--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -10234.43 -10247.97
2 -10234.49 -10248.59
--------------------------------------
TOTAL -10234.46 -10248.33
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.158456 0.000322 0.127022 0.195257 0.156952 1113.92 1231.36 1.000
r(A<->C){all} 0.038958 0.000248 0.012146 0.073098 0.037322 770.46 870.81 1.001
r(A<->G){all} 0.279579 0.001221 0.208966 0.344428 0.278469 702.64 784.55 1.000
r(A<->T){all} 0.045200 0.000130 0.024017 0.068328 0.044547 1073.13 1077.79 1.000
r(C<->G){all} 0.044962 0.000220 0.018997 0.075759 0.043610 841.03 899.91 1.000
r(C<->T){all} 0.534129 0.001597 0.463716 0.616886 0.534248 603.21 640.30 1.001
r(G<->T){all} 0.057172 0.000148 0.032631 0.080293 0.056525 1048.14 1101.51 1.000
pi(A){all} 0.250592 0.000029 0.240554 0.261593 0.250616 901.71 1011.59 1.000
pi(C){all} 0.168827 0.000021 0.160352 0.178360 0.168757 1093.57 1169.83 1.000
pi(G){all} 0.256898 0.000031 0.246232 0.267723 0.256937 873.80 954.89 1.002
pi(T){all} 0.323683 0.000036 0.312128 0.335154 0.323595 884.96 916.92 1.000
alpha{1,2} 0.040636 0.000766 0.000031 0.092809 0.037057 1197.69 1241.21 1.000
alpha{3} 4.542070 2.717312 1.858302 7.986196 4.260098 1456.43 1478.72 1.000
pinvar{all} 0.632882 0.001193 0.564459 0.693558 0.636113 1167.33 1260.95 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -9864.954228
Model 2: PositiveSelection -9863.401269
Model 7: beta -9864.954612
Model 8: beta&w>1 -9864.070479
Model 2 vs 1 3.105918
Model 8 vs 7 1.768266
-- Starting log on Wed Nov 02 20:11:56 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.14 sec, SCORE=1000, Nseq=7, Len=2010
C1 GKKVEFNDKPKVRKIPSTRKIKITFALDATFDSVLSKACSEFEVDKDVTL
C2 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
C3 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
C4 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
C5 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
C6 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
C7 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
**** *******:::******** **************************
C1 DELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEV
C2 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERVVDDYVYLFDEGGEEV
C3 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEV
C4 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEV
C5 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEV
C6 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEV
C7 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEV
*********************.**********:*:..**********:**
C1 IAPRMYCSFSAPDDEDCVAADVVDADENQDDDAEDSAVLVADTQEEDGVA
C2 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
C3 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
C4 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
C5 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
C6 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
C7 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
**.********* ******:*** *********:*..*************
C1 KGQVE-ADSEICVAHTGSQEELAEPDAVGSQTPIASAEETEVGEASDREG
C2 KEQVDSADSEICVAHTGGQ-EMTEHDAVGSQTPIASAEETEVGEACDREG
C3 KEQVDSADSEICVAHTGGQ-EMTEPDAVGSQTPIASAEETEVGEACDREG
C4 REQVDSADSEICVAHTGGQ-EMTEPDVVGSQTPIASAEETEVGEACDREG
C5 KEQVDSADSEICVAHTGGQ-EMTEPDAVGSQTPIASAEETEVGEACDREG
C6 KEQVDSADSEICVAHTGGQ-EMTEPDAVGSQTPIASAEETEVGEACDREG
C7 KEQVDSADSEICVAHTGGQ-EMTEPDAVGSQTPIASAEETEVGEACDREG
: **: ***********.* *::* *.******************.****
C1 IAEAKATVCADAVDACPDQVEAFEIEKVEDSILDELQTELNAPADKTYED
C2 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
C3 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
C4 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
C5 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
C6 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
C7 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
***.********:**********:*********.****************
C1 VLAFDAVCSEALSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C2 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C3 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C4 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C5 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C6 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C7 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
******: **:***************************************
C1 SLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSIILPQGGYVADFA
C2 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
C3 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
C4 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
C5 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
C6 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
C7 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
********* ***********************.****************
C1 YFFLSQCSFKAYANWRCLECDMELKLQGLDAMFFYGDVVSHMCKCGNSMT
C2 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMT
C3 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMT
C4 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAVFFYGDVVSHMCKCGNSMT
C5 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMT
C6 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMT
C7 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMT
**********.:******:*.**********:******************
C1 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVEGKQ
C2 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
C3 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
C4 LLSADIPYTFDFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
C5 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
C6 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
C7 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
*********:.***********************************:***
C1 IDGKVVTKFIGDKFDFMVGYGMTFSMSPFELAQLYGSCITPNVCFVKGDV
C2 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
C3 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
C4 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
C5 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
C6 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
C7 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
********* *********:**********:*******************
C1 IKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKAQG
C2 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
C3 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
C4 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
C5 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
C6 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
C7 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
***:* *.***********************: **.***:**:*******
C1 VCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
C2 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
C3 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
C4 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDN
C5 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
C6 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
C7 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
***** ****:********************::*****************
C1 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C2 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C3 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C4 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C5 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C6 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C7 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
**************************************************
C1 VAGTKALSLQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
C2 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
C3 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
C4 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESSFVSSYDVLQEVEALRH
C5 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
C6 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
C7 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
********:************************.****************
C1 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGGIFVS
C2 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
C3 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
C4 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
C5 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
C6 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
C7 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
********************************************* :***
C1 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C2 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C3 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C4 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C5 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C6 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C7 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
**************************************************
C1 VFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEADLVAVKDAFGF
C2 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
C3 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
C4 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
C5 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
C6 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
C7 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
************************:*********.** ***.********
C1 DEPQLLKYYTMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C2 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C3 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C4 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C5 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C6 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C7 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
******:**:****************************************
C1 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREA
C2 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREA
C3 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREA
C4 FPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREA
C5 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREA
C6 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREA
C7 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREA
******:.. ***************************** **:** ****
C1 DLSGATCNLEFVCKCGMKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCG
C2 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
C3 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
C4 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
C5 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
C6 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
C7 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
*******:***:****:*******************..**:*********
C1 SKLVHCTQFNVPFLICSNTPEGRKLPDDVVAANIFTGGSVGHYTHVKCKP
C2 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
C3 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
C4 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
C5 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
C6 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
C7 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
.*********************:***************************
C1 KYQLYDACNVNKVSEAKGNFTDCLYLKNLKQTFSSVLTTFYLDDVKCVEY
C2 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
C3 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
C4 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
C5 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
C6 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
C7 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
**********.****************************:******** *
C1 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVDGVYTNFKLVGHSIAEKLNA
C2 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
C3 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
C4 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
C5 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
C6 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
C7 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
******************************:***********.*******
C1 KLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSSGCITFGKPVVW
C2 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
C3 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
C4 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
C5 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
C6 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
C7 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
**********:***************************.**:******:*
C1 LGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDKGPVPAAVLVTG-
C2 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
C3 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
C4 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
C5 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
C6 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
C7 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
************************************: ***:******
C1 VPGADASA---GAGIAKEQKACASASVEDQVVTEVRQEPSVSAADVKEVK
C2 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVK
C3 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVK
C4 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKKSSVTTVAVKEVK
C5 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVK
C6 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVK
C7 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVK
..****** .* ********* *****:* *.::..**::. *****
C1 LNGVKKPVKVEGSVVVNDPTSETKVVKSLSIVDVYDMFLTGCKYVVWTAN
C2 LNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
C3 LNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
C4 LNGVKKPVKWNCSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
C5 LNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
C6 LNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
C7 LNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
********* : ******************************:*******
C1 ELSRLVNSPTVREYVKWGMGKIVTPAKLLLLRDEKQEFVAPKVVKAKAIA
C2 ELSRLINSPTVREYVKWGMSNLIIPANLLLLRDEKQEFVAPKVVKAKAIA
C3 ELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIA
C4 ELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIA
C5 ELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIA
C6 ELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIA
C7 ELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIA
*****:*************.::: **:***********************
C1 CYCAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C2 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C3 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C4 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C5 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C6 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C7 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
** ***********************************************
C1 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPTFVGQIVAW
C2 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
C3 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
C4 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
C5 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
C6 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
C7 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
***************************************** ********
C1 FKTTFGVSTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
C2 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
C3 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
C4 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYESINV
C5 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
C6 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
C7 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
.****** *************************************::***
C1 VQHVVDRRLSFDYISLFKLVVELVIGYSLYTVCFYPLFVLIGMQLLTTWL
C2 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
C3 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
C4 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
C5 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
C6 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
C7 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
********:*******************************:*********
C1 PEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C2 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C3 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C4 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C5 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C6 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C7 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
****** *******************************************
C1 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C2 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C3 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C4 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C5 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C6 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C7 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
**************************************************
C1 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMR
C2 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
C3 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
C4 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
C5 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
C6 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
C7 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
*************************************** **********
C1 LFYERDGQRVYDDVNASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C2 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C3 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C4 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C5 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C6 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C7 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
**************.***********************************
C1 LGAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLNVLDV
C2 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDV
C3 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDV
C4 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHLDV
C5 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDV
C6 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDV
C7 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDV
*.*************************************** *** ***
C1 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITK
C2 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
C3 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
C4 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
C5 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
C6 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
C7 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
*****************************:********************
C1 SVMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQANV
C2 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
C3 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
C4 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
C5 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
C6 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
C7 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
***:******:.***********************************:**
C1 AKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPI
C2 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
C3 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
C4 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
C5 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
C6 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
C7 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
****************************** *******************
C1 LTTPFSLKGG
C2 LTTPFSLKGG
C3 LTTPFSLKGG
C4 LTTPFSLKGG
C5 LTTPFSLKGG
C6 LTTPFSLKGG
C7 LTTPFSLKGG
**********
-- Starting log on Wed Nov 02 20:15:39 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.23 sec, SCORE=999, Nseq=7, Len=2010
C1 GKKVEFNDKPKVRKIPSTRKIKITFALDATFDSVLSKACSEFEVDKDVTL
C2 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
C3 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
C4 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
C5 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
C6 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
C7 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
**** *******:::******** **************************
C1 DELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEV
C2 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERVVDDYVYLFDEGGEEV
C3 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEV
C4 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEV
C5 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEV
C6 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEV
C7 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEV
*********************.**********:*:..**********:**
C1 IAPRMYCSFSAPDDEDCVAADVVDADENQDDDAEDSAVLVADTQEEDGVA
C2 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
C3 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
C4 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
C5 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
C6 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
C7 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
**.********* ******:*** *********:*..*************
C1 KGQVE-ADSEICVAHTGSQEELAEPDAVGSQTPIASAEETEVGEASDREG
C2 KEQVDSADSEICVAHTGGQ-EMTEHDAVGSQTPIASAEETEVGEACDREG
C3 KEQVDSADSEICVAHTGGQ-EMTEPDAVGSQTPIASAEETEVGEACDREG
C4 REQVDSADSEICVAHTGGQ-EMTEPDVVGSQTPIASAEETEVGEACDREG
C5 KEQVDSADSEICVAHTGGQ-EMTEPDAVGSQTPIASAEETEVGEACDREG
C6 KEQVDSADSEICVAHTGGQ-EMTEPDAVGSQTPIASAEETEVGEACDREG
C7 KEQVDSADSEICVAHTGGQ-EMTEPDAVGSQTPIASAEETEVGEACDREG
: **: ***********.* *::* *.******************.****
C1 IAEAKATVCADAVDACPDQVEAFEIEKVEDSILDELQTELNAPADKTYED
C2 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
C3 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
C4 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
C5 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
C6 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
C7 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
***.********:**********:*********.****************
C1 VLAFDAVCSEALSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C2 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C3 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C4 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C5 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C6 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C7 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
******: **:***************************************
C1 SLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSIILPQGGYVADFA
C2 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
C3 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
C4 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
C5 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
C6 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
C7 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
********* ***********************.****************
C1 YFFLSQCSFKAYANWRCLECDMELKLQGLDAMFFYGDVVSHMCKCGNSMT
C2 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMT
C3 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMT
C4 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAVFFYGDVVSHMCKCGNSMT
C5 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMT
C6 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMT
C7 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMT
**********.:******:*.**********:******************
C1 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVEGKQ
C2 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
C3 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
C4 LLSADIPYTFDFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
C5 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
C6 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
C7 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
*********:.***********************************:***
C1 IDGKVVTKFIGDKFDFMVGYGMTFSMSPFELAQLYGSCITPNVCFVKGDV
C2 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
C3 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
C4 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
C5 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
C6 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
C7 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
********* *********:**********:*******************
C1 IKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKAQG
C2 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
C3 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
C4 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
C5 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
C6 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
C7 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
***:* *.***********************: **.***:**:*******
C1 VCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
C2 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
C3 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
C4 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDN
C5 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
C6 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
C7 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
***** ****:********************::*****************
C1 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C2 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C3 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C4 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C5 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C6 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C7 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
**************************************************
C1 VAGTKALSLQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
C2 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
C3 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
C4 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESSFVSSYDVLQEVEALRH
C5 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
C6 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
C7 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
********:************************.****************
C1 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGGIFVS
C2 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
C3 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
C4 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
C5 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
C6 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
C7 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
********************************************* :***
C1 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C2 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C3 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C4 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C5 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C6 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C7 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
**************************************************
C1 VFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEADLVAVKDAFGF
C2 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
C3 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
C4 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
C5 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
C6 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
C7 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
************************:*********.** ***.********
C1 DEPQLLKYYTMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C2 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C3 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C4 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C5 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C6 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C7 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
******:**:****************************************
C1 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREA
C2 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREA
C3 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREA
C4 FPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREA
C5 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREA
C6 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREA
C7 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREA
******:.. ***************************** **:** ****
C1 DLSGATCNLEFVCKCGMKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCG
C2 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
C3 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
C4 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
C5 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
C6 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
C7 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
*******:***:****:*******************..**:*********
C1 SKLVHCTQFNVPFLICSNTPEGRKLPDDVVAANIFTGGSVGHYTHVKCKP
C2 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
C3 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
C4 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
C5 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
C6 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
C7 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
.*********************:***************************
C1 KYQLYDACNVNKVSEAKGNFTDCLYLKNLKQTFSSVLTTFYLDDVKCVEY
C2 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
C3 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
C4 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
C5 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
C6 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
C7 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
**********.****************************:******** *
C1 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVDGVYTNFKLVGHSIAEKLNA
C2 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
C3 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
C4 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
C5 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
C6 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
C7 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
******************************:***********.*******
C1 KLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSSGCITFGKPVVW
C2 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
C3 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
C4 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
C5 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
C6 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
C7 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
**********:***************************.**:******:*
C1 LGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDKGPVPAAVLVTG-
C2 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
C3 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
C4 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
C5 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
C6 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
C7 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
************************************: ***:******
C1 VPGADASA---GAGIAKEQKACASASVEDQVVTEVRQEPSVSAADVKEVK
C2 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVK
C3 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVK
C4 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKKSSVTTVAVKEVK
C5 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVK
C6 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVK
C7 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVK
..****** .* ********* *****:* *.::..**::. *****
C1 LNGVKKPVKVEGSVVVNDPTSETKVVKSLSIVDVYDMFLTGCKYVVWTAN
C2 LNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
C3 LNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
C4 LNGVKKPVKWNCSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
C5 LNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
C6 LNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
C7 LNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
********* : ******************************:*******
C1 ELSRLVNSPTVREYVKWGMGKIVTPAKLLLLRDEKQEFVAPKVVKAKAIA
C2 ELSRLINSPTVREYVKWGMSNLIIPANLLLLRDEKQEFVAPKVVKAKAIA
C3 ELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIA
C4 ELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIA
C5 ELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIA
C6 ELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIA
C7 ELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIA
*****:*************.::: **:***********************
C1 CYCAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C2 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C3 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C4 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C5 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C6 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C7 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
** ***********************************************
C1 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPTFVGQIVAW
C2 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
C3 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
C4 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
C5 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
C6 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
C7 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
***************************************** ********
C1 FKTTFGVSTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
C2 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
C3 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
C4 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYESINV
C5 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
C6 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
C7 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
.****** *************************************::***
C1 VQHVVDRRLSFDYISLFKLVVELVIGYSLYTVCFYPLFVLIGMQLLTTWL
C2 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
C3 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
C4 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
C5 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
C6 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
C7 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
********:*******************************:*********
C1 PEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C2 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C3 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C4 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C5 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C6 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C7 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
****** *******************************************
C1 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C2 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C3 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C4 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C5 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C6 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C7 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
**************************************************
C1 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMR
C2 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
C3 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
C4 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
C5 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
C6 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
C7 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
*************************************** **********
C1 LFYERDGQRVYDDVNASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C2 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C3 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C4 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C5 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C6 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C7 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
**************.***********************************
C1 LGAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLNVLDV
C2 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDV
C3 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDV
C4 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHLDV
C5 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDV
C6 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDV
C7 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDV
*.*************************************** *** ***
C1 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITK
C2 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
C3 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
C4 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
C5 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
C6 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
C7 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
*****************************:********************
C1 SVMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQANV
C2 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
C3 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
C4 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
C5 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
C6 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
C7 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
***:******:.***********************************:**
C1 AKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPI
C2 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
C3 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
C4 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
C5 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
C6 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
C7 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
****************************** *******************
C1 LTTPFSLKGG
C2 LTTPFSLKGG
C3 LTTPFSLKGG
C4 LTTPFSLKGG
C5 LTTPFSLKGG
C6 LTTPFSLKGG
C7 LTTPFSLKGG
**********
-- Starting log on Wed Nov 02 23:22:17 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus.result/gapped_alignment/codeml,A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 7 taxa and 6030 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C1
Taxon 2 -> C2
Taxon 3 -> C3
Taxon 4 -> C4
Taxon 5 -> C5
Taxon 6 -> C6
Taxon 7 -> C7
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1667431339
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 1923963655
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 9216024850
Seed = 970751952
Swapseed = 1667431339
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 27 unique site patterns
Division 2 has 25 unique site patterns
Division 3 has 32 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -11822.806347 -- 25.649171
Chain 2 -- -11821.815040 -- 25.649171
Chain 3 -- -11825.649561 -- 25.649171
Chain 4 -- -11822.801467 -- 25.649171
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -11807.538251 -- 25.649171
Chain 2 -- -11822.801467 -- 25.649171
Chain 3 -- -11825.589452 -- 25.649171
Chain 4 -- -11825.489814 -- 25.649171
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-11822.806] (-11821.815) (-11825.650) (-11822.801) * [-11807.538] (-11822.801) (-11825.589) (-11825.490)
1000 -- (-10388.299) (-10465.423) (-10373.555) [-10385.918] * (-10367.352) (-10405.007) (-10338.049) [-10339.016] -- 0:00:00
2000 -- (-10316.181) (-10366.272) (-10342.390) [-10311.338] * (-10298.845) (-10309.104) (-10319.162) [-10305.145] -- 0:00:00
3000 -- (-10276.360) (-10321.622) (-10311.319) [-10284.784] * (-10285.964) [-10259.387] (-10282.112) (-10276.087) -- 0:05:32
4000 -- [-10251.540] (-10291.007) (-10306.173) (-10261.109) * [-10254.276] (-10274.715) (-10266.922) (-10269.395) -- 0:04:09
5000 -- [-10249.901] (-10256.260) (-10275.517) (-10253.309) * (-10261.708) [-10254.591] (-10256.506) (-10257.198) -- 0:03:19
Average standard deviation of split frequencies: 0.070297
6000 -- [-10243.739] (-10256.516) (-10256.553) (-10250.582) * (-10253.266) (-10244.346) [-10244.454] (-10244.486) -- 0:02:45
7000 -- (-10236.580) (-10262.440) (-10257.124) [-10244.204] * (-10230.298) (-10248.297) [-10253.414] (-10243.182) -- 0:04:43
8000 -- (-10237.094) (-10256.233) [-10241.219] (-10255.934) * (-10242.622) [-10238.357] (-10237.495) (-10240.728) -- 0:04:08
9000 -- (-10239.317) [-10245.025] (-10250.089) (-10240.042) * [-10244.076] (-10241.248) (-10240.274) (-10243.379) -- 0:03:40
10000 -- (-10245.710) (-10237.352) (-10246.692) [-10242.694] * (-10244.592) (-10232.492) (-10231.396) [-10242.554] -- 0:04:57
Average standard deviation of split frequencies: 0.070101
11000 -- (-10243.842) (-10237.641) (-10247.161) [-10243.372] * (-10245.917) (-10245.284) [-10239.689] (-10247.846) -- 0:04:29
12000 -- (-10251.814) (-10237.697) (-10245.359) [-10243.544] * (-10244.309) (-10243.655) [-10235.658] (-10241.939) -- 0:04:07
13000 -- (-10233.678) (-10246.206) [-10234.972] (-10233.667) * [-10238.874] (-10242.656) (-10244.402) (-10243.580) -- 0:03:47
14000 -- (-10234.417) (-10255.183) (-10240.133) [-10238.841] * (-10246.556) [-10242.997] (-10251.054) (-10240.174) -- 0:04:41
15000 -- (-10233.650) [-10238.658] (-10236.551) (-10250.675) * [-10244.586] (-10246.941) (-10234.979) (-10243.962) -- 0:04:22
Average standard deviation of split frequencies: 0.058926
16000 -- [-10234.099] (-10240.416) (-10236.401) (-10238.552) * [-10242.501] (-10239.065) (-10242.501) (-10235.671) -- 0:04:06
17000 -- (-10238.150) [-10236.862] (-10236.068) (-10236.920) * (-10238.589) (-10235.554) [-10241.787] (-10239.655) -- 0:04:49
18000 -- [-10235.412] (-10234.208) (-10239.541) (-10236.524) * (-10239.906) (-10235.392) [-10244.322] (-10235.543) -- 0:04:32
19000 -- [-10239.702] (-10240.285) (-10259.276) (-10241.471) * (-10239.988) (-10243.217) (-10250.577) [-10234.338] -- 0:04:18
20000 -- [-10243.183] (-10238.673) (-10242.188) (-10241.316) * (-10241.308) (-10243.914) [-10242.605] (-10239.353) -- 0:04:05
Average standard deviation of split frequencies: 0.059559
21000 -- [-10241.182] (-10241.857) (-10244.244) (-10242.439) * (-10246.675) (-10238.586) (-10243.607) [-10235.731] -- 0:04:39
22000 -- (-10246.890) [-10237.002] (-10240.518) (-10241.553) * (-10251.397) (-10238.080) (-10240.898) [-10236.608] -- 0:04:26
23000 -- [-10236.318] (-10233.863) (-10247.831) (-10241.716) * (-10238.452) (-10242.963) (-10248.094) [-10236.976] -- 0:04:14
24000 -- (-10243.779) (-10234.628) [-10248.729] (-10243.268) * (-10234.659) [-10238.190] (-10249.163) (-10242.507) -- 0:04:04
25000 -- (-10244.531) (-10241.592) [-10236.586] (-10239.836) * [-10245.745] (-10239.567) (-10239.055) (-10238.734) -- 0:04:33
Average standard deviation of split frequencies: 0.041841
26000 -- (-10239.265) [-10241.460] (-10239.433) (-10240.788) * [-10245.762] (-10237.707) (-10243.442) (-10239.653) -- 0:04:22
27000 -- [-10237.380] (-10238.229) (-10241.540) (-10237.508) * (-10246.069) (-10234.812) (-10242.836) [-10235.804] -- 0:04:12
28000 -- [-10243.138] (-10246.347) (-10246.043) (-10241.164) * (-10237.900) [-10235.961] (-10253.284) (-10248.405) -- 0:04:37
29000 -- (-10254.304) (-10238.171) (-10240.288) [-10235.768] * [-10238.401] (-10239.602) (-10239.822) (-10248.713) -- 0:04:27
30000 -- (-10244.270) [-10241.577] (-10248.261) (-10242.482) * (-10239.343) (-10243.729) [-10242.450] (-10246.297) -- 0:04:18
Average standard deviation of split frequencies: 0.039528
31000 -- (-10244.646) (-10240.291) (-10244.102) [-10238.991] * (-10243.206) (-10237.470) [-10241.417] (-10247.273) -- 0:04:10
32000 -- [-10243.390] (-10236.596) (-10237.009) (-10245.091) * (-10243.467) (-10242.867) (-10245.885) [-10240.532] -- 0:04:32
33000 -- (-10236.804) [-10237.549] (-10237.714) (-10244.989) * (-10238.440) (-10239.658) (-10240.817) [-10233.374] -- 0:04:23
34000 -- (-10241.481) (-10244.821) [-10238.776] (-10249.340) * [-10240.397] (-10239.041) (-10235.791) (-10243.540) -- 0:04:15
35000 -- (-10243.941) (-10240.762) [-10244.201] (-10241.731) * (-10234.211) (-10245.063) (-10242.504) [-10233.059] -- 0:04:35
Average standard deviation of split frequencies: 0.045176
36000 -- (-10242.446) (-10245.340) [-10233.159] (-10249.033) * (-10243.256) (-10240.956) [-10239.840] (-10244.809) -- 0:04:27
37000 -- (-10243.361) (-10246.462) [-10246.757] (-10239.766) * (-10235.438) (-10251.897) [-10238.781] (-10243.165) -- 0:04:20
38000 -- (-10249.609) (-10248.083) [-10236.687] (-10241.758) * [-10236.429] (-10243.384) (-10240.435) (-10233.552) -- 0:04:13
39000 -- [-10239.885] (-10234.706) (-10236.577) (-10239.606) * (-10248.367) [-10246.958] (-10242.978) (-10245.049) -- 0:04:31
40000 -- (-10241.000) [-10247.676] (-10261.068) (-10243.438) * (-10238.201) (-10242.805) [-10243.076] (-10238.976) -- 0:04:24
Average standard deviation of split frequencies: 0.045004
41000 -- (-10233.888) (-10244.659) (-10230.947) [-10240.923] * (-10245.140) (-10244.327) (-10239.448) [-10241.534] -- 0:04:17
42000 -- (-10240.753) (-10244.863) (-10236.827) [-10239.977] * [-10238.893] (-10237.504) (-10238.122) (-10240.829) -- 0:04:10
43000 -- [-10239.469] (-10241.297) (-10240.764) (-10243.414) * [-10235.206] (-10236.491) (-10245.461) (-10236.107) -- 0:04:27
44000 -- (-10247.068) (-10243.958) [-10241.230] (-10246.310) * (-10243.086) [-10237.180] (-10243.160) (-10235.531) -- 0:04:20
45000 -- (-10236.486) (-10243.136) (-10249.997) [-10236.425] * [-10237.207] (-10246.146) (-10240.064) (-10250.495) -- 0:04:14
Average standard deviation of split frequencies: 0.039374
46000 -- [-10237.853] (-10237.968) (-10250.860) (-10240.890) * (-10234.794) [-10238.206] (-10246.060) (-10244.042) -- 0:04:29
47000 -- (-10247.352) [-10248.547] (-10246.408) (-10235.827) * (-10236.488) (-10243.189) [-10244.285] (-10237.890) -- 0:04:23
48000 -- (-10235.869) (-10238.289) [-10239.568] (-10244.216) * (-10241.989) [-10232.635] (-10248.213) (-10245.913) -- 0:04:17
49000 -- (-10252.434) (-10241.719) (-10240.317) [-10238.975] * (-10243.173) [-10244.476] (-10247.979) (-10246.339) -- 0:04:12
50000 -- (-10233.992) (-10240.080) [-10242.456] (-10242.074) * [-10238.862] (-10241.184) (-10241.113) (-10249.991) -- 0:04:26
Average standard deviation of split frequencies: 0.033385
51000 -- (-10252.261) [-10242.154] (-10243.875) (-10239.410) * (-10236.664) (-10239.544) [-10240.018] (-10243.061) -- 0:04:20
52000 -- (-10237.801) [-10237.405] (-10243.817) (-10249.368) * (-10234.014) [-10247.432] (-10243.511) (-10248.619) -- 0:04:15
53000 -- (-10236.716) [-10237.905] (-10239.482) (-10250.427) * [-10237.759] (-10238.920) (-10236.506) (-10251.179) -- 0:04:28
54000 -- (-10241.386) (-10239.341) [-10244.250] (-10244.781) * (-10236.402) (-10249.880) (-10239.844) [-10237.228] -- 0:04:22
55000 -- (-10237.232) [-10238.896] (-10242.320) (-10254.235) * [-10239.009] (-10242.669) (-10234.754) (-10233.572) -- 0:04:17
Average standard deviation of split frequencies: 0.031333
56000 -- (-10240.517) (-10239.781) (-10236.308) [-10246.593] * (-10238.243) [-10237.023] (-10233.172) (-10246.187) -- 0:04:29
57000 -- [-10237.172] (-10247.680) (-10239.691) (-10238.196) * (-10232.809) [-10236.284] (-10235.331) (-10252.026) -- 0:04:24
58000 -- (-10241.756) (-10237.118) (-10243.493) [-10240.663] * (-10237.932) (-10236.097) (-10244.930) [-10238.524] -- 0:04:19
59000 -- (-10241.241) (-10239.024) (-10239.963) [-10237.867] * (-10244.013) [-10238.113] (-10243.510) (-10243.800) -- 0:04:15
60000 -- [-10237.045] (-10236.689) (-10245.403) (-10242.666) * (-10240.750) (-10240.468) [-10240.755] (-10249.324) -- 0:04:26
Average standard deviation of split frequencies: 0.030218
61000 -- (-10247.040) [-10249.620] (-10241.647) (-10246.973) * [-10237.474] (-10240.862) (-10239.831) (-10248.274) -- 0:04:21
62000 -- [-10242.540] (-10246.759) (-10237.528) (-10240.344) * (-10244.690) (-10239.013) [-10241.126] (-10235.484) -- 0:04:17
63000 -- (-10250.714) [-10240.236] (-10242.948) (-10239.956) * [-10247.733] (-10237.418) (-10243.178) (-10235.123) -- 0:04:12
64000 -- (-10248.152) (-10238.474) [-10234.776] (-10245.600) * [-10238.216] (-10242.215) (-10242.717) (-10239.698) -- 0:04:23
65000 -- (-10239.080) [-10236.778] (-10246.132) (-10243.961) * (-10236.739) (-10239.722) (-10243.973) [-10239.508] -- 0:04:18
Average standard deviation of split frequencies: 0.026869
66000 -- (-10236.510) (-10236.577) [-10235.751] (-10247.265) * (-10242.863) (-10251.105) [-10243.844] (-10237.081) -- 0:04:14
67000 -- [-10241.700] (-10244.139) (-10235.071) (-10251.157) * (-10237.560) [-10233.043] (-10246.856) (-10241.420) -- 0:04:24
68000 -- (-10240.975) [-10239.512] (-10239.981) (-10242.703) * (-10253.484) [-10243.573] (-10237.117) (-10239.996) -- 0:04:20
69000 -- (-10249.849) [-10234.141] (-10247.525) (-10242.400) * (-10239.330) (-10243.773) (-10245.392) [-10233.806] -- 0:04:16
70000 -- [-10243.693] (-10237.459) (-10241.179) (-10242.195) * [-10237.270] (-10236.067) (-10235.085) (-10239.046) -- 0:04:12
Average standard deviation of split frequencies: 0.028503
71000 -- (-10254.922) (-10242.060) (-10241.370) [-10238.269] * [-10242.599] (-10235.703) (-10238.029) (-10240.738) -- 0:04:21
72000 -- [-10237.069] (-10243.329) (-10243.152) (-10240.484) * (-10237.541) (-10241.320) (-10240.588) [-10237.240] -- 0:04:17
73000 -- (-10238.410) (-10236.437) [-10239.683] (-10236.678) * [-10236.650] (-10239.791) (-10245.265) (-10242.291) -- 0:04:13
74000 -- (-10234.889) [-10235.198] (-10235.702) (-10242.682) * (-10245.662) [-10239.837] (-10239.683) (-10238.507) -- 0:04:10
75000 -- (-10244.908) (-10237.497) (-10240.843) [-10243.502] * (-10240.634) [-10242.709] (-10241.279) (-10243.418) -- 0:04:19
Average standard deviation of split frequencies: 0.026443
76000 -- [-10243.091] (-10236.273) (-10242.699) (-10238.486) * (-10247.102) (-10250.103) [-10246.499] (-10248.604) -- 0:04:15
77000 -- (-10238.685) (-10233.574) [-10236.409] (-10239.420) * (-10237.067) (-10243.792) [-10232.689] (-10253.498) -- 0:04:11
78000 -- (-10237.310) [-10232.904] (-10238.496) (-10248.302) * (-10245.315) (-10251.598) [-10240.588] (-10243.566) -- 0:04:08
79000 -- [-10240.734] (-10241.235) (-10236.259) (-10240.329) * (-10243.200) (-10240.542) [-10240.520] (-10241.357) -- 0:04:16
80000 -- (-10247.616) [-10238.364] (-10236.166) (-10244.659) * (-10238.583) [-10234.501] (-10242.051) (-10234.294) -- 0:04:13
Average standard deviation of split frequencies: 0.027596
81000 -- (-10248.589) (-10243.248) (-10234.479) [-10235.010] * [-10239.229] (-10238.921) (-10246.638) (-10240.698) -- 0:04:09
82000 -- (-10245.195) (-10238.876) [-10239.600] (-10234.910) * (-10244.366) [-10240.067] (-10237.563) (-10243.134) -- 0:04:17
83000 -- (-10243.667) [-10236.506] (-10233.765) (-10241.927) * (-10245.480) (-10245.954) [-10245.763] (-10236.610) -- 0:04:14
84000 -- [-10245.307] (-10240.448) (-10235.464) (-10254.023) * (-10240.822) (-10239.531) [-10245.886] (-10240.852) -- 0:04:10
85000 -- [-10237.719] (-10234.723) (-10250.954) (-10243.237) * (-10243.763) (-10239.037) [-10243.237] (-10243.303) -- 0:04:07
Average standard deviation of split frequencies: 0.029326
86000 -- (-10241.193) (-10242.742) [-10241.109] (-10246.024) * (-10243.757) (-10239.469) (-10244.729) [-10238.052] -- 0:04:15
87000 -- (-10255.775) [-10240.370] (-10244.501) (-10240.541) * (-10239.713) (-10245.004) (-10241.245) [-10244.300] -- 0:04:11
88000 -- (-10237.860) (-10241.270) [-10231.766] (-10243.204) * [-10247.267] (-10232.929) (-10234.821) (-10242.037) -- 0:04:08
89000 -- (-10238.812) [-10234.967] (-10234.173) (-10242.860) * [-10242.981] (-10238.525) (-10249.222) (-10244.596) -- 0:04:05
90000 -- (-10240.295) (-10238.163) [-10243.362] (-10237.107) * [-10237.642] (-10241.634) (-10235.826) (-10240.764) -- 0:04:12
Average standard deviation of split frequencies: 0.028856
91000 -- (-10239.059) (-10238.130) [-10240.303] (-10242.758) * (-10239.886) [-10236.602] (-10256.461) (-10242.711) -- 0:04:09
92000 -- (-10236.924) (-10239.497) [-10235.739] (-10241.706) * (-10234.121) (-10240.609) (-10240.912) [-10238.414] -- 0:04:06
93000 -- (-10233.131) (-10243.240) [-10238.399] (-10235.765) * [-10240.224] (-10241.547) (-10247.739) (-10244.793) -- 0:04:03
94000 -- (-10236.996) (-10241.738) [-10241.909] (-10239.805) * [-10234.238] (-10236.045) (-10239.830) (-10248.265) -- 0:04:10
95000 -- (-10246.350) (-10235.882) (-10239.157) [-10236.988] * (-10241.635) [-10236.884] (-10243.921) (-10242.830) -- 0:04:07
Average standard deviation of split frequencies: 0.028372
96000 -- (-10244.865) (-10249.509) (-10239.379) [-10242.954] * (-10242.389) [-10246.950] (-10244.831) (-10241.821) -- 0:04:04
97000 -- (-10236.853) [-10242.060] (-10251.685) (-10242.316) * (-10236.930) (-10242.724) [-10241.348] (-10241.288) -- 0:04:02
98000 -- (-10248.469) (-10241.532) [-10244.024] (-10237.516) * (-10251.796) (-10238.453) (-10244.605) [-10230.378] -- 0:04:08
99000 -- [-10238.643] (-10241.135) (-10242.288) (-10239.881) * (-10239.876) (-10246.461) (-10234.699) [-10235.167] -- 0:04:05
100000 -- (-10241.519) (-10237.925) [-10238.641] (-10235.589) * (-10246.594) (-10238.177) [-10238.994] (-10237.634) -- 0:04:03
Average standard deviation of split frequencies: 0.027785
101000 -- (-10244.723) (-10238.663) [-10232.433] (-10237.569) * [-10234.462] (-10241.653) (-10248.142) (-10236.900) -- 0:04:09
102000 -- (-10236.845) (-10240.069) [-10240.736] (-10241.613) * [-10238.269] (-10247.702) (-10248.804) (-10241.494) -- 0:04:06
103000 -- (-10238.088) (-10240.079) (-10244.516) [-10236.318] * (-10243.614) (-10238.730) (-10248.008) [-10245.359] -- 0:04:03
104000 -- (-10247.378) (-10234.943) [-10241.328] (-10247.923) * (-10237.370) [-10234.264] (-10248.043) (-10249.583) -- 0:04:01
105000 -- (-10238.542) [-10236.578] (-10243.587) (-10246.623) * (-10236.953) (-10238.878) (-10250.204) [-10229.641] -- 0:04:07
Average standard deviation of split frequencies: 0.024329
106000 -- (-10246.004) (-10246.986) [-10244.788] (-10255.613) * [-10236.953] (-10241.031) (-10242.080) (-10239.466) -- 0:04:04
107000 -- [-10236.813] (-10242.982) (-10240.099) (-10241.186) * (-10238.334) (-10243.663) (-10246.122) [-10232.619] -- 0:04:02
108000 -- [-10242.579] (-10245.408) (-10241.698) (-10243.977) * [-10243.399] (-10237.076) (-10244.064) (-10248.780) -- 0:03:59
109000 -- (-10244.926) [-10245.744] (-10236.038) (-10239.698) * (-10239.766) (-10236.161) (-10241.806) [-10237.353] -- 0:04:05
110000 -- (-10246.632) (-10238.916) [-10238.920] (-10238.656) * (-10246.055) [-10248.626] (-10236.081) (-10243.028) -- 0:04:02
Average standard deviation of split frequencies: 0.024138
111000 -- (-10241.615) (-10238.223) (-10241.853) [-10234.947] * (-10249.046) (-10243.148) (-10249.001) [-10241.833] -- 0:04:00
112000 -- [-10236.476] (-10246.561) (-10247.147) (-10236.847) * (-10238.851) (-10247.586) (-10247.234) [-10237.266] -- 0:03:57
113000 -- (-10243.682) (-10241.295) [-10235.587] (-10239.284) * (-10243.170) [-10239.610] (-10241.833) (-10239.396) -- 0:04:03
114000 -- [-10239.247] (-10241.723) (-10239.330) (-10239.047) * [-10234.843] (-10246.345) (-10246.867) (-10235.172) -- 0:04:00
115000 -- (-10233.960) (-10247.431) [-10240.334] (-10234.079) * (-10241.652) [-10241.760] (-10240.443) (-10254.453) -- 0:03:58
Average standard deviation of split frequencies: 0.025060
116000 -- (-10237.520) (-10234.255) (-10240.311) [-10235.908] * (-10248.156) (-10235.926) [-10238.940] (-10244.436) -- 0:04:03
117000 -- (-10238.320) (-10247.241) [-10235.195] (-10248.647) * [-10238.711] (-10243.912) (-10247.325) (-10240.171) -- 0:04:01
118000 -- (-10238.043) (-10246.201) [-10241.163] (-10236.882) * (-10237.705) (-10250.915) (-10247.572) [-10241.820] -- 0:03:59
119000 -- (-10237.763) (-10233.084) (-10244.149) [-10234.685] * (-10234.099) [-10240.005] (-10246.873) (-10247.554) -- 0:04:04
120000 -- [-10241.551] (-10237.386) (-10251.386) (-10236.570) * [-10238.193] (-10233.259) (-10243.910) (-10246.880) -- 0:04:02
Average standard deviation of split frequencies: 0.024661
121000 -- (-10242.363) (-10246.678) (-10244.645) [-10239.432] * (-10243.158) [-10233.721] (-10233.864) (-10241.354) -- 0:04:06
122000 -- (-10250.724) (-10237.590) [-10239.471] (-10236.130) * (-10243.149) (-10234.364) (-10237.697) [-10237.567] -- 0:04:04
123000 -- (-10251.489) (-10241.424) [-10244.861] (-10238.147) * (-10240.341) (-10251.508) (-10240.036) [-10234.610] -- 0:04:02
124000 -- (-10242.625) (-10241.082) [-10235.724] (-10238.789) * (-10240.196) (-10237.777) [-10245.756] (-10244.936) -- 0:04:07
125000 -- [-10242.233] (-10243.694) (-10239.574) (-10237.288) * [-10240.251] (-10244.646) (-10247.740) (-10244.753) -- 0:04:04
Average standard deviation of split frequencies: 0.023617
126000 -- [-10237.077] (-10242.001) (-10235.986) (-10240.643) * (-10239.094) (-10242.986) [-10236.311] (-10243.021) -- 0:04:02
127000 -- [-10241.846] (-10248.538) (-10244.911) (-10241.463) * (-10247.332) (-10238.237) (-10235.931) [-10237.896] -- 0:04:00
128000 -- (-10243.451) [-10243.794] (-10235.922) (-10239.820) * (-10243.754) [-10237.618] (-10232.967) (-10243.339) -- 0:04:05
129000 -- (-10255.185) (-10242.603) (-10241.119) [-10248.433] * [-10241.626] (-10242.233) (-10235.008) (-10247.783) -- 0:04:03
130000 -- (-10248.500) [-10236.153] (-10254.638) (-10240.573) * (-10239.564) (-10238.953) [-10237.548] (-10244.748) -- 0:04:00
Average standard deviation of split frequencies: 0.025254
131000 -- [-10243.978] (-10244.491) (-10250.181) (-10245.595) * [-10238.754] (-10248.645) (-10236.186) (-10241.015) -- 0:03:58
132000 -- (-10234.660) (-10238.646) [-10239.714] (-10249.505) * (-10250.034) [-10238.774] (-10237.885) (-10235.272) -- 0:04:03
133000 -- (-10249.329) (-10243.485) (-10237.150) [-10234.491] * (-10244.236) [-10236.717] (-10244.190) (-10241.202) -- 0:04:01
134000 -- (-10239.021) [-10242.336] (-10240.123) (-10239.583) * (-10241.003) (-10243.133) [-10235.430] (-10237.707) -- 0:03:59
135000 -- [-10234.336] (-10233.924) (-10238.432) (-10237.934) * [-10235.098] (-10244.121) (-10245.913) (-10249.920) -- 0:04:03
Average standard deviation of split frequencies: 0.022184
136000 -- (-10241.767) [-10241.829] (-10236.766) (-10240.078) * (-10237.903) (-10250.497) [-10230.448] (-10236.818) -- 0:04:01
137000 -- [-10243.178] (-10243.007) (-10247.886) (-10251.387) * (-10243.601) (-10246.817) (-10241.006) [-10235.782] -- 0:03:59
138000 -- (-10237.400) (-10252.001) (-10233.238) [-10235.046] * (-10234.328) (-10240.380) (-10239.962) [-10236.336] -- 0:03:57
139000 -- [-10238.145] (-10243.414) (-10247.388) (-10243.580) * (-10245.844) (-10240.640) [-10240.858] (-10245.456) -- 0:04:01
140000 -- (-10241.411) (-10240.158) (-10246.210) [-10233.252] * (-10246.357) (-10241.693) (-10235.277) [-10243.953] -- 0:03:59
Average standard deviation of split frequencies: 0.023459
141000 -- (-10242.360) (-10243.634) [-10238.980] (-10241.809) * [-10236.554] (-10238.798) (-10244.973) (-10233.571) -- 0:03:57
142000 -- (-10242.974) (-10240.268) [-10238.239] (-10241.293) * (-10258.890) [-10237.221] (-10237.747) (-10234.656) -- 0:03:55
143000 -- [-10240.495] (-10242.911) (-10234.483) (-10243.058) * (-10234.194) [-10236.097] (-10246.154) (-10246.901) -- 0:03:59
144000 -- (-10235.426) (-10238.402) (-10243.806) [-10244.180] * (-10246.387) [-10239.291] (-10235.571) (-10245.576) -- 0:03:57
145000 -- [-10237.067] (-10236.551) (-10246.086) (-10246.701) * (-10233.997) (-10240.682) [-10238.138] (-10233.853) -- 0:03:55
Average standard deviation of split frequencies: 0.021996
146000 -- (-10245.274) (-10235.969) (-10240.031) [-10245.962] * (-10242.787) (-10238.026) (-10247.088) [-10240.108] -- 0:03:53
147000 -- [-10239.696] (-10235.909) (-10235.236) (-10248.229) * (-10242.345) (-10250.214) [-10247.776] (-10240.325) -- 0:03:57
148000 -- (-10235.647) (-10247.767) [-10241.263] (-10237.345) * [-10238.633] (-10238.239) (-10247.103) (-10241.486) -- 0:03:56
149000 -- [-10234.229] (-10247.499) (-10244.131) (-10243.002) * (-10250.764) [-10233.708] (-10235.052) (-10241.565) -- 0:03:54
150000 -- [-10244.791] (-10246.679) (-10244.708) (-10242.566) * (-10249.001) (-10240.950) (-10240.882) [-10240.994] -- 0:03:57
Average standard deviation of split frequencies: 0.021510
151000 -- (-10239.098) (-10243.908) [-10237.966] (-10239.461) * (-10251.839) (-10249.495) (-10247.088) [-10246.922] -- 0:03:56
152000 -- (-10244.950) (-10236.665) (-10248.128) [-10241.348] * (-10234.312) (-10242.070) [-10236.766] (-10239.943) -- 0:03:54
153000 -- (-10240.173) (-10239.111) (-10240.620) [-10237.356] * (-10234.598) [-10239.336] (-10249.918) (-10244.618) -- 0:03:52
154000 -- (-10238.714) (-10246.380) [-10242.983] (-10244.310) * (-10245.099) (-10240.535) [-10236.146] (-10240.585) -- 0:03:56
155000 -- (-10246.842) (-10238.125) [-10236.748] (-10248.936) * (-10237.887) (-10247.319) (-10251.538) [-10235.087] -- 0:03:54
Average standard deviation of split frequencies: 0.022286
156000 -- (-10248.383) (-10243.256) [-10240.347] (-10240.023) * (-10239.159) (-10239.907) [-10235.704] (-10244.042) -- 0:03:52
157000 -- [-10240.569] (-10250.599) (-10236.467) (-10241.040) * (-10235.331) [-10238.353] (-10239.871) (-10253.223) -- 0:03:50
158000 -- (-10235.274) (-10241.613) (-10243.167) [-10234.141] * (-10243.072) [-10241.086] (-10242.874) (-10248.420) -- 0:03:54
159000 -- (-10242.484) (-10238.817) [-10240.741] (-10236.397) * [-10238.450] (-10243.800) (-10242.185) (-10242.214) -- 0:03:52
160000 -- (-10246.430) [-10239.018] (-10235.539) (-10243.053) * (-10236.377) [-10238.955] (-10242.825) (-10244.885) -- 0:03:51
Average standard deviation of split frequencies: 0.021639
161000 -- (-10249.121) (-10255.260) [-10235.139] (-10236.955) * (-10256.842) (-10239.348) [-10242.927] (-10235.817) -- 0:03:49
162000 -- (-10237.942) [-10241.805] (-10247.175) (-10247.587) * (-10243.285) (-10239.631) (-10241.558) [-10233.756] -- 0:03:52
163000 -- (-10237.771) (-10239.135) [-10236.435] (-10241.276) * (-10236.347) [-10241.631] (-10248.154) (-10235.379) -- 0:03:51
164000 -- (-10245.377) [-10233.387] (-10240.240) (-10245.675) * (-10239.352) (-10238.093) [-10235.168] (-10242.406) -- 0:03:49
165000 -- (-10240.290) (-10239.805) (-10244.832) [-10245.256] * [-10242.061] (-10239.201) (-10240.881) (-10245.729) -- 0:03:52
Average standard deviation of split frequencies: 0.021883
166000 -- [-10237.955] (-10248.195) (-10249.677) (-10247.383) * (-10233.371) (-10239.942) [-10233.380] (-10242.195) -- 0:03:51
167000 -- [-10239.612] (-10240.796) (-10242.958) (-10245.347) * (-10244.823) (-10241.467) (-10250.991) [-10240.386] -- 0:03:49
168000 -- (-10244.585) (-10240.858) (-10250.756) [-10240.862] * (-10244.447) (-10246.871) (-10242.716) [-10234.925] -- 0:03:47
169000 -- (-10243.090) (-10237.837) [-10243.115] (-10235.149) * (-10234.844) (-10232.576) [-10240.287] (-10238.745) -- 0:03:51
170000 -- (-10246.721) (-10248.082) (-10251.643) [-10238.826] * (-10242.762) (-10236.594) (-10241.534) [-10245.761] -- 0:03:49
Average standard deviation of split frequencies: 0.022615
171000 -- [-10242.400] (-10250.236) (-10240.111) (-10250.843) * (-10246.018) (-10240.489) [-10236.333] (-10235.470) -- 0:03:47
172000 -- [-10245.046] (-10242.098) (-10245.314) (-10243.033) * (-10242.765) (-10243.574) [-10241.479] (-10243.172) -- 0:03:46
173000 -- (-10234.627) (-10247.057) (-10244.152) [-10237.420] * (-10238.562) (-10254.830) [-10241.792] (-10237.470) -- 0:03:49
174000 -- (-10236.199) (-10242.191) (-10251.328) [-10241.803] * (-10247.755) [-10241.737] (-10243.381) (-10246.544) -- 0:03:47
175000 -- [-10235.631] (-10244.077) (-10240.602) (-10241.494) * (-10246.373) (-10240.443) [-10252.020] (-10243.914) -- 0:03:46
Average standard deviation of split frequencies: 0.021427
176000 -- (-10235.355) (-10243.663) [-10243.315] (-10235.996) * (-10248.796) (-10245.286) [-10240.120] (-10242.048) -- 0:03:44
177000 -- (-10249.708) (-10238.214) (-10240.118) [-10234.836] * [-10242.230] (-10240.678) (-10253.494) (-10243.239) -- 0:03:47
178000 -- (-10238.275) [-10240.651] (-10247.905) (-10241.806) * (-10249.666) [-10242.921] (-10238.396) (-10250.552) -- 0:03:46
179000 -- (-10246.363) [-10239.722] (-10238.407) (-10247.396) * [-10244.321] (-10241.785) (-10255.099) (-10244.299) -- 0:03:44
180000 -- (-10242.170) [-10251.727] (-10244.683) (-10240.616) * (-10244.027) (-10235.612) (-10245.275) [-10241.542] -- 0:03:43
Average standard deviation of split frequencies: 0.021247
181000 -- (-10237.306) (-10245.525) [-10239.270] (-10250.838) * (-10234.784) [-10239.782] (-10246.408) (-10250.757) -- 0:03:46
182000 -- (-10244.670) (-10241.466) [-10240.167] (-10241.885) * [-10238.966] (-10246.361) (-10249.708) (-10244.782) -- 0:03:44
183000 -- (-10244.404) [-10236.686] (-10240.880) (-10243.944) * (-10239.145) (-10245.443) [-10238.550] (-10245.293) -- 0:03:43
184000 -- (-10242.255) (-10244.794) [-10242.534] (-10233.283) * (-10239.491) [-10232.878] (-10237.856) (-10245.289) -- 0:03:46
185000 -- (-10238.146) (-10241.341) (-10240.286) [-10237.977] * (-10245.558) (-10245.608) (-10242.217) [-10238.550] -- 0:03:44
Average standard deviation of split frequencies: 0.019530
186000 -- (-10235.911) (-10236.309) (-10245.030) [-10235.814] * (-10241.220) [-10242.473] (-10243.110) (-10245.634) -- 0:03:43
187000 -- (-10235.401) (-10233.221) (-10238.294) [-10231.489] * (-10232.627) (-10238.746) (-10250.316) [-10240.287] -- 0:03:41
188000 -- [-10237.494] (-10246.103) (-10239.854) (-10235.273) * (-10244.985) [-10236.179] (-10238.726) (-10244.423) -- 0:03:44
189000 -- (-10238.650) (-10247.186) [-10243.352] (-10238.469) * (-10244.944) (-10237.363) (-10242.891) [-10238.027] -- 0:03:43
190000 -- (-10241.146) [-10237.626] (-10245.174) (-10233.389) * (-10242.350) [-10238.064] (-10239.135) (-10241.319) -- 0:03:41
Average standard deviation of split frequencies: 0.020797
191000 -- (-10236.671) (-10239.951) [-10241.456] (-10248.469) * [-10239.669] (-10237.442) (-10242.565) (-10239.489) -- 0:03:40
192000 -- [-10233.218] (-10237.547) (-10243.502) (-10247.385) * (-10241.034) [-10246.012] (-10240.794) (-10246.341) -- 0:03:43
193000 -- (-10239.804) (-10237.423) (-10242.212) [-10236.980] * [-10242.759] (-10242.128) (-10238.227) (-10237.089) -- 0:03:41
194000 -- (-10234.647) (-10250.900) (-10250.538) [-10241.280] * (-10243.368) [-10239.895] (-10237.507) (-10237.918) -- 0:03:40
195000 -- (-10244.089) [-10239.501] (-10237.796) (-10237.014) * (-10246.582) (-10236.702) (-10246.554) [-10240.876] -- 0:03:38
Average standard deviation of split frequencies: 0.019882
196000 -- (-10237.066) (-10250.634) (-10244.225) [-10237.638] * (-10242.118) (-10247.916) [-10245.310] (-10238.483) -- 0:03:41
197000 -- (-10236.546) (-10238.176) [-10239.676] (-10245.809) * (-10235.946) (-10252.178) (-10242.835) [-10235.953] -- 0:03:40
198000 -- (-10239.625) (-10236.374) [-10243.437] (-10238.989) * (-10236.699) (-10250.266) (-10242.616) [-10233.886] -- 0:03:38
199000 -- (-10237.841) (-10242.290) (-10236.958) [-10239.389] * (-10238.411) (-10241.714) (-10241.957) [-10235.991] -- 0:03:41
200000 -- (-10244.042) (-10238.666) (-10238.735) [-10240.652] * (-10230.424) (-10246.543) [-10242.674] (-10239.716) -- 0:03:40
Average standard deviation of split frequencies: 0.018647
201000 -- (-10241.396) [-10242.562] (-10237.726) (-10248.018) * [-10234.768] (-10237.618) (-10236.482) (-10243.573) -- 0:03:38
202000 -- (-10237.299) (-10246.168) [-10238.672] (-10240.694) * (-10238.167) [-10241.286] (-10234.996) (-10241.469) -- 0:03:37
203000 -- [-10243.058] (-10246.463) (-10247.838) (-10242.753) * (-10241.873) (-10240.210) [-10238.951] (-10254.300) -- 0:03:39
204000 -- [-10234.083] (-10240.038) (-10239.238) (-10239.225) * (-10241.048) (-10242.893) [-10245.759] (-10247.189) -- 0:03:38
205000 -- [-10238.372] (-10241.116) (-10240.879) (-10239.173) * (-10237.673) (-10238.859) [-10241.878] (-10247.899) -- 0:03:37
Average standard deviation of split frequencies: 0.018845
206000 -- [-10231.558] (-10241.940) (-10242.106) (-10240.521) * (-10243.372) [-10241.081] (-10237.709) (-10237.948) -- 0:03:39
207000 -- (-10242.501) [-10238.292] (-10242.916) (-10241.723) * (-10244.764) [-10238.146] (-10242.453) (-10237.341) -- 0:03:38
208000 -- [-10248.108] (-10236.469) (-10252.330) (-10246.217) * (-10244.208) [-10237.449] (-10239.103) (-10248.873) -- 0:03:37
209000 -- (-10246.366) (-10246.269) (-10246.045) [-10235.921] * (-10248.519) (-10243.455) (-10245.147) [-10236.701] -- 0:03:35
210000 -- (-10247.310) (-10247.388) [-10236.906] (-10240.994) * (-10242.471) (-10243.214) [-10241.894] (-10237.169) -- 0:03:38
Average standard deviation of split frequencies: 0.018880
211000 -- [-10241.616] (-10241.558) (-10238.936) (-10245.968) * [-10235.884] (-10243.436) (-10243.687) (-10245.561) -- 0:03:36
212000 -- (-10241.137) [-10237.016] (-10252.373) (-10237.849) * [-10240.041] (-10240.413) (-10238.431) (-10254.767) -- 0:03:35
213000 -- (-10240.228) [-10241.172] (-10240.380) (-10235.354) * (-10238.350) (-10241.110) (-10235.671) [-10244.581] -- 0:03:34
214000 -- (-10243.874) (-10235.429) [-10242.231] (-10240.252) * (-10244.098) [-10235.530] (-10242.412) (-10241.399) -- 0:03:36
215000 -- (-10241.159) (-10243.409) (-10240.212) [-10241.358] * (-10243.125) (-10236.444) (-10247.926) [-10243.881] -- 0:03:35
Average standard deviation of split frequencies: 0.016095
216000 -- (-10257.000) [-10238.412] (-10246.889) (-10241.253) * (-10234.235) (-10243.682) (-10249.825) [-10240.625] -- 0:03:34
217000 -- (-10236.272) [-10234.642] (-10243.586) (-10244.197) * (-10235.980) (-10239.866) (-10247.685) [-10234.877] -- 0:03:36
218000 -- (-10242.328) (-10249.130) (-10244.697) [-10236.570] * (-10239.340) [-10239.914] (-10240.512) (-10231.969) -- 0:03:35
219000 -- [-10240.321] (-10247.879) (-10238.863) (-10239.629) * (-10244.981) [-10242.175] (-10238.351) (-10254.830) -- 0:03:33
220000 -- (-10240.658) (-10245.153) [-10241.312] (-10237.797) * (-10243.731) (-10235.259) [-10240.383] (-10239.718) -- 0:03:32
Average standard deviation of split frequencies: 0.017090
221000 -- [-10248.471] (-10244.131) (-10244.068) (-10240.336) * [-10244.464] (-10238.533) (-10244.857) (-10244.292) -- 0:03:35
222000 -- (-10240.600) (-10249.918) [-10238.258] (-10235.470) * (-10235.222) (-10256.532) (-10243.861) [-10237.986] -- 0:03:33
223000 -- (-10239.545) [-10240.985] (-10241.671) (-10231.218) * (-10239.830) (-10246.574) (-10238.190) [-10242.179] -- 0:03:32
224000 -- (-10241.838) (-10236.046) [-10233.224] (-10239.835) * (-10238.250) (-10237.704) (-10244.825) [-10236.416] -- 0:03:31
225000 -- (-10235.478) (-10241.249) [-10237.484] (-10239.646) * (-10235.025) (-10236.623) [-10242.335] (-10242.298) -- 0:03:33
Average standard deviation of split frequencies: 0.015460
226000 -- [-10238.036] (-10243.796) (-10254.107) (-10246.141) * [-10234.508] (-10236.773) (-10245.552) (-10236.705) -- 0:03:32
227000 -- [-10237.439] (-10241.922) (-10249.494) (-10243.242) * (-10235.066) (-10237.231) (-10236.815) [-10239.351] -- 0:03:31
228000 -- [-10238.446] (-10244.525) (-10242.047) (-10246.746) * (-10255.540) (-10236.346) [-10237.848] (-10236.881) -- 0:03:29
229000 -- [-10238.438] (-10237.818) (-10241.260) (-10243.021) * (-10241.126) (-10247.872) (-10258.216) [-10239.956] -- 0:03:32
230000 -- (-10246.478) [-10239.075] (-10238.830) (-10248.289) * (-10242.563) (-10245.107) (-10237.215) [-10240.105] -- 0:03:30
Average standard deviation of split frequencies: 0.015072
231000 -- (-10244.419) [-10234.245] (-10242.823) (-10253.323) * [-10242.532] (-10235.187) (-10241.479) (-10244.050) -- 0:03:29
232000 -- (-10242.902) (-10246.052) [-10236.415] (-10240.641) * [-10247.062] (-10241.494) (-10238.731) (-10247.787) -- 0:03:31
233000 -- (-10238.031) (-10236.570) (-10237.358) [-10235.171] * (-10248.331) (-10241.220) (-10240.431) [-10238.576] -- 0:03:30
234000 -- [-10236.495] (-10243.960) (-10248.332) (-10241.478) * (-10236.531) (-10249.372) [-10235.652] (-10237.480) -- 0:03:29
235000 -- (-10242.676) (-10241.054) [-10235.207] (-10242.018) * (-10236.943) [-10239.039] (-10244.650) (-10241.748) -- 0:03:28
Average standard deviation of split frequencies: 0.015480
236000 -- (-10231.772) [-10238.402] (-10236.175) (-10246.716) * (-10243.589) (-10254.922) (-10229.964) [-10238.760] -- 0:03:30
237000 -- [-10239.351] (-10251.192) (-10236.676) (-10237.338) * (-10237.926) (-10244.729) (-10243.137) [-10236.791] -- 0:03:29
238000 -- (-10233.424) [-10239.524] (-10240.300) (-10245.741) * [-10233.985] (-10248.005) (-10250.864) (-10233.098) -- 0:03:28
239000 -- [-10239.601] (-10243.588) (-10235.192) (-10237.200) * (-10248.170) (-10237.730) (-10243.307) [-10231.631] -- 0:03:26
240000 -- (-10234.692) (-10240.843) [-10233.280] (-10234.745) * [-10243.063] (-10250.656) (-10234.676) (-10244.593) -- 0:03:29
Average standard deviation of split frequencies: 0.015915
241000 -- [-10243.407] (-10246.787) (-10242.039) (-10228.207) * [-10240.274] (-10248.605) (-10241.520) (-10249.570) -- 0:03:27
242000 -- (-10236.606) [-10242.006] (-10235.512) (-10236.977) * (-10235.999) (-10249.978) [-10245.538] (-10243.100) -- 0:03:26
243000 -- (-10238.536) (-10247.733) (-10244.686) [-10237.527] * (-10242.012) (-10243.265) [-10242.660] (-10239.884) -- 0:03:28
244000 -- [-10238.756] (-10242.701) (-10239.645) (-10233.643) * (-10241.474) (-10258.310) (-10236.997) [-10247.032] -- 0:03:27
245000 -- (-10246.974) (-10241.430) (-10239.945) [-10245.393] * (-10240.194) (-10245.298) [-10243.825] (-10248.255) -- 0:03:26
Average standard deviation of split frequencies: 0.016528
246000 -- (-10246.796) (-10234.220) [-10243.480] (-10245.790) * (-10244.764) [-10241.526] (-10239.661) (-10236.705) -- 0:03:25
247000 -- (-10238.491) [-10248.626] (-10242.889) (-10251.537) * (-10237.547) (-10243.246) (-10242.369) [-10243.069] -- 0:03:27
248000 -- [-10241.480] (-10239.459) (-10238.097) (-10244.178) * (-10240.627) (-10245.971) [-10242.377] (-10240.112) -- 0:03:26
249000 -- (-10239.924) (-10244.136) (-10246.509) [-10237.760] * (-10252.556) [-10240.623] (-10247.611) (-10240.130) -- 0:03:25
250000 -- (-10235.430) [-10237.265] (-10242.742) (-10243.420) * (-10238.516) (-10242.151) [-10235.536] (-10239.891) -- 0:03:27
Average standard deviation of split frequencies: 0.016690
251000 -- (-10235.595) [-10250.012] (-10248.222) (-10238.706) * (-10240.336) [-10235.654] (-10236.892) (-10246.748) -- 0:03:25
252000 -- (-10247.975) (-10250.647) (-10237.504) [-10241.260] * (-10242.541) (-10241.185) (-10237.129) [-10251.467] -- 0:03:24
253000 -- [-10234.523] (-10246.739) (-10240.655) (-10242.409) * (-10242.207) [-10239.762] (-10244.767) (-10244.474) -- 0:03:23
254000 -- (-10235.012) [-10244.821] (-10246.469) (-10245.677) * (-10242.695) (-10245.248) [-10244.379] (-10239.013) -- 0:03:25
255000 -- (-10242.314) (-10253.541) [-10247.516] (-10243.096) * (-10236.018) (-10239.860) (-10236.227) [-10240.426] -- 0:03:24
Average standard deviation of split frequencies: 0.017033
256000 -- (-10240.825) (-10256.903) [-10247.950] (-10240.985) * [-10235.033] (-10237.142) (-10250.140) (-10243.433) -- 0:03:23
257000 -- [-10237.520] (-10247.838) (-10248.896) (-10238.955) * (-10248.774) [-10239.112] (-10237.843) (-10246.315) -- 0:03:22
258000 -- (-10241.948) (-10238.301) (-10250.709) [-10239.489] * (-10244.397) (-10244.492) [-10240.237] (-10245.584) -- 0:03:24
259000 -- (-10235.355) (-10232.528) (-10243.292) [-10239.703] * (-10242.530) [-10240.915] (-10244.314) (-10248.787) -- 0:03:23
260000 -- [-10237.844] (-10241.340) (-10241.394) (-10239.507) * [-10235.818] (-10238.000) (-10255.172) (-10242.523) -- 0:03:22
Average standard deviation of split frequencies: 0.016999
261000 -- [-10243.588] (-10240.866) (-10243.498) (-10237.344) * (-10239.174) [-10238.169] (-10254.445) (-10235.270) -- 0:03:21
262000 -- (-10244.987) (-10248.259) (-10236.051) [-10237.394] * [-10231.237] (-10235.327) (-10239.211) (-10247.553) -- 0:03:22
263000 -- (-10246.952) (-10253.052) [-10234.364] (-10247.520) * (-10236.341) (-10240.985) [-10241.401] (-10239.195) -- 0:03:21
264000 -- (-10247.477) [-10241.578] (-10241.283) (-10240.745) * (-10244.169) [-10243.886] (-10251.575) (-10244.283) -- 0:03:20
265000 -- [-10241.810] (-10247.809) (-10244.691) (-10237.613) * (-10239.619) (-10238.720) [-10244.433] (-10233.797) -- 0:03:22
Average standard deviation of split frequencies: 0.017833
266000 -- (-10246.209) (-10243.749) (-10251.775) [-10247.794] * (-10242.537) [-10240.734] (-10244.204) (-10234.681) -- 0:03:21
267000 -- [-10233.096] (-10242.236) (-10250.800) (-10244.382) * [-10236.142] (-10239.705) (-10237.004) (-10244.346) -- 0:03:20
268000 -- [-10245.686] (-10247.888) (-10244.746) (-10246.643) * (-10246.414) (-10246.571) (-10245.399) [-10234.883] -- 0:03:19
269000 -- [-10246.567] (-10241.360) (-10248.045) (-10236.354) * (-10235.633) (-10247.965) (-10240.650) [-10236.784] -- 0:03:21
270000 -- [-10237.839] (-10249.018) (-10243.655) (-10239.321) * [-10237.920] (-10243.778) (-10249.066) (-10241.870) -- 0:03:20
Average standard deviation of split frequencies: 0.016836
271000 -- (-10246.762) (-10253.718) [-10239.503] (-10237.249) * [-10233.778] (-10248.372) (-10243.172) (-10238.124) -- 0:03:19
272000 -- [-10242.665] (-10245.639) (-10241.757) (-10233.722) * [-10238.710] (-10239.417) (-10245.929) (-10245.336) -- 0:03:18
273000 -- (-10240.149) (-10246.757) [-10234.668] (-10232.712) * (-10240.729) [-10239.172] (-10239.111) (-10244.995) -- 0:03:19
274000 -- (-10237.997) [-10239.291] (-10244.192) (-10243.803) * [-10238.059] (-10265.281) (-10247.337) (-10235.678) -- 0:03:18
275000 -- (-10245.124) (-10243.998) [-10236.248] (-10242.864) * (-10242.851) [-10248.464] (-10244.131) (-10238.879) -- 0:03:17
Average standard deviation of split frequencies: 0.016226
276000 -- [-10243.605] (-10238.806) (-10247.753) (-10235.222) * (-10242.981) [-10247.940] (-10258.913) (-10239.983) -- 0:03:16
277000 -- [-10232.905] (-10235.939) (-10237.193) (-10240.827) * [-10244.127] (-10247.759) (-10246.884) (-10241.085) -- 0:03:18
278000 -- [-10240.841] (-10244.922) (-10242.679) (-10246.713) * (-10238.303) (-10241.504) (-10236.534) [-10235.021] -- 0:03:17
279000 -- [-10236.377] (-10240.396) (-10242.685) (-10241.264) * (-10241.332) (-10247.154) [-10235.946] (-10235.450) -- 0:03:16
280000 -- (-10250.697) [-10237.248] (-10248.506) (-10239.760) * [-10238.674] (-10241.192) (-10240.013) (-10238.118) -- 0:03:18
Average standard deviation of split frequencies: 0.017111
281000 -- (-10242.477) [-10239.767] (-10247.327) (-10236.605) * (-10235.890) (-10235.796) [-10240.001] (-10237.684) -- 0:03:17
282000 -- (-10231.860) [-10239.002] (-10246.156) (-10242.585) * (-10244.994) (-10240.486) (-10248.920) [-10239.033] -- 0:03:16
283000 -- (-10240.174) [-10238.718] (-10244.788) (-10237.559) * (-10239.880) (-10233.754) [-10238.409] (-10235.989) -- 0:03:15
284000 -- (-10235.004) [-10240.292] (-10245.055) (-10241.729) * (-10247.446) (-10237.677) (-10248.499) [-10240.644] -- 0:03:16
285000 -- [-10242.705] (-10243.013) (-10251.642) (-10246.633) * (-10242.626) [-10238.200] (-10238.239) (-10236.883) -- 0:03:15
Average standard deviation of split frequencies: 0.018131
286000 -- [-10234.990] (-10250.970) (-10243.230) (-10242.040) * (-10238.239) (-10237.990) (-10236.917) [-10247.486] -- 0:03:14
287000 -- [-10233.129] (-10243.099) (-10243.119) (-10245.196) * (-10235.098) (-10243.135) [-10239.879] (-10244.619) -- 0:03:13
288000 -- (-10246.061) (-10249.989) (-10240.232) [-10239.024] * (-10242.451) (-10244.535) [-10236.027] (-10240.232) -- 0:03:15
289000 -- (-10243.287) [-10243.076] (-10237.699) (-10249.799) * [-10241.416] (-10242.077) (-10249.482) (-10243.203) -- 0:03:14
290000 -- [-10238.976] (-10239.477) (-10246.575) (-10249.310) * (-10247.456) [-10234.357] (-10239.479) (-10237.881) -- 0:03:13
Average standard deviation of split frequencies: 0.018126
291000 -- (-10248.411) (-10248.092) [-10246.591] (-10233.705) * (-10241.871) (-10241.046) (-10237.354) [-10239.108] -- 0:03:14
292000 -- (-10247.911) [-10239.537] (-10241.533) (-10235.150) * (-10239.203) [-10243.654] (-10239.091) (-10240.700) -- 0:03:13
293000 -- (-10247.462) (-10242.070) (-10239.345) [-10236.267] * [-10241.642] (-10240.801) (-10239.260) (-10237.091) -- 0:03:13
294000 -- (-10246.220) [-10238.380] (-10244.939) (-10235.612) * (-10244.085) (-10237.846) [-10236.537] (-10241.731) -- 0:03:12
295000 -- (-10236.409) (-10251.348) (-10237.927) [-10242.796] * (-10242.088) [-10234.847] (-10239.988) (-10238.640) -- 0:03:13
Average standard deviation of split frequencies: 0.017021
296000 -- (-10243.453) [-10235.521] (-10243.465) (-10237.546) * (-10242.361) (-10246.022) (-10243.613) [-10241.818] -- 0:03:12
297000 -- (-10236.821) (-10242.490) (-10246.085) [-10240.392] * [-10246.965] (-10238.577) (-10238.256) (-10242.235) -- 0:03:11
298000 -- (-10234.295) (-10240.825) (-10256.319) [-10246.946] * (-10247.094) (-10236.193) [-10248.526] (-10243.555) -- 0:03:10
299000 -- (-10235.820) (-10241.194) (-10238.424) [-10234.636] * (-10244.016) [-10242.176] (-10242.073) (-10246.642) -- 0:03:12
300000 -- [-10245.664] (-10252.553) (-10245.088) (-10235.674) * [-10245.510] (-10244.764) (-10251.095) (-10254.167) -- 0:03:11
Average standard deviation of split frequencies: 0.016970
301000 -- (-10238.350) (-10250.582) (-10237.250) [-10237.136] * (-10247.891) (-10245.438) [-10242.341] (-10238.363) -- 0:03:10
302000 -- [-10240.133] (-10243.614) (-10238.971) (-10246.153) * [-10243.932] (-10232.958) (-10237.175) (-10240.579) -- 0:03:09
303000 -- (-10242.859) [-10246.341] (-10241.619) (-10242.023) * [-10239.879] (-10238.746) (-10241.288) (-10241.384) -- 0:03:10
304000 -- (-10241.067) (-10244.676) [-10242.406] (-10247.252) * (-10237.670) (-10236.380) (-10245.371) [-10242.339] -- 0:03:10
305000 -- (-10251.661) (-10246.470) [-10245.001] (-10233.478) * [-10240.978] (-10245.266) (-10246.180) (-10241.901) -- 0:03:09
Average standard deviation of split frequencies: 0.016784
306000 -- (-10246.020) [-10241.202] (-10232.587) (-10243.389) * [-10240.364] (-10239.909) (-10238.791) (-10241.489) -- 0:03:08
307000 -- (-10243.550) [-10241.110] (-10237.457) (-10241.462) * (-10243.859) [-10235.483] (-10246.061) (-10238.728) -- 0:03:09
308000 -- (-10235.818) (-10235.801) (-10244.130) [-10238.401] * (-10244.459) (-10235.159) [-10238.418] (-10229.783) -- 0:03:08
309000 -- (-10237.454) (-10247.868) [-10242.728] (-10241.603) * [-10249.636] (-10234.851) (-10242.595) (-10238.400) -- 0:03:07
310000 -- (-10237.602) [-10234.683] (-10248.937) (-10241.427) * (-10234.126) [-10241.325] (-10243.066) (-10240.658) -- 0:03:09
Average standard deviation of split frequencies: 0.016452
311000 -- (-10240.728) (-10248.345) (-10247.986) [-10244.247] * (-10236.142) (-10240.825) (-10237.547) [-10236.775] -- 0:03:08
312000 -- (-10234.062) (-10240.702) [-10244.754] (-10240.522) * (-10241.195) (-10242.180) [-10236.730] (-10237.336) -- 0:03:07
313000 -- (-10252.457) (-10235.561) [-10238.208] (-10242.863) * (-10244.055) [-10239.192] (-10243.273) (-10240.447) -- 0:03:06
314000 -- (-10241.312) (-10236.765) (-10246.642) [-10236.761] * (-10233.903) (-10238.461) (-10245.097) [-10233.712] -- 0:03:07
315000 -- (-10252.241) [-10234.751] (-10236.123) (-10244.131) * (-10245.848) (-10233.229) [-10237.638] (-10237.651) -- 0:03:07
Average standard deviation of split frequencies: 0.015249
316000 -- (-10234.156) [-10239.715] (-10237.477) (-10244.964) * [-10242.084] (-10250.038) (-10241.338) (-10247.827) -- 0:03:06
317000 -- (-10249.247) (-10238.035) (-10241.960) [-10248.476] * (-10241.767) (-10243.633) [-10242.997] (-10241.717) -- 0:03:05
318000 -- [-10235.569] (-10235.458) (-10235.382) (-10244.183) * (-10245.809) (-10237.598) (-10245.653) [-10239.067] -- 0:03:06
319000 -- [-10238.449] (-10241.631) (-10239.378) (-10238.319) * (-10246.347) (-10242.396) (-10242.924) [-10245.050] -- 0:03:05
320000 -- (-10244.243) (-10239.344) [-10242.728] (-10243.715) * (-10243.855) [-10233.634] (-10234.565) (-10241.400) -- 0:03:04
Average standard deviation of split frequencies: 0.014960
321000 -- (-10234.720) (-10245.193) [-10239.227] (-10234.859) * (-10239.346) [-10237.371] (-10241.265) (-10251.757) -- 0:03:04
322000 -- (-10239.165) (-10251.305) [-10238.695] (-10241.658) * [-10234.174] (-10244.621) (-10237.554) (-10245.224) -- 0:03:05
323000 -- (-10248.048) (-10252.652) [-10242.586] (-10239.470) * (-10249.669) (-10241.262) [-10242.538] (-10247.043) -- 0:03:04
324000 -- (-10242.133) (-10237.908) (-10238.725) [-10242.232] * (-10241.634) (-10252.462) (-10237.597) [-10237.798] -- 0:03:03
325000 -- (-10242.506) [-10238.931] (-10246.910) (-10238.079) * (-10238.034) (-10240.116) (-10236.841) [-10235.999] -- 0:03:04
Average standard deviation of split frequencies: 0.015226
326000 -- (-10246.045) (-10240.572) [-10235.015] (-10245.101) * [-10242.919] (-10234.333) (-10249.824) (-10239.161) -- 0:03:04
327000 -- [-10244.716] (-10241.623) (-10247.047) (-10245.246) * (-10246.956) (-10238.600) [-10238.098] (-10248.218) -- 0:03:03
328000 -- (-10236.332) (-10241.871) (-10242.762) [-10235.681] * (-10237.381) (-10236.002) (-10234.588) [-10243.543] -- 0:03:02
329000 -- [-10234.007] (-10235.938) (-10237.118) (-10237.881) * (-10242.600) (-10239.899) (-10237.786) [-10244.491] -- 0:03:03
330000 -- (-10237.398) [-10244.696] (-10238.789) (-10245.696) * (-10244.054) (-10236.469) (-10250.247) [-10235.931] -- 0:03:02
Average standard deviation of split frequencies: 0.014927
331000 -- (-10237.914) [-10242.845] (-10246.484) (-10247.551) * (-10237.939) (-10236.675) [-10239.511] (-10239.778) -- 0:03:01
332000 -- [-10231.228] (-10240.096) (-10242.772) (-10252.429) * (-10248.910) [-10249.316] (-10241.059) (-10246.118) -- 0:03:01
333000 -- (-10243.499) [-10239.709] (-10239.117) (-10234.232) * [-10238.613] (-10238.599) (-10240.808) (-10234.259) -- 0:03:02
334000 -- (-10235.985) (-10238.904) [-10239.998] (-10234.152) * (-10235.356) (-10240.668) (-10236.877) [-10236.259] -- 0:03:01
335000 -- (-10245.186) (-10245.778) [-10237.118] (-10243.255) * [-10237.370] (-10248.483) (-10236.507) (-10236.521) -- 0:03:00
Average standard deviation of split frequencies: 0.014938
336000 -- (-10238.151) [-10230.607] (-10240.030) (-10236.813) * (-10236.176) (-10241.712) [-10233.654] (-10237.098) -- 0:03:01
337000 -- (-10239.262) (-10238.462) (-10244.097) [-10238.635] * [-10230.493] (-10234.815) (-10236.214) (-10238.359) -- 0:03:00
338000 -- (-10233.960) (-10241.248) (-10240.170) [-10243.925] * [-10237.846] (-10248.944) (-10248.064) (-10248.642) -- 0:03:00
339000 -- (-10245.667) [-10237.248] (-10249.924) (-10250.856) * (-10242.264) (-10237.788) (-10247.363) [-10245.418] -- 0:02:59
340000 -- [-10241.512] (-10241.833) (-10237.456) (-10245.534) * (-10242.907) [-10240.470] (-10250.967) (-10261.390) -- 0:03:00
Average standard deviation of split frequencies: 0.014001
341000 -- (-10238.679) (-10235.413) (-10246.268) [-10245.206] * (-10236.014) (-10240.630) [-10231.458] (-10245.875) -- 0:02:59
342000 -- (-10246.348) (-10232.741) [-10240.597] (-10235.122) * (-10245.725) (-10248.609) (-10241.492) [-10243.855] -- 0:02:58
343000 -- [-10241.599] (-10242.322) (-10244.239) (-10248.619) * (-10237.590) (-10241.370) (-10243.377) [-10240.358] -- 0:02:58
344000 -- [-10238.417] (-10253.617) (-10244.684) (-10240.665) * [-10244.099] (-10242.890) (-10239.339) (-10235.432) -- 0:02:59
345000 -- (-10243.860) (-10248.476) (-10246.047) [-10241.535] * (-10240.531) (-10241.673) (-10238.665) [-10238.382] -- 0:02:58
Average standard deviation of split frequencies: 0.013464
346000 -- [-10235.210] (-10247.359) (-10247.757) (-10236.185) * (-10235.590) [-10235.847] (-10241.353) (-10241.100) -- 0:02:57
347000 -- (-10235.068) (-10244.279) [-10246.411] (-10238.287) * (-10242.062) (-10244.194) [-10239.300] (-10242.836) -- 0:02:56
348000 -- (-10235.489) (-10237.978) (-10239.498) [-10236.413] * (-10238.036) (-10252.595) [-10241.274] (-10234.924) -- 0:02:57
349000 -- (-10245.483) (-10238.878) (-10240.632) [-10245.872] * (-10236.437) (-10245.978) (-10249.063) [-10237.243] -- 0:02:57
350000 -- (-10239.406) (-10243.283) [-10244.193] (-10245.313) * (-10234.027) (-10246.680) [-10241.548] (-10245.191) -- 0:02:56
Average standard deviation of split frequencies: 0.013206
351000 -- (-10243.399) [-10239.024] (-10238.249) (-10240.608) * (-10240.645) [-10239.229] (-10248.489) (-10246.458) -- 0:02:57
352000 -- (-10241.477) (-10245.564) (-10235.578) [-10236.133] * (-10245.242) (-10246.313) (-10245.396) [-10241.941] -- 0:02:56
353000 -- (-10242.778) (-10238.216) (-10250.784) [-10245.469] * (-10238.749) (-10240.989) [-10241.215] (-10241.852) -- 0:02:55
354000 -- (-10240.728) [-10233.803] (-10243.147) (-10248.819) * (-10238.692) [-10234.949] (-10246.032) (-10251.118) -- 0:02:55
355000 -- (-10242.971) [-10232.254] (-10246.734) (-10231.751) * (-10230.826) (-10234.730) (-10236.942) [-10244.331] -- 0:02:56
Average standard deviation of split frequencies: 0.013738
356000 -- (-10235.885) (-10239.640) (-10242.815) [-10235.916] * (-10243.143) (-10238.852) (-10239.298) [-10244.296] -- 0:02:55
357000 -- [-10241.154] (-10243.151) (-10236.628) (-10239.953) * (-10252.953) [-10244.800] (-10242.264) (-10234.273) -- 0:02:54
358000 -- (-10242.877) (-10236.985) [-10234.986] (-10248.108) * (-10249.299) (-10242.358) (-10234.277) [-10235.360] -- 0:02:53
359000 -- (-10246.103) (-10239.976) (-10238.263) [-10234.917] * (-10240.698) (-10244.225) (-10243.944) [-10237.995] -- 0:02:54
360000 -- (-10238.461) (-10237.533) [-10239.334] (-10239.950) * (-10239.363) (-10240.073) (-10242.407) [-10239.616] -- 0:02:54
Average standard deviation of split frequencies: 0.013969
361000 -- [-10239.777] (-10239.176) (-10240.670) (-10245.864) * [-10241.148] (-10241.505) (-10238.344) (-10247.683) -- 0:02:53
362000 -- (-10240.088) (-10240.345) [-10236.185] (-10244.188) * (-10240.883) [-10237.762] (-10239.946) (-10239.410) -- 0:02:52
363000 -- (-10248.496) (-10236.469) [-10235.877] (-10240.508) * (-10260.469) (-10241.582) (-10243.247) [-10239.534] -- 0:02:53
364000 -- [-10244.707] (-10233.802) (-10240.125) (-10242.196) * (-10239.629) (-10237.212) [-10240.638] (-10244.883) -- 0:02:52
365000 -- (-10241.031) [-10237.319] (-10241.121) (-10247.394) * [-10236.629] (-10233.530) (-10237.714) (-10253.914) -- 0:02:52
Average standard deviation of split frequencies: 0.013595
366000 -- (-10240.967) [-10242.005] (-10245.590) (-10245.682) * (-10242.937) [-10239.207] (-10241.472) (-10241.678) -- 0:02:51
367000 -- (-10246.649) (-10241.898) [-10236.203] (-10245.254) * [-10235.300] (-10236.346) (-10242.796) (-10247.218) -- 0:02:52
368000 -- (-10256.574) [-10237.399] (-10244.340) (-10239.054) * (-10246.668) [-10234.630] (-10244.825) (-10241.607) -- 0:02:51
369000 -- (-10241.116) (-10239.450) [-10237.095] (-10237.313) * (-10235.272) (-10241.661) (-10240.565) [-10234.529] -- 0:02:51
370000 -- (-10236.630) (-10237.411) (-10238.713) [-10251.474] * (-10237.671) (-10244.449) (-10237.000) [-10237.626] -- 0:02:51
Average standard deviation of split frequencies: 0.013831
371000 -- (-10241.437) (-10243.030) [-10235.170] (-10242.187) * (-10237.860) (-10244.550) (-10252.716) [-10241.540] -- 0:02:51
372000 -- (-10241.814) (-10236.420) (-10244.584) [-10234.415] * (-10245.811) (-10248.422) (-10246.324) [-10248.622] -- 0:02:50
373000 -- [-10240.929] (-10246.926) (-10235.382) (-10237.538) * [-10240.987] (-10245.450) (-10247.848) (-10239.785) -- 0:02:49
374000 -- (-10244.905) (-10248.664) (-10243.134) [-10236.101] * (-10246.280) (-10251.460) [-10233.188] (-10233.222) -- 0:02:50
375000 -- (-10245.582) (-10244.701) (-10239.302) [-10234.309] * (-10240.635) (-10240.574) [-10241.822] (-10238.453) -- 0:02:50
Average standard deviation of split frequencies: 0.013791
376000 -- (-10236.151) [-10239.848] (-10239.402) (-10237.063) * (-10243.930) (-10245.079) (-10240.405) [-10238.405] -- 0:02:49
377000 -- (-10246.143) [-10243.187] (-10242.299) (-10236.920) * (-10236.150) [-10237.254] (-10239.573) (-10238.109) -- 0:02:48
378000 -- (-10235.820) [-10234.673] (-10245.362) (-10244.015) * (-10245.397) [-10236.520] (-10241.467) (-10236.487) -- 0:02:49
379000 -- (-10242.508) (-10242.525) [-10236.629] (-10237.616) * [-10245.526] (-10255.854) (-10239.111) (-10239.916) -- 0:02:48
380000 -- (-10240.838) (-10246.882) (-10240.385) [-10237.107] * (-10239.889) (-10242.372) (-10237.069) [-10240.693] -- 0:02:48
Average standard deviation of split frequencies: 0.013374
381000 -- (-10237.154) (-10238.504) [-10240.293] (-10236.364) * (-10246.287) [-10240.042] (-10244.281) (-10240.999) -- 0:02:47
382000 -- (-10235.161) (-10236.654) (-10238.993) [-10233.864] * [-10236.824] (-10244.736) (-10246.429) (-10234.841) -- 0:02:48
383000 -- [-10241.506] (-10243.267) (-10243.940) (-10251.906) * (-10244.851) (-10242.958) [-10241.781] (-10245.275) -- 0:02:47
384000 -- (-10243.372) [-10232.067] (-10260.708) (-10235.217) * (-10233.649) [-10237.071] (-10241.478) (-10252.596) -- 0:02:46
385000 -- [-10245.700] (-10239.824) (-10244.696) (-10238.208) * (-10240.344) [-10234.367] (-10240.945) (-10237.894) -- 0:02:47
Average standard deviation of split frequencies: 0.012289
386000 -- (-10247.953) [-10240.753] (-10245.756) (-10236.614) * (-10243.546) (-10240.862) [-10233.709] (-10247.430) -- 0:02:47
387000 -- [-10239.584] (-10239.506) (-10244.111) (-10238.960) * (-10250.296) [-10239.207] (-10238.756) (-10236.253) -- 0:02:46
388000 -- (-10239.653) (-10250.450) [-10243.802] (-10242.825) * (-10236.661) (-10242.457) (-10236.555) [-10235.205] -- 0:02:45
389000 -- (-10242.360) (-10247.311) (-10237.429) [-10245.267] * (-10244.729) (-10243.889) [-10237.014] (-10239.508) -- 0:02:46
390000 -- [-10236.420] (-10235.125) (-10243.209) (-10248.119) * (-10249.532) [-10240.943] (-10236.092) (-10242.936) -- 0:02:45
Average standard deviation of split frequencies: 0.012067
391000 -- (-10232.141) [-10235.237] (-10243.342) (-10252.917) * [-10246.280] (-10242.181) (-10253.823) (-10252.272) -- 0:02:45
392000 -- (-10239.638) (-10243.170) [-10244.328] (-10252.060) * [-10243.027] (-10237.798) (-10247.000) (-10245.471) -- 0:02:44
393000 -- (-10236.191) [-10235.089] (-10239.573) (-10239.173) * (-10241.903) [-10243.962] (-10243.160) (-10237.485) -- 0:02:45
394000 -- (-10245.800) (-10241.129) (-10244.051) [-10242.479] * (-10238.783) (-10241.155) (-10244.335) [-10239.765] -- 0:02:44
395000 -- (-10238.513) (-10234.134) [-10237.870] (-10246.159) * (-10241.123) (-10240.126) [-10238.241] (-10241.929) -- 0:02:43
Average standard deviation of split frequencies: 0.011484
396000 -- (-10241.445) (-10235.280) [-10241.101] (-10237.627) * (-10241.563) (-10242.646) (-10240.049) [-10236.835] -- 0:02:43
397000 -- (-10244.415) (-10241.344) [-10236.314] (-10233.556) * (-10246.600) (-10234.478) (-10252.498) [-10246.811] -- 0:02:44
398000 -- (-10242.402) (-10235.493) (-10245.253) [-10239.961] * [-10237.248] (-10244.437) (-10236.018) (-10242.416) -- 0:02:43
399000 -- (-10236.529) [-10239.163] (-10243.407) (-10253.684) * (-10258.080) (-10242.360) [-10239.113] (-10248.104) -- 0:02:42
400000 -- [-10241.069] (-10243.167) (-10237.831) (-10236.453) * (-10246.703) [-10242.473] (-10244.440) (-10239.844) -- 0:02:43
Average standard deviation of split frequencies: 0.011766
401000 -- (-10247.762) (-10248.326) (-10242.577) [-10243.218] * (-10246.079) [-10234.540] (-10239.740) (-10253.056) -- 0:02:42
402000 -- (-10242.928) (-10257.248) [-10246.945] (-10243.537) * (-10247.767) [-10238.415] (-10236.037) (-10242.981) -- 0:02:42
403000 -- (-10243.797) [-10251.748] (-10255.573) (-10243.072) * (-10249.216) [-10238.869] (-10244.570) (-10241.289) -- 0:02:41
404000 -- (-10233.848) (-10243.121) [-10242.454] (-10241.120) * (-10252.029) [-10243.545] (-10237.426) (-10239.927) -- 0:02:42
405000 -- [-10238.885] (-10243.054) (-10237.162) (-10237.766) * [-10242.600] (-10241.413) (-10240.931) (-10244.641) -- 0:02:41
Average standard deviation of split frequencies: 0.012089
406000 -- (-10238.992) [-10236.578] (-10241.666) (-10237.141) * (-10246.581) (-10243.741) (-10257.077) [-10240.558] -- 0:02:40
407000 -- (-10242.215) (-10239.869) (-10244.939) [-10235.562] * (-10246.246) [-10243.329] (-10240.244) (-10237.149) -- 0:02:40
408000 -- (-10239.660) (-10263.969) [-10242.023] (-10235.641) * (-10241.709) [-10241.577] (-10233.162) (-10234.867) -- 0:02:41
409000 -- [-10237.135] (-10247.589) (-10246.885) (-10245.493) * (-10244.585) (-10238.489) (-10240.958) [-10244.457] -- 0:02:40
410000 -- (-10245.255) (-10240.999) [-10238.782] (-10246.648) * [-10233.619] (-10246.926) (-10238.683) (-10242.379) -- 0:02:39
Average standard deviation of split frequencies: 0.011660
411000 -- (-10243.804) (-10248.781) [-10241.271] (-10242.468) * (-10243.247) (-10240.462) [-10244.947] (-10236.451) -- 0:02:40
412000 -- [-10237.649] (-10241.604) (-10237.785) (-10255.325) * (-10236.406) [-10232.892] (-10245.790) (-10248.640) -- 0:02:39
413000 -- [-10237.985] (-10242.144) (-10248.353) (-10253.029) * [-10243.799] (-10237.569) (-10241.134) (-10241.365) -- 0:02:39
414000 -- [-10232.709] (-10248.332) (-10237.137) (-10238.488) * (-10238.181) [-10242.567] (-10245.176) (-10237.794) -- 0:02:38
415000 -- (-10248.421) [-10238.200] (-10243.036) (-10242.572) * (-10243.838) (-10248.703) (-10246.525) [-10236.535] -- 0:02:39
Average standard deviation of split frequencies: 0.012465
416000 -- (-10245.149) [-10233.603] (-10242.830) (-10237.851) * (-10242.760) (-10242.147) [-10239.810] (-10236.652) -- 0:02:38
417000 -- (-10248.577) [-10239.220] (-10246.814) (-10242.336) * (-10243.689) (-10240.914) [-10239.637] (-10235.993) -- 0:02:37
418000 -- (-10242.596) [-10234.606] (-10250.019) (-10240.938) * [-10239.057] (-10249.940) (-10238.177) (-10243.521) -- 0:02:37
419000 -- [-10235.998] (-10239.652) (-10236.186) (-10241.686) * (-10244.215) (-10243.442) (-10241.060) [-10238.180] -- 0:02:38
420000 -- [-10230.814] (-10252.540) (-10246.013) (-10251.229) * (-10233.510) [-10233.912] (-10240.399) (-10238.967) -- 0:02:37
Average standard deviation of split frequencies: 0.012949
421000 -- (-10242.242) [-10238.477] (-10231.420) (-10242.727) * (-10236.425) (-10243.690) (-10242.579) [-10238.474] -- 0:02:36
422000 -- (-10236.933) (-10239.591) [-10240.699] (-10246.078) * (-10249.374) [-10240.300] (-10235.745) (-10237.682) -- 0:02:36
423000 -- (-10241.529) (-10237.201) [-10241.446] (-10243.248) * (-10245.425) (-10236.862) [-10244.245] (-10235.918) -- 0:02:36
424000 -- (-10238.518) (-10243.214) [-10241.068] (-10232.730) * [-10239.519] (-10232.530) (-10242.161) (-10239.826) -- 0:02:36
425000 -- (-10235.258) (-10240.470) (-10237.059) [-10242.769] * [-10235.958] (-10240.247) (-10239.878) (-10234.855) -- 0:02:35
Average standard deviation of split frequencies: 0.012664
426000 -- (-10246.425) (-10231.743) [-10242.693] (-10245.521) * [-10233.919] (-10238.410) (-10238.222) (-10243.007) -- 0:02:34
427000 -- [-10238.098] (-10243.006) (-10237.832) (-10245.214) * (-10237.284) (-10245.016) [-10241.039] (-10236.074) -- 0:02:35
428000 -- [-10237.338] (-10234.236) (-10236.619) (-10234.149) * [-10237.232] (-10235.386) (-10246.275) (-10246.257) -- 0:02:35
429000 -- (-10245.701) (-10238.272) (-10243.300) [-10238.650] * (-10242.133) [-10239.946] (-10243.490) (-10249.093) -- 0:02:34
430000 -- [-10239.333] (-10239.502) (-10237.826) (-10237.123) * (-10243.147) [-10244.165] (-10247.319) (-10241.564) -- 0:02:35
Average standard deviation of split frequencies: 0.011311
431000 -- [-10235.123] (-10243.625) (-10236.043) (-10233.099) * (-10240.913) (-10240.635) (-10237.480) [-10237.955] -- 0:02:34
432000 -- [-10241.143] (-10238.644) (-10240.809) (-10241.485) * (-10238.518) (-10241.581) (-10244.959) [-10236.165] -- 0:02:33
433000 -- (-10240.006) [-10241.114] (-10245.654) (-10237.395) * (-10236.557) (-10235.714) [-10237.822] (-10237.831) -- 0:02:33
434000 -- (-10239.124) [-10241.762] (-10247.949) (-10242.181) * (-10241.747) (-10237.756) [-10235.775] (-10238.736) -- 0:02:33
435000 -- (-10240.746) (-10232.014) (-10254.164) [-10241.337] * (-10239.137) (-10242.949) (-10248.783) [-10233.372] -- 0:02:33
Average standard deviation of split frequencies: 0.011575
436000 -- (-10235.535) (-10235.912) [-10236.432] (-10244.491) * (-10238.625) [-10242.336] (-10243.396) (-10236.250) -- 0:02:32
437000 -- (-10241.031) [-10238.693] (-10241.391) (-10241.948) * (-10239.572) [-10235.777] (-10241.976) (-10236.282) -- 0:02:32
438000 -- (-10237.226) (-10254.055) (-10243.136) [-10238.862] * [-10241.431] (-10239.980) (-10244.447) (-10247.013) -- 0:02:32
439000 -- (-10241.507) [-10241.774] (-10242.513) (-10248.155) * (-10251.549) (-10244.936) (-10242.682) [-10238.411] -- 0:02:32
440000 -- (-10247.905) (-10244.260) [-10251.004] (-10235.997) * (-10241.945) (-10246.023) (-10238.831) [-10242.186] -- 0:02:31
Average standard deviation of split frequencies: 0.011767
441000 -- [-10237.412] (-10238.832) (-10242.494) (-10236.006) * (-10239.624) (-10242.844) (-10241.294) [-10238.757] -- 0:02:32
442000 -- [-10243.563] (-10243.516) (-10240.106) (-10242.258) * [-10240.569] (-10236.923) (-10240.832) (-10244.698) -- 0:02:31
443000 -- (-10239.348) (-10247.601) (-10250.347) [-10233.187] * (-10244.730) (-10242.961) [-10236.244] (-10246.711) -- 0:02:30
444000 -- (-10245.355) (-10236.726) [-10240.930] (-10237.781) * [-10242.076] (-10238.622) (-10239.553) (-10242.067) -- 0:02:30
445000 -- (-10240.694) (-10245.722) (-10239.881) [-10241.583] * (-10239.304) [-10242.093] (-10250.899) (-10249.781) -- 0:02:30
Average standard deviation of split frequencies: 0.012062
446000 -- (-10238.860) [-10238.942] (-10248.959) (-10239.343) * (-10242.769) (-10245.360) [-10236.198] (-10236.862) -- 0:02:30
447000 -- (-10247.412) [-10244.320] (-10241.848) (-10246.400) * (-10240.842) (-10237.586) (-10240.660) [-10240.431] -- 0:02:29
448000 -- (-10242.952) (-10240.381) (-10241.363) [-10242.379] * [-10251.656] (-10238.065) (-10234.104) (-10242.220) -- 0:02:29
449000 -- (-10239.071) [-10236.848] (-10245.662) (-10237.935) * [-10237.646] (-10246.607) (-10238.552) (-10238.929) -- 0:02:29
450000 -- (-10243.803) [-10246.297] (-10252.334) (-10238.715) * (-10241.976) (-10245.144) [-10236.965] (-10247.634) -- 0:02:29
Average standard deviation of split frequencies: 0.012368
451000 -- (-10240.355) (-10246.427) [-10243.814] (-10248.817) * (-10240.361) (-10247.788) (-10235.766) [-10239.380] -- 0:02:28
452000 -- (-10237.038) (-10241.508) (-10234.619) [-10237.954] * [-10234.241] (-10235.442) (-10240.579) (-10241.557) -- 0:02:29
453000 -- [-10235.307] (-10252.383) (-10240.184) (-10244.661) * (-10245.306) [-10238.970] (-10243.491) (-10239.970) -- 0:02:28
454000 -- (-10245.786) [-10243.296] (-10240.595) (-10244.485) * (-10238.803) (-10239.631) (-10251.176) [-10240.191] -- 0:02:27
455000 -- (-10239.715) (-10247.564) [-10239.044] (-10240.616) * (-10239.875) (-10239.162) (-10242.776) [-10248.234] -- 0:02:27
Average standard deviation of split frequencies: 0.012233
456000 -- (-10241.462) [-10245.160] (-10236.294) (-10241.172) * (-10260.686) [-10238.787] (-10250.225) (-10249.803) -- 0:02:27
457000 -- (-10238.033) [-10238.361] (-10244.730) (-10237.400) * [-10241.815] (-10243.306) (-10245.389) (-10240.600) -- 0:02:27
458000 -- (-10244.178) (-10233.691) (-10238.891) [-10243.123] * (-10244.085) [-10239.445] (-10242.931) (-10242.440) -- 0:02:26
459000 -- [-10235.596] (-10236.886) (-10245.005) (-10237.751) * (-10237.323) [-10236.494] (-10244.820) (-10249.478) -- 0:02:26
460000 -- (-10241.911) (-10243.934) [-10241.454] (-10247.413) * (-10240.382) (-10243.909) [-10244.574] (-10251.716) -- 0:02:26
Average standard deviation of split frequencies: 0.012052
461000 -- (-10240.949) (-10240.436) (-10244.159) [-10248.369] * [-10242.542] (-10244.975) (-10242.337) (-10249.541) -- 0:02:26
462000 -- (-10239.266) (-10243.921) (-10239.925) [-10246.290] * (-10236.049) [-10242.499] (-10239.851) (-10247.374) -- 0:02:25
463000 -- (-10237.779) (-10237.366) (-10244.854) [-10236.982] * (-10246.063) (-10245.143) (-10237.507) [-10240.474] -- 0:02:24
464000 -- [-10235.089] (-10239.754) (-10240.782) (-10238.346) * (-10242.252) (-10241.683) [-10241.573] (-10242.440) -- 0:02:25
465000 -- (-10232.719) (-10246.064) (-10245.041) [-10246.294] * (-10240.858) (-10245.822) [-10236.791] (-10235.118) -- 0:02:24
Average standard deviation of split frequencies: 0.012870
466000 -- (-10242.384) [-10234.156] (-10252.712) (-10253.292) * (-10240.705) (-10242.483) (-10237.499) [-10239.595] -- 0:02:24
467000 -- (-10243.222) [-10235.684] (-10249.825) (-10252.088) * (-10242.443) (-10243.117) (-10240.541) [-10237.322] -- 0:02:24
468000 -- (-10246.109) (-10251.311) [-10244.464] (-10244.497) * (-10239.240) (-10240.338) (-10247.766) [-10240.437] -- 0:02:24
469000 -- (-10234.622) (-10241.016) (-10241.183) [-10241.220] * (-10240.447) [-10239.108] (-10243.752) (-10241.911) -- 0:02:23
470000 -- (-10249.791) (-10239.362) [-10247.603] (-10246.103) * (-10239.646) (-10243.755) [-10240.219] (-10235.272) -- 0:02:23
Average standard deviation of split frequencies: 0.013187
471000 -- (-10239.060) (-10243.192) [-10253.139] (-10234.506) * (-10237.977) (-10248.114) (-10247.714) [-10243.300] -- 0:02:23
472000 -- (-10239.670) [-10248.210] (-10242.621) (-10243.803) * (-10245.079) (-10236.962) (-10242.202) [-10236.417] -- 0:02:23
473000 -- [-10232.199] (-10243.568) (-10240.886) (-10242.361) * (-10236.139) (-10235.812) (-10247.176) [-10239.390] -- 0:02:22
474000 -- [-10237.981] (-10244.411) (-10240.013) (-10243.055) * (-10247.912) (-10239.851) (-10239.233) [-10247.192] -- 0:02:22
475000 -- [-10241.309] (-10243.407) (-10243.256) (-10241.930) * (-10238.474) (-10233.528) (-10242.537) [-10237.368] -- 0:02:22
Average standard deviation of split frequencies: 0.013810
476000 -- [-10243.272] (-10239.811) (-10240.546) (-10245.062) * (-10240.038) (-10249.794) (-10236.879) [-10237.325] -- 0:02:22
477000 -- (-10235.028) (-10237.083) [-10247.811] (-10248.564) * (-10242.227) (-10240.675) [-10234.821] (-10241.799) -- 0:02:21
478000 -- (-10245.104) (-10240.111) [-10241.048] (-10246.575) * (-10240.165) (-10234.796) [-10248.810] (-10254.910) -- 0:02:20
479000 -- (-10236.525) (-10249.353) [-10241.442] (-10243.842) * (-10246.976) (-10245.708) (-10248.994) [-10236.330] -- 0:02:21
480000 -- [-10241.636] (-10238.685) (-10240.216) (-10239.809) * [-10239.321] (-10252.579) (-10243.474) (-10244.925) -- 0:02:20
Average standard deviation of split frequencies: 0.013294
481000 -- (-10249.148) (-10232.549) [-10245.269] (-10242.961) * [-10246.847] (-10239.147) (-10245.985) (-10245.168) -- 0:02:20
482000 -- [-10236.936] (-10248.277) (-10241.108) (-10239.855) * (-10240.671) (-10253.672) (-10235.452) [-10236.626] -- 0:02:20
483000 -- (-10241.493) (-10243.147) [-10238.344] (-10241.239) * (-10239.235) (-10236.593) [-10234.742] (-10240.643) -- 0:02:20
484000 -- (-10251.263) (-10235.105) [-10237.468] (-10238.474) * (-10242.186) (-10241.043) [-10236.074] (-10248.399) -- 0:02:19
485000 -- (-10238.466) (-10244.670) [-10235.585] (-10240.380) * (-10238.516) (-10242.502) [-10237.508] (-10236.687) -- 0:02:19
Average standard deviation of split frequencies: 0.012879
486000 -- [-10235.184] (-10243.384) (-10237.454) (-10246.333) * [-10240.976] (-10238.952) (-10240.707) (-10255.517) -- 0:02:19
487000 -- [-10242.948] (-10235.793) (-10247.644) (-10241.021) * (-10242.484) [-10244.798] (-10240.799) (-10249.329) -- 0:02:19
488000 -- (-10242.649) [-10236.185] (-10234.881) (-10232.445) * (-10243.543) [-10233.492] (-10235.670) (-10236.816) -- 0:02:18
489000 -- (-10244.470) (-10240.627) (-10233.367) [-10237.085] * (-10244.679) (-10236.790) (-10238.448) [-10237.101] -- 0:02:17
490000 -- (-10236.167) (-10239.430) (-10248.060) [-10233.913] * (-10247.178) [-10235.314] (-10242.882) (-10240.677) -- 0:02:18
Average standard deviation of split frequencies: 0.013023
491000 -- (-10232.103) (-10237.330) (-10245.477) [-10240.760] * (-10249.916) [-10251.499] (-10240.571) (-10239.904) -- 0:02:17
492000 -- [-10231.884] (-10246.634) (-10241.278) (-10241.327) * [-10241.338] (-10250.927) (-10247.751) (-10242.916) -- 0:02:17
493000 -- (-10237.965) [-10242.454] (-10242.316) (-10246.310) * (-10237.530) [-10241.938] (-10242.166) (-10237.573) -- 0:02:16
494000 -- [-10240.184] (-10236.382) (-10250.723) (-10242.200) * (-10244.127) [-10238.290] (-10236.125) (-10241.532) -- 0:02:17
495000 -- (-10234.326) [-10237.650] (-10245.405) (-10251.098) * (-10237.355) (-10245.495) [-10246.930] (-10242.791) -- 0:02:16
Average standard deviation of split frequencies: 0.013138
496000 -- (-10243.190) (-10240.752) (-10258.770) [-10241.832] * (-10238.004) (-10240.337) [-10238.071] (-10242.404) -- 0:02:16
497000 -- (-10241.687) (-10253.521) [-10235.427] (-10239.201) * (-10245.863) (-10249.133) (-10241.963) [-10233.685] -- 0:02:16
498000 -- (-10242.008) (-10237.582) (-10237.359) [-10237.441] * (-10247.891) [-10242.845] (-10242.805) (-10243.925) -- 0:02:16
499000 -- (-10249.366) (-10238.940) (-10248.036) [-10241.482] * (-10250.691) (-10238.658) (-10243.480) [-10239.552] -- 0:02:15
500000 -- [-10239.867] (-10237.691) (-10238.246) (-10249.010) * [-10237.180] (-10245.638) (-10242.795) (-10239.877) -- 0:02:15
Average standard deviation of split frequencies: 0.013286
501000 -- (-10246.125) [-10233.491] (-10243.972) (-10246.854) * [-10241.768] (-10239.196) (-10237.288) (-10242.931) -- 0:02:15
502000 -- (-10246.221) [-10243.326] (-10238.584) (-10240.311) * (-10237.299) (-10244.075) (-10241.634) [-10237.592] -- 0:02:14
503000 -- (-10238.191) (-10241.184) (-10249.982) [-10235.325] * (-10250.323) [-10242.058] (-10241.361) (-10240.723) -- 0:02:14
504000 -- [-10238.489] (-10239.836) (-10243.723) (-10239.220) * (-10242.709) (-10246.292) (-10238.958) [-10240.419] -- 0:02:13
505000 -- (-10251.596) (-10241.591) (-10241.945) [-10238.772] * [-10234.937] (-10241.065) (-10239.635) (-10238.765) -- 0:02:14
Average standard deviation of split frequencies: 0.013198
506000 -- (-10242.720) (-10250.644) [-10238.805] (-10246.997) * [-10248.074] (-10236.399) (-10243.468) (-10239.280) -- 0:02:13
507000 -- (-10240.042) (-10243.965) [-10232.464] (-10240.650) * (-10237.258) [-10239.185] (-10240.326) (-10241.051) -- 0:02:13
508000 -- (-10237.297) (-10239.284) [-10238.125] (-10246.090) * (-10241.594) [-10246.129] (-10242.454) (-10237.464) -- 0:02:12
509000 -- (-10239.391) (-10237.144) [-10241.053] (-10233.525) * (-10235.632) [-10235.760] (-10241.834) (-10246.921) -- 0:02:13
510000 -- (-10238.545) (-10243.838) (-10238.069) [-10243.412] * (-10245.616) (-10243.190) (-10243.082) [-10237.577] -- 0:02:12
Average standard deviation of split frequencies: 0.013385
511000 -- (-10239.064) (-10238.649) (-10237.511) [-10236.654] * (-10235.905) (-10244.790) (-10240.676) [-10245.951] -- 0:02:12
512000 -- (-10234.781) (-10247.027) (-10242.149) [-10237.792] * (-10252.655) (-10238.081) [-10242.189] (-10251.343) -- 0:02:12
513000 -- (-10248.396) (-10240.459) (-10243.113) [-10238.709] * (-10249.273) [-10241.119] (-10238.124) (-10237.814) -- 0:02:11
514000 -- (-10239.274) (-10247.690) (-10246.460) [-10239.299] * (-10236.788) (-10247.303) [-10235.876] (-10248.209) -- 0:02:11
515000 -- [-10235.205] (-10242.095) (-10240.068) (-10248.590) * (-10235.941) [-10240.289] (-10247.422) (-10240.381) -- 0:02:10
Average standard deviation of split frequencies: 0.013145
516000 -- [-10242.856] (-10255.821) (-10236.551) (-10243.725) * [-10241.478] (-10241.745) (-10245.217) (-10246.969) -- 0:02:11
517000 -- (-10240.868) (-10252.497) [-10234.232] (-10245.097) * (-10236.052) (-10241.306) (-10242.939) [-10241.690] -- 0:02:10
518000 -- (-10234.843) [-10239.332] (-10236.087) (-10247.829) * (-10242.582) (-10235.829) [-10238.892] (-10247.904) -- 0:02:10
519000 -- (-10242.347) (-10242.402) (-10238.214) [-10239.895] * (-10242.826) (-10251.369) [-10233.336] (-10247.545) -- 0:02:09
520000 -- (-10240.524) (-10240.821) [-10238.266] (-10239.437) * (-10238.449) (-10240.975) [-10239.144] (-10242.382) -- 0:02:10
Average standard deviation of split frequencies: 0.013329
521000 -- (-10245.951) [-10235.758] (-10238.896) (-10240.011) * (-10245.715) (-10242.412) (-10240.743) [-10240.781] -- 0:02:09
522000 -- (-10248.026) (-10241.183) [-10240.976] (-10238.015) * (-10246.056) (-10237.489) (-10251.898) [-10240.499] -- 0:02:09
523000 -- (-10237.486) (-10251.852) (-10235.103) [-10249.414] * (-10242.884) (-10245.905) [-10233.660] (-10239.417) -- 0:02:09
524000 -- (-10237.280) (-10236.841) (-10233.967) [-10243.762] * [-10234.918] (-10250.140) (-10240.754) (-10241.457) -- 0:02:08
525000 -- (-10242.774) [-10235.220] (-10241.724) (-10237.018) * [-10239.996] (-10239.222) (-10244.059) (-10248.832) -- 0:02:08
Average standard deviation of split frequencies: 0.012447
526000 -- [-10235.660] (-10250.089) (-10238.585) (-10237.011) * (-10243.291) [-10243.947] (-10243.681) (-10249.452) -- 0:02:07
527000 -- (-10248.762) (-10231.974) (-10239.734) [-10237.177] * [-10240.582] (-10242.532) (-10256.138) (-10243.255) -- 0:02:08
528000 -- (-10236.981) [-10240.324] (-10246.285) (-10237.872) * (-10243.239) (-10249.451) [-10240.114] (-10232.741) -- 0:02:07
529000 -- (-10244.844) (-10237.559) (-10236.958) [-10245.883] * [-10238.660] (-10238.443) (-10239.129) (-10239.106) -- 0:02:07
530000 -- [-10237.270] (-10237.816) (-10247.197) (-10237.780) * (-10251.344) (-10246.351) [-10239.605] (-10241.780) -- 0:02:06
Average standard deviation of split frequencies: 0.012387
531000 -- (-10247.446) [-10240.470] (-10246.529) (-10251.764) * (-10247.538) [-10251.503] (-10247.891) (-10234.443) -- 0:02:07
532000 -- (-10244.407) (-10244.606) [-10241.258] (-10245.434) * (-10242.402) [-10237.268] (-10241.142) (-10235.957) -- 0:02:06
533000 -- (-10243.360) (-10240.949) (-10245.481) [-10237.307] * (-10258.645) (-10240.607) [-10239.740] (-10239.257) -- 0:02:06
534000 -- [-10239.051] (-10244.432) (-10254.510) (-10239.368) * (-10253.649) (-10258.807) [-10234.697] (-10235.292) -- 0:02:06
535000 -- (-10240.000) (-10240.742) (-10234.360) [-10235.011] * (-10248.531) (-10244.609) (-10234.177) [-10241.085] -- 0:02:06
Average standard deviation of split frequencies: 0.012985
536000 -- (-10245.965) [-10237.006] (-10238.623) (-10237.390) * [-10232.894] (-10241.076) (-10245.417) (-10240.451) -- 0:02:05
537000 -- (-10246.092) (-10246.411) [-10235.024] (-10241.794) * [-10238.578] (-10248.311) (-10240.617) (-10250.470) -- 0:02:05
538000 -- [-10236.335] (-10243.756) (-10239.620) (-10250.096) * (-10244.085) (-10251.132) [-10251.493] (-10248.666) -- 0:02:05
539000 -- (-10246.700) (-10251.992) [-10241.191] (-10238.019) * (-10233.400) (-10256.866) [-10242.202] (-10244.904) -- 0:02:04
540000 -- (-10244.969) (-10245.173) (-10249.949) [-10239.943] * (-10247.274) [-10245.445] (-10246.812) (-10244.341) -- 0:02:04
Average standard deviation of split frequencies: 0.012400
541000 -- (-10249.233) [-10240.126] (-10235.423) (-10240.712) * (-10240.600) (-10233.493) [-10238.351] (-10239.443) -- 0:02:04
542000 -- (-10249.811) [-10240.746] (-10242.706) (-10242.379) * (-10238.485) (-10236.023) [-10237.295] (-10247.706) -- 0:02:04
543000 -- (-10243.542) (-10249.239) [-10237.501] (-10260.204) * (-10243.285) (-10246.899) (-10243.665) [-10238.477] -- 0:02:03
544000 -- (-10237.816) [-10236.246] (-10246.767) (-10242.814) * (-10234.121) (-10242.132) (-10246.058) [-10235.464] -- 0:02:03
545000 -- (-10245.045) (-10233.706) [-10232.100] (-10246.808) * [-10239.435] (-10250.442) (-10239.071) (-10242.920) -- 0:02:03
Average standard deviation of split frequencies: 0.011860
546000 -- (-10239.827) [-10235.282] (-10244.968) (-10241.684) * (-10246.081) (-10243.978) (-10242.765) [-10237.148] -- 0:02:03
547000 -- (-10247.929) [-10234.987] (-10240.018) (-10239.952) * (-10242.299) (-10243.302) [-10232.346] (-10241.206) -- 0:02:02
548000 -- (-10246.506) (-10236.909) [-10236.571] (-10244.253) * (-10247.564) (-10245.207) (-10242.252) [-10238.783] -- 0:02:02
549000 -- (-10236.444) (-10244.821) (-10237.492) [-10241.558] * (-10238.580) [-10238.009] (-10237.442) (-10239.480) -- 0:02:02
550000 -- [-10245.423] (-10247.976) (-10244.901) (-10234.167) * (-10237.038) (-10246.891) [-10237.423] (-10241.580) -- 0:02:01
Average standard deviation of split frequencies: 0.012032
551000 -- [-10235.398] (-10239.652) (-10247.839) (-10239.711) * (-10244.655) (-10247.731) [-10235.623] (-10240.739) -- 0:02:02
552000 -- (-10239.789) [-10235.656] (-10235.305) (-10243.160) * (-10239.800) (-10237.065) (-10241.493) [-10240.579] -- 0:02:01
553000 -- (-10245.457) (-10240.030) [-10241.836] (-10238.652) * (-10243.552) (-10241.958) [-10247.255] (-10238.599) -- 0:02:01
554000 -- (-10240.796) (-10237.531) [-10242.829] (-10239.405) * [-10242.197] (-10239.924) (-10249.352) (-10244.976) -- 0:02:00
555000 -- [-10236.018] (-10243.301) (-10233.235) (-10242.679) * (-10239.119) (-10237.555) (-10248.233) [-10240.940] -- 0:02:01
Average standard deviation of split frequencies: 0.012105
556000 -- (-10239.630) [-10235.470] (-10242.907) (-10238.838) * (-10238.396) (-10236.925) (-10239.266) [-10238.523] -- 0:02:00
557000 -- (-10245.279) [-10237.136] (-10237.165) (-10237.974) * (-10233.750) (-10240.900) [-10243.039] (-10238.814) -- 0:02:00
558000 -- (-10244.431) (-10238.885) [-10232.974] (-10241.352) * (-10245.942) [-10246.023] (-10238.731) (-10247.158) -- 0:01:59
559000 -- (-10237.859) [-10241.354] (-10240.481) (-10239.475) * [-10232.299] (-10236.524) (-10242.436) (-10243.687) -- 0:01:59
560000 -- [-10240.081] (-10239.150) (-10235.894) (-10237.625) * (-10249.977) (-10238.297) (-10247.529) [-10235.716] -- 0:01:59
Average standard deviation of split frequencies: 0.011284
561000 -- [-10243.775] (-10250.568) (-10240.262) (-10244.620) * [-10235.776] (-10239.114) (-10250.448) (-10254.061) -- 0:01:58
562000 -- (-10246.943) (-10246.253) [-10232.670] (-10247.671) * (-10246.230) (-10236.430) (-10238.474) [-10237.682] -- 0:01:58
563000 -- [-10237.774] (-10246.956) (-10238.090) (-10242.005) * (-10242.897) [-10242.190] (-10238.539) (-10243.925) -- 0:01:58
564000 -- [-10243.986] (-10234.395) (-10237.255) (-10254.371) * (-10236.426) [-10237.242] (-10237.557) (-10240.351) -- 0:01:58
565000 -- (-10237.283) (-10243.965) [-10241.012] (-10237.647) * [-10244.905] (-10242.157) (-10230.359) (-10245.945) -- 0:01:57
Average standard deviation of split frequencies: 0.011397
566000 -- (-10247.297) (-10251.403) [-10230.292] (-10243.392) * (-10246.435) (-10240.373) [-10236.969] (-10248.546) -- 0:01:58
567000 -- [-10250.903] (-10242.296) (-10235.061) (-10243.972) * (-10236.995) [-10240.267] (-10235.208) (-10246.409) -- 0:01:57
568000 -- (-10240.625) [-10236.029] (-10249.846) (-10245.019) * [-10245.738] (-10238.494) (-10238.981) (-10248.694) -- 0:01:57
569000 -- (-10244.554) (-10242.940) (-10247.195) [-10247.370] * (-10239.922) (-10249.053) (-10255.067) [-10251.900] -- 0:01:56
570000 -- (-10242.413) [-10238.457] (-10235.343) (-10243.200) * (-10245.333) [-10248.893] (-10247.098) (-10235.652) -- 0:01:56
Average standard deviation of split frequencies: 0.010945
571000 -- (-10238.915) [-10229.554] (-10241.925) (-10241.231) * (-10241.418) [-10244.473] (-10234.496) (-10242.234) -- 0:01:56
572000 -- [-10243.159] (-10235.807) (-10236.867) (-10239.893) * (-10237.653) (-10239.068) (-10244.447) [-10233.872] -- 0:01:55
573000 -- (-10244.172) [-10244.235] (-10240.611) (-10242.971) * (-10232.242) (-10243.161) [-10245.944] (-10243.514) -- 0:01:55
574000 -- (-10235.390) (-10244.203) [-10243.212] (-10254.667) * (-10242.089) (-10235.557) [-10242.211] (-10245.796) -- 0:01:55
575000 -- [-10230.228] (-10239.138) (-10242.084) (-10240.140) * (-10236.563) (-10243.716) [-10235.503] (-10252.107) -- 0:01:55
Average standard deviation of split frequencies: 0.011544
576000 -- (-10242.604) (-10237.598) [-10237.263] (-10240.874) * (-10238.429) (-10239.866) (-10238.961) [-10234.072] -- 0:01:54
577000 -- (-10245.259) (-10243.774) (-10241.069) [-10243.206] * [-10240.434] (-10237.894) (-10236.000) (-10248.840) -- 0:01:55
578000 -- (-10245.092) (-10243.247) (-10240.998) [-10239.789] * (-10246.465) (-10246.194) (-10242.057) [-10240.683] -- 0:01:54
579000 -- [-10236.929] (-10241.356) (-10244.549) (-10243.112) * (-10239.733) (-10252.443) (-10241.201) [-10251.005] -- 0:01:54
580000 -- (-10235.005) (-10254.643) [-10239.016] (-10239.099) * (-10235.231) (-10249.053) (-10236.585) [-10236.166] -- 0:01:53
Average standard deviation of split frequencies: 0.011280
581000 -- (-10241.193) [-10246.553] (-10242.519) (-10236.987) * (-10245.388) [-10237.004] (-10242.328) (-10237.894) -- 0:01:53
582000 -- [-10241.604] (-10240.166) (-10250.796) (-10248.917) * (-10234.922) (-10250.817) [-10237.312] (-10242.041) -- 0:01:53
583000 -- (-10244.276) (-10246.750) (-10239.656) [-10242.191] * (-10242.993) [-10249.512] (-10245.903) (-10234.619) -- 0:01:53
584000 -- (-10242.553) [-10242.375] (-10239.602) (-10244.398) * (-10242.718) (-10242.991) (-10246.794) [-10246.251] -- 0:01:52
585000 -- [-10236.368] (-10236.170) (-10241.331) (-10255.209) * [-10240.053] (-10237.943) (-10244.335) (-10242.496) -- 0:01:52
Average standard deviation of split frequencies: 0.010881
586000 -- (-10245.546) (-10235.316) (-10240.884) [-10241.745] * [-10237.284] (-10243.882) (-10254.518) (-10234.161) -- 0:01:52
587000 -- (-10244.471) (-10241.789) [-10235.029] (-10242.606) * (-10237.975) (-10242.273) (-10240.822) [-10242.338] -- 0:01:51
588000 -- (-10234.096) (-10243.551) [-10239.604] (-10235.056) * (-10235.658) (-10242.892) [-10236.431] (-10250.884) -- 0:01:51
589000 -- (-10243.280) (-10247.491) [-10238.070] (-10238.243) * (-10237.753) (-10240.387) [-10239.375] (-10242.724) -- 0:01:51
590000 -- (-10256.649) (-10239.298) (-10244.585) [-10234.286] * (-10233.987) [-10242.450] (-10245.511) (-10244.321) -- 0:01:51
Average standard deviation of split frequencies: 0.010711
591000 -- (-10244.680) [-10234.113] (-10246.033) (-10243.876) * (-10234.877) [-10253.659] (-10245.380) (-10246.310) -- 0:01:50
592000 -- (-10238.186) (-10242.227) [-10239.968] (-10239.801) * (-10233.279) (-10240.455) [-10240.140] (-10243.893) -- 0:01:50
593000 -- (-10236.775) (-10246.152) [-10240.424] (-10236.636) * (-10239.744) [-10236.498] (-10245.985) (-10242.365) -- 0:01:50
594000 -- (-10237.000) [-10240.564] (-10250.334) (-10242.446) * (-10240.055) (-10244.508) (-10237.170) [-10237.085] -- 0:01:50
595000 -- (-10244.757) [-10246.275] (-10240.756) (-10245.910) * (-10244.032) [-10235.402] (-10245.566) (-10238.119) -- 0:01:49
Average standard deviation of split frequencies: 0.010407
596000 -- (-10249.241) (-10237.250) [-10235.999] (-10237.764) * (-10244.325) (-10247.263) (-10247.322) [-10239.264] -- 0:01:49
597000 -- (-10236.705) (-10247.703) (-10241.226) [-10240.258] * (-10239.351) [-10238.542] (-10237.895) (-10234.231) -- 0:01:49
598000 -- (-10245.196) (-10238.113) [-10245.715] (-10245.502) * (-10243.136) (-10244.736) [-10236.307] (-10235.991) -- 0:01:48
599000 -- (-10247.996) (-10241.244) [-10236.195] (-10240.123) * (-10241.551) (-10250.586) (-10240.652) [-10235.233] -- 0:01:48
600000 -- (-10250.153) (-10248.875) [-10240.500] (-10240.327) * [-10248.703] (-10242.102) (-10241.124) (-10246.104) -- 0:01:48
Average standard deviation of split frequencies: 0.009996
601000 -- (-10245.283) (-10240.989) (-10248.865) [-10233.890] * (-10243.731) [-10238.587] (-10241.783) (-10247.530) -- 0:01:48
602000 -- [-10236.156] (-10244.297) (-10243.622) (-10236.752) * [-10236.416] (-10244.926) (-10240.407) (-10252.443) -- 0:01:47
603000 -- (-10241.912) (-10237.342) (-10242.249) [-10235.785] * (-10246.317) (-10247.536) [-10238.778] (-10241.641) -- 0:01:47
604000 -- (-10242.017) [-10242.639] (-10244.943) (-10235.809) * (-10240.166) [-10252.105] (-10246.041) (-10235.670) -- 0:01:47
605000 -- (-10245.226) (-10247.839) (-10243.000) [-10234.506] * (-10240.186) (-10246.629) [-10243.843] (-10246.851) -- 0:01:47
Average standard deviation of split frequencies: 0.010604
606000 -- (-10247.391) [-10229.757] (-10246.863) (-10248.429) * (-10243.164) (-10243.931) [-10239.899] (-10239.579) -- 0:01:46
607000 -- (-10240.188) (-10236.051) (-10248.531) [-10241.878] * (-10236.519) (-10247.664) [-10238.723] (-10236.557) -- 0:01:46
608000 -- (-10235.544) (-10235.184) [-10242.992] (-10238.364) * (-10238.392) (-10242.982) [-10236.901] (-10242.739) -- 0:01:46
609000 -- (-10245.221) (-10250.104) (-10239.337) [-10240.438] * (-10240.771) (-10240.858) (-10234.084) [-10242.990] -- 0:01:45
610000 -- (-10247.031) (-10239.518) [-10238.968] (-10240.708) * (-10245.860) (-10236.467) [-10236.804] (-10256.976) -- 0:01:45
Average standard deviation of split frequencies: 0.010239
611000 -- (-10247.235) (-10246.016) (-10248.211) [-10235.903] * (-10233.921) (-10246.126) [-10244.723] (-10239.943) -- 0:01:45
612000 -- (-10243.908) (-10244.559) [-10240.538] (-10253.159) * [-10240.312] (-10242.171) (-10244.231) (-10247.022) -- 0:01:45
613000 -- (-10245.615) (-10242.631) (-10243.143) [-10240.994] * (-10242.983) (-10231.332) [-10239.774] (-10246.098) -- 0:01:44
614000 -- (-10243.700) (-10240.345) [-10240.207] (-10232.575) * (-10247.778) (-10238.359) [-10243.757] (-10237.507) -- 0:01:44
615000 -- (-10238.318) (-10249.290) (-10245.034) [-10234.093] * (-10241.433) [-10236.346] (-10239.263) (-10241.799) -- 0:01:44
Average standard deviation of split frequencies: 0.010351
616000 -- [-10242.623] (-10244.309) (-10240.153) (-10233.757) * (-10243.449) [-10237.060] (-10242.804) (-10242.253) -- 0:01:44
617000 -- (-10237.043) (-10253.616) [-10241.751] (-10241.954) * [-10235.539] (-10236.595) (-10243.667) (-10255.565) -- 0:01:43
618000 -- (-10236.345) (-10237.264) [-10232.879] (-10241.196) * [-10239.570] (-10245.650) (-10240.400) (-10236.031) -- 0:01:43
619000 -- (-10243.476) (-10242.910) (-10235.846) [-10238.016] * [-10238.257] (-10235.690) (-10247.768) (-10235.098) -- 0:01:43
620000 -- (-10246.868) (-10244.283) [-10251.598] (-10252.974) * (-10247.675) (-10251.120) (-10241.672) [-10238.132] -- 0:01:42
Average standard deviation of split frequencies: 0.010380
621000 -- [-10238.797] (-10246.478) (-10244.398) (-10248.914) * (-10243.165) [-10235.817] (-10242.047) (-10239.919) -- 0:01:42
622000 -- (-10245.460) (-10242.495) (-10245.126) [-10233.468] * (-10236.658) (-10248.549) [-10239.923] (-10244.616) -- 0:01:42
623000 -- (-10235.750) (-10247.983) (-10246.063) [-10243.638] * (-10231.548) (-10243.752) [-10245.189] (-10244.505) -- 0:01:42
624000 -- [-10235.692] (-10240.401) (-10242.089) (-10248.358) * [-10241.562] (-10240.164) (-10258.042) (-10241.561) -- 0:01:41
625000 -- (-10235.418) (-10239.300) (-10242.454) [-10238.179] * [-10234.558] (-10234.260) (-10247.729) (-10252.003) -- 0:01:41
Average standard deviation of split frequencies: 0.010226
626000 -- [-10235.249] (-10238.738) (-10243.192) (-10242.441) * (-10241.648) (-10238.158) [-10240.586] (-10244.434) -- 0:01:41
627000 -- (-10248.512) [-10233.573] (-10244.023) (-10237.724) * (-10242.742) (-10254.557) [-10248.265] (-10240.259) -- 0:01:41
628000 -- (-10241.488) [-10239.931] (-10234.039) (-10244.367) * (-10249.491) (-10240.808) (-10238.582) [-10243.782] -- 0:01:40
629000 -- (-10239.845) [-10234.907] (-10243.753) (-10237.178) * (-10241.619) [-10240.767] (-10245.648) (-10236.772) -- 0:01:40
630000 -- (-10244.774) [-10236.980] (-10244.672) (-10243.803) * (-10245.545) (-10244.288) (-10243.247) [-10239.266] -- 0:01:40
Average standard deviation of split frequencies: 0.010838
631000 -- (-10242.868) (-10244.803) (-10236.281) [-10243.592] * [-10241.363] (-10235.857) (-10235.304) (-10241.394) -- 0:01:39
632000 -- (-10240.072) (-10238.724) [-10238.599] (-10238.698) * (-10244.094) (-10239.765) (-10251.692) [-10242.856] -- 0:01:39
633000 -- (-10240.993) [-10237.343] (-10254.353) (-10241.020) * (-10240.885) (-10238.201) [-10240.063] (-10239.784) -- 0:01:39
634000 -- (-10246.084) [-10236.064] (-10246.885) (-10239.654) * [-10238.558] (-10243.060) (-10240.618) (-10246.320) -- 0:01:39
635000 -- (-10245.597) (-10238.333) [-10234.294] (-10246.000) * (-10246.983) [-10231.790] (-10236.233) (-10239.350) -- 0:01:38
Average standard deviation of split frequencies: 0.010706
636000 -- [-10243.999] (-10236.314) (-10239.524) (-10248.634) * (-10241.863) (-10236.166) [-10239.820] (-10242.336) -- 0:01:38
637000 -- (-10249.099) [-10234.617] (-10237.888) (-10235.052) * (-10238.489) (-10237.805) (-10249.060) [-10238.764] -- 0:01:38
638000 -- [-10239.857] (-10245.100) (-10246.668) (-10242.944) * (-10239.405) (-10237.382) [-10239.867] (-10234.497) -- 0:01:38
639000 -- (-10248.588) (-10233.396) [-10235.159] (-10242.675) * [-10242.011] (-10237.658) (-10237.393) (-10239.928) -- 0:01:37
640000 -- [-10238.580] (-10232.519) (-10238.210) (-10239.414) * (-10246.644) (-10237.061) (-10244.842) [-10233.367] -- 0:01:37
Average standard deviation of split frequencies: 0.010792
641000 -- [-10237.182] (-10237.202) (-10244.278) (-10247.624) * (-10237.515) [-10240.551] (-10244.641) (-10241.030) -- 0:01:37
642000 -- (-10241.867) (-10234.772) [-10238.062] (-10246.691) * (-10237.773) (-10233.946) [-10240.117] (-10248.507) -- 0:01:37
643000 -- (-10242.414) (-10245.452) (-10236.578) [-10240.929] * [-10242.822] (-10239.399) (-10248.805) (-10235.207) -- 0:01:36
644000 -- (-10238.447) (-10248.320) (-10245.090) [-10244.998] * (-10253.381) (-10244.555) (-10242.227) [-10235.177] -- 0:01:36
645000 -- (-10234.504) [-10238.572] (-10243.088) (-10246.466) * (-10238.107) (-10232.978) (-10243.998) [-10235.176] -- 0:01:36
Average standard deviation of split frequencies: 0.010622
646000 -- [-10249.099] (-10232.887) (-10238.957) (-10258.058) * (-10245.220) [-10234.131] (-10240.299) (-10236.719) -- 0:01:35
647000 -- [-10240.432] (-10241.492) (-10232.983) (-10235.116) * (-10234.659) (-10241.503) [-10236.996] (-10240.448) -- 0:01:35
648000 -- [-10237.218] (-10237.314) (-10238.683) (-10241.475) * (-10236.438) (-10246.077) [-10246.678] (-10239.175) -- 0:01:35
649000 -- (-10244.499) (-10251.199) [-10236.242] (-10249.575) * [-10237.814] (-10251.689) (-10243.971) (-10240.759) -- 0:01:35
650000 -- [-10236.563] (-10242.781) (-10249.406) (-10240.774) * [-10238.144] (-10246.266) (-10244.532) (-10245.515) -- 0:01:34
Average standard deviation of split frequencies: 0.010867
651000 -- (-10244.866) [-10238.532] (-10235.221) (-10238.166) * (-10238.200) [-10240.462] (-10238.150) (-10242.927) -- 0:01:34
652000 -- [-10241.790] (-10242.305) (-10237.573) (-10245.453) * (-10245.269) (-10243.179) [-10244.895] (-10242.069) -- 0:01:34
653000 -- [-10236.139] (-10242.068) (-10238.331) (-10238.984) * (-10247.104) (-10253.495) (-10242.024) [-10241.691] -- 0:01:34
654000 -- (-10245.704) [-10242.816] (-10241.289) (-10241.741) * (-10232.736) [-10237.438] (-10235.060) (-10237.781) -- 0:01:33
655000 -- [-10237.021] (-10250.660) (-10237.756) (-10237.618) * (-10249.902) (-10241.069) (-10238.992) [-10242.081] -- 0:01:33
Average standard deviation of split frequencies: 0.010540
656000 -- [-10233.603] (-10239.146) (-10234.908) (-10240.952) * (-10244.440) (-10237.723) [-10239.762] (-10239.890) -- 0:01:33
657000 -- (-10235.322) (-10239.195) [-10235.417] (-10242.221) * (-10244.299) (-10245.233) (-10244.095) [-10245.501] -- 0:01:32
658000 -- (-10240.386) (-10244.032) [-10239.814] (-10237.611) * [-10244.750] (-10248.469) (-10243.780) (-10243.723) -- 0:01:32
659000 -- [-10237.485] (-10232.525) (-10237.600) (-10234.569) * [-10246.225] (-10242.062) (-10240.235) (-10240.748) -- 0:01:32
660000 -- [-10243.610] (-10243.486) (-10241.280) (-10243.268) * (-10236.664) (-10236.377) (-10246.452) [-10244.864] -- 0:01:32
Average standard deviation of split frequencies: 0.010029
661000 -- [-10235.365] (-10242.489) (-10239.514) (-10244.367) * (-10239.083) (-10246.902) [-10234.891] (-10242.558) -- 0:01:31
662000 -- [-10235.279] (-10239.793) (-10235.713) (-10250.994) * (-10239.178) (-10237.456) (-10242.842) [-10235.496] -- 0:01:31
663000 -- (-10235.578) [-10240.622] (-10244.043) (-10242.856) * (-10248.129) (-10246.066) (-10247.997) [-10233.575] -- 0:01:31
664000 -- [-10238.895] (-10236.251) (-10242.072) (-10244.102) * (-10243.248) (-10240.189) (-10246.949) [-10235.381] -- 0:01:31
665000 -- (-10235.572) (-10236.923) [-10239.309] (-10240.876) * (-10254.680) (-10242.073) [-10241.742] (-10234.922) -- 0:01:30
Average standard deviation of split frequencies: 0.010303
666000 -- [-10238.702] (-10255.247) (-10245.617) (-10233.093) * (-10240.074) (-10241.294) [-10242.306] (-10241.511) -- 0:01:30
667000 -- (-10240.715) [-10242.783] (-10238.936) (-10239.392) * (-10249.153) (-10239.510) (-10247.370) [-10235.530] -- 0:01:30
668000 -- (-10235.518) (-10245.203) [-10240.882] (-10241.733) * (-10243.948) (-10252.144) [-10240.398] (-10234.620) -- 0:01:29
669000 -- (-10242.264) (-10241.357) [-10242.751] (-10243.917) * [-10230.976] (-10238.091) (-10246.076) (-10249.535) -- 0:01:29
670000 -- (-10245.644) (-10234.199) (-10236.770) [-10239.635] * (-10236.523) (-10241.606) (-10242.688) [-10242.997] -- 0:01:29
Average standard deviation of split frequencies: 0.010136
671000 -- (-10240.583) (-10240.697) [-10243.872] (-10235.372) * (-10244.060) (-10249.675) (-10249.758) [-10236.476] -- 0:01:29
672000 -- (-10236.331) (-10248.473) (-10243.556) [-10236.382] * (-10239.007) (-10241.942) [-10242.373] (-10242.936) -- 0:01:28
673000 -- (-10235.505) (-10245.293) [-10248.170] (-10242.608) * (-10252.466) (-10234.328) [-10241.208] (-10246.577) -- 0:01:28
674000 -- (-10247.757) [-10243.938] (-10237.232) (-10253.727) * (-10243.133) (-10235.374) [-10239.328] (-10235.464) -- 0:01:28
675000 -- [-10242.014] (-10242.482) (-10246.597) (-10242.547) * (-10242.428) (-10242.714) (-10235.525) [-10239.526] -- 0:01:28
Average standard deviation of split frequencies: 0.009653
676000 -- [-10245.744] (-10257.063) (-10236.742) (-10238.581) * (-10242.238) (-10251.146) (-10238.275) [-10236.920] -- 0:01:27
677000 -- [-10238.823] (-10240.111) (-10238.128) (-10241.632) * (-10236.930) (-10243.871) [-10239.676] (-10237.450) -- 0:01:27
678000 -- [-10238.130] (-10237.684) (-10239.202) (-10235.280) * (-10234.891) (-10237.336) (-10233.726) [-10239.283] -- 0:01:27
679000 -- (-10236.513) (-10232.710) (-10238.390) [-10240.952] * (-10243.374) [-10241.203] (-10237.051) (-10243.750) -- 0:01:26
680000 -- (-10248.046) (-10243.924) [-10247.520] (-10234.826) * (-10241.079) [-10231.163] (-10237.209) (-10243.208) -- 0:01:26
Average standard deviation of split frequencies: 0.009773
681000 -- (-10234.236) (-10233.883) (-10241.357) [-10240.867] * [-10238.924] (-10239.266) (-10238.313) (-10238.303) -- 0:01:26
682000 -- (-10243.322) (-10242.548) (-10234.483) [-10241.581] * (-10238.028) [-10236.509] (-10238.090) (-10243.354) -- 0:01:26
683000 -- (-10241.276) (-10239.608) (-10234.763) [-10235.468] * (-10243.695) [-10238.203] (-10246.821) (-10239.669) -- 0:01:25
684000 -- (-10237.199) (-10233.975) [-10243.585] (-10237.551) * [-10235.393] (-10241.807) (-10238.012) (-10240.418) -- 0:01:25
685000 -- (-10240.430) (-10238.666) [-10247.949] (-10248.244) * (-10247.765) (-10244.454) [-10244.978] (-10243.974) -- 0:01:25
Average standard deviation of split frequencies: 0.009964
686000 -- [-10237.249] (-10240.847) (-10234.786) (-10241.416) * (-10243.283) (-10239.021) (-10244.687) [-10243.942] -- 0:01:25
687000 -- (-10239.294) (-10248.884) [-10240.645] (-10238.154) * (-10236.924) (-10245.004) [-10240.998] (-10244.331) -- 0:01:24
688000 -- (-10245.459) (-10235.656) (-10242.346) [-10246.189] * (-10244.265) (-10244.872) (-10240.573) [-10237.291] -- 0:01:24
689000 -- [-10240.122] (-10241.459) (-10248.682) (-10238.235) * (-10238.737) (-10238.462) [-10234.782] (-10243.109) -- 0:01:24
690000 -- (-10237.016) (-10247.690) [-10237.598] (-10244.058) * [-10232.990] (-10245.906) (-10236.453) (-10243.679) -- 0:01:24
Average standard deviation of split frequencies: 0.009783
691000 -- [-10238.147] (-10243.162) (-10251.345) (-10241.867) * [-10244.813] (-10242.334) (-10238.964) (-10237.532) -- 0:01:23
692000 -- (-10255.412) [-10234.574] (-10242.511) (-10243.243) * (-10238.196) (-10250.051) [-10243.866] (-10241.168) -- 0:01:23
693000 -- (-10241.524) (-10249.365) [-10235.701] (-10245.670) * (-10237.160) (-10242.733) (-10241.334) [-10232.674] -- 0:01:23
694000 -- (-10239.366) [-10242.523] (-10239.158) (-10239.986) * (-10240.030) (-10234.713) (-10241.522) [-10237.300] -- 0:01:22
695000 -- (-10240.458) (-10241.570) [-10240.018] (-10242.961) * (-10237.569) (-10245.505) (-10236.007) [-10238.652] -- 0:01:22
Average standard deviation of split frequencies: 0.009144
696000 -- (-10241.701) (-10239.042) (-10244.846) [-10239.236] * (-10237.885) (-10251.470) [-10242.287] (-10241.031) -- 0:01:22
697000 -- (-10249.013) (-10241.933) [-10242.649] (-10241.114) * (-10246.011) [-10243.838] (-10243.136) (-10240.792) -- 0:01:22
698000 -- [-10238.597] (-10248.576) (-10247.994) (-10249.819) * (-10239.954) (-10248.464) [-10240.108] (-10239.236) -- 0:01:21
699000 -- (-10235.990) [-10241.294] (-10261.640) (-10239.532) * [-10242.472] (-10243.580) (-10239.382) (-10237.923) -- 0:01:21
700000 -- [-10239.176] (-10242.523) (-10240.207) (-10244.608) * (-10242.685) [-10246.898] (-10244.487) (-10242.556) -- 0:01:21
Average standard deviation of split frequencies: 0.009083
701000 -- (-10246.433) (-10238.625) (-10238.485) [-10238.398] * (-10243.548) (-10245.506) [-10240.542] (-10243.856) -- 0:01:21
702000 -- (-10235.696) (-10246.128) (-10242.399) [-10238.661] * [-10237.550] (-10240.800) (-10238.199) (-10233.769) -- 0:01:20
703000 -- [-10239.107] (-10237.090) (-10238.872) (-10242.597) * (-10253.792) (-10234.753) [-10238.692] (-10238.402) -- 0:01:20
704000 -- (-10242.274) (-10238.480) [-10239.554] (-10241.898) * (-10241.062) (-10234.117) [-10236.495] (-10252.676) -- 0:01:20
705000 -- (-10255.306) (-10235.176) [-10243.789] (-10243.388) * (-10233.967) (-10246.250) [-10240.829] (-10251.473) -- 0:01:19
Average standard deviation of split frequencies: 0.009125
706000 -- (-10241.121) (-10248.215) (-10245.635) [-10246.896] * (-10238.514) (-10240.725) (-10241.570) [-10235.554] -- 0:01:19
707000 -- (-10241.356) [-10240.276] (-10241.777) (-10235.129) * (-10249.185) (-10244.519) [-10235.193] (-10241.934) -- 0:01:19
708000 -- [-10232.008] (-10255.046) (-10237.046) (-10246.185) * (-10248.663) (-10239.092) (-10247.398) [-10236.722] -- 0:01:19
709000 -- [-10238.547] (-10237.609) (-10240.336) (-10252.498) * (-10251.126) (-10235.276) (-10249.429) [-10234.728] -- 0:01:18
710000 -- (-10238.237) (-10241.621) [-10243.134] (-10240.412) * (-10246.751) [-10239.033] (-10247.441) (-10249.492) -- 0:01:18
Average standard deviation of split frequencies: 0.008844
711000 -- (-10243.123) (-10237.724) (-10239.042) [-10247.128] * (-10240.382) [-10235.656] (-10249.676) (-10253.542) -- 0:01:18
712000 -- (-10242.644) (-10242.030) (-10257.557) [-10234.743] * (-10246.829) [-10242.556] (-10233.508) (-10235.708) -- 0:01:18
713000 -- (-10240.745) (-10237.245) [-10237.198] (-10257.289) * (-10246.142) (-10249.512) (-10237.401) [-10237.480] -- 0:01:17
714000 -- [-10243.411] (-10244.997) (-10242.059) (-10242.240) * (-10240.104) (-10250.995) [-10244.135] (-10238.721) -- 0:01:17
715000 -- (-10247.643) [-10233.058] (-10246.377) (-10249.035) * (-10246.736) (-10253.346) (-10241.055) [-10238.555] -- 0:01:17
Average standard deviation of split frequencies: 0.009009
716000 -- (-10246.400) (-10244.063) (-10236.651) [-10238.526] * (-10239.215) (-10248.907) [-10237.293] (-10243.160) -- 0:01:16
717000 -- [-10236.880] (-10249.367) (-10246.306) (-10238.758) * (-10234.636) (-10241.014) [-10237.514] (-10247.649) -- 0:01:16
718000 -- (-10242.978) (-10250.877) [-10239.650] (-10242.316) * (-10237.495) [-10241.661] (-10241.519) (-10245.939) -- 0:01:16
719000 -- (-10239.519) (-10239.585) (-10238.833) [-10239.697] * (-10240.483) (-10243.297) [-10239.601] (-10243.534) -- 0:01:16
720000 -- [-10247.605] (-10245.694) (-10238.787) (-10245.563) * [-10237.728] (-10244.678) (-10245.523) (-10239.563) -- 0:01:15
Average standard deviation of split frequencies: 0.008986
721000 -- (-10235.802) (-10242.546) [-10237.929] (-10236.702) * (-10242.656) (-10236.676) [-10248.888] (-10242.717) -- 0:01:15
722000 -- [-10233.259] (-10243.301) (-10241.699) (-10237.146) * (-10244.067) (-10245.455) [-10233.626] (-10242.861) -- 0:01:15
723000 -- (-10249.669) [-10243.119] (-10235.849) (-10241.955) * (-10241.589) [-10251.851] (-10244.293) (-10247.830) -- 0:01:15
724000 -- [-10239.631] (-10245.518) (-10240.593) (-10242.025) * (-10234.325) (-10239.895) [-10240.138] (-10238.308) -- 0:01:14
725000 -- (-10239.713) (-10243.017) (-10260.314) [-10237.098] * [-10240.155] (-10232.297) (-10239.863) (-10240.741) -- 0:01:14
Average standard deviation of split frequencies: 0.009193
726000 -- (-10240.349) (-10239.243) [-10238.205] (-10242.120) * (-10238.586) [-10241.038] (-10237.628) (-10248.858) -- 0:01:14
727000 -- (-10236.180) [-10236.279] (-10234.040) (-10235.874) * (-10234.629) (-10240.209) [-10236.944] (-10243.520) -- 0:01:13
728000 -- [-10242.622] (-10244.856) (-10239.607) (-10236.625) * (-10249.764) (-10246.834) (-10256.762) [-10240.165] -- 0:01:13
729000 -- [-10237.277] (-10237.418) (-10239.166) (-10244.926) * [-10245.773] (-10240.548) (-10235.045) (-10241.095) -- 0:01:13
730000 -- (-10241.214) [-10239.110] (-10247.835) (-10243.958) * [-10243.016] (-10250.111) (-10238.767) (-10244.964) -- 0:01:13
Average standard deviation of split frequencies: 0.009066
731000 -- (-10238.959) (-10246.900) (-10250.713) [-10231.970] * (-10240.978) (-10256.878) (-10242.707) [-10240.630] -- 0:01:12
732000 -- [-10241.755] (-10240.141) (-10244.847) (-10241.046) * (-10238.571) (-10244.356) (-10238.142) [-10240.375] -- 0:01:12
733000 -- (-10234.670) (-10241.492) (-10246.724) [-10236.370] * [-10235.325] (-10246.967) (-10238.703) (-10256.668) -- 0:01:12
734000 -- [-10239.069] (-10238.133) (-10238.460) (-10247.731) * (-10241.317) (-10244.249) [-10229.487] (-10259.654) -- 0:01:12
735000 -- [-10237.626] (-10238.299) (-10237.789) (-10235.554) * (-10232.093) (-10243.525) [-10241.763] (-10240.746) -- 0:01:11
Average standard deviation of split frequencies: 0.009169
736000 -- (-10244.216) [-10237.691] (-10237.721) (-10247.957) * [-10241.507] (-10255.946) (-10238.604) (-10239.072) -- 0:01:11
737000 -- (-10242.581) (-10246.154) (-10234.668) [-10240.642] * (-10240.249) [-10241.534] (-10237.815) (-10249.013) -- 0:01:11
738000 -- (-10238.021) (-10244.072) [-10238.489] (-10246.962) * (-10235.685) [-10235.642] (-10243.951) (-10243.719) -- 0:01:11
739000 -- [-10239.486] (-10248.562) (-10243.058) (-10241.610) * (-10237.689) [-10248.081] (-10237.140) (-10243.336) -- 0:01:10
740000 -- (-10245.356) (-10243.088) (-10239.851) [-10234.405] * [-10237.560] (-10246.293) (-10245.993) (-10249.757) -- 0:01:10
Average standard deviation of split frequencies: 0.009011
741000 -- (-10242.345) [-10234.443] (-10246.958) (-10258.230) * [-10235.839] (-10244.439) (-10244.080) (-10237.273) -- 0:01:10
742000 -- [-10238.412] (-10242.379) (-10244.953) (-10241.469) * (-10241.936) (-10239.811) [-10239.440] (-10235.020) -- 0:01:09
743000 -- (-10236.692) [-10246.851] (-10253.852) (-10245.010) * [-10236.315] (-10240.289) (-10246.407) (-10237.106) -- 0:01:09
744000 -- [-10237.692] (-10239.112) (-10234.729) (-10237.640) * (-10239.924) (-10249.203) [-10234.101] (-10243.686) -- 0:01:09
745000 -- (-10238.014) (-10239.250) [-10249.726] (-10257.765) * (-10232.570) (-10244.635) (-10240.561) [-10242.222] -- 0:01:09
Average standard deviation of split frequencies: 0.009246
746000 -- [-10239.792] (-10245.140) (-10235.779) (-10247.798) * (-10239.677) [-10241.399] (-10240.747) (-10245.109) -- 0:01:08
747000 -- (-10236.110) [-10235.264] (-10244.207) (-10237.853) * [-10242.096] (-10240.853) (-10236.738) (-10244.431) -- 0:01:08
748000 -- (-10242.624) (-10237.650) [-10234.642] (-10238.658) * (-10247.751) (-10250.713) (-10250.280) [-10237.355] -- 0:01:08
749000 -- (-10250.942) (-10240.950) [-10240.690] (-10239.880) * (-10244.409) (-10244.013) (-10241.425) [-10242.209] -- 0:01:08
750000 -- [-10238.685] (-10241.880) (-10238.904) (-10248.455) * [-10238.620] (-10240.708) (-10238.014) (-10259.566) -- 0:01:07
Average standard deviation of split frequencies: 0.009023
751000 -- [-10239.460] (-10237.781) (-10252.616) (-10239.799) * [-10238.698] (-10235.960) (-10241.586) (-10246.023) -- 0:01:07
752000 -- (-10247.819) [-10238.719] (-10251.133) (-10249.307) * (-10243.715) (-10247.439) (-10248.645) [-10233.815] -- 0:01:07
753000 -- (-10248.852) (-10239.354) [-10244.750] (-10243.911) * [-10244.510] (-10241.380) (-10239.433) (-10239.410) -- 0:01:06
754000 -- (-10249.108) [-10245.509] (-10240.295) (-10242.901) * [-10238.440] (-10237.136) (-10242.606) (-10242.874) -- 0:01:06
755000 -- (-10245.383) [-10242.218] (-10242.027) (-10241.810) * (-10238.650) [-10236.469] (-10237.652) (-10235.264) -- 0:01:06
Average standard deviation of split frequencies: 0.008823
756000 -- [-10244.943] (-10247.225) (-10245.696) (-10249.186) * (-10247.639) [-10235.958] (-10235.347) (-10239.447) -- 0:01:06
757000 -- (-10236.537) (-10246.613) (-10234.994) [-10245.899] * (-10239.089) (-10245.144) [-10236.502] (-10241.833) -- 0:01:05
758000 -- (-10243.632) (-10241.652) [-10235.446] (-10234.572) * (-10242.177) (-10236.661) (-10240.758) [-10243.935] -- 0:01:05
759000 -- (-10240.650) [-10238.170] (-10236.592) (-10244.860) * (-10243.576) (-10248.209) (-10242.626) [-10239.181] -- 0:01:05
760000 -- (-10255.587) (-10243.251) (-10244.966) [-10242.365] * (-10233.965) (-10243.535) (-10242.241) [-10236.107] -- 0:01:05
Average standard deviation of split frequencies: 0.008800
761000 -- (-10247.365) [-10237.432] (-10242.061) (-10231.768) * (-10248.131) [-10238.638] (-10240.806) (-10251.691) -- 0:01:04
762000 -- (-10233.473) (-10236.595) [-10237.307] (-10236.979) * (-10244.340) [-10238.791] (-10237.528) (-10244.976) -- 0:01:04
763000 -- (-10234.652) [-10237.004] (-10249.306) (-10235.270) * (-10240.239) (-10238.814) (-10249.348) [-10239.629] -- 0:01:04
764000 -- [-10234.224] (-10240.576) (-10241.919) (-10242.817) * (-10245.454) (-10242.773) (-10243.127) [-10235.388] -- 0:01:03
765000 -- (-10245.117) (-10241.309) (-10237.717) [-10242.299] * (-10250.958) [-10242.170] (-10246.090) (-10240.778) -- 0:01:03
Average standard deviation of split frequencies: 0.008708
766000 -- [-10236.771] (-10244.017) (-10238.922) (-10243.838) * (-10243.035) [-10243.609] (-10243.742) (-10240.581) -- 0:01:03
767000 -- (-10242.517) [-10240.434] (-10243.575) (-10242.304) * (-10237.294) [-10232.181] (-10240.085) (-10244.214) -- 0:01:03
768000 -- (-10241.802) [-10238.534] (-10236.625) (-10242.164) * [-10237.457] (-10255.266) (-10242.103) (-10247.454) -- 0:01:02
769000 -- (-10240.642) [-10235.013] (-10236.661) (-10237.325) * [-10237.645] (-10249.139) (-10243.609) (-10239.791) -- 0:01:02
770000 -- (-10243.993) [-10239.485] (-10244.084) (-10244.712) * (-10240.213) (-10243.385) (-10237.164) [-10235.800] -- 0:01:02
Average standard deviation of split frequencies: 0.008625
771000 -- (-10248.926) (-10234.849) (-10239.422) [-10243.153] * (-10242.362) (-10239.781) [-10238.045] (-10243.664) -- 0:01:02
772000 -- (-10243.965) (-10242.706) (-10247.812) [-10235.124] * [-10238.707] (-10248.774) (-10234.111) (-10242.398) -- 0:01:01
773000 -- (-10249.233) (-10244.687) (-10239.117) [-10236.077] * (-10246.401) (-10239.675) [-10234.717] (-10241.567) -- 0:01:01
774000 -- (-10258.621) (-10242.726) (-10245.774) [-10233.058] * [-10240.736] (-10242.479) (-10238.774) (-10249.779) -- 0:01:01
775000 -- [-10241.764] (-10251.482) (-10249.796) (-10232.292) * (-10233.157) (-10240.511) [-10241.149] (-10243.623) -- 0:01:00
Average standard deviation of split frequencies: 0.008474
776000 -- (-10237.417) (-10250.392) (-10241.903) [-10236.060] * (-10239.042) [-10237.360] (-10236.418) (-10240.151) -- 0:01:00
777000 -- (-10234.302) [-10238.626] (-10234.950) (-10240.191) * (-10240.026) [-10236.788] (-10243.268) (-10237.300) -- 0:01:00
778000 -- (-10248.994) (-10241.657) (-10242.643) [-10251.502] * (-10246.388) (-10241.903) (-10244.164) [-10241.177] -- 0:00:59
779000 -- [-10236.644] (-10246.481) (-10242.354) (-10240.046) * (-10239.062) [-10238.806] (-10244.984) (-10239.894) -- 0:00:59
780000 -- [-10241.454] (-10248.870) (-10232.129) (-10250.067) * (-10240.214) (-10243.119) [-10240.686] (-10248.856) -- 0:00:59
Average standard deviation of split frequencies: 0.008635
781000 -- (-10239.744) [-10242.908] (-10257.255) (-10235.689) * (-10237.980) (-10244.743) [-10245.934] (-10246.028) -- 0:00:59
782000 -- (-10246.739) (-10248.397) (-10245.886) [-10238.599] * (-10243.832) [-10244.816] (-10248.794) (-10236.851) -- 0:00:58
783000 -- (-10244.496) (-10248.871) (-10238.430) [-10238.969] * [-10236.480] (-10237.652) (-10251.091) (-10248.759) -- 0:00:58
784000 -- (-10257.116) (-10243.509) [-10241.244] (-10247.990) * (-10235.558) (-10242.368) [-10235.856] (-10240.325) -- 0:00:58
785000 -- (-10241.991) (-10237.316) (-10239.669) [-10237.050] * (-10247.050) (-10235.623) (-10241.775) [-10239.053] -- 0:00:58
Average standard deviation of split frequencies: 0.008486
786000 -- (-10242.536) (-10239.249) (-10244.595) [-10241.629] * (-10247.387) (-10244.461) [-10234.691] (-10248.406) -- 0:00:57
787000 -- [-10240.041] (-10241.613) (-10242.582) (-10239.998) * [-10249.567] (-10242.750) (-10236.292) (-10241.910) -- 0:00:57
788000 -- (-10239.818) [-10243.700] (-10241.066) (-10245.757) * (-10253.600) [-10233.935] (-10249.255) (-10236.601) -- 0:00:57
789000 -- (-10242.394) (-10242.540) [-10242.456] (-10235.452) * (-10237.064) [-10241.467] (-10252.714) (-10240.067) -- 0:00:56
790000 -- (-10243.763) (-10246.085) [-10234.212] (-10249.087) * (-10242.978) [-10241.803] (-10244.220) (-10239.843) -- 0:00:56
Average standard deviation of split frequencies: 0.008190
791000 -- (-10241.578) (-10240.410) [-10238.326] (-10256.981) * (-10236.939) (-10238.113) [-10240.751] (-10246.670) -- 0:00:56
792000 -- (-10241.264) (-10235.451) (-10242.412) [-10245.381] * [-10241.832] (-10251.402) (-10239.738) (-10234.652) -- 0:00:56
793000 -- (-10247.124) (-10248.410) [-10239.743] (-10238.170) * [-10238.022] (-10244.222) (-10236.651) (-10245.606) -- 0:00:55
794000 -- (-10240.620) (-10238.236) (-10237.956) [-10236.025] * (-10244.213) [-10239.244] (-10239.310) (-10244.860) -- 0:00:55
795000 -- [-10236.308] (-10241.808) (-10237.602) (-10244.526) * [-10237.943] (-10241.018) (-10243.054) (-10247.548) -- 0:00:55
Average standard deviation of split frequencies: 0.008166
796000 -- (-10245.673) (-10244.032) [-10246.715] (-10250.014) * (-10237.993) (-10236.008) (-10242.106) [-10237.401] -- 0:00:55
797000 -- (-10240.428) (-10238.328) [-10243.011] (-10239.981) * (-10243.386) (-10239.829) [-10235.324] (-10248.554) -- 0:00:55
798000 -- (-10246.211) [-10237.010] (-10238.050) (-10256.472) * (-10241.220) (-10235.373) [-10240.577] (-10249.498) -- 0:00:54
799000 -- (-10239.454) (-10240.235) [-10239.678] (-10244.917) * (-10250.134) (-10251.113) [-10233.334] (-10242.252) -- 0:00:54
800000 -- [-10230.846] (-10246.685) (-10239.923) (-10244.312) * (-10251.120) [-10243.383] (-10246.329) (-10242.385) -- 0:00:54
Average standard deviation of split frequencies: 0.008646
801000 -- (-10233.113) [-10235.126] (-10238.892) (-10242.969) * (-10239.968) (-10238.301) (-10238.918) [-10236.837] -- 0:00:53
802000 -- (-10233.104) (-10247.210) (-10240.697) [-10238.650] * [-10239.774] (-10248.784) (-10240.310) (-10239.301) -- 0:00:53
803000 -- (-10241.181) (-10246.454) [-10242.870] (-10246.484) * [-10235.677] (-10241.743) (-10249.989) (-10242.075) -- 0:00:53
804000 -- (-10237.147) (-10246.076) [-10236.644] (-10240.830) * (-10249.670) [-10243.381] (-10235.363) (-10237.551) -- 0:00:52
805000 -- (-10241.562) [-10234.807] (-10243.285) (-10245.793) * (-10248.031) (-10246.817) (-10252.025) [-10237.097] -- 0:00:52
Average standard deviation of split frequencies: 0.008989
806000 -- (-10242.334) (-10240.300) (-10236.876) [-10238.494] * (-10251.166) [-10235.929] (-10246.312) (-10250.842) -- 0:00:52
807000 -- [-10233.737] (-10246.824) (-10238.581) (-10238.791) * (-10248.829) [-10243.303] (-10243.543) (-10250.675) -- 0:00:52
808000 -- (-10261.147) [-10237.083] (-10241.230) (-10241.503) * (-10242.255) (-10246.687) [-10233.118] (-10237.056) -- 0:00:51
809000 -- (-10247.394) (-10237.457) (-10237.923) [-10243.362] * [-10233.203] (-10239.317) (-10240.849) (-10252.007) -- 0:00:51
810000 -- [-10247.473] (-10238.541) (-10241.526) (-10236.100) * [-10250.245] (-10247.303) (-10245.425) (-10245.328) -- 0:00:51
Average standard deviation of split frequencies: 0.008631
811000 -- (-10235.557) (-10241.229) (-10242.976) [-10232.535] * (-10243.443) [-10247.794] (-10243.817) (-10247.070) -- 0:00:51
812000 -- (-10242.088) [-10238.071] (-10241.467) (-10242.160) * (-10250.937) (-10246.234) (-10241.603) [-10235.235] -- 0:00:50
813000 -- (-10247.384) [-10240.897] (-10242.122) (-10236.257) * (-10237.137) [-10237.382] (-10235.587) (-10240.017) -- 0:00:50
814000 -- (-10249.589) (-10241.620) (-10257.130) [-10241.616] * (-10243.081) [-10232.197] (-10249.094) (-10240.467) -- 0:00:50
815000 -- (-10240.424) (-10245.576) [-10236.291] (-10241.526) * (-10245.495) [-10238.294] (-10249.606) (-10239.941) -- 0:00:49
Average standard deviation of split frequencies: 0.008513
816000 -- [-10242.870] (-10240.219) (-10246.540) (-10238.914) * (-10245.055) (-10238.463) [-10239.010] (-10237.845) -- 0:00:49
817000 -- (-10238.794) (-10235.732) [-10244.845] (-10243.307) * (-10233.811) (-10236.102) [-10242.457] (-10243.388) -- 0:00:49
818000 -- (-10244.507) (-10252.339) (-10237.772) [-10240.741] * (-10245.191) [-10234.135] (-10248.121) (-10244.889) -- 0:00:49
819000 -- (-10241.149) (-10251.808) [-10240.005] (-10239.426) * (-10237.686) [-10242.755] (-10241.172) (-10247.960) -- 0:00:48
820000 -- (-10233.145) (-10240.503) [-10236.125] (-10244.596) * (-10247.368) (-10239.159) [-10234.618] (-10233.274) -- 0:00:48
Average standard deviation of split frequencies: 0.008405
821000 -- [-10238.157] (-10238.123) (-10247.371) (-10243.725) * (-10233.850) [-10238.294] (-10242.382) (-10241.551) -- 0:00:48
822000 -- [-10232.560] (-10239.214) (-10241.111) (-10252.410) * (-10238.949) (-10242.862) [-10237.811] (-10251.083) -- 0:00:48
823000 -- (-10237.493) [-10237.771] (-10242.562) (-10246.276) * [-10239.922] (-10240.546) (-10241.741) (-10241.324) -- 0:00:47
824000 -- [-10239.061] (-10241.976) (-10243.622) (-10242.252) * [-10235.069] (-10240.666) (-10240.451) (-10243.838) -- 0:00:47
825000 -- [-10244.098] (-10231.269) (-10242.121) (-10237.483) * (-10239.081) (-10243.253) [-10235.185] (-10246.169) -- 0:00:47
Average standard deviation of split frequencies: 0.008290
826000 -- (-10239.078) (-10238.389) (-10245.454) [-10239.052] * [-10239.447] (-10242.392) (-10242.793) (-10236.963) -- 0:00:46
827000 -- (-10239.979) [-10239.199] (-10232.500) (-10238.320) * (-10233.201) [-10236.141] (-10243.474) (-10235.803) -- 0:00:46
828000 -- (-10245.278) [-10235.573] (-10241.725) (-10239.914) * [-10236.385] (-10240.734) (-10237.723) (-10248.744) -- 0:00:46
829000 -- (-10240.994) (-10236.199) [-10250.652] (-10242.020) * (-10238.219) [-10241.967] (-10239.317) (-10239.048) -- 0:00:46
830000 -- (-10248.130) (-10247.037) [-10243.839] (-10241.628) * (-10244.444) (-10238.816) (-10247.904) [-10242.202] -- 0:00:45
Average standard deviation of split frequencies: 0.008333
831000 -- [-10244.711] (-10238.940) (-10246.211) (-10238.823) * (-10242.996) [-10242.139] (-10242.484) (-10244.585) -- 0:00:45
832000 -- (-10247.176) [-10236.874] (-10236.895) (-10241.246) * (-10249.734) (-10247.178) [-10236.916] (-10243.479) -- 0:00:45
833000 -- (-10249.830) [-10237.283] (-10235.048) (-10237.913) * (-10241.575) [-10238.066] (-10241.724) (-10237.728) -- 0:00:45
834000 -- (-10248.134) [-10236.003] (-10236.053) (-10242.913) * (-10242.869) (-10242.656) (-10239.408) [-10240.995] -- 0:00:44
835000 -- (-10242.386) (-10246.093) [-10240.913] (-10243.601) * (-10247.328) (-10245.735) [-10238.105] (-10240.668) -- 0:00:44
Average standard deviation of split frequencies: 0.008013
836000 -- [-10241.945] (-10240.485) (-10238.120) (-10241.754) * [-10246.519] (-10240.468) (-10245.624) (-10246.862) -- 0:00:44
837000 -- (-10239.972) [-10236.298] (-10245.727) (-10241.878) * (-10243.880) [-10238.501] (-10238.521) (-10238.074) -- 0:00:44
838000 -- (-10249.436) (-10239.029) (-10245.015) [-10251.629] * [-10234.155] (-10241.042) (-10245.921) (-10241.097) -- 0:00:43
839000 -- (-10235.983) (-10250.407) (-10244.945) [-10234.189] * (-10240.551) (-10243.908) (-10245.996) [-10243.223] -- 0:00:43
840000 -- (-10237.404) [-10230.995] (-10241.052) (-10243.028) * (-10235.222) (-10243.999) [-10243.470] (-10240.938) -- 0:00:43
Average standard deviation of split frequencies: 0.007910
841000 -- (-10247.211) (-10238.601) [-10240.505] (-10245.334) * (-10237.157) (-10238.475) (-10238.928) [-10239.027] -- 0:00:42
842000 -- (-10253.233) (-10236.558) [-10236.559] (-10242.215) * [-10240.689] (-10243.683) (-10246.707) (-10243.953) -- 0:00:42
843000 -- (-10240.735) (-10248.118) [-10239.478] (-10240.402) * (-10233.676) (-10240.069) [-10240.815] (-10243.437) -- 0:00:42
844000 -- (-10243.240) (-10249.990) [-10238.164] (-10244.565) * (-10244.346) [-10239.674] (-10250.815) (-10244.472) -- 0:00:42
845000 -- (-10235.955) [-10236.642] (-10237.773) (-10237.873) * [-10239.908] (-10246.628) (-10239.548) (-10238.672) -- 0:00:42
Average standard deviation of split frequencies: 0.007478
846000 -- (-10233.369) (-10237.533) [-10232.456] (-10246.443) * (-10243.664) (-10245.268) (-10240.587) [-10239.280] -- 0:00:41
847000 -- (-10241.896) [-10235.580] (-10233.586) (-10241.351) * (-10247.104) (-10234.695) (-10241.391) [-10246.623] -- 0:00:41
848000 -- (-10240.551) (-10234.677) [-10239.752] (-10237.979) * [-10237.041] (-10239.025) (-10246.448) (-10242.644) -- 0:00:41
849000 -- (-10237.616) [-10237.367] (-10245.390) (-10238.591) * (-10244.961) (-10236.813) (-10250.085) [-10236.019] -- 0:00:40
850000 -- (-10237.290) (-10238.181) [-10246.943] (-10243.075) * (-10245.786) [-10238.247] (-10245.210) (-10237.771) -- 0:00:40
Average standard deviation of split frequencies: 0.007175
851000 -- (-10241.799) (-10239.600) (-10243.419) [-10239.327] * (-10239.323) (-10243.870) (-10245.553) [-10236.596] -- 0:00:40
852000 -- (-10243.122) (-10251.010) [-10238.310] (-10248.266) * (-10243.628) (-10239.604) [-10234.788] (-10240.407) -- 0:00:39
853000 -- [-10235.606] (-10245.285) (-10237.185) (-10239.534) * [-10236.675] (-10240.342) (-10242.697) (-10245.337) -- 0:00:39
854000 -- (-10244.225) (-10247.840) [-10234.442] (-10240.102) * (-10242.544) [-10233.487] (-10236.032) (-10236.109) -- 0:00:39
855000 -- (-10241.704) [-10242.079] (-10235.904) (-10247.803) * (-10243.155) [-10240.787] (-10239.718) (-10242.926) -- 0:00:39
Average standard deviation of split frequencies: 0.006898
856000 -- (-10244.422) (-10243.871) [-10239.550] (-10248.233) * (-10240.182) (-10247.910) [-10241.883] (-10236.082) -- 0:00:38
857000 -- (-10241.189) (-10238.647) [-10243.089] (-10243.324) * (-10236.076) (-10236.888) [-10240.581] (-10249.843) -- 0:00:38
858000 -- (-10249.598) (-10237.908) [-10237.305] (-10246.331) * [-10240.937] (-10234.502) (-10239.974) (-10237.226) -- 0:00:38
859000 -- (-10239.641) [-10231.884] (-10239.137) (-10248.028) * (-10244.996) (-10239.720) (-10233.779) [-10232.293] -- 0:00:38
860000 -- (-10238.787) (-10236.252) [-10236.715] (-10242.208) * [-10238.087] (-10243.576) (-10239.098) (-10247.098) -- 0:00:37
Average standard deviation of split frequencies: 0.006659
861000 -- (-10242.237) [-10234.530] (-10241.911) (-10247.928) * [-10238.215] (-10236.127) (-10244.415) (-10238.023) -- 0:00:37
862000 -- (-10237.090) [-10244.818] (-10234.153) (-10254.407) * (-10243.100) (-10236.949) [-10241.748] (-10245.479) -- 0:00:37
863000 -- [-10236.156] (-10239.893) (-10239.332) (-10243.260) * [-10243.463] (-10234.469) (-10254.829) (-10239.553) -- 0:00:36
864000 -- (-10238.885) [-10236.949] (-10243.021) (-10248.286) * [-10237.467] (-10242.708) (-10253.862) (-10237.737) -- 0:00:36
865000 -- [-10233.125] (-10246.153) (-10241.835) (-10247.021) * (-10239.851) (-10245.145) (-10238.313) [-10239.736] -- 0:00:36
Average standard deviation of split frequencies: 0.006332
866000 -- [-10238.214] (-10238.507) (-10240.503) (-10241.293) * (-10250.353) (-10256.000) [-10236.621] (-10239.140) -- 0:00:36
867000 -- (-10244.606) (-10244.214) [-10238.726] (-10242.570) * [-10235.493] (-10252.764) (-10241.327) (-10239.503) -- 0:00:35
868000 -- [-10239.199] (-10248.563) (-10239.368) (-10239.083) * [-10235.791] (-10240.302) (-10235.313) (-10239.587) -- 0:00:35
869000 -- (-10242.970) (-10251.539) (-10237.491) [-10239.576] * (-10242.305) [-10238.281] (-10235.444) (-10247.005) -- 0:00:35
870000 -- [-10235.518] (-10249.599) (-10252.150) (-10235.561) * (-10257.638) (-10247.158) (-10239.296) [-10236.138] -- 0:00:35
Average standard deviation of split frequencies: 0.006226
871000 -- (-10233.915) [-10243.638] (-10247.739) (-10245.145) * [-10248.206] (-10238.545) (-10246.403) (-10239.518) -- 0:00:34
872000 -- (-10251.845) (-10236.777) [-10238.902] (-10239.507) * (-10247.357) (-10240.823) (-10238.183) [-10240.362] -- 0:00:34
873000 -- [-10243.927] (-10248.331) (-10233.691) (-10246.150) * [-10243.924] (-10237.500) (-10243.307) (-10245.921) -- 0:00:34
874000 -- (-10251.004) (-10246.780) [-10237.457] (-10242.199) * (-10254.224) (-10240.234) [-10238.966] (-10242.206) -- 0:00:34
875000 -- [-10240.138] (-10241.500) (-10237.270) (-10236.140) * (-10241.485) (-10247.304) [-10237.867] (-10247.769) -- 0:00:33
Average standard deviation of split frequencies: 0.006009
876000 -- (-10255.586) (-10248.890) (-10240.355) [-10235.128] * (-10250.827) (-10235.624) (-10241.209) [-10236.886] -- 0:00:33
877000 -- [-10238.107] (-10252.467) (-10241.967) (-10234.868) * [-10242.649] (-10247.293) (-10244.834) (-10237.853) -- 0:00:33
878000 -- (-10250.393) (-10244.439) [-10241.538] (-10244.481) * (-10244.736) [-10246.629] (-10256.847) (-10236.592) -- 0:00:33
879000 -- [-10236.114] (-10243.743) (-10240.190) (-10244.056) * (-10247.855) [-10243.210] (-10244.634) (-10243.858) -- 0:00:32
880000 -- (-10243.519) (-10237.469) [-10240.093] (-10245.375) * (-10243.061) [-10239.575] (-10246.211) (-10244.867) -- 0:00:32
Average standard deviation of split frequencies: 0.006156
881000 -- (-10237.684) (-10239.220) [-10238.124] (-10240.546) * (-10236.211) (-10238.454) (-10234.540) [-10241.988] -- 0:00:32
882000 -- (-10243.938) (-10244.983) [-10238.950] (-10246.721) * (-10237.925) [-10241.013] (-10241.868) (-10242.633) -- 0:00:31
883000 -- [-10237.016] (-10248.487) (-10242.671) (-10238.305) * [-10240.663] (-10234.844) (-10241.837) (-10236.208) -- 0:00:31
884000 -- [-10237.044] (-10245.024) (-10242.803) (-10248.594) * (-10240.887) (-10247.638) [-10237.785] (-10236.599) -- 0:00:31
885000 -- (-10237.192) [-10242.923] (-10235.843) (-10241.602) * (-10231.393) [-10236.471] (-10243.774) (-10237.927) -- 0:00:31
Average standard deviation of split frequencies: 0.006326
886000 -- [-10234.580] (-10251.801) (-10248.508) (-10238.590) * (-10237.118) (-10243.741) (-10242.218) [-10237.909] -- 0:00:30
887000 -- [-10236.430] (-10234.793) (-10246.741) (-10240.736) * [-10245.485] (-10237.030) (-10238.268) (-10245.163) -- 0:00:30
888000 -- (-10238.176) (-10242.583) (-10244.204) [-10241.406] * (-10242.854) (-10236.864) (-10234.476) [-10238.704] -- 0:00:30
889000 -- [-10231.992] (-10242.657) (-10240.895) (-10237.083) * [-10239.992] (-10248.389) (-10247.956) (-10253.370) -- 0:00:30
890000 -- (-10237.233) (-10241.262) (-10246.672) [-10245.127] * (-10246.974) (-10234.580) [-10237.610] (-10240.698) -- 0:00:29
Average standard deviation of split frequencies: 0.006600
891000 -- (-10246.811) (-10246.784) (-10240.936) [-10236.750] * (-10251.657) (-10244.998) (-10239.642) [-10239.216] -- 0:00:29
892000 -- [-10240.192] (-10253.541) (-10237.056) (-10237.107) * [-10243.209] (-10237.138) (-10236.212) (-10244.266) -- 0:00:29
893000 -- (-10239.760) (-10252.138) (-10246.008) [-10242.287] * (-10246.410) (-10241.490) [-10240.710] (-10241.482) -- 0:00:28
894000 -- (-10239.212) (-10242.155) (-10239.674) [-10236.751] * [-10238.040] (-10246.425) (-10237.793) (-10248.130) -- 0:00:28
895000 -- (-10245.158) (-10245.096) (-10238.716) [-10231.027] * (-10250.887) [-10242.998] (-10251.941) (-10248.829) -- 0:00:28
Average standard deviation of split frequencies: 0.005787
896000 -- (-10241.883) [-10241.352] (-10236.368) (-10242.764) * (-10244.144) [-10239.595] (-10246.682) (-10250.699) -- 0:00:28
897000 -- [-10233.750] (-10254.396) (-10241.719) (-10254.011) * (-10252.144) (-10242.614) [-10240.313] (-10238.509) -- 0:00:27
898000 -- [-10241.642] (-10245.474) (-10249.858) (-10246.660) * (-10249.402) [-10244.806] (-10237.319) (-10243.595) -- 0:00:27
899000 -- [-10240.758] (-10233.948) (-10250.438) (-10239.414) * (-10248.495) (-10240.561) [-10241.245] (-10243.772) -- 0:00:27
900000 -- (-10245.441) (-10242.120) (-10244.962) [-10235.425] * (-10244.394) (-10248.337) [-10244.721] (-10244.274) -- 0:00:27
Average standard deviation of split frequencies: 0.006215
901000 -- (-10249.100) (-10253.614) (-10244.730) [-10242.805] * [-10249.630] (-10247.682) (-10244.555) (-10235.934) -- 0:00:26
902000 -- [-10246.996] (-10245.024) (-10243.621) (-10239.477) * (-10243.794) (-10236.355) [-10238.610] (-10247.582) -- 0:00:26
903000 -- (-10248.872) (-10241.717) [-10235.759] (-10239.956) * (-10244.308) [-10244.948] (-10237.693) (-10251.878) -- 0:00:26
904000 -- [-10237.468] (-10239.051) (-10238.150) (-10242.960) * (-10246.868) (-10237.983) [-10240.706] (-10243.752) -- 0:00:26
905000 -- (-10242.226) [-10232.992] (-10241.851) (-10234.830) * (-10246.940) (-10250.249) (-10243.490) [-10240.846] -- 0:00:25
Average standard deviation of split frequencies: 0.005868
906000 -- [-10235.133] (-10250.016) (-10250.071) (-10240.980) * (-10242.088) (-10238.160) (-10242.483) [-10238.302] -- 0:00:25
907000 -- (-10237.049) [-10240.914] (-10252.959) (-10236.219) * (-10240.608) (-10244.618) [-10240.342] (-10247.455) -- 0:00:25
908000 -- [-10246.662] (-10233.133) (-10244.504) (-10240.677) * (-10239.588) [-10240.845] (-10255.373) (-10236.981) -- 0:00:24
909000 -- [-10240.316] (-10237.245) (-10240.512) (-10240.717) * [-10245.640] (-10245.386) (-10234.632) (-10246.847) -- 0:00:24
910000 -- (-10242.997) (-10248.577) [-10242.677] (-10240.253) * (-10246.864) (-10236.559) [-10240.065] (-10241.799) -- 0:00:24
Average standard deviation of split frequencies: 0.006154
911000 -- [-10241.559] (-10240.140) (-10251.619) (-10246.444) * [-10236.985] (-10239.332) (-10240.228) (-10237.667) -- 0:00:24
912000 -- (-10234.310) (-10245.004) [-10248.646] (-10244.427) * [-10240.466] (-10239.121) (-10242.287) (-10244.578) -- 0:00:23
913000 -- (-10254.175) [-10242.707] (-10239.039) (-10240.324) * (-10237.073) [-10238.470] (-10237.533) (-10239.227) -- 0:00:23
914000 -- [-10245.010] (-10246.518) (-10231.033) (-10238.933) * [-10239.099] (-10240.561) (-10241.896) (-10244.497) -- 0:00:23
915000 -- (-10243.411) (-10236.194) (-10247.463) [-10237.982] * (-10238.510) [-10238.287] (-10253.298) (-10240.035) -- 0:00:23
Average standard deviation of split frequencies: 0.006094
916000 -- (-10244.484) [-10235.679] (-10244.688) (-10247.105) * (-10241.781) [-10237.390] (-10248.032) (-10243.223) -- 0:00:22
917000 -- (-10241.700) [-10232.497] (-10231.655) (-10243.212) * (-10239.340) (-10248.952) (-10239.960) [-10241.081] -- 0:00:22
918000 -- (-10244.643) [-10242.629] (-10231.720) (-10249.533) * (-10244.507) (-10244.659) (-10240.291) [-10234.025] -- 0:00:22
919000 -- (-10248.399) (-10241.708) [-10243.385] (-10241.334) * (-10241.798) (-10250.150) (-10235.615) [-10238.591] -- 0:00:21
920000 -- [-10239.109] (-10246.367) (-10239.789) (-10239.998) * (-10244.675) (-10238.387) [-10239.170] (-10244.399) -- 0:00:21
Average standard deviation of split frequencies: 0.005875
921000 -- [-10251.041] (-10238.013) (-10238.339) (-10251.566) * (-10239.518) (-10240.559) (-10254.194) [-10242.264] -- 0:00:21
922000 -- (-10244.285) (-10235.805) [-10234.674] (-10240.934) * (-10240.190) (-10255.813) [-10240.111] (-10240.992) -- 0:00:21
923000 -- (-10249.981) [-10236.869] (-10242.046) (-10239.195) * (-10246.250) (-10245.743) (-10237.492) [-10231.570] -- 0:00:20
924000 -- [-10238.592] (-10242.016) (-10239.427) (-10245.176) * (-10240.498) [-10236.077] (-10236.598) (-10234.579) -- 0:00:20
925000 -- (-10242.372) (-10239.755) (-10238.352) [-10238.955] * [-10238.649] (-10241.841) (-10238.231) (-10238.853) -- 0:00:20
Average standard deviation of split frequencies: 0.006243
926000 -- (-10248.808) (-10236.325) [-10240.232] (-10238.222) * (-10240.613) [-10237.884] (-10239.466) (-10233.452) -- 0:00:20
927000 -- (-10247.786) (-10237.481) [-10252.105] (-10251.602) * (-10239.998) [-10237.155] (-10244.245) (-10237.816) -- 0:00:19
928000 -- [-10234.130] (-10242.686) (-10249.424) (-10245.821) * (-10239.060) (-10240.714) (-10242.269) [-10241.957] -- 0:00:19
929000 -- (-10244.006) (-10248.046) (-10239.869) [-10243.329] * (-10237.286) (-10241.762) (-10242.787) [-10236.371] -- 0:00:19
930000 -- (-10232.563) (-10241.867) [-10240.891] (-10241.517) * (-10237.629) (-10246.760) [-10239.573] (-10238.187) -- 0:00:18
Average standard deviation of split frequencies: 0.005945
931000 -- (-10239.494) (-10237.752) (-10239.538) [-10245.061] * (-10242.747) (-10242.745) (-10250.492) [-10238.710] -- 0:00:18
932000 -- [-10242.731] (-10240.501) (-10243.336) (-10238.546) * (-10238.446) (-10243.201) [-10242.388] (-10239.377) -- 0:00:18
933000 -- (-10249.021) (-10245.521) (-10242.156) [-10230.168] * (-10242.562) (-10242.811) [-10248.672] (-10237.708) -- 0:00:18
934000 -- (-10242.386) [-10236.661] (-10242.922) (-10245.878) * (-10241.198) (-10239.234) [-10238.751] (-10242.935) -- 0:00:17
935000 -- (-10237.812) (-10234.143) (-10243.851) [-10245.101] * (-10242.762) (-10245.185) (-10236.559) [-10231.908] -- 0:00:17
Average standard deviation of split frequencies: 0.005708
936000 -- [-10239.468] (-10245.413) (-10242.604) (-10236.654) * (-10249.716) (-10246.095) [-10244.686] (-10237.589) -- 0:00:17
937000 -- (-10236.983) [-10234.439] (-10241.137) (-10240.673) * (-10241.439) (-10245.505) [-10236.337] (-10238.987) -- 0:00:17
938000 -- [-10241.290] (-10243.380) (-10238.814) (-10239.841) * (-10240.755) [-10241.679] (-10233.106) (-10241.278) -- 0:00:16
939000 -- (-10242.194) (-10240.564) [-10237.130] (-10239.975) * (-10248.228) (-10241.865) [-10237.872] (-10241.883) -- 0:00:16
940000 -- (-10237.516) (-10235.804) (-10243.073) [-10239.061] * (-10242.578) (-10240.511) [-10234.516] (-10238.970) -- 0:00:16
Average standard deviation of split frequencies: 0.005847
941000 -- [-10237.913] (-10240.267) (-10249.752) (-10244.175) * (-10237.854) [-10233.374] (-10239.422) (-10237.138) -- 0:00:15
942000 -- (-10237.845) (-10238.866) (-10238.872) [-10240.870] * (-10236.722) (-10244.850) (-10238.273) [-10241.262] -- 0:00:15
943000 -- [-10242.613] (-10236.626) (-10237.140) (-10238.546) * [-10231.996] (-10233.046) (-10234.414) (-10244.329) -- 0:00:15
944000 -- [-10236.827] (-10237.069) (-10244.619) (-10238.578) * (-10245.802) [-10237.980] (-10239.266) (-10237.504) -- 0:00:15
945000 -- (-10235.698) (-10243.937) (-10237.221) [-10239.551] * (-10237.130) (-10242.650) [-10236.979] (-10243.437) -- 0:00:14
Average standard deviation of split frequencies: 0.005786
946000 -- (-10246.964) [-10232.601] (-10241.958) (-10240.741) * (-10237.370) [-10241.603] (-10244.033) (-10238.776) -- 0:00:14
947000 -- [-10239.082] (-10247.403) (-10248.808) (-10239.638) * (-10246.126) (-10242.445) (-10243.030) [-10235.164] -- 0:00:14
948000 -- [-10235.769] (-10240.679) (-10247.065) (-10246.612) * (-10239.887) (-10237.049) [-10244.544] (-10240.344) -- 0:00:14
949000 -- (-10236.567) (-10252.367) [-10235.235] (-10241.001) * (-10242.180) (-10237.366) [-10235.919] (-10241.210) -- 0:00:13
950000 -- (-10236.930) (-10239.163) [-10242.359] (-10237.327) * [-10241.957] (-10243.947) (-10242.317) (-10248.135) -- 0:00:13
Average standard deviation of split frequencies: 0.005537
951000 -- (-10246.659) [-10238.241] (-10243.616) (-10238.638) * (-10246.241) (-10237.042) [-10241.397] (-10238.301) -- 0:00:13
952000 -- [-10242.627] (-10242.300) (-10241.262) (-10248.938) * (-10242.135) [-10242.770] (-10237.303) (-10236.054) -- 0:00:13
953000 -- [-10240.717] (-10254.975) (-10244.669) (-10239.283) * (-10242.932) (-10233.819) (-10243.038) [-10244.266] -- 0:00:12
954000 -- (-10242.029) [-10237.333] (-10235.065) (-10250.338) * [-10237.586] (-10237.964) (-10245.659) (-10237.996) -- 0:00:12
955000 -- [-10243.323] (-10245.405) (-10240.656) (-10240.358) * (-10238.767) (-10256.379) (-10243.352) [-10240.827] -- 0:00:12
Average standard deviation of split frequencies: 0.005561
956000 -- (-10243.802) [-10245.195] (-10241.642) (-10236.841) * (-10245.199) (-10241.355) (-10243.591) [-10234.350] -- 0:00:11
957000 -- (-10247.925) (-10251.585) [-10237.665] (-10239.954) * (-10248.708) [-10240.498] (-10250.649) (-10245.629) -- 0:00:11
958000 -- (-10254.148) (-10239.261) [-10239.564] (-10230.736) * [-10236.061] (-10255.137) (-10248.221) (-10244.509) -- 0:00:11
959000 -- (-10252.944) (-10238.662) [-10234.219] (-10237.515) * (-10238.791) (-10257.406) (-10238.514) [-10236.038] -- 0:00:11
960000 -- (-10244.463) (-10243.862) (-10241.805) [-10234.819] * (-10246.469) (-10239.876) [-10240.532] (-10234.809) -- 0:00:10
Average standard deviation of split frequencies: 0.005452
961000 -- [-10240.085] (-10243.333) (-10237.953) (-10236.049) * (-10246.362) (-10251.404) [-10240.452] (-10243.683) -- 0:00:10
962000 -- (-10245.306) [-10238.138] (-10246.517) (-10238.945) * (-10242.065) (-10235.671) [-10234.198] (-10238.957) -- 0:00:10
963000 -- (-10239.670) (-10238.983) (-10245.763) [-10241.202] * (-10236.209) [-10241.782] (-10241.681) (-10235.643) -- 0:00:10
964000 -- (-10243.225) (-10241.435) (-10238.552) [-10238.384] * (-10242.756) (-10242.242) [-10236.433] (-10242.270) -- 0:00:09
965000 -- [-10236.975] (-10248.564) (-10240.701) (-10245.473) * (-10240.620) (-10247.664) [-10242.150] (-10234.909) -- 0:00:09
Average standard deviation of split frequencies: 0.005422
966000 -- (-10242.375) (-10245.243) (-10241.405) [-10244.598] * (-10243.938) (-10231.908) (-10245.070) [-10236.954] -- 0:00:09
967000 -- (-10240.775) (-10241.256) (-10239.916) [-10242.632] * [-10243.185] (-10238.475) (-10241.381) (-10243.016) -- 0:00:08
968000 -- [-10242.661] (-10259.002) (-10235.046) (-10240.998) * (-10239.370) (-10243.699) (-10245.904) [-10239.626] -- 0:00:08
969000 -- (-10244.133) [-10241.932] (-10242.648) (-10236.669) * (-10233.778) (-10240.871) [-10234.934] (-10234.306) -- 0:00:08
970000 -- (-10242.958) [-10242.794] (-10237.477) (-10242.529) * (-10234.820) (-10244.182) [-10240.332] (-10249.392) -- 0:00:08
Average standard deviation of split frequencies: 0.005207
971000 -- (-10242.156) [-10234.161] (-10239.488) (-10244.041) * (-10238.176) (-10244.689) [-10243.179] (-10250.699) -- 0:00:07
972000 -- (-10242.353) (-10245.060) [-10241.416] (-10236.105) * (-10243.670) (-10246.634) [-10241.176] (-10252.063) -- 0:00:07
973000 -- [-10244.786] (-10240.242) (-10238.876) (-10240.336) * (-10242.786) [-10236.815] (-10243.151) (-10241.143) -- 0:00:07
974000 -- (-10242.220) [-10242.322] (-10237.485) (-10247.300) * (-10237.646) (-10239.613) [-10237.938] (-10243.080) -- 0:00:07
975000 -- (-10233.355) (-10239.409) [-10243.849] (-10242.556) * (-10246.664) [-10244.573] (-10243.143) (-10239.025) -- 0:00:06
Average standard deviation of split frequencies: 0.004910
976000 -- (-10253.571) (-10233.300) (-10241.377) [-10234.209] * (-10240.723) (-10246.021) (-10238.432) [-10236.483] -- 0:00:06
977000 -- (-10241.436) (-10244.668) (-10241.888) [-10246.243] * (-10247.385) [-10248.810] (-10246.395) (-10241.327) -- 0:00:06
978000 -- (-10246.973) (-10243.192) [-10241.924] (-10251.559) * [-10237.589] (-10240.790) (-10238.061) (-10250.525) -- 0:00:05
979000 -- (-10247.279) (-10247.672) [-10237.024] (-10236.287) * [-10242.142] (-10240.259) (-10245.288) (-10241.745) -- 0:00:05
980000 -- [-10236.823] (-10246.011) (-10238.740) (-10238.882) * (-10236.115) (-10235.209) (-10240.952) [-10229.969] -- 0:00:05
Average standard deviation of split frequencies: 0.005033
981000 -- (-10246.175) (-10240.612) [-10234.031] (-10235.524) * (-10242.743) (-10238.498) (-10250.612) [-10241.418] -- 0:00:05
982000 -- [-10238.253] (-10253.471) (-10244.628) (-10244.079) * (-10250.172) (-10241.537) (-10239.544) [-10239.857] -- 0:00:04
983000 -- (-10241.349) (-10247.438) [-10244.751] (-10238.825) * (-10233.238) (-10241.588) (-10245.779) [-10233.264] -- 0:00:04
984000 -- (-10238.547) [-10239.276] (-10246.519) (-10234.530) * (-10239.909) [-10236.172] (-10236.490) (-10241.111) -- 0:00:04
985000 -- [-10239.793] (-10239.079) (-10247.932) (-10244.047) * [-10242.553] (-10236.730) (-10241.064) (-10241.750) -- 0:00:04
Average standard deviation of split frequencies: 0.005118
986000 -- (-10241.947) [-10242.733] (-10245.797) (-10243.577) * (-10241.781) (-10238.479) (-10233.823) [-10234.327] -- 0:00:03
987000 -- (-10236.960) (-10252.000) (-10246.781) [-10244.141] * (-10237.584) [-10237.486] (-10247.277) (-10238.012) -- 0:00:03
988000 -- [-10238.036] (-10250.777) (-10242.182) (-10244.839) * (-10238.111) (-10241.766) (-10240.512) [-10240.479] -- 0:00:03
989000 -- (-10239.235) [-10251.788] (-10248.437) (-10233.811) * (-10241.977) (-10241.985) (-10237.991) [-10236.488] -- 0:00:02
990000 -- (-10247.031) [-10230.824] (-10238.707) (-10237.201) * (-10239.450) (-10241.711) (-10238.552) [-10236.151] -- 0:00:02
Average standard deviation of split frequencies: 0.004944
991000 -- [-10242.521] (-10243.807) (-10236.655) (-10239.371) * (-10245.384) (-10235.634) [-10246.554] (-10252.880) -- 0:00:02
992000 -- (-10245.585) (-10236.885) (-10236.844) [-10237.788] * [-10235.975] (-10239.259) (-10238.430) (-10248.306) -- 0:00:02
993000 -- (-10243.573) [-10245.374] (-10242.464) (-10248.498) * (-10249.859) [-10240.688] (-10240.808) (-10244.184) -- 0:00:01
994000 -- (-10240.809) (-10240.179) (-10242.847) [-10237.623] * (-10248.358) [-10239.728] (-10241.235) (-10249.811) -- 0:00:01
995000 -- [-10237.572] (-10234.412) (-10239.911) (-10240.691) * [-10233.653] (-10240.478) (-10243.706) (-10237.532) -- 0:00:01
Average standard deviation of split frequencies: 0.005259
996000 -- (-10244.459) (-10244.624) [-10234.893] (-10242.624) * (-10241.116) [-10236.620] (-10244.255) (-10240.319) -- 0:00:01
997000 -- (-10233.726) (-10236.514) [-10235.579] (-10241.897) * [-10242.835] (-10242.510) (-10239.265) (-10235.063) -- 0:00:00
998000 -- [-10239.402] (-10240.496) (-10241.604) (-10249.908) * (-10242.548) (-10237.370) (-10238.157) [-10232.410] -- 0:00:00
999000 -- [-10237.448] (-10245.114) (-10249.679) (-10239.038) * (-10243.782) (-10242.790) [-10236.577] (-10235.867) -- 0:00:00
1000000 -- (-10235.299) [-10243.165] (-10245.612) (-10234.356) * (-10238.329) (-10234.255) (-10243.254) [-10238.888] -- 0:00:00
Average standard deviation of split frequencies: 0.005182
Analysis completed in 4 mins 31 seconds
Analysis used 271.17 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -10227.14
Likelihood of best state for "cold" chain of run 2 was -10227.45
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
37.3 % ( 32 %) Dirichlet(Revmat{all})
55.4 % ( 52 %) Slider(Revmat{all})
7.0 % ( 15 %) Dirichlet(Pi{all})
20.1 % ( 27 %) Slider(Pi{all})
69.6 % ( 38 %) Multiplier(Alpha{1,2})
50.8 % ( 26 %) Multiplier(Alpha{3})
39.2 % ( 27 %) Slider(Pinvar{all})
93.2 % ( 94 %) ExtSPR(Tau{all},V{all})
94.2 % ( 89 %) ExtTBR(Tau{all},V{all})
96.4 % ( 94 %) NNI(Tau{all},V{all})
83.4 % ( 88 %) ParsSPR(Tau{all},V{all})
27.1 % ( 25 %) Multiplier(V{all})
63.3 % ( 70 %) Nodeslider(V{all})
25.1 % ( 25 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
37.4 % ( 34 %) Dirichlet(Revmat{all})
55.7 % ( 42 %) Slider(Revmat{all})
7.2 % ( 8 %) Dirichlet(Pi{all})
20.6 % ( 19 %) Slider(Pi{all})
69.9 % ( 49 %) Multiplier(Alpha{1,2})
51.7 % ( 31 %) Multiplier(Alpha{3})
39.2 % ( 22 %) Slider(Pinvar{all})
93.4 % ( 96 %) ExtSPR(Tau{all},V{all})
94.1 % ( 95 %) ExtTBR(Tau{all},V{all})
96.4 % ( 99 %) NNI(Tau{all},V{all})
83.3 % ( 79 %) ParsSPR(Tau{all},V{all})
27.1 % ( 33 %) Multiplier(V{all})
63.2 % ( 63 %) Nodeslider(V{all})
25.2 % ( 21 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.80 0.62 0.47
2 | 166503 0.81 0.64
3 | 166649 166631 0.82
4 | 167223 166284 166710
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.79 0.62 0.47
2 | 166456 0.81 0.65
3 | 166865 166729 0.83
4 | 166572 167090 166288
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -10237.88
| 1 21 1 1 2 2 |
| 1 1 |
| 1 2 2 1 1 2 2 1 21 21 * |
| 11 1 1 21 2 2 2|
| 1 2 22 1 2 1 1 1 2 1 1 |
| 2 1 2 1 1 1 1 21 1 |
|2 2 1 12 2 1 1 1 2 |
| 1 2 12 2 |
| 2 2 2 2 2 2 1 121 2 2 2 2 21 1 1|
| 2 2 2 2 2 2 22 1 2 2 2 |
| 1 112 2 1 1 1 1 |
|1 1 2 1 1 2 1 |
| 2 1 2 |
| |
| 1 2 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -10241.58
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -10234.43 -10247.97
2 -10234.49 -10248.59
--------------------------------------
TOTAL -10234.46 -10248.33
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.158456 0.000322 0.127022 0.195257 0.156952 1113.92 1231.36 1.000
r(A<->C){all} 0.038958 0.000248 0.012146 0.073098 0.037322 770.46 870.81 1.001
r(A<->G){all} 0.279579 0.001221 0.208966 0.344428 0.278469 702.64 784.55 1.000
r(A<->T){all} 0.045200 0.000130 0.024017 0.068328 0.044547 1073.13 1077.79 1.000
r(C<->G){all} 0.044962 0.000220 0.018997 0.075759 0.043610 841.03 899.91 1.000
r(C<->T){all} 0.534129 0.001597 0.463716 0.616886 0.534248 603.21 640.30 1.001
r(G<->T){all} 0.057172 0.000148 0.032631 0.080293 0.056525 1048.14 1101.51 1.000
pi(A){all} 0.250592 0.000029 0.240554 0.261593 0.250616 901.71 1011.59 1.000
pi(C){all} 0.168827 0.000021 0.160352 0.178360 0.168757 1093.57 1169.83 1.000
pi(G){all} 0.256898 0.000031 0.246232 0.267723 0.256937 873.80 954.89 1.002
pi(T){all} 0.323683 0.000036 0.312128 0.335154 0.323595 884.96 916.92 1.000
alpha{1,2} 0.040636 0.000766 0.000031 0.092809 0.037057 1197.69 1241.21 1.000
alpha{3} 4.542070 2.717312 1.858302 7.986196 4.260098 1456.43 1478.72 1.000
pinvar{all} 0.632882 0.001193 0.564459 0.693558 0.636113 1167.33 1260.95 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C1
2 -- C2
3 -- C3
4 -- C4
5 -- C5
6 -- C6
7 -- C7
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
-------------
1 -- .******
2 -- .*.....
3 -- ..*....
4 -- ...*...
5 -- ....*..
6 -- .....*.
7 -- ......*
8 -- .**.***
9 -- .*...*.
10 -- ..*..*.
11 -- ..*...*
12 -- .*..*..
13 -- ..*.*..
14 -- ....**.
15 -- ...*..*
16 -- .*....*
17 -- ..*****
18 -- .**....
19 -- ....*.*
20 -- .....**
21 -- ...**..
22 -- .*.****
23 -- .***.**
24 -- .*.*...
25 -- .*****.
-------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
8 617 0.205530 0.009893 0.198534 0.212525 2
9 372 0.123917 0.018844 0.110593 0.137242 2
10 359 0.119587 0.003298 0.117255 0.121919 2
11 341 0.113591 0.001413 0.112592 0.114590 2
12 340 0.113258 0.000942 0.112592 0.113924 2
13 340 0.113258 0.002827 0.111259 0.115256 2
14 339 0.112925 0.006124 0.108594 0.117255 2
15 339 0.112925 0.000471 0.112592 0.113258 2
16 338 0.112592 0.000942 0.111925 0.113258 2
17 337 0.112258 0.007066 0.107262 0.117255 2
18 334 0.111259 0.017901 0.098601 0.123917 2
19 329 0.109594 0.002355 0.107928 0.111259 2
20 319 0.106262 0.001413 0.105263 0.107262 2
21 306 0.101932 0.000942 0.101266 0.102598 2
22 305 0.101599 0.002355 0.099933 0.103264 2
23 305 0.101599 0.003298 0.099267 0.103931 2
24 301 0.100266 0.007066 0.095270 0.105263 2
25 291 0.096935 0.006124 0.092605 0.101266 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.148885 0.000317 0.116574 0.184568 0.147225 1.000 2
length{all}[2] 0.001091 0.000000 0.000348 0.002007 0.001029 1.000 2
length{all}[3] 0.000184 0.000000 0.000000 0.000553 0.000129 1.000 2
length{all}[4] 0.006968 0.000002 0.004608 0.009481 0.006888 1.000 2
length{all}[5] 0.000186 0.000000 0.000000 0.000576 0.000127 1.000 2
length{all}[6] 0.000186 0.000000 0.000000 0.000560 0.000130 1.000 2
length{all}[7] 0.000176 0.000000 0.000000 0.000507 0.000123 1.000 2
length{all}[8] 0.000389 0.000000 0.000000 0.001158 0.000268 1.004 2
length{all}[9] 0.000180 0.000000 0.000000 0.000554 0.000130 0.999 2
length{all}[10] 0.000173 0.000000 0.000001 0.000522 0.000116 0.998 2
length{all}[11] 0.000174 0.000000 0.000001 0.000502 0.000123 0.997 2
length{all}[12] 0.000183 0.000000 0.000000 0.000538 0.000127 0.997 2
length{all}[13] 0.000190 0.000000 0.000001 0.000545 0.000143 1.004 2
length{all}[14] 0.000201 0.000000 0.000001 0.000587 0.000140 0.997 2
length{all}[15] 0.000173 0.000000 0.000000 0.000511 0.000120 1.003 2
length{all}[16] 0.000182 0.000000 0.000000 0.000576 0.000127 0.999 2
length{all}[17] 0.000256 0.000000 0.000002 0.000662 0.000196 0.997 2
length{all}[18] 0.000182 0.000000 0.000001 0.000562 0.000121 0.997 2
length{all}[19] 0.000191 0.000000 0.000001 0.000542 0.000134 1.006 2
length{all}[20] 0.000177 0.000000 0.000001 0.000533 0.000116 0.997 2
length{all}[21] 0.000180 0.000000 0.000000 0.000585 0.000114 0.997 2
length{all}[22] 0.000200 0.000000 0.000001 0.000607 0.000136 0.997 2
length{all}[23] 0.000181 0.000000 0.000001 0.000548 0.000129 1.004 2
length{all}[24] 0.000175 0.000000 0.000000 0.000511 0.000125 0.997 2
length{all}[25] 0.000174 0.000000 0.000000 0.000517 0.000115 0.999 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.005182
Maximum standard deviation of split frequencies = 0.018844
Average PSRF for parameter values (excluding NA and >10.0) = 0.999
Maximum PSRF for parameter values = 1.006
Clade credibility values:
/------------------------------------------------------------------------ C1 (1)
|
|------------------------------------------------------------------------ C2 (2)
|
|------------------------------------------------------------------------ C3 (3)
|
+------------------------------------------------------------------------ C4 (4)
|
|------------------------------------------------------------------------ C5 (5)
|
|------------------------------------------------------------------------ C6 (6)
|
\------------------------------------------------------------------------ C7 (7)
Phylogram (based on average branch lengths):
/------------------------------------------------------------------------ C1 (1)
|
|- C2 (2)
|
| C3 (3)
|
+--- C4 (4)
|
| C5 (5)
|
| C6 (6)
|
\ C7 (7)
|--------| 0.020 expected changes per site
Calculating tree probabilities...
Credible sets of trees (899 trees sampled):
50 % credible set contains 265 trees
90 % credible set contains 684 trees
95 % credible set contains 759 trees
99 % credible set contains 869 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Wed Nov 02 20:11:56 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.14 sec, SCORE=1000, Nseq=7, Len=2010
C1 GKKVEFNDKPKVRKIPSTRKIKITFALDATFDSVLSKACSEFEVDKDVTL
C2 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
C3 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
C4 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
C5 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
C6 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
C7 GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL
**** *******:::******** **************************
C1 DELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEV
C2 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERVVDDYVYLFDEGGEEV
C3 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEV
C4 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEV
C5 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEV
C6 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEV
C7 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEV
*********************.**********:*:..**********:**
C1 IAPRMYCSFSAPDDEDCVAADVVDADENQDDDAEDSAVLVADTQEEDGVA
C2 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
C3 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
C4 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
C5 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
C6 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
C7 IASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVA
**.********* ******:*** *********:*..*************
C1 KGQVE-ADSEICVAHTGSQEELAEPDAVGSQTPIASAEETEVGEASDREG
C2 KEQVDSADSEICVAHTGGQ-EMTEHDAVGSQTPIASAEETEVGEACDREG
C3 KEQVDSADSEICVAHTGGQ-EMTEPDAVGSQTPIASAEETEVGEACDREG
C4 REQVDSADSEICVAHTGGQ-EMTEPDVVGSQTPIASAEETEVGEACDREG
C5 KEQVDSADSEICVAHTGGQ-EMTEPDAVGSQTPIASAEETEVGEACDREG
C6 KEQVDSADSEICVAHTGGQ-EMTEPDAVGSQTPIASAEETEVGEACDREG
C7 KEQVDSADSEICVAHTGGQ-EMTEPDAVGSQTPIASAEETEVGEACDREG
: **: ***********.* *::* *.******************.****
C1 IAEAKATVCADAVDACPDQVEAFEIEKVEDSILDELQTELNAPADKTYED
C2 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
C3 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
C4 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
C5 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
C6 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
C7 IAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYED
***.********:**********:*********.****************
C1 VLAFDAVCSEALSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C2 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C3 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C4 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C5 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C6 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
C7 VLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
******: **:***************************************
C1 SLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSIILPQGGYVADFA
C2 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
C3 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
C4 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
C5 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
C6 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
C7 SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFA
********* ***********************.****************
C1 YFFLSQCSFKAYANWRCLECDMELKLQGLDAMFFYGDVVSHMCKCGNSMT
C2 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMT
C3 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMT
C4 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAVFFYGDVVSHMCKCGNSMT
C5 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMT
C6 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMT
C7 YFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMT
**********.:******:*.**********:******************
C1 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVEGKQ
C2 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
C3 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
C4 LLSADIPYTFDFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
C5 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
C6 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
C7 LLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQ
*********:.***********************************:***
C1 IDGKVVTKFIGDKFDFMVGYGMTFSMSPFELAQLYGSCITPNVCFVKGDV
C2 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
C3 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
C4 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
C5 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
C6 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
C7 IDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDV
********* *********:**********:*******************
C1 IKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKAQG
C2 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
C3 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
C4 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
C5 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
C6 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
C7 IKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQG
***:* *.***********************: **.***:**:*******
C1 VCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
C2 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
C3 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
C4 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDN
C5 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
C6 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
C7 VCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
***** ****:********************::*****************
C1 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C2 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C3 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C4 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C5 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C6 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
C7 VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTS
**************************************************
C1 VAGTKALSLQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
C2 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
C3 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
C4 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESSFVSSYDVLQEVEALRH
C5 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
C6 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
C7 VAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRH
********:************************.****************
C1 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGGIFVS
C2 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
C3 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
C4 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
C5 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
C6 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
C7 DIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVS
********************************************* :***
C1 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C2 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C3 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C4 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C5 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C6 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
C7 SQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGE
**************************************************
C1 VFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEADLVAVKDAFGF
C2 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
C3 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
C4 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
C5 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
C6 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
C7 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGF
************************:*********.** ***.********
C1 DEPQLLKYYTMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C2 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C3 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C4 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C5 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C6 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
C7 DEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
******:**:****************************************
C1 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREA
C2 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREA
C3 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREA
C4 FPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREA
C5 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREA
C6 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREA
C7 FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREA
******:.. ***************************** **:** ****
C1 DLSGATCNLEFVCKCGMKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCG
C2 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
C3 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
C4 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
C5 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
C6 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
C7 DLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG
*******:***:****:*******************..**:*********
C1 SKLVHCTQFNVPFLICSNTPEGRKLPDDVVAANIFTGGSVGHYTHVKCKP
C2 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
C3 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
C4 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
C5 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
C6 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
C7 DKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKP
.*********************:***************************
C1 KYQLYDACNVNKVSEAKGNFTDCLYLKNLKQTFSSVLTTFYLDDVKCVEY
C2 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
C3 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
C4 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
C5 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
C6 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
C7 KYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAY
**********.****************************:******** *
C1 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVDGVYTNFKLVGHSIAEKLNA
C2 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
C3 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
C4 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
C5 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
C6 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
C7 KPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNA
******************************:***********.*******
C1 KLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSSGCITFGKPVVW
C2 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
C3 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
C4 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
C5 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
C6 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
C7 KLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
**********:***************************.**:******:*
C1 LGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDKGPVPAAVLVTG-
C2 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
C3 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
C4 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
C5 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
C6 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
C7 RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGA
************************************: ***:******
C1 VPGADASA---GAGIAKEQKACASASVEDQVVTEVRQEPSVSAADVKEVK
C2 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVK
C3 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVK
C4 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKKSSVTTVAVKEVK
C5 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVK
C6 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVK
C7 ASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVK
..****** .* ********* *****:* *.::..**::. *****
C1 LNGVKKPVKVEGSVVVNDPTSETKVVKSLSIVDVYDMFLTGCKYVVWTAN
C2 LNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
C3 LNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
C4 LNGVKKPVKWNCSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
C5 LNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
C6 LNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
C7 LNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTAN
********* : ******************************:*******
C1 ELSRLVNSPTVREYVKWGMGKIVTPAKLLLLRDEKQEFVAPKVVKAKAIA
C2 ELSRLINSPTVREYVKWGMSNLIIPANLLLLRDEKQEFVAPKVVKAKAIA
C3 ELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIA
C4 ELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIA
C5 ELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIA
C6 ELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIA
C7 ELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIA
*****:*************.::: **:***********************
C1 CYCAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C2 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C3 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C4 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C5 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C6 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
C7 CYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTF
** ***********************************************
C1 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPTFVGQIVAW
C2 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
C3 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
C4 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
C5 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
C6 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
C7 NWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
***************************************** ********
C1 FKTTFGVSTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
C2 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
C3 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
C4 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYESINV
C5 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
C6 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
C7 VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINV
.****** *************************************::***
C1 VQHVVDRRLSFDYISLFKLVVELVIGYSLYTVCFYPLFVLIGMQLLTTWL
C2 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
C3 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
C4 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
C5 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
C6 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
C7 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWL
********:*******************************:*********
C1 PEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C2 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C3 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C4 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C5 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C6 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
C7 PEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMY
****** *******************************************
C1 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C2 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C3 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C4 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C5 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C6 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
C7 GCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC
**************************************************
C1 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMR
C2 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
C3 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
C4 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
C5 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
C6 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
C7 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMR
*************************************** **********
C1 LFYERDGQRVYDDVNASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C2 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C3 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C4 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C5 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C6 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
C7 LFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
**************.***********************************
C1 LGAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLNVLDV
C2 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDV
C3 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDV
C4 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHLDV
C5 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDV
C6 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDV
C7 LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDV
*.*************************************** *** ***
C1 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITK
C2 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
C3 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
C4 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
C5 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
C6 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
C7 DRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITK
*****************************:********************
C1 SVMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQANV
C2 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
C3 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
C4 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
C5 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
C6 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
C7 SVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNV
***:******:.***********************************:**
C1 AKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPI
C2 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
C3 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
C4 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
C5 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
C6 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
C7 AKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPI
****************************** *******************
C1 LTTPFSLKGG
C2 LTTPFSLKGG
C3 LTTPFSLKGG
C4 LTTPFSLKGG
C5 LTTPFSLKGG
C6 LTTPFSLKGG
C7 LTTPFSLKGG
**********
-- Starting log on Thu Nov 03 02:14:54 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus.result/original_alignment/codeml,A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C1 6030 sites
reading seq# 2 C2 6030 sites
reading seq# 3 C3 6030 sites
reading seq# 4 C4 6030 sites
reading seq# 5 C5 6030 sites
reading seq# 6 C6 6030 sites
reading seq# 7 C7 6030 sitesns = 7 ls = 6030
Reading sequences, sequential format..
Reading seq # 1: C1
Reading seq # 2: C2
Reading seq # 3: C3
Reading seq # 4: C4
Reading seq # 5: C5
Reading seq # 6: C6
Reading seq # 7: C7
Sites with gaps or missing data are removed.
15 ambiguity characters in seq. 1
6 ambiguity characters in seq. 2
6 ambiguity characters in seq. 3
6 ambiguity characters in seq. 4
6 ambiguity characters in seq. 5
6 ambiguity characters in seq. 6
6 ambiguity characters in seq. 7
7 sites are removed. 113 156 170 1250 1259 1260 1261
Sequences read..
Counting site patterns.. 0:00
Compressing, 279 patterns at 2003 / 2003 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 279 patterns at 2003 / 2003 sites (100.0%), 0:00
Counting codons..
168 bytes for distance
272304 bytes for conP
24552 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(1, 2, 3, 4, 5, 6, 7); MP score: 396
0.012917 0.084669 0.092968 0.013473 0.098220 0.084927 0.053636 0.300000 0.594053 0.275017
ntime & nrate & np: 7 2 10
Bounds (np=10):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 11.820298
np = 10
lnL0 = -11790.777487
Iterating by ming2
Initial: fx= 11790.777487
x= 0.01292 0.08467 0.09297 0.01347 0.09822 0.08493 0.05364 0.30000 0.59405 0.27502
1 h-m-p 0.0000 0.0000 29508.9233 +YCYCCCC 10813.880229 6 0.0000 26 | 0/10
2 h-m-p 0.0000 0.0000 3942.3471 ++ 10564.861979 m 0.0000 39 | 1/10
3 h-m-p 0.0000 0.0000 265820.5397 ++ 10349.475601 m 0.0000 52 | 2/10
4 h-m-p 0.0000 0.0000 5752.5193 ++ 10316.290512 m 0.0000 65 | 3/10
5 h-m-p 0.0000 0.0000 90162.5728 ++ 10302.803413 m 0.0000 78 | 4/10
6 h-m-p 0.0000 0.0000 27826.9803 ++ 10128.742162 m 0.0000 91 | 5/10
7 h-m-p 0.0000 0.0001 3106.6962 YCYCCC 10055.282503 5 0.0001 112 | 5/10
8 h-m-p 0.0116 0.0603 19.4777 CYCCC 10016.465958 4 0.0081 132 | 4/10
9 h-m-p 0.0002 0.0017 698.9698 CYCCC 10011.799319 4 0.0000 153 | 4/10
10 h-m-p 0.1003 0.5015 0.0452 YCYCCC 10009.493735 5 0.2678 174 | 4/10
11 h-m-p 0.5226 8.0000 0.0232 ++ 9972.797900 m 8.0000 193 | 4/10
12 h-m-p 0.1268 0.6342 0.2960 ++ 9951.016893 m 0.6342 212 | 5/10
13 h-m-p 1.2162 6.0810 0.1338 YYCC 9944.120061 3 1.0507 235 | 4/10
14 h-m-p 0.0003 0.0016 418.7646 -CC 9944.071380 1 0.0000 256 | 4/10
15 h-m-p 0.3955 7.6811 0.0264 ++YYYCCC 9922.944770 5 5.8211 278 | 4/10
16 h-m-p 0.3663 1.8314 0.0466 YCYCCC 9906.026255 5 0.9934 305 | 4/10
17 h-m-p 0.4630 2.3150 0.0446 YCYCCC 9903.742667 5 0.2527 332 | 4/10
18 h-m-p 0.2798 8.0000 0.0403 YCCC 9901.202493 3 0.6593 356 | 4/10
19 h-m-p 0.4354 8.0000 0.0610 ++YCCC 9892.622344 3 4.5919 382 | 4/10
20 h-m-p 1.5843 8.0000 0.1768 YCCCC 9882.216977 4 3.0385 408 | 4/10
21 h-m-p 1.6000 8.0000 0.1176 YCCC 9876.328540 3 2.5388 432 | 4/10
22 h-m-p 1.6000 8.0000 0.0930 CCCC 9874.329528 3 1.9476 457 | 4/10
23 h-m-p 1.6000 8.0000 0.0681 +CC 9870.316253 1 6.3990 479 | 4/10
24 h-m-p 0.7191 3.5956 0.1720 +CCC 9865.851971 2 2.4496 503 | 4/10
25 h-m-p 0.3449 1.7245 0.0509 ++ 9865.080679 m 1.7245 522 | 5/10
26 h-m-p 0.0519 1.7207 1.6210 YC 9865.051755 1 0.0086 542 | 5/10
27 h-m-p 0.2346 8.0000 0.0592 ++YC 9864.963515 1 2.4709 558 | 5/10
28 h-m-p 1.6000 8.0000 0.0114 C 9864.957444 0 1.8300 576 | 5/10
29 h-m-p 1.6000 8.0000 0.0021 YC 9864.954630 1 2.9004 595 | 5/10
30 h-m-p 1.6000 8.0000 0.0020 C 9864.954250 0 1.7883 613 | 5/10
31 h-m-p 1.6000 8.0000 0.0021 Y 9864.954228 0 1.0840 631 | 5/10
32 h-m-p 1.6000 8.0000 0.0000 Y 9864.954228 0 0.9712 649 | 5/10
33 h-m-p 1.6000 8.0000 0.0000 Y 9864.954228 0 1.6000 667 | 5/10
34 h-m-p 1.6000 8.0000 0.0000 ---------------Y 9864.954228 0 0.0000 700
Out..
lnL = -9864.954228
701 lfun, 2103 eigenQcodon, 9814 P(t)
end of tree file.
Time used: 0:04
Model 2: PositiveSelection
TREE # 1
(1, 2, 3, 4, 5, 6, 7); MP score: 396
0.065565 0.044103 0.074878 0.097449 0.039080 0.040787 0.031074 3.460118 1.405901 0.593411 0.398233 1.473569
ntime & nrate & np: 7 3 12
Bounds (np=12):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 4.046450
np = 12
lnL0 = -10686.454806
Iterating by ming2
Initial: fx= 10686.454806
x= 0.06557 0.04410 0.07488 0.09745 0.03908 0.04079 0.03107 3.46012 1.40590 0.59341 0.39823 1.47357
1 h-m-p 0.0000 0.0000 6096.3904 ++ 10205.181240 m 0.0000 17 | 1/12
2 h-m-p 0.0000 0.0000 7039.3741 ++ 10142.151968 m 0.0000 32 | 2/12
3 h-m-p 0.0000 0.0000 17963.9186 ++ 10134.012891 m 0.0000 47 | 3/12
4 h-m-p 0.0000 0.0000 31512.5682 ++ 10050.677051 m 0.0000 62 | 4/12
5 h-m-p 0.0001 0.0011 98.2304 +YCYYYCCC 10023.226681 7 0.0007 88 | 4/12
6 h-m-p 0.0005 0.0026 150.5548 ++ 9966.551246 m 0.0026 103 | 5/12
7 h-m-p 0.0012 0.0061 28.1926 +YYYYYCYCCC 9948.979784 9 0.0051 131 | 5/12
8 h-m-p 0.0023 0.0115 44.7487 ++ 9932.811976 m 0.0115 146 | 6/12
9 h-m-p 0.0207 8.0000 13.3091 +YYCCC 9913.407640 4 0.1220 168 | 6/12
10 h-m-p 0.2780 1.3899 0.3812 YCCC 9912.797550 3 0.1381 188 | 6/12
11 h-m-p 0.1664 8.0000 0.3163 ---------------.. | 6/12
12 h-m-p 0.0000 0.0000 659.5379 CYCCC 9912.149455 4 0.0000 250 | 6/12
13 h-m-p 0.0000 0.0001 575.0238 +YYYYY 9907.600731 4 0.0000 270 | 6/12
14 h-m-p 0.0001 0.0346 1501.5606 CYCC 9903.289351 3 0.0000 290 | 6/12
15 h-m-p 0.0026 1.2996 64.8485 +CCCC 9870.508222 3 0.0142 312 | 6/12
16 h-m-p 0.1629 0.8885 5.6492 CYCCCC 9865.116349 5 0.2766 336 | 6/12
17 h-m-p 1.6000 8.0000 0.0160 YCC 9864.960439 2 1.2150 354 | 5/12
18 h-m-p 0.0160 8.0000 1.7115 +YC 9864.894199 1 0.0466 377 | 5/12
19 h-m-p 0.2052 8.0000 0.3887 +YCYC 9864.651257 3 1.5986 397 | 4/12
20 h-m-p 0.0008 0.0576 760.1892 YYYC 9864.562569 3 0.0007 422 | 4/12
21 h-m-p 1.0832 8.0000 0.5086 CYCCC 9864.421379 4 1.6057 444 | 4/12
22 h-m-p 1.5733 8.0000 0.5190 YC 9864.276232 1 0.8141 468 | 4/12
23 h-m-p 1.6000 8.0000 0.1713 CC 9864.202738 1 1.4742 493 | 4/12
24 h-m-p 1.1248 8.0000 0.2245 YC 9864.185661 1 0.7279 517 | 4/12
25 h-m-p 1.3621 8.0000 0.1200 YC 9864.129010 1 2.4995 541 | 4/12
26 h-m-p 1.6000 8.0000 0.1775 CCCC 9864.055671 3 2.1180 570 | 4/12
27 h-m-p 1.6000 8.0000 0.2177 YC 9864.029471 1 0.7833 594 | 4/12
28 h-m-p 1.6000 8.0000 0.0527 YC 9864.024340 1 1.1203 618 | 4/12
29 h-m-p 1.1318 8.0000 0.0521 CC 9864.022073 1 1.7128 643 | 4/12
30 h-m-p 1.6000 8.0000 0.0179 C 9864.021706 0 1.4891 666 | 4/12
31 h-m-p 1.6000 8.0000 0.0123 ++ 9864.018438 m 8.0000 689 | 4/12
32 h-m-p 0.2011 8.0000 0.4883 +YCCCC 9864.003568 4 1.0187 720 | 4/12
33 h-m-p 0.5062 8.0000 0.9826 YCC 9863.999286 2 0.2426 746 | 4/12
34 h-m-p 0.3485 8.0000 0.6840 +YCC 9863.974942 2 0.9865 773 | 4/12
35 h-m-p 1.6000 8.0000 0.1901 YC 9863.957247 1 1.0048 797 | 4/12
36 h-m-p 0.3850 8.0000 0.4961 +YYYC 9863.931490 3 1.4138 824 | 4/12
37 h-m-p 1.4039 8.0000 0.4996 CYCCC 9863.868853 4 2.4479 854 | 4/12
38 h-m-p 1.0521 5.2607 1.1547 YC 9863.795750 1 0.6933 878 | 4/12
39 h-m-p 0.2316 3.4897 3.4575 CCC 9863.754958 2 0.3326 897 | 4/12
40 h-m-p 0.9876 4.9380 0.7158 CC 9863.735742 1 0.9876 914 | 4/12
41 h-m-p 1.6000 8.0000 0.2190 YC 9863.721165 1 1.0316 938 | 4/12
42 h-m-p 0.5001 8.0000 0.4518 +YC 9863.694422 1 3.7991 963 | 4/12
43 h-m-p 1.6000 8.0000 0.3221 YC 9863.650726 1 3.4240 987 | 4/12
44 h-m-p 0.5651 8.0000 1.9515 +CC 9863.551572 1 2.2899 1013 | 4/12
45 h-m-p 1.6000 8.0000 2.2366 YY 9863.449862 1 1.6000 1029 | 4/12
46 h-m-p 1.0180 8.0000 3.5153 YCC 9863.428553 2 0.6825 1047 | 4/12
47 h-m-p 1.4104 8.0000 1.7010 C 9863.410078 0 1.3609 1062 | 4/12
48 h-m-p 1.6000 8.0000 0.8913 C 9863.404810 0 1.3273 1077 | 4/12
49 h-m-p 1.6000 8.0000 0.3512 YC 9863.402902 1 2.6090 1101 | 4/12
50 h-m-p 1.3801 8.0000 0.6639 C 9863.401557 0 1.2925 1124 | 4/12
51 h-m-p 1.6000 8.0000 0.1416 YC 9863.401273 1 0.9571 1148 | 4/12
52 h-m-p 1.6000 8.0000 0.0117 Y 9863.401269 0 1.0784 1171 | 4/12
53 h-m-p 1.6000 8.0000 0.0009 Y 9863.401269 0 0.8509 1194 | 4/12
54 h-m-p 1.0361 8.0000 0.0008 ---------------Y 9863.401269 0 0.0000 1232
Out..
lnL = -9863.401269
1233 lfun, 4932 eigenQcodon, 25893 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -9874.035636 S = -9430.824316 -481.819766
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 279 patterns 0:13
did 20 / 279 patterns 0:13
did 30 / 279 patterns 0:13
did 40 / 279 patterns 0:13
did 50 / 279 patterns 0:13
did 60 / 279 patterns 0:13
did 70 / 279 patterns 0:13
did 80 / 279 patterns 0:13
did 90 / 279 patterns 0:13
did 100 / 279 patterns 0:13
did 110 / 279 patterns 0:13
did 120 / 279 patterns 0:13
did 130 / 279 patterns 0:13
did 140 / 279 patterns 0:13
did 150 / 279 patterns 0:13
did 160 / 279 patterns 0:13
did 170 / 279 patterns 0:13
did 180 / 279 patterns 0:13
did 190 / 279 patterns 0:14
did 200 / 279 patterns 0:14
did 210 / 279 patterns 0:14
did 220 / 279 patterns 0:14
did 230 / 279 patterns 0:14
did 240 / 279 patterns 0:14
did 250 / 279 patterns 0:14
did 260 / 279 patterns 0:14
did 270 / 279 patterns 0:14
did 279 / 279 patterns 0:14end of tree file.
Time used: 0:14
Model 7: beta
TREE # 1
(1, 2, 3, 4, 5, 6, 7); MP score: 396
0.064342 0.043289 0.034175 0.058112 0.057515 0.023515 0.048918 3.573858 0.540636 1.389961
ntime & nrate & np: 7 1 10
Bounds (np=10):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 6.812813
np = 10
lnL0 = -10509.133383
Iterating by ming2
Initial: fx= 10509.133383
x= 0.06434 0.04329 0.03418 0.05811 0.05751 0.02351 0.04892 3.57386 0.54064 1.38996
1 h-m-p 0.0000 0.0000 6148.9621 ++ 10129.671756 m 0.0000 15 | 1/10
2 h-m-p 0.0000 0.0000 6746.9883 ++ 10048.162327 m 0.0000 28 | 2/10
3 h-m-p 0.0000 0.0000 18898.8619 ++ 9982.502740 m 0.0000 41 | 3/10
4 h-m-p 0.0000 0.0000 25552.2588 ++ 9961.614936 m 0.0000 54 | 4/10
5 h-m-p 0.0000 0.0003 90.5459 +YYCYCCC 9957.346462 6 0.0002 77 | 4/10
6 h-m-p 0.0002 0.0062 88.0978 ++YYYYYC 9943.971523 5 0.0027 97 | 4/10
7 h-m-p 0.0814 1.0860 2.9300 +YCCCCC 9882.051666 5 0.2027 120 | 4/10
8 h-m-p 0.0355 0.1773 4.8425 CYCCCC 9880.051960 5 0.0552 142 | 4/10
9 h-m-p 0.0302 0.2646 8.8496 +YYYCC 9871.319199 4 0.1066 161 | 4/10
10 h-m-p 0.2039 1.0193 2.4306 YCCCC 9869.397106 4 0.2198 181 | 4/10
11 h-m-p 0.1706 0.8529 0.8802 YCYYCC 9866.679836 5 0.5447 202 | 4/10
12 h-m-p 0.0713 0.3564 0.8517 +YYYYYYYCYC 9865.319446 10 0.3039 234 | 4/10
13 h-m-p 0.0050 0.0249 2.4476 +YCYC 9865.229805 3 0.0115 258 | 4/10
14 h-m-p 0.0632 0.3161 0.3475 ++ 9865.052989 m 0.3161 271 | 5/10
15 h-m-p 0.0783 8.0000 1.4019 YYYCYYYYC 9864.994544 8 0.0467 299 | 4/10
16 h-m-p 0.0028 1.4215 662.1360 -YC 9864.971965 1 0.0001 314 | 4/10
17 h-m-p 1.6000 8.0000 0.0014
QuantileBeta(0.05, 0.00732, 0.03101) = 1.069097e-160 2000 rounds
C
QuantileBeta(0.05, 0.00727, 0.03069) = 4.921163e-162 2000 rounds
QuantileBeta(0.05, 0.00732, 0.03100) = 1.008978e-160 2000 rounds
C 9864.964711 1 0.6075 329
QuantileBeta(0.05, 0.00732, 0.03100) = 1.008978e-160 2000 rounds
QuantileBeta(0.05, 0.00732, 0.03100) = 1.008978e-160 2000 rounds
QuantileBeta(0.05, 0.00732, 0.03100) = 1.008978e-160 2000 rounds
QuantileBeta(0.05, 0.00732, 0.03100) = 1.008978e-160 2000 rounds
QuantileBeta(0.05, 0.00732, 0.03100) = 1.008978e-160 2000 rounds
QuantileBeta(0.05, 0.00732, 0.03100) = 1.008978e-160 2000 rounds
QuantileBeta(0.05, 0.00732, 0.03100) = 1.008978e-160 2000 rounds
QuantileBeta(0.05, 0.00732, 0.03100) = 1.008978e-160 2000 rounds
QuantileBeta(0.05, 0.00732, 0.03100) = 1.008978e-160 2000 rounds
QuantileBeta(0.05, 0.00732, 0.03100) = 1.008978e-160 2000 rounds
QuantileBeta(0.05, 0.00732, 0.03100) = 1.008978e-160 2000 rounds
QuantileBeta(0.05, 0.00732, 0.03100) = 1.008978e-160 2000 rounds
QuantileBeta(0.05, 0.00732, 0.03106) = 9.616320e-161 2000 rounds
QuantileBeta(0.05, 0.00732, 0.03094) = 1.058825e-160 2000 rounds
| 4/10
18 h-m-p 0.1218 8.0000 0.0068
QuantileBeta(0.05, 0.00729, 0.03085) = 2.560841e-161 2000 rounds
++YC 9864.955040 1 1.2207 351 | 4/10
19 h-m-p 1.6000 8.0000 0.0016 C 9864.954926 0 1.6783 370 | 4/10
20 h-m-p 1.6000 8.0000 0.0004 ++ 9864.954699 m 8.0000 389 | 4/10
21 h-m-p 1.6000 8.0000 0.0010 C 9864.954673 0 1.4695 408 | 4/10
22 h-m-p 1.6000 8.0000 0.0005 ++ 9864.954649 m 8.0000 427 | 4/10
23 h-m-p 0.5695 2.8474 0.0009 ++ 9864.954638 m 2.8474 446 | 5/10
24 h-m-p 0.0160 8.0000 0.2493 Y 9864.954613 0 0.0040 465 | 5/10
25 h-m-p 1.6000 8.0000 0.0003 C 9864.954612 0 1.6193 483 | 5/10
26 h-m-p 1.6000 8.0000 0.0001 C 9864.954612 0 1.6286 501 | 5/10
27 h-m-p 1.6000 8.0000 0.0000 Y 9864.954612 0 0.4000 519 | 5/10
28 h-m-p 0.6369 8.0000 0.0000 ------C 9864.954612 0 0.0000 543
Out..
lnL = -9864.954612
544 lfun, 5984 eigenQcodon, 38080 P(t)
end of tree file.
Time used: 0:27
Model 8: beta&w>1
TREE # 1
(1, 2, 3, 4, 5, 6, 7); MP score: 396
0.032095 0.055113 0.049271 0.088283 0.037179 0.026229 0.014831 3.458530 0.900000 0.225638 1.819365 1.300000
ntime & nrate & np: 7 2 12
Bounds (np=12):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 7.640008
np = 12
lnL0 = -10705.563224
Iterating by ming2
Initial: fx= 10705.563224
x= 0.03209 0.05511 0.04927 0.08828 0.03718 0.02623 0.01483 3.45853 0.90000 0.22564 1.81936 1.30000
1 h-m-p 0.0000 0.0000 11473.0233 ++ 10190.756947 m 0.0000 17 | 1/12
2 h-m-p 0.0000 0.0000 4372.3896 ++ 10097.733322 m 0.0000 32 | 2/12
3 h-m-p 0.0000 0.0000 5322.2326 +CYCCYC 9991.316541 5 0.0000 57 | 2/12
4 h-m-p 0.0000 0.0000 4198.2498 ++ 9971.673265 m 0.0000 72 | 3/12
5 h-m-p 0.0000 0.0000 1376.0981 ++ 9948.614082 m 0.0000 87 | 4/12
6 h-m-p 0.0002 0.0084 27.3511 ++YYYCC 9943.684843 4 0.0031 109 | 4/12
7 h-m-p 0.0038 0.0189 9.8602 +CYYYC 9941.506577 4 0.0169 130 | 4/12
8 h-m-p 0.0017 0.0086 11.5165 ++ 9940.346628 m 0.0086 145 | 5/12
9 h-m-p 0.0003 0.0074 297.0928 +CYCYC 9933.074016 4 0.0029 168 | 5/12
10 h-m-p 0.0196 0.0979 12.2149 +YYYYYY 9928.301072 5 0.0783 189 | 5/12
11 h-m-p 0.0059 0.0296 9.7428 CYCYYCC 9925.223242 6 0.0132 214 | 5/12
12 h-m-p 0.0167 0.2351 7.7043 +YCCCYC 9903.935771 5 0.1791 239 | 5/12
13 h-m-p 0.7990 8.0000 1.7267 YCYCCC 9898.022369 5 0.3587 262 | 5/12
14 h-m-p 0.1375 0.6874 0.7458 YCYCCC 9896.451429 5 0.3116 285 | 4/12
15 h-m-p 0.0044 0.0219 14.6086 --CYY 9896.446419 2 0.0002 313 | 4/12
16 h-m-p 0.0033 1.6350 1.0424 YCC 9896.439943 2 0.0072 331 | 4/12
17 h-m-p 0.0367 8.0000 0.2053 -------------Y 9896.439943 0 0.0000 359 | 4/12
18 h-m-p 0.0000 0.0001 2711.8473 ++ 9895.472609 m 0.0001 382 | 5/12
19 h-m-p 0.3944 2.8868 0.6838 ---------------.. | 5/12
20 h-m-p 0.0000 0.0001 1967.9666 -YYCCC 9894.185994 4 0.0000 439 | 5/12
21 h-m-p 0.0000 0.0001 863.2884 +YYCCC 9883.147178 4 0.0000 461 | 5/12
22 h-m-p 0.0000 0.0004 2316.9987 YCCC 9869.203716 3 0.0000 481 | 5/12
23 h-m-p 0.0008 0.0136 66.2015 CCC 9868.865154 2 0.0002 500 | 5/12
24 h-m-p 0.0017 0.1575 6.1575 +++CCC 9866.133397 2 0.1143 522 | 4/12
25 h-m-p 0.0000 0.0000 9259.4548 YCYC 9865.875426 3 0.0000 541 | 4/12
26 h-m-p 0.0096 0.1489 3.5700 +YCYCCC 9865.364133 5 0.0791 565 | 4/12
27 h-m-p 0.0025 0.0331 113.0177 CC 9864.995114 1 0.0024 582 | 4/12
28 h-m-p 0.4609 2.3047 0.0760 +YC 9864.605901 1 1.5736 599 | 4/12
29 h-m-p 1.0405 5.2026 0.0769 YC 9864.577051 1 0.6527 623 | 4/12
30 h-m-p 1.6000 8.0000 0.0066 +YC 9864.570385 1 4.5322 648 | 4/12
31 h-m-p 1.6000 8.0000 0.0146 +YC 9864.549112 1 4.0672 673 | 4/12
32 h-m-p 1.6000 8.0000 0.0252 YYC 9864.537238 2 1.4093 698 | 4/12
33 h-m-p 1.6000 8.0000 0.0113 YC 9864.529936 1 0.8082 722 | 4/12
34 h-m-p 0.5444 8.0000 0.0167 +CC 9864.521795 1 2.3670 748 | 4/12
35 h-m-p 1.6000 8.0000 0.0074 YC 9864.514063 1 2.9406 772 | 4/12
36 h-m-p 0.7121 8.0000 0.0306 CC 9864.509974 1 0.7517 797 | 4/12
37 h-m-p 1.6000 8.0000 0.0085 C 9864.506635 0 1.5462 820 | 4/12
38 h-m-p 1.6000 8.0000 0.0028 YC 9864.504285 1 3.1202 844 | 4/12
39 h-m-p 0.3232 8.0000 0.0275 CC 9864.503205 1 0.5410 869 | 4/12
40 h-m-p 1.6000 8.0000 0.0071 C 9864.502526 0 1.6000 892 | 4/12
41 h-m-p 1.6000 8.0000 0.0017 Y 9864.502296 0 1.0859 915 | 4/12
42 h-m-p 0.4461 8.0000 0.0041 +Y 9864.502169 0 1.3070 939 | 4/12
43 h-m-p 1.6000 8.0000 0.0015 C 9864.502151 0 1.3383 962 | 4/12
44 h-m-p 1.6000 8.0000 0.0001 C 9864.502149 0 1.3797 985 | 4/12
45 h-m-p 0.4120 8.0000 0.0003 ++C 9864.502145 0 6.7500 1010 | 4/12
46 h-m-p 0.6583 8.0000 0.0033 ++ 9864.502046 m 8.0000 1033 | 4/12
47 h-m-p 0.1898 8.0000 0.1388 Y 9864.501986 0 0.1085 1056 | 4/12
48 h-m-p 0.2131 8.0000 0.0706 +Y 9864.501723 0 0.6417 1080 | 4/12
49 h-m-p 0.3024 8.0000 0.1499 ++C 9864.479512 0 4.8386 1105 | 4/12
50 h-m-p 0.0325 0.6532 22.3050 -YC 9864.478963 1 0.0039 1130 | 4/12
51 h-m-p 1.6000 8.0000 0.0319 ++ 9864.443485 m 8.0000 1145 | 4/12
52 h-m-p 0.2733 8.0000 0.9347 +CC 9864.359164 1 1.5366 1171 | 4/12
53 h-m-p 1.6000 8.0000 0.4627 YC 9864.327280 1 3.2060 1195 | 4/12
54 h-m-p 1.6000 8.0000 0.5446 YCC 9864.298304 2 3.0013 1221 | 4/12
55 h-m-p 0.8414 8.0000 1.9427 C 9864.280697 0 0.8485 1244 | 4/12
56 h-m-p 1.0395 8.0000 1.5858 YC 9864.264082 1 2.2471 1260 | 4/12
57 h-m-p 1.6000 8.0000 1.1447 YC 9864.250345 1 2.4451 1276 | 4/12
58 h-m-p 0.9125 8.0000 3.0671 YC 9864.237885 1 2.1326 1292 | 4/12
59 h-m-p 1.6000 8.0000 3.1590 +YC 9864.226373 1 4.1328 1309 | 4/12
60 h-m-p 1.6000 8.0000 4.2324 CC 9864.220499 1 2.1532 1326 | 4/12
61 h-m-p 1.6000 8.0000 5.4421 +C 9864.213899 0 5.9050 1342 | 4/12
62 h-m-p 0.5228 2.6142 9.2995 +C 9864.210582 0 1.9619 1358 | 4/12
63 h-m-p 0.0967 0.4835 12.5470 ++ 9864.210013 m 0.4835 1373 | 4/12
64 h-m-p 0.0000 0.0000 60.9308
h-m-p: 0.00000000e+00 0.00000000e+00 6.09307943e+01 9864.210013
.. | 4/12
65 h-m-p 0.0008 0.4222 2.4131 ---C 9864.210000 0 0.0000 1403 | 4/12
66 h-m-p 0.0000 0.0033 3.8628 C 9864.209987 0 0.0000 1418 | 4/12
67 h-m-p 0.0008 0.4191 0.6042 C 9864.209958 0 0.0002 1433 | 4/12
68 h-m-p 0.0022 1.1023 0.1248 Y 9864.209956 0 0.0003 1456 | 4/12
69 h-m-p 0.0160 8.0000 0.1378 ++YC 9864.207429 1 0.4714 1482 | 4/12
70 h-m-p 0.1635 8.0000 0.3972 ++CCCC 9864.146848 3 3.2983 1513 | 4/12
71 h-m-p 0.6970 4.9210 1.8799 CC 9864.127338 1 0.2845 1538 | 4/12
72 h-m-p 1.6000 8.0000 0.1241 YC 9864.102023 1 1.0337 1554 | 4/12
73 h-m-p 0.1527 7.4305 0.8403 +CYC 9864.078130 2 0.9756 1581 | 4/12
74 h-m-p 1.6000 8.0000 0.1574 CYC 9864.071178 2 1.9102 1607 | 4/12
75 h-m-p 1.1721 8.0000 0.2565 YC 9864.070547 1 0.5376 1631 | 4/12
76 h-m-p 1.6000 8.0000 0.0199 Y 9864.070481 0 1.0217 1654 | 4/12
77 h-m-p 1.6000 8.0000 0.0051 C 9864.070479 0 1.3185 1677 | 4/12
78 h-m-p 1.6000 8.0000 0.0001 C 9864.070479 0 1.8677 1700 | 4/12
79 h-m-p 1.4689 8.0000 0.0002 -C 9864.070479 0 0.0999 1724 | 4/12
80 h-m-p 0.0681 8.0000 0.0003 Y 9864.070479 0 0.0681 1747 | 4/12
81 h-m-p 0.2959 8.0000 0.0001 --C 9864.070479 0 0.0046 1772
Out..
lnL = -9864.070479
1773 lfun, 21276 eigenQcodon, 136521 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -9871.530887 S = -9431.324105 -456.375261
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 279 patterns 1:13
did 20 / 279 patterns 1:13
did 30 / 279 patterns 1:14
did 40 / 279 patterns 1:14
did 50 / 279 patterns 1:14
did 60 / 279 patterns 1:14
did 70 / 279 patterns 1:14
did 80 / 279 patterns 1:15
did 90 / 279 patterns 1:15
did 100 / 279 patterns 1:15
did 110 / 279 patterns 1:15
did 120 / 279 patterns 1:15
did 130 / 279 patterns 1:15
did 140 / 279 patterns 1:16
did 150 / 279 patterns 1:16
did 160 / 279 patterns 1:16
did 170 / 279 patterns 1:16
did 180 / 279 patterns 1:16
did 190 / 279 patterns 1:17
did 200 / 279 patterns 1:17
did 210 / 279 patterns 1:17
did 220 / 279 patterns 1:17
did 230 / 279 patterns 1:17
did 240 / 279 patterns 1:18
did 250 / 279 patterns 1:18
did 260 / 279 patterns 1:18
did 270 / 279 patterns 1:18
did 279 / 279 patterns 1:18end of tree file.
Time used: 1:18
The loglikelihoods for models M1, M2, M7 and M8 are -9864.954228 -9863.401269 -9864.954612 -9864.070479 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus GKKVEFNDKPKVRKIPSTRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDA
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDA
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDA
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDA
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDA
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDA
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDA
**** *******:::******** ************************************
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus VESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFSAPDDEDCVAA
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus VESTLSPCKEHGVIGTKVCALLERVVDDYVYLFDEGGEEVIASRMYCSFSAP-DEDCVAT
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus VESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAP-DEDCVAT
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus VESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAP-DEDCVAT
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus VESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAP-DEDCVAT
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus VESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAP-DEDCVAT
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus VESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAP-DEDCVAT
***********.**********:*:..**********:****.********* ******:
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus DVVDADENQDDDAEDSAVLVADTQEEDGVAKGQVE-ADSEICVAHTGSQEELAEPDAVGS
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus DVVYADENQDDDADDPVVLVADTQEEDGVAKEQVDSADSEICVAHTGGQ-EMTEHDAVGS
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus DVVYADENQDDDADDPVVLVADTQEEDGVAKEQVDSADSEICVAHTGGQ-EMTEPDAVGS
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus DVVYADENQDDDADDPVVLVADTQEEDGVAREQVDSADSEICVAHTGGQ-EMTEPDVVGS
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus DVVYADENQDDDADDPVVLVADTQEEDGVAKEQVDSADSEICVAHTGGQ-EMTEPDAVGS
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus DVVYADENQDDDADDPVVLVADTQEEDGVAKEQVDSADSEICVAHTGGQ-EMTEPDAVGS
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus DVVYADENQDDDADDPVVLVADTQEEDGVAKEQVDSADSEICVAHTGGQ-EMTEPDAVGS
*** *********:*..*************: **: ***********.* *::* *.***
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus QTPIASAEETEVGEASDREGIAEAKATVCADAVDACPDQVEAFEIEKVEDSILDELQTEL
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus QTPIASAEETEVGEACDREGIAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTEL
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus QTPIASAEETEVGEACDREGIAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTEL
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus QTPIASAEETEVGEACDREGIAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTEL
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus QTPIASAEETEVGEACDREGIAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTEL
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus QTPIASAEETEVGEACDREGIAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTEL
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus QTPIASAEETEVGEACDREGIAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTEL
***************.*******.********:**********:*********.******
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus NAPADKTYEDVLAFDAVCSEALSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus NAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus NAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus NAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus NAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus NAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus NAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQ
****************: **:***************************************
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus SLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSIILPQGGYVADFAYFFLSQCSFK
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFAYFFLSQCSFK
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFAYFFLSQCSFK
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFAYFFLSQCSFK
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFAYFFLSQCSFK
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFAYFFLSQCSFK
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus SLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFAYFFLSQCSFK
********* ***********************.**************************
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus AYANWRCLECDMELKLQGLDAMFFYGDVVSHMCKCGNSMTLLSADIPYTLHFGVRDDKFC
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus VHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMTLLSADIPYTLHFGVRDDKFC
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus VHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMTLLSADIPYTLHFGVRDDKFC
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus VHANWRCLKCGMELKLQGLDAVFFYGDVVSHMCKCGNSMTLLSADIPYTFDFGVRDDKFC
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus VHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMTLLSADIPYTLHFGVRDDKFC
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus VHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMTLLSADIPYTLHFGVRDDKFC
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus VHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMTLLSADIPYTLHFGVRDDKFC
.:******:*.**********:***************************:.*********
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus AFYTPRKVFRAACAVDVNDCHSMAVVEGKQIDGKVVTKFIGDKFDFMVGYGMTFSMSPFE
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus AFYTPRKVFRAACAVDVNDCHSMAVVDGKQIDGKVVTKFNGDKFDFMVGHGMTFSMSPFE
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus AFYTPRKVFRAACAVDVNDCHSMAVVDGKQIDGKVVTKFNGDKFDFMVGHGMTFSMSPFE
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus AFYTPRKVFRAACAVDVNDCHSMAVVDGKQIDGKVVTKFNGDKFDFMVGHGMTFSMSPFE
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus AFYTPRKVFRAACAVDVNDCHSMAVVDGKQIDGKVVTKFNGDKFDFMVGHGMTFSMSPFE
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus AFYTPRKVFRAACAVDVNDCHSMAVVDGKQIDGKVVTKFNGDKFDFMVGHGMTFSMSPFE
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus AFYTPRKVFRAACAVDVNDCHSMAVVDGKQIDGKVVTKFNGDKFDFMVGHGMTFSMSPFE
**************************:************ *********:**********
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus LAQLYGSCITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIK
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus IAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFIN
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus IAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFIN
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus IAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFIN
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus IAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFIN
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus IAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFIN
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus IAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFIN
:**********************:* *.***********************: **.***:
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus ETSDMVKAQGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus ETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus ETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus ETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDN
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus ETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus ETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus ETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDN
**:************ ****:********************::*****************
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSLQ
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQ
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQ
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQ
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQ
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQ
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus VVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQ
**********************************************************:*
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus LAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCLP
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus LAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCLP
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus LAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCLP
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus LAKNLCRDVKFVTNACSSLFSESSFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCLP
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus LAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCLP
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus LAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCLP
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus LAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCLP
***********************.************************************
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus TDWRLVNKFDSVDGVRTIKYFECPGGIFVSSQGKKFGYVQNGSFKEASVSQIRALLANKV
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus TDWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLANKV
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus TDWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLANKV
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus TDWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLANKV
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus TDWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLANKV
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus TDWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLANKV
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus TDWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLANKV
************************* :*********************************
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus DVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEAD
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus DVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAAD
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus DVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAAD
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus DVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAAD
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus DVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAAD
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus DVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAAD
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus DVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAAD
********************************************:*********.** **
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus LVAVKDAFGFDEPQLLKYYTMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus LAAVKDAFGFDEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus LAAVKDAFGFDEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus LAAVKDAFGFDEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus LAAVKDAFGFDEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus LAAVKDAFGFDEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus LAAVKDAFGFDEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLK
*.**************:**:****************************************
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGATCNLE
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREADLSGATCDLE
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREADLSGATCDLE
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus FPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGATCDLE
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREADLSGATCDLE
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREADLSGATCDLE
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus FPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREADLSGATCDLE
******:.. ***************************** **:** ***********:**
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus FVCKCGMKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLVHCTQFNVPFLICSNTP
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus FICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLVHCTQFNVPFLICSNTP
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus FICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLVHCTQFNVPFLICSNTP
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus FICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLVHCTQFNVPFLICSNTP
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus FICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLVHCTQFNVPFLICSNTP
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus FICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLVHCTQFNVPFLICSNTP
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus FICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLVHCTQFNVPFLICSNTP
*:****:*******************..**:*********.*******************
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus EGRKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTDCLYLKNLK
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus EGKKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNLK
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus EGKKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNLK
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus EGKKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNLK
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus EGKKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNLK
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus EGKKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNLK
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus EGKKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNLK
**:*************************************.*******************
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus QTFSSVLTTFYLDDVKCVEYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVDGVYTNFKLV
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus QTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLV
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus QTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLV
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus QTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLV
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus QTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLV
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus QTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLV
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus QTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLV
*********:******** *******************************:*********
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus GHSIAEKLNAKLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSSGCITFGKPVVW
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus GHDIAEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus GHDIAEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus GHDIAEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus GHDIAEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus GHDIAEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus GHDIAEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIW
**.*****************:***************************.**:******:*
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus LGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDKGPVPAAVLVTG-VPGADASA--
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAIS
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAIS
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAIS
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAIS
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAIS
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus RGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAIS
************************************: ***:****** ..******
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus -GAGIAKEQKACASASVEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEGSVVVNDPT
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus TEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVKLNGVKKPVKVEDSVVVNDPT
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus TEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVKLNGVKKPVKVEDSVVVNDPT
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus TEPGTAKEQKACASDSVEDQIVMEAQKKSSVTTVAVKEVKLNGVKKPVKWNCSVVVNDPT
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus TEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVKLNGVKKPVKVEDSVVVNDPT
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus TEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVKLNGVKKPVKVEDSVVVNDPT
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus TEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVKLNGVKKPVKVEDSVVVNDPT
.* ********* *****:* *.::..**::. ************** : ********
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus SETKVVKSLSIVDVYDMFLTGCKYVVWTANELSRLVNSPTVREYVKWGMGKIVTPAKLLL
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus SETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSNLIIPANLLL
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus SETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSKLIIPANLLL
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus SETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSKLIIPANLLL
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus SETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSKLIIPANLLL
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus SETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSKLIIPANLLL
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus SETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSKLIIPANLLL
**********************:************:*************.::: **:***
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus LRDEKQEFVAPKVVKAKAIACYCAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCC
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus LRDEKQEFVAPKVVKAKAIACYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCC
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus LRDEKQEFVAPKVVKAKAIACYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCC
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus LRDEKQEFVAPKVVKAKAIACYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCC
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus LRDEKQEFVAPKVVKAKAIACYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCC
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus LRDEKQEFVAPKVVKAKAIACYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCC
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus LRDEKQEFVAPKVVKAKAIACYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCC
********************** *************************************
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus LAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPTFVGQIVAW
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus LAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus LAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus LAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus LAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus LAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus LAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAW
*************************************************** ********
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus FKTTFGVSTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRLS
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVS
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVS
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYESINVVQHVVDRRVS
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVS
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVS
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus VKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVS
.****** *************************************::***********:*
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus FDYISLFKLVVELVIGYSLYTVCFYPLFVLIGMQLLTTWLPEFFMLETMHWSARLFVFVA
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus FDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVA
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus FDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVA
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus FDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVA
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus FDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVA
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus FDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVA
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus FDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVA
******************************:*************** *************
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus NMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLR
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus NMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLR
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus NMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLR
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus NMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLR
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus NMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLR
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus NMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLR
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus NMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLR
************************************************************
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus YYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVT
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus YYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVI
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus YYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVI
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus YYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVI
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus YYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVI
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus YYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVI
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus YYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVI
***********************************************************
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus EVKQVGCSMRLFYERDGQRVYDDVNASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus EVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus EVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus EVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus EVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus EVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus EVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGF
************************.***********************************
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus LGAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVN
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDVDRKSLTSFVN
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDVDRKSLTSFVN
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTSFVN
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDVDRKSLTSFVN
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDVDRKSLTSFVN
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus LNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDVDRKSLTSFVN
*.*************************************** *** *************
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus AAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITKSVMSAVNAGVDFTDESCNNL
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus AAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNL
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus AAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNL
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus AAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNL
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus AAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNL
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus AAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNL
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus AAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNL
*******************:***********************:******:.********
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus VPTYVKSDTIVAADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKAC
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus VPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKAC
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus VPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKAC
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus VPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKAC
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus VPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKAC
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus VPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKAC
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus VPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKAC
***************************:********************************
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus SKTGLKIKLTYNKQEANVPILTTPFSLKGG
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus VKTGLKIKLTYNKQEANVPILTTPFSLKGG
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus VKTGLKIKLTYNKQEANVPILTTPFSLKGG
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus VKTGLKIKLTYNKQEANVPILTTPFSLKGG
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus VKTGLKIKLTYNKQEANVPILTTPFSLKGG
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus VKTGLKIKLTYNKQEANVPILTTPFSLKGG
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus VKTGLKIKLTYNKQEANVPILTTPFSLKGG
*****************************
>A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus GGCAAGAAAGTCGAGTTTAACGACAAGCCCAAAGTCAGGAAGATACCCTCCACCCGTAAGATTAAGATCACCTTCGCACTGGATGCGACCTTTGATAGTGTTCTTTCGAAGGCGTGTTCAGAGTTTGAAGTTGATAAAGATGTTACATTGGATGAGCTGCTTGATGTTGTGCTTGACGCAGTTGAGAGTACGCTCAGCCCTTGTAAGGAGCATGATGTGATAGGCACAAAAGTTTGTGCTTTACTTGATAGGTTGGCAGGAGATTATGTCTATCTTTTTGATGAGGGAGGCGATGAAGTGATCGCCCCGAGGATGTATTGTTCCTTTTCTGCTCCTGATGATGAAGACTGCGTTGCAGCGGATGTTGTAGATGCAGATGAAAACCAAGATGATGATGCTGAAGACTCAGCAGTCCTTGTCGCTGATACCCAAGAAGAGGACGGCGTTGCCAAGGGGCAGGTTGAG---GCGGATTCGGAAATTTGCGTTGCGCATACTGGTAGTCAAGAAGAATTGGCTGAGCCTGATGCTGTCGGATCTCAAACTCCCATCGCCTCTGCTGAGGAAACCGAAGTCGGAGAGGCAAGCGACAGGGAAGGGATTGCTGAGGCGAAGGCAACTGTGTGTGCTGATGCTGTAGATGCCTGCCCCGATCAAGTGGAGGCATTTGAAATTGAAAAGGTTGAAGACTCTATCTTGGATGAGCTTCAAACTGAACTTAATGCGCCAGCGGACAAGACCTATGAGGATGTCTTGGCATTCGATGCCGTATGCTCAGAGGCGTTGTCTGCATTCTATGCTGTGCCGAGTGATGAGACGCACTTTAAAGTGTGTGGATTCTATTCGCCTGCTATAGAGCGCACTAATTGTTGGCTGCGTTCTACTTTGATAGTAATGCAGAGTCTACCTTTGGAATTTAAAGACTTGGAGATGCAAAAGCTCTGGTTGTCTTACAAGGCCGGCTATGACCAATGCTTTGTGGACAAACTAGTTAAGAGCGTGCCCAAGTCTATTATCCTTCCACAAGGTGGTTATGTGGCAGATTTTGCCTATTTCTTTCTAAGCCAGTGTAGCTTTAAAGCTTATGCTAACTGGCGTTGTTTAGAGTGTGACATGGAGTTAAAGCTTCAAGGCTTGGACGCCATGTTTTTCTATGGGGACGTTGTGTCTCATATGTGCAAGTGTGGTAATAGCATGACCTTGTTGTCTGCAGATATACCCTACACTTTGCATTTTGGAGTGCGAGATGATAAGTTTTGCGCTTTTTACACGCCAAGAAAGGTCTTTAGGGCTGCTTGTGCGGTAGATGTTAATGATTGTCACTCTATGGCTGTAGTAGAGGGCAAGCAAATTGATGGTAAAGTGGTTACCAAATTTATTGGTGACAAATTTGATTTTATGGTGGGTTACGGGATGACATTTAGTATGTCTCCTTTTGAACTCGCCCAGTTATATGGTTCATGTATAACACCAAATGTTTGTTTTGTTAAAGGAGATGTTATAAAGGTTGTTCGCTTAGTTAATGCTGAAGTCATTGTTAACCCTGCTAATGGGCGTATGGCTCATGGTGCAGGTGTTGCAGGTGCTATAGCTGAAAAGGCGGGCAGTGCTTTTATTAAAGAAACCTCCGATATGGTGAAGGCTCAGGGCGTTTGCCAGGTTGGTGAATGCTATGAATCTGCCGGTGGTAAGTTATGTAAAAAGGTGCTTAACATTGTAGGGCCAGATGCGCGAGGGCATGGCAAGCAATGCTATTCACTTTTAGAGCGTGCTTATCAGCATATTAATAAGTGTGACAATGTTGTCACTACTTTAATTTCGGCTGGTATATTTAGTGTGCCTACTGATGTCTCCCTAACTTACTTACTTGGTGTAGTGACAAAGAATGTCATTCTTGTCAGTAACAACCAGGATGATTTTGATGTGATAGAGAAGTGTCAGGTGACCTCCGTTGCTGGTACCAAAGCGCTATCACTTCAATTGGCCAAAAATTTGTGCCGTGATGTAAAGTTTGTGACGAATGCATGTAGTTCGCTTTTTAGTGAATCTTGCTTTGTCTCAAGCTATGATGTGTTGCAGGAAGTTGAAGCGCTGCGACATGATATACAATTGGATGATGATGCTCGTGTCTTTGTGCAGGCTAATATGGACTGTCTGCCCACAGACTGGCGTCTCGTTAACAAATTTGATAGTGTTGATGGTGTTAGAACCATTAAGTATTTTGAATGCCCGGGCGGGATTTTTGTATCCAGCCAGGGCAAAAAGTTTGGTTATGTTCAGAATGGTTCATTTAAGGAGGCGAGTGTTAGCCAAATAAGGGCTTTACTCGCTAATAAGGTTGATGTCTTGTGTACTGTTGATGGTGTTAACTTCCGCTCCTGCTGCGTAGCAGAGGGTGAAGTTTTTGGCAAGACATTAGGTTCAGTCTTTTGTGATGGCATAAATGTCACCAAAGTTAGGTGTAGTGCCATTTACAAGGGTAAGGTTTTCTTTCAGTACAGTGATTTGTCCGAGGCAGATCTTGTGGCTGTTAAAGATGCCTTTGGTTTTGATGAACCACAACTGCTGAAGTACTACACTATGCTTGGCATGTGTAAGTGGCCAGTAGTTGTTTGTGGCAATTATTTTGCTTTCAAGCAGTCAAATAATAATTGCTATATAAATGTGGCATGTTTAATGCTGCAACACTTGAGTTTAAAGTTTCCTAAGTGGCAATGGCAAGAGGCTTGGAACGAGTTCCGCTCTGGTAAACCACTAAGGTTTGTGTCCTTGGTATTAGCAAAGGGCAGCTTTAAATTTAATGAACCTTCTGATTCTATCGATTTTATGCGTGTGGTGCTACGTGAAGCAGATTTGAGTGGTGCCACGTGCAATTTGGAATTTGTTTGTAAATGTGGTATGAAGCAAGAGCAGCGCAAAGGTGTTGACGCTGTTATGCATTTTGGTACGTTGGATAAAGGTGATCTTGTCAGGGGTTATAATATCGCATGTACGTGCGGTAGTAAACTTGTGCATTGCACCCAATTTAACGTACCATTTTTAATTTGCTCCAACACACCAGAGGGTAGGAAACTGCCCGACGATGTTGTTGCAGCTAATATTTTTACTGGTGGTAGTGTGGGCCATTACACGCATGTGAAATGTAAACCCAAGTACCAGCTTTATGATGCTTGTAATGTTAATAAGGTTTCGGAGGCTAAGGGTAATTTTACCGATTGCCTCTACCTTAAAAATTTAAAGCAAACTTTTTCGTCTGTGCTGACGACTTTTTATTTAGATGATGTAAAGTGTGTGGAGTATAAGCCAGATTTATCGCAGTATTACTGTGAGTCTGGTAAATATTATACAAAACCCATTATTAAGGCCCAATTTAGAACATTTGAGAAGGTTGATGGTGTCTATACCAACTTTAAATTGGTGGGACATAGTATTGCTGAAAAACTCAATGCTAAGCTGGGATTTGATTGTAATTCTCCCTTTGTGGAGTATAAAATTACAGAGTGGCCAACAGCTACTGGAGATGTGGTGTTGGCTAGTGATGATTTGTATGTAAGTCGGTACTCAAGCGGGTGCATTACTTTTGGTAAACCGGTTGTCTGGCTTGGCCATGAGGAAGCATCGCTGAAATCTCTCACATATTTTAATAGACCTAGTGTCGTTTGTGAAAATAAATTTAATGTGTTGCCCGTTGATGTCAGTGAACCCACGGACAAGGGGCCTGTGCCTGCTGCAGTCCTTGTTACCGGC---GTCCCTGGAGCTGATGCGTCAGCT---------GGTGCCGGTATTGCCAAGGAGCAAAAAGCCTGTGCTTCTGCTAGTGTGGAGGATCAGGTTGTTACGGAGGTTCGTCAAGAGCCATCTGTTTCAGCTGCTGATGTCAAAGAGGTTAAATTGAATGGTGTTAAAAAGCCTGTTAAGGTGGAAGGTAGTGTGGTTGTTAATGATCCCACTAGCGAAACCAAAGTTGTTAAAAGTTTGTCTATTGTTGATGTCTATGATATGTTCCTGACAGGGTGTAAGTATGTGGTTTGGACTGCTAATGAGTTGTCTCGACTAGTAAATTCACCGACTGTTAGGGAGTATGTGAAGTGGGGTATGGGAAAGATTGTAACACCCGCTAAGTTGTTGTTGTTAAGAGATGAGAAGCAAGAGTTCGTAGCGCCAAAAGTAGTCAAGGCGAAAGCTATTGCCTGCTATTGTGCTGTGAAGTGGTTTCTCCTCTATTGTTTTAGTTGGATAAAGTTTAATACTGATAATAAGGTTATATACACCACAGAAGTAGCTTCAAAGCTTACTTTCAAGTTGTGCTGTTTGGCCTTTAAGAATGCCTTACAGACGTTTAATTGGAGCGTTGTGTCTAGGGGCTTTTTCCTAGTTGCAACGGTCTTTTTATTATGGTTTAACTTTTTGTATGCTAATGTTATTTTGAGTGACTTCTATTTGCCTAATATTGGGCCTCTCCCTACGTTTGTGGGACAGATAGTTGCGTGGTTTAAGACTACATTTGGTGTGTCAACCATCTGTGATTTCTACCAGGTGACGGATTTGGGCTATAGAAGTTCGTTTTGTAATGGAAGTATGGTATGTGAACTATGCTTCTCAGGTTTTGATATGCTGGACAACTATGATGCTATAAATGTTGTTCAACACGTTGTAGATAGGCGTTTGTCCTTTGACTATATTAGCCTATTTAAATTAGTAGTTGAGCTTGTAATCGGCTACTCTCTTTATACTGTGTGCTTCTACCCACTGTTTGTCCTTATTGGAATGCAGTTGTTGACCACATGGTTGCCTGAATTCTTTATGCTGGAGACTATGCATTGGAGTGCTCGTTTGTTTGTGTTTGTTGCCAATATGCTTCCAGCTTTTACGTTACTGCGATTTTACATCGTGGTGACAGCTATGTATAAGGTCTATTGTCTTTGTAGACATGTTATGTATGGATGTAGTAAGCCTGGTTGCTTGTTTTGTTATAAGAGAAACCGTAGTGTCCGTGTTAAGTGTAGCACCGTTGTTGGTGGTTCACTACGCTATTACGATGTAATGGCTAACGGCGGCACAGGTTTCTGTACAAAGCACCAGTGGAACTGTCTTAATTGCAATTCCTGGAAACCAGGCAATACATTCATAACTCATGAAGCAGCGGCGGACCTCTCTAAGGAGTTGAAACGCCCTGTGAATCCAACAGATTCTGCTTATTACTCGGTCACAGAGGTTAAGCAGGTTGGTTGTTCCATGCGTTTGTTCTACGAGAGAGATGGACAGCGTGTTTATGATGATGTTAATGCTAGTTTGTTTGTGGACATGAATGGTCTGCTGCATTCTAAAGTTAAAGGTGTGCCTGAAACGCATGTTGTGGTTGTTGAGAATGAAGCTGATAAAGCTGGTTTTCTCGGCGCCGCAGTGTTTTATGCACAATCGCTCTACAGACCTATGTTGATGGTGGAAAAGAAATTAATAACTACCGCCAACACTGGTTTGTCTGTTAGTCGAACTATGTTTGACCTTTATGTAGATTCATTGCTGAACGTCCTCGACGTGGATCGCAAGAGTCTAACAAGTTTTGTAAATGCTGCGCACAACTCTCTAAAGGAGGGTGTTCAGCTTGAACAAGTTATGGATACCTTTATTGGCTGTGCCCGACGTAAGTGTGCTATAGATTCTGATGTTGAAACCAAGTCTATTACCAAGTCCGTCATGTCGGCAGTAAATGCTGGCGTTGATTTTACGGATGAGAGTTGTAATAACTTGGTGCCTACCTATGTTAAAAGTGACACTATCGTTGCAGCCGATTTGGGTGTTCTTATTCAGAATAATGCTAAGCATGTACAGGCTAATGTTGCTAAAGCCGCTAATGTGGCTTGCATTTGGTCTGTGGATGCTTTTAACCAGCTATCTGCTGACTTACAGCATAGGCTGCGAAAAGCATGTTCAAAAACTGGCTTGAAGATTAAGCTTACTTATAATAAGCAGGAGGCAAATGTTCCTATTTTAACTACACCGTTCTCTCTTAAAGGGGGC >JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus GGCAAGAAAGTCGTGTTTAACGACAAGCCTAAAGTTAAGGAGGTACCCTCCACGCGGAAGATTAAGATTATCTTCGCTCTGGATGCGACCTTTGATAGTGTTCTCTCGAAGGCATGTTCAGAGTTTGAAGTTGATAAAGATGTTACATTGGATGAGCTGCTTGATGTTGTGCTTGACGCAGTTGAGAGTACGCTCAGCCCTTGTAAGGAGCATGGTGTGATAGGCACAAAAGTTTGTGCTCTACTTGAAAGGGTGGTGGACGATTATGTCTATCTTTTTGATGAAGGAGGCGAAGAAGTTATTGCCTCCCGTATGTATTGTTCCTTCTCTGCTCCT---GATGAAGACTGCGTTGCAACAGATGTTGTATATGCAGATGAAAACCAAGATGATGATGCTGACGATCCTGTAGTCCTTGTCGCCGATACCCAAGAAGAGGACGGCGTTGCCAAGGAGCAGGTTGATTCGGCTGATTCGGAAATTTGTGTTGCGCACACTGGTGGTCAA---GAAATGACTGAGCATGATGCTGTCGGATCTCAAACTCCCATCGCCTCTGCTGAGGAAACCGAAGTCGGTGAGGCATGCGACAGGGAAGGGATTGCTGAGGTCAAGGCAACTGTGTGTGCTGATGCTTTAGATGCCTGCCCCGATCAAGTGGAGGCATTTGATATTGAAAAGGTTGAAGACTCTATCTTAAGTGAGCTTCAAACCGAACTTAATGCGCCCGCGGACAAGACCTATGAGGATGTCTTGGCATTCGATGCCATATACTCAGAGACGTTGTCTGCATTCTATGCTGTGCCGAGTGATGAGACGCACTTTAAAGTGTGTGGATTCTATTCGCCAGCTATAGAGCGTACTAATTGTTGGCTGCGTTCTACTTTGATAGTAATGCAGAGTTTACCTTTGGAATTTAAAGACTTGGGGATGCAAAAGCTCTGGTTGTCTTACAAGGCTGGCTATGATCAATGCTTTGTGGACAAACTAGTTAAGAGCGCGCCCAAGTCTATTATTCTTCCACAAGGTGGCTATGTGGCAGATTTTGCCTATTTTTTCCTAAGCCAGTGTAGCTTCAAAGTTCATGCTAACTGGCGTTGTCTAAAGTGTGGCATGGAGTTAAAGCTTCAAGGCTTGGACGCCATGTTTTTCTATGGAGACGTTGTGTCTCATATGTGTAAGTGTGGTAATAGCATGACCTTGTTGTCTGCAGACATACCTTACACATTGCATTTTGGAGTGCGAGATGACAAATTTTGTGCTTTTTACACGCCGAGAAAAGTCTTTAGGGCTGCTTGTGCGGTTGATGTTAATGATTGCCACTCTATGGCTGTTGTGGATGGCAAGCAAATTGATGGTAAAGTTGTTACCAAATTTAATGGTGACAAATTTGATTTTATGGTGGGTCATGGTATGACATTTAGTATGTCTCCCTTTGAGATCGCCCAGTTATATGGTTCATGTATAACACCAAATGTTTGTTTTGTTAAAGGAGATGTTATAAAGGTTTTGCGCAGAGTTGGTGCTGAAGTCATCGTCAACCCTGCTAATGGGCGCATGGCTCATGGTGCGGGTGTTGCAGGTGCTATAGCTAAAGCAGCGGGCAAAGCTTTTATTAATGAGACTGCCGATATGGTGAAGGCTCAGGGCGTTTGCCAGGTTGGTGGATGCTATGAGTCTACCGGTGGTAAATTATGTAAGAAAGTGCTTAACATTGTAGGACCAGATGCGCGAGGGCATGGCAAGCAATGCTATTCACTTTTAGAGCGTGCTTATCAGCATATTAATAAGTGTGACAATGTTGTCACCACTTTAATTTCGGCTGGTATATTTAGTGTGCCTACTGATGTTTCCTTAACTTATCTACTTGGTGTAGTGACGAAGAATGTCATTCTTGTCAGTAATAACCAGGATGATTTTGATGTGATAGAGAAGTGTCAGGTGACCTCCGTTGCTGGTACCAAAGCGCTATCATTTCAATTGGCCAAAAATTTGTGCCGTGATGTAAAGTTTGTGACGAATGCATGTAGTTCGCTCTTTAGTGAATCTTGCTTTGTCTCAAGCTATGATGTGTTGCAGGAAGTTGAAGCGCTGCGACATGATATACAATTGGATGATGATGCTCGTGTCTTTGTGCAGGCTAATATGGACTGTCTGCCCACAGACTGGCGTCTTGTCAATAAATTTGATAGTGTTGATGGTGTTAGAACCATTAAGTATTTTGAATGTCCGGGCGAGGTTTTTGTATCTAGCCAGGGCAAAAAGTTTGGTTATGTTCAGAATGGTTCATTTAAGGAGGCGAGTGTTAGCCAAATAAGGGCTTTGCTTGCTAATAAGGTTGATGTCTTGTGTACTGTTGATGGTGTTAACTTCCGCTCCTGCTGTGTTGCAGAGGGTGAAGTTTTTGGCAAGACATTAGGTTCAGTTTTTTGTGATGGTATAAATGTAACCAAAGTTAGGTGTAGTGCCATTCACAAGGGTAAGGTTTTCTTTCAGTATAGTGGTCTGTCTGCGGCAGATCTCGCTGCTGTTAAAGATGCCTTTGGTTTTGATGAACCACAACTGCTGCAGTACTACAGTATGCTTGGCATGTGTAAGTGGCCAGTAGTTGTTTGTGGCAATTATTTTGCTTTTAAGCAGTCAAATAATAATTGCTATATAAATGTGGCATGTTTAATGCTGCAACACTTGAGTTTAAAGTTTCCTAAGTGGCAATGGCAGGAGGCCTGGAATGAGTTCCGCTCAGGTAAGCCACTAAGGTTCGTGTCCTTGGTCTTAGCGAAGGGCAGCTTTAAATTTAATGAACCTTCTGATTCAACTGATTTTATACGTGTGGTGCTGCGCGAAGCGGATTTGAGTGGTGCCACATGTGATTTGGAATTTATTTGTAAATGTGGTGTGAAGCAAGAGCAGCGCAAAGGTGTTGACGCTGTTATGCATTTTGGTACATTGGATAAAAGTGGTCTTGTCAAGGGTTATAATATCGCATGTACATGCGGTGATAAACTTGTGCATTGCACTCAATTTAATGTACCATTTTTAATCTGCTCCAACACGCCTGAGGGCAAGAAATTGCCTGACGATGTTGTTGCAGCTAACATATTTACTGGTGGTAGTGTGGGCCATTACACGCATGTGAAATGTAAACCCAAGTACCAACTTTATGATGCTTGTAATGTTAGTAAGGTTTCTGAGGCGAAGGGTAATTTTACCGATTGCCTCTACCTTAAAAATTTAAAGCAAACTTTTTCGTCCGTGTTGACGACTTATTATTTAGATGATGTAAAGTGTGTGGCGTATAAGCCAGATTTATCGCAGTATTACTGTGAGTCTGGAAAATATTATACAAAACCCATTATTAAGGCTCAGTTTAGAACGTTTGAGAAGGTTGAGGGTGTCTACACTAATTTTAAATTGGTGGGACATGATATAGCCGAAAAACTCAATGCTAAGCTGGGATTTGATTGTAATTCTCCTTTTATGGAGTATAAAATTACAGAGTGGCCAACAGCTACTGGAGATGTGGTGTTGGCTAGTGATGATTTGTATGTGAGTCGGTATTCAGGCGGGTGCGTTACTTTTGGTAAACCGGTTATCTGGCGTGGCCATGAGGAAGCATCGCTGAAATCCCTCACATATTTTAATAGACCTAGTGTCGTTTGTGAAAATAAATTTAATGTGTTGCCTGTTGATGTCAGTGAACCCACGGATAGGAGGCCTGTGCCGTCTGCAGTCCTTGTTACCGGTGCTGCGAGTGGTGCTGATGCGTCAGCTATATCCACCGAGCCCGGTACTGCCAAGGAGCAAAAGGCGTGTGCTTCTGATAGCGTGGAGGATCAGATTGTTATGGAGGCCCAGAAGAGGTCATCTGTCACAACCGTTGCTGTCAAAGAGGTTAAATTGAATGGTGTTAAGAAGCCTGTTAAGGTGGAAGATAGTGTGGTTGTTAATGACCCCACTAGCGAAACCAAAGTTGTTAAAAGTTTGTCTATTGTTGATGTGTATGATATGTTCCTGACAGGGTGTAGGTATGTGGTCTGGACGGCTAATGAGCTGTCTCGATTAATAAATTCACCTACTGTTAGAGAGTATGTTAAGTGGGGTATGTCTAATTTAATCATCCCCGCTAATTTGTTATTGTTAAGAGATGAGAAGCAAGAGTTTGTAGCGCCAAAAGTGGTCAAAGCGAAAGCTATTGCCTGCTATGGCGCTGTGAAGTGGTTTCTCCTCTATTGTTTTAGTTGGATAAAGTTTAATACTGATAATAAGGTTATATACACCACAGAAGTAGCTTCAAAGCTTACTTTTAAGTTATGCTGTTTGGCCTTTAAGAATGCCTTACAGACGTTTAATTGGAGCGTTGTGTCTAGGGGTTTCTTCCTAGTGGCAACGGTCTTTTTATTATGGTTTAATTTTTTGTATGCCAATGTTATTTTGAGTGACTTTTATTTGCCTAATATTGGACCTCTCCCTATGTTTGTGGGGCAGATTGTTGCTTGGGTTAAGACTACATTTGGTGTTTTAACCATCTGCGATTTTTACCAGGTGACAGATTTAGGCTATAGGAGTTCGTTTTGTAATGGAAGTATGGTCTGTGAACTATGCTTCTCTGGTTTTGATATGCTGGACAACTATGATGCCATAAATGTTGTTCAACATGTTGTAGATAGGCGTGTGTCTTTTGACTACATTAGCCTATTTAAATTAGTAGTCGAACTTGTTATCGGCTACTCTCTATATACTGTGTGCTTCTACCCACTGTTTGTCCTTGTTGGAATGCAGTTGTTGACCACATGGTTGCCTGAATTCTTTATGCTGGGGACTATGCATTGGAGCGCTCGTTTGTTTGTTTTTGTTGCTAACATGCTCCCAGCTTTTACGTTACTGCGATTTTATATCGTGGTGACAGCTATGTATAAGGTCTATTGTCTTTGTAGACATGTTATGTATGGATGTAGTAAGCCTGGTTGCTTGTTTTGTTATAAGAGAAACCGTAGTGTCCGCGTTAAGTGTAGCACCGTTGTTGGTGGTTCACTACGCTATTACGATGTAATGGCTAACGGCGGCACAGGTTTCTGTACAAAGCACCAGTGGAACTGTCTTAATTGCAATTCCTGGAAACCAGGCAATACATTCATAACTCATGAAGCAGCAGCGGACCTCTCTAAAGAGTTGAAACGCCCTGTGAATCCAACAGACTCTGCTTATTACTCGGTTATAGAGGTTAAGCAGGTTGGTTGTTCCATGCGTCTGTTCTATGAGAGAGACGGACAGCGTGTTTATGATGATGTTAGTGCTAGTTTGTTTGTGGACATGAATGGTCTGCTGCATTCTAAAGTTAAAGGTGTGCCAGAAACTCATGTTGTAGTCGTTGAGAACGAAGCCGATAAGGCCGGTTTTCTTAACGCTGCTGTTTTCTATGCACAATCTCTTTATAGACCGATGCTGATGGTGGAGAAGAAGTTAATAACTACCGCCAACACTGGTTTGTCTGTTAGTCGAACTATGTTTGACCTCTATGTAGACTCCTTGCTGAGCGTCCTTGACGTCGATCGCAAGAGTCTAACAAGTTTTGTAAATGCTGCGCACAACTCCCTAAAGGAGGGTGTTCAGCTTGAACAGGTAATGGATACCTTTGTTGGCTGTGCTCGACGTAAGTGTGCTATAGATTCTGATGTTGAGACCAAGTCTATTACCAAGTCCGTTATGGCGGCAGTGAATGCTGGCGTTGAGGTTACGGACGAGAGTTGTAATAACTTGGTGCCCACATATGTTAAAAGCGACACTATCGTTGCAGCTGATTTGGGTGTTCTTATTCAGAATAATGCTAAGCATGTACAGTCTAATGTTGCTAAAGCCGCTAATGTGGCTTGCATTTGGTCTGTGGATGCTTTTAACCAGCTATCTGCTGATTTGCAGCATAGGTTGAGAAAAGCATGTGTAAAGACTGGCTTGAAGATTAAGCTTACGTATAACAAGCAGGAGGCAAATGTTCCTATTTTAACTACACCGTTCTCCCTTAAAGGGGGC >MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus GGCAAGAAAGTCGTGTTTAACGACAAGCCTAAAGTTAAGGAGGTACCCTCCACGCGGAAGATTAAGATTATCTTCGCTCTGGATGCGACCTTTGATAGTGTTCTCTCGAAGGCATGTTCAGAGTTTGAAGTTGATAAAGATGTTACATTGGATGAGCTGCTTGATGTTGTGCTTGACGCAGTTGAGAGTACGCTCAGCCCTTGTAAGGAGCATGGTGTGATAGGCACAAAAGTTTGTGCTCTACTTGAAAGGTTGGTGGACGATTATGTCTATCTTTTTGATGAAGGAGGCGAAGAAGTTATTGCCTCCCGTATGTATTGTTCCTTCTCTGCTCCT---GATGAAGACTGCGTTGCAACAGATGTTGTATATGCAGATGAAAACCAAGATGATGATGCTGACGATCCTGTAGTCCTTGTCGCCGATACCCAAGAAGAGGACGGCGTTGCCAAGGAGCAGGTTGATTCGGCTGATTCGGAAATTTGTGTTGCGCACACTGGTGGTCAA---GAAATGACTGAGCCTGATGCTGTCGGATCTCAAACTCCCATCGCCTCTGCTGAGGAAACCGAAGTCGGTGAGGCATGCGACAGGGAAGGGATTGCTGAGGTCAAGGCAACTGTGTGTGCTGATGCTTTAGATGCCTGCCCCGATCAAGTGGAGGCATTTGATATTGAAAAGGTTGAAGACTCTATCTTAAGTGAGCTTCAAACCGAACTTAATGCGCCCGCGGACAAGACCTATGAGGATGTCTTGGCATTCGATGCCATATACTCAGAGACGTTGTCTGCATTCTATGCTGTGCCGAGTGATGAGACGCACTTTAAAGTGTGTGGATTCTATTCGCCAGCTATAGAGCGTACTAATTGTTGGCTGCGTTCTACTTTGATAGTAATGCAGAGTTTACCTTTGGAATTTAAAGACTTGGGGATGCAAAAGCTCTGGTTGTCTTACAAGGCTGGCTATGATCAATGCTTTGTGGACAAACTAGTTAAGAGCGCGCCCAAGTCTATTATTCTTCCACAAGGTGGCTATGTGGCAGATTTTGCCTATTTTTTCCTAAGCCAGTGTAGCTTCAAAGTTCATGCTAACTGGCGTTGTCTAAAGTGTGGCATGGAGTTAAAGCTTCAAGGCTTGGACGCCATGTTTTTCTATGGAGACGTTGTGTCTCATATGTGTAAGTGTGGTAATAGCATGACCTTGTTGTCTGCAGACATACCTTACACATTGCATTTTGGAGTGCGAGATGACAAATTTTGTGCTTTTTACACGCCGAGAAAAGTCTTTAGGGCTGCTTGTGCGGTTGATGTTAATGATTGCCACTCTATGGCTGTTGTGGATGGCAAGCAAATTGATGGTAAAGTTGTTACCAAATTTAATGGTGACAAATTTGATTTTATGGTGGGTCATGGTATGACATTTAGTATGTCTCCCTTTGAGATCGCCCAGTTATATGGTTCATGTATAACACCAAATGTTTGTTTTGTTAAAGGAGATGTTATAAAGGTTTTGCGCAGAGTTGGTGCTGAAGTCATCGTCAACCCTGCTAATGGGCGCATGGCTCATGGTGCGGGTGTTGCAGGTGCTATAGCTAAAGCAGCGGGCAAAGCTTTTATTAATGAGACTGCCGATATGGTGAAGGCTCAGGGCGTTTGCCAGGTTGGTGGATGCTATGAGTCTACCGGTGGTAAATTATGTAAGAAAGTGCTTAACATTGTAGGACCAGATGCGCGAGGGCATGGCAAGCAATGCTATTCACTTTTAGAGCGTGCTTATCAGCATATTAATAAGTGTGACAATGTTGTCACCACTTTAATTTCGGCTGGTATATTTAGTGTGCCTACTGATGTTTCCTTAACTTATCTACTTGGTGTAGTGACGAAGAATGTCATTCTTGTCAGTAATAACCAGGATGATTTTGATGTGATAGAGAAGTGTCAGGTGACCTCCGTTGCTGGTACCAAAGCGCTATCATTTCAATTGGCCAAAAATTTGTGCCGTGATGTAAAGTTTGTGACGAATGCATGTAGTTCGCTCTTTAGTGAATCTTGCTTTGTCTCAAGCTATGATGTGTTGCAGGAAGTTGAAGCGCTGCGACATGATATACAATTGGATGATGATGCTCGTGTCTTTGTGCAGGCTAATATGGACTGTCTGCCCACAGACTGGCGTCTTGTCAATAAATTTGATAGTGTTGATGGTGTTAGAACCATTAAGTATTTTGAATGTCCGGGCGAGGTTTTTGTATCTAGCCAGGGCAAAAAGTTTGGTTATGTTCAGAATGGTTCATTTAAGGAGGCGAGTGTTAGCCAAATAAGGGCTTTGCTTGCTAATAAGGTTGATGTCTTGTGTACTGTTGATGGTGTTAACTTCCGCTCCTGCTGTGTTGCAGAGGGTGAAGTTTTTGGCAAGACATTAGGTTCAGTTTTTTGTGATGGTATAAATGTAACCAAAGTTAGGTGTAGTGCCATTCACAAGGGTAAGGTTTTCTTTCAGTATAGTGGTCTGTCTGCGGCAGATCTCGCTGCTGTTAAAGATGCCTTTGGTTTTGATGAACCACAACTGCTGCAGTACTACAGTATGCTTGGCATGTGTAAGTGGCCAGTAGTTGTTTGTGGCAATTATTTTGCTTTTAAGCAGTCAAATAATAATTGCTATATAAATGTGGCATGTTTAATGCTGCAACACTTGAGTTTAAAGTTTCCTAAGTGGCAATGGCAGGAGGCCTGGAATGAGTTCCGCTCAGGTAAGCCACTAAGGTTCGTGTCCTTGGTCTTAGCGAAGGGCAGCTTTAAATTTAATGAACCTTCTGATTCAACTGATTTTATACGTGTGGTGCTGCGCGAAGCGGATTTGAGTGGTGCCACATGTGATTTGGAATTTATTTGTAAATGTGGTGTGAAGCAAGAGCAGCGCAAAGGTGTTGACGCTGTTATGCATTTTGGTACATTGGATAAAAGTGGTCTTGTCAAGGGTTATAATATCGCATGTACATGCGGTGATAAACTTGTGCATTGCACTCAATTTAATGTACCATTTTTAATCTGCTCCAACACGCCTGAGGGCAAGAAATTGCCTGACGATGTTGTTGCAGCTAACATATTTACTGGTGGTAGTGTGGGCCATTACACGCATGTGAAATGTAAACCCAAGTACCAACTTTATGATGCTTGTAATGTTAGTAAGGTTTCTGAGGCGAAGGGTAATTTTACCGATTGCCTCTACCTTAAAAATTTAAAGCAAACTTTTTCGTCCGTGTTGACGACTTATTATTTAGATGATGTAAAGTGTGTGGCGTATAAGCCAGATTTATCGCAGTATTACTGTGAGTCTGGAAAATATTATACAAAACCCATTATTAAGGCTCAGTTTAGAACGTTTGAGAAGGTTGAGGGTGTCTACACTAATTTTAAATTGGTGGGACATGATATAGCCGAAAAACTCAATGCTAAGCTGGGATTTGATTGTAATTCTCCTTTTATGGAGTATAAAATTACAGAGTGGCCAACAGCTACTGGAGATGTGGTGTTGGCTAGTGATGATTTGTATGTGAGTCGGTATTCAGGCGGGTGCGTTACTTTTGGTAAACCGGTTATCTGGCGTGGCCATGAGGAAGCATCGCTGAAATCCCTCACATATTTTAATAGACCTAGTGTCGTTTGTGAAAATAAATTTAATGTGTTGCCTGTTGATGTCAGTGAACCCACGGATAGGAGGCCTGTGCCGTCTGCAGTCCTTGTTACCGGTGCTGCGAGTGGTGCTGATGCGTCAGCTATATCCACCGAGCCCGGTACTGCCAAGGAGCAAAAGGCGTGTGCTTCTGATAGCGTGGAGGATCAGATTGTTATGGAGGCCCAGAAGAGGTCATCTGTCACAACCGTTGCTGTCAAAGAGGTTAAATTGAATGGTGTTAAGAAGCCTGTTAAGGTGGAAGATAGTGTGGTTGTTAATGACCCCACTAGCGAAACCAAAGTTGTTAAAAGTTTGTCTATTGTTGATGTGTATGATATGTTCCTGACAGGGTGTAGGTATGTGGTCTGGACGGCTAATGAGCTGTCTCGATTAATAAATTCACCTACTGTTAGAGAGTATGTTAAGTGGGGTATGTCGAAGTTAATCATCCCCGCTAATTTGTTATTGTTAAGAGATGAGAAGCAAGAGTTTGTAGCGCCAAAAGTGGTCAAAGCGAAAGCTATTGCCTGCTATGGCGCTGTGAAGTGGTTTCTCCTCTATTGTTTTAGTTGGATAAAGTTTAATACTGATAATAAGGTTATATACACCACAGAAGTAGCTTCAAAGCTTACTTTTAAGTTATGCTGTTTGGCCTTTAAGAATGCCTTACAGACGTTTAATTGGAGCGTTGTGTCTAGGGGTTTCTTCCTAGTGGCAACGGTCTTTTTATTATGGTTTAATTTTTTGTATGCCAATGTTATTTTGAGTGACTTTTATTTGCCTAATATTGGACCTCTCCCTATGTTTGTGGGGCAGATTGTTGCTTGGGTTAAGACTACATTTGGTGTTTTAACCATCTGCGATTTTTACCAGGTGACAGATTTAGGCTATAGGAGTTCGTTTTGTAATGGAAGTATGGTCTGTGAACTATGCTTCTCTGGTTTTGATATGCTGGACAACTATGATGCCATAAATGTTGTTCAACATGTTGTAGATAGGCGTGTGTCTTTTGACTACATTAGCCTATTTAAATTAGTAGTCGAACTTGTTATCGGCTACTCTCTATATACTGTGTGCTTCTACCCACTGTTTGTCCTTGTTGGAATGCAGTTGTTGACCACATGGTTGCCTGAATTCTTTATGCTGGGGACTATGCATTGGAGCGCTCGTTTGTTTGTTTTTGTTGCTAACATGCTCCCAGCTTTTACGTTACTGCGATTTTATATCGTGGTGACAGCTATGTATAAGGTCTATTGTCTTTGTAGACATGTTATGTATGGATGTAGTAAGCCTGGTTGCTTGTTTTGTTATAAGAGAAACCGTAGTGTCCGCGTTAAGTGTAGCACCGTTGTTGGTGGTTCACTACGCTATTACGATGTAATGGCTAACGGCGGCACAGGTTTCTGTACAAAGCACCAGTGGAACTGTCTTAATTGCAATTCCTGGAAACCAGGCAATACATTCATAACTCATGAAGCAGCAGCGGACCTCTCTAAAGAGTTGAAACGCCCTGTGAATCCAACAGACTCTGCTTATTACTCGGTCATAGAGGTTAAGCAGGTTGGTTGTTCCATGCGTCTGTTCTATGAGAGAGACGGACAGCGTGTTTATGATGATGTTAGTGCTAGTTTGTTTGTGGACATGAATGGTCTGCTGCATTCTAAAGTTAAAGGTGTGCCAGAAACTCATGTTGTAGTCGTTGAGAACGAAGCCGATAAGGCCGGTTTTCTTAACGCTGCTGTTTTCTATGCACAATCTCTTTATAGACCGATGCTGATGGTGGAGAAGAAGTTAATAACTACCGCCAACACTGGTTTGTCTGTTAGTCGAACTATGTTTGACCTCTATGTAGACTCCTTGCTGAGCGTCCTTGACGTCGATCGCAAGAGTCTAACAAGTTTTGTAAATGCTGCGCACAACTCCCTAAAGGAGGGTGTTCAGCTTGAACAGGTAATGGATACCTTTGTTGGCTGTGCTCGACGTAAGTGTGCTATAGATTCTGATGTTGAGACCAAGTCTATTACCAAGTCCGTTATGGCGGCAGTGAATGCTGGCGTTGAGGTTACGGACGAGAGTTGTAATAACTTGGTGCCCACATATGTTAAAAGCGACACTATCGTTGCAGCTGATTTGGGTGTTCTTATTCAGAATAATGCTAAGCATGTACAGTCTAATGTTGCTAAAGCCGCTAATGTGGCTTGCATTTGGTCTGTGGATGCTTTTAACCAGCTATCTGCTGATTTGCAGCATAGGTTGAGAAAAGCATGTGTAAAGACTGGCTTGAAGATTAAGCTTACGTATAACAAGCAGGAGGCAAATGTTCCTATTTTAACTACACCGTTCTCCCTTAAAGGGGGC >UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus GGCAAGAAAGTCGTGTTTAACGACAAGCCTAAAGTTAAGGAGGTACCCTCCACGCGGAAGATTAAGATTATCTTCGCTCTGGATGCGACCTTTGATAGTGTTCTCTCGAAGGCATGTTCAGAGTTTGAAGTTGATAAAGATGTTACATTGGATGAGCTGCTTGATGTTGTGCTTGACGCAGTTGAGAGTACGCTCAGCCCTTGTAAGGAGCATGGTGTGATAGGCACAAAAGTTTGTGCTCTACTTGAAAGGTTGGTGGACGATTATGTCTATCTTTTTGATGAAGGAGGCGAAGAAGTTATTGCCTCCCGTATGTATTGTTCCTTCTCTGCTCCT---GATGAAGACTGCGTTGCAACAGATGTTGTATATGCAGATGAAAACCAAGATGATGATGCTGACGATCCTGTAGTCCTTGTCGCCGATACCCAAGAAGAGGACGGCGTTGCCAGGGAGCAGGTTGATTCGGCTGATTCGGAAATTTGTGTTGCGCACACTGGTGGTCAA---GAAATGACTGAGCCTGATGTCGTCGGATCTCAAACTCCCATCGCCTCTGCTGAGGAAACCGAAGTCGGTGAGGCATGCGACAGGGAAGGGATTGCTGAGGTCAAGGCAACTGTGTGTGCTGATGCTTTAGATGCCTGCCCCGATCAAGTGGAGGCATTTGATATTGAAAAGGTTGAAGACTCTATCTTAAGTGAGCTTCAAACCGAACTTAATGCGCCCGCGGACAAGACCTATGAGGATGTCTTGGCATTCGATGCCATATACTCAGAGACGTTGTCTGCATTCTATGCTGTGCCGAGTGATGAGACGCACTTTAAAGTGTGTGGATTCTATTCGCCAGCTATAGAGCGTACTAATTGTTGGCTGCGTTCTACTTTGATAGTAATGCAGAGTTTACCTTTGGAATTTAAAGACTTGGGGATGCAAAAGCTCTGGTTGTCTTACAAGGCTGGCTATGATCAATGCTTTGTGGACAAACTAGTTAAGAGCGCGCCCAAGTCTATTATTCTTCCACAAGGTGGCTATGTGGCAGATTTTGCCTATTTTTTCCTAAGCCAGTGTAGCTTCAAAGTTCATGCTAACTGGCGTTGTCTAAAGTGTGGCATGGAGTTAAAGCTTCAAGGCTTGGACGCCGTGTTTTTCTATGGAGACGTTGTGTCTCATATGTGTAAGTGTGGTAATAGCATGACCTTGTTGTCTGCAGATATACCTTACACATTCGATTTTGGAGTGCGAGATGACAAATTTTGTGCTTTTTACACGCCGAGAAAAGTCTTTAGGGCTGCTTGTGCGGTTGATGTTAATGATTGCCACTCTATGGCTGTTGTGGATGGCAAGCAAATTGATGGTAAAGTTGTTACCAAATTTAATGGTGACAAATTTGATTTTATGGTGGGTCATGGTATGACATTTAGTATGTCTCCCTTTGAGATCGCCCAGTTATATGGTTCATGTATAACACCAAATGTTTGTTTTGTTAAAGGAGATGTTATAAAGGTTTTGCGCAGAGTTGGTGCTGAAGTCATCGTCAACCCTGCTAATGGGCGCATGGCTCATGGTGCGGGTGTTGCAGGTGCTATAGCTAAAGCAGCGGGCAAAGCTTTTATTAATGAGACTGCCGATATGGTGAAGGCTCAGGGCGTTTGCCAGGTTGGTGGATGCTATGAGTCTACCGGTGGTAAATTATGTAAGAAAGTGCTTAACATTGTAGGACCAGATGCGCGAGGGCATGGCAACGAATGCTATTCACTTTTAGAGCGTGCTTATCAGCATATTAATAAGTGTGACAATGTTGTCACCACTTTAATTTCGGCTGGTATATTTAGTGTGCCTACTGATGTTTCCTTAACTTATCTACTTGGTGTAGTGACGAAGAATGTCATTCTTGTCAGTAATAACCAGGATGATTTTGATGTGATAGAGAAGTGTCAGGTGACCTCCGTTGCTGGTACCAAAGCGCTATCATTTCAATTGGCCAAAAATTTGTGCCGTGATGTAAAGTTTGTGACGAATGCATGTAGTTCGCTCTTTAGTGAATCAAGCTTTGTCTCAAGCTATGATGTGTTGCAGGAAGTTGAAGCGCTGCGACATGATATACAATTGGATGATGATGCTCGTGTCTTTGTGCAGGCTAATATGGACTGTCTGCCCACAGACTGGCGTCTTGTCAATAAATTTGATAGTGTTGATGGTGTTAGAACCATTAAGTATTTTGAATGTCCGGGCGAGGTTTTTGTATCTAGCCAGGGCAAAAAGTTTGGTTATGTTCAGAATGGTTCATTTAAGGAGGCGAGTGTTAGCCAAATAAGGGCTTTGCTTGCTAATAAGGTTGATGTCTTGTGTACTGTTGATGGTGTTAACTTCCGCTCCTGCTGTGTTGCAGAGGGTGAAGTTTTTGGCAAGACATTAGGTTCAGTTTTTTGTGATGGTATAAATGTAACCAAAGTTAGGTGTAGTGCCATTCACAAGGGTAAGGTTTTCTTTCAGTATAGTGGTCTGTCTGCGGCAGATCTCGCTGCTGTTAAAGATGCCTTTGGTTTTGATGAACCACAACTGCTGCAGTACTACAGTATGCTTGGCATGTGTAAGTGGCCAGTAGTTGTTTGTGGCAATTATTTTGCTTTTAAGCAGTCAAATAATAATTGCTATATAAATGTGGCATGTTTAATGCTGCAACACTTGAGTTTAAAGTTTCCTAAGTGGCAATGGCGGAGGCCTGGAAATGAGTTCCGCTCAGGTAAGCCACTAAGGTTCGTGTCCTTGGTCTTAGCGAAGGGCAGCTTTAAATTTAATGAACCTTCTGATTCAACTGATTTTATACGTGTGGAGCTGCGCGAAGCGGATTTGAGTGGTGCCACATGTGATTTGGAATTTATTTGTAAATGTGGTGTGAAGCAAGAGCAGCGCAAAGGTGTTGACGCTGTTATGCATTTTGGTACATTGGATAAAAGTGGTCTTGTCAAGGGTTATAATATCGCATGTACATGCGGTGATAAACTTGTGCATTGCACTCAATTTAATGTACCATTTTTAATCTGCTCCAACACGCCTGAGGGCAAGAAATTGCCTGACGATGTTGTTGCAGCTAACATATTTACTGGTGGTAGTGTGGGCCACTACACGCATGTGAAATGTAAACCCAAGTACCAACTTTATGATGCTTGTAATGTTAGTAAGGTTTCTGAGGCGAAGGGTAATTTTACCGATTGCCTCTACCTTAAAAATTTAAAGCAAACTTTTTCGTCCGTGTTGACGACTTATTATTTAGATGATGTAAAGTGTGTGGCGTATAAGCCAGATTTATCGCAGTATTACTGTGAGTCTGGAAAATATTATACAAAACCCATTATTAAGGCTCAGTTTAGAACGTTTGAGAAGGTTGAGGGTGTCTACACTAATTTTAAATTGGTGGGACATGATATAGCCGAAAAACTCAATGCTAAGCTGGGATTTGATTGTAATTCTCCTTTTATGGAGTATAAAATTACAGAGTGGCCAACAGCTACTGGAGATGTGGTGTTGGCTAGTGATGATTTGTATGTGAGTCGGTATTCAGGCGGGTGCGTTACTTTTGGTAAACCGGTTATCTGGCGTGGCCATGAGGAAGCATCGCTGAAATCCCTCACATATTTTAATAGACCTAGTGTCGTTTGTGAAAATAAATTTAATGTGTTGCCTGTTGATGTCAGTGAACCCACGGATAGGAGGCCTGTGCCGTCTGCAGTCCTTGTTACCGGTGCTGCGAGTGGTGCTGATGCGTCAGCTATATCCACCGAGCCCGGTACTGCCAAGGAGCAAAAGGCGTGTGCTTCTGATAGCGTGGAGGATCAGATTGTTATGGAGGCCCAGAAGAAGTCATCTGTCACAACCGTTGCTGTCAAAGAGGTTAAATTGAATGGTGTTAAGAAGCCTGTTAAGTGGAACTGTAGTGTGGTTGTTAATGACCCCACTAGCGAAACCAAAGTTGTTAAAAGTTTGTCTATTGTTGATGTGTATGATATGTTCCTGACAGGGTGTAGGTATGTGGTCTGGACGGCTAATGAGCTGTCTCGATTAATAAATTCACCTACTGTTAGAGAGTATGTTAAGTGGGGTATGTCGAAGTTAATCATCCCCGCTAATTTGTTATTGTTAAGAGATGAGAAGCAAGAGTTTGTAGCGCCAAAAGTGGTCAAAGCGAAAGCTATTGCCTGCTATGGCGCTGTGAAGTGGTTTCTCCTCTATTGTTTTAGTTGGATAAAGTTTAATACTGATAATAAGGTTATATACACCACAGAAGTAGCTTCAAAGCTTACTTTTAAGTTATGCTGTTTGGCCTTTAAGAATGCCTTACAGACGTTTAATTGGAGCGTTGTGTCTAGGGGTTTCTTCCTAGTGGCAACGGTCTTTTTATTATGGTTTAATTTTTTGTATGCCAATGTTATTTTGAGTGACTTTTATTTGCCTAATATTGGACCTCTCCCTATGTTTGTGGGGCAGATTGTTGCTTGGGTTAAGACTACATTTGGTGTTTTAACCATCTGCGATTTTTACCAGGTGACAGATTTAGGCTATAGGAGTTCGTTTTGTAATGGAAGTATGGTCTGTGAACTATGCTTCTCTGGTTTTGATATGCTGGACAACTATGAGTCCATAAATGTTGTTCAACATGTTGTAGATAGGCGTGTGTCTTTTGACTACATTAGCCTATTTAAATTAGTAGTCGAACTTGTTATCGGCTACTCTCTATATACTGTGTGCTTCTACCCACTGTTTGTCCTTGTTGGAATGCAGTTGTTGACCACATGGTTGCCTGAATTCTTTATGCTGGGGACTATGCATTGGAGCGCTCGTTTGTTTGTTTTTGTTGCTAACATGCTCCCAGCTTTTACGTTACTGCGATTTTATATCGTGGTGACAGCTATGTATAAGGTCTATTGTCTTTGTAGACATGTTATGTATGGATGTAGTAAGCCTGGTTGCTTGTTTTGTTATAAGAGAAACCGTAGTGTCCGCGTTAAGTGTAGCACCGTTGTTGGTGGTTCACTACGCTATTACGATGTAATGGCTAACGGCGGCACAGGTTTCTGTACAAAGCACCAGTGGAACTGTCTTAATTGCAATTCCTGGAAACCAGGCAATACATTCATAACTCATGAAGCAGCAGCGGACCTCTCTAAAGAGTTGAAACGCCCTGTGAATCCAACAGACTCTGCTTATTACTCGGTCATAGAGGTTAAGCAGGTTGGTTGTTCCATGCGTCTGTTCTATGAGAGAGACGGACAGCGTGTTTATGATGATGTTAGTGCTAGTTTGTTTGTGGACATGAATGGTCTGCTGCATTCTAAAGTTAAAGGTGTGCCAGAAACTCATGTTGTAGTCGTTGAGAACGAAGCCGATAAGGCCGGTTTTCTTAACGCTGCTGTTTTCTATGCACAATCTCTTTATAGACCGATGCTGATGGTGGAGAAGAAGTTAATAACTACCGCCAACACTGGTTTGTCTGTTAGTCGAACTATGTTTGACCTCTATGTATACTCCTTGCTGAGGCACCTTGACGTCGATCGCAAGAGCCTAACAAGCTTTGTAAATGCTGCGCACAACTCCCTAAAGGAGGGTGTTCAGCTTGAACAGGTAATGGATACCTTTGTTGGCTGTGCTCGACGTAAGTGTGCTATAGATTCTGATGTTGAGACCAAGTCTATTACCAAGTCCGTTATGGCGGCAGTGAATGCTGGCGTTGAGGTTACGGACGAGAGTTGTAATAACTTGGTGCCCACATATGTTAAAAGCGACACTATCGTTGCAGCTGATTTGGGTGTTCTTATTCAGAATAATGCTAAGCATGTACAGTCTAATGTTGCTAAAGCCGCTAATGTGGCTTGCATTTGGTCTGTGGATGCTTTTAACCAGCTATCTGCTGATTTGCAGCATAGGTTGAGAAAAGCATGTGTAAAGACTGGCTTGAAGATTAAGCTTACGTATAACAAGCAGGAGGCAAATGTTCCTATTTTAACTACACCGTTCTCCCTTAAAGGGGGC >RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus GGCAAGAAAGTCGTGTTTAACGACAAGCCTAAAGTTAAGGAGGTACCCTCCACGCGGAAGATTAAGATTATCTTCGCTCTGGATGCGACCTTTGATAGTGTTCTCTCGAAGGCATGTTCAGAGTTTGAAGTTGATAAAGATGTTACATTGGATGAGCTGCTTGATGTTGTGCTTGACGCAGTTGAGAGTACGCTCAGCCCTTGTAAGGAGCATGGTGTGATAGGCACAAAAGTTTGTGCTCTACTTGAAAGGTTGGTGGACGATTATGTCTATCTTTTTGATGAAGGAGGCGAAGAAGTTATTGCCTCCCGTATGTATTGTTCCTTCTCTGCTCCT---GATGAAGACTGCGTTGCAACAGATGTTGTATATGCAGATGAAAACCAAGATGATGATGCTGACGATCCTGTAGTCCTTGTCGCCGATACCCAAGAAGAGGACGGCGTTGCCAAGGAGCAGGTTGATTCGGCTGATTCGGAAATTTGTGTTGCGCACACTGGTGGTCAA---GAAATGACTGAGCCTGATGCTGTCGGATCTCAAACTCCCATCGCCTCTGCTGAGGAAACCGAAGTCGGTGAGGCATGCGACAGGGAAGGGATTGCTGAGGTCAAGGCAACTGTGTGTGCTGATGCTTTAGATGCCTGCCCCGATCAAGTGGAGGCATTTGATATTGAAAAGGTTGAAGACTCTATCTTAAGTGAGCTTCAAACCGAACTTAATGCGCCCGCGGACAAGACCTATGAGGATGTCTTGGCATTCGATGCCATATACTCAGAGACGTTGTCTGCATTCTATGCTGTGCCGAGTGATGAGACGCACTTTAAAGTGTGTGGATTCTATTCGCCAGCTATAGAGCGTACTAATTGTTGGCTGCGTTCTACTTTGATAGTAATGCAGAGTTTACCTTTGGAATTTAAAGACTTGGGGATGCAAAAGCTCTGGTTGTCTTACAAGGCTGGCTATGATCAATGCTTTGTGGACAAACTAGTTAAGAGCGCGCCCAAGTCTATTATTCTTCCACAAGGTGGCTATGTGGCAGATTTTGCCTATTTTTTCCTAAGCCAGTGTAGCTTCAAAGTTCATGCTAACTGGCGTTGTCTAAAGTGTGGCATGGAGTTAAAGCTTCAAGGCTTGGACGCCATGTTTTTCTATGGAGACGTTGTGTCTCATATGTGTAAGTGTGGTAATAGCATGACCTTGTTGTCTGCAGACATACCTTACACATTGCATTTTGGAGTGCGAGATGACAAATTTTGTGCTTTTTACACGCCGAGAAAAGTCTTTAGGGCTGCTTGTGCGGTTGATGTTAATGATTGCCACTCTATGGCTGTTGTGGATGGCAAGCAAATTGATGGTAAAGTTGTTACCAAATTTAATGGTGACAAATTTGATTTTATGGTGGGTCATGGTATGACATTTAGTATGTCTCCCTTTGAGATCGCCCAGTTATATGGTTCATGTATAACACCAAATGTTTGTTTTGTTAAAGGAGATGTTATAAAGGTTTTGCGCAGAGTTGGTGCTGAAGTCATCGTCAACCCTGCTAATGGGCGCATGGCTCATGGTGCGGGTGTTGCAGGTGCTATAGCTAAAGCAGCGGGCAAAGCTTTTATTAATGAGACTGCCGATATGGTGAAGGCTCAGGGCGTTTGCCAGGTTGGTGGATGCTATGAGTCTACCGGTGGTAAATTATGTAAGAAAGTGCTTAACATTGTAGGACCAGATGCGCGAGGGCATGGCAAGCAATGCTATTCACTTTTAGAGCGTGCTTATCAGCATATTAATAAGTGTGACAATGTTGTCACCACTTTAATTTCGGCTGGTATATTTAGTGTGCCTACTGATGTTTCCTTAACTTATCTACTTGGTGTAGTGACGAAGAATGTCATTCTTGTCAGTAATAACCAGGATGATTTTGATGTGATAGAGAAGTGTCAGGTGACCTCCGTTGCTGGTACCAAAGCGCTATCATTTCAATTGGCCAAAAATTTGTGCCGTGATGTAAAGTTTGTGACGAATGCATGTAGTTCGCTCTTTAGTGAATCTTGCTTTGTCTCAAGCTATGATGTGTTGCAGGAAGTTGAAGCGCTGCGACATGATATACAATTGGATGATGATGCTCGTGTCTTTGTGCAGGCTAATATGGACTGTCTGCCCACAGACTGGCGTCTTGTCAATAAATTTGATAGTGTTGATGGTGTTAGAACCATTAAGTATTTTGAATGTCCGGGCGAGGTTTTTGTATCTAGCCAGGGCAAAAAGTTTGGTTATGTTCAGAATGGTTCATTTAAGGAGGCGAGTGTTAGCCAAATAAGGGCTTTGCTTGCTAATAAGGTTGATGTCTTGTGTACTGTTGATGGTGTTAACTTCCGCTCCTGCTGTGTTGCAGAGGGTGAAGTTTTTGGCAAGACATTAGGTTCAGTTTTTTGTGATGGTATAAATGTAACCAAAGTTAGGTGTAGTGCCATTCACAAGGGTAAGGTTTTCTTTCAGTATAGTGGTCTGTCTGCGGCAGATCTCGCTGCTGTTAAAGATGCCTTTGGTTTTGATGAACCACAACTGCTGCAGTACTACAGTATGCTTGGCATGTGTAAGTGGCCAGTAGTTGTTTGTGGCAATTATTTTGCTTTTAAGCAGTCAAATAATAATTGCTATATAAATGTGGCATGTTTAATGCTGCAACACTTGAGTTTAAAGTTTCCTAAGTGGCAATGGCAGGAGGCCTGGAATGAGTTCCGCTCAGGTAAGCCACTAAGGTTCGTGTCCTTGGTCTTAGCGAAGGGCAGCTTTAAATTTAATGAACCTTCTGATTCAACTGATTTTATACGTGTGGTGCTGCGCGAAGCGGATTTGAGTGGTGCCACATGTGATTTGGAATTTATTTGTAAATGTGGTGTGAAGCAAGAGCAGCGCAAAGGTGTTGACGCTGTTATGCATTTTGGTACATTGGATAAAAGTGGTCTTGTCAAGGGTTATAATATCGCATGTACATGCGGTGATAAACTTGTGCATTGCACTCAATTTAATGTACCATTTTTAATCTGCTCCAACACGCCTGAGGGCAAGAAATTGCCTGACGATGTTGTTGCAGCTAACATATTTACTGGTGGTAGTGTGGGCCATTACACGCATGTGAAATGTAAACCCAAGTACCAACTTTATGATGCTTGTAATGTTAGTAAGGTTTCTGAGGCGAAGGGTAATTTTACCGATTGCCTCTACCTTAAAAATTTAAAGCAAACTTTTTCGTCCGTGTTGACGACTTATTATTTAGATGATGTAAAGTGTGTGGCGTATAAGCCAGATTTATCGCAGTATTACTGTGAGTCTGGAAAATATTATACAAAACCCATTATTAAGGCTCAGTTTAGAACGTTTGAGAAGGTTGAGGGTGTCTACACTAATTTTAAATTGGTGGGACATGATATAGCCGAAAAACTCAATGCTAAGCTGGGATTTGATTGTAATTCTCCTTTTATGGAGTATAAAATTACAGAGTGGCCAACAGCTACTGGAGATGTGGTGTTGGCTAGTGATGATTTGTATGTGAGTCGGTATTCAGGCGGGTGCGTTACTTTTGGTAAACCGGTTATCTGGCGTGGCCATGAGGAAGCATCGCTGAAATCCCTCACATATTTTAATAGACCTAGTGTCGTTTGTGAAAATAAATTTAATGTGTTGCCTGTTGATGTCAGTGAACCCACGGATAGGAGGCCTGTGCCGTCTGCAGTCCTTGTTACCGGTGCTGCGAGTGGTGCTGATGCGTCAGCTATATCCACCGAGCCCGGTACTGCCAAGGAGCAAAAGGCGTGTGCTTCTGATAGCGTGGAGGATCAGATTGTTATGGAGGCCCAGAAGAGGTCATCTGTCACAACCGTTGCTGTCAAAGAGGTTAAATTGAATGGTGTTAAGAAGCCTGTTAAGGTGGAAGATAGTGTGGTTGTTAATGACCCCACTAGCGAAACCAAAGTTGTTAAAAGTTTGTCTATTGTTGATGTGTATGATATGTTCCTGACAGGGTGTAGGTATGTGGTCTGGACGGCTAATGAGCTGTCTCGATTAATAAATTCACCTACTGTTAGAGAGTATGTTAAGTGGGGTATGTCGAAGTTAATCATCCCCGCTAATTTGTTATTGTTAAGAGATGAGAAGCAAGAGTTTGTAGCGCCAAAAGTGGTCAAAGCGAAAGCTATTGCCTGCTATGGCGCTGTGAAGTGGTTTCTCCTCTATTGTTTTAGTTGGATAAAGTTTAATACTGATAATAAGGTTATATACACCACAGAAGTAGCTTCAAAGCTTACTTTTAAGTTATGCTGTTTGGCCTTTAAGAATGCCTTACAGACGTTTAATTGGAGCGTTGTGTCTAGGGGTTTCTTCCTAGTGGCAACGGTCTTTTTATTATGGTTTAATTTTTTGTATGCCAATGTTATTTTGAGTGACTTTTATTTGCCTAATATTGGACCTCTCCCTATGTTTGTGGGGCAGATTGTTGCTTGGGTTAAGACTACATTTGGTGTTTTAACCATCTGCGATTTTTACCAGGTGACAGATTTAGGCTATAGGAGTTCGTTTTGTAATGGAAGTATGGTCTGTGAACTATGCTTCTCTGGTTTTGATATGCTGGACAACTATGATGCCATAAATGTTGTTCAACATGTTGTAGATAGGCGTGTGTCTTTTGACTACATTAGCCTATTTAAATTAGTAGTCGAACTTGTTATCGGCTACTCTCTATATACTGTGTGCTTCTACCCACTGTTTGTCCTTGTTGGAATGCAGTTGTTGACCACATGGTTGCCTGAATTCTTTATGCTGGGGACTATGCATTGGAGCGCTCGTTTGTTTGTTTTTGTTGCTAACATGCTCCCAGCTTTTACGTTACTGCGATTTTATATCGTGGTGACAGCTATGTATAAGGTCTATTGTCTTTGTAGACATGTTATGTATGGATGTAGTAAGCCTGGTTGCTTGTTTTGTTATAAGAGAAACCGTAGTGTCCGCGTTAAGTGTAGCACCGTTGTTGGTGGTTCACTACGCTATTACGATGTAATGGCTAACGGCGGCACAGGTTTCTGTACAAAGCACCAGTGGAACTGTCTTAATTGCAATTCCTGGAAACCAGGCAATACATTCATAACTCATGAAGCAGCAGCGGACCTCTCTAAAGAGTTGAAACGCCCTGTGAATCCAACAGACTCTGCTTATTACTCGGTCATAGAGGTTAAGCAGGTTGGTTGTTCCATGCGTCTGTTCTATGAGAGAGACGGACAGCGTGTTTATGATGATGTTAGTGCTAGTTTGTTTGTGGACATGAATGGTCTGCTGCATTCTAAAGTTAAAGGTGTGCCAGAAACTCATGTTGTAGTCGTTGAGAACGAAGCCGATAAGGCCGGTTTTCTTAACGCTGCTGTTTTCTATGCACAATCTCTTTATAGACCGATGCTGATGGTGGAGAAGAAGTTAATAACTACCGCCAACACTGGTTTGTCTGTTAGTCGAACTATGTTTGACCTCTATGTAGACTCCTTGCTGAGCGTCCTTGACGTCGATCGCAAGAGTCTAACAAGTTTTGTAAATGCTGCGCACAACTCCCTAAAGGAGGGTGTTCAGCTTGAACAGGTAATGGATACCTTTGTTGGCTGTGCTCGACGTAAGTGTGCTATAGATTCTGATGTTGAGACCAAGTCTATTACCAAGTCCGTTATGGCGGCAGTGAATGCTGGCGTTGAGGTTACGGACGAGAGTTGTAATAACTTGGTGCCCACATATGTTAAAAGCGACACTATCGTTGCAGCTGATTTGGGTGTTCTTATTCAGAATAATGCTAAGCATGTACAGTCTAATGTTGCTAAAGCCGCTAATGTGGCTTGCATTTGGTCTGTGGATGCTTTTAACCAGCTATCTGCTGATTTGCAGCATAGGTTGAGAAAAGCATGTGTAAAGACTGGCTTGAAGATTAAGCTTACGTATAACAAGCAGGAGGCAAATGTTCCTATTTTAACTACACCGTTCTCCCTTAAAGGGGGC >SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus GGCAAGAAAGTCGTGTTTAACGACAAGCCTAAAGTTAAGGAGGTACCCTCCACGCGGAAGATTAAGATTATCTTCGCTCTGGATGCGACCTTTGATAGTGTTCTCTCGAAGGCATGTTCAGAGTTTGAAGTTGATAAAGATGTTACATTGGATGAGCTGCTTGATGTTGTGCTTGACGCAGTTGAGAGTACGCTCAGCCCTTGTAAGGAGCATGGTGTGATAGGCACAAAAGTTTGTGCTCTACTTGAAAGGTTGGTGGACGATTATGTCTATCTTTTTGATGAAGGAGGCGAAGAAGTTATTGCCTCCCGTATGTATTGTTCCTTCTCTGCTCCT---GATGAAGACTGCGTTGCAACAGATGTTGTATATGCAGATGAAAACCAAGATGATGATGCTGACGATCCTGTAGTCCTTGTCGCCGATACCCAAGAAGAGGACGGCGTTGCCAAGGAGCAGGTTGATTCGGCTGATTCGGAAATTTGTGTTGCGCACACTGGTGGTCAA---GAAATGACTGAGCCTGATGCTGTCGGATCTCAAACTCCCATCGCCTCTGCTGAGGAAACCGAAGTCGGTGAGGCATGCGACAGGGAAGGGATTGCTGAGGTCAAGGCAACTGTGTGTGCTGATGCTTTAGATGCCTGCCCCGATCAAGTGGAGGCATTTGATATTGAAAAGGTTGAAGACTCTATCTTAAGTGAGCTTCAAACCGAACTTAATGCGCCCGCGGACAAGACCTATGAGGATGTCTTGGCATTCGATGCCATATACTCAGAGACGTTGTCTGCATTCTATGCTGTGCCGAGTGATGAGACGCACTTTAAAGTGTGTGGATTCTATTCGCCAGCTATAGAGCGTACTAATTGTTGGCTGCGTTCTACTTTGATAGTAATGCAGAGTTTACCTTTGGAATTTAAAGACTTGGGGATGCAAAAGCTCTGGTTGTCTTACAAGGCTGGCTATGATCAATGCTTTGTGGACAAACTAGTTAAGAGCGCGCCCAAGTCTATTATTCTTCCACAAGGTGGCTATGTGGCAGATTTTGCCTATTTTTTCCTAAGCCAGTGTAGCTTCAAAGTTCATGCTAACTGGCGTTGTCTAAAGTGTGGCATGGAGTTAAAGCTTCAAGGCTTGGACGCCATGTTTTTCTATGGAGACGTTGTGTCTCATATGTGTAAGTGTGGTAATAGCATGACCTTGTTGTCTGCAGACATACCTTACACATTGCATTTTGGAGTGCGAGATGACAAATTTTGTGCTTTTTACACGCCGAGAAAAGTCTTTAGGGCTGCTTGTGCGGTTGATGTTAATGATTGCCACTCTATGGCTGTTGTGGATGGCAAGCAAATTGATGGTAAAGTTGTTACCAAATTTAATGGTGACAAATTTGATTTTATGGTGGGTCATGGTATGACATTTAGTATGTCTCCCTTTGAGATCGCCCAGTTATATGGTTCATGTATAACACCAAATGTTTGTTTTGTTAAAGGAGATGTTATAAAGGTTTTGCGCAGAGTTGGTGCTGAAGTCATCGTCAACCCTGCTAATGGGCGCATGGCTCATGGTGCGGGTGTTGCAGGTGCTATAGCTAAAGCAGCGGGCAAAGCTTTTATTAATGAGACTGCCGATATGGTGAAGGCTCAGGGCGTTTGCCAGGTTGGTGGATGCTATGAGTCTACCGGTGGTAAATTATGTAAGAAAGTGCTTAACATTGTAGGACCAGATGCGCGAGGGCATGGCAAGCAATGCTATTCACTTTTAGAGCGTGCTTATCAGCATATTAATAAGTGTGACAATGTTGTCACCACTTTAATTTCGGCTGGTATATTTAGTGTGCCTACTGATGTTTCCTTAACTTATCTACTTGGTGTAGTGACGAAGAATGTCATTCTTGTCAGTAATAACCAGGATGATTTTGATGTGATAGAGAAGTGTCAGGTGACCTCCGTTGCTGGTACCAAAGCGCTATCATTTCAATTGGCCAAAAATTTGTGCCGTGATGTAAAGTTTGTGACGAATGCATGTAGTTCGCTCTTTAGTGAATCTTGCTTTGTCTCAAGCTATGATGTGTTGCAGGAAGTTGAAGCGCTGCGACATGATATACAATTGGATGATGATGCTCGTGTCTTTGTGCAGGCTAATATGGACTGTCTGCCCACAGACTGGCGTCTTGTCAATAAATTTGATAGTGTTGATGGTGTTAGAACCATTAAGTATTTTGAATGTCCGGGCGAGGTTTTTGTATCTAGCCAGGGCAAAAAGTTTGGTTATGTTCAGAATGGTTCATTTAAGGAGGCGAGTGTTAGCCAAATAAGGGCTTTGCTTGCTAATAAGGTTGATGTCTTGTGTACTGTTGATGGTGTTAACTTCCGCTCCTGCTGTGTTGCAGAGGGTGAAGTTTTTGGCAAGACATTAGGTTCAGTTTTTTGTGATGGTATAAATGTAACCAAAGTTAGGTGTAGTGCCATTCACAAGGGTAAGGTTTTCTTTCAGTATAGTGGTCTGTCTGCGGCAGATCTCGCTGCTGTTAAAGATGCCTTTGGTTTTGATGAACCACAACTGCTGCAGTACTACAGTATGCTTGGCATGTGTAAGTGGCCAGTAGTTGTTTGTGGCAATTATTTTGCTTTTAAGCAGTCAAATAATAATTGCTATATAAATGTGGCATGTTTAATGCTGCAACACTTGAGTTTAAAGTTTCCTAAGTGGCAATGGCAGGAGGCCTGGAATGAGTTCCGCTCAGGTAAGCCACTAAGGTTCGTGTCCTTGGTCTTAGCGAAGGGCAGCTTTAAATTTAATGAACCTTCTGATTCAACTGATTTTATACGTGTGGTGCTGCGCGAAGCGGATTTGAGTGGTGCCACATGTGATTTGGAATTTATTTGTAAATGTGGTGTGAAGCAAGAGCAGCGCAAAGGTGTTGACGCTGTTATGCATTTTGGTACATTGGATAAAAGTGGTCTTGTCAAGGGTTATAATATCGCATGTACATGCGGTGATAAACTTGTGCATTGCACTCAATTTAATGTACCATTTTTAATCTGCTCCAACACGCCTGAGGGCAAGAAATTGCCTGACGATGTTGTTGCAGCTAACATATTTACTGGTGGTAGTGTGGGCCATTACACGCATGTGAAATGTAAACCCAAGTACCAACTTTATGATGCTTGTAATGTTAGTAAGGTTTCTGAGGCGAAGGGTAATTTTACCGATTGCCTCTACCTTAAAAATTTAAAGCAAACTTTTTCGTCCGTGTTGACGACTTATTATTTAGATGATGTAAAGTGTGTGGCGTATAAGCCAGATTTATCGCAGTATTACTGTGAGTCTGGAAAATATTATACAAAACCCATTATTAAGGCTCAGTTTAGAACGTTTGAGAAGGTTGAGGGTGTCTACACTAATTTTAAATTGGTGGGACATGATATAGCCGAAAAACTCAATGCTAAGCTGGGATTTGATTGTAATTCTCCTTTTATGGAGTATAAAATTACAGAGTGGCCAACAGCTACTGGAGATGTGGTGTTGGCTAGTGATGATTTGTATGTGAGTCGGTATTCAGGCGGGTGCGTTACTTTTGGTAAACCGGTTATCTGGCGTGGCCATGAGGAAGCATCGCTGAAATCCCTCACATATTTTAATAGACCTAGTGTCGTTTGTGAAAATAAATTTAATGTGTTGCCTGTTGATGTCAGTGAACCCACGGATAGGAGGCCTGTGCCGTCTGCAGTCCTTGTTACCGGTGCTGCGAGTGGTGCTGATGCGTCAGCTATATCCACCGAGCCCGGTACTGCCAAGGAGCAAAAGGCGTGTGCTTCTGATAGCGTGGAGGATCAGATTGTTATGGAGGCCCAGAAGAGGTCATCTGTCACAACCGTTGCTGTCAAAGAGGTTAAATTGAATGGTGTTAAGAAGCCTGTTAAGGTGGAAGATAGTGTGGTTGTTAATGACCCCACTAGCGAAACCAAAGTTGTTAAAAGTTTGTCTATTGTTGATGTGTATGATATGTTCCTGACAGGGTGTAGGTATGTGGTCTGGACGGCTAATGAGCTGTCTCGATTAATAAATTCACCTACTGTTAGAGAGTATGTTAAGTGGGGTATGTCGAAGTTAATCATCCCCGCTAATTTGTTATTGTTAAGAGATGAGAAGCAAGAGTTTGTAGCGCCAAAAGTGGTCAAAGCGAAAGCTATTGCCTGCTATGGCGCTGTGAAGTGGTTTCTCCTCTATTGTTTTAGTTGGATAAAGTTTAATACTGATAATAAGGTTATATACACCACAGAAGTAGCTTCAAAGCTTACTTTTAAGTTATGCTGTTTGGCCTTTAAGAATGCCTTACAGACGTTTAATTGGAGCGTTGTGTCTAGGGGTTTCTTCCTAGTGGCAACGGTCTTTTTATTATGGTTTAATTTTTTGTATGCCAATGTTATTTTGAGTGACTTTTATTTGCCTAATATTGGACCTCTCCCTATGTTTGTGGGGCAGATTGTTGCTTGGGTTAAGACTACATTTGGTGTTTTAACCATCTGCGATTTTTACCAGGTGACAGATTTAGGCTATAGGAGTTCGTTTTGTAATGGAAGTATGGTCTGTGAACTATGCTTCTCTGGTTTTGATATGCTGGACAACTATGATGCCATAAATGTTGTTCAACATGTTGTAGATAGGCGTGTGTCTTTTGACTACATTAGCCTATTTAAATTAGTAGTCGAACTTGTTATCGGCTACTCTCTATATACTGTGTGCTTCTACCCACTGTTTGTCCTTGTTGGAATGCAGTTGTTGACCACATGGTTGCCTGAATTCTTTATGCTGGGGACTATGCATTGGAGCGCTCGTTTGTTTGTTTTTGTTGCTAACATGCTCCCAGCTTTTACGTTACTGCGATTTTATATCGTGGTGACAGCTATGTATAAGGTCTATTGTCTTTGTAGACATGTTATGTATGGATGTAGTAAGCCTGGTTGCTTGTTTTGTTATAAGAGAAACCGTAGTGTCCGCGTTAAGTGTAGCACCGTTGTTGGTGGTTCACTACGCTATTACGATGTAATGGCTAACGGCGGCACAGGTTTCTGTACAAAGCACCAGTGGAACTGTCTTAATTGCAATTCCTGGAAACCAGGCAATACATTCATAACTCATGAAGCAGCAGCGGACCTCTCTAAAGAGTTGAAACGCCCTGTGAATCCAACAGACTCTGCTTATTACTCGGTCATAGAGGTTAAGCAGGTTGGTTGTTCCATGCGTCTGTTCTATGAGAGAGACGGACAGCGTGTTTATGATGATGTTAGTGCTAGTTTGTTTGTGGACATGAATGGTCTGCTGCATTCTAAAGTTAAAGGTGTGCCAGAAACTCATGTTGTAGTCGTTGAGAACGAAGCCGATAAGGCCGGTTTTCTTAACGCTGCTGTTTTCTATGCACAATCTCTTTATAGACCGATGCTGATGGTGGAGAAGAAGTTAATAACTACCGCCAACACTGGTTTGTCTGTTAGTCGAACTATGTTTGACCTCTATGTAGACTCCTTGCTGAGCGTCCTTGACGTCGATCGCAAGAGTCTAACAAGTTTTGTAAATGCTGCGCACAACTCCCTAAAGGAGGGTGTTCAGCTTGAACAGGTAATGGATACCTTTGTTGGCTGTGCTCGACGTAAGTGTGCTATAGATTCTGATGTTGAGACCAAGTCTATTACCAAGTCCGTTATGGCGGCAGTGAATGCTGGCGTTGAGGTTACGGACGAGAGTTGTAATAACTTGGTGCCCACATATGTTAAAAGCGACACTATCGTTGCAGCTGATTTGGGTGTTCTTATTCAGAATAATGCTAAGCATGTACAGTCTAATGTTGCTAAAGCCGCTAATGTGGCTTGCATTTGGTCTGTGGATGCTTTTAACCAGCTATCTGCTGATTTGCAGCATAGGTTGAGAAAAGCATGTGTAAAGACTGGCTTGAAGATTAAGCTTACGTATAACAAGCAGGAGGCAAATGTTCCTATTTTAACTACACCGTTCTCCCTTAAAGGGGGC >repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus GGCAAGAAAGTCGTGTTTAACGACAAGCCTAAAGTTAAGGAGGTACCCTCCACGCGGAAGATTAAGATTATCTTCGCTCTGGATGCGACCTTTGATAGTGTTCTCTCGAAGGCATGTTCAGAGTTTGAAGTTGATAAAGATGTTACATTGGATGAGCTGCTTGATGTTGTGCTTGACGCAGTTGAGAGTACGCTCAGCCCTTGTAAGGAGCATGGTGTGATAGGCACAAAAGTTTGTGCTCTACTTGAAAGGTTGGTGGACGATTATGTCTATCTTTTTGATGAAGGAGGCGAAGAAGTTATTGCCTCCCGTATGTATTGTTCCTTCTCTGCTCCT---GATGAAGACTGCGTTGCAACAGATGTTGTATATGCAGATGAAAACCAAGATGATGATGCTGACGATCCTGTAGTCCTTGTCGCCGATACCCAAGAAGAGGACGGCGTTGCCAAGGAGCAGGTTGATTCGGCTGATTCGGAAATTTGTGTTGCGCACACTGGTGGTCAA---GAAATGACTGAGCCTGATGCTGTCGGATCTCAAACTCCCATCGCCTCTGCTGAGGAAACCGAAGTCGGTGAGGCATGCGACAGGGAAGGGATTGCTGAGGTCAAGGCAACTGTGTGTGCTGATGCTTTAGATGCCTGCCCCGATCAAGTGGAGGCATTTGATATTGAAAAGGTTGAAGACTCTATCTTAAGTGAGCTTCAAACCGAACTTAATGCGCCCGCGGACAAGACCTATGAGGATGTCTTGGCATTCGATGCCATATACTCAGAGACGTTGTCTGCATTCTATGCTGTGCCGAGTGATGAGACGCACTTTAAAGTGTGTGGATTCTATTCGCCAGCTATAGAGCGTACTAATTGTTGGCTGCGTTCTACTTTGATAGTAATGCAGAGTTTACCTTTGGAATTTAAAGACTTGGGGATGCAAAAGCTCTGGTTGTCTTACAAGGCTGGCTATGATCAATGCTTTGTGGACAAACTAGTTAAGAGCGCGCCCAAGTCTATTATTCTTCCACAAGGTGGCTATGTGGCAGATTTTGCCTATTTTTTCCTAAGCCAGTGTAGCTTCAAAGTTCATGCTAACTGGCGTTGTCTAAAGTGTGGCATGGAGTTAAAGCTTCAAGGCTTGGACGCCATGTTTTTCTATGGAGACGTTGTGTCTCATATGTGTAAGTGTGGTAATAGCATGACCTTGTTGTCTGCAGACATACCTTACACATTGCATTTTGGAGTGCGAGATGACAAATTTTGTGCTTTTTACACGCCGAGAAAAGTCTTTAGGGCTGCTTGTGCGGTTGATGTTAATGATTGCCACTCTATGGCTGTTGTGGATGGCAAGCAAATTGATGGTAAAGTTGTTACCAAATTTAATGGTGACAAATTTGATTTTATGGTGGGTCATGGTATGACATTTAGTATGTCTCCCTTTGAGATCGCCCAGTTATATGGTTCATGTATAACACCAAATGTTTGTTTTGTTAAAGGAGATGTTATAAAGGTTTTGCGCAGAGTTGGTGCTGAAGTCATCGTCAACCCTGCTAATGGGCGCATGGCTCATGGTGCGGGTGTTGCAGGTGCTATAGCTAAAGCAGCGGGCAAAGCTTTTATTAATGAGACTGCCGATATGGTGAAGGCTCAGGGCGTTTGCCAGGTTGGTGGATGCTATGAGTCTACCGGTGGTAAATTATGTAAGAAAGTGCTTAACATTGTAGGACCAGATGCGCGAGGGCATGGCAAGCAATGCTATTCACTTTTAGAGCGTGCTTATCAGCATATTAATAAGTGTGACAATGTTGTCACCACTTTAATTTCGGCTGGTATATTTAGTGTGCCTACTGATGTTTCCTTAACTTATCTACTTGGTGTAGTGACGAAGAATGTCATTCTTGTCAGTAATAACCAGGATGATTTTGATGTGATAGAGAAGTGTCAGGTGACCTCCGTTGCTGGTACCAAAGCGCTATCATTTCAATTGGCCAAAAATTTGTGCCGTGATGTAAAGTTTGTGACGAATGCATGTAGTTCGCTCTTTAGTGAATCTTGCTTTGTCTCAAGCTATGATGTGTTGCAGGAAGTTGAAGCGCTGCGACATGATATACAATTGGATGATGATGCTCGTGTCTTTGTGCAGGCTAATATGGACTGTCTGCCCACAGACTGGCGTCTTGTCAATAAATTTGATAGTGTTGATGGTGTTAGAACCATTAAGTATTTTGAATGTCCGGGCGAGGTTTTTGTATCTAGCCAGGGCAAAAAGTTTGGTTATGTTCAGAATGGTTCATTTAAGGAGGCGAGTGTTAGCCAAATAAGGGCTTTGCTTGCTAATAAGGTTGATGTCTTGTGTACTGTTGATGGTGTTAACTTCCGCTCCTGCTGTGTTGCAGAGGGTGAAGTTTTTGGCAAGACATTAGGTTCAGTTTTTTGTGATGGTATAAATGTAACCAAAGTTAGGTGTAGTGCCATTCACAAGGGTAAGGTTTTCTTTCAGTATAGTGGTCTGTCTGCGGCAGATCTCGCTGCTGTTAAAGATGCCTTTGGTTTTGATGAACCACAACTGCTGCAGTACTACAGTATGCTTGGCATGTGTAAGTGGCCAGTAGTTGTTTGTGGCAATTATTTTGCTTTTAAGCAGTCAAATAATAATTGCTATATAAATGTGGCATGTTTAATGCTGCAACACTTGAGTTTAAAGTTTCCTAAGTGGCAATGGCAGGAGGCCTGGAATGAGTTCCGCTCAGGTAAGCCACTAAGGTTCGTGTCCTTGGTCTTAGCGAAGGGCAGCTTTAAATTTAATGAACCTTCTGATTCAACTGATTTTATACGTGTGGTGCTGCGCGAAGCGGATTTGAGTGGTGCCACATGTGATTTGGAATTTATTTGTAAATGTGGTGTGAAGCAAGAGCAGCGCAAAGGTGTTGACGCTGTTATGCATTTTGGTACATTGGATAAAAGTGGTCTTGTCAAGGGTTATAATATCGCATGTACATGCGGTGATAAACTTGTGCATTGCACTCAATTTAATGTACCATTTTTAATCTGCTCCAACACGCCTGAGGGCAAGAAATTGCCTGACGATGTTGTTGCAGCTAACATATTTACTGGTGGTAGTGTGGGCCATTACACGCATGTGAAATGTAAACCCAAGTACCAACTTTATGATGCTTGTAATGTTAGTAAGGTTTCTGAGGCGAAGGGTAATTTTACCGATTGCCTCTACCTTAAAAATTTAAAGCAAACTTTTTCGTCCGTGTTGACGACTTATTATTTAGATGATGTAAAGTGTGTGGCGTATAAGCCAGATTTATCGCAGTATTACTGTGAGTCTGGAAAATATTATACAAAACCCATTATTAAGGCTCAGTTTAGAACGTTTGAGAAGGTTGAGGGTGTCTACACTAATTTTAAATTGGTGGGACATGATATAGCCGAAAAACTCAATGCTAAGCTGGGATTTGATTGTAATTCTCCTTTTATGGAGTATAAAATTACAGAGTGGCCAACAGCTACTGGAGATGTGGTGTTGGCTAGTGATGATTTGTATGTGAGTCGGTATTCAGGCGGGTGCGTTACTTTTGGTAAACCGGTTATCTGGCGTGGCCATGAGGAAGCATCGCTGAAATCCCTCACATATTTTAATAGACCTAGTGTCGTTTGTGAAAATAAATTTAATGTGTTGCCTGTTGATGTCAGTGAACCCACGGATAGGAGGCCTGTGCCGTCTGCAGTCCTTGTTACCGGTGCTGCGAGTGGTGCTGATGCGTCAGCTATATCCACCGAGCCCGGTACTGCCAAGGAGCAAAAGGCGTGTGCTTCTGATAGCGTGGAGGATCAGATTGTTATGGAGGCCCAGAAGAGGTCATCTGTCACAACCGTTGCTGTCAAAGAGGTTAAATTGAATGGTGTTAAGAAGCCTGTTAAGGTGGAAGATAGTGTGGTTGTTAATGACCCCACTAGCGAAACCAAAGTTGTTAAAAGTTTGTCTATTGTTGATGTGTATGATATGTTCCTGACAGGGTGTAGGTATGTGGTCTGGACGGCTAATGAGCTGTCTCGATTAATAAATTCACCTACTGTTAGAGAGTATGTTAAGTGGGGTATGTCGAAGTTAATCATCCCCGCTAATTTGTTATTGTTAAGAGATGAGAAGCAAGAGTTTGTAGCGCCAAAAGTGGTCAAAGCGAAAGCTATTGCCTGCTATGGCGCTGTGAAGTGGTTTCTCCTCTATTGTTTTAGTTGGATAAAGTTTAATACTGATAATAAGGTTATATACACCACAGAAGTAGCTTCAAAGCTTACTTTTAAGTTATGCTGTTTGGCCTTTAAGAATGCCTTACAGACGTTTAATTGGAGCGTTGTGTCTAGGGGTTTCTTCCTAGTGGCAACGGTCTTTTTATTATGGTTTAATTTTTTGTATGCCAATGTTATTTTGAGTGACTTTTATTTGCCTAATATTGGACCTCTCCCTATGTTTGTGGGGCAGATTGTTGCTTGGGTTAAGACTACATTTGGTGTTTTAACCATCTGCGATTTTTACCAGGTGACAGATTTAGGCTATAGGAGTTCGTTTTGTAATGGAAGTATGGTCTGTGAACTATGCTTCTCTGGTTTTGATATGCTGGACAACTATGATGCCATAAATGTTGTTCAACATGTTGTAGATAGGCGTGTGTCTTTTGACTACATTAGCCTATTTAAATTAGTAGTCGAACTTGTTATCGGCTACTCTCTATATACTGTGTGCTTCTACCCACTGTTTGTCCTTGTTGGAATGCAGTTGTTGACCACATGGTTGCCTGAATTCTTTATGCTGGGGACTATGCATTGGAGCGCTCGTTTGTTTGTTTTTGTTGCTAACATGCTCCCAGCTTTTACGTTACTGCGATTTTATATCGTGGTGACAGCTATGTATAAGGTCTATTGTCTTTGTAGACATGTTATGTATGGATGTAGTAAGCCTGGTTGCTTGTTTTGTTATAAGAGAAACCGTAGTGTCCGCGTTAAGTGTAGCACCGTTGTTGGTGGTTCACTACGCTATTACGATGTAATGGCTAACGGCGGCACAGGTTTCTGTACAAAGCACCAGTGGAACTGTCTTAATTGCAATTCCTGGAAACCAGGCAATACATTCATAACTCATGAAGCAGCAGCGGACCTCTCTAAAGAGTTGAAACGCCCTGTGAATCCAACAGACTCTGCTTATTACTCGGTCATAGAGGTTAAGCAGGTTGGTTGTTCCATGCGTCTGTTCTATGAGAGAGACGGACAGCGTGTTTATGATGATGTTAGTGCTAGTTTGTTTGTGGACATGAATGGTCTGCTGCATTCTAAAGTTAAAGGTGTGCCAGAAACTCATGTTGTAGTCGTTGAGAACGAAGCCGATAAGGCCGGTTTTCTTAACGCTGCTGTTTTCTATGCACAATCTCTTTATAGACCGATGCTGATGGTGGAGAAGAAGTTAATAACTACCGCCAACACTGGTTTGTCTGTTAGTCGAACTATGTTTGACCTCTATGTAGACTCCTTGCTGAGCGTCCTTGACGTCGATCGCAAGAGTCTAACAAGTTTTGTAAATGCTGCGCACAACTCCCTAAAGGAGGGTGTTCAGCTTGAACAGGTAATGGATACCTTTGTTGGCTGTGCTCGACGTAAGTGTGCTATAGATTCTGATGTTGAGACCAAGTCTATTACCAAGTCCGTTATGGCGGCAGTGAATGCTGGCGTTGAGGTTACGGACGAGAGTTGTAATAACTTGGTGCCCACATATGTTAAAAGCGACACTATCGTTGCAGCTGATTTGGGTGTTCTTATTCAGAATAATGCTAAGCATGTACAGTCTAATGTTGCTAAAGCCGCTAATGTGGCTTGCATTTGGTCTGTGGATGCTTTTAACCAGCTATCTGCTGATTTGCAGCATAGGTTGAGAAAAGCATGTGTAAAGACTGGCTTGAAGATTAAGCTTACGTATAACAAGCAGGAGGCAAATGTTCCTATTTTAACTACACCGTTCTCCCTTAAAGGGGGC
>A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus GKKVEFNDKPKVRKIPSTRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFSAPDDEDCVAADVVDADENQDDDAEDSAVLVADTQEEDGVAKGQVE-ADSEICVAHTGSQEELAEPDAVGSQTPIASAEETEVGEASDREGIAEAKATVCADAVDACPDQVEAFEIEKVEDSILDELQTELNAPADKTYEDVLAFDAVCSEALSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSIILPQGGYVADFAYFFLSQCSFKAYANWRCLECDMELKLQGLDAMFFYGDVVSHMCKCGNSMTLLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVEGKQIDGKVVTKFIGDKFDFMVGYGMTFSMSPFELAQLYGSCITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKAQGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSLQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGGIFVSSQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEADLVAVKDAFGFDEPQLLKYYTMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGATCNLEFVCKCGMKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLVHCTQFNVPFLICSNTPEGRKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTDCLYLKNLKQTFSSVLTTFYLDDVKCVEYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVDGVYTNFKLVGHSIAEKLNAKLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSSGCITFGKPVVWLGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDKGPVPAAVLVTG-VPGADASA---GAGIAKEQKACASASVEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEGSVVVNDPTSETKVVKSLSIVDVYDMFLTGCKYVVWTANELSRLVNSPTVREYVKWGMGKIVTPAKLLLLRDEKQEFVAPKVVKAKAIACYCAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPTFVGQIVAWFKTTFGVSTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRLSFDYISLFKLVVELVIGYSLYTVCFYPLFVLIGMQLLTTWLPEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRVYDDVNASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGFLGAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITKSVMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPILTTPFSLKGG >JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHGVIGTKVCALLERVVDDYVYLFDEGGEEVIASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVAKEQVDSADSEICVAHTGGQ-EMTEHDAVGSQTPIASAEETEVGEACDREGIAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFAYFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMTLLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQIDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGFDEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREADLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIWRGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVKLNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSNLIIPANLLLLRDEKQEFVAPKVVKAKAIACYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAWVKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGFLNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPILTTPFSLKGG >MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVAKEQVDSADSEICVAHTGGQ-EMTEPDAVGSQTPIASAEETEVGEACDREGIAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFAYFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMTLLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQIDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGFDEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREADLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIWRGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVKLNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIACYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAWVKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGFLNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPILTTPFSLKGG >UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVAREQVDSADSEICVAHTGGQ-EMTEPDVVGSQTPIASAEETEVGEACDREGIAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFAYFFLSQCSFKVHANWRCLKCGMELKLQGLDAVFFYGDVVSHMCKCGNSMTLLSADIPYTFDFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQIDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQLAKNLCRDVKFVTNACSSLFSESSFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGFDEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIWRGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKKSSVTTVAVKEVKLNGVKKPVKWNCSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIACYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAWVKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYESINVVQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGFLNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPILTTPFSLKGG >RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVAKEQVDSADSEICVAHTGGQ-EMTEPDAVGSQTPIASAEETEVGEACDREGIAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFAYFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMTLLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQIDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGFDEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREADLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIWRGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVKLNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIACYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAWVKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGFLNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPILTTPFSLKGG >SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVAKEQVDSADSEICVAHTGGQ-EMTEPDAVGSQTPIASAEETEVGEACDREGIAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFAYFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMTLLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQIDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGFDEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREADLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIWRGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVKLNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIACYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAWVKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGFLNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPILTTPFSLKGG >repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus GKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAP-DEDCVATDVVYADENQDDDADDPVVLVADTQEEDGVAKEQVDSADSEICVAHTGGQ-EMTEPDAVGSQTPIASAEETEVGEACDREGIAEVKATVCADALDACPDQVEAFDIEKVEDSILSELQTELNAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSIILPQGGYVADFAYFFLSQCSFKVHANWRCLKCGMELKLQGLDAMFFYGDVVSHMCKCGNSMTLLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVDGKQIDGKVVTKFNGDKFDFMVGHGMTFSMSPFEIAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQLAKNLCRDVKFVTNACSSLFSESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDCLPTDWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGFDEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREADLSGATCDLEFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLVHCTQFNVPFLICSNTPEGKKLPDDVVAANIFTGGSVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHDIAEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIWRGHEEASLKSLTYFNRPSVVCENKFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAISTEPGTAKEQKACASDSVEDQIVMEAQKRSSVTTVAVKEVKLNGVKKPVKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIACYGAVKWFLLYCFSWIKFNTDNKVIYTTEVASKLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAWVKTTFGVLTICDFYQVTDLGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEADKAGFLNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPILTTPFSLKGG
Reading sequence file /data//pss_subsets/A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus.result/original_alignment/codeml/fasta/A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus.result.1
Found 7 sequences of length 6030
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 2.1%
Found 4 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0%100.0%
Using a window size of 80 with k as 1
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 289 polymorphic sites
**p-Value(s)**
----------
NSS: 1.00e+00 (1000 permutations)
Max Chi^2: 4.28e-01 (1000 permutations)
PHI (Permutation): 1.00e+00 (1000 permutations)
PHI (Normal): 1.00e+00
#NEXUS
[ID: 9216024850]
begin taxa;
dimensions ntax=7;
taxlabels
A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus
JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus
MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus
UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus
RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus
SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus
repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus
;
end;
begin trees;
translate
1 A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus,
2 JHM_WU_Dns2_nsp3_VIPR_ALG4_397136010_2686_8709_1_1947_08_14_USA_Unknown_Murine_coronavirus,
3 MHV_JHM_IA_nsp3_VIPR_ALG4_225403289_2686_8709_1_NA_USA_Mouse_Murine_coronavirus,
4 UNKNOWN_AC_000192_nsp3_VIPR_ALG4_YP_209230_1_2711_8734_1_NA_NA_Unknown_Murine_coronavirus,
5 RJHM_A_nsp3_VIPR_ALG4_225403216_2664_8687_1_NA_USA_Mouse_Murine_coronavirus,
6 SA59_RJHM_nsp3_VIPR_ALG4_225403245_2664_8687_1_NA_USA_Mouse_Murine_coronavirus,
7 repJHM_RA59_nsp3_VIPR_ALG4_225403300_2647_8670_1_NA_USA_Mouse_Murine_coronavirus
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:1.472249e-01,2:1.029442e-03,3:1.287730e-04,4:6.887615e-03,5:1.266820e-04,6:1.303174e-04,7:1.233802e-04);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:1.472249e-01,2:1.029442e-03,3:1.287730e-04,4:6.887615e-03,5:1.266820e-04,6:1.303174e-04,7:1.233802e-04);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -10234.43 -10247.97
2 -10234.49 -10248.59
--------------------------------------
TOTAL -10234.46 -10248.33
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.158456 0.000322 0.127022 0.195257 0.156952 1113.92 1231.36 1.000
r(A<->C){all} 0.038958 0.000248 0.012146 0.073098 0.037322 770.46 870.81 1.001
r(A<->G){all} 0.279579 0.001221 0.208966 0.344428 0.278469 702.64 784.55 1.000
r(A<->T){all} 0.045200 0.000130 0.024017 0.068328 0.044547 1073.13 1077.79 1.000
r(C<->G){all} 0.044962 0.000220 0.018997 0.075759 0.043610 841.03 899.91 1.000
r(C<->T){all} 0.534129 0.001597 0.463716 0.616886 0.534248 603.21 640.30 1.001
r(G<->T){all} 0.057172 0.000148 0.032631 0.080293 0.056525 1048.14 1101.51 1.000
pi(A){all} 0.250592 0.000029 0.240554 0.261593 0.250616 901.71 1011.59 1.000
pi(C){all} 0.168827 0.000021 0.160352 0.178360 0.168757 1093.57 1169.83 1.000
pi(G){all} 0.256898 0.000031 0.246232 0.267723 0.256937 873.80 954.89 1.002
pi(T){all} 0.323683 0.000036 0.312128 0.335154 0.323595 884.96 916.92 1.000
alpha{1,2} 0.040636 0.000766 0.000031 0.092809 0.037057 1197.69 1241.21 1.000
alpha{3} 4.542070 2.717312 1.858302 7.986196 4.260098 1456.43 1478.72 1.000
pinvar{all} 0.632882 0.001193 0.564459 0.693558 0.636113 1167.33 1260.95 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/A59_nsp3_VIPR_ALG4_226693970_2686_8700_1_NA_USA_Mouse_Murine_coronavirus.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 7 ls = 2003
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 93 91 91 91 91 91 | Ser TCT 37 40 39 38 39 39 | Tyr TAT 53 58 58 58 58 58 | Cys TGT 55 58 58 59 58 58
TTC 23 23 23 24 23 23 | TCC 14 16 16 17 16 16 | TAC 23 18 18 19 18 18 | TGC 29 25 25 24 25 25
Leu TTA 27 31 31 31 31 31 | TCA 20 17 17 18 17 17 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 56 51 52 51 52 52 | TCG 13 10 11 11 11 11 | TAG 0 0 0 0 0 0 | Trp TGG 22 22 22 22 22 22
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 36 33 33 33 33 33 | Pro CCT 25 25 26 27 26 26 | His CAT 21 24 23 21 23 23 | Arg CGT 18 16 16 16 16 16
CTC 15 14 14 14 14 14 | CCC 15 14 14 14 14 14 | CAC 6 7 7 9 7 7 | CGC 8 10 10 10 10 10
CTA 15 15 15 15 15 15 | CCA 18 16 16 16 16 16 | Gln CAA 29 26 26 25 26 26 | CGA 8 7 7 7 7 7
CTG 21 23 23 23 23 23 | CCG 6 7 7 7 7 7 | CAG 32 36 36 35 36 36 | CGG 1 2 2 3 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 37 32 32 32 32 32 | Thr ACT 34 35 35 35 35 35 | Asn AAT 63 65 64 64 64 64 | Ser AGT 40 39 39 37 39 39
ATC 11 14 14 14 14 14 | ACC 27 25 25 25 25 25 | AAC 23 21 21 23 21 21 | AGC 15 17 17 19 17 17
ATA 21 25 25 25 25 25 | ACA 26 29 29 29 29 29 | Lys AAA 58 58 58 58 58 58 | Arg AGA 10 12 12 12 12 12
Met ATG 38 40 40 39 40 40 | ACG 18 18 18 18 18 18 | AAG 87 86 87 86 87 87 | AGG 14 14 14 16 14 14
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 101 112 111 111 111 111 | Ala GCT 75 72 72 71 72 72 | Asp GAT 103 98 98 98 98 98 | Gly GGT 58 63 63 63 63 63
GTC 36 37 38 38 38 38 | GCC 27 27 27 25 27 27 | GAC 30 34 34 32 34 34 | GGC 31 32 32 32 32 32
GTA 31 23 23 23 23 23 | GCA 33 29 29 29 29 29 | Glu GAA 46 41 41 41 41 41 | GGA 17 17 17 18 17 17
GTG 63 63 62 61 62 62 | GCG 22 25 25 25 25 25 | GAG 56 56 56 57 56 56 | GGG 13 9 9 9 9 9
--------------------------------------------------------------------------------------------------------------------------------------
------------------------------------------------------
Phe TTT 91 | Ser TCT 39 | Tyr TAT 58 | Cys TGT 58
TTC 23 | TCC 16 | TAC 18 | TGC 25
Leu TTA 31 | TCA 17 | *** TAA 0 | *** TGA 0
TTG 52 | TCG 11 | TAG 0 | Trp TGG 22
------------------------------------------------------
Leu CTT 33 | Pro CCT 26 | His CAT 23 | Arg CGT 16
CTC 14 | CCC 14 | CAC 7 | CGC 10
CTA 15 | CCA 16 | Gln CAA 26 | CGA 7
CTG 23 | CCG 7 | CAG 36 | CGG 2
------------------------------------------------------
Ile ATT 32 | Thr ACT 35 | Asn AAT 64 | Ser AGT 39
ATC 14 | ACC 25 | AAC 21 | AGC 17
ATA 25 | ACA 29 | Lys AAA 58 | Arg AGA 12
Met ATG 40 | ACG 18 | AAG 87 | AGG 14
------------------------------------------------------
Val GTT 111 | Ala GCT 72 | Asp GAT 98 | Gly GGT 63
GTC 38 | GCC 27 | GAC 34 | GGC 32
GTA 23 | GCA 29 | Glu GAA 41 | GGA 17
GTG 62 | GCG 25 | GAG 56 | GGG 9
------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C1
position 1: T:0.23215 C:0.13679 A:0.26061 G:0.37044
position 2: T:0.31153 C:0.20469 A:0.31453 G:0.16925
position 3: T:0.42386 C:0.16625 A:0.17923 G:0.23065
Average T:0.32252 C:0.16925 A:0.25146 G:0.25678
#2: C2
position 1: T:0.22966 C:0.13729 A:0.26460 G:0.36845
position 2: T:0.31303 C:0.20220 A:0.31353 G:0.17124
position 3: T:0.42986 C:0.16675 A:0.17274 G:0.23065
Average T:0.32418 C:0.16875 A:0.25029 G:0.25678
#3: C3
position 1: T:0.23015 C:0.13729 A:0.26460 G:0.36795
position 2: T:0.31303 C:0.20270 A:0.31303 G:0.17124
position 3: T:0.42836 C:0.16725 A:0.17274 G:0.23165
Average T:0.32385 C:0.16908 A:0.25012 G:0.25695
#4: C4
position 1: T:0.23115 C:0.13729 A:0.26560 G:0.36595
position 2: T:0.31203 C:0.20220 A:0.31253 G:0.17324
position 3: T:0.42636 C:0.16925 A:0.17324 G:0.23115
Average T:0.32318 C:0.16958 A:0.25046 G:0.25678
#5: C5
position 1: T:0.23015 C:0.13729 A:0.26460 G:0.36795
position 2: T:0.31303 C:0.20270 A:0.31303 G:0.17124
position 3: T:0.42836 C:0.16725 A:0.17274 G:0.23165
Average T:0.32385 C:0.16908 A:0.25012 G:0.25695
#6: C6
position 1: T:0.23015 C:0.13729 A:0.26460 G:0.36795
position 2: T:0.31303 C:0.20270 A:0.31303 G:0.17124
position 3: T:0.42836 C:0.16725 A:0.17274 G:0.23165
Average T:0.32385 C:0.16908 A:0.25012 G:0.25695
#7: C7
position 1: T:0.23015 C:0.13729 A:0.26460 G:0.36795
position 2: T:0.31303 C:0.20270 A:0.31303 G:0.17124
position 3: T:0.42836 C:0.16725 A:0.17274 G:0.23165
Average T:0.32385 C:0.16908 A:0.25012 G:0.25695
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 639 | Ser S TCT 271 | Tyr Y TAT 401 | Cys C TGT 404
TTC 162 | TCC 111 | TAC 132 | TGC 178
Leu L TTA 213 | TCA 123 | *** * TAA 0 | *** * TGA 0
TTG 366 | TCG 78 | TAG 0 | Trp W TGG 154
------------------------------------------------------------------------------
Leu L CTT 234 | Pro P CCT 181 | His H CAT 158 | Arg R CGT 114
CTC 99 | CCC 99 | CAC 50 | CGC 68
CTA 105 | CCA 114 | Gln Q CAA 184 | CGA 50
CTG 159 | CCG 48 | CAG 247 | CGG 14
------------------------------------------------------------------------------
Ile I ATT 229 | Thr T ACT 244 | Asn N AAT 448 | Ser S AGT 272
ATC 95 | ACC 177 | AAC 151 | AGC 119
ATA 171 | ACA 200 | Lys K AAA 406 | Arg R AGA 82
Met M ATG 277 | ACG 126 | AAG 607 | AGG 100
------------------------------------------------------------------------------
Val V GTT 768 | Ala A GCT 506 | Asp D GAT 691 | Gly G GGT 436
GTC 263 | GCC 187 | GAC 232 | GGC 223
GTA 169 | GCA 207 | Glu E GAA 292 | GGA 120
GTG 435 | GCG 172 | GAG 393 | GGG 67
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.23051 C:0.13722 A:0.26418 G:0.36809
position 2: T:0.31267 C:0.20284 A:0.31324 G:0.17124
position 3: T:0.42764 C:0.16732 A:0.17374 G:0.23130
Average T:0.32361 C:0.16913 A:0.25039 G:0.25688
Model 1: NearlyNeutral (2 categories)
TREE # 1: (1, 2, 3, 4, 5, 6, 7); MP score: 396
lnL(ntime: 7 np: 10): -9864.954228 +0.000000
8..1 8..2 8..3 8..4 8..5 8..6 8..7
0.242355 0.002598 0.000004 0.018442 0.000004 0.000004 0.000004 3.460118 0.799485 0.000001
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.263411
(1: 0.242355, 2: 0.002598, 3: 0.000004, 4: 0.018442, 5: 0.000004, 6: 0.000004, 7: 0.000004);
(C1: 0.242355, C2: 0.002598, C3: 0.000004, C4: 0.018442, C5: 0.000004, C6: 0.000004, C7: 0.000004);
Detailed output identifying parameters
kappa (ts/tv) = 3.46012
MLEs of dN/dS (w) for site classes (K=2)
p: 0.79948 0.20052
w: 0.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
8..1 0.242 4541.4 1467.6 0.2005 0.0409 0.2041 185.9 299.6
8..2 0.003 4541.4 1467.6 0.2005 0.0004 0.0022 2.0 3.2
8..3 0.000 4541.4 1467.6 0.2005 0.0000 0.0000 0.0 0.0
8..4 0.018 4541.4 1467.6 0.2005 0.0031 0.0155 14.1 22.8
8..5 0.000 4541.4 1467.6 0.2005 0.0000 0.0000 0.0 0.0
8..6 0.000 4541.4 1467.6 0.2005 0.0000 0.0000 0.0 0.0
8..7 0.000 4541.4 1467.6 0.2005 0.0000 0.0000 0.0 0.0
Time used: 0:04
Model 2: PositiveSelection (3 categories)
TREE # 1: (1, 2, 3, 4, 5, 6, 7); MP score: 396
lnL(ntime: 7 np: 12): -9863.401269 +0.000000
8..1 8..2 8..3 8..4 8..5 8..6 8..7
0.282633 0.002660 0.000004 0.019609 0.000004 0.000004 0.000004 3.573858 0.827373 0.168668 0.021851 27.144071
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.304918
(1: 0.282633, 2: 0.002660, 3: 0.000004, 4: 0.019609, 5: 0.000004, 6: 0.000004, 7: 0.000004);
(C1: 0.282633, C2: 0.002660, C3: 0.000004, C4: 0.019609, C5: 0.000004, C6: 0.000004, C7: 0.000004);
Detailed output identifying parameters
kappa (ts/tv) = 3.57386
MLEs of dN/dS (w) for site classes (K=3)
p: 0.82737 0.16867 0.00396
w: 0.02185 1.00000 27.14407
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
8..1 0.283 4535.3 1473.7 0.2942 0.0593 0.2016 269.0 297.1
8..2 0.003 4535.3 1473.7 0.2942 0.0006 0.0019 2.5 2.8
8..3 0.000 4535.3 1473.7 0.2942 0.0000 0.0000 0.0 0.0
8..4 0.020 4535.3 1473.7 0.2942 0.0041 0.0140 18.7 20.6
8..5 0.000 4535.3 1473.7 0.2942 0.0000 0.0000 0.0 0.0
8..6 0.000 4535.3 1473.7 0.2942 0.0000 0.0000 0.0 0.0
8..7 0.000 4535.3 1473.7 0.2942 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
1303 V 0.530 14.858
1305 G 0.738 20.296
1363 G 0.766 21.033
1840 V 0.627 17.385
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
87 G 0.537 1.408 +- 0.878
231 D 0.572 1.505 +- 0.762
501 V 0.517 1.368 +- 0.894
503 L 0.666 1.641 +- 0.823
505 N 0.568 1.499 +- 0.759
530 K 0.654 1.626 +- 0.818
533 S 0.607 1.560 +- 0.792
905 E 0.620 1.580 +- 0.804
998 S 0.569 1.501 +- 0.760
1140 S 0.569 1.501 +- 0.760
1248 P 0.661 1.635 +- 0.817
1255 G 0.522 1.389 +- 0.836
1279 R 0.574 1.481 +- 0.855
1281 E 0.738 1.721 +- 0.814
1303 V 0.639 1.606 +- 0.813
1304 E 0.630 1.593 +- 0.807
1305 G 0.711 1.691 +- 0.810
1363 G 0.677 1.657 +- 0.825
1365 I 0.563 1.458 +- 0.874
1795 G 0.639 1.604 +- 0.807
1839 N 0.641 1.608 +- 0.810
1840 V 0.651 1.623 +- 0.817
1974 S 0.660 1.634 +- 0.818
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.709 0.210 0.054 0.022 0.005 0.001 0.000 0.000 0.000 0.000
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.182
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.757 0.057
sum of density on p0-p1 = 1.000000
Time used: 0:14
Model 7: beta (10 categories)
TREE # 1: (1, 2, 3, 4, 5, 6, 7); MP score: 396
lnL(ntime: 7 np: 10): -9864.954612 +0.000000
8..1 8..2 8..3 8..4 8..5 8..6 8..7
0.242321 0.002598 0.000004 0.018438 0.000004 0.000004 0.000004 3.458530 0.005000 0.020154
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.263372
(1: 0.242321, 2: 0.002598, 3: 0.000004, 4: 0.018438, 5: 0.000004, 6: 0.000004, 7: 0.000004);
(C1: 0.242321, C2: 0.002598, C3: 0.000004, C4: 0.018438, C5: 0.000004, C6: 0.000004, C7: 0.000004);
Detailed output identifying parameters
kappa (ts/tv) = 3.45853
Parameters in M7 (beta):
p = 0.00500 q = 0.02015
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
8..1 0.242 4541.5 1467.5 0.2000 0.0409 0.2043 185.6 299.8
8..2 0.003 4541.5 1467.5 0.2000 0.0004 0.0022 2.0 3.2
8..3 0.000 4541.5 1467.5 0.2000 0.0000 0.0000 0.0 0.0
8..4 0.018 4541.5 1467.5 0.2000 0.0031 0.0155 14.1 22.8
8..5 0.000 4541.5 1467.5 0.2000 0.0000 0.0000 0.0 0.0
8..6 0.000 4541.5 1467.5 0.2000 0.0000 0.0000 0.0 0.0
8..7 0.000 4541.5 1467.5 0.2000 0.0000 0.0000 0.0 0.0
Time used: 0:27
Model 8: beta&w>1 (11 categories)
TREE # 1: (1, 2, 3, 4, 5, 6, 7); MP score: 396
lnL(ntime: 7 np: 12): -9864.070479 +0.000000
8..1 8..2 8..3 8..4 8..5 8..6 8..7
0.249057 0.002613 0.000004 0.018615 0.000004 0.000004 0.000004 3.544353 0.938504 8.520195 98.823021 2.425342
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.270302
(1: 0.249057, 2: 0.002613, 3: 0.000004, 4: 0.018615, 5: 0.000004, 6: 0.000004, 7: 0.000004);
(C1: 0.249057, C2: 0.002613, C3: 0.000004, C4: 0.018615, C5: 0.000004, C6: 0.000004, C7: 0.000004);
Detailed output identifying parameters
kappa (ts/tv) = 3.54435
Parameters in M8 (beta&w>1):
p0 = 0.93850 p = 8.52020 q = 98.82302
(p1 = 0.06150) w = 2.42534
MLEs of dN/dS (w) for site classes (K=11)
p: 0.09385 0.09385 0.09385 0.09385 0.09385 0.09385 0.09385 0.09385 0.09385 0.09385 0.06150
w: 0.04154 0.05296 0.06064 0.06726 0.07358 0.08004 0.08706 0.09529 0.10622 0.12612 2.42534
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
8..1 0.249 4536.8 1472.2 0.2234 0.0448 0.2007 203.4 295.5
8..2 0.003 4536.8 1472.2 0.2234 0.0005 0.0021 2.1 3.1
8..3 0.000 4536.8 1472.2 0.2234 0.0000 0.0000 0.0 0.0
8..4 0.019 4536.8 1472.2 0.2234 0.0034 0.0150 15.2 22.1
8..5 0.000 4536.8 1472.2 0.2234 0.0000 0.0000 0.0 0.0
8..6 0.000 4536.8 1472.2 0.2234 0.0000 0.0000 0.0 0.0
8..7 0.000 4536.8 1472.2 0.2234 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
24 T 0.509 1.276
85 L 0.518 1.297
87 G 0.799 1.954
103 P 0.549 1.371
136 A 0.508 1.274
193 S 0.560 1.397
210 V 0.556 1.388
231 D 0.923 2.245
255 C 0.554 1.382
407 L 0.518 1.297
478 L 0.572 1.425
501 V 0.760 1.865
503 L 0.973* 2.363
505 N 0.920 2.239
530 K 0.970* 2.355
533 S 0.947 2.301
540 S 0.559 1.395
558 A 0.520 1.302
580 Q 0.567 1.412
681 C 0.551 1.376
822 Y 0.545 1.362
835 E 0.506 1.269
854 K 0.534 1.335
904 Q 0.566 1.410
905 E 0.954* 2.317
907 W 0.559 1.393
998 S 0.921 2.240
1096 E 0.506 1.269
1140 S 0.921 2.240
1186 S 0.514 1.289
1196 V 0.500 1.256
1248 P 0.973* 2.363
1255 G 0.793 1.941
1256 A 0.576 1.434
1279 R 0.864 2.107
1280 Q 0.556 1.386
1281 E 0.998** 2.421
1282 P 0.574 1.428
1285 S 0.578 1.439
1303 V 0.963* 2.339
1304 E 0.959* 2.330
1305 G 0.997** 2.418
1363 G 0.978* 2.375
1365 I 0.839 2.050
1366 V 0.516 1.294
1367 T 0.531 1.329
1501 S 0.559 1.395
1552 L 0.518 1.298
1795 G 0.964* 2.342
1839 N 0.965* 2.344
1840 V 0.969* 2.353
1897 S 0.529 1.324
1974 S 0.973* 2.361
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
87 G 0.701 2.049 +- 1.202
231 D 0.758 2.213 +- 1.071
501 V 0.668 1.966 +- 1.239
503 L 0.895 2.528 +- 0.844
505 N 0.752 2.199 +- 1.078
530 K 0.881 2.498 +- 0.873
533 S 0.818 2.355 +- 0.990
905 E 0.838 2.399 +- 0.959
998 S 0.754 2.203 +- 1.076
1140 S 0.754 2.203 +- 1.076
1248 P 0.890 2.516 +- 0.854
1255 G 0.666 1.969 +- 1.215
1279 R 0.761 2.203 +- 1.118
1281 E 0.960* 2.667 +- 0.658
1303 V 0.863 2.457 +- 0.912
1304 E 0.851 2.430 +- 0.934
1305 G 0.944 2.634 +- 0.704
1363 G 0.907 2.555 +- 0.814
1365 I 0.744 2.158 +- 1.149
1795 G 0.863 2.457 +- 0.910
1839 N 0.867 2.464 +- 0.903
1840 V 0.879 2.493 +- 0.879
1974 S 0.889 2.515 +- 0.856
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000
p : 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.000 0.002 0.033 0.118 0.203 0.235 0.222 0.187
ws: 0.031 0.714 0.240 0.015 0.001 0.000 0.000 0.000 0.000 0.000
Time used: 1:18
Model 1: NearlyNeutral -9864.954228 Model 2: PositiveSelection -9863.401269 Model 7: beta -9864.954612 Model 8: beta&w>1 -9864.070479 Model 2 vs 1 3.105918 Model 8 vs 7 1.768266
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
