGTTAATACTAGCGTGTGCAGTTGCATGCGTTTATGGGGAGCAAATAAGGTACTGTGCTATGCAA---GAGACTGGTTTGTCA---TGTCGC------------AATGGTACAGCA---TCTGATTGTGAGTCATGCTTCAATGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACGGTTCTACAATATGGTAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTTATTATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGACTTTTAATGCATACTCGGAATATGAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTATTACATTTGTACTTTGGATTATGTATTTTGTTAGATCCATTCAGTTATACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAGACTAACGCAATTCTATGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTTGAAGGTGTGCCAACTGGCGTCACTCTAACATTGCTCTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCTGGTGGTATGAACATCGACAATTTACCAAAATATGTAATGGTTGCATTACCTAGCAGGACCATTGTCTACACACTTGTTGGCAAGCAATTGAAAGCAAGTAGTGCAACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGATGCAAGAACTGACAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >HLJ_HRB_2016_13_NA_AUG98146_1_2016_11_China_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGTTAACACTCGCGTGCATTGTTGCATGCGTTTATGGAGAA------CGCTACTGTGCCATGCAA---CCTGATGGCTTGCAG---TGCGTT------------AATCACACAGAT---TCAAGTTGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAGCAGTGTTACAATATGGCAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTACTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCGGAGTATCAAGTTTCCAGATATGTAATGTTCGGTTTTAGTATTGCAGGTGCAGTCGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAAACCAATGCAATTCTTTGTGTTAACGCATTGGGTAGAAGCTATGTGCTACCTCTTGACGGCACTCCTACGGGTGTCACTCTCACCTTACTTTCAGGAAATCTATATGCTGAAGGTTTCAAAATGGCTGGTGGTCTTACCATCGAGCATTTACCTAAATATGTCATGATTGCTACACCTAGTAGAACCATCGTCTACACATTAGTTGGGAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAGAAATTATTACATATGGTG >ISU_1_NA_ABG89312_1_NA_USA_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTAGCGTGTGCGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGCAA---GAAACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCAGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCCTGGTGGTCTTTCAACCCTGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCATTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >attenuated_H_M_ABU49663_1_NA_China_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAAGACGATACAGGTTTGTCA---TGTCGC------------AATAGCACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCTATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATT------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCCTTCAACCCTGAAACTAACGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTGCCAAAATACGTAATGGTTGCATTACCCAGCAGGACTATTGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >XXN_NA_QDM36991_1_2018_04_China_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAATACATTTTGTTCCTACTAGCTTGCGTGATCGCAAGCGTTTATGGAGAA------CGCTATTGTGCCATGCAAGGTGCACTTTCTACAAGC---TGCATC------------AATGGCACAACT---AACCCATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTTATACTTATT------GTTTTTATAACAGTACTACAATATGGCAGACCTCAATTTAGCTGGCTCGTTTATGGTATTAAAATGCTAATCATGTGGCTGTTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATATTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTCATTACGTTTGCACTCTGTATGATGTATTTTGTTAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAAACTAATGCAATTCTTTGCGTTAATGCATTGGGTAGAAGTTATGTACTTCCTCTTGATGGTACACCTACAGGTGTCACTCTCACTTTACTTTCAGGAAATCTATATGCTGAAGGCTTTAAAATGGCTGGTGGTCTTACCATCGAGCATTTACCTAAATATGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGCAAACAATTAAAAGCAACTACTGCCACGGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGACAATTTGAGTGAACATGAAAAATTATTACATATGGTG >JS2012_M_AMB66492_1_2012_China_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAAGACGATACAGGTTTGTCA---TGTCGC------------AATAGCACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATT------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCCTTCAACCCTGAAACTAACGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTGCCAAAATACGTAATGGTTGCATTACCCAGCAGGACTATTGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >K378_M_AFX81102_1_1978_USA_Dog_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTAGCGTGTGCAATTGCATGCGCATGTGGTGAA------CGTTATTGCGCCATGAAATCTGACTCAGAAACTTCG---TGTCGT------------AATAGCACTGCT---ACTGATTGTGAATCATGCTTCAACGGAGGTGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACGGTTTTACAATATGGTAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTTATTATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCTGAATATGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAATTGTTACATTTATACTTTGGATTATGTATTTTATTAGATCCATTCAGTTATACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAACGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTACGTGCTTCCTCTTGAAGGTGTGCCAACTGGTGTCACTCTAACATTGCTCTCAGGGAATTTGTATGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACCATTGTCTACACACTTGTTGGCAAGAAATTGAAAGCAAGTAGTGCGACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGATGCACGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >partially_attenuated_Miller_M60_NA_ABG89308_1_1987_USA_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAAGACGATACAGGTTTGTCA---TGTCGC------------AATAGCACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATTATTTTTATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCCTTCAACCCTGAAACTAACGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTGCCAAAATACGTAATGGTTGCATTACCCAGCAGGACTATTGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >virulent_Purdue_NA_ABG89329_1_1952_USA_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAATCCGATACAGATTTGTCA---TGTCGC------------AATAGTACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCGTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAACGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACTATTGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >attenuated_Purdue_P115_NA_ABG89323_1_NA_NA_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAATCCGATACAGATTTGTCA---TGTCGC------------AATAGTACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCGTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAAAGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACTATTGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGCTAATACTCGCGTGCATAATTGCATGCGTTTATGGTGAA------CGCTACTGTGCCATGCAA---GACAGTGGCTTGCAG---TGTATT------------AATGGCACAAAT---TCAAGATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTGTTCAGCTATATAGAAGAACCAAATCATGGTGGTCTTTTAATCCTGAGACTAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTGCTTCCCTTAGATGGTACTCCTACAGGTGTTACCCTTACTCTACTTTCAGGAAATCTATATGCTGAAGGTTTCAAAATGGCTGGTGGTTTAACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTACGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGACAATTTGAGTGAACATGAAAAATTATTACATATGGTG >PRCV_USA_Minnesota_46140_2016_M_ASV45152_1_2016_11_01_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGGTTTTGTTGATATTGGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTTTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTTATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTATACAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCTGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTTGAGGGTTTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTTAAAATTGCCGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCATTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 ATGCCTATGATGCCTATAAGAATTTCATGCGAATTAAAGCATACAACCCTGAAGAAGCACTCCTTGTTTGAACTAAACAAAATGAAGATTTTGTTAATATTAGCGTGTGCAATTGCATGCGTTTATGGAGAG------CGCTATTGTGCTATGCAAGATGATAGTGGAACTTCA---TGTCGC------------AATAGCTCT------TCAACTTGTGAATCATGCTTCAATGGAGGTGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACGGTTTTACAATACGGTAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATTATGTGGCTATTATGGCCCATTGTTTTGGCGCTTACGATTTTTAATGCATACTCGGAATACGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACGTTTGTACTTTGGATTATGTATTTTGTAAGATCTATTCAGTTATACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAACGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTACGTGCTTCCTCTCGAAGGTGTGCCAACTGGCGTCACTTTAACATTGCTTTCAGGGAATTTGTATGCTGAAGGATTCAAAATTGCTGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACCATCGTCTACACACTTGTTGGCAAGAAATTGAAAGCAAGTAGTGCAACTGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACAGACGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >virulent_Miller_M6_NA_ABG89300_1_NA_USA_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAAGACGATACAGGTTTGTCA---TGTCGC------------AATAGCACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATT------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCCTTCAACCCTGAAACTAACGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTGCCAAAATACGTAATGGTTGCATTACCCAGCAGGACTATTGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGTTCTTACTTGCGTGCATAATTGCATGCGTTTATGGAGAA------CGTTATTGTGCCATGCAAAGTGCAACTTCTACAAGC---TGCATT------------AATGGCACTGACCACAACTCATGTCAAACTTGCTTCGAACGTGGTGATCTTATTTGGCATCTCGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATACGGCAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCGTACTCTGAGTACGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCATTATGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAGACTAATGCAATTCTCTGTGTTAATGCGTTGGGTAGAAGCTACGTCCTACCCCTTGATGGCACTCCTACGGGTGTCACTCTCACGTTACTTTCAGGAAACCTATATGCTGAAGGGTTTAAAATGGCTGGTGGTCTTACCATCGAGCACTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACCTTAGTTGGAAAACAGTTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTA >TGEV_AHHF_NA_AQT01353_1_2015_12_22_China_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAATCCGATACAGATTTGTCA---TGTCGC------------AATAGTACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCGTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAAAGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACTATTGTCTACATACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >Cat2_day21_deletion_NA_AMD11158_1_2013_Belgium_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGCTCATGTTCGCGTGCATAATTGCATGCGTTTGTGGTGAA------CGATACTGTGCCATGCAAGGTGCAAGTACAAGC------TGCATC------------AATGGCACCAAC---TCAGAATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCCGTAATATTGATC------GTTTTTATAACAGTTTTACAATATGGAAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCCGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTCATAACGTTTGCACTCTGGATGATGTATTTTGTGAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTCAACCCTGAAACTAATGCAATTCTTTGTGTTAACGCACTGGGTAGAAGTTATGTTTTACCCCTTGATGGCACTCCTACAGGTGTCACTCTTACTTTGCTTTCAGGAAATCTATATGCTGAAGGTTTTAAGATGGCTGGTGGTCTTACCATCGAGCAATTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAATTAAAAGCAACTACTGCTACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAGATTATTACATATGGTG >80F_M_AJO27018_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGTTCTTACTTGCGTGCATAATTGCATGCGTTTATGGAGAA------CGTTATTGTGCCATGCAAAGTGCAACTTCTACAAGC---TGCATC------------AATGGCACTGACCACAACTCATGTCAAACTTGCTTCGAACGTGGTGATCTTATTTGGCATCTCGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATACGGCAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCGTACTCTGAGTACGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCATTATGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAGACTAATGCAATTCTCTGTGTTAATGCGTTGGGTAGAAGCTACGTCCTACCCCTTGATGGCACTCCTACGGGTGTCACTCTCACGTTACTTTCAGGAAACCTATATGCTGAAGGGTTTAAAATGGCTGGTGGTCTTACCATCGAGCACTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACCTTAGTTGGAAAACAGTTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTA >HE_1_NA_APQ31246_1_2015_China_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAATCCGATACAGATTTGTCA---TGTCGC------------AATAGTACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCCGGTCTATAATATTGATC------GTTTTTATAACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCGTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAAAGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACTATTGTCTACATACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAGCAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >67F_M_AJO27008_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGTTCTTACTTGCGTGCATAATTGCATGCGTTTATGGAGAA------CGTTATTGTGCCATGCAAAGTGCAAATTCTACAAGC---TGCATC------------AATGGCACTGACCACAACTCATGTCAAACTTGCTTCGAACGTGGTGATCTTATTTGGCATCTCGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATACGGCAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCGTACTCTGAGTACGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCATTATGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAGACTAATGCAATTCTCTGTGTTAATGCGTTGGGTAGAAGCTACGTCCTACCCCTTGATGGCACTCCTACGGGTGTCACTCTCACGTTACTTTCAGGAAACCTATATGCTGAAGGGTTTAAAATGGCTGGTGGTCTTACCATCGAGCACTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACCTTAGTTGGAAAACAGTTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTA >WSU_79_1683_NA_AFH58016_1_NA_NA_Unknown_Alphacoronavirus_1 ATGCTTACGATGCCTATAAGAATTTCATGCGAATTAAAGCATACAACCCCGATGAAGCACTCCTTGTTTGAACTAAACAAAATGAAGATTTTGTTAATATTAGCGTGCGCAGTTGCATGCGTTTACGGGGAGCAAATAAGGTACTGTGCTATGCAA---GAGACTGGTTTGTCA---TGTCGC------------AATGGTACAGCA---TCTGATTGTGAGTCATGCTTCAATGGAGGTGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACGGTTCTACAATATGGTAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTTATTATGTGGCTATTATGGCCTATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATATGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACATTTGCACTTTGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAAACTAATGCAATTCTTTGTGTTAACGCGTTGGGTAGAAGCTATGTTTTGCCCCTTGATGGCACACCCACGGGTGTTACTCTCACGCTACTTTCAGGAAATCTATATGCTGAAGGTTTTAAAATGGCTGGTGGTCTCACCATTGAACATTTACCTAAATACGTCATGATTCTA---------------------------------------CGCCTAATAGAACCATCGTTTACACAT--------------------------------------------------------------------------------------------- >TGEV_USA_Minnesota153_2014_M_ASV64433_1_2014_02_04_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTGGCGTGTGCGATGGCATGCGCATGTGGGGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGCTTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGCTATACAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCAGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTCAAAATTGCCGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCATTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >Cat2_day84_NA_AMD11213_1_2013_Belgium_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGCTCATGTTCGCGTGCATAATTGCATGCGTTTGTGGTGAA------CGATACTGTGCCATGCAAGGTGCAAGTACAAGC------TGCATC------------AATGGCACCAAC---TCAAAATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCCGTAATATTGATC------GTTTTTATAACAGTTTTACAATATGGAAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCCGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTCATAACGTTTGCACTCTGGATGATGTATTTTGTGAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTCAACCCTGAAACTAATGCAATTCTTTGTGTTAACGCACTGGGTAGAAGTTATGTTTTACCCCTTGATGGCACTCCTACAGGTGTCACTCTTACTTTGCTTTCAGGAAATCTATATGCTGAAGGTTTTAAGATGGCTGGTGGTCTTACCATCGAGCAATTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAATTAAAAGCAACTACTGCTACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAGATTATTACATATGGTG >UU11_NA_ACT10870_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAATACCTTTTGTTTATATTTGTGTGCATAATTGCACGCGTTTATGGAGAA------CGTTATTGTGCTATGCAAAAAGATGCTCCTATTACA---TGCATC------------AATGACACTGAC---TCTACATGTCAAACATGCTTCGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATACTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCCATTGTTCTAGCGCTTACGATTTTTAATGCATATTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTATTCAGTTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAAACCAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTACTTCCCCTTGATGGTACACCAACGGGTGTCACTCTCACACTACTTTCAGGAAATCTATATGCTGAAGGTTTTAAAATGGCTGGTGGTCTTACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACACTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTA >TGEV_HX_NA_AGM75130_1_2012_05_05_China_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAATCCGATACAGATTTGTCA---TGTCGC------------AATAGTACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCGTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAAAGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACCTCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACTATTGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >TGEV_USA_NorthCarolina140_2007_M_ASV64317_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTGGCGTGTGCGATTGTATGCGCATGTGGAGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTCATGCTTCAACGGGGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGCTATACAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCTGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTCAAAATTGCTGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCATTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >SeCoV_1480_Murcia_Lorca_gp7_QKV43717_1_2014_05_30_Spain_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTAGCGTGTGCGATTGTATGCACATATGGCGAA------CGCTATTGTGCTATGAAGGACGATAACGGTCTCTCA---TGTCGC------------AATAGCACAGCG---TCTGATTGTGATGCGTGCTTCAACAAAGGCGATCTTATTTGGCATCTCGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCCTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACAGTTGTACTTTGGATTATGTATTTCGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCCTTTAACCCTGAGACTAACGCAATTCTTTGCGTTAGTGCACTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTTTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTGCCAAAATACGTAATGGTTGCATCACCCAGCAGGACTATTGTCTACACACTTGTTGGCAAAAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAGAAATTATTACATATGGTA >HLJ_073_NA_ASB15761_1_2016_07_01_China_Dog_Alphacoronavirus_1 ---------------------------------------------------ATGAAGCACTCCTCGTTTGAACTAAACAAAATGAAGATTTTGTTAATACTAGCGTGTGCAGTTGCATGCGTTTATGGGGAGCAAATAAGGTACTGTGCTATGCAA---GAGACTGGTTTGTCA---TGTCGC------------AATGGTACAGCA---TCTGATTGTGAGTCATGCTTCAATGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACGGTTCTACAATATGGTAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTTATTATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGACTTTTAATGCATACTCGGAATATGAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTATTACATTTGTACTTTGGATTATGTATTTTGTTAGATCCATTCAGTTATACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAGACTAACGCAATTCTATGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTTGAAGGTGTGCCAACTGGCGTCACTCTAACATTGCTCTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCTGGTGGTATGAACATCGACAATTTACCAAAATATGTAATGGTTGCATTACCTAGCAGGACCATTGTCTACACACTTGTTGGCAAGCAATTGAAAGCAAGTAGTGCAACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGATGCAAGAACTGACAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >UNKNOWN_HQ012372_NA_ADL71502_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGCACGTTTTGTTCATATTCGCTTGCATAATTGCATGCGCCTTTGGTGAA------CGTTACTGTGCTATGCAAGATGCGCAATCCACAACT---TGCATC------------AATGGCACCGAGTCGAATTCATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------ATCTTTATAACAGTGCTACAATATGGTAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTGTTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTATCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTATCGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAAACCAATGCTATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTACTTCCTCTTGATGGCACTCCTACGGGTGTGACTCTCACTCTACTTTCAGGGAATCTATATGCTGAAGGCTTTAAAATGGCTGGTGGTCTTACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACGCCTAGTAGAACCATCGTCTACACACTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >UU30_NA_ADO39854_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTCTTTTCATATTTGCGTGCATAATTGCATGCGTTTATGGAGAA------CGTTACTGTGCTATGCAAGATGACAATCTTACGTCT---TGCATC------------ACTGGCACTGAC---TCAAAATGTCAAACCTGCTTCGAACGCGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGCTACAATATGGTAGACCACAATTCAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTACTTTGGCCCATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTATCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTATAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAAACCAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTACTTCCTCTTGATGGCACTCCCACAGGTGTCACTCTTACTCTACTTTCAGGAAATCTATATGCTGAAGGTTTTAAAATGGCTGGTGGTCTTACCATCGAGCATTTACCTAAATATGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGCAACTACTGCTACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >CCoV_NTU336_F_2008_M_ADB28912_1_2008_11_Taiwan_Dog_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGGTTTTGTTAATGCTTGCGTGCGTCTTTGCATGCGTTTATGGAGAT------CGATATTGTGCTATGCAAGCTGATAGCGGCATTACACAATGTCGTGCTCAAACCCTTAATGGCACTAAT---TCTGAGTGTGAATCTTGCTTCAATGGTGGTGATCTTATTTGGCATCTCGCTAACTGGAACTTCAGCTGGTCTATAATATTGATT------GTTTTTATAACTGTGTTACAATATGGTAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATTATGTGGCTATTATGGCCCATTGTTCTGGCTCTTACGATTTTTAATGCATACTCGGAATACGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAATTGTTACATTTATACTTTGGATTATGTATTTTGTTAGATCCATTCAGTTATACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAACGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTCCCTCTTGAAGGTGTGCCAACTGGTGTCACTTTAACATTGCTTTCAGGGAATTTGTATGCTGAAGGTTTCAAAATTGCAGGTGGTATGAACATCGACAATTTGCCAAAGTACGTGATGGTTGCATTACCTAGCAGGACCATTGTCTACACACTTGTTGGTAAGAAATTGAAAGCAAGTAGTGCAACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGATGCAAGAACTGACAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >UU9_NA_ACT10975_1_2007_05_24_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGTTTGTTTTCGCATGCATAATTGCATGTGTTTTTGGTGAA------CGTTACTGCGCTATGCATGAATCGCCATCGACACAG---TGCATT------------AACGGCACCGATTCACAGCCATGTCAAACCTGCTTCGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATACTGATA------GCTTTTATAACAGTGCTACAATATGGCAGACCTCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCGGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAGTCGTAACGTTTGCACTATGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAAACTAATGCAATTCTTTGTGTTAATGTATTGGGTAGAAGTTATGTACTTCCCCTTGATGGTACACCTACGGGTGTTACTCTTACGTTACTTTCAGGAAATCTATATGCTGAAGGCTTTAAAATGGCTGGTGGTCTTACCATCGATCATTTGCCTAAGTACGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAACTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >UU23_NA_ADC35477_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGCACGTTTTGTTCATATTCGCTTGCATAATTGCATGCGCCTTTGGTGAA------CGTTACTGTGCTATGCAAGATGCGAGATCCACAACT---TGCATC------------AATGGCACCGAGTCGGGTTCATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------ATCTTTATAACAGTGCTACAATATGGTAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTGTTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTATCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTATCGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAAACCAATGCTATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTACTTCCTCTTGATGGCACTCCTACGGGTGTGACTCTCACTCTACTTTCAGGGAATCTATATGCTGAAGGCTTTAAAATGGCTGGTGGTCTTACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACGCCTAGTAGAACCATCGTCTACACACTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >FCoVWSU791146_P8_M_AGZ84531_1_2011_USA_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGCTAATACTCGCGTGCATAATTGCATGCGTTTATGGTGAA------CGCTACTGTGCCATGCAA---GACAGTGGCTTGCAG---TGTATT------------AATGGCACAAAT---TCAAGATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTGTTCAGCTATATAGAAGAACCAAATCATGGTGGTCTTTTAATCCTGAGACTAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTGCTTCCCTTAGATGGTACTCCTACAGGTGTTACCCTTACTCTACTTTCAGGAAATCTATATGCTGAAGGTTTCAAAATGGCTGGTGGTTTAACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTACGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGACAATTTGAGTGAACATGAAAAATTATTACATATGGTG >WH_1_M_ADY39744_1_NA_China_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAATCCGATACAGATTTGTCA---TGTCGC------------AATAGTACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCGTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAAAGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACTATTGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >FIPV_79_1146_NA_AAY32598_1_NA_NA_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGCTAATACTCGCGTGCATAATTGCATGCGTTTATGGTGAA------CGCTACTGTGCCATGCAA---GACAGTGGCTTGCAG---TGTATT------------AATGGCACAAAT---TCAAGATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTGTTCAGCTATATAGAAGAACCAAATCATGGTGGTCTTTTAATCCTGAGACTAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTGCTTCCCTTAGATGGTACTCCTACAGGTGTTACCCTTACTCTACTTTCAGGAAATCTATATGCTGAAGGTTTCAAAATGGCTGGTGGTTTAACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTACGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGACAATTTGAGTGAACATGAAAAATTATTACATATGGTG >UU21_NA_ADL71470_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGTTCATATTCGCTTGCATAATTGCATGCGCCTTTGGTGAA------CGTTACTGTGCTATGCAAGAAGCGAAATCCACAACT---TGCATC------------AATGGCACCGAGCCGGGTTCATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTAGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------ATCTTTATAACAGTGCTACAATATGGTAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTGTTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTATCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTATCGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGTTGGTCTTTTAATCCTGAAACCAATGCTATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTACTTCCTCTTGATGGCACTCCTACGGGTGTGACTCTCACTCTACTTTCAGGGAATCTATATGCTGAAGGCTTTAAAATGGCTGGTGGTCTTACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACGCCTAGTAGAACCATCGTCTACACACTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1 ATGCCTATGATGCCTATAAGAATTTTATGCGAATTAAAGCATATAACCCTGATGAAGCACTCCTTGTTTGAACTAAACAAAATGAAGATTTTGTTAATATTAGCGTGTGCAATTGCATGCGCATGTGGTGAA------CGTTATTGCGCCATGAAATCTGACTCAGAAACTTCG---TGTCGT------------AATAGCACTGCT---ACTGATTGTGAATCATGCTTCAACGGAGGTGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACGGTTTTACAATATGGTAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTTATTATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCTGAATATGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAATTGTTACATTTATACTTTGGATTATGTATTTTATTAGATCCATTCAGTTATACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAACGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTACGTGCTTCCTCTTGAAGGTGTGCCAACTGGTGTCACTCTAACATTGCTCTCAGGGAATTTGTATGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACCATTGTCTACACACTTGTTGGCAAGAAATTGAAAGCAAGTAGTGCGACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGATGCACGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >HLJ_HRB_2016_11_NA_AUG98135_1_2016_11_China_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGTTAACACTCGCGTGCATTGTTGCATGCGTTTATGGAGAA------CGCTACTGTGCCATGCAA---CCTGATGGCTTGCAG---TGCGTT------------AATCACACAGAT---TCAAGTTGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAGCAGTGTTACAATATGGCAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTACTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCGGAGTATCAAGTTTCCAGATATGTAATGTTCGGTTTTAGTATTGCAGGTGCAGTCGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAAACCAATGCAATTCTTTGTGTTAACGCATTGGGTAGAAGCTATGTGCTACCTCTTGACGGCACTCCTACGGGTGTCACTCTCACCTTACTTTCAGGAAATCTATATGCTGAAGGTTTCAAAATGGCTGGTGGTCTTACCATCGAGCATTTACCTAAATATGTCATGATTGCTACACCTAGTAGAACCATCGTCTACACATTAGTTGGGAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAGAAATTATTACATATGGTG >TGEV_USA_Illinois149_2013_M_ASV64397_1_2013_02_28_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTGGCGTGTGCGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTCATGCTTCAACGGGGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGCTATATAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCTGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTCAAAATTGCTGGTGGTATGAACATCGACAATTTGCCAAAATACGTAATGGTTGCACTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >SHXB_M_AKA60058_1_2013_03_07_China_Swine_Alphacoronavirus_1 ATGCTTACGATGCCTATAAGAATTTTATGCGAATTAAAGCATACAACCCCGATGGAGCACTCCTTGCTTGAACTAAACAAAATGAAGATTTTGTTAATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAATCCGATACAGATTTGTCA---TGTCGC------------AATAGTACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAGCTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCGTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAAAGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACTATTGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >Felix_NA_AXE71625_1_2012_07_Germany_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGTTTATATTTGCGTGCATAATTGCATGTGTCTGTGGAGAA------CGTTACTGTGCTATGCAGGATACGCCTCTCCTTACT---TGCAAA------------AATGCAACCGCC---GATACATGTGAAACCTGCTTCGAACGTGGTGATCTTATATGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTTTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTAATCATGTGGCTAATGTGGCCTATTGTTCTAGCTCTTACGATTTTTAATGCATACGCGGAGTACGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTCTGGATGATGTATTTTGTGAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAAACTAATGCAATTCTTTGCGTTAATGCATTGGGCAGAAATTATGTGCTGCCACTTGATGGTACACCTACAGGTGTTACTCTTACTTTACTGTCAGGAAATCTATATGCTGAAGGTTTTAAGATGTCTGGTGGTCTAACCATTGAACATTTACCTAAATACGTCATGATTGCTACACCTAGTAGGACCATCGTTTACACATTAGTTGGCAAACAATTAAAAGCAACTACTGCTACAGGGTGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >UU22_NA_ADC35466_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGCACGTTTTGTTCATATTCGCTTGCATAATTGCATGCGCCTTTGGTGAA------CGTTACTGTGCTATGCAAGATGCGAGATCCACAACT---TGCATC------------AATGGCACCGAGTCGGATTCATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------ATCTTTATAACAGTGCTACAATATGGTAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTGTTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTATCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTATCGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAAACCAATGCTATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTACTTCCTCTTGATGGCACTCCTACGGGTGTGACTCTCACTCTACTTTCAGGGAATCTATATGCTGAAGGCTTTAAAATGGCTGGTGGTCTTACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACGCCTAGTAGAACCATCGTCTACACACTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >DF_2_R3i_M_AFH55116_1_NA_NA_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGCTAATACTCGCGTGCATAATTGCATGCGTTTATGGTGAA------CGCTACTGTGCCATGCAA---GACAGTGGCTTGCAG---TGTATT------------AATGGCACAAAT---TCAAGATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATACTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTGTTCAGCTATATAGAAGAACCAAATCATGGTGGTCTTTTAATCCTGAGACTAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTGCTTCCCTTAGATGGTACTCCTACAGGTGTTACCCTTACTCTACTTTCAGGAAATCTATATGCTGAAGGTTTCAAAATGGCTGGTGGTTTAACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTACGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGACAATTTGAGTGAACATGAAAAATTATTACATATGGTG >OH7269_M_AKV62759_1_2014_07_24_USA_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTGGCGTGTGCGCTTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGCAA---TACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTTATGCTTCAACGGAGGCGATCTTATATGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTACTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATATCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGCACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTATACAGAAGGACTAAGTCTTGGTGGTCCTTCAACCCTGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCATCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGAAATTTATACGCTGAAGGGTTCAAAATTGCCGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCATTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGTAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >TS_M_ABC72418_1_NA_NA_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAAGACGATACAGGTTTGTCA---TGTCGC------------AATAGCACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATT------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAAAGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCCTTCAACCCTGAAACTAACGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGGAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTGCCAAAATACGTAATGGTTGCATTACCCAGCAGGACTATTGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >UU8_NA_ACT10900_1_2007_05_24_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGTTAATACTTGCGTGCATAATTGCATGTGTTTTTGGTGAG------CGTTACTGTGCTATGCGGGGTGAATCTTCTATGACC---TGCATT------------AATGGCACAGAATCGAACACATGCCAAACCTGCTTTGAACATGGTGATCTTATTTGGCATCTAGCTAACTGGAACTTCAGCTGGTCTGTAATACTGATT------ATCTTTATAACAGTGTTACAATATGGAAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTGTGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATATTCTGAGTATCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTATTCAGTTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAGACTAATGCAATTCTCTGCGTTAATGCACTGGGTAGAAGTTACGTTCTACCTCTTGATGGTACACCTACGGGTGTTACTCTTACGTTACTTTCAGGAAATCTATATGCTGAAGGCTTTAAAATGGCTGGTGGTCTTACCATCGATCATTTGCCTAAGTACGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAACTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGTTCTTACTTGCGTGCATAATTGCATGCGTTTATGGAGAA------CGTTATTGTGCCATGCAAAGTGCAACTTCTACAAGC---TGCATC------------AATGGCACTGACCACAACTCATGTCAAACTTGCTTCGAACGTGGTGATCTTATTTGGCATCTCGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATACGGCAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCGTACTCTGAGTACGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCATTATGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAGACTAATGCAATTCTCTGTGTTAATGCGTTGGGTAGAAGCTACGTCCTACCCCTTGATGGCACTCCTACGGGTGTCACTCTCACGTTACTTTCAGGAAACCTATATGCTGAAGGGTTTAAAATGGCTGGTGGTCTTACCATCGAGCACTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACCTTAGTTGGAAAACAGTTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTA >TGEV_USA_Tennessee144_2008_M_ASV64353_1_2008_04_15_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTGGCGTGTGCGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTCATGCTTCAACGGGGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGCTATATAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCTGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTCAAAATTGCTGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCATTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA
>RM_NA_ACT10859_1_2002_01_28_USA_Cat_Alphacoronavirus_1 --------------------------MKYVLFILACIIACVYGE--RYCA MQ-DDSLQ-CV----NGTD-SSCRTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKTWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >TGEV_USA_HB_1988_M_ASV64290_1_1988_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYILVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >TGEV_Mex_145_2008_M_ASV64362_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYILVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 MPMMPIRISCELKHTTPTKHSLFELNKMKILLVLACAIACVYGE--RYCA MQ-ETGLS-CR----NST--NDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV MFGFSVAGAIVTFILWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV >TGEV_USA_Illinois139_2006_M_ASV64308_1_2006_11_17_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAIACACGE--RYCA MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >TGEV_USA_Illinois146_2008_M_ASV64371_1_2008_04_09_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAIACACGE--RYCA MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 --------------------------MKYILFLLACIIACVYGE--RYCA MQSATSTS-CI----NGTDHNSCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1 --------------------------MMKILLI-ACAIACAYGE--RYCA MSDESSSTSCR----NSTSGDTCASCINSGDLIWHLANWNFSWSVILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV MFGFSIAGAVITFALWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGTPTGVTLTLLSGNLYAEGFKMAGGMNIEHLPKYVMVALPSR TIVYTLVGKQLKASSATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 --------------------------MKYILFLLACIIACVYGE--RYCA MQSATSTS-CI----NVTDHNSCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >TGEV_USA_Minnesota148_2013_M_ASV64388_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAIACACGE--RYCA MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >TGEV_USA_Minnesota152_2014_M_ASV64424_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAMACACGE--RYCA MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >79_1146_M_YP_004070198_1_NA_USA_Unknown_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCA MQ-DSGLQ-CI----NGTN-SRCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >TGEV_USA_Minnesota150_2013_M_ASV64406_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAIACACGE--RYCA MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >AYU_NA_AEM55570_1_2009_China_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQDKLLHMV >TGEV_USA_NorthCarolina142_2007_M_ASV64335_1_2007_02_16_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAIACACGE--RYCA MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1 ---------------------------MKILLLLACAIACVCGE--RYCA MQ-DTGFS-CR----NSST-TDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RNYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKQLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV >CB_05_ORF5_AKA65834_1_2005_Italy_Dog_Alphacoronavirus_1 ---------------------------MKILLVLACAIACACGE--RYCA MKSDSDTS-CR----NGTT-TDCESCFNGGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV MFGFSVAGAIVTFILWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV >TGEV_USA_Wisconsin151_2014_M_ASV64415_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAMACACGE--RYCA MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >Cat1_day28_withoutdeletion_NA_AMD11202_1_2013_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYVLLMFACIIACVCGE--RYCA MQGASTS--CI----NGTN-SECQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >Cat1_day28_deletion_NA_AMD11191_1_2013_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYVLLMFACIIACVCGE--RYCA MQGASTS--CI----NGTN-SECQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >Cat1_day7_NA_AMD11147_1_2013_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYVLLMFACIIACVCGE--RYCA MQGASTS--CI----NGTN-SECQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >TH_98_NA_AML22781_1_1998_02_10_China_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYILVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >UG_FH8_NA_ASU62493_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYILFILACIIACAFGE--RYCA MQDQSSIT-CI----NGTD-SSCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYNVSRYV MFGFSVAGAIVTFALWVMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIDHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >TGEV_USA_Z_1986_M_ASV64281_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYILVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >DF_2_M_AFH55125_1_NA_NA_Cat_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCA MQ-DSGLQ-CI----NGTN-SRCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >Cat2_day21_withoutdeletion_NA_AMD11169_1_2013_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYVLLMFACIIACVCGE--RYCA MQGASTS--CI----NGTN-SECQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHERLLHMV >UU16_NA_ACT10931_1_2007_06_07_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKYVLLILACIIACVFGE--RYCA MQDVQPTS-CI----NGTV-NSCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVITFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALG RRYVLPLDGTPTGITLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >UU15_NA_ACT10921_1_2007_07_13_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKYILLTFACMIACVYGE--RYCA MQSDSSTT-CV----NETG-GRCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >FCoVWSU791146_P50_M_AGZ84541_1_2011_USA_Cat_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCA MQ-DSGLQ-CI----NGTN-SRCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >FCoV_C1Je_NA_ABI14450_1_NA_NA_Unknown_Alphacoronavirus_1 --------------------------MKYVLLILACIIACVCGE--RYCA MQY-HSTS-CI----NGTETNSCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYKVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNVLG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMSGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKVTTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >UU19_NA_ADO39833_1_2007_08_23_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKHVLFLLACIIACVCGE--RYCA MQSIESTS-CI----NRTE-TQCQTCFERGDLIWHLANWNFSWSVILI-- IFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAVVTFALWLMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMTGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >UU2_NA_ACT10953_1_1993_03_30_USA_Cat_Alphacoronavirus_1 --------------------------MKYVLLMFACIIACVCGE--RYCA MQGASTS--CI----NGTN-SECQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >UU17_NA_ADL71449_1_2007_07_17_Netherlands_Cat_Alphacoronavirus_1 --------------------------MRHVLFLLACIIACVCGE--RYCA MQSSEPTR-CI----YGTE-TQCQTCFERGDLIWHLANWNFSWSVILI-- IFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIVGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMTGGLTIEHLPKYVMIATPSR TFVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >Felis_catus_NLD_UU88_2010_M_AGT52085_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKYVLFLLACIIACAFGE--RYCA MQHAPSTS-CI----NDTD-STCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAVAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >H16_NA_ACN71200_1_1973_China_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKDDTGLS-CR----NSTA-SDCESCFNGGYLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >UU4_NA_ACT10890_1_2007_02_02_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKYILFLLACTISFVYGK--RYCA MQDLNSTS-C-----DGTD-DQCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLKYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >UU40_NA_ADO39822_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKYVLFIFACIIACVYGE--RYCA MKDDNPMS-CI----NGTD-SQCRTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWIVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >HLJ_071_NA_ASB15743_1_2016_07_01_China_Dog_Alphacoronavirus_1 -----------------MKHSSFELNKMKILLILACAVACVYGEQIRYCA MQ-ETGLS-CR----NGTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTTFNAYSEYEVSRYV MFGFSIAGAIITFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKQLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV >UU47_NA_AEK25515_1_2010_07_14_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKYVLFLLACIIACVFGE--RYCA MKIHQPTS-CI----NGTD-STCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >HLJ_DQ_2016_01_NA_ASB16892_1_2016_10_China_Cat_Alphacoronavirus_1 --------------------------MKYILLILACVIACVYGE--RYCA MQDEQSTS-CI----NGTGSQLCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >UU7_NA_ACT10881_1_2007_04_25_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKYILFLFACIIACVYGE--RYCA MQDVNSMS-CV----NGTN-NQCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >HLJ_072_NA_ASB15753_1_2016_07_01_China_Dog_Alphacoronavirus_1 -----------------MKHSSFELNKMKILLILACAVACVYGEQIRYCA MQ-ETGLS-CR----NGTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTTFNAYSEYEVSRYV MFGFSIAGAIITFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKQLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV >HLJ_HRB_2016_13_NA_AUG98146_1_2016_11_China_Cat_Alphacoronavirus_1 --------------------------MKYILLTLACIVACVYGE--RYCA MQ-PDGLQ-CV----NHTD-SSCQTCFERGDLIWHLANWNFSWSVILI-- VFIAVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >ISU_1_NA_ABG89312_1_NA_USA_Swine_Alphacoronavirus_1 ---------------------------MKILLILACAIACACGE--RYCA MQ-ETGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFSFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >attenuated_H_M_ABU49663_1_NA_China_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKDDTGLS-CR----NSTA-SDCESCFNGGYLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >XXN_NA_QDM36991_1_2018_04_China_Cat_Alphacoronavirus_1 --------------------------MKYILFLLACVIASVYGE--RYCA MQGALSTS-CI----NGTT-NPCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVITFALCMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >JS2012_M_AMB66492_1_2012_China_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKDDTGLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >K378_M_AFX81102_1_1978_USA_Dog_Alphacoronavirus_1 ---------------------------MKILLILACAIACACGE--RYCA MKSDSETS-CR----NSTA-TDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV MFGFSVAGAIVTFILWIMYFIRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV >partially_attenuated_Miller_M60_NA_ABG89308_1_1987_USA_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKDDTGLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILIIF IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >virulent_Purdue_NA_ABG89329_1_1952_USA_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >attenuated_Purdue_P115_NA_ABG89323_1_NA_NA_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCA MQ-DSGLQ-CI----NGTN-SRCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >PRCV_USA_Minnesota_46140_2016_M_ASV45152_1_2016_11_01_USA_Unknown_Alphacoronavirus_1 ---------------------------MKVLLILACVIACACGE--RYCA MQ-DTGFS-CR----NSTV-SDCELCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGLPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_1 MPMMPIRISCELKHTTLKKHSLFELNKMKILLILACAIACVYGE--RYCA MQDDSGTS-CR----NSS--STCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV >virulent_Miller_M6_NA_ABG89300_1_NA_USA_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKDDTGLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 --------------------------MKYILFLLACIIACVYGE--RYCA MQSATSTS-CI----NGTDHNSCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >TGEV_AHHF_NA_AQT01353_1_2015_12_22_China_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYILVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >Cat2_day21_deletion_NA_AMD11158_1_2013_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYVLLMFACIIACVCGE--RYCA MQGASTS--CI----NGTN-SECQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHERLLHMV >80F_M_AJO27018_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 --------------------------MKYILFLLACIIACVYGE--RYCA MQSATSTS-CI----NGTDHNSCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >HE_1_NA_APQ31246_1_2015_China_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSRSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYILVGKKLKASSATGWAYYVKSKAGDYSAEARTDNLSEQEKLLHMV >67F_M_AJO27008_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 --------------------------MKYILFLLACIIACVYGE--RYCA MQSANSTS-CI----NGTDHNSCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >WSU_79_1683_NA_AFH58016_1_NA_NA_Unknown_Alphacoronavirus_1 MLTMPIRISCELKHTTPMKHSLFELNKMKILLILACAVACVYGEQIRYCA MQ-ETGLS-CR----NGTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIL---- ---------RLIEPSFTH------------------------------- >TGEV_USA_Minnesota153_2014_M_ASV64433_1_2014_02_04_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAMACACGE--RYCA MQ-DTGLS-CR----NSTV-SACESCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >Cat2_day84_NA_AMD11213_1_2013_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYVLLMFACIIACVCGE--RYCA MQGASTS--CI----NGTN-SKCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHERLLHMV >UU11_NA_ACT10870_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKYLLFIFVCIIARVYGE--RYCA MQKDAPIT-CI----NDTD-STCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >TGEV_HX_NA_AGM75130_1_2012_05_05_China_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNLDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >TGEV_USA_NorthCarolina140_2007_M_ASV64317_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAIVCACGE--RYCA MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >SeCoV_1480_Murcia_Lorca_gp7_QKV43717_1_2014_05_30_Spain_Swine_Alphacoronavirus_1 ---------------------------MKILLILACAIVCTYGE--RYCA MKDDNGLS-CR----NSTA-SDCDACFNKGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPLVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTVVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVASPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >HLJ_073_NA_ASB15761_1_2016_07_01_China_Dog_Alphacoronavirus_1 -----------------MKHSSFELNKMKILLILACAVACVYGEQIRYCA MQ-ETGLS-CR----NGTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTTFNAYSEYEVSRYV MFGFSIAGAIITFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKQLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV >UNKNOWN_HQ012372_NA_ADL71502_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKHVLFIFACIIACAFGE--RYCA MQDAQSTT-CI----NGTESNSCQTCFERGDLIWHLANWNFSWSVILI-- IFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >UU30_NA_ADO39854_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKYVLFIFACIIACVYGE--RYCA MQDDNLTS-CI----TGTD-SKCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >CCoV_NTU336_F_2008_M_ADB28912_1_2008_11_Taiwan_Dog_Alphacoronavirus_1 ---------------------------MKVLLMLACVFACVYGD--RYCA MQADSGITQCRAQTLNGTN-SECESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV MFGFSVAGAIVTFILWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV >UU9_NA_ACT10975_1_2007_05_24_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKYVLFVFACIIACVFGE--RYCA MHESPSTQ-CI----NGTDSQPCQTCFERGDLIWHLANWNFSWSVILI-- AFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNVLG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIDHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >UU23_NA_ADC35477_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKHVLFIFACIIACAFGE--RYCA MQDARSTT-CI----NGTESGSCQTCFERGDLIWHLANWNFSWSVILI-- IFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >FCoVWSU791146_P8_M_AGZ84531_1_2011_USA_Cat_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCA MQ-DSGLQ-CI----NGTN-SRCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >WH_1_M_ADY39744_1_NA_China_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >FIPV_79_1146_NA_AAY32598_1_NA_NA_Cat_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCA MQ-DSGLQ-CI----NGTN-SRCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >UU21_NA_ADL71470_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKYVLFIFACIIACAFGE--RYCA MQEAKSTT-CI----NGTEPGSCQTCFERGDLIWHLANWNFSWSVILI-- IFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSCWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1 MPMMPIRILCELKHITLMKHSLFELNKMKILLILACAIACACGE--RYCA MKSDSETS-CR----NSTA-TDCESCFNGGDLIWHLANWNFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV MFGFSVAGAIVTFILWIMYFIRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV >HLJ_HRB_2016_11_NA_AUG98135_1_2016_11_China_Cat_Alphacoronavirus_1 --------------------------MKYILLTLACIVACVYGE--RYCA MQ-PDGLQ-CV----NHTD-SSCQTCFERGDLIWHLANWNFSWSVILI-- VFIAVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >TGEV_USA_Illinois149_2013_M_ASV64397_1_2013_02_28_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAIACACGE--RYCA MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >SHXB_M_AKA60058_1_2013_03_07_China_Swine_Alphacoronavirus_1 MLTMPIRILCELKHTTPMEHSLLELNKMKILLILACVIACACGE--RYCA MKSDTDLS-CR----NSTA-SDCESCFNGGDLIWHLANWSFSWSIILI-- VFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >Felix_NA_AXE71625_1_2012_07_Germany_Cat_Alphacoronavirus_1 --------------------------MKYVLFIFACIIACVCGE--RYCA MQDTPLLT-CK----NATA-DTCETCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLMWPIVLALTIFNAYAEYEVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RNYVLPLDGTPTGVTLTLLSGNLYAEGFKMSGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >UU22_NA_ADC35466_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKHVLFIFACIIACAFGE--RYCA MQDARSTT-CI----NGTESDSCQTCFERGDLIWHLANWNFSWSVILI-- IFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >DF_2_R3i_M_AFH55116_1_NA_NA_Cat_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCA MQ-DSGLQ-CI----NGTN-SRCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >OH7269_M_AKV62759_1_2014_07_24_USA_Swine_Alphacoronavirus_1 ---------------------------MKILLILACALACACGE--RYCA MQ-YTGLS-CR----NSTV-SDCELCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFALWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLHLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEVRTDNLSEQEKLLHMV >TS_M_ABC72418_1_NA_NA_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCA MKDDTGLS-CR----NSTA-SDCESCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFKAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLGGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >UU8_NA_ACT10900_1_2007_05_24_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKYVLLILACIIACVFGE--RYCA MRGESSMT-CI----NGTESNTCQTCFEHGDLIWHLANWNFSWSVILI-- IFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIDHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 --------------------------MKYILFLLACIIACVYGE--RYCA MQSATSTS-CI----NGTDHNSCQTCFERGDLIWHLANWNFSWSVILI-- VFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYV MFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALG RSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSR TIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >TGEV_USA_Tennessee144_2008_M_ASV64353_1_2008_04_15_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAIACACGE--RYCA MQ-DTGLS-CR----NSTV-SDCESCFNGGDLIWHLANWNFSWSIILI-- IFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV MFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALG RSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSR TIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
Reading sequence file /data//pss_subsets/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/fasta/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1
Found 90 sequences of length 897
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 13.0%
Found 274 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0% 59.8% 92.8%100.0%
Using a window size of 80 with k as 24
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 181 polymorphic sites
**p-Value(s)**
----------
NSS: 0.00e+00 (1000 permutations)
Max Chi^2: 0.00e+00 (1000 permutations)
PHI (Permutation): 9.39e-01 (1000 permutations)
PHI (Normal): 9.42e-01
#NEXUS
[ID: 8647327730]
begin taxa;
dimensions ntax=90;
taxlabels
RM_NA_ACT10859_1_2002_01_28_USA_Cat_Alphacoronavirus_1
TGEV_USA_Minnesota148_2013_M_ASV64388_1_2013_01_04_USA_Unknown_Alphacoronavirus_1
TGEV_USA_Minnesota152_2014_M_ASV64424_1_2014_01_31_USA_Unknown_Alphacoronavirus_1
79_1146_M_YP_004070198_1_NA_USA_Unknown_Alphacoronavirus_1
TGEV_USA_Minnesota150_2013_M_ASV64406_1_2013_03_01_USA_Unknown_Alphacoronavirus_1
AYU_NA_AEM55570_1_2009_China_Swine_Alphacoronavirus_1
TGEV_USA_NorthCarolina142_2007_M_ASV64335_1_2007_02_16_USA_Unknown_Alphacoronavirus_1
A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1
CB_05_ORF5_AKA65834_1_2005_Italy_Dog_Alphacoronavirus_1
TGEV_USA_Wisconsin151_2014_M_ASV64415_1_2014_01_17_USA_Unknown_Alphacoronavirus_1
Cat1_day28_withoutdeletion_NA_AMD11202_1_2013_Belgium_Cat_Alphacoronavirus_1
TGEV_USA_HB_1988_M_ASV64290_1_1988_USA_Unknown_Alphacoronavirus_1
Cat1_day28_deletion_NA_AMD11191_1_2013_Belgium_Cat_Alphacoronavirus_1
Cat1_day7_NA_AMD11147_1_2013_Belgium_Cat_Alphacoronavirus_1
TH_98_NA_AML22781_1_1998_02_10_China_Swine_Alphacoronavirus_1
UG_FH8_NA_ASU62493_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1
TGEV_USA_Z_1986_M_ASV64281_1_2006_12_08_USA_Unknown_Alphacoronavirus_1
DF_2_M_AFH55125_1_NA_NA_Cat_Alphacoronavirus_1
Cat2_day21_withoutdeletion_NA_AMD11169_1_2013_Belgium_Cat_Alphacoronavirus_1
UU16_NA_ACT10931_1_2007_06_07_Netherlands_Cat_Alphacoronavirus_1
UU15_NA_ACT10921_1_2007_07_13_Netherlands_Cat_Alphacoronavirus_1
FCoVWSU791146_P50_M_AGZ84541_1_2011_USA_Cat_Alphacoronavirus_1
TGEV_Mex_145_2008_M_ASV64362_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1
FCoV_C1Je_NA_ABI14450_1_NA_NA_Unknown_Alphacoronavirus_1
UU19_NA_ADO39833_1_2007_08_23_Netherlands_Cat_Alphacoronavirus_1
UU2_NA_ACT10953_1_1993_03_30_USA_Cat_Alphacoronavirus_1
UU17_NA_ADL71449_1_2007_07_17_Netherlands_Cat_Alphacoronavirus_1
Felis_catus_NLD_UU88_2010_M_AGT52085_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1
H16_NA_ACN71200_1_1973_China_Swine_Alphacoronavirus_1
UU4_NA_ACT10890_1_2007_02_02_Netherlands_Cat_Alphacoronavirus_1
UU40_NA_ADO39822_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1
HLJ_071_NA_ASB15743_1_2016_07_01_China_Dog_Alphacoronavirus_1
UU47_NA_AEK25515_1_2010_07_14_Netherlands_Cat_Alphacoronavirus_1
2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_1
HLJ_DQ_2016_01_NA_ASB16892_1_2016_10_China_Cat_Alphacoronavirus_1
UU7_NA_ACT10881_1_2007_04_25_Netherlands_Cat_Alphacoronavirus_1
HLJ_072_NA_ASB15753_1_2016_07_01_China_Dog_Alphacoronavirus_1
HLJ_HRB_2016_13_NA_AUG98146_1_2016_11_China_Cat_Alphacoronavirus_1
ISU_1_NA_ABG89312_1_NA_USA_Swine_Alphacoronavirus_1
attenuated_H_M_ABU49663_1_NA_China_Unknown_Alphacoronavirus_1
XXN_NA_QDM36991_1_2018_04_China_Cat_Alphacoronavirus_1
JS2012_M_AMB66492_1_2012_China_Swine_Alphacoronavirus_1
K378_M_AFX81102_1_1978_USA_Dog_Alphacoronavirus_1
partially_attenuated_Miller_M60_NA_ABG89308_1_1987_USA_Swine_Alphacoronavirus_1
TGEV_USA_Illinois139_2006_M_ASV64308_1_2006_11_17_USA_Unknown_Alphacoronavirus_1
virulent_Purdue_NA_ABG89329_1_1952_USA_Swine_Alphacoronavirus_1
attenuated_Purdue_P115_NA_ABG89323_1_NA_NA_Swine_Alphacoronavirus_1
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1
PRCV_USA_Minnesota_46140_2016_M_ASV45152_1_2016_11_01_USA_Unknown_Alphacoronavirus_1
2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_1
virulent_Miller_M6_NA_ABG89300_1_NA_USA_Swine_Alphacoronavirus_1
26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
TGEV_AHHF_NA_AQT01353_1_2015_12_22_China_Swine_Alphacoronavirus_1
Cat2_day21_deletion_NA_AMD11158_1_2013_Belgium_Cat_Alphacoronavirus_1
80F_M_AJO27018_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
TGEV_USA_Illinois146_2008_M_ASV64371_1_2008_04_09_USA_Unknown_Alphacoronavirus_1
HE_1_NA_APQ31246_1_2015_China_Swine_Alphacoronavirus_1
67F_M_AJO27008_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
WSU_79_1683_NA_AFH58016_1_NA_NA_Unknown_Alphacoronavirus_1
TGEV_USA_Minnesota153_2014_M_ASV64433_1_2014_02_04_USA_Unknown_Alphacoronavirus_1
Cat2_day84_NA_AMD11213_1_2013_Belgium_Cat_Alphacoronavirus_1
UU11_NA_ACT10870_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1
TGEV_HX_NA_AGM75130_1_2012_05_05_China_Swine_Alphacoronavirus_1
TGEV_USA_NorthCarolina140_2007_M_ASV64317_1_2007_02_08_USA_Unknown_Alphacoronavirus_1
SeCoV_1480_Murcia_Lorca_gp7_QKV43717_1_2014_05_30_Spain_Swine_Alphacoronavirus_1
HLJ_073_NA_ASB15761_1_2016_07_01_China_Dog_Alphacoronavirus_1
27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
UNKNOWN_HQ012372_NA_ADL71502_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1
UU30_NA_ADO39854_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1
CCoV_NTU336_F_2008_M_ADB28912_1_2008_11_Taiwan_Dog_Alphacoronavirus_1
UU9_NA_ACT10975_1_2007_05_24_Netherlands_Cat_Alphacoronavirus_1
UU23_NA_ADC35477_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1
FCoVWSU791146_P8_M_AGZ84531_1_2011_USA_Cat_Alphacoronavirus_1
WH_1_M_ADY39744_1_NA_China_Swine_Alphacoronavirus_1
FIPV_79_1146_NA_AAY32598_1_NA_NA_Cat_Alphacoronavirus_1
UU21_NA_ADL71470_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1
HLJ_HRB_2016_11_NA_AUG98135_1_2016_11_China_Cat_Alphacoronavirus_1
TGEV_USA_Illinois149_2013_M_ASV64397_1_2013_02_28_USA_Unknown_Alphacoronavirus_1
SHXB_M_AKA60058_1_2013_03_07_China_Swine_Alphacoronavirus_1
Felix_NA_AXE71625_1_2012_07_Germany_Cat_Alphacoronavirus_1
UU22_NA_ADC35466_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1
DF_2_R3i_M_AFH55116_1_NA_NA_Cat_Alphacoronavirus_1
OH7269_M_AKV62759_1_2014_07_24_USA_Swine_Alphacoronavirus_1
TS_M_ABC72418_1_NA_NA_Swine_Alphacoronavirus_1
UU8_NA_ACT10900_1_2007_05_24_Netherlands_Cat_Alphacoronavirus_1
65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
TGEV_USA_Tennessee144_2008_M_ASV64353_1_2008_04_15_USA_Unknown_Alphacoronavirus_1
;
end;
begin trees;
translate
1 RM_NA_ACT10859_1_2002_01_28_USA_Cat_Alphacoronavirus_1,
2 TGEV_USA_Minnesota148_2013_M_ASV64388_1_2013_01_04_USA_Unknown_Alphacoronavirus_1,
3 TGEV_USA_Minnesota152_2014_M_ASV64424_1_2014_01_31_USA_Unknown_Alphacoronavirus_1,
4 79_1146_M_YP_004070198_1_NA_USA_Unknown_Alphacoronavirus_1,
5 TGEV_USA_Minnesota150_2013_M_ASV64406_1_2013_03_01_USA_Unknown_Alphacoronavirus_1,
6 AYU_NA_AEM55570_1_2009_China_Swine_Alphacoronavirus_1,
7 TGEV_USA_NorthCarolina142_2007_M_ASV64335_1_2007_02_16_USA_Unknown_Alphacoronavirus_1,
8 A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1,
9 CB_05_ORF5_AKA65834_1_2005_Italy_Dog_Alphacoronavirus_1,
10 TGEV_USA_Wisconsin151_2014_M_ASV64415_1_2014_01_17_USA_Unknown_Alphacoronavirus_1,
11 Cat1_day28_withoutdeletion_NA_AMD11202_1_2013_Belgium_Cat_Alphacoronavirus_1,
12 TGEV_USA_HB_1988_M_ASV64290_1_1988_USA_Unknown_Alphacoronavirus_1,
13 Cat1_day28_deletion_NA_AMD11191_1_2013_Belgium_Cat_Alphacoronavirus_1,
14 Cat1_day7_NA_AMD11147_1_2013_Belgium_Cat_Alphacoronavirus_1,
15 TH_98_NA_AML22781_1_1998_02_10_China_Swine_Alphacoronavirus_1,
16 UG_FH8_NA_ASU62493_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1,
17 TGEV_USA_Z_1986_M_ASV64281_1_2006_12_08_USA_Unknown_Alphacoronavirus_1,
18 DF_2_M_AFH55125_1_NA_NA_Cat_Alphacoronavirus_1,
19 Cat2_day21_withoutdeletion_NA_AMD11169_1_2013_Belgium_Cat_Alphacoronavirus_1,
20 UU16_NA_ACT10931_1_2007_06_07_Netherlands_Cat_Alphacoronavirus_1,
21 UU15_NA_ACT10921_1_2007_07_13_Netherlands_Cat_Alphacoronavirus_1,
22 FCoVWSU791146_P50_M_AGZ84541_1_2011_USA_Cat_Alphacoronavirus_1,
23 TGEV_Mex_145_2008_M_ASV64362_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1,
24 FCoV_C1Je_NA_ABI14450_1_NA_NA_Unknown_Alphacoronavirus_1,
25 UU19_NA_ADO39833_1_2007_08_23_Netherlands_Cat_Alphacoronavirus_1,
26 UU2_NA_ACT10953_1_1993_03_30_USA_Cat_Alphacoronavirus_1,
27 UU17_NA_ADL71449_1_2007_07_17_Netherlands_Cat_Alphacoronavirus_1,
28 Felis_catus_NLD_UU88_2010_M_AGT52085_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1,
29 H16_NA_ACN71200_1_1973_China_Swine_Alphacoronavirus_1,
30 UU4_NA_ACT10890_1_2007_02_02_Netherlands_Cat_Alphacoronavirus_1,
31 UU40_NA_ADO39822_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1,
32 HLJ_071_NA_ASB15743_1_2016_07_01_China_Dog_Alphacoronavirus_1,
33 UU47_NA_AEK25515_1_2010_07_14_Netherlands_Cat_Alphacoronavirus_1,
34 2020_15_ORF5_QQA04980_1_2020_United_Kingdom_Dog_Alphacoronavirus_1,
35 HLJ_DQ_2016_01_NA_ASB16892_1_2016_10_China_Cat_Alphacoronavirus_1,
36 UU7_NA_ACT10881_1_2007_04_25_Netherlands_Cat_Alphacoronavirus_1,
37 HLJ_072_NA_ASB15753_1_2016_07_01_China_Dog_Alphacoronavirus_1,
38 HLJ_HRB_2016_13_NA_AUG98146_1_2016_11_China_Cat_Alphacoronavirus_1,
39 ISU_1_NA_ABG89312_1_NA_USA_Swine_Alphacoronavirus_1,
40 attenuated_H_M_ABU49663_1_NA_China_Unknown_Alphacoronavirus_1,
41 XXN_NA_QDM36991_1_2018_04_China_Cat_Alphacoronavirus_1,
42 JS2012_M_AMB66492_1_2012_China_Swine_Alphacoronavirus_1,
43 K378_M_AFX81102_1_1978_USA_Dog_Alphacoronavirus_1,
44 partially_attenuated_Miller_M60_NA_ABG89308_1_1987_USA_Swine_Alphacoronavirus_1,
45 TGEV_USA_Illinois139_2006_M_ASV64308_1_2006_11_17_USA_Unknown_Alphacoronavirus_1,
46 virulent_Purdue_NA_ABG89329_1_1952_USA_Swine_Alphacoronavirus_1,
47 attenuated_Purdue_P115_NA_ABG89323_1_NA_NA_Swine_Alphacoronavirus_1,
48 171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1,
49 PRCV_USA_Minnesota_46140_2016_M_ASV45152_1_2016_11_01_USA_Unknown_Alphacoronavirus_1,
50 2020_7_ORF5_QQA04991_1_2020_United_Kingdom_Dog_Alphacoronavirus_1,
51 virulent_Miller_M6_NA_ABG89300_1_NA_USA_Swine_Alphacoronavirus_1,
52 26M_M_AJO27028_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
53 TGEV_AHHF_NA_AQT01353_1_2015_12_22_China_Swine_Alphacoronavirus_1,
54 Cat2_day21_deletion_NA_AMD11158_1_2013_Belgium_Cat_Alphacoronavirus_1,
55 80F_M_AJO27018_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
56 TGEV_USA_Illinois146_2008_M_ASV64371_1_2008_04_09_USA_Unknown_Alphacoronavirus_1,
57 HE_1_NA_APQ31246_1_2015_China_Swine_Alphacoronavirus_1,
58 67F_M_AJO27008_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
59 WSU_79_1683_NA_AFH58016_1_NA_NA_Unknown_Alphacoronavirus_1,
60 TGEV_USA_Minnesota153_2014_M_ASV64433_1_2014_02_04_USA_Unknown_Alphacoronavirus_1,
61 Cat2_day84_NA_AMD11213_1_2013_Belgium_Cat_Alphacoronavirus_1,
62 UU11_NA_ACT10870_1_2007_06_05_Netherlands_Cat_Alphacoronavirus_1,
63 TGEV_HX_NA_AGM75130_1_2012_05_05_China_Swine_Alphacoronavirus_1,
64 TGEV_USA_NorthCarolina140_2007_M_ASV64317_1_2007_02_08_USA_Unknown_Alphacoronavirus_1,
65 SeCoV_1480_Murcia_Lorca_gp7_QKV43717_1_2014_05_30_Spain_Swine_Alphacoronavirus_1,
66 HLJ_073_NA_ASB15761_1_2016_07_01_China_Dog_Alphacoronavirus_1,
67 27C_M_AJO26978_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
68 UNKNOWN_HQ012372_NA_ADL71502_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1,
69 UU30_NA_ADO39854_1_2008_01_22_Netherlands_Cat_Alphacoronavirus_1,
70 CCoV_NTU336_F_2008_M_ADB28912_1_2008_11_Taiwan_Dog_Alphacoronavirus_1,
71 UU9_NA_ACT10975_1_2007_05_24_Netherlands_Cat_Alphacoronavirus_1,
72 UU23_NA_ADC35477_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1,
73 FCoVWSU791146_P8_M_AGZ84531_1_2011_USA_Cat_Alphacoronavirus_1,
74 WH_1_M_ADY39744_1_NA_China_Swine_Alphacoronavirus_1,
75 FIPV_79_1146_NA_AAY32598_1_NA_NA_Cat_Alphacoronavirus_1,
76 UU21_NA_ADL71470_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1,
77 1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1,
78 23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1,
79 HLJ_HRB_2016_11_NA_AUG98135_1_2016_11_China_Cat_Alphacoronavirus_1,
80 TGEV_USA_Illinois149_2013_M_ASV64397_1_2013_02_28_USA_Unknown_Alphacoronavirus_1,
81 SHXB_M_AKA60058_1_2013_03_07_China_Swine_Alphacoronavirus_1,
82 Felix_NA_AXE71625_1_2012_07_Germany_Cat_Alphacoronavirus_1,
83 UU22_NA_ADC35466_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1,
84 DF_2_R3i_M_AFH55116_1_NA_NA_Cat_Alphacoronavirus_1,
85 OH7269_M_AKV62759_1_2014_07_24_USA_Swine_Alphacoronavirus_1,
86 TS_M_ABC72418_1_NA_NA_Swine_Alphacoronavirus_1,
87 UU8_NA_ACT10900_1_2007_05_24_Netherlands_Cat_Alphacoronavirus_1,
88 65F_M_AJO26998_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
89 28O_M_AJO26988_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
90 TGEV_USA_Tennessee144_2008_M_ASV64353_1_2008_04_15_USA_Unknown_Alphacoronavirus_1
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:5.423368e-02,(38:1.059336e-03,79:1.212097e-03)1.000:5.575223e-02,((((((((((((((((((2:1.104050e-03,5:2.920248e-03,80:2.882738e-03)0.983:2.794883e-03,56:1.253677e-03,90:1.071501e-03)0.983:2.861095e-03,7:1.128183e-03,45:1.264943e-03,64:2.820633e-03)0.988:4.284319e-03,(3:1.129499e-03,10:1.206082e-03,60:2.786102e-03)1.000:8.134182e-03)0.773:2.796062e-03,(49:1.175250e-02,85:1.888915e-02)0.983:4.860171e-03)1.000:1.277935e-02,39:6.254142e-03)1.000:1.548711e-02,65:4.802044e-02)0.877:4.450080e-03,((29:1.196360e-03,40:1.082966e-03)0.999:2.773075e-03,42:1.198872e-03,44:1.206865e-03,51:1.142259e-03,86:4.448499e-03)0.640:3.098383e-03)1.000:1.418137e-02,((6:2.784252e-03,(12:1.217369e-03,15:1.129618e-03,17:1.057058e-03,23:1.142895e-03,53:1.161310e-03,57:4.332946e-03)0.987:2.782869e-03,47:1.141004e-03,63:2.837188e-03,74:1.097244e-03,81:2.862614e-03)0.973:2.918639e-03,46:1.227881e-03)0.991:7.707839e-03)1.000:6.008742e-02,(32:1.142584e-03,37:1.249911e-03,66:1.226626e-03)1.000:3.345567e-02)0.940:1.586963e-02,(8:3.895871e-02,((((9:1.694394e-02,(43:1.198221e-03,77:1.148186e-03)1.000:2.866652e-02)1.000:2.871927e-02,34:2.346166e-02)0.992:1.165730e-02,70:6.111745e-02)1.000:1.816254e-02,50:4.709204e-02)0.900:9.598273e-03)0.525:7.177920e-03)1.000:6.936735e-02,78:1.305134e-01)1.000:1.070828e-01,59:9.954833e-02)1.000:1.514602e-01,82:8.363865e-02)0.902:3.773497e-02,(16:4.618955e-02,((25:6.056527e-03,27:1.839920e-02)1.000:7.239865e-02,(68:1.681113e-03,((72:1.530250e-03,76:8.914255e-03)0.605:2.578484e-03,83:1.344589e-03)0.910:5.228770e-03)1.000:2.778090e-02)0.976:1.913988e-02)0.962:1.453499e-02,(20:4.736484e-02,(24:4.031361e-02,(((52:1.129900e-03,67:1.123498e-03)0.938:2.737691e-03,55:1.134565e-03,88:1.073148e-03,89:2.690848e-03)0.713:2.711536e-03,58:1.552380e-03)1.000:3.841377e-02)1.000:3.378745e-02,(35:3.325009e-02,41:8.118956e-02)0.962:1.642051e-02)0.656:1.078739e-02,(21:8.021156e-02,(30:2.449584e-02,36:4.347477e-03)1.000:5.689833e-02)0.908:2.142633e-02,((28:1.214809e-02,33:1.990696e-02)1.000:4.442148e-02,(71:7.035554e-02,87:6.253252e-02)0.898:1.917859e-02)0.563:1.213334e-02,62:5.132281e-02)0.653:1.381825e-02,(31:1.300983e-02,69:6.201954e-03)1.000:4.716858e-02)0.785:1.928417e-02,((11:1.194667e-03,13:1.175767e-03,14:1.114653e-03)0.655:2.446147e-03,((19:1.162328e-03,54:1.138665e-03,61:2.681535e-03)0.962:2.870254e-03,26:1.174326e-03)0.552:2.179153e-03)1.000:7.373720e-02)0.902:2.341766e-02,(4:1.086719e-03,18:1.147344e-03,22:1.064781e-03,48:1.135700e-03,73:1.208580e-03,75:1.262212e-03,84:2.873992e-03)1.000:5.151860e-02)0.885:1.788051e-02);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:5.423368e-02,(38:1.059336e-03,79:1.212097e-03):5.575223e-02,((((((((((((((((((2:1.104050e-03,5:2.920248e-03,80:2.882738e-03):2.794883e-03,56:1.253677e-03,90:1.071501e-03):2.861095e-03,7:1.128183e-03,45:1.264943e-03,64:2.820633e-03):4.284319e-03,(3:1.129499e-03,10:1.206082e-03,60:2.786102e-03):8.134182e-03):2.796062e-03,(49:1.175250e-02,85:1.888915e-02):4.860171e-03):1.277935e-02,39:6.254142e-03):1.548711e-02,65:4.802044e-02):4.450080e-03,((29:1.196360e-03,40:1.082966e-03):2.773075e-03,42:1.198872e-03,44:1.206865e-03,51:1.142259e-03,86:4.448499e-03):3.098383e-03):1.418137e-02,((6:2.784252e-03,(12:1.217369e-03,15:1.129618e-03,17:1.057058e-03,23:1.142895e-03,53:1.161310e-03,57:4.332946e-03):2.782869e-03,47:1.141004e-03,63:2.837188e-03,74:1.097244e-03,81:2.862614e-03):2.918639e-03,46:1.227881e-03):7.707839e-03):6.008742e-02,(32:1.142584e-03,37:1.249911e-03,66:1.226626e-03):3.345567e-02):1.586963e-02,(8:3.895871e-02,((((9:1.694394e-02,(43:1.198221e-03,77:1.148186e-03):2.866652e-02):2.871927e-02,34:2.346166e-02):1.165730e-02,70:6.111745e-02):1.816254e-02,50:4.709204e-02):9.598273e-03):7.177920e-03):6.936735e-02,78:1.305134e-01):1.070828e-01,59:9.954833e-02):1.514602e-01,82:8.363865e-02):3.773497e-02,(16:4.618955e-02,((25:6.056527e-03,27:1.839920e-02):7.239865e-02,(68:1.681113e-03,((72:1.530250e-03,76:8.914255e-03):2.578484e-03,83:1.344589e-03):5.228770e-03):2.778090e-02):1.913988e-02):1.453499e-02,(20:4.736484e-02,(24:4.031361e-02,(((52:1.129900e-03,67:1.123498e-03):2.737691e-03,55:1.134565e-03,88:1.073148e-03,89:2.690848e-03):2.711536e-03,58:1.552380e-03):3.841377e-02):3.378745e-02,(35:3.325009e-02,41:8.118956e-02):1.642051e-02):1.078739e-02,(21:8.021156e-02,(30:2.449584e-02,36:4.347477e-03):5.689833e-02):2.142633e-02,((28:1.214809e-02,33:1.990696e-02):4.442148e-02,(71:7.035554e-02,87:6.253252e-02):1.917859e-02):1.213334e-02,62:5.132281e-02):1.381825e-02,(31:1.300983e-02,69:6.201954e-03):4.716858e-02):1.928417e-02,((11:1.194667e-03,13:1.175767e-03,14:1.114653e-03):2.446147e-03,((19:1.162328e-03,54:1.138665e-03,61:2.681535e-03):2.870254e-03,26:1.174326e-03):2.179153e-03):7.373720e-02):2.341766e-02,(4:1.086719e-03,18:1.147344e-03,22:1.064781e-03,48:1.135700e-03,73:1.208580e-03,75:1.262212e-03,84:2.873992e-03):5.151860e-02):1.788051e-02);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -3912.93 -3943.66
2 -3912.49 -3940.39
--------------------------------------
TOTAL -3912.68 -3943.01
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.345104 0.011613 1.145441 1.564780 1.338044 932.30 1121.70 1.000
r(A<->C){all} 0.099136 0.000342 0.064149 0.135875 0.098077 694.89 847.81 1.000
r(A<->G){all} 0.266771 0.000812 0.214946 0.324433 0.266261 542.94 625.13 1.000
r(A<->T){all} 0.098559 0.000197 0.072518 0.126834 0.097827 784.19 802.34 1.000
r(C<->G){all} 0.065230 0.000298 0.034851 0.101220 0.063768 692.86 755.69 1.000
r(C<->T){all} 0.412590 0.001024 0.350835 0.477594 0.412553 683.28 702.99 1.000
r(G<->T){all} 0.057714 0.000146 0.034008 0.081254 0.057307 885.36 903.57 1.000
pi(A){all} 0.281318 0.000197 0.254128 0.307721 0.281212 873.84 888.85 1.000
pi(C){all} 0.181027 0.000135 0.159743 0.205800 0.180691 759.56 809.47 1.000
pi(G){all} 0.213200 0.000169 0.186706 0.236844 0.213186 835.31 988.44 1.000
pi(T){all} 0.324455 0.000203 0.297187 0.351850 0.323977 959.16 978.77 1.000
alpha{1,2} 0.228248 0.001116 0.166583 0.292692 0.224771 1081.73 1196.46 1.000
alpha{3} 2.187992 0.521467 0.987191 3.555824 2.071921 1262.85 1381.93 1.000
pinvar{all} 0.301408 0.002730 0.196323 0.397292 0.304387 991.01 1051.83 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
[2J[H /HYPHY 2.3.14.20190214beta(MP) for Linux on x86_64\ ***************** TYPES OF STANDARD ANALYSES ***************** (1) Selection Analyses (2) Evolutionary Hypothesis Testing (3) Relative evolutionary rate inference (4) Coevolutionary analysis (5) Basic Analyses (6) Codon Selection Analyses (7) Compartmentalization (8) Data File Tools (9) Miscellaneous (10) Model Comparison (11) Kernel Analysis Tools (12) Molecular Clock (13) Phylogeny Reconstruction (14) Positive Selection (15) Recombination (16) Selection/Recombination (17) Relative Rate (18) Relative Ratio (19) Substitution Rates Please select type of analyses you want to list (or press ENTER to process custom batch file):[2J[H***************** FILES IN 'Selection Analyses' ***************** (1) [MEME] Test for episodic site-level selection using MEME (Mixed Effects Model of Evolution). (2) [FEL] Test for pervasive site-level selection using FEL (Fixed Effects Likelihood). (3) [SLAC] Test for pervasive site-level selection using SLAC (Single Likelihood Ancestor Counting). (4) [FUBAR] Test for pervasive site-level selection using FUBAR (Fast Unconstrained Bayesian AppRoximation for inferring selection). (5) [BUSTED] Test for episodic gene-wide selection using BUSTED (Branch-site Unrestricted Statistical Test of Episodic Diversification). (6) [aBSREL] Test for lineage-specific evolution using the branch-site method aBS-REL (Adaptive Branch-Site Random Effects Likelihood). (7) [RELAX] Test for relaxation of selection pressure along a specified set of test branches using RELAX (a random effects test of selection relaxation). Please select the analysis you would like to perform (or press ENTER to return to the list of analysis types): Analysis Description -------------------- Perform a Fast Unbiased AppRoximate Bayesian (FUBAR) analysis of a coding sequence alignment to determine whether some sites have been subject to pervasive purifying or diversifying selection. v2.1 introduces two more methods for estimating the posterior distribution of grid weights: collapsed Gibbs MCMC (faster) and 0-th order Variation Bayes approximation (fastest). Please note that a FUBAR analysis generates a cache and a results JSON file in the same directory as directory as the original alignment. HyPhy needs to have write privileges to this directory. For example if the original file is in /home/sergei/FUBAR/data/pol.nex then at the end of a FUBAR run, there will also exist FUBAR-generated files /home/sergei/FUBAR/data/pol.nex.FUBAR.json, /home/sergei/FUBAR/data/pol.nex.fubrar.cache. They also provide checkpointing so that a partially completed analysis can be restarted. - __Requirements__: in-frame codon alignment (possibly partitioned) and a phylogenetic tree (one per partition) - __Citation__: FUBAR: a fast, unconstrained bayesian approximation for inferring selection (2013), Mol Biol Evol. 30(5):1196-205 - __Written by__: Sergei L Kosakovsky Pond - __Contact Information__: spond@temple.edu - __Analysis Version__: 2.1 ####Choose Genetic Code 1. [**Universal**] Universal code. (Genebank transl_table=1). 2. [**Vertebrate mtDNA**] Vertebrate mitochondrial DNA code. (Genebank transl_table=2). 3. [**Yeast mtDNA**] Yeast mitochondrial DNA code. (Genebank transl_table=3). 4. [**Mold/Protozoan mtDNA**] Mold, Protozoan and Coelenterate mitochondrial DNA and the Mycloplasma/Spiroplasma code. (Genebank transl_table=4). 5. [**Invertebrate mtDNA**] Invertebrate mitochondrial DNA code. (Genebank transl_table=5). 6. [**Ciliate Nuclear**] Ciliate, Dasycladacean and Hexamita Nuclear code. (Genebank transl_table=6). 7. [**Echinoderm mtDNA**] Echinoderm mitochondrial DNA code. (Genebank transl_table=9). 8. [**Euplotid Nuclear**] Euplotid Nuclear code. (Genebank transl_table=10). 9. [**Alt. Yeast Nuclear**] Alternative Yeast Nuclear code. (Genebank transl_table=12). 10. [**Ascidian mtDNA**] Ascidian mitochondrial DNA code. (Genebank transl_table=13). 11. [**Flatworm mtDNA**] Flatworm mitochondrial DNA code. (Genebank transl_table=14). 12. [**Blepharisma Nuclear**] Blepharisma Nuclear code. (Genebank transl_table=15). 13. [**Chlorophycean mtDNA**] Chlorophycean Mitochondrial Code (transl_table=16). 14. [**Trematode mtDNA**] Trematode Mitochondrial Code (transl_table=21). 15. [**Scenedesmus obliquus mtDNA**] Scenedesmus obliquus mitochondrial Code (transl_table=22). 16. [**Thraustochytrium mtDNA**] Thraustochytrium Mitochondrial Code (transl_table=23). 17. [**Pterobranchia mtDNA**] Pterobranchia Mitochondrial Code (transl_table=24). 18. [**SR1 and Gracilibacteria**] Candidate Division SR1 and Gracilibacteria Code (transl_table=25). 19. [**Pachysolen Nuclear**] Pachysolen tannophilus Nuclear Code (transl_table=26). >Please choose an option (or press q to cancel selection): >Select a coding sequence alignment file (`/usr/local/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/`) >A tree was found in the data file: `(C52,(C42,C43),((((((((((((((((((C67,C68,C63),C61,C74),C70,C60,C72),(C66,C75,C69)),(C49,C47)),C44),C55),((C35,C102),C46,C104,C106,C80)),((C14,(C59,C77,C76,C58,C56,C36),C103,C57,C100,C54),C105)),(C37,C39,C38)),(C13,((((C16,(C48,C2)),C3),C17),C4))),C5),C99),C34),(C78,((C86,C85),(C81,((C90,C88),C89)))),(C84,(C30,(((C6,C7),C12,C9,C8),C10)),(C40,C101)),(C83,(C93,C96)),((C33,C94),(C98,C97)),C82),(C92,C91)),((C19,C18,C20),((C22,C21,C23),C87))),(C11,C25,C28,C1,C27,C32,C26)))` >Would you like to use it (y/n)? >Loaded a multiple sequence alignment with **90** sequences, **299** codons, and **1** partitions from `/data//pss_subsets/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1.fna` > FUBAR will write cache and result files to _/data//pss_subsets/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1.fna.FUBAR.cache_ and _/data//pss_subsets/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/fubar/results/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1.fna.FUBAR.json_, respectively > Number of grid points per dimension (total number is D^2) (permissible range = [5,50], default value = 20, integer): ####Posterior estimation method 1. [**Metropolis-Hastings**] Full Metropolis-Hastings MCMC algorithm (slowest, original 2013 paper implementation) 2. [**Collapsed Gibbs**] Collapsed Gibbs sampler (intermediate speed) 3. [**Variational Bayes**] 0-th order Variational Bayes approximations (fastest, recommended default) >Please choose an option (or press q to cancel selection):> The concentration parameter of the Dirichlet prior (permissible range = [0.001,1], default value = 0.5): ### Obtaining branch lengths and nucleotide substitution biases under the nucleotide GTR model * Log(L) = -8207.64, AIC-c = 16723.87 (154 estimated parameters) * Tree length (expected substitutions/site) for partition 1 : 1.717 ### Computing the phylogenetic likelihood function on the grid * Determining appropriate tree scaling based on the best score from a 20 x 20 rate grid * Best scaling achieved for * synonymous rate = 2.815 * non-synonymous rate = 0.500 * Computing conditional site likelihoods on a 20 x 20 rate grid ### Running an iterative zeroth order variational Bayes procedure to estimate the posterior mean of rate weights * Using the following settings * Dirichlet alpha : 0.5 ### Tabulating site-level results | Codon | Partition | alpha | beta |Posterior prob for positive selection| |:--------------:|:--------------:|:--------------:|:--------------:|:-----------------------------------:| | 30 | 1 | 0.353 | 2.677 | Pos. posterior = 0.9934 | | 42 | 1 | 0.912 | 2.906 | Pos. posterior = 0.9003 | | 72 | 1 | 0.463 | 7.385 | Pos. posterior = 0.9992 | ---- ## FUBAR inferred 3 sites subject to diversifying positive selection at posterior probability >= 0.9 Of these, 0.11 are expected to be false positives (95% confidence interval of 0-1 )
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
