--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1064.26 -1085.58
2 -1064.36 -1090.98
--------------------------------------
TOTAL -1064.31 -1090.29
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.072887 0.000329 0.040798 0.110183 0.070536 496.99 530.31 1.000
r(A<->C){all} 0.078614 0.002447 0.000420 0.170553 0.068966 405.24 447.82 1.000
r(A<->G){all} 0.294008 0.006398 0.143120 0.447223 0.288558 198.86 278.94 1.001
r(A<->T){all} 0.061560 0.001285 0.002315 0.128759 0.055260 439.95 496.24 1.000
r(C<->G){all} 0.031229 0.001060 0.000009 0.096940 0.020939 253.56 374.26 1.000
r(C<->T){all} 0.450955 0.009008 0.264936 0.632598 0.450710 161.48 225.98 1.001
r(G<->T){all} 0.083635 0.001758 0.012599 0.167170 0.077388 444.02 465.53 1.000
pi(A){all} 0.257165 0.000310 0.224280 0.292876 0.257084 988.76 1030.35 1.001
pi(C){all} 0.194856 0.000265 0.164043 0.228545 0.194429 1058.72 1059.62 1.000
pi(G){all} 0.252688 0.000298 0.221690 0.288377 0.252725 998.37 1021.43 1.000
pi(T){all} 0.295291 0.000335 0.261460 0.333925 0.295063 983.17 1014.67 1.001
alpha{1,2} 0.331421 0.314820 0.000284 1.384802 0.134910 690.61 737.74 1.000
alpha{3} 1.822717 1.631630 0.000011 4.367303 1.567319 776.62 788.60 1.000
pinvar{all} 0.537554 0.043864 0.094857 0.829878 0.591141 216.58 255.80 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -998.855769
Model 2: PositiveSelection -998.855595
Model 7: beta -998.870996
Model 8: beta&w>1 -998.871168
Model 2 vs 1 .000348
Model 8 vs 7 -.000344
-- Starting log on Thu Nov 17 16:37:28 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/LZW_nsp5_VIPR_ALG4_672096717_11279_11863_1_2012_02_China_Unknown_PEDV.result--
-- Starting log on Thu Nov 17 16:50:54 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/LZW_nsp5_VIPR_ALG4_672096717_11279_11863_1_2012_02_China_Unknown_PEDV.result--
-- Starting log on Fri Nov 18 03:05:45 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/LZW_nsp5_VIPR_ALG4_672096717_11279_11863_1_2012_02_China_Unknown_PEDV.result/gapped_alignment/codeml,LZW_nsp5_VIPR_ALG4_672096717_11279_11863_1_2012_02_China_Unknown_PEDV.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 30 taxa and 585 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C65
Taxon 2 -> C598
Taxon 3 -> C287
Taxon 4 -> C195
Taxon 5 -> C71
Taxon 6 -> C589
Taxon 7 -> C207
Taxon 8 -> C565
Taxon 9 -> C224
Taxon 10 -> C81
Taxon 11 -> C543
Taxon 12 -> C223
Taxon 13 -> C60
Taxon 14 -> C303
Taxon 15 -> C619
Taxon 16 -> C624
Taxon 17 -> C369
Taxon 18 -> C283
Taxon 19 -> C117
Taxon 20 -> C380
Taxon 21 -> C27
Taxon 22 -> C141
Taxon 23 -> C129
Taxon 24 -> C291
Taxon 25 -> C483
Taxon 26 -> C377
Taxon 27 -> C583
Taxon 28 -> C559
Taxon 29 -> C407
Taxon 30 -> C595
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1668740747
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 630889589
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 1877710773
Seed = 587189234
Swapseed = 1668740747
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 7 unique site patterns
Division 2 has 7 unique site patterns
Division 3 has 28 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -1648.322315 -- 82.122948
Chain 2 -- -1660.458468 -- 82.122948
Chain 3 -- -1653.623728 -- 82.122948
Chain 4 -- -1625.232278 -- 82.122948
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -1646.168460 -- 82.122948
Chain 2 -- -1647.682108 -- 82.122948
Chain 3 -- -1658.266760 -- 82.122948
Chain 4 -- -1618.291696 -- 82.122948
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-1648.322] (-1660.458) (-1653.624) (-1625.232) * [-1646.168] (-1647.682) (-1658.267) (-1618.292)
1000 -- (-1163.480) (-1136.019) [-1120.372] (-1159.380) * (-1160.584) (-1139.616) (-1121.236) [-1098.698] -- 0:16:39
2000 -- (-1092.165) (-1100.860) (-1113.241) [-1093.947] * (-1112.481) (-1094.886) [-1091.194] (-1092.268) -- 0:16:38
3000 -- (-1107.382) (-1089.007) (-1086.384) [-1079.108] * (-1096.581) (-1082.143) (-1078.818) [-1091.322] -- 0:16:37
4000 -- [-1081.668] (-1084.846) (-1103.660) (-1083.540) * (-1082.127) (-1089.819) (-1085.804) [-1083.873] -- 0:16:36
5000 -- (-1091.913) (-1080.168) (-1080.444) [-1074.646] * [-1076.356] (-1095.818) (-1076.762) (-1086.722) -- 0:16:35
Average standard deviation of split frequencies: 0.081014
6000 -- [-1073.865] (-1090.450) (-1087.439) (-1084.085) * [-1071.185] (-1090.105) (-1082.640) (-1084.736) -- 0:13:48
7000 -- [-1063.675] (-1076.850) (-1077.005) (-1080.491) * (-1070.993) [-1082.308] (-1077.268) (-1095.648) -- 0:14:11
8000 -- [-1072.159] (-1080.040) (-1075.344) (-1089.534) * (-1079.848) [-1074.257] (-1083.893) (-1091.242) -- 0:14:28
9000 -- (-1094.011) (-1075.768) [-1068.698] (-1086.618) * (-1075.985) [-1073.850] (-1104.116) (-1089.873) -- 0:14:40
10000 -- [-1074.135] (-1078.275) (-1076.718) (-1095.989) * [-1073.843] (-1067.148) (-1107.181) (-1072.851) -- 0:14:51
Average standard deviation of split frequencies: 0.081636
11000 -- [-1075.723] (-1080.668) (-1094.395) (-1084.740) * (-1082.580) [-1062.276] (-1092.353) (-1093.479) -- 0:14:59
12000 -- [-1065.977] (-1081.567) (-1071.559) (-1108.009) * (-1075.288) (-1073.661) (-1110.239) [-1070.720] -- 0:15:05
13000 -- [-1064.672] (-1074.208) (-1080.888) (-1092.031) * (-1087.522) [-1072.513] (-1089.957) (-1079.667) -- 0:15:11
14000 -- (-1079.994) [-1070.555] (-1078.671) (-1133.159) * (-1084.436) [-1067.465] (-1097.451) (-1079.180) -- 0:14:05
15000 -- (-1078.107) (-1070.553) [-1073.071] (-1135.878) * (-1080.355) [-1059.922] (-1086.178) (-1086.289) -- 0:14:13
Average standard deviation of split frequencies: 0.067110
16000 -- (-1077.360) [-1077.307] (-1076.011) (-1129.962) * [-1072.917] (-1076.193) (-1094.020) (-1071.461) -- 0:14:21
17000 -- (-1085.901) (-1085.759) [-1076.582] (-1127.508) * [-1076.368] (-1074.625) (-1084.009) (-1113.722) -- 0:14:27
18000 -- (-1086.979) (-1075.070) [-1072.604] (-1128.270) * [-1073.309] (-1063.503) (-1078.981) (-1094.053) -- 0:14:32
19000 -- [-1071.064] (-1075.376) (-1079.461) (-1123.655) * (-1081.313) [-1077.117] (-1095.696) (-1078.863) -- 0:14:37
20000 -- (-1088.690) (-1077.689) [-1074.691] (-1129.574) * (-1084.436) [-1077.261] (-1086.022) (-1082.841) -- 0:13:53
Average standard deviation of split frequencies: 0.069886
21000 -- (-1086.828) [-1060.771] (-1073.860) (-1134.672) * (-1078.057) [-1079.961] (-1097.268) (-1084.150) -- 0:13:59
22000 -- (-1094.499) (-1072.292) [-1076.398] (-1127.900) * (-1074.632) [-1070.617] (-1086.846) (-1095.512) -- 0:14:04
23000 -- (-1077.882) (-1075.511) [-1076.026] (-1120.374) * (-1084.019) [-1071.751] (-1117.811) (-1082.499) -- 0:14:09
24000 -- (-1091.784) [-1066.106] (-1072.859) (-1126.616) * (-1093.555) [-1072.114] (-1093.873) (-1094.954) -- 0:14:14
25000 -- [-1065.073] (-1074.059) (-1077.576) (-1131.721) * (-1085.321) [-1072.741] (-1081.595) (-1071.108) -- 0:14:18
Average standard deviation of split frequencies: 0.076085
26000 -- (-1071.275) (-1067.062) [-1068.092] (-1124.574) * (-1081.972) [-1068.243] (-1076.010) (-1082.474) -- 0:13:44
27000 -- (-1077.308) [-1069.330] (-1074.765) (-1117.333) * (-1112.605) [-1069.985] (-1065.553) (-1088.474) -- 0:13:48
28000 -- (-1080.362) [-1077.569] (-1081.999) (-1126.169) * (-1114.190) (-1070.118) [-1066.439] (-1078.444) -- 0:13:53
29000 -- [-1075.263] (-1068.189) (-1087.142) (-1117.271) * (-1067.949) [-1073.762] (-1074.730) (-1084.029) -- 0:13:57
30000 -- (-1073.135) [-1069.742] (-1082.587) (-1122.711) * (-1075.444) [-1073.483] (-1078.758) (-1085.149) -- 0:14:00
Average standard deviation of split frequencies: 0.074448
31000 -- (-1074.876) [-1084.867] (-1080.676) (-1127.590) * (-1085.548) [-1063.673] (-1082.962) (-1102.381) -- 0:14:03
32000 -- (-1075.736) [-1070.373] (-1084.731) (-1135.030) * (-1087.094) (-1074.239) [-1076.311] (-1086.698) -- 0:13:36
33000 -- [-1073.452] (-1066.534) (-1088.939) (-1127.574) * (-1074.461) [-1072.586] (-1084.985) (-1075.561) -- 0:13:40
34000 -- [-1069.329] (-1067.900) (-1083.322) (-1130.395) * (-1074.748) [-1068.280] (-1084.810) (-1092.464) -- 0:13:43
35000 -- (-1077.264) [-1078.380] (-1087.313) (-1125.548) * (-1079.730) [-1069.387] (-1088.867) (-1098.863) -- 0:13:47
Average standard deviation of split frequencies: 0.053251
36000 -- (-1090.026) [-1079.409] (-1074.324) (-1133.470) * (-1070.282) [-1070.846] (-1093.496) (-1100.540) -- 0:13:50
37000 -- (-1082.095) (-1069.306) [-1072.788] (-1133.801) * (-1065.764) [-1071.298] (-1092.136) (-1095.696) -- 0:13:52
38000 -- [-1068.537] (-1063.941) (-1077.000) (-1136.124) * (-1075.088) [-1077.058] (-1082.925) (-1087.979) -- 0:13:30
39000 -- (-1080.294) (-1082.270) [-1064.835] (-1130.832) * (-1081.253) [-1081.289] (-1080.755) (-1084.095) -- 0:13:33
40000 -- (-1079.055) [-1071.105] (-1080.098) (-1138.065) * (-1093.153) [-1064.871] (-1092.276) (-1085.220) -- 0:13:36
Average standard deviation of split frequencies: 0.054372
41000 -- (-1071.212) [-1066.517] (-1075.943) (-1128.589) * [-1069.141] (-1081.687) (-1082.796) (-1089.233) -- 0:13:38
42000 -- (-1079.138) [-1067.290] (-1074.477) (-1138.731) * [-1074.216] (-1073.540) (-1076.561) (-1110.764) -- 0:13:41
43000 -- (-1077.080) (-1080.720) [-1066.066] (-1125.460) * [-1076.602] (-1077.908) (-1082.741) (-1077.585) -- 0:13:43
44000 -- (-1086.631) [-1073.288] (-1085.213) (-1138.157) * [-1066.084] (-1075.234) (-1074.876) (-1091.883) -- 0:13:23
45000 -- (-1090.469) (-1083.807) [-1069.817] (-1117.479) * (-1075.783) [-1074.701] (-1088.182) (-1088.828) -- 0:13:26
Average standard deviation of split frequencies: 0.046329
46000 -- (-1070.762) (-1080.473) [-1075.332] (-1137.163) * (-1078.691) [-1070.172] (-1080.975) (-1083.273) -- 0:13:28
47000 -- [-1065.267] (-1078.958) (-1079.168) (-1141.417) * (-1068.134) [-1076.188] (-1096.223) (-1080.573) -- 0:13:31
48000 -- (-1074.617) [-1063.695] (-1078.163) (-1129.268) * [-1071.770] (-1069.996) (-1098.866) (-1079.563) -- 0:13:33
49000 -- (-1080.430) [-1065.970] (-1081.900) (-1136.731) * [-1069.699] (-1081.723) (-1077.574) (-1084.135) -- 0:13:15
50000 -- (-1089.816) (-1066.272) [-1072.120] (-1125.274) * [-1071.590] (-1084.418) (-1123.822) (-1073.032) -- 0:13:18
Average standard deviation of split frequencies: 0.036567
51000 -- (-1086.202) (-1077.326) [-1072.222] (-1126.256) * [-1067.390] (-1080.203) (-1092.836) (-1089.776) -- 0:13:20
52000 -- (-1077.128) (-1078.711) [-1066.447] (-1121.356) * [-1073.697] (-1085.224) (-1080.224) (-1095.188) -- 0:13:22
53000 -- (-1088.589) (-1074.233) [-1068.913] (-1122.680) * (-1071.103) [-1077.324] (-1147.232) (-1078.584) -- 0:13:24
54000 -- (-1080.189) (-1072.348) [-1069.024] (-1130.357) * (-1073.841) [-1071.757] (-1127.293) (-1085.206) -- 0:13:25
55000 -- (-1089.965) [-1069.047] (-1070.566) (-1125.185) * [-1068.203] (-1075.737) (-1144.484) (-1088.580) -- 0:13:27
Average standard deviation of split frequencies: 0.031513
56000 -- (-1074.321) [-1074.176] (-1075.568) (-1127.012) * [-1074.724] (-1079.732) (-1135.778) (-1086.829) -- 0:13:12
57000 -- (-1092.030) [-1072.445] (-1067.813) (-1122.689) * [-1069.569] (-1072.197) (-1132.456) (-1072.962) -- 0:13:14
58000 -- (-1069.052) (-1073.798) [-1071.878] (-1136.337) * (-1082.874) [-1082.722] (-1146.926) (-1075.617) -- 0:13:15
59000 -- (-1067.838) (-1070.526) [-1069.107] (-1136.003) * (-1070.938) [-1069.471] (-1125.291) (-1072.840) -- 0:13:17
60000 -- [-1072.109] (-1079.344) (-1072.346) (-1124.880) * [-1076.184] (-1079.571) (-1126.407) (-1076.386) -- 0:13:19
Average standard deviation of split frequencies: 0.028628
61000 -- (-1078.206) [-1072.477] (-1071.257) (-1127.874) * (-1076.869) [-1079.084] (-1133.063) (-1075.818) -- 0:13:05
62000 -- (-1084.806) [-1068.937] (-1079.264) (-1129.411) * [-1066.536] (-1080.491) (-1143.558) (-1093.207) -- 0:13:06
63000 -- (-1082.436) (-1069.665) [-1073.729] (-1121.634) * [-1062.702] (-1069.697) (-1139.177) (-1085.627) -- 0:13:08
64000 -- (-1089.227) [-1073.708] (-1081.489) (-1127.965) * [-1068.265] (-1075.120) (-1132.238) (-1098.861) -- 0:13:09
65000 -- (-1085.050) [-1065.265] (-1077.632) (-1127.978) * (-1073.806) [-1076.769] (-1127.993) (-1095.224) -- 0:12:56
Average standard deviation of split frequencies: 0.025608
66000 -- (-1074.063) (-1085.173) [-1085.748] (-1129.822) * [-1073.396] (-1075.558) (-1120.646) (-1084.024) -- 0:12:58
67000 -- [-1073.718] (-1090.912) (-1073.422) (-1128.001) * (-1069.259) [-1075.447] (-1129.115) (-1085.571) -- 0:12:59
68000 -- [-1066.977] (-1085.340) (-1085.717) (-1123.155) * [-1075.410] (-1081.080) (-1126.979) (-1094.247) -- 0:12:47
69000 -- (-1084.366) (-1077.179) [-1065.283] (-1123.667) * [-1081.449] (-1084.767) (-1141.913) (-1091.968) -- 0:12:49
70000 -- (-1084.226) (-1080.764) [-1068.660] (-1118.374) * [-1075.909] (-1078.447) (-1142.403) (-1070.498) -- 0:12:37
Average standard deviation of split frequencies: 0.028223
71000 -- (-1074.737) [-1077.536] (-1099.003) (-1125.863) * [-1068.744] (-1079.387) (-1141.236) (-1075.602) -- 0:12:38
72000 -- (-1076.788) [-1074.740] (-1091.924) (-1122.610) * [-1071.916] (-1071.933) (-1124.284) (-1094.531) -- 0:12:27
73000 -- (-1069.756) [-1076.863] (-1074.753) (-1123.974) * (-1075.673) [-1057.721] (-1116.703) (-1071.950) -- 0:12:29
74000 -- (-1080.721) [-1075.459] (-1079.196) (-1128.955) * (-1089.936) (-1077.150) (-1125.660) [-1070.357] -- 0:12:18
75000 -- (-1081.518) [-1068.321] (-1081.504) (-1128.094) * (-1081.251) [-1080.337] (-1141.191) (-1071.962) -- 0:12:20
Average standard deviation of split frequencies: 0.023538
76000 -- (-1079.465) [-1070.430] (-1079.418) (-1138.025) * (-1075.754) (-1073.257) (-1134.851) [-1069.247] -- 0:12:09
77000 -- (-1068.407) [-1069.073] (-1084.373) (-1123.936) * [-1063.088] (-1091.374) (-1136.784) (-1067.950) -- 0:12:11
78000 -- (-1075.163) [-1071.519] (-1086.752) (-1125.282) * (-1072.427) (-1088.434) (-1125.696) [-1069.377] -- 0:12:12
79000 -- (-1067.019) [-1069.306] (-1077.035) (-1137.701) * [-1070.695] (-1081.593) (-1150.998) (-1080.184) -- 0:12:02
80000 -- (-1079.084) [-1065.204] (-1079.194) (-1133.496) * [-1067.337] (-1084.575) (-1140.520) (-1079.411) -- 0:12:04
Average standard deviation of split frequencies: 0.026469
81000 -- (-1083.627) (-1080.538) [-1079.182] (-1151.322) * [-1079.429] (-1074.360) (-1149.784) (-1081.598) -- 0:11:54
82000 -- (-1077.451) (-1085.071) [-1077.833] (-1132.409) * (-1082.329) (-1081.689) (-1121.133) [-1066.529] -- 0:11:56
83000 -- (-1074.809) (-1081.239) [-1078.458] (-1126.670) * (-1063.880) (-1092.632) (-1122.921) [-1075.078] -- 0:11:47
84000 -- (-1074.841) (-1084.624) [-1065.836] (-1117.076) * [-1074.619] (-1080.958) (-1138.839) (-1068.610) -- 0:11:48
85000 -- [-1068.395] (-1085.258) (-1071.608) (-1136.496) * (-1073.381) (-1075.264) (-1134.802) [-1074.812] -- 0:11:39
Average standard deviation of split frequencies: 0.025676
86000 -- (-1074.812) [-1080.739] (-1078.233) (-1124.473) * (-1085.009) (-1071.103) (-1129.850) [-1069.343] -- 0:11:41
87000 -- [-1075.885] (-1082.509) (-1073.740) (-1130.776) * (-1077.886) (-1071.493) (-1119.474) [-1071.208] -- 0:11:32
88000 -- [-1078.719] (-1079.122) (-1067.829) (-1127.949) * (-1086.403) (-1082.832) (-1123.658) [-1073.198] -- 0:11:34
89000 -- (-1072.076) [-1071.493] (-1079.573) (-1132.515) * (-1080.272) (-1071.744) (-1137.010) [-1074.711] -- 0:11:25
90000 -- (-1067.127) [-1071.007] (-1081.823) (-1118.189) * (-1078.057) [-1066.281] (-1116.652) (-1066.550) -- 0:11:27
Average standard deviation of split frequencies: 0.032351
91000 -- (-1071.179) [-1070.263] (-1088.788) (-1132.346) * (-1076.941) (-1085.254) (-1129.788) [-1071.472] -- 0:11:29
92000 -- (-1073.814) [-1066.168] (-1072.732) (-1127.088) * (-1078.316) (-1072.688) (-1126.771) [-1069.017] -- 0:11:21
93000 -- (-1071.584) (-1068.116) [-1062.309] (-1131.642) * (-1074.735) (-1073.864) (-1133.047) [-1074.533] -- 0:11:22
94000 -- (-1088.449) [-1070.902] (-1067.428) (-1133.313) * [-1072.650] (-1085.408) (-1137.583) (-1069.487) -- 0:11:14
95000 -- (-1087.904) (-1088.494) [-1067.210] (-1130.676) * (-1091.863) (-1090.781) (-1140.090) [-1060.764] -- 0:11:16
Average standard deviation of split frequencies: 0.034093
96000 -- (-1094.340) (-1089.471) [-1073.895] (-1133.313) * [-1072.423] (-1085.344) (-1128.448) (-1070.629) -- 0:11:08
97000 -- (-1094.284) [-1077.564] (-1072.793) (-1117.813) * (-1071.110) (-1084.161) (-1132.813) [-1073.109] -- 0:11:10
98000 -- (-1085.989) [-1071.528] (-1072.335) (-1132.478) * [-1068.305] (-1087.782) (-1119.590) (-1062.942) -- 0:11:02
99000 -- (-1069.911) (-1086.739) [-1065.637] (-1125.623) * [-1066.771] (-1075.868) (-1129.665) (-1077.054) -- 0:11:04
100000 -- (-1082.062) [-1085.538] (-1071.873) (-1118.178) * (-1073.385) (-1068.691) (-1127.161) [-1070.306] -- 0:10:57
Average standard deviation of split frequencies: 0.037876
101000 -- [-1070.785] (-1079.015) (-1085.369) (-1133.604) * (-1079.951) (-1082.649) (-1126.389) [-1082.481] -- 0:10:58
102000 -- (-1084.053) (-1073.833) [-1076.887] (-1124.900) * (-1081.520) (-1082.219) (-1129.441) [-1072.118] -- 0:11:00
103000 -- (-1077.292) (-1071.740) [-1073.990] (-1126.986) * (-1077.012) (-1077.055) (-1124.978) [-1068.437] -- 0:11:01
104000 -- (-1087.866) [-1069.809] (-1083.172) (-1135.023) * (-1089.145) (-1064.573) (-1129.513) [-1064.848] -- 0:10:54
105000 -- (-1084.009) [-1075.146] (-1077.157) (-1121.631) * (-1076.777) (-1096.822) (-1134.665) [-1073.228] -- 0:10:56
Average standard deviation of split frequencies: 0.037450
106000 -- (-1073.637) [-1076.326] (-1080.676) (-1129.236) * [-1075.870] (-1076.235) (-1131.728) (-1074.275) -- 0:10:57
107000 -- (-1072.107) [-1075.433] (-1083.468) (-1116.499) * [-1077.275] (-1074.761) (-1130.767) (-1092.670) -- 0:10:59
108000 -- (-1074.563) [-1081.242] (-1081.608) (-1131.194) * (-1100.240) [-1078.952] (-1130.491) (-1068.946) -- 0:11:00
109000 -- (-1076.775) [-1071.774] (-1093.728) (-1125.637) * (-1076.029) (-1085.291) (-1148.842) [-1077.025] -- 0:10:53
110000 -- (-1082.504) [-1072.357] (-1083.217) (-1128.882) * (-1085.310) [-1074.128] (-1129.264) (-1073.443) -- 0:10:55
Average standard deviation of split frequencies: 0.041252
111000 -- (-1094.137) [-1072.961] (-1078.532) (-1121.719) * [-1078.123] (-1070.933) (-1131.477) (-1067.892) -- 0:10:56
112000 -- (-1073.265) [-1075.945] (-1085.216) (-1127.653) * (-1079.552) (-1075.012) (-1134.225) [-1074.269] -- 0:10:58
113000 -- (-1073.036) (-1082.446) [-1065.458] (-1134.506) * (-1082.736) (-1072.204) (-1126.082) [-1069.495] -- 0:10:59
114000 -- (-1077.279) [-1085.081] (-1073.919) (-1128.648) * (-1091.891) [-1067.681] (-1125.173) (-1083.257) -- 0:10:52
115000 -- [-1065.856] (-1079.478) (-1075.036) (-1132.819) * (-1093.895) [-1067.168] (-1125.234) (-1072.414) -- 0:10:54
Average standard deviation of split frequencies: 0.039650
116000 -- (-1070.509) [-1073.857] (-1074.570) (-1144.645) * (-1087.391) [-1078.111] (-1120.326) (-1068.097) -- 0:10:55
117000 -- [-1071.103] (-1082.696) (-1072.151) (-1125.345) * (-1084.661) [-1076.870] (-1128.668) (-1078.887) -- 0:10:56
118000 -- [-1065.261] (-1084.959) (-1065.096) (-1141.284) * (-1080.181) [-1074.595] (-1124.137) (-1083.553) -- 0:10:57
119000 -- [-1066.884] (-1092.722) (-1088.275) (-1135.342) * (-1086.070) (-1079.508) (-1129.437) [-1072.521] -- 0:10:58
120000 -- (-1073.610) [-1071.864] (-1084.370) (-1137.161) * (-1085.913) [-1063.587] (-1125.127) (-1081.570) -- 0:10:52
Average standard deviation of split frequencies: 0.038871
121000 -- [-1070.705] (-1083.723) (-1080.611) (-1129.401) * (-1082.275) [-1068.057] (-1121.659) (-1078.220) -- 0:10:53
122000 -- [-1076.777] (-1076.762) (-1075.327) (-1136.023) * (-1063.721) (-1088.301) (-1125.588) [-1072.425] -- 0:10:54
123000 -- (-1081.075) (-1100.764) [-1065.787] (-1126.695) * (-1083.651) (-1081.530) (-1137.929) [-1077.185] -- 0:10:55
124000 -- (-1069.330) (-1093.893) [-1068.981] (-1125.586) * (-1084.296) [-1083.695] (-1119.789) (-1072.293) -- 0:10:57
125000 -- (-1072.472) (-1072.813) [-1074.087] (-1130.773) * (-1087.922) (-1079.610) (-1140.197) [-1074.589] -- 0:10:58
Average standard deviation of split frequencies: 0.039016
126000 -- [-1076.665] (-1072.443) (-1088.937) (-1126.279) * (-1085.460) (-1084.130) (-1132.155) [-1072.163] -- 0:10:52
127000 -- (-1070.463) (-1070.364) [-1073.046] (-1134.152) * (-1093.576) (-1078.565) (-1117.211) [-1066.597] -- 0:10:53
128000 -- (-1079.463) (-1078.934) [-1077.624] (-1135.119) * (-1081.324) [-1064.866] (-1130.598) (-1071.923) -- 0:10:54
129000 -- [-1072.259] (-1078.394) (-1072.038) (-1123.925) * (-1082.147) (-1081.978) (-1140.629) [-1072.679] -- 0:10:54
130000 -- [-1073.932] (-1084.899) (-1076.146) (-1125.465) * (-1081.333) (-1075.692) (-1152.554) [-1072.784] -- 0:10:55
Average standard deviation of split frequencies: 0.037216
131000 -- (-1079.583) [-1066.642] (-1076.581) (-1126.150) * [-1080.040] (-1076.447) (-1132.916) (-1073.516) -- 0:10:56
132000 -- (-1088.100) [-1063.177] (-1073.092) (-1122.387) * (-1086.484) (-1073.283) (-1136.317) [-1068.679] -- 0:10:57
133000 -- [-1068.666] (-1088.538) (-1075.553) (-1136.459) * (-1087.670) (-1068.703) (-1134.135) [-1070.582] -- 0:10:51
134000 -- [-1067.036] (-1081.438) (-1070.186) (-1123.767) * (-1074.076) [-1072.186] (-1133.097) (-1078.751) -- 0:10:52
135000 -- (-1086.859) (-1086.954) [-1064.742] (-1127.153) * (-1085.703) [-1066.909] (-1132.400) (-1071.501) -- 0:10:53
Average standard deviation of split frequencies: 0.039995
136000 -- (-1091.412) (-1082.658) [-1067.365] (-1130.082) * (-1090.233) (-1090.067) (-1137.489) [-1086.083] -- 0:10:54
137000 -- (-1102.043) (-1084.549) [-1073.069] (-1147.817) * (-1079.499) [-1071.275] (-1129.525) (-1086.319) -- 0:10:55
138000 -- (-1087.884) (-1093.264) [-1067.036] (-1137.765) * (-1082.526) [-1065.666] (-1136.605) (-1074.777) -- 0:10:55
139000 -- (-1079.513) (-1079.867) [-1060.517] (-1147.890) * (-1071.590) [-1068.050] (-1133.898) (-1081.447) -- 0:10:56
140000 -- (-1090.597) [-1077.463] (-1072.805) (-1142.679) * (-1073.622) [-1078.247] (-1117.925) (-1084.755) -- 0:10:51
Average standard deviation of split frequencies: 0.041145
141000 -- (-1087.549) [-1071.943] (-1077.181) (-1139.901) * (-1075.449) (-1075.987) (-1131.138) [-1075.405] -- 0:10:51
142000 -- (-1081.470) (-1069.689) [-1080.850] (-1144.435) * (-1076.004) [-1072.583] (-1119.455) (-1078.308) -- 0:10:52
143000 -- (-1089.313) [-1073.121] (-1094.311) (-1135.247) * (-1083.312) (-1088.829) (-1121.021) [-1073.369] -- 0:10:53
144000 -- [-1073.432] (-1090.596) (-1080.318) (-1143.634) * (-1074.777) [-1071.719] (-1115.097) (-1085.283) -- 0:10:53
145000 -- (-1076.557) (-1079.349) [-1076.938] (-1135.327) * [-1074.900] (-1085.201) (-1142.238) (-1082.722) -- 0:10:54
Average standard deviation of split frequencies: 0.039015
146000 -- (-1082.145) (-1083.318) [-1077.173] (-1134.461) * [-1065.019] (-1076.174) (-1124.520) (-1077.423) -- 0:10:55
147000 -- (-1071.577) (-1086.660) [-1077.284] (-1136.425) * (-1078.221) (-1095.795) (-1131.852) [-1072.680] -- 0:10:55
148000 -- (-1074.608) (-1091.589) [-1081.996] (-1125.645) * [-1070.574] (-1090.663) (-1128.375) (-1077.990) -- 0:10:50
149000 -- (-1102.841) (-1077.084) [-1076.198] (-1123.923) * [-1078.454] (-1093.468) (-1135.869) (-1071.185) -- 0:10:51
150000 -- (-1079.785) [-1071.980] (-1075.482) (-1126.732) * [-1070.097] (-1071.546) (-1128.862) (-1070.601) -- 0:10:51
Average standard deviation of split frequencies: 0.037545
151000 -- (-1079.207) (-1070.225) [-1073.859] (-1120.642) * (-1076.340) (-1077.138) (-1122.077) [-1073.610] -- 0:10:52
152000 -- (-1071.302) (-1079.677) [-1073.108] (-1135.952) * (-1076.033) (-1084.609) (-1131.712) [-1075.231] -- 0:10:52
153000 -- [-1065.474] (-1080.479) (-1080.792) (-1122.616) * [-1070.676] (-1079.902) (-1138.886) (-1086.549) -- 0:10:53
154000 -- (-1076.756) [-1090.694] (-1075.800) (-1125.351) * [-1071.205] (-1085.654) (-1126.451) (-1087.094) -- 0:10:53
155000 -- (-1086.151) (-1080.064) [-1074.452] (-1133.636) * [-1074.409] (-1079.129) (-1137.710) (-1075.626) -- 0:10:54
Average standard deviation of split frequencies: 0.040264
156000 -- (-1082.962) (-1080.263) [-1071.241] (-1124.572) * [-1073.175] (-1091.942) (-1150.454) (-1076.403) -- 0:10:49
157000 -- (-1086.254) (-1084.090) [-1071.457] (-1139.027) * (-1066.589) (-1079.672) (-1152.019) [-1070.373] -- 0:10:49
158000 -- (-1074.677) (-1090.189) [-1069.559] (-1134.056) * [-1069.018] (-1087.705) (-1127.528) (-1078.819) -- 0:10:50
159000 -- (-1084.508) (-1087.086) [-1067.199] (-1126.877) * (-1070.046) (-1081.995) (-1134.266) [-1074.050] -- 0:10:50
160000 -- (-1074.593) (-1079.388) [-1065.793] (-1118.484) * [-1068.165] (-1080.457) (-1133.461) (-1072.693) -- 0:10:51
Average standard deviation of split frequencies: 0.040150
161000 -- [-1069.222] (-1082.040) (-1085.901) (-1133.995) * (-1080.238) (-1071.899) (-1140.506) [-1069.278] -- 0:10:51
162000 -- (-1080.966) (-1078.742) [-1072.021] (-1133.391) * [-1073.464] (-1072.814) (-1128.858) (-1083.104) -- 0:10:51
163000 -- (-1085.909) [-1075.372] (-1076.117) (-1144.504) * (-1070.055) (-1076.497) (-1140.127) [-1070.220] -- 0:10:47
164000 -- (-1077.016) (-1076.712) [-1070.521] (-1131.300) * (-1080.142) [-1071.949] (-1139.535) (-1075.708) -- 0:10:47
165000 -- (-1078.103) (-1081.105) [-1072.205] (-1144.350) * [-1073.730] (-1069.912) (-1130.182) (-1087.440) -- 0:10:47
Average standard deviation of split frequencies: 0.040995
166000 -- (-1080.567) [-1080.615] (-1079.748) (-1123.791) * [-1073.532] (-1086.890) (-1133.703) (-1072.468) -- 0:10:48
167000 -- [-1066.313] (-1073.922) (-1069.871) (-1131.309) * [-1074.533] (-1073.093) (-1132.166) (-1081.440) -- 0:10:48
168000 -- [-1079.258] (-1077.944) (-1074.486) (-1142.799) * [-1073.777] (-1078.121) (-1126.632) (-1070.070) -- 0:10:43
169000 -- [-1072.521] (-1073.979) (-1071.357) (-1125.072) * [-1067.578] (-1077.581) (-1125.237) (-1076.145) -- 0:10:44
170000 -- (-1072.841) (-1070.087) [-1062.983] (-1130.954) * [-1067.252] (-1073.320) (-1123.809) (-1085.851) -- 0:10:44
Average standard deviation of split frequencies: 0.036805
171000 -- (-1088.828) (-1080.184) [-1074.755] (-1126.631) * [-1075.751] (-1076.438) (-1115.252) (-1072.190) -- 0:10:44
172000 -- (-1080.822) (-1075.586) [-1066.221] (-1131.682) * [-1076.578] (-1094.464) (-1120.868) (-1072.260) -- 0:10:45
173000 -- (-1077.359) (-1090.646) [-1065.840] (-1121.965) * [-1072.229] (-1068.802) (-1129.864) (-1080.758) -- 0:10:40
174000 -- [-1067.176] (-1093.910) (-1076.387) (-1133.908) * (-1077.503) (-1084.950) (-1132.544) [-1085.076] -- 0:10:40
175000 -- (-1078.000) (-1082.354) [-1063.081] (-1130.188) * [-1074.019] (-1069.588) (-1124.172) (-1095.484) -- 0:10:41
Average standard deviation of split frequencies: 0.036537
176000 -- (-1085.640) (-1076.953) [-1076.560] (-1132.745) * (-1084.653) [-1075.214] (-1133.493) (-1093.543) -- 0:10:41
177000 -- (-1077.918) (-1077.647) [-1073.763] (-1125.881) * [-1073.687] (-1088.346) (-1121.400) (-1080.262) -- 0:10:41
178000 -- (-1069.086) [-1065.873] (-1070.130) (-1133.163) * (-1085.258) [-1073.456] (-1123.252) (-1085.734) -- 0:10:41
179000 -- (-1082.803) (-1082.666) [-1074.607] (-1131.545) * (-1092.899) [-1070.062] (-1130.557) (-1085.885) -- 0:10:37
180000 -- [-1066.315] (-1072.281) (-1071.745) (-1131.035) * (-1073.368) [-1074.630] (-1121.772) (-1079.321) -- 0:10:37
Average standard deviation of split frequencies: 0.036008
181000 -- (-1074.907) [-1070.623] (-1075.929) (-1119.781) * (-1073.462) (-1078.522) (-1136.258) [-1066.764] -- 0:10:38
182000 -- (-1066.761) [-1070.610] (-1081.730) (-1137.740) * [-1065.744] (-1092.960) (-1120.973) (-1099.336) -- 0:10:38
183000 -- (-1077.888) (-1084.441) [-1070.575] (-1147.429) * [-1068.847] (-1078.500) (-1128.231) (-1087.754) -- 0:10:38
184000 -- (-1069.125) (-1075.194) [-1070.220] (-1133.011) * [-1064.575] (-1081.854) (-1117.758) (-1079.915) -- 0:10:38
185000 -- (-1087.868) (-1083.671) [-1066.944] (-1135.954) * [-1066.756] (-1090.722) (-1130.840) (-1080.373) -- 0:10:34
Average standard deviation of split frequencies: 0.036349
186000 -- (-1075.789) (-1073.900) [-1073.729] (-1121.112) * [-1069.392] (-1078.313) (-1125.400) (-1081.081) -- 0:10:34
187000 -- (-1065.080) (-1089.827) [-1075.431] (-1130.217) * [-1066.858] (-1079.141) (-1122.197) (-1082.923) -- 0:10:34
188000 -- (-1074.909) (-1069.633) [-1071.192] (-1125.305) * (-1070.770) (-1065.773) (-1129.710) [-1068.839] -- 0:10:34
189000 -- (-1078.285) (-1093.273) [-1074.955] (-1127.889) * (-1081.954) (-1074.541) (-1126.696) [-1072.814] -- 0:10:35
190000 -- (-1066.578) (-1082.390) [-1075.917] (-1135.538) * (-1068.962) (-1082.796) (-1121.807) [-1073.374] -- 0:10:30
Average standard deviation of split frequencies: 0.037271
191000 -- (-1081.503) [-1072.993] (-1068.698) (-1132.061) * (-1083.516) (-1076.051) (-1137.382) [-1070.305] -- 0:10:31
192000 -- (-1076.188) (-1080.063) [-1071.398] (-1117.490) * (-1076.298) [-1067.879] (-1126.707) (-1071.773) -- 0:10:31
193000 -- [-1079.122] (-1078.855) (-1073.056) (-1128.304) * [-1069.522] (-1065.684) (-1133.531) (-1085.707) -- 0:10:31
194000 -- (-1069.750) (-1073.114) [-1071.032] (-1128.379) * [-1070.969] (-1089.559) (-1132.861) (-1093.724) -- 0:10:31
195000 -- (-1071.601) (-1075.776) [-1066.971] (-1127.680) * (-1074.918) [-1075.688] (-1137.396) (-1091.936) -- 0:10:31
Average standard deviation of split frequencies: 0.036520
196000 -- (-1080.222) (-1076.313) [-1070.075] (-1128.163) * [-1078.596] (-1081.952) (-1131.239) (-1084.485) -- 0:10:27
197000 -- (-1066.474) (-1077.920) [-1067.734] (-1130.394) * (-1078.667) [-1065.418] (-1134.043) (-1091.267) -- 0:10:27
198000 -- [-1068.408] (-1103.826) (-1079.764) (-1127.120) * [-1068.736] (-1074.423) (-1128.652) (-1079.219) -- 0:10:27
199000 -- (-1072.944) (-1096.491) [-1072.067] (-1131.584) * (-1082.602) [-1079.753] (-1153.547) (-1080.216) -- 0:10:27
200000 -- [-1068.318] (-1106.231) (-1079.343) (-1132.802) * (-1074.474) (-1073.590) (-1139.982) [-1083.886] -- 0:10:28
Average standard deviation of split frequencies: 0.035619
201000 -- [-1066.767] (-1083.016) (-1075.973) (-1121.601) * (-1066.072) (-1083.813) (-1128.371) [-1072.271] -- 0:10:24
202000 -- [-1072.019] (-1080.095) (-1081.574) (-1125.724) * (-1079.084) [-1066.089] (-1131.525) (-1072.201) -- 0:10:24
203000 -- (-1079.463) [-1065.808] (-1082.874) (-1127.933) * (-1082.696) (-1071.637) (-1117.049) [-1072.553] -- 0:10:24
204000 -- [-1080.090] (-1069.206) (-1078.962) (-1127.825) * (-1080.707) [-1067.719] (-1133.820) (-1078.829) -- 0:10:24
205000 -- (-1069.905) [-1070.866] (-1088.618) (-1116.125) * (-1075.924) [-1070.873] (-1121.055) (-1073.586) -- 0:10:24
Average standard deviation of split frequencies: 0.034635
206000 -- [-1073.085] (-1076.403) (-1079.545) (-1115.960) * [-1064.500] (-1080.713) (-1129.424) (-1066.274) -- 0:10:24
207000 -- [-1074.100] (-1080.229) (-1081.330) (-1119.879) * (-1080.963) (-1091.029) (-1124.444) [-1077.804] -- 0:10:20
208000 -- [-1075.157] (-1084.653) (-1076.312) (-1116.448) * (-1085.470) (-1077.553) (-1127.854) [-1072.315] -- 0:10:20
209000 -- [-1076.073] (-1078.786) (-1094.772) (-1126.035) * [-1076.525] (-1085.111) (-1126.114) (-1084.769) -- 0:10:20
210000 -- [-1078.354] (-1080.519) (-1087.085) (-1129.730) * [-1074.270] (-1093.460) (-1115.064) (-1066.305) -- 0:10:20
Average standard deviation of split frequencies: 0.033505
211000 -- [-1073.137] (-1070.548) (-1093.548) (-1123.025) * (-1087.923) [-1075.337] (-1125.025) (-1086.202) -- 0:10:20
212000 -- [-1070.396] (-1083.110) (-1089.772) (-1117.576) * (-1081.512) (-1071.478) (-1126.545) [-1072.151] -- 0:10:17
213000 -- [-1073.257] (-1078.777) (-1090.661) (-1120.579) * [-1063.906] (-1070.367) (-1127.549) (-1085.399) -- 0:10:17
214000 -- [-1074.640] (-1076.568) (-1086.815) (-1119.437) * [-1059.056] (-1092.028) (-1120.736) (-1074.021) -- 0:10:17
215000 -- [-1068.858] (-1077.336) (-1082.269) (-1127.026) * [-1069.109] (-1091.157) (-1126.093) (-1070.211) -- 0:10:17
Average standard deviation of split frequencies: 0.036629
216000 -- [-1069.027] (-1077.099) (-1091.664) (-1128.546) * (-1068.293) (-1078.700) (-1133.597) [-1067.833] -- 0:10:17
217000 -- [-1070.871] (-1071.860) (-1084.602) (-1124.902) * [-1071.491] (-1071.661) (-1133.867) (-1079.393) -- 0:10:17
218000 -- [-1073.838] (-1075.907) (-1068.758) (-1127.821) * (-1075.976) (-1081.027) (-1127.140) [-1065.816] -- 0:10:13
219000 -- [-1067.425] (-1084.519) (-1082.802) (-1147.316) * [-1068.372] (-1072.712) (-1124.937) (-1071.508) -- 0:10:13
220000 -- (-1073.021) [-1076.155] (-1081.529) (-1126.179) * [-1070.560] (-1078.123) (-1132.569) (-1073.781) -- 0:10:13
Average standard deviation of split frequencies: 0.040083
221000 -- [-1080.332] (-1065.090) (-1078.450) (-1126.963) * [-1071.840] (-1088.277) (-1130.357) (-1073.371) -- 0:10:13
222000 -- [-1076.365] (-1071.199) (-1079.425) (-1140.142) * [-1071.644] (-1087.974) (-1125.336) (-1064.736) -- 0:10:13
223000 -- [-1082.452] (-1073.549) (-1082.326) (-1134.001) * [-1077.494] (-1099.674) (-1133.218) (-1074.352) -- 0:10:13
224000 -- (-1077.581) (-1077.159) [-1071.753] (-1129.607) * [-1069.718] (-1088.996) (-1121.574) (-1087.780) -- 0:10:09
225000 -- (-1073.580) (-1080.642) [-1071.969] (-1126.503) * [-1078.193] (-1083.242) (-1129.134) (-1073.941) -- 0:10:09
Average standard deviation of split frequencies: 0.041498
226000 -- (-1076.373) (-1071.301) [-1069.403] (-1136.299) * [-1070.737] (-1085.422) (-1131.136) (-1075.024) -- 0:10:09
227000 -- (-1073.419) (-1068.939) [-1067.700] (-1129.791) * [-1072.290] (-1077.786) (-1132.468) (-1076.145) -- 0:10:09
228000 -- [-1069.920] (-1078.122) (-1076.742) (-1125.726) * [-1071.538] (-1076.516) (-1124.961) (-1089.656) -- 0:10:09
229000 -- (-1072.959) (-1079.426) [-1073.645] (-1141.316) * (-1068.655) (-1081.926) (-1127.111) [-1079.716] -- 0:10:09
230000 -- (-1068.824) (-1095.480) [-1069.771] (-1124.585) * (-1073.774) (-1076.036) (-1129.706) [-1083.094] -- 0:10:09
Average standard deviation of split frequencies: 0.040551
231000 -- (-1076.251) (-1093.309) [-1071.037] (-1121.822) * (-1069.817) (-1068.789) (-1134.477) [-1067.522] -- 0:10:09
232000 -- [-1062.268] (-1079.159) (-1062.592) (-1125.685) * (-1079.587) (-1076.485) (-1128.420) [-1073.859] -- 0:10:05
233000 -- (-1071.286) (-1088.924) [-1069.151] (-1134.156) * (-1085.192) (-1074.940) (-1130.002) [-1073.011] -- 0:10:05
234000 -- (-1075.131) (-1083.243) [-1065.049] (-1126.728) * (-1072.016) (-1081.193) (-1131.582) [-1069.638] -- 0:10:05
235000 -- (-1074.724) (-1089.860) [-1072.690] (-1134.819) * (-1074.571) (-1084.050) (-1127.843) [-1072.201] -- 0:10:05
Average standard deviation of split frequencies: 0.041264
236000 -- [-1087.946] (-1080.065) (-1078.128) (-1143.737) * (-1078.383) (-1090.971) (-1132.842) [-1081.424] -- 0:10:05
237000 -- (-1085.906) (-1081.511) [-1068.401] (-1127.366) * [-1073.958] (-1078.877) (-1123.709) (-1085.279) -- 0:10:02
238000 -- (-1088.946) (-1084.562) [-1070.603] (-1121.312) * (-1076.913) (-1069.738) (-1143.600) [-1070.239] -- 0:10:01
239000 -- (-1079.009) (-1081.877) [-1072.158] (-1129.150) * (-1084.053) [-1074.151] (-1136.283) (-1070.736) -- 0:09:58
240000 -- [-1073.194] (-1082.151) (-1074.937) (-1134.488) * [-1074.122] (-1084.218) (-1126.874) (-1076.990) -- 0:09:58
Average standard deviation of split frequencies: 0.041460
241000 -- (-1082.040) (-1073.076) [-1076.774] (-1130.581) * (-1072.007) (-1081.323) (-1124.275) [-1070.950] -- 0:09:55
242000 -- [-1077.032] (-1078.794) (-1074.758) (-1130.898) * (-1080.335) (-1087.225) (-1130.392) [-1078.099] -- 0:09:55
243000 -- (-1069.001) (-1072.653) [-1068.723] (-1138.614) * (-1075.768) (-1087.173) (-1141.589) [-1075.572] -- 0:09:51
244000 -- (-1087.470) (-1068.522) [-1068.786] (-1127.702) * [-1069.517] (-1080.264) (-1133.516) (-1076.241) -- 0:09:51
245000 -- (-1076.981) (-1079.742) [-1078.377] (-1134.204) * (-1074.509) (-1091.007) (-1129.172) [-1066.520] -- 0:09:48
Average standard deviation of split frequencies: 0.038538
246000 -- (-1084.982) [-1072.983] (-1076.843) (-1144.071) * [-1072.804] (-1089.502) (-1132.047) (-1075.666) -- 0:09:48
247000 -- (-1067.647) (-1077.877) [-1068.606] (-1129.722) * [-1073.636] (-1076.200) (-1128.080) (-1077.380) -- 0:09:48
248000 -- [-1072.794] (-1081.100) (-1073.938) (-1125.756) * [-1073.718] (-1083.761) (-1133.403) (-1098.327) -- 0:09:45
249000 -- (-1084.213) (-1084.322) [-1076.032] (-1124.682) * (-1069.831) [-1069.611] (-1133.919) (-1082.615) -- 0:09:45
250000 -- (-1075.919) (-1076.220) [-1072.371] (-1126.941) * [-1072.925] (-1095.509) (-1138.117) (-1073.593) -- 0:09:42
Average standard deviation of split frequencies: 0.035884
251000 -- (-1083.298) (-1078.700) [-1074.714] (-1125.699) * (-1069.756) [-1073.300] (-1133.853) (-1080.055) -- 0:09:41
252000 -- (-1086.546) (-1070.608) [-1067.618] (-1125.807) * (-1070.255) [-1068.408] (-1141.727) (-1086.633) -- 0:09:38
253000 -- (-1091.113) (-1084.065) [-1071.640] (-1134.796) * (-1077.771) [-1077.670] (-1133.828) (-1076.029) -- 0:09:38
254000 -- (-1070.980) (-1073.281) [-1077.062] (-1145.588) * (-1094.339) [-1074.543] (-1134.073) (-1078.537) -- 0:09:35
255000 -- (-1079.756) (-1084.166) [-1070.601] (-1132.678) * (-1086.931) [-1077.863] (-1136.198) (-1074.775) -- 0:09:35
Average standard deviation of split frequencies: 0.034939
256000 -- (-1084.459) [-1074.497] (-1071.374) (-1153.358) * (-1103.182) [-1075.889] (-1135.228) (-1076.824) -- 0:09:32
257000 -- (-1079.984) [-1075.533] (-1096.123) (-1137.514) * (-1088.886) (-1072.072) (-1134.583) [-1069.807] -- 0:09:32
258000 -- [-1070.552] (-1099.652) (-1075.883) (-1129.998) * (-1087.628) [-1070.559] (-1129.713) (-1079.113) -- 0:09:32
259000 -- (-1068.584) [-1088.374] (-1077.734) (-1118.490) * (-1084.829) [-1076.071] (-1135.590) (-1077.453) -- 0:09:29
260000 -- [-1060.855] (-1079.403) (-1085.968) (-1125.798) * (-1087.706) [-1082.470] (-1130.759) (-1080.857) -- 0:09:29
Average standard deviation of split frequencies: 0.034898
261000 -- (-1065.759) (-1084.757) [-1075.918] (-1133.404) * (-1080.186) (-1067.794) (-1127.879) [-1071.549] -- 0:09:26
262000 -- [-1070.504] (-1075.442) (-1066.336) (-1139.645) * (-1084.186) (-1074.944) (-1145.959) [-1071.636] -- 0:09:26
263000 -- [-1073.448] (-1089.885) (-1073.181) (-1139.076) * (-1096.487) (-1069.938) (-1142.095) [-1074.798] -- 0:09:23
264000 -- [-1070.650] (-1075.830) (-1079.949) (-1134.330) * (-1070.728) (-1077.784) (-1121.442) [-1080.044] -- 0:09:23
265000 -- [-1071.266] (-1074.917) (-1074.559) (-1132.061) * (-1094.250) [-1086.711] (-1142.285) (-1078.445) -- 0:09:20
Average standard deviation of split frequencies: 0.035875
266000 -- (-1071.136) [-1074.829] (-1070.612) (-1128.812) * (-1079.579) (-1075.914) (-1148.937) [-1072.470] -- 0:09:20
267000 -- [-1068.263] (-1091.094) (-1078.330) (-1124.574) * (-1099.786) [-1068.287] (-1126.394) (-1078.275) -- 0:09:17
268000 -- [-1076.600] (-1096.236) (-1079.985) (-1136.155) * (-1073.844) (-1083.110) (-1129.026) [-1065.764] -- 0:09:17
269000 -- (-1074.988) (-1077.104) [-1068.544] (-1125.747) * (-1080.107) (-1073.192) (-1131.956) [-1072.540] -- 0:09:17
270000 -- [-1082.992] (-1073.855) (-1080.595) (-1130.005) * (-1075.709) [-1067.290] (-1125.917) (-1076.999) -- 0:09:14
Average standard deviation of split frequencies: 0.035547
271000 -- (-1078.798) (-1077.977) [-1071.615] (-1143.992) * (-1084.745) [-1073.171] (-1132.291) (-1080.067) -- 0:09:14
272000 -- (-1071.795) (-1092.143) [-1073.085] (-1131.523) * (-1090.795) (-1064.980) (-1133.988) [-1070.397] -- 0:09:11
273000 -- [-1069.880] (-1070.528) (-1069.368) (-1126.315) * (-1088.351) [-1067.704] (-1133.825) (-1083.172) -- 0:09:11
274000 -- [-1084.092] (-1079.811) (-1074.986) (-1132.014) * (-1078.743) [-1068.761] (-1128.548) (-1079.981) -- 0:09:08
275000 -- [-1075.144] (-1076.509) (-1070.570) (-1137.331) * (-1085.541) (-1080.253) (-1133.608) [-1073.358] -- 0:09:08
Average standard deviation of split frequencies: 0.037668
276000 -- [-1075.109] (-1065.821) (-1078.725) (-1130.053) * (-1079.697) (-1077.712) (-1126.234) [-1068.770] -- 0:09:05
277000 -- [-1069.805] (-1072.493) (-1075.112) (-1127.567) * (-1078.577) (-1065.997) (-1121.718) [-1075.683] -- 0:09:05
278000 -- [-1072.781] (-1076.627) (-1080.734) (-1130.559) * (-1068.091) (-1072.537) (-1131.136) [-1063.721] -- 0:09:02
279000 -- [-1083.115] (-1077.814) (-1078.195) (-1132.948) * [-1074.026] (-1094.106) (-1129.805) (-1078.558) -- 0:09:02
280000 -- [-1070.166] (-1086.551) (-1072.985) (-1133.707) * (-1075.910) (-1089.477) (-1146.082) [-1087.558] -- 0:09:00
Average standard deviation of split frequencies: 0.033592
281000 -- [-1080.902] (-1084.012) (-1069.487) (-1139.367) * (-1087.592) (-1075.794) (-1133.059) [-1081.767] -- 0:08:59
282000 -- (-1076.420) (-1081.656) [-1070.736] (-1132.498) * (-1091.775) (-1077.105) (-1149.916) [-1086.480] -- 0:08:57
283000 -- (-1066.069) (-1085.806) [-1070.914] (-1130.243) * (-1089.479) (-1087.456) (-1152.843) [-1074.799] -- 0:08:57
284000 -- (-1080.673) [-1071.166] (-1072.108) (-1123.330) * (-1084.899) (-1091.547) (-1128.597) [-1074.922] -- 0:08:57
285000 -- (-1070.719) [-1068.647] (-1069.247) (-1124.413) * (-1085.463) (-1074.321) (-1126.747) [-1070.950] -- 0:08:54
Average standard deviation of split frequencies: 0.031486
286000 -- [-1071.060] (-1081.934) (-1079.689) (-1126.492) * (-1069.986) (-1075.076) (-1138.728) [-1070.636] -- 0:08:54
287000 -- [-1070.467] (-1078.171) (-1093.126) (-1124.334) * (-1065.797) (-1072.231) (-1130.327) [-1071.827] -- 0:08:51
288000 -- [-1073.535] (-1086.671) (-1086.585) (-1131.041) * [-1067.721] (-1076.545) (-1135.602) (-1079.301) -- 0:08:51
289000 -- (-1086.368) [-1074.076] (-1083.696) (-1126.190) * (-1066.157) [-1074.562] (-1139.457) (-1074.349) -- 0:08:48
290000 -- [-1069.820] (-1079.803) (-1072.999) (-1134.076) * [-1071.128] (-1084.208) (-1128.763) (-1080.767) -- 0:08:48
Average standard deviation of split frequencies: 0.033060
291000 -- [-1070.899] (-1082.175) (-1073.522) (-1135.509) * (-1071.641) (-1086.655) (-1130.646) [-1080.413] -- 0:08:46
292000 -- (-1075.248) (-1076.257) [-1075.969] (-1131.075) * (-1087.448) (-1075.185) (-1132.679) [-1068.487] -- 0:08:46
293000 -- (-1072.202) (-1078.783) [-1066.169] (-1126.712) * [-1071.735] (-1090.468) (-1123.071) (-1095.154) -- 0:08:43
294000 -- (-1068.288) (-1081.683) [-1077.095] (-1127.752) * (-1066.490) [-1072.903] (-1128.030) (-1090.273) -- 0:08:43
295000 -- [-1083.027] (-1068.226) (-1065.575) (-1130.797) * (-1077.116) [-1080.383] (-1125.794) (-1075.899) -- 0:08:43
Average standard deviation of split frequencies: 0.032899
296000 -- (-1074.066) (-1073.007) [-1067.751] (-1134.286) * (-1083.131) [-1063.133] (-1145.935) (-1076.415) -- 0:08:40
297000 -- (-1082.710) (-1069.432) [-1069.575] (-1128.783) * (-1087.995) [-1076.240] (-1124.107) (-1081.634) -- 0:08:40
298000 -- [-1069.271] (-1070.940) (-1081.852) (-1116.428) * (-1078.274) (-1076.808) (-1127.057) [-1067.111] -- 0:08:38
299000 -- (-1089.738) (-1081.904) [-1072.262] (-1132.064) * [-1070.604] (-1068.375) (-1126.703) (-1077.725) -- 0:08:38
300000 -- (-1081.300) [-1082.475] (-1081.885) (-1122.135) * [-1073.664] (-1075.095) (-1140.699) (-1078.830) -- 0:08:35
Average standard deviation of split frequencies: 0.033585
301000 -- (-1081.805) [-1074.535] (-1073.881) (-1125.007) * [-1074.626] (-1090.131) (-1139.575) (-1078.206) -- 0:08:35
302000 -- (-1077.891) [-1065.360] (-1078.309) (-1133.868) * (-1086.977) (-1085.515) (-1131.481) [-1079.727] -- 0:08:33
303000 -- (-1083.626) [-1076.075] (-1087.156) (-1128.893) * [-1071.589] (-1076.317) (-1136.731) (-1078.916) -- 0:08:32
304000 -- (-1080.403) (-1078.499) [-1072.448] (-1129.038) * [-1069.549] (-1084.761) (-1130.358) (-1083.022) -- 0:08:30
305000 -- (-1073.825) (-1075.688) [-1074.680] (-1138.290) * [-1080.042] (-1079.982) (-1131.988) (-1092.279) -- 0:08:30
Average standard deviation of split frequencies: 0.033497
306000 -- (-1071.173) (-1075.086) [-1080.374] (-1133.739) * (-1072.622) [-1067.356] (-1131.227) (-1080.123) -- 0:08:28
307000 -- (-1076.939) [-1072.204] (-1071.317) (-1123.245) * [-1073.994] (-1066.163) (-1126.293) (-1081.126) -- 0:08:27
308000 -- (-1079.295) [-1073.541] (-1084.033) (-1131.254) * [-1076.126] (-1078.365) (-1123.079) (-1085.202) -- 0:08:25
309000 -- (-1084.459) [-1072.252] (-1073.420) (-1126.478) * [-1074.918] (-1069.592) (-1133.275) (-1087.627) -- 0:08:25
310000 -- (-1084.766) [-1075.623] (-1081.397) (-1133.910) * [-1073.551] (-1076.519) (-1127.807) (-1076.748) -- 0:08:25
Average standard deviation of split frequencies: 0.034550
311000 -- (-1080.769) [-1079.028] (-1073.320) (-1135.856) * (-1081.338) [-1066.206] (-1130.585) (-1085.219) -- 0:08:22
312000 -- (-1098.955) (-1089.068) [-1072.141] (-1132.416) * (-1073.141) (-1076.204) (-1123.004) [-1064.102] -- 0:08:22
313000 -- (-1090.788) (-1088.046) [-1071.696] (-1133.043) * (-1087.413) (-1078.869) (-1135.153) [-1071.445] -- 0:08:20
314000 -- (-1079.551) (-1087.224) [-1073.344] (-1144.526) * (-1087.738) [-1076.687] (-1142.323) (-1068.928) -- 0:08:20
315000 -- (-1083.749) (-1081.875) [-1077.024] (-1140.357) * (-1088.336) [-1076.696] (-1113.535) (-1076.567) -- 0:08:17
Average standard deviation of split frequencies: 0.033699
316000 -- (-1080.465) [-1073.512] (-1091.378) (-1137.894) * (-1093.448) [-1078.385] (-1122.545) (-1070.021) -- 0:08:17
317000 -- (-1077.713) [-1078.818] (-1078.200) (-1125.648) * (-1082.047) [-1075.169] (-1124.099) (-1077.199) -- 0:08:15
318000 -- [-1067.715] (-1087.213) (-1083.106) (-1127.829) * (-1080.332) (-1068.262) (-1125.472) [-1069.538] -- 0:08:15
319000 -- [-1070.361] (-1087.881) (-1075.577) (-1128.505) * (-1076.907) [-1063.639] (-1142.491) (-1070.457) -- 0:08:15
320000 -- [-1069.583] (-1097.598) (-1072.736) (-1122.634) * (-1084.565) [-1073.897] (-1136.614) (-1068.567) -- 0:08:12
Average standard deviation of split frequencies: 0.032229
321000 -- (-1076.552) (-1084.320) [-1071.472] (-1127.240) * (-1077.288) [-1072.010] (-1133.833) (-1086.478) -- 0:08:12
322000 -- (-1078.391) (-1088.250) [-1063.270] (-1129.345) * (-1068.216) [-1075.537] (-1126.098) (-1072.459) -- 0:08:10
323000 -- (-1084.611) (-1082.898) [-1064.849] (-1115.413) * (-1068.110) [-1074.383] (-1119.662) (-1083.077) -- 0:08:10
324000 -- (-1092.294) (-1085.486) [-1061.335] (-1131.146) * (-1072.579) [-1070.594] (-1139.608) (-1079.441) -- 0:08:08
325000 -- (-1092.346) (-1094.492) [-1067.068] (-1131.483) * (-1078.947) [-1066.473] (-1141.199) (-1089.838) -- 0:08:08
Average standard deviation of split frequencies: 0.031162
326000 -- (-1083.749) (-1082.240) [-1065.707] (-1135.228) * (-1079.364) [-1070.775] (-1134.451) (-1068.277) -- 0:08:05
327000 -- (-1070.694) (-1082.243) [-1074.306] (-1133.326) * (-1086.574) [-1074.689] (-1128.080) (-1066.885) -- 0:08:05
328000 -- (-1069.001) (-1100.211) [-1066.442] (-1119.450) * (-1086.397) [-1075.291] (-1128.283) (-1079.315) -- 0:08:03
329000 -- (-1082.241) (-1100.463) [-1078.577] (-1116.652) * [-1075.554] (-1076.962) (-1135.603) (-1074.927) -- 0:08:03
330000 -- (-1065.330) (-1103.453) [-1082.590] (-1138.300) * (-1084.289) [-1070.693] (-1131.464) (-1081.477) -- 0:08:01
Average standard deviation of split frequencies: 0.029719
331000 -- (-1069.716) (-1089.509) [-1081.047] (-1126.488) * [-1077.195] (-1085.897) (-1128.710) (-1083.551) -- 0:08:01
332000 -- (-1067.658) (-1090.152) [-1075.649] (-1127.212) * [-1080.941] (-1073.621) (-1120.719) (-1089.721) -- 0:07:58
333000 -- [-1073.853] (-1086.742) (-1078.305) (-1129.131) * [-1083.356] (-1085.979) (-1121.729) (-1084.850) -- 0:07:58
334000 -- [-1073.480] (-1089.470) (-1082.646) (-1130.494) * (-1085.254) [-1066.472] (-1131.655) (-1076.486) -- 0:07:58
335000 -- [-1074.596] (-1086.467) (-1090.221) (-1126.585) * (-1067.899) (-1083.586) (-1120.829) [-1074.362] -- 0:07:56
Average standard deviation of split frequencies: 0.027304
336000 -- (-1073.834) (-1082.132) [-1079.542] (-1124.369) * (-1076.018) [-1070.909] (-1123.628) (-1072.423) -- 0:07:56
337000 -- (-1081.206) [-1070.782] (-1072.641) (-1149.061) * (-1079.765) [-1071.886] (-1123.928) (-1078.821) -- 0:07:54
338000 -- (-1090.161) [-1076.228] (-1084.248) (-1137.677) * (-1073.057) (-1087.805) (-1127.034) [-1069.256] -- 0:07:53
339000 -- [-1079.696] (-1064.953) (-1085.091) (-1135.852) * (-1073.746) (-1088.469) (-1126.938) [-1071.045] -- 0:07:51
340000 -- (-1071.546) [-1072.625] (-1074.912) (-1140.798) * [-1063.781] (-1084.731) (-1131.396) (-1085.950) -- 0:07:51
Average standard deviation of split frequencies: 0.025440
341000 -- (-1070.019) [-1066.736] (-1088.850) (-1139.504) * (-1075.354) [-1078.119] (-1134.673) (-1080.606) -- 0:07:49
342000 -- [-1072.074] (-1091.732) (-1084.694) (-1135.941) * (-1080.204) (-1085.059) (-1125.715) [-1072.002] -- 0:07:49
343000 -- [-1061.952] (-1081.177) (-1084.375) (-1125.657) * (-1082.730) [-1075.684] (-1140.992) (-1075.854) -- 0:07:47
344000 -- [-1072.653] (-1080.350) (-1080.988) (-1133.858) * (-1085.718) (-1085.929) (-1129.971) [-1066.827] -- 0:07:47
345000 -- [-1070.309] (-1075.538) (-1091.217) (-1129.181) * (-1086.382) [-1079.289] (-1125.701) (-1078.783) -- 0:07:45
Average standard deviation of split frequencies: 0.023161
346000 -- [-1068.381] (-1081.264) (-1085.319) (-1131.728) * [-1075.934] (-1080.447) (-1130.691) (-1087.576) -- 0:07:44
347000 -- [-1062.751] (-1090.282) (-1070.426) (-1145.747) * (-1073.253) [-1075.259] (-1120.485) (-1070.735) -- 0:07:44
348000 -- [-1065.462] (-1093.726) (-1080.398) (-1139.266) * (-1093.024) (-1077.446) (-1131.433) [-1070.503] -- 0:07:42
349000 -- [-1069.282] (-1085.855) (-1079.148) (-1136.182) * (-1082.163) [-1081.588] (-1143.708) (-1082.867) -- 0:07:42
350000 -- [-1080.039] (-1071.638) (-1081.598) (-1135.148) * (-1081.107) [-1065.030] (-1128.372) (-1079.247) -- 0:07:40
Average standard deviation of split frequencies: 0.021785
351000 -- [-1089.754] (-1071.743) (-1079.296) (-1142.072) * [-1077.103] (-1072.983) (-1128.939) (-1100.191) -- 0:07:40
352000 -- (-1089.820) [-1072.901] (-1084.584) (-1127.225) * (-1076.394) [-1072.480] (-1115.653) (-1098.462) -- 0:07:38
353000 -- [-1070.943] (-1075.367) (-1083.833) (-1132.647) * [-1075.861] (-1077.404) (-1128.766) (-1092.243) -- 0:07:38
354000 -- [-1085.067] (-1082.247) (-1085.904) (-1132.525) * (-1082.007) [-1066.928] (-1118.671) (-1083.900) -- 0:07:36
355000 -- [-1068.787] (-1093.434) (-1082.341) (-1135.353) * (-1086.178) [-1070.459] (-1127.429) (-1095.652) -- 0:07:36
Average standard deviation of split frequencies: 0.020881
356000 -- [-1072.472] (-1096.631) (-1080.786) (-1137.170) * (-1076.382) [-1073.086] (-1127.498) (-1078.756) -- 0:07:34
357000 -- (-1079.408) (-1080.362) [-1076.194] (-1134.273) * (-1078.422) [-1067.701] (-1129.236) (-1081.111) -- 0:07:33
358000 -- [-1075.582] (-1091.728) (-1070.476) (-1129.603) * (-1077.994) [-1076.499] (-1126.368) (-1074.878) -- 0:07:31
359000 -- (-1069.100) (-1084.969) [-1076.754] (-1121.673) * (-1081.921) [-1073.275] (-1125.109) (-1079.563) -- 0:07:31
360000 -- [-1078.617] (-1069.487) (-1078.432) (-1123.477) * (-1081.257) (-1072.991) (-1117.960) [-1069.030] -- 0:07:29
Average standard deviation of split frequencies: 0.020041
361000 -- (-1078.302) (-1080.084) [-1062.587] (-1123.414) * (-1077.869) [-1073.439] (-1123.611) (-1076.288) -- 0:07:29
362000 -- (-1073.081) (-1075.050) [-1067.060] (-1129.960) * (-1083.583) (-1083.544) (-1126.342) [-1078.031] -- 0:07:29
363000 -- (-1067.716) (-1073.846) [-1068.110] (-1127.180) * (-1065.798) (-1071.632) (-1130.908) [-1069.362] -- 0:07:27
364000 -- [-1074.454] (-1080.867) (-1083.294) (-1132.797) * (-1078.728) (-1082.408) (-1127.731) [-1065.423] -- 0:07:27
365000 -- [-1075.605] (-1078.219) (-1082.564) (-1129.683) * [-1068.915] (-1093.447) (-1127.850) (-1071.780) -- 0:07:25
Average standard deviation of split frequencies: 0.019122
366000 -- [-1072.731] (-1079.407) (-1077.562) (-1128.935) * [-1070.342] (-1089.947) (-1118.570) (-1103.183) -- 0:07:25
367000 -- [-1070.911] (-1073.624) (-1069.775) (-1122.003) * (-1083.395) [-1085.530] (-1117.599) (-1078.320) -- 0:07:23
368000 -- (-1075.547) (-1084.034) [-1066.120] (-1130.071) * (-1079.119) [-1076.708] (-1118.704) (-1078.964) -- 0:07:23
369000 -- [-1074.718] (-1072.910) (-1076.830) (-1127.093) * [-1071.266] (-1071.668) (-1135.342) (-1084.923) -- 0:07:21
370000 -- [-1069.317] (-1088.075) (-1073.355) (-1125.644) * (-1081.921) [-1078.180] (-1135.041) (-1093.892) -- 0:07:21
Average standard deviation of split frequencies: 0.018653
371000 -- [-1071.075] (-1088.685) (-1078.222) (-1126.124) * (-1085.815) [-1078.912] (-1125.403) (-1079.079) -- 0:07:20
372000 -- [-1067.147] (-1077.297) (-1090.934) (-1122.271) * (-1083.152) [-1067.328] (-1134.048) (-1072.168) -- 0:07:20
373000 -- [-1077.887] (-1085.574) (-1087.044) (-1132.893) * (-1091.024) [-1074.259] (-1149.971) (-1066.610) -- 0:07:20
374000 -- (-1078.930) [-1074.613] (-1076.044) (-1126.790) * (-1080.109) (-1085.197) (-1127.263) [-1068.451] -- 0:07:18
375000 -- [-1068.154] (-1080.099) (-1073.562) (-1122.138) * (-1076.700) (-1071.801) (-1132.961) [-1069.006] -- 0:07:18
Average standard deviation of split frequencies: 0.018292
376000 -- (-1080.772) [-1076.791] (-1075.004) (-1137.016) * (-1088.221) (-1076.173) (-1135.372) [-1074.452] -- 0:07:18
377000 -- (-1082.787) [-1079.993] (-1087.284) (-1146.523) * (-1080.117) (-1086.264) (-1136.200) [-1072.364] -- 0:07:17
378000 -- (-1082.731) [-1069.378] (-1077.276) (-1139.998) * (-1072.156) (-1091.440) (-1125.990) [-1069.806] -- 0:07:17
379000 -- (-1090.981) (-1073.593) [-1072.367] (-1133.514) * (-1069.322) (-1092.651) (-1118.427) [-1069.479] -- 0:07:17
380000 -- [-1073.047] (-1069.063) (-1079.930) (-1132.947) * (-1076.373) (-1101.515) (-1126.757) [-1067.854] -- 0:07:15
Average standard deviation of split frequencies: 0.017464
381000 -- (-1080.978) [-1072.296] (-1091.114) (-1136.604) * (-1088.293) (-1093.553) (-1130.312) [-1068.829] -- 0:07:15
382000 -- (-1095.095) [-1066.598] (-1068.198) (-1126.407) * (-1088.257) (-1093.826) (-1130.085) [-1073.287] -- 0:07:13
383000 -- (-1082.952) (-1072.032) [-1080.291] (-1126.536) * (-1071.667) (-1088.551) (-1134.967) [-1068.865] -- 0:07:13
384000 -- (-1082.532) [-1066.841] (-1072.453) (-1127.662) * (-1087.895) [-1067.186] (-1139.769) (-1071.204) -- 0:07:11
385000 -- (-1076.398) [-1070.427] (-1070.416) (-1145.835) * (-1084.706) [-1065.144] (-1141.099) (-1084.605) -- 0:07:11
Average standard deviation of split frequencies: 0.016534
386000 -- (-1102.303) [-1077.962] (-1072.000) (-1125.926) * (-1073.924) [-1066.084] (-1131.838) (-1077.000) -- 0:07:09
387000 -- [-1073.214] (-1073.992) (-1088.523) (-1133.022) * (-1081.570) (-1074.261) (-1134.734) [-1070.354] -- 0:07:09
388000 -- [-1070.475] (-1074.910) (-1073.949) (-1119.318) * (-1079.684) (-1081.060) (-1124.167) [-1076.562] -- 0:07:09
389000 -- (-1075.830) (-1071.282) [-1072.503] (-1136.929) * (-1090.300) (-1077.970) (-1124.108) [-1078.107] -- 0:07:07
390000 -- (-1071.424) (-1079.151) [-1074.656] (-1128.152) * (-1076.227) (-1079.585) (-1132.578) [-1064.965] -- 0:07:07
Average standard deviation of split frequencies: 0.017357
391000 -- (-1087.398) (-1071.870) [-1075.731] (-1120.148) * (-1074.046) (-1086.236) (-1129.984) [-1075.489] -- 0:07:05
392000 -- (-1098.660) [-1075.751] (-1077.166) (-1123.035) * (-1078.197) (-1081.351) (-1133.970) [-1075.890] -- 0:07:04
393000 -- (-1093.107) [-1072.799] (-1080.023) (-1125.907) * [-1080.398] (-1079.758) (-1124.261) (-1099.956) -- 0:07:03
394000 -- (-1085.668) (-1073.835) [-1066.836] (-1124.125) * (-1078.373) [-1068.207] (-1127.634) (-1088.594) -- 0:07:02
395000 -- (-1098.865) [-1081.040] (-1063.520) (-1124.257) * (-1073.765) (-1076.198) (-1136.279) [-1076.302] -- 0:07:01
Average standard deviation of split frequencies: 0.017762
396000 -- (-1082.528) [-1078.592] (-1081.498) (-1125.365) * (-1086.556) (-1078.766) (-1119.433) [-1081.413] -- 0:07:00
397000 -- [-1075.880] (-1068.760) (-1080.833) (-1133.861) * (-1085.409) (-1090.209) (-1128.405) [-1072.158] -- 0:07:00
398000 -- (-1066.823) [-1065.602] (-1085.015) (-1136.307) * (-1076.507) (-1089.175) (-1126.834) [-1067.452] -- 0:06:58
399000 -- (-1077.659) (-1072.273) [-1071.524] (-1134.313) * (-1080.608) (-1077.153) (-1120.983) [-1071.753] -- 0:06:58
400000 -- (-1086.966) [-1081.137] (-1079.380) (-1125.983) * (-1080.589) (-1071.237) (-1132.351) [-1078.905] -- 0:06:57
Average standard deviation of split frequencies: 0.015605
401000 -- [-1063.075] (-1080.742) (-1070.572) (-1120.795) * (-1069.741) (-1094.937) (-1124.750) [-1071.955] -- 0:06:56
402000 -- [-1071.598] (-1091.612) (-1075.815) (-1124.614) * [-1072.438] (-1084.747) (-1133.632) (-1071.825) -- 0:06:55
403000 -- [-1069.324] (-1069.960) (-1076.782) (-1121.003) * [-1073.400] (-1081.307) (-1155.012) (-1086.271) -- 0:06:54
404000 -- (-1083.865) (-1079.220) [-1075.913] (-1131.621) * [-1068.632] (-1088.182) (-1130.946) (-1073.003) -- 0:06:53
405000 -- (-1079.522) [-1079.689] (-1077.617) (-1148.167) * [-1071.383] (-1074.213) (-1129.122) (-1091.475) -- 0:06:52
Average standard deviation of split frequencies: 0.014529
406000 -- (-1080.638) (-1076.599) [-1072.601] (-1139.787) * [-1071.955] (-1083.166) (-1147.357) (-1094.928) -- 0:06:51
407000 -- [-1075.230] (-1070.488) (-1083.297) (-1140.036) * [-1075.364] (-1081.099) (-1143.447) (-1085.498) -- 0:06:50
408000 -- (-1093.082) [-1070.930] (-1078.511) (-1124.323) * [-1079.656] (-1088.655) (-1126.721) (-1073.280) -- 0:06:50
409000 -- [-1071.812] (-1077.854) (-1093.967) (-1131.600) * [-1075.563] (-1086.556) (-1132.275) (-1067.859) -- 0:06:48
410000 -- [-1072.811] (-1071.802) (-1079.928) (-1123.363) * [-1076.208] (-1078.420) (-1124.804) (-1076.199) -- 0:06:48
Average standard deviation of split frequencies: 0.013201
411000 -- [-1085.960] (-1070.351) (-1074.541) (-1134.927) * [-1074.421] (-1078.197) (-1141.380) (-1081.483) -- 0:06:46
412000 -- (-1073.843) (-1076.562) [-1073.934] (-1131.624) * [-1079.356] (-1089.208) (-1140.285) (-1073.495) -- 0:06:46
413000 -- (-1071.793) [-1067.497] (-1075.465) (-1135.045) * [-1075.425] (-1081.401) (-1126.871) (-1072.835) -- 0:06:45
414000 -- (-1068.533) (-1071.970) [-1067.950] (-1131.732) * [-1066.409] (-1094.003) (-1120.928) (-1078.462) -- 0:06:44
415000 -- (-1079.440) [-1079.243] (-1070.088) (-1140.106) * [-1070.361] (-1086.141) (-1136.337) (-1075.928) -- 0:06:43
Average standard deviation of split frequencies: 0.013061
416000 -- (-1081.259) (-1084.572) [-1073.809] (-1124.623) * (-1069.745) [-1076.063] (-1126.581) (-1083.963) -- 0:06:42
417000 -- (-1071.537) [-1076.046] (-1075.936) (-1125.918) * [-1071.714] (-1084.409) (-1127.865) (-1079.656) -- 0:06:42
418000 -- [-1069.292] (-1084.990) (-1073.178) (-1121.182) * (-1071.595) [-1083.797] (-1130.045) (-1072.960) -- 0:06:40
419000 -- (-1076.544) (-1077.651) [-1070.474] (-1114.588) * [-1077.789] (-1067.201) (-1124.269) (-1070.609) -- 0:06:40
420000 -- [-1068.442] (-1079.519) (-1072.444) (-1130.545) * (-1076.602) [-1066.386] (-1129.751) (-1087.857) -- 0:06:39
Average standard deviation of split frequencies: 0.013074
421000 -- (-1076.183) (-1084.955) [-1074.535] (-1127.563) * (-1071.270) [-1070.067] (-1124.287) (-1076.313) -- 0:06:38
422000 -- (-1077.404) (-1080.398) [-1063.019] (-1137.483) * (-1076.011) (-1077.143) (-1131.045) [-1082.809] -- 0:06:37
423000 -- (-1072.654) (-1076.081) [-1072.345] (-1132.524) * (-1074.641) [-1072.414] (-1119.962) (-1077.236) -- 0:06:36
424000 -- (-1082.647) [-1075.099] (-1073.238) (-1119.340) * (-1073.974) [-1081.744] (-1125.664) (-1098.981) -- 0:06:35
425000 -- (-1079.567) (-1088.368) [-1070.652] (-1121.225) * (-1078.361) (-1082.150) (-1124.670) [-1071.546] -- 0:06:35
Average standard deviation of split frequencies: 0.013861
426000 -- (-1076.049) (-1080.015) [-1074.637] (-1120.749) * (-1077.693) (-1097.811) (-1132.887) [-1071.619] -- 0:06:34
427000 -- (-1079.503) (-1088.952) [-1062.007] (-1130.385) * (-1078.039) (-1082.123) (-1115.474) [-1065.156] -- 0:06:33
428000 -- (-1076.288) [-1064.557] (-1073.388) (-1132.774) * (-1075.559) (-1070.721) (-1124.420) [-1062.070] -- 0:06:32
429000 -- (-1080.156) (-1075.098) [-1065.981] (-1140.406) * [-1076.743] (-1076.948) (-1133.596) (-1084.749) -- 0:06:31
430000 -- (-1081.469) (-1071.541) [-1066.550] (-1137.915) * (-1084.178) [-1081.006] (-1138.903) (-1088.591) -- 0:06:31
Average standard deviation of split frequencies: 0.013942
431000 -- [-1077.001] (-1084.702) (-1077.545) (-1130.391) * (-1073.072) (-1089.321) (-1140.723) [-1066.148] -- 0:06:29
432000 -- [-1083.250] (-1082.663) (-1074.750) (-1129.655) * (-1084.637) (-1082.592) (-1135.480) [-1066.940] -- 0:06:29
433000 -- [-1068.739] (-1069.407) (-1077.407) (-1121.016) * [-1068.506] (-1074.493) (-1138.573) (-1071.638) -- 0:06:27
434000 -- (-1079.191) [-1066.350] (-1074.231) (-1128.976) * (-1079.954) (-1070.531) (-1120.657) [-1071.156] -- 0:06:27
435000 -- [-1075.396] (-1070.432) (-1076.908) (-1127.202) * (-1083.292) [-1074.383] (-1137.279) (-1075.798) -- 0:06:25
Average standard deviation of split frequencies: 0.013487
436000 -- (-1084.303) [-1070.607] (-1089.871) (-1132.049) * (-1085.838) (-1075.242) (-1138.846) [-1070.384] -- 0:06:25
437000 -- [-1079.685] (-1076.866) (-1082.038) (-1130.455) * (-1079.037) [-1070.977] (-1131.198) (-1080.284) -- 0:06:25
438000 -- (-1075.502) [-1070.476] (-1074.518) (-1120.974) * (-1101.080) [-1071.617] (-1142.503) (-1078.729) -- 0:06:23
439000 -- [-1073.916] (-1080.367) (-1077.143) (-1126.366) * (-1078.535) (-1083.153) (-1135.877) [-1074.399] -- 0:06:23
440000 -- [-1066.370] (-1084.870) (-1087.797) (-1141.041) * [-1069.770] (-1084.308) (-1136.269) (-1080.990) -- 0:06:21
Average standard deviation of split frequencies: 0.013344
441000 -- (-1065.571) (-1073.151) [-1067.323] (-1132.115) * (-1081.761) (-1099.498) (-1123.006) [-1082.061] -- 0:06:21
442000 -- (-1065.990) (-1080.174) [-1074.658] (-1136.554) * [-1073.104] (-1099.575) (-1126.381) (-1071.224) -- 0:06:19
443000 -- [-1068.815] (-1078.134) (-1073.648) (-1126.136) * [-1079.570] (-1068.917) (-1145.313) (-1067.564) -- 0:06:19
444000 -- (-1072.721) (-1069.215) [-1062.938] (-1132.813) * [-1070.851] (-1071.690) (-1143.133) (-1081.848) -- 0:06:18
445000 -- [-1068.935] (-1065.303) (-1084.944) (-1128.230) * (-1069.245) [-1080.456] (-1123.834) (-1089.416) -- 0:06:17
Average standard deviation of split frequencies: 0.013017
446000 -- [-1073.794] (-1083.753) (-1076.095) (-1129.199) * (-1084.852) [-1076.405] (-1127.996) (-1075.961) -- 0:06:17
447000 -- (-1077.431) (-1072.945) [-1085.768] (-1122.581) * (-1074.122) [-1071.761] (-1129.592) (-1070.805) -- 0:06:16
448000 -- [-1071.145] (-1085.418) (-1086.863) (-1128.759) * (-1078.828) [-1065.291] (-1123.548) (-1080.066) -- 0:06:15
449000 -- (-1070.650) (-1084.405) [-1079.305] (-1137.485) * (-1077.462) [-1067.465] (-1122.872) (-1088.730) -- 0:06:14
450000 -- (-1080.787) (-1070.492) [-1071.112] (-1122.429) * (-1083.026) [-1071.955] (-1117.532) (-1068.092) -- 0:06:14
Average standard deviation of split frequencies: 0.014562
451000 -- [-1065.675] (-1077.452) (-1076.833) (-1125.236) * (-1087.228) (-1085.254) (-1129.198) [-1071.905] -- 0:06:12
452000 -- (-1071.334) [-1068.053] (-1080.977) (-1134.203) * (-1086.207) (-1073.160) (-1118.825) [-1071.104] -- 0:06:12
453000 -- (-1078.744) (-1070.688) [-1066.442] (-1132.706) * (-1101.182) (-1073.206) (-1123.624) [-1071.883] -- 0:06:10
454000 -- (-1081.428) (-1071.757) [-1074.051] (-1125.042) * (-1089.484) (-1082.428) (-1122.680) [-1076.103] -- 0:06:10
455000 -- (-1088.302) [-1076.121] (-1087.096) (-1128.818) * (-1078.121) (-1074.910) (-1127.749) [-1067.599] -- 0:06:08
Average standard deviation of split frequencies: 0.014691
456000 -- (-1078.238) [-1070.227] (-1085.463) (-1129.373) * [-1071.916] (-1074.021) (-1112.201) (-1089.778) -- 0:06:08
457000 -- [-1070.519] (-1080.759) (-1075.506) (-1130.910) * [-1076.624] (-1067.247) (-1130.815) (-1079.772) -- 0:06:07
458000 -- (-1083.570) [-1074.328] (-1088.395) (-1125.305) * (-1080.771) [-1078.337] (-1123.051) (-1076.683) -- 0:06:06
459000 -- [-1071.327] (-1068.177) (-1108.017) (-1128.545) * (-1086.158) [-1072.225] (-1131.268) (-1070.836) -- 0:06:06
460000 -- (-1079.028) (-1076.093) [-1068.084] (-1118.421) * (-1082.867) [-1070.062] (-1135.362) (-1064.117) -- 0:06:05
Average standard deviation of split frequencies: 0.014353
461000 -- (-1074.589) (-1076.938) [-1068.184] (-1136.231) * (-1093.335) (-1068.004) (-1140.894) [-1073.362] -- 0:06:04
462000 -- (-1073.207) (-1077.401) [-1064.497] (-1127.159) * (-1078.480) [-1067.399] (-1134.449) (-1075.141) -- 0:06:03
463000 -- (-1062.896) (-1071.724) [-1067.652] (-1125.512) * (-1086.557) (-1084.386) (-1130.470) [-1068.036] -- 0:06:03
464000 -- (-1069.728) [-1075.524] (-1079.189) (-1134.368) * [-1076.282] (-1072.398) (-1134.128) (-1072.519) -- 0:06:01
465000 -- [-1075.135] (-1069.485) (-1071.300) (-1124.195) * (-1092.108) (-1072.258) (-1136.860) [-1075.944] -- 0:06:01
Average standard deviation of split frequencies: 0.013870
466000 -- (-1076.241) [-1073.270] (-1079.045) (-1135.313) * (-1075.698) [-1075.672] (-1143.929) (-1073.374) -- 0:05:59
467000 -- (-1078.697) (-1074.712) [-1064.439] (-1126.239) * (-1091.166) [-1081.610] (-1146.936) (-1072.886) -- 0:05:59
468000 -- (-1089.277) (-1083.424) [-1073.302] (-1121.472) * (-1103.775) (-1068.072) (-1146.876) [-1076.836] -- 0:05:59
469000 -- (-1088.518) (-1078.233) [-1069.388] (-1118.268) * (-1072.306) [-1071.706] (-1137.131) (-1087.661) -- 0:05:57
470000 -- (-1084.405) (-1082.106) [-1067.929] (-1127.839) * (-1075.807) [-1069.926] (-1129.675) (-1070.270) -- 0:05:57
Average standard deviation of split frequencies: 0.013152
471000 -- [-1070.012] (-1074.131) (-1074.533) (-1131.191) * (-1076.784) [-1075.513] (-1134.984) (-1073.329) -- 0:05:56
472000 -- (-1069.863) (-1079.454) [-1075.086] (-1127.524) * (-1077.574) [-1082.386] (-1123.853) (-1070.083) -- 0:05:55
473000 -- (-1069.619) (-1078.118) [-1079.652] (-1120.604) * (-1081.696) [-1078.953] (-1119.490) (-1082.042) -- 0:05:54
474000 -- (-1082.870) (-1069.307) [-1071.233] (-1128.796) * (-1085.862) [-1072.204] (-1123.830) (-1077.678) -- 0:05:53
475000 -- (-1082.068) (-1072.677) [-1077.506] (-1135.687) * (-1076.338) [-1071.715] (-1123.753) (-1070.091) -- 0:05:52
Average standard deviation of split frequencies: 0.012607
476000 -- (-1094.435) (-1078.791) [-1070.909] (-1126.644) * (-1077.831) [-1065.512] (-1123.783) (-1072.131) -- 0:05:52
477000 -- (-1089.988) (-1076.773) [-1073.536] (-1123.195) * (-1077.536) [-1070.167] (-1132.024) (-1078.959) -- 0:05:50
478000 -- (-1076.628) (-1076.712) [-1082.337] (-1128.201) * (-1080.571) [-1081.103] (-1139.010) (-1075.508) -- 0:05:50
479000 -- (-1079.265) (-1083.340) [-1077.866] (-1128.783) * [-1078.811] (-1068.164) (-1142.067) (-1090.790) -- 0:05:49
480000 -- (-1079.247) (-1088.544) [-1085.691] (-1123.717) * (-1071.728) [-1068.146] (-1137.652) (-1088.795) -- 0:05:48
Average standard deviation of split frequencies: 0.013094
481000 -- (-1079.024) (-1086.929) [-1080.030] (-1142.080) * [-1077.166] (-1074.033) (-1138.932) (-1092.240) -- 0:05:48
482000 -- (-1086.364) (-1076.431) [-1071.269] (-1140.151) * (-1073.181) (-1070.330) (-1139.734) [-1080.480] -- 0:05:47
483000 -- (-1067.974) (-1090.811) [-1064.519] (-1131.460) * [-1067.395] (-1075.514) (-1143.815) (-1096.212) -- 0:05:46
484000 -- [-1067.512] (-1082.180) (-1078.675) (-1144.567) * (-1070.451) [-1068.866] (-1160.235) (-1085.263) -- 0:05:45
485000 -- (-1068.521) (-1087.395) [-1062.286] (-1140.156) * (-1074.646) (-1080.354) (-1129.993) [-1063.991] -- 0:05:45
Average standard deviation of split frequencies: 0.012479
486000 -- (-1078.431) (-1082.731) [-1067.052] (-1132.054) * (-1074.522) (-1070.244) (-1132.660) [-1076.163] -- 0:05:43
487000 -- [-1067.759] (-1071.173) (-1080.467) (-1121.540) * (-1070.534) (-1083.716) (-1130.872) [-1065.350] -- 0:05:43
488000 -- (-1076.996) (-1087.102) [-1064.215] (-1127.523) * (-1080.419) (-1080.642) (-1137.995) [-1067.749] -- 0:05:42
489000 -- (-1073.124) (-1081.434) [-1082.145] (-1122.989) * (-1086.760) (-1066.221) (-1131.868) [-1073.066] -- 0:05:41
490000 -- (-1091.616) [-1078.406] (-1073.141) (-1126.971) * (-1075.323) (-1065.571) (-1132.203) [-1076.986] -- 0:05:40
Average standard deviation of split frequencies: 0.013580
491000 -- (-1085.957) [-1071.687] (-1089.952) (-1129.244) * (-1079.398) (-1086.988) (-1136.035) [-1070.969] -- 0:05:40
492000 -- (-1093.698) (-1082.732) [-1086.846] (-1119.664) * (-1065.162) (-1075.775) (-1143.066) [-1069.449] -- 0:05:38
493000 -- (-1094.324) (-1079.929) [-1073.793] (-1125.709) * (-1075.726) [-1070.581] (-1140.968) (-1073.408) -- 0:05:38
494000 -- (-1076.003) (-1068.682) [-1062.706] (-1121.524) * (-1080.331) (-1079.243) (-1136.088) [-1069.222] -- 0:05:36
495000 -- (-1085.624) (-1074.256) [-1064.499] (-1130.626) * (-1072.791) (-1077.051) (-1135.346) [-1072.589] -- 0:05:36
Average standard deviation of split frequencies: 0.013977
496000 -- (-1079.117) (-1078.590) [-1067.902] (-1137.947) * [-1066.081] (-1076.751) (-1123.327) (-1085.935) -- 0:05:36
497000 -- (-1075.276) (-1076.016) [-1071.697] (-1131.504) * [-1083.257] (-1084.800) (-1132.865) (-1078.786) -- 0:05:34
498000 -- (-1080.278) (-1079.594) [-1069.421] (-1137.579) * (-1080.127) [-1077.247] (-1127.426) (-1085.431) -- 0:05:34
499000 -- (-1087.137) (-1093.633) [-1074.691] (-1135.285) * (-1087.759) [-1071.394] (-1134.459) (-1088.831) -- 0:05:33
500000 -- (-1091.115) (-1066.005) [-1067.345] (-1142.297) * (-1081.418) [-1073.989] (-1117.976) (-1076.407) -- 0:05:33
Average standard deviation of split frequencies: 0.012389
501000 -- (-1092.382) [-1071.983] (-1074.181) (-1136.078) * (-1096.498) [-1069.920] (-1136.126) (-1076.871) -- 0:05:31
502000 -- (-1072.195) (-1078.532) [-1072.195] (-1131.632) * (-1079.179) [-1076.530] (-1131.651) (-1063.156) -- 0:05:31
503000 -- [-1073.427] (-1094.620) (-1080.152) (-1137.243) * (-1080.177) [-1078.257] (-1134.368) (-1077.306) -- 0:05:30
504000 -- (-1076.799) [-1080.195] (-1078.025) (-1134.054) * (-1082.085) [-1076.361] (-1131.978) (-1067.154) -- 0:05:29
505000 -- (-1080.635) (-1071.548) [-1076.672] (-1120.757) * (-1073.339) (-1077.563) (-1126.901) [-1075.629] -- 0:05:28
Average standard deviation of split frequencies: 0.011801
506000 -- (-1089.068) [-1072.556] (-1072.181) (-1125.750) * (-1068.400) (-1079.041) (-1130.958) [-1078.170] -- 0:05:28
507000 -- (-1081.807) [-1067.890] (-1081.567) (-1119.989) * (-1085.868) (-1085.658) (-1121.428) [-1076.566] -- 0:05:26
508000 -- (-1071.633) (-1077.154) [-1066.255] (-1120.006) * (-1076.435) (-1080.068) (-1123.615) [-1075.343] -- 0:05:26
509000 -- (-1084.985) (-1089.373) [-1073.755] (-1127.604) * (-1078.273) (-1070.425) (-1131.108) [-1073.350] -- 0:05:26
510000 -- (-1082.158) (-1076.528) [-1069.507] (-1125.319) * (-1078.736) (-1070.072) (-1126.428) [-1068.338] -- 0:05:24
Average standard deviation of split frequencies: 0.011345
511000 -- (-1089.690) [-1075.551] (-1079.031) (-1136.987) * (-1083.757) [-1071.212] (-1134.299) (-1075.007) -- 0:05:24
512000 -- (-1085.726) (-1075.182) [-1063.516] (-1129.373) * (-1091.336) [-1072.502] (-1148.848) (-1073.094) -- 0:05:23
513000 -- (-1076.618) (-1072.894) [-1083.091] (-1137.985) * (-1080.623) [-1077.886] (-1139.833) (-1071.325) -- 0:05:22
514000 -- (-1075.261) (-1082.548) [-1075.676] (-1125.210) * (-1075.174) [-1077.074] (-1133.070) (-1071.608) -- 0:05:21
515000 -- (-1069.683) (-1079.910) [-1078.074] (-1122.091) * (-1086.036) (-1067.011) (-1134.146) [-1071.872] -- 0:05:21
Average standard deviation of split frequencies: 0.011804
516000 -- [-1070.325] (-1075.895) (-1070.673) (-1135.771) * (-1070.716) [-1068.220] (-1135.259) (-1083.172) -- 0:05:19
517000 -- [-1077.139] (-1065.674) (-1069.294) (-1131.035) * (-1070.655) [-1072.018] (-1126.885) (-1079.026) -- 0:05:19
518000 -- (-1072.579) [-1070.181] (-1080.761) (-1154.506) * [-1069.122] (-1079.708) (-1138.097) (-1080.601) -- 0:05:18
519000 -- (-1074.908) [-1078.252] (-1074.674) (-1122.005) * (-1068.128) (-1075.871) (-1144.804) [-1070.669] -- 0:05:17
520000 -- (-1092.420) [-1080.132] (-1072.759) (-1144.016) * (-1111.477) (-1086.783) (-1141.954) [-1069.708] -- 0:05:17
Average standard deviation of split frequencies: 0.012437
521000 -- (-1072.065) (-1079.801) [-1072.186] (-1136.580) * (-1105.522) (-1078.592) (-1128.187) [-1069.683] -- 0:05:16
522000 -- (-1078.147) (-1089.108) [-1075.351] (-1129.574) * (-1088.282) (-1066.734) (-1118.018) [-1086.215] -- 0:05:15
523000 -- (-1080.402) [-1069.785] (-1076.301) (-1145.955) * (-1086.404) [-1075.899] (-1124.164) (-1076.298) -- 0:05:14
524000 -- (-1080.018) (-1070.157) [-1080.185] (-1134.322) * (-1083.322) (-1073.555) (-1130.580) [-1076.978] -- 0:05:14
525000 -- (-1081.156) [-1072.499] (-1075.164) (-1128.293) * (-1084.971) [-1064.692] (-1132.754) (-1083.087) -- 0:05:13
Average standard deviation of split frequencies: 0.012961
526000 -- (-1077.999) [-1078.039] (-1075.205) (-1137.803) * (-1085.029) [-1080.151] (-1128.879) (-1088.668) -- 0:05:12
527000 -- (-1068.639) [-1072.702] (-1078.783) (-1124.208) * (-1074.860) (-1082.968) (-1135.142) [-1064.028] -- 0:05:11
528000 -- (-1083.987) (-1087.972) [-1084.639] (-1129.270) * (-1095.584) [-1080.738] (-1123.723) (-1068.334) -- 0:05:11
529000 -- (-1076.298) (-1075.392) [-1080.600] (-1131.559) * (-1075.895) (-1087.223) (-1129.650) [-1061.457] -- 0:05:09
530000 -- [-1068.462] (-1081.145) (-1070.103) (-1135.855) * [-1075.450] (-1090.448) (-1126.134) (-1073.346) -- 0:05:09
Average standard deviation of split frequencies: 0.012530
531000 -- [-1074.978] (-1082.109) (-1076.722) (-1134.237) * [-1076.753] (-1081.540) (-1131.055) (-1070.350) -- 0:05:09
532000 -- (-1081.007) (-1071.305) [-1084.511] (-1144.938) * [-1072.329] (-1077.681) (-1122.430) (-1070.547) -- 0:05:07
533000 -- (-1066.336) [-1077.359] (-1087.256) (-1131.789) * [-1071.786] (-1086.643) (-1127.618) (-1084.330) -- 0:05:07
534000 -- (-1066.603) [-1075.718] (-1087.726) (-1139.403) * [-1068.835] (-1093.034) (-1128.093) (-1086.433) -- 0:05:06
535000 -- [-1070.976] (-1072.614) (-1091.090) (-1134.414) * [-1080.795] (-1096.877) (-1127.617) (-1078.014) -- 0:05:05
Average standard deviation of split frequencies: 0.012984
536000 -- (-1069.546) [-1066.743] (-1080.291) (-1128.688) * [-1064.679] (-1084.808) (-1121.777) (-1072.112) -- 0:05:04
537000 -- (-1073.037) (-1082.451) [-1079.199] (-1127.608) * [-1070.238] (-1086.023) (-1127.967) (-1077.189) -- 0:05:04
538000 -- (-1067.453) [-1070.511] (-1079.601) (-1129.433) * [-1070.405] (-1090.343) (-1135.140) (-1073.388) -- 0:05:03
539000 -- [-1063.852] (-1074.433) (-1076.240) (-1127.883) * (-1085.462) [-1073.982] (-1131.679) (-1069.836) -- 0:05:02
540000 -- (-1084.246) [-1078.265] (-1079.407) (-1132.923) * (-1082.592) [-1070.491] (-1136.113) (-1089.096) -- 0:05:01
Average standard deviation of split frequencies: 0.013031
541000 -- [-1070.509] (-1087.891) (-1077.781) (-1122.203) * (-1085.226) [-1067.363] (-1131.064) (-1087.819) -- 0:05:01
542000 -- [-1077.656] (-1090.618) (-1078.083) (-1122.763) * [-1059.434] (-1075.534) (-1144.598) (-1089.666) -- 0:05:00
543000 -- (-1078.690) (-1073.099) [-1070.089] (-1135.227) * (-1072.769) [-1065.811] (-1137.901) (-1086.057) -- 0:04:59
544000 -- (-1075.395) [-1072.957] (-1073.720) (-1139.455) * (-1089.736) [-1086.566] (-1132.596) (-1086.903) -- 0:04:59
545000 -- [-1071.563] (-1076.966) (-1089.929) (-1137.383) * (-1080.712) [-1073.030] (-1124.134) (-1089.514) -- 0:04:58
Average standard deviation of split frequencies: 0.012857
546000 -- (-1092.641) (-1075.058) [-1083.943] (-1128.128) * [-1062.496] (-1081.641) (-1121.522) (-1078.534) -- 0:04:57
547000 -- (-1076.344) [-1079.107] (-1091.548) (-1124.970) * [-1063.442] (-1078.360) (-1118.523) (-1081.342) -- 0:04:56
548000 -- (-1082.915) (-1070.461) [-1071.888] (-1131.652) * (-1082.918) [-1068.023] (-1133.947) (-1076.637) -- 0:04:56
549000 -- (-1076.626) (-1071.664) [-1068.594] (-1130.091) * (-1079.257) (-1072.990) (-1129.929) [-1074.412] -- 0:04:54
550000 -- (-1076.103) [-1071.773] (-1072.960) (-1133.299) * [-1078.909] (-1076.533) (-1125.483) (-1080.876) -- 0:04:54
Average standard deviation of split frequencies: 0.013257
551000 -- [-1073.503] (-1078.898) (-1065.377) (-1126.399) * (-1077.311) (-1058.120) (-1117.464) [-1078.057] -- 0:04:53
552000 -- [-1078.752] (-1088.091) (-1075.746) (-1137.283) * (-1088.531) [-1080.947] (-1126.954) (-1082.995) -- 0:04:52
553000 -- (-1075.260) (-1098.466) [-1060.840] (-1137.382) * (-1089.104) [-1069.433] (-1127.906) (-1088.828) -- 0:04:52
554000 -- (-1072.715) (-1084.659) [-1070.138] (-1136.495) * (-1076.395) [-1070.757] (-1129.258) (-1071.103) -- 0:04:51
555000 -- (-1081.355) (-1077.166) [-1069.894] (-1138.301) * [-1070.672] (-1086.398) (-1137.286) (-1074.538) -- 0:04:51
Average standard deviation of split frequencies: 0.012809
556000 -- (-1074.076) (-1086.617) [-1076.507] (-1129.038) * [-1076.887] (-1072.339) (-1129.288) (-1075.229) -- 0:04:49
557000 -- (-1082.309) (-1087.982) [-1067.554] (-1129.321) * (-1084.915) [-1072.836] (-1136.726) (-1079.967) -- 0:04:49
558000 -- (-1082.851) (-1089.393) [-1068.442] (-1123.110) * (-1073.614) [-1073.224] (-1122.486) (-1079.492) -- 0:04:48
559000 -- (-1073.319) (-1085.194) [-1071.920] (-1124.219) * [-1077.819] (-1071.782) (-1141.404) (-1079.746) -- 0:04:47
560000 -- (-1089.204) (-1082.620) [-1068.122] (-1120.074) * [-1070.623] (-1081.832) (-1123.052) (-1075.248) -- 0:04:46
Average standard deviation of split frequencies: 0.012589
561000 -- (-1088.218) (-1080.019) [-1070.759] (-1118.366) * (-1072.371) (-1091.971) (-1127.093) [-1093.638] -- 0:04:46
562000 -- (-1086.920) (-1091.506) [-1062.939] (-1121.190) * [-1070.834] (-1089.301) (-1133.187) (-1081.103) -- 0:04:46
563000 -- (-1078.692) (-1077.640) [-1077.675] (-1128.369) * (-1077.144) (-1081.583) (-1125.767) [-1082.671] -- 0:04:44
564000 -- (-1079.236) (-1083.315) [-1064.237] (-1117.446) * [-1073.598] (-1083.485) (-1120.389) (-1083.115) -- 0:04:44
565000 -- [-1086.150] (-1081.081) (-1069.300) (-1129.235) * (-1065.547) [-1067.376] (-1123.398) (-1082.492) -- 0:04:43
Average standard deviation of split frequencies: 0.011429
566000 -- (-1086.478) (-1084.879) [-1071.043] (-1125.979) * (-1076.673) [-1067.862] (-1132.855) (-1078.368) -- 0:04:42
567000 -- (-1068.932) (-1079.162) [-1072.119] (-1132.979) * (-1083.575) [-1083.947] (-1129.383) (-1080.398) -- 0:04:41
568000 -- (-1069.072) (-1092.696) [-1068.274] (-1133.782) * (-1084.779) (-1090.046) (-1129.196) [-1079.380] -- 0:04:41
569000 -- [-1078.296] (-1075.688) (-1078.785) (-1129.664) * [-1080.538] (-1105.984) (-1128.389) (-1080.142) -- 0:04:40
570000 -- (-1071.715) (-1088.628) [-1086.263] (-1124.102) * (-1101.284) [-1077.550] (-1132.918) (-1076.564) -- 0:04:39
Average standard deviation of split frequencies: 0.010432
571000 -- (-1076.156) (-1083.875) [-1086.929] (-1141.453) * (-1088.050) (-1074.663) (-1114.568) [-1068.509] -- 0:04:38
572000 -- (-1072.606) [-1076.276] (-1076.337) (-1130.803) * (-1068.152) (-1074.930) (-1121.589) [-1069.043] -- 0:04:38
573000 -- (-1070.754) (-1076.878) [-1086.732] (-1125.845) * [-1067.225] (-1076.395) (-1129.257) (-1075.482) -- 0:04:37
574000 -- (-1090.844) [-1068.405] (-1090.130) (-1129.980) * (-1076.836) [-1072.338] (-1121.097) (-1067.453) -- 0:04:36
575000 -- [-1089.345] (-1084.189) (-1083.422) (-1118.605) * (-1080.539) (-1076.627) (-1123.716) [-1071.472] -- 0:04:36
Average standard deviation of split frequencies: 0.010182
576000 -- (-1083.326) (-1086.896) [-1076.267] (-1129.072) * [-1073.499] (-1081.035) (-1128.452) (-1087.423) -- 0:04:35
577000 -- (-1080.190) [-1072.306] (-1077.867) (-1131.389) * (-1074.632) [-1098.281] (-1132.336) (-1075.682) -- 0:04:34
578000 -- (-1070.696) (-1076.680) [-1074.105] (-1126.732) * (-1087.186) (-1080.965) (-1125.012) [-1071.899] -- 0:04:33
579000 -- (-1075.573) [-1076.670] (-1076.673) (-1130.320) * (-1074.474) [-1074.227] (-1135.690) (-1075.774) -- 0:04:33
580000 -- (-1066.854) (-1081.058) [-1075.504] (-1120.564) * (-1089.051) (-1088.267) (-1141.992) [-1074.082] -- 0:04:32
Average standard deviation of split frequencies: 0.010148
581000 -- (-1072.710) [-1071.293] (-1078.396) (-1128.557) * (-1085.894) (-1086.733) (-1140.893) [-1074.545] -- 0:04:31
582000 -- (-1075.530) [-1065.146] (-1077.762) (-1123.821) * (-1106.432) (-1077.770) (-1132.292) [-1074.865] -- 0:04:31
583000 -- (-1082.500) [-1063.611] (-1085.683) (-1132.944) * (-1082.858) [-1074.201] (-1118.572) (-1074.546) -- 0:04:30
584000 -- [-1081.996] (-1075.374) (-1090.211) (-1125.448) * (-1091.689) [-1068.574] (-1135.890) (-1073.577) -- 0:04:29
585000 -- (-1063.717) [-1071.018] (-1097.018) (-1127.759) * (-1080.661) (-1072.525) (-1126.166) [-1074.080] -- 0:04:28
Average standard deviation of split frequencies: 0.010642
586000 -- [-1066.629] (-1076.596) (-1079.213) (-1143.476) * (-1081.033) (-1081.452) (-1124.285) [-1079.659] -- 0:04:28
587000 -- (-1064.266) (-1091.378) [-1067.277] (-1129.376) * [-1077.697] (-1089.723) (-1134.497) (-1082.048) -- 0:04:27
588000 -- (-1079.024) [-1072.066] (-1071.622) (-1133.611) * (-1075.384) (-1081.665) (-1120.627) [-1067.837] -- 0:04:26
589000 -- (-1077.646) [-1066.637] (-1084.143) (-1129.381) * (-1070.415) (-1076.984) (-1130.454) [-1072.592] -- 0:04:25
590000 -- (-1073.396) [-1070.044] (-1081.447) (-1121.424) * (-1074.117) (-1087.485) (-1138.548) [-1065.273] -- 0:04:25
Average standard deviation of split frequencies: 0.009976
591000 -- [-1070.182] (-1074.397) (-1088.654) (-1130.235) * [-1080.246] (-1083.398) (-1141.037) (-1074.028) -- 0:04:24
592000 -- [-1060.097] (-1078.878) (-1078.166) (-1125.249) * [-1074.814] (-1090.180) (-1122.297) (-1073.902) -- 0:04:23
593000 -- (-1070.512) [-1076.647] (-1079.331) (-1128.669) * [-1072.080] (-1092.776) (-1125.108) (-1079.023) -- 0:04:23
594000 -- (-1083.838) [-1073.677] (-1080.673) (-1116.970) * [-1074.733] (-1083.349) (-1131.566) (-1075.786) -- 0:04:22
595000 -- (-1072.232) (-1081.649) [-1072.967] (-1132.743) * [-1065.889] (-1084.729) (-1135.393) (-1079.719) -- 0:04:22
Average standard deviation of split frequencies: 0.009584
596000 -- [-1072.016] (-1073.697) (-1087.951) (-1132.223) * (-1076.694) [-1071.576] (-1126.028) (-1081.577) -- 0:04:20
597000 -- [-1074.435] (-1081.616) (-1082.633) (-1124.337) * (-1082.735) [-1065.792] (-1135.071) (-1085.115) -- 0:04:20
598000 -- [-1072.507] (-1086.454) (-1087.216) (-1134.459) * (-1075.999) [-1077.433] (-1125.436) (-1083.200) -- 0:04:19
599000 -- [-1064.073] (-1084.350) (-1087.729) (-1121.699) * [-1085.743] (-1084.971) (-1135.408) (-1069.274) -- 0:04:19
600000 -- [-1082.170] (-1078.753) (-1084.982) (-1128.929) * (-1083.641) (-1077.950) (-1148.257) [-1073.205] -- 0:04:18
Average standard deviation of split frequencies: 0.009302
601000 -- [-1078.110] (-1086.365) (-1104.710) (-1141.810) * (-1087.494) [-1079.310] (-1141.820) (-1071.803) -- 0:04:17
602000 -- (-1088.488) (-1076.581) [-1076.769] (-1139.027) * [-1072.015] (-1076.207) (-1138.134) (-1089.316) -- 0:04:16
603000 -- (-1086.233) (-1071.038) [-1075.270] (-1152.826) * (-1072.732) [-1065.347] (-1143.396) (-1086.496) -- 0:04:16
604000 -- (-1079.249) (-1087.482) [-1073.202] (-1143.589) * [-1081.117] (-1086.969) (-1142.343) (-1073.175) -- 0:04:15
605000 -- (-1078.336) (-1091.943) [-1071.786] (-1137.046) * (-1076.483) (-1072.788) (-1125.546) [-1075.262] -- 0:04:14
Average standard deviation of split frequencies: 0.009490
606000 -- [-1074.301] (-1079.185) (-1076.473) (-1140.967) * (-1081.654) (-1083.653) (-1129.249) [-1070.954] -- 0:04:14
607000 -- [-1069.853] (-1073.951) (-1099.498) (-1125.629) * (-1068.878) (-1090.376) (-1131.692) [-1073.502] -- 0:04:13
608000 -- (-1076.773) [-1074.327] (-1087.286) (-1125.689) * [-1070.916] (-1085.418) (-1125.211) (-1081.003) -- 0:04:12
609000 -- [-1066.852] (-1085.315) (-1073.860) (-1131.397) * (-1090.243) [-1062.580] (-1134.315) (-1079.957) -- 0:04:11
610000 -- (-1075.500) (-1084.892) [-1084.899] (-1117.074) * (-1084.399) [-1065.596] (-1118.456) (-1088.696) -- 0:04:11
Average standard deviation of split frequencies: 0.009991
611000 -- (-1074.588) [-1067.344] (-1084.433) (-1127.883) * (-1071.890) [-1062.760] (-1129.872) (-1089.656) -- 0:04:10
612000 -- [-1065.161] (-1076.122) (-1094.791) (-1118.427) * (-1080.005) [-1070.021] (-1139.867) (-1075.198) -- 0:04:09
613000 -- [-1080.630] (-1072.289) (-1087.160) (-1123.047) * (-1079.613) [-1071.289] (-1128.041) (-1083.239) -- 0:04:08
614000 -- [-1071.902] (-1082.184) (-1078.253) (-1133.377) * (-1080.245) (-1091.505) (-1128.732) [-1078.974] -- 0:04:08
615000 -- (-1080.051) (-1078.701) [-1077.962] (-1133.778) * (-1078.128) (-1089.185) (-1125.958) [-1075.964] -- 0:04:07
Average standard deviation of split frequencies: 0.009948
616000 -- [-1073.128] (-1080.997) (-1082.071) (-1136.198) * (-1075.925) (-1094.830) (-1123.171) [-1078.434] -- 0:04:06
617000 -- (-1077.468) [-1068.720] (-1079.584) (-1122.476) * (-1077.847) (-1098.292) (-1119.239) [-1073.240] -- 0:04:06
618000 -- [-1069.498] (-1078.897) (-1077.753) (-1129.203) * (-1085.384) (-1098.517) (-1133.748) [-1066.073] -- 0:04:05
619000 -- (-1071.764) (-1071.410) [-1074.449] (-1131.509) * (-1086.845) (-1098.472) (-1132.810) [-1073.915] -- 0:04:04
620000 -- [-1075.176] (-1072.094) (-1087.296) (-1124.615) * (-1091.372) (-1074.811) (-1129.191) [-1073.519] -- 0:04:03
Average standard deviation of split frequencies: 0.009047
621000 -- [-1070.231] (-1073.462) (-1084.063) (-1125.278) * (-1078.639) (-1081.686) (-1132.887) [-1067.472] -- 0:04:03
622000 -- [-1082.361] (-1071.647) (-1081.926) (-1113.763) * (-1082.069) (-1072.655) (-1158.339) [-1070.970] -- 0:04:02
623000 -- (-1084.839) (-1065.546) [-1068.719] (-1123.671) * [-1073.385] (-1080.516) (-1128.767) (-1080.312) -- 0:04:02
624000 -- (-1077.293) [-1070.650] (-1088.201) (-1132.114) * [-1060.873] (-1084.120) (-1124.003) (-1083.810) -- 0:04:01
625000 -- [-1067.021] (-1072.747) (-1077.404) (-1125.444) * [-1068.146] (-1069.528) (-1130.588) (-1079.038) -- 0:04:00
Average standard deviation of split frequencies: 0.008594
626000 -- (-1075.155) [-1078.356] (-1094.240) (-1114.248) * [-1071.217] (-1083.569) (-1137.298) (-1077.076) -- 0:03:59
627000 -- (-1081.412) [-1074.917] (-1081.747) (-1123.509) * [-1080.620] (-1078.366) (-1144.850) (-1068.723) -- 0:03:59
628000 -- (-1069.733) (-1077.536) [-1071.356] (-1120.041) * (-1087.080) (-1071.171) (-1121.146) [-1082.809] -- 0:03:58
629000 -- (-1082.630) (-1079.605) [-1073.430] (-1119.496) * (-1104.190) (-1078.055) (-1123.706) [-1075.380] -- 0:03:57
630000 -- [-1070.329] (-1082.002) (-1070.301) (-1129.004) * (-1095.623) [-1067.250] (-1128.569) (-1073.919) -- 0:03:57
Average standard deviation of split frequencies: 0.008486
631000 -- (-1080.275) (-1079.225) [-1070.067] (-1122.119) * (-1084.673) [-1067.679] (-1127.751) (-1073.038) -- 0:03:56
632000 -- (-1092.342) (-1076.977) [-1072.113] (-1130.835) * (-1074.219) (-1081.533) (-1135.353) [-1077.043] -- 0:03:55
633000 -- (-1076.948) [-1081.801] (-1084.443) (-1126.760) * (-1067.478) (-1075.439) (-1118.424) [-1077.776] -- 0:03:54
634000 -- (-1077.386) [-1070.132] (-1083.304) (-1123.419) * (-1077.654) (-1067.908) (-1118.391) [-1067.098] -- 0:03:54
635000 -- (-1069.998) [-1067.026] (-1076.796) (-1127.687) * (-1082.208) (-1078.063) (-1130.897) [-1076.082] -- 0:03:53
Average standard deviation of split frequencies: 0.008480
636000 -- [-1080.364] (-1075.616) (-1071.678) (-1134.619) * (-1078.232) (-1073.443) (-1131.097) [-1065.159] -- 0:03:52
637000 -- [-1069.658] (-1069.737) (-1081.256) (-1128.304) * [-1072.701] (-1074.374) (-1123.262) (-1077.945) -- 0:03:51
638000 -- (-1082.032) (-1074.709) [-1074.479] (-1118.311) * (-1072.635) [-1069.374] (-1123.408) (-1072.628) -- 0:03:51
639000 -- (-1090.868) [-1076.852] (-1076.331) (-1120.161) * (-1088.207) [-1067.498] (-1118.511) (-1076.404) -- 0:03:50
640000 -- (-1086.782) (-1080.575) [-1075.465] (-1124.237) * (-1078.701) [-1070.194] (-1131.631) (-1082.723) -- 0:03:50
Average standard deviation of split frequencies: 0.009186
641000 -- (-1074.767) (-1093.008) [-1075.237] (-1125.029) * (-1075.506) [-1068.444] (-1128.599) (-1079.802) -- 0:03:49
642000 -- (-1079.189) (-1098.142) [-1076.865] (-1122.172) * (-1077.001) [-1067.404] (-1139.961) (-1073.661) -- 0:03:48
643000 -- (-1080.771) (-1085.109) [-1080.460] (-1140.225) * (-1081.524) [-1075.773] (-1125.738) (-1091.243) -- 0:03:48
644000 -- (-1086.459) (-1077.713) [-1078.473] (-1133.510) * (-1079.097) (-1087.248) (-1138.166) [-1073.992] -- 0:03:47
645000 -- (-1086.304) (-1084.443) [-1076.682] (-1128.361) * (-1081.597) (-1073.807) (-1136.240) [-1066.865] -- 0:03:46
Average standard deviation of split frequencies: 0.009894
646000 -- (-1075.835) (-1085.047) [-1071.708] (-1120.521) * (-1076.276) (-1088.281) (-1124.936) [-1081.673] -- 0:03:45
647000 -- (-1072.584) (-1090.713) [-1077.177] (-1127.278) * (-1074.126) [-1081.331] (-1122.903) (-1074.525) -- 0:03:45
648000 -- (-1075.834) (-1076.862) [-1068.178] (-1129.657) * (-1081.672) [-1067.826] (-1132.234) (-1080.531) -- 0:03:44
649000 -- (-1069.667) (-1075.345) [-1065.655] (-1123.652) * (-1074.740) (-1062.926) (-1126.155) [-1069.080] -- 0:03:43
650000 -- [-1065.683] (-1081.196) (-1076.883) (-1137.277) * (-1082.623) (-1070.666) (-1137.220) [-1071.611] -- 0:03:42
Average standard deviation of split frequencies: 0.010377
651000 -- [-1066.805] (-1091.068) (-1074.446) (-1120.977) * (-1083.435) [-1069.749] (-1129.320) (-1069.618) -- 0:03:42
652000 -- (-1076.199) (-1083.482) [-1083.857] (-1131.878) * (-1084.833) (-1078.748) (-1130.881) [-1073.801] -- 0:03:41
653000 -- [-1070.708] (-1082.152) (-1077.238) (-1125.178) * (-1079.736) [-1072.119] (-1139.712) (-1068.573) -- 0:03:41
654000 -- (-1067.821) (-1082.685) [-1065.130] (-1118.438) * (-1075.024) [-1089.328] (-1138.942) (-1080.588) -- 0:03:40
655000 -- (-1071.023) (-1087.717) [-1071.716] (-1119.613) * (-1073.925) [-1067.835] (-1148.475) (-1070.851) -- 0:03:39
Average standard deviation of split frequencies: 0.010695
656000 -- (-1082.106) (-1067.995) [-1078.165] (-1113.579) * (-1070.195) (-1081.624) (-1140.458) [-1071.213] -- 0:03:39
657000 -- [-1073.851] (-1070.663) (-1081.181) (-1127.855) * (-1080.794) (-1078.279) (-1130.205) [-1065.965] -- 0:03:38
658000 -- (-1081.754) [-1068.813] (-1073.276) (-1133.199) * (-1099.686) [-1068.023] (-1123.676) (-1088.931) -- 0:03:37
659000 -- [-1079.158] (-1073.829) (-1075.454) (-1132.888) * (-1089.772) [-1068.130] (-1126.492) (-1093.263) -- 0:03:36
660000 -- (-1088.977) (-1068.398) [-1071.098] (-1129.896) * (-1090.904) [-1075.822] (-1132.695) (-1082.534) -- 0:03:36
Average standard deviation of split frequencies: 0.010619
661000 -- (-1084.914) (-1067.370) [-1077.778] (-1130.478) * [-1079.371] (-1080.956) (-1140.619) (-1071.561) -- 0:03:35
662000 -- (-1086.103) (-1079.341) [-1074.468] (-1121.763) * (-1074.893) (-1076.732) (-1125.262) [-1071.929] -- 0:03:34
663000 -- (-1069.872) (-1076.297) [-1074.123] (-1132.748) * [-1076.811] (-1077.405) (-1145.814) (-1072.217) -- 0:03:33
664000 -- (-1080.951) (-1085.741) [-1071.670] (-1130.126) * (-1083.459) [-1079.027] (-1128.375) (-1073.066) -- 0:03:33
665000 -- (-1070.910) (-1087.855) [-1073.459] (-1124.268) * (-1078.448) (-1074.808) (-1135.362) [-1079.494] -- 0:03:32
Average standard deviation of split frequencies: 0.011034
666000 -- (-1078.668) (-1080.003) [-1071.920] (-1119.564) * (-1086.709) [-1076.294] (-1123.745) (-1072.588) -- 0:03:32
667000 -- (-1079.578) (-1083.462) [-1064.407] (-1119.331) * (-1074.564) [-1076.425] (-1129.818) (-1072.790) -- 0:03:31
668000 -- (-1087.460) [-1073.554] (-1078.931) (-1124.690) * [-1071.817] (-1080.969) (-1127.281) (-1075.162) -- 0:03:31
669000 -- (-1088.809) [-1079.436] (-1078.535) (-1119.262) * (-1075.091) (-1071.178) (-1120.064) [-1074.785] -- 0:03:30
670000 -- (-1088.207) [-1072.442] (-1075.916) (-1135.250) * (-1078.185) (-1071.964) (-1127.560) [-1077.909] -- 0:03:29
Average standard deviation of split frequencies: 0.011701
671000 -- (-1093.703) (-1070.356) [-1071.909] (-1143.561) * (-1095.413) (-1066.685) (-1128.062) [-1066.005] -- 0:03:29
672000 -- (-1085.919) (-1075.948) [-1079.337] (-1130.604) * (-1082.470) (-1081.828) (-1131.041) [-1071.595] -- 0:03:28
673000 -- (-1090.076) (-1078.473) [-1073.697] (-1133.220) * (-1090.955) [-1069.044] (-1134.646) (-1079.598) -- 0:03:28
674000 -- (-1085.547) (-1069.484) [-1077.722] (-1126.533) * (-1074.833) (-1078.028) (-1124.542) [-1070.230] -- 0:03:27
675000 -- (-1070.533) (-1078.516) [-1072.197] (-1133.668) * [-1066.352] (-1088.732) (-1133.004) (-1083.725) -- 0:03:27
Average standard deviation of split frequencies: 0.011609
676000 -- (-1076.203) [-1084.395] (-1086.578) (-1128.997) * [-1062.242] (-1075.622) (-1123.033) (-1077.913) -- 0:03:26
677000 -- (-1075.305) (-1080.308) [-1072.273] (-1120.330) * [-1066.524] (-1086.978) (-1120.079) (-1071.955) -- 0:03:26
678000 -- (-1083.085) (-1083.554) [-1066.631] (-1132.820) * [-1072.292] (-1071.305) (-1119.790) (-1079.290) -- 0:03:25
679000 -- (-1085.172) (-1068.740) [-1067.496] (-1131.811) * [-1070.408] (-1067.571) (-1124.210) (-1088.615) -- 0:03:25
680000 -- (-1079.018) (-1078.427) [-1077.690] (-1138.305) * [-1069.690] (-1062.705) (-1120.656) (-1073.752) -- 0:03:24
Average standard deviation of split frequencies: 0.010979
681000 -- (-1068.865) (-1079.482) [-1082.653] (-1130.376) * (-1086.545) (-1067.283) (-1133.168) [-1071.534] -- 0:03:24
682000 -- (-1075.634) [-1072.720] (-1080.516) (-1120.031) * (-1095.769) [-1072.705] (-1121.461) (-1073.075) -- 0:03:23
683000 -- (-1075.406) [-1075.605] (-1076.312) (-1135.805) * (-1083.965) (-1070.996) (-1130.550) [-1081.499] -- 0:03:22
684000 -- (-1084.340) (-1074.192) [-1066.508] (-1127.425) * [-1071.498] (-1079.423) (-1121.400) (-1076.502) -- 0:03:22
685000 -- (-1081.934) [-1071.896] (-1078.895) (-1119.384) * (-1077.286) (-1080.823) (-1140.794) [-1075.070] -- 0:03:21
Average standard deviation of split frequencies: 0.011440
686000 -- (-1078.097) (-1077.488) [-1073.575] (-1126.770) * [-1071.823] (-1078.778) (-1130.902) (-1094.437) -- 0:03:21
687000 -- (-1073.402) (-1067.492) [-1072.638] (-1142.161) * (-1079.952) (-1077.313) (-1121.602) [-1073.802] -- 0:03:20
688000 -- [-1074.049] (-1073.714) (-1073.374) (-1130.963) * (-1081.734) [-1070.684] (-1121.688) (-1094.341) -- 0:03:20
689000 -- [-1068.739] (-1082.530) (-1082.289) (-1128.436) * (-1070.979) [-1069.667] (-1128.357) (-1079.015) -- 0:03:19
690000 -- [-1071.408] (-1092.494) (-1085.295) (-1119.179) * (-1081.049) [-1069.868] (-1135.284) (-1094.729) -- 0:03:19
Average standard deviation of split frequencies: 0.010800
691000 -- [-1068.247] (-1088.376) (-1071.756) (-1127.747) * (-1083.862) [-1079.237] (-1132.881) (-1074.122) -- 0:03:18
692000 -- [-1067.377] (-1070.966) (-1088.866) (-1124.740) * (-1071.324) [-1069.411] (-1127.685) (-1066.143) -- 0:03:18
693000 -- (-1083.402) [-1068.565] (-1095.366) (-1127.242) * (-1081.631) [-1068.848] (-1128.002) (-1099.074) -- 0:03:17
694000 -- (-1068.693) [-1080.137] (-1076.856) (-1139.070) * (-1086.951) [-1074.025] (-1128.826) (-1084.212) -- 0:03:17
695000 -- [-1070.046] (-1069.758) (-1079.108) (-1127.662) * [-1079.577] (-1090.958) (-1132.984) (-1084.414) -- 0:03:16
Average standard deviation of split frequencies: 0.010219
696000 -- (-1074.524) (-1080.759) [-1075.718] (-1132.321) * [-1075.492] (-1071.642) (-1130.082) (-1095.950) -- 0:03:16
697000 -- (-1089.438) (-1092.459) [-1070.867] (-1133.158) * [-1075.464] (-1083.957) (-1129.578) (-1081.139) -- 0:03:15
698000 -- (-1078.630) (-1077.583) [-1075.150] (-1141.344) * (-1082.189) [-1076.222] (-1121.445) (-1071.364) -- 0:03:14
699000 -- [-1074.243] (-1089.054) (-1069.896) (-1127.848) * (-1078.202) (-1068.298) (-1136.923) [-1069.748] -- 0:03:14
700000 -- [-1073.034] (-1082.049) (-1082.961) (-1123.669) * (-1088.546) (-1074.777) (-1121.824) [-1068.700] -- 0:03:13
Average standard deviation of split frequencies: 0.010290
701000 -- (-1077.736) [-1088.816] (-1094.217) (-1116.899) * (-1073.262) (-1081.999) (-1138.235) [-1074.167] -- 0:03:13
702000 -- [-1064.539] (-1068.872) (-1086.752) (-1132.531) * (-1077.113) (-1082.072) (-1143.292) [-1072.326] -- 0:03:12
703000 -- (-1069.252) [-1066.816] (-1082.908) (-1128.508) * (-1086.035) (-1072.297) (-1132.031) [-1067.932] -- 0:03:11
704000 -- [-1067.904] (-1073.273) (-1085.493) (-1126.344) * (-1090.194) [-1068.728] (-1127.231) (-1081.006) -- 0:03:11
705000 -- [-1070.830] (-1072.283) (-1093.521) (-1121.020) * [-1066.454] (-1099.854) (-1127.917) (-1090.200) -- 0:03:10
Average standard deviation of split frequencies: 0.009844
706000 -- (-1069.287) [-1068.719] (-1070.033) (-1126.961) * (-1063.541) (-1106.463) (-1129.231) [-1073.893] -- 0:03:09
707000 -- [-1074.779] (-1081.733) (-1074.686) (-1136.943) * [-1070.057] (-1082.287) (-1124.167) (-1075.058) -- 0:03:09
708000 -- [-1077.455] (-1072.093) (-1080.666) (-1138.074) * (-1078.611) (-1090.143) (-1122.694) [-1072.783] -- 0:03:08
709000 -- [-1070.472] (-1082.864) (-1077.171) (-1131.234) * (-1082.169) (-1084.651) (-1120.580) [-1071.051] -- 0:03:07
710000 -- (-1081.085) [-1064.265] (-1082.372) (-1128.297) * [-1065.433] (-1082.903) (-1128.630) (-1074.949) -- 0:03:07
Average standard deviation of split frequencies: 0.010102
711000 -- (-1080.610) [-1068.388] (-1086.893) (-1136.426) * [-1076.008] (-1079.999) (-1129.059) (-1085.117) -- 0:03:06
712000 -- [-1064.437] (-1081.303) (-1088.141) (-1131.714) * [-1084.163] (-1077.816) (-1120.467) (-1064.214) -- 0:03:05
713000 -- [-1073.776] (-1085.605) (-1072.556) (-1129.401) * (-1077.404) (-1075.357) (-1133.171) [-1062.312] -- 0:03:05
714000 -- [-1071.499] (-1069.007) (-1084.831) (-1132.739) * (-1089.017) (-1064.988) (-1126.371) [-1066.560] -- 0:03:04
715000 -- [-1075.292] (-1081.804) (-1070.895) (-1131.322) * [-1075.673] (-1069.060) (-1128.723) (-1077.921) -- 0:03:03
Average standard deviation of split frequencies: 0.010007
716000 -- [-1070.161] (-1083.709) (-1085.486) (-1136.960) * [-1068.528] (-1093.974) (-1129.425) (-1072.935) -- 0:03:02
717000 -- [-1075.125] (-1087.343) (-1071.309) (-1118.548) * [-1068.326] (-1084.471) (-1129.248) (-1076.564) -- 0:03:02
718000 -- (-1082.911) (-1077.377) [-1072.117] (-1124.842) * [-1066.814] (-1075.406) (-1142.290) (-1096.491) -- 0:03:01
719000 -- [-1081.408] (-1099.426) (-1075.262) (-1141.835) * [-1068.765] (-1092.031) (-1128.786) (-1082.365) -- 0:03:01
720000 -- [-1065.723] (-1076.488) (-1094.784) (-1132.329) * (-1068.776) [-1078.547] (-1121.274) (-1076.850) -- 0:03:00
Average standard deviation of split frequencies: 0.009924
721000 -- (-1077.595) (-1073.937) [-1079.327] (-1136.090) * (-1079.909) (-1080.809) (-1132.477) [-1072.692] -- 0:02:59
722000 -- [-1075.370] (-1084.020) (-1071.822) (-1138.145) * (-1076.163) (-1074.674) (-1137.365) [-1077.471] -- 0:02:59
723000 -- (-1090.691) [-1074.526] (-1067.064) (-1142.476) * [-1074.436] (-1083.058) (-1129.272) (-1081.433) -- 0:02:58
724000 -- (-1084.818) [-1078.913] (-1072.795) (-1133.149) * (-1088.557) (-1077.198) (-1134.326) [-1080.172] -- 0:02:58
725000 -- (-1072.696) [-1076.984] (-1085.074) (-1131.629) * [-1075.450] (-1072.208) (-1134.965) (-1080.216) -- 0:02:57
Average standard deviation of split frequencies: 0.009999
726000 -- (-1081.275) [-1073.440] (-1071.146) (-1126.864) * (-1079.693) [-1070.228] (-1133.032) (-1093.062) -- 0:02:57
727000 -- (-1110.362) [-1067.963] (-1083.980) (-1124.479) * (-1079.665) [-1066.450] (-1122.687) (-1074.113) -- 0:02:56
728000 -- (-1093.149) (-1080.148) [-1063.520] (-1124.425) * [-1072.648] (-1078.691) (-1146.546) (-1073.449) -- 0:02:56
729000 -- (-1075.433) (-1077.378) [-1067.312] (-1130.629) * (-1078.441) [-1068.966] (-1137.733) (-1080.055) -- 0:02:55
730000 -- (-1082.672) (-1067.454) [-1065.115] (-1125.773) * (-1074.804) [-1060.213] (-1127.924) (-1075.335) -- 0:02:54
Average standard deviation of split frequencies: 0.009770
731000 -- (-1067.827) (-1078.158) [-1078.874] (-1129.742) * [-1084.882] (-1082.152) (-1140.980) (-1077.738) -- 0:02:54
732000 -- (-1082.471) (-1074.705) [-1066.447] (-1138.061) * [-1070.950] (-1085.870) (-1129.254) (-1073.430) -- 0:02:53
733000 -- (-1087.728) (-1093.390) [-1064.506] (-1136.430) * (-1073.110) (-1076.483) (-1140.922) [-1072.933] -- 0:02:53
734000 -- (-1084.624) (-1088.161) [-1078.992] (-1132.653) * [-1088.376] (-1082.336) (-1131.068) (-1103.028) -- 0:02:52
735000 -- (-1074.570) (-1079.265) [-1068.441] (-1123.288) * [-1074.109] (-1082.252) (-1121.779) (-1084.289) -- 0:02:51
Average standard deviation of split frequencies: 0.009534
736000 -- (-1069.810) (-1074.596) [-1078.704] (-1126.940) * [-1074.750] (-1090.691) (-1125.189) (-1081.014) -- 0:02:51
737000 -- (-1082.844) (-1070.845) [-1077.253] (-1125.817) * [-1082.571] (-1085.562) (-1124.630) (-1071.002) -- 0:02:50
738000 -- (-1083.759) (-1080.706) [-1080.145] (-1125.259) * (-1071.665) (-1084.244) (-1117.758) [-1065.417] -- 0:02:50
739000 -- (-1095.181) (-1069.815) [-1077.343] (-1131.374) * (-1080.778) (-1078.829) (-1133.093) [-1073.747] -- 0:02:49
740000 -- (-1077.839) (-1099.075) [-1081.228] (-1127.571) * [-1077.739] (-1071.540) (-1135.094) (-1083.664) -- 0:02:49
Average standard deviation of split frequencies: 0.009165
741000 -- (-1082.120) (-1072.827) [-1070.581] (-1134.017) * (-1067.615) [-1074.309] (-1134.824) (-1080.239) -- 0:02:48
742000 -- (-1078.390) [-1076.129] (-1075.543) (-1135.546) * (-1082.545) [-1079.186] (-1124.501) (-1064.354) -- 0:02:47
743000 -- (-1081.200) (-1081.698) [-1069.516] (-1128.059) * (-1075.471) (-1075.945) (-1147.575) [-1083.800] -- 0:02:47
744000 -- (-1073.224) (-1075.835) [-1074.183] (-1137.270) * (-1073.182) [-1075.928] (-1131.891) (-1097.034) -- 0:02:46
745000 -- (-1073.736) (-1076.692) [-1071.974] (-1143.488) * (-1062.050) [-1067.499] (-1133.312) (-1084.423) -- 0:02:46
Average standard deviation of split frequencies: 0.008901
746000 -- (-1083.267) (-1066.740) [-1067.149] (-1125.020) * (-1083.073) [-1068.584] (-1129.594) (-1086.963) -- 0:02:45
747000 -- [-1079.324] (-1074.933) (-1075.082) (-1139.850) * [-1075.650] (-1078.242) (-1124.813) (-1090.201) -- 0:02:44
748000 -- (-1083.845) [-1069.897] (-1080.881) (-1125.647) * (-1074.512) [-1069.019] (-1141.161) (-1090.215) -- 0:02:44
749000 -- (-1070.689) (-1070.447) [-1074.090] (-1130.797) * (-1074.293) [-1068.362] (-1140.024) (-1075.518) -- 0:02:43
750000 -- (-1083.413) (-1074.957) [-1069.735] (-1132.614) * (-1085.541) (-1070.076) (-1124.276) [-1068.570] -- 0:02:43
Average standard deviation of split frequencies: 0.008702
751000 -- (-1063.733) (-1080.856) [-1073.421] (-1128.366) * (-1068.743) [-1069.780] (-1137.625) (-1093.401) -- 0:02:42
752000 -- (-1075.992) (-1090.501) [-1074.550] (-1132.883) * (-1066.566) [-1067.825] (-1128.189) (-1083.592) -- 0:02:42
753000 -- (-1070.305) (-1085.786) [-1082.180] (-1141.598) * (-1071.311) [-1070.794] (-1138.743) (-1089.765) -- 0:02:41
754000 -- (-1066.561) [-1078.092] (-1073.490) (-1129.447) * (-1081.010) (-1082.633) (-1138.638) [-1075.463] -- 0:02:40
755000 -- [-1066.805] (-1092.635) (-1081.430) (-1132.120) * [-1064.068] (-1070.601) (-1142.017) (-1078.474) -- 0:02:40
Average standard deviation of split frequencies: 0.008552
756000 -- [-1071.647] (-1078.124) (-1066.458) (-1128.500) * [-1072.558] (-1077.722) (-1136.591) (-1086.520) -- 0:02:39
757000 -- (-1069.438) [-1077.205] (-1073.846) (-1122.399) * [-1071.882] (-1079.964) (-1131.485) (-1073.554) -- 0:02:39
758000 -- (-1071.327) (-1082.382) [-1074.068] (-1126.198) * [-1064.866] (-1083.592) (-1126.224) (-1069.214) -- 0:02:38
759000 -- (-1084.755) (-1083.902) [-1084.311] (-1126.361) * (-1075.130) (-1086.175) (-1133.137) [-1079.922] -- 0:02:37
760000 -- [-1063.926] (-1066.723) (-1080.483) (-1125.784) * [-1069.091] (-1080.034) (-1125.822) (-1075.578) -- 0:02:37
Average standard deviation of split frequencies: 0.008418
761000 -- [-1071.648] (-1076.395) (-1090.512) (-1128.827) * (-1073.372) (-1080.439) (-1133.859) [-1066.416] -- 0:02:36
762000 -- (-1080.798) [-1077.878] (-1083.416) (-1129.227) * [-1069.797] (-1093.341) (-1125.911) (-1070.797) -- 0:02:36
763000 -- (-1076.519) (-1072.375) [-1073.145] (-1135.039) * (-1077.086) (-1080.540) (-1118.093) [-1063.680] -- 0:02:35
764000 -- (-1080.913) (-1076.515) [-1075.193] (-1129.139) * (-1098.129) [-1079.642] (-1122.075) (-1074.380) -- 0:02:35
765000 -- (-1073.918) (-1066.528) [-1074.680] (-1153.485) * (-1077.409) [-1076.294] (-1112.593) (-1077.789) -- 0:02:34
Average standard deviation of split frequencies: 0.008462
766000 -- (-1076.838) (-1063.614) [-1069.537] (-1147.046) * (-1076.818) [-1079.007] (-1134.203) (-1086.659) -- 0:02:33
767000 -- (-1096.815) [-1062.994] (-1072.511) (-1143.816) * (-1076.213) [-1066.334] (-1130.386) (-1061.754) -- 0:02:33
768000 -- (-1086.216) (-1066.146) [-1076.557] (-1126.757) * (-1075.784) [-1070.395] (-1123.343) (-1073.892) -- 0:02:32
769000 -- (-1089.777) [-1073.644] (-1071.971) (-1119.662) * (-1069.089) [-1068.813] (-1116.919) (-1072.031) -- 0:02:31
770000 -- (-1088.468) (-1071.600) [-1068.047] (-1130.037) * [-1065.925] (-1077.859) (-1121.600) (-1078.423) -- 0:02:31
Average standard deviation of split frequencies: 0.008092
771000 -- (-1093.817) [-1072.539] (-1078.681) (-1126.860) * (-1074.252) [-1073.269] (-1129.081) (-1075.109) -- 0:02:30
772000 -- (-1088.351) (-1077.441) [-1077.125] (-1122.518) * (-1081.149) [-1072.483] (-1133.324) (-1085.233) -- 0:02:30
773000 -- (-1090.696) [-1070.211] (-1085.914) (-1127.889) * (-1087.595) (-1077.835) (-1127.276) [-1086.181] -- 0:02:29
774000 -- (-1084.284) (-1076.238) [-1067.502] (-1136.430) * (-1082.215) (-1075.757) (-1138.934) [-1076.665] -- 0:02:28
775000 -- (-1088.673) (-1076.015) [-1068.931] (-1129.738) * (-1084.942) [-1068.661] (-1131.007) (-1076.156) -- 0:02:28
Average standard deviation of split frequencies: 0.008192
776000 -- (-1088.254) [-1071.840] (-1077.113) (-1129.531) * (-1078.540) (-1070.182) (-1136.608) [-1078.693] -- 0:02:27
777000 -- (-1092.321) (-1090.011) [-1082.013] (-1128.019) * (-1084.376) [-1074.686] (-1120.560) (-1078.580) -- 0:02:27
778000 -- (-1090.610) (-1098.666) [-1075.195] (-1128.474) * (-1072.604) [-1073.108] (-1118.132) (-1073.418) -- 0:02:26
779000 -- (-1079.985) (-1084.881) [-1067.035] (-1136.677) * (-1091.664) [-1077.379] (-1121.556) (-1071.305) -- 0:02:25
780000 -- (-1087.502) [-1073.621] (-1080.832) (-1136.171) * (-1090.027) [-1064.452] (-1127.985) (-1073.848) -- 0:02:25
Average standard deviation of split frequencies: 0.008333
781000 -- (-1074.944) [-1072.790] (-1091.234) (-1136.513) * (-1090.733) [-1068.104] (-1127.178) (-1074.149) -- 0:02:24
782000 -- (-1073.429) [-1074.124] (-1071.137) (-1129.901) * (-1090.194) [-1069.379] (-1126.992) (-1083.544) -- 0:02:24
783000 -- (-1075.425) [-1062.574] (-1079.806) (-1124.596) * (-1094.182) [-1071.433] (-1128.864) (-1074.780) -- 0:02:23
784000 -- (-1079.072) [-1070.269] (-1077.910) (-1129.894) * (-1078.487) [-1073.288] (-1129.117) (-1071.792) -- 0:02:22
785000 -- (-1074.575) (-1078.469) [-1077.169] (-1130.460) * (-1079.412) [-1072.886] (-1125.111) (-1072.288) -- 0:02:22
Average standard deviation of split frequencies: 0.009013
786000 -- [-1070.262] (-1072.574) (-1085.631) (-1131.603) * (-1084.717) [-1070.028] (-1125.799) (-1070.554) -- 0:02:21
787000 -- (-1077.240) (-1078.857) [-1077.519] (-1134.828) * (-1078.289) (-1083.955) (-1130.670) [-1070.266] -- 0:02:21
788000 -- (-1078.563) [-1075.325] (-1078.469) (-1128.135) * (-1083.752) (-1078.903) (-1129.139) [-1069.338] -- 0:02:20
789000 -- (-1080.452) [-1072.935] (-1080.018) (-1127.391) * [-1070.974] (-1082.659) (-1128.937) (-1082.606) -- 0:02:19
790000 -- (-1082.298) [-1071.638] (-1086.950) (-1120.467) * [-1079.097] (-1094.154) (-1121.889) (-1070.309) -- 0:02:19
Average standard deviation of split frequencies: 0.008705
791000 -- [-1066.587] (-1075.844) (-1079.722) (-1135.081) * (-1090.657) [-1079.039] (-1121.682) (-1080.875) -- 0:02:18
792000 -- [-1076.857] (-1071.828) (-1082.328) (-1124.512) * (-1084.466) [-1079.663] (-1134.306) (-1073.491) -- 0:02:17
793000 -- (-1075.394) [-1077.013] (-1073.556) (-1144.079) * (-1089.545) [-1079.276] (-1133.632) (-1081.018) -- 0:02:17
794000 -- [-1072.362] (-1074.919) (-1079.021) (-1138.231) * (-1084.944) (-1076.722) (-1137.391) [-1077.829] -- 0:02:16
795000 -- [-1080.885] (-1068.924) (-1088.993) (-1136.351) * (-1083.445) [-1071.880] (-1124.946) (-1085.303) -- 0:02:16
Average standard deviation of split frequencies: 0.008613
796000 -- (-1079.649) [-1079.213] (-1091.976) (-1127.916) * [-1077.408] (-1073.437) (-1128.741) (-1080.667) -- 0:02:15
797000 -- [-1076.430] (-1070.018) (-1087.604) (-1136.936) * (-1068.477) [-1074.514] (-1119.076) (-1089.071) -- 0:02:14
798000 -- [-1071.676] (-1074.854) (-1072.663) (-1133.871) * [-1070.665] (-1078.610) (-1121.738) (-1082.793) -- 0:02:14
799000 -- [-1073.484] (-1073.534) (-1088.486) (-1132.485) * [-1070.450] (-1078.757) (-1129.424) (-1078.954) -- 0:02:13
800000 -- [-1078.909] (-1074.743) (-1079.254) (-1132.333) * (-1079.032) (-1076.720) (-1133.552) [-1079.776] -- 0:02:13
Average standard deviation of split frequencies: 0.008344
801000 -- [-1069.652] (-1074.560) (-1092.417) (-1133.808) * (-1081.358) (-1076.425) (-1131.927) [-1071.368] -- 0:02:12
802000 -- [-1066.373] (-1064.942) (-1084.842) (-1137.307) * (-1080.631) (-1073.016) (-1144.394) [-1070.990] -- 0:02:11
803000 -- [-1080.169] (-1076.472) (-1079.676) (-1128.993) * (-1083.258) (-1085.320) (-1124.097) [-1067.244] -- 0:02:11
804000 -- (-1083.005) [-1070.197] (-1077.883) (-1126.253) * (-1079.312) (-1076.852) (-1122.606) [-1073.437] -- 0:02:10
805000 -- (-1086.765) [-1064.800] (-1080.506) (-1129.398) * (-1082.883) [-1067.468] (-1128.790) (-1079.165) -- 0:02:09
Average standard deviation of split frequencies: 0.008171
806000 -- (-1077.479) [-1064.842] (-1085.933) (-1136.696) * (-1075.839) (-1076.341) (-1130.543) [-1073.339] -- 0:02:09
807000 -- [-1081.475] (-1080.388) (-1069.988) (-1131.326) * (-1064.287) (-1076.752) (-1130.819) [-1066.039] -- 0:02:08
808000 -- (-1079.847) (-1071.009) [-1071.374] (-1130.500) * (-1078.743) (-1084.784) (-1127.347) [-1070.318] -- 0:02:08
809000 -- (-1090.122) [-1079.228] (-1065.985) (-1127.144) * (-1074.936) (-1092.059) (-1126.278) [-1069.319] -- 0:02:07
810000 -- (-1090.402) [-1074.527] (-1067.691) (-1114.736) * (-1073.300) (-1099.399) (-1136.517) [-1066.728] -- 0:02:06
Average standard deviation of split frequencies: 0.008091
811000 -- (-1093.597) (-1081.191) [-1069.767] (-1131.579) * (-1072.861) (-1090.237) (-1137.187) [-1070.978] -- 0:02:06
812000 -- [-1077.996] (-1081.839) (-1091.030) (-1129.968) * (-1076.677) (-1080.094) (-1129.052) [-1067.476] -- 0:02:05
813000 -- [-1065.970] (-1078.217) (-1086.398) (-1130.650) * (-1094.155) [-1075.730] (-1126.187) (-1077.671) -- 0:02:04
814000 -- [-1073.699] (-1073.445) (-1089.998) (-1134.910) * (-1084.673) (-1081.649) (-1126.371) [-1068.252] -- 0:02:04
815000 -- (-1083.151) [-1067.194] (-1094.211) (-1129.732) * (-1085.509) [-1083.549] (-1128.885) (-1071.630) -- 0:02:03
Average standard deviation of split frequencies: 0.008569
816000 -- (-1093.124) [-1072.235] (-1075.170) (-1133.488) * (-1076.726) (-1085.505) (-1124.541) [-1081.534] -- 0:02:03
817000 -- [-1065.425] (-1075.004) (-1070.111) (-1121.938) * (-1078.168) [-1067.786] (-1127.753) (-1077.940) -- 0:02:02
818000 -- (-1063.967) (-1085.749) [-1075.298] (-1125.600) * (-1076.676) (-1078.452) (-1138.048) [-1072.526] -- 0:02:01
819000 -- [-1074.632] (-1073.766) (-1077.790) (-1129.237) * (-1066.554) [-1074.660] (-1140.736) (-1098.588) -- 0:02:01
820000 -- [-1086.312] (-1090.577) (-1073.143) (-1130.671) * [-1071.358] (-1078.557) (-1128.876) (-1090.924) -- 0:02:00
Average standard deviation of split frequencies: 0.008354
821000 -- [-1071.042] (-1090.180) (-1069.990) (-1124.279) * (-1071.165) (-1092.284) (-1132.699) [-1074.227] -- 0:01:59
822000 -- (-1072.481) [-1076.758] (-1086.163) (-1130.050) * (-1070.779) (-1076.822) (-1134.699) [-1081.997] -- 0:01:59
823000 -- (-1075.648) [-1079.018] (-1073.834) (-1124.863) * [-1065.413] (-1078.760) (-1131.213) (-1077.148) -- 0:01:58
824000 -- [-1079.000] (-1081.284) (-1080.192) (-1122.053) * (-1082.801) [-1077.500] (-1129.484) (-1078.993) -- 0:01:57
825000 -- (-1074.938) [-1075.674] (-1085.427) (-1127.542) * [-1080.894] (-1078.895) (-1128.285) (-1072.806) -- 0:01:57
Average standard deviation of split frequencies: 0.008148
826000 -- (-1077.434) (-1092.942) [-1078.896] (-1130.223) * [-1069.872] (-1075.752) (-1120.159) (-1080.202) -- 0:01:56
827000 -- [-1072.153] (-1078.342) (-1085.435) (-1120.374) * [-1075.780] (-1080.463) (-1119.687) (-1092.534) -- 0:01:56
828000 -- [-1067.408] (-1081.886) (-1085.618) (-1133.148) * (-1073.606) [-1075.438] (-1126.770) (-1072.593) -- 0:01:55
829000 -- [-1070.004] (-1080.089) (-1085.579) (-1127.442) * (-1080.669) (-1081.288) (-1128.350) [-1073.411] -- 0:01:54
830000 -- [-1073.800] (-1079.903) (-1083.468) (-1140.853) * (-1073.419) [-1074.523] (-1135.586) (-1072.062) -- 0:01:54
Average standard deviation of split frequencies: 0.008040
831000 -- (-1075.744) [-1073.631] (-1088.054) (-1129.659) * [-1069.673] (-1070.844) (-1132.155) (-1079.066) -- 0:01:53
832000 -- [-1080.501] (-1082.082) (-1085.871) (-1127.894) * (-1072.845) [-1072.096] (-1136.980) (-1089.461) -- 0:01:52
833000 -- [-1079.027] (-1077.530) (-1085.023) (-1133.010) * [-1072.095] (-1088.687) (-1126.003) (-1085.462) -- 0:01:52
834000 -- (-1074.714) (-1084.542) [-1075.309] (-1125.019) * (-1077.525) [-1066.521] (-1137.287) (-1091.905) -- 0:01:51
835000 -- [-1076.539] (-1083.746) (-1068.131) (-1129.622) * (-1080.487) [-1082.277] (-1130.262) (-1086.699) -- 0:01:51
Average standard deviation of split frequencies: 0.008396
836000 -- (-1074.398) (-1090.255) [-1065.341] (-1130.772) * (-1081.425) [-1075.710] (-1128.160) (-1079.939) -- 0:01:50
837000 -- (-1081.249) (-1074.194) [-1067.261] (-1131.660) * (-1078.631) (-1072.653) (-1129.232) [-1069.939] -- 0:01:49
838000 -- (-1078.456) [-1067.404] (-1073.066) (-1125.284) * (-1072.116) (-1081.857) (-1128.038) [-1070.093] -- 0:01:49
839000 -- (-1093.742) [-1070.585] (-1067.495) (-1126.442) * (-1068.082) (-1086.716) (-1126.438) [-1071.691] -- 0:01:48
840000 -- (-1076.440) [-1075.199] (-1086.901) (-1129.297) * (-1082.185) (-1087.663) (-1131.712) [-1070.425] -- 0:01:47
Average standard deviation of split frequencies: 0.007804
841000 -- (-1083.863) [-1073.594] (-1082.796) (-1144.010) * (-1076.673) (-1085.069) (-1140.279) [-1065.158] -- 0:01:47
842000 -- (-1083.422) [-1072.412] (-1083.484) (-1137.336) * (-1086.023) (-1080.395) (-1128.483) [-1076.249] -- 0:01:46
843000 -- (-1082.704) [-1071.375] (-1073.682) (-1131.453) * [-1079.193] (-1072.818) (-1132.115) (-1076.941) -- 0:01:45
844000 -- (-1074.945) (-1087.419) [-1073.960] (-1135.576) * [-1076.763] (-1074.820) (-1130.047) (-1065.311) -- 0:01:45
845000 -- (-1071.494) [-1078.416] (-1075.867) (-1124.385) * (-1065.763) (-1075.806) (-1126.675) [-1076.084] -- 0:01:44
Average standard deviation of split frequencies: 0.007321
846000 -- [-1071.672] (-1072.326) (-1076.588) (-1134.647) * (-1077.292) (-1080.417) (-1127.821) [-1066.227] -- 0:01:43
847000 -- (-1075.769) (-1086.670) [-1066.618] (-1128.877) * (-1071.628) (-1090.724) (-1137.496) [-1068.945] -- 0:01:43
848000 -- [-1072.622] (-1076.525) (-1077.854) (-1115.890) * (-1081.512) (-1074.525) (-1139.047) [-1077.705] -- 0:01:42
849000 -- [-1065.235] (-1076.320) (-1087.473) (-1129.313) * (-1073.411) (-1084.401) (-1134.006) [-1064.466] -- 0:01:42
850000 -- [-1077.975] (-1082.560) (-1090.629) (-1135.865) * (-1077.065) (-1077.913) (-1123.060) [-1071.233] -- 0:01:41
Average standard deviation of split frequencies: 0.006942
851000 -- [-1069.793] (-1070.008) (-1068.891) (-1127.619) * (-1071.855) [-1070.477] (-1128.246) (-1076.540) -- 0:01:40
852000 -- (-1066.654) [-1062.812] (-1075.086) (-1140.408) * (-1082.262) [-1070.521] (-1126.368) (-1069.078) -- 0:01:40
853000 -- (-1077.780) (-1070.702) [-1072.818] (-1119.809) * (-1074.965) [-1076.160] (-1139.725) (-1074.151) -- 0:01:39
854000 -- [-1085.859] (-1066.131) (-1073.971) (-1141.584) * (-1079.267) (-1087.952) (-1133.756) [-1081.551] -- 0:01:38
855000 -- (-1085.333) [-1069.942] (-1080.803) (-1136.601) * (-1070.220) [-1067.661] (-1128.812) (-1084.656) -- 0:01:38
Average standard deviation of split frequencies: 0.007205
856000 -- (-1086.514) [-1071.006] (-1074.108) (-1128.803) * [-1071.077] (-1081.675) (-1138.884) (-1087.543) -- 0:01:37
857000 -- (-1092.621) [-1072.432] (-1084.312) (-1122.782) * [-1080.984] (-1068.373) (-1134.211) (-1079.095) -- 0:01:36
858000 -- [-1080.809] (-1080.876) (-1076.397) (-1130.497) * (-1069.113) [-1076.698] (-1126.706) (-1077.539) -- 0:01:36
859000 -- [-1075.153] (-1073.933) (-1074.876) (-1140.868) * [-1074.245] (-1072.033) (-1132.036) (-1091.054) -- 0:01:35
860000 -- (-1080.443) [-1074.863] (-1068.829) (-1119.446) * (-1076.924) [-1073.593] (-1128.971) (-1093.135) -- 0:01:34
Average standard deviation of split frequencies: 0.007653
861000 -- (-1079.215) [-1068.507] (-1076.113) (-1130.166) * [-1065.916] (-1081.629) (-1121.212) (-1067.052) -- 0:01:34
862000 -- (-1077.631) (-1075.952) [-1066.748] (-1118.706) * [-1065.087] (-1084.442) (-1141.438) (-1066.358) -- 0:01:33
863000 -- [-1075.048] (-1069.232) (-1069.044) (-1133.025) * [-1075.378] (-1074.988) (-1137.336) (-1069.833) -- 0:01:32
864000 -- (-1072.597) (-1085.679) [-1074.196] (-1128.510) * (-1069.435) [-1074.688] (-1129.884) (-1084.378) -- 0:01:32
865000 -- [-1076.167] (-1081.335) (-1082.617) (-1127.654) * [-1068.379] (-1083.252) (-1126.022) (-1082.186) -- 0:01:31
Average standard deviation of split frequencies: 0.008014
866000 -- (-1081.501) [-1066.876] (-1065.668) (-1136.005) * (-1076.309) (-1094.427) (-1139.760) [-1079.117] -- 0:01:30
867000 -- (-1082.675) (-1069.527) [-1076.472] (-1128.773) * (-1079.723) (-1087.550) (-1128.289) [-1076.242] -- 0:01:30
868000 -- (-1077.648) [-1073.506] (-1075.784) (-1129.057) * (-1082.489) (-1074.536) (-1130.736) [-1079.802] -- 0:01:29
869000 -- (-1076.878) (-1098.902) [-1073.337] (-1128.244) * [-1068.615] (-1090.490) (-1123.400) (-1067.105) -- 0:01:28
870000 -- (-1067.515) (-1083.291) [-1073.233] (-1129.277) * (-1071.260) (-1076.217) (-1132.265) [-1074.529] -- 0:01:28
Average standard deviation of split frequencies: 0.009084
871000 -- [-1078.976] (-1094.523) (-1078.895) (-1140.254) * (-1078.570) (-1071.836) (-1137.171) [-1070.313] -- 0:01:27
872000 -- [-1074.319] (-1090.164) (-1077.796) (-1133.313) * [-1067.443] (-1087.025) (-1120.015) (-1075.392) -- 0:01:27
873000 -- [-1068.269] (-1101.431) (-1079.887) (-1131.801) * [-1074.963] (-1076.067) (-1127.889) (-1076.581) -- 0:01:26
874000 -- [-1070.521] (-1077.266) (-1072.744) (-1139.104) * (-1075.777) [-1067.210] (-1126.391) (-1077.832) -- 0:01:25
875000 -- (-1076.391) (-1084.647) [-1074.307] (-1117.116) * (-1078.958) [-1071.630] (-1122.636) (-1081.259) -- 0:01:25
Average standard deviation of split frequencies: 0.009462
876000 -- (-1070.889) (-1089.898) [-1067.686] (-1119.791) * (-1077.480) [-1087.393] (-1130.161) (-1083.635) -- 0:01:24
877000 -- (-1072.723) (-1089.447) [-1066.655] (-1121.365) * (-1087.161) [-1070.846] (-1125.555) (-1076.743) -- 0:01:23
878000 -- (-1082.899) (-1075.683) [-1067.353] (-1128.811) * [-1073.195] (-1082.153) (-1138.942) (-1081.879) -- 0:01:23
879000 -- (-1071.311) (-1086.101) [-1069.970] (-1130.095) * (-1084.752) (-1076.838) (-1127.107) [-1081.689] -- 0:01:22
880000 -- (-1066.959) (-1087.799) [-1073.043] (-1126.702) * [-1069.656] (-1073.951) (-1121.448) (-1083.010) -- 0:01:21
Average standard deviation of split frequencies: 0.009819
881000 -- (-1084.202) [-1073.038] (-1077.149) (-1129.972) * (-1070.401) (-1073.066) (-1120.830) [-1074.037] -- 0:01:21
882000 -- (-1071.557) (-1077.091) [-1067.574] (-1127.331) * [-1076.225] (-1089.310) (-1135.626) (-1068.051) -- 0:01:20
883000 -- (-1077.245) (-1097.885) [-1061.641] (-1119.782) * (-1070.921) (-1082.899) (-1128.270) [-1065.633] -- 0:01:19
884000 -- (-1085.615) (-1086.130) [-1067.775] (-1133.637) * (-1076.153) [-1071.735] (-1126.954) (-1074.062) -- 0:01:19
885000 -- (-1075.768) [-1088.329] (-1075.130) (-1131.241) * (-1074.047) [-1078.694] (-1125.037) (-1088.322) -- 0:01:18
Average standard deviation of split frequencies: 0.009843
886000 -- [-1075.213] (-1071.102) (-1071.551) (-1136.502) * (-1075.525) [-1072.991] (-1142.052) (-1082.644) -- 0:01:17
887000 -- (-1092.050) [-1073.536] (-1082.693) (-1136.981) * [-1070.405] (-1073.137) (-1132.924) (-1076.833) -- 0:01:17
888000 -- (-1090.084) [-1067.644] (-1075.235) (-1135.151) * (-1077.465) [-1069.094] (-1135.936) (-1085.959) -- 0:01:16
889000 -- (-1077.147) [-1073.863] (-1084.435) (-1142.006) * (-1074.430) [-1077.612] (-1140.490) (-1075.230) -- 0:01:15
890000 -- (-1081.886) [-1074.090] (-1081.851) (-1131.538) * [-1065.043] (-1073.412) (-1120.255) (-1075.131) -- 0:01:15
Average standard deviation of split frequencies: 0.010011
891000 -- (-1086.930) [-1077.246] (-1096.437) (-1138.691) * (-1075.854) [-1073.705] (-1125.913) (-1080.456) -- 0:01:14
892000 -- (-1069.292) [-1077.767] (-1092.930) (-1130.385) * (-1079.867) (-1077.913) (-1123.912) [-1088.238] -- 0:01:13
893000 -- (-1076.996) [-1071.722] (-1081.109) (-1120.798) * (-1088.324) (-1075.110) (-1133.254) [-1070.295] -- 0:01:13
894000 -- (-1077.152) (-1078.184) [-1065.649] (-1125.049) * (-1081.326) (-1075.652) (-1129.614) [-1074.999] -- 0:01:12
895000 -- (-1079.008) [-1068.315] (-1073.591) (-1126.859) * [-1077.221] (-1078.845) (-1114.409) (-1068.490) -- 0:01:11
Average standard deviation of split frequencies: 0.009951
896000 -- (-1090.635) [-1076.746] (-1071.119) (-1122.213) * (-1079.253) (-1071.350) (-1130.839) [-1067.048] -- 0:01:11
897000 -- [-1074.312] (-1073.499) (-1080.205) (-1127.261) * (-1073.508) [-1075.173] (-1127.122) (-1074.363) -- 0:01:10
898000 -- (-1071.523) [-1071.679] (-1074.359) (-1122.802) * (-1077.302) [-1069.071] (-1132.369) (-1079.906) -- 0:01:09
899000 -- [-1071.816] (-1088.228) (-1084.459) (-1126.852) * (-1091.672) [-1067.395] (-1132.617) (-1074.468) -- 0:01:09
900000 -- (-1069.683) (-1080.239) [-1072.542] (-1138.738) * (-1096.863) [-1062.353] (-1120.922) (-1081.867) -- 0:01:08
Average standard deviation of split frequencies: 0.009467
901000 -- (-1076.686) (-1084.096) [-1066.616] (-1131.230) * (-1081.795) [-1066.883] (-1123.628) (-1085.557) -- 0:01:07
902000 -- [-1069.986] (-1069.370) (-1080.680) (-1127.117) * (-1086.201) (-1067.770) (-1132.003) [-1069.093] -- 0:01:07
903000 -- (-1071.616) (-1088.665) [-1074.864] (-1129.673) * (-1082.330) (-1077.007) (-1124.103) [-1080.798] -- 0:01:06
904000 -- [-1071.150] (-1094.579) (-1079.388) (-1139.457) * (-1078.994) [-1076.826] (-1114.786) (-1074.737) -- 0:01:05
905000 -- (-1084.240) (-1097.475) [-1069.543] (-1132.922) * [-1070.905] (-1093.903) (-1116.054) (-1066.573) -- 0:01:05
Average standard deviation of split frequencies: 0.009121
906000 -- (-1080.669) (-1077.995) [-1069.019] (-1127.306) * (-1081.041) (-1084.832) (-1124.253) [-1075.658] -- 0:01:04
907000 -- (-1069.969) (-1082.034) [-1067.635] (-1132.163) * (-1082.394) [-1071.760] (-1127.143) (-1072.092) -- 0:01:03
908000 -- (-1088.784) (-1073.624) [-1071.146] (-1128.777) * (-1079.870) (-1076.467) (-1131.100) [-1069.097] -- 0:01:03
909000 -- (-1078.445) (-1076.683) [-1077.043] (-1136.552) * (-1081.246) [-1071.845] (-1123.058) (-1070.946) -- 0:01:02
910000 -- (-1069.410) (-1087.792) [-1074.251] (-1140.229) * (-1091.942) (-1073.476) (-1127.167) [-1083.634] -- 0:01:01
Average standard deviation of split frequencies: 0.009379
911000 -- [-1077.085] (-1083.555) (-1071.669) (-1122.209) * (-1096.823) (-1073.358) (-1132.146) [-1075.840] -- 0:01:01
912000 -- (-1094.052) [-1071.683] (-1065.309) (-1135.631) * (-1088.781) [-1079.592] (-1136.363) (-1079.531) -- 0:01:00
913000 -- (-1085.390) [-1061.986] (-1064.638) (-1125.236) * (-1069.315) (-1097.545) (-1144.413) [-1070.665] -- 0:00:59
914000 -- (-1081.869) (-1074.605) [-1066.987] (-1132.102) * [-1069.140] (-1088.045) (-1140.817) (-1080.918) -- 0:00:59
915000 -- (-1092.360) [-1071.600] (-1070.022) (-1122.718) * [-1081.477] (-1095.137) (-1123.526) (-1079.758) -- 0:00:58
Average standard deviation of split frequencies: 0.009521
916000 -- (-1084.733) [-1071.856] (-1080.822) (-1139.284) * [-1080.783] (-1092.351) (-1125.205) (-1070.296) -- 0:00:57
917000 -- [-1076.315] (-1076.740) (-1077.331) (-1126.244) * (-1086.505) (-1098.270) (-1136.572) [-1061.021] -- 0:00:57
918000 -- [-1073.159] (-1081.366) (-1076.170) (-1130.708) * (-1094.986) (-1081.034) (-1133.043) [-1075.099] -- 0:00:56
919000 -- (-1074.446) (-1097.029) [-1070.583] (-1130.905) * (-1091.452) (-1090.872) (-1132.318) [-1074.609] -- 0:00:55
920000 -- (-1084.290) (-1082.107) [-1081.811] (-1128.518) * (-1085.044) [-1077.044] (-1132.785) (-1071.251) -- 0:00:55
Average standard deviation of split frequencies: 0.009759
921000 -- (-1079.346) [-1066.801] (-1086.503) (-1128.326) * (-1085.308) (-1084.571) (-1135.424) [-1079.854] -- 0:00:54
922000 -- (-1068.815) [-1074.950] (-1087.673) (-1134.874) * (-1079.108) [-1072.772] (-1129.247) (-1068.749) -- 0:00:53
923000 -- [-1080.277] (-1084.327) (-1074.924) (-1134.565) * (-1087.300) [-1072.617] (-1138.944) (-1074.810) -- 0:00:53
924000 -- (-1071.367) (-1080.219) [-1069.018] (-1130.112) * (-1082.695) (-1069.996) (-1143.093) [-1067.842] -- 0:00:52
925000 -- (-1075.026) (-1067.322) [-1075.336] (-1125.030) * [-1070.507] (-1085.158) (-1133.746) (-1075.068) -- 0:00:51
Average standard deviation of split frequencies: 0.009777
926000 -- (-1075.394) (-1078.706) [-1073.862] (-1127.407) * (-1079.455) [-1075.554] (-1134.419) (-1071.617) -- 0:00:50
927000 -- [-1074.899] (-1081.179) (-1072.609) (-1133.433) * [-1072.724] (-1069.388) (-1132.917) (-1065.075) -- 0:00:50
928000 -- (-1079.618) (-1092.724) [-1067.344] (-1111.986) * (-1072.739) (-1079.727) (-1115.514) [-1070.997] -- 0:00:49
929000 -- (-1080.071) (-1077.063) [-1072.294] (-1119.121) * [-1076.572] (-1072.700) (-1131.499) (-1089.641) -- 0:00:48
930000 -- [-1077.257] (-1076.247) (-1072.866) (-1119.112) * (-1089.825) [-1075.444] (-1137.887) (-1076.268) -- 0:00:48
Average standard deviation of split frequencies: 0.010175
931000 -- [-1070.377] (-1073.783) (-1078.345) (-1141.027) * (-1069.764) [-1075.413] (-1124.492) (-1077.400) -- 0:00:47
932000 -- [-1070.318] (-1105.776) (-1073.703) (-1124.728) * [-1063.486] (-1080.766) (-1134.215) (-1074.827) -- 0:00:46
933000 -- (-1071.210) (-1096.221) [-1080.528] (-1120.118) * [-1074.534] (-1080.338) (-1128.795) (-1078.311) -- 0:00:46
934000 -- (-1077.599) (-1074.791) [-1079.842] (-1144.721) * [-1069.370] (-1090.745) (-1146.247) (-1077.487) -- 0:00:45
935000 -- [-1069.604] (-1116.547) (-1074.178) (-1135.176) * (-1074.124) (-1082.732) (-1136.446) [-1075.190] -- 0:00:44
Average standard deviation of split frequencies: 0.010799
936000 -- [-1074.181] (-1118.037) (-1078.427) (-1128.151) * (-1090.489) [-1070.665] (-1122.127) (-1071.520) -- 0:00:44
937000 -- [-1068.068] (-1116.728) (-1076.294) (-1127.455) * (-1092.639) (-1079.144) (-1142.455) [-1078.954] -- 0:00:43
938000 -- (-1078.488) (-1125.992) [-1083.878] (-1129.315) * (-1078.740) (-1076.124) (-1131.010) [-1075.615] -- 0:00:42
939000 -- (-1081.810) (-1121.018) [-1074.726] (-1133.622) * (-1080.156) [-1072.605] (-1124.294) (-1080.979) -- 0:00:42
940000 -- [-1080.918] (-1113.117) (-1078.496) (-1132.166) * [-1087.313] (-1089.156) (-1117.753) (-1092.639) -- 0:00:41
Average standard deviation of split frequencies: 0.010789
941000 -- (-1079.830) (-1132.410) [-1067.668] (-1122.862) * (-1082.644) (-1088.363) (-1136.471) [-1062.864] -- 0:00:40
942000 -- [-1072.717] (-1121.518) (-1079.594) (-1142.299) * (-1082.518) (-1084.729) (-1130.222) [-1067.468] -- 0:00:40
943000 -- (-1079.598) (-1111.394) [-1087.228] (-1137.193) * [-1072.384] (-1077.760) (-1140.310) (-1079.790) -- 0:00:39
944000 -- (-1072.740) (-1126.378) [-1078.234] (-1136.123) * [-1077.512] (-1067.805) (-1128.754) (-1071.735) -- 0:00:38
945000 -- [-1071.789] (-1117.734) (-1091.861) (-1127.963) * [-1074.152] (-1088.444) (-1139.909) (-1066.975) -- 0:00:38
Average standard deviation of split frequencies: 0.010553
946000 -- [-1073.044] (-1120.247) (-1074.199) (-1129.292) * [-1074.019] (-1093.065) (-1128.435) (-1082.194) -- 0:00:37
947000 -- (-1089.244) (-1112.073) [-1066.940] (-1128.552) * (-1075.547) (-1078.159) (-1124.830) [-1081.883] -- 0:00:36
948000 -- (-1090.934) (-1116.177) [-1071.007] (-1134.005) * [-1068.100] (-1080.345) (-1119.904) (-1082.105) -- 0:00:36
949000 -- [-1074.549] (-1108.333) (-1077.707) (-1119.113) * (-1068.910) (-1074.266) (-1121.158) [-1072.801] -- 0:00:35
950000 -- (-1076.121) (-1116.709) [-1072.876] (-1118.580) * (-1074.626) (-1083.289) (-1119.794) [-1067.890] -- 0:00:34
Average standard deviation of split frequencies: 0.010705
951000 -- (-1071.955) (-1120.282) [-1079.199] (-1108.374) * (-1081.722) (-1071.711) (-1129.017) [-1075.625] -- 0:00:34
952000 -- (-1067.387) (-1118.700) [-1065.214] (-1118.260) * [-1076.824] (-1077.560) (-1132.684) (-1067.394) -- 0:00:33
953000 -- [-1069.027] (-1133.763) (-1070.394) (-1124.070) * (-1098.732) (-1072.469) (-1132.803) [-1083.056] -- 0:00:32
954000 -- [-1074.336] (-1126.373) (-1080.925) (-1120.856) * (-1093.522) (-1070.436) (-1129.476) [-1068.042] -- 0:00:31
955000 -- (-1073.734) (-1131.097) [-1077.790] (-1121.266) * (-1080.069) (-1077.606) (-1125.618) [-1075.630] -- 0:00:31
Average standard deviation of split frequencies: 0.010051
956000 -- [-1073.328] (-1133.124) (-1081.851) (-1115.962) * (-1069.763) [-1079.619] (-1125.590) (-1072.532) -- 0:00:30
957000 -- [-1076.120] (-1109.772) (-1073.414) (-1107.896) * [-1070.273] (-1089.792) (-1124.620) (-1063.857) -- 0:00:29
958000 -- (-1080.840) (-1106.228) [-1072.039] (-1121.621) * [-1071.557] (-1081.196) (-1129.775) (-1087.641) -- 0:00:29
959000 -- [-1086.270] (-1117.864) (-1072.180) (-1110.338) * [-1067.383] (-1076.811) (-1122.778) (-1078.574) -- 0:00:28
960000 -- (-1080.079) (-1118.071) [-1076.372] (-1121.548) * [-1064.017] (-1076.585) (-1127.543) (-1082.140) -- 0:00:27
Average standard deviation of split frequencies: 0.009646
961000 -- (-1074.302) (-1116.357) [-1058.872] (-1109.257) * [-1080.038] (-1070.976) (-1132.707) (-1083.017) -- 0:00:27
962000 -- [-1073.261] (-1122.704) (-1071.975) (-1105.489) * (-1085.718) [-1071.310] (-1126.538) (-1079.278) -- 0:00:26
963000 -- [-1073.342] (-1114.022) (-1066.326) (-1119.009) * [-1078.138] (-1076.075) (-1128.981) (-1077.462) -- 0:00:25
964000 -- (-1080.484) (-1104.529) [-1074.358] (-1120.443) * (-1079.855) [-1067.524] (-1121.602) (-1077.460) -- 0:00:25
965000 -- [-1075.196] (-1111.836) (-1076.228) (-1125.045) * (-1087.359) (-1067.995) (-1126.780) [-1068.863] -- 0:00:24
Average standard deviation of split frequencies: 0.009648
966000 -- [-1065.270] (-1122.754) (-1077.663) (-1112.358) * [-1064.580] (-1070.719) (-1119.072) (-1070.979) -- 0:00:23
967000 -- (-1075.977) (-1115.188) [-1075.602] (-1114.720) * (-1083.820) (-1074.874) (-1126.980) [-1066.658] -- 0:00:22
968000 -- (-1074.521) (-1126.256) [-1070.981] (-1114.754) * (-1087.373) [-1066.025] (-1127.419) (-1065.195) -- 0:00:22
969000 -- (-1082.795) (-1110.078) [-1068.150] (-1111.507) * (-1074.164) (-1081.408) (-1122.022) [-1069.668] -- 0:00:21
970000 -- (-1072.301) (-1115.620) [-1074.221] (-1108.764) * (-1078.527) (-1074.186) (-1121.624) [-1081.526] -- 0:00:20
Average standard deviation of split frequencies: 0.009505
971000 -- [-1071.334] (-1106.622) (-1071.570) (-1112.012) * (-1076.510) (-1083.144) (-1133.009) [-1077.697] -- 0:00:20
972000 -- (-1067.452) (-1112.741) [-1070.289] (-1121.888) * [-1068.640] (-1075.177) (-1137.481) (-1082.065) -- 0:00:19
973000 -- [-1079.543] (-1108.472) (-1068.032) (-1121.471) * [-1084.615] (-1071.671) (-1121.228) (-1087.831) -- 0:00:18
974000 -- (-1078.867) (-1127.265) [-1067.426] (-1118.248) * [-1068.924] (-1075.840) (-1128.056) (-1082.044) -- 0:00:18
975000 -- (-1079.839) (-1116.950) [-1073.230] (-1122.359) * (-1080.727) [-1081.352] (-1132.333) (-1079.852) -- 0:00:17
Average standard deviation of split frequencies: 0.009412
976000 -- (-1082.122) (-1137.397) [-1075.683] (-1114.562) * [-1067.088] (-1077.510) (-1124.580) (-1087.208) -- 0:00:16
977000 -- (-1085.514) (-1116.938) [-1079.554] (-1129.555) * (-1082.249) [-1068.778] (-1135.471) (-1073.625) -- 0:00:16
978000 -- (-1074.075) (-1121.364) [-1075.694] (-1114.372) * (-1073.424) [-1071.076] (-1137.997) (-1085.339) -- 0:00:15
979000 -- (-1085.217) (-1113.967) [-1074.536] (-1114.735) * [-1076.008] (-1080.329) (-1126.099) (-1073.745) -- 0:00:14
980000 -- (-1066.962) (-1106.266) [-1066.443] (-1122.893) * (-1074.086) (-1073.764) (-1125.188) [-1074.712] -- 0:00:13
Average standard deviation of split frequencies: 0.009221
981000 -- (-1076.471) (-1119.996) [-1069.836] (-1114.654) * (-1079.494) [-1075.043] (-1134.304) (-1082.458) -- 0:00:13
982000 -- [-1073.250] (-1120.632) (-1073.491) (-1113.446) * (-1070.920) (-1091.984) (-1138.713) [-1072.682] -- 0:00:12
983000 -- (-1085.529) (-1121.958) [-1064.895] (-1116.456) * [-1065.524] (-1074.165) (-1132.002) (-1076.861) -- 0:00:11
984000 -- (-1080.181) (-1122.315) [-1080.886] (-1105.816) * (-1073.098) [-1070.405] (-1135.529) (-1079.985) -- 0:00:11
985000 -- [-1074.059] (-1114.916) (-1073.628) (-1115.182) * (-1083.065) [-1074.100] (-1145.075) (-1075.079) -- 0:00:10
Average standard deviation of split frequencies: 0.009210
986000 -- (-1083.763) (-1105.798) [-1079.218] (-1118.451) * (-1083.789) (-1074.019) (-1133.662) [-1072.778] -- 0:00:09
987000 -- (-1083.449) (-1115.214) [-1073.651] (-1118.604) * [-1069.961] (-1071.772) (-1129.203) (-1085.191) -- 0:00:09
988000 -- (-1072.878) (-1108.841) [-1071.535] (-1114.509) * [-1071.462] (-1075.799) (-1121.874) (-1075.172) -- 0:00:08
989000 -- (-1073.858) (-1109.654) [-1072.153] (-1119.563) * (-1079.005) [-1072.941] (-1126.218) (-1071.619) -- 0:00:07
990000 -- (-1079.385) (-1125.904) [-1077.562] (-1118.454) * (-1092.641) (-1078.473) (-1127.968) [-1066.826] -- 0:00:06
Average standard deviation of split frequencies: 0.008565
991000 -- [-1077.370] (-1130.042) (-1073.570) (-1122.939) * (-1089.901) [-1060.600] (-1127.681) (-1066.466) -- 0:00:06
992000 -- (-1078.960) (-1109.867) [-1065.159] (-1121.459) * (-1104.650) (-1058.081) (-1126.820) [-1067.984] -- 0:00:05
993000 -- [-1071.814] (-1111.562) (-1075.418) (-1114.558) * (-1075.840) [-1089.081] (-1133.094) (-1079.817) -- 0:00:04
994000 -- (-1076.193) (-1116.947) [-1075.053] (-1111.660) * [-1068.888] (-1084.320) (-1134.459) (-1070.861) -- 0:00:04
995000 -- (-1075.092) (-1119.524) [-1074.786] (-1125.389) * (-1078.366) (-1081.700) (-1128.998) [-1069.298] -- 0:00:03
Average standard deviation of split frequencies: 0.007489
996000 -- [-1071.367] (-1109.658) (-1071.425) (-1112.185) * (-1071.204) [-1072.746] (-1137.625) (-1069.731) -- 0:00:02
997000 -- [-1073.354] (-1106.793) (-1065.386) (-1123.600) * [-1076.101] (-1086.054) (-1129.401) (-1078.736) -- 0:00:02
998000 -- [-1061.303] (-1114.721) (-1062.624) (-1116.487) * [-1072.974] (-1094.699) (-1130.586) (-1073.072) -- 0:00:01
999000 -- [-1067.489] (-1110.682) (-1067.814) (-1114.117) * (-1070.172) (-1077.877) (-1122.281) [-1081.070] -- 0:00:00
1000000 -- (-1067.513) (-1101.748) [-1067.623] (-1111.462) * (-1090.068) (-1077.890) (-1131.076) [-1072.264] -- 0:00:00
Average standard deviation of split frequencies: 0.007468
Analysis completed in 11 mins 33 seconds
Analysis used 692.03 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -1056.46
Likelihood of best state for "cold" chain of run 2 was -1057.00
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
64.3 % ( 55 %) Dirichlet(Revmat{all})
80.0 % ( 78 %) Slider(Revmat{all})
29.0 % ( 28 %) Dirichlet(Pi{all})
32.2 % ( 29 %) Slider(Pi{all})
81.2 % ( 66 %) Multiplier(Alpha{1,2})
68.0 % ( 46 %) Multiplier(Alpha{3})
81.7 % ( 52 %) Slider(Pinvar{all})
69.0 % ( 73 %) ExtSPR(Tau{all},V{all})
61.9 % ( 56 %) ExtTBR(Tau{all},V{all})
73.1 % ( 79 %) NNI(Tau{all},V{all})
47.4 % ( 48 %) ParsSPR(Tau{all},V{all})
27.4 % ( 38 %) Multiplier(V{all})
81.8 % ( 79 %) Nodeslider(V{all})
27.0 % ( 21 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
65.1 % ( 61 %) Dirichlet(Revmat{all})
81.2 % ( 73 %) Slider(Revmat{all})
29.4 % ( 24 %) Dirichlet(Pi{all})
31.5 % ( 30 %) Slider(Pi{all})
80.8 % ( 70 %) Multiplier(Alpha{1,2})
68.5 % ( 42 %) Multiplier(Alpha{3})
81.7 % ( 72 %) Slider(Pinvar{all})
68.8 % ( 77 %) ExtSPR(Tau{all},V{all})
61.5 % ( 61 %) ExtTBR(Tau{all},V{all})
72.9 % ( 79 %) NNI(Tau{all},V{all})
47.3 % ( 40 %) ParsSPR(Tau{all},V{all})
27.6 % ( 27 %) Multiplier(V{all})
81.6 % ( 91 %) Nodeslider(V{all})
26.7 % ( 24 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.30 0.04 0.00
2 | 167192 0.29 0.00
3 | 166584 166583 0.02
4 | 166317 166721 166603
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.30 0.04 0.00
2 | 166966 0.30 0.00
3 | 166560 166147 0.02
4 | 166725 166926 166676
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -1070.30
| 1 1 1 1 1 1|
| 1 2 2 2 1 2 |
| 2 2 2 1 2 |
| * 12 2 2 2 1 2|
| 1 21 1 1 2 2 2 2 2 |
| 2 2 2 21 2 2 21 |
|* 1 2 11 2 2 2*2 1 1 1 2 |
| 2 2 1 1 1 11 2 1 2 2 1 |
| 2 1 2 1 1 **1 11* |
| 2 2 22 1 1 2 2 1*1 1 |
| 1 1 1 21 1 2 2 1 |
| 1 22 1 1 2 |
| 2 |
| 1 1 2 |
| 1 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -1075.98
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1064.26 -1085.58
2 -1064.36 -1090.98
--------------------------------------
TOTAL -1064.31 -1090.29
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.072887 0.000329 0.040798 0.110183 0.070536 496.99 530.31 1.000
r(A<->C){all} 0.078614 0.002447 0.000420 0.170553 0.068966 405.24 447.82 1.000
r(A<->G){all} 0.294008 0.006398 0.143120 0.447223 0.288558 198.86 278.94 1.001
r(A<->T){all} 0.061560 0.001285 0.002315 0.128759 0.055260 439.95 496.24 1.000
r(C<->G){all} 0.031229 0.001060 0.000009 0.096940 0.020939 253.56 374.26 1.000
r(C<->T){all} 0.450955 0.009008 0.264936 0.632598 0.450710 161.48 225.98 1.001
r(G<->T){all} 0.083635 0.001758 0.012599 0.167170 0.077388 444.02 465.53 1.000
pi(A){all} 0.257165 0.000310 0.224280 0.292876 0.257084 988.76 1030.35 1.001
pi(C){all} 0.194856 0.000265 0.164043 0.228545 0.194429 1058.72 1059.62 1.000
pi(G){all} 0.252688 0.000298 0.221690 0.288377 0.252725 998.37 1021.43 1.000
pi(T){all} 0.295291 0.000335 0.261460 0.333925 0.295063 983.17 1014.67 1.001
alpha{1,2} 0.331421 0.314820 0.000284 1.384802 0.134910 690.61 737.74 1.000
alpha{3} 1.822717 1.631630 0.000011 4.367303 1.567319 776.62 788.60 1.000
pinvar{all} 0.537554 0.043864 0.094857 0.829878 0.591141 216.58 255.80 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C65
2 -- C598
3 -- C287
4 -- C195
5 -- C71
6 -- C589
7 -- C207
8 -- C565
9 -- C224
10 -- C81
11 -- C543
12 -- C223
13 -- C60
14 -- C303
15 -- C619
16 -- C624
17 -- C369
18 -- C283
19 -- C117
20 -- C380
21 -- C27
22 -- C141
23 -- C129
24 -- C291
25 -- C483
26 -- C377
27 -- C583
28 -- C559
29 -- C407
30 -- C595
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
------------------------------------
1 -- .*****************************
2 -- .*............................
3 -- ..*...........................
4 -- ...*..........................
5 -- ....*.........................
6 -- .....*........................
7 -- ......*.......................
8 -- .......*......................
9 -- ........*.....................
10 -- .........*....................
11 -- ..........*...................
12 -- ...........*..................
13 -- ............*.................
14 -- .............*................
15 -- ..............*...............
16 -- ...............*..............
17 -- ................*.............
18 -- .................*............
19 -- ..................*...........
20 -- ...................*..........
21 -- ....................*.........
22 -- .....................*........
23 -- ......................*.......
24 -- .......................*......
25 -- ........................*.....
26 -- .........................*....
27 -- ..........................*...
28 -- ...........................*..
29 -- ............................*.
30 -- .............................*
31 -- .***.*******.****.***..*******
32 -- .***.*************************
33 -- .***.*******.****.*.*..*******
34 -- .***.************.***..*******
35 -- .***.*.*****.****.*.*..*******
36 -- .........*...*..*...*....*....
37 -- .**..*.*****.****.*.*..*******
38 -- .**..*.**.**..**.......**.****
39 -- .***.*.**.**..**.......**.****
40 -- .**..*.**.**..**..*....**.****
41 -- .........*...*..*.*.*....*....
42 -- .**..*.*****.****.*....*******
43 -- .***.************.************
44 -- .................*....*.......
45 -- .***.*****************.*******
46 -- .................*...*........
47 -- .....................**.......
48 -- .***.****************.********
49 -- .***.************.****.*******
50 -- .***.************.***.********
51 -- .***.****************..*******
52 -- .................*...**.......
53 -- .........*...*..*........*....
54 -- .........*......*.............
55 -- .........*...............*....
56 -- .........*...*................
57 -- .............*...........*....
58 -- .............*..*.............
59 -- ................*........*....
60 -- .***.*.**.**..**..*....**.****
61 -- .***.*.*****.****...*..*******
62 -- .............*......*.........
63 -- .........*...*..*...*.........
64 -- .........*......*........*....
------------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
31 2994 0.997335 0.000000 0.997335 0.997335 2
32 2963 0.987009 0.004240 0.984011 0.990007 2
33 2761 0.919720 0.000471 0.919387 0.920053 2
34 2562 0.853431 0.006595 0.848767 0.858095 2
35 2500 0.832778 0.009422 0.826116 0.839440 2
36 1813 0.603931 0.008009 0.598268 0.609594 2
37 1763 0.587275 0.012719 0.578281 0.596269 2
38 1412 0.470353 0.009422 0.463691 0.477015 2
39 985 0.328115 0.005182 0.324450 0.331779 2
40 931 0.310127 0.011777 0.301799 0.318454 2
41 910 0.303131 0.004711 0.299800 0.306462 2
42 689 0.229514 0.013662 0.219853 0.239174 2
43 597 0.198867 0.006124 0.194537 0.203198 2
44 591 0.196869 0.010835 0.189207 0.204530 2
45 583 0.194204 0.004240 0.191206 0.197202 2
46 576 0.191872 0.014133 0.181879 0.201865 2
47 571 0.190207 0.008951 0.183877 0.196536 2
48 568 0.189207 0.000942 0.188541 0.189873 2
49 567 0.188874 0.002355 0.187209 0.190540 2
50 558 0.185876 0.004711 0.182545 0.189207 2
51 527 0.175550 0.001413 0.174550 0.176549 2
52 497 0.165556 0.008951 0.159227 0.171885 2
53 495 0.164890 0.004240 0.161892 0.167888 2
54 475 0.158228 0.000471 0.157895 0.158561 2
55 445 0.148235 0.008009 0.142572 0.153897 2
56 420 0.139907 0.001884 0.138574 0.141239 2
57 404 0.134577 0.008480 0.128581 0.140573 2
58 404 0.134577 0.022612 0.118588 0.150566 2
59 394 0.131246 0.015075 0.120586 0.141905 2
60 393 0.130913 0.007066 0.125916 0.135909 2
61 346 0.115256 0.006595 0.110593 0.119920 2
62 316 0.105263 0.003769 0.102598 0.107928 2
63 287 0.095603 0.008951 0.089274 0.101932 2
64 266 0.088608 0.017901 0.075949 0.101266 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.000792 0.000001 0.000000 0.002506 0.000525 1.001 2
length{all}[2] 0.000800 0.000001 0.000000 0.002402 0.000516 1.000 2
length{all}[3] 0.000777 0.000001 0.000000 0.002437 0.000506 1.000 2
length{all}[4] 0.005647 0.000007 0.001369 0.011001 0.005160 1.000 2
length{all}[5] 0.000796 0.000001 0.000001 0.002408 0.000547 1.000 2
length{all}[6] 0.000793 0.000001 0.000000 0.002499 0.000540 1.000 2
length{all}[7] 0.003223 0.000003 0.000493 0.006885 0.002858 1.000 2
length{all}[8] 0.000776 0.000001 0.000000 0.002343 0.000534 1.000 2
length{all}[9] 0.000787 0.000001 0.000000 0.002449 0.000519 1.000 2
length{all}[10] 0.000766 0.000001 0.000000 0.002397 0.000521 1.000 2
length{all}[11] 0.000813 0.000001 0.000000 0.002340 0.000567 1.000 2
length{all}[12] 0.000804 0.000001 0.000000 0.002493 0.000543 1.001 2
length{all}[13] 0.003303 0.000003 0.000552 0.007020 0.002949 1.001 2
length{all}[14] 0.000810 0.000001 0.000000 0.002420 0.000555 1.000 2
length{all}[15] 0.000772 0.000001 0.000000 0.002402 0.000508 1.000 2
length{all}[16] 0.001588 0.000001 0.000028 0.003855 0.001320 1.001 2
length{all}[17] 0.000786 0.000001 0.000000 0.002418 0.000543 1.000 2
length{all}[18] 0.000790 0.000001 0.000001 0.002472 0.000535 1.000 2
length{all}[19] 0.000866 0.000001 0.000000 0.002765 0.000569 1.000 2
length{all}[20] 0.004026 0.000004 0.000890 0.008198 0.003622 1.000 2
length{all}[21] 0.003036 0.000003 0.000405 0.006798 0.002680 1.000 2
length{all}[22] 0.002414 0.000002 0.000207 0.005349 0.002061 1.002 2
length{all}[23] 0.000778 0.000001 0.000000 0.002403 0.000523 1.001 2
length{all}[24] 0.000795 0.000001 0.000000 0.002541 0.000539 1.000 2
length{all}[25] 0.001591 0.000001 0.000058 0.003999 0.001276 1.000 2
length{all}[26] 0.002410 0.000002 0.000225 0.005304 0.002081 1.000 2
length{all}[27] 0.000779 0.000001 0.000000 0.002405 0.000524 1.000 2
length{all}[28] 0.000781 0.000001 0.000000 0.002540 0.000507 1.000 2
length{all}[29] 0.000821 0.000001 0.000000 0.002533 0.000569 1.001 2
length{all}[30] 0.000764 0.000001 0.000000 0.002334 0.000495 1.000 2
length{all}[31] 0.002611 0.000003 0.000185 0.005924 0.002214 1.001 2
length{all}[32] 0.001564 0.000001 0.000015 0.003808 0.001286 1.000 2
length{all}[33] 0.001656 0.000002 0.000004 0.004027 0.001354 1.000 2
length{all}[34] 0.001567 0.000001 0.000013 0.003906 0.001267 1.000 2
length{all}[35] 0.002012 0.000002 0.000003 0.005165 0.001629 1.000 2
length{all}[36] 0.001584 0.000001 0.000024 0.003951 0.001291 1.000 2
length{all}[37] 0.002034 0.000002 0.000027 0.004935 0.001674 1.001 2
length{all}[38] 0.001554 0.000002 0.000018 0.003844 0.001240 0.999 2
length{all}[39] 0.001564 0.000002 0.000010 0.003943 0.001246 0.999 2
length{all}[40] 0.001384 0.000001 0.000012 0.003773 0.001084 1.000 2
length{all}[41] 0.001329 0.000001 0.000006 0.003792 0.000968 1.002 2
length{all}[42] 0.001563 0.000001 0.000012 0.003717 0.001285 1.001 2
length{all}[43] 0.000832 0.000001 0.000004 0.002606 0.000597 0.998 2
length{all}[44] 0.000800 0.000001 0.000001 0.002412 0.000515 0.998 2
length{all}[45] 0.000759 0.000001 0.000004 0.002423 0.000488 0.999 2
length{all}[46] 0.000818 0.000001 0.000000 0.002514 0.000526 1.000 2
length{all}[47] 0.000773 0.000001 0.000000 0.002368 0.000524 1.003 2
length{all}[48] 0.000817 0.000001 0.000001 0.002413 0.000560 1.002 2
length{all}[49] 0.000786 0.000001 0.000001 0.002407 0.000536 0.998 2
length{all}[50] 0.000811 0.000001 0.000003 0.002369 0.000553 0.998 2
length{all}[51] 0.000829 0.000001 0.000002 0.002589 0.000499 0.998 2
length{all}[52] 0.000805 0.000001 0.000002 0.002598 0.000496 0.999 2
length{all}[53] 0.001063 0.000001 0.000001 0.003196 0.000757 0.999 2
length{all}[54] 0.000754 0.000001 0.000002 0.002201 0.000540 0.998 2
length{all}[55] 0.000763 0.000001 0.000000 0.002364 0.000482 0.999 2
length{all}[56] 0.000769 0.000001 0.000001 0.002290 0.000530 0.998 2
length{all}[57] 0.000891 0.000001 0.000000 0.002820 0.000570 0.998 2
length{all}[58] 0.000819 0.000001 0.000003 0.002504 0.000551 1.001 2
length{all}[59] 0.000788 0.000001 0.000001 0.002259 0.000562 1.000 2
length{all}[60] 0.001085 0.000001 0.000003 0.003379 0.000765 0.999 2
length{all}[61] 0.000948 0.000001 0.000004 0.002661 0.000669 1.006 2
length{all}[62] 0.000793 0.000001 0.000000 0.002203 0.000514 0.997 2
length{all}[63] 0.000954 0.000001 0.000003 0.002936 0.000696 0.998 2
length{all}[64] 0.000769 0.000001 0.000007 0.002179 0.000540 1.000 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.007468
Maximum standard deviation of split frequencies = 0.022612
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.006
Clade credibility values:
/--------------------------------------------------------------------- C65 (1)
|
|--------------------------------------------------------------------- C71 (5)
|
| /----------------- C598 (2)
| |
| |----------------- C287 (3)
| |
| |----------------- C589 (6)
| |
| |----------------- C565 (8)
| |
| |----------------- C224 (9)
| |
| | /--------- C81 (10)
| | |
| | |--------- C303 (14)
| | |
| |---60--+--------- C369 (17)
| | |
| | |--------- C27 (21)
| | |
| | \--------- C377 (26)
| |
| /---59---+----------------- C543 (11)
| | |
| | |----------------- C223 (12)
+ | |
| | |----------------- C619 (15)
| | |
| | |----------------- C624 (16)
| | |
| | |----------------- C117 (19)
| | |
| | |----------------- C291 (24)
| /---83--+ |
| | | |----------------- C483 (25)
| | | |
| | | |----------------- C583 (27)
| | | |
| | | |----------------- C559 (28)
| | | |
| /---92---+ | |----------------- C407 (29)
| | | | |
| | | | \----------------- C595 (30)
| | | |
| /---100--+ | \-------------------------- C195 (4)
| | | |
| | | \---------------------------------- C207 (7)
| /---85--+ |
| | | \------------------------------------------- C380 (20)
| | |
| | \---------------------------------------------------- C60 (13)
| |
\---99---+------------------------------------------------------------ C283 (18)
|
|------------------------------------------------------------ C141 (22)
|
\------------------------------------------------------------ C129 (23)
Phylogram (based on average branch lengths):
/--- C65 (1)
|
|--- C71 (5)
|
| /--- C598 (2)
| |
| |--- C287 (3)
| |
| |--- C589 (6)
| |
| |--- C565 (8)
| |
| |--- C224 (9)
| |
| | /--- C81 (10)
| | |
| | |--- C303 (14)
| | |
| |------+--- C369 (17)
| | |
| | |-------------- C27 (21)
| | |
| | \----------- C377 (26)
| |
| /-------+--- C543 (11)
| | |
| | |--- C223 (12)
+ | |
| | |--- C619 (15)
| | |
| | |------- C624 (16)
| | |
| | |--- C117 (19)
| | |
| | |--- C291 (24)
| /--------+ |
| | | |------- C483 (25)
| | | |
| | | |--- C583 (27)
| | | |
| | | |--- C559 (28)
| | | |
| /------+ | |--- C407 (29)
| | | | |
| | | | \--- C595 (30)
| | | |
| /-----------+ | \-------------------------- C195 (4)
| | | |
| | | \--------------- C207 (7)
| /-----+ |
| | | \------------------- C380 (20)
| | |
| | \---------------- C60 (13)
| |
\------+--- C283 (18)
|
|---------- C141 (22)
|
\-- C129 (23)
|---------| 0.002 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3002 trees sampled):
50 % credible set contains 1501 trees
90 % credible set contains 2702 trees
95 % credible set contains 2852 trees
99 % credible set contains 2972 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Thu Nov 17 16:37:28 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/LZW_nsp5_VIPR_ALG4_672096717_11279_11863_1_2012_02_China_Unknown_PEDV.result--
-- Starting log on Fri Nov 18 07:48:35 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/LZW_nsp5_VIPR_ALG4_672096717_11279_11863_1_2012_02_China_Unknown_PEDV.result/original_alignment/codeml,LZW_nsp5_VIPR_ALG4_672096717_11279_11863_1_2012_02_China_Unknown_PEDV.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C303 585 sites
reading seq# 2 C624 585 sites
reading seq# 3 C619 585 sites
reading seq# 4 C543 585 sites
reading seq# 5 C283 585 sites
reading seq# 6 C369 585 sites
reading seq# 7 C117 585 sites
reading seq# 8 C60 585 sites
reading seq# 9 C559 585 sites
reading seq#10 C380 585 sites
reading seq#11 C598 585 sites
reading seq#12 C65 585 sites
reading seq#13 C287 585 sites
reading seq#14 C27 585 sites
reading seq#15 C141 585 sites
reading seq#16 C71 585 sites
reading seq#17 C195 585 sites
reading seq#18 C589 585 sites
reading seq#19 C291 585 sites
reading seq#20 C129 585 sites
reading seq#21 C565 585 sites
reading seq#22 C207 585 sites
reading seq#23 C377 585 sites
reading seq#24 C583 585 sites
reading seq#25 C483 585 sites
reading seq#26 C81 585 sites
reading seq#27 C224 585 sites
reading seq#28 C595 585 sites
reading seq#29 C407 585 sites
reading seq#30 C223 585 sitesns = 30 ls = 585
Reading sequences, sequential format..
Reading seq # 1: C303
Reading seq # 2: C624
Reading seq # 3: C619
Reading seq # 4: C543
Reading seq # 5: C283
Reading seq # 6: C369
Reading seq # 7: C117
Reading seq # 8: C60
Reading seq # 9: C559
Reading seq #10: C380
Reading seq #11: C598
Reading seq #12: C65
Reading seq #13: C287
Reading seq #14: C27
Reading seq #15: C141
Reading seq #16: C71
Reading seq #17: C195
Reading seq #18: C589
Reading seq #19: C291
Reading seq #20: C129
Reading seq #21: C565
Reading seq #22: C207
Reading seq #23: C377
Reading seq #24: C583
Reading seq #25: C483
Reading seq #26: C81
Reading seq #27: C224
Reading seq #28: C595
Reading seq #29: C407
Reading seq #30: C223
Sequences read..
Counting site patterns.. 0:00
Compressing, 76 patterns at 195 / 195 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 76 patterns at 195 / 195 sites (100.0%), 0:00
Counting codons..
3480 bytes for distance
74176 bytes for conP
6688 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(12, 16, ((((((11, 13, 18, 21, 27, (26, 1, 6, 14, 23), 4, 30, 3, 2, 7, 19, 25, 24, 9, 29, 28), 17), 22), 10), 8), 5, 15, 20)); MP score: 35
296704 bytes for conP, adjusted
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
37
0.107693 0.062892 0.014979 0.096501 0.061071 0.059701 0.083873 0.015235 0.080456 0.059322 0.046607 0.098263 0.073380 0.089502 0.051166 0.079108 0.032018 0.102708 0.063037 0.104303 0.096054 0.060888 0.020600 0.024159 0.026763 0.097479 0.100965 0.100620 0.059526 0.030092 0.050951 0.043148 0.076943 0.072326 0.012879 0.058563 0.019736 0.300000 0.732541 0.299450
ntime & nrate & np: 37 2 40
Bounds (np=40):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 13.209286
np = 40
lnL0 = -1334.970365
Iterating by ming2
Initial: fx= 1334.970365
x= 0.10769 0.06289 0.01498 0.09650 0.06107 0.05970 0.08387 0.01523 0.08046 0.05932 0.04661 0.09826 0.07338 0.08950 0.05117 0.07911 0.03202 0.10271 0.06304 0.10430 0.09605 0.06089 0.02060 0.02416 0.02676 0.09748 0.10097 0.10062 0.05953 0.03009 0.05095 0.04315 0.07694 0.07233 0.01288 0.05856 0.01974 0.30000 0.73254 0.29945
1 h-m-p 0.0000 0.0001 836.3813 ++ 1275.434534 m 0.0001 45 | 1/40
2 h-m-p 0.0000 0.0000 3273.5538 ++ 1250.282356 m 0.0000 88 | 2/40
3 h-m-p 0.0000 0.0000 14535.0496 ++ 1225.967326 m 0.0000 131 | 3/40
4 h-m-p 0.0000 0.0000 3557.0296 ++ 1214.949048 m 0.0000 174 | 4/40
5 h-m-p 0.0000 0.0000 849.1482 ++ 1209.155795 m 0.0000 217 | 5/40
6 h-m-p 0.0000 0.0000 3383.4455 ++ 1172.127909 m 0.0000 260 | 6/40
7 h-m-p 0.0000 0.0000 1856.5688 ++ 1159.708738 m 0.0000 303 | 7/40
8 h-m-p 0.0000 0.0001 604.7320 ++ 1142.564411 m 0.0001 346 | 8/40
9 h-m-p 0.0000 0.0000 12041.6357 ++ 1142.155636 m 0.0000 389 | 9/40
10 h-m-p 0.0000 0.0000 28418.7438 ++ 1139.610015 m 0.0000 432 | 10/40
11 h-m-p 0.0000 0.0000 1162.1365 ++ 1133.931563 m 0.0000 475 | 11/40
12 h-m-p 0.0000 0.0000 4256.5434 ++ 1120.538795 m 0.0000 518 | 12/40
13 h-m-p 0.0000 0.0000 515148.3878 ++ 1111.021736 m 0.0000 561 | 13/40
14 h-m-p 0.0000 0.0000 3244.8758 ++ 1111.006513 m 0.0000 604 | 14/40
15 h-m-p 0.0000 0.0000 13559.3716 ++ 1095.341606 m 0.0000 647 | 15/40
16 h-m-p 0.0000 0.0000 3897.6468 ++ 1093.383489 m 0.0000 690 | 16/40
17 h-m-p 0.0000 0.0000 3314.3025 ++ 1091.724103 m 0.0000 733 | 17/40
18 h-m-p 0.0000 0.0000 1582.2821 ++ 1091.509752 m 0.0000 776 | 18/40
19 h-m-p 0.0000 0.0000 1594.3870 ++ 1089.736054 m 0.0000 819 | 19/40
20 h-m-p 0.0000 0.0000 881.5847 ++ 1086.665394 m 0.0000 862 | 20/40
21 h-m-p 0.0000 0.0002 390.9488 ++ 1060.590401 m 0.0002 905 | 20/40
22 h-m-p 0.0000 0.0000 993.8384 +YYCCCC 1058.736937 5 0.0000 957 | 20/40
23 h-m-p 0.0000 0.0000 1847.8828 +YYYYCYCCC 1054.246622 8 0.0000 1012 | 20/40
24 h-m-p 0.0000 0.0000 627.0225 +YYYYCC 1051.525403 5 0.0000 1062 | 20/40
25 h-m-p 0.0000 0.0001 407.0503 +YCYCCC 1048.345554 5 0.0001 1114 | 20/40
26 h-m-p 0.0000 0.0002 122.3600 +YCYCCC 1046.100631 5 0.0001 1166 | 20/40
27 h-m-p 0.0002 0.0008 60.9618 CCCC 1045.378899 3 0.0003 1215 | 20/40
28 h-m-p 0.0001 0.0006 59.4242 YCYCCC 1044.609773 5 0.0003 1266 | 20/40
29 h-m-p 0.0002 0.0023 86.6027 +CYCCC 1040.216803 4 0.0015 1318 | 20/40
30 h-m-p 0.0001 0.0006 281.9835 YCYCCC 1037.127164 5 0.0003 1369 | 20/40
31 h-m-p 0.0002 0.0008 92.3156 +YYCCCC 1035.725353 5 0.0005 1421 | 20/40
32 h-m-p 0.0004 0.0020 49.0028 CCCC 1034.960201 3 0.0007 1470 | 20/40
33 h-m-p 0.0011 0.0225 29.7622 +YCCC 1028.911717 3 0.0089 1519 | 20/40
34 h-m-p 0.0014 0.0070 12.0083 +YYYCCC 1025.478366 5 0.0050 1570 | 20/40
35 h-m-p 0.0117 0.0583 1.2281 +YYYCCC 1019.852949 5 0.0429 1621 | 20/40
36 h-m-p 0.0010 0.0050 9.3285 ++ 1015.209946 m 0.0050 1664 | 21/40
37 h-m-p 0.0146 0.0730 1.1592 +YYYYYYC 1011.869290 6 0.0579 1714 | 21/40
38 h-m-p 0.0175 0.0875 1.0264 +YCYCCC 1010.933658 5 0.0515 1766 | 21/40
39 h-m-p 0.0435 0.3706 1.2147 YCCC 1010.041175 3 0.0903 1814 | 21/40
40 h-m-p 0.1401 0.7006 0.6529 CCCC 1008.961949 3 0.1891 1863 | 21/40
41 h-m-p 0.2112 1.0561 0.5050 YCCC 1005.590677 3 0.4277 1930 | 21/40
42 h-m-p 0.2558 1.2789 0.3152 +YCYCCC 1003.494355 5 0.7759 2001 | 21/40
43 h-m-p 0.1184 0.5922 0.6252 YCCCC 1002.269146 4 0.3116 2070 | 21/40
44 h-m-p 0.1204 0.6021 0.4619 +YCCCC 1001.357454 4 0.3323 2140 | 21/40
45 h-m-p 0.9484 5.6282 0.1618 CYC 1000.869351 2 1.1259 2205 | 21/40
46 h-m-p 0.6967 4.4139 0.2615 YC 1000.162855 1 1.7410 2268 | 21/40
47 h-m-p 1.2336 6.1682 0.1101 CCCC 999.939334 3 2.0594 2336 | 21/40
48 h-m-p 1.0760 8.0000 0.2107 CYCC 999.647359 3 1.5424 2403 | 21/40
49 h-m-p 1.6000 8.0000 0.1073 CCCC 999.424596 3 2.4601 2471 | 21/40
50 h-m-p 1.6000 8.0000 0.0073 YCCC 999.258578 3 3.6086 2538 | 21/40
51 h-m-p 0.8220 8.0000 0.0322 +YCC 999.161984 2 2.5755 2604 | 21/40
52 h-m-p 1.6000 8.0000 0.0263 CCC 999.106513 2 2.2139 2670 | 21/40
53 h-m-p 1.6000 8.0000 0.0284 YC 999.066715 1 3.1224 2733 | 21/40
54 h-m-p 1.6000 8.0000 0.0181 YC 999.033955 1 2.6417 2796 | 21/40
55 h-m-p 1.6000 8.0000 0.0039 +YC 998.973397 1 4.9898 2860 | 21/40
56 h-m-p 0.3496 8.0000 0.0558 +CCC 998.946545 2 1.9430 2927 | 21/40
57 h-m-p 1.5105 8.0000 0.0718 YC 998.922716 1 2.8695 2990 | 21/40
58 h-m-p 1.6000 8.0000 0.0422 YC 998.903652 1 2.5778 3053 | 21/40
59 h-m-p 1.6000 8.0000 0.0007 YC 998.883729 1 3.4110 3116 | 21/40
60 h-m-p 0.2208 8.0000 0.0103 +YC 998.876869 1 1.8542 3180 | 21/40
61 h-m-p 1.6000 8.0000 0.0031 +YC 998.867349 1 4.7744 3244 | 21/40
62 h-m-p 0.4066 8.0000 0.0359 +CC 998.862813 1 1.9088 3309 | 21/40
63 h-m-p 1.6000 8.0000 0.0045 +YC 998.859725 1 4.9484 3373 | 21/40
64 h-m-p 1.3535 8.0000 0.0164 CC 998.857180 1 2.1248 3437 | 21/40
65 h-m-p 1.6000 8.0000 0.0025 CC 998.856772 1 2.2881 3501 | 21/40
66 h-m-p 1.6000 8.0000 0.0016 YC 998.856457 1 2.6489 3564 | 21/40
67 h-m-p 1.6000 8.0000 0.0010 C 998.856422 0 2.4860 3626 | 21/40
68 h-m-p 1.6000 8.0000 0.0004 ++ 998.856322 m 8.0000 3688 | 21/40
69 h-m-p 1.2641 8.0000 0.0022 YC 998.856210 1 2.6968 3751 | 21/40
70 h-m-p 1.6000 8.0000 0.0012 +C 998.856144 0 6.4186 3814 | 21/40
71 h-m-p 1.6000 8.0000 0.0018 ++ 998.855789 m 8.0000 3876 | 21/40
72 h-m-p 1.6000 8.0000 0.0048 Y 998.855769 0 1.0515 3938 | 21/40
73 h-m-p 1.6000 8.0000 0.0003 Y 998.855769 0 0.9430 4000 | 21/40
74 h-m-p 1.6000 8.0000 0.0000 C 998.855769 0 0.5640 4062 | 21/40
75 h-m-p 1.3098 8.0000 0.0000 ---Y 998.855769 0 0.0051 4127
Out..
lnL = -998.855769
4128 lfun, 12384 eigenQcodon, 305472 P(t)
end of tree file.
Time used: 1:59
Model 2: PositiveSelection
TREE # 1
(12, 16, ((((((11, 13, 18, 21, 27, (26, 1, 6, 14, 23), 4, 30, 3, 2, 7, 19, 25, 24, 9, 29, 28), 17), 22), 10), 8), 5, 15, 20)); MP score: 35
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
37
0.075803 0.027642 0.047194 0.050452 0.081503 0.077465 0.074696 0.066757 0.077372 0.060488 0.044023 0.016695 0.045268 0.016424 0.035724 0.054084 0.080932 0.016107 0.041241 0.086855 0.032318 0.060088 0.024813 0.097869 0.053437 0.035344 0.072007 0.098062 0.059678 0.047281 0.048310 0.016598 0.045527 0.019213 0.066203 0.107727 0.100620 4.107457 0.965143 0.220946 0.176082 1.365217
ntime & nrate & np: 37 3 42
Bounds (np=42):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 3.947102
np = 42
lnL0 = -1247.591332
Iterating by ming2
Initial: fx= 1247.591332
x= 0.07580 0.02764 0.04719 0.05045 0.08150 0.07747 0.07470 0.06676 0.07737 0.06049 0.04402 0.01670 0.04527 0.01642 0.03572 0.05408 0.08093 0.01611 0.04124 0.08686 0.03232 0.06009 0.02481 0.09787 0.05344 0.03534 0.07201 0.09806 0.05968 0.04728 0.04831 0.01660 0.04553 0.01921 0.06620 0.10773 0.10062 4.10746 0.96514 0.22095 0.17608 1.36522
1 h-m-p 0.0000 0.0001 665.3058 ++ 1187.786881 m 0.0001 47 | 1/42
2 h-m-p 0.0000 0.0000 12739.1658 ++ 1151.375284 m 0.0000 92 | 2/42
3 h-m-p 0.0000 0.0000 10609.0983 ++ 1136.400143 m 0.0000 137 | 3/42
4 h-m-p 0.0000 0.0000 4985.5721 ++ 1125.321255 m 0.0000 182 | 4/42
5 h-m-p 0.0000 0.0000 1893.2731 ++ 1102.608421 m 0.0000 227 | 5/42
6 h-m-p 0.0000 0.0000 841.4928 ++ 1099.774575 m 0.0000 272 | 6/42
7 h-m-p 0.0000 0.0000 982.2177 ++ 1095.588195 m 0.0000 317 | 7/42
8 h-m-p 0.0000 0.0000 2822.0906 ++ 1083.086499 m 0.0000 362 | 8/42
9 h-m-p 0.0000 0.0000 192485.6781 ++ 1081.723543 m 0.0000 407 | 9/42
10 h-m-p 0.0000 0.0000 9191.9540 ++ 1071.861713 m 0.0000 452 | 10/42
11 h-m-p 0.0000 0.0000 27031.1223 ++ 1071.190820 m 0.0000 497 | 11/42
12 h-m-p 0.0000 0.0000 1614.5180 ++ 1070.612024 m 0.0000 542 | 12/42
13 h-m-p 0.0000 0.0000 9801.1060 ++ 1061.021694 m 0.0000 587 | 13/42
14 h-m-p 0.0000 0.0000 3426.9398 ++ 1055.732171 m 0.0000 632 | 14/42
15 h-m-p 0.0000 0.0000 3557.7715 ++ 1050.144580 m 0.0000 677 | 15/42
16 h-m-p 0.0000 0.0000 1747.8631 ++ 1048.072956 m 0.0000 722 | 16/42
17 h-m-p 0.0000 0.0000 1773.5913 ++ 1046.951001 m 0.0000 767 | 17/42
18 h-m-p 0.0000 0.0000 1555.2906 ++ 1043.418070 m 0.0000 812 | 18/42
19 h-m-p 0.0000 0.0000 1173.8466 ++ 1038.485769 m 0.0000 857 | 19/42
20 h-m-p 0.0000 0.0000 637.7897 ++ 1036.982247 m 0.0000 902 | 20/42
21 h-m-p 0.0000 0.0003 132.9394 +YCYCCCC 1030.289250 6 0.0002 959 | 20/42
22 h-m-p 0.0000 0.0001 490.5374 +YYYYYCCCCC 1026.036552 9 0.0001 1018 | 20/42
23 h-m-p 0.0000 0.0001 227.3848 YCYCCC 1025.070436 5 0.0001 1071 | 20/42
24 h-m-p 0.0000 0.0002 108.6016 YCYCCC 1024.374768 5 0.0001 1124 | 20/42
25 h-m-p 0.0000 0.0002 83.2361 YCYCCC 1024.016393 5 0.0001 1177 | 20/42
26 h-m-p 0.0001 0.0005 107.1651 +YYCCCCC 1022.586212 6 0.0003 1233 | 20/42
27 h-m-p 0.0001 0.0007 57.4052 YCYCCC 1022.017877 5 0.0003 1286 | 20/42
28 h-m-p 0.0003 0.0016 42.9414 +YYYCCC 1020.155837 5 0.0012 1339 | 20/42
29 h-m-p 0.0013 0.0083 40.6754 ++ 1012.841246 m 0.0083 1384 | 21/42
30 h-m-p 0.0004 0.0022 99.8023 +YYYYYCC 1010.114600 6 0.0017 1437 | 21/42
31 h-m-p 0.0003 0.0013 166.5811 ++ 1006.916339 m 0.0013 1482 | 22/42
32 h-m-p 0.0081 0.0405 12.7440 CCCCC 1005.850519 4 0.0147 1535 | 22/42
33 h-m-p 0.0068 0.0339 24.9631 YCCC 1004.187403 3 0.0128 1585 | 22/42
34 h-m-p 0.0561 0.2805 1.4363 +YCCCC 1002.664639 4 0.1535 1638 | 22/42
35 h-m-p 0.0223 0.1114 8.8958 YCCCC 1002.341051 4 0.0106 1690 | 22/42
36 h-m-p 0.0466 0.3408 2.0189 YCCC 1001.701956 3 0.0834 1740 | 21/42
37 h-m-p 0.0055 0.0273 21.9089 CYC 1001.606458 2 0.0012 1788 | 21/42
38 h-m-p 0.0086 0.1202 2.9360 +CYCCC 1000.945385 4 0.0574 1841 | 21/42
39 h-m-p 0.2479 1.9138 0.6799 YCCC 1000.416496 3 0.4002 1891 | 21/42
40 h-m-p 0.7024 3.6202 0.3873 CYC 999.930891 2 0.8013 1960 | 21/42
41 h-m-p 0.9376 6.5769 0.3310 CYC 999.686974 2 1.1059 2029 | 21/42
42 h-m-p 0.8171 5.4930 0.4480 CC 999.470057 1 0.7984 2097 | 21/42
43 h-m-p 0.9358 5.8847 0.3822 CCC 999.237461 2 1.1322 2167 | 21/42
44 h-m-p 1.0009 8.0000 0.4323 C 999.119451 0 1.1749 2233 | 21/42
45 h-m-p 1.3319 8.0000 0.3814 CYC 999.008547 2 1.4274 2302 | 21/42
46 h-m-p 1.6000 8.0000 0.3297 CYC 998.940916 2 1.7622 2371 | 21/42
47 h-m-p 1.4035 8.0000 0.4140 CCC 998.912284 2 1.3040 2441 | 21/42
48 h-m-p 1.5829 8.0000 0.3410 CCC 998.885233 2 1.8327 2511 | 21/42
49 h-m-p 1.3851 8.0000 0.4513 C 998.870299 0 1.3795 2577 | 21/42
50 h-m-p 1.6000 8.0000 0.3051 CC 998.864179 1 1.3700 2645 | 21/42
51 h-m-p 1.6000 8.0000 0.2239 YC 998.860554 1 3.5042 2712 | 21/42
52 h-m-p 1.6000 8.0000 0.2970 CC 998.858054 1 2.0981 2780 | 21/42
53 h-m-p 1.6000 8.0000 0.3123 CC 998.856773 1 2.1620 2848 | 21/42
54 h-m-p 1.6000 8.0000 0.3209 CC 998.856145 1 2.3431 2916 | 21/42
55 h-m-p 1.6000 8.0000 0.2919 YC 998.855838 1 2.9670 2983 | 21/42
56 h-m-p 1.6000 8.0000 0.3306 YC 998.855696 1 2.4940 3050 | 21/42
57 h-m-p 1.6000 8.0000 0.3306 Y 998.855638 0 2.8238 3116 | 21/42
58 h-m-p 1.6000 8.0000 0.3115 C 998.855615 0 2.3902 3182 | 21/42
59 h-m-p 1.6000 8.0000 0.3370 Y 998.855603 0 2.9767 3248 | 21/42
60 h-m-p 1.6000 8.0000 0.3430 C 998.855599 0 2.0667 3314 | 21/42
61 h-m-p 1.6000 8.0000 0.3160 Y 998.855597 0 2.8285 3380 | 21/42
62 h-m-p 1.6000 8.0000 0.3346 C 998.855596 0 2.3407 3446 | 21/42
63 h-m-p 1.6000 8.0000 0.3620 C 998.855596 0 2.5552 3512 | 21/42
64 h-m-p 1.6000 8.0000 0.3136 C 998.855596 0 2.0509 3578 | 21/42
65 h-m-p 1.6000 8.0000 0.3171 Y 998.855595 0 3.6882 3644 | 21/42
66 h-m-p 1.6000 8.0000 0.3320 C 998.855595 0 1.8432 3710 | 21/42
67 h-m-p 1.6000 8.0000 0.3513 Y 998.855595 0 3.8479 3776 | 21/42
68 h-m-p 1.6000 8.0000 0.3093 C 998.855595 0 2.0739 3842 | 21/42
69 h-m-p 1.3986 8.0000 0.4587 +Y 998.855595 0 3.7060 3909 | 21/42
70 h-m-p 1.6000 8.0000 0.4096 C 998.855595 0 2.3136 3975 | 21/42
71 h-m-p 1.6000 8.0000 0.2755 C 998.855595 0 1.5342 4041 | 21/42
72 h-m-p 1.6000 8.0000 0.1561 ++ 998.855595 m 8.0000 4107 | 21/42
73 h-m-p 1.2596 8.0000 0.9912 --Y 998.855595 0 0.0332 4175 | 21/42
74 h-m-p 1.5746 8.0000 0.0209 ----Y 998.855595 0 0.0015 4245 | 21/42
75 h-m-p 0.0160 8.0000 0.0252 -------------.. | 21/42
76 h-m-p 0.0159 7.9278 0.0016 ---------C 998.855595 0 0.0000 4397 | 21/42
77 h-m-p 0.0160 8.0000 0.0007 -------------.. | 21/42
78 h-m-p 0.0159 7.9324 0.0016 ------------- | 21/42
79 h-m-p 0.0159 7.9324 0.0016 -------------
Out..
lnL = -998.855595
4629 lfun, 18516 eigenQcodon, 513819 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -1009.519456 S = -983.631789 -26.054579
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 76 patterns 4:38
did 20 / 76 patterns 4:38
did 30 / 76 patterns 4:38
did 40 / 76 patterns 4:38
did 50 / 76 patterns 4:38
did 60 / 76 patterns 4:38
did 70 / 76 patterns 4:39
did 76 / 76 patterns 4:39end of tree file.
Time used: 4:39
Model 7: beta
TREE # 1
(12, 16, ((((((11, 13, 18, 21, 27, (26, 1, 6, 14, 23), 4, 30, 3, 2, 7, 19, 25, 24, 9, 29, 28), 17), 22), 10), 8), 5, 15, 20)); MP score: 35
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
37
0.107619 0.036174 0.020692 0.100085 0.069072 0.064667 0.090671 0.064532 0.076808 0.106222 0.085129 0.083869 0.100846 0.052567 0.099144 0.071897 0.055589 0.085849 0.057185 0.061553 0.052922 0.061442 0.068116 0.015607 0.060284 0.086748 0.034386 0.023178 0.030915 0.069436 0.070121 0.093049 0.048448 0.083545 0.057779 0.029679 0.103057 4.107423 0.869032 1.380712
ntime & nrate & np: 37 1 40
Bounds (np=40):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 5.302210
np = 40
lnL0 = -1319.866149
Iterating by ming2
Initial: fx= 1319.866149
x= 0.10762 0.03617 0.02069 0.10008 0.06907 0.06467 0.09067 0.06453 0.07681 0.10622 0.08513 0.08387 0.10085 0.05257 0.09914 0.07190 0.05559 0.08585 0.05719 0.06155 0.05292 0.06144 0.06812 0.01561 0.06028 0.08675 0.03439 0.02318 0.03091 0.06944 0.07012 0.09305 0.04845 0.08354 0.05778 0.02968 0.10306 4.10742 0.86903 1.38071
1 h-m-p 0.0000 0.0002 755.6243 +++ 1225.088296 m 0.0002 86 | 1/40
2 h-m-p 0.0000 0.0000 5451996.9121 +YYCCYCCC 1206.106116 7 0.0000 182 | 1/40
3 h-m-p 0.0000 0.0000 12425.9200 ++ 1204.179539 m 0.0000 264 | 1/40
4 h-m-p 0.0000 0.0000 1253.1394 ++ 1196.523661 m 0.0000 346 | 2/40
5 h-m-p 0.0000 0.0000 1002.5637 ++ 1188.580706 m 0.0000 428 | 3/40
6 h-m-p 0.0000 0.0000 1978.4001 +YYYYCYCCCC 1177.347421 9 0.0000 523 | 3/40
7 h-m-p 0.0000 0.0000 771.3346 +YYYYCCC 1171.708956 6 0.0000 612 | 3/40
8 h-m-p 0.0000 0.0000 1675.0471 ++ 1167.090772 m 0.0000 692 | 4/40
9 h-m-p 0.0000 0.0000 898.2296 +YYYYYCCCCC 1160.807480 9 0.0000 786 | 4/40
10 h-m-p 0.0000 0.0000 9280.5864 +YCYYYCCCCC 1145.751569 9 0.0000 880 | 4/40
11 h-m-p 0.0000 0.0000 2004.5152 ++ 1139.194797 m 0.0000 959 | 4/40
12 h-m-p 0.0000 0.0000 8348.5425 +YYCCCC 1133.381780 5 0.0000 1047 | 4/40
13 h-m-p 0.0000 0.0000 3606.5334 +YYYCCC 1126.991566 5 0.0000 1134 | 4/40
14 h-m-p 0.0000 0.0000 11288.6244 +YYCYCC 1121.965469 5 0.0000 1221 | 4/40
15 h-m-p 0.0000 0.0000 8993.7183 YCYCCC 1120.019934 5 0.0000 1308 | 4/40
16 h-m-p 0.0000 0.0000 8362.8712 +YYYYCC 1118.063859 5 0.0000 1394 | 4/40
17 h-m-p 0.0000 0.0000 10297.3986 ++ 1111.458425 m 0.0000 1473 | 5/40
18 h-m-p 0.0000 0.0000 30954.4172 ++ 1100.945440 m 0.0000 1552 | 6/40
19 h-m-p 0.0000 0.0000 20713.6244 ++ 1091.269310 m 0.0000 1630 | 7/40
20 h-m-p 0.0000 0.0000 36564.2548 ++ 1088.587692 m 0.0000 1707 | 8/40
21 h-m-p 0.0000 0.0000 3974.6305 ++ 1088.341357 m 0.0000 1783 | 9/40
22 h-m-p 0.0000 0.0000 12677.7908 ++ 1081.339828 m 0.0000 1858 | 10/40
23 h-m-p 0.0000 0.0000 5215.6279 ++ 1073.202013 m 0.0000 1932 | 11/40
24 h-m-p 0.0000 0.0000 1739.7348 ++ 1067.074277 m 0.0000 2005 | 12/40
25 h-m-p 0.0000 0.0000 3392.6343 ++ 1061.547002 m 0.0000 2077 | 13/40
26 h-m-p 0.0000 0.0000 1744.3238 ++ 1052.347987 m 0.0000 2148 | 14/40
27 h-m-p 0.0000 0.0000 1357.4709 ++ 1050.928411 m 0.0000 2218 | 15/40
28 h-m-p 0.0000 0.0000 2219.6464 ++ 1044.120213 m 0.0000 2287 | 16/40
29 h-m-p 0.0000 0.0000 1263.2947 ++ 1038.214455 m 0.0000 2355 | 17/40
30 h-m-p 0.0000 0.0000 627.0254 ++ 1037.969238 m 0.0000 2422 | 18/40
31 h-m-p 0.0000 0.0000 794.7818 ++ 1035.986985 m 0.0000 2488 | 19/40
32 h-m-p 0.0000 0.0000 576.0715 ++ 1035.016024 m 0.0000 2553 | 20/40
33 h-m-p 0.0001 0.0137 18.3396 ++++ 1028.463422 m 0.0137 2619 | 20/40
34 h-m-p 0.0002 0.0011 54.8922 +YYCCC 1026.375932 4 0.0007 2689 | 20/40
35 h-m-p 0.0033 0.0481 12.3226 +YCYCYCCC 1019.944171 7 0.0359 2765 | 20/40
36 h-m-p 0.0651 8.0000 6.8025 YYYYYYY 1018.269407 6 0.0651 2834 | 20/40
37 h-m-p 0.1941 0.9706 0.2446 +YYYCYCCCC 1009.756308 8 0.8170 2910 | 20/40
38 h-m-p 0.0723 0.3616 1.4269 +YCYCCC 1007.144768 5 0.2179 2983 | 20/40
39 h-m-p 0.2638 4.1784 1.1784 +YCCC 1004.841170 3 0.7650 3052 | 20/40
40 h-m-p 0.3303 1.6517 0.4097 +YYCYCCC 1002.581641 6 1.0869 3125 | 20/40
41 h-m-p 0.6621 3.3104 0.3165 YCCC 1001.223821 3 1.6291 3193 | 20/40
42 h-m-p 1.4079 7.0393 0.1766 CCCCC 1000.454715 4 1.9450 3264 | 20/40
43 h-m-p 1.6000 8.0000 0.1783 CCC 1000.046229 2 2.2088 3331 | 20/40
44 h-m-p 1.6000 8.0000 0.1329 CCC 999.813092 2 1.8270 3398 | 20/40
45 h-m-p 1.6000 8.0000 0.1027 CCCC 999.715983 3 1.9371 3467 | 20/40
46 h-m-p 1.6000 8.0000 0.0877 YCCC 999.624120 3 3.0942 3535 | 20/40
47 h-m-p 1.6000 8.0000 0.1418 CCC 999.565298 2 2.3785 3602 | 20/40
48 h-m-p 1.6000 8.0000 0.0621 YCC 999.484749 2 3.6335 3668 | 20/40
49 h-m-p 1.6000 8.0000 0.0235 YCC 999.430825 2 3.4193 3734 | 20/40
50 h-m-p 1.6000 8.0000 0.0487 +CC 999.319310 1 6.3195 3800 | 20/40
51 h-m-p 1.6000 8.0000 0.0861 CC 999.225641 1 2.1922 3865 | 20/40
52 h-m-p 1.0028 8.0000 0.1882 YC 999.202084 1 2.2314 3929 | 20/40
53 h-m-p 1.6000 8.0000 0.1025 CCC 999.181566 2 2.4629 3996 | 20/40
54 h-m-p 1.6000 8.0000 0.0538 YC 999.163653 1 3.8577 4060 | 20/40
55 h-m-p 1.6000 8.0000 0.0363 CC 999.152954 1 2.4003 4125 | 20/40
56 h-m-p 1.6000 8.0000 0.0452 ++ 999.119768 m 8.0000 4188 | 20/40
57 h-m-p 0.5772 8.0000 0.6263 +YC 999.065659 1 1.6584 4253 | 20/40
58 h-m-p 1.6000 8.0000 0.0888 CCC 999.041907 2 2.3968 4320 | 20/40
59 h-m-p 1.6000 8.0000 0.0797 YC 999.028871 1 2.9009 4384 | 20/40
60 h-m-p 1.6000 8.0000 0.0531 YC 999.023843 1 2.8432 4448 | 20/40
61 h-m-p 1.6000 8.0000 0.0872 +YC 999.013186 1 5.4138 4513 | 20/40
62 h-m-p 1.6000 8.0000 0.0181 YC 999.004656 1 3.9134 4577 | 20/40
63 h-m-p 0.9021 8.0000 0.0785 +CC 998.997876 1 3.1904 4643 | 20/40
64 h-m-p 1.6000 8.0000 0.0883 C 998.996857 0 1.5015 4706 | 20/40
65 h-m-p 1.6000 8.0000 0.0317 ++ 998.995814 m 8.0000 4769 | 20/40
66 h-m-p 1.6000 8.0000 0.0728 +YC 998.991212 1 6.9458 4834 | 20/40
67 h-m-p 1.6000 8.0000 0.0301 CC 998.988288 1 2.3363 4899 | 20/40
68 h-m-p 1.6000 8.0000 0.0261 YC 998.987697 1 2.8176 4963 | 20/40
69 h-m-p 1.6000 8.0000 0.0297 ++ 998.985325 m 8.0000 5026 | 20/40
70 h-m-p 1.6000 8.0000 0.0170 CC 998.985003 1 2.2070 5091 | 20/40
71 h-m-p 1.2697 8.0000 0.0295 ++ 998.982670 m 8.0000 5154 | 20/40
72 h-m-p 0.1142 8.0000 2.0652 ++YC 998.969384 1 1.2311 5220 | 20/40
73 h-m-p 1.6000 8.0000 0.1124 CC 998.967991 1 2.0541 5285 | 20/40
74 h-m-p 1.6000 8.0000 0.0358 +Y 998.966187 0 6.8319 5349 | 20/40
75 h-m-p 0.9371 8.0000 0.2610 ++ 998.953638 m 8.0000 5412 | 20/40
76 h-m-p 0.7024 8.0000 2.9728 +CC 998.936187 1 2.3886 5478 | 20/40
77 h-m-p 1.6000 8.0000 0.8984 CC 998.930033 1 2.1705 5543 | 20/40
78 h-m-p 1.6000 8.0000 0.6014 YC 998.925223 1 3.8267 5607 | 20/40
79 h-m-p 1.6000 8.0000 0.1869 CC 998.922578 1 2.4614 5672 | 20/40
80 h-m-p 0.8923 8.0000 0.5156 ++ 998.911092 m 8.0000 5735 | 20/40
81 h-m-p 0.5434 8.0000 7.5902 +CCC 998.895331 2 1.7946 5803 | 20/40
82 h-m-p 1.6000 8.0000 2.8760 YC 998.888245 1 2.8151 5867 | 20/40
83 h-m-p 1.6000 8.0000 4.5365 YC 998.884779 1 3.0879 5931 | 20/40
84 h-m-p 1.5230 7.6152 4.1404 CC 998.883442 1 2.0573 5996 | 20/40
85 h-m-p 1.6000 8.0000 2.7811 +YC 998.882441 1 4.9607 6061 | 20/40
86 h-m-p 0.6250 3.1248 2.9473 ++ 998.880061 m 3.1248 6124 | 21/40
87 h-m-p 0.6332 8.0000 1.0404 --C 998.880057 0 0.0097 6189 | 21/40
88 h-m-p 0.9642 8.0000 0.0104 ----------------.. | 21/40
89 h-m-p 0.0000 0.0013 18.2195 +C 998.873659 0 0.0000 6328 | 21/40
90 h-m-p 0.0001 0.0017 10.6835 CC 998.871137 1 0.0001 6392 | 21/40
91 h-m-p 0.0007 0.0183 0.8078 -C 998.871123 0 0.0000 6455 | 21/40
92 h-m-p 0.0001 0.0306 0.3439 C 998.871121 0 0.0000 6517 | 21/40
93 h-m-p 0.0008 0.4048 0.0670 -C 998.871121 0 0.0001 6580 | 21/40
94 h-m-p 0.0008 0.4083 0.0215 -C 998.871121 0 0.0001 6643 | 21/40
95 h-m-p 0.0051 2.5520 0.0130 --C 998.871121 0 0.0001 6707 | 21/40
96 h-m-p 0.0050 2.4804 0.0081 -Y 998.871121 0 0.0002 6770 | 21/40
97 h-m-p 0.0043 2.1603 0.0261 -Y 998.871121 0 0.0002 6833 | 21/40
98 h-m-p 0.0119 5.9572 0.1111 -Y 998.871121 0 0.0014 6896 | 21/40
99 h-m-p 0.0003 0.1378 3.2861 Y 998.871119 0 0.0001 6958 | 21/40
100 h-m-p 0.0005 0.2570 6.2818 +Y 998.871086 0 0.0015 7021 | 21/40
101 h-m-p 0.0010 0.1755 9.2161 -Y 998.871085 0 0.0000 7084 | 21/40
102 h-m-p 0.0004 0.2243 1.4333 Y 998.871085 0 0.0001 7146 | 21/40
103 h-m-p 0.0030 1.4928 0.0352 --C 998.871085 0 0.0000 7210 | 21/40
104 h-m-p 0.0026 1.2871 0.0161 -Y 998.871085 0 0.0001 7273 | 21/40
105 h-m-p 0.0160 8.0000 0.0235 Y 998.871083 0 0.0385 7335 | 21/40
106 h-m-p 0.0009 0.4593 16.0257 +YC 998.870997 1 0.0027 7399 | 21/40
107 h-m-p 0.1365 2.7924 0.3142 -----C 998.870997 0 0.0001 7466 | 21/40
108 h-m-p 0.0160 8.0000 0.0011 +++Y 998.870996 0 1.8998 7531 | 21/40
109 h-m-p 1.6000 8.0000 0.0006 C 998.870996 0 1.4142 7593 | 21/40
110 h-m-p 1.6000 8.0000 0.0001 C 998.870996 0 0.3719 7655 | 21/40
111 h-m-p 0.5921 8.0000 0.0000 --Y 998.870996 0 0.0071 7719
Out..
lnL = -998.870996
7720 lfun, 84920 eigenQcodon, 2856400 P(t)
end of tree file.
Time used: 21:58
Model 8: beta&w>1
TREE # 1
(12, 16, ((((((11, 13, 18, 21, 27, (26, 1, 6, 14, 23), 4, 30, 3, 2, 7, 19, 25, 24, 9, 29, 28), 17), 22), 10), 8), 5, 15, 20)); MP score: 35
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
37
0.052876 0.091325 0.018290 0.082834 0.097061 0.107033 0.057778 0.095533 0.101055 0.065059 0.048703 0.019095 0.074332 0.075563 0.054689 0.105749 0.100678 0.060657 0.040164 0.038572 0.015183 0.080742 0.017825 0.089411 0.065516 0.012700 0.101454 0.052894 0.043413 0.097127 0.087558 0.061186 0.047318 0.046802 0.064248 0.059207 0.012113 4.109689 0.900000 0.935672 1.108035 1.300000
ntime & nrate & np: 37 2 42
Bounds (np=42):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 4.349495
np = 42
lnL0 = -1293.603161
Iterating by ming2
Initial: fx= 1293.603161
x= 0.05288 0.09132 0.01829 0.08283 0.09706 0.10703 0.05778 0.09553 0.10105 0.06506 0.04870 0.01909 0.07433 0.07556 0.05469 0.10575 0.10068 0.06066 0.04016 0.03857 0.01518 0.08074 0.01783 0.08941 0.06552 0.01270 0.10145 0.05289 0.04341 0.09713 0.08756 0.06119 0.04732 0.04680 0.06425 0.05921 0.01211 4.10969 0.90000 0.93567 1.10803 1.30000
1 h-m-p 0.0000 0.0001 712.5419 ++ 1247.314085 m 0.0001 89 | 1/42
2 h-m-p 0.0000 0.0000 52620.4459 ++ 1235.827635 m 0.0000 176 | 2/42
3 h-m-p 0.0000 0.0000 3254.8472 ++ 1220.663373 m 0.0000 262 | 3/42
4 h-m-p 0.0000 0.0000 5205.7233 ++ 1151.396032 m 0.0000 347 | 4/42
5 h-m-p 0.0000 0.0000 10442.9184 ++ 1134.570409 m 0.0000 431 | 5/42
6 h-m-p 0.0000 0.0000 5993.3355 ++ 1117.727830 m 0.0000 514 | 6/42
7 h-m-p 0.0000 0.0000 15766.1831 ++ 1105.619776 m 0.0000 596 | 7/42
8 h-m-p 0.0000 0.0000 140849.9443 ++ 1100.478183 m 0.0000 677 | 8/42
9 h-m-p 0.0000 0.0000 2529.5897 ++ 1098.983119 m 0.0000 757 | 9/42
10 h-m-p 0.0000 0.0000 2758.3492 ++ 1072.667818 m 0.0000 836 | 10/42
11 h-m-p 0.0000 0.0000 3454.1208 ++ 1071.992233 m 0.0000 914 | 11/42
12 h-m-p 0.0000 0.0000 3773.6103 ++ 1071.676480 m 0.0000 991 | 12/42
13 h-m-p 0.0000 0.0000 6384.0430 ++ 1057.858611 m 0.0000 1067 | 13/42
14 h-m-p 0.0000 0.0000 6505.5191 ++ 1049.028496 m 0.0000 1142 | 14/42
15 h-m-p 0.0000 0.0000 6006.3356 ++ 1029.237107 m 0.0000 1216 | 15/42
16 h-m-p 0.0000 0.0000 2203.2719 ++ 1028.148707 m 0.0000 1289 | 16/42
17 h-m-p 0.0000 0.0000 1383.6334 ++ 1025.839808 m 0.0000 1361 | 17/42
18 h-m-p 0.0000 0.0000 2024.6810 ++ 1025.763638 m 0.0000 1432 | 18/42
19 h-m-p 0.0000 0.0000 2078.1518 ++ 1025.605621 m 0.0000 1502 | 19/42
20 h-m-p 0.0000 0.0000 742.8907 ++ 1024.661469 m 0.0000 1571 | 20/42
21 h-m-p 0.0000 0.0002 114.7503 +CYYYCC 1022.379587 5 0.0002 1647 | 20/42
22 h-m-p 0.0002 0.0011 28.4831 YCYCCC 1021.713590 5 0.0006 1722 | 20/42
23 h-m-p 0.0001 0.0005 126.1698 YCYCCC 1020.599470 5 0.0002 1797 | 20/42
24 h-m-p 0.0009 0.0111 34.5565 +CYYCCC 1015.550839 5 0.0075 1874 | 20/42
25 h-m-p 0.0009 0.0044 41.4581 ++ 1011.723738 m 0.0044 1941 | 21/42
26 h-m-p 0.0014 0.0072 42.8042 ++ 1008.663745 m 0.0072 2008 | 22/42
27 h-m-p 0.0010 0.0052 77.3326 +YYCYCCC 1006.086541 6 0.0033 2084 | 22/42
28 h-m-p 0.0146 0.0732 3.5398 CCCC 1004.527255 3 0.0221 2155 | 22/42
29 h-m-p 0.0108 0.0539 7.0337 CCCC 1003.466968 3 0.0165 2226 | 22/42
30 h-m-p 0.0115 0.0574 6.3833 YCCCC 1002.479824 4 0.0227 2298 | 22/42
31 h-m-p 0.0080 0.0398 10.7784 CCCC 1001.732307 3 0.0115 2369 | 22/42
32 h-m-p 0.0373 0.1864 1.3973 CCCC 1001.230951 3 0.0594 2440 | 22/42
33 h-m-p 0.0365 0.2135 2.2733 CYC 1000.938566 2 0.0411 2508 | 22/42
34 h-m-p 0.0861 0.5598 1.0855 YCCC 1000.532002 3 0.1722 2578 | 22/42
35 h-m-p 0.0896 0.4481 1.3405 CYC 1000.306446 2 0.0772 2646 | 22/42
36 h-m-p 0.1488 0.7442 0.3663 CCC 1000.131738 2 0.1566 2715 | 22/42
37 h-m-p 0.0822 0.4112 0.2794 CCCC 999.960062 3 0.0976 2786 | 22/42
38 h-m-p 0.1142 0.6260 0.2389 CYC 999.841506 2 0.1059 2854 | 22/42
39 h-m-p 0.0492 2.6738 0.5143 +YC 999.626289 1 0.4818 2921 | 22/42
40 h-m-p 0.1486 0.7428 0.8546 CYC 999.506033 2 0.1425 2989 | 22/42
41 h-m-p 0.3312 1.7073 0.3679 CYC 999.426318 2 0.3083 3057 | 22/42
42 h-m-p 0.6647 8.0000 0.1706 YCCC 999.298471 3 1.0647 3127 | 22/42
43 h-m-p 1.1643 5.8216 0.0952 CYC 999.242971 2 1.1059 3195 | 22/42
44 h-m-p 0.9404 8.0000 0.1119 CC 999.206805 1 0.8929 3262 | 22/42
45 h-m-p 1.6000 8.0000 0.0329 YC 999.189596 1 1.1486 3328 | 22/42
46 h-m-p 1.6000 8.0000 0.0225 CC 999.182441 1 1.6772 3395 | 22/42
47 h-m-p 1.6000 8.0000 0.0135 YC 999.177729 1 3.1682 3461 | 22/42
48 h-m-p 0.8829 8.0000 0.0486 YC 999.173179 1 1.9185 3527 | 22/42
49 h-m-p 1.0690 8.0000 0.0872 +YC 999.164183 1 3.1894 3594 | 22/42
50 h-m-p 1.6000 8.0000 0.1317 +CC 999.139965 1 5.5524 3662 | 22/42
51 h-m-p 1.6000 8.0000 0.2735 +YC 999.093303 1 5.2369 3729 | 22/42
52 h-m-p 1.6000 8.0000 0.6000 YC 999.039856 1 3.6348 3795 | 22/42
53 h-m-p 1.6000 8.0000 1.2600 YCC 998.978617 2 3.1528 3863 | 22/42
54 h-m-p 1.6000 8.0000 1.8378 YCC 998.946486 2 2.6952 3931 | 22/42
55 h-m-p 1.6000 8.0000 2.5910 YC 998.916741 1 3.6509 3997 | 22/42
56 h-m-p 1.6000 8.0000 3.9911 YCC 998.898979 2 2.7080 4065 | 22/42
57 h-m-p 1.6000 8.0000 5.7551 YC 998.884164 1 3.7246 4131 | 22/42
58 h-m-p 0.9433 4.7167 8.6094 +YC 998.875751 1 2.6164 4198 | 22/42
59 h-m-p 0.3093 1.5467 11.6908 ++ 998.871408 m 1.5467 4263 | 22/42
60 h-m-p 0.0000 0.0000 30.7411
h-m-p: 0.00000000e+00 0.00000000e+00 3.07411257e+01 998.871408
.. | 22/42
61 h-m-p 0.0000 0.0024 2.8258 +YC 998.871284 1 0.0000 4392 | 22/42
62 h-m-p 0.0001 0.0195 0.7714 Y 998.871269 0 0.0001 4457 | 22/42
63 h-m-p 0.0004 0.1926 0.1327 Y 998.871269 0 0.0001 4522 | 22/42
64 h-m-p 0.0004 0.2079 0.0840 Y 998.871269 0 0.0001 4587 | 22/42
65 h-m-p 0.0018 0.9171 0.0224 -Y 998.871269 0 0.0001 4653 | 22/42
66 h-m-p 0.0040 1.9928 0.0216 --Y 998.871269 0 0.0000 4720 | 22/42
67 h-m-p 0.0068 3.3918 0.0135 -Y 998.871269 0 0.0002 4786 | 22/42
68 h-m-p 0.0157 7.8617 0.0340 -Y 998.871269 0 0.0008 4852 | 22/42
69 h-m-p 0.0012 0.5949 0.7963 C 998.871268 0 0.0003 4917 | 22/42
70 h-m-p 0.0020 1.0068 2.4286 Y 998.871237 0 0.0035 4982 | 22/42
71 h-m-p 0.0001 0.0467 97.5504 C 998.871200 0 0.0001 5047 | 22/42
72 h-m-p 0.0002 0.0125 63.3563 C 998.871191 0 0.0000 5112 | 22/42
73 h-m-p 0.0018 0.9013 1.3407 -Y 998.871191 0 0.0001 5178 | 22/42
74 h-m-p 0.0005 0.1672 0.2004 -C 998.871191 0 0.0000 5244 | 22/42
75 h-m-p 0.0093 4.6648 0.0037 --Y 998.871191 0 0.0001 5311 | 22/42
76 h-m-p 0.0160 8.0000 0.0032 Y 998.871191 0 0.0126 5376 | 22/42
77 h-m-p 0.0001 0.0533 0.5032 ++Y 998.871189 0 0.0040 5443 | 22/42
78 h-m-p 0.0000 0.0004 58.5442 +Y 998.871178 0 0.0002 5509 | 22/42
79 h-m-p 0.0000 0.0001 106.0917 +C 998.871169 0 0.0001 5575 | 22/42
80 h-m-p 0.0430 0.2152 0.0008 ++ 998.871169 m 0.2152 5640 | 23/42
81 h-m-p 0.2687 8.0000 0.0006 +C 998.871168 0 1.0295 5706 | 23/42
82 h-m-p 1.6000 8.0000 0.0000 ---Y 998.871168 0 0.0103 5773
Out..
lnL = -998.871168
5774 lfun, 69288 eigenQcodon, 2350018 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -1009.385914 S = -983.628530 -64.817594
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 76 patterns 35:29
did 20 / 76 patterns 35:29
did 30 / 76 patterns 35:29
did 40 / 76 patterns 35:29
did 50 / 76 patterns 35:29
did 60 / 76 patterns 35:29
did 70 / 76 patterns 35:30
did 76 / 76 patterns 35:30end of tree file.
Time used: 35:30
The loglikelihoods for models M1, M2, M7 and M8 are -998.855769 -998.855595 -998.870996 -998.871168 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
PC22A_P40_nsp5_VIPR_ALG4_APX55528_1_11277_11861_1_2014_03_01_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
USA_Texas31_2013_nsp5_VIPR_ALG4_658130267_11244_11828_1_2013_07_22_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
USA_Oklahoma471_2014_nsp5_VIPR_ALG4_825144825_11234_11818_1_2014_12_04_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
USA_Minnesota281_2014_nsp5_VIPR_ALG4_825144468_11234_11818_1_2014_03_27_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
NW17_nsp5_VIPR_ALG4_ATY72305_1_11270_11854_1_2015_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
PEDV_GER_L01018_K01_15_08_2015_nsp5_VIPR_ALG4_SNQ27907_1_11279_11863_1_NA_NA_Unknown_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
GDS10_nsp5_VIPR_ALG4_AWV57047_1_11279_11863_1_2013_01_16_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
CH_SCGA_2017_nsp5_VIPR_ALG4_AZL47191_1_11279_11863_1_2017_01_05_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
USA_Minnesota58_2013_nsp5_VIPR_ALG4_658130379_11244_11828_1_2013_11_05_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
PEDV_Hjms_nsp5_VIPR_ALG4_ATG31093_1_11258_11842_1_2015_05_11_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
USA_NorthCarolina66_2013_nsp5_VIPR_ALG4_658130428_11244_11828_1_2013_11_23_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
CH_SCZY103_2017_nsp5_VIPR_ALG4_AZL47215_1_11279_11863_1_2017_12_01_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
OH851_nsp5_VIPR_ALG4_591400268_11279_11863_1_2014_01_15_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
C3_HB2017_nsp5_VIPR_ALG4_AXK47351_1_11279_11863_1_2017_02_19_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
GDS34_nsp5_VIPR_ALG4_QCQ19893_1_11279_11863_1_2014_07_28_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
CH_TP_4_3_2018_nsp5_VIPR_ALG4_QCC26593_1_11281_11865_1_2018_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
IBT_VN_nsp5_VIPR_ALG4_QPX15727_1_11279_11863_1_2018_02_02_Viet_Nam_Swine_PEDV SVASTYVSLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
USA_Missouri93_2013_nsp5_VIPR_ALG4_658130589_11244_11828_1_2013_12_11_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
OKN_2_JPN_2014_nsp5_VIPR_ALG4_948549165_11221_11805_1_2014_02_Japan_Pig_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
GDS22_nsp5_VIPR_ALG4_QCQ19833_1_11279_11863_1_2012_09_23_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
USA_Minnesota67_2013_nsp5_VIPR_ALG4_658130435_11244_11828_1_2013_11_23_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
JS2008_nsp5_VIPR_ALG4_459357910_11255_11839_1_2008_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
PEDV_H18_Barcelona_Vic_nsp5_VIPR_ALG4_QKV43852_1_11283_11867_1_2019_05_11_Spain_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
USA_Missouri164_2014_nsp5_VIPR_ALG4_825144804_11234_11818_1_2014_02_26_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
USA_Illinois260_2014_nsp5_VIPR_ALG4_825144671_11234_11818_1_2014_03_14_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
COL_Antioquia07053_2015_nsp5_VIPR_ALG4_QGQ60281_1_11265_11849_1_2015_06_03_Colombia_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
KMM_1_JPN_2014_nsp5_VIPR_ALG4_948549172_11221_11805_1_2014_01_Japan_Pig_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
USA_Nebraska288_2014_nsp5_VIPR_ALG4_825144678_11237_11821_1_2014_04_02_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
PEDV_MEX_VER_02_2015_nsp5_VIPR_ALG4_AVU05485_1_11109_11693_1_2015_10_21_Mexico_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
KGW_1_JPN_2014_nsp5_VIPR_ALG4_948549221_11221_11805_1_2014_04_Japan_Pig_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLD
*******.****************************************************
PC22A_P40_nsp5_VIPR_ALG4_APX55528_1_11277_11861_1_2014_03_01_USA_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
USA_Texas31_2013_nsp5_VIPR_ALG4_658130267_11244_11828_1_2013_07_22_USA_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKGGVVPLSVI
USA_Oklahoma471_2014_nsp5_VIPR_ALG4_825144825_11234_11818_1_2014_12_04_USA_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
USA_Minnesota281_2014_nsp5_VIPR_ALG4_825144468_11234_11818_1_2014_03_27_USA_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
NW17_nsp5_VIPR_ALG4_ATY72305_1_11270_11854_1_2015_China_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
PEDV_GER_L01018_K01_15_08_2015_nsp5_VIPR_ALG4_SNQ27907_1_11279_11863_1_NA_NA_Unknown_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
GDS10_nsp5_VIPR_ALG4_AWV57047_1_11279_11863_1_2013_01_16_China_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
CH_SCGA_2017_nsp5_VIPR_ALG4_AZL47191_1_11279_11863_1_2017_01_05_China_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
USA_Minnesota58_2013_nsp5_VIPR_ALG4_658130379_11244_11828_1_2013_11_05_USA_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
PEDV_Hjms_nsp5_VIPR_ALG4_ATG31093_1_11258_11842_1_2015_05_11_China_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
USA_NorthCarolina66_2013_nsp5_VIPR_ALG4_658130428_11244_11828_1_2013_11_23_USA_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
CH_SCZY103_2017_nsp5_VIPR_ALG4_AZL47215_1_11279_11863_1_2017_12_01_China_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
OH851_nsp5_VIPR_ALG4_591400268_11279_11863_1_2014_01_15_USA_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
C3_HB2017_nsp5_VIPR_ALG4_AXK47351_1_11279_11863_1_2017_02_19_China_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
GDS34_nsp5_VIPR_ALG4_QCQ19893_1_11279_11863_1_2014_07_28_China_Swine_PEDV RMAEQAAAQMYKDARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
CH_TP_4_3_2018_nsp5_VIPR_ALG4_QCC26593_1_11281_11865_1_2018_China_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
IBT_VN_nsp5_VIPR_ALG4_QPX15727_1_11279_11863_1_2018_02_02_Viet_Nam_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
USA_Missouri93_2013_nsp5_VIPR_ALG4_658130589_11244_11828_1_2013_12_11_USA_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
OKN_2_JPN_2014_nsp5_VIPR_ALG4_948549165_11221_11805_1_2014_02_Japan_Pig_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
GDS22_nsp5_VIPR_ALG4_QCQ19833_1_11279_11863_1_2012_09_23_China_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
USA_Minnesota67_2013_nsp5_VIPR_ALG4_658130435_11244_11828_1_2013_11_23_USA_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
JS2008_nsp5_VIPR_ALG4_459357910_11255_11839_1_2008_China_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
PEDV_H18_Barcelona_Vic_nsp5_VIPR_ALG4_QKV43852_1_11283_11867_1_2019_05_11_Spain_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
USA_Missouri164_2014_nsp5_VIPR_ALG4_825144804_11234_11818_1_2014_02_26_USA_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
USA_Illinois260_2014_nsp5_VIPR_ALG4_825144671_11234_11818_1_2014_03_14_USA_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
COL_Antioquia07053_2015_nsp5_VIPR_ALG4_QGQ60281_1_11265_11849_1_2015_06_03_Colombia_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
KMM_1_JPN_2014_nsp5_VIPR_ALG4_948549172_11221_11805_1_2014_01_Japan_Pig_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
USA_Nebraska288_2014_nsp5_VIPR_ALG4_825144678_11237_11821_1_2014_04_02_USA_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
PEDV_MEX_VER_02_2015_nsp5_VIPR_ALG4_AVU05485_1_11109_11693_1_2015_10_21_Mexico_Swine_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
KGW_1_JPN_2014_nsp5_VIPR_ALG4_948549221_11221_11805_1_2014_04_Japan_Pig_PEDV RMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVI
************:**************************************.********
PC22A_P40_nsp5_VIPR_ALG4_APX55528_1_11277_11861_1_2014_03_01_USA_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
USA_Texas31_2013_nsp5_VIPR_ALG4_658130267_11244_11828_1_2013_07_22_USA_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
USA_Oklahoma471_2014_nsp5_VIPR_ALG4_825144825_11234_11818_1_2014_12_04_USA_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
USA_Minnesota281_2014_nsp5_VIPR_ALG4_825144468_11234_11818_1_2014_03_27_USA_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
NW17_nsp5_VIPR_ALG4_ATY72305_1_11270_11854_1_2015_China_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
PEDV_GER_L01018_K01_15_08_2015_nsp5_VIPR_ALG4_SNQ27907_1_11279_11863_1_NA_NA_Unknown_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
GDS10_nsp5_VIPR_ALG4_AWV57047_1_11279_11863_1_2013_01_16_China_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
CH_SCGA_2017_nsp5_VIPR_ALG4_AZL47191_1_11279_11863_1_2017_01_05_China_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
USA_Minnesota58_2013_nsp5_VIPR_ALG4_658130379_11244_11828_1_2013_11_05_USA_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
PEDV_Hjms_nsp5_VIPR_ALG4_ATG31093_1_11258_11842_1_2015_05_11_China_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIGIKDNDDKVVHVKEVTAQNAESL
USA_NorthCarolina66_2013_nsp5_VIPR_ALG4_658130428_11244_11828_1_2013_11_23_USA_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
CH_SCZY103_2017_nsp5_VIPR_ALG4_AZL47215_1_11279_11863_1_2017_12_01_China_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
OH851_nsp5_VIPR_ALG4_591400268_11279_11863_1_2014_01_15_USA_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
C3_HB2017_nsp5_VIPR_ALG4_AXK47351_1_11279_11863_1_2017_02_19_China_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
GDS34_nsp5_VIPR_ALG4_QCQ19893_1_11279_11863_1_2014_07_28_China_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
CH_TP_4_3_2018_nsp5_VIPR_ALG4_QCC26593_1_11281_11865_1_2018_China_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
IBT_VN_nsp5_VIPR_ALG4_QPX15727_1_11279_11863_1_2018_02_02_Viet_Nam_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
USA_Missouri93_2013_nsp5_VIPR_ALG4_658130589_11244_11828_1_2013_12_11_USA_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
OKN_2_JPN_2014_nsp5_VIPR_ALG4_948549165_11221_11805_1_2014_02_Japan_Pig_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
GDS22_nsp5_VIPR_ALG4_QCQ19833_1_11279_11863_1_2012_09_23_China_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
USA_Minnesota67_2013_nsp5_VIPR_ALG4_658130435_11244_11828_1_2013_11_23_USA_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
JS2008_nsp5_VIPR_ALG4_459357910_11255_11839_1_2008_China_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
PEDV_H18_Barcelona_Vic_nsp5_VIPR_ALG4_QKV43852_1_11283_11867_1_2019_05_11_Spain_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
USA_Missouri164_2014_nsp5_VIPR_ALG4_825144804_11234_11818_1_2014_02_26_USA_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
USA_Illinois260_2014_nsp5_VIPR_ALG4_825144671_11234_11818_1_2014_03_14_USA_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHFKEVTAQNAESL
COL_Antioquia07053_2015_nsp5_VIPR_ALG4_QGQ60281_1_11265_11849_1_2015_06_03_Colombia_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
KMM_1_JPN_2014_nsp5_VIPR_ALG4_948549172_11221_11805_1_2014_01_Japan_Pig_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
USA_Nebraska288_2014_nsp5_VIPR_ALG4_825144678_11237_11821_1_2014_04_02_USA_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
PEDV_MEX_VER_02_2015_nsp5_VIPR_ALG4_AVU05485_1_11109_11693_1_2015_10_21_Mexico_Swine_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
KGW_1_JPN_2014_nsp5_VIPR_ALG4_948549221_11221_11805_1_2014_04_Japan_Pig_PEDV PAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESL
*************************************.*****.****.***********
PC22A_P40_nsp5_VIPR_ALG4_APX55528_1_11277_11861_1_2014_03_01_USA_Swine_PEDV SWPLVLGCERIVKLQ
USA_Texas31_2013_nsp5_VIPR_ALG4_658130267_11244_11828_1_2013_07_22_USA_Swine_PEDV SWPLVLGCERIVKLQ
USA_Oklahoma471_2014_nsp5_VIPR_ALG4_825144825_11234_11818_1_2014_12_04_USA_Swine_PEDV SWPLVLGCERIVKLQ
USA_Minnesota281_2014_nsp5_VIPR_ALG4_825144468_11234_11818_1_2014_03_27_USA_Swine_PEDV SWPLVLGCERIVKLQ
NW17_nsp5_VIPR_ALG4_ATY72305_1_11270_11854_1_2015_China_Swine_PEDV SWPLVLGCERIVKLQ
PEDV_GER_L01018_K01_15_08_2015_nsp5_VIPR_ALG4_SNQ27907_1_11279_11863_1_NA_NA_Unknown_PEDV SWPLVLGCERIVKLQ
GDS10_nsp5_VIPR_ALG4_AWV57047_1_11279_11863_1_2013_01_16_China_Swine_PEDV SWPLVLGCERIVKLQ
CH_SCGA_2017_nsp5_VIPR_ALG4_AZL47191_1_11279_11863_1_2017_01_05_China_Swine_PEDV SWPLVLGCERIVKLQ
USA_Minnesota58_2013_nsp5_VIPR_ALG4_658130379_11244_11828_1_2013_11_05_USA_Swine_PEDV SWPLVLGCERIVKLQ
PEDV_Hjms_nsp5_VIPR_ALG4_ATG31093_1_11258_11842_1_2015_05_11_China_Swine_PEDV SWPLVLGCERIVKLQ
USA_NorthCarolina66_2013_nsp5_VIPR_ALG4_658130428_11244_11828_1_2013_11_23_USA_Swine_PEDV SWPLVLGCERIVKLQ
CH_SCZY103_2017_nsp5_VIPR_ALG4_AZL47215_1_11279_11863_1_2017_12_01_China_Swine_PEDV SWPLVLGCERIVKLQ
OH851_nsp5_VIPR_ALG4_591400268_11279_11863_1_2014_01_15_USA_Swine_PEDV SWPLVLGCERIVKLQ
C3_HB2017_nsp5_VIPR_ALG4_AXK47351_1_11279_11863_1_2017_02_19_China_Swine_PEDV SWPLVLGCERIVKLQ
GDS34_nsp5_VIPR_ALG4_QCQ19893_1_11279_11863_1_2014_07_28_China_Swine_PEDV SWPLVLGCERIVKLQ
CH_TP_4_3_2018_nsp5_VIPR_ALG4_QCC26593_1_11281_11865_1_2018_China_Swine_PEDV SWPLVLGCERIVKLQ
IBT_VN_nsp5_VIPR_ALG4_QPX15727_1_11279_11863_1_2018_02_02_Viet_Nam_Swine_PEDV SWPLVLGCERIVKLQ
USA_Missouri93_2013_nsp5_VIPR_ALG4_658130589_11244_11828_1_2013_12_11_USA_Swine_PEDV SWPLVLGCERIVKLQ
OKN_2_JPN_2014_nsp5_VIPR_ALG4_948549165_11221_11805_1_2014_02_Japan_Pig_PEDV SWPLVLGCERIVKLQ
GDS22_nsp5_VIPR_ALG4_QCQ19833_1_11279_11863_1_2012_09_23_China_Swine_PEDV SWPLVLGCERIVKLQ
USA_Minnesota67_2013_nsp5_VIPR_ALG4_658130435_11244_11828_1_2013_11_23_USA_Swine_PEDV SWPLVLGCERIVKLQ
JS2008_nsp5_VIPR_ALG4_459357910_11255_11839_1_2008_China_Swine_PEDV SWPLVLGCERIVKLQ
PEDV_H18_Barcelona_Vic_nsp5_VIPR_ALG4_QKV43852_1_11283_11867_1_2019_05_11_Spain_Swine_PEDV SWPLVLGCERIVKLQ
USA_Missouri164_2014_nsp5_VIPR_ALG4_825144804_11234_11818_1_2014_02_26_USA_Swine_PEDV SWPLVLGCERIVKLQ
USA_Illinois260_2014_nsp5_VIPR_ALG4_825144671_11234_11818_1_2014_03_14_USA_Swine_PEDV SWPLVLGCERIVKLQ
COL_Antioquia07053_2015_nsp5_VIPR_ALG4_QGQ60281_1_11265_11849_1_2015_06_03_Colombia_Swine_PEDV SWPLVLGCERIVKLQ
KMM_1_JPN_2014_nsp5_VIPR_ALG4_948549172_11221_11805_1_2014_01_Japan_Pig_PEDV SWPLVLGCERIVKLQ
USA_Nebraska288_2014_nsp5_VIPR_ALG4_825144678_11237_11821_1_2014_04_02_USA_Swine_PEDV SWPLVLGCERIVKLQ
PEDV_MEX_VER_02_2015_nsp5_VIPR_ALG4_AVU05485_1_11109_11693_1_2015_10_21_Mexico_Swine_PEDV SWPLVLGCERIVKLQ
KGW_1_JPN_2014_nsp5_VIPR_ALG4_948549221_11221_11805_1_2014_04_Japan_Pig_PEDV SWPLVLGCERIVKLQ
***************
>PC22A_P40_nsp5_VIPR_ALG4_APX55528_1_11277_11861_1_2014_03_01_USA_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCAAGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCATTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >USA_Texas31_2013_nsp5_VIPR_ALG4_658130267_11244_11828_1_2013_07_22_USA_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCACGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGGTGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >USA_Oklahoma471_2014_nsp5_VIPR_ALG4_825144825_11234_11818_1_2014_12_04_USA_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCACGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >USA_Minnesota281_2014_nsp5_VIPR_ALG4_825144468_11234_11818_1_2014_03_27_USA_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCACGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >NW17_nsp5_VIPR_ALG4_ATY72305_1_11270_11854_1_2015_China_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCTATGAATGTGGCAAAGAGTGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAGCAGGCTGCAGCACAGATGTACAAAGAGGCAAGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGATATGTCTTCTGTAGACACTATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >PEDV_GER_L01018_K01_15_08_2015_nsp5_VIPR_ALG4_SNQ27907_1_11279_11863_1_NA_NA_Unknown_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCAAGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCATTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >GDS10_nsp5_VIPR_ALG4_AWV57047_1_11279_11863_1_2013_01_16_China_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCAAGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >CH_SCGA_2017_nsp5_VIPR_ALG4_AZL47191_1_11279_11863_1_2017_01_05_China_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCTATGAATGTGGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAGCAAGCTGCAGCACAGATGTACAAGGAGGCAAGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGATATGTCTTCTGTAGACACTATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTCACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >USA_Minnesota58_2013_nsp5_VIPR_ALG4_658130379_11244_11828_1_2013_11_05_USA_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCACGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >PEDV_Hjms_nsp5_VIPR_ALG4_ATG31093_1_11258_11842_1_2015_05_11_China_Swine_PEDV AGTGTTGCATCTACTTATGTCGGCTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGACGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCTATGAATGTGGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCAAGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGATATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGGTATCAAGGACAATGATGACAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >USA_NorthCarolina66_2013_nsp5_VIPR_ALG4_658130428_11244_11828_1_2013_11_23_USA_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCACGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >CH_SCZY103_2017_nsp5_VIPR_ALG4_AZL47215_1_11279_11863_1_2017_12_01_China_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCTATGAATGTGGCAAAGAGTGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAGCAGGCTGCAGCACAGATGTACAAAGAGGCAAGAGCGGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGATATGTCTTCTGTAGACACTATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >OH851_nsp5_VIPR_ALG4_591400268_11279_11863_1_2014_01_15_USA_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCACGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >C3_HB2017_nsp5_VIPR_ALG4_AXK47351_1_11279_11863_1_2017_02_19_China_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCGCGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCAAGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGATATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCATTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACATGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >GDS34_nsp5_VIPR_ALG4_QCQ19893_1_11279_11863_1_2014_07_28_China_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCTATGAATGTGGCAAAGAGTGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAGCAGGCTGCAGCACAGATGTACAAAGATGCAAGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGATATGTCTTCTGTGGACACTATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >CH_TP_4_3_2018_nsp5_VIPR_ALG4_QCC26593_1_11281_11865_1_2018_China_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCTATGAATGTGGCAAAGAGTGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAGCAGGCTGCAGCACAGATGTACAAAGAGGCAAGAGCGGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGATATGTCTTCTGTAGACACTATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >IBT_VN_nsp5_VIPR_ALG4_QPX15727_1_11279_11863_1_2018_02_02_Viet_Nam_Swine_PEDV AGTGTTGCATCTACTTATGTCAGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGTCATGCTATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCACGAGCAGTCAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGATATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCATTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTAGGGTGTGAGCGTATTGTCAAGCTCCAG >USA_Missouri93_2013_nsp5_VIPR_ALG4_658130589_11244_11828_1_2013_12_11_USA_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCACGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >OKN_2_JPN_2014_nsp5_VIPR_ALG4_948549165_11221_11805_1_2014_02_Japan_Pig_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCACGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >GDS22_nsp5_VIPR_ALG4_QCQ19833_1_11279_11863_1_2012_09_23_China_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCTATGAATGTGGCAAAGAGTGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAGCAGGCTGCAGCACAGATGTACAAAGAGGCAAGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGATATGTCTTCTGTAGACACTATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >USA_Minnesota67_2013_nsp5_VIPR_ALG4_658130435_11244_11828_1_2013_11_23_USA_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCACGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >JS2008_nsp5_VIPR_ALG4_459357910_11255_11839_1_2008_China_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCTATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCAAGGGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGATATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCGGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTTAAGCTCCAG >PEDV_H18_Barcelona_Vic_nsp5_VIPR_ALG4_QKV43852_1_11283_11867_1_2019_05_11_Spain_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGTCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCAAGAGCAGTTAATAGGAAGTCCAAAGTAGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCATTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >USA_Missouri164_2014_nsp5_VIPR_ALG4_825144804_11234_11818_1_2014_02_26_USA_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCACGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >USA_Illinois260_2014_nsp5_VIPR_ALG4_825144671_11234_11818_1_2014_03_14_USA_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCACGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACTTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >COL_Antioquia07053_2015_nsp5_VIPR_ALG4_QGQ60281_1_11265_11849_1_2015_06_03_Colombia_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCAAGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCATTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >KMM_1_JPN_2014_nsp5_VIPR_ALG4_948549172_11221_11805_1_2014_01_Japan_Pig_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCACGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >USA_Nebraska288_2014_nsp5_VIPR_ALG4_825144678_11237_11821_1_2014_04_02_USA_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCACGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >PEDV_MEX_VER_02_2015_nsp5_VIPR_ALG4_AVU05485_1_11109_11693_1_2015_10_21_Mexico_Swine_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCACGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG >KGW_1_JPN_2014_nsp5_VIPR_ALG4_948549221_11221_11805_1_2014_04_Japan_Pig_PEDV AGTGTTGCATCTACTTATGTCGGTTTGCCTTCTTATGTCATTTATGAAAATGCACGCCAACAGTATGAAGATGCTGTTAATAATGGTTCTCCACCTCAGTTGGTTAAGCAATTGCGCCATGCCATGAATGTAGCAAAGAGCGAATTTGACCGTGAGGCTTCTACTCAGCGTAAGCTTGATAGAATGGCGGAACAGGCTGCAGCACAGATGTACAAAGAGGCACGAGCAGTTAATAGGAAGTCCAAAGTTGTAAGTGCTATGCATTCACTGCTTTTTGGTATGTTGAGACGTTTGGACATGTCTTCTGTAGACACCATTCTCAACTTGGCAAAGGATGGGGTTGTACCTCTGTCTGTCATACCGGCAGTCAGTGCTACTAAGCTTAACATTGTTACTTCTGATATCGATTCTTATAATCGTATCCAGCGTGAGGGATGTGTCCACTACGCTGGTACCATTTGGAATATAATTGATATCAAGGACAATGATGGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAATGCTGAGTCCCTGTCATGGCCCCTGGTCCTTGGGTGTGAGCGTATTGTCAAGCTCCAG
>PC22A_P40_nsp5_VIPR_ALG4_APX55528_1_11277_11861_1_2014_03_01_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >USA_Texas31_2013_nsp5_VIPR_ALG4_658130267_11244_11828_1_2013_07_22_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKGGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >USA_Oklahoma471_2014_nsp5_VIPR_ALG4_825144825_11234_11818_1_2014_12_04_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >USA_Minnesota281_2014_nsp5_VIPR_ALG4_825144468_11234_11818_1_2014_03_27_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >NW17_nsp5_VIPR_ALG4_ATY72305_1_11270_11854_1_2015_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >PEDV_GER_L01018_K01_15_08_2015_nsp5_VIPR_ALG4_SNQ27907_1_11279_11863_1_NA_NA_Unknown_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >GDS10_nsp5_VIPR_ALG4_AWV57047_1_11279_11863_1_2013_01_16_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >CH_SCGA_2017_nsp5_VIPR_ALG4_AZL47191_1_11279_11863_1_2017_01_05_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >USA_Minnesota58_2013_nsp5_VIPR_ALG4_658130379_11244_11828_1_2013_11_05_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >PEDV_Hjms_nsp5_VIPR_ALG4_ATG31093_1_11258_11842_1_2015_05_11_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIGIKDNDDKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >USA_NorthCarolina66_2013_nsp5_VIPR_ALG4_658130428_11244_11828_1_2013_11_23_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >CH_SCZY103_2017_nsp5_VIPR_ALG4_AZL47215_1_11279_11863_1_2017_12_01_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >OH851_nsp5_VIPR_ALG4_591400268_11279_11863_1_2014_01_15_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >C3_HB2017_nsp5_VIPR_ALG4_AXK47351_1_11279_11863_1_2017_02_19_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >GDS34_nsp5_VIPR_ALG4_QCQ19893_1_11279_11863_1_2014_07_28_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKDARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >CH_TP_4_3_2018_nsp5_VIPR_ALG4_QCC26593_1_11281_11865_1_2018_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >IBT_VN_nsp5_VIPR_ALG4_QPX15727_1_11279_11863_1_2018_02_02_Viet_Nam_Swine_PEDV SVASTYVSLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >USA_Missouri93_2013_nsp5_VIPR_ALG4_658130589_11244_11828_1_2013_12_11_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >OKN_2_JPN_2014_nsp5_VIPR_ALG4_948549165_11221_11805_1_2014_02_Japan_Pig_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >GDS22_nsp5_VIPR_ALG4_QCQ19833_1_11279_11863_1_2012_09_23_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >USA_Minnesota67_2013_nsp5_VIPR_ALG4_658130435_11244_11828_1_2013_11_23_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >JS2008_nsp5_VIPR_ALG4_459357910_11255_11839_1_2008_China_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >PEDV_H18_Barcelona_Vic_nsp5_VIPR_ALG4_QKV43852_1_11283_11867_1_2019_05_11_Spain_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >USA_Missouri164_2014_nsp5_VIPR_ALG4_825144804_11234_11818_1_2014_02_26_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >USA_Illinois260_2014_nsp5_VIPR_ALG4_825144671_11234_11818_1_2014_03_14_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHFKEVTAQNAESLSWPLVLGCERIVKLQ >COL_Antioquia07053_2015_nsp5_VIPR_ALG4_QGQ60281_1_11265_11849_1_2015_06_03_Colombia_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >KMM_1_JPN_2014_nsp5_VIPR_ALG4_948549172_11221_11805_1_2014_01_Japan_Pig_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >USA_Nebraska288_2014_nsp5_VIPR_ALG4_825144678_11237_11821_1_2014_04_02_USA_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >PEDV_MEX_VER_02_2015_nsp5_VIPR_ALG4_AVU05485_1_11109_11693_1_2015_10_21_Mexico_Swine_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ >KGW_1_JPN_2014_nsp5_VIPR_ALG4_948549221_11221_11805_1_2014_04_Japan_Pig_PEDV SVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCERIVKLQ
Reading sequence file /data//pss_subsets/LZW_nsp5_VIPR_ALG4_672096717_11279_11863_1_2012_02_China_Unknown_PEDV.result/original_alignment/codeml/fasta/LZW_nsp5_VIPR_ALG4_672096717_11279_11863_1_2012_02_China_Unknown_PEDV.result.1
Found 30 sequences of length 585
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 0.8%
Found 9 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0%100.0%
Using a window size of 80 with k as 1
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 20 polymorphic sites
**p-Value(s)**
----------
NSS: 6.59e-01 (1000 permutations)
Max Chi^2: 8.99e-01 (1000 permutations)
PHI (Permutation): 2.16e-01 (1000 permutations)
PHI (Normal): 6.58e-02
#NEXUS
[ID: 1877710773]
begin taxa;
dimensions ntax=30;
taxlabels
CH_SCZY103_2017_nsp5_VIPR_ALG4_AZL47215_1_11279_11863_1_2017_12_01_China_Swine_PEDV
USA_NorthCarolina66_2013_nsp5_VIPR_ALG4_658130428_11244_11828_1_2013_11_23_USA_Swine_PEDV
OH851_nsp5_VIPR_ALG4_591400268_11279_11863_1_2014_01_15_USA_Swine_PEDV
IBT_VN_nsp5_VIPR_ALG4_QPX15727_1_11279_11863_1_2018_02_02_Viet_Nam_Swine_PEDV
CH_TP_4_3_2018_nsp5_VIPR_ALG4_QCC26593_1_11281_11865_1_2018_China_Swine_PEDV
USA_Missouri93_2013_nsp5_VIPR_ALG4_658130589_11244_11828_1_2013_12_11_USA_Swine_PEDV
JS2008_nsp5_VIPR_ALG4_459357910_11255_11839_1_2008_China_Swine_PEDV
USA_Minnesota67_2013_nsp5_VIPR_ALG4_658130435_11244_11828_1_2013_11_23_USA_Swine_PEDV
KMM_1_JPN_2014_nsp5_VIPR_ALG4_948549172_11221_11805_1_2014_01_Japan_Pig_PEDV
COL_Antioquia07053_2015_nsp5_VIPR_ALG4_QGQ60281_1_11265_11849_1_2015_06_03_Colombia_Swine_PEDV
USA_Minnesota281_2014_nsp5_VIPR_ALG4_825144468_11234_11818_1_2014_03_27_USA_Swine_PEDV
KGW_1_JPN_2014_nsp5_VIPR_ALG4_948549221_11221_11805_1_2014_04_Japan_Pig_PEDV
CH_SCGA_2017_nsp5_VIPR_ALG4_AZL47191_1_11279_11863_1_2017_01_05_China_Swine_PEDV
PC22A_P40_nsp5_VIPR_ALG4_APX55528_1_11277_11861_1_2014_03_01_USA_Swine_PEDV
USA_Oklahoma471_2014_nsp5_VIPR_ALG4_825144825_11234_11818_1_2014_12_04_USA_Swine_PEDV
USA_Texas31_2013_nsp5_VIPR_ALG4_658130267_11244_11828_1_2013_07_22_USA_Swine_PEDV
PEDV_GER_L01018_K01_15_08_2015_nsp5_VIPR_ALG4_SNQ27907_1_11279_11863_1_NA_NA_Unknown_PEDV
NW17_nsp5_VIPR_ALG4_ATY72305_1_11270_11854_1_2015_China_Swine_PEDV
GDS10_nsp5_VIPR_ALG4_AWV57047_1_11279_11863_1_2013_01_16_China_Swine_PEDV
PEDV_Hjms_nsp5_VIPR_ALG4_ATG31093_1_11258_11842_1_2015_05_11_China_Swine_PEDV
C3_HB2017_nsp5_VIPR_ALG4_AXK47351_1_11279_11863_1_2017_02_19_China_Swine_PEDV
GDS34_nsp5_VIPR_ALG4_QCQ19893_1_11279_11863_1_2014_07_28_China_Swine_PEDV
GDS22_nsp5_VIPR_ALG4_QCQ19833_1_11279_11863_1_2012_09_23_China_Swine_PEDV
OKN_2_JPN_2014_nsp5_VIPR_ALG4_948549165_11221_11805_1_2014_02_Japan_Pig_PEDV
USA_Illinois260_2014_nsp5_VIPR_ALG4_825144671_11234_11818_1_2014_03_14_USA_Swine_PEDV
PEDV_H18_Barcelona_Vic_nsp5_VIPR_ALG4_QKV43852_1_11283_11867_1_2019_05_11_Spain_Swine_PEDV
USA_Missouri164_2014_nsp5_VIPR_ALG4_825144804_11234_11818_1_2014_02_26_USA_Swine_PEDV
USA_Minnesota58_2013_nsp5_VIPR_ALG4_658130379_11244_11828_1_2013_11_05_USA_Swine_PEDV
PEDV_MEX_VER_02_2015_nsp5_VIPR_ALG4_AVU05485_1_11109_11693_1_2015_10_21_Mexico_Swine_PEDV
USA_Nebraska288_2014_nsp5_VIPR_ALG4_825144678_11237_11821_1_2014_04_02_USA_Swine_PEDV
;
end;
begin trees;
translate
1 CH_SCZY103_2017_nsp5_VIPR_ALG4_AZL47215_1_11279_11863_1_2017_12_01_China_Swine_PEDV,
2 USA_NorthCarolina66_2013_nsp5_VIPR_ALG4_658130428_11244_11828_1_2013_11_23_USA_Swine_PEDV,
3 OH851_nsp5_VIPR_ALG4_591400268_11279_11863_1_2014_01_15_USA_Swine_PEDV,
4 IBT_VN_nsp5_VIPR_ALG4_QPX15727_1_11279_11863_1_2018_02_02_Viet_Nam_Swine_PEDV,
5 CH_TP_4_3_2018_nsp5_VIPR_ALG4_QCC26593_1_11281_11865_1_2018_China_Swine_PEDV,
6 USA_Missouri93_2013_nsp5_VIPR_ALG4_658130589_11244_11828_1_2013_12_11_USA_Swine_PEDV,
7 JS2008_nsp5_VIPR_ALG4_459357910_11255_11839_1_2008_China_Swine_PEDV,
8 USA_Minnesota67_2013_nsp5_VIPR_ALG4_658130435_11244_11828_1_2013_11_23_USA_Swine_PEDV,
9 KMM_1_JPN_2014_nsp5_VIPR_ALG4_948549172_11221_11805_1_2014_01_Japan_Pig_PEDV,
10 COL_Antioquia07053_2015_nsp5_VIPR_ALG4_QGQ60281_1_11265_11849_1_2015_06_03_Colombia_Swine_PEDV,
11 USA_Minnesota281_2014_nsp5_VIPR_ALG4_825144468_11234_11818_1_2014_03_27_USA_Swine_PEDV,
12 KGW_1_JPN_2014_nsp5_VIPR_ALG4_948549221_11221_11805_1_2014_04_Japan_Pig_PEDV,
13 CH_SCGA_2017_nsp5_VIPR_ALG4_AZL47191_1_11279_11863_1_2017_01_05_China_Swine_PEDV,
14 PC22A_P40_nsp5_VIPR_ALG4_APX55528_1_11277_11861_1_2014_03_01_USA_Swine_PEDV,
15 USA_Oklahoma471_2014_nsp5_VIPR_ALG4_825144825_11234_11818_1_2014_12_04_USA_Swine_PEDV,
16 USA_Texas31_2013_nsp5_VIPR_ALG4_658130267_11244_11828_1_2013_07_22_USA_Swine_PEDV,
17 PEDV_GER_L01018_K01_15_08_2015_nsp5_VIPR_ALG4_SNQ27907_1_11279_11863_1_NA_NA_Unknown_PEDV,
18 NW17_nsp5_VIPR_ALG4_ATY72305_1_11270_11854_1_2015_China_Swine_PEDV,
19 GDS10_nsp5_VIPR_ALG4_AWV57047_1_11279_11863_1_2013_01_16_China_Swine_PEDV,
20 PEDV_Hjms_nsp5_VIPR_ALG4_ATG31093_1_11258_11842_1_2015_05_11_China_Swine_PEDV,
21 C3_HB2017_nsp5_VIPR_ALG4_AXK47351_1_11279_11863_1_2017_02_19_China_Swine_PEDV,
22 GDS34_nsp5_VIPR_ALG4_QCQ19893_1_11279_11863_1_2014_07_28_China_Swine_PEDV,
23 GDS22_nsp5_VIPR_ALG4_QCQ19833_1_11279_11863_1_2012_09_23_China_Swine_PEDV,
24 OKN_2_JPN_2014_nsp5_VIPR_ALG4_948549165_11221_11805_1_2014_02_Japan_Pig_PEDV,
25 USA_Illinois260_2014_nsp5_VIPR_ALG4_825144671_11234_11818_1_2014_03_14_USA_Swine_PEDV,
26 PEDV_H18_Barcelona_Vic_nsp5_VIPR_ALG4_QKV43852_1_11283_11867_1_2019_05_11_Spain_Swine_PEDV,
27 USA_Missouri164_2014_nsp5_VIPR_ALG4_825144804_11234_11818_1_2014_02_26_USA_Swine_PEDV,
28 USA_Minnesota58_2013_nsp5_VIPR_ALG4_658130379_11244_11828_1_2013_11_05_USA_Swine_PEDV,
29 PEDV_MEX_VER_02_2015_nsp5_VIPR_ALG4_AVU05485_1_11109_11693_1_2015_10_21_Mexico_Swine_PEDV,
30 USA_Nebraska288_2014_nsp5_VIPR_ALG4_825144678_11237_11821_1_2014_04_02_USA_Swine_PEDV
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:5.249304e-04,5:5.470233e-04,((((((2:5.161094e-04,3:5.062679e-04,6:5.395609e-04,8:5.341312e-04,9:5.188361e-04,(10:5.214787e-04,14:5.550458e-04,17:5.432320e-04,21:2.679553e-03,26:2.080524e-03)0.604:1.290724e-03,11:5.668902e-04,12:5.432030e-04,15:5.081159e-04,16:1.320159e-03,19:5.688356e-04,24:5.389217e-04,25:1.275715e-03,27:5.238678e-04,28:5.074272e-04,29:5.694446e-04,30:4.953317e-04)0.587:1.673588e-03,4:5.159630e-03)0.833:1.628956e-03,7:2.858288e-03)0.920:1.354323e-03,20:3.621932e-03)0.997:2.214170e-03,13:2.948950e-03)0.853:1.267224e-03,18:5.354123e-04,22:2.060563e-03,23:5.228363e-04)0.987:1.286416e-03);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:5.249304e-04,5:5.470233e-04,((((((2:5.161094e-04,3:5.062679e-04,6:5.395609e-04,8:5.341312e-04,9:5.188361e-04,(10:5.214787e-04,14:5.550458e-04,17:5.432320e-04,21:2.679553e-03,26:2.080524e-03):1.290724e-03,11:5.668902e-04,12:5.432030e-04,15:5.081159e-04,16:1.320159e-03,19:5.688356e-04,24:5.389217e-04,25:1.275715e-03,27:5.238678e-04,28:5.074272e-04,29:5.694446e-04,30:4.953317e-04):1.673588e-03,4:5.159630e-03):1.628956e-03,7:2.858288e-03):1.354323e-03,20:3.621932e-03):2.214170e-03,13:2.948950e-03):1.267224e-03,18:5.354123e-04,22:2.060563e-03,23:5.228363e-04):1.286416e-03);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1064.26 -1085.58
2 -1064.36 -1090.98
--------------------------------------
TOTAL -1064.31 -1090.29
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.072887 0.000329 0.040798 0.110183 0.070536 496.99 530.31 1.000
r(A<->C){all} 0.078614 0.002447 0.000420 0.170553 0.068966 405.24 447.82 1.000
r(A<->G){all} 0.294008 0.006398 0.143120 0.447223 0.288558 198.86 278.94 1.001
r(A<->T){all} 0.061560 0.001285 0.002315 0.128759 0.055260 439.95 496.24 1.000
r(C<->G){all} 0.031229 0.001060 0.000009 0.096940 0.020939 253.56 374.26 1.000
r(C<->T){all} 0.450955 0.009008 0.264936 0.632598 0.450710 161.48 225.98 1.001
r(G<->T){all} 0.083635 0.001758 0.012599 0.167170 0.077388 444.02 465.53 1.000
pi(A){all} 0.257165 0.000310 0.224280 0.292876 0.257084 988.76 1030.35 1.001
pi(C){all} 0.194856 0.000265 0.164043 0.228545 0.194429 1058.72 1059.62 1.000
pi(G){all} 0.252688 0.000298 0.221690 0.288377 0.252725 998.37 1021.43 1.000
pi(T){all} 0.295291 0.000335 0.261460 0.333925 0.295063 983.17 1014.67 1.001
alpha{1,2} 0.331421 0.314820 0.000284 1.384802 0.134910 690.61 737.74 1.000
alpha{3} 1.822717 1.631630 0.000011 4.367303 1.567319 776.62 788.60 1.000
pinvar{all} 0.537554 0.043864 0.094857 0.829878 0.591141 216.58 255.80 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/LZW_nsp5_VIPR_ALG4_672096717_11279_11863_1_2012_02_China_Unknown_PEDV.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 30 ls = 195
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 2 2 2 2 2 2 | Ser TCT 9 9 9 9 9 9 | Tyr TAT 5 5 5 5 5 5 | Cys TGT 2 2 2 2 2 2
TTC 0 0 0 0 0 0 | TCC 2 2 2 2 2 2 | TAC 2 2 2 2 2 2 | TGC 0 0 0 0 0 0
Leu TTA 0 0 0 0 0 0 | TCA 2 2 2 2 2 2 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 6 6 6 6 6 6 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 4 4 4 4 4 4 | Pro CCT 3 3 3 3 3 3 | His CAT 3 2 2 2 2 3 | Arg CGT 6 6 6 6 6 6
CTC 2 2 2 2 2 2 | CCC 1 1 1 1 1 1 | CAC 1 2 2 2 2 1 | CGC 2 2 2 2 2 2
CTA 0 0 0 0 0 0 | CCA 1 1 1 1 1 1 | Gln CAA 2 2 2 2 2 2 | CGA 0 1 1 1 0 0
CTG 4 4 4 4 4 4 | CCG 1 1 1 1 1 1 | CAG 8 8 8 8 8 8 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 6 6 6 6 6 6 | Thr ACT 4 4 4 4 5 4 | Asn AAT 9 9 9 9 9 9 | Ser AGT 3 3 3 3 4 3
ATC 3 3 3 3 3 3 | ACC 3 3 3 3 2 3 | AAC 2 2 2 2 2 2 | AGC 1 1 1 1 0 1
ATA 2 2 2 2 2 2 | ACA 0 0 0 0 0 0 | Lys AAA 2 2 2 2 2 2 | Arg AGA 3 2 2 2 3 3
Met ATG 6 6 6 6 6 6 | ACG 0 0 0 0 0 0 | AAG 10 10 10 10 10 10 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 8 8 8 8 8 8 | Ala GCT 7 7 7 7 8 7 | Asp GAT 7 6 7 7 8 7 | Gly GGT 4 5 4 4 4 4
GTC 7 7 7 7 7 7 | GCC 1 1 1 1 0 1 | GAC 4 4 4 4 3 4 | GGC 1 1 1 1 1 1
GTA 6 6 6 6 5 6 | GCA 10 10 10 10 10 10 | Glu GAA 4 4 4 4 3 4 | GGA 1 1 1 1 1 1
GTG 1 1 1 1 2 1 | GCG 1 1 1 1 1 1 | GAG 6 6 6 6 7 6 | GGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 2 2 2 2 2 2 | Ser TCT 9 9 9 9 9 9 | Tyr TAT 5 5 5 5 5 5 | Cys TGT 2 2 2 2 2 2
TTC 0 0 0 0 0 0 | TCC 2 2 2 2 2 2 | TAC 2 2 2 2 2 2 | TGC 0 0 0 0 0 0
Leu TTA 0 0 0 0 0 0 | TCA 2 2 2 2 2 2 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 6 6 6 6 6 6 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 4 4 4 4 4 4 | Pro CCT 3 3 3 3 3 3 | His CAT 2 2 2 2 2 2 | Arg CGT 6 6 6 6 6 6
CTC 2 2 2 2 2 2 | CCC 1 1 1 1 1 1 | CAC 2 2 2 2 2 2 | CGC 2 2 2 2 2 2
CTA 0 0 0 0 0 0 | CCA 1 1 1 1 1 1 | Gln CAA 2 3 2 2 2 2 | CGA 0 0 1 0 1 0
CTG 4 4 4 4 4 4 | CCG 1 1 1 1 1 1 | CAG 8 7 8 8 8 8 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 6 6 6 6 6 6 | Thr ACT 4 5 4 4 4 5 | Asn AAT 9 9 9 9 9 9 | Ser AGT 3 3 3 3 3 4
ATC 3 3 3 3 3 3 | ACC 3 2 3 3 3 2 | AAC 2 2 2 2 2 2 | AGC 1 1 1 1 1 0
ATA 2 2 2 2 2 2 | ACA 0 0 0 0 0 0 | Lys AAA 2 1 2 2 2 2 | Arg AGA 3 3 2 3 2 3
Met ATG 6 6 6 6 6 6 | ACG 0 0 0 0 0 0 | AAG 10 11 10 10 10 10 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 8 7 8 8 8 8 | Ala GCT 7 8 7 8 7 8 | Asp GAT 7 8 7 6 7 8 | Gly GGT 4 4 4 4 4 4
GTC 7 8 7 7 7 7 | GCC 1 0 1 0 1 0 | GAC 4 3 4 5 4 3 | GGC 1 1 1 1 1 1
GTA 6 5 6 5 6 5 | GCA 10 10 10 10 10 9 | Glu GAA 4 3 4 4 4 3 | GGA 1 1 1 1 1 1
GTG 1 2 1 2 1 2 | GCG 1 1 1 1 1 2 | GAG 6 7 6 6 6 7 | GGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 2 2 2 2 2 2 | Ser TCT 9 9 9 9 9 9 | Tyr TAT 5 5 5 5 5 5 | Cys TGT 2 2 2 2 2 2
TTC 0 0 0 0 0 0 | TCC 2 2 2 2 2 2 | TAC 2 2 2 2 2 2 | TGC 0 0 0 0 0 0
Leu TTA 0 0 0 0 0 0 | TCA 2 2 2 2 2 2 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 6 6 6 6 6 6 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 4 4 4 4 3 4 | Pro CCT 3 3 3 3 3 3 | His CAT 2 4 2 2 3 2 | Arg CGT 6 6 6 6 7 6
CTC 2 2 2 2 2 2 | CCC 1 1 1 1 1 1 | CAC 2 0 2 2 1 2 | CGC 2 2 2 2 1 2
CTA 0 0 0 0 1 0 | CCA 1 1 1 1 1 1 | Gln CAA 2 2 2 2 2 2 | CGA 1 0 0 0 1 1
CTG 4 4 4 4 4 4 | CCG 1 1 1 1 1 1 | CAG 8 8 8 8 8 8 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 6 6 6 6 6 6 | Thr ACT 4 4 5 5 4 4 | Asn AAT 9 9 9 9 9 9 | Ser AGT 3 3 4 4 4 3
ATC 3 3 3 3 3 3 | ACC 3 3 2 2 3 3 | AAC 2 2 2 2 2 2 | AGC 1 1 0 0 1 1
ATA 2 2 2 2 2 2 | ACA 0 0 0 0 0 0 | Lys AAA 2 2 2 2 2 2 | Arg AGA 2 3 3 3 2 2
Met ATG 6 6 6 6 6 6 | ACG 0 0 0 0 0 0 | AAG 10 10 10 10 10 10 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 8 8 8 8 7 8 | Ala GCT 7 7 8 8 8 7 | Asp GAT 7 8 9 8 8 7 | Gly GGT 4 4 4 4 3 4
GTC 7 7 7 7 8 7 | GCC 1 1 0 0 0 1 | GAC 4 3 3 3 3 4 | GGC 1 1 1 1 1 1
GTA 6 6 4 5 6 6 | GCA 10 9 10 9 10 10 | Glu GAA 4 4 3 3 4 4 | GGA 1 1 1 1 1 1
GTG 1 1 3 2 1 1 | GCG 1 2 1 2 1 1 | GAG 6 6 6 7 6 6 | GGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 2 2 2 2 2 2 | Ser TCT 9 9 9 9 9 9 | Tyr TAT 5 5 5 5 5 5 | Cys TGT 2 2 2 2 2 2
TTC 0 0 0 0 0 0 | TCC 2 2 2 2 2 2 | TAC 2 2 2 2 2 2 | TGC 0 0 0 0 0 0
Leu TTA 0 0 0 0 0 0 | TCA 2 2 2 2 2 2 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 6 6 6 6 6 6 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 4 4 4 4 4 4 | Pro CCT 3 3 3 3 3 3 | His CAT 2 2 2 2 3 2 | Arg CGT 6 6 6 6 7 6
CTC 2 2 2 2 2 2 | CCC 1 1 1 1 1 1 | CAC 2 2 2 2 1 2 | CGC 2 2 2 2 1 2
CTA 0 0 0 0 0 0 | CCA 1 1 1 1 1 1 | Gln CAA 2 2 2 2 2 2 | CGA 1 0 1 0 0 1
CTG 4 4 4 4 4 4 | CCG 1 1 1 1 1 1 | CAG 8 8 8 8 8 8 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 6 6 6 6 6 6 | Thr ACT 4 5 4 4 4 4 | Asn AAT 9 9 9 9 9 9 | Ser AGT 3 4 3 3 3 3
ATC 3 3 3 3 3 3 | ACC 3 2 3 3 3 3 | AAC 2 2 2 2 2 2 | AGC 1 0 1 1 1 1
ATA 2 2 2 2 2 2 | ACA 0 0 0 0 0 0 | Lys AAA 2 2 2 2 2 2 | Arg AGA 2 3 2 2 3 2
Met ATG 6 6 6 6 6 6 | ACG 0 0 0 0 0 0 | AAG 10 10 10 10 10 10 | AGG 1 1 1 2 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 8 8 8 9 7 8 | Ala GCT 7 8 7 7 7 7 | Asp GAT 7 8 7 8 7 7 | Gly GGT 4 4 4 4 4 4
GTC 7 7 7 6 7 7 | GCC 1 0 1 0 1 1 | GAC 4 3 4 3 4 4 | GGC 1 1 1 1 1 1
GTA 6 5 6 6 7 6 | GCA 10 10 10 10 10 10 | Glu GAA 4 3 4 4 4 4 | GGA 1 1 1 1 1 1
GTG 1 2 1 1 1 1 | GCG 1 1 1 2 1 1 | GAG 6 7 6 6 6 6 | GGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 3 2 2 2 2 2 | Ser TCT 9 9 9 9 9 9 | Tyr TAT 5 5 5 5 5 5 | Cys TGT 2 2 2 2 2 2
TTC 0 0 0 0 0 0 | TCC 2 2 2 2 2 2 | TAC 2 2 2 2 2 2 | TGC 0 0 0 0 0 0
Leu TTA 0 0 0 0 0 0 | TCA 2 2 2 2 2 2 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 6 6 6 6 6 6 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 4 4 4 4 4 4 | Pro CCT 3 3 3 3 3 3 | His CAT 2 3 2 2 2 2 | Arg CGT 6 6 6 6 6 6
CTC 2 2 2 2 2 2 | CCC 1 1 1 1 1 1 | CAC 2 1 2 2 2 2 | CGC 2 2 2 2 2 2
CTA 0 0 0 0 0 0 | CCA 1 1 1 1 1 1 | Gln CAA 2 2 2 2 2 2 | CGA 1 0 1 1 1 1
CTG 4 4 4 4 4 4 | CCG 1 1 1 1 1 1 | CAG 8 8 8 8 8 8 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 6 6 6 6 6 6 | Thr ACT 4 4 4 4 4 4 | Asn AAT 9 9 9 9 9 9 | Ser AGT 3 3 3 3 3 3
ATC 3 3 3 3 3 3 | ACC 3 3 3 3 3 3 | AAC 2 2 2 2 2 2 | AGC 1 1 1 1 1 1
ATA 2 2 2 2 2 2 | ACA 0 0 0 0 0 0 | Lys AAA 2 2 2 2 2 2 | Arg AGA 2 3 2 2 2 2
Met ATG 6 6 6 6 6 6 | ACG 0 0 0 0 0 0 | AAG 10 10 10 10 10 10 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 7 8 8 8 8 8 | Ala GCT 7 7 7 7 7 7 | Asp GAT 7 7 7 7 7 7 | Gly GGT 4 4 4 4 4 4
GTC 7 7 7 7 7 7 | GCC 1 1 1 1 1 1 | GAC 4 4 4 4 4 4 | GGC 1 1 1 1 1 1
GTA 6 6 6 6 6 6 | GCA 10 10 10 10 10 10 | Glu GAA 4 4 4 4 4 4 | GGA 1 1 1 1 1 1
GTG 1 1 1 1 1 1 | GCG 1 1 1 1 1 1 | GAG 6 6 6 6 6 6 | GGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C303
position 1: T:0.16410 C:0.19487 A:0.28205 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.42051 C:0.16410 A:0.16923 G:0.24615
Average T:0.29231 C:0.19658 A:0.26154 G:0.24957
#2: C624
position 1: T:0.16410 C:0.20000 A:0.27692 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.32821 G:0.14872
position 3: T:0.41538 C:0.16923 A:0.16923 G:0.24615
Average T:0.29060 C:0.20000 A:0.25812 G:0.25128
#3: C619
position 1: T:0.16410 C:0.20000 A:0.27692 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.41538 C:0.16923 A:0.16923 G:0.24615
Average T:0.29060 C:0.20000 A:0.25983 G:0.24957
#4: C543
position 1: T:0.16410 C:0.20000 A:0.27692 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.41538 C:0.16923 A:0.16923 G:0.24615
Average T:0.29060 C:0.20000 A:0.25983 G:0.24957
#5: C283
position 1: T:0.16410 C:0.19487 A:0.28205 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.43590 C:0.14872 A:0.15897 G:0.25641
Average T:0.29744 C:0.19145 A:0.25812 G:0.25299
#6: C369
position 1: T:0.16410 C:0.19487 A:0.28205 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.42051 C:0.16410 A:0.16923 G:0.24615
Average T:0.29231 C:0.19658 A:0.26154 G:0.24957
#7: C117
position 1: T:0.16410 C:0.19487 A:0.28205 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.41538 C:0.16923 A:0.16923 G:0.24615
Average T:0.29060 C:0.19829 A:0.26154 G:0.24957
#8: C60
position 1: T:0.16410 C:0.19487 A:0.28205 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.42564 C:0.15897 A:0.15897 G:0.25641
Average T:0.29402 C:0.19487 A:0.25812 G:0.25299
#9: C559
position 1: T:0.16410 C:0.20000 A:0.27692 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.41538 C:0.16923 A:0.16923 G:0.24615
Average T:0.29060 C:0.20000 A:0.25983 G:0.24957
#10: C380
position 1: T:0.16410 C:0.19487 A:0.28205 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.41538 C:0.16923 A:0.16410 G:0.25128
Average T:0.29060 C:0.19829 A:0.25983 G:0.25128
#11: C598
position 1: T:0.16410 C:0.20000 A:0.27692 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.41538 C:0.16923 A:0.16923 G:0.24615
Average T:0.29060 C:0.20000 A:0.25983 G:0.24957
#12: C65
position 1: T:0.16410 C:0.19487 A:0.28205 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.43590 C:0.14872 A:0.15385 G:0.26154
Average T:0.29744 C:0.19145 A:0.25641 G:0.25470
#13: C287
position 1: T:0.16410 C:0.20000 A:0.27692 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.41538 C:0.16923 A:0.16923 G:0.24615
Average T:0.29060 C:0.20000 A:0.25983 G:0.24957
#14: C27
position 1: T:0.16410 C:0.19487 A:0.28205 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.43077 C:0.15385 A:0.16410 G:0.25128
Average T:0.29573 C:0.19316 A:0.25983 G:0.25128
#15: C141
position 1: T:0.16410 C:0.19487 A:0.28205 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.44103 C:0.14872 A:0.15385 G:0.25641
Average T:0.29915 C:0.19145 A:0.25641 G:0.25299
#16: C71
position 1: T:0.16410 C:0.19487 A:0.28205 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.43590 C:0.14872 A:0.15385 G:0.26154
Average T:0.29744 C:0.19145 A:0.25641 G:0.25470
#17: C195
position 1: T:0.16410 C:0.20000 A:0.28205 G:0.35385
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.42564 C:0.15385 A:0.17436 G:0.24615
Average T:0.29402 C:0.19487 A:0.26325 G:0.24786
#18: C589
position 1: T:0.16410 C:0.20000 A:0.27692 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.41538 C:0.16923 A:0.16923 G:0.24615
Average T:0.29060 C:0.20000 A:0.25983 G:0.24957
#19: C291
position 1: T:0.16410 C:0.20000 A:0.27692 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.41538 C:0.16923 A:0.16923 G:0.24615
Average T:0.29060 C:0.20000 A:0.25983 G:0.24957
#20: C129
position 1: T:0.16410 C:0.19487 A:0.28205 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.43590 C:0.14872 A:0.15897 G:0.25641
Average T:0.29744 C:0.19145 A:0.25812 G:0.25299
#21: C565
position 1: T:0.16410 C:0.20000 A:0.27692 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.41538 C:0.16923 A:0.16923 G:0.24615
Average T:0.29060 C:0.20000 A:0.25983 G:0.24957
#22: C207
position 1: T:0.16410 C:0.19487 A:0.28205 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.42564 C:0.15385 A:0.16410 G:0.25641
Average T:0.29402 C:0.19316 A:0.25983 G:0.25299
#23: C377
position 1: T:0.16410 C:0.19487 A:0.28205 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.42051 C:0.15897 A:0.17436 G:0.24615
Average T:0.29231 C:0.19487 A:0.26325 G:0.24957
#24: C583
position 1: T:0.16410 C:0.20000 A:0.27692 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.41538 C:0.16923 A:0.16923 G:0.24615
Average T:0.29060 C:0.20000 A:0.25983 G:0.24957
#25: C483
position 1: T:0.16923 C:0.20000 A:0.27692 G:0.35385
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.41538 C:0.16923 A:0.16923 G:0.24615
Average T:0.29231 C:0.20000 A:0.25983 G:0.24786
#26: C81
position 1: T:0.16410 C:0.19487 A:0.28205 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.42051 C:0.16410 A:0.16923 G:0.24615
Average T:0.29231 C:0.19658 A:0.26154 G:0.24957
#27: C224
position 1: T:0.16410 C:0.20000 A:0.27692 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.41538 C:0.16923 A:0.16923 G:0.24615
Average T:0.29060 C:0.20000 A:0.25983 G:0.24957
#28: C595
position 1: T:0.16410 C:0.20000 A:0.27692 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.41538 C:0.16923 A:0.16923 G:0.24615
Average T:0.29060 C:0.20000 A:0.25983 G:0.24957
#29: C407
position 1: T:0.16410 C:0.20000 A:0.27692 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.41538 C:0.16923 A:0.16923 G:0.24615
Average T:0.29060 C:0.20000 A:0.25983 G:0.24957
#30: C223
position 1: T:0.16410 C:0.20000 A:0.27692 G:0.35897
position 2: T:0.29231 C:0.23077 A:0.33333 G:0.14359
position 3: T:0.41538 C:0.16923 A:0.16923 G:0.24615
Average T:0.29060 C:0.20000 A:0.25983 G:0.24957
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 61 | Ser S TCT 270 | Tyr Y TAT 150 | Cys C TGT 60
TTC 0 | TCC 60 | TAC 60 | TGC 0
Leu L TTA 0 | TCA 60 | *** * TAA 0 | *** * TGA 0
TTG 180 | TCG 0 | TAG 0 | Trp W TGG 60
------------------------------------------------------------------------------
Leu L CTT 119 | Pro P CCT 90 | His H CAT 67 | Arg R CGT 182
CTC 60 | CCC 30 | CAC 53 | CGC 58
CTA 1 | CCA 30 | Gln Q CAA 61 | CGA 16
CTG 120 | CCG 30 | CAG 239 | CGG 0
------------------------------------------------------------------------------
Ile I ATT 180 | Thr T ACT 126 | Asn N AAT 270 | Ser S AGT 96
ATC 90 | ACC 84 | AAC 60 | AGC 25
ATA 60 | ACA 0 | Lys K AAA 59 | Arg R AGA 73
Met M ATG 180 | ACG 0 | AAG 301 | AGG 31
------------------------------------------------------------------------------
Val V GTT 237 | Ala A GCT 218 | Asp D GAT 218 | Gly G GGT 120
GTC 211 | GCC 21 | GAC 112 | GGC 30
GTA 173 | GCA 297 | Glu E GAA 114 | GGA 30
GTG 38 | GCG 34 | GAG 185 | GGG 60
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.16427 C:0.19761 A:0.27949 G:0.35863
position 2: T:0.29231 C:0.23077 A:0.33316 G:0.14376
position 3: T:0.42120 C:0.16308 A:0.16650 G:0.24923
Average T:0.29259 C:0.19715 A:0.25972 G:0.25054
Model 1: NearlyNeutral (2 categories)
TREE # 1: (12, 16, ((((((11, 13, 18, 21, 27, (26, 1, 6, 14, 23), 4, 30, 3, 2, 7, 19, 25, 24, 9, 29, 28), 17), 22), 10), 8), 5, 15, 20)); MP score: 35
lnL(ntime: 37 np: 40): -998.855769 +0.000000
31..12 31..16 31..32 32..33 33..34 34..35 35..36 36..37 37..11 37..13 37..18 37..21 37..27 37..38 38..26 38..1 38..6 38..14 38..23 37..4 37..30 37..3 37..2 37..7 37..19 37..25 37..24 37..9 37..29 37..28 36..17 35..22 34..10 33..8 32..5 32..15 32..20
0.000004 0.000004 0.005232 0.005334 0.010670 0.005029 0.005522 0.010154 0.000004 0.000004 0.000004 0.000004 0.000004 0.010329 0.000004 0.000004 0.000004 0.015647 0.010387 0.000004 0.000004 0.000004 0.005144 0.005141 0.000004 0.005154 0.000004 0.000004 0.000004 0.000004 0.026570 0.015819 0.021132 0.015812 0.000004 0.010543 0.000004 4.107457 0.999990 0.068312
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.183698
(12: 0.000004, 16: 0.000004, ((((((11: 0.000004, 13: 0.000004, 18: 0.000004, 21: 0.000004, 27: 0.000004, (26: 0.000004, 1: 0.000004, 6: 0.000004, 14: 0.015647, 23: 0.010387): 0.010329, 4: 0.000004, 30: 0.000004, 3: 0.000004, 2: 0.005144, 7: 0.005141, 19: 0.000004, 25: 0.005154, 24: 0.000004, 9: 0.000004, 29: 0.000004, 28: 0.000004): 0.010154, 17: 0.026570): 0.005522, 22: 0.015819): 0.005029, 10: 0.021132): 0.010670, 8: 0.015812): 0.005334, 5: 0.000004, 15: 0.010543, 20: 0.000004): 0.005232);
(C65: 0.000004, C71: 0.000004, ((((((C598: 0.000004, C287: 0.000004, C589: 0.000004, C565: 0.000004, C224: 0.000004, (C81: 0.000004, C303: 0.000004, C369: 0.000004, C27: 0.015647, C377: 0.010387): 0.010329, C543: 0.000004, C223: 0.000004, C619: 0.000004, C624: 0.005144, C117: 0.005141, C291: 0.000004, C483: 0.005154, C583: 0.000004, C559: 0.000004, C407: 0.000004, C595: 0.000004): 0.010154, C195: 0.026570): 0.005522, C207: 0.015819): 0.005029, C380: 0.021132): 0.010670, C60: 0.015812): 0.005334, C283: 0.000004, C141: 0.010543, C129: 0.000004): 0.005232);
Detailed output identifying parameters
kappa (ts/tv) = 4.10746
MLEs of dN/dS (w) for site classes (K=2)
p: 0.99999 0.00001
w: 0.06831 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
31..16 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
31..32 0.005 439.6 145.4 0.0683 0.0004 0.0058 0.2 0.8
32..33 0.005 439.6 145.4 0.0683 0.0004 0.0059 0.2 0.9
33..34 0.011 439.6 145.4 0.0683 0.0008 0.0119 0.4 1.7
34..35 0.005 439.6 145.4 0.0683 0.0004 0.0056 0.2 0.8
35..36 0.006 439.6 145.4 0.0683 0.0004 0.0061 0.2 0.9
36..37 0.010 439.6 145.4 0.0683 0.0008 0.0113 0.3 1.6
37..11 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..13 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..18 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..21 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..27 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..38 0.010 439.6 145.4 0.0683 0.0008 0.0115 0.3 1.7
38..26 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
38..1 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
38..6 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
38..14 0.016 439.6 145.4 0.0683 0.0012 0.0174 0.5 2.5
38..23 0.010 439.6 145.4 0.0683 0.0008 0.0115 0.3 1.7
37..4 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..30 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..3 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..2 0.005 439.6 145.4 0.0683 0.0004 0.0057 0.2 0.8
37..7 0.005 439.6 145.4 0.0683 0.0004 0.0057 0.2 0.8
37..19 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..25 0.005 439.6 145.4 0.0683 0.0004 0.0057 0.2 0.8
37..24 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..9 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..29 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..28 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
36..17 0.027 439.6 145.4 0.0683 0.0020 0.0295 0.9 4.3
35..22 0.016 439.6 145.4 0.0683 0.0012 0.0176 0.5 2.6
34..10 0.021 439.6 145.4 0.0683 0.0016 0.0235 0.7 3.4
33..8 0.016 439.6 145.4 0.0683 0.0012 0.0176 0.5 2.6
32..5 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
32..15 0.011 439.6 145.4 0.0683 0.0008 0.0117 0.4 1.7
32..20 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
Time used: 1:59
Model 2: PositiveSelection (3 categories)
TREE # 1: (12, 16, ((((((11, 13, 18, 21, 27, (26, 1, 6, 14, 23), 4, 30, 3, 2, 7, 19, 25, 24, 9, 29, 28), 17), 22), 10), 8), 5, 15, 20)); MP score: 35
check convergence..
lnL(ntime: 37 np: 42): -998.855595 +0.000000
31..12 31..16 31..32 32..33 33..34 34..35 35..36 36..37 37..11 37..13 37..18 37..21 37..27 37..38 38..26 38..1 38..6 38..14 38..23 37..4 37..30 37..3 37..2 37..7 37..19 37..25 37..24 37..9 37..29 37..28 36..17 35..22 34..10 33..8 32..5 32..15 32..20
0.000004 0.000004 0.005232 0.005334 0.010670 0.005029 0.005522 0.010153 0.000004 0.000004 0.000004 0.000004 0.000004 0.010329 0.000004 0.000004 0.000004 0.015647 0.010387 0.000004 0.000004 0.000004 0.005144 0.005141 0.000004 0.005154 0.000004 0.000004 0.000004 0.000004 0.026570 0.015819 0.021132 0.015812 0.000004 0.010543 0.000004 4.107423 1.000000 0.000000 0.068317 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.183698
(12: 0.000004, 16: 0.000004, ((((((11: 0.000004, 13: 0.000004, 18: 0.000004, 21: 0.000004, 27: 0.000004, (26: 0.000004, 1: 0.000004, 6: 0.000004, 14: 0.015647, 23: 0.010387): 0.010329, 4: 0.000004, 30: 0.000004, 3: 0.000004, 2: 0.005144, 7: 0.005141, 19: 0.000004, 25: 0.005154, 24: 0.000004, 9: 0.000004, 29: 0.000004, 28: 0.000004): 0.010153, 17: 0.026570): 0.005522, 22: 0.015819): 0.005029, 10: 0.021132): 0.010670, 8: 0.015812): 0.005334, 5: 0.000004, 15: 0.010543, 20: 0.000004): 0.005232);
(C65: 0.000004, C71: 0.000004, ((((((C598: 0.000004, C287: 0.000004, C589: 0.000004, C565: 0.000004, C224: 0.000004, (C81: 0.000004, C303: 0.000004, C369: 0.000004, C27: 0.015647, C377: 0.010387): 0.010329, C543: 0.000004, C223: 0.000004, C619: 0.000004, C624: 0.005144, C117: 0.005141, C291: 0.000004, C483: 0.005154, C583: 0.000004, C559: 0.000004, C407: 0.000004, C595: 0.000004): 0.010153, C195: 0.026570): 0.005522, C207: 0.015819): 0.005029, C380: 0.021132): 0.010670, C60: 0.015812): 0.005334, C283: 0.000004, C141: 0.010543, C129: 0.000004): 0.005232);
Detailed output identifying parameters
kappa (ts/tv) = 4.10742
MLEs of dN/dS (w) for site classes (K=3)
p: 1.00000 0.00000 0.00000
w: 0.06832 1.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
31..16 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
31..32 0.005 439.6 145.4 0.0683 0.0004 0.0058 0.2 0.8
32..33 0.005 439.6 145.4 0.0683 0.0004 0.0059 0.2 0.9
33..34 0.011 439.6 145.4 0.0683 0.0008 0.0119 0.4 1.7
34..35 0.005 439.6 145.4 0.0683 0.0004 0.0056 0.2 0.8
35..36 0.006 439.6 145.4 0.0683 0.0004 0.0061 0.2 0.9
36..37 0.010 439.6 145.4 0.0683 0.0008 0.0113 0.3 1.6
37..11 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..13 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..18 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..21 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..27 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..38 0.010 439.6 145.4 0.0683 0.0008 0.0115 0.3 1.7
38..26 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
38..1 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
38..6 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
38..14 0.016 439.6 145.4 0.0683 0.0012 0.0174 0.5 2.5
38..23 0.010 439.6 145.4 0.0683 0.0008 0.0115 0.3 1.7
37..4 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..30 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..3 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..2 0.005 439.6 145.4 0.0683 0.0004 0.0057 0.2 0.8
37..7 0.005 439.6 145.4 0.0683 0.0004 0.0057 0.2 0.8
37..19 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..25 0.005 439.6 145.4 0.0683 0.0004 0.0057 0.2 0.8
37..24 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..9 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..29 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
37..28 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
36..17 0.027 439.6 145.4 0.0683 0.0020 0.0295 0.9 4.3
35..22 0.016 439.6 145.4 0.0683 0.0012 0.0176 0.5 2.6
34..10 0.021 439.6 145.4 0.0683 0.0016 0.0235 0.7 3.4
33..8 0.016 439.6 145.4 0.0683 0.0012 0.0176 0.5 2.6
32..5 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
32..15 0.011 439.6 145.4 0.0683 0.0008 0.0117 0.4 1.7
32..20 0.000 439.6 145.4 0.0683 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C303)
Pr(w>1) post mean +- SE for w
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 0.982 0.018 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.635 0.191 0.073 0.035 0.021 0.014 0.010 0.008 0.007 0.006
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.021
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.030 0.948
sum of density on p0-p1 = 1.000000
Time used: 4:39
Model 7: beta (10 categories)
TREE # 1: (12, 16, ((((((11, 13, 18, 21, 27, (26, 1, 6, 14, 23), 4, 30, 3, 2, 7, 19, 25, 24, 9, 29, 28), 17), 22), 10), 8), 5, 15, 20)); MP score: 35
lnL(ntime: 37 np: 40): -998.870996 +0.000000
31..12 31..16 31..32 32..33 33..34 34..35 35..36 36..37 37..11 37..13 37..18 37..21 37..27 37..38 38..26 38..1 38..6 38..14 38..23 37..4 37..30 37..3 37..2 37..7 37..19 37..25 37..24 37..9 37..29 37..28 36..17 35..22 34..10 33..8 32..5 32..15 32..20
0.000004 0.000004 0.005232 0.005333 0.010669 0.005028 0.005521 0.010153 0.000004 0.000004 0.000004 0.000004 0.000004 0.010328 0.000004 0.000004 0.000004 0.015645 0.010386 0.000004 0.000004 0.000004 0.005144 0.005140 0.000004 0.005154 0.000004 0.000004 0.000004 0.000004 0.026567 0.015817 0.021130 0.015810 0.000004 0.010541 0.000004 4.109689 7.319205 99.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.183680
(12: 0.000004, 16: 0.000004, ((((((11: 0.000004, 13: 0.000004, 18: 0.000004, 21: 0.000004, 27: 0.000004, (26: 0.000004, 1: 0.000004, 6: 0.000004, 14: 0.015645, 23: 0.010386): 0.010328, 4: 0.000004, 30: 0.000004, 3: 0.000004, 2: 0.005144, 7: 0.005140, 19: 0.000004, 25: 0.005154, 24: 0.000004, 9: 0.000004, 29: 0.000004, 28: 0.000004): 0.010153, 17: 0.026567): 0.005521, 22: 0.015817): 0.005028, 10: 0.021130): 0.010669, 8: 0.015810): 0.005333, 5: 0.000004, 15: 0.010541, 20: 0.000004): 0.005232);
(C65: 0.000004, C71: 0.000004, ((((((C598: 0.000004, C287: 0.000004, C589: 0.000004, C565: 0.000004, C224: 0.000004, (C81: 0.000004, C303: 0.000004, C369: 0.000004, C27: 0.015645, C377: 0.010386): 0.010328, C543: 0.000004, C223: 0.000004, C619: 0.000004, C624: 0.005144, C117: 0.005140, C291: 0.000004, C483: 0.005154, C583: 0.000004, C559: 0.000004, C407: 0.000004, C595: 0.000004): 0.010153, C195: 0.026567): 0.005521, C207: 0.015817): 0.005028, C380: 0.021130): 0.010669, C60: 0.015810): 0.005333, C283: 0.000004, C141: 0.010541, C129: 0.000004): 0.005232);
Detailed output identifying parameters
kappa (ts/tv) = 4.10969
Parameters in M7 (beta):
p = 7.31921 q = 99.00000
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.03374 0.04408 0.05114 0.05727 0.06316 0.06922 0.07583 0.08364 0.09405 0.11316
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
31..16 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
31..32 0.005 439.6 145.4 0.0685 0.0004 0.0058 0.2 0.8
32..33 0.005 439.6 145.4 0.0685 0.0004 0.0059 0.2 0.9
33..34 0.011 439.6 145.4 0.0685 0.0008 0.0119 0.4 1.7
34..35 0.005 439.6 145.4 0.0685 0.0004 0.0056 0.2 0.8
35..36 0.006 439.6 145.4 0.0685 0.0004 0.0061 0.2 0.9
36..37 0.010 439.6 145.4 0.0685 0.0008 0.0113 0.3 1.6
37..11 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..13 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..18 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..21 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..27 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..38 0.010 439.6 145.4 0.0685 0.0008 0.0115 0.3 1.7
38..26 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
38..1 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
38..6 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
38..14 0.016 439.6 145.4 0.0685 0.0012 0.0174 0.5 2.5
38..23 0.010 439.6 145.4 0.0685 0.0008 0.0115 0.3 1.7
37..4 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..30 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..3 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..2 0.005 439.6 145.4 0.0685 0.0004 0.0057 0.2 0.8
37..7 0.005 439.6 145.4 0.0685 0.0004 0.0057 0.2 0.8
37..19 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..25 0.005 439.6 145.4 0.0685 0.0004 0.0057 0.2 0.8
37..24 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..9 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..29 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..28 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
36..17 0.027 439.6 145.4 0.0685 0.0020 0.0295 0.9 4.3
35..22 0.016 439.6 145.4 0.0685 0.0012 0.0176 0.5 2.6
34..10 0.021 439.6 145.4 0.0685 0.0016 0.0235 0.7 3.4
33..8 0.016 439.6 145.4 0.0685 0.0012 0.0176 0.5 2.6
32..5 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
32..15 0.011 439.6 145.4 0.0685 0.0008 0.0117 0.4 1.7
32..20 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
Time used: 21:58
Model 8: beta&w>1 (11 categories)
TREE # 1: (12, 16, ((((((11, 13, 18, 21, 27, (26, 1, 6, 14, 23), 4, 30, 3, 2, 7, 19, 25, 24, 9, 29, 28), 17), 22), 10), 8), 5, 15, 20)); MP score: 35
lnL(ntime: 37 np: 42): -998.871168 +0.000000
31..12 31..16 31..32 32..33 33..34 34..35 35..36 36..37 37..11 37..13 37..18 37..21 37..27 37..38 38..26 38..1 38..6 38..14 38..23 37..4 37..30 37..3 37..2 37..7 37..19 37..25 37..24 37..9 37..29 37..28 36..17 35..22 34..10 33..8 32..5 32..15 32..20
0.000004 0.000004 0.005232 0.005333 0.010669 0.005028 0.005521 0.010153 0.000004 0.000004 0.000004 0.000004 0.000004 0.010328 0.000004 0.000004 0.000004 0.015645 0.010386 0.000004 0.000004 0.000004 0.005144 0.005140 0.000004 0.005154 0.000004 0.000004 0.000004 0.000004 0.026567 0.015817 0.021130 0.015810 0.000004 0.010541 0.000004 4.109683 0.999990 7.318730 99.000000 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.183680
(12: 0.000004, 16: 0.000004, ((((((11: 0.000004, 13: 0.000004, 18: 0.000004, 21: 0.000004, 27: 0.000004, (26: 0.000004, 1: 0.000004, 6: 0.000004, 14: 0.015645, 23: 0.010386): 0.010328, 4: 0.000004, 30: 0.000004, 3: 0.000004, 2: 0.005144, 7: 0.005140, 19: 0.000004, 25: 0.005154, 24: 0.000004, 9: 0.000004, 29: 0.000004, 28: 0.000004): 0.010153, 17: 0.026567): 0.005521, 22: 0.015817): 0.005028, 10: 0.021130): 0.010669, 8: 0.015810): 0.005333, 5: 0.000004, 15: 0.010541, 20: 0.000004): 0.005232);
(C65: 0.000004, C71: 0.000004, ((((((C598: 0.000004, C287: 0.000004, C589: 0.000004, C565: 0.000004, C224: 0.000004, (C81: 0.000004, C303: 0.000004, C369: 0.000004, C27: 0.015645, C377: 0.010386): 0.010328, C543: 0.000004, C223: 0.000004, C619: 0.000004, C624: 0.005144, C117: 0.005140, C291: 0.000004, C483: 0.005154, C583: 0.000004, C559: 0.000004, C407: 0.000004, C595: 0.000004): 0.010153, C195: 0.026567): 0.005521, C207: 0.015817): 0.005028, C380: 0.021130): 0.010669, C60: 0.015810): 0.005333, C283: 0.000004, C141: 0.010541, C129: 0.000004): 0.005232);
Detailed output identifying parameters
kappa (ts/tv) = 4.10968
Parameters in M8 (beta&w>1):
p0 = 0.99999 p = 7.31873 q = 99.00000
(p1 = 0.00001) w = 1.00000
MLEs of dN/dS (w) for site classes (K=11)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.00001
w: 0.03373 0.04408 0.05113 0.05727 0.06316 0.06921 0.07583 0.08363 0.09404 0.11315 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
31..16 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
31..32 0.005 439.6 145.4 0.0685 0.0004 0.0058 0.2 0.8
32..33 0.005 439.6 145.4 0.0685 0.0004 0.0059 0.2 0.9
33..34 0.011 439.6 145.4 0.0685 0.0008 0.0119 0.4 1.7
34..35 0.005 439.6 145.4 0.0685 0.0004 0.0056 0.2 0.8
35..36 0.006 439.6 145.4 0.0685 0.0004 0.0061 0.2 0.9
36..37 0.010 439.6 145.4 0.0685 0.0008 0.0113 0.3 1.6
37..11 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..13 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..18 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..21 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..27 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..38 0.010 439.6 145.4 0.0685 0.0008 0.0115 0.3 1.7
38..26 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
38..1 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
38..6 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
38..14 0.016 439.6 145.4 0.0685 0.0012 0.0174 0.5 2.5
38..23 0.010 439.6 145.4 0.0685 0.0008 0.0115 0.3 1.7
37..4 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..30 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..3 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..2 0.005 439.6 145.4 0.0685 0.0004 0.0057 0.2 0.8
37..7 0.005 439.6 145.4 0.0685 0.0004 0.0057 0.2 0.8
37..19 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..25 0.005 439.6 145.4 0.0685 0.0004 0.0057 0.2 0.8
37..24 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..9 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..29 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
37..28 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
36..17 0.027 439.6 145.4 0.0685 0.0020 0.0295 0.9 4.3
35..22 0.016 439.6 145.4 0.0685 0.0012 0.0176 0.5 2.6
34..10 0.021 439.6 145.4 0.0685 0.0016 0.0235 0.7 3.4
33..8 0.016 439.6 145.4 0.0685 0.0012 0.0176 0.5 2.6
32..5 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
32..15 0.011 439.6 145.4 0.0685 0.0008 0.0117 0.4 1.7
32..20 0.000 439.6 145.4 0.0685 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C303)
Pr(w>1) post mean +- SE for w
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.999
p : 0.972 0.027 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.002 0.015 0.043 0.085 0.134 0.187 0.240 0.293
ws: 0.800 0.137 0.035 0.013 0.006 0.003 0.002 0.002 0.001 0.001
Time used: 35:30
Model 1: NearlyNeutral -998.855769 Model 2: PositiveSelection -998.855595 Model 7: beta -998.870996 Model 8: beta&w>1 -998.871168 Model 2 vs 1 .000348 Model 8 vs 7 -.000344
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
