--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1979.62 -2005.41
2 -1977.28 -2004.43
--------------------------------------
TOTAL -1977.88 -2005.04
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.110170 0.000264 0.081013 0.144492 0.109419 1301.54 1344.95 1.000
r(A<->C){all} 0.034502 0.000439 0.001374 0.075541 0.030472 795.21 873.60 1.000
r(A<->G){all} 0.207047 0.002343 0.118096 0.302398 0.203635 759.69 800.57 1.003
r(A<->T){all} 0.043985 0.000347 0.011201 0.080956 0.041569 757.83 833.82 1.000
r(C<->G){all} 0.040611 0.000598 0.001919 0.086256 0.036345 706.68 767.34 1.000
r(C<->T){all} 0.592246 0.003551 0.484503 0.711460 0.593104 534.91 653.19 1.002
r(G<->T){all} 0.081609 0.000787 0.030493 0.135182 0.078374 693.23 803.88 1.000
pi(A){all} 0.266863 0.000188 0.241633 0.294891 0.266647 1194.93 1268.35 1.001
pi(C){all} 0.180152 0.000136 0.157817 0.201506 0.179876 1151.22 1205.06 1.001
pi(G){all} 0.225925 0.000163 0.200594 0.250634 0.225873 1014.69 1068.63 1.000
pi(T){all} 0.327061 0.000204 0.300087 0.354861 0.326824 1027.53 1073.86 1.000
alpha{1,2} 0.124747 0.022632 0.000022 0.331568 0.093349 695.46 978.02 1.000
alpha{3} 2.230032 1.711795 0.275308 4.829825 1.954520 695.54 928.03 1.000
pinvar{all} 0.593504 0.009839 0.397407 0.767350 0.608379 589.66 778.49 1.001
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -1897.760478
Model 2: PositiveSelection -1897.170569
Model 7: beta -1897.802109
Model 8: beta&w>1 -1897.178734
Model 2 vs 1 1.179818
Model 8 vs 7 1.246750
-- Starting log on Thu Nov 17 16:36:34 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/LZW_nsp12_VIPR_ALG4_672096717_18715_19731_1_2012_02_China_Unknown_PEDV.result--
-- Starting log on Thu Nov 17 16:38:47 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/LZW_nsp12_VIPR_ALG4_672096717_18715_19731_1_2012_02_China_Unknown_PEDV.result--
-- Starting log on Fri Nov 18 00:43:57 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/LZW_nsp12_VIPR_ALG4_672096717_18715_19731_1_2012_02_China_Unknown_PEDV.result/gapped_alignment/codeml,LZW_nsp12_VIPR_ALG4_672096717_18715_19731_1_2012_02_China_Unknown_PEDV.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 30 taxa and 1017 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C321
Taxon 2 -> C66
Taxon 3 -> C313
Taxon 4 -> C257
Taxon 5 -> C327
Taxon 6 -> C72
Taxon 7 -> C532
Taxon 8 -> C230
Taxon 9 -> C78
Taxon 10 -> C305
Taxon 11 -> C212
Taxon 12 -> C105
Taxon 13 -> C316
Taxon 14 -> C549
Taxon 15 -> C561
Taxon 16 -> C370
Taxon 17 -> C181
Taxon 18 -> C112
Taxon 19 -> C601
Taxon 20 -> C139
Taxon 21 -> C423
Taxon 22 -> C32
Taxon 23 -> C453
Taxon 24 -> C597
Taxon 25 -> C388
Taxon 26 -> C130
Taxon 27 -> C427
Taxon 28 -> C233
Taxon 29 -> C136
Taxon 30 -> C29
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1668732239
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 1307380984
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 1715927920
Seed = 946993738
Swapseed = 1668732239
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 14 unique site patterns
Division 2 has 12 unique site patterns
Division 3 has 42 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -3426.269731 -- 82.122948
Chain 2 -- -3391.203919 -- 82.122948
Chain 3 -- -3425.714923 -- 82.122948
Chain 4 -- -3281.362129 -- 82.122948
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -3358.582053 -- 82.122948
Chain 2 -- -3432.424172 -- 82.122948
Chain 3 -- -3440.576348 -- 82.122948
Chain 4 -- -3352.427572 -- 82.122948
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-3426.270] (-3391.204) (-3425.715) (-3281.362) * [-3358.582] (-3432.424) (-3440.576) (-3352.428)
1000 -- (-2129.883) [-2065.636] (-2118.499) (-2086.860) * (-2079.052) (-2134.766) (-2278.218) [-2042.479] -- 0:16:39
2000 -- (-2073.324) (-2052.044) (-2053.267) [-2029.869] * (-2055.624) [-2021.552] (-2108.872) (-2007.704) -- 0:16:38
3000 -- (-2021.528) (-2034.963) (-2019.407) [-2010.013] * (-2039.563) [-2017.646] (-2059.812) (-1998.646) -- 0:16:37
4000 -- (-1999.161) (-2006.165) (-2016.587) [-1998.428] * (-2019.260) [-1993.114] (-2005.747) (-1996.447) -- 0:16:36
5000 -- (-1988.068) (-2013.845) [-1996.993] (-2011.770) * (-2022.752) (-2002.211) [-1999.784] (-1997.066) -- 0:16:35
Average standard deviation of split frequencies: 0.080329
6000 -- (-1996.755) (-2007.576) [-1986.805] (-2009.310) * (-2002.552) (-2011.585) (-1988.635) [-1996.679] -- 0:16:34
7000 -- (-2015.622) [-1990.363] (-1994.261) (-2003.690) * (-2001.528) (-1994.321) (-1999.984) [-1992.363] -- 0:18:54
8000 -- (-2024.612) (-1997.208) [-1982.419] (-1988.741) * (-2014.156) (-1994.268) (-1999.762) [-1984.215] -- 0:18:36
9000 -- [-1997.761] (-1994.628) (-1993.497) (-2007.579) * (-2028.463) (-1998.490) (-2003.210) [-1998.014] -- 0:18:21
10000 -- (-1999.709) (-2011.530) (-1986.274) [-2001.574] * (-1997.076) (-2001.405) (-2005.689) [-1989.493] -- 0:18:09
Average standard deviation of split frequencies: 0.090460
11000 -- (-2006.697) (-1997.669) [-1999.045] (-1989.687) * [-1991.262] (-2003.802) (-2009.588) (-1988.348) -- 0:17:58
12000 -- [-1994.532] (-1990.517) (-2014.556) (-1995.030) * (-1982.469) (-1992.780) (-1999.900) [-1994.201] -- 0:17:50
13000 -- (-1998.277) (-1994.601) (-1998.003) [-1989.870] * (-1996.289) (-1999.717) [-1998.133] (-1998.198) -- 0:17:42
14000 -- [-1980.448] (-1993.227) (-1996.947) (-2012.437) * (-2006.064) (-1994.479) (-2011.198) [-1983.227] -- 0:17:36
15000 -- [-1979.042] (-2003.745) (-2002.484) (-2000.825) * (-1995.397) [-2000.878] (-1992.532) (-1993.410) -- 0:17:30
Average standard deviation of split frequencies: 0.081456
16000 -- (-1992.564) (-2010.431) [-1981.251] (-2012.765) * [-1994.505] (-1995.058) (-1996.281) (-1989.279) -- 0:17:25
17000 -- (-1987.409) (-1987.433) (-1996.006) [-1982.501] * (-1997.556) [-1981.654] (-1990.077) (-2010.210) -- 0:17:20
18000 -- (-1993.913) [-1986.660] (-2014.624) (-1995.509) * [-1988.451] (-1983.326) (-1989.559) (-1995.570) -- 0:17:16
19000 -- (-1990.618) [-1982.441] (-1987.817) (-2006.892) * (-2001.895) (-2005.318) [-1988.635] (-2001.793) -- 0:18:04
20000 -- (-1996.884) (-1999.942) (-2000.993) [-1987.594] * (-1994.369) [-1993.920] (-1995.003) (-2002.423) -- 0:17:58
Average standard deviation of split frequencies: 0.078124
21000 -- (-2011.015) (-1993.196) (-1987.632) [-1987.862] * (-2008.501) [-1993.193] (-1996.665) (-1994.947) -- 0:17:52
22000 -- (-2002.123) (-1998.417) [-1982.039] (-1992.911) * (-1994.134) (-1991.345) (-1990.984) [-1987.021] -- 0:17:46
23000 -- (-1990.358) (-2004.726) [-1985.158] (-1977.720) * [-1988.985] (-2002.131) (-1992.942) (-1985.622) -- 0:17:41
24000 -- (-1988.988) (-1998.772) (-2003.321) [-1987.605] * (-1998.721) (-2006.650) [-1985.285] (-1992.068) -- 0:17:37
25000 -- (-2013.872) (-1983.895) (-2008.233) [-1987.347] * [-1989.683] (-1999.699) (-2007.802) (-2000.972) -- 0:17:33
Average standard deviation of split frequencies: 0.070159
26000 -- (-2007.505) [-1990.252] (-1994.007) (-2008.029) * (-1994.454) (-1993.268) [-1987.194] (-1991.642) -- 0:17:28
27000 -- (-2004.079) (-2000.809) [-1991.775] (-2000.271) * (-1995.115) (-1999.021) [-1987.855] (-2001.064) -- 0:17:25
28000 -- (-2006.101) [-1994.807] (-2007.858) (-2007.255) * (-2000.936) (-1995.225) (-2000.459) [-1985.560] -- 0:17:21
29000 -- (-1991.869) [-1989.749] (-2013.632) (-2005.719) * (-1992.000) (-1989.232) [-1989.297] (-1985.418) -- 0:17:17
30000 -- (-1987.302) [-1985.203] (-2014.841) (-1982.163) * (-1991.156) (-2004.795) [-1990.094] (-1989.986) -- 0:17:14
Average standard deviation of split frequencies: 0.062670
31000 -- [-1986.321] (-1986.905) (-2012.689) (-1987.617) * (-2000.522) (-2009.188) (-1977.317) [-1985.441] -- 0:17:11
32000 -- (-2000.612) [-1993.940] (-1991.045) (-1990.722) * (-2002.779) (-1989.649) (-1990.493) [-1978.811] -- 0:16:38
33000 -- (-2001.337) (-1995.247) [-1997.615] (-1999.548) * [-1990.372] (-1992.251) (-2005.471) (-1993.478) -- 0:16:36
34000 -- [-1995.324] (-1998.763) (-2014.857) (-2000.339) * (-1995.450) [-1991.098] (-1995.541) (-1989.705) -- 0:16:34
35000 -- [-1989.985] (-1992.649) (-1996.892) (-1986.029) * [-1982.194] (-2015.818) (-1986.228) (-1994.730) -- 0:16:32
Average standard deviation of split frequencies: 0.057990
36000 -- (-1994.662) (-2001.853) (-2008.033) [-1994.585] * (-1995.501) (-2000.930) (-1989.069) [-1984.097] -- 0:16:04
37000 -- [-1981.558] (-2001.449) (-1997.002) (-1983.923) * [-1989.076] (-1990.853) (-1994.478) (-1993.706) -- 0:16:03
38000 -- (-1986.173) (-1993.599) (-2020.331) [-1997.604] * (-2003.432) (-2004.883) [-1987.159] (-1995.459) -- 0:16:02
39000 -- [-1985.321] (-2001.940) (-1996.531) (-1986.907) * (-1988.715) (-1999.425) [-1988.982] (-1992.430) -- 0:15:36
40000 -- (-1998.145) (-1990.989) (-1994.576) [-2006.402] * (-2008.778) (-1994.825) (-2000.886) [-1994.703] -- 0:15:36
Average standard deviation of split frequencies: 0.050118
41000 -- (-2006.039) (-1992.224) [-1989.457] (-1994.933) * (-1985.329) (-1984.773) (-2000.211) [-1986.112] -- 0:15:35
42000 -- (-1996.486) (-1992.945) [-1980.567] (-2004.132) * (-1989.160) [-1997.479] (-1992.102) (-1999.764) -- 0:15:12
43000 -- (-2005.888) (-1997.011) [-1985.473] (-1991.675) * (-1990.393) (-1984.978) [-1989.003] (-1991.353) -- 0:15:12
44000 -- (-1995.801) [-1994.078] (-1999.636) (-1989.170) * [-1991.780] (-2000.790) (-1988.647) (-1987.720) -- 0:15:12
45000 -- (-2002.645) [-1994.675] (-2005.325) (-1986.675) * (-1995.848) (-2003.229) [-1992.091] (-1987.850) -- 0:15:12
Average standard deviation of split frequencies: 0.055510
46000 -- (-1995.002) (-2008.145) [-1988.148] (-1989.545) * (-1997.981) [-1996.055] (-1995.686) (-1997.022) -- 0:14:51
47000 -- (-1989.044) (-2005.597) (-1990.693) [-1978.590] * (-1992.964) [-1991.425] (-2000.734) (-1994.690) -- 0:14:52
48000 -- [-1985.167] (-1987.639) (-1992.982) (-1993.833) * [-1998.408] (-1997.588) (-2001.751) (-1984.585) -- 0:14:52
49000 -- [-1990.904] (-1999.107) (-2003.670) (-1997.138) * (-1995.784) (-1996.111) [-1998.338] (-2006.082) -- 0:14:33
50000 -- (-1979.025) (-2001.331) (-2000.567) [-1985.678] * (-2003.452) (-1999.799) [-1985.280] (-2000.815) -- 0:14:34
Average standard deviation of split frequencies: 0.057685
51000 -- (-1994.969) [-1987.469] (-1988.642) (-1988.739) * (-2009.295) (-2000.301) (-1983.776) [-1992.165] -- 0:14:34
52000 -- (-1994.017) (-1992.113) (-2001.284) [-1994.467] * (-2001.205) (-1997.299) (-1988.377) [-2000.143] -- 0:14:16
53000 -- (-1987.421) (-2003.167) (-2003.582) [-1989.404] * (-1988.240) (-2003.023) [-1984.453] (-1993.922) -- 0:14:17
54000 -- (-1987.417) (-2003.755) (-2013.518) [-1985.487] * (-1988.908) (-1999.487) (-2009.322) [-1983.364] -- 0:14:18
55000 -- (-2013.973) (-1999.061) [-1989.649] (-1993.877) * (-1980.342) (-1999.181) (-1994.730) [-1982.508] -- 0:14:01
Average standard deviation of split frequencies: 0.051911
56000 -- [-1988.573] (-1994.021) (-1998.063) (-2001.034) * (-1999.368) (-1993.056) (-1981.536) [-1982.522] -- 0:14:02
57000 -- (-1990.411) [-1991.025] (-1985.760) (-2006.047) * (-1999.266) (-2004.303) [-1981.103] (-1994.925) -- 0:14:03
58000 -- [-1989.088] (-2001.831) (-1988.010) (-2004.192) * (-2007.529) (-1993.796) [-1997.525] (-2000.758) -- 0:14:04
59000 -- [-1985.168] (-1987.320) (-2004.034) (-1990.531) * [-1996.895] (-1995.300) (-2008.026) (-1993.578) -- 0:13:49
60000 -- (-1985.611) [-2001.641] (-2001.316) (-1992.565) * (-2000.026) [-1985.468] (-2003.048) (-1989.946) -- 0:13:50
Average standard deviation of split frequencies: 0.048177
61000 -- (-2004.392) (-2002.825) (-2002.070) [-1994.454] * (-1985.447) [-1994.089] (-2001.779) (-1989.525) -- 0:13:51
62000 -- (-2006.659) (-1998.014) (-1993.096) [-1994.672] * (-1992.364) (-1999.761) [-1988.433] (-1997.142) -- 0:13:36
63000 -- (-1992.301) [-1987.262] (-1996.573) (-1995.239) * (-1999.722) (-1987.285) [-1989.867] (-1989.404) -- 0:13:38
64000 -- (-1992.027) (-1997.892) (-1991.195) [-1996.247] * (-2006.413) [-1989.665] (-1989.318) (-1981.462) -- 0:13:39
65000 -- [-1996.874] (-2005.185) (-1997.593) (-2015.746) * (-1997.007) (-1996.519) (-1997.223) [-1982.842] -- 0:13:39
Average standard deviation of split frequencies: 0.039182
66000 -- [-2005.447] (-2001.632) (-2002.828) (-2007.605) * (-1996.047) (-2013.001) (-1986.510) [-1992.002] -- 0:13:26
67000 -- (-2000.428) (-1996.383) (-1991.599) [-2004.109] * (-1988.033) [-1996.364] (-2004.470) (-1996.104) -- 0:13:27
68000 -- (-2005.922) (-2004.496) [-1995.640] (-1998.413) * (-1989.466) (-1995.152) [-1973.926] (-1994.203) -- 0:13:28
69000 -- [-2000.916] (-2000.269) (-1985.658) (-2003.409) * (-2005.743) (-2000.081) [-1986.946] (-1994.598) -- 0:13:16
70000 -- [-1984.682] (-2005.972) (-1993.763) (-1985.710) * (-1999.571) [-1978.842] (-1993.917) (-1989.678) -- 0:13:17
Average standard deviation of split frequencies: 0.035982
71000 -- (-1984.624) (-2024.460) (-2000.645) [-1995.328] * [-1982.705] (-1993.687) (-1990.952) (-2003.242) -- 0:13:18
72000 -- (-1990.173) (-2006.093) [-1994.826] (-2000.302) * (-1994.168) (-1987.468) (-2000.212) [-1983.382] -- 0:13:06
73000 -- (-2007.246) (-2010.046) (-1995.207) [-1991.625] * (-1990.514) (-2003.867) [-1989.086] (-2009.652) -- 0:13:07
74000 -- [-1999.508] (-1997.128) (-2005.126) (-1986.342) * (-1993.451) (-1980.967) (-1988.391) [-1995.502] -- 0:13:08
75000 -- [-1987.736] (-1997.153) (-2000.078) (-1999.155) * [-1996.574] (-1988.832) (-1993.010) (-2003.630) -- 0:12:57
Average standard deviation of split frequencies: 0.031201
76000 -- [-1983.572] (-2006.480) (-1995.895) (-1999.685) * [-1983.434] (-1999.275) (-2002.902) (-2001.409) -- 0:12:58
77000 -- [-1996.194] (-1990.658) (-1991.936) (-1986.899) * [-1986.665] (-1983.007) (-1993.163) (-2002.059) -- 0:12:59
78000 -- (-1995.371) [-1992.810] (-2007.258) (-2002.216) * [-1985.258] (-1988.516) (-2000.529) (-2001.596) -- 0:13:00
79000 -- (-2005.321) [-1999.982] (-1987.209) (-1998.505) * [-1990.005] (-1989.907) (-1990.058) (-2010.704) -- 0:12:49
80000 -- (-2003.253) (-2000.445) (-2008.259) [-1987.612] * (-1999.003) (-1995.499) [-1995.142] (-2004.011) -- 0:12:50
Average standard deviation of split frequencies: 0.029585
81000 -- [-1991.417] (-1999.470) (-1995.851) (-1992.415) * [-1979.908] (-2008.771) (-2003.684) (-1996.476) -- 0:12:51
82000 -- (-1993.771) (-1998.104) (-1999.388) [-1983.030] * (-1991.724) (-2007.690) (-1993.756) [-1979.516] -- 0:12:41
83000 -- (-2006.995) (-1988.882) (-1990.392) [-1986.430] * [-1997.938] (-2001.785) (-1991.688) (-2002.092) -- 0:12:42
84000 -- (-2001.312) [-1990.845] (-1998.062) (-1999.052) * (-2003.832) (-1998.674) [-1994.005] (-2003.901) -- 0:12:43
85000 -- (-1995.109) (-2020.549) (-1989.604) [-1996.701] * (-1983.920) (-2000.619) [-1989.455] (-2003.900) -- 0:12:33
Average standard deviation of split frequencies: 0.034430
86000 -- (-1995.962) [-1991.748] (-2006.135) (-1996.383) * (-1995.873) [-1999.205] (-1983.861) (-1993.491) -- 0:12:34
87000 -- (-2007.722) [-1985.250] (-2022.949) (-1992.712) * (-1997.164) (-1997.996) (-2003.311) [-1984.142] -- 0:12:35
88000 -- (-2013.314) [-1994.944] (-2003.606) (-1996.771) * [-1992.034] (-2004.134) (-2008.007) (-2000.722) -- 0:12:36
89000 -- (-2019.536) [-2000.729] (-2000.972) (-1993.649) * (-1982.734) (-2011.543) [-1997.486] (-1987.577) -- 0:12:27
90000 -- (-2015.505) (-1990.114) (-2005.002) [-1986.778] * (-2001.111) (-2010.409) [-1981.959] (-1984.946) -- 0:12:28
Average standard deviation of split frequencies: 0.032496
91000 -- (-1992.578) (-1989.512) [-2006.803] (-1993.882) * (-1990.630) (-2003.312) [-1985.687] (-1987.318) -- 0:12:29
92000 -- (-1989.181) (-2004.693) (-2001.454) [-1997.933] * (-2002.893) (-1991.650) [-1989.509] (-2003.450) -- 0:12:20
93000 -- [-1979.116] (-2002.219) (-2027.924) (-1991.206) * (-1996.649) [-1984.369] (-2000.936) (-1986.047) -- 0:12:21
94000 -- (-1987.415) [-1998.090] (-1999.542) (-1999.768) * (-1990.145) (-1982.532) (-1999.682) [-1986.123] -- 0:12:22
95000 -- (-1987.798) (-2000.059) [-1987.314] (-2001.593) * (-2000.010) (-2000.176) (-1987.257) [-1990.215] -- 0:12:23
Average standard deviation of split frequencies: 0.031918
96000 -- (-1988.420) [-1993.825] (-1986.811) (-1997.373) * (-1985.674) (-1992.040) [-1995.317] (-2002.407) -- 0:12:14
97000 -- [-1987.173] (-1999.003) (-2006.624) (-2019.144) * (-1988.655) (-2008.725) [-1986.028] (-1995.206) -- 0:12:15
98000 -- (-1989.240) (-2002.546) [-1992.975] (-1991.414) * [-1985.628] (-1994.589) (-1995.444) (-1993.748) -- 0:12:16
99000 -- (-2002.693) [-1986.655] (-1984.366) (-2001.977) * (-1996.571) (-2000.105) [-1997.410] (-1998.572) -- 0:12:08
100000 -- (-1995.771) [-1987.765] (-1994.409) (-1981.469) * [-1985.289] (-2000.822) (-1992.799) (-1998.746) -- 0:12:09
Average standard deviation of split frequencies: 0.033950
101000 -- (-2005.058) (-2008.366) (-2000.353) [-1991.505] * (-1985.980) [-1992.715] (-1984.561) (-1994.150) -- 0:12:09
102000 -- (-1991.416) (-2003.259) (-1997.563) [-1997.152] * (-2002.652) (-1991.822) [-1988.520] (-1998.285) -- 0:12:01
103000 -- (-1995.165) (-2001.156) (-1998.529) [-1985.559] * (-2010.197) [-1990.224] (-1991.171) (-1998.091) -- 0:12:02
104000 -- (-1993.559) [-2005.328] (-2003.204) (-1991.043) * (-2000.088) (-1994.864) [-1992.163] (-2008.354) -- 0:12:03
105000 -- (-1996.834) [-2008.482] (-2000.593) (-1994.116) * (-1984.561) (-2005.894) (-1993.711) [-1990.995] -- 0:12:04
Average standard deviation of split frequencies: 0.032798
106000 -- [-1984.637] (-2003.893) (-2003.008) (-1999.070) * (-1999.029) (-1988.777) (-1992.825) [-1989.728] -- 0:11:56
107000 -- (-1988.192) [-1985.116] (-1980.477) (-1997.427) * (-1990.070) (-1997.955) (-1990.470) [-1996.679] -- 0:11:57
108000 -- [-1986.513] (-1992.030) (-1985.418) (-2001.798) * [-1991.924] (-1997.153) (-1990.803) (-1989.870) -- 0:11:58
109000 -- [-2002.788] (-1985.676) (-1992.250) (-1998.869) * (-1988.784) (-1997.555) (-2002.678) [-1987.340] -- 0:11:51
110000 -- (-2010.847) [-1990.883] (-1980.733) (-2011.311) * [-1990.418] (-1999.467) (-2006.675) (-1983.940) -- 0:11:52
Average standard deviation of split frequencies: 0.030616
111000 -- (-1991.918) [-1993.289] (-1994.626) (-1998.845) * [-1998.642] (-2000.720) (-1995.582) (-1995.680) -- 0:11:52
112000 -- (-1995.720) [-1995.227] (-2002.778) (-1991.017) * [-1990.037] (-1995.284) (-1998.633) (-2010.345) -- 0:11:45
113000 -- (-1998.054) (-1992.471) (-2002.337) [-1995.949] * (-1992.618) (-1999.066) [-1980.296] (-1998.472) -- 0:11:46
114000 -- (-2002.294) [-1994.111] (-2013.433) (-2003.631) * [-1979.609] (-2004.609) (-1991.270) (-1998.452) -- 0:11:47
115000 -- [-1993.457] (-2011.861) (-1996.896) (-2008.060) * [-1976.053] (-1995.581) (-2003.396) (-2002.288) -- 0:11:40
Average standard deviation of split frequencies: 0.029082
116000 -- (-1992.039) (-2007.143) [-1978.153] (-2002.990) * [-1989.757] (-1993.072) (-2006.507) (-2001.280) -- 0:11:41
117000 -- [-1994.760] (-2002.493) (-1988.397) (-2010.829) * (-1991.646) [-1993.613] (-1992.489) (-2005.898) -- 0:11:41
118000 -- [-1996.475] (-1987.081) (-1984.033) (-2005.966) * (-1994.824) (-1991.372) [-1989.601] (-1994.862) -- 0:11:35
119000 -- (-2015.855) [-1992.838] (-1985.524) (-2005.033) * (-2003.898) (-1982.771) (-1994.925) [-1989.670] -- 0:11:35
120000 -- (-1998.044) (-2005.083) [-1983.209] (-2009.639) * (-1996.123) (-1994.002) [-1991.793] (-1998.982) -- 0:11:36
Average standard deviation of split frequencies: 0.027591
121000 -- (-2008.637) (-1996.835) [-1982.646] (-2001.512) * [-1990.599] (-1988.473) (-2000.866) (-2010.528) -- 0:11:37
122000 -- (-2000.509) (-2012.916) (-2001.821) [-1986.142] * (-2008.782) (-1992.811) (-1998.647) [-2001.538] -- 0:11:30
123000 -- (-1992.044) [-1995.807] (-2008.014) (-2006.651) * (-2011.265) [-1991.707] (-2002.311) (-2002.198) -- 0:11:31
124000 -- (-1991.840) [-1991.909] (-1999.083) (-2004.295) * (-1992.463) (-1997.353) [-1988.741] (-2000.643) -- 0:11:32
125000 -- [-2000.999] (-1992.241) (-1995.657) (-1998.897) * (-1996.758) (-2005.193) [-1981.836] (-1999.944) -- 0:11:26
Average standard deviation of split frequencies: 0.028060
126000 -- (-1990.170) (-1996.539) (-2008.100) [-1994.411] * [-1990.233] (-2001.950) (-1989.649) (-1992.491) -- 0:11:26
127000 -- (-1987.316) (-1988.967) (-1993.972) [-1993.526] * [-1988.343] (-1997.135) (-1997.548) (-2002.628) -- 0:11:27
128000 -- (-1999.846) (-1995.887) [-1987.232] (-2000.970) * (-1983.453) [-1987.287] (-1998.034) (-2007.494) -- 0:11:21
129000 -- (-2005.498) (-1993.146) [-1993.032] (-1993.776) * [-1983.577] (-1997.626) (-1991.467) (-1987.680) -- 0:11:21
130000 -- (-1996.068) [-1987.535] (-1998.752) (-1995.728) * (-1986.456) (-2005.659) (-1987.726) [-1987.671] -- 0:11:22
Average standard deviation of split frequencies: 0.028749
131000 -- (-1995.840) [-1989.187] (-2002.216) (-1995.988) * (-1994.942) (-1991.566) (-1986.755) [-1986.831] -- 0:11:16
132000 -- (-1989.786) (-1997.695) (-2014.964) [-1989.380] * [-1999.543] (-2008.601) (-2002.300) (-1998.153) -- 0:11:17
133000 -- (-1996.599) (-2003.439) [-2000.898] (-2004.375) * (-2001.431) (-1988.523) (-1991.366) [-1985.551] -- 0:11:17
134000 -- [-1994.614] (-1995.994) (-1992.761) (-1996.245) * (-1999.120) (-1998.281) (-2017.539) [-1994.653] -- 0:11:12
135000 -- (-1997.171) (-2014.695) (-1998.040) [-1986.529] * (-1993.549) (-2004.712) (-1993.878) [-1985.033] -- 0:11:12
Average standard deviation of split frequencies: 0.023072
136000 -- (-1999.411) (-2020.148) (-1989.350) [-1986.237] * [-1986.417] (-2004.669) (-1997.803) (-1982.409) -- 0:11:13
137000 -- (-1994.643) (-2012.818) (-1992.144) [-1987.678] * (-1999.983) (-2003.547) [-1988.247] (-1994.744) -- 0:11:07
138000 -- [-1987.519] (-1998.851) (-1984.153) (-2007.989) * (-1996.109) [-1998.219] (-1981.598) (-1988.189) -- 0:11:08
139000 -- [-1986.568] (-2010.058) (-1990.425) (-1999.462) * (-1995.670) (-1997.512) [-1985.274] (-1991.684) -- 0:11:08
140000 -- [-1990.522] (-1997.673) (-1991.729) (-2002.326) * (-2011.600) [-1991.602] (-2000.805) (-2008.606) -- 0:11:09
Average standard deviation of split frequencies: 0.023877
141000 -- (-1986.473) [-1996.200] (-2011.261) (-2011.321) * (-1993.323) (-1994.556) (-2005.767) [-1988.934] -- 0:11:04
142000 -- [-1995.474] (-2000.418) (-1989.259) (-2004.309) * (-2003.538) [-1988.916] (-1978.835) (-1986.746) -- 0:11:04
143000 -- (-1991.045) (-1991.635) [-1986.961] (-2008.688) * (-1998.153) [-1983.482] (-2005.627) (-2001.908) -- 0:11:05
144000 -- (-1991.030) [-1993.586] (-1995.331) (-2011.583) * [-1998.228] (-1999.070) (-2002.114) (-1990.095) -- 0:10:59
145000 -- [-1986.194] (-2005.538) (-2009.930) (-1989.498) * (-2007.635) (-1990.798) [-1994.272] (-2002.933) -- 0:11:00
Average standard deviation of split frequencies: 0.024720
146000 -- [-1979.648] (-1995.689) (-2011.589) (-2009.239) * (-1992.796) (-2004.534) (-2003.742) [-1991.206] -- 0:11:00
147000 -- (-1984.867) [-1981.757] (-2004.384) (-2005.647) * (-2002.866) (-2019.528) [-1990.053] (-1987.877) -- 0:10:55
148000 -- [-1998.030] (-2001.729) (-2002.571) (-2008.880) * [-1995.845] (-2001.150) (-1997.147) (-1998.715) -- 0:10:56
149000 -- [-1990.748] (-1988.266) (-1999.320) (-2010.238) * (-1995.389) (-2010.455) [-1996.248] (-1989.753) -- 0:10:56
150000 -- (-2000.379) (-1987.820) (-2003.086) [-1991.868] * [-2002.540] (-1992.742) (-1988.476) (-2009.082) -- 0:10:51
Average standard deviation of split frequencies: 0.023173
151000 -- (-1994.072) (-2001.676) (-1993.430) [-1987.210] * [-1984.871] (-1989.987) (-1994.286) (-2006.190) -- 0:10:52
152000 -- (-2002.472) (-1984.766) (-2006.192) [-1993.769] * [-1994.410] (-2002.233) (-1989.879) (-2009.386) -- 0:10:52
153000 -- [-1993.993] (-1987.808) (-2008.451) (-1998.774) * (-1994.742) (-2004.360) [-1987.055] (-2005.069) -- 0:10:53
154000 -- (-2000.234) [-1983.598] (-2000.888) (-1998.040) * (-1993.286) (-2007.347) [-1996.675] (-1998.356) -- 0:10:48
155000 -- (-1989.978) [-1987.456] (-2006.248) (-1997.916) * (-1992.895) (-2003.365) [-1992.581] (-1988.372) -- 0:10:48
Average standard deviation of split frequencies: 0.022664
156000 -- (-1997.006) (-1987.032) (-2002.571) [-1993.893] * [-1988.443] (-2002.928) (-1993.813) (-1997.037) -- 0:10:49
157000 -- (-1992.532) (-1995.346) (-2003.887) [-2000.928] * (-1989.672) (-2000.176) (-2004.006) [-1986.163] -- 0:10:44
158000 -- (-2004.391) (-2009.495) (-1998.241) [-1990.757] * (-2001.965) (-1991.787) [-1985.863] (-2003.723) -- 0:10:44
159000 -- (-1986.949) (-1992.371) [-1998.297] (-1992.886) * (-2012.518) [-1992.982] (-2017.178) (-1992.869) -- 0:10:45
160000 -- [-1991.448] (-2002.190) (-1994.933) (-2003.147) * (-1990.099) (-2000.715) [-1990.280] (-1994.721) -- 0:10:45
Average standard deviation of split frequencies: 0.025031
161000 -- (-1985.938) [-1993.173] (-1982.505) (-2000.667) * (-2004.573) [-1999.748] (-1990.976) (-1996.201) -- 0:10:40
162000 -- (-2004.229) (-1991.271) (-2003.392) [-1988.724] * (-2010.947) (-2001.303) (-1989.441) [-1989.168] -- 0:10:41
163000 -- (-1980.390) (-2017.149) [-1993.558] (-1998.220) * (-1996.563) (-1991.738) [-1991.824] (-2001.542) -- 0:10:41
164000 -- (-1995.848) (-1993.327) [-1984.988] (-1989.540) * [-1995.764] (-1997.160) (-1994.673) (-2004.944) -- 0:10:37
165000 -- [-1987.025] (-2002.880) (-1989.946) (-1992.078) * (-2000.895) (-1993.906) (-1998.675) [-1992.310] -- 0:10:37
Average standard deviation of split frequencies: 0.023517
166000 -- (-1999.280) [-1982.922] (-1991.616) (-1989.586) * (-1987.878) (-1993.158) [-1984.703] (-1987.669) -- 0:10:38
167000 -- (-1988.754) [-1997.091] (-1998.372) (-1990.422) * [-2010.847] (-2001.727) (-1995.770) (-2000.171) -- 0:10:33
168000 -- (-2006.374) [-1988.094] (-1991.945) (-1991.998) * (-2016.367) (-2015.864) (-1989.933) [-1982.170] -- 0:10:33
169000 -- [-1994.631] (-2004.570) (-1993.568) (-1990.759) * [-1997.910] (-1998.964) (-1995.546) (-1991.227) -- 0:10:34
170000 -- (-1988.685) (-1990.710) (-1994.230) [-1980.074] * [-1992.684] (-2007.550) (-2000.060) (-2000.107) -- 0:10:34
Average standard deviation of split frequencies: 0.017522
171000 -- [-1993.598] (-1995.365) (-2000.917) (-1992.123) * [-1995.079] (-1995.648) (-1997.980) (-1986.958) -- 0:10:30
172000 -- (-1993.259) (-1991.937) (-2000.686) [-1996.850] * (-1999.271) (-2009.088) [-1985.582] (-1988.180) -- 0:10:30
173000 -- [-1987.950] (-2009.899) (-1991.147) (-1994.031) * [-1979.531] (-1992.987) (-2001.199) (-1986.245) -- 0:10:31
174000 -- [-1988.094] (-1988.541) (-2001.366) (-1999.369) * [-1986.161] (-1996.094) (-2004.655) (-2003.660) -- 0:10:26
175000 -- [-1989.953] (-2001.336) (-1996.591) (-1997.553) * (-1986.590) [-1985.158] (-1998.139) (-1996.086) -- 0:10:27
Average standard deviation of split frequencies: 0.016238
176000 -- (-1991.244) (-1993.977) (-2020.254) [-1986.357] * (-1990.620) (-2000.251) [-1997.722] (-1994.190) -- 0:10:27
177000 -- (-1990.486) (-1996.367) (-1995.641) [-1988.472] * [-1988.953] (-1998.502) (-1996.792) (-2004.196) -- 0:10:27
178000 -- (-1999.403) [-2009.544] (-2003.105) (-1991.958) * [-1994.844] (-1992.197) (-2006.647) (-2013.256) -- 0:10:28
179000 -- (-2007.518) [-1988.007] (-1999.653) (-1991.855) * [-1989.682] (-1999.476) (-2007.860) (-2004.737) -- 0:10:28
180000 -- (-2004.264) (-2006.830) (-1990.724) [-1993.020] * [-1989.171] (-2000.221) (-1995.822) (-1994.004) -- 0:10:33
Average standard deviation of split frequencies: 0.018591
181000 -- (-2006.697) (-2001.874) (-2008.792) [-1983.838] * (-1990.572) (-2000.201) (-1996.382) [-1988.129] -- 0:10:33
182000 -- (-1993.662) [-1988.026] (-2000.565) (-1990.218) * (-1998.853) (-2013.386) (-1983.154) [-1983.785] -- 0:10:33
183000 -- (-1998.111) [-1992.454] (-2001.534) (-1988.745) * (-1974.925) (-2010.952) [-1990.149] (-1996.283) -- 0:10:33
184000 -- (-2000.239) (-1996.620) [-1993.736] (-1988.494) * [-1988.781] (-2013.715) (-1996.758) (-1999.820) -- 0:10:34
185000 -- (-2016.253) (-2002.631) (-1985.145) [-1996.959] * (-1988.285) (-2013.404) [-1986.766] (-1998.250) -- 0:10:34
Average standard deviation of split frequencies: 0.019325
186000 -- (-2006.351) [-1984.165] (-1998.796) (-2013.592) * (-1993.948) (-2002.710) [-1998.015] (-2021.235) -- 0:10:34
187000 -- (-2008.262) (-1988.999) [-1991.000] (-2005.714) * (-1986.966) (-1993.006) [-1995.682] (-2007.368) -- 0:10:34
188000 -- (-1991.214) [-1978.382] (-2001.132) (-1993.978) * (-2002.536) (-1995.868) (-2005.454) [-1992.416] -- 0:10:34
189000 -- (-1983.127) [-2001.497] (-1990.603) (-2003.353) * (-1996.843) [-1996.428] (-2009.069) (-1991.759) -- 0:10:35
190000 -- (-2016.713) [-1990.300] (-2010.813) (-2005.177) * (-2005.118) [-1995.260] (-1996.226) (-1997.743) -- 0:10:35
Average standard deviation of split frequencies: 0.018620
191000 -- (-2006.062) (-1994.370) [-1998.713] (-2006.088) * (-1999.875) [-1995.467] (-2001.583) (-1998.306) -- 0:10:35
192000 -- (-1980.789) [-1997.704] (-2003.170) (-1989.608) * (-2012.558) (-2014.305) [-1989.801] (-1997.958) -- 0:10:35
193000 -- (-1989.118) [-1994.356] (-1994.458) (-1986.858) * (-1984.452) (-2009.714) [-1992.123] (-2009.008) -- 0:10:35
194000 -- (-2002.917) [-2009.276] (-1992.720) (-2004.579) * [-1988.593] (-2005.294) (-1991.384) (-2003.526) -- 0:10:35
195000 -- [-1992.208] (-1996.175) (-1988.212) (-2027.515) * [-1985.747] (-2009.623) (-1984.071) (-2020.646) -- 0:10:39
Average standard deviation of split frequencies: 0.019016
196000 -- (-2010.716) [-1987.371] (-1992.196) (-2002.140) * (-1996.861) (-2009.083) [-1996.121] (-2010.873) -- 0:10:39
197000 -- [-1988.522] (-1999.431) (-1993.602) (-2011.232) * [-1991.986] (-2012.824) (-2000.954) (-1988.943) -- 0:10:39
198000 -- (-1979.772) (-1991.288) [-1993.068] (-1996.372) * [-1993.272] (-2010.971) (-1990.669) (-2003.436) -- 0:10:39
199000 -- [-1993.955] (-1995.059) (-2002.346) (-2018.558) * (-2002.897) (-2003.142) [-1995.410] (-2002.098) -- 0:10:39
200000 -- (-1982.013) [-1992.414] (-2006.319) (-2001.514) * (-1984.122) (-1998.372) [-1998.416] (-1994.904) -- 0:10:40
Average standard deviation of split frequencies: 0.018500
201000 -- (-2003.368) [-1985.988] (-1987.316) (-2003.393) * (-1985.578) (-2012.945) [-1980.513] (-2013.555) -- 0:10:39
202000 -- [-1993.658] (-1997.299) (-1993.463) (-1991.796) * (-1989.784) (-1992.592) [-1988.966] (-2005.891) -- 0:10:39
203000 -- [-1987.952] (-1995.939) (-2017.812) (-2007.950) * (-1985.163) [-1997.490] (-1996.662) (-1996.544) -- 0:10:39
204000 -- (-1994.672) [-1997.490] (-1996.871) (-2012.280) * (-2003.492) (-1993.894) (-2004.558) [-1987.263] -- 0:10:39
205000 -- (-1997.748) (-1986.330) (-1998.104) [-1993.873] * (-2006.125) (-2008.418) (-2012.375) [-1994.517] -- 0:10:39
Average standard deviation of split frequencies: 0.017449
206000 -- (-1994.125) (-1993.660) (-1996.270) [-2001.699] * (-1991.625) (-1988.242) [-1990.874] (-1994.802) -- 0:10:39
207000 -- (-1989.155) [-1989.862] (-1987.274) (-2004.066) * (-1998.170) [-1996.507] (-1992.292) (-2008.161) -- 0:10:39
208000 -- (-2006.489) (-1989.388) (-1987.635) [-1991.838] * [-1994.763] (-2001.925) (-2002.811) (-2000.799) -- 0:10:39
209000 -- (-2002.747) (-1994.175) (-1992.428) [-1990.537] * [-1982.482] (-1993.567) (-1996.776) (-1995.027) -- 0:10:39
210000 -- [-1991.855] (-2011.933) (-2003.192) (-2001.277) * [-1993.803] (-2001.481) (-2004.320) (-1998.766) -- 0:10:39
Average standard deviation of split frequencies: 0.016363
211000 -- (-2004.564) (-1991.505) [-1990.955] (-2002.059) * (-1987.321) (-2008.240) (-2004.698) [-1995.351] -- 0:10:39
212000 -- (-1994.868) (-2004.751) (-2002.332) [-1984.715] * (-2000.702) [-1998.223] (-2001.437) (-2009.216) -- 0:10:39
213000 -- [-1993.934] (-2001.704) (-2000.950) (-1987.983) * (-1990.660) [-1993.082] (-2001.953) (-2002.290) -- 0:10:39
214000 -- (-2001.547) [-1991.236] (-2009.548) (-2002.374) * (-2006.835) (-1989.882) (-2009.574) [-1984.931] -- 0:10:39
215000 -- (-1998.576) [-1991.881] (-1994.389) (-1996.499) * (-1996.657) (-2004.362) (-2001.072) [-1988.346] -- 0:10:42
Average standard deviation of split frequencies: 0.015891
216000 -- (-1992.476) (-1996.639) (-1997.820) [-1999.637] * (-2001.400) [-1990.682] (-2009.642) (-1998.305) -- 0:10:42
217000 -- [-1997.986] (-2006.107) (-1995.528) (-2004.241) * (-1994.129) [-1995.934] (-2008.056) (-1995.984) -- 0:10:42
218000 -- (-2005.480) (-1995.766) [-1996.635] (-2002.029) * (-1988.471) (-2001.969) (-2011.166) [-1993.445] -- 0:10:42
219000 -- (-1993.750) [-1985.444] (-2004.750) (-1994.380) * [-1983.323] (-2003.582) (-2007.467) (-2004.112) -- 0:10:41
220000 -- (-1986.847) (-2008.934) (-2001.239) [-1986.311] * (-1986.971) (-2004.146) (-2003.039) [-1990.341] -- 0:10:41
Average standard deviation of split frequencies: 0.016623
221000 -- [-1988.056] (-1995.905) (-1990.839) (-2000.282) * [-1989.574] (-1991.325) (-2008.437) (-1990.882) -- 0:10:41
222000 -- [-1991.257] (-1991.595) (-2004.321) (-1989.960) * (-1998.579) (-1991.686) (-1999.147) [-1978.398] -- 0:10:41
223000 -- (-1994.154) (-1986.895) [-1985.058] (-2001.030) * (-1990.496) (-1982.647) (-1995.505) [-1989.628] -- 0:10:41
224000 -- (-1991.796) [-1987.928] (-1999.412) (-1985.409) * [-1991.622] (-1985.023) (-2000.073) (-1993.345) -- 0:10:40
225000 -- [-1995.761] (-1999.554) (-2026.109) (-1994.369) * (-1990.674) (-1992.408) [-1982.292] (-1999.100) -- 0:10:40
Average standard deviation of split frequencies: 0.016361
226000 -- [-1993.567] (-1997.808) (-1991.689) (-1996.332) * (-1995.127) (-1994.879) [-1985.627] (-2005.928) -- 0:10:40
227000 -- (-1992.645) (-2007.679) (-1990.587) [-1989.871] * [-1997.525] (-2010.321) (-1995.384) (-1987.104) -- 0:10:40
228000 -- (-1998.106) (-1998.194) (-1997.709) [-1982.685] * (-2009.466) (-1997.362) (-2008.977) [-1984.310] -- 0:10:39
229000 -- [-1992.562] (-1986.236) (-1995.170) (-1998.846) * (-1992.899) (-1987.856) (-2001.204) [-1989.906] -- 0:10:39
230000 -- [-1982.115] (-1983.995) (-1988.303) (-1994.238) * (-1986.540) (-1993.203) (-1989.022) [-1990.337] -- 0:10:39
Average standard deviation of split frequencies: 0.014880
231000 -- (-1995.941) (-2001.303) [-1987.572] (-2000.671) * (-1983.457) (-1990.419) (-1993.236) [-1991.411] -- 0:10:39
232000 -- (-1993.523) [-1986.866] (-1989.426) (-1992.250) * [-1990.873] (-2001.675) (-1996.646) (-2003.664) -- 0:10:38
233000 -- [-1984.313] (-1986.388) (-2002.721) (-1987.955) * [-1993.675] (-1998.799) (-2003.467) (-1992.761) -- 0:10:38
234000 -- [-1985.196] (-1994.955) (-1991.738) (-1990.533) * (-1996.071) (-2006.521) (-2001.903) [-1985.662] -- 0:10:38
235000 -- (-1998.145) [-2000.734] (-1985.834) (-2003.393) * (-1995.926) (-2002.958) [-1989.249] (-1987.686) -- 0:10:41
Average standard deviation of split frequencies: 0.016604
236000 -- [-1986.771] (-1989.435) (-1998.339) (-1985.509) * (-1995.372) (-1989.778) [-2007.105] (-1994.982) -- 0:10:40
237000 -- [-1981.558] (-1993.149) (-2004.750) (-1986.983) * (-1982.232) (-2002.882) [-1993.724] (-1992.178) -- 0:10:40
238000 -- (-1985.712) (-1998.583) (-1996.979) [-1981.154] * (-2007.236) (-2002.210) (-2010.346) [-1984.255] -- 0:10:40
239000 -- [-1985.245] (-2000.465) (-2008.220) (-2007.551) * [-1985.431] (-1997.488) (-1998.648) (-1998.505) -- 0:10:40
240000 -- [-1989.814] (-1999.526) (-1989.889) (-1995.616) * [-1993.476] (-2002.638) (-1994.393) (-1991.812) -- 0:10:39
Average standard deviation of split frequencies: 0.015425
241000 -- (-2002.595) [-1988.253] (-1991.003) (-1986.547) * (-1992.033) (-2002.762) [-1992.784] (-1987.839) -- 0:10:39
242000 -- (-1988.970) [-1987.068] (-1993.329) (-1989.162) * (-2005.063) (-2003.479) (-2006.370) [-1992.202] -- 0:10:38
243000 -- (-1996.066) (-1992.491) [-1984.454] (-2008.929) * [-1986.848] (-2013.964) (-2003.533) (-1991.034) -- 0:10:38
244000 -- (-1998.976) (-1986.323) (-1987.051) [-1993.064] * [-1991.658] (-2007.953) (-1995.720) (-1999.151) -- 0:10:38
245000 -- (-2005.958) (-1999.204) [-1985.145] (-2005.628) * (-1989.655) (-1999.990) (-2004.241) [-1985.800] -- 0:10:37
Average standard deviation of split frequencies: 0.017127
246000 -- (-1993.153) [-1987.777] (-1990.799) (-1989.221) * [-1986.277] (-2003.706) (-2002.565) (-1985.442) -- 0:10:37
247000 -- (-1996.662) (-1996.231) (-2002.439) [-1986.087] * (-2001.772) [-1990.220] (-1996.974) (-1993.297) -- 0:10:37
248000 -- (-1989.146) (-2002.670) (-2006.759) [-1987.742] * [-1994.413] (-1998.032) (-1991.393) (-2011.634) -- 0:10:36
249000 -- (-1990.402) (-2003.286) (-2000.887) [-1992.577] * [-1986.872] (-1997.632) (-2002.550) (-1997.284) -- 0:10:36
250000 -- [-1985.679] (-2002.997) (-2005.696) (-1992.822) * [-1986.125] (-1996.457) (-1988.001) (-2006.176) -- 0:10:36
Average standard deviation of split frequencies: 0.016220
251000 -- [-1980.551] (-1985.751) (-2010.700) (-1997.977) * [-1979.669] (-1999.649) (-1988.571) (-1997.518) -- 0:10:35
252000 -- (-1993.552) [-1991.352] (-2009.587) (-1999.931) * (-1993.516) [-1994.942] (-2006.631) (-1998.234) -- 0:10:35
253000 -- (-2018.002) [-1988.169] (-2006.038) (-2003.551) * (-2008.771) (-1992.299) (-1991.899) [-1998.763] -- 0:10:37
254000 -- (-1990.749) (-1990.084) (-2013.697) [-1992.073] * (-2027.071) (-2009.443) (-1990.984) [-1990.271] -- 0:10:37
255000 -- (-2004.325) [-1994.737] (-2007.821) (-1988.848) * (-2009.627) (-2004.179) (-2009.586) [-1980.040] -- 0:10:36
Average standard deviation of split frequencies: 0.016803
256000 -- (-1998.086) [-1985.730] (-1995.758) (-1994.444) * (-1999.159) [-1999.830] (-1998.521) (-1997.707) -- 0:10:36
257000 -- (-1993.694) [-1990.084] (-1993.266) (-2008.711) * (-1998.838) (-1991.816) [-1981.577] (-1995.469) -- 0:10:36
258000 -- [-1984.420] (-1998.030) (-1986.657) (-2031.311) * (-2001.417) (-1997.844) [-1978.171] (-1994.644) -- 0:10:35
259000 -- [-1999.366] (-2000.128) (-1996.854) (-2021.293) * [-1987.575] (-2001.943) (-2002.339) (-2000.323) -- 0:10:35
260000 -- [-1992.084] (-2015.012) (-2000.447) (-2008.739) * [-2000.773] (-1992.943) (-1999.233) (-2005.320) -- 0:10:34
Average standard deviation of split frequencies: 0.016672
261000 -- [-1981.215] (-2007.732) (-1996.271) (-1995.083) * (-1993.172) (-2007.903) [-1984.813] (-1990.293) -- 0:10:34
262000 -- (-2007.525) (-1992.963) [-1994.479] (-1998.542) * (-2015.083) (-1992.698) [-1987.639] (-1999.995) -- 0:10:33
263000 -- (-1995.124) (-1992.292) (-2005.350) [-2002.141] * (-1998.184) (-1995.541) [-1992.778] (-2003.005) -- 0:10:33
264000 -- (-2006.629) [-1984.262] (-2008.892) (-1985.045) * (-2007.055) (-1998.136) [-1992.999] (-1993.654) -- 0:10:32
265000 -- (-2000.851) [-1992.153] (-1996.172) (-1995.021) * (-2017.385) (-2007.992) (-1989.346) [-1988.549] -- 0:10:32
Average standard deviation of split frequencies: 0.015950
266000 -- [-1985.257] (-2002.042) (-1993.720) (-1984.355) * (-1992.439) (-2007.393) (-1984.598) [-1987.984] -- 0:10:29
267000 -- [-1978.245] (-2003.342) (-1998.395) (-1986.786) * (-1998.278) (-2003.410) (-1997.958) [-1993.826] -- 0:10:28
268000 -- (-1990.328) (-1981.015) (-2000.068) [-1987.330] * (-2004.257) (-2000.639) (-1991.164) [-1984.641] -- 0:10:28
269000 -- [-1991.134] (-1986.364) (-1998.454) (-2002.875) * [-1994.200] (-2001.420) (-2002.863) (-1999.448) -- 0:10:25
270000 -- (-1992.036) (-2003.815) (-1993.933) [-1987.456] * [-1990.439] (-2012.135) (-1994.524) (-1988.189) -- 0:10:24
Average standard deviation of split frequencies: 0.016165
271000 -- [-1983.877] (-1998.358) (-1993.277) (-1993.424) * [-1986.029] (-2011.063) (-2011.467) (-1997.907) -- 0:10:24
272000 -- (-1986.503) (-1999.105) (-2001.092) [-1989.496] * [-1983.844] (-1993.720) (-1998.194) (-1986.716) -- 0:10:23
273000 -- (-1977.305) [-1988.120] (-1985.312) (-2004.287) * (-1999.525) (-1994.575) [-1992.183] (-1988.391) -- 0:10:20
274000 -- (-2002.548) (-1988.825) (-1995.447) [-1998.487] * [-1994.623] (-2003.861) (-2005.343) (-1983.705) -- 0:10:20
275000 -- (-1991.535) (-1996.521) (-1992.412) [-1995.155] * (-1994.207) (-1995.044) [-1991.831] (-1992.137) -- 0:10:19
Average standard deviation of split frequencies: 0.013397
276000 -- (-2004.352) (-2000.449) (-1989.102) [-1986.019] * (-1997.484) [-1990.885] (-2008.168) (-1988.596) -- 0:10:16
277000 -- (-1999.130) (-2008.852) (-2002.085) [-1987.924] * (-1997.402) (-2002.505) [-1994.881] (-2004.079) -- 0:10:15
278000 -- [-2003.191] (-2008.100) (-2016.028) (-1991.654) * (-1989.516) [-1993.662] (-1997.558) (-1998.063) -- 0:10:15
279000 -- (-1997.087) (-1994.452) [-1994.539] (-2004.332) * (-1994.173) (-2004.524) (-1994.265) [-1985.247] -- 0:10:15
280000 -- (-1986.729) (-1994.529) [-1997.703] (-2015.660) * [-1992.036] (-1996.099) (-2008.071) (-1995.724) -- 0:10:14
Average standard deviation of split frequencies: 0.012702
281000 -- [-1995.722] (-1999.280) (-1994.572) (-2006.064) * (-1997.686) (-2004.715) (-1997.583) [-1988.635] -- 0:10:14
282000 -- [-1979.510] (-2001.439) (-1994.316) (-1989.260) * (-2011.271) (-2003.551) [-1988.318] (-1988.519) -- 0:10:13
283000 -- (-1995.343) [-1994.381] (-1999.631) (-2000.996) * (-2007.675) (-1985.894) [-1990.350] (-1995.881) -- 0:10:13
284000 -- (-2001.751) (-1993.738) (-1998.745) [-1992.676] * (-1993.850) (-1983.493) [-1981.716] (-2000.959) -- 0:10:12
285000 -- (-1995.585) [-1982.756] (-2001.968) (-2006.938) * [-1991.804] (-1997.597) (-2004.189) (-1996.146) -- 0:10:12
Average standard deviation of split frequencies: 0.012156
286000 -- (-2012.452) (-1990.701) (-1998.465) [-1981.725] * [-1996.015] (-1995.299) (-1995.612) (-2010.461) -- 0:10:11
287000 -- (-2003.080) [-1994.301] (-1993.083) (-1997.096) * (-1997.910) (-1993.777) [-1995.459] (-2013.280) -- 0:10:11
288000 -- (-2002.874) (-1996.126) [-1985.804] (-1997.735) * (-1997.738) (-1989.617) (-1996.253) [-1995.031] -- 0:10:13
289000 -- (-2007.713) (-1991.981) (-1997.010) [-2002.008] * (-2004.009) (-1990.347) (-2001.434) [-1992.046] -- 0:10:12
290000 -- [-1980.873] (-2014.199) (-1984.987) (-1993.005) * (-1999.508) [-1993.607] (-2007.029) (-2015.665) -- 0:10:12
Average standard deviation of split frequencies: 0.012721
291000 -- [-1977.023] (-2018.892) (-1991.449) (-2000.767) * [-1991.283] (-1990.272) (-2015.331) (-2009.000) -- 0:10:11
292000 -- (-1982.767) (-2009.083) [-1995.040] (-1994.498) * (-1991.250) (-2005.534) [-1994.620] (-1993.103) -- 0:10:11
293000 -- [-1981.560] (-2005.680) (-1992.929) (-1995.000) * (-1997.583) [-1997.648] (-1998.612) (-1991.087) -- 0:10:10
294000 -- (-1978.783) [-1991.744] (-1998.717) (-1994.156) * (-1995.572) (-1996.095) (-1993.808) [-2003.114] -- 0:10:09
295000 -- [-1983.831] (-2000.933) (-2001.923) (-1985.748) * (-1988.504) [-1987.637] (-2003.036) (-2008.598) -- 0:10:09
Average standard deviation of split frequencies: 0.011895
296000 -- (-1991.259) (-2007.139) [-2006.043] (-1993.862) * (-2000.329) (-1998.964) (-2010.413) [-1986.227] -- 0:10:08
297000 -- (-1995.523) [-1995.626] (-2008.612) (-2007.528) * (-1985.775) (-2009.573) (-2012.143) [-1982.642] -- 0:10:10
298000 -- (-2000.062) (-2004.605) (-2000.532) [-1993.333] * (-1991.770) (-1993.288) (-2010.544) [-1984.172] -- 0:10:10
299000 -- (-1999.392) (-2007.467) [-2008.000] (-1996.456) * (-1996.864) (-1997.214) (-2006.914) [-1991.558] -- 0:10:09
300000 -- [-1993.402] (-1986.278) (-2005.961) (-2000.519) * [-1987.603] (-1996.925) (-1996.255) (-2002.763) -- 0:10:09
Average standard deviation of split frequencies: 0.011563
301000 -- (-1994.042) (-1989.414) (-1997.346) [-2003.205] * (-1998.908) (-1993.154) (-1985.639) [-1991.197] -- 0:10:08
302000 -- [-1988.920] (-1998.071) (-1998.630) (-1999.088) * (-2005.061) (-1994.458) (-2008.728) [-1988.381] -- 0:10:07
303000 -- (-2002.123) (-1985.936) [-1990.678] (-2009.290) * [-2001.030] (-1992.824) (-1991.670) (-2004.978) -- 0:10:07
304000 -- [-1993.032] (-1989.030) (-1983.700) (-1996.147) * (-1992.566) [-1986.452] (-2002.122) (-2009.784) -- 0:10:06
305000 -- (-2001.493) [-1989.671] (-1991.176) (-2002.671) * (-2012.366) [-1985.665] (-2009.154) (-2009.626) -- 0:10:06
Average standard deviation of split frequencies: 0.012902
306000 -- (-1997.415) [-1984.825] (-1993.248) (-2007.520) * [-1997.885] (-1991.372) (-1995.235) (-1996.235) -- 0:10:05
307000 -- [-1988.391] (-2009.147) (-1997.919) (-1994.818) * (-1990.817) (-1993.814) (-2003.963) [-1987.040] -- 0:10:07
308000 -- (-2004.586) [-1987.576] (-2008.308) (-2000.193) * [-1987.559] (-1993.599) (-1990.528) (-2000.566) -- 0:10:06
309000 -- [-1983.624] (-2013.563) (-1996.848) (-1988.997) * [-1996.638] (-2005.206) (-1990.317) (-2000.367) -- 0:10:06
310000 -- (-1994.734) [-1997.308] (-2008.212) (-1992.703) * (-1992.181) (-2011.459) (-1989.431) [-1988.159] -- 0:10:05
Average standard deviation of split frequencies: 0.013372
311000 -- (-2003.507) (-2003.453) (-1994.868) [-1980.771] * (-1992.087) (-2016.868) (-1996.745) [-1990.982] -- 0:10:04
312000 -- (-1991.238) (-1999.795) [-1998.097] (-1986.752) * [-1984.504] (-2006.353) (-1993.771) (-2002.859) -- 0:10:04
313000 -- (-2000.365) [-1990.085] (-1998.885) (-2008.990) * [-1985.989] (-1987.191) (-2009.891) (-2012.970) -- 0:10:03
314000 -- [-1981.235] (-2000.072) (-1989.269) (-1993.820) * [-1984.732] (-2002.533) (-2003.742) (-1990.490) -- 0:10:02
315000 -- [-1991.696] (-1991.113) (-1999.309) (-2024.267) * (-1986.110) (-2012.560) (-2003.534) [-1989.745] -- 0:10:02
Average standard deviation of split frequencies: 0.013240
316000 -- (-2003.640) (-1998.693) [-2003.638] (-2015.933) * (-1983.870) (-2008.656) [-1997.932] (-2006.489) -- 0:10:01
317000 -- [-1992.001] (-1993.367) (-1989.833) (-2018.237) * [-1985.745] (-2003.781) (-1995.258) (-1994.553) -- 0:10:01
318000 -- (-1998.097) [-1986.775] (-2000.303) (-2007.288) * (-1985.662) (-2000.746) [-1983.768] (-2019.100) -- 0:10:02
319000 -- (-2005.100) (-2014.048) (-2010.621) [-1994.945] * [-1984.768] (-1991.030) (-1993.737) (-2013.348) -- 0:10:02
320000 -- (-1995.919) (-2000.625) (-2006.202) [-1993.855] * [-2001.391] (-2001.947) (-1993.389) (-2019.386) -- 0:10:01
Average standard deviation of split frequencies: 0.012771
321000 -- (-2003.318) [-1996.585] (-2001.822) (-1993.179) * (-1994.920) [-1990.603] (-1981.485) (-1996.887) -- 0:10:00
322000 -- (-2008.840) (-1991.268) (-1998.880) [-1987.063] * [-1994.930] (-1995.686) (-2005.957) (-1985.728) -- 0:10:00
323000 -- (-1994.762) [-1984.108] (-2001.509) (-1988.709) * (-2003.754) [-1981.389] (-1997.184) (-1997.536) -- 0:09:59
324000 -- (-1997.205) (-2002.887) (-2008.367) [-1975.268] * (-1986.240) [-1986.643] (-1995.698) (-2007.308) -- 0:09:58
325000 -- (-1991.876) (-1995.451) (-1996.715) [-1983.785] * (-2000.060) (-1983.019) [-1988.760] (-2006.788) -- 0:09:58
Average standard deviation of split frequencies: 0.012291
326000 -- [-1987.080] (-1998.684) (-1996.062) (-2014.007) * [-1989.180] (-1988.040) (-1982.152) (-2004.856) -- 0:09:57
327000 -- (-2005.240) (-2007.085) (-1992.752) [-1987.848] * [-1986.656] (-1992.472) (-2006.258) (-1984.463) -- 0:09:56
328000 -- (-2004.327) (-2009.077) (-2001.887) [-1983.685] * [-1994.114] (-1984.780) (-1998.467) (-2005.999) -- 0:09:56
329000 -- (-1996.385) [-1985.632] (-1985.826) (-2017.904) * (-1990.389) [-1981.370] (-2009.347) (-1994.505) -- 0:09:55
330000 -- (-2005.230) [-1989.377] (-1992.026) (-1999.972) * (-1992.157) (-1987.045) [-1988.737] (-2003.491) -- 0:09:56
Average standard deviation of split frequencies: 0.012385
331000 -- [-1983.001] (-1988.337) (-2002.339) (-1986.570) * (-1997.398) (-1989.334) [-1989.356] (-2021.991) -- 0:09:56
332000 -- [-1998.662] (-1997.066) (-1993.142) (-1995.745) * [-1987.737] (-1996.731) (-1996.232) (-2007.152) -- 0:09:55
333000 -- (-2013.665) (-2006.532) (-1994.896) [-1998.676] * (-2004.793) (-1997.143) (-1984.927) [-1984.470] -- 0:09:54
334000 -- (-1998.740) (-2014.216) [-1982.103] (-2002.659) * (-2008.765) (-1996.676) (-2003.656) [-1994.678] -- 0:09:54
335000 -- (-1997.112) (-2010.025) (-1994.185) [-1990.897] * (-2004.278) [-1986.678] (-2001.452) (-1994.679) -- 0:09:53
Average standard deviation of split frequencies: 0.012671
336000 -- [-1985.052] (-2007.902) (-2002.472) (-1985.308) * (-1988.658) (-1992.926) [-1996.833] (-1992.032) -- 0:09:52
337000 -- [-1980.103] (-2002.199) (-1994.517) (-1997.033) * (-1985.618) [-1990.867] (-2001.299) (-2005.082) -- 0:09:52
338000 -- (-2001.983) [-1977.484] (-1992.097) (-1987.981) * (-2003.879) [-1993.174] (-1998.684) (-1992.891) -- 0:09:51
339000 -- (-2000.126) [-1985.157] (-2005.705) (-1982.528) * (-1987.778) [-1987.842] (-1997.568) (-1992.931) -- 0:09:48
340000 -- (-2001.298) (-1994.184) (-2007.000) [-1989.209] * (-1983.565) (-2004.638) [-1997.439] (-2009.370) -- 0:09:48
Average standard deviation of split frequencies: 0.013103
341000 -- (-1996.889) (-2007.332) (-1997.669) [-1974.903] * [-1986.599] (-2003.533) (-1997.205) (-1996.325) -- 0:09:47
342000 -- (-1999.651) (-1998.867) (-2019.322) [-1987.777] * (-2005.579) [-1993.054] (-1989.368) (-1989.442) -- 0:09:46
343000 -- (-2002.088) [-1982.262] (-1994.547) (-1992.198) * (-2012.091) [-2000.960] (-1986.734) (-1997.586) -- 0:09:44
344000 -- (-1990.793) (-1995.710) (-1998.441) [-1989.028] * (-2007.604) (-1994.004) (-1987.744) [-1983.207] -- 0:09:43
345000 -- (-1986.017) [-1996.697] (-2000.737) (-1999.017) * (-2009.218) (-1998.242) [-1987.667] (-2005.048) -- 0:09:42
Average standard deviation of split frequencies: 0.013156
346000 -- (-2003.976) [-1985.528] (-2006.938) (-2008.742) * (-2000.958) (-1985.748) [-1987.191] (-2002.719) -- 0:09:40
347000 -- (-2014.782) [-1984.548] (-1996.412) (-2002.622) * (-1995.813) (-2000.718) (-1984.098) [-1985.832] -- 0:09:39
348000 -- (-2004.309) (-1989.840) (-2008.548) [-1996.515] * (-2009.093) [-1992.133] (-1990.473) (-1989.069) -- 0:09:38
349000 -- (-1991.704) [-1990.272] (-2017.534) (-1990.232) * [-1988.276] (-1996.000) (-2007.039) (-1995.308) -- 0:09:36
350000 -- (-1993.927) [-1992.299] (-1992.363) (-1991.194) * (-2002.042) [-1991.607] (-1993.945) (-1985.430) -- 0:09:35
Average standard deviation of split frequencies: 0.013695
351000 -- (-2005.503) [-1989.000] (-1996.545) (-1996.845) * (-1995.826) (-1998.671) [-1978.856] (-2004.606) -- 0:09:35
352000 -- (-1996.240) [-1989.205] (-2000.541) (-1989.622) * (-2014.229) (-2014.656) [-1996.995] (-1994.382) -- 0:09:34
353000 -- (-1991.778) [-1985.275] (-2003.292) (-1991.124) * (-2005.422) (-1993.146) (-1986.902) [-1985.832] -- 0:09:31
354000 -- [-1998.243] (-1987.565) (-2002.846) (-1997.512) * (-1998.857) (-1989.942) [-1987.340] (-1988.816) -- 0:09:31
355000 -- [-1987.626] (-2001.862) (-2002.634) (-2003.456) * (-1990.857) [-1991.425] (-1996.949) (-1995.154) -- 0:09:30
Average standard deviation of split frequencies: 0.014111
356000 -- [-1997.427] (-1996.555) (-2001.088) (-2012.434) * (-1990.981) [-1999.335] (-1984.302) (-1990.282) -- 0:09:28
357000 -- (-1987.035) [-1988.916] (-1984.091) (-2003.801) * (-2007.519) [-1994.798] (-1999.421) (-1987.384) -- 0:09:27
358000 -- [-1986.020] (-2005.049) (-1996.292) (-2018.706) * (-2026.998) [-1990.281] (-1997.105) (-1988.873) -- 0:09:26
359000 -- (-1993.722) [-1989.490] (-2007.470) (-2010.768) * (-2004.101) [-1994.728] (-2014.169) (-1993.247) -- 0:09:26
360000 -- (-1989.648) (-1977.833) (-1998.048) [-2000.083] * (-1993.834) (-1992.355) [-1995.483] (-2000.041) -- 0:09:23
Average standard deviation of split frequencies: 0.013765
361000 -- (-2002.836) [-1990.269] (-2006.829) (-1988.613) * [-1985.551] (-1987.591) (-1998.349) (-1986.611) -- 0:09:22
362000 -- [-1986.813] (-1997.079) (-2028.137) (-2001.008) * (-1999.544) [-1985.822] (-1998.298) (-1988.018) -- 0:09:22
363000 -- (-1991.983) [-1996.859] (-2003.003) (-2006.683) * [-1990.334] (-2000.146) (-1999.705) (-2008.675) -- 0:09:19
364000 -- (-1994.766) (-1988.821) (-1995.295) [-1989.486] * [-1987.578] (-1995.955) (-2005.356) (-1989.226) -- 0:09:19
365000 -- (-2005.269) (-1989.418) [-1990.794] (-2003.296) * (-1997.251) (-1991.969) [-1997.405] (-1999.691) -- 0:09:18
Average standard deviation of split frequencies: 0.015375
366000 -- (-1987.951) [-1997.055] (-1993.783) (-2007.273) * (-2002.626) [-1991.040] (-2006.679) (-1996.645) -- 0:09:17
367000 -- (-1998.846) [-1989.354] (-1989.782) (-1996.317) * (-2010.549) [-1984.872] (-1985.388) (-1998.506) -- 0:09:15
368000 -- (-2007.970) (-1994.799) (-2000.263) [-1990.636] * (-1996.891) (-1991.344) [-1987.611] (-1997.028) -- 0:09:14
369000 -- (-2004.404) [-1986.705] (-2007.158) (-1986.228) * [-1984.788] (-1989.289) (-1983.198) (-1991.118) -- 0:09:14
370000 -- [-1994.524] (-2002.071) (-1995.373) (-1990.491) * (-1994.897) (-1994.440) [-1990.313] (-1987.913) -- 0:09:11
Average standard deviation of split frequencies: 0.016136
371000 -- [-1987.832] (-1999.686) (-1998.688) (-1999.028) * [-1986.983] (-2007.706) (-1997.065) (-1988.417) -- 0:09:11
372000 -- (-1995.434) (-1998.204) (-2017.859) [-1988.989] * (-1996.073) (-1987.732) [-1994.912] (-2017.510) -- 0:09:10
373000 -- [-1993.384] (-1999.833) (-2003.392) (-1986.654) * (-1984.629) [-1994.546] (-2000.180) (-2024.420) -- 0:09:07
374000 -- (-1995.360) (-1993.551) (-1997.454) [-1995.218] * [-1992.624] (-1987.355) (-2007.026) (-1989.304) -- 0:09:07
375000 -- [-1997.357] (-2006.890) (-1993.773) (-1993.477) * (-1992.933) (-1997.371) (-2002.698) [-1982.477] -- 0:09:06
Average standard deviation of split frequencies: 0.016338
376000 -- (-1999.719) (-1988.294) (-2003.007) [-1990.908] * (-2007.141) [-1990.513] (-1985.150) (-1994.007) -- 0:09:06
377000 -- (-2000.392) [-1994.295] (-1991.568) (-1997.953) * (-1990.648) (-2015.044) (-2008.220) [-1991.871] -- 0:09:05
378000 -- (-2006.638) (-2007.131) [-1995.416] (-2011.542) * (-1991.249) (-1989.207) (-2006.665) [-1992.257] -- 0:09:04
379000 -- (-2006.011) (-2001.443) [-1981.294] (-2006.846) * (-1982.159) [-1991.840] (-2013.656) (-1997.997) -- 0:09:03
380000 -- (-1997.612) [-1989.639] (-1988.484) (-2018.254) * [-1994.815] (-1982.950) (-2001.229) (-1996.243) -- 0:09:03
Average standard deviation of split frequencies: 0.017918
381000 -- (-2000.651) (-1991.305) [-1991.461] (-2002.227) * (-2005.711) [-1997.955] (-1994.936) (-1997.167) -- 0:09:02
382000 -- (-2001.798) (-1998.105) [-1981.422] (-2000.074) * (-1997.112) [-1992.444] (-1996.073) (-2001.897) -- 0:09:01
383000 -- [-1984.812] (-1999.757) (-1988.708) (-2006.905) * [-1981.831] (-1984.651) (-1992.508) (-1996.490) -- 0:09:02
384000 -- [-1990.359] (-1992.745) (-2001.801) (-2012.813) * [-1989.139] (-1992.504) (-1996.192) (-2006.204) -- 0:09:02
385000 -- [-1984.255] (-1993.325) (-1999.810) (-2007.342) * [-1984.065] (-1995.536) (-1990.571) (-1995.221) -- 0:09:01
Average standard deviation of split frequencies: 0.017975
386000 -- (-1994.545) [-1988.139] (-1998.080) (-2010.645) * (-1999.793) (-2011.709) [-1991.283] (-1987.549) -- 0:09:00
387000 -- [-1993.271] (-1994.071) (-1996.482) (-1989.798) * (-2005.939) (-2001.260) [-1985.519] (-1995.296) -- 0:09:00
388000 -- (-2001.135) [-1987.301] (-1985.471) (-1996.499) * (-1995.239) [-1989.075] (-1985.580) (-2001.201) -- 0:08:59
389000 -- (-2001.938) [-1996.634] (-2001.117) (-1995.568) * (-2011.312) (-1988.688) (-1991.831) [-1996.233] -- 0:08:58
390000 -- [-1990.451] (-1999.248) (-2011.041) (-2007.395) * (-1995.098) (-1996.507) [-1985.273] (-1992.037) -- 0:08:58
Average standard deviation of split frequencies: 0.016705
391000 -- [-1996.182] (-1990.777) (-2000.602) (-1993.103) * (-1997.840) (-1993.881) (-1990.688) [-1989.637] -- 0:08:57
392000 -- (-1994.637) (-1986.382) [-1986.769] (-2001.804) * (-1980.703) (-1991.838) (-1997.797) [-1996.331] -- 0:08:56
393000 -- (-1991.527) (-2003.662) [-1981.756] (-1995.854) * (-1996.793) [-1988.600] (-2000.310) (-1995.333) -- 0:08:55
394000 -- (-2013.384) [-1995.871] (-2005.198) (-1998.988) * (-1988.849) (-1998.430) [-1991.711] (-1999.571) -- 0:08:55
395000 -- [-1996.866] (-1994.217) (-2005.885) (-1998.388) * [-1996.071] (-2002.739) (-1998.961) (-2010.050) -- 0:08:54
Average standard deviation of split frequencies: 0.017261
396000 -- [-1987.424] (-2009.678) (-1990.312) (-1987.472) * (-1986.250) (-2008.573) (-1999.631) [-1994.903] -- 0:08:55
397000 -- (-1995.633) (-1995.860) (-1987.804) [-1981.942] * (-1984.657) [-2007.097] (-2000.785) (-1993.031) -- 0:08:54
398000 -- (-1982.341) [-1993.731] (-1991.710) (-1997.608) * [-2000.224] (-1998.497) (-1999.018) (-1995.920) -- 0:08:53
399000 -- [-1983.392] (-1996.587) (-2001.929) (-1996.430) * (-1991.355) (-1992.027) [-1986.285] (-2000.847) -- 0:08:53
400000 -- [-1975.779] (-1992.766) (-2001.922) (-1990.230) * (-1986.682) (-1991.960) [-1990.157] (-1987.301) -- 0:08:52
Average standard deviation of split frequencies: 0.017023
401000 -- [-1989.713] (-1999.058) (-1996.246) (-1986.060) * (-1992.950) (-1989.276) (-2003.101) [-1988.943] -- 0:08:51
402000 -- (-2007.821) (-2001.517) (-1992.633) [-1982.019] * [-1990.325] (-1992.502) (-1995.826) (-1983.015) -- 0:08:49
403000 -- (-1998.931) (-2000.894) (-2003.073) [-1986.483] * (-1985.136) (-2016.487) (-2004.629) [-1990.570] -- 0:08:48
404000 -- (-1992.822) (-2006.057) [-1992.821] (-1996.714) * [-1976.329] (-2003.580) (-2004.165) (-1995.753) -- 0:08:48
405000 -- [-1988.687] (-2005.768) (-2003.544) (-1997.506) * [-1992.915] (-1990.163) (-2014.536) (-1982.617) -- 0:08:47
Average standard deviation of split frequencies: 0.018142
406000 -- (-1990.875) (-1995.918) (-1998.181) [-1994.151] * [-1992.367] (-2000.979) (-1997.589) (-2009.118) -- 0:08:48
407000 -- (-1997.281) (-2000.970) [-1987.277] (-1993.073) * (-1988.098) (-2006.269) (-2006.074) [-1991.741] -- 0:08:47
408000 -- (-2002.950) (-2000.356) [-1990.306] (-2006.481) * [-1983.607] (-2002.066) (-2002.384) (-1984.454) -- 0:08:46
409000 -- [-1986.943] (-2001.768) (-2005.418) (-2010.820) * [-1988.471] (-2000.570) (-1987.898) (-2006.103) -- 0:08:45
410000 -- (-1989.518) (-1998.398) [-1980.179] (-2007.382) * (-1998.269) (-1999.924) [-1989.818] (-2004.813) -- 0:08:45
Average standard deviation of split frequencies: 0.018295
411000 -- (-1991.049) (-1993.161) [-1986.228] (-1986.881) * (-2002.590) (-1992.548) [-1986.901] (-1997.280) -- 0:08:44
412000 -- (-1992.032) (-2007.152) [-1988.680] (-1989.483) * (-2013.890) (-1996.439) (-1977.203) [-1999.572] -- 0:08:43
413000 -- (-1996.185) [-1991.147] (-2016.553) (-1987.600) * (-2013.110) (-1987.256) [-1993.537] (-2006.135) -- 0:08:43
414000 -- (-2000.971) (-1994.764) (-2003.884) [-1991.047] * [-1990.181] (-1994.080) (-2010.732) (-2012.033) -- 0:08:42
415000 -- (-1997.104) (-1998.676) (-1990.040) [-1992.868] * [-1985.584] (-1985.662) (-1987.485) (-2004.886) -- 0:08:41
Average standard deviation of split frequencies: 0.020079
416000 -- [-1995.943] (-1998.086) (-1993.265) (-1993.216) * [-1993.076] (-1999.865) (-2009.799) (-1989.115) -- 0:08:42
417000 -- [-1992.092] (-2001.933) (-1999.822) (-1995.089) * (-1991.710) [-1987.500] (-1995.748) (-2001.134) -- 0:08:41
418000 -- (-2004.252) (-2011.415) (-1987.048) [-1991.661] * (-1980.088) (-1993.808) (-1998.161) [-1993.171] -- 0:08:40
419000 -- (-1996.534) [-1986.342] (-2001.291) (-2003.162) * [-1984.467] (-2006.350) (-1985.942) (-1994.305) -- 0:08:39
420000 -- (-1988.568) [-1986.079] (-1998.573) (-1986.478) * (-2004.796) (-1987.691) (-1994.115) [-1982.738] -- 0:08:39
Average standard deviation of split frequencies: 0.020661
421000 -- (-1995.077) (-1990.066) (-2003.894) [-1990.696] * [-1984.955] (-1992.510) (-1996.022) (-1991.823) -- 0:08:38
422000 -- (-2005.599) (-1987.929) (-1999.682) [-1992.812] * [-1985.366] (-2001.290) (-2003.847) (-2000.030) -- 0:08:37
423000 -- (-1999.673) [-1987.762] (-1992.666) (-2007.578) * (-1991.882) (-2005.293) (-2006.905) [-1990.972] -- 0:08:36
424000 -- (-1993.993) (-2005.766) (-1987.565) [-1981.465] * (-1995.905) [-2007.695] (-1998.168) (-1998.294) -- 0:08:36
425000 -- (-2007.132) (-2002.776) (-1985.468) [-1987.710] * (-1993.667) [-1986.603] (-1991.243) (-2001.702) -- 0:08:35
Average standard deviation of split frequencies: 0.021302
426000 -- (-1988.069) (-2015.946) (-2000.567) [-1990.596] * (-2019.402) [-2002.260] (-1995.535) (-1988.163) -- 0:08:36
427000 -- (-1996.735) [-1990.007] (-1999.967) (-2001.581) * (-1998.451) [-1991.353] (-1996.960) (-1990.417) -- 0:08:35
428000 -- (-2000.897) [-1990.853] (-1993.101) (-2007.635) * (-2005.759) [-1991.866] (-1995.356) (-2000.135) -- 0:08:34
429000 -- (-2002.454) [-1989.565] (-1985.326) (-2008.982) * (-2002.227) (-2003.447) [-1985.567] (-1991.014) -- 0:08:33
430000 -- (-1989.520) (-1999.495) (-1992.954) [-1989.402] * (-1992.588) (-1993.893) [-1988.579] (-1994.016) -- 0:08:33
Average standard deviation of split frequencies: 0.021002
431000 -- (-1999.765) [-1990.570] (-2011.957) (-1995.947) * (-2000.899) [-1989.985] (-1985.288) (-2004.388) -- 0:08:32
432000 -- (-1997.552) [-1981.407] (-1996.507) (-2004.467) * (-1985.967) [-1985.812] (-1993.231) (-1991.490) -- 0:08:31
433000 -- (-1992.389) (-1998.399) [-1980.678] (-2004.398) * (-1983.002) [-1991.934] (-2001.769) (-1993.120) -- 0:08:30
434000 -- (-1989.494) [-1986.948] (-2003.884) (-1999.042) * (-2009.672) [-1986.855] (-1999.339) (-1993.140) -- 0:08:29
435000 -- (-1984.898) [-1977.852] (-1990.149) (-1986.246) * (-1994.592) (-1995.474) (-2003.763) [-1987.706] -- 0:08:29
Average standard deviation of split frequencies: 0.020644
436000 -- [-1989.217] (-1995.229) (-2010.510) (-2008.681) * (-1998.230) (-2005.567) (-2008.458) [-1988.919] -- 0:08:29
437000 -- (-2011.707) (-1985.540) (-2008.659) [-1996.700] * [-2000.534] (-1990.960) (-2006.477) (-1991.834) -- 0:08:28
438000 -- (-2011.146) [-1985.964] (-2002.211) (-1986.270) * (-1988.671) (-1994.837) [-1997.091] (-1985.787) -- 0:08:28
439000 -- (-1997.827) (-1995.454) (-1992.982) [-1990.598] * (-1993.697) (-2002.165) (-1992.432) [-1985.073] -- 0:08:27
440000 -- (-1993.884) [-1996.498] (-1998.950) (-2000.938) * (-1996.202) [-1990.567] (-1993.605) (-1995.018) -- 0:08:26
Average standard deviation of split frequencies: 0.019891
441000 -- (-2004.115) [-2004.969] (-2003.741) (-1996.121) * (-2010.727) (-2001.895) (-1997.357) [-1983.948] -- 0:08:25
442000 -- [-2002.519] (-1994.876) (-2001.027) (-2013.221) * [-1984.945] (-1990.510) (-1985.187) (-1984.211) -- 0:08:24
443000 -- [-1987.578] (-1994.761) (-2014.929) (-2006.069) * (-2000.426) [-1995.273] (-1993.421) (-1992.560) -- 0:08:24
444000 -- [-1992.418] (-1998.059) (-1993.890) (-1987.182) * [-1989.817] (-1994.658) (-1992.887) (-1994.182) -- 0:08:22
445000 -- [-2001.017] (-1995.226) (-1995.749) (-1981.864) * (-1996.826) [-1991.565] (-2007.236) (-1993.065) -- 0:08:21
Average standard deviation of split frequencies: 0.020049
446000 -- (-1995.585) (-2001.494) (-2002.449) [-1986.113] * (-1999.987) [-1992.107] (-2002.033) (-1993.187) -- 0:08:20
447000 -- (-2009.480) (-2005.811) (-1989.811) [-1993.233] * (-2003.034) [-1990.165] (-2014.935) (-2002.171) -- 0:08:19
448000 -- (-2011.412) (-1994.471) [-1982.063] (-1992.927) * (-2014.891) [-1988.788] (-1993.643) (-1984.681) -- 0:08:17
449000 -- (-1990.423) [-1981.679] (-1991.430) (-2003.575) * (-2004.515) [-1994.847] (-1996.135) (-1990.786) -- 0:08:17
450000 -- [-1990.264] (-2007.142) (-2013.763) (-1997.556) * (-2002.580) (-1999.551) (-1994.466) [-1978.460] -- 0:08:16
Average standard deviation of split frequencies: 0.019972
451000 -- (-2002.187) (-1998.887) (-2018.700) [-1986.786] * (-1997.252) (-2002.129) (-2000.973) [-1999.200] -- 0:08:14
452000 -- (-1991.612) (-1994.823) (-2017.295) [-1978.365] * (-2003.536) [-1992.841] (-2018.318) (-1982.910) -- 0:08:13
453000 -- [-1984.718] (-2000.384) (-1999.103) (-1995.154) * (-2001.288) (-1992.348) (-2015.582) [-1985.553] -- 0:08:12
454000 -- [-1985.182] (-2004.969) (-2000.956) (-1987.217) * (-1995.009) (-1993.414) (-2007.772) [-1991.930] -- 0:08:10
455000 -- (-1987.319) (-1994.704) [-1998.161] (-2002.624) * (-1998.746) [-1999.267] (-2002.324) (-1996.867) -- 0:08:09
Average standard deviation of split frequencies: 0.020223
456000 -- [-1982.912] (-1985.395) (-2005.606) (-2005.380) * (-2001.725) [-1988.255] (-2003.477) (-1997.712) -- 0:08:09
457000 -- (-1981.423) (-2012.199) [-1995.430] (-1994.389) * (-2001.870) (-1996.634) [-1994.674] (-1990.684) -- 0:08:07
458000 -- [-1987.440] (-2011.861) (-1999.466) (-1992.159) * (-2008.932) (-2003.321) (-1995.777) [-1990.611] -- 0:08:06
459000 -- [-1999.351] (-2011.755) (-2020.271) (-2009.714) * [-1994.034] (-2001.492) (-1997.092) (-2001.854) -- 0:08:05
460000 -- [-1982.148] (-1991.368) (-1999.095) (-1999.868) * [-1993.329] (-2005.426) (-1995.161) (-1989.931) -- 0:08:03
Average standard deviation of split frequencies: 0.019667
461000 -- [-1997.338] (-1998.055) (-1990.020) (-1986.400) * [-1985.294] (-2001.112) (-1981.435) (-2000.638) -- 0:08:02
462000 -- (-1997.403) (-1996.200) [-1995.114] (-1996.463) * (-1995.590) (-2003.211) [-1994.562] (-1993.917) -- 0:08:02
463000 -- (-2003.586) [-1988.869] (-1994.410) (-1997.646) * (-1988.366) (-1995.453) (-1992.097) [-1993.630] -- 0:08:01
464000 -- (-2008.305) (-2014.753) (-2008.448) [-1982.313] * [-1984.614] (-1992.644) (-2005.689) (-1991.322) -- 0:07:59
465000 -- (-2005.021) (-1995.863) (-1990.421) [-1988.786] * [-1991.543] (-2004.883) (-2012.669) (-1985.495) -- 0:07:58
Average standard deviation of split frequencies: 0.020295
466000 -- (-1998.222) (-2006.068) (-1992.783) [-1986.246] * [-1985.894] (-1997.185) (-2011.598) (-1995.945) -- 0:07:57
467000 -- [-1992.495] (-1996.595) (-1996.349) (-2001.840) * (-2003.408) [-1997.789] (-1997.989) (-1990.307) -- 0:07:55
468000 -- [-1996.345] (-2003.052) (-1992.700) (-2000.092) * [-1995.081] (-2008.569) (-2003.039) (-2000.684) -- 0:07:55
469000 -- [-1997.285] (-1992.685) (-1986.020) (-1997.692) * (-1992.650) (-2007.917) [-1985.059] (-2016.424) -- 0:07:54
470000 -- (-2000.637) [-1985.548] (-1992.210) (-1995.946) * (-2009.577) (-1998.225) (-1998.236) [-1991.224] -- 0:07:52
Average standard deviation of split frequencies: 0.021315
471000 -- [-1982.834] (-1998.909) (-2009.246) (-1986.807) * (-2005.185) (-1992.072) [-1988.234] (-1987.879) -- 0:07:51
472000 -- (-2005.838) (-1997.961) (-1982.467) [-1992.098] * (-1995.389) [-1992.982] (-2001.490) (-2002.340) -- 0:07:50
473000 -- (-1991.402) [-1987.893] (-1982.214) (-1996.026) * (-2004.154) (-1995.943) [-1994.078] (-1991.544) -- 0:07:50
474000 -- [-1984.868] (-2004.697) (-1988.679) (-2009.348) * (-2009.037) (-1988.163) [-1999.174] (-1998.090) -- 0:07:48
475000 -- (-1999.908) (-2008.999) (-1995.033) [-1987.530] * (-1999.733) (-2003.498) [-1991.538] (-2005.979) -- 0:07:47
Average standard deviation of split frequencies: 0.022066
476000 -- (-1994.212) (-2009.285) (-2006.390) [-1987.921] * (-1995.040) (-1992.476) [-1991.315] (-2004.724) -- 0:07:46
477000 -- [-1989.699] (-2004.733) (-1987.614) (-2004.685) * (-2012.370) (-1990.095) [-1992.226] (-1994.383) -- 0:07:44
478000 -- [-1982.230] (-1985.245) (-1993.679) (-1999.513) * (-1999.778) [-1995.266] (-1997.394) (-2002.174) -- 0:07:44
479000 -- (-1985.235) [-1981.127] (-2003.976) (-1996.462) * (-2002.699) [-1995.652] (-2003.164) (-1987.651) -- 0:07:43
480000 -- [-1983.633] (-1985.998) (-1996.485) (-1999.218) * (-1989.717) [-1981.411] (-2002.054) (-1991.184) -- 0:07:42
Average standard deviation of split frequencies: 0.021760
481000 -- (-1983.757) (-1988.577) (-1998.260) [-1988.321] * (-2002.432) (-1999.974) [-1984.703] (-1988.133) -- 0:07:40
482000 -- (-1996.710) [-1986.757] (-1997.703) (-1983.117) * (-1997.733) (-2006.355) (-1997.429) [-1992.841] -- 0:07:39
483000 -- [-1998.388] (-1988.869) (-2012.249) (-2007.210) * (-1994.450) (-2007.880) [-1991.267] (-1993.858) -- 0:07:39
484000 -- (-1991.644) (-2001.819) (-2003.773) [-1988.864] * [-1989.700] (-2000.073) (-1995.270) (-2005.374) -- 0:07:37
485000 -- [-1997.134] (-1995.138) (-1994.339) (-1994.098) * (-1993.193) (-1983.667) [-1981.109] (-2012.277) -- 0:07:36
Average standard deviation of split frequencies: 0.022127
486000 -- (-1999.936) (-1990.275) (-1991.547) [-1991.631] * (-1984.322) (-1999.396) [-1984.649] (-2009.907) -- 0:07:35
487000 -- [-1990.988] (-1989.712) (-2006.787) (-1992.048) * (-2006.411) (-1999.859) [-1986.195] (-1995.612) -- 0:07:35
488000 -- (-1990.593) (-1997.764) (-2010.454) [-1979.878] * (-1987.109) (-1992.288) (-1989.801) [-1995.908] -- 0:07:33
489000 -- (-1988.421) (-2002.062) (-1997.677) [-1996.669] * (-1997.210) [-1993.049] (-2000.155) (-1998.491) -- 0:07:32
490000 -- (-1999.490) (-1995.676) [-1988.417] (-1998.475) * (-1990.449) [-1985.342] (-1998.098) (-2005.278) -- 0:07:31
Average standard deviation of split frequencies: 0.021106
491000 -- (-2007.946) [-1997.977] (-2006.693) (-2003.449) * [-1992.449] (-1997.175) (-1993.643) (-1992.285) -- 0:07:29
492000 -- [-1985.522] (-2003.338) (-1999.459) (-1987.243) * (-2002.569) [-1989.987] (-2008.767) (-1994.261) -- 0:07:29
493000 -- (-1987.227) [-1994.952] (-1994.211) (-2006.918) * (-1991.678) (-2002.876) [-1992.193] (-2001.255) -- 0:07:28
494000 -- (-2003.583) [-1994.562] (-1995.997) (-1997.658) * (-2001.969) (-1991.677) (-1987.488) [-2002.762] -- 0:07:27
495000 -- (-2015.895) (-1993.112) (-1978.657) [-1979.717] * (-2000.771) (-1994.900) [-1984.207] (-2006.583) -- 0:07:25
Average standard deviation of split frequencies: 0.021236
496000 -- [-1994.299] (-1993.611) (-1998.867) (-1992.905) * (-1993.168) [-1989.711] (-1996.141) (-2003.561) -- 0:07:25
497000 -- [-1981.390] (-2001.462) (-1996.013) (-1991.441) * (-1991.656) (-1987.158) [-1994.437] (-1991.356) -- 0:07:24
498000 -- (-1985.491) [-1989.899] (-1991.191) (-1993.089) * (-2012.866) [-1987.116] (-2001.441) (-1990.490) -- 0:07:22
499000 -- [-1992.596] (-2003.085) (-2002.253) (-1997.022) * (-2004.840) [-1982.214] (-2001.073) (-1992.895) -- 0:07:21
500000 -- [-1991.061] (-2003.455) (-2013.035) (-1984.887) * (-1992.301) (-1996.077) (-1986.004) [-1985.976] -- 0:07:21
Average standard deviation of split frequencies: 0.021509
501000 -- (-1997.260) (-2007.850) (-2015.578) [-1986.509] * (-1998.023) (-2004.919) (-1993.796) [-1990.384] -- 0:07:20
502000 -- [-1991.685] (-2001.308) (-2005.861) (-1980.868) * (-2003.063) (-1996.295) [-1990.209] (-1981.178) -- 0:07:18
503000 -- [-1987.637] (-2003.982) (-1990.943) (-1996.578) * [-2001.575] (-1989.595) (-2002.450) (-1989.265) -- 0:07:17
504000 -- (-1994.862) (-1989.554) (-2018.561) [-1986.100] * (-2010.876) (-1994.817) [-1989.095] (-2005.575) -- 0:07:16
505000 -- (-1988.417) [-1981.048] (-1999.247) (-2005.723) * (-2000.178) (-2006.311) [-1984.795] (-1991.409) -- 0:07:15
Average standard deviation of split frequencies: 0.021282
506000 -- (-1996.834) [-1985.932] (-2001.031) (-2000.200) * (-2013.162) (-2002.823) [-1993.907] (-2002.515) -- 0:07:14
507000 -- (-1981.635) (-1992.837) [-1998.941] (-2001.496) * (-2004.060) [-1979.044] (-1984.393) (-1999.379) -- 0:07:13
508000 -- (-2002.988) [-1991.568] (-1998.378) (-1994.570) * (-1997.511) (-1986.693) (-2002.599) [-1997.107] -- 0:07:12
509000 -- [-1990.269] (-2000.398) (-2008.986) (-1995.980) * (-2001.512) (-1996.072) (-2011.443) [-1990.970] -- 0:07:11
510000 -- [-1981.741] (-2004.763) (-1999.916) (-1996.754) * (-2001.423) (-1997.090) [-1991.186] (-1985.505) -- 0:07:10
Average standard deviation of split frequencies: 0.022847
511000 -- [-1983.247] (-2014.818) (-2000.792) (-1994.677) * [-1989.312] (-1996.951) (-2000.224) (-1990.195) -- 0:07:09
512000 -- [-1988.660] (-2011.043) (-2001.878) (-2008.390) * (-1991.841) [-1996.235] (-1998.614) (-1997.176) -- 0:07:07
513000 -- (-2002.212) (-2007.053) [-1993.173] (-2014.171) * (-2008.764) (-1995.369) (-2004.822) [-1989.206] -- 0:07:07
514000 -- (-2000.126) (-1995.362) [-1988.252] (-1997.672) * (-2004.067) (-1995.339) [-1995.517] (-1993.058) -- 0:07:06
515000 -- [-2004.232] (-1998.535) (-2012.281) (-2005.871) * (-1992.636) [-1991.651] (-1992.031) (-1990.259) -- 0:07:05
Average standard deviation of split frequencies: 0.023153
516000 -- (-1990.524) (-1995.986) (-1993.575) [-2004.937] * [-1986.081] (-2006.306) (-2004.252) (-1987.009) -- 0:07:03
517000 -- (-1997.199) (-2011.904) (-2012.695) [-1992.774] * (-2006.156) (-2006.585) (-2007.213) [-1988.674] -- 0:07:03
518000 -- [-1992.835] (-1991.937) (-2011.668) (-2002.022) * (-2007.307) (-1998.332) [-1995.065] (-1995.559) -- 0:07:02
519000 -- (-2020.403) (-2013.182) (-1988.233) [-1994.900] * [-1987.488] (-2025.774) (-1993.935) (-1994.590) -- 0:07:00
520000 -- [-1992.989] (-1999.737) (-1992.394) (-1994.633) * [-1991.086] (-1999.867) (-1998.431) (-1998.005) -- 0:07:00
Average standard deviation of split frequencies: 0.023342
521000 -- (-2001.174) (-2002.605) (-1996.834) [-2000.250] * [-1987.290] (-2000.504) (-1991.276) (-1993.195) -- 0:06:59
522000 -- (-1991.226) (-2010.787) (-1987.007) [-1993.365] * (-1996.125) (-1991.441) (-2004.380) [-1991.855] -- 0:06:57
523000 -- (-1992.139) (-1994.746) (-2003.734) [-1982.877] * (-1994.670) (-2013.836) [-1987.374] (-1996.624) -- 0:06:56
524000 -- (-1997.842) (-1999.510) (-1991.380) [-1987.105] * (-1996.932) [-1995.726] (-1990.710) (-1998.340) -- 0:06:56
525000 -- [-1997.277] (-2003.197) (-1986.835) (-1994.005) * (-1999.901) [-1995.811] (-2000.805) (-2022.648) -- 0:06:55
Average standard deviation of split frequencies: 0.023637
526000 -- (-2006.566) (-1995.835) (-1995.739) [-1984.310] * [-1987.708] (-2007.123) (-1997.848) (-1989.582) -- 0:06:53
527000 -- (-2001.973) (-2003.039) [-1981.487] (-1994.490) * (-2001.400) (-2005.050) [-2001.147] (-1999.519) -- 0:06:52
528000 -- (-2020.390) (-2001.454) [-1977.642] (-1988.563) * (-1995.718) [-1993.932] (-1998.572) (-1995.885) -- 0:06:52
529000 -- (-2002.607) (-1991.497) (-2012.639) [-1985.897] * (-2000.065) [-1990.120] (-1993.900) (-2006.637) -- 0:06:50
530000 -- [-1985.462] (-2004.180) (-2014.226) (-1992.789) * (-2003.765) (-1994.092) [-1982.442] (-1996.664) -- 0:06:49
Average standard deviation of split frequencies: 0.024512
531000 -- (-1998.896) [-1984.237] (-1998.482) (-2006.181) * (-2010.613) [-1990.113] (-1993.706) (-2015.391) -- 0:06:48
532000 -- (-1988.344) [-1997.066] (-1996.835) (-1998.674) * [-1995.957] (-2001.980) (-2014.059) (-1986.185) -- 0:06:47
533000 -- (-1989.772) (-1983.119) [-1995.811] (-2006.684) * [-1993.225] (-2000.680) (-2009.557) (-2000.539) -- 0:06:46
534000 -- (-1995.637) [-1985.315] (-2000.331) (-1999.486) * [-1991.196] (-2008.499) (-1995.283) (-1995.767) -- 0:06:45
535000 -- (-2019.500) [-2000.300] (-1996.234) (-1996.877) * (-1998.610) (-1989.194) (-2008.734) [-1995.435] -- 0:06:45
Average standard deviation of split frequencies: 0.024900
536000 -- (-2001.532) (-1999.108) (-1990.060) [-2002.260] * (-1996.099) [-1980.551] (-2004.116) (-1997.249) -- 0:06:43
537000 -- (-2009.453) (-1992.821) (-2005.038) [-1997.923] * (-1988.120) (-1998.265) (-1996.920) [-2004.365] -- 0:06:42
538000 -- [-1999.662] (-1993.121) (-2005.730) (-2005.102) * (-2006.342) [-1985.722] (-2013.282) (-1996.584) -- 0:06:41
539000 -- (-1997.050) [-1994.678] (-2005.518) (-2002.818) * (-2003.234) (-1991.225) (-2005.758) [-1990.331] -- 0:06:40
540000 -- (-1989.191) [-1991.188] (-2003.448) (-2000.802) * [-1986.933] (-1993.051) (-1991.952) (-1995.964) -- 0:06:39
Average standard deviation of split frequencies: 0.024958
541000 -- (-2011.040) (-1980.905) (-2010.549) [-1990.512] * (-1997.419) (-1998.584) [-1997.013] (-1996.193) -- 0:06:38
542000 -- (-1995.981) (-1986.951) (-2002.566) [-1989.557] * (-2004.743) [-1997.222] (-1988.348) (-1990.880) -- 0:06:37
543000 -- (-2007.727) (-1991.196) (-1997.272) [-1996.733] * (-2003.177) (-1998.959) (-1993.016) [-1995.959] -- 0:06:36
544000 -- (-2011.911) [-1994.207] (-2018.628) (-1989.725) * [-1989.074] (-2010.334) (-2006.462) (-1998.037) -- 0:06:35
545000 -- (-2008.944) [-1986.626] (-1992.324) (-1989.685) * (-1989.204) (-2003.224) (-2002.918) [-1982.152] -- 0:06:34
Average standard deviation of split frequencies: 0.024741
546000 -- [-1978.254] (-1992.406) (-1989.442) (-2001.966) * (-2007.843) (-2007.885) [-2006.258] (-1997.624) -- 0:06:33
547000 -- (-2001.962) [-1984.568] (-1993.903) (-1981.691) * (-2021.115) [-1992.956] (-1996.665) (-2007.919) -- 0:06:32
548000 -- (-2005.533) [-1996.463] (-1998.360) (-1985.269) * [-1984.125] (-1998.375) (-2000.784) (-1996.394) -- 0:06:31
549000 -- (-1986.228) [-1993.843] (-2005.879) (-1994.095) * (-1990.134) (-2008.305) (-1995.184) [-1991.620] -- 0:06:30
550000 -- (-1996.693) (-1991.374) (-1999.720) [-1993.656] * (-1989.899) [-1995.456] (-2001.344) (-2014.014) -- 0:06:29
Average standard deviation of split frequencies: 0.025067
551000 -- [-1982.756] (-2008.689) (-2003.364) (-1986.537) * [-1992.113] (-1998.301) (-1994.347) (-2013.958) -- 0:06:28
552000 -- [-1991.766] (-1989.022) (-2000.476) (-1996.678) * (-1993.904) [-1988.324] (-2003.140) (-1998.872) -- 0:06:27
553000 -- (-2002.490) [-1984.032] (-2013.160) (-1991.795) * [-1986.311] (-2002.974) (-1994.628) (-1991.535) -- 0:06:26
554000 -- (-2010.231) [-1995.944] (-1991.949) (-1992.471) * [-1990.759] (-2016.237) (-1981.613) (-1998.328) -- 0:06:25
555000 -- (-2001.922) [-1997.190] (-1986.144) (-2000.242) * (-1993.805) (-1997.456) (-1989.917) [-1994.803] -- 0:06:24
Average standard deviation of split frequencies: 0.024906
556000 -- (-1993.909) (-2000.845) (-1999.012) [-1988.125] * [-1995.965] (-1992.765) (-1991.974) (-1999.235) -- 0:06:23
557000 -- [-1985.036] (-2009.329) (-1991.015) (-1992.532) * [-1986.338] (-2006.187) (-1993.099) (-2011.563) -- 0:06:22
558000 -- (-1988.463) (-2003.000) (-1996.147) [-1982.338] * (-2000.317) (-1999.319) (-1998.182) [-1988.573] -- 0:06:21
559000 -- (-2016.609) (-2002.490) [-1990.550] (-1994.110) * (-2003.853) (-2003.605) (-1997.078) [-1986.347] -- 0:06:21
560000 -- (-2007.364) (-2001.996) [-1985.351] (-1987.824) * (-1999.905) (-2001.799) (-2008.696) [-1983.647] -- 0:06:21
Average standard deviation of split frequencies: 0.026065
561000 -- (-1995.035) (-1993.131) [-1989.966] (-1998.809) * (-1993.528) (-2000.206) [-1996.048] (-1999.458) -- 0:06:20
562000 -- (-2001.126) (-2002.411) (-1998.081) [-1990.109] * [-1989.274] (-2021.741) (-2008.299) (-1991.019) -- 0:06:19
563000 -- (-2008.225) (-1992.960) [-1994.491] (-1993.024) * [-1990.779] (-1995.025) (-1999.084) (-1992.970) -- 0:06:18
564000 -- (-2009.159) [-1979.947] (-1997.881) (-1997.057) * (-1986.658) [-1986.664] (-1988.259) (-2010.693) -- 0:06:18
565000 -- (-2001.382) (-1993.560) [-1994.651] (-1987.686) * (-2002.240) [-1991.054] (-1998.465) (-1999.374) -- 0:06:17
Average standard deviation of split frequencies: 0.026053
566000 -- (-2007.672) [-1991.723] (-2001.936) (-1993.274) * (-1988.070) (-1985.176) (-2001.153) [-1990.155] -- 0:06:16
567000 -- (-1996.658) [-1994.845] (-2013.671) (-2003.527) * (-1990.326) [-1995.274] (-1992.832) (-1991.922) -- 0:06:15
568000 -- (-1999.111) [-2001.523] (-2002.176) (-1995.428) * (-1991.367) (-2001.332) [-1983.559] (-1988.067) -- 0:06:14
569000 -- (-2002.841) (-2000.559) (-2005.216) [-1986.737] * (-1987.813) (-2001.892) [-1991.982] (-1991.533) -- 0:06:14
570000 -- (-2014.606) (-1995.196) (-2004.256) [-2003.331] * (-1996.512) (-2002.954) (-2000.877) [-1991.072] -- 0:06:13
Average standard deviation of split frequencies: 0.024808
571000 -- (-1999.087) (-1998.199) [-1986.072] (-1994.706) * [-1991.975] (-1994.782) (-2012.645) (-1996.042) -- 0:06:13
572000 -- (-1997.636) [-1989.850] (-1995.257) (-2002.218) * (-1984.733) (-1988.026) (-2001.674) [-1994.576] -- 0:06:12
573000 -- [-1980.029] (-1994.908) (-1993.898) (-1984.226) * (-2000.778) (-1999.209) (-1994.491) [-1989.821] -- 0:06:11
574000 -- (-2002.243) (-1998.833) [-1983.512] (-2002.005) * (-1992.275) [-1991.054] (-1999.897) (-1999.509) -- 0:06:11
575000 -- (-2026.107) [-1989.421] (-1992.809) (-1992.303) * (-1989.674) (-2018.390) [-1989.519] (-1991.890) -- 0:06:10
Average standard deviation of split frequencies: 0.024118
576000 -- (-2002.580) (-1993.659) (-1993.265) [-1994.502] * [-1982.858] (-1995.153) (-2003.696) (-1996.079) -- 0:06:09
577000 -- (-1994.841) [-1991.802] (-2001.109) (-1986.876) * (-1987.853) (-2002.199) (-1999.722) [-1990.254] -- 0:06:08
578000 -- (-1995.361) [-1989.328] (-2005.702) (-2003.101) * (-1990.597) (-1992.460) (-2009.742) [-1992.576] -- 0:06:07
579000 -- (-2008.341) (-1988.240) (-2006.539) [-1992.713] * (-1990.154) (-1988.323) (-1997.949) [-1987.766] -- 0:06:07
580000 -- (-2006.104) (-1991.480) (-2014.059) [-1990.215] * (-2017.189) (-1998.887) [-1989.478] (-2008.102) -- 0:06:06
Average standard deviation of split frequencies: 0.023366
581000 -- (-1999.512) (-1994.515) (-2011.813) [-1992.352] * (-2005.853) (-1991.295) [-1983.954] (-1993.822) -- 0:06:05
582000 -- [-2002.459] (-1995.219) (-2003.794) (-1999.174) * [-1997.852] (-2012.881) (-2006.327) (-1996.856) -- 0:06:05
583000 -- [-1992.831] (-1988.200) (-2003.166) (-1997.570) * [-1986.029] (-2000.745) (-2010.496) (-2005.982) -- 0:06:04
584000 -- [-1992.091] (-1995.819) (-2015.831) (-2004.211) * (-1987.856) (-1998.757) (-2000.392) [-1984.502] -- 0:06:04
585000 -- (-1983.710) [-1988.035] (-1997.946) (-2007.242) * [-1982.245] (-1992.712) (-2013.913) (-1995.495) -- 0:06:03
Average standard deviation of split frequencies: 0.023128
586000 -- (-2010.823) [-1988.172] (-1994.813) (-2001.075) * (-1995.367) (-1992.333) (-2008.172) [-1993.023] -- 0:06:02
587000 -- (-2013.990) [-1982.759] (-1993.166) (-1998.296) * (-1995.066) (-1997.619) (-1993.427) [-1986.502] -- 0:06:01
588000 -- (-2000.067) (-1990.871) [-1990.281] (-1995.751) * (-1990.156) [-2003.383] (-1994.529) (-1986.833) -- 0:06:00
589000 -- (-2002.396) (-2005.276) [-1988.304] (-1992.310) * [-1994.491] (-2002.784) (-1996.541) (-1999.673) -- 0:06:00
590000 -- (-1999.510) (-2005.002) [-1984.018] (-1986.899) * (-1990.550) [-1983.880] (-2004.733) (-1995.529) -- 0:05:59
Average standard deviation of split frequencies: 0.023469
591000 -- [-1995.287] (-1995.831) (-1996.445) (-1987.041) * [-1987.665] (-1997.008) (-1995.839) (-1994.662) -- 0:05:59
592000 -- [-1982.360] (-2002.963) (-1993.392) (-1997.836) * (-1994.988) (-1992.709) [-1988.296] (-1984.806) -- 0:05:58
593000 -- [-1999.762] (-2011.882) (-1994.679) (-2008.500) * (-1997.270) (-2003.602) [-1997.955] (-1995.090) -- 0:05:57
594000 -- [-1982.945] (-2001.045) (-2001.972) (-1988.983) * (-1998.123) (-2000.221) [-1991.309] (-2023.306) -- 0:05:56
595000 -- (-1986.173) (-2009.603) [-1982.157] (-1984.551) * [-1995.216] (-1994.789) (-2008.235) (-2001.447) -- 0:05:55
Average standard deviation of split frequencies: 0.024173
596000 -- (-1991.130) (-2005.189) [-1993.884] (-1996.422) * (-1989.344) [-1985.372] (-2002.044) (-1993.814) -- 0:05:55
597000 -- (-1994.094) (-2009.716) (-2008.592) [-1981.540] * (-1986.139) [-1984.988] (-2006.578) (-1994.845) -- 0:05:54
598000 -- [-1990.772] (-2006.370) (-2000.489) (-1996.982) * (-1994.215) [-1993.415] (-1995.258) (-1991.855) -- 0:05:53
599000 -- [-1986.006] (-2007.488) (-2000.643) (-2005.176) * (-2001.698) [-2003.024] (-2003.779) (-1992.091) -- 0:05:53
600000 -- [-2000.046] (-2006.473) (-2009.695) (-1992.289) * [-1994.779] (-1995.094) (-2010.081) (-1986.194) -- 0:05:52
Average standard deviation of split frequencies: 0.025827
601000 -- [-1980.408] (-1998.259) (-2002.864) (-2007.551) * (-1996.818) (-1999.063) (-1999.314) [-1987.702] -- 0:05:51
602000 -- (-2007.193) (-1995.535) [-1983.681] (-2003.947) * (-1988.443) (-1987.385) (-2011.825) [-1989.734] -- 0:05:51
603000 -- (-2001.788) (-2003.298) [-1990.151] (-1999.895) * (-2006.068) [-1985.316] (-2004.189) (-1988.664) -- 0:05:50
604000 -- (-1996.460) (-1996.619) [-1994.958] (-2004.769) * (-1991.324) (-1997.777) (-2016.732) [-1985.136] -- 0:05:49
605000 -- (-1998.247) (-2005.198) [-1997.746] (-1997.514) * [-1992.726] (-1986.408) (-2006.053) (-2003.928) -- 0:05:48
Average standard deviation of split frequencies: 0.026943
606000 -- (-1999.533) [-1987.618] (-1997.756) (-2014.593) * [-1993.297] (-1993.963) (-2014.953) (-1996.454) -- 0:05:47
607000 -- (-1992.676) [-1981.500] (-1991.849) (-2008.147) * (-1989.084) (-1983.680) (-2028.740) [-1995.689] -- 0:05:47
608000 -- (-2008.845) (-1993.216) (-2011.257) [-1991.677] * (-1994.591) [-1993.974] (-2009.879) (-1995.941) -- 0:05:46
609000 -- (-2001.226) (-2000.504) (-2005.787) [-1981.042] * [-1984.439] (-1998.701) (-2001.109) (-1991.218) -- 0:05:46
610000 -- (-1984.923) (-1999.997) (-2010.079) [-1986.159] * (-1982.388) [-1986.893] (-2004.739) (-2016.618) -- 0:05:45
Average standard deviation of split frequencies: 0.027205
611000 -- [-1988.398] (-2000.726) (-1999.426) (-1991.079) * [-1997.174] (-1998.707) (-2004.707) (-2008.799) -- 0:05:44
612000 -- (-1997.451) (-2007.440) (-1992.287) [-1985.392] * (-2001.850) [-1984.101] (-1998.624) (-1993.848) -- 0:05:43
613000 -- (-2005.609) (-1993.749) [-1991.315] (-2002.685) * [-1999.891] (-1994.636) (-2012.504) (-1996.351) -- 0:05:42
614000 -- (-2017.504) (-1987.222) (-1996.911) [-2003.093] * (-2003.290) (-1988.310) (-2002.605) [-1988.299] -- 0:05:42
615000 -- [-1995.191] (-1993.287) (-1994.163) (-1996.529) * (-2005.013) [-1986.041] (-2003.265) (-1988.920) -- 0:05:41
Average standard deviation of split frequencies: 0.027944
616000 -- (-1986.416) [-1994.084] (-1991.261) (-1999.188) * (-1995.413) [-1990.188] (-1992.585) (-2002.916) -- 0:05:40
617000 -- [-1987.732] (-2002.067) (-1987.843) (-2009.180) * (-2008.246) [-1990.928] (-1998.804) (-2008.158) -- 0:05:39
618000 -- (-1986.093) (-1992.861) (-2000.909) [-1983.473] * (-1993.483) [-1987.487] (-1994.257) (-2010.642) -- 0:05:38
619000 -- [-1983.968] (-1993.406) (-1989.645) (-2003.940) * (-2001.803) [-1988.754] (-2004.863) (-2012.678) -- 0:05:37
620000 -- (-1987.418) (-2006.401) (-2001.993) [-1981.420] * [-1986.506] (-2002.656) (-2006.251) (-2011.307) -- 0:05:36
Average standard deviation of split frequencies: 0.028769
621000 -- (-1993.378) (-2007.776) (-1994.895) [-1979.682] * [-1987.341] (-1990.796) (-1990.661) (-2009.560) -- 0:05:35
622000 -- (-1996.976) (-2009.278) (-1992.761) [-1979.898] * [-1992.467] (-1988.602) (-2007.285) (-1997.986) -- 0:05:34
623000 -- (-2005.670) (-1997.701) [-1998.049] (-1998.516) * (-2012.089) (-1993.573) [-2003.031] (-2008.998) -- 0:05:33
624000 -- (-2001.878) (-1982.286) (-1999.684) [-1998.183] * [-1984.756] (-1986.204) (-1998.964) (-2002.386) -- 0:05:32
625000 -- (-2011.756) (-1993.274) (-2000.944) [-1993.350] * (-1999.490) (-1985.055) [-1981.747] (-2019.512) -- 0:05:31
Average standard deviation of split frequencies: 0.028661
626000 -- (-2005.470) (-1996.467) (-1996.697) [-1994.531] * (-1986.341) [-1987.829] (-1982.584) (-2004.015) -- 0:05:30
627000 -- (-1982.169) (-1999.018) [-1995.272] (-1991.391) * (-2002.610) [-1996.349] (-2006.958) (-2011.188) -- 0:05:29
628000 -- (-1988.003) (-1996.926) [-2002.222] (-1992.564) * (-2006.277) [-1989.654] (-1997.630) (-2006.502) -- 0:05:28
629000 -- (-2007.864) (-2006.646) (-1987.147) [-1992.995] * (-2002.655) [-1986.590] (-1984.654) (-2008.148) -- 0:05:27
630000 -- (-1990.681) (-2001.219) (-2002.990) [-1986.618] * (-2011.554) (-1988.270) [-1990.075] (-2007.354) -- 0:05:26
Average standard deviation of split frequencies: 0.028812
631000 -- [-1984.713] (-2022.720) (-1997.169) (-1999.408) * (-2006.785) [-1991.409] (-1986.321) (-1990.316) -- 0:05:25
632000 -- (-1993.973) (-2010.086) (-2012.973) [-1991.211] * [-1995.022] (-1993.921) (-2000.819) (-1998.077) -- 0:05:24
633000 -- (-1986.336) (-2005.836) (-1993.226) [-1984.423] * (-2010.913) [-1987.360] (-1990.747) (-2014.062) -- 0:05:23
634000 -- (-1993.671) (-1995.075) (-2014.050) [-1988.614] * [-1990.842] (-1986.340) (-1996.717) (-1999.778) -- 0:05:22
635000 -- (-2000.978) [-1990.974] (-2007.929) (-2001.438) * (-1996.358) (-1992.064) [-2005.291] (-2014.435) -- 0:05:21
Average standard deviation of split frequencies: 0.028435
636000 -- [-1994.752] (-2008.456) (-2011.983) (-1986.588) * (-1993.517) [-1982.327] (-2000.560) (-2003.984) -- 0:05:20
637000 -- (-2006.713) (-2001.336) (-1999.874) [-1984.424] * (-1998.379) (-1988.951) (-1997.674) [-1986.844] -- 0:05:19
638000 -- (-2010.478) (-1993.637) (-1999.755) [-1980.806] * [-1998.562] (-1988.013) (-1993.877) (-1988.534) -- 0:05:18
639000 -- (-2002.253) [-1986.172] (-1990.836) (-1993.380) * [-1992.691] (-2003.838) (-1997.538) (-2010.206) -- 0:05:17
640000 -- (-2010.009) [-1989.216] (-1995.707) (-2004.377) * (-1986.700) (-2000.897) [-1987.057] (-2006.556) -- 0:05:16
Average standard deviation of split frequencies: 0.028005
641000 -- (-2001.718) (-2013.371) (-2002.611) [-1989.535] * (-1998.938) [-1989.012] (-1989.998) (-2000.817) -- 0:05:15
642000 -- (-1989.913) [-1987.684] (-2013.592) (-1994.913) * (-1992.855) (-1988.101) [-2003.009] (-2009.862) -- 0:05:14
643000 -- (-1993.921) (-1989.233) (-1990.131) [-1984.313] * (-1999.976) [-1986.854] (-1994.964) (-2003.824) -- 0:05:13
644000 -- (-1997.379) [-1998.458] (-2012.285) (-1980.584) * (-2014.992) (-1992.963) (-1996.038) [-1986.150] -- 0:05:12
645000 -- [-1992.684] (-1994.260) (-2015.092) (-1993.000) * [-1991.663] (-1997.842) (-1990.002) (-2016.009) -- 0:05:11
Average standard deviation of split frequencies: 0.027044
646000 -- (-1999.852) [-1987.073] (-1998.796) (-1994.677) * [-2000.916] (-1989.597) (-1992.283) (-2014.873) -- 0:05:10
647000 -- (-1999.984) [-1990.184] (-1986.921) (-2003.621) * (-1998.171) (-1988.783) (-1999.710) [-1993.642] -- 0:05:09
648000 -- (-2019.001) (-1996.371) [-1997.467] (-2001.803) * (-2000.377) [-1996.824] (-2004.789) (-1992.788) -- 0:05:09
649000 -- (-1994.414) (-1984.565) [-1989.971] (-2012.307) * (-1995.120) (-1998.297) (-2001.724) [-1989.614] -- 0:05:07
650000 -- [-1977.026] (-2003.526) (-1991.330) (-2008.128) * (-1996.555) [-2011.510] (-1996.519) (-1999.500) -- 0:05:06
Average standard deviation of split frequencies: 0.026850
651000 -- (-2001.913) (-2000.868) [-1991.115] (-2016.880) * [-1994.829] (-2010.088) (-1998.888) (-1998.149) -- 0:05:06
652000 -- (-2003.920) [-1994.796] (-1997.655) (-1987.565) * [-1998.176] (-2011.176) (-1983.856) (-2001.726) -- 0:05:04
653000 -- (-2003.147) (-1981.885) (-1987.766) [-1994.179] * [-1984.278] (-2001.081) (-1988.767) (-1994.466) -- 0:05:03
654000 -- [-2001.995] (-1995.373) (-1995.154) (-1991.880) * (-1993.015) (-1995.838) [-1989.025] (-2002.156) -- 0:05:03
655000 -- (-1987.459) (-2005.270) (-1993.179) [-1985.282] * (-1991.829) [-1978.831] (-1990.572) (-1999.802) -- 0:05:01
Average standard deviation of split frequencies: 0.026806
656000 -- (-1985.318) (-1999.087) (-2009.555) [-1989.548] * (-2000.376) [-1995.249] (-2004.527) (-2005.257) -- 0:05:01
657000 -- (-1995.077) (-2002.624) (-1999.381) [-1983.000] * (-2002.456) (-1988.444) [-1995.293] (-1994.410) -- 0:05:00
658000 -- [-1980.616] (-1993.937) (-1993.070) (-1989.009) * (-1994.476) (-1988.899) (-2011.047) [-1988.636] -- 0:04:59
659000 -- (-2005.212) [-1990.761] (-1994.378) (-1992.966) * (-1991.826) [-1988.811] (-1998.074) (-1993.885) -- 0:04:58
660000 -- (-2000.130) (-1991.007) (-2001.597) [-1990.702] * [-1984.929] (-1986.255) (-2013.106) (-2000.465) -- 0:04:57
Average standard deviation of split frequencies: 0.026314
661000 -- [-1986.412] (-1997.728) (-1995.246) (-1989.502) * (-1997.947) (-1993.120) [-1990.528] (-2002.003) -- 0:04:56
662000 -- [-1996.906] (-1994.078) (-1995.980) (-1988.562) * (-1998.279) (-2004.799) (-1991.549) [-1993.754] -- 0:04:55
663000 -- (-1997.865) (-1993.274) (-1999.149) [-1995.859] * (-2005.365) (-1993.656) (-1994.405) [-1988.244] -- 0:04:54
664000 -- (-2006.303) [-2004.123] (-2009.756) (-1992.992) * [-1999.566] (-2004.139) (-2007.621) (-1991.265) -- 0:04:53
665000 -- (-2002.662) [-1999.910] (-1991.858) (-1987.954) * (-1999.522) [-1987.017] (-2005.525) (-1978.339) -- 0:04:52
Average standard deviation of split frequencies: 0.025739
666000 -- (-1999.583) [-1991.773] (-1997.480) (-1984.625) * (-1996.111) (-1989.211) (-1999.197) [-1986.236] -- 0:04:51
667000 -- (-1994.110) (-1991.253) [-1994.484] (-2008.585) * [-1984.321] (-1987.518) (-2007.784) (-2013.142) -- 0:04:50
668000 -- (-1983.324) (-1987.760) [-1988.439] (-2011.575) * (-1989.587) [-1991.976] (-1997.338) (-1998.447) -- 0:04:49
669000 -- (-1986.688) [-1991.057] (-2000.787) (-2008.081) * (-1995.422) (-2006.911) [-1992.866] (-1980.895) -- 0:04:48
670000 -- (-1996.861) [-1996.171] (-1997.022) (-2020.038) * [-1997.050] (-1994.737) (-1996.616) (-1998.811) -- 0:04:47
Average standard deviation of split frequencies: 0.025624
671000 -- [-1988.770] (-1996.098) (-1996.161) (-1989.755) * (-2001.514) (-2004.952) [-1996.819] (-1995.193) -- 0:04:46
672000 -- (-1979.830) (-2000.370) [-1985.198] (-2003.852) * (-2005.441) (-1994.160) (-2010.177) [-1993.906] -- 0:04:45
673000 -- (-2001.443) [-2003.845] (-1998.793) (-2004.489) * (-1997.172) (-1986.438) (-1999.802) [-1982.461] -- 0:04:44
674000 -- (-2003.683) (-2003.702) (-1994.110) [-1999.631] * (-2001.928) [-1988.812] (-1990.376) (-1994.056) -- 0:04:43
675000 -- (-2001.281) [-1983.390] (-1995.399) (-1997.795) * (-2001.381) (-1993.209) (-1999.541) [-1993.831] -- 0:04:42
Average standard deviation of split frequencies: 0.025379
676000 -- [-1985.845] (-2011.131) (-1985.100) (-1993.290) * (-1997.786) (-1997.028) [-1986.832] (-1996.020) -- 0:04:41
677000 -- (-2000.104) [-1995.799] (-2008.774) (-1999.307) * (-1995.339) [-1986.919] (-2000.494) (-2001.178) -- 0:04:41
678000 -- (-1994.509) (-2003.166) (-1997.316) [-1993.844] * (-2002.747) [-1987.914] (-1996.989) (-1988.587) -- 0:04:39
679000 -- (-1992.196) (-1999.588) (-2017.463) [-1991.507] * [-1994.595] (-1986.826) (-1987.951) (-2015.455) -- 0:04:38
680000 -- [-1985.134] (-1995.594) (-1992.835) (-1996.419) * [-1985.271] (-1997.679) (-1994.784) (-2004.517) -- 0:04:38
Average standard deviation of split frequencies: 0.026003
681000 -- [-1983.750] (-1995.211) (-1993.439) (-1996.687) * [-1988.389] (-1999.549) (-1999.504) (-1998.600) -- 0:04:37
682000 -- (-1987.231) (-1990.901) [-1993.583] (-1997.945) * [-1993.538] (-1982.030) (-2002.039) (-2003.748) -- 0:04:36
683000 -- (-1999.962) (-1993.890) (-2021.577) [-1993.707] * (-1983.725) (-1998.622) [-1987.561] (-1998.693) -- 0:04:35
684000 -- (-1984.326) [-1982.915] (-1996.422) (-2013.285) * (-1992.982) [-1980.698] (-1987.075) (-1994.871) -- 0:04:34
685000 -- (-1986.566) [-1987.920] (-2004.117) (-2022.447) * (-1989.352) (-1989.164) [-1993.587] (-1998.591) -- 0:04:33
Average standard deviation of split frequencies: 0.026092
686000 -- [-1986.318] (-1997.459) (-1987.068) (-2018.286) * (-1994.994) (-1993.838) (-2006.665) [-1998.908] -- 0:04:32
687000 -- [-1990.742] (-1998.282) (-1998.626) (-1996.054) * [-1984.350] (-2004.750) (-1996.640) (-1991.745) -- 0:04:31
688000 -- (-1997.070) (-2000.332) (-2000.939) [-1994.539] * [-1986.925] (-2010.060) (-1990.889) (-1991.671) -- 0:04:30
689000 -- (-1997.770) (-1999.355) (-2001.800) [-1997.607] * (-2005.628) (-1988.222) [-1985.960] (-1993.472) -- 0:04:29
690000 -- (-1997.838) (-2000.475) (-2007.971) [-1995.371] * (-1993.772) [-1988.878] (-2007.537) (-2007.105) -- 0:04:28
Average standard deviation of split frequencies: 0.026453
691000 -- [-1986.074] (-2001.444) (-2009.193) (-1998.049) * (-1986.409) [-1979.029] (-2013.951) (-2009.416) -- 0:04:27
692000 -- (-1997.326) [-1985.835] (-2007.397) (-1996.107) * (-1992.349) (-1993.380) [-1985.191] (-2000.932) -- 0:04:26
693000 -- (-1987.664) [-1991.220] (-1991.054) (-1994.565) * (-1990.897) [-1998.270] (-2007.140) (-2001.749) -- 0:04:25
694000 -- [-1974.653] (-1991.671) (-1987.185) (-1999.752) * (-1987.772) (-1995.786) (-1990.383) [-1996.463] -- 0:04:24
695000 -- (-1991.877) (-1987.971) [-1984.379] (-2007.996) * (-1997.409) (-2003.376) [-1989.889] (-1989.648) -- 0:04:23
Average standard deviation of split frequencies: 0.026476
696000 -- [-1987.229] (-1998.422) (-1989.973) (-2002.482) * (-1995.249) (-2006.892) [-1984.678] (-1988.133) -- 0:04:22
697000 -- [-1987.811] (-1995.286) (-1984.388) (-2006.851) * [-1998.881] (-2002.273) (-1988.256) (-1990.719) -- 0:04:22
698000 -- [-1991.907] (-1992.456) (-1996.945) (-2004.017) * [-2004.798] (-2001.294) (-1996.582) (-2000.731) -- 0:04:20
699000 -- (-1997.025) [-1987.050] (-1995.251) (-2025.191) * [-1998.092] (-1988.779) (-1995.732) (-2005.862) -- 0:04:20
700000 -- (-2002.136) [-2005.400] (-1985.329) (-2008.882) * (-1996.332) (-1999.420) [-1992.410] (-1990.857) -- 0:04:19
Average standard deviation of split frequencies: 0.026402
701000 -- (-1983.732) (-2007.699) [-1981.693] (-2002.209) * [-1997.088] (-2006.911) (-1994.595) (-2005.410) -- 0:04:18
702000 -- [-1993.777] (-1988.992) (-1997.936) (-2009.748) * [-1994.113] (-1994.427) (-1990.484) (-2005.460) -- 0:04:17
703000 -- (-2000.673) (-2003.923) [-1992.909] (-1995.246) * (-1985.521) (-1997.246) [-1987.549] (-2001.825) -- 0:04:16
704000 -- [-1988.880] (-1988.034) (-1994.145) (-1998.183) * (-2006.907) (-1989.141) [-1993.162] (-2001.266) -- 0:04:15
705000 -- (-1998.796) [-1999.758] (-1996.501) (-1994.585) * (-1990.671) [-1979.799] (-1985.455) (-2010.702) -- 0:04:14
Average standard deviation of split frequencies: 0.025899
706000 -- (-1991.802) (-1999.006) (-2006.991) [-2006.522] * (-1991.561) (-2000.608) [-1980.706] (-2003.245) -- 0:04:13
707000 -- (-1984.677) [-1986.359] (-1993.298) (-2013.507) * [-1991.641] (-1992.636) (-1991.500) (-2021.084) -- 0:04:12
708000 -- [-1985.079] (-1987.381) (-1996.882) (-1989.394) * (-2018.841) [-1993.269] (-2006.214) (-1990.269) -- 0:04:11
709000 -- (-2003.776) (-1989.028) (-2007.709) [-1993.072] * (-1999.389) [-1987.672] (-2011.450) (-1986.919) -- 0:04:10
710000 -- (-1989.296) (-1997.685) (-1991.413) [-1991.497] * [-1989.639] (-1990.007) (-1999.303) (-1998.535) -- 0:04:09
Average standard deviation of split frequencies: 0.025870
711000 -- (-1999.691) (-1994.686) (-2003.443) [-1988.569] * [-1991.624] (-1999.038) (-1997.099) (-1997.117) -- 0:04:08
712000 -- (-2007.018) (-1997.710) (-1992.206) [-1983.001] * (-1998.283) (-1995.097) (-2000.573) [-1983.206] -- 0:04:07
713000 -- [-1990.692] (-1997.672) (-2002.407) (-1986.569) * (-2002.625) [-1980.883] (-2000.566) (-1997.076) -- 0:04:07
714000 -- (-1991.327) [-1982.018] (-1991.305) (-1997.622) * [-1983.900] (-1990.932) (-1998.897) (-2004.449) -- 0:04:06
715000 -- [-1990.879] (-2002.017) (-1994.886) (-1990.840) * (-1993.642) (-1988.359) [-1990.522] (-2001.107) -- 0:04:05
Average standard deviation of split frequencies: 0.025557
716000 -- [-1994.877] (-1989.703) (-2012.566) (-1990.937) * (-2011.795) (-1997.880) [-1983.660] (-1992.340) -- 0:04:04
717000 -- (-1988.387) [-1989.753] (-2010.375) (-1981.493) * [-1990.605] (-2010.695) (-1986.186) (-1998.512) -- 0:04:03
718000 -- (-2001.738) [-1987.719] (-2016.192) (-2005.711) * (-1999.024) (-1993.026) [-1994.455] (-2000.024) -- 0:04:02
719000 -- (-2011.074) [-1986.998] (-2008.619) (-2002.954) * (-2001.921) (-1993.306) [-1988.193] (-2011.816) -- 0:04:01
720000 -- [-1993.563] (-1998.157) (-1998.332) (-1994.639) * (-1999.149) [-1988.036] (-1993.948) (-2003.494) -- 0:04:00
Average standard deviation of split frequencies: 0.025134
721000 -- (-2003.375) [-2003.327] (-1984.198) (-1995.854) * (-2010.439) (-1989.444) [-1999.184] (-2000.075) -- 0:03:59
722000 -- (-1999.484) [-1987.988] (-1989.572) (-1991.692) * (-1994.779) [-2002.474] (-1995.077) (-2002.157) -- 0:03:58
723000 -- [-1987.705] (-1986.367) (-2003.379) (-2002.086) * [-1998.423] (-2004.304) (-1991.176) (-2015.864) -- 0:03:57
724000 -- (-1999.139) [-1995.996] (-2001.560) (-1988.598) * (-1990.410) (-2000.341) (-2002.921) [-1989.698] -- 0:03:57
725000 -- [-1997.241] (-2003.378) (-1991.596) (-1989.466) * (-1992.488) (-1992.612) (-1990.638) [-1996.566] -- 0:03:55
Average standard deviation of split frequencies: 0.024753
726000 -- (-2001.626) (-1997.816) (-2000.606) [-1986.085] * (-2008.324) [-1984.728] (-1978.272) (-2009.637) -- 0:03:55
727000 -- [-1992.522] (-1997.705) (-1986.288) (-1988.707) * (-1997.420) [-1981.381] (-1999.361) (-2011.628) -- 0:03:54
728000 -- (-1991.569) (-2004.005) (-1999.523) [-1988.599] * (-1993.603) (-1993.766) [-1996.302] (-1988.265) -- 0:03:53
729000 -- [-1987.340] (-2004.127) (-1995.114) (-2002.842) * [-1991.640] (-2003.223) (-1995.024) (-1994.641) -- 0:03:52
730000 -- (-1996.662) (-2003.541) [-1978.921] (-2016.733) * (-1989.057) (-2001.321) (-2024.642) [-1983.799] -- 0:03:51
Average standard deviation of split frequencies: 0.024614
731000 -- [-1984.432] (-1996.688) (-1986.151) (-2020.204) * (-1999.794) [-1997.817] (-2013.555) (-2003.426) -- 0:03:50
732000 -- (-1993.841) (-1988.037) (-1992.938) [-2000.178] * (-1994.158) (-1993.697) [-1993.680] (-1982.436) -- 0:03:49
733000 -- (-1998.109) (-2000.990) [-1990.079] (-2008.910) * (-1989.446) (-2007.961) [-1990.034] (-2001.943) -- 0:03:48
734000 -- [-1996.431] (-1992.160) (-1985.279) (-1996.861) * (-2003.731) (-2008.751) [-1988.373] (-1990.886) -- 0:03:47
735000 -- [-1983.027] (-2000.529) (-1996.673) (-1989.189) * (-1995.155) (-2002.748) (-2000.781) [-2008.505] -- 0:03:46
Average standard deviation of split frequencies: 0.024378
736000 -- [-1987.456] (-1983.174) (-1994.456) (-2004.921) * [-1993.305] (-1995.523) (-2007.026) (-2017.174) -- 0:03:45
737000 -- [-1982.735] (-2002.910) (-1997.474) (-1990.844) * [-1989.807] (-1999.494) (-1998.488) (-2007.517) -- 0:03:45
738000 -- (-1989.108) [-1991.806] (-1986.708) (-1987.147) * (-2001.390) [-1990.383] (-2006.480) (-2009.661) -- 0:03:44
739000 -- (-1982.415) (-2005.089) [-1989.080] (-2002.799) * (-2010.947) (-2006.500) [-1991.194] (-1996.588) -- 0:03:43
740000 -- [-1989.631] (-1993.075) (-1997.513) (-1997.604) * (-1984.374) (-2015.942) [-1979.221] (-1995.440) -- 0:03:42
Average standard deviation of split frequencies: 0.023858
741000 -- [-1983.774] (-1998.332) (-1979.099) (-2001.832) * (-1996.398) [-2000.184] (-2004.908) (-1992.772) -- 0:03:41
742000 -- (-2001.389) [-1989.172] (-2002.436) (-1994.730) * (-1989.849) [-1985.752] (-2007.786) (-1996.078) -- 0:03:40
743000 -- (-1993.745) (-1990.848) [-1989.660] (-1993.967) * (-1993.795) [-1993.498] (-2000.578) (-2004.260) -- 0:03:39
744000 -- [-1989.404] (-2014.171) (-1992.055) (-2002.150) * (-2003.129) (-2000.347) [-1993.494] (-1992.519) -- 0:03:38
745000 -- (-2003.422) (-2002.941) [-2000.025] (-1994.870) * (-1995.612) [-1998.423] (-1991.490) (-2006.278) -- 0:03:37
Average standard deviation of split frequencies: 0.024338
746000 -- (-2003.894) (-2002.041) (-1991.444) [-1992.112] * (-2008.510) (-1990.238) (-1998.898) [-1997.750] -- 0:03:36
747000 -- (-1990.482) (-1993.812) (-1994.418) [-1999.444] * [-1998.545] (-1990.219) (-2004.372) (-1996.719) -- 0:03:36
748000 -- (-1999.489) (-2005.029) (-2001.951) [-1994.303] * (-1990.441) (-2005.684) (-1982.672) [-1990.724] -- 0:03:34
749000 -- [-1995.412] (-1984.231) (-2005.220) (-1985.541) * (-2005.151) (-1991.947) (-2007.753) [-1995.148] -- 0:03:34
750000 -- [-1998.282] (-1998.763) (-2020.001) (-1993.259) * [-1993.590] (-1988.524) (-1996.837) (-1995.998) -- 0:03:33
Average standard deviation of split frequencies: 0.024054
751000 -- [-1998.266] (-2000.512) (-2013.332) (-1993.220) * (-1999.683) (-1986.762) (-1987.753) [-1990.843] -- 0:03:32
752000 -- (-1995.838) (-1990.978) [-1987.562] (-1998.836) * (-1997.360) (-1997.414) [-1987.543] (-1999.876) -- 0:03:31
753000 -- (-1999.004) (-1991.310) (-2004.410) [-1991.186] * (-2007.354) [-1988.531] (-1996.206) (-2000.312) -- 0:03:30
754000 -- (-1995.890) (-2002.900) (-1998.778) [-1994.422] * [-1989.424] (-1991.551) (-1994.583) (-1999.380) -- 0:03:29
755000 -- (-1995.570) (-2006.098) (-1991.027) [-1992.203] * (-1981.662) [-1990.929] (-1999.853) (-1987.779) -- 0:03:28
Average standard deviation of split frequencies: 0.023789
756000 -- (-2006.532) (-1988.305) (-2017.410) [-1991.779] * [-1980.203] (-1996.475) (-1997.923) (-2010.393) -- 0:03:27
757000 -- (-1995.071) [-1985.501] (-2009.658) (-1991.984) * (-2008.165) [-1990.707] (-1989.330) (-2005.673) -- 0:03:27
758000 -- (-1999.815) (-1985.996) (-1991.291) [-1985.377] * (-1993.014) (-1982.644) (-2001.909) [-1985.332] -- 0:03:25
759000 -- (-2000.078) [-1992.251] (-2005.418) (-1990.092) * (-2008.217) (-1992.541) (-2004.338) [-1991.292] -- 0:03:25
760000 -- (-1990.187) (-2023.220) [-2003.285] (-1990.533) * [-1990.778] (-1991.577) (-2000.594) (-2019.826) -- 0:03:24
Average standard deviation of split frequencies: 0.023700
761000 -- (-1991.521) (-1994.574) [-1992.305] (-1995.316) * (-1990.602) [-1987.060] (-1993.015) (-2005.800) -- 0:03:23
762000 -- (-1989.242) (-2009.450) [-2006.594] (-2014.748) * (-1988.946) [-1983.760] (-2000.628) (-2002.476) -- 0:03:22
763000 -- (-1996.745) [-1993.129] (-2013.251) (-1999.210) * (-1993.244) (-1993.776) [-1997.727] (-1987.719) -- 0:03:21
764000 -- (-2008.052) (-1994.079) [-1989.646] (-2002.752) * (-1987.660) (-1991.178) [-1992.578] (-1985.304) -- 0:03:20
765000 -- (-2004.771) [-2000.243] (-2012.056) (-1989.120) * [-1987.962] (-2004.625) (-1997.178) (-2004.599) -- 0:03:19
Average standard deviation of split frequencies: 0.024188
766000 -- (-2009.660) (-2001.807) [-1988.887] (-1990.870) * (-2008.843) [-1991.517] (-2007.605) (-1991.844) -- 0:03:18
767000 -- (-1999.842) (-1997.444) [-1986.191] (-1988.171) * [-1993.224] (-2006.293) (-2000.273) (-1997.893) -- 0:03:18
768000 -- (-1994.439) (-2000.789) (-1983.470) [-1983.550] * [-2000.996] (-1999.625) (-1988.529) (-2006.158) -- 0:03:16
769000 -- [-1990.929] (-1991.734) (-2005.376) (-1996.002) * (-2018.789) (-1998.563) [-1990.702] (-1996.781) -- 0:03:16
770000 -- (-2003.836) [-1979.498] (-2001.829) (-1999.307) * [-1993.553] (-1991.874) (-2004.516) (-2006.407) -- 0:03:15
Average standard deviation of split frequencies: 0.024226
771000 -- (-1997.048) (-1999.208) (-2002.472) [-1991.016] * [-1984.529] (-1991.656) (-1997.944) (-1999.272) -- 0:03:14
772000 -- (-1993.340) (-1994.983) (-2016.981) [-1987.334] * (-1999.523) (-1998.712) [-1992.648] (-2002.471) -- 0:03:13
773000 -- [-1993.142] (-1998.456) (-2016.409) (-1985.324) * [-1991.768] (-1996.388) (-1986.682) (-2003.826) -- 0:03:12
774000 -- (-1993.136) (-2001.076) (-1999.245) [-1999.289] * (-1995.449) (-1990.796) [-1985.234] (-1994.084) -- 0:03:11
775000 -- (-2000.945) (-2001.758) [-1993.203] (-2006.359) * [-1996.482] (-2000.606) (-1994.462) (-1990.951) -- 0:03:10
Average standard deviation of split frequencies: 0.023821
776000 -- (-1998.036) (-2007.312) [-1980.243] (-2012.494) * [-1981.215] (-1990.153) (-1994.925) (-1993.368) -- 0:03:09
777000 -- (-2012.661) (-2005.713) [-1987.298] (-1997.611) * [-1997.440] (-1998.253) (-2000.171) (-2009.772) -- 0:03:09
778000 -- (-2005.126) [-2000.395] (-1993.085) (-1996.124) * (-2014.022) (-1998.657) [-1992.259] (-2003.438) -- 0:03:08
779000 -- [-1986.623] (-2002.514) (-1987.044) (-1999.013) * [-1979.307] (-2000.194) (-1997.642) (-1994.509) -- 0:03:07
780000 -- (-2004.293) (-2015.637) (-1996.259) [-1988.669] * (-1989.971) (-1991.353) (-1990.497) [-1986.463] -- 0:03:06
Average standard deviation of split frequencies: 0.024264
781000 -- (-2009.560) (-1998.117) [-1986.428] (-2008.942) * [-1987.099] (-2007.133) (-1988.351) (-2010.282) -- 0:03:05
782000 -- [-1986.568] (-1985.532) (-2005.434) (-1990.197) * (-1997.464) (-2007.945) [-1983.357] (-1991.871) -- 0:03:04
783000 -- (-2000.654) [-1984.370] (-2019.282) (-2000.563) * (-1986.625) (-1999.018) [-1996.169] (-1999.442) -- 0:03:03
784000 -- (-1989.747) [-1985.044] (-2001.098) (-2009.206) * (-1996.613) [-1986.869] (-1994.421) (-1996.079) -- 0:03:02
785000 -- [-1985.467] (-1997.067) (-2003.340) (-2000.417) * (-1994.874) (-1987.506) (-2007.936) [-1990.061] -- 0:03:01
Average standard deviation of split frequencies: 0.024626
786000 -- (-1993.568) [-1993.559] (-2014.474) (-1995.780) * (-1999.223) (-2002.284) [-1988.670] (-1999.909) -- 0:03:01
787000 -- [-1987.683] (-1988.754) (-2011.004) (-1995.260) * (-2019.571) [-2003.550] (-1998.734) (-1998.411) -- 0:03:00
788000 -- (-2004.175) (-1975.135) (-1997.997) [-1986.947] * (-1991.902) (-2000.519) [-1983.457] (-1990.011) -- 0:02:59
789000 -- (-1995.622) (-1999.165) (-1995.507) [-1982.899] * (-1994.154) (-2002.538) (-1990.486) [-1998.324] -- 0:02:58
790000 -- [-1994.653] (-1990.418) (-2006.117) (-1997.964) * (-1982.533) (-1996.039) (-2005.295) [-2005.650] -- 0:02:57
Average standard deviation of split frequencies: 0.024607
791000 -- [-1994.327] (-1987.877) (-1998.904) (-2000.653) * [-1989.811] (-1997.204) (-2010.025) (-1996.243) -- 0:02:56
792000 -- (-1996.393) (-1992.076) (-2005.246) [-1990.838] * (-1997.392) (-1990.362) (-1988.807) [-1986.262] -- 0:02:55
793000 -- (-1999.434) (-1995.476) (-1982.321) [-1988.684] * (-1993.334) (-2003.976) [-1992.453] (-1993.381) -- 0:02:54
794000 -- (-2010.908) (-1992.598) (-1983.862) [-1983.153] * (-2005.598) (-1998.947) (-1990.642) [-1990.862] -- 0:02:53
795000 -- (-2007.519) (-1992.902) [-1984.785] (-1990.559) * (-1997.491) (-2007.160) (-1979.875) [-1977.410] -- 0:02:53
Average standard deviation of split frequencies: 0.024927
796000 -- (-1998.539) [-1987.288] (-1991.681) (-2011.685) * [-1978.438] (-2009.576) (-1986.203) (-1985.565) -- 0:02:52
797000 -- (-1983.068) (-1999.163) [-1989.419] (-1989.059) * (-1995.100) (-2000.841) (-2001.075) [-1983.984] -- 0:02:51
798000 -- [-1996.947] (-1996.553) (-1994.664) (-2013.514) * [-1982.878] (-1998.518) (-1991.000) (-1998.314) -- 0:02:50
799000 -- (-2002.297) (-2003.056) [-1987.563] (-2004.099) * (-1986.883) [-1989.347] (-1993.234) (-2015.718) -- 0:02:49
800000 -- (-1994.334) (-1988.728) (-1993.454) [-2004.556] * (-2000.288) (-1988.692) (-2006.322) [-1996.801] -- 0:02:48
Average standard deviation of split frequencies: 0.024978
801000 -- (-2012.759) [-1983.559] (-1989.867) (-2014.593) * [-1990.354] (-1986.544) (-2009.977) (-1996.846) -- 0:02:47
802000 -- (-1994.407) [-1994.584] (-2005.171) (-1995.786) * [-1985.512] (-1996.995) (-2008.973) (-1990.843) -- 0:02:46
803000 -- (-1997.248) [-1985.435] (-2005.027) (-1998.297) * (-2008.489) (-2001.027) (-2005.594) [-1988.530] -- 0:02:45
804000 -- [-1985.293] (-2018.910) (-1999.027) (-1991.580) * (-2000.285) [-2003.855] (-2008.967) (-1999.311) -- 0:02:45
805000 -- (-1996.236) [-1985.308] (-2008.781) (-1992.724) * [-1992.645] (-2003.139) (-2009.857) (-1984.493) -- 0:02:44
Average standard deviation of split frequencies: 0.024635
806000 -- (-2004.978) [-1989.937] (-2001.582) (-1993.849) * (-2007.412) (-2002.091) [-1992.098] (-1985.539) -- 0:02:43
807000 -- (-2000.022) (-1991.968) (-1988.021) [-1983.527] * [-1987.950] (-1995.317) (-2003.494) (-1990.887) -- 0:02:42
808000 -- [-2001.475] (-1995.224) (-2006.012) (-2002.764) * (-1998.794) (-2004.185) [-1985.330] (-1997.567) -- 0:02:41
809000 -- (-2012.358) (-1999.601) (-1992.057) [-1979.332] * (-2001.401) [-1995.624] (-1995.768) (-2008.969) -- 0:02:40
810000 -- [-1989.793] (-2007.636) (-2003.044) (-1995.971) * [-1986.206] (-1993.680) (-2007.745) (-1995.913) -- 0:02:39
Average standard deviation of split frequencies: 0.024599
811000 -- [-1987.178] (-1991.205) (-2005.983) (-2002.540) * (-1994.945) [-1995.225] (-2010.362) (-1989.727) -- 0:02:38
812000 -- (-1982.021) (-2001.493) [-1991.847] (-1999.332) * (-1997.370) (-2000.782) (-1995.474) [-1995.461] -- 0:02:38
813000 -- (-1992.748) (-1993.385) (-2001.723) [-2001.004] * (-1988.756) (-2000.335) (-2000.203) [-1994.947] -- 0:02:37
814000 -- (-2016.722) [-1982.536] (-1998.700) (-2003.981) * (-1989.818) [-1989.848] (-2005.844) (-1995.829) -- 0:02:36
815000 -- (-2003.193) [-1995.912] (-1988.657) (-2015.327) * [-1981.281] (-2000.071) (-2003.424) (-2002.582) -- 0:02:35
Average standard deviation of split frequencies: 0.024351
816000 -- (-2011.800) [-1988.837] (-1990.922) (-2013.580) * (-1991.417) (-2004.221) [-1990.201] (-1988.131) -- 0:02:34
817000 -- (-1994.840) (-1993.502) [-1983.889] (-2005.758) * [-1989.274] (-2005.938) (-1987.093) (-2005.824) -- 0:02:33
818000 -- [-1989.902] (-2001.532) (-2005.778) (-1986.919) * [-1975.501] (-2005.419) (-1997.602) (-1994.352) -- 0:02:32
819000 -- (-1998.196) (-1991.032) [-1989.159] (-1986.022) * (-1997.036) (-1999.023) [-1989.457] (-2004.966) -- 0:02:32
820000 -- (-1979.542) (-2000.035) (-1989.165) [-1992.600] * (-2003.428) (-2002.010) (-1996.016) [-1995.165] -- 0:02:31
Average standard deviation of split frequencies: 0.024334
821000 -- (-1985.614) (-2002.231) [-2002.936] (-1991.917) * (-2000.645) (-2007.495) (-1996.107) [-1993.247] -- 0:02:30
822000 -- (-1995.240) (-2006.325) (-2008.908) [-1987.392] * [-1986.808] (-1988.356) (-2014.954) (-1993.426) -- 0:02:29
823000 -- (-2004.102) [-1990.736] (-2002.845) (-1993.969) * (-1987.844) [-1986.338] (-2014.813) (-1998.091) -- 0:02:28
824000 -- (-1985.151) [-1989.196] (-1992.925) (-2007.231) * [-1995.251] (-1993.510) (-1998.691) (-1993.887) -- 0:02:27
825000 -- (-1990.785) (-1993.700) [-1987.869] (-1993.411) * (-1997.578) [-1992.829] (-1997.370) (-2000.927) -- 0:02:26
Average standard deviation of split frequencies: 0.024039
826000 -- (-1988.782) (-2003.514) [-1984.161] (-2008.106) * [-1982.912] (-1992.063) (-1983.688) (-2010.831) -- 0:02:25
827000 -- [-1991.307] (-2010.948) (-1999.060) (-2005.886) * (-1986.460) (-1985.941) [-1991.366] (-1997.340) -- 0:02:24
828000 -- (-1989.105) (-1998.686) (-2021.798) [-1990.217] * (-1993.529) [-1989.424] (-2001.464) (-2015.806) -- 0:02:24
829000 -- (-1987.558) (-1997.517) (-2026.931) [-1989.541] * (-1992.925) (-1997.632) [-1987.163] (-2001.838) -- 0:02:23
830000 -- (-2008.502) (-1987.431) (-2001.600) [-1991.789] * (-2001.644) (-2006.078) [-1995.897] (-2006.389) -- 0:02:22
Average standard deviation of split frequencies: 0.023749
831000 -- (-1997.972) [-1986.897] (-2010.104) (-2002.150) * (-1992.028) (-1988.184) (-2005.161) [-2002.409] -- 0:02:21
832000 -- [-1991.898] (-1990.007) (-2009.573) (-2002.036) * (-1994.305) (-1998.028) (-1985.150) [-1983.341] -- 0:02:20
833000 -- [-1991.996] (-2000.563) (-1994.859) (-1981.813) * (-1992.243) (-1989.588) (-2007.616) [-1985.770] -- 0:02:19
834000 -- [-1998.282] (-1995.598) (-1988.967) (-1990.242) * (-2005.191) (-2002.596) (-2005.484) [-1979.944] -- 0:02:18
835000 -- [-1983.279] (-1993.614) (-1996.609) (-1986.507) * (-2009.558) (-2013.034) [-1986.909] (-1997.217) -- 0:02:18
Average standard deviation of split frequencies: 0.022777
836000 -- [-1994.808] (-1998.189) (-2005.425) (-1991.737) * (-1987.433) (-2007.542) (-1993.542) [-1988.160] -- 0:02:17
837000 -- (-1994.911) (-1995.782) [-1990.984] (-1997.848) * (-2005.268) (-2006.281) [-1997.388] (-1989.078) -- 0:02:16
838000 -- [-1982.164] (-1992.471) (-1996.860) (-1986.205) * (-1995.123) [-1986.715] (-2011.490) (-1993.458) -- 0:02:15
839000 -- (-1990.975) (-1999.914) (-1998.658) [-1989.303] * (-2001.456) (-2009.207) (-1999.008) [-1998.955] -- 0:02:15
840000 -- (-1999.085) [-1997.411] (-2004.846) (-1999.678) * [-1998.776] (-1992.304) (-1998.194) (-2004.704) -- 0:02:14
Average standard deviation of split frequencies: 0.022277
841000 -- (-2007.915) (-1988.869) (-2004.896) [-1991.466] * (-1995.679) (-1997.834) (-2000.382) [-1994.951] -- 0:02:13
842000 -- (-1988.315) (-1994.614) (-1993.727) [-1984.159] * [-1990.060] (-1993.585) (-2000.991) (-1997.609) -- 0:02:12
843000 -- (-1993.791) [-2004.395] (-1992.921) (-1990.784) * (-1998.700) [-1988.888] (-2008.661) (-1998.072) -- 0:02:11
844000 -- [-1992.458] (-1996.510) (-2004.871) (-1998.510) * (-1998.041) [-1987.190] (-2012.545) (-2003.933) -- 0:02:11
845000 -- (-1998.090) (-2008.662) [-1990.949] (-2009.352) * (-2007.710) [-1999.630] (-1993.964) (-1991.860) -- 0:02:10
Average standard deviation of split frequencies: 0.022103
846000 -- (-1986.749) [-1980.351] (-1999.018) (-2000.799) * (-2003.797) (-1991.746) [-1996.987] (-2013.101) -- 0:02:09
847000 -- (-1986.615) [-1979.089] (-2004.664) (-1997.712) * (-1996.033) (-1991.610) [-1997.515] (-2009.580) -- 0:02:08
848000 -- (-1998.868) [-1988.166] (-1994.664) (-1998.314) * (-1990.040) (-2005.276) (-1995.468) [-1988.998] -- 0:02:07
849000 -- (-2016.586) (-1988.069) [-1993.892] (-2002.967) * [-1989.256] (-1997.334) (-1993.843) (-2013.780) -- 0:02:07
850000 -- (-1994.839) [-1987.730] (-2004.648) (-2009.453) * (-2017.016) [-1990.931] (-1994.340) (-1999.087) -- 0:02:06
Average standard deviation of split frequencies: 0.021797
851000 -- (-1988.023) [-1998.108] (-1996.501) (-1988.053) * (-2002.517) (-2004.021) (-1997.187) [-1986.962] -- 0:02:05
852000 -- (-2011.662) (-1994.286) [-1990.219] (-1983.295) * [-1985.693] (-2003.361) (-1986.617) (-1986.468) -- 0:02:04
853000 -- [-1991.196] (-1993.126) (-1996.140) (-2000.376) * (-1987.519) (-2000.996) [-1991.592] (-2011.046) -- 0:02:04
854000 -- [-1982.160] (-1992.377) (-2012.262) (-2000.043) * (-1992.953) (-1992.900) [-1985.215] (-1995.668) -- 0:02:03
855000 -- (-1999.648) [-1990.118] (-2003.061) (-1993.062) * [-1994.554] (-2003.181) (-1988.665) (-1995.920) -- 0:02:02
Average standard deviation of split frequencies: 0.021411
856000 -- (-1998.062) [-1984.851] (-1996.672) (-1990.056) * (-2007.029) (-1996.864) (-1984.104) [-1995.834] -- 0:02:01
857000 -- [-1983.798] (-1988.379) (-1993.980) (-1988.138) * [-1982.300] (-2002.255) (-1980.383) (-1997.555) -- 0:02:00
858000 -- (-2001.017) (-2008.014) (-1997.218) [-1990.238] * [-1980.948] (-1996.185) (-1983.434) (-2002.456) -- 0:01:59
859000 -- (-1995.842) (-1993.692) [-1989.447] (-1993.962) * (-2008.930) (-2001.134) [-1995.503] (-2000.378) -- 0:01:59
860000 -- (-2008.018) [-1998.423] (-2001.086) (-1996.346) * (-1999.416) (-2000.724) [-1980.229] (-1996.061) -- 0:01:58
Average standard deviation of split frequencies: 0.021079
861000 -- [-1992.811] (-1995.535) (-2011.953) (-1995.703) * (-1995.706) (-2000.963) [-1995.054] (-2004.165) -- 0:01:57
862000 -- [-1982.261] (-2010.249) (-1998.677) (-1992.326) * [-1986.106] (-2010.867) (-2002.316) (-2001.296) -- 0:01:56
863000 -- (-1993.384) [-1982.084] (-1997.438) (-1988.926) * (-1989.591) (-2004.859) [-1995.998] (-2020.741) -- 0:01:56
864000 -- (-1983.237) (-1997.881) (-1995.339) [-1999.077] * (-1998.888) (-2003.265) [-1988.897] (-1993.443) -- 0:01:55
865000 -- [-1990.578] (-2007.536) (-1999.560) (-2000.537) * (-1985.909) (-1992.656) (-1992.584) [-2001.276] -- 0:01:54
Average standard deviation of split frequencies: 0.020520
866000 -- (-2001.123) (-1995.703) (-1987.831) [-1994.213] * (-1991.521) (-1997.429) [-1991.783] (-1999.865) -- 0:01:53
867000 -- (-1993.382) (-2000.620) [-1985.301] (-1993.681) * (-1992.972) (-1984.630) [-1970.013] (-1989.558) -- 0:01:52
868000 -- (-1998.785) [-1985.045] (-1998.588) (-1989.678) * (-1997.267) (-1994.503) (-1984.554) [-1992.617] -- 0:01:51
869000 -- (-1987.658) (-1993.167) (-1995.213) [-1981.309] * (-2010.665) [-1990.631] (-1992.637) (-2007.678) -- 0:01:51
870000 -- (-1990.810) [-1983.640] (-2011.098) (-2002.220) * (-2005.518) (-1994.020) (-1994.775) [-1999.495] -- 0:01:50
Average standard deviation of split frequencies: 0.020148
871000 -- [-1989.138] (-1992.420) (-2004.992) (-1986.665) * [-1992.563] (-1988.394) (-1996.370) (-1993.286) -- 0:01:49
872000 -- (-2007.456) [-1983.912] (-1993.911) (-2002.010) * (-1993.025) [-1979.525] (-1982.424) (-1989.456) -- 0:01:48
873000 -- (-1986.406) (-1996.132) (-1993.628) [-1999.407] * [-1994.291] (-1984.247) (-1997.257) (-2005.620) -- 0:01:47
874000 -- (-1984.436) [-1986.614] (-2002.144) (-2015.757) * (-2016.689) [-1990.426] (-1990.032) (-1998.960) -- 0:01:47
875000 -- (-1987.614) (-1992.620) (-1997.948) [-1990.423] * (-2002.989) [-1986.160] (-1994.666) (-1990.946) -- 0:01:46
Average standard deviation of split frequencies: 0.019112
876000 -- (-1993.655) [-1995.474] (-2005.758) (-1991.076) * (-1983.170) (-1997.372) [-1992.721] (-1995.300) -- 0:01:45
877000 -- (-1998.124) [-1993.760] (-2005.206) (-1992.349) * (-1998.647) [-1986.619] (-2013.779) (-2002.123) -- 0:01:44
878000 -- (-1999.831) [-1995.233] (-1989.750) (-1992.594) * [-1994.142] (-1996.966) (-1987.291) (-2020.413) -- 0:01:43
879000 -- (-2012.683) (-1987.385) (-1994.747) [-1986.677] * (-1983.060) (-2002.110) [-1990.654] (-2019.120) -- 0:01:42
880000 -- (-2000.993) (-1987.489) (-2002.506) [-2001.044] * [-1980.391] (-2006.505) (-1995.370) (-2002.338) -- 0:01:42
Average standard deviation of split frequencies: 0.018540
881000 -- (-1993.823) (-1992.852) (-2005.083) [-1991.609] * (-1992.783) (-1995.537) [-1989.953] (-1981.739) -- 0:01:41
882000 -- (-1999.931) (-1992.940) [-1992.339] (-1989.429) * (-2000.363) (-1992.727) [-1989.297] (-1987.114) -- 0:01:40
883000 -- (-2004.875) [-1987.179] (-1994.346) (-2009.701) * (-1999.763) (-1986.417) [-1988.626] (-2002.798) -- 0:01:39
884000 -- [-1989.815] (-2000.143) (-2007.515) (-1998.083) * (-1997.959) (-1993.561) [-1988.892] (-2000.803) -- 0:01:38
885000 -- (-1985.275) (-1997.797) (-2011.875) [-1994.407] * (-1984.638) (-2002.581) (-2003.316) [-1982.077] -- 0:01:37
Average standard deviation of split frequencies: 0.018751
886000 -- (-2007.450) (-2011.072) (-1994.182) [-1997.589] * (-1995.696) (-2006.802) (-1994.962) [-2005.119] -- 0:01:36
887000 -- (-2000.487) (-1991.300) (-1991.371) [-1995.750] * (-1997.348) (-2012.859) (-1995.671) [-1995.589] -- 0:01:36
888000 -- (-1984.701) [-1995.759] (-2006.646) (-1999.021) * (-2002.503) (-2011.281) (-1992.795) [-1988.279] -- 0:01:35
889000 -- (-2006.766) (-2002.756) [-1990.478] (-2003.384) * [-2004.932] (-2007.403) (-1993.041) (-1999.735) -- 0:01:34
890000 -- (-2026.840) (-1995.728) (-1990.310) [-1985.491] * (-1988.555) (-2007.282) [-1992.499] (-1998.609) -- 0:01:33
Average standard deviation of split frequencies: 0.019166
891000 -- (-1991.682) (-1988.664) (-2007.170) [-1987.362] * (-1989.657) (-2009.760) [-1993.905] (-1998.228) -- 0:01:32
892000 -- (-1998.086) (-2007.287) (-1995.022) [-1984.678] * [-1995.521] (-2000.336) (-1988.741) (-1988.707) -- 0:01:31
893000 -- [-1987.383] (-2001.111) (-1994.218) (-1982.500) * (-1993.405) (-2002.744) [-1991.651] (-2000.758) -- 0:01:30
894000 -- (-2006.714) (-1994.380) [-1982.778] (-1992.120) * (-2004.645) (-1993.951) [-1999.604] (-1998.363) -- 0:01:29
895000 -- (-1993.925) (-1997.375) [-1988.029] (-1990.277) * (-1987.380) (-1994.502) [-1993.885] (-2000.723) -- 0:01:29
Average standard deviation of split frequencies: 0.019243
896000 -- [-1988.667] (-1997.875) (-2023.373) (-2005.273) * (-1999.632) [-1984.316] (-2002.998) (-2006.176) -- 0:01:28
897000 -- [-1995.137] (-2016.563) (-2004.435) (-1999.442) * [-1997.120] (-1986.218) (-1996.150) (-1993.576) -- 0:01:27
898000 -- (-1994.822) (-1995.259) [-1997.804] (-1995.312) * (-1994.124) [-1992.369] (-1999.736) (-1994.740) -- 0:01:26
899000 -- (-2003.597) (-2007.147) (-1998.958) [-1987.461] * (-1996.584) (-2008.794) [-1993.238] (-1998.191) -- 0:01:25
900000 -- [-1982.831] (-1993.083) (-1995.049) (-1992.562) * (-1995.988) (-2006.013) (-1994.841) [-1995.505] -- 0:01:24
Average standard deviation of split frequencies: 0.019096
901000 -- [-1981.612] (-1991.062) (-1993.577) (-2000.664) * (-2005.638) (-2002.848) (-1991.281) [-1987.043] -- 0:01:23
902000 -- (-1993.429) (-1988.971) [-1990.297] (-2017.520) * (-2001.075) (-2007.147) [-1998.131] (-1993.003) -- 0:01:23
903000 -- [-1994.322] (-1984.480) (-1997.594) (-2003.259) * (-2002.266) (-1995.262) [-1985.318] (-2012.778) -- 0:01:22
904000 -- (-2005.575) (-1981.939) [-1997.932] (-2012.592) * [-1997.805] (-2001.502) (-1991.568) (-2016.510) -- 0:01:21
905000 -- (-1991.467) (-1990.518) [-1987.387] (-2005.878) * [-1988.491] (-1998.324) (-1989.018) (-1997.061) -- 0:01:20
Average standard deviation of split frequencies: 0.019693
906000 -- [-1987.061] (-1995.064) (-2000.526) (-2000.257) * (-1995.782) [-1993.574] (-1992.941) (-2012.759) -- 0:01:19
907000 -- (-1992.399) (-2002.218) [-1996.272] (-2002.590) * (-1996.994) (-1993.143) [-1993.187] (-1999.392) -- 0:01:18
908000 -- (-2005.952) (-1991.592) (-2010.016) [-1986.897] * [-1996.026] (-1999.454) (-1988.442) (-1990.247) -- 0:01:18
909000 -- (-2000.464) (-1992.585) (-2014.979) [-1983.438] * (-2000.275) (-1999.284) (-2003.353) [-1985.572] -- 0:01:17
910000 -- [-1994.492] (-1990.324) (-1998.370) (-2005.891) * (-1994.234) (-2003.576) [-1985.091] (-2002.310) -- 0:01:16
Average standard deviation of split frequencies: 0.019545
911000 -- (-1999.201) (-2005.560) (-1988.164) [-1988.210] * (-2000.253) (-1995.868) (-1986.101) [-1986.017] -- 0:01:15
912000 -- (-2012.510) [-1998.990] (-1993.245) (-1998.022) * (-2001.799) (-2001.379) [-1983.304] (-1995.099) -- 0:01:14
913000 -- (-1992.810) (-1997.567) [-1981.992] (-2004.000) * (-1991.508) (-1992.594) [-1982.428] (-1996.241) -- 0:01:14
914000 -- [-1993.372] (-1997.808) (-1990.504) (-1994.022) * (-1995.715) (-1992.484) [-1985.279] (-1999.803) -- 0:01:13
915000 -- [-1987.134] (-2008.300) (-2002.184) (-1992.993) * (-1997.456) (-2001.076) (-1992.556) [-2005.153] -- 0:01:12
Average standard deviation of split frequencies: 0.020024
916000 -- (-2003.606) [-2002.430] (-2001.050) (-1998.249) * (-1996.177) (-2004.197) [-1984.676] (-2005.082) -- 0:01:11
917000 -- (-1999.788) [-1994.689] (-2010.429) (-1996.141) * [-1993.937] (-1999.172) (-1995.464) (-1988.676) -- 0:01:10
918000 -- (-2013.937) (-2008.941) (-2004.679) [-1985.939] * [-1996.930] (-1995.524) (-1989.639) (-2013.555) -- 0:01:09
919000 -- (-1982.383) (-2006.764) [-1989.279] (-1981.617) * (-1986.466) (-1993.879) (-1999.244) [-1992.066] -- 0:01:09
920000 -- (-1984.459) [-1991.483] (-1996.956) (-1990.282) * (-1996.511) [-1996.851] (-2001.699) (-1989.797) -- 0:01:08
Average standard deviation of split frequencies: 0.020636
921000 -- (-1987.110) (-1995.577) (-2011.542) [-1998.726] * (-2001.445) [-1985.860] (-2001.825) (-1998.876) -- 0:01:07
922000 -- (-1995.974) [-1997.387] (-2000.949) (-1989.455) * (-1993.575) (-2003.326) [-1996.389] (-2007.841) -- 0:01:06
923000 -- [-1991.434] (-1998.417) (-1988.728) (-2001.228) * [-1983.723] (-1994.898) (-1991.141) (-2001.501) -- 0:01:05
924000 -- [-1995.046] (-1988.097) (-1993.682) (-2001.068) * (-1995.967) [-1980.870] (-2002.143) (-1982.438) -- 0:01:04
925000 -- (-1986.108) (-1999.601) (-2001.828) [-1990.430] * [-2001.856] (-1999.541) (-1990.909) (-1997.235) -- 0:01:04
Average standard deviation of split frequencies: 0.020564
926000 -- (-1982.826) [-1985.109] (-1996.463) (-1996.610) * [-1998.916] (-1988.939) (-1997.463) (-1983.946) -- 0:01:03
927000 -- (-1983.789) [-1991.545] (-1990.137) (-2016.709) * (-1997.372) [-1984.784] (-1995.555) (-1997.508) -- 0:01:02
928000 -- [-1981.153] (-1989.433) (-1987.052) (-1995.175) * (-1997.877) (-1985.014) [-1990.479] (-1993.598) -- 0:01:01
929000 -- (-1992.577) (-1994.002) (-1998.698) [-1986.617] * (-1991.657) (-1989.688) [-1992.884] (-2007.270) -- 0:01:00
930000 -- (-2016.358) (-2004.021) (-2009.546) [-1989.176] * (-1998.658) (-1991.320) [-1991.194] (-2003.907) -- 0:00:59
Average standard deviation of split frequencies: 0.020460
931000 -- (-1999.040) [-1987.221] (-1997.682) (-1996.333) * (-2001.290) (-1991.105) (-1994.978) [-1990.928] -- 0:00:59
932000 -- (-2007.779) (-2007.111) (-1988.247) [-1990.620] * [-1998.476] (-1983.838) (-2001.797) (-2004.184) -- 0:00:58
933000 -- [-1996.452] (-2011.770) (-2000.305) (-1995.034) * (-2000.619) (-2008.885) [-1988.969] (-1998.277) -- 0:00:57
934000 -- (-1988.627) (-2001.579) (-1985.556) [-1982.266] * (-1996.739) (-2021.029) [-1995.681] (-1987.803) -- 0:00:56
935000 -- (-1982.064) [-1978.280] (-2000.063) (-1986.775) * [-1994.085] (-1994.457) (-1997.903) (-1995.382) -- 0:00:55
Average standard deviation of split frequencies: 0.020359
936000 -- (-1994.625) (-1994.631) (-2008.703) [-1995.665] * [-1999.125] (-2016.185) (-2003.419) (-1994.050) -- 0:00:54
937000 -- (-1990.899) (-2004.457) (-2000.333) [-1993.710] * (-1994.661) (-2012.719) [-1981.347] (-2007.755) -- 0:00:54
938000 -- (-1995.540) (-2008.628) (-1988.340) [-1994.812] * [-1975.282] (-1990.957) (-1988.468) (-2009.341) -- 0:00:53
939000 -- (-1981.378) (-1993.342) (-1986.936) [-2000.259] * [-1988.611] (-1996.072) (-2011.625) (-1996.977) -- 0:00:52
940000 -- (-1983.054) (-1995.091) [-1993.868] (-2003.305) * [-1994.862] (-1997.864) (-2007.942) (-2008.301) -- 0:00:51
Average standard deviation of split frequencies: 0.020076
941000 -- (-1990.061) (-1997.962) (-1988.768) [-1997.224] * [-1994.808] (-1986.090) (-1987.470) (-1996.652) -- 0:00:50
942000 -- (-2003.118) (-1984.149) [-1993.896] (-2002.574) * (-1995.552) (-1989.111) [-1997.691] (-1994.677) -- 0:00:49
943000 -- (-1999.633) (-1994.313) (-2014.419) [-1986.786] * [-1986.260] (-1995.003) (-1994.395) (-2002.218) -- 0:00:48
944000 -- (-1995.605) [-1995.584] (-2004.148) (-2000.361) * (-2002.160) (-1992.412) [-1991.986] (-1985.394) -- 0:00:48
945000 -- [-1988.356] (-2005.370) (-2002.807) (-2003.344) * (-1990.313) (-1988.011) [-1996.455] (-1994.137) -- 0:00:47
Average standard deviation of split frequencies: 0.020068
946000 -- (-1990.286) (-2009.379) (-2004.805) [-1998.513] * (-1997.269) (-1997.305) [-1987.779] (-2008.198) -- 0:00:46
947000 -- [-1983.897] (-2003.853) (-1997.722) (-1997.847) * (-1996.882) [-1982.346] (-1989.970) (-1983.629) -- 0:00:45
948000 -- (-1987.314) [-1994.245] (-2004.712) (-1993.721) * (-1995.847) (-1996.011) (-1999.388) [-1989.847] -- 0:00:44
949000 -- (-2001.756) (-1991.265) (-1995.450) [-1988.247] * (-1997.257) [-1988.488] (-1990.145) (-2012.228) -- 0:00:43
950000 -- [-1992.336] (-1993.710) (-1986.263) (-1992.351) * [-1991.206] (-1989.018) (-1992.268) (-1993.827) -- 0:00:43
Average standard deviation of split frequencies: 0.020331
951000 -- (-1993.862) (-2002.921) (-1991.386) [-1994.341] * [-1995.175] (-1996.149) (-1999.601) (-2005.398) -- 0:00:42
952000 -- [-1994.423] (-1993.358) (-1992.944) (-1997.145) * (-1984.186) (-1996.079) (-2004.088) [-1986.730] -- 0:00:41
953000 -- (-1998.933) (-1996.116) (-1990.705) [-1981.748] * (-1990.595) (-1985.332) [-1990.296] (-2004.397) -- 0:00:40
954000 -- (-1993.763) (-1999.173) [-1985.153] (-1994.696) * (-1996.881) [-1981.345] (-2025.911) (-2002.872) -- 0:00:39
955000 -- (-2000.346) (-1993.059) (-1999.495) [-1989.745] * (-2007.073) [-1992.525] (-2008.073) (-1985.439) -- 0:00:38
Average standard deviation of split frequencies: 0.020262
956000 -- (-1983.745) [-1979.280] (-1983.503) (-2004.733) * (-2002.610) (-1984.563) [-1992.557] (-1999.196) -- 0:00:37
957000 -- (-2011.747) (-1989.783) [-1987.152] (-2014.042) * (-1998.283) (-1999.111) (-2001.444) [-1987.324] -- 0:00:37
958000 -- (-2003.066) [-1988.205] (-1999.336) (-2000.996) * (-1995.077) (-1995.107) (-1993.407) [-1994.356] -- 0:00:36
959000 -- (-1996.447) [-1988.126] (-2002.803) (-1997.101) * (-1999.114) (-1995.742) (-1994.913) [-1985.061] -- 0:00:35
960000 -- (-2009.023) (-1988.463) [-1989.318] (-1998.579) * (-1989.810) [-1989.721] (-2002.119) (-1993.389) -- 0:00:34
Average standard deviation of split frequencies: 0.020223
961000 -- [-2000.464] (-2002.592) (-1997.568) (-2001.330) * (-1993.029) (-1996.867) [-1999.603] (-2005.209) -- 0:00:33
962000 -- (-1983.498) [-1996.744] (-2003.380) (-1999.138) * [-1997.726] (-1990.216) (-2010.788) (-2009.929) -- 0:00:32
963000 -- (-1996.400) (-1984.160) [-1980.586] (-1994.538) * (-1999.379) [-1976.713] (-1989.428) (-1997.285) -- 0:00:31
964000 -- (-2006.408) [-1994.077] (-2000.571) (-2005.397) * (-2009.125) (-1985.453) [-1998.957] (-2004.112) -- 0:00:31
965000 -- (-1995.581) [-1989.161] (-1983.786) (-1996.343) * [-1982.108] (-1993.010) (-2005.772) (-1992.243) -- 0:00:30
Average standard deviation of split frequencies: 0.019890
966000 -- (-2001.111) [-1989.075] (-1991.407) (-2007.619) * (-1990.408) (-2001.591) (-2001.143) [-1997.965] -- 0:00:29
967000 -- (-1995.674) [-1989.082] (-1993.661) (-1983.284) * [-1992.751] (-1987.161) (-1990.148) (-2008.458) -- 0:00:28
968000 -- [-1995.106] (-2000.274) (-1995.539) (-1987.931) * (-1998.064) (-1990.996) [-1990.323] (-1990.717) -- 0:00:27
969000 -- (-1999.071) (-1992.128) (-1993.925) [-1981.558] * (-2000.389) (-1999.436) [-1985.059] (-2008.808) -- 0:00:26
970000 -- (-1995.048) [-1997.844] (-1994.310) (-2002.679) * (-1992.088) (-1991.246) (-2004.228) [-1993.187] -- 0:00:25
Average standard deviation of split frequencies: 0.019661
971000 -- (-1992.493) (-1989.062) (-1993.277) [-1991.319] * [-1989.877] (-1986.365) (-1996.693) (-1989.533) -- 0:00:25
972000 -- (-2014.374) (-1991.834) (-1994.340) [-1982.964] * [-1993.799] (-2001.269) (-1995.543) (-1997.489) -- 0:00:24
973000 -- (-2004.964) (-2017.156) [-1991.338] (-1997.470) * (-1999.560) [-1989.549] (-2012.583) (-2002.294) -- 0:00:23
974000 -- (-1999.355) [-1991.937] (-1991.358) (-1991.413) * [-1983.692] (-2001.824) (-2009.086) (-1992.754) -- 0:00:22
975000 -- [-1995.598] (-1996.640) (-2002.217) (-2009.160) * [-1988.850] (-2000.995) (-1991.255) (-1997.177) -- 0:00:21
Average standard deviation of split frequencies: 0.019598
976000 -- [-1992.552] (-1994.887) (-1997.183) (-2021.600) * [-1993.016] (-2005.336) (-1985.507) (-1990.245) -- 0:00:20
977000 -- [-1983.890] (-1998.563) (-1996.204) (-1995.506) * (-2000.060) (-2002.825) [-1982.093] (-1983.678) -- 0:00:19
978000 -- (-1997.204) (-1992.404) [-1988.356] (-2000.494) * (-1993.933) (-2014.207) [-1989.712] (-1996.458) -- 0:00:19
979000 -- (-1995.827) (-2020.987) [-1987.162] (-1993.802) * (-1997.483) [-1989.775] (-1999.197) (-1995.813) -- 0:00:18
980000 -- (-1998.089) (-1999.996) (-1994.179) [-1980.668] * (-2010.029) (-2005.614) (-1982.933) [-1991.177] -- 0:00:17
Average standard deviation of split frequencies: 0.019548
981000 -- (-1995.704) (-1994.501) (-1992.444) [-1986.782] * (-1996.195) (-1994.153) (-1989.524) [-1989.620] -- 0:00:16
982000 -- (-2001.312) (-1997.448) (-1989.108) [-1988.353] * [-1985.790] (-1994.169) (-1997.651) (-1991.232) -- 0:00:15
983000 -- (-2005.624) (-1994.802) (-2017.576) [-1997.785] * [-2001.964] (-1985.910) (-2005.323) (-2001.100) -- 0:00:14
984000 -- (-2002.679) (-1997.902) (-1998.297) [-2004.809] * (-1997.432) (-2001.783) [-1986.657] (-1992.272) -- 0:00:13
985000 -- (-1991.861) (-1999.522) (-1993.122) [-1986.177] * [-2004.324] (-1999.898) (-2001.782) (-1992.779) -- 0:00:13
Average standard deviation of split frequencies: 0.019080
986000 -- (-2005.511) [-1987.760] (-1990.909) (-1997.432) * (-2004.361) (-2007.900) (-2000.171) [-1994.469] -- 0:00:12
987000 -- (-1999.697) [-1993.049] (-1991.032) (-1998.537) * (-2002.568) (-1995.325) [-1990.404] (-2006.717) -- 0:00:11
988000 -- (-2004.393) [-1984.933] (-1991.128) (-1998.810) * [-1992.094] (-1985.296) (-1996.435) (-1993.040) -- 0:00:10
989000 -- (-1989.178) (-1985.939) (-1999.326) [-1993.319] * (-2004.340) [-1987.178] (-1992.684) (-2012.127) -- 0:00:09
990000 -- (-1991.334) [-1981.530] (-1991.429) (-2010.445) * (-1996.320) (-1997.290) [-1991.311] (-1994.158) -- 0:00:08
Average standard deviation of split frequencies: 0.019049
991000 -- [-1990.582] (-1978.724) (-1998.951) (-1988.749) * (-1989.674) (-2003.743) [-1992.325] (-1992.907) -- 0:00:07
992000 -- [-1995.137] (-1991.662) (-2010.443) (-1992.963) * (-2005.768) (-2001.354) [-1985.361] (-1999.819) -- 0:00:06
993000 -- (-2003.107) (-2001.342) (-1979.582) [-2003.978] * (-1998.164) (-2008.658) (-1992.488) [-1995.602] -- 0:00:06
994000 -- (-2008.118) (-1997.890) [-1987.650] (-2000.207) * (-2007.939) [-2000.419] (-1991.628) (-1994.146) -- 0:00:05
995000 -- (-1990.860) [-1995.720] (-1996.993) (-2006.792) * (-2003.465) (-1993.164) [-1992.954] (-2011.221) -- 0:00:04
Average standard deviation of split frequencies: 0.018888
996000 -- (-2000.891) [-1988.730] (-2001.257) (-1997.251) * (-2006.380) (-2007.614) [-1990.686] (-1987.343) -- 0:00:03
997000 -- (-1990.479) [-1985.933] (-2009.989) (-2006.044) * (-1985.182) [-1995.051] (-2000.750) (-2005.822) -- 0:00:02
998000 -- (-1996.886) (-1989.217) (-2006.292) [-2002.438] * (-1999.759) [-1989.819] (-1997.121) (-2000.132) -- 0:00:01
999000 -- [-2006.738] (-2005.720) (-1990.079) (-2004.871) * [-1992.659] (-1983.606) (-1998.272) (-1995.899) -- 0:00:00
1000000 -- (-1990.995) (-1994.652) [-1988.530] (-1996.963) * [-1990.890] (-1992.351) (-1994.851) (-1993.808) -- 0:00:00
Average standard deviation of split frequencies: 0.018711
Analysis completed in 14 mins 31 seconds
Analysis used 870.50 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -1968.92
Likelihood of best state for "cold" chain of run 2 was -1970.10
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
56.4 % ( 48 %) Dirichlet(Revmat{all})
73.3 % ( 61 %) Slider(Revmat{all})
25.2 % ( 25 %) Dirichlet(Pi{all})
27.4 % ( 37 %) Slider(Pi{all})
73.1 % ( 37 %) Multiplier(Alpha{1,2})
62.6 % ( 23 %) Multiplier(Alpha{3})
65.4 % ( 40 %) Slider(Pinvar{all})
54.4 % ( 49 %) ExtSPR(Tau{all},V{all})
45.1 % ( 43 %) ExtTBR(Tau{all},V{all})
59.9 % ( 68 %) NNI(Tau{all},V{all})
55.5 % ( 61 %) ParsSPR(Tau{all},V{all})
27.4 % ( 28 %) Multiplier(V{all})
69.4 % ( 65 %) Nodeslider(V{all})
25.9 % ( 23 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
56.0 % ( 50 %) Dirichlet(Revmat{all})
71.5 % ( 63 %) Slider(Revmat{all})
25.6 % ( 22 %) Dirichlet(Pi{all})
27.5 % ( 26 %) Slider(Pi{all})
72.5 % ( 47 %) Multiplier(Alpha{1,2})
62.6 % ( 33 %) Multiplier(Alpha{3})
65.5 % ( 36 %) Slider(Pinvar{all})
54.6 % ( 57 %) ExtSPR(Tau{all},V{all})
45.1 % ( 45 %) ExtTBR(Tau{all},V{all})
59.5 % ( 67 %) NNI(Tau{all},V{all})
55.6 % ( 58 %) ParsSPR(Tau{all},V{all})
27.4 % ( 24 %) Multiplier(V{all})
69.7 % ( 65 %) Nodeslider(V{all})
25.9 % ( 19 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.49 0.19 0.05
2 | 167035 0.52 0.21
3 | 167073 165528 0.54
4 | 166888 166418 167058
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.50 0.19 0.06
2 | 166547 0.52 0.21
3 | 166962 166938 0.55
4 | 165773 166593 167187
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -1987.18
| 1 |
| 1 1 |
| 1 2 2 1 2 1 121 1 1 1 |
|2 1 2111 2 1 2 1 2 2 2 2 |
|12 *2 2 2 1 1 122 1 111 1 12 |
| 21 2 1 22 1 2 1 12 22 22 *1 2 2 *1 |
| 2 2 2 2 2 2 1 1 2 1 1 22 |
| 11 2 2 1 2 1 1 2 1 21|
| 1 1 12 2 2 22 1 2|
| 11 2 1 21 1 2 |
| 1 21 |
| 2 |
| |
| 2 |
| 1 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -1995.12
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1979.62 -2005.41
2 -1977.28 -2004.43
--------------------------------------
TOTAL -1977.88 -2005.04
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.110170 0.000264 0.081013 0.144492 0.109419 1301.54 1344.95 1.000
r(A<->C){all} 0.034502 0.000439 0.001374 0.075541 0.030472 795.21 873.60 1.000
r(A<->G){all} 0.207047 0.002343 0.118096 0.302398 0.203635 759.69 800.57 1.003
r(A<->T){all} 0.043985 0.000347 0.011201 0.080956 0.041569 757.83 833.82 1.000
r(C<->G){all} 0.040611 0.000598 0.001919 0.086256 0.036345 706.68 767.34 1.000
r(C<->T){all} 0.592246 0.003551 0.484503 0.711460 0.593104 534.91 653.19 1.002
r(G<->T){all} 0.081609 0.000787 0.030493 0.135182 0.078374 693.23 803.88 1.000
pi(A){all} 0.266863 0.000188 0.241633 0.294891 0.266647 1194.93 1268.35 1.001
pi(C){all} 0.180152 0.000136 0.157817 0.201506 0.179876 1151.22 1205.06 1.001
pi(G){all} 0.225925 0.000163 0.200594 0.250634 0.225873 1014.69 1068.63 1.000
pi(T){all} 0.327061 0.000204 0.300087 0.354861 0.326824 1027.53 1073.86 1.000
alpha{1,2} 0.124747 0.022632 0.000022 0.331568 0.093349 695.46 978.02 1.000
alpha{3} 2.230032 1.711795 0.275308 4.829825 1.954520 695.54 928.03 1.000
pinvar{all} 0.593504 0.009839 0.397407 0.767350 0.608379 589.66 778.49 1.001
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C321
2 -- C66
3 -- C313
4 -- C257
5 -- C327
6 -- C72
7 -- C532
8 -- C230
9 -- C78
10 -- C305
11 -- C212
12 -- C105
13 -- C316
14 -- C549
15 -- C561
16 -- C370
17 -- C181
18 -- C112
19 -- C601
20 -- C139
21 -- C423
22 -- C32
23 -- C453
24 -- C597
25 -- C388
26 -- C130
27 -- C427
28 -- C233
29 -- C136
30 -- C29
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
------------------------------------
1 -- .*****************************
2 -- .*............................
3 -- ..*...........................
4 -- ...*..........................
5 -- ....*.........................
6 -- .....*........................
7 -- ......*.......................
8 -- .......*......................
9 -- ........*.....................
10 -- .........*....................
11 -- ..........*...................
12 -- ...........*..................
13 -- ............*.................
14 -- .............*................
15 -- ..............*...............
16 -- ...............*..............
17 -- ................*.............
18 -- .................*............
19 -- ..................*...........
20 -- ...................*..........
21 -- ....................*.........
22 -- .....................*........
23 -- ......................*.......
24 -- .......................*......
25 -- ........................*.....
26 -- .........................*....
27 -- ..........................*...
28 -- ...........................*..
29 -- ............................*.
30 -- .............................*
31 -- .***.**.**************.*.*****
32 -- .***.*******************.*****
33 -- .*.................*.*......*.
34 -- ..*..*..*.*......*.......*....
35 -- .***.**.********.*****.*.*****
36 -- .....*....*...................
37 -- ........*........*............
38 -- .*..........*......*.*......*.
39 -- ..*......................*....
40 -- .*.*..*..*.*****..****.*..****
41 -- .*....*..*.*****..****.*..****
42 -- .....*..*.*......*............
43 -- .......*..............*.......
44 -- .***********************.*****
45 -- ....*...................*.....
46 -- .***.**.****************.*****
47 -- .***.*****************.*.*****
48 -- .***.*************************
49 -- ..*.....*........*.......*....
50 -- ..*..*....*..............*....
51 -- ...................*.*......*.
52 -- .....................*......*.
53 -- ...................*.*........
54 -- ...................*........*.
55 -- ..**.**.****.***.**.*..*.***.*
56 -- .*.................*..........
57 -- .*.................*.*........
58 -- .*.................*........*.
59 -- .*..........................*.
60 -- ..**.*..*.*......*.......*....
61 -- .*...................*........
62 -- .*...................*......*.
------------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
31 3002 1.000000 0.000000 1.000000 1.000000 2
32 3002 1.000000 0.000000 1.000000 1.000000 2
33 3002 1.000000 0.000000 1.000000 1.000000 2
34 3002 1.000000 0.000000 1.000000 1.000000 2
35 3001 0.999667 0.000471 0.999334 1.000000 2
36 2924 0.974017 0.004711 0.970686 0.977348 2
37 2795 0.931046 0.006124 0.926716 0.935376 2
38 2718 0.905396 0.023555 0.888741 0.922052 2
39 2522 0.840107 0.037687 0.813458 0.866755 2
40 2411 0.803131 0.069250 0.754164 0.852099 2
41 2397 0.798468 0.066424 0.751499 0.845436 2
42 1276 0.425050 0.035803 0.399734 0.450366 2
43 1030 0.343105 0.017901 0.330446 0.355763 2
44 1030 0.343105 0.000942 0.342438 0.343771 2
45 999 0.332778 0.012719 0.323784 0.341772 2
46 997 0.332112 0.012719 0.323118 0.341106 2
47 975 0.324783 0.030621 0.303131 0.346436 2
48 973 0.324117 0.013662 0.314457 0.333777 2
49 803 0.267488 0.010835 0.259827 0.275150 2
50 768 0.255829 0.021670 0.240506 0.271153 2
51 756 0.251832 0.009422 0.245170 0.258494 2
52 629 0.209527 0.001413 0.208528 0.210526 2
53 616 0.205197 0.013191 0.195869 0.214524 2
54 609 0.202865 0.007066 0.197868 0.207861 2
55 588 0.195869 0.067837 0.147901 0.243837 2
56 585 0.194870 0.010835 0.187209 0.202532 2
57 583 0.194204 0.017430 0.181879 0.206529 2
58 571 0.190207 0.018373 0.177215 0.203198 2
59 564 0.187875 0.011306 0.179880 0.195869 2
60 552 0.183877 0.061242 0.140573 0.227182 2
61 548 0.182545 0.003769 0.179880 0.185210 2
62 543 0.180879 0.011777 0.172552 0.189207 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.001463 0.000001 0.000003 0.003481 0.001215 1.000 2
length{all}[2] 0.008354 0.000008 0.003410 0.013807 0.008043 1.000 2
length{all}[3] 0.000730 0.000000 0.000000 0.002154 0.000531 1.000 2
length{all}[4] 0.004684 0.000004 0.001165 0.008754 0.004378 1.000 2
length{all}[5] 0.000729 0.000001 0.000000 0.002211 0.000498 1.001 2
length{all}[6] 0.006308 0.000006 0.002195 0.011074 0.005979 1.000 2
length{all}[7] 0.000706 0.000001 0.000001 0.002122 0.000486 1.000 2
length{all}[8] 0.000748 0.000001 0.000000 0.002329 0.000514 1.000 2
length{all}[9] 0.000780 0.000001 0.000001 0.002319 0.000547 1.000 2
length{all}[10] 0.000748 0.000001 0.000000 0.002221 0.000507 1.000 2
length{all}[11] 0.001595 0.000001 0.000052 0.003868 0.001304 1.000 2
length{all}[12] 0.000743 0.000001 0.000000 0.002217 0.000512 1.000 2
length{all}[13] 0.001340 0.000001 0.000000 0.003446 0.001080 1.001 2
length{all}[14] 0.000736 0.000001 0.000000 0.002264 0.000494 1.000 2
length{all}[15] 0.001465 0.000001 0.000009 0.003523 0.001233 1.000 2
length{all}[16] 0.001423 0.000001 0.000047 0.003495 0.001169 1.000 2
length{all}[17] 0.013678 0.000015 0.006513 0.021514 0.013195 1.000 2
length{all}[18] 0.003042 0.000002 0.000571 0.006043 0.002799 1.000 2
length{all}[19] 0.000726 0.000001 0.000000 0.002167 0.000501 1.000 2
length{all}[20] 0.001466 0.000001 0.000018 0.003484 0.001225 1.000 2
length{all}[21] 0.000722 0.000001 0.000000 0.002174 0.000503 1.000 2
length{all}[22] 0.000710 0.000001 0.000000 0.002125 0.000490 1.000 2
length{all}[23] 0.000732 0.000001 0.000000 0.002179 0.000501 1.000 2
length{all}[24] 0.000747 0.000001 0.000000 0.002241 0.000512 1.002 2
length{all}[25] 0.000733 0.000001 0.000001 0.002119 0.000510 1.000 2
length{all}[26] 0.000746 0.000001 0.000000 0.002289 0.000506 1.000 2
length{all}[27] 0.000726 0.000001 0.000000 0.002184 0.000499 1.000 2
length{all}[28] 0.000753 0.000001 0.000000 0.002246 0.000520 1.000 2
length{all}[29] 0.000723 0.000000 0.000000 0.002113 0.000515 1.000 2
length{all}[30] 0.000745 0.000001 0.000001 0.002330 0.000521 1.000 2
length{all}[31] 0.007194 0.000008 0.002401 0.012468 0.006912 1.001 2
length{all}[32] 0.002904 0.000002 0.000486 0.005897 0.002637 1.000 2
length{all}[33] 0.003849 0.000003 0.000942 0.007421 0.003547 1.001 2
length{all}[34] 0.004442 0.000006 0.000690 0.009191 0.003926 1.005 2
length{all}[35] 0.005616 0.000006 0.001381 0.010433 0.005281 1.001 2
length{all}[36] 0.002152 0.000002 0.000083 0.004683 0.001899 1.000 2
length{all}[37] 0.001475 0.000001 0.000017 0.003549 0.001223 1.000 2
length{all}[38] 0.004137 0.000005 0.000138 0.008156 0.003892 1.007 2
length{all}[39] 0.001416 0.000001 0.000000 0.003477 0.001173 1.000 2
length{all}[40] 0.003769 0.000003 0.000671 0.007407 0.003477 1.000 2
length{all}[41] 0.003003 0.000002 0.000311 0.005977 0.002787 1.000 2
length{all}[42] 0.001069 0.000001 0.000000 0.002975 0.000774 1.001 2
length{all}[43] 0.000787 0.000001 0.000001 0.002472 0.000540 0.999 2
length{all}[44] 0.000711 0.000000 0.000001 0.002104 0.000515 0.999 2
length{all}[45] 0.000772 0.000001 0.000000 0.002308 0.000525 0.999 2
length{all}[46] 0.000758 0.000001 0.000000 0.002280 0.000536 0.999 2
length{all}[47] 0.000752 0.000001 0.000001 0.002289 0.000485 0.999 2
length{all}[48] 0.000703 0.000001 0.000000 0.002209 0.000507 0.999 2
length{all}[49] 0.000817 0.000001 0.000000 0.002535 0.000525 0.999 2
length{all}[50] 0.000791 0.000001 0.000002 0.002339 0.000568 0.999 2
length{all}[51] 0.000906 0.000001 0.000001 0.002688 0.000640 1.001 2
length{all}[52] 0.000708 0.000001 0.000001 0.002043 0.000494 0.999 2
length{all}[53] 0.000738 0.000001 0.000000 0.002186 0.000519 1.002 2
length{all}[54] 0.000799 0.000001 0.000001 0.002486 0.000518 0.999 2
length{all}[55] 0.004267 0.000004 0.001036 0.008021 0.003943 1.005 2
length{all}[56] 0.000837 0.000001 0.000001 0.002504 0.000575 1.002 2
length{all}[57] 0.000744 0.000001 0.000000 0.002200 0.000520 1.001 2
length{all}[58] 0.000693 0.000001 0.000000 0.002196 0.000457 0.999 2
length{all}[59] 0.000739 0.000001 0.000000 0.002088 0.000544 1.000 2
length{all}[60] 0.002351 0.000002 0.000201 0.005285 0.001999 1.002 2
length{all}[61] 0.000761 0.000001 0.000000 0.002269 0.000531 0.999 2
length{all}[62] 0.000786 0.000001 0.000000 0.002155 0.000569 1.000 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.018711
Maximum standard deviation of split frequencies = 0.069250
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.007
Clade credibility values:
/--------------------------------------------------------------------- C321 (1)
|
|--------------------------------------------------------------------- C327 (5)
|
|--------------------------------------------------------------------- C388 (25)
|
| /--------- C66 (2)
| |
| |--------- C139 (20)
| /--100--+
| | |--------- C32 (22)
| | |
| /---91---+ \--------- C136 (29)
| | |
| | \----------------- C316 (13)
| |
| |-------------------------- C532 (7)
| |
| |-------------------------- C305 (10)
| |
| |-------------------------- C105 (12)
| |
| |-------------------------- C549 (14)
| |
| |-------------------------- C561 (15)
| /---80--+
| | |-------------------------- C370 (16)
+ | |
| | |-------------------------- C601 (19)
| | |
| | |-------------------------- C423 (21)
| | |
| | |-------------------------- C597 (24)
| /---80---+ |
| | | |-------------------------- C427 (27)
| | | |
| | | |-------------------------- C233 (28)
| | | |
| | | \-------------------------- C29 (30)
| | |
| /---100--+ \---------------------------------- C257 (4)
| | |
| | | /--------- C313 (3)
| | | /---84--+
| | | | \--------- C130 (26)
| | | |
| | | | /--------- C72 (6)
| /--100--+ \-----------100-----------+---97--+
| | | | \--------- C212 (11)
| | | |
| | | | /--------- C78 (9)
| | | \---93--+
| | | \--------- C112 (18)
\---100--+ |
| \---------------------------------------------------- C181 (17)
|
|------------------------------------------------------------ C230 (8)
|
\------------------------------------------------------------ C453 (23)
Phylogram (based on average branch lengths):
/-- C321 (1)
|
|- C327 (5)
|
|- C388 (25)
|
| /---------------- C66 (2)
| |
| |--- C139 (20)
| /-----+
| | |- C32 (22)
| | |
| /-------+ \- C136 (29)
| | |
| | \-- C316 (13)
| |
| |- C532 (7)
| |
| |- C305 (10)
| |
| |- C105 (12)
| |
| |- C549 (14)
| |
| |-- C561 (15)
| /----+
| | |-- C370 (16)
+ | |
| | |- C601 (19)
| | |
| | |- C423 (21)
| | |
| | |- C597 (24)
| /------+ |
| | | |- C427 (27)
| | | |
| | | |- C233 (28)
| | | |
| | | \- C29 (30)
| | |
| /---------+ \-------- C257 (4)
| | |
| | | /- C313 (3)
| | | /--+
| | | | \- C130 (26)
| | | |
| | | | /------------ C72 (6)
| /-------------+ \------+---+
| | | | \--- C212 (11)
| | | |
| | | | /- C78 (9)
| | | \--+
| | | \----- C112 (18)
\----+ |
| \------------------------- C181 (17)
|
|- C230 (8)
|
\- C453 (23)
|--------| 0.005 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3002 trees sampled):
50 % credible set contains 1501 trees
90 % credible set contains 2702 trees
95 % credible set contains 2852 trees
99 % credible set contains 2972 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Thu Nov 17 16:36:34 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/LZW_nsp12_VIPR_ALG4_672096717_18715_19731_1_2012_02_China_Unknown_PEDV.result--
-- Starting log on Fri Nov 18 05:42:44 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/LZW_nsp12_VIPR_ALG4_672096717_18715_19731_1_2012_02_China_Unknown_PEDV.result/original_alignment/codeml,LZW_nsp12_VIPR_ALG4_672096717_18715_19731_1_2012_02_China_Unknown_PEDV.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C549 1017 sites
reading seq# 2 C370 1017 sites
reading seq# 3 C561 1017 sites
reading seq# 4 C212 1017 sites
reading seq# 5 C112 1017 sites
reading seq# 6 C181 1017 sites
reading seq# 7 C601 1017 sites
reading seq# 8 C316 1017 sites
reading seq# 9 C233 1017 sites
reading seq#10 C139 1017 sites
reading seq#11 C66 1017 sites
reading seq#12 C321 1017 sites
reading seq#13 C313 1017 sites
reading seq#14 C423 1017 sites
reading seq#15 C32 1017 sites
reading seq#16 C327 1017 sites
reading seq#17 C257 1017 sites
reading seq#18 C72 1017 sites
reading seq#19 C597 1017 sites
reading seq#20 C453 1017 sites
reading seq#21 C230 1017 sites
reading seq#22 C532 1017 sites
reading seq#23 C130 1017 sites
reading seq#24 C427 1017 sites
reading seq#25 C388 1017 sites
reading seq#26 C305 1017 sites
reading seq#27 C78 1017 sites
reading seq#28 C29 1017 sites
reading seq#29 C136 1017 sites
reading seq#30 C105 1017 sitesns = 30 ls = 1017
Reading sequences, sequential format..
Reading seq # 1: C549
Reading seq # 2: C370
Reading seq # 3: C561
Reading seq # 4: C212
Reading seq # 5: C112
Reading seq # 6: C181
Reading seq # 7: C601
Reading seq # 8: C316
Reading seq # 9: C233
Reading seq #10: C139
Reading seq #11: C66
Reading seq #12: C321
Reading seq #13: C313
Reading seq #14: C423
Reading seq #15: C32
Reading seq #16: C327
Reading seq #17: C257
Reading seq #18: C72
Reading seq #19: C597
Reading seq #20: C453
Reading seq #21: C230
Reading seq #22: C532
Reading seq #23: C130
Reading seq #24: C427
Reading seq #25: C388
Reading seq #26: C305
Reading seq #27: C78
Reading seq #28: C29
Reading seq #29: C136
Reading seq #30: C105
Sequences read..
Counting site patterns.. 0:00
Compressing, 117 patterns at 339 / 339 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 117 patterns at 339 / 339 sites (100.0%), 0:00
Counting codons..
3480 bytes for distance
114192 bytes for conP
10296 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(12, 16, 25, (((((((11, 10, 15, 29), 8), 22, 26, 30, 1, 3, 2, 7, 14, 19, 24, 9, 28), 17), ((13, 23), (18, 4), (27, 5))), 6), 21, 20)); MP score: 87
685152 bytes for conP, adjusted
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
36
0.059333 0.090607 0.048674 0.051230 0.047012 0.107392 0.092537 0.089223 0.089516 0.012374 0.067467 0.025111 0.017135 0.086325 0.019749 0.039614 0.026992 0.011805 0.076707 0.104798 0.012508 0.061236 0.032763 0.010971 0.094719 0.040357 0.061557 0.013799 0.072630 0.010483 0.058843 0.062566 0.084815 0.088007 0.095823 0.045536 0.049417 0.094596 0.037625 0.063331 0.024768 0.300000 0.885970 0.333007
ntime & nrate & np: 41 2 44
Bounds (np=44):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 14.980156
np = 44
lnL0 = -2514.716608
Iterating by ming2
Initial: fx= 2514.716608
x= 0.05933 0.09061 0.04867 0.05123 0.04701 0.10739 0.09254 0.08922 0.08952 0.01237 0.06747 0.02511 0.01713 0.08633 0.01975 0.03961 0.02699 0.01180 0.07671 0.10480 0.01251 0.06124 0.03276 0.01097 0.09472 0.04036 0.06156 0.01380 0.07263 0.01048 0.05884 0.06257 0.08481 0.08801 0.09582 0.04554 0.04942 0.09460 0.03763 0.06333 0.02477 0.30000 0.88597 0.33301
1 h-m-p 0.0000 0.0000 1705.4184 ++ 2408.311815 m 0.0000 49 | 1/44
2 h-m-p 0.0000 0.0000 11819.5239 ++ 2401.203391 m 0.0000 96 | 2/44
3 h-m-p 0.0000 0.0000 12007.5461 ++ 2362.359111 m 0.0000 143 | 3/44
4 h-m-p 0.0000 0.0000 44086.6691 ++ 2309.286389 m 0.0000 190 | 4/44
5 h-m-p 0.0000 0.0000 15178.8897 ++ 2293.707534 m 0.0000 237 | 5/44
6 h-m-p 0.0000 0.0000 6653.2717 ++ 2255.409825 m 0.0000 284 | 6/44
7 h-m-p 0.0000 0.0000 5578.8788 ++ 2211.790426 m 0.0000 331 | 7/44
8 h-m-p 0.0000 0.0000 6786.9819 ++ 2207.568561 m 0.0000 378 | 8/44
9 h-m-p 0.0000 0.0000 49154.6380 ++ 2166.729133 m 0.0000 425 | 9/44
10 h-m-p 0.0000 0.0000 10290.6038 ++ 2159.253562 m 0.0000 472 | 10/44
11 h-m-p 0.0000 0.0000 58864.1103 ++ 2125.044873 m 0.0000 519 | 11/44
12 h-m-p 0.0000 0.0000 81618.4777 ++ 2117.334776 m 0.0000 566 | 12/44
13 h-m-p 0.0000 0.0000 10767.4625 ++ 2116.342823 m 0.0000 613 | 13/44
14 h-m-p 0.0000 0.0000 6717.5952 ++ 2113.103010 m 0.0000 660 | 14/44
15 h-m-p 0.0000 0.0000 6590.1860 ++ 2112.992561 m 0.0000 707 | 15/44
16 h-m-p 0.0000 0.0000 12655.7413 ++ 2085.392145 m 0.0000 754 | 16/44
17 h-m-p 0.0000 0.0000 5123.1654 ++ 2071.262428 m 0.0000 801 | 17/44
18 h-m-p 0.0000 0.0000 2482.4174 ++ 2067.266708 m 0.0000 848 | 18/44
19 h-m-p 0.0000 0.0000 1143.9243 ++ 2062.691894 m 0.0000 895 | 19/44
20 h-m-p 0.0000 0.0001 462.6984 ++ 2032.117132 m 0.0001 942 | 19/44
21 h-m-p 0.0000 0.0000 1864.2811 +YYYYYC 2029.684172 5 0.0000 995 | 19/44
22 h-m-p 0.0000 0.0000 723.1850 +YYYYCCC 2021.989959 6 0.0000 1051 | 19/44
23 h-m-p 0.0000 0.0001 433.6157 +YYYYC 2015.200107 4 0.0001 1103 | 19/44
24 h-m-p 0.0000 0.0000 981.2284 +YYCCCC 2011.449604 5 0.0000 1159 | 19/44
25 h-m-p 0.0000 0.0000 481.2402 +YYCCCC 2010.218376 5 0.0000 1215 | 19/44
26 h-m-p 0.0000 0.0001 359.4336 +YYYC 2005.203976 3 0.0001 1266 | 19/44
27 h-m-p 0.0000 0.0000 1980.8745 YCYCCC 2003.466215 5 0.0000 1321 | 19/44
28 h-m-p 0.0000 0.0000 745.3959 ++ 1998.955094 m 0.0000 1368 | 19/44
29 h-m-p 0.0000 0.0000 1954.1563
h-m-p: 0.00000000e+00 0.00000000e+00 1.95415629e+03 1998.955094
.. | 19/44
30 h-m-p 0.0000 0.0000 5184.0451 YCYYCCC 1994.986483 6 0.0000 1468 | 19/44
31 h-m-p 0.0000 0.0000 814.1848 +YYYYCCCCC 1986.257215 8 0.0000 1528 | 19/44
32 h-m-p 0.0000 0.0000 949.7247 +YYYYYCCCCC 1982.079219 9 0.0000 1589 | 19/44
33 h-m-p 0.0000 0.0000 1097.7819 +YYCYYCC 1972.781788 6 0.0000 1646 | 19/44
34 h-m-p 0.0000 0.0000 3598.6802 +YYYCCC 1970.238872 5 0.0000 1701 | 19/44
35 h-m-p 0.0000 0.0000 1514.9615 YCYCCC 1967.264732 5 0.0000 1756 | 19/44
36 h-m-p 0.0000 0.0000 1078.8750 +YYCCCC 1964.034468 5 0.0000 1812 | 19/44
37 h-m-p 0.0001 0.0006 302.0001 +CCCYC 1947.548084 4 0.0005 1868 | 19/44
38 h-m-p 0.0000 0.0000 6827.9386 +YCYCC 1944.969414 4 0.0000 1922 | 19/44
39 h-m-p 0.0000 0.0001 364.2101 CCC 1944.542745 2 0.0000 1973 | 19/44
40 h-m-p 0.0000 0.0001 346.0434 +YCYCCC 1943.504134 5 0.0000 2029 | 19/44
41 h-m-p 0.0000 0.0001 1772.6100 +YYYYYCCCC 1939.536841 8 0.0000 2088 | 19/44
42 h-m-p 0.0000 0.0000 1389.5650 +YYCCC 1938.023084 4 0.0000 2142 | 19/44
43 h-m-p 0.0000 0.0003 1164.4704 +YCYC 1934.128318 3 0.0001 2194 | 19/44
44 h-m-p 0.0000 0.0001 931.2869 +YYCCC 1932.344619 4 0.0000 2248 | 19/44
45 h-m-p 0.0000 0.0002 413.2583 CCCC 1930.742268 3 0.0001 2301 | 19/44
46 h-m-p 0.0000 0.0001 344.5886 CYC 1930.379794 2 0.0000 2351 | 19/44
47 h-m-p 0.0000 0.0002 259.0574 YCYCCC 1929.378557 5 0.0001 2406 | 19/44
48 h-m-p 0.0000 0.0002 1624.0773 +YYCC 1926.557360 3 0.0001 2458 | 19/44
49 h-m-p 0.0001 0.0003 805.9762 +YYCCCC 1921.518872 5 0.0002 2514 | 19/44
50 h-m-p 0.0000 0.0002 235.4631 CCCC 1921.179319 3 0.0001 2567 | 19/44
51 h-m-p 0.0003 0.0017 33.3085 -YC 1921.162019 1 0.0000 2616 | 19/44
52 h-m-p 0.0001 0.0044 10.4582 YC 1921.158441 1 0.0001 2664 | 19/44
53 h-m-p 0.0006 0.0518 1.0608 YC 1921.146066 1 0.0012 2712 | 19/44
54 h-m-p 0.0002 0.0797 9.5534 +++YCCC 1917.279995 3 0.0194 2767 | 19/44
55 h-m-p 0.0002 0.0008 511.7398 YCYCCC 1911.835401 5 0.0004 2822 | 19/44
56 h-m-p 0.5813 2.9067 0.3319 YCCCCC 1906.109189 5 1.4441 2878 | 19/44
57 h-m-p 0.4511 2.2557 0.3635 +YYCCC 1902.515103 4 1.4210 2957 | 19/44
58 h-m-p 0.9394 4.6972 0.3469 CCCC 1900.499414 3 1.3732 3035 | 19/44
59 h-m-p 0.8851 4.4256 0.3969 YCCC 1899.068780 3 1.5628 3112 | 19/44
60 h-m-p 1.0801 5.4006 0.3533 CCCC 1898.261916 3 1.5810 3190 | 19/44
61 h-m-p 1.2074 6.0371 0.2549 CYC 1897.987085 2 1.2617 3265 | 19/44
62 h-m-p 1.6000 8.0000 0.1826 CYC 1897.871220 2 1.5214 3340 | 19/44
63 h-m-p 1.6000 8.0000 0.1137 CC 1897.817020 1 1.3362 3414 | 19/44
64 h-m-p 1.6000 8.0000 0.0377 CCC 1897.771619 2 1.7454 3490 | 19/44
65 h-m-p 1.6000 8.0000 0.0226 CC 1897.763477 1 1.4938 3564 | 19/44
66 h-m-p 1.6000 8.0000 0.0040 CC 1897.761804 1 2.0091 3638 | 19/44
67 h-m-p 0.7600 8.0000 0.0106 YC 1897.760855 1 1.6754 3711 | 19/44
68 h-m-p 1.6000 8.0000 0.0052 C 1897.760596 0 1.5347 3783 | 19/44
69 h-m-p 1.6000 8.0000 0.0014 C 1897.760514 0 1.5352 3855 | 19/44
70 h-m-p 1.6000 8.0000 0.0002 C 1897.760490 0 1.4022 3927 | 19/44
71 h-m-p 0.5370 8.0000 0.0004 +C 1897.760482 0 1.9658 4000 | 19/44
72 h-m-p 1.6000 8.0000 0.0003 C 1897.760478 0 1.7095 4072 | 19/44
73 h-m-p 1.6000 8.0000 0.0002 C 1897.760478 0 1.5945 4144 | 19/44
74 h-m-p 1.6000 8.0000 0.0000 C 1897.760478 0 1.5452 4216 | 19/44
75 h-m-p 1.6000 8.0000 0.0000 C 1897.760478 0 1.9509 4288 | 19/44
76 h-m-p 1.5880 8.0000 0.0000 C 1897.760478 0 1.8208 4360 | 19/44
77 h-m-p 1.6000 8.0000 0.0000 ++ 1897.760478 m 8.0000 4432 | 19/44
78 h-m-p 1.2811 8.0000 0.0000 --------C 1897.760478 0 0.0000 4512
Out..
lnL = -1897.760478
4513 lfun, 13539 eigenQcodon, 370066 P(t)
end of tree file.
Time used: 2:51
Model 2: PositiveSelection
TREE # 1
(12, 16, 25, (((((((11, 10, 15, 29), 8), 22, 26, 30, 1, 3, 2, 7, 14, 19, 24, 9, 28), 17), ((13, 23), (18, 4), (27, 5))), 6), 21, 20)); MP score: 87
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
36
0.016279 0.107792 0.026393 0.045140 0.066666 0.062396 0.076305 0.107675 0.011822 0.045023 0.084849 0.086585 0.078991 0.069561 0.017431 0.051664 0.027913 0.028802 0.072713 0.057854 0.022054 0.064624 0.043846 0.050926 0.104435 0.054091 0.017873 0.075802 0.088981 0.053663 0.061757 0.017198 0.053336 0.018697 0.018474 0.077276 0.094085 0.090428 0.011591 0.070002 0.080308 4.872053 0.876173 0.208933 0.407536 1.316689
ntime & nrate & np: 41 3 46
Bounds (np=46):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 3.001427
np = 46
lnL0 = -2446.827041
Iterating by ming2
Initial: fx= 2446.827041
x= 0.01628 0.10779 0.02639 0.04514 0.06667 0.06240 0.07630 0.10767 0.01182 0.04502 0.08485 0.08659 0.07899 0.06956 0.01743 0.05166 0.02791 0.02880 0.07271 0.05785 0.02205 0.06462 0.04385 0.05093 0.10444 0.05409 0.01787 0.07580 0.08898 0.05366 0.06176 0.01720 0.05334 0.01870 0.01847 0.07728 0.09409 0.09043 0.01159 0.07000 0.08031 4.87205 0.87617 0.20893 0.40754 1.31669
1 h-m-p 0.0000 0.0001 1794.9154 ++ 2293.872076 m 0.0001 51 | 1/46
2 h-m-p 0.0000 0.0000 3571.5034 ++ 2289.487267 m 0.0000 100 | 2/46
3 h-m-p 0.0000 0.0000 256686.5417 ++ 2231.627548 m 0.0000 149 | 3/46
4 h-m-p 0.0000 0.0000 735017.9432 ++ 2220.307112 m 0.0000 198 | 4/46
5 h-m-p 0.0000 0.0000 387114.5803 ++ 2214.649241 m 0.0000 247 | 5/46
6 h-m-p 0.0000 0.0000 21181.3931 ++ 2122.784608 m 0.0000 296 | 6/46
7 h-m-p 0.0000 0.0000 36429.1005 ++ 2084.599088 m 0.0000 345 | 7/46
8 h-m-p 0.0000 0.0000 175619.5533 ++ 2080.885565 m 0.0000 394 | 8/46
9 h-m-p 0.0000 0.0000 36672.2768 ++ 2070.037931 m 0.0000 443 | 9/46
10 h-m-p 0.0000 0.0000 15824.8479 ++ 2038.376329 m 0.0000 492 | 10/46
11 h-m-p 0.0000 0.0000 28122.2290 ++ 2028.742760 m 0.0000 541 | 11/46
12 h-m-p 0.0000 0.0000 14396.2854 ++ 2012.672264 m 0.0000 590 | 12/46
13 h-m-p 0.0000 0.0000 4726.3774 ++ 2012.043884 m 0.0000 639 | 13/46
14 h-m-p 0.0000 0.0000 11729.3079 ++ 2004.267362 m 0.0000 688 | 14/46
15 h-m-p 0.0000 0.0000 11658.1796 ++ 1991.755151 m 0.0000 737 | 15/46
16 h-m-p 0.0000 0.0000 3045.6796 ++ 1990.075324 m 0.0000 786 | 16/46
17 h-m-p 0.0000 0.0000 7899.0209 ++ 1969.629626 m 0.0000 835 | 17/46
18 h-m-p 0.0000 0.0000 3251.2859 ++ 1959.761104 m 0.0000 884 | 18/46
19 h-m-p 0.0000 0.0000 1512.4503 ++ 1958.195314 m 0.0000 933 | 19/46
20 h-m-p 0.0000 0.0003 165.7918 ++YYYYYC 1953.482022 5 0.0002 989 | 19/46
21 h-m-p 0.0001 0.0003 105.3947 YCYCCC 1952.331796 5 0.0001 1046 | 19/46
22 h-m-p 0.0001 0.0003 190.5326 +YCYCCC 1948.570702 5 0.0002 1104 | 19/46
23 h-m-p 0.0000 0.0001 421.4183 +YCYCCC 1944.730835 5 0.0001 1162 | 19/46
24 h-m-p 0.0001 0.0003 111.8098 CCCC 1944.302184 3 0.0001 1217 | 19/46
25 h-m-p 0.0001 0.0004 72.9721 YCCCC 1943.846174 4 0.0002 1273 | 19/46
26 h-m-p 0.0001 0.0005 98.6793 +YCYCCC 1942.636475 5 0.0003 1331 | 19/46
27 h-m-p 0.0001 0.0003 609.5677 YCYCCC 1939.591255 5 0.0001 1388 | 19/46
28 h-m-p 0.0000 0.0002 469.7243 CCCCC 1938.747802 4 0.0001 1445 | 19/46
29 h-m-p 0.0001 0.0003 159.7121 CCCC 1938.468263 3 0.0001 1500 | 19/46
30 h-m-p 0.0001 0.0018 129.5675 +++ 1930.249856 m 0.0018 1550 | 20/46
31 h-m-p 0.0001 0.0004 667.8275 ++ 1919.357087 m 0.0004 1599 | 21/46
32 h-m-p 0.0016 0.0079 80.4083 CCCC 1917.944575 3 0.0026 1654 | 21/46
33 h-m-p 0.0022 0.0108 30.7671 +YYYCCC 1915.419777 5 0.0081 1711 | 21/46
34 h-m-p 0.0022 0.0111 5.0174 YCCCC 1913.920235 4 0.0055 1767 | 21/46
35 h-m-p 0.0014 0.0148 20.3223 +YYYYC 1912.989525 4 0.0052 1821 | 21/46
36 h-m-p 0.0049 0.0244 8.3837 YCCCC 1911.175303 4 0.0120 1877 | 21/46
37 h-m-p 0.0140 0.0702 3.1842 YCCCC 1910.085275 4 0.0290 1933 | 21/46
38 h-m-p 0.0027 0.0137 14.4052 +YYCYC 1908.633284 4 0.0092 1988 | 21/46
39 h-m-p 0.0058 0.0511 23.1408 +YYC 1905.281083 2 0.0177 2040 | 21/46
40 h-m-p 0.0227 0.1135 6.5904 YCYCCC 1901.612337 5 0.0576 2097 | 21/46
41 h-m-p 0.0175 0.0876 1.1472 CCC 1901.383596 2 0.0197 2150 | 21/46
42 h-m-p 0.0633 0.3837 0.3577 CCC 1900.959476 2 0.0995 2203 | 20/46
43 h-m-p 0.0111 0.1097 3.2004 -YC 1900.944900 1 0.0011 2279 | 20/46
44 h-m-p 0.0015 0.0618 2.4074 ++YYC 1900.422537 2 0.0205 2332 | 20/46
45 h-m-p 0.0518 0.2592 0.4712 YCCCC 1899.867924 4 0.1218 2388 | 20/46
46 h-m-p 0.0820 0.4935 0.6998 +YCCC 1898.809178 3 0.2474 2469 | 20/46
47 h-m-p 0.3054 1.5269 0.4575 CCCC 1898.350804 3 0.3889 2550 | 20/46
48 h-m-p 0.4467 6.2559 0.3982 YCCC 1898.085675 3 0.7836 2630 | 20/46
49 h-m-p 0.7953 4.9769 0.3924 CCC 1897.891328 2 0.9618 2709 | 19/46
50 h-m-p 1.0380 7.7918 0.3636 YCC 1897.808478 2 0.7151 2787 | 19/46
51 h-m-p 0.7368 3.6839 0.2221 C 1897.747757 0 0.7368 2863 | 19/46
52 h-m-p 0.6576 8.0000 0.2489 +YCC 1897.615305 2 1.9999 2943 | 19/46
53 h-m-p 1.2184 8.0000 0.4085 CCCC 1897.460044 3 1.6030 3025 | 19/46
54 h-m-p 1.6000 8.0000 0.1974 CCC 1897.375576 2 1.3832 3105 | 19/46
55 h-m-p 1.1131 8.0000 0.2453 CCC 1897.335334 2 1.2878 3185 | 19/46
56 h-m-p 1.6000 8.0000 0.1331 CYC 1897.296194 2 1.4656 3264 | 19/46
57 h-m-p 0.8975 8.0000 0.2173 CCC 1897.270538 2 1.2253 3344 | 19/46
58 h-m-p 1.6000 8.0000 0.0725 CC 1897.257087 1 1.4335 3422 | 19/46
59 h-m-p 1.6000 8.0000 0.0470 CC 1897.248715 1 1.8829 3500 | 19/46
60 h-m-p 1.6000 8.0000 0.0516 YC 1897.239795 1 3.1492 3577 | 19/46
61 h-m-p 1.6000 8.0000 0.0935 YC 1897.226611 1 3.9774 3654 | 19/46
62 h-m-p 1.6000 8.0000 0.1847 YCC 1897.209663 2 2.7702 3733 | 19/46
63 h-m-p 1.6000 8.0000 0.1459 CCC 1897.198709 2 2.1673 3813 | 19/46
64 h-m-p 0.7686 8.0000 0.4114 YCC 1897.189849 2 1.4825 3892 | 19/46
65 h-m-p 1.6000 8.0000 0.1658 CC 1897.183429 1 2.1684 3970 | 19/46
66 h-m-p 1.1210 8.0000 0.3208 YC 1897.178298 1 1.9310 4047 | 19/46
67 h-m-p 1.6000 8.0000 0.1420 CC 1897.175195 1 2.1996 4125 | 19/46
68 h-m-p 1.0775 8.0000 0.2898 YC 1897.173319 1 1.8699 4202 | 19/46
69 h-m-p 1.6000 8.0000 0.0879 C 1897.172680 0 1.8170 4278 | 19/46
70 h-m-p 0.9998 8.0000 0.1598 +C 1897.171932 0 3.6035 4355 | 19/46
71 h-m-p 1.6000 8.0000 0.2045 CC 1897.171377 1 2.4535 4433 | 19/46
72 h-m-p 1.6000 8.0000 0.2717 YC 1897.170969 1 2.9118 4510 | 19/46
73 h-m-p 1.6000 8.0000 0.2466 C 1897.170824 0 1.9601 4586 | 19/46
74 h-m-p 1.6000 8.0000 0.2129 Y 1897.170734 0 2.8962 4662 | 19/46
75 h-m-p 1.6000 8.0000 0.2543 YC 1897.170645 1 3.1527 4739 | 19/46
76 h-m-p 1.6000 8.0000 0.3391 C 1897.170594 0 2.1143 4815 | 19/46
77 h-m-p 1.6000 8.0000 0.2097 C 1897.170585 0 1.7011 4891 | 19/46
78 h-m-p 1.6000 8.0000 0.1645 Y 1897.170580 0 3.1335 4967 | 19/46
79 h-m-p 1.6000 8.0000 0.1651 Y 1897.170575 0 3.7335 5043 | 19/46
80 h-m-p 1.6000 8.0000 0.2783 C 1897.170572 0 2.5555 5119 | 19/46
81 h-m-p 1.6000 8.0000 0.3100 Y 1897.170570 0 2.6457 5195 | 19/46
82 h-m-p 1.6000 8.0000 0.3083 C 1897.170570 0 2.4015 5271 | 19/46
83 h-m-p 1.6000 8.0000 0.3556 Y 1897.170569 0 2.6939 5347 | 19/46
84 h-m-p 1.6000 8.0000 0.3349 Y 1897.170569 0 2.5705 5423 | 19/46
85 h-m-p 1.6000 8.0000 0.3277 C 1897.170569 0 2.1166 5499 | 19/46
86 h-m-p 1.6000 8.0000 0.2390 Y 1897.170569 0 3.5893 5575 | 19/46
87 h-m-p 1.6000 8.0000 0.3170 C 1897.170569 0 1.8858 5651 | 19/46
88 h-m-p 0.4992 8.0000 1.1975 Y 1897.170569 0 1.1239 5727 | 19/46
89 h-m-p 1.1065 8.0000 1.2164 Y 1897.170569 0 1.1065 5776 | 19/46
90 h-m-p 1.6000 8.0000 0.2631 C 1897.170569 0 0.5245 5825 | 19/46
91 h-m-p 1.6000 8.0000 0.0704 -Y 1897.170569 0 0.1701 5902 | 19/46
92 h-m-p 0.0299 8.0000 0.4002 -Y 1897.170569 0 0.0019 5979 | 19/46
93 h-m-p 0.0160 8.0000 0.0793 --------Y 1897.170569 0 0.0000 6063 | 19/46
94 h-m-p 0.0160 8.0000 0.0348 ---C 1897.170569 0 0.0001 6142 | 19/46
95 h-m-p 0.0160 8.0000 0.0061 -------------.. | 19/46
96 h-m-p 0.0160 8.0000 0.0835 ------------- | 19/46
97 h-m-p 0.0160 8.0000 0.0835 -------------
Out..
lnL = -1897.170569
6404 lfun, 25616 eigenQcodon, 787692 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -1906.215645 S = -1845.341193 -67.592682
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 117 patterns 7:44
did 20 / 117 patterns 7:44
did 30 / 117 patterns 7:44
did 40 / 117 patterns 7:44
did 50 / 117 patterns 7:45
did 60 / 117 patterns 7:45
did 70 / 117 patterns 7:45
did 80 / 117 patterns 7:45
did 90 / 117 patterns 7:45
did 100 / 117 patterns 7:45
did 110 / 117 patterns 7:45
did 117 / 117 patterns 7:45end of tree file.
Time used: 7:45
Model 7: beta
TREE # 1
(12, 16, 25, (((((((11, 10, 15, 29), 8), 22, 26, 30, 1, 3, 2, 7, 14, 19, 24, 9, 28), 17), ((13, 23), (18, 4), (27, 5))), 6), 21, 20)); MP score: 87
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
36
0.055057 0.053740 0.063790 0.100215 0.056119 0.106824 0.053521 0.037079 0.051532 0.098054 0.083841 0.046275 0.081578 0.060708 0.055639 0.070263 0.023894 0.077081 0.010914 0.072990 0.034066 0.098786 0.075276 0.088071 0.091202 0.063061 0.054643 0.052822 0.015681 0.078500 0.040825 0.039062 0.101244 0.028666 0.055684 0.066630 0.078640 0.017002 0.038556 0.060559 0.102997 4.867706 0.614954 1.466183
ntime & nrate & np: 41 1 44
Bounds (np=44):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 5.233456
np = 44
lnL0 = -2430.763855
Iterating by ming2
Initial: fx= 2430.763855
x= 0.05506 0.05374 0.06379 0.10021 0.05612 0.10682 0.05352 0.03708 0.05153 0.09805 0.08384 0.04627 0.08158 0.06071 0.05564 0.07026 0.02389 0.07708 0.01091 0.07299 0.03407 0.09879 0.07528 0.08807 0.09120 0.06306 0.05464 0.05282 0.01568 0.07850 0.04082 0.03906 0.10124 0.02867 0.05568 0.06663 0.07864 0.01700 0.03856 0.06056 0.10300 4.86771 0.61495 1.46618
1 h-m-p 0.0000 0.0000 1326.9316 ++ 2351.336351 m 0.0000 93 | 1/44
2 h-m-p 0.0000 0.0000 23125.9925 ++ 2257.392901 m 0.0000 184 | 2/44
3 h-m-p 0.0000 0.0000 27221.0753 ++ 2194.240139 m 0.0000 274 | 2/44
4 h-m-p 0.0000 0.0000 35945.7151 ++ 2156.970153 m 0.0000 363 | 3/44
5 h-m-p 0.0000 0.0000 27148.7968 ++ 2145.159604 m 0.0000 452 | 4/44
6 h-m-p 0.0000 0.0000 19510.2569 ++ 2071.611352 m 0.0000 540 | 5/44
7 h-m-p 0.0000 0.0000 12511.2340 ++ 2065.418225 m 0.0000 627 | 6/44
8 h-m-p 0.0000 0.0000 40435.6172 ++ 2037.421263 m 0.0000 713 | 7/44
9 h-m-p 0.0000 0.0000 60577.0906 ++ 2035.955209 m 0.0000 798 | 8/44
10 h-m-p 0.0000 0.0000 27038.6444 ++ 2027.321442 m 0.0000 882 | 9/44
11 h-m-p 0.0000 0.0000 51374.5118 ++ 2025.927041 m 0.0000 965 | 10/44
12 h-m-p 0.0000 0.0000 29721.4025 ++ 2005.898026 m 0.0000 1047 | 11/44
13 h-m-p 0.0000 0.0000 8077.8305 ++ 1993.329613 m 0.0000 1128 | 12/44
14 h-m-p 0.0000 0.0000 3539.2098 ++ 1989.300426 m 0.0000 1208 | 13/44
15 h-m-p 0.0000 0.0000 7874.4655 ++ 1982.371005 m 0.0000 1287 | 14/44
16 h-m-p 0.0000 0.0000 7199.5698 ++ 1980.663970 m 0.0000 1365 | 15/44
17 h-m-p 0.0000 0.0000 4492.2250 ++ 1971.070088 m 0.0000 1442 | 16/44
18 h-m-p 0.0000 0.0000 3302.5133 ++ 1967.640734 m 0.0000 1518 | 17/44
19 h-m-p 0.0000 0.0000 2032.6849 ++ 1961.238980 m 0.0000 1593 | 18/44
20 h-m-p 0.0000 0.0000 717.2049 ++ 1959.579204 m 0.0000 1667 | 19/44
21 h-m-p 0.0000 0.0003 173.6599 ++YCCYC 1948.422167 4 0.0002 1749 | 19/44
22 h-m-p 0.0000 0.0001 540.2251 +YYYCCC 1941.721137 5 0.0001 1829 | 19/44
23 h-m-p 0.0000 0.0001 459.3923 YCYCCC 1939.275443 5 0.0000 1909 | 19/44
24 h-m-p 0.0000 0.0000 412.0144 +YCYCCC 1938.258686 5 0.0000 1990 | 19/44
25 h-m-p 0.0000 0.0003 230.1856 YCCCC 1936.477808 4 0.0001 2069 | 19/44
26 h-m-p 0.0000 0.0002 263.8498 CCC 1935.745906 2 0.0000 2145 | 19/44
27 h-m-p 0.0000 0.0005 249.6341 +YCYCCCC 1930.002184 6 0.0003 2228 | 19/44
28 h-m-p 0.0003 0.0014 57.0215 +YYCYYCC 1921.330983 6 0.0013 2310 | 19/44
29 h-m-p 0.0004 0.0020 50.9688 +YYYYYCCCCC 1917.507584 9 0.0016 2396 | 19/44
30 h-m-p 0.0005 0.0023 96.7903 +YYYCYCCC 1912.468763 7 0.0019 2479 | 19/44
31 h-m-p 0.0002 0.0009 264.8238 CYCCCC 1910.952951 5 0.0003 2560 | 19/44
32 h-m-p 0.0096 0.0481 2.1990 CCC 1910.299164 2 0.0098 2636 | 19/44
33 h-m-p 0.0012 0.0177 17.5838 +YYC 1909.677154 2 0.0039 2711 | 19/44
34 h-m-p 0.0058 0.0292 1.6021 YC 1909.668449 1 0.0010 2784 | 19/44
35 h-m-p 0.0003 0.0316 4.8234 ++YC 1909.503447 1 0.0039 2859 | 19/44
36 h-m-p 0.0016 0.0806 11.9546 ++YC 1908.943518 1 0.0158 2934 | 19/44
37 h-m-p 0.0080 0.0402 5.2078 -------------.. | 19/44
38 h-m-p 0.0000 0.0000 1261427.4846 ----CYCYYCCC 1905.510117 7 0.0000 3104 | 19/44
39 h-m-p 0.0000 0.0000 1452.5557 CYYCCC 1902.646718 5 0.0000 3184 | 19/44
40 h-m-p 0.0000 0.0000 452.4947 +YYCCC 1900.143375 4 0.0000 3263 | 19/44
41 h-m-p 0.0000 0.0000 284.0318 CCC 1899.920306 2 0.0000 3339 | 19/44
42 h-m-p 0.0000 0.0002 117.0055 YC 1899.718079 1 0.0000 3412 | 19/44
43 h-m-p 0.0000 0.0003 125.5928 YCCC 1899.643981 3 0.0000 3489 | 19/44
44 h-m-p 0.0000 0.0002 62.7443 YCC 1899.613645 2 0.0000 3564 | 19/44
45 h-m-p 0.0000 0.0009 52.5383 CC 1899.587597 1 0.0000 3638 | 19/44
46 h-m-p 0.0001 0.0004 36.4847 YC 1899.579549 1 0.0000 3711 | 19/44
47 h-m-p 0.0000 0.0006 26.3880 CC 1899.573329 1 0.0000 3785 | 19/44
48 h-m-p 0.0000 0.0008 45.9497 CC 1899.565360 1 0.0000 3859 | 19/44
49 h-m-p 0.0000 0.0010 32.4223 CC 1899.559792 1 0.0000 3933 | 19/44
50 h-m-p 0.0000 0.0031 32.3278 +YC 1899.546364 1 0.0001 4007 | 19/44
51 h-m-p 0.0001 0.0005 49.7584 YYC 1899.536133 2 0.0001 4081 | 19/44
52 h-m-p 0.0000 0.0009 96.0081 CY 1899.525958 1 0.0000 4155 | 19/44
53 h-m-p 0.0001 0.0032 33.7159 YC 1899.520913 1 0.0000 4228 | 19/44
54 h-m-p 0.0002 0.0063 7.0429 C 1899.519979 0 0.0001 4300 | 19/44
55 h-m-p 0.0003 0.0295 1.4698 YC 1899.519747 1 0.0002 4373 | 19/44
56 h-m-p 0.0002 0.1011 6.2429 +YC 1899.517133 1 0.0007 4447 | 19/44
57 h-m-p 0.0001 0.0178 55.3750 ++CCC 1899.454837 2 0.0018 4525 | 19/44
58 h-m-p 0.0001 0.0007 1942.9108 +YYYCYCYCC 1898.870396 8 0.0004 4609 | 19/44
59 h-m-p 0.0000 0.0001 11567.5075 YCCCCC 1898.750934 5 0.0000 4690 | 19/44
60 h-m-p 0.0025 0.0125 10.4676 --CC 1898.750558 1 0.0001 4766 | 19/44
61 h-m-p 0.0006 0.0459 0.9654 CC 1898.749515 1 0.0009 4840 | 19/44
62 h-m-p 0.0000 0.0216 17.3086 ++++CCCCC 1898.132655 4 0.0143 4924 | 19/44
63 h-m-p 0.7220 3.6100 0.1335 YCCC 1897.886450 3 0.4099 5001 | 19/44
64 h-m-p 0.1692 0.8461 0.2346 CCCC 1897.832437 3 0.2454 5079 | 19/44
65 h-m-p 0.7522 6.9517 0.0765 CCCC 1897.809059 3 0.9150 5157 | 19/44
66 h-m-p 1.4049 7.0247 0.0388 YYYY 1897.803191 3 1.4049 5232 | 19/44
67 h-m-p 1.6000 8.0000 0.0057 CC 1897.802742 1 0.5216 5306 | 19/44
68 h-m-p 0.2827 8.0000 0.0106 YC 1897.802437 1 0.6280 5379 | 19/44
69 h-m-p 1.0166 8.0000 0.0065 C 1897.802333 0 1.1075 5451 | 19/44
70 h-m-p 0.8135 8.0000 0.0089 C 1897.802245 0 0.9313 5523 | 19/44
71 h-m-p 0.9707 8.0000 0.0085 Y 1897.802174 0 0.9707 5595 | 19/44
72 h-m-p 0.4965 5.1321 0.0167 C 1897.802167 0 0.1241 5667 | 19/44
73 h-m-p 0.1101 4.4040 0.0188 Y 1897.802153 0 0.2104 5739 | 19/44
74 h-m-p 0.2309 4.7240 0.0171 Y 1897.802144 0 0.2309 5811 | 19/44
75 h-m-p 0.2253 4.5861 0.0176 Y 1897.802136 0 0.2253 5883 | 19/44
76 h-m-p 0.2092 4.1072 0.0189 Y 1897.802131 0 0.1248 5955 | 19/44
77 h-m-p 0.0902 2.6851 0.0262 Y 1897.802130 0 0.0501 6027 | 19/44
78 h-m-p 0.0311 1.6325 0.0422 Y 1897.802125 0 0.0658 6099 | 19/44
79 h-m-p 0.0317 0.7153 0.0876 --------Y 1897.802125 0 0.0000 6179 | 19/44
80 h-m-p 0.0160 8.0000 0.0022 ++Y 1897.802112 0 0.4206 6253 | 19/44
81 h-m-p 0.9099 8.0000 0.0010 Y 1897.802112 0 0.1628 6325 | 19/44
82 h-m-p 0.2696 8.0000 0.0006 --C 1897.802112 0 0.0059 6399 | 19/44
83 h-m-p 0.0160 8.0000 0.0023 C 1897.802112 0 0.0046 6471 | 19/44
84 h-m-p 0.0160 8.0000 0.0047 C 1897.802112 0 0.0040 6543 | 19/44
85 h-m-p 0.0160 8.0000 0.0084 Y 1897.802112 0 0.0026 6615 | 19/44
86 h-m-p 0.0108 5.4095 0.0139 Y 1897.802112 0 0.0019 6687 | 19/44
87 h-m-p 0.0063 3.1520 0.0230 Y 1897.802112 0 0.0012 6759 | 19/44
88 h-m-p 0.0037 1.8577 0.0380 Y 1897.802112 0 0.0007 6831 | 19/44
89 h-m-p 0.0019 0.9417 0.0737 Y 1897.802112 0 0.0003 6903 | 19/44
90 h-m-p 0.0010 0.4929 0.1391 Y 1897.802112 0 0.0001 6975 | 19/44
91 h-m-p 0.0003 0.1592 0.4289 -C 1897.802112 0 0.0000 7048 | 19/44
92 h-m-p 0.0000 0.0182 3.7335 -C 1897.802112 0 0.0000 7121 | 19/44
93 h-m-p 0.0160 8.0000 0.4633 -------C 1897.802112 0 0.0000 7200 | 19/44
94 h-m-p 0.0025 1.2361 0.0507 -----------Y 1897.802112 0 0.0000 7283 | 19/44
95 h-m-p 0.0160 8.0000 0.0069 +Y 1897.802111 0 0.1566 7356 | 19/44
96 h-m-p 0.1270 8.0000 0.0085 Y 1897.802111 0 0.0676 7428 | 19/44
97 h-m-p 0.0612 8.0000 0.0093 Y 1897.802111 0 0.0326 7500 | 19/44
98 h-m-p 0.0307 8.0000 0.0099 Y 1897.802111 0 0.0167 7572 | 19/44
99 h-m-p 0.0162 8.0000 0.0103 Y 1897.802111 0 0.0086 7644 | 19/44
100 h-m-p 0.0160 8.0000 0.0105 C 1897.802111 0 0.0046 7716 | 19/44
101 h-m-p 0.0160 8.0000 0.0108 Y 1897.802111 0 0.0027 7788 | 19/44
102 h-m-p 0.0160 8.0000 0.0112 -C 1897.802111 0 0.0013 7861 | 19/44
103 h-m-p 0.0160 8.0000 0.0110 Y 1897.802111 0 0.0021 7933 | 19/44
104 h-m-p 0.0160 8.0000 0.0119 -----------C 1897.802111 0 0.0000 8016 | 19/44
105 h-m-p 0.0160 8.0000 0.0000 +++C 1897.802109 0 1.4647 8091 | 19/44
106 h-m-p 1.6000 8.0000 0.0000 C 1897.802109 0 1.5020 8163 | 19/44
107 h-m-p 1.6000 8.0000 0.0000 Y 1897.802109 0 0.8890 8235 | 19/44
108 h-m-p 1.6000 8.0000 0.0000 Y 1897.802109 0 0.7120 8307 | 19/44
109 h-m-p 1.5397 8.0000 0.0000 Y 1897.802109 0 0.6358 8379 | 19/44
110 h-m-p 1.6000 8.0000 0.0000 C 1897.802109 0 1.5477 8451 | 19/44
111 h-m-p 0.6357 8.0000 0.0000 -Y 1897.802109 0 0.0397 8524
Out..
lnL = -1897.802109
8525 lfun, 93775 eigenQcodon, 3495250 P(t)
end of tree file.
Time used: 28:32
Model 8: beta&w>1
TREE # 1
(12, 16, 25, (((((((11, 10, 15, 29), 8), 22, 26, 30, 1, 3, 2, 7, 14, 19, 24, 9, 28), 17), ((13, 23), (18, 4), (27, 5))), 6), 21, 20)); MP score: 87
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
36
0.087840 0.032112 0.042522 0.092896 0.084704 0.037842 0.062315 0.041597 0.060382 0.067801 0.089486 0.015447 0.038259 0.049520 0.037050 0.044740 0.070369 0.104289 0.037380 0.022760 0.036167 0.012845 0.032530 0.027287 0.011521 0.050113 0.093372 0.022860 0.068849 0.081166 0.065976 0.023493 0.044352 0.085610 0.018675 0.070520 0.083268 0.052575 0.038248 0.055277 0.049096 4.904305 0.900000 0.734956 1.886661 1.300000
ntime & nrate & np: 41 2 46
Bounds (np=46):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 4.574697
np = 46
lnL0 = -2304.783867
Iterating by ming2
Initial: fx= 2304.783867
x= 0.08784 0.03211 0.04252 0.09290 0.08470 0.03784 0.06231 0.04160 0.06038 0.06780 0.08949 0.01545 0.03826 0.04952 0.03705 0.04474 0.07037 0.10429 0.03738 0.02276 0.03617 0.01285 0.03253 0.02729 0.01152 0.05011 0.09337 0.02286 0.06885 0.08117 0.06598 0.02349 0.04435 0.08561 0.01867 0.07052 0.08327 0.05258 0.03825 0.05528 0.04910 4.90431 0.90000 0.73496 1.88666 1.30000
1 h-m-p 0.0000 0.0000 1305.6652 ++ 2221.224832 m 0.0000 97 | 1/46
2 h-m-p 0.0000 0.0000 41242.0756 ++ 2212.474810 m 0.0000 192 | 2/46
3 h-m-p 0.0000 0.0000 26738.1615 ++ 2160.430657 m 0.0000 286 | 2/46
4 h-m-p 0.0000 0.0000 19932.9856 +CYCYCYC 2149.483233 6 0.0000 389 | 2/46
5 h-m-p 0.0000 0.0000 11141.8637 ++ 2147.306999 m 0.0000 482 | 3/46
6 h-m-p 0.0000 0.0000 21908.7434 ++ 2122.207788 m 0.0000 575 | 4/46
7 h-m-p 0.0000 0.0000 1237.8771 ++ 2099.008689 m 0.0000 667 | 5/46
8 h-m-p 0.0000 0.0000 1545.5449 ++ 2095.565364 m 0.0000 758 | 6/46
9 h-m-p 0.0000 0.0000 127019.7670 ++ 2071.978088 m 0.0000 848 | 7/46
10 h-m-p 0.0000 0.0000 140608.6107 ++ 2068.180094 m 0.0000 937 | 8/46
11 h-m-p 0.0000 0.0000 10752.4964 ++ 2049.513851 m 0.0000 1025 | 9/46
12 h-m-p 0.0000 0.0000 13042.2048 ++ 2039.386704 m 0.0000 1112 | 10/46
13 h-m-p 0.0000 0.0000 51793.7270 ++ 2025.931691 m 0.0000 1198 | 11/46
14 h-m-p 0.0000 0.0000 48537.6359 ++ 2023.576766 m 0.0000 1283 | 12/46
15 h-m-p 0.0000 0.0000 17274.5693 ++ 2021.628648 m 0.0000 1367 | 13/46
16 h-m-p 0.0000 0.0000 13777.6175 ++ 2010.822922 m 0.0000 1450 | 14/46
17 h-m-p 0.0000 0.0000 10091.3434 ++ 1987.436649 m 0.0000 1532 | 15/46
18 h-m-p 0.0000 0.0000 7464.8040 ++ 1981.100109 m 0.0000 1613 | 16/46
19 h-m-p 0.0000 0.0000 5137.3427 ++ 1963.427337 m 0.0000 1693 | 17/46
20 h-m-p 0.0000 0.0000 3177.9293 ++ 1956.465641 m 0.0000 1772 | 18/46
21 h-m-p 0.0000 0.0000 1439.0245 ++ 1951.657301 m 0.0000 1850 | 19/46
22 h-m-p 0.0001 0.0004 183.2971 +CCCC 1939.610412 3 0.0003 1935 | 19/46
23 h-m-p 0.0000 0.0002 329.6597 YCCCC 1935.506067 4 0.0001 2018 | 19/46
24 h-m-p 0.0000 0.0002 182.9989 +YCYCCC 1933.555678 5 0.0001 2103 | 19/46
25 h-m-p 0.0000 0.0001 513.1630 +YYCCC 1931.971911 4 0.0000 2186 | 19/46
26 h-m-p 0.0000 0.0001 387.1170 +YYCYC 1930.694200 4 0.0000 2268 | 19/46
27 h-m-p 0.0000 0.0001 357.4309 YCYCCC 1929.948092 5 0.0000 2352 | 19/46
28 h-m-p 0.0001 0.0003 206.7260 CCCCC 1929.163147 4 0.0001 2436 | 19/46
29 h-m-p 0.0001 0.0005 67.2810 +YCYCCC 1927.542567 5 0.0003 2521 | 19/46
30 h-m-p 0.0000 0.0002 281.2658 +YYYYC 1924.257740 4 0.0001 2602 | 19/46
31 h-m-p 0.0001 0.0004 108.3871 YYC 1924.016368 2 0.0001 2680 | 19/46
32 h-m-p 0.0001 0.0019 53.6934 +CYYCC 1921.941485 4 0.0011 2764 | 19/46
33 h-m-p 0.0000 0.0002 1034.8713 +YYCCCC 1917.906715 5 0.0001 2849 | 19/46
34 h-m-p 0.0001 0.0007 174.7399 YCYCCC 1916.029508 5 0.0004 2933 | 19/46
35 h-m-p 0.0001 0.0007 145.1582 +YYYYC 1913.678204 4 0.0006 3014 | 19/46
36 h-m-p 0.0001 0.0007 408.0365 YCYCCC 1909.888022 5 0.0004 3098 | 19/46
37 h-m-p 0.0004 0.0021 59.0768 CCCC 1909.458270 3 0.0005 3180 | 19/46
38 h-m-p 0.0079 0.0641 3.8613 YCC 1908.502972 2 0.0158 3259 | 19/46
39 h-m-p 0.0016 0.0079 26.4067 +YCCC 1906.799741 3 0.0043 3341 | 19/46
40 h-m-p 0.0018 0.0088 35.2391 +YYYCYC 1901.863346 5 0.0075 3424 | 19/46
41 h-m-p 0.0600 0.2999 3.3785 YCCCC 1900.965548 4 0.0317 3507 | 19/46
42 h-m-p 0.0761 0.3804 0.8999 +
QuantileBeta(0.15, 0.00500, 2.16420) = 1.219075e-160 2000 rounds
YCYC 1899.579300 3 0.2945 3588 | 19/46
43 h-m-p 0.1031 0.5153 1.2869 YCYCCC 1898.529685 5 0.2617 3672 | 19/46
44 h-m-p 0.1992 0.9959 0.1588 CCCC 1898.330965 3 0.3026 3754 | 19/46
45 h-m-p 0.1607 2.3806 0.2990 YCCC 1898.218190 3 0.3780 3835 | 19/46
46 h-m-p 0.3911 2.7567 0.2890 CC 1898.125899 1 0.3712 3913 | 19/46
47 h-m-p 0.5722 3.7619 0.1875 CCCC 1897.981057 3 0.8822 3995 | 19/46
48 h-m-p 1.6000 8.0000 0.0737 YCC 1897.867227 2 1.1431 4074 | 19/46
49 h-m-p 0.4010 4.9409 0.2101 +YYC 1897.731054 2 1.1946 4153 | 19/46
50 h-m-p 1.0552 5.2762 0.1873 CCCC 1897.545184 3 1.3603 4235 | 19/46
51 h-m-p 1.6000 8.0000 0.0680 YC 1897.501250 1 0.7071 4312 | 19/46
52 h-m-p 0.2381 4.2442 0.2021 +YCC 1897.444534 2 0.6614 4392 | 19/46
53 h-m-p 1.6000 8.0000 0.0423 CC 1897.400370 1 2.3438 4470 | 19/46
54 h-m-p 0.9038 8.0000 0.1098 CC 1897.376658 1 1.2993 4548 | 19/46
55 h-m-p 1.6000 8.0000 0.0659 C 1897.360314 0 1.5535 4624 | 19/46
56 h-m-p 1.6000 8.0000 0.0474 CC 1897.354306 1 1.3609 4702 | 19/46
57 h-m-p 1.6000 8.0000 0.0262 C 1897.352211 0 1.6610 4778 | 19/46
58 h-m-p 0.9564 8.0000 0.0454 +CC 1897.346577 1 3.5706 4857 | 19/46
59 h-m-p 1.0301 8.0000 0.1575 +YC 1897.333612 1 2.9302 4935 | 19/46
60 h-m-p 1.6000 8.0000 0.2565 CC 1897.322197 1 1.7976 5013 | 19/46
61 h-m-p 1.6000 8.0000 0.2198 CC 1897.311606 1 2.4194 5091 | 19/46
62 h-m-p 1.6000 8.0000 0.1938 YC 1897.299302 1 3.6469 5168 | 19/46
63 h-m-p 1.6000 8.0000 0.2702 CC 1897.291102 1 1.9607 5246 | 19/46
64 h-m-p 1.6000 8.0000 0.1227 CC 1897.286717 1 2.4318 5324 | 19/46
65 h-m-p 1.6000 8.0000 0.1479 +CC 1897.279782 1 5.8454 5403 | 19/46
66 h-m-p 1.6000 8.0000 0.2749 +YC 1897.266206 1 4.6789 5481 | 19/46
67 h-m-p 1.6000 8.0000 0.7299 +YC 1897.245617 1 4.0253 5559 | 19/46
68 h-m-p 1.6000 8.0000 0.7165 CC 1897.236508 1 1.9734 5637 | 19/46
69 h-m-p 1.6000 8.0000 0.7400 CC 1897.232791 1 2.4986 5715 | 19/46
70 h-m-p 1.6000 8.0000 0.4883 YC 1897.230056 1 3.6679 5792 | 19/46
71 h-m-p 1.6000 8.0000 0.5692 +YC 1897.225051 1 4.8140 5870 | 19/46
72 h-m-p 1.6000 8.0000 1.1660 +CC 1897.211061 1 6.0396 5949 | 19/46
73 h-m-p 1.6000 8.0000 3.6959 YC 1897.194895 1 2.7391 6026 | 19/46
74 h-m-p 1.6000 8.0000 2.9667 CC 1897.191632 1 2.2858 6104 | 19/46
75 h-m-p 1.6000 8.0000 3.7971 +C 1897.185043 0 6.3187 6181 | 19/46
76 h-m-p 0.7147 3.5735 9.1271 +YC 1897.181005 1 2.1384 6259 | 19/46
77 h-m-p 0.2255 1.1276 11.6158 ++ 1897.179389 m 1.1276 6335 | 19/46
78 h-m-p 0.0000 0.0000 33.8899
h-m-p: 0.00000000e+00 0.00000000e+00 3.38899398e+01 1897.179389
.. | 19/46
79 h-m-p 0.0000 0.0007 5.4493 C 1897.179216 0 0.0000 6484 | 19/46
80 h-m-p 0.0001 0.0325 1.6745 YC 1897.179174 1 0.0000 6561 | 19/46
81 h-m-p 0.0001 0.0193 0.5746 C 1897.179169 0 0.0000 6637 | 19/46
82 h-m-p 0.0001 0.0278 0.7522 C 1897.179167 0 0.0000 6713 | 19/46
83 h-m-p 0.0001 0.0535 0.2045 C 1897.179166 0 0.0000 6789 | 19/46
84 h-m-p 0.0004 0.1799 0.1286 -C 1897.179166 0 0.0000 6866 | 19/46
85 h-m-p 0.0004 0.2181 0.1089 -C 1897.179166 0 0.0000 6943 | 19/46
86 h-m-p 0.0020 0.9853 0.0205 -C 1897.179166 0 0.0001 7020 | 19/46
87 h-m-p 0.0018 0.8826 0.0601 ---Y 1897.179166 0 0.0000 7099 | 19/46
88 h-m-p 0.0021 1.0391 0.0395 -Y 1897.179166 0 0.0001 7176 | 19/46
89 h-m-p 0.0016 0.8068 0.0443 -C 1897.179166 0 0.0001 7253 | 19/46
90 h-m-p 0.0013 0.6445 0.1623 --Y 1897.179166 0 0.0000 7331 | 19/46
91 h-m-p 0.0033 1.6638 0.1418 -C 1897.179166 0 0.0002 7408 | 19/46
92 h-m-p 0.0009 0.4447 0.4393 Y 1897.179165 0 0.0001 7484 | 19/46
93 h-m-p 0.0002 0.1033 5.4193 Y 1897.179163 0 0.0001 7560 | 19/46
94 h-m-p 0.0004 0.1776 4.7207 Y 1897.179157 0 0.0002 7636 | 19/46
95 h-m-p 0.0003 0.1389 24.6269 C 1897.179145 0 0.0001 7712 | 19/46
96 h-m-p 0.0000 0.0123 147.8806 Y 1897.179112 0 0.0000 7788 | 19/46
97 h-m-p 0.0001 0.0511 122.3794 C 1897.179011 0 0.0002 7864 | 19/46
98 h-m-p 0.0001 0.0439 187.4298 C 1897.178877 0 0.0001 7940 | 19/46
99 h-m-p 0.0003 0.0106 93.1419 -C 1897.178870 0 0.0000 8017 | 19/46
100 h-m-p 0.0001 0.0491 32.8916 Y 1897.178862 0 0.0000 8093 | 19/46
101 h-m-p 0.0022 0.3481 0.6846 --Y 1897.178862 0 0.0001 8171 | 19/46
102 h-m-p 0.0160 8.0000 0.0162 ---Y 1897.178862 0 0.0001 8250 | 19/46
103 h-m-p 0.0160 8.0000 0.0374 +++C 1897.178735 0 1.0061 8329 | 19/46
104 h-m-p 1.6000 8.0000 0.0004 Y 1897.178734 0 1.0023 8405 | 19/46
105 h-m-p 1.6000 8.0000 0.0001 Y 1897.178734 0 2.5660 8481 | 19/46
106 h-m-p 1.6000 8.0000 0.0002 ++ 1897.178734 m 8.0000 8557 | 19/46
107 h-m-p 0.4001 2.0003 0.0008 ++ 1897.178734 m 2.0003 8633 | 20/46
108 h-m-p 0.2383 8.0000 0.0007 +Y 1897.178734 0 0.6345 8710 | 20/46
109 h-m-p 1.6000 8.0000 0.0002 Y 1897.178734 0 0.7690 8785 | 20/46
110 h-m-p 1.6000 8.0000 0.0000 Y 1897.178734 0 0.7627 8860 | 20/46
111 h-m-p 1.6000 8.0000 0.0000 C 1897.178734 0 0.4000 8935 | 20/46
112 h-m-p 0.5248 8.0000 0.0000 ---Y 1897.178734 0 0.0021 9013
Out..
lnL = -1897.178734
9014 lfun, 108168 eigenQcodon, 4065314 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -1906.993769 S = -1845.353561 -95.816129
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 117 patterns 52:59
did 20 / 117 patterns 52:59
did 30 / 117 patterns 53:00
did 40 / 117 patterns 53:00
did 50 / 117 patterns 53:00
did 60 / 117 patterns 53:00
did 70 / 117 patterns 53:00
did 80 / 117 patterns 53:01
did 90 / 117 patterns 53:01
did 100 / 117 patterns 53:01
did 110 / 117 patterns 53:01
did 117 / 117 patterns 53:01end of tree file.
Time used: 53:01
The loglikelihoods for models M1, M2, M7 and M8 are -1897.760478 -1897.170569 -1897.802109 -1897.178734 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
USA_Minnesota78_2013_nsp12_VIPR_ALG4_658130505_18680_19696_1_2013_11_28_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
PEDV_MEX_JAL_04_2017_nsp12_VIPR_ALG4_AVU05388_1_18545_19561_1_2017_02_20_Mexico_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
USA_Missouri102_2013_nsp12_VIPR_ALG4_658130645_18680_19696_1_2013_12_15_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
JSCZ1601_nsp12_VIPR_ALG4_1126499706_18716_19732_1_2016_China_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
G2_nsp12_VIPR_ALG4_QCT24236_1_18715_19731_1_2016_China_Swine_PEDV GLENIAFNVVKKGSFVGVEGELPVAVVNDKVLVRDGTVDTLVFINKTSLPTNVAFELYAK
HLJBY_nsp12_VIPR_ALG4_827520734_18691_19707_1_NA_China_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
USA_Tennesse56_2013_nsp12_VIPR_ALG4_658130372_18680_19696_1_2013_11_04_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
PEDV_1C_nsp12_VIPR_ALG4_761662508_18715_19731_1_2012_03_China_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
KNU_141112_S_DEL2_nsp12_VIPR_ALG4_ASA40090_1_18715_19731_1_2016_01_South_Korea_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
GDS29_nsp12_VIPR_ALG4_QCQ19887_1_18715_19731_1_2014_07_11_China_Swine_PEDV GLENIAFNVVKKGFFVGAEGELPVAVVNDKVLVRDGIVDTLVFTNKTSLPTNVAFELYAK
CH_SCZJ_2018_nsp12_VIPR_ALG4_AZL47227_1_18715_19731_1_2018_02_06_China_Swine_PEDV GLENIAFNVVKKGFFVGVEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
PEDV_AUSTRIA_L01064_M10_15_03_2015_nsp12_VIPR_ALG4_SNQ28050_1_18715_19731_1_NA_NA_Unknown_PEDV GLENIAFNVVKKGSFVGVEGELPVAVVNDKVLVRDGTVDTLVFINKTSLPTNVAFELYAK
PEDV_14_nsp12_VIPR_ALG4_761662536_18715_19731_1_2011_04_China_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
TC_PC173_P2_nsp12_VIPR_ALG4_684183318_18703_19719_1_2013_12_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
CHN_SH_2012_5_2012_nsp12_VIPR_ALG4_AVK78140_1_18715_19731_1_2012_02_21_China_Swine_PEDV GLENIAFNVVKKGFFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
PEDV_GER_L00799_K11_14_01_2014_nsp12_VIPR_ALG4_SNT95664_1_18715_19731_1_NA_NA_Unknown_PEDV GLENIAFNVVKKGSFVGVEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
KNU_1904_nsp12_VIPR_ALG4_QNC49739_1_18715_19731_1_2019_01_South_Korea_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
CH_TP_2_2_2018_nsp12_VIPR_ALG4_QCC26580_1_18715_19731_1_2018_China_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
USA_Oklahoma477_2014_nsp12_VIPR_ALG4_825144888_18670_19686_1_2014_12_12_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
USA_IL_2013_59573_5_nsp12_VIPR_ALG4_874010863_18715_19731_1_2013_12_31_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
KNU_1406_1_nsp12_VIPR_ALG4_692148234_18715_19731_1_2014_03_South_Korea_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
USA_Minnesota41_2013_nsp12_VIPR_ALG4_658130323_18680_19696_1_2013_10_14_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
GDS20_nsp12_VIPR_ALG4_QCQ19803_1_18715_19731_1_2012_06_22_China_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
TC_PC182_P2_nsp12_VIPR_ALG4_684183339_18698_19714_1_2013_12_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
PEDV_ROMANIA_L01330_K25_15_02_2015_nsp12_VIPR_ALG4_SNQ28044_1_18715_19731_1_NA_NA_Unknown_PEDV GLENIAFNVVKKGSFVGVEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
PC22A_P30_nsp12_VIPR_ALG4_APX55522_1_18705_19721_1_2014_01_01_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
CH_hubei_2016_nsp12_VIPR_ALG4_ART84249_1_18714_19730_1_2016_03_China_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
CAN_Quebec334_2014_nsp12_VIPR_ALG4_825144874_18670_19686_1_2014_05_14_Canada_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
GDS26_nsp12_VIPR_ALG4_QCQ19827_1_18715_19731_1_2012_09_17_China_Swine_PEDV GLENIAFNVVKKGFFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
EHM_1_JPN_2014_nsp12_VIPR_ALG4_948549137_18657_19673_1_2014_04_Japan_Pig_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAK
************* ***.****************** ****** ****************
USA_Minnesota78_2013_nsp12_VIPR_ALG4_658130505_18680_19696_1_2013_11_28_USA_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
PEDV_MEX_JAL_04_2017_nsp12_VIPR_ALG4_AVU05388_1_18545_19561_1_2017_02_20_Mexico_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
USA_Missouri102_2013_nsp12_VIPR_ALG4_658130645_18680_19696_1_2013_12_15_USA_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
JSCZ1601_nsp12_VIPR_ALG4_1126499706_18716_19732_1_2016_China_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
G2_nsp12_VIPR_ALG4_QCT24236_1_18715_19731_1_2016_China_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
HLJBY_nsp12_VIPR_ALG4_827520734_18691_19707_1_NA_China_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
USA_Tennesse56_2013_nsp12_VIPR_ALG4_658130372_18680_19696_1_2013_11_04_USA_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
PEDV_1C_nsp12_VIPR_ALG4_761662508_18715_19731_1_2012_03_China_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
KNU_141112_S_DEL2_nsp12_VIPR_ALG4_ASA40090_1_18715_19731_1_2016_01_South_Korea_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
GDS29_nsp12_VIPR_ALG4_QCQ19887_1_18715_19731_1_2014_07_11_China_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
CH_SCZJ_2018_nsp12_VIPR_ALG4_AZL47227_1_18715_19731_1_2018_02_06_China_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
PEDV_AUSTRIA_L01064_M10_15_03_2015_nsp12_VIPR_ALG4_SNQ28050_1_18715_19731_1_NA_NA_Unknown_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
PEDV_14_nsp12_VIPR_ALG4_761662536_18715_19731_1_2011_04_China_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
TC_PC173_P2_nsp12_VIPR_ALG4_684183318_18703_19719_1_2013_12_USA_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
CHN_SH_2012_5_2012_nsp12_VIPR_ALG4_AVK78140_1_18715_19731_1_2012_02_21_China_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
PEDV_GER_L00799_K11_14_01_2014_nsp12_VIPR_ALG4_SNT95664_1_18715_19731_1_NA_NA_Unknown_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
KNU_1904_nsp12_VIPR_ALG4_QNC49739_1_18715_19731_1_2019_01_South_Korea_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
CH_TP_2_2_2018_nsp12_VIPR_ALG4_QCC26580_1_18715_19731_1_2018_China_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
USA_Oklahoma477_2014_nsp12_VIPR_ALG4_825144888_18670_19686_1_2014_12_12_USA_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
USA_IL_2013_59573_5_nsp12_VIPR_ALG4_874010863_18715_19731_1_2013_12_31_USA_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
KNU_1406_1_nsp12_VIPR_ALG4_692148234_18715_19731_1_2014_03_South_Korea_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
USA_Minnesota41_2013_nsp12_VIPR_ALG4_658130323_18680_19696_1_2013_10_14_USA_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
GDS20_nsp12_VIPR_ALG4_QCQ19803_1_18715_19731_1_2012_06_22_China_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
TC_PC182_P2_nsp12_VIPR_ALG4_684183339_18698_19714_1_2013_12_USA_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
PEDV_ROMANIA_L01330_K25_15_02_2015_nsp12_VIPR_ALG4_SNQ28044_1_18715_19731_1_NA_NA_Unknown_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
PC22A_P30_nsp12_VIPR_ALG4_APX55522_1_18705_19721_1_2014_01_01_USA_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
CH_hubei_2016_nsp12_VIPR_ALG4_ART84249_1_18714_19730_1_2016_03_China_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
CAN_Quebec334_2014_nsp12_VIPR_ALG4_825144874_18670_19686_1_2014_05_14_Canada_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
GDS26_nsp12_VIPR_ALG4_QCQ19827_1_18715_19731_1_2012_09_17_China_Swine_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
EHM_1_JPN_2014_nsp12_VIPR_ALG4_948549137_18657_19673_1_2014_04_Japan_Pig_PEDV RKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIV
************************************************************
USA_Minnesota78_2013_nsp12_VIPR_ALG4_658130505_18680_19696_1_2013_11_28_USA_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
PEDV_MEX_JAL_04_2017_nsp12_VIPR_ALG4_AVU05388_1_18545_19561_1_2017_02_20_Mexico_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
USA_Missouri102_2013_nsp12_VIPR_ALG4_658130645_18680_19696_1_2013_12_15_USA_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
JSCZ1601_nsp12_VIPR_ALG4_1126499706_18716_19732_1_2016_China_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVAVNTHEDKPFTWYIYTRKNGKFED
G2_nsp12_VIPR_ALG4_QCT24236_1_18715_19731_1_2016_China_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
HLJBY_nsp12_VIPR_ALG4_827520734_18691_19707_1_NA_China_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
USA_Tennesse56_2013_nsp12_VIPR_ALG4_658130372_18680_19696_1_2013_11_04_USA_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
PEDV_1C_nsp12_VIPR_ALG4_761662508_18715_19731_1_2012_03_China_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
KNU_141112_S_DEL2_nsp12_VIPR_ALG4_ASA40090_1_18715_19731_1_2016_01_South_Korea_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
GDS29_nsp12_VIPR_ALG4_QCQ19887_1_18715_19731_1_2014_07_11_China_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
CH_SCZJ_2018_nsp12_VIPR_ALG4_AZL47227_1_18715_19731_1_2018_02_06_China_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
PEDV_AUSTRIA_L01064_M10_15_03_2015_nsp12_VIPR_ALG4_SNQ28050_1_18715_19731_1_NA_NA_Unknown_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
PEDV_14_nsp12_VIPR_ALG4_761662536_18715_19731_1_2011_04_China_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
TC_PC173_P2_nsp12_VIPR_ALG4_684183318_18703_19719_1_2013_12_USA_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
CHN_SH_2012_5_2012_nsp12_VIPR_ALG4_AVK78140_1_18715_19731_1_2012_02_21_China_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
PEDV_GER_L00799_K11_14_01_2014_nsp12_VIPR_ALG4_SNT95664_1_18715_19731_1_NA_NA_Unknown_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
KNU_1904_nsp12_VIPR_ALG4_QNC49739_1_18715_19731_1_2019_01_South_Korea_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
CH_TP_2_2_2018_nsp12_VIPR_ALG4_QCC26580_1_18715_19731_1_2018_China_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
USA_Oklahoma477_2014_nsp12_VIPR_ALG4_825144888_18670_19686_1_2014_12_12_USA_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
USA_IL_2013_59573_5_nsp12_VIPR_ALG4_874010863_18715_19731_1_2013_12_31_USA_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
KNU_1406_1_nsp12_VIPR_ALG4_692148234_18715_19731_1_2014_03_South_Korea_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
USA_Minnesota41_2013_nsp12_VIPR_ALG4_658130323_18680_19696_1_2013_10_14_USA_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
GDS20_nsp12_VIPR_ALG4_QCQ19803_1_18715_19731_1_2012_06_22_China_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
TC_PC182_P2_nsp12_VIPR_ALG4_684183339_18698_19714_1_2013_12_USA_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
PEDV_ROMANIA_L01330_K25_15_02_2015_nsp12_VIPR_ALG4_SNQ28044_1_18715_19731_1_NA_NA_Unknown_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
PC22A_P30_nsp12_VIPR_ALG4_APX55522_1_18705_19721_1_2014_01_01_USA_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
CH_hubei_2016_nsp12_VIPR_ALG4_ART84249_1_18714_19730_1_2016_03_China_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
CAN_Quebec334_2014_nsp12_VIPR_ALG4_825144874_18670_19686_1_2014_05_14_Canada_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
GDS26_nsp12_VIPR_ALG4_QCQ19827_1_18715_19731_1_2012_09_17_China_Swine_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
EHM_1_JPN_2014_nsp12_VIPR_ALG4_948549137_18657_19673_1_2014_04_Japan_Pig_PEDV GSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFED
************************************.***********************
USA_Minnesota78_2013_nsp12_VIPR_ALG4_658130505_18680_19696_1_2013_11_28_USA_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
PEDV_MEX_JAL_04_2017_nsp12_VIPR_ALG4_AVU05388_1_18545_19561_1_2017_02_20_Mexico_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
USA_Missouri102_2013_nsp12_VIPR_ALG4_658130645_18680_19696_1_2013_12_15_USA_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
JSCZ1601_nsp12_VIPR_ALG4_1126499706_18716_19732_1_2016_China_Swine_PEDV YPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
G2_nsp12_VIPR_ALG4_QCT24236_1_18715_19731_1_2016_China_Swine_PEDV YPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
HLJBY_nsp12_VIPR_ALG4_827520734_18691_19707_1_NA_China_Swine_PEDV YPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
USA_Tennesse56_2013_nsp12_VIPR_ALG4_658130372_18680_19696_1_2013_11_04_USA_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
PEDV_1C_nsp12_VIPR_ALG4_761662508_18715_19731_1_2012_03_China_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
KNU_141112_S_DEL2_nsp12_VIPR_ALG4_ASA40090_1_18715_19731_1_2016_01_South_Korea_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
GDS29_nsp12_VIPR_ALG4_QCQ19887_1_18715_19731_1_2014_07_11_China_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
CH_SCZJ_2018_nsp12_VIPR_ALG4_AZL47227_1_18715_19731_1_2018_02_06_China_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
PEDV_AUSTRIA_L01064_M10_15_03_2015_nsp12_VIPR_ALG4_SNQ28050_1_18715_19731_1_NA_NA_Unknown_PEDV YPDGYFTQGRTTADFSPRSDMERDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
PEDV_14_nsp12_VIPR_ALG4_761662536_18715_19731_1_2011_04_China_Swine_PEDV YPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
TC_PC173_P2_nsp12_VIPR_ALG4_684183318_18703_19719_1_2013_12_USA_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
CHN_SH_2012_5_2012_nsp12_VIPR_ALG4_AVK78140_1_18715_19731_1_2012_02_21_China_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
PEDV_GER_L00799_K11_14_01_2014_nsp12_VIPR_ALG4_SNT95664_1_18715_19731_1_NA_NA_Unknown_PEDV YPDGYFTQGRTTADFSPRSDMERDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
KNU_1904_nsp12_VIPR_ALG4_QNC49739_1_18715_19731_1_2019_01_South_Korea_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
CH_TP_2_2_2018_nsp12_VIPR_ALG4_QCC26580_1_18715_19731_1_2018_China_Swine_PEDV YPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
USA_Oklahoma477_2014_nsp12_VIPR_ALG4_825144888_18670_19686_1_2014_12_12_USA_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
USA_IL_2013_59573_5_nsp12_VIPR_ALG4_874010863_18715_19731_1_2013_12_31_USA_Swine_PEDV YPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
KNU_1406_1_nsp12_VIPR_ALG4_692148234_18715_19731_1_2014_03_South_Korea_Swine_PEDV YPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
USA_Minnesota41_2013_nsp12_VIPR_ALG4_658130323_18680_19696_1_2013_10_14_USA_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
GDS20_nsp12_VIPR_ALG4_QCQ19803_1_18715_19731_1_2012_06_22_China_Swine_PEDV YPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
TC_PC182_P2_nsp12_VIPR_ALG4_684183339_18698_19714_1_2013_12_USA_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
PEDV_ROMANIA_L01330_K25_15_02_2015_nsp12_VIPR_ALG4_SNQ28044_1_18715_19731_1_NA_NA_Unknown_PEDV YPDGYFTQGRTTADFSPRSDMERDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
PC22A_P30_nsp12_VIPR_ALG4_APX55522_1_18705_19721_1_2014_01_01_USA_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
CH_hubei_2016_nsp12_VIPR_ALG4_ART84249_1_18714_19730_1_2016_03_China_Swine_PEDV YPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
CAN_Quebec334_2014_nsp12_VIPR_ALG4_825144874_18670_19686_1_2014_05_14_Canada_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
GDS26_nsp12_VIPR_ALG4_QCQ19827_1_18715_19731_1_2012_09_17_China_Swine_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
EHM_1_JPN_2014_nsp12_VIPR_ALG4_948549137_18657_19673_1_2014_04_Japan_Pig_PEDV HPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGL
:*********************:*************************************
USA_Minnesota78_2013_nsp12_VIPR_ALG4_658130505_18680_19696_1_2013_11_28_USA_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
PEDV_MEX_JAL_04_2017_nsp12_VIPR_ALG4_AVU05388_1_18545_19561_1_2017_02_20_Mexico_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
USA_Missouri102_2013_nsp12_VIPR_ALG4_658130645_18680_19696_1_2013_12_15_USA_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
JSCZ1601_nsp12_VIPR_ALG4_1126499706_18716_19732_1_2016_China_Swine_PEDV HLLISQVRLSCMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
G2_nsp12_VIPR_ALG4_QCT24236_1_18715_19731_1_2016_China_Swine_PEDV HLLISQVRLSCMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
HLJBY_nsp12_VIPR_ALG4_827520734_18691_19707_1_NA_China_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
USA_Tennesse56_2013_nsp12_VIPR_ALG4_658130372_18680_19696_1_2013_11_04_USA_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
PEDV_1C_nsp12_VIPR_ALG4_761662508_18715_19731_1_2012_03_China_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
KNU_141112_S_DEL2_nsp12_VIPR_ALG4_ASA40090_1_18715_19731_1_2016_01_South_Korea_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
GDS29_nsp12_VIPR_ALG4_QCQ19887_1_18715_19731_1_2014_07_11_China_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
CH_SCZJ_2018_nsp12_VIPR_ALG4_AZL47227_1_18715_19731_1_2018_02_06_China_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVCILK
PEDV_AUSTRIA_L01064_M10_15_03_2015_nsp12_VIPR_ALG4_SNQ28050_1_18715_19731_1_NA_NA_Unknown_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYVDNPSSKMVCTYMDLLLDDFVSILK
PEDV_14_nsp12_VIPR_ALG4_761662536_18715_19731_1_2011_04_China_Swine_PEDV HLLISQVRLSCMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
TC_PC173_P2_nsp12_VIPR_ALG4_684183318_18703_19719_1_2013_12_USA_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
CHN_SH_2012_5_2012_nsp12_VIPR_ALG4_AVK78140_1_18715_19731_1_2012_02_21_China_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
PEDV_GER_L00799_K11_14_01_2014_nsp12_VIPR_ALG4_SNT95664_1_18715_19731_1_NA_NA_Unknown_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYVDNPSSKMVCTYMDLLLDDFVSILK
KNU_1904_nsp12_VIPR_ALG4_QNC49739_1_18715_19731_1_2019_01_South_Korea_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
CH_TP_2_2_2018_nsp12_VIPR_ALG4_QCC26580_1_18715_19731_1_2018_China_Swine_PEDV HLLISQVRLSCMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLNEFFTLFK
USA_Oklahoma477_2014_nsp12_VIPR_ALG4_825144888_18670_19686_1_2014_12_12_USA_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
USA_IL_2013_59573_5_nsp12_VIPR_ALG4_874010863_18715_19731_1_2013_12_31_USA_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
KNU_1406_1_nsp12_VIPR_ALG4_692148234_18715_19731_1_2014_03_South_Korea_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
USA_Minnesota41_2013_nsp12_VIPR_ALG4_658130323_18680_19696_1_2013_10_14_USA_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
GDS20_nsp12_VIPR_ALG4_QCQ19803_1_18715_19731_1_2012_06_22_China_Swine_PEDV HLLISQVRLSCMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
TC_PC182_P2_nsp12_VIPR_ALG4_684183339_18698_19714_1_2013_12_USA_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
PEDV_ROMANIA_L01330_K25_15_02_2015_nsp12_VIPR_ALG4_SNQ28044_1_18715_19731_1_NA_NA_Unknown_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYVDNPSSKMVCTYMDLLLDDFVSILK
PC22A_P30_nsp12_VIPR_ALG4_APX55522_1_18705_19721_1_2014_01_01_USA_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
CH_hubei_2016_nsp12_VIPR_ALG4_ART84249_1_18714_19730_1_2016_03_China_Swine_PEDV HLLISQVRLSCMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
CAN_Quebec334_2014_nsp12_VIPR_ALG4_825144874_18670_19686_1_2014_05_14_Canada_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
GDS26_nsp12_VIPR_ALG4_QCQ19827_1_18715_19731_1_2012_09_17_China_Swine_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
EHM_1_JPN_2014_nsp12_VIPR_ALG4_948549137_18657_19673_1_2014_04_Japan_Pig_PEDV HLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILK
*********:*************************.****************::*. ::*
USA_Minnesota78_2013_nsp12_VIPR_ALG4_658130505_18680_19696_1_2013_11_28_USA_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
PEDV_MEX_JAL_04_2017_nsp12_VIPR_ALG4_AVU05388_1_18545_19561_1_2017_02_20_Mexico_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDRKLQTFYPQLQ
USA_Missouri102_2013_nsp12_VIPR_ALG4_658130645_18680_19696_1_2013_12_15_USA_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
JSCZ1601_nsp12_VIPR_ALG4_1126499706_18716_19732_1_2016_China_Swine_PEDV SLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
G2_nsp12_VIPR_ALG4_QCT24236_1_18715_19731_1_2016_China_Swine_PEDV SLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
HLJBY_nsp12_VIPR_ALG4_827520734_18691_19707_1_NA_China_Swine_PEDV SLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
USA_Tennesse56_2013_nsp12_VIPR_ALG4_658130372_18680_19696_1_2013_11_04_USA_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
PEDV_1C_nsp12_VIPR_ALG4_761662508_18715_19731_1_2012_03_China_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
KNU_141112_S_DEL2_nsp12_VIPR_ALG4_ASA40090_1_18715_19731_1_2016_01_South_Korea_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
GDS29_nsp12_VIPR_ALG4_QCQ19887_1_18715_19731_1_2014_07_11_China_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
CH_SCZJ_2018_nsp12_VIPR_ALG4_AZL47227_1_18715_19731_1_2018_02_06_China_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
PEDV_AUSTRIA_L01064_M10_15_03_2015_nsp12_VIPR_ALG4_SNQ28050_1_18715_19731_1_NA_NA_Unknown_PEDV SLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
PEDV_14_nsp12_VIPR_ALG4_761662536_18715_19731_1_2011_04_China_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
TC_PC173_P2_nsp12_VIPR_ALG4_684183318_18703_19719_1_2013_12_USA_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
CHN_SH_2012_5_2012_nsp12_VIPR_ALG4_AVK78140_1_18715_19731_1_2012_02_21_China_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
PEDV_GER_L00799_K11_14_01_2014_nsp12_VIPR_ALG4_SNT95664_1_18715_19731_1_NA_NA_Unknown_PEDV SLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
KNU_1904_nsp12_VIPR_ALG4_QNC49739_1_18715_19731_1_2019_01_South_Korea_Swine_PEDV SLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
CH_TP_2_2_2018_nsp12_VIPR_ALG4_QCC26580_1_18715_19731_1_2018_China_Swine_PEDV SLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
USA_Oklahoma477_2014_nsp12_VIPR_ALG4_825144888_18670_19686_1_2014_12_12_USA_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
USA_IL_2013_59573_5_nsp12_VIPR_ALG4_874010863_18715_19731_1_2013_12_31_USA_Swine_PEDV SLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
KNU_1406_1_nsp12_VIPR_ALG4_692148234_18715_19731_1_2014_03_South_Korea_Swine_PEDV SLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
USA_Minnesota41_2013_nsp12_VIPR_ALG4_658130323_18680_19696_1_2013_10_14_USA_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
GDS20_nsp12_VIPR_ALG4_QCQ19803_1_18715_19731_1_2012_06_22_China_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
TC_PC182_P2_nsp12_VIPR_ALG4_684183339_18698_19714_1_2013_12_USA_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
PEDV_ROMANIA_L01330_K25_15_02_2015_nsp12_VIPR_ALG4_SNQ28044_1_18715_19731_1_NA_NA_Unknown_PEDV SLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
PC22A_P30_nsp12_VIPR_ALG4_APX55522_1_18705_19721_1_2014_01_01_USA_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
CH_hubei_2016_nsp12_VIPR_ALG4_ART84249_1_18714_19730_1_2016_03_China_Swine_PEDV SLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
CAN_Quebec334_2014_nsp12_VIPR_ALG4_825144874_18670_19686_1_2014_05_14_Canada_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
GDS26_nsp12_VIPR_ALG4_QCQ19827_1_18715_19731_1_2012_09_17_China_Swine_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
EHM_1_JPN_2014_nsp12_VIPR_ALG4_948549137_18657_19673_1_2014_04_Japan_Pig_PEDV SLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
****.***********************:**********
>USA_Minnesota78_2013_nsp12_VIPR_ALG4_658130505_18680_19696_1_2013_11_28_USA_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCCATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >PEDV_MEX_JAL_04_2017_nsp12_VIPR_ALG4_AVU05388_1_18545_19561_1_2017_02_20_Mexico_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCCATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCGTAAACTCCAGACATTTTATCCGCAACTTCAG >USA_Missouri102_2013_nsp12_VIPR_ALG4_658130645_18680_19696_1_2013_12_15_USA_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCCATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGACGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >JSCZ1601_nsp12_VIPR_ALG4_1126499706_18716_19732_1_2016_China_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAAAATGCTGTGCTTATGTCACTTACAGCCGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAACGGTGTCGCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAATTCGAGGACTATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTTTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTACATCTACTAATTTCGCAGGTGCGTCTGTCCTGTATGGGTGTGCTTAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCCTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGCACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCGTTGGATTTGAGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >G2_nsp12_VIPR_ALG4_QCT24236_1_18715_19731_1_2016_China_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGTCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTATAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTTACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAAAATGCTGTGCTTATGTCACTTACAGCCGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAATTCGAGGACTATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGATATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTACATCTACTAATTTCGCAGGTGCGTCTGTCCTGTATGGGTGTGCTTAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCCTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGCACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCGTTGGATTTGAGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >HLJBY_nsp12_VIPR_ALG4_827520734_18691_19707_1_NA_China_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCTGAAGGTGAGCTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTCACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTTGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTCTGTAAATATACCGACTTTGAGGGTGACGTTTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAGAATGCTGTGCTTATGTCCCTTACAGCTGTTAAAAAGCTCACTGGCATAAAGTTAACTTATGGCTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACGTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACTATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTTTGTTTATTAACAAGTATGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTACATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTTAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCATGTACTGTTACATATGCTGACAACCCTAGTAGTAAGATGGTTTGCACATATATGGATCTCCTGCTTGACGATTTTGTTAGCATTCTTAAATCTTTGGATTTGAGCGTTGTATCTAAGGTTCATGAAGTTATGGTTGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCACAACTTCAA >USA_Tennesse56_2013_nsp12_VIPR_ALG4_658130372_18680_19696_1_2013_11_04_USA_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCCATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >PEDV_1C_nsp12_VIPR_ALG4_761662508_18715_19731_1_2012_03_China_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCTGAAGGTGAGCTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTCACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAACGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTTTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >KNU_141112_S_DEL2_nsp12_VIPR_ALG4_ASA40090_1_18715_19731_1_2016_01_South_Korea_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCCATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >GDS29_nsp12_VIPR_ALG4_QCQ19887_1_18715_19731_1_2014_07_11_China_Swine_PEDV GGCCTTGAGAACATTGCTTTTAATGTCGTAAAGAAAGGATTCTTTGTTGGTGCTGAAGGTGAGCTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTATTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAACGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTTTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >CH_SCZJ_2018_nsp12_VIPR_ALG4_AZL47227_1_18715_19731_1_2018_02_06_China_Swine_PEDV GGCCTTGAGAACATTGCTTTTAATGTCGTAAAGAAAGGATTCTTTGTTGGTGTTGAAGGTGAGCTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTGGCTTTTGAGTTGTATGCCAAGCGTAAGGTGGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCCAAGTGTGTCATTTGGGACTACGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTTTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACTCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTTAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCTGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTACCCGCAACTTCAG >PEDV_AUSTRIA_L01064_M10_15_03_2015_nsp12_VIPR_ALG4_SNQ28050_1_18715_19731_1_NA_NA_Unknown_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGTTGAAGGTGAGCTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTCATAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTTGTTTGCACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTCTGTAAATATACCGACTTTGAGGGTGACGTTTGCACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTACATTTACACTAGGAAGAACGGCAAGTTCGAGGACTATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGTGACATGGAAAGGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTCGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCTAAAACCACCCTTGGTGGTTTACATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTTAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGTTGATAACCCTAGTAGTAAGATGGTTTGCACGTATATGGATCTCCTTCTTGACGATTTTGTCAGCATTCTTAAATCGTTGGATTTGAGTGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >PEDV_14_nsp12_VIPR_ALG4_761662536_18715_19731_1_2011_04_China_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAAAATGCTGTGCTTATGTCACTTACAGCCGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAATTCGAGGACTATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTACATCTACTAATTTCGCAGGTGCGTCTGTCCTGTATGGGTGTGCTTAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCCTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGCACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCGTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >TC_PC173_P2_nsp12_VIPR_ALG4_684183318_18703_19719_1_2013_12_USA_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCCATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >CHN_SH_2012_5_2012_nsp12_VIPR_ALG4_AVK78140_1_18715_19731_1_2012_02_21_China_Swine_PEDV GGCCTTGAGAACATTGCTTTTAATGTCGTAAAGAAAGGATTCTTTGTTGGTGCTGAAGGTGAGCTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAACGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTTTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >PEDV_GER_L00799_K11_14_01_2014_nsp12_VIPR_ALG4_SNT95664_1_18715_19731_1_NA_NA_Unknown_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGTTGAAGGTGAGCTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTCACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTTGTTTGCACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTCTGTAAATATACCGACTTTGAGGGTGACGTTTGCACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTACATTTACACTAGGAAGAACGGCAAGTTCGAGGACTATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGTGACATGGAAAGGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTCGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCTAAAACCACCCTTGGTGGTTTACATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTTAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGTTGATAACCCTAGTAGTAAGATGGTTTGCACGTATATGGATCTCCTTCTTGACGATTTTGTCAGCATTCTTAAATCGTTGGATTTGAGTGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >KNU_1904_nsp12_VIPR_ALG4_QNC49739_1_18715_19731_1_2019_01_South_Korea_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTCGTTGGTGCCGAAGGTGAACTTCCTGTAGCCGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAAGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCCATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGCACGTATATGGATCTCCTTCTTGACGATTTTGTCAGCATTCTTAAATCGTTGGATTTGAGTGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >CH_TP_2_2_2018_nsp12_VIPR_ALG4_QCC26580_1_18715_19731_1_2018_China_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAAAATGCTGTGCTTATGTCACTTACAGCCGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAACGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAATTCGAGGACTATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTTTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTACATCTACTAATTTCGCAGGTGCGTCTGTCCTGTATGGGTGTGCTTAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCCTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGCACGTATATGGATCTCCTGCTGAACGAATTTTTCACCCTTTTTAAATCGTTGGATTTGAGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >USA_Oklahoma477_2014_nsp12_VIPR_ALG4_825144888_18670_19686_1_2014_12_12_USA_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCCATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >USA_IL_2013_59573_5_nsp12_VIPR_ALG4_874010863_18715_19731_1_2013_12_31_USA_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCTGAAGGTGAGCTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTCACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTTGTTTGCACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTCTGTAAATATACCGACTTTGAGGGTGACGTTTGCACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTACATTTACACTAGGAAGAACGGCAAGTTCGAGGACTATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGTGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTCGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCTAAAACCACCCTTGGTGGTTTACATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTTAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGCACGTATATGGATCTCCTTCTTGACGATTTTGTCAGCATTCTTAAATCGTTGGATTTGAGTGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >KNU_1406_1_nsp12_VIPR_ALG4_692148234_18715_19731_1_2014_03_South_Korea_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCTGAAGGTGAGCTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTCACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTTGTTTGCACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTCTGTAAATATACCGACTTTGAGGGTGACGTTTGCACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTACATTTACACTAGGAAGAACGGCAAGTTCGAGGACTATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGTGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTCGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCTAAAACCACCCTTGGTGGTTTACATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTTAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGCACGTATATGGATCTCCTTCTTGACGATTTTGTCAGCATTCTTAAATCGTTGGATTTGAGTGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >USA_Minnesota41_2013_nsp12_VIPR_ALG4_658130323_18680_19696_1_2013_10_14_USA_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCCATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >GDS20_nsp12_VIPR_ALG4_QCQ19803_1_18715_19731_1_2012_06_22_China_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAAAATGCTGTGCTTATGTCACTTACAGCCGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAATTCGAGGACTATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTACATCTACTAATTTCGCAGGTGCGTCTGTCCTGTATGGGTGTGCTTAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCCTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGCACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCGTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >TC_PC182_P2_nsp12_VIPR_ALG4_684183339_18698_19714_1_2013_12_USA_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCCATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >PEDV_ROMANIA_L01330_K25_15_02_2015_nsp12_VIPR_ALG4_SNQ28044_1_18715_19731_1_NA_NA_Unknown_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGTTGAAGGTGAGCTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTCACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTTGTTTGCACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTCTGTAAATATACCGACTTTGAGGGTGACGTTTGCACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTACATTTACACTAGGAAGAACGGCAAGTTCGAGGACTATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGTGACATGGAAAGGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTCGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCTAAAACCACCCTTGGTGGTTTACATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTTAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGTTGATAACCCTAGTAGTAAGATGGTTTGCACGTATATGGATCTCCTTCTTGACGATTTTGTCAGCATTCTTAAATCGTTGGATTTGAGTGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >PC22A_P30_nsp12_VIPR_ALG4_APX55522_1_18705_19721_1_2014_01_01_USA_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCCATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >CH_hubei_2016_nsp12_VIPR_ALG4_ART84249_1_18714_19730_1_2016_03_China_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAAAATGCTGTGCTTATGTCACTTACAGCCGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAATTCGAGGACTATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGATATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTACATCTACTAATTTCGCAGGTGCGTCTGTCCTGTATGGGTGTGCTTAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCCTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGCACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCGTTGGATTTGAGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >CAN_Quebec334_2014_nsp12_VIPR_ALG4_825144874_18670_19686_1_2014_05_14_Canada_Swine_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCCATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >GDS26_nsp12_VIPR_ALG4_QCQ19827_1_18715_19731_1_2012_09_17_China_Swine_PEDV GGCCTTGAGAACATTGCTTTTAATGTCGTAAAGAAAGGATTCTTTGTTGGTGCTGAAGGTGAGCTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAACGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTTTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCTATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG >EHM_1_JPN_2014_nsp12_VIPR_ALG4_948549137_18657_19673_1_2014_04_Japan_Pig_PEDV GGTCTTGAGAACATTGCTTTCAATGTCGTAAAGAAAGGATCTTTTGTTGGTGCCGAAGGTGAACTTCCTGTAGCTGTGGTTAATGACAAAGTGCTCGTTAGAGATGGTACTGTTGATACTCTTGTTTTTACAAACAAGACATCACTACCCACTAACGTAGCTTTTGAGTTGTATGCCAAGCGTAAGGTAGGACTCACCCCACCCATTACGATCCTACGTAACTTGGGTGTAGTTTGTACATCTAAGTGTGTCATTTGGGACTATGAAGCCGAACGTCCACTTACTACTTTTACAAAGGATGTTTGTAAATATACCGACTTTGAGGGTGACGTCTGTACACTCTTTGATAACAGCATTGTTGGTTCATTAGAGCGATTCTCCATGACCCAAAATGCTGTGCTTATGTCACTTACAGCTGTTAAAAAGCTTACTGGCATAAAGTTAACTTATGGTTATCTTAATGGTGTCCCAGTTAACACACATGAAGATAAACCTTTTACTTGGTATATTTACACTAGGAAGAACGGCAAGTTCGAGGACCATCCTGATGGCTATTTTACCCAAGGTAGAACAACCGCTGATTTTAGCCCTCGTAGCGACATGGAAAAGGACTTCCTAAGTATGGATATGGGTCTGTTTATTAACAAGTACGGACTTGAAGATTACGGCTTTGAGCACGTTGTGTATGGTGATGTTTCAAAAACCACCCTTGGTGGTTTGCATCTACTAATTTCGCAGGTGCGTCTGGCCTGTATGGGTGTGCTCAAAATAGACGAGTTTGTGTCTAGTAATGATAGCACGTTAAAGTCTTGTACTGTTACATATGCTGATAACCCTAGTAGTAAGATGGTTTGTACGTATATGGATCTCCTGCTTGACGATTTTGTCAGCATTCTTAAATCTTTGGATTTGGGCGTTGTATCTAAAGTTCATGAAGTTATGGTCGATTGTAAAATGTGGAGGTGGATGTTGTGGTGTAAGGATCATAAACTCCAGACATTTTATCCGCAACTTCAG
>USA_Minnesota78_2013_nsp12_VIPR_ALG4_658130505_18680_19696_1_2013_11_28_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >PEDV_MEX_JAL_04_2017_nsp12_VIPR_ALG4_AVU05388_1_18545_19561_1_2017_02_20_Mexico_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDRKLQTFYPQLQ >USA_Missouri102_2013_nsp12_VIPR_ALG4_658130645_18680_19696_1_2013_12_15_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >JSCZ1601_nsp12_VIPR_ALG4_1126499706_18716_19732_1_2016_China_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVAVNTHEDKPFTWYIYTRKNGKFEDYPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLSCMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >G2_nsp12_VIPR_ALG4_QCT24236_1_18715_19731_1_2016_China_Swine_PEDV GLENIAFNVVKKGSFVGVEGELPVAVVNDKVLVRDGTVDTLVFINKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDYPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLSCMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >HLJBY_nsp12_VIPR_ALG4_827520734_18691_19707_1_NA_China_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDYPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >USA_Tennesse56_2013_nsp12_VIPR_ALG4_658130372_18680_19696_1_2013_11_04_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >PEDV_1C_nsp12_VIPR_ALG4_761662508_18715_19731_1_2012_03_China_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >KNU_141112_S_DEL2_nsp12_VIPR_ALG4_ASA40090_1_18715_19731_1_2016_01_South_Korea_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >GDS29_nsp12_VIPR_ALG4_QCQ19887_1_18715_19731_1_2014_07_11_China_Swine_PEDV GLENIAFNVVKKGFFVGAEGELPVAVVNDKVLVRDGIVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >CH_SCZJ_2018_nsp12_VIPR_ALG4_AZL47227_1_18715_19731_1_2018_02_06_China_Swine_PEDV GLENIAFNVVKKGFFVGVEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVCILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >PEDV_AUSTRIA_L01064_M10_15_03_2015_nsp12_VIPR_ALG4_SNQ28050_1_18715_19731_1_NA_NA_Unknown_PEDV GLENIAFNVVKKGSFVGVEGELPVAVVNDKVLVRDGTVDTLVFINKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDYPDGYFTQGRTTADFSPRSDMERDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYVDNPSSKMVCTYMDLLLDDFVSILKSLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >PEDV_14_nsp12_VIPR_ALG4_761662536_18715_19731_1_2011_04_China_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDYPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLSCMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >TC_PC173_P2_nsp12_VIPR_ALG4_684183318_18703_19719_1_2013_12_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >CHN_SH_2012_5_2012_nsp12_VIPR_ALG4_AVK78140_1_18715_19731_1_2012_02_21_China_Swine_PEDV GLENIAFNVVKKGFFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >PEDV_GER_L00799_K11_14_01_2014_nsp12_VIPR_ALG4_SNT95664_1_18715_19731_1_NA_NA_Unknown_PEDV GLENIAFNVVKKGSFVGVEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDYPDGYFTQGRTTADFSPRSDMERDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYVDNPSSKMVCTYMDLLLDDFVSILKSLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >KNU_1904_nsp12_VIPR_ALG4_QNC49739_1_18715_19731_1_2019_01_South_Korea_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >CH_TP_2_2_2018_nsp12_VIPR_ALG4_QCC26580_1_18715_19731_1_2018_China_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDYPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLSCMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLNEFFTLFKSLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >USA_Oklahoma477_2014_nsp12_VIPR_ALG4_825144888_18670_19686_1_2014_12_12_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >USA_IL_2013_59573_5_nsp12_VIPR_ALG4_874010863_18715_19731_1_2013_12_31_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDYPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >KNU_1406_1_nsp12_VIPR_ALG4_692148234_18715_19731_1_2014_03_South_Korea_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDYPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >USA_Minnesota41_2013_nsp12_VIPR_ALG4_658130323_18680_19696_1_2013_10_14_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >GDS20_nsp12_VIPR_ALG4_QCQ19803_1_18715_19731_1_2012_06_22_China_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDYPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLSCMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >TC_PC182_P2_nsp12_VIPR_ALG4_684183339_18698_19714_1_2013_12_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >PEDV_ROMANIA_L01330_K25_15_02_2015_nsp12_VIPR_ALG4_SNQ28044_1_18715_19731_1_NA_NA_Unknown_PEDV GLENIAFNVVKKGSFVGVEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDYPDGYFTQGRTTADFSPRSDMERDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYVDNPSSKMVCTYMDLLLDDFVSILKSLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >PC22A_P30_nsp12_VIPR_ALG4_APX55522_1_18705_19721_1_2014_01_01_USA_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >CH_hubei_2016_nsp12_VIPR_ALG4_ART84249_1_18714_19730_1_2016_03_China_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDYPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLSCMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLSVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >CAN_Quebec334_2014_nsp12_VIPR_ALG4_825144874_18670_19686_1_2014_05_14_Canada_Swine_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >GDS26_nsp12_VIPR_ALG4_QCQ19827_1_18715_19731_1_2012_09_17_China_Swine_PEDV GLENIAFNVVKKGFFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ >EHM_1_JPN_2014_nsp12_VIPR_ALG4_948549137_18657_19673_1_2014_04_Japan_Pig_PEDV GLENIAFNVVKKGSFVGAEGELPVAVVNDKVLVRDGTVDTLVFTNKTSLPTNVAFELYAKRKVGLTPPITILRNLGVVCTSKCVIWDYEAERPLTTFTKDVCKYTDFEGDVCTLFDNSIVGSLERFSMTQNAVLMSLTAVKKLTGIKLTYGYLNGVPVNTHEDKPFTWYIYTRKNGKFEDHPDGYFTQGRTTADFSPRSDMEKDFLSMDMGLFINKYGLEDYGFEHVVYGDVSKTTLGGLHLLISQVRLACMGVLKIDEFVSSNDSTLKSCTVTYADNPSSKMVCTYMDLLLDDFVSILKSLDLGVVSKVHEVMVDCKMWRWMLWCKDHKLQTFYPQLQ
Reading sequence file /data//pss_subsets/LZW_nsp12_VIPR_ALG4_672096717_18715_19731_1_2012_02_China_Unknown_PEDV.result/original_alignment/codeml/fasta/LZW_nsp12_VIPR_ALG4_672096717_18715_19731_1_2012_02_China_Unknown_PEDV.result.1
Found 30 sequences of length 1017
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 1.4%
Found 37 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0%100.0%
Using a window size of 80 with k as 3
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 48 polymorphic sites
**p-Value(s)**
----------
NSS: 1.00e-02 (1000 permutations)
Max Chi^2: 2.80e-02 (1000 permutations)
PHI (Permutation): 3.30e-02 (1000 permutations)
PHI (Normal): 2.25e-02
#NEXUS
[ID: 1715927920]
begin taxa;
dimensions ntax=30;
taxlabels
PEDV_AUSTRIA_L01064_M10_15_03_2015_nsp12_VIPR_ALG4_SNQ28050_1_18715_19731_1_NA_NA_Unknown_PEDV
CH_SCZJ_2018_nsp12_VIPR_ALG4_AZL47227_1_18715_19731_1_2018_02_06_China_Swine_PEDV
PEDV_14_nsp12_VIPR_ALG4_761662536_18715_19731_1_2011_04_China_Swine_PEDV
KNU_1904_nsp12_VIPR_ALG4_QNC49739_1_18715_19731_1_2019_01_South_Korea_Swine_PEDV
PEDV_GER_L00799_K11_14_01_2014_nsp12_VIPR_ALG4_SNT95664_1_18715_19731_1_NA_NA_Unknown_PEDV
CH_TP_2_2_2018_nsp12_VIPR_ALG4_QCC26580_1_18715_19731_1_2018_China_Swine_PEDV
USA_Minnesota41_2013_nsp12_VIPR_ALG4_658130323_18680_19696_1_2013_10_14_USA_Swine_PEDV
KNU_1406_1_nsp12_VIPR_ALG4_692148234_18715_19731_1_2014_03_South_Korea_Swine_PEDV
CH_hubei_2016_nsp12_VIPR_ALG4_ART84249_1_18714_19730_1_2016_03_China_Swine_PEDV
PC22A_P30_nsp12_VIPR_ALG4_APX55522_1_18705_19721_1_2014_01_01_USA_Swine_PEDV
JSCZ1601_nsp12_VIPR_ALG4_1126499706_18716_19732_1_2016_China_Swine_PEDV
EHM_1_JPN_2014_nsp12_VIPR_ALG4_948549137_18657_19673_1_2014_04_Japan_Pig_PEDV
PEDV_1C_nsp12_VIPR_ALG4_761662508_18715_19731_1_2012_03_China_Swine_PEDV
USA_Minnesota78_2013_nsp12_VIPR_ALG4_658130505_18680_19696_1_2013_11_28_USA_Swine_PEDV
USA_Missouri102_2013_nsp12_VIPR_ALG4_658130645_18680_19696_1_2013_12_15_USA_Swine_PEDV
PEDV_MEX_JAL_04_2017_nsp12_VIPR_ALG4_AVU05388_1_18545_19561_1_2017_02_20_Mexico_Swine_PEDV
HLJBY_nsp12_VIPR_ALG4_827520734_18691_19707_1_NA_China_Swine_PEDV
G2_nsp12_VIPR_ALG4_QCT24236_1_18715_19731_1_2016_China_Swine_PEDV
USA_Tennesse56_2013_nsp12_VIPR_ALG4_658130372_18680_19696_1_2013_11_04_USA_Swine_PEDV
GDS29_nsp12_VIPR_ALG4_QCQ19887_1_18715_19731_1_2014_07_11_China_Swine_PEDV
TC_PC173_P2_nsp12_VIPR_ALG4_684183318_18703_19719_1_2013_12_USA_Swine_PEDV
CHN_SH_2012_5_2012_nsp12_VIPR_ALG4_AVK78140_1_18715_19731_1_2012_02_21_China_Swine_PEDV
USA_IL_2013_59573_5_nsp12_VIPR_ALG4_874010863_18715_19731_1_2013_12_31_USA_Swine_PEDV
USA_Oklahoma477_2014_nsp12_VIPR_ALG4_825144888_18670_19686_1_2014_12_12_USA_Swine_PEDV
PEDV_ROMANIA_L01330_K25_15_02_2015_nsp12_VIPR_ALG4_SNQ28044_1_18715_19731_1_NA_NA_Unknown_PEDV
GDS20_nsp12_VIPR_ALG4_QCQ19803_1_18715_19731_1_2012_06_22_China_Swine_PEDV
TC_PC182_P2_nsp12_VIPR_ALG4_684183339_18698_19714_1_2013_12_USA_Swine_PEDV
KNU_141112_S_DEL2_nsp12_VIPR_ALG4_ASA40090_1_18715_19731_1_2016_01_South_Korea_Swine_PEDV
GDS26_nsp12_VIPR_ALG4_QCQ19827_1_18715_19731_1_2012_09_17_China_Swine_PEDV
CAN_Quebec334_2014_nsp12_VIPR_ALG4_825144874_18670_19686_1_2014_05_14_Canada_Swine_PEDV
;
end;
begin trees;
translate
1 PEDV_AUSTRIA_L01064_M10_15_03_2015_nsp12_VIPR_ALG4_SNQ28050_1_18715_19731_1_NA_NA_Unknown_PEDV,
2 CH_SCZJ_2018_nsp12_VIPR_ALG4_AZL47227_1_18715_19731_1_2018_02_06_China_Swine_PEDV,
3 PEDV_14_nsp12_VIPR_ALG4_761662536_18715_19731_1_2011_04_China_Swine_PEDV,
4 KNU_1904_nsp12_VIPR_ALG4_QNC49739_1_18715_19731_1_2019_01_South_Korea_Swine_PEDV,
5 PEDV_GER_L00799_K11_14_01_2014_nsp12_VIPR_ALG4_SNT95664_1_18715_19731_1_NA_NA_Unknown_PEDV,
6 CH_TP_2_2_2018_nsp12_VIPR_ALG4_QCC26580_1_18715_19731_1_2018_China_Swine_PEDV,
7 USA_Minnesota41_2013_nsp12_VIPR_ALG4_658130323_18680_19696_1_2013_10_14_USA_Swine_PEDV,
8 KNU_1406_1_nsp12_VIPR_ALG4_692148234_18715_19731_1_2014_03_South_Korea_Swine_PEDV,
9 CH_hubei_2016_nsp12_VIPR_ALG4_ART84249_1_18714_19730_1_2016_03_China_Swine_PEDV,
10 PC22A_P30_nsp12_VIPR_ALG4_APX55522_1_18705_19721_1_2014_01_01_USA_Swine_PEDV,
11 JSCZ1601_nsp12_VIPR_ALG4_1126499706_18716_19732_1_2016_China_Swine_PEDV,
12 EHM_1_JPN_2014_nsp12_VIPR_ALG4_948549137_18657_19673_1_2014_04_Japan_Pig_PEDV,
13 PEDV_1C_nsp12_VIPR_ALG4_761662508_18715_19731_1_2012_03_China_Swine_PEDV,
14 USA_Minnesota78_2013_nsp12_VIPR_ALG4_658130505_18680_19696_1_2013_11_28_USA_Swine_PEDV,
15 USA_Missouri102_2013_nsp12_VIPR_ALG4_658130645_18680_19696_1_2013_12_15_USA_Swine_PEDV,
16 PEDV_MEX_JAL_04_2017_nsp12_VIPR_ALG4_AVU05388_1_18545_19561_1_2017_02_20_Mexico_Swine_PEDV,
17 HLJBY_nsp12_VIPR_ALG4_827520734_18691_19707_1_NA_China_Swine_PEDV,
18 G2_nsp12_VIPR_ALG4_QCT24236_1_18715_19731_1_2016_China_Swine_PEDV,
19 USA_Tennesse56_2013_nsp12_VIPR_ALG4_658130372_18680_19696_1_2013_11_04_USA_Swine_PEDV,
20 GDS29_nsp12_VIPR_ALG4_QCQ19887_1_18715_19731_1_2014_07_11_China_Swine_PEDV,
21 TC_PC173_P2_nsp12_VIPR_ALG4_684183318_18703_19719_1_2013_12_USA_Swine_PEDV,
22 CHN_SH_2012_5_2012_nsp12_VIPR_ALG4_AVK78140_1_18715_19731_1_2012_02_21_China_Swine_PEDV,
23 USA_IL_2013_59573_5_nsp12_VIPR_ALG4_874010863_18715_19731_1_2013_12_31_USA_Swine_PEDV,
24 USA_Oklahoma477_2014_nsp12_VIPR_ALG4_825144888_18670_19686_1_2014_12_12_USA_Swine_PEDV,
25 PEDV_ROMANIA_L01330_K25_15_02_2015_nsp12_VIPR_ALG4_SNQ28044_1_18715_19731_1_NA_NA_Unknown_PEDV,
26 GDS20_nsp12_VIPR_ALG4_QCQ19803_1_18715_19731_1_2012_06_22_China_Swine_PEDV,
27 TC_PC182_P2_nsp12_VIPR_ALG4_684183339_18698_19714_1_2013_12_USA_Swine_PEDV,
28 KNU_141112_S_DEL2_nsp12_VIPR_ALG4_ASA40090_1_18715_19731_1_2016_01_South_Korea_Swine_PEDV,
29 GDS26_nsp12_VIPR_ALG4_QCQ19827_1_18715_19731_1_2012_09_17_China_Swine_PEDV,
30 CAN_Quebec334_2014_nsp12_VIPR_ALG4_825144874_18670_19686_1_2014_05_14_Canada_Swine_PEDV
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:1.214885e-03,5:4.977799e-04,25:5.099773e-04,(((((((2:8.042508e-03,20:1.224594e-03,22:4.902815e-04,29:5.149935e-04)1.000:3.546629e-03,13:1.080304e-03)0.905:3.892441e-03,7:4.861739e-04,10:5.074345e-04,12:5.116191e-04,14:4.935819e-04,15:1.232603e-03,16:1.168851e-03,19:5.007042e-04,21:5.030509e-04,24:5.120084e-04,27:4.993292e-04,28:5.196895e-04,30:5.206107e-04)0.798:2.786995e-03,4:4.377619e-03)0.803:3.476789e-03,((3:5.311620e-04,26:5.063631e-04)0.840:1.172778e-03,(6:5.979199e-03,11:1.304149e-03)0.974:1.899180e-03,(9:5.468519e-04,18:2.799181e-03)0.931:1.222941e-03)1.000:3.926417e-03)1.000:5.281383e-03,17:1.319503e-02)1.000:6.911667e-03,8:5.143780e-04,23:5.013851e-04)1.000:2.636751e-03);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:1.214885e-03,5:4.977799e-04,25:5.099773e-04,(((((((2:8.042508e-03,20:1.224594e-03,22:4.902815e-04,29:5.149935e-04):3.546629e-03,13:1.080304e-03):3.892441e-03,7:4.861739e-04,10:5.074345e-04,12:5.116191e-04,14:4.935819e-04,15:1.232603e-03,16:1.168851e-03,19:5.007042e-04,21:5.030509e-04,24:5.120084e-04,27:4.993292e-04,28:5.196895e-04,30:5.206107e-04):2.786995e-03,4:4.377619e-03):3.476789e-03,((3:5.311620e-04,26:5.063631e-04):1.172778e-03,(6:5.979199e-03,11:1.304149e-03):1.899180e-03,(9:5.468519e-04,18:2.799181e-03):1.222941e-03):3.926417e-03):5.281383e-03,17:1.319503e-02):6.911667e-03,8:5.143780e-04,23:5.013851e-04):2.636751e-03);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1979.62 -2005.41
2 -1977.28 -2004.43
--------------------------------------
TOTAL -1977.88 -2005.04
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.110170 0.000264 0.081013 0.144492 0.109419 1301.54 1344.95 1.000
r(A<->C){all} 0.034502 0.000439 0.001374 0.075541 0.030472 795.21 873.60 1.000
r(A<->G){all} 0.207047 0.002343 0.118096 0.302398 0.203635 759.69 800.57 1.003
r(A<->T){all} 0.043985 0.000347 0.011201 0.080956 0.041569 757.83 833.82 1.000
r(C<->G){all} 0.040611 0.000598 0.001919 0.086256 0.036345 706.68 767.34 1.000
r(C<->T){all} 0.592246 0.003551 0.484503 0.711460 0.593104 534.91 653.19 1.002
r(G<->T){all} 0.081609 0.000787 0.030493 0.135182 0.078374 693.23 803.88 1.000
pi(A){all} 0.266863 0.000188 0.241633 0.294891 0.266647 1194.93 1268.35 1.001
pi(C){all} 0.180152 0.000136 0.157817 0.201506 0.179876 1151.22 1205.06 1.001
pi(G){all} 0.225925 0.000163 0.200594 0.250634 0.225873 1014.69 1068.63 1.000
pi(T){all} 0.327061 0.000204 0.300087 0.354861 0.326824 1027.53 1073.86 1.000
alpha{1,2} 0.124747 0.022632 0.000022 0.331568 0.093349 695.46 978.02 1.000
alpha{3} 2.230032 1.711795 0.275308 4.829825 1.954520 695.54 928.03 1.000
pinvar{all} 0.593504 0.009839 0.397407 0.767350 0.608379 589.66 778.49 1.001
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/LZW_nsp12_VIPR_ALG4_672096717_18715_19731_1_2012_02_China_Unknown_PEDV.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 30 ls = 339
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 14 14 14 14 14 13 | Ser TCT 6 6 6 5 5 6 | Tyr TAT 11 11 11 12 12 13 | Cys TGT 9 9 9 8 8 8
TTC 4 4 4 4 4 5 | TCC 1 1 1 2 2 1 | TAC 3 3 3 3 3 2 | TGC 0 0 0 1 1 1
Leu TTA 3 3 3 4 4 4 | TCA 4 4 4 4 4 4 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 6 6 6 6 5 6 | TCG 1 1 1 2 2 1 | TAG 0 0 0 0 0 0 | Trp TGG 5 5 5 5 5 5
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 13 13 13 14 15 13 | Pro CCT 5 5 5 5 5 5 | His CAT 5 4 5 4 4 4 | Arg CGT 5 6 5 5 5 5
CTC 6 6 6 5 4 6 | CCC 2 2 2 2 2 2 | CAC 1 1 1 1 1 1 | CGC 0 0 0 0 0 0
CTA 5 5 5 5 5 5 | CCA 3 3 3 2 3 4 | Gln CAA 3 3 3 3 3 3 | CGA 1 1 1 1 1 1
CTG 3 3 3 2 3 2 | CCG 1 1 1 1 1 0 | CAG 3 3 3 3 3 3 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 8 8 8 8 8 8 | Thr ACT 10 10 10 10 10 9 | Asn AAT 5 5 5 4 5 5 | Ser AGT 4 4 4 4 4 4
ATC 1 1 1 1 1 1 | ACC 7 7 7 7 7 7 | AAC 9 9 9 10 9 9 | AGC 5 5 5 6 6 6
ATA 2 2 2 2 3 2 | ACA 10 10 10 10 9 11 | Lys AAA 11 11 11 12 12 10 | Arg AGA 2 2 2 2 2 2
Met ATG 11 11 11 11 11 11 | ACG 3 3 3 3 3 3 | AAG 15 15 15 14 14 16 | AGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 17 17 17 17 17 20 | Ala GCT 7 7 7 6 6 8 | Asp GAT 17 17 16 17 18 16 | Gly GGT 15 15 15 15 15 14
GTC 6 6 6 6 7 4 | GCC 4 4 4 4 3 3 | GAC 9 9 10 9 8 10 | GGC 5 5 5 4 4 5
GTA 6 6 6 6 6 5 | GCA 0 0 0 1 0 0 | Glu GAA 8 8 8 8 8 7 | GGA 3 3 3 3 3 3
GTG 7 7 7 7 7 7 | GCG 0 0 0 0 0 0 | GAG 7 7 7 7 7 8 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 14 13 14 15 15 13 | Ser TCT 6 7 6 6 5 7 | Tyr TAT 11 11 11 11 9 11 | Cys TGT 9 9 9 9 9 6
TTC 4 5 4 4 4 5 | TCC 1 0 1 0 1 0 | TAC 3 3 3 3 5 4 | TGC 0 0 0 0 1 3
Leu TTA 3 3 3 3 3 4 | TCA 4 4 4 4 4 3 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 6 6 6 6 6 5 | TCG 1 1 1 1 1 2 | TAG 0 0 0 0 0 0 | Trp TGG 5 5 5 5 5 5
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 13 13 13 13 14 14 | Pro CCT 5 5 5 5 5 5 | His CAT 5 5 5 5 5 4 | Arg CGT 5 5 5 5 5 5
CTC 6 6 6 6 5 6 | CCC 2 2 2 2 2 2 | CAC 1 1 1 1 1 1 | CGC 0 0 0 0 0 0
CTA 5 5 5 5 5 5 | CCA 3 3 3 3 3 3 | Gln CAA 3 3 3 3 3 3 | CGA 1 1 1 1 1 1
CTG 3 3 3 3 3 2 | CCG 1 1 1 1 1 1 | CAG 3 3 3 3 3 3 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 8 8 8 9 8 8 | Thr ACT 10 10 10 9 11 10 | Asn AAT 5 5 5 5 5 5 | Ser AGT 4 4 4 4 4 6
ATC 1 1 1 1 1 1 | ACC 7 7 7 7 6 7 | AAC 9 9 9 9 9 9 | AGC 5 5 5 5 4 4
ATA 2 2 2 2 2 3 | ACA 10 10 10 10 10 9 | Lys AAA 11 12 11 12 11 11 | Arg AGA 2 2 2 2 2 2
Met ATG 11 11 11 11 11 11 | ACG 3 3 3 3 3 3 | AAG 15 14 15 14 15 14 | AGG 2 2 2 2 2 3
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 17 18 17 18 19 20 | Ala GCT 7 8 7 8 7 6 | Asp GAT 17 17 17 17 17 17 | Gly GGT 15 15 15 14 14 15
GTC 6 5 6 5 5 6 | GCC 4 3 4 3 3 3 | GAC 9 9 9 9 9 9 | GGC 5 5 5 6 6 4
GTA 6 6 6 6 4 5 | GCA 0 0 0 0 0 0 | Glu GAA 8 7 8 7 7 7 | GGA 3 3 3 3 3 3
GTG 7 7 7 7 9 7 | GCG 0 0 0 0 0 0 | GAG 7 8 7 8 8 8 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 14 14 15 13 13 15 | Ser TCT 5 6 6 7 5 5 | Tyr TAT 12 11 11 11 11 12 | Cys TGT 8 9 9 6 8 8
TTC 4 4 4 5 5 5 | TCC 2 1 0 0 1 2 | TAC 3 3 3 4 3 3 | TGC 1 0 0 3 1 1
Leu TTA 4 3 3 4 3 4 | TCA 4 4 4 3 4 4 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 5 6 6 5 6 6 | TCG 2 1 1 2 2 2 | TAG 0 0 0 0 0 0 | Trp TGG 5 5 5 5 5 5
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 14 13 13 14 14 13 | Pro CCT 5 5 5 5 5 5 | His CAT 4 5 5 4 5 4 | Arg CGT 5 5 5 5 5 5
CTC 5 6 6 6 6 5 | CCC 2 2 2 2 2 2 | CAC 1 1 1 1 1 1 | CGC 0 0 0 0 0 0
CTA 5 5 5 5 5 5 | CCA 3 3 3 3 3 3 | Gln CAA 3 3 3 3 3 3 | CGA 1 1 1 1 1 1
CTG 3 3 3 2 2 3 | CCG 1 1 1 1 1 1 | CAG 3 3 3 3 3 3 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 8 8 8 8 8 7 | Thr ACT 10 10 10 10 10 10 | Asn AAT 5 5 5 5 5 4 | Ser AGT 4 4 4 6 5 4
ATC 1 1 1 1 1 1 | ACC 7 7 7 7 7 8 | AAC 9 9 9 9 9 11 | AGC 5 5 5 4 5 5
ATA 2 2 2 2 2 2 | ACA 10 10 10 10 10 10 | Lys AAA 12 11 12 11 12 12 | Arg AGA 2 2 2 2 2 2
Met ATG 11 11 11 11 11 11 | ACG 3 3 3 3 3 3 | AAG 14 15 14 14 14 14 | AGG 2 2 2 3 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 17 17 18 20 17 17 | Ala GCT 6 7 8 6 6 6 | Asp GAT 17 17 17 17 17 16 | Gly GGT 15 15 14 15 15 15
GTC 6 6 5 6 6 5 | GCC 4 4 3 3 5 4 | GAC 9 9 9 9 9 8 | GGC 5 5 6 4 4 4
GTA 6 6 6 5 6 6 | GCA 0 0 0 0 0 0 | Glu GAA 8 8 7 7 8 9 | GGA 3 3 3 3 3 3
GTG 7 7 7 7 7 7 | GCG 0 0 0 0 0 0 | GAG 7 7 8 8 7 7 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 14 13 13 14 14 14 | Ser TCT 6 7 7 6 5 6 | Tyr TAT 11 11 11 11 12 11 | Cys TGT 9 6 6 9 8 9
TTC 4 5 5 4 4 4 | TCC 1 0 0 1 2 1 | TAC 3 4 4 3 3 3 | TGC 0 3 3 0 1 0
Leu TTA 3 4 4 3 4 3 | TCA 4 3 3 4 4 4 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 6 5 5 6 5 6 | TCG 1 2 2 1 2 1 | TAG 0 0 0 0 0 0 | Trp TGG 5 5 5 5 5 5
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 13 14 14 13 14 13 | Pro CCT 5 5 5 5 5 5 | His CAT 5 4 4 5 4 5 | Arg CGT 5 5 5 5 5 5
CTC 6 6 6 6 5 6 | CCC 2 2 2 2 2 2 | CAC 1 1 1 1 1 1 | CGC 0 0 0 0 0 0
CTA 5 5 5 5 5 5 | CCA 3 3 3 3 3 3 | Gln CAA 3 3 3 3 3 3 | CGA 1 1 1 1 1 1
CTG 3 2 2 3 3 3 | CCG 1 1 1 1 1 1 | CAG 3 3 3 3 3 3 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 8 8 8 8 8 8 | Thr ACT 10 10 10 10 10 10 | Asn AAT 5 5 5 5 5 5 | Ser AGT 4 6 6 4 4 4
ATC 1 1 1 1 1 1 | ACC 7 7 7 7 7 7 | AAC 9 9 9 9 9 9 | AGC 5 4 4 5 5 5
ATA 2 2 2 2 2 2 | ACA 10 10 10 10 10 10 | Lys AAA 11 11 11 11 12 11 | Arg AGA 2 2 2 2 2 2
Met ATG 11 11 11 11 11 11 | ACG 3 3 3 3 3 3 | AAG 15 15 15 15 14 15 | AGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 17 18 18 17 17 17 | Ala GCT 7 8 8 7 6 7 | Asp GAT 17 17 17 17 17 17 | Gly GGT 15 15 15 15 15 15
GTC 6 6 6 6 6 6 | GCC 4 3 3 4 4 4 | GAC 9 9 9 9 9 9 | GGC 5 4 4 5 5 5
GTA 6 5 5 6 6 6 | GCA 0 0 0 0 0 0 | Glu GAA 8 7 7 8 8 8 | GGA 3 3 3 3 3 3
GTG 7 7 7 7 7 7 | GCG 0 0 0 0 0 0 | GAG 7 8 8 7 7 7 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 13 14 14 14 15 14 | Ser TCT 7 6 5 6 6 6 | Tyr TAT 11 11 12 11 11 11 | Cys TGT 6 9 8 9 9 9
TTC 5 4 4 4 4 4 | TCC 0 1 2 1 0 1 | TAC 4 3 3 3 3 3 | TGC 3 0 1 0 0 0
Leu TTA 4 3 4 3 3 3 | TCA 3 4 4 4 4 4 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 5 6 5 6 6 6 | TCG 2 1 2 1 1 1 | TAG 0 0 0 0 0 0 | Trp TGG 5 5 5 5 5 5
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 14 13 14 13 13 13 | Pro CCT 5 5 5 5 5 5 | His CAT 4 5 4 5 5 5 | Arg CGT 5 5 5 5 5 5
CTC 6 6 5 6 6 6 | CCC 2 2 2 2 2 2 | CAC 1 1 1 1 1 1 | CGC 0 0 0 0 0 0
CTA 5 5 5 5 5 5 | CCA 3 3 3 3 3 3 | Gln CAA 3 3 3 3 3 3 | CGA 1 1 1 1 1 1
CTG 2 3 3 3 3 3 | CCG 1 1 1 1 1 1 | CAG 3 3 3 3 3 3 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 8 8 8 8 8 8 | Thr ACT 10 10 10 10 10 10 | Asn AAT 5 5 5 5 5 5 | Ser AGT 6 4 4 4 4 4
ATC 1 1 1 1 1 1 | ACC 7 7 7 7 7 7 | AAC 9 9 9 9 9 9 | AGC 4 5 6 5 5 5
ATA 2 2 2 2 2 2 | ACA 10 10 10 10 10 10 | Lys AAA 11 11 12 11 12 11 | Arg AGA 2 2 2 2 2 2
Met ATG 11 11 11 11 11 11 | ACG 3 3 3 3 3 3 | AAG 14 15 14 15 14 15 | AGG 3 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 20 17 17 17 18 17 | Ala GCT 6 7 6 7 8 7 | Asp GAT 17 17 18 17 17 17 | Gly GGT 15 15 15 15 14 15
GTC 6 6 6 6 5 6 | GCC 3 4 4 4 3 4 | GAC 9 9 8 9 9 9 | GGC 4 5 4 5 6 5
GTA 5 6 6 6 6 6 | GCA 0 0 0 0 0 0 | Glu GAA 7 8 8 8 7 8 | GGA 3 3 3 3 3 3
GTG 7 7 7 7 7 7 | GCG 0 0 0 0 0 0 | GAG 8 7 7 7 8 7 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C549
position 1: T:0.19764 C:0.16519 A:0.30973 G:0.32743
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.44543 C:0.18584 A:0.17994 G:0.18879
Average T:0.32448 C:0.17994 A:0.26844 G:0.22714
#2: C370
position 1: T:0.19764 C:0.16519 A:0.30973 G:0.32743
position 2: T:0.33038 C:0.18879 A:0.31268 G:0.16814
position 3: T:0.44543 C:0.18584 A:0.17994 G:0.18879
Average T:0.32448 C:0.17994 A:0.26745 G:0.22812
#3: C561
position 1: T:0.19764 C:0.16519 A:0.30973 G:0.32743
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.44248 C:0.18879 A:0.17994 G:0.18879
Average T:0.32350 C:0.18092 A:0.26844 G:0.22714
#4: C212
position 1: T:0.20649 C:0.15634 A:0.31268 G:0.32448
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.43658 C:0.19174 A:0.18584 G:0.18584
Average T:0.32448 C:0.17896 A:0.27139 G:0.22517
#5: C112
position 1: T:0.20354 C:0.16224 A:0.31268 G:0.32153
position 2: T:0.33628 C:0.18289 A:0.31563 G:0.16519
position 3: T:0.44543 C:0.18289 A:0.18584 G:0.18584
Average T:0.32842 C:0.17601 A:0.27139 G:0.22419
#6: C181
position 1: T:0.20354 C:0.15929 A:0.31268 G:0.32448
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.44543 C:0.18584 A:0.17994 G:0.18879
Average T:0.32645 C:0.17797 A:0.26942 G:0.22616
#7: C601
position 1: T:0.19764 C:0.16519 A:0.30973 G:0.32743
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.44543 C:0.18584 A:0.17994 G:0.18879
Average T:0.32448 C:0.17994 A:0.26844 G:0.22714
#8: C316
position 1: T:0.19764 C:0.16519 A:0.30973 G:0.32743
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.45133 C:0.17994 A:0.17994 G:0.18879
Average T:0.32645 C:0.17797 A:0.26844 G:0.22714
#9: C233
position 1: T:0.19764 C:0.16519 A:0.30973 G:0.32743
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.44543 C:0.18584 A:0.17994 G:0.18879
Average T:0.32448 C:0.17994 A:0.26844 G:0.22714
#10: C139
position 1: T:0.19764 C:0.16519 A:0.30973 G:0.32743
position 2: T:0.33628 C:0.18289 A:0.31563 G:0.16519
position 3: T:0.45133 C:0.17994 A:0.17994 G:0.18879
Average T:0.32842 C:0.17601 A:0.26844 G:0.22714
#11: C66
position 1: T:0.20059 C:0.16519 A:0.30678 G:0.32743
position 2: T:0.33628 C:0.18289 A:0.31563 G:0.16519
position 3: T:0.44838 C:0.18289 A:0.17109 G:0.19764
Average T:0.32842 C:0.17699 A:0.26450 G:0.23009
#12: C321
position 1: T:0.20059 C:0.16224 A:0.31268 G:0.32448
position 2: T:0.33923 C:0.17994 A:0.31268 G:0.16814
position 3: T:0.44838 C:0.18879 A:0.17404 G:0.18879
Average T:0.32940 C:0.17699 A:0.26647 G:0.22714
#13: C313
position 1: T:0.20354 C:0.16224 A:0.30973 G:0.32448
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.43953 C:0.18879 A:0.18584 G:0.18584
Average T:0.32448 C:0.17994 A:0.27040 G:0.22517
#14: C423
position 1: T:0.19764 C:0.16519 A:0.30973 G:0.32743
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.44543 C:0.18584 A:0.17994 G:0.18879
Average T:0.32448 C:0.17994 A:0.26844 G:0.22714
#15: C32
position 1: T:0.19764 C:0.16519 A:0.30973 G:0.32743
position 2: T:0.33333 C:0.18584 A:0.31563 G:0.16519
position 3: T:0.45133 C:0.17994 A:0.17994 G:0.18879
Average T:0.32743 C:0.17699 A:0.26844 G:0.22714
#16: C327
position 1: T:0.20059 C:0.16224 A:0.31268 G:0.32448
position 2: T:0.33628 C:0.18289 A:0.31268 G:0.16814
position 3: T:0.44838 C:0.18879 A:0.17404 G:0.18879
Average T:0.32842 C:0.17797 A:0.26647 G:0.22714
#17: C257
position 1: T:0.19764 C:0.16519 A:0.31268 G:0.32448
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.43953 C:0.19174 A:0.18289 G:0.18584
Average T:0.32252 C:0.18191 A:0.27040 G:0.22517
#18: C72
position 1: T:0.21239 C:0.15929 A:0.31268 G:0.31563
position 2: T:0.33038 C:0.19174 A:0.31563 G:0.16224
position 3: T:0.43068 C:0.19174 A:0.18879 G:0.18879
Average T:0.32448 C:0.18092 A:0.27237 G:0.22222
#19: C597
position 1: T:0.19764 C:0.16519 A:0.30973 G:0.32743
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.44543 C:0.18584 A:0.17994 G:0.18879
Average T:0.32448 C:0.17994 A:0.26844 G:0.22714
#20: C453
position 1: T:0.20059 C:0.16224 A:0.31268 G:0.32448
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.44838 C:0.18879 A:0.17404 G:0.18879
Average T:0.32645 C:0.17994 A:0.26745 G:0.22616
#21: C230
position 1: T:0.20059 C:0.16224 A:0.31268 G:0.32448
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.44838 C:0.18879 A:0.17404 G:0.18879
Average T:0.32645 C:0.17994 A:0.26745 G:0.22616
#22: C532
position 1: T:0.19764 C:0.16519 A:0.30973 G:0.32743
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.44543 C:0.18584 A:0.17994 G:0.18879
Average T:0.32448 C:0.17994 A:0.26844 G:0.22714
#23: C130
position 1: T:0.20354 C:0.16224 A:0.30973 G:0.32448
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.43953 C:0.18879 A:0.18584 G:0.18584
Average T:0.32448 C:0.17994 A:0.27040 G:0.22517
#24: C427
position 1: T:0.19764 C:0.16519 A:0.30973 G:0.32743
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.44543 C:0.18584 A:0.17994 G:0.18879
Average T:0.32448 C:0.17994 A:0.26844 G:0.22714
#25: C388
position 1: T:0.20059 C:0.16224 A:0.31268 G:0.32448
position 2: T:0.33628 C:0.18289 A:0.31268 G:0.16814
position 3: T:0.44838 C:0.18879 A:0.17404 G:0.18879
Average T:0.32842 C:0.17797 A:0.26647 G:0.22714
#26: C305
position 1: T:0.19764 C:0.16519 A:0.30973 G:0.32743
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.44543 C:0.18584 A:0.17994 G:0.18879
Average T:0.32448 C:0.17994 A:0.26844 G:0.22714
#27: C78
position 1: T:0.20354 C:0.16224 A:0.31268 G:0.32153
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.44248 C:0.18584 A:0.18584 G:0.18584
Average T:0.32547 C:0.17896 A:0.27139 G:0.22419
#28: C29
position 1: T:0.19764 C:0.16519 A:0.30973 G:0.32743
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.44543 C:0.18584 A:0.17994 G:0.18879
Average T:0.32448 C:0.17994 A:0.26844 G:0.22714
#29: C136
position 1: T:0.19764 C:0.16519 A:0.30973 G:0.32743
position 2: T:0.33333 C:0.18584 A:0.31563 G:0.16519
position 3: T:0.45133 C:0.17994 A:0.17994 G:0.18879
Average T:0.32743 C:0.17699 A:0.26844 G:0.22714
#30: C105
position 1: T:0.19764 C:0.16519 A:0.30973 G:0.32743
position 2: T:0.33038 C:0.18879 A:0.31563 G:0.16519
position 3: T:0.44543 C:0.18584 A:0.17994 G:0.18879
Average T:0.32448 C:0.17994 A:0.26844 G:0.22714
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 417 | Ser S TCT 178 | Tyr Y TAT 336 | Cys C TGT 247
TTC 129 | TCC 27 | TAC 96 | TGC 24
Leu L TTA 102 | TCA 115 | *** * TAA 0 | *** * TGA 0
TTG 171 | TCG 42 | TAG 0 | Trp W TGG 150
------------------------------------------------------------------------------
Leu L CTT 403 | Pro P CCT 150 | His H CAT 137 | Arg R CGT 151
CTC 172 | CCC 60 | CAC 30 | CGC 0
CTA 150 | CCA 90 | Gln Q CAA 90 | CGA 30
CTG 82 | CCG 29 | CAG 90 | CGG 0
------------------------------------------------------------------------------
Ile I ATT 240 | Thr T ACT 299 | Asn N AAT 148 | Ser S AGT 131
ATC 30 | ACC 210 | AAC 273 | AGC 148
ATA 62 | ACA 299 | Lys K AAA 340 | Arg R AGA 60
Met M ATG 330 | ACG 90 | AAG 437 | AGG 63
------------------------------------------------------------------------------
Val V GTT 530 | Ala A GCT 207 | Asp D GAT 509 | Gly G GGT 445
GTC 173 | GCC 109 | GAC 269 | GGC 144
GTA 172 | GCA 1 | Glu E GAA 230 | GGA 90
GTG 212 | GCG 0 | GAG 221 | GGG 0
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.20000 C:0.16362 A:0.31072 G:0.32566
position 2: T:0.33186 C:0.18741 A:0.31524 G:0.16549
position 3: T:0.44523 C:0.18623 A:0.18004 G:0.18850
Average T:0.32570 C:0.17909 A:0.26867 G:0.22655
Model 1: NearlyNeutral (2 categories)
TREE # 1: (12, 16, 25, (((((((11, 10, 15, 29), 8), 22, 26, 30, 1, 3, 2, 7, 14, 19, 24, 9, 28), 17), ((13, 23), (18, 4), (27, 5))), 6), 21, 20)); MP score: 87
lnL(ntime: 41 np: 44): -1897.760478 +0.000000
31..12 31..16 31..25 31..32 32..33 33..34 34..35 35..36 36..37 37..38 38..11 38..10 38..15 38..29 37..8 36..22 36..26 36..30 36..1 36..3 36..2 36..7 36..14 36..19 36..24 36..9 36..28 35..17 34..39 39..40 40..13 40..23 39..41 41..18 41..4 39..42 42..27 42..5 33..6 32..21 32..20
0.003039 0.000004 0.000004 0.009175 0.025859 0.018469 0.012647 0.009384 0.015729 0.012610 0.031429 0.003076 0.000004 0.000004 0.002923 0.000004 0.000004 0.000004 0.000004 0.003075 0.003082 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.015521 0.012544 0.003086 0.000004 0.000004 0.006151 0.022210 0.003121 0.003090 0.000004 0.009306 0.052290 0.000004 0.000004 4.872053 0.907147 0.017124
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.277892
(12: 0.003039, 16: 0.000004, 25: 0.000004, (((((((11: 0.031429, 10: 0.003076, 15: 0.000004, 29: 0.000004): 0.012610, 8: 0.002923): 0.015729, 22: 0.000004, 26: 0.000004, 30: 0.000004, 1: 0.000004, 3: 0.003075, 2: 0.003082, 7: 0.000004, 14: 0.000004, 19: 0.000004, 24: 0.000004, 9: 0.000004, 28: 0.000004): 0.009384, 17: 0.015521): 0.012647, ((13: 0.000004, 23: 0.000004): 0.003086, (18: 0.022210, 4: 0.003121): 0.006151, (27: 0.000004, 5: 0.009306): 0.003090): 0.012544): 0.018469, 6: 0.052290): 0.025859, 21: 0.000004, 20: 0.000004): 0.009175);
(C321: 0.003039, C327: 0.000004, C388: 0.000004, (((((((C66: 0.031429, C139: 0.003076, C32: 0.000004, C136: 0.000004): 0.012610, C316: 0.002923): 0.015729, C532: 0.000004, C305: 0.000004, C105: 0.000004, C549: 0.000004, C561: 0.003075, C370: 0.003082, C601: 0.000004, C423: 0.000004, C597: 0.000004, C427: 0.000004, C233: 0.000004, C29: 0.000004): 0.009384, C257: 0.015521): 0.012647, ((C313: 0.000004, C130: 0.000004): 0.003086, (C72: 0.022210, C212: 0.003121): 0.006151, (C78: 0.000004, C112: 0.009306): 0.003090): 0.012544): 0.018469, C181: 0.052290): 0.025859, C230: 0.000004, C453: 0.000004): 0.009175);
Detailed output identifying parameters
kappa (ts/tv) = 4.87205
MLEs of dN/dS (w) for site classes (K=2)
p: 0.90715 0.09285
w: 0.01712 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.003 761.3 255.7 0.1084 0.0003 0.0030 0.3 0.8
31..16 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
31..25 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
31..32 0.009 761.3 255.7 0.1084 0.0010 0.0092 0.8 2.4
32..33 0.026 761.3 255.7 0.1084 0.0028 0.0259 2.1 6.6
33..34 0.018 761.3 255.7 0.1084 0.0020 0.0185 1.5 4.7
34..35 0.013 761.3 255.7 0.1084 0.0014 0.0127 1.0 3.2
35..36 0.009 761.3 255.7 0.1084 0.0010 0.0094 0.8 2.4
36..37 0.016 761.3 255.7 0.1084 0.0017 0.0158 1.3 4.0
37..38 0.013 761.3 255.7 0.1084 0.0014 0.0126 1.0 3.2
38..11 0.031 761.3 255.7 0.1084 0.0034 0.0315 2.6 8.1
38..10 0.003 761.3 255.7 0.1084 0.0003 0.0031 0.3 0.8
38..15 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
38..29 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
37..8 0.003 761.3 255.7 0.1084 0.0003 0.0029 0.2 0.7
36..22 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
36..26 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
36..30 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
36..1 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
36..3 0.003 761.3 255.7 0.1084 0.0003 0.0031 0.3 0.8
36..2 0.003 761.3 255.7 0.1084 0.0003 0.0031 0.3 0.8
36..7 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
36..14 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
36..19 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
36..24 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
36..9 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
36..28 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
35..17 0.016 761.3 255.7 0.1084 0.0017 0.0156 1.3 4.0
34..39 0.013 761.3 255.7 0.1084 0.0014 0.0126 1.0 3.2
39..40 0.003 761.3 255.7 0.1084 0.0003 0.0031 0.3 0.8
40..13 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
40..23 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
39..41 0.006 761.3 255.7 0.1084 0.0007 0.0062 0.5 1.6
41..18 0.022 761.3 255.7 0.1084 0.0024 0.0223 1.8 5.7
41..4 0.003 761.3 255.7 0.1084 0.0003 0.0031 0.3 0.8
39..42 0.003 761.3 255.7 0.1084 0.0003 0.0031 0.3 0.8
42..27 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
42..5 0.009 761.3 255.7 0.1084 0.0010 0.0093 0.8 2.4
33..6 0.052 761.3 255.7 0.1084 0.0057 0.0524 4.3 13.4
32..21 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
32..20 0.000 761.3 255.7 0.1084 0.0000 0.0000 0.0 0.0
Time used: 2:51
Model 2: PositiveSelection (3 categories)
TREE # 1: (12, 16, 25, (((((((11, 10, 15, 29), 8), 22, 26, 30, 1, 3, 2, 7, 14, 19, 24, 9, 28), 17), ((13, 23), (18, 4), (27, 5))), 6), 21, 20)); MP score: 87
check convergence..
lnL(ntime: 41 np: 46): -1897.170569 +0.000000
31..12 31..16 31..25 31..32 32..33 33..34 34..35 35..36 36..37 37..38 38..11 38..10 38..15 38..29 37..8 36..22 36..26 36..30 36..1 36..3 36..2 36..7 36..14 36..19 36..24 36..9 36..28 35..17 34..39 39..40 40..13 40..23 39..41 41..18 41..4 39..42 42..27 42..5 33..6 32..21 32..20
0.003038 0.000004 0.000004 0.009195 0.026107 0.018750 0.012993 0.009510 0.015993 0.012755 0.031900 0.003110 0.000004 0.000004 0.002956 0.000004 0.000004 0.000004 0.000004 0.003141 0.003147 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.015851 0.012801 0.003151 0.000004 0.000004 0.006284 0.022687 0.003184 0.003156 0.000004 0.009487 0.053052 0.000004 0.000004 4.867706 0.973184 0.000000 0.051807 2.668656
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.282325
(12: 0.003038, 16: 0.000004, 25: 0.000004, (((((((11: 0.031900, 10: 0.003110, 15: 0.000004, 29: 0.000004): 0.012755, 8: 0.002956): 0.015993, 22: 0.000004, 26: 0.000004, 30: 0.000004, 1: 0.000004, 3: 0.003141, 2: 0.003147, 7: 0.000004, 14: 0.000004, 19: 0.000004, 24: 0.000004, 9: 0.000004, 28: 0.000004): 0.009510, 17: 0.015851): 0.012993, ((13: 0.000004, 23: 0.000004): 0.003151, (18: 0.022687, 4: 0.003184): 0.006284, (27: 0.000004, 5: 0.009487): 0.003156): 0.012801): 0.018750, 6: 0.053052): 0.026107, 21: 0.000004, 20: 0.000004): 0.009195);
(C321: 0.003038, C327: 0.000004, C388: 0.000004, (((((((C66: 0.031900, C139: 0.003110, C32: 0.000004, C136: 0.000004): 0.012755, C316: 0.002956): 0.015993, C532: 0.000004, C305: 0.000004, C105: 0.000004, C549: 0.000004, C561: 0.003141, C370: 0.003147, C601: 0.000004, C423: 0.000004, C597: 0.000004, C427: 0.000004, C233: 0.000004, C29: 0.000004): 0.009510, C257: 0.015851): 0.012993, ((C313: 0.000004, C130: 0.000004): 0.003151, (C72: 0.022687, C212: 0.003184): 0.006284, (C78: 0.000004, C112: 0.009487): 0.003156): 0.012801): 0.018750, C181: 0.053052): 0.026107, C230: 0.000004, C453: 0.000004): 0.009195);
Detailed output identifying parameters
kappa (ts/tv) = 4.86771
MLEs of dN/dS (w) for site classes (K=3)
p: 0.97318 0.00000 0.02682
w: 0.05181 1.00000 2.66866
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.003 761.3 255.7 0.1220 0.0004 0.0030 0.3 0.8
31..16 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
31..25 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
31..32 0.009 761.3 255.7 0.1220 0.0011 0.0089 0.8 2.3
32..33 0.026 761.3 255.7 0.1220 0.0031 0.0254 2.4 6.5
33..34 0.019 761.3 255.7 0.1220 0.0022 0.0182 1.7 4.7
34..35 0.013 761.3 255.7 0.1220 0.0015 0.0126 1.2 3.2
35..36 0.010 761.3 255.7 0.1220 0.0011 0.0092 0.9 2.4
36..37 0.016 761.3 255.7 0.1220 0.0019 0.0156 1.4 4.0
37..38 0.013 761.3 255.7 0.1220 0.0015 0.0124 1.2 3.2
38..11 0.032 761.3 255.7 0.1220 0.0038 0.0310 2.9 7.9
38..10 0.003 761.3 255.7 0.1220 0.0004 0.0030 0.3 0.8
38..15 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
38..29 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
37..8 0.003 761.3 255.7 0.1220 0.0004 0.0029 0.3 0.7
36..22 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..26 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..30 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..1 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..3 0.003 761.3 255.7 0.1220 0.0004 0.0031 0.3 0.8
36..2 0.003 761.3 255.7 0.1220 0.0004 0.0031 0.3 0.8
36..7 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..14 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..19 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..24 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..9 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..28 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
35..17 0.016 761.3 255.7 0.1220 0.0019 0.0154 1.4 3.9
34..39 0.013 761.3 255.7 0.1220 0.0015 0.0124 1.2 3.2
39..40 0.003 761.3 255.7 0.1220 0.0004 0.0031 0.3 0.8
40..13 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
40..23 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
39..41 0.006 761.3 255.7 0.1220 0.0007 0.0061 0.6 1.6
41..18 0.023 761.3 255.7 0.1220 0.0027 0.0221 2.0 5.6
41..4 0.003 761.3 255.7 0.1220 0.0004 0.0031 0.3 0.8
39..42 0.003 761.3 255.7 0.1220 0.0004 0.0031 0.3 0.8
42..27 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
42..5 0.009 761.3 255.7 0.1220 0.0011 0.0092 0.9 2.4
33..6 0.053 761.3 255.7 0.1220 0.0063 0.0516 4.8 13.2
32..21 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
32..20 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C549)
Pr(w>1) post mean +- SE for w
18 A 0.998** 2.664
44 T 0.964* 2.574
297 S 0.965* 2.576
305 G 0.958* 2.558
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C549)
Pr(w>1) post mean +- SE for w
18 A 0.805 2.415 +- 1.359
44 T 0.729 2.272 +- 1.400
297 S 0.730 2.276 +- 1.400
305 G 0.710 2.224 +- 1.387
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.373 0.324 0.171 0.076 0.032 0.014 0.006 0.003 0.001 0.001
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.009 0.989
sum of density on p0-p1 = 1.000000
Time used: 7:45
Model 7: beta (10 categories)
TREE # 1: (12, 16, 25, (((((((11, 10, 15, 29), 8), 22, 26, 30, 1, 3, 2, 7, 14, 19, 24, 9, 28), 17), ((13, 23), (18, 4), (27, 5))), 6), 21, 20)); MP score: 87
lnL(ntime: 41 np: 44): -1897.802109 +0.000000
31..12 31..16 31..25 31..32 32..33 33..34 34..35 35..36 36..37 37..38 38..11 38..10 38..15 38..29 37..8 36..22 36..26 36..30 36..1 36..3 36..2 36..7 36..14 36..19 36..24 36..9 36..28 35..17 34..39 39..40 40..13 40..23 39..41 41..18 41..4 39..42 42..27 42..5 33..6 32..21 32..20
0.003039 0.000004 0.000004 0.009177 0.025857 0.018480 0.012637 0.009388 0.015730 0.012609 0.031440 0.003077 0.000004 0.000004 0.002925 0.000004 0.000004 0.000004 0.000004 0.003075 0.003057 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.015524 0.012551 0.003087 0.000004 0.000004 0.006152 0.022238 0.003121 0.003091 0.000004 0.009308 0.052284 0.000004 0.000004 4.904305 0.012726 0.085851
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.277922
(12: 0.003039, 16: 0.000004, 25: 0.000004, (((((((11: 0.031440, 10: 0.003077, 15: 0.000004, 29: 0.000004): 0.012609, 8: 0.002925): 0.015730, 22: 0.000004, 26: 0.000004, 30: 0.000004, 1: 0.000004, 3: 0.003075, 2: 0.003057, 7: 0.000004, 14: 0.000004, 19: 0.000004, 24: 0.000004, 9: 0.000004, 28: 0.000004): 0.009388, 17: 0.015524): 0.012637, ((13: 0.000004, 23: 0.000004): 0.003087, (18: 0.022238, 4: 0.003121): 0.006152, (27: 0.000004, 5: 0.009308): 0.003091): 0.012551): 0.018480, 6: 0.052284): 0.025857, 21: 0.000004, 20: 0.000004): 0.009177);
(C321: 0.003039, C327: 0.000004, C388: 0.000004, (((((((C66: 0.031440, C139: 0.003077, C32: 0.000004, C136: 0.000004): 0.012609, C316: 0.002925): 0.015730, C532: 0.000004, C305: 0.000004, C105: 0.000004, C549: 0.000004, C561: 0.003075, C370: 0.003057, C601: 0.000004, C423: 0.000004, C597: 0.000004, C427: 0.000004, C233: 0.000004, C29: 0.000004): 0.009388, C257: 0.015524): 0.012637, ((C313: 0.000004, C130: 0.000004): 0.003087, (C72: 0.022238, C212: 0.003121): 0.006152, (C78: 0.000004, C112: 0.009308): 0.003091): 0.012551): 0.018480, C181: 0.052284): 0.025857, C230: 0.000004, C453: 0.000004): 0.009177);
Detailed output identifying parameters
kappa (ts/tv) = 4.90431
Parameters in M7 (beta):
p = 0.01273 q = 0.08585
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00001 0.11624 0.99998
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.003 761.1 255.9 0.1116 0.0003 0.0030 0.3 0.8
31..16 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
31..25 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
31..32 0.009 761.1 255.9 0.1116 0.0010 0.0091 0.8 2.3
32..33 0.026 761.1 255.9 0.1116 0.0029 0.0257 2.2 6.6
33..34 0.018 761.1 255.9 0.1116 0.0021 0.0184 1.6 4.7
34..35 0.013 761.1 255.9 0.1116 0.0014 0.0126 1.1 3.2
35..36 0.009 761.1 255.9 0.1116 0.0010 0.0093 0.8 2.4
36..37 0.016 761.1 255.9 0.1116 0.0017 0.0156 1.3 4.0
37..38 0.013 761.1 255.9 0.1116 0.0014 0.0125 1.1 3.2
38..11 0.031 761.1 255.9 0.1116 0.0035 0.0313 2.7 8.0
38..10 0.003 761.1 255.9 0.1116 0.0003 0.0031 0.3 0.8
38..15 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
38..29 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
37..8 0.003 761.1 255.9 0.1116 0.0003 0.0029 0.2 0.7
36..22 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
36..26 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
36..30 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
36..1 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
36..3 0.003 761.1 255.9 0.1116 0.0003 0.0031 0.3 0.8
36..2 0.003 761.1 255.9 0.1116 0.0003 0.0030 0.3 0.8
36..7 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
36..14 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
36..19 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
36..24 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
36..9 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
36..28 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
35..17 0.016 761.1 255.9 0.1116 0.0017 0.0154 1.3 4.0
34..39 0.013 761.1 255.9 0.1116 0.0014 0.0125 1.1 3.2
39..40 0.003 761.1 255.9 0.1116 0.0003 0.0031 0.3 0.8
40..13 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
40..23 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
39..41 0.006 761.1 255.9 0.1116 0.0007 0.0061 0.5 1.6
41..18 0.022 761.1 255.9 0.1116 0.0025 0.0221 1.9 5.7
41..4 0.003 761.1 255.9 0.1116 0.0003 0.0031 0.3 0.8
39..42 0.003 761.1 255.9 0.1116 0.0003 0.0031 0.3 0.8
42..27 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
42..5 0.009 761.1 255.9 0.1116 0.0010 0.0093 0.8 2.4
33..6 0.052 761.1 255.9 0.1116 0.0058 0.0520 4.4 13.3
32..21 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
32..20 0.000 761.1 255.9 0.1116 0.0000 0.0000 0.0 0.0
Time used: 28:32
Model 8: beta&w>1 (11 categories)
TREE # 1: (12, 16, 25, (((((((11, 10, 15, 29), 8), 22, 26, 30, 1, 3, 2, 7, 14, 19, 24, 9, 28), 17), ((13, 23), (18, 4), (27, 5))), 6), 21, 20)); MP score: 87
lnL(ntime: 41 np: 46): -1897.178734 +0.000000
31..12 31..16 31..25 31..32 32..33 33..34 34..35 35..36 36..37 37..38 38..11 38..10 38..15 38..29 37..8 36..22 36..26 36..30 36..1 36..3 36..2 36..7 36..14 36..19 36..24 36..9 36..28 35..17 34..39 39..40 40..13 40..23 39..41 41..18 41..4 39..42 42..27 42..5 33..6 32..21 32..20
0.003038 0.000004 0.000004 0.009195 0.026104 0.018748 0.012990 0.009510 0.015990 0.012754 0.031894 0.003110 0.000004 0.000004 0.002956 0.000004 0.000004 0.000004 0.000004 0.003141 0.003147 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.015848 0.012799 0.003151 0.000004 0.000004 0.006283 0.022684 0.003183 0.003156 0.000004 0.009485 0.053043 0.000004 0.000004 4.868718 0.973293 5.479551 99.000000 2.667925
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.282285
(12: 0.003038, 16: 0.000004, 25: 0.000004, (((((((11: 0.031894, 10: 0.003110, 15: 0.000004, 29: 0.000004): 0.012754, 8: 0.002956): 0.015990, 22: 0.000004, 26: 0.000004, 30: 0.000004, 1: 0.000004, 3: 0.003141, 2: 0.003147, 7: 0.000004, 14: 0.000004, 19: 0.000004, 24: 0.000004, 9: 0.000004, 28: 0.000004): 0.009510, 17: 0.015848): 0.012990, ((13: 0.000004, 23: 0.000004): 0.003151, (18: 0.022684, 4: 0.003183): 0.006283, (27: 0.000004, 5: 0.009485): 0.003156): 0.012799): 0.018748, 6: 0.053043): 0.026104, 21: 0.000004, 20: 0.000004): 0.009195);
(C321: 0.003038, C327: 0.000004, C388: 0.000004, (((((((C66: 0.031894, C139: 0.003110, C32: 0.000004, C136: 0.000004): 0.012754, C316: 0.002956): 0.015990, C532: 0.000004, C305: 0.000004, C105: 0.000004, C549: 0.000004, C561: 0.003141, C370: 0.003147, C601: 0.000004, C423: 0.000004, C597: 0.000004, C427: 0.000004, C233: 0.000004, C29: 0.000004): 0.009510, C257: 0.015848): 0.012990, ((C313: 0.000004, C130: 0.000004): 0.003151, (C72: 0.022684, C212: 0.003183): 0.006283, (C78: 0.000004, C112: 0.009485): 0.003156): 0.012799): 0.018748, C181: 0.053043): 0.026104, C230: 0.000004, C453: 0.000004): 0.009195);
Detailed output identifying parameters
kappa (ts/tv) = 4.86872
Parameters in M8 (beta&w>1):
p0 = 0.97329 p = 5.47955 q = 99.00000
(p1 = 0.02671) w = 2.66792
MLEs of dN/dS (w) for site classes (K=11)
p: 0.09733 0.09733 0.09733 0.09733 0.09733 0.09733 0.09733 0.09733 0.09733 0.09733 0.02671
w: 0.02222 0.03066 0.03660 0.04187 0.04699 0.05232 0.05820 0.06522 0.07470 0.09238 2.66792
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.003 761.3 255.7 0.1220 0.0004 0.0030 0.3 0.8
31..16 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
31..25 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
31..32 0.009 761.3 255.7 0.1220 0.0011 0.0089 0.8 2.3
32..33 0.026 761.3 255.7 0.1220 0.0031 0.0254 2.4 6.5
33..34 0.019 761.3 255.7 0.1220 0.0022 0.0182 1.7 4.7
34..35 0.013 761.3 255.7 0.1220 0.0015 0.0126 1.2 3.2
35..36 0.010 761.3 255.7 0.1220 0.0011 0.0092 0.9 2.4
36..37 0.016 761.3 255.7 0.1220 0.0019 0.0156 1.4 4.0
37..38 0.013 761.3 255.7 0.1220 0.0015 0.0124 1.2 3.2
38..11 0.032 761.3 255.7 0.1220 0.0038 0.0310 2.9 7.9
38..10 0.003 761.3 255.7 0.1220 0.0004 0.0030 0.3 0.8
38..15 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
38..29 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
37..8 0.003 761.3 255.7 0.1220 0.0004 0.0029 0.3 0.7
36..22 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..26 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..30 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..1 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..3 0.003 761.3 255.7 0.1220 0.0004 0.0031 0.3 0.8
36..2 0.003 761.3 255.7 0.1220 0.0004 0.0031 0.3 0.8
36..7 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..14 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..19 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..24 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..9 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
36..28 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
35..17 0.016 761.3 255.7 0.1220 0.0019 0.0154 1.4 3.9
34..39 0.013 761.3 255.7 0.1220 0.0015 0.0124 1.2 3.2
39..40 0.003 761.3 255.7 0.1220 0.0004 0.0031 0.3 0.8
40..13 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
40..23 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
39..41 0.006 761.3 255.7 0.1220 0.0007 0.0061 0.6 1.6
41..18 0.023 761.3 255.7 0.1220 0.0027 0.0221 2.0 5.6
41..4 0.003 761.3 255.7 0.1220 0.0004 0.0031 0.3 0.8
39..42 0.003 761.3 255.7 0.1220 0.0004 0.0031 0.3 0.8
42..27 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
42..5 0.009 761.3 255.7 0.1220 0.0011 0.0092 0.9 2.4
33..6 0.053 761.3 255.7 0.1220 0.0063 0.0516 4.8 13.2
32..21 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
32..20 0.000 761.3 255.7 0.1220 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C549)
Pr(w>1) post mean +- SE for w
18 A 0.998** 2.662
44 T 0.958* 2.560
297 S 0.959* 2.561
305 G 0.951* 2.541
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C549)
Pr(w>1) post mean +- SE for w
18 A 0.904 1.942 +- 0.936
44 T 0.801 1.788 +- 1.024
297 S 0.803 1.790 +- 1.023
305 G 0.787 1.762 +- 1.027
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000
p : 0.999 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.000 0.002 0.014 0.047 0.104 0.182 0.275 0.377
ws: 0.615 0.270 0.081 0.024 0.007 0.002 0.001 0.000 0.000 0.000
Time used: 53:01
Model 1: NearlyNeutral -1897.760478 Model 2: PositiveSelection -1897.170569 Model 7: beta -1897.802109 Model 8: beta&w>1 -1897.178734 Model 2 vs 1 1.179818 Model 8 vs 7 1.246750
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
