--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -4066.57 -4093.35
2 -4064.60 -4097.90
--------------------------------------
TOTAL -4065.16 -4097.22
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.437964 0.001914 0.355542 0.524915 0.434708 1328.03 1371.98 1.001
r(A<->C){all} 0.102679 0.000414 0.062191 0.139893 0.102016 716.84 822.05 1.000
r(A<->G){all} 0.282874 0.001322 0.212033 0.354075 0.281904 599.73 673.53 1.000
r(A<->T){all} 0.057600 0.000147 0.034269 0.082270 0.056877 968.59 997.28 1.000
r(C<->G){all} 0.044771 0.000207 0.018836 0.072071 0.044060 963.13 1021.69 1.001
r(C<->T){all} 0.475030 0.001515 0.406121 0.554614 0.474503 597.16 620.82 1.000
r(G<->T){all} 0.037046 0.000105 0.018239 0.057271 0.036306 1197.02 1208.72 1.002
pi(A){all} 0.255817 0.000122 0.233358 0.276316 0.255880 964.46 1044.54 1.000
pi(C){all} 0.183135 0.000085 0.165362 0.200939 0.182872 1043.14 1083.57 1.002
pi(G){all} 0.234083 0.000116 0.211600 0.253639 0.234092 907.97 989.04 1.001
pi(T){all} 0.326966 0.000137 0.304612 0.349515 0.326663 1155.44 1233.85 1.000
alpha{1,2} 0.187820 0.000960 0.134238 0.249917 0.183866 1215.26 1332.56 1.000
alpha{3} 3.923657 2.216696 1.560366 6.920324 3.655199 1251.52 1376.26 1.000
pinvar{all} 0.676020 0.000762 0.624873 0.729291 0.677365 1259.36 1299.90 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -3930.529178
Model 2: PositiveSelection -3930.520906
Model 7: beta -3932.113518
Model 8: beta&w>1 -3930.490128
Model 2 vs 1 .016544
Model 8 vs 7 3.246780
-- Starting log on Wed Nov 02 20:11:27 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.10 sec, SCORE=1000, Nseq=24, Len=521
C1 CTTNLFKDCSKSYIGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C2 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C3 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C4 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C5 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C6 CTTNLFKDCSRSYAGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C7 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C8 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C9 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C10 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C11 CTTNLFKDCSRSYEGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C12 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVSY
C13 CTTNLFKDCSRSYAGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C14 CTTNLFKDCSKSYDGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSSVTY
C15 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C16 CTTNLFKDCSRSYAGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C17 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C18 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C19 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C20 CTTNLFKDCSRSYEGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C21 CTTNLFKDCSKSYVGIPP--CAFLLAVDDKYKVSGNLAVCLNVADSAVTY
C22 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C23 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C24 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
**********:** * * .. :*********.*:**********:*:*
C1 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C2 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C3 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C4 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C5 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C6 SRLISLMGFKLDLTLDGYCKLFITRDEAIRRVRAWVGFDAEGAHATRDSI
C7 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C8 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C9 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C10 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C11 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C12 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C13 SRLISLMGFKLDLTLDGYCKLFITRDEAIRRVRAWVGFDAEGAHATRDSI
C14 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C15 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C16 SRLISLMGFKLDLTLDGYCKLFITRDEAIRRVRAWVGFDAEGAHATRDSI
C17 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C18 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C19 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C20 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C21 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C22 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C23 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C24 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
*****************************:*************** ****
C1 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C2 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C3 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C4 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C5 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVP
C6 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVP
C7 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVP
C8 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C9 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C10 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C11 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGDQFKHLVP
C12 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C13 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVP
C14 GTNFPLQLGFSTGIDFVVEATGMFAEREGYVFKKAAARAPPGEQFKHLVP
C15 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C16 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVP
C17 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C18 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C19 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C20 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGDQFKHLVP
C21 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C22 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C23 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C24 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
***************************:*******.******:*****:*
C1 LLSRGQKWDEVRIRIVPMVSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C2 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C3 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C4 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C5 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C6 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C7 LMSRGQKWEVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C8 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C9 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C10 LMARGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C11 LMSRGQKWDVVRTRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C12 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C13 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C14 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C15 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C16 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C17 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C18 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C19 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C20 LMSRGQKWDVVRTRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C21 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C22 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C23 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C24 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
*::*****: ** *** *:*******************************
C1 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIEQWGYTG
C2 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C3 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C4 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C5 GKEVMCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C6 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C7 GKEVMCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C8 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C9 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C10 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C11 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C12 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C13 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C14 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C15 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C16 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C17 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C18 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C19 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C20 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C21 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C22 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C23 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C24 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
*:**:****.*********************************:******
C1 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C2 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C3 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C4 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C5 SLTSNHDQICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C6 SLTSNHDLICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWSLEYPIISN
C7 SLTSNHDQICSMHKGAHVASSDAIMTRCLAVHDCFCKSVNWNVEYPIISN
C8 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C9 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C10 SLTSNHDQICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNVEYPIISN
C11 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKFVNWNLEYPIISN
C12 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C13 SLTSNHDLICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWSLEYPIISN
C14 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIILN
C15 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C16 SLTSNHDLICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWSLEYPIISN
C17 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C18 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C19 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C20 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKFVNWNLEYPIISN
C21 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C22 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C23 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C24 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
******* ***:************************* ***.:***** *
C1 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C2 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C3 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C4 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C5 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C6 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C7 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C8 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C9 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C10 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C11 EVSVNASCRSLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C12 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C13 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C14 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C15 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C16 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C17 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C18 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C19 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C20 EVSVNASCRSLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C21 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C22 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C23 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C24 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
*****:*** ****************************************
C1 SPVVKSVKQFVYKYEAHKDLFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C2 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C3 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C4 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C5 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C6 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C7 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C8 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C9 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C10 SPVVKSVKQFVYKYEAHKDLFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C11 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C12 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C13 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C14 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C15 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C16 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C17 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C18 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C19 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C20 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C21 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C22 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C23 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C24 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
******************* ******************************
C1 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C2 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C3 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C4 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C5 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C6 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C7 NKLNLPGCNGGSLYVNKHAFHTIPFTRAAFENLKPMPFFYYSDTPCVYME
C8 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C9 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C10 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C11 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C12 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C13 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C14 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C15 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C16 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C17 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C18 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C19 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C20 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C21 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C22 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C23 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C24 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
.********************* ***************************
C1 GMDSKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C2 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C3 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C4 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C5 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C6 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEDYREYLESYNTATTAGF
C7 GMESKQVDYVPLRSATCITRCNLGGAVCVKHAEEYREYLESYNTATTAGF
C8 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C9 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C10 GMESKQVDYVPLRSATCITRCNLGGAVCVKHAEEYREYLESYNTATTAGF
C11 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C12 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C13 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEDYREYLESYNTATTAGF
C14 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C15 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C16 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEDYREYLESYNTATTAGF
C17 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C18 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C19 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C20 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C21 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C22 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C23 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C24 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
**:*************************:****:****************
C1 TFWVYKTFDFYNLWNTFAKLQ
C2 TFWVYKTFDFYNLWNTFTRLQ
C3 TFWVYKTFDFYNLWNTFTRLQ
C4 TFWVYKTFDFYNLWNTFTRLQ
C5 TFWVYKTFDFYNLWNTFTRLQ
C6 TFWVYKTFDFYNLWNTFTRLQ
C7 TFWVYKTFDFYNLWNTFTRLQ
C8 TFWVYKTFDFYNLWNTFTRLQ
C9 TFWVYKTFDFYNLWNTFTRLQ
C10 TFWVYRTFDFYNLWNTFTRLQ
C11 TFWVYKTFDFYNLWNTFTRLQ
C12 TFWVYKTFDFYNLWNTFTRLQ
C13 TFWVYKTFDFYNLWNTFTRLQ
C14 TFWVYKTFDFYNLWNTFTRLQ
C15 TFWVYKTFDFYNLWNTFTRLQ
C16 TFWVYKTFDFYNLWNTFTRLQ
C17 TFWVYKTFDFYNLWNTFTRLQ
C18 TFWVYKTFDFYNLWNTFTRLQ
C19 TFWVYKTFDFYNLWNTFTRLQ
C20 TFWVYKTFDFYNLWNTFTRLQ
C21 TFWVYKTFDFYNLWNTFTRLQ
C22 TFWVYKTFDFYNLWNTFTRLQ
C23 TFWVYKTFDFYNLWNTFTRLQ
C24 TFWVYKTFDFYNLWNTFTRLQ
*****:***********::**
-- Starting log on Wed Nov 02 20:14:32 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.57 sec, SCORE=999, Nseq=24, Len=521
C1 CTTNLFKDCSKSYIGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C2 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C3 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C4 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C5 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C6 CTTNLFKDCSRSYAGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C7 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C8 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C9 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C10 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C11 CTTNLFKDCSRSYEGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C12 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVSY
C13 CTTNLFKDCSRSYAGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C14 CTTNLFKDCSKSYDGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSSVTY
C15 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C16 CTTNLFKDCSRSYAGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C17 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C18 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C19 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C20 CTTNLFKDCSRSYEGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C21 CTTNLFKDCSKSYVGIPP--CAFLLAVDDKYKVSGNLAVCLNVADSAVTY
C22 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C23 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C24 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
**********:** * * .. :*********.*:**********:*:*
C1 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C2 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C3 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C4 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C5 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C6 SRLISLMGFKLDLTLDGYCKLFITRDEAIRRVRAWVGFDAEGAHATRDSI
C7 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C8 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C9 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C10 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C11 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C12 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C13 SRLISLMGFKLDLTLDGYCKLFITRDEAIRRVRAWVGFDAEGAHATRDSI
C14 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C15 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C16 SRLISLMGFKLDLTLDGYCKLFITRDEAIRRVRAWVGFDAEGAHATRDSI
C17 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C18 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C19 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C20 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C21 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C22 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C23 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C24 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
*****************************:*************** ****
C1 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C2 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C3 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C4 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C5 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVP
C6 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVP
C7 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVP
C8 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C9 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C10 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C11 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGDQFKHLVP
C12 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C13 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVP
C14 GTNFPLQLGFSTGIDFVVEATGMFAEREGYVFKKAAARAPPGEQFKHLVP
C15 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C16 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVP
C17 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C18 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C19 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C20 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGDQFKHLVP
C21 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C22 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C23 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C24 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
***************************:*******.******:*****:*
C1 LLSRGQKWDEVRIRIVPMVSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C2 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C3 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C4 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C5 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C6 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C7 LMSRGQKWEVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C8 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C9 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C10 LMARGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C11 LMSRGQKWDVVRTRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C12 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C13 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C14 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C15 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C16 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C17 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C18 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C19 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C20 LMSRGQKWDVVRTRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C21 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C22 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C23 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C24 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
*::*****: ** *** *:*******************************
C1 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIEQWGYTG
C2 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C3 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C4 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C5 GKEVMCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C6 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C7 GKEVMCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C8 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C9 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C10 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C11 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C12 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C13 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C14 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C15 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C16 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C17 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C18 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C19 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C20 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C21 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C22 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C23 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C24 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
*:**:****.*********************************:******
C1 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C2 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C3 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C4 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C5 SLTSNHDQICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C6 SLTSNHDLICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWSLEYPIISN
C7 SLTSNHDQICSMHKGAHVASSDAIMTRCLAVHDCFCKSVNWNVEYPIISN
C8 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C9 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C10 SLTSNHDQICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNVEYPIISN
C11 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKFVNWNLEYPIISN
C12 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C13 SLTSNHDLICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWSLEYPIISN
C14 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIILN
C15 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C16 SLTSNHDLICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWSLEYPIISN
C17 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C18 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C19 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C20 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKFVNWNLEYPIISN
C21 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C22 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C23 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C24 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
******* ***:************************* ***.:***** *
C1 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C2 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C3 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C4 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C5 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C6 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C7 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C8 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C9 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C10 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C11 EVSVNASCRSLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C12 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C13 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C14 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C15 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C16 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C17 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C18 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C19 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C20 EVSVNASCRSLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C21 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C22 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C23 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C24 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
*****:*** ****************************************
C1 SPVVKSVKQFVYKYEAHKDLFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C2 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C3 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C4 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C5 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C6 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C7 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C8 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C9 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C10 SPVVKSVKQFVYKYEAHKDLFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C11 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C12 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C13 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C14 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C15 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C16 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C17 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C18 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C19 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C20 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C21 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C22 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C23 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C24 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
******************* ******************************
C1 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C2 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C3 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C4 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C5 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C6 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C7 NKLNLPGCNGGSLYVNKHAFHTIPFTRAAFENLKPMPFFYYSDTPCVYME
C8 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C9 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C10 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C11 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C12 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C13 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C14 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C15 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C16 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C17 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C18 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C19 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C20 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C21 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C22 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C23 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C24 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
.********************* ***************************
C1 GMDSKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C2 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C3 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C4 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C5 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C6 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEDYREYLESYNTATTAGF
C7 GMESKQVDYVPLRSATCITRCNLGGAVCVKHAEEYREYLESYNTATTAGF
C8 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C9 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C10 GMESKQVDYVPLRSATCITRCNLGGAVCVKHAEEYREYLESYNTATTAGF
C11 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C12 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C13 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEDYREYLESYNTATTAGF
C14 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C15 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C16 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEDYREYLESYNTATTAGF
C17 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C18 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C19 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C20 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C21 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C22 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C23 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C24 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
**:*************************:****:****************
C1 TFWVYKTFDFYNLWNTFAKLQ
C2 TFWVYKTFDFYNLWNTFTRLQ
C3 TFWVYKTFDFYNLWNTFTRLQ
C4 TFWVYKTFDFYNLWNTFTRLQ
C5 TFWVYKTFDFYNLWNTFTRLQ
C6 TFWVYKTFDFYNLWNTFTRLQ
C7 TFWVYKTFDFYNLWNTFTRLQ
C8 TFWVYKTFDFYNLWNTFTRLQ
C9 TFWVYKTFDFYNLWNTFTRLQ
C10 TFWVYRTFDFYNLWNTFTRLQ
C11 TFWVYKTFDFYNLWNTFTRLQ
C12 TFWVYKTFDFYNLWNTFTRLQ
C13 TFWVYKTFDFYNLWNTFTRLQ
C14 TFWVYKTFDFYNLWNTFTRLQ
C15 TFWVYKTFDFYNLWNTFTRLQ
C16 TFWVYKTFDFYNLWNTFTRLQ
C17 TFWVYKTFDFYNLWNTFTRLQ
C18 TFWVYKTFDFYNLWNTFTRLQ
C19 TFWVYKTFDFYNLWNTFTRLQ
C20 TFWVYKTFDFYNLWNTFTRLQ
C21 TFWVYKTFDFYNLWNTFTRLQ
C22 TFWVYKTFDFYNLWNTFTRLQ
C23 TFWVYKTFDFYNLWNTFTRLQ
C24 TFWVYKTFDFYNLWNTFTRLQ
*****:***********::**
-- Starting log on Wed Nov 02 22:27:26 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus.result/gapped_alignment/codeml,A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 24 taxa and 1563 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C1
Taxon 2 -> C10
Taxon 3 -> C11
Taxon 4 -> C12
Taxon 5 -> C13
Taxon 6 -> C14
Taxon 7 -> C15
Taxon 8 -> C16
Taxon 9 -> C17
Taxon 10 -> C18
Taxon 11 -> C19
Taxon 12 -> C2
Taxon 13 -> C20
Taxon 14 -> C21
Taxon 15 -> C22
Taxon 16 -> C23
Taxon 17 -> C24
Taxon 18 -> C3
Taxon 19 -> C4
Taxon 20 -> C5
Taxon 21 -> C6
Taxon 22 -> C7
Taxon 23 -> C8
Taxon 24 -> C9
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1667428048
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 766158268
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 9341765799
Seed = 1221499397
Swapseed = 1667428048
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 36 unique site patterns
Division 2 has 29 unique site patterns
Division 3 has 132 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -7149.761203 -- 70.542948
Chain 2 -- -7411.682704 -- 70.542948
Chain 3 -- -7169.054647 -- 70.542948
Chain 4 -- -6979.635347 -- 70.542948
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -7339.214763 -- 70.542948
Chain 2 -- -7265.094203 -- 70.542948
Chain 3 -- -7523.564252 -- 70.542948
Chain 4 -- -7071.896370 -- 70.542948
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-7149.761] (-7411.683) (-7169.055) (-6979.635) * [-7339.215] (-7265.094) (-7523.564) (-7071.896)
1000 -- (-4321.333) (-4329.055) (-4335.153) [-4211.393] * (-4301.804) (-4310.565) (-4346.565) [-4294.227] -- 0:16:39
2000 -- (-4177.976) (-4179.464) (-4182.165) [-4109.763] * (-4212.642) (-4176.756) (-4182.033) [-4162.313] -- 0:16:38
3000 -- (-4141.898) (-4111.825) (-4144.222) [-4101.397] * (-4130.217) [-4108.516] (-4135.985) (-4116.208) -- 0:16:37
4000 -- (-4120.070) (-4100.923) (-4100.994) [-4098.445] * (-4107.240) (-4099.457) (-4129.180) [-4080.053] -- 0:16:36
5000 -- (-4093.644) (-4097.703) [-4078.543] (-4104.175) * [-4072.742] (-4091.854) (-4119.986) (-4083.952) -- 0:16:35
Average standard deviation of split frequencies: 0.090121
6000 -- (-4092.674) (-4081.277) [-4090.109] (-4083.915) * [-4078.264] (-4080.462) (-4130.376) (-4080.187) -- 0:16:34
7000 -- (-4098.889) (-4079.215) [-4086.476] (-4082.056) * (-4091.868) (-4110.935) (-4094.177) [-4070.890] -- 0:16:33
8000 -- (-4099.442) (-4083.128) (-4091.513) [-4071.426] * (-4079.493) (-4094.256) (-4089.609) [-4072.128] -- 0:16:32
9000 -- (-4100.283) (-4084.290) [-4077.205] (-4077.848) * (-4083.761) (-4080.640) (-4087.051) [-4081.832] -- 0:16:31
10000 -- [-4070.782] (-4084.091) (-4080.256) (-4081.256) * (-4085.219) (-4098.300) [-4077.942] (-4088.205) -- 0:16:30
Average standard deviation of split frequencies: 0.070031
11000 -- (-4091.668) [-4079.695] (-4090.069) (-4077.458) * (-4081.715) (-4082.546) [-4072.507] (-4087.517) -- 0:16:29
12000 -- (-4081.238) (-4089.766) [-4089.469] (-4091.573) * (-4070.923) (-4076.256) (-4081.701) [-4080.073] -- 0:16:28
13000 -- (-4078.944) (-4068.383) (-4095.789) [-4097.606] * (-4092.144) (-4091.275) (-4094.206) [-4072.708] -- 0:16:27
14000 -- [-4067.491] (-4079.370) (-4088.789) (-4104.135) * (-4084.043) (-4093.744) (-4077.076) [-4078.358] -- 0:16:26
15000 -- (-4085.436) [-4075.887] (-4075.739) (-4088.705) * [-4088.750] (-4086.265) (-4080.705) (-4083.268) -- 0:16:25
Average standard deviation of split frequencies: 0.049551
16000 -- (-4091.345) (-4081.494) (-4071.507) [-4078.279] * (-4091.673) (-4095.406) [-4074.769] (-4088.740) -- 0:16:24
17000 -- [-4073.669] (-4082.478) (-4084.925) (-4077.012) * [-4089.570] (-4076.307) (-4078.732) (-4085.631) -- 0:16:23
18000 -- [-4066.829] (-4082.955) (-4081.472) (-4094.976) * (-4089.671) (-4093.822) (-4080.465) [-4080.384] -- 0:16:22
19000 -- [-4073.080] (-4079.039) (-4091.812) (-4101.488) * [-4077.689] (-4087.663) (-4082.107) (-4076.143) -- 0:16:21
20000 -- (-4099.455) [-4081.691] (-4077.754) (-4090.758) * (-4086.225) (-4095.472) [-4063.243] (-4081.727) -- 0:16:20
Average standard deviation of split frequencies: 0.048931
21000 -- (-4077.196) [-4072.308] (-4077.481) (-4081.786) * (-4091.845) (-4082.178) (-4079.359) [-4064.515] -- 0:16:19
22000 -- (-4073.817) (-4098.562) (-4075.848) [-4075.947] * [-4080.272] (-4091.848) (-4091.674) (-4090.785) -- 0:16:18
23000 -- [-4069.460] (-4083.688) (-4085.443) (-4082.841) * [-4071.711] (-4076.851) (-4080.891) (-4088.353) -- 0:16:17
24000 -- [-4077.698] (-4079.238) (-4095.615) (-4092.095) * (-4081.936) (-4080.114) [-4095.720] (-4082.892) -- 0:16:16
25000 -- (-4081.653) [-4066.421] (-4078.932) (-4084.675) * (-4077.513) [-4076.758] (-4083.860) (-4082.588) -- 0:16:15
Average standard deviation of split frequencies: 0.040092
26000 -- (-4084.325) [-4066.937] (-4089.813) (-4085.301) * (-4087.984) (-4080.884) [-4079.854] (-4082.257) -- 0:16:14
27000 -- [-4073.495] (-4086.405) (-4103.313) (-4085.463) * (-4093.024) [-4082.023] (-4099.998) (-4076.621) -- 0:16:13
28000 -- [-4079.058] (-4089.693) (-4096.522) (-4087.575) * (-4086.228) [-4080.078] (-4095.510) (-4086.065) -- 0:16:12
29000 -- [-4076.591] (-4083.741) (-4093.549) (-4085.516) * (-4084.051) [-4075.381] (-4088.795) (-4082.732) -- 0:16:11
30000 -- [-4081.065] (-4087.965) (-4075.286) (-4081.214) * (-4089.075) (-4094.572) (-4075.143) [-4080.292] -- 0:16:10
Average standard deviation of split frequencies: 0.039494
31000 -- (-4100.263) (-4082.395) (-4067.006) [-4071.398] * (-4076.763) [-4075.378] (-4092.804) (-4077.052) -- 0:16:09
32000 -- (-4074.732) [-4091.030] (-4097.800) (-4087.196) * (-4079.163) [-4071.241] (-4095.768) (-4091.027) -- 0:16:08
33000 -- (-4084.586) [-4081.833] (-4089.003) (-4087.308) * (-4081.393) (-4072.155) (-4093.316) [-4079.021] -- 0:16:07
34000 -- (-4080.553) [-4083.427] (-4077.906) (-4096.467) * (-4075.299) [-4087.071] (-4086.776) (-4089.403) -- 0:16:06
35000 -- (-4085.046) [-4075.156] (-4099.663) (-4095.220) * [-4069.370] (-4090.298) (-4093.580) (-4073.056) -- 0:16:05
Average standard deviation of split frequencies: 0.041903
36000 -- (-4079.056) [-4071.790] (-4080.343) (-4084.036) * (-4085.401) (-4073.367) (-4090.484) [-4079.161] -- 0:16:04
37000 -- (-4093.499) [-4079.102] (-4080.557) (-4073.442) * (-4081.064) (-4081.197) [-4081.401] (-4076.758) -- 0:16:03
38000 -- (-4072.753) (-4095.855) [-4083.429] (-4093.378) * (-4079.481) (-4104.878) [-4074.422] (-4087.241) -- 0:16:02
39000 -- (-4081.151) [-4090.548] (-4087.075) (-4094.723) * (-4098.229) (-4083.739) (-4070.044) [-4081.873] -- 0:16:01
40000 -- (-4081.014) (-4074.190) [-4079.115] (-4091.159) * (-4084.328) (-4073.595) (-4078.266) [-4074.707] -- 0:16:00
Average standard deviation of split frequencies: 0.043376
41000 -- [-4082.057] (-4077.584) (-4085.797) (-4087.770) * (-4090.462) (-4082.717) [-4082.527] (-4080.539) -- 0:15:59
42000 -- (-4100.244) [-4091.032] (-4076.726) (-4083.957) * (-4090.598) (-4080.951) (-4089.632) [-4071.168] -- 0:15:58
43000 -- (-4078.040) (-4092.841) (-4094.203) [-4061.066] * (-4088.680) [-4089.529] (-4072.405) (-4083.702) -- 0:15:57
44000 -- (-4089.440) [-4074.762] (-4084.958) (-4071.552) * (-4084.888) (-4096.269) (-4091.517) [-4075.898] -- 0:15:56
45000 -- (-4087.665) [-4070.577] (-4077.775) (-4082.532) * (-4094.206) (-4081.665) (-4078.318) [-4076.044] -- 0:15:55
Average standard deviation of split frequencies: 0.033191
46000 -- (-4091.590) (-4079.097) [-4087.325] (-4081.601) * (-4068.261) (-4096.432) (-4081.938) [-4076.104] -- 0:15:54
47000 -- (-4087.439) (-4082.911) (-4081.705) [-4081.725] * [-4074.479] (-4086.766) (-4095.656) (-4073.400) -- 0:15:53
48000 -- (-4094.494) (-4092.448) [-4069.094] (-4090.301) * [-4080.133] (-4084.889) (-4072.686) (-4097.530) -- 0:16:11
49000 -- (-4071.313) (-4087.267) [-4076.481] (-4097.204) * (-4081.602) (-4098.988) (-4079.269) [-4077.374] -- 0:16:10
50000 -- (-4083.447) (-4099.413) (-4083.919) [-4072.818] * [-4077.143] (-4089.580) (-4089.568) (-4080.018) -- 0:16:09
Average standard deviation of split frequencies: 0.031523
51000 -- (-4089.515) (-4085.602) (-4095.227) [-4081.115] * (-4078.117) (-4085.758) (-4093.171) [-4092.712] -- 0:16:07
52000 -- [-4070.872] (-4086.197) (-4085.522) (-4077.775) * (-4066.504) (-4074.051) (-4099.822) [-4066.987] -- 0:16:06
53000 -- (-4079.939) [-4072.740] (-4103.359) (-4079.354) * (-4084.703) [-4075.744] (-4088.774) (-4092.481) -- 0:16:04
54000 -- [-4076.636] (-4097.091) (-4069.561) (-4085.515) * (-4082.766) (-4079.153) [-4079.558] (-4072.001) -- 0:16:03
55000 -- (-4068.765) (-4090.853) [-4080.341] (-4088.466) * (-4096.071) (-4081.677) (-4085.026) [-4084.599] -- 0:16:02
Average standard deviation of split frequencies: 0.034486
56000 -- [-4078.769] (-4090.321) (-4083.768) (-4078.523) * [-4073.869] (-4072.687) (-4082.758) (-4085.012) -- 0:16:00
57000 -- (-4093.506) (-4084.380) [-4071.166] (-4080.071) * (-4093.573) [-4076.111] (-4092.545) (-4087.967) -- 0:15:59
58000 -- [-4086.794] (-4071.345) (-4084.086) (-4073.183) * (-4094.195) (-4081.278) (-4078.105) [-4072.344] -- 0:15:58
59000 -- (-4088.772) [-4078.103] (-4084.561) (-4089.309) * [-4081.922] (-4076.879) (-4089.176) (-4087.181) -- 0:15:56
60000 -- (-4093.775) [-4077.951] (-4075.763) (-4081.228) * (-4083.844) (-4077.358) (-4081.403) [-4088.227] -- 0:15:55
Average standard deviation of split frequencies: 0.032210
61000 -- (-4085.326) [-4091.081] (-4083.381) (-4082.141) * (-4082.386) (-4081.899) (-4075.124) [-4080.924] -- 0:15:54
62000 -- [-4075.417] (-4093.751) (-4081.937) (-4075.319) * [-4081.744] (-4081.698) (-4090.614) (-4087.499) -- 0:15:53
63000 -- (-4097.372) (-4090.890) [-4084.551] (-4079.576) * (-4083.477) (-4102.887) (-4083.122) [-4077.604] -- 0:15:51
64000 -- (-4082.158) (-4092.764) [-4068.671] (-4083.995) * (-4107.875) (-4084.884) (-4076.087) [-4077.140] -- 0:15:50
65000 -- (-4088.829) (-4108.215) (-4071.188) [-4073.894] * (-4070.231) [-4073.060] (-4090.646) (-4087.476) -- 0:15:49
Average standard deviation of split frequencies: 0.030193
66000 -- (-4081.398) (-4084.644) [-4070.689] (-4087.518) * (-4087.976) (-4085.816) (-4092.225) [-4073.778] -- 0:15:48
67000 -- [-4088.427] (-4090.746) (-4071.562) (-4092.319) * [-4092.961] (-4069.230) (-4090.855) (-4082.271) -- 0:15:46
68000 -- (-4075.659) (-4090.846) [-4084.350] (-4091.597) * (-4074.092) (-4098.185) [-4082.138] (-4096.925) -- 0:15:45
69000 -- [-4085.317] (-4098.480) (-4082.616) (-4090.856) * (-4096.977) (-4092.526) (-4084.476) [-4075.337] -- 0:15:44
70000 -- (-4075.329) (-4077.330) (-4093.605) [-4079.678] * (-4089.899) (-4082.341) [-4072.888] (-4095.550) -- 0:15:43
Average standard deviation of split frequencies: 0.030583
71000 -- (-4079.589) (-4101.436) (-4074.100) [-4073.598] * (-4091.135) (-4086.684) (-4083.627) [-4073.385] -- 0:15:42
72000 -- (-4084.795) (-4087.428) [-4068.793] (-4085.080) * [-4076.662] (-4089.348) (-4087.953) (-4076.246) -- 0:15:40
73000 -- (-4091.483) [-4067.326] (-4080.840) (-4082.984) * (-4086.270) (-4075.720) (-4099.677) [-4066.262] -- 0:15:39
74000 -- (-4076.015) (-4071.178) (-4082.644) [-4075.629] * [-4069.052] (-4085.025) (-4094.818) (-4077.870) -- 0:15:38
75000 -- (-4080.244) (-4079.720) (-4096.765) [-4068.511] * [-4082.828] (-4093.616) (-4081.913) (-4072.979) -- 0:15:49
Average standard deviation of split frequencies: 0.029340
76000 -- (-4079.600) [-4077.304] (-4076.231) (-4070.161) * (-4085.861) (-4077.532) [-4073.920] (-4085.774) -- 0:15:48
77000 -- (-4085.032) (-4084.058) [-4076.444] (-4073.414) * (-4091.801) (-4087.785) [-4063.211] (-4072.345) -- 0:15:46
78000 -- (-4086.261) (-4087.582) (-4078.840) [-4062.907] * [-4089.109] (-4070.589) (-4079.725) (-4083.587) -- 0:15:45
79000 -- [-4070.804] (-4102.407) (-4085.801) (-4090.086) * (-4092.810) (-4090.286) [-4077.680] (-4088.944) -- 0:15:44
80000 -- [-4081.205] (-4093.489) (-4083.462) (-4077.838) * (-4073.192) [-4072.158] (-4089.672) (-4093.728) -- 0:15:43
Average standard deviation of split frequencies: 0.029402
81000 -- (-4074.051) [-4078.867] (-4095.666) (-4081.413) * (-4074.074) (-4077.382) (-4093.248) [-4092.114] -- 0:15:41
82000 -- [-4079.431] (-4090.548) (-4086.034) (-4085.977) * (-4091.786) (-4089.721) (-4082.508) [-4089.734] -- 0:15:40
83000 -- (-4074.385) (-4094.655) (-4078.965) [-4079.244] * [-4075.714] (-4085.958) (-4074.327) (-4078.884) -- 0:15:28
84000 -- (-4070.692) (-4083.336) (-4084.810) [-4063.327] * (-4077.747) (-4090.664) [-4064.979] (-4087.486) -- 0:15:26
85000 -- (-4075.409) (-4093.288) (-4075.210) [-4070.020] * [-4070.814] (-4077.167) (-4083.063) (-4092.869) -- 0:15:25
Average standard deviation of split frequencies: 0.027239
86000 -- (-4095.276) [-4073.181] (-4075.196) (-4103.643) * (-4085.243) (-4064.287) (-4098.372) [-4084.050] -- 0:15:24
87000 -- (-4091.529) [-4069.603] (-4084.747) (-4076.789) * (-4095.013) (-4094.135) [-4093.719] (-4078.057) -- 0:15:23
88000 -- (-4078.974) (-4081.133) (-4094.736) [-4081.615] * (-4079.501) (-4082.411) [-4080.555] (-4086.809) -- 0:15:22
89000 -- (-4081.792) (-4072.557) (-4093.142) [-4074.505] * [-4093.230] (-4086.717) (-4076.309) (-4103.163) -- 0:15:21
90000 -- (-4077.904) (-4085.323) (-4076.284) [-4070.631] * (-4087.103) (-4080.051) (-4074.524) [-4078.572] -- 0:15:20
Average standard deviation of split frequencies: 0.025913
91000 -- (-4089.309) [-4082.270] (-4096.318) (-4089.940) * (-4079.930) (-4093.670) [-4066.074] (-4081.600) -- 0:15:18
92000 -- (-4102.099) (-4097.147) (-4110.856) [-4075.494] * (-4094.094) (-4083.269) [-4078.286] (-4080.717) -- 0:15:17
93000 -- [-4072.186] (-4085.110) (-4083.674) (-4082.482) * [-4073.565] (-4084.294) (-4078.204) (-4075.031) -- 0:15:16
94000 -- (-4091.338) (-4088.488) (-4073.468) [-4068.764] * (-4081.462) (-4088.795) [-4073.577] (-4084.534) -- 0:15:15
95000 -- (-4095.881) (-4088.105) (-4069.891) [-4075.088] * (-4095.668) (-4081.189) (-4072.985) [-4075.224] -- 0:15:14
Average standard deviation of split frequencies: 0.025098
96000 -- (-4094.528) (-4081.628) (-4077.834) [-4074.826] * (-4074.763) (-4099.490) [-4096.287] (-4083.879) -- 0:15:13
97000 -- (-4099.488) (-4111.595) (-4082.313) [-4081.880] * (-4089.696) (-4101.738) (-4084.963) [-4082.916] -- 0:15:12
98000 -- (-4091.757) (-4092.346) (-4094.990) [-4083.765] * (-4082.903) (-4079.260) [-4076.739] (-4075.936) -- 0:15:11
99000 -- [-4067.626] (-4097.750) (-4084.915) (-4087.947) * (-4076.690) [-4086.406] (-4084.148) (-4080.103) -- 0:15:10
100000 -- [-4097.375] (-4084.123) (-4115.966) (-4074.980) * (-4077.551) (-4077.220) [-4073.698] (-4087.099) -- 0:15:09
Average standard deviation of split frequencies: 0.023102
101000 -- (-4084.883) (-4100.550) (-4089.390) [-4075.401] * [-4076.321] (-4069.439) (-4087.926) (-4082.193) -- 0:15:07
102000 -- [-4075.963] (-4084.920) (-4097.225) (-4076.546) * (-4077.331) [-4074.138] (-4087.543) (-4074.973) -- 0:15:06
103000 -- [-4064.772] (-4099.521) (-4076.767) (-4078.703) * (-4081.302) (-4076.787) (-4078.941) [-4075.802] -- 0:15:05
104000 -- (-4086.916) (-4075.496) [-4086.940] (-4073.163) * (-4089.072) (-4084.953) (-4072.077) [-4073.373] -- 0:15:04
105000 -- (-4078.097) (-4077.103) (-4077.182) [-4070.937] * (-4085.112) [-4086.139] (-4085.994) (-4071.188) -- 0:15:03
Average standard deviation of split frequencies: 0.021375
106000 -- [-4078.468] (-4101.913) (-4086.787) (-4074.723) * (-4083.472) (-4095.003) [-4081.273] (-4092.265) -- 0:15:02
107000 -- (-4082.903) (-4077.875) [-4086.632] (-4083.234) * [-4088.615] (-4104.326) (-4092.865) (-4099.821) -- 0:15:01
108000 -- (-4095.949) (-4100.796) [-4072.000] (-4094.869) * (-4091.644) (-4066.513) (-4080.332) [-4070.045] -- 0:15:00
109000 -- (-4082.863) [-4086.669] (-4085.785) (-4091.016) * (-4090.197) (-4084.685) [-4078.339] (-4072.192) -- 0:14:59
110000 -- (-4087.871) [-4078.550] (-4088.645) (-4093.677) * (-4090.520) (-4081.055) (-4075.126) [-4079.265] -- 0:14:58
Average standard deviation of split frequencies: 0.020966
111000 -- (-4082.184) (-4071.782) [-4079.720] (-4091.508) * [-4084.689] (-4087.603) (-4097.161) (-4088.488) -- 0:14:57
112000 -- (-4092.177) (-4071.925) [-4069.325] (-4088.209) * (-4077.080) [-4081.269] (-4093.191) (-4078.888) -- 0:14:55
113000 -- [-4083.599] (-4074.883) (-4096.996) (-4086.349) * (-4094.924) [-4073.301] (-4079.752) (-4085.172) -- 0:14:54
114000 -- (-4081.612) [-4070.319] (-4089.643) (-4089.476) * (-4099.541) (-4089.144) [-4065.799] (-4083.579) -- 0:14:53
115000 -- (-4095.874) [-4067.189] (-4105.669) (-4075.394) * [-4087.533] (-4072.635) (-4086.348) (-4093.872) -- 0:14:52
Average standard deviation of split frequencies: 0.019684
116000 -- (-4078.326) (-4086.830) (-4087.504) [-4089.944] * [-4075.716] (-4079.156) (-4087.338) (-4098.525) -- 0:14:51
117000 -- (-4090.423) [-4090.856] (-4076.152) (-4087.275) * [-4068.974] (-4083.322) (-4084.423) (-4081.363) -- 0:14:50
118000 -- (-4086.830) (-4089.217) (-4071.304) [-4094.303] * (-4071.160) (-4086.935) [-4077.078] (-4092.365) -- 0:14:49
119000 -- (-4087.147) [-4081.150] (-4080.723) (-4085.641) * (-4094.313) [-4074.680] (-4080.808) (-4091.416) -- 0:14:48
120000 -- [-4078.367] (-4082.928) (-4077.766) (-4088.866) * (-4071.297) [-4084.210] (-4080.844) (-4087.159) -- 0:14:47
Average standard deviation of split frequencies: 0.019029
121000 -- [-4076.366] (-4077.759) (-4084.339) (-4078.819) * (-4091.766) (-4082.084) [-4077.782] (-4081.722) -- 0:14:46
122000 -- (-4084.184) (-4094.868) [-4075.610] (-4080.597) * [-4086.255] (-4085.939) (-4089.891) (-4081.668) -- 0:14:45
123000 -- (-4077.076) (-4089.048) (-4089.977) [-4069.870] * (-4080.485) (-4084.388) [-4075.856] (-4084.238) -- 0:14:44
124000 -- (-4081.307) [-4067.531] (-4085.163) (-4078.799) * (-4079.804) [-4068.412] (-4102.748) (-4086.500) -- 0:14:43
125000 -- [-4077.208] (-4076.420) (-4086.013) (-4081.194) * (-4081.285) [-4067.529] (-4085.044) (-4079.558) -- 0:14:42
Average standard deviation of split frequencies: 0.017420
126000 -- (-4088.234) [-4081.841] (-4092.296) (-4078.320) * [-4072.688] (-4085.069) (-4071.786) (-4094.035) -- 0:14:40
127000 -- (-4073.698) (-4074.644) (-4084.885) [-4077.705] * (-4069.897) (-4094.638) (-4088.610) [-4085.621] -- 0:14:39
128000 -- [-4072.499] (-4104.679) (-4092.347) (-4072.837) * (-4088.904) [-4077.154] (-4074.525) (-4083.562) -- 0:14:38
129000 -- (-4071.815) (-4086.769) [-4079.973] (-4094.715) * (-4086.139) (-4077.942) [-4067.623] (-4090.618) -- 0:14:37
130000 -- (-4080.284) (-4083.247) [-4076.978] (-4084.330) * (-4083.385) (-4081.294) [-4083.789] (-4103.017) -- 0:14:36
Average standard deviation of split frequencies: 0.017340
131000 -- (-4097.435) (-4069.202) (-4090.217) [-4083.558] * (-4066.292) (-4079.687) (-4080.830) [-4070.585] -- 0:14:35
132000 -- (-4087.036) [-4076.119] (-4084.465) (-4090.935) * [-4077.312] (-4082.229) (-4091.299) (-4068.640) -- 0:14:34
133000 -- [-4083.958] (-4076.273) (-4099.037) (-4079.357) * [-4082.253] (-4080.937) (-4071.815) (-4080.476) -- 0:14:33
134000 -- (-4086.900) (-4093.275) (-4075.905) [-4090.910] * (-4099.131) [-4100.890] (-4083.619) (-4080.812) -- 0:14:32
135000 -- (-4079.293) (-4092.395) [-4075.820] (-4074.086) * (-4075.496) (-4101.047) (-4086.027) [-4081.891] -- 0:14:31
Average standard deviation of split frequencies: 0.017216
136000 -- [-4082.499] (-4093.049) (-4082.299) (-4080.716) * [-4081.662] (-4103.603) (-4090.713) (-4075.529) -- 0:14:30
137000 -- (-4097.182) (-4082.783) (-4066.262) [-4069.508] * (-4073.846) (-4100.828) [-4074.754] (-4081.378) -- 0:14:29
138000 -- (-4083.684) (-4093.056) (-4066.548) [-4081.117] * (-4086.997) (-4085.423) [-4066.433] (-4076.388) -- 0:14:34
139000 -- (-4085.995) (-4074.128) (-4079.247) [-4073.234] * (-4097.428) (-4077.486) (-4076.609) [-4075.881] -- 0:14:33
140000 -- (-4091.399) (-4084.565) (-4080.297) [-4072.685] * (-4094.577) (-4090.043) (-4073.527) [-4077.362] -- 0:14:32
Average standard deviation of split frequencies: 0.016536
141000 -- (-4074.330) (-4081.526) (-4085.200) [-4080.467] * (-4099.154) (-4105.574) (-4077.255) [-4072.008] -- 0:14:31
142000 -- (-4087.101) [-4069.593] (-4074.196) (-4085.799) * (-4090.142) (-4080.171) [-4078.722] (-4087.643) -- 0:14:30
143000 -- (-4075.030) [-4082.060] (-4098.015) (-4072.830) * [-4072.275] (-4081.532) (-4081.222) (-4083.784) -- 0:14:28
144000 -- [-4077.058] (-4078.870) (-4100.769) (-4088.860) * [-4072.568] (-4080.557) (-4090.214) (-4095.656) -- 0:14:27
145000 -- [-4076.630] (-4073.928) (-4084.627) (-4082.302) * [-4069.758] (-4078.930) (-4090.751) (-4087.303) -- 0:14:26
Average standard deviation of split frequencies: 0.016093
146000 -- (-4091.749) [-4075.869] (-4076.156) (-4083.640) * (-4075.548) (-4081.988) (-4079.329) [-4077.659] -- 0:14:25
147000 -- (-4089.889) (-4073.507) (-4084.926) [-4065.475] * (-4075.064) (-4103.631) (-4077.689) [-4093.051] -- 0:14:24
148000 -- (-4082.605) [-4078.823] (-4089.192) (-4086.073) * (-4083.369) (-4089.287) [-4079.098] (-4097.729) -- 0:14:23
149000 -- [-4090.273] (-4084.045) (-4069.042) (-4090.557) * [-4072.063] (-4101.613) (-4079.542) (-4083.432) -- 0:14:22
150000 -- (-4084.809) (-4098.505) [-4078.520] (-4083.412) * [-4077.270] (-4081.471) (-4093.845) (-4091.701) -- 0:14:21
Average standard deviation of split frequencies: 0.016439
151000 -- (-4083.165) [-4081.981] (-4093.174) (-4085.690) * (-4081.566) (-4076.360) [-4074.001] (-4092.395) -- 0:14:20
152000 -- [-4068.676] (-4091.976) (-4066.444) (-4088.751) * (-4077.432) (-4085.423) [-4070.915] (-4074.231) -- 0:14:19
153000 -- (-4082.527) (-4080.634) [-4072.656] (-4087.700) * [-4078.924] (-4085.350) (-4085.582) (-4082.849) -- 0:14:18
154000 -- (-4088.151) (-4086.153) [-4065.981] (-4109.612) * (-4088.063) (-4086.961) [-4078.613] (-4085.686) -- 0:14:16
155000 -- (-4090.340) [-4085.207] (-4076.332) (-4076.955) * (-4080.379) (-4079.540) (-4094.040) [-4080.268] -- 0:14:15
Average standard deviation of split frequencies: 0.016884
156000 -- (-4094.365) (-4084.587) (-4093.634) [-4078.477] * (-4080.535) (-4090.511) [-4084.919] (-4077.384) -- 0:14:14
157000 -- (-4088.346) (-4075.991) (-4085.748) [-4071.716] * [-4076.050] (-4090.677) (-4096.103) (-4085.554) -- 0:14:13
158000 -- (-4082.441) (-4086.263) (-4089.503) [-4075.889] * [-4086.194] (-4081.864) (-4087.979) (-4094.367) -- 0:14:12
159000 -- (-4085.073) (-4077.529) (-4092.879) [-4072.051] * [-4073.612] (-4098.564) (-4086.111) (-4105.198) -- 0:14:11
160000 -- (-4074.987) (-4085.120) (-4096.770) [-4071.519] * (-4067.377) [-4081.183] (-4085.555) (-4081.187) -- 0:14:10
Average standard deviation of split frequencies: 0.016690
161000 -- (-4086.932) [-4086.063] (-4085.295) (-4104.638) * (-4076.910) (-4085.419) (-4078.965) [-4090.798] -- 0:14:09
162000 -- [-4063.729] (-4082.338) (-4090.490) (-4087.318) * (-4074.878) (-4089.583) (-4089.842) [-4084.791] -- 0:14:08
163000 -- (-4077.257) [-4076.590] (-4090.911) (-4086.358) * (-4087.877) (-4089.218) (-4091.353) [-4071.354] -- 0:14:07
164000 -- [-4084.668] (-4087.731) (-4087.793) (-4086.086) * (-4105.271) (-4082.086) (-4089.554) [-4077.757] -- 0:14:06
165000 -- (-4095.033) [-4079.032] (-4086.456) (-4086.575) * (-4083.451) [-4081.461] (-4084.402) (-4082.549) -- 0:14:05
Average standard deviation of split frequencies: 0.017399
166000 -- (-4081.398) (-4090.247) (-4114.950) [-4069.832] * [-4085.326] (-4089.494) (-4073.600) (-4082.819) -- 0:14:04
167000 -- (-4104.090) [-4078.849] (-4085.700) (-4075.195) * (-4089.302) (-4098.772) (-4069.864) [-4068.757] -- 0:14:02
168000 -- (-4083.580) (-4079.452) [-4072.831] (-4084.489) * [-4072.903] (-4075.511) (-4085.652) (-4088.994) -- 0:14:01
169000 -- (-4099.735) [-4079.573] (-4085.245) (-4096.190) * [-4080.781] (-4070.195) (-4077.023) (-4097.671) -- 0:14:00
170000 -- (-4079.152) [-4073.090] (-4078.384) (-4099.359) * (-4084.434) (-4089.162) (-4074.666) [-4088.077] -- 0:13:59
Average standard deviation of split frequencies: 0.016158
171000 -- (-4087.105) (-4080.659) [-4080.196] (-4092.102) * (-4082.431) (-4086.517) (-4092.717) [-4072.825] -- 0:13:58
172000 -- (-4093.315) (-4097.154) [-4078.666] (-4096.750) * [-4071.530] (-4080.054) (-4079.904) (-4084.242) -- 0:13:57
173000 -- (-4074.927) (-4070.991) (-4095.799) [-4078.179] * [-4070.030] (-4085.590) (-4095.244) (-4089.307) -- 0:13:56
174000 -- [-4068.515] (-4093.486) (-4084.820) (-4093.398) * (-4080.121) (-4086.069) (-4072.637) [-4079.008] -- 0:13:55
175000 -- (-4077.719) (-4108.745) [-4078.782] (-4074.660) * [-4070.671] (-4077.590) (-4095.739) (-4074.334) -- 0:13:54
Average standard deviation of split frequencies: 0.016963
176000 -- [-4078.665] (-4089.586) (-4081.113) (-4096.506) * (-4078.322) (-4106.605) (-4071.466) [-4079.794] -- 0:13:53
177000 -- (-4071.186) (-4084.420) (-4096.324) [-4079.455] * (-4072.661) [-4071.794] (-4088.641) (-4102.033) -- 0:13:52
178000 -- (-4102.455) (-4085.679) (-4085.931) [-4075.490] * [-4069.875] (-4075.867) (-4081.280) (-4093.336) -- 0:13:51
179000 -- (-4084.435) (-4078.264) (-4074.950) [-4076.997] * [-4088.215] (-4084.287) (-4082.535) (-4094.716) -- 0:13:50
180000 -- (-4080.020) (-4096.243) (-4068.238) [-4072.052] * (-4086.514) (-4083.114) (-4078.603) [-4075.367] -- 0:13:49
Average standard deviation of split frequencies: 0.016873
181000 -- (-4090.968) (-4086.100) (-4080.870) [-4081.950] * (-4087.882) (-4094.427) (-4086.911) [-4074.043] -- 0:13:48
182000 -- (-4083.983) (-4089.513) (-4082.027) [-4078.295] * (-4082.127) (-4099.980) (-4087.615) [-4068.995] -- 0:13:46
183000 -- (-4103.329) (-4075.595) [-4078.982] (-4080.689) * (-4092.118) (-4103.506) [-4082.457] (-4090.406) -- 0:13:45
184000 -- [-4085.203] (-4080.500) (-4071.312) (-4080.283) * (-4083.119) (-4084.957) (-4098.380) [-4077.451] -- 0:13:44
185000 -- (-4076.751) (-4103.856) [-4083.929] (-4095.979) * (-4072.411) (-4094.156) (-4076.018) [-4074.385] -- 0:13:43
Average standard deviation of split frequencies: 0.017326
186000 -- (-4063.353) (-4095.325) (-4093.895) [-4076.262] * (-4081.504) (-4081.587) [-4076.199] (-4088.087) -- 0:13:42
187000 -- (-4085.313) (-4089.391) [-4078.793] (-4082.191) * [-4079.378] (-4084.453) (-4093.240) (-4078.859) -- 0:13:41
188000 -- (-4081.328) (-4084.015) [-4069.676] (-4108.728) * [-4084.589] (-4085.237) (-4076.831) (-4088.904) -- 0:13:40
189000 -- (-4087.322) (-4094.548) [-4071.170] (-4076.816) * [-4085.030] (-4071.006) (-4095.105) (-4089.179) -- 0:13:39
190000 -- (-4077.439) (-4092.009) [-4081.547] (-4083.927) * (-4088.407) (-4085.408) [-4077.727] (-4075.463) -- 0:13:38
Average standard deviation of split frequencies: 0.017955
191000 -- (-4086.764) (-4092.075) [-4070.629] (-4085.711) * (-4088.639) [-4075.889] (-4074.077) (-4086.040) -- 0:13:37
192000 -- (-4087.680) [-4080.139] (-4088.176) (-4091.262) * [-4072.626] (-4095.269) (-4095.107) (-4078.147) -- 0:13:36
193000 -- (-4073.925) (-4074.412) [-4069.312] (-4083.827) * (-4084.968) (-4084.542) [-4071.944] (-4083.792) -- 0:13:35
194000 -- (-4074.420) [-4077.914] (-4073.893) (-4076.498) * (-4075.081) (-4078.123) [-4068.871] (-4087.518) -- 0:13:34
195000 -- (-4098.692) (-4087.476) [-4067.301] (-4085.060) * (-4094.120) (-4094.957) (-4081.889) [-4081.534] -- 0:13:33
Average standard deviation of split frequencies: 0.017883
196000 -- (-4082.007) [-4072.271] (-4066.786) (-4108.748) * (-4082.400) (-4087.847) [-4094.217] (-4102.263) -- 0:13:32
197000 -- [-4073.986] (-4089.717) (-4069.252) (-4097.045) * (-4086.780) (-4079.314) [-4074.094] (-4105.968) -- 0:13:31
198000 -- (-4081.474) (-4101.315) [-4068.955] (-4085.376) * (-4083.653) (-4073.541) [-4072.257] (-4088.929) -- 0:13:30
199000 -- [-4075.467] (-4082.805) (-4074.635) (-4082.774) * (-4085.822) (-4077.532) [-4080.497] (-4083.209) -- 0:13:29
200000 -- (-4112.648) (-4087.772) [-4072.252] (-4085.081) * [-4073.817] (-4088.412) (-4090.893) (-4075.610) -- 0:13:28
Average standard deviation of split frequencies: 0.018245
201000 -- (-4079.163) (-4102.667) [-4072.480] (-4081.203) * (-4078.769) (-4084.940) (-4073.676) [-4076.363] -- 0:13:26
202000 -- (-4082.392) (-4094.118) [-4075.459] (-4078.847) * (-4086.782) (-4086.665) [-4076.610] (-4088.127) -- 0:13:25
203000 -- [-4079.669] (-4079.509) (-4088.277) (-4074.270) * (-4086.229) (-4075.209) (-4088.670) [-4081.449] -- 0:13:24
204000 -- (-4078.066) (-4093.011) (-4088.644) [-4060.284] * [-4075.018] (-4089.330) (-4079.820) (-4086.214) -- 0:13:23
205000 -- (-4085.040) (-4100.515) (-4077.279) [-4072.459] * (-4088.411) [-4063.085] (-4090.233) (-4083.890) -- 0:13:22
Average standard deviation of split frequencies: 0.018012
206000 -- [-4077.018] (-4076.472) (-4079.623) (-4089.197) * (-4084.768) (-4073.030) (-4088.062) [-4080.516] -- 0:13:21
207000 -- (-4075.803) (-4088.254) [-4076.097] (-4087.185) * (-4083.401) (-4083.523) [-4075.899] (-4083.653) -- 0:13:20
208000 -- (-4071.008) [-4077.692] (-4083.126) (-4084.038) * (-4089.993) [-4071.096] (-4081.145) (-4088.484) -- 0:13:19
209000 -- (-4084.031) (-4096.683) (-4086.330) [-4070.992] * [-4070.925] (-4077.154) (-4079.801) (-4080.178) -- 0:13:18
210000 -- (-4101.461) (-4086.216) [-4080.209] (-4077.952) * [-4074.846] (-4085.551) (-4072.920) (-4086.685) -- 0:13:17
Average standard deviation of split frequencies: 0.018488
211000 -- [-4081.998] (-4099.148) (-4088.632) (-4084.187) * (-4084.363) [-4071.621] (-4082.621) (-4090.540) -- 0:13:16
212000 -- [-4083.791] (-4090.959) (-4090.319) (-4097.525) * (-4091.908) [-4074.192] (-4079.889) (-4089.538) -- 0:13:15
213000 -- (-4084.839) [-4076.429] (-4084.806) (-4083.527) * (-4077.671) (-4078.145) (-4085.889) [-4084.042] -- 0:13:14
214000 -- (-4090.524) [-4075.981] (-4083.029) (-4077.850) * [-4082.353] (-4081.177) (-4080.558) (-4077.125) -- 0:13:13
215000 -- (-4097.930) (-4082.026) [-4084.371] (-4090.411) * (-4098.921) (-4071.024) [-4079.551] (-4079.793) -- 0:13:12
Average standard deviation of split frequencies: 0.018533
216000 -- (-4089.545) [-4073.452] (-4091.544) (-4081.751) * (-4088.959) [-4075.190] (-4069.265) (-4076.230) -- 0:13:11
217000 -- (-4094.869) [-4079.079] (-4085.957) (-4071.207) * (-4088.034) (-4073.050) [-4079.306] (-4082.929) -- 0:13:10
218000 -- (-4081.407) [-4078.515] (-4088.433) (-4088.918) * (-4079.953) [-4075.737] (-4070.860) (-4101.792) -- 0:13:09
219000 -- (-4081.919) (-4102.397) (-4085.973) [-4077.120] * [-4071.381] (-4077.317) (-4088.601) (-4083.982) -- 0:13:08
220000 -- (-4079.291) [-4085.403] (-4079.158) (-4095.530) * [-4072.120] (-4074.427) (-4075.540) (-4086.224) -- 0:13:07
Average standard deviation of split frequencies: 0.018456
221000 -- (-4073.884) (-4083.773) (-4087.276) [-4089.396] * (-4089.265) [-4072.154] (-4080.523) (-4087.114) -- 0:13:06
222000 -- (-4090.410) (-4079.953) (-4111.119) [-4081.658] * (-4076.573) (-4086.576) [-4079.038] (-4080.726) -- 0:13:08
223000 -- (-4076.039) [-4079.796] (-4082.575) (-4079.854) * (-4094.927) (-4078.852) [-4071.777] (-4092.612) -- 0:13:07
224000 -- (-4104.898) (-4088.189) [-4076.560] (-4070.440) * (-4089.579) [-4073.228] (-4077.076) (-4082.448) -- 0:13:06
225000 -- (-4094.448) (-4085.969) (-4089.097) [-4069.505] * (-4064.961) (-4081.584) [-4070.590] (-4091.789) -- 0:13:05
Average standard deviation of split frequencies: 0.018369
226000 -- (-4092.524) (-4069.772) [-4071.819] (-4092.091) * (-4098.997) (-4072.813) [-4076.373] (-4095.210) -- 0:13:04
227000 -- (-4107.638) (-4072.475) [-4067.148] (-4106.440) * (-4104.925) (-4075.861) (-4091.487) [-4090.459] -- 0:13:03
228000 -- [-4077.280] (-4080.982) (-4073.286) (-4081.997) * (-4085.874) (-4084.136) [-4074.546] (-4097.591) -- 0:13:02
229000 -- (-4094.565) [-4079.500] (-4078.680) (-4094.538) * (-4091.800) (-4077.836) (-4077.335) [-4069.279] -- 0:13:01
230000 -- (-4083.680) [-4075.449] (-4076.067) (-4096.253) * (-4091.151) (-4079.734) [-4074.369] (-4081.159) -- 0:13:00
Average standard deviation of split frequencies: 0.018560
231000 -- (-4076.179) (-4093.915) (-4100.109) [-4078.036] * [-4081.891] (-4083.891) (-4089.518) (-4073.579) -- 0:12:58
232000 -- (-4085.044) (-4086.560) (-4074.204) [-4079.742] * (-4077.899) (-4102.978) [-4079.024] (-4077.867) -- 0:12:57
233000 -- (-4080.400) (-4088.613) (-4102.427) [-4077.830] * [-4083.447] (-4100.502) (-4078.473) (-4084.754) -- 0:12:56
234000 -- [-4069.934] (-4086.700) (-4096.037) (-4085.200) * [-4085.111] (-4096.130) (-4073.073) (-4097.295) -- 0:12:55
235000 -- (-4079.736) (-4087.430) (-4096.973) [-4071.930] * (-4084.304) (-4089.844) [-4081.495] (-4110.596) -- 0:12:54
Average standard deviation of split frequencies: 0.017944
236000 -- (-4079.722) (-4095.656) (-4092.788) [-4086.628] * (-4077.636) (-4084.096) [-4081.188] (-4097.321) -- 0:12:53
237000 -- (-4091.795) [-4092.458] (-4079.831) (-4076.195) * [-4076.362] (-4089.404) (-4084.424) (-4087.658) -- 0:12:52
238000 -- (-4087.227) [-4081.073] (-4086.346) (-4078.778) * (-4076.185) (-4084.223) (-4078.185) [-4072.355] -- 0:12:51
239000 -- [-4076.774] (-4078.874) (-4093.773) (-4077.777) * (-4073.099) (-4070.414) [-4079.150] (-4093.906) -- 0:12:50
240000 -- (-4077.389) (-4092.136) [-4076.897] (-4099.148) * (-4080.470) (-4076.149) [-4072.231] (-4083.268) -- 0:12:49
Average standard deviation of split frequencies: 0.017886
241000 -- [-4069.209] (-4073.832) (-4080.738) (-4094.788) * (-4088.210) [-4073.353] (-4091.318) (-4074.126) -- 0:12:48
242000 -- (-4075.095) [-4075.279] (-4099.055) (-4091.216) * (-4093.200) (-4081.241) [-4078.058] (-4084.373) -- 0:12:47
243000 -- (-4075.295) [-4070.623] (-4084.973) (-4077.375) * (-4084.409) (-4074.299) [-4089.516] (-4075.581) -- 0:12:46
244000 -- (-4080.684) [-4081.582] (-4096.205) (-4082.019) * (-4079.032) (-4097.422) [-4069.332] (-4086.615) -- 0:12:45
245000 -- (-4083.298) (-4094.244) (-4086.506) [-4067.675] * (-4081.325) [-4070.134] (-4102.660) (-4092.653) -- 0:12:44
Average standard deviation of split frequencies: 0.018032
246000 -- (-4082.516) (-4091.251) (-4072.636) [-4091.558] * [-4074.209] (-4095.641) (-4077.439) (-4081.363) -- 0:12:43
247000 -- (-4085.893) (-4074.109) [-4072.186] (-4123.231) * (-4085.154) (-4098.352) (-4075.379) [-4081.584] -- 0:12:42
248000 -- (-4084.608) (-4087.127) [-4072.140] (-4089.940) * [-4071.040] (-4079.980) (-4092.868) (-4077.352) -- 0:12:41
249000 -- (-4087.750) [-4070.694] (-4089.870) (-4086.583) * [-4070.734] (-4089.406) (-4070.975) (-4092.676) -- 0:12:40
250000 -- (-4089.694) (-4071.881) (-4074.731) [-4061.456] * [-4077.532] (-4110.135) (-4091.729) (-4090.661) -- 0:12:39
Average standard deviation of split frequencies: 0.017552
251000 -- (-4080.466) (-4075.812) (-4081.287) [-4072.720] * (-4083.424) (-4094.403) (-4073.706) [-4072.079] -- 0:12:37
252000 -- (-4080.941) (-4080.648) [-4076.534] (-4077.971) * [-4075.030] (-4080.747) (-4077.901) (-4085.996) -- 0:12:36
253000 -- (-4080.022) [-4087.235] (-4078.459) (-4103.103) * (-4085.554) (-4077.203) [-4084.951] (-4090.014) -- 0:12:35
254000 -- [-4078.182] (-4084.388) (-4078.455) (-4072.642) * (-4073.956) (-4076.059) [-4071.102] (-4088.454) -- 0:12:34
255000 -- (-4083.532) (-4090.222) [-4072.446] (-4095.095) * (-4099.829) [-4081.567] (-4093.604) (-4080.690) -- 0:12:33
Average standard deviation of split frequencies: 0.017430
256000 -- (-4069.006) [-4086.449] (-4076.810) (-4086.579) * [-4084.743] (-4084.838) (-4087.901) (-4075.144) -- 0:12:32
257000 -- (-4105.546) [-4067.206] (-4080.456) (-4086.080) * (-4074.151) (-4107.558) (-4079.371) [-4085.777] -- 0:12:31
258000 -- (-4090.813) [-4065.870] (-4090.337) (-4076.259) * [-4077.492] (-4093.162) (-4086.447) (-4086.000) -- 0:12:30
259000 -- [-4081.583] (-4089.926) (-4086.894) (-4087.800) * [-4078.807] (-4086.489) (-4083.802) (-4087.171) -- 0:12:29
260000 -- (-4078.886) [-4072.326] (-4094.117) (-4085.388) * (-4072.424) (-4070.107) [-4074.277] (-4103.280) -- 0:12:28
Average standard deviation of split frequencies: 0.017710
261000 -- [-4079.015] (-4091.656) (-4082.992) (-4081.427) * (-4095.186) (-4106.366) (-4111.315) [-4070.337] -- 0:12:27
262000 -- (-4085.973) (-4083.586) (-4077.007) [-4071.699] * (-4078.386) [-4073.111] (-4084.544) (-4082.342) -- 0:12:26
263000 -- (-4078.722) (-4073.511) (-4079.418) [-4071.759] * (-4081.541) [-4065.512] (-4098.005) (-4087.074) -- 0:12:25
264000 -- (-4072.907) (-4078.017) (-4100.459) [-4092.138] * (-4080.362) [-4069.098] (-4095.481) (-4085.127) -- 0:12:24
265000 -- (-4075.740) (-4075.719) (-4084.316) [-4082.217] * (-4092.795) (-4096.155) [-4086.700] (-4074.257) -- 0:12:23
Average standard deviation of split frequencies: 0.017091
266000 -- (-4072.703) (-4081.346) (-4092.577) [-4063.369] * [-4084.734] (-4087.661) (-4077.661) (-4091.517) -- 0:12:22
267000 -- (-4107.585) (-4083.061) [-4079.081] (-4066.679) * (-4079.531) (-4093.687) [-4088.007] (-4087.550) -- 0:12:21
268000 -- (-4102.809) (-4077.738) [-4078.643] (-4079.066) * (-4070.960) (-4102.857) (-4078.846) [-4082.245] -- 0:12:20
269000 -- [-4074.686] (-4088.927) (-4080.882) (-4068.245) * (-4094.975) (-4084.806) (-4096.820) [-4083.117] -- 0:12:19
270000 -- [-4088.436] (-4095.939) (-4088.184) (-4072.767) * (-4078.414) (-4086.464) [-4079.098] (-4084.062) -- 0:12:18
Average standard deviation of split frequencies: 0.016118
271000 -- (-4083.502) (-4087.278) (-4079.350) [-4083.077] * [-4083.061] (-4086.953) (-4082.738) (-4086.996) -- 0:12:17
272000 -- (-4083.861) [-4083.050] (-4081.969) (-4091.268) * (-4081.104) (-4094.445) (-4076.403) [-4082.831] -- 0:12:16
273000 -- [-4074.375] (-4084.888) (-4085.162) (-4085.353) * (-4082.043) [-4075.432] (-4081.743) (-4069.512) -- 0:12:14
274000 -- (-4071.680) (-4084.578) (-4100.397) [-4074.213] * (-4083.499) (-4086.888) (-4104.201) [-4079.423] -- 0:12:13
275000 -- [-4072.591] (-4076.345) (-4079.125) (-4083.880) * (-4091.496) (-4079.902) [-4064.391] (-4088.504) -- 0:12:15
Average standard deviation of split frequencies: 0.015799
276000 -- (-4090.660) (-4093.156) [-4080.537] (-4089.607) * (-4091.808) (-4085.821) [-4081.897] (-4081.865) -- 0:12:14
277000 -- (-4064.250) [-4087.964] (-4087.595) (-4080.311) * (-4091.213) [-4083.112] (-4085.427) (-4078.866) -- 0:12:13
278000 -- (-4079.879) [-4078.626] (-4079.472) (-4083.501) * (-4087.434) (-4091.506) [-4082.479] (-4076.303) -- 0:12:12
279000 -- (-4091.130) (-4074.791) (-4073.176) [-4067.354] * [-4074.595] (-4090.319) (-4084.939) (-4083.334) -- 0:12:11
280000 -- (-4087.357) (-4092.085) [-4074.986] (-4074.501) * (-4080.980) (-4089.497) (-4108.700) [-4088.193] -- 0:12:10
Average standard deviation of split frequencies: 0.015256
281000 -- [-4069.240] (-4094.440) (-4085.741) (-4082.947) * (-4113.441) [-4074.772] (-4082.201) (-4099.024) -- 0:12:09
282000 -- (-4089.758) (-4098.556) (-4098.688) [-4082.019] * [-4081.846] (-4083.963) (-4081.131) (-4075.015) -- 0:12:08
283000 -- (-4092.550) (-4100.713) (-4089.472) [-4062.354] * (-4092.789) [-4075.509] (-4085.292) (-4088.066) -- 0:12:07
284000 -- (-4089.210) [-4075.607] (-4082.108) (-4083.828) * [-4075.975] (-4086.817) (-4094.837) (-4085.073) -- 0:12:06
285000 -- [-4084.085] (-4096.958) (-4082.523) (-4072.389) * (-4090.654) (-4075.192) (-4082.531) [-4081.373] -- 0:12:07
Average standard deviation of split frequencies: 0.015564
286000 -- (-4091.320) (-4082.855) (-4075.592) [-4072.993] * (-4088.681) [-4073.033] (-4088.318) (-4082.451) -- 0:12:03
287000 -- (-4073.680) (-4083.256) (-4082.785) [-4078.243] * (-4076.914) (-4087.909) [-4074.376] (-4088.019) -- 0:12:05
288000 -- (-4081.205) [-4078.627] (-4078.642) (-4070.583) * (-4089.455) (-4074.178) [-4079.789] (-4086.914) -- 0:12:01
289000 -- (-4076.628) (-4086.777) [-4072.040] (-4094.237) * [-4082.447] (-4098.932) (-4088.498) (-4081.835) -- 0:12:00
290000 -- (-4091.246) [-4081.826] (-4084.474) (-4087.161) * (-4079.392) [-4080.589] (-4082.605) (-4088.751) -- 0:11:59
Average standard deviation of split frequencies: 0.014889
291000 -- [-4082.782] (-4091.027) (-4079.807) (-4092.271) * [-4075.462] (-4082.264) (-4088.143) (-4088.275) -- 0:11:58
292000 -- (-4072.537) [-4082.449] (-4089.368) (-4084.557) * [-4082.122] (-4098.036) (-4082.235) (-4083.247) -- 0:11:57
293000 -- (-4086.237) (-4085.863) [-4077.233] (-4077.011) * (-4092.790) (-4096.571) [-4078.545] (-4102.248) -- 0:11:56
294000 -- (-4090.693) [-4090.040] (-4081.681) (-4083.490) * (-4081.270) (-4076.829) [-4070.652] (-4090.424) -- 0:11:55
295000 -- [-4079.438] (-4081.573) (-4095.270) (-4071.611) * (-4083.103) (-4082.716) (-4082.511) [-4068.659] -- 0:11:54
Average standard deviation of split frequencies: 0.014960
296000 -- (-4092.944) [-4074.186] (-4098.875) (-4079.538) * [-4075.427] (-4079.089) (-4083.259) (-4083.846) -- 0:11:53
297000 -- [-4069.219] (-4071.983) (-4090.858) (-4090.948) * (-4088.934) (-4085.036) [-4075.519] (-4084.352) -- 0:11:52
298000 -- [-4065.319] (-4101.705) (-4088.017) (-4088.557) * (-4088.348) [-4078.498] (-4095.379) (-4080.477) -- 0:11:51
299000 -- (-4078.451) (-4086.158) (-4106.544) [-4074.573] * (-4082.032) (-4088.274) (-4086.279) [-4073.245] -- 0:11:50
300000 -- (-4073.269) [-4069.048] (-4094.096) (-4082.584) * (-4094.381) [-4079.677] (-4077.497) (-4087.407) -- 0:11:49
Average standard deviation of split frequencies: 0.015104
301000 -- (-4089.904) (-4087.578) (-4071.748) [-4076.493] * (-4091.845) (-4078.950) [-4072.182] (-4083.606) -- 0:11:48
302000 -- (-4080.971) (-4080.341) [-4074.722] (-4080.293) * (-4068.741) [-4063.245] (-4072.464) (-4087.361) -- 0:11:47
303000 -- (-4076.469) (-4079.804) [-4084.950] (-4081.097) * [-4069.200] (-4077.335) (-4088.745) (-4090.677) -- 0:11:46
304000 -- [-4070.808] (-4086.142) (-4079.228) (-4084.085) * [-4071.559] (-4084.986) (-4093.503) (-4083.047) -- 0:11:45
305000 -- [-4063.040] (-4074.569) (-4082.218) (-4097.308) * (-4077.757) (-4082.078) (-4094.574) [-4082.932] -- 0:11:44
Average standard deviation of split frequencies: 0.015405
306000 -- (-4088.466) [-4067.908] (-4070.383) (-4085.385) * (-4089.002) (-4066.825) [-4084.634] (-4086.650) -- 0:11:43
307000 -- [-4079.456] (-4090.143) (-4081.384) (-4088.624) * (-4085.919) (-4101.100) (-4078.342) [-4088.686] -- 0:11:44
308000 -- (-4089.895) (-4089.648) [-4079.693] (-4075.665) * (-4082.873) (-4091.022) [-4078.118] (-4077.603) -- 0:11:40
309000 -- (-4101.051) [-4066.559] (-4096.626) (-4075.210) * (-4072.031) (-4071.756) [-4077.956] (-4095.307) -- 0:11:39
310000 -- (-4091.422) (-4078.913) (-4091.358) [-4077.464] * [-4077.141] (-4091.049) (-4090.649) (-4087.967) -- 0:11:38
Average standard deviation of split frequencies: 0.015477
311000 -- (-4084.196) [-4072.095] (-4084.579) (-4099.790) * (-4085.417) [-4075.916] (-4087.457) (-4073.964) -- 0:11:37
312000 -- [-4076.052] (-4082.713) (-4096.124) (-4079.318) * [-4072.655] (-4084.250) (-4083.088) (-4077.656) -- 0:11:36
313000 -- (-4088.722) [-4085.392] (-4078.548) (-4083.996) * (-4075.989) (-4099.410) (-4088.464) [-4080.739] -- 0:11:35
314000 -- (-4077.719) (-4094.823) [-4081.056] (-4091.427) * (-4094.219) (-4096.017) [-4081.022] (-4068.236) -- 0:11:34
315000 -- (-4070.759) (-4087.097) (-4088.303) [-4085.645] * (-4081.225) [-4105.213] (-4088.996) (-4076.287) -- 0:11:33
Average standard deviation of split frequencies: 0.015117
316000 -- (-4080.949) (-4083.741) [-4075.131] (-4077.001) * (-4085.132) (-4087.387) (-4097.707) [-4087.916] -- 0:11:32
317000 -- (-4077.215) [-4075.566] (-4093.951) (-4079.076) * [-4082.420] (-4084.378) (-4084.279) (-4087.783) -- 0:11:31
318000 -- (-4080.685) [-4082.037] (-4076.784) (-4089.727) * [-4077.253] (-4084.044) (-4100.408) (-4072.226) -- 0:11:30
319000 -- (-4087.227) (-4089.447) [-4066.417] (-4094.884) * (-4079.456) (-4085.964) [-4077.865] (-4071.764) -- 0:11:29
320000 -- (-4087.529) (-4093.406) (-4065.591) [-4078.234] * (-4068.398) (-4082.329) [-4078.088] (-4079.869) -- 0:11:28
Average standard deviation of split frequencies: 0.014995
321000 -- (-4086.594) (-4085.828) [-4075.888] (-4094.770) * [-4069.117] (-4081.428) (-4096.434) (-4079.356) -- 0:11:27
322000 -- (-4086.604) (-4072.543) [-4065.888] (-4077.634) * (-4078.557) [-4072.946] (-4082.670) (-4082.944) -- 0:11:26
323000 -- (-4080.196) (-4079.245) [-4082.599] (-4086.060) * (-4082.837) [-4077.192] (-4094.725) (-4081.615) -- 0:11:25
324000 -- (-4089.831) [-4068.189] (-4086.339) (-4089.469) * [-4068.253] (-4088.367) (-4097.813) (-4082.260) -- 0:11:24
325000 -- [-4081.828] (-4077.221) (-4091.264) (-4076.632) * (-4079.162) (-4090.964) (-4088.986) [-4079.550] -- 0:11:23
Average standard deviation of split frequencies: 0.014918
326000 -- (-4082.921) (-4087.332) (-4096.364) [-4070.835] * [-4078.912] (-4083.367) (-4092.565) (-4078.702) -- 0:11:22
327000 -- (-4069.940) (-4079.066) (-4081.355) [-4072.823] * (-4089.427) (-4080.150) (-4078.992) [-4075.115] -- 0:11:23
328000 -- (-4082.260) (-4087.035) (-4084.292) [-4069.239] * (-4093.993) (-4087.604) (-4080.036) [-4080.435] -- 0:11:22
329000 -- [-4074.501] (-4085.120) (-4084.290) (-4078.350) * (-4095.458) (-4098.912) (-4075.779) [-4077.160] -- 0:11:21
330000 -- [-4074.068] (-4095.930) (-4095.064) (-4082.586) * [-4084.179] (-4089.213) (-4080.978) (-4086.748) -- 0:11:20
Average standard deviation of split frequencies: 0.014874
331000 -- (-4086.762) [-4077.858] (-4090.414) (-4098.252) * [-4062.908] (-4100.816) (-4066.069) (-4091.444) -- 0:11:19
332000 -- (-4091.225) [-4079.295] (-4081.113) (-4099.395) * [-4081.405] (-4080.933) (-4085.633) (-4085.041) -- 0:11:18
333000 -- (-4102.303) [-4080.139] (-4075.179) (-4091.040) * (-4078.097) (-4084.989) [-4078.678] (-4082.596) -- 0:11:17
334000 -- (-4085.272) (-4085.625) (-4080.754) [-4075.985] * [-4081.522] (-4078.865) (-4086.018) (-4082.114) -- 0:11:15
335000 -- [-4075.193] (-4096.345) (-4074.847) (-4082.374) * (-4078.812) (-4083.960) (-4082.888) [-4077.463] -- 0:11:14
Average standard deviation of split frequencies: 0.014638
336000 -- (-4085.065) (-4083.282) (-4071.686) [-4067.200] * (-4101.825) (-4092.663) [-4077.229] (-4082.839) -- 0:11:13
337000 -- (-4088.982) [-4075.976] (-4078.142) (-4095.005) * (-4084.209) (-4085.305) [-4083.187] (-4102.024) -- 0:11:12
338000 -- (-4087.324) (-4078.448) (-4073.845) [-4095.140] * (-4090.153) (-4076.932) [-4079.390] (-4088.658) -- 0:11:11
339000 -- [-4074.087] (-4090.761) (-4073.510) (-4082.561) * (-4073.552) (-4081.388) [-4073.951] (-4089.495) -- 0:11:10
340000 -- [-4073.781] (-4075.485) (-4097.714) (-4085.592) * (-4095.892) (-4093.333) (-4084.051) [-4082.813] -- 0:11:09
Average standard deviation of split frequencies: 0.014576
341000 -- (-4075.532) (-4081.463) [-4065.563] (-4091.595) * (-4086.472) [-4082.678] (-4082.300) (-4091.057) -- 0:11:08
342000 -- (-4084.603) (-4078.171) (-4102.521) [-4080.730] * [-4081.720] (-4086.366) (-4107.530) (-4071.025) -- 0:11:07
343000 -- (-4070.207) (-4088.648) [-4072.283] (-4080.864) * [-4072.373] (-4092.221) (-4086.150) (-4078.255) -- 0:11:06
344000 -- (-4087.256) [-4084.027] (-4093.368) (-4086.145) * (-4068.676) [-4071.342] (-4091.680) (-4094.436) -- 0:11:05
345000 -- (-4090.674) [-4084.689] (-4082.913) (-4083.752) * [-4073.611] (-4083.817) (-4084.078) (-4089.797) -- 0:11:04
Average standard deviation of split frequencies: 0.014495
346000 -- (-4090.332) (-4085.743) (-4086.071) [-4075.249] * (-4088.458) (-4085.709) (-4083.734) [-4083.939] -- 0:11:03
347000 -- (-4081.371) (-4086.045) [-4077.672] (-4089.076) * (-4088.491) (-4075.290) (-4086.098) [-4083.289] -- 0:11:02
348000 -- (-4085.748) [-4071.713] (-4088.716) (-4084.866) * (-4085.825) [-4092.793] (-4084.105) (-4088.821) -- 0:11:01
349000 -- (-4085.812) (-4078.721) (-4090.820) [-4080.903] * [-4073.079] (-4080.736) (-4092.879) (-4091.140) -- 0:11:00
350000 -- (-4085.912) (-4085.058) (-4086.959) [-4081.703] * [-4073.738] (-4096.152) (-4081.455) (-4091.542) -- 0:10:59
Average standard deviation of split frequencies: 0.014182
351000 -- (-4080.622) (-4093.259) [-4064.261] (-4082.881) * (-4079.931) (-4080.948) (-4091.467) [-4075.397] -- 0:10:58
352000 -- [-4080.054] (-4091.434) (-4077.739) (-4098.798) * [-4078.167] (-4097.210) (-4075.941) (-4079.486) -- 0:10:57
353000 -- [-4076.615] (-4086.195) (-4106.775) (-4077.176) * [-4082.466] (-4076.215) (-4076.927) (-4106.793) -- 0:10:56
354000 -- [-4072.624] (-4090.289) (-4090.131) (-4083.624) * [-4080.630] (-4082.908) (-4076.840) (-4086.766) -- 0:10:55
355000 -- (-4076.140) [-4078.838] (-4094.164) (-4093.282) * (-4088.270) (-4087.445) (-4069.253) [-4080.325] -- 0:10:54
Average standard deviation of split frequencies: 0.014345
356000 -- (-4102.523) [-4077.959] (-4098.738) (-4088.432) * (-4084.146) (-4080.555) [-4077.358] (-4078.567) -- 0:10:53
357000 -- (-4080.707) (-4079.686) [-4081.117] (-4086.775) * (-4088.762) [-4087.107] (-4078.927) (-4093.373) -- 0:10:52
358000 -- [-4069.376] (-4091.785) (-4084.527) (-4089.789) * (-4078.976) (-4068.119) (-4085.886) [-4081.443] -- 0:10:50
359000 -- [-4070.998] (-4077.752) (-4098.675) (-4079.015) * (-4090.496) [-4076.124] (-4084.005) (-4085.859) -- 0:10:49
360000 -- (-4089.673) (-4080.879) [-4073.434] (-4079.623) * (-4076.982) (-4076.377) (-4081.884) [-4074.714] -- 0:10:48
Average standard deviation of split frequencies: 0.014312
361000 -- (-4086.650) (-4082.942) [-4077.022] (-4095.068) * (-4086.240) (-4074.430) [-4086.273] (-4078.021) -- 0:10:47
362000 -- (-4081.841) (-4088.923) [-4079.653] (-4076.217) * (-4100.576) [-4074.232] (-4090.307) (-4074.379) -- 0:10:46
363000 -- (-4086.490) (-4103.969) (-4075.777) [-4070.063] * (-4094.787) [-4079.475] (-4083.573) (-4085.059) -- 0:10:45
364000 -- (-4095.431) (-4083.375) [-4078.339] (-4075.031) * (-4094.082) [-4080.230] (-4080.380) (-4071.889) -- 0:10:44
365000 -- (-4110.303) (-4081.013) (-4087.692) [-4074.295] * (-4079.430) [-4075.564] (-4073.336) (-4082.511) -- 0:10:43
Average standard deviation of split frequencies: 0.013867
366000 -- (-4084.162) [-4078.977] (-4081.069) (-4093.729) * (-4089.728) [-4076.021] (-4073.329) (-4079.915) -- 0:10:42
367000 -- (-4083.767) (-4093.004) [-4072.632] (-4090.941) * (-4083.639) [-4063.138] (-4088.948) (-4085.922) -- 0:10:41
368000 -- (-4097.350) [-4080.965] (-4073.385) (-4084.928) * (-4085.083) (-4077.171) [-4093.616] (-4092.861) -- 0:10:40
369000 -- (-4074.860) (-4067.400) (-4103.454) [-4080.377] * (-4080.338) (-4093.108) [-4073.744] (-4084.846) -- 0:10:39
370000 -- [-4082.220] (-4082.826) (-4085.094) (-4084.425) * (-4080.286) [-4088.100] (-4095.515) (-4079.155) -- 0:10:38
Average standard deviation of split frequencies: 0.013672
371000 -- (-4083.210) (-4082.809) (-4081.029) [-4070.516] * [-4077.787] (-4098.252) (-4090.308) (-4082.130) -- 0:10:37
372000 -- (-4096.017) (-4075.535) [-4073.064] (-4078.669) * (-4080.979) (-4089.171) (-4093.951) [-4073.837] -- 0:10:36
373000 -- (-4084.645) (-4088.657) (-4087.721) [-4068.384] * (-4084.223) (-4081.908) (-4082.164) [-4079.189] -- 0:10:35
374000 -- (-4081.418) (-4101.381) [-4066.295] (-4080.642) * (-4081.596) [-4092.117] (-4098.060) (-4078.244) -- 0:10:34
375000 -- (-4101.946) (-4091.191) (-4076.069) [-4074.819] * (-4077.208) (-4080.643) [-4077.327] (-4094.407) -- 0:10:33
Average standard deviation of split frequencies: 0.013579
376000 -- [-4072.483] (-4087.814) (-4083.722) (-4070.283) * (-4084.709) (-4091.970) (-4092.365) [-4088.639] -- 0:10:32
377000 -- (-4095.598) (-4095.499) (-4076.584) [-4075.195] * (-4082.311) (-4085.267) [-4082.440] (-4080.466) -- 0:10:31
378000 -- [-4081.827] (-4081.395) (-4095.289) (-4084.970) * (-4084.402) (-4084.875) (-4079.988) [-4085.344] -- 0:10:30
379000 -- (-4067.492) (-4093.090) [-4088.457] (-4073.682) * (-4095.827) (-4081.172) (-4080.987) [-4092.136] -- 0:10:29
380000 -- (-4081.774) [-4072.999] (-4083.873) (-4075.915) * (-4083.729) [-4073.194] (-4084.590) (-4086.596) -- 0:10:28
Average standard deviation of split frequencies: 0.013181
381000 -- (-4088.044) (-4087.383) (-4092.915) [-4081.322] * (-4083.702) (-4084.328) [-4082.149] (-4077.087) -- 0:10:27
382000 -- (-4090.876) (-4086.562) (-4081.387) [-4083.777] * (-4079.648) [-4075.892] (-4090.934) (-4100.649) -- 0:10:26
383000 -- (-4086.575) (-4073.169) [-4070.578] (-4077.322) * (-4086.597) (-4087.414) [-4075.166] (-4094.879) -- 0:10:25
384000 -- (-4092.281) [-4074.565] (-4075.695) (-4079.896) * [-4080.124] (-4080.922) (-4077.766) (-4085.392) -- 0:10:24
385000 -- (-4083.852) (-4093.023) (-4077.021) [-4078.735] * (-4080.494) [-4067.972] (-4082.793) (-4091.329) -- 0:10:22
Average standard deviation of split frequencies: 0.012660
386000 -- [-4078.973] (-4087.759) (-4100.179) (-4100.562) * (-4095.311) [-4074.025] (-4082.899) (-4081.516) -- 0:10:21
387000 -- (-4086.140) (-4081.691) (-4090.156) [-4074.667] * (-4078.165) (-4076.386) [-4075.257] (-4082.709) -- 0:10:20
388000 -- (-4081.582) [-4085.822] (-4088.648) (-4078.027) * (-4084.163) (-4086.650) [-4081.694] (-4083.083) -- 0:10:19
389000 -- (-4083.871) (-4078.401) [-4065.684] (-4081.869) * [-4076.416] (-4088.391) (-4077.968) (-4078.640) -- 0:10:18
390000 -- (-4093.609) (-4075.852) (-4086.865) [-4086.127] * (-4074.486) [-4086.500] (-4097.264) (-4079.919) -- 0:10:17
Average standard deviation of split frequencies: 0.013253
391000 -- (-4070.624) [-4079.168] (-4101.293) (-4079.123) * (-4094.179) (-4079.231) (-4086.154) [-4072.910] -- 0:10:16
392000 -- (-4083.516) (-4086.070) [-4086.694] (-4078.698) * (-4099.946) (-4079.661) [-4078.257] (-4077.805) -- 0:10:15
393000 -- (-4069.355) (-4078.226) [-4064.675] (-4079.788) * (-4085.194) (-4090.771) (-4095.209) [-4066.534] -- 0:10:14
394000 -- [-4068.219] (-4075.603) (-4075.356) (-4088.755) * (-4103.294) [-4071.941] (-4082.919) (-4095.966) -- 0:10:13
395000 -- (-4085.008) (-4079.708) [-4077.179] (-4093.706) * (-4066.850) [-4073.582] (-4078.623) (-4080.475) -- 0:10:12
Average standard deviation of split frequencies: 0.013357
396000 -- [-4077.657] (-4096.880) (-4082.229) (-4078.850) * [-4078.360] (-4076.477) (-4082.428) (-4078.072) -- 0:10:11
397000 -- [-4071.029] (-4089.580) (-4084.975) (-4076.080) * (-4084.307) (-4084.196) (-4102.922) [-4068.530] -- 0:10:10
398000 -- (-4097.783) [-4084.238] (-4096.399) (-4091.252) * (-4094.323) (-4075.099) (-4098.653) [-4082.000] -- 0:10:09
399000 -- (-4088.310) (-4095.999) [-4074.175] (-4087.390) * (-4085.369) (-4082.802) (-4091.788) [-4072.500] -- 0:10:08
400000 -- (-4086.045) (-4087.487) (-4088.226) [-4081.801] * (-4077.722) [-4070.936] (-4093.850) (-4089.528) -- 0:10:07
Average standard deviation of split frequencies: 0.013082
401000 -- (-4079.394) [-4065.040] (-4077.854) (-4098.627) * [-4066.494] (-4093.361) (-4090.534) (-4083.195) -- 0:10:06
402000 -- (-4076.849) (-4077.404) (-4084.704) [-4085.306] * (-4082.590) (-4079.198) (-4087.724) [-4081.841] -- 0:10:05
403000 -- (-4096.877) (-4084.935) [-4078.901] (-4081.814) * (-4068.443) (-4095.944) (-4086.412) [-4079.394] -- 0:10:04
404000 -- [-4071.189] (-4072.621) (-4085.451) (-4084.861) * [-4075.223] (-4080.748) (-4090.502) (-4091.148) -- 0:10:03
405000 -- (-4077.332) (-4080.466) [-4079.750] (-4083.016) * (-4093.697) (-4079.686) (-4089.593) [-4076.852] -- 0:10:02
Average standard deviation of split frequencies: 0.012890
406000 -- (-4075.292) (-4084.478) (-4078.449) [-4073.839] * (-4077.502) (-4083.732) [-4076.132] (-4086.903) -- 0:10:01
407000 -- (-4090.721) (-4082.937) (-4074.779) [-4084.812] * (-4076.911) [-4092.756] (-4091.564) (-4071.551) -- 0:10:00
408000 -- (-4091.133) (-4096.894) [-4075.846] (-4079.068) * [-4081.554] (-4086.216) (-4073.768) (-4082.463) -- 0:09:59
409000 -- (-4080.978) (-4097.981) (-4080.458) [-4071.453] * (-4088.098) [-4078.045] (-4091.476) (-4077.612) -- 0:09:58
410000 -- (-4080.287) (-4078.150) [-4064.773] (-4095.249) * (-4098.146) (-4088.005) [-4081.715] (-4082.686) -- 0:09:57
Average standard deviation of split frequencies: 0.012374
411000 -- (-4094.075) (-4075.007) [-4072.021] (-4082.615) * (-4080.356) (-4082.818) [-4077.683] (-4084.555) -- 0:09:56
412000 -- (-4080.715) [-4069.155] (-4089.423) (-4076.289) * [-4076.028] (-4071.864) (-4066.235) (-4092.008) -- 0:09:55
413000 -- (-4080.000) (-4074.296) (-4090.635) [-4067.184] * [-4077.253] (-4092.281) (-4088.073) (-4095.130) -- 0:09:54
414000 -- (-4093.120) (-4085.093) (-4104.831) [-4068.955] * [-4071.346] (-4084.063) (-4093.215) (-4079.640) -- 0:09:53
415000 -- [-4077.265] (-4083.186) (-4077.163) (-4075.087) * (-4079.648) (-4083.664) (-4077.536) [-4077.773] -- 0:09:52
Average standard deviation of split frequencies: 0.012273
416000 -- [-4078.008] (-4102.719) (-4094.761) (-4075.961) * (-4091.056) (-4091.255) [-4076.233] (-4094.593) -- 0:09:51
417000 -- (-4092.472) (-4086.865) [-4082.189] (-4091.914) * (-4099.718) [-4083.082] (-4085.722) (-4079.140) -- 0:09:49
418000 -- (-4074.681) [-4077.860] (-4093.531) (-4074.254) * (-4092.298) [-4080.635] (-4094.193) (-4079.151) -- 0:09:48
419000 -- [-4083.104] (-4092.556) (-4095.254) (-4076.716) * (-4081.753) (-4085.394) [-4071.052] (-4080.901) -- 0:09:47
420000 -- (-4085.189) [-4078.956] (-4075.105) (-4108.030) * (-4076.921) [-4087.822] (-4098.193) (-4086.479) -- 0:09:46
Average standard deviation of split frequencies: 0.011882
421000 -- (-4058.858) (-4078.454) (-4096.889) [-4072.885] * [-4078.229] (-4090.775) (-4097.666) (-4087.115) -- 0:09:45
422000 -- (-4077.972) [-4081.148] (-4102.462) (-4073.907) * (-4088.911) [-4077.315] (-4083.534) (-4098.014) -- 0:09:44
423000 -- (-4092.918) [-4070.364] (-4078.081) (-4078.356) * (-4082.947) (-4088.432) (-4086.404) [-4075.788] -- 0:09:43
424000 -- (-4109.194) [-4076.327] (-4088.379) (-4084.041) * (-4088.009) (-4078.755) (-4084.006) [-4085.274] -- 0:09:42
425000 -- (-4088.515) (-4092.534) [-4071.386] (-4095.371) * (-4081.241) [-4080.256] (-4092.704) (-4077.325) -- 0:09:41
Average standard deviation of split frequencies: 0.012134
426000 -- (-4087.251) (-4095.964) (-4090.099) [-4076.374] * (-4081.538) [-4081.628] (-4077.371) (-4083.203) -- 0:09:40
427000 -- (-4081.617) (-4079.678) [-4084.235] (-4087.092) * (-4081.850) (-4070.620) [-4071.168] (-4085.597) -- 0:09:39
428000 -- (-4084.838) (-4095.283) [-4084.062] (-4090.035) * (-4096.379) [-4070.094] (-4074.889) (-4079.627) -- 0:09:38
429000 -- (-4090.325) (-4089.498) [-4079.324] (-4078.940) * (-4074.645) (-4080.241) (-4072.431) [-4076.260] -- 0:09:37
430000 -- (-4101.012) (-4089.911) (-4075.801) [-4068.373] * [-4085.811] (-4083.604) (-4077.107) (-4092.648) -- 0:09:36
Average standard deviation of split frequencies: 0.012154
431000 -- (-4084.306) (-4087.813) (-4069.934) [-4067.754] * (-4074.671) (-4082.989) [-4066.543] (-4084.223) -- 0:09:35
432000 -- (-4083.026) (-4095.357) [-4069.518] (-4080.505) * (-4078.981) [-4070.288] (-4081.992) (-4095.062) -- 0:09:34
433000 -- (-4092.635) [-4083.316] (-4096.939) (-4075.482) * (-4088.758) (-4081.591) (-4083.047) [-4078.668] -- 0:09:33
434000 -- (-4083.034) [-4086.578] (-4090.754) (-4083.384) * (-4088.708) [-4074.825] (-4082.685) (-4077.676) -- 0:09:32
435000 -- (-4094.825) (-4082.268) [-4081.839] (-4094.915) * [-4069.480] (-4073.108) (-4086.834) (-4072.747) -- 0:09:31
Average standard deviation of split frequencies: 0.011857
436000 -- (-4075.604) (-4095.595) [-4069.754] (-4082.459) * [-4072.461] (-4082.816) (-4084.896) (-4089.502) -- 0:09:30
437000 -- (-4076.516) [-4081.693] (-4088.832) (-4089.272) * [-4065.109] (-4089.874) (-4089.215) (-4089.724) -- 0:09:29
438000 -- [-4077.245] (-4085.795) (-4075.634) (-4078.501) * [-4068.912] (-4077.180) (-4096.735) (-4089.941) -- 0:09:28
439000 -- [-4071.518] (-4072.787) (-4095.153) (-4085.670) * (-4082.806) [-4068.752] (-4079.305) (-4092.122) -- 0:09:27
440000 -- (-4075.590) [-4083.950] (-4087.767) (-4085.625) * (-4082.133) [-4070.725] (-4100.765) (-4090.511) -- 0:09:26
Average standard deviation of split frequencies: 0.011620
441000 -- [-4081.500] (-4078.412) (-4099.317) (-4075.226) * [-4075.946] (-4075.712) (-4073.894) (-4095.395) -- 0:09:25
442000 -- (-4077.737) [-4063.937] (-4066.941) (-4074.587) * (-4077.147) (-4076.263) [-4083.493] (-4078.923) -- 0:09:24
443000 -- (-4094.756) (-4087.650) (-4106.626) [-4074.729] * (-4076.164) [-4070.970] (-4091.370) (-4099.683) -- 0:09:23
444000 -- [-4099.084] (-4086.128) (-4081.833) (-4079.869) * (-4094.785) [-4090.712] (-4084.183) (-4084.252) -- 0:09:22
445000 -- (-4092.182) (-4077.159) [-4082.014] (-4075.270) * (-4070.972) [-4072.945] (-4089.200) (-4076.720) -- 0:09:21
Average standard deviation of split frequencies: 0.011859
446000 -- [-4087.292] (-4071.827) (-4076.201) (-4077.071) * [-4085.375] (-4087.559) (-4084.529) (-4085.202) -- 0:09:20
447000 -- (-4081.117) (-4093.476) [-4081.622] (-4100.338) * [-4076.694] (-4084.321) (-4082.612) (-4076.479) -- 0:09:19
448000 -- (-4091.674) (-4083.681) (-4076.317) [-4084.147] * (-4099.881) (-4079.165) (-4086.073) [-4078.814] -- 0:09:18
449000 -- (-4084.610) (-4091.048) (-4097.387) [-4079.089] * (-4082.988) [-4078.705] (-4091.265) (-4090.608) -- 0:09:18
450000 -- (-4086.977) (-4087.408) [-4074.749] (-4078.040) * [-4073.942] (-4087.647) (-4091.371) (-4076.409) -- 0:09:16
Average standard deviation of split frequencies: 0.011795
451000 -- (-4092.077) (-4082.807) (-4084.350) [-4082.748] * [-4072.656] (-4083.245) (-4092.792) (-4073.449) -- 0:09:15
452000 -- (-4084.955) (-4076.303) [-4072.651] (-4092.766) * (-4069.177) (-4085.027) (-4086.529) [-4074.084] -- 0:09:14
453000 -- (-4094.263) (-4072.641) (-4089.687) [-4081.308] * (-4074.725) (-4093.448) [-4078.632] (-4076.241) -- 0:09:13
454000 -- [-4084.835] (-4072.937) (-4086.387) (-4074.752) * (-4087.370) [-4084.202] (-4089.163) (-4075.565) -- 0:09:13
455000 -- (-4086.550) (-4072.302) [-4074.660] (-4082.714) * (-4074.527) (-4082.744) [-4082.381] (-4092.667) -- 0:09:12
Average standard deviation of split frequencies: 0.011728
456000 -- (-4084.594) (-4092.315) (-4090.710) [-4081.565] * (-4107.702) [-4077.044] (-4080.563) (-4091.524) -- 0:09:09
457000 -- (-4079.790) (-4081.889) (-4094.559) [-4073.811] * (-4087.885) [-4081.174] (-4087.652) (-4097.386) -- 0:09:10
458000 -- (-4089.547) (-4079.739) [-4077.637] (-4076.976) * (-4073.130) [-4069.843] (-4079.383) (-4073.538) -- 0:09:07
459000 -- (-4090.674) [-4072.700] (-4085.818) (-4100.298) * (-4078.768) (-4083.958) (-4092.361) [-4076.196] -- 0:09:08
460000 -- [-4071.123] (-4089.605) (-4099.931) (-4081.814) * [-4073.117] (-4095.416) (-4086.802) (-4074.709) -- 0:09:07
Average standard deviation of split frequencies: 0.011239
461000 -- [-4075.582] (-4082.971) (-4088.905) (-4096.264) * (-4073.724) (-4089.809) (-4085.981) [-4067.486] -- 0:09:06
462000 -- (-4087.625) (-4083.958) (-4096.032) [-4080.814] * [-4078.859] (-4061.805) (-4080.992) (-4069.152) -- 0:09:03
463000 -- (-4091.850) (-4078.920) (-4084.178) [-4069.881] * (-4085.283) [-4077.104] (-4094.081) (-4089.116) -- 0:09:02
464000 -- [-4076.062] (-4108.044) (-4089.078) (-4088.008) * (-4101.261) [-4080.086] (-4093.515) (-4068.624) -- 0:09:01
465000 -- [-4073.944] (-4083.114) (-4081.065) (-4086.983) * (-4082.583) [-4079.969] (-4092.542) (-4081.587) -- 0:09:00
Average standard deviation of split frequencies: 0.011145
466000 -- [-4074.901] (-4086.146) (-4096.074) (-4086.885) * (-4077.807) (-4075.160) [-4080.395] (-4088.081) -- 0:08:59
467000 -- (-4091.371) [-4073.523] (-4083.532) (-4081.467) * (-4076.121) (-4092.222) (-4090.047) [-4090.641] -- 0:08:58
468000 -- (-4094.801) (-4087.740) [-4071.077] (-4087.634) * (-4082.168) (-4092.031) [-4072.906] (-4072.208) -- 0:08:57
469000 -- [-4085.720] (-4091.996) (-4102.894) (-4077.413) * (-4087.809) (-4081.733) (-4075.538) [-4082.407] -- 0:08:56
470000 -- (-4085.133) (-4088.947) (-4090.106) [-4074.890] * [-4068.855] (-4077.824) (-4089.719) (-4082.673) -- 0:08:55
Average standard deviation of split frequencies: 0.011439
471000 -- (-4087.238) [-4094.846] (-4079.200) (-4075.670) * [-4078.719] (-4083.503) (-4077.839) (-4087.111) -- 0:08:54
472000 -- (-4091.515) (-4101.423) [-4074.430] (-4071.462) * (-4092.905) (-4074.629) [-4078.509] (-4078.184) -- 0:08:53
473000 -- [-4080.043] (-4091.188) (-4073.378) (-4076.145) * (-4092.253) [-4062.651] (-4091.564) (-4092.446) -- 0:08:52
474000 -- (-4089.463) (-4087.819) [-4076.241] (-4096.161) * (-4087.959) (-4083.513) [-4079.366] (-4083.342) -- 0:08:51
475000 -- (-4094.885) (-4074.078) (-4084.913) [-4067.148] * (-4088.867) (-4085.110) [-4067.836] (-4088.583) -- 0:08:50
Average standard deviation of split frequencies: 0.011287
476000 -- [-4067.543] (-4074.465) (-4099.008) (-4084.198) * (-4083.319) [-4073.724] (-4074.224) (-4093.037) -- 0:08:49
477000 -- (-4082.783) [-4079.801] (-4081.589) (-4093.548) * (-4069.633) (-4077.270) (-4087.859) [-4077.595] -- 0:08:48
478000 -- [-4079.473] (-4080.304) (-4079.065) (-4112.811) * (-4080.091) (-4090.758) (-4084.350) [-4078.996] -- 0:08:47
479000 -- (-4077.834) (-4081.496) (-4080.458) [-4089.594] * (-4074.491) (-4100.854) [-4079.721] (-4083.280) -- 0:08:46
480000 -- [-4080.314] (-4080.937) (-4088.767) (-4068.200) * (-4087.439) [-4086.312] (-4079.994) (-4082.801) -- 0:08:45
Average standard deviation of split frequencies: 0.011295
481000 -- [-4081.211] (-4084.596) (-4073.723) (-4081.960) * [-4085.784] (-4100.324) (-4079.724) (-4071.119) -- 0:08:44
482000 -- (-4089.234) [-4067.358] (-4088.272) (-4088.807) * (-4103.071) (-4075.661) [-4070.710] (-4085.999) -- 0:08:43
483000 -- (-4075.451) (-4076.565) [-4080.764] (-4100.918) * (-4085.025) [-4067.346] (-4079.435) (-4075.353) -- 0:08:42
484000 -- (-4080.176) (-4077.300) [-4082.075] (-4087.861) * (-4067.871) (-4094.388) [-4084.678] (-4096.943) -- 0:08:41
485000 -- [-4072.896] (-4081.268) (-4096.240) (-4102.662) * (-4071.363) (-4077.458) [-4069.407] (-4097.003) -- 0:08:40
Average standard deviation of split frequencies: 0.011163
486000 -- (-4076.896) (-4081.467) [-4069.638] (-4084.935) * (-4081.987) (-4085.442) (-4092.202) [-4082.768] -- 0:08:39
487000 -- [-4075.768] (-4083.432) (-4077.147) (-4087.582) * [-4075.081] (-4088.738) (-4090.148) (-4069.939) -- 0:08:38
488000 -- [-4087.682] (-4084.363) (-4076.837) (-4087.029) * (-4080.095) (-4097.707) [-4071.708] (-4086.488) -- 0:08:37
489000 -- (-4089.005) (-4092.538) (-4080.758) [-4080.553] * [-4073.888] (-4112.831) (-4094.011) (-4076.265) -- 0:08:36
490000 -- [-4070.208] (-4084.196) (-4078.845) (-4092.029) * [-4072.077] (-4086.924) (-4078.374) (-4089.005) -- 0:08:35
Average standard deviation of split frequencies: 0.011314
491000 -- (-4083.690) [-4077.635] (-4073.283) (-4074.866) * (-4082.058) [-4077.183] (-4080.309) (-4087.527) -- 0:08:34
492000 -- [-4071.570] (-4085.387) (-4080.640) (-4083.701) * (-4084.680) (-4069.282) [-4082.271] (-4081.411) -- 0:08:33
493000 -- [-4076.864] (-4084.990) (-4087.563) (-4078.065) * (-4079.557) (-4084.644) [-4082.651] (-4079.459) -- 0:08:32
494000 -- (-4090.978) (-4082.326) [-4068.518] (-4073.041) * (-4087.004) [-4078.491] (-4099.755) (-4078.139) -- 0:08:31
495000 -- [-4074.238] (-4090.212) (-4087.789) (-4079.165) * [-4075.501] (-4081.563) (-4085.102) (-4095.345) -- 0:08:30
Average standard deviation of split frequencies: 0.011782
496000 -- (-4101.036) [-4072.592] (-4098.411) (-4082.297) * [-4073.475] (-4083.573) (-4080.864) (-4080.330) -- 0:08:29
497000 -- [-4076.322] (-4081.031) (-4078.704) (-4087.812) * (-4082.816) (-4091.254) (-4087.379) [-4092.609] -- 0:08:28
498000 -- (-4074.030) [-4087.856] (-4081.372) (-4078.322) * (-4081.734) [-4084.973] (-4080.110) (-4072.236) -- 0:08:27
499000 -- (-4077.506) (-4088.688) [-4072.684] (-4093.343) * (-4074.615) [-4082.258] (-4070.778) (-4087.346) -- 0:08:26
500000 -- (-4089.350) (-4076.475) [-4079.720] (-4085.708) * (-4095.099) (-4094.571) [-4067.396] (-4088.979) -- 0:08:25
Average standard deviation of split frequencies: 0.012240
501000 -- (-4079.080) [-4075.726] (-4087.138) (-4079.625) * (-4084.033) (-4082.123) [-4084.895] (-4084.900) -- 0:08:23
502000 -- (-4082.023) (-4076.763) [-4089.048] (-4096.323) * (-4082.990) (-4091.349) [-4075.920] (-4085.274) -- 0:08:22
503000 -- (-4083.174) [-4073.868] (-4084.243) (-4088.856) * (-4089.332) (-4089.128) (-4078.011) [-4072.031] -- 0:08:21
504000 -- (-4090.671) (-4079.185) [-4071.145] (-4085.605) * [-4079.482] (-4083.074) (-4082.409) (-4090.246) -- 0:08:20
505000 -- (-4088.624) (-4073.982) (-4074.027) [-4081.506] * [-4084.799] (-4091.483) (-4085.161) (-4087.343) -- 0:08:19
Average standard deviation of split frequencies: 0.011480
506000 -- (-4079.155) (-4081.619) [-4069.354] (-4089.240) * [-4073.831] (-4084.160) (-4083.423) (-4094.483) -- 0:08:18
507000 -- (-4089.864) [-4085.482] (-4090.822) (-4081.870) * (-4084.997) (-4088.316) (-4072.487) [-4080.754] -- 0:08:17
508000 -- (-4086.836) (-4078.719) [-4079.683] (-4082.659) * (-4089.323) (-4098.714) [-4081.675] (-4090.930) -- 0:08:16
509000 -- (-4082.582) (-4091.499) [-4073.800] (-4091.268) * (-4103.939) (-4079.571) (-4084.064) [-4081.569] -- 0:08:15
510000 -- [-4082.345] (-4116.923) (-4088.664) (-4077.212) * (-4100.740) (-4084.111) (-4078.499) [-4081.646] -- 0:08:14
Average standard deviation of split frequencies: 0.011682
511000 -- (-4091.786) (-4096.863) (-4073.019) [-4086.260] * (-4078.210) (-4080.116) [-4078.092] (-4100.476) -- 0:08:13
512000 -- [-4088.048] (-4075.035) (-4085.413) (-4094.973) * [-4071.449] (-4071.512) (-4076.288) (-4086.493) -- 0:08:12
513000 -- (-4085.643) [-4081.052] (-4084.009) (-4085.705) * (-4076.220) (-4080.739) (-4093.063) [-4077.170] -- 0:08:11
514000 -- (-4083.141) (-4081.533) (-4089.339) [-4075.318] * [-4086.489] (-4088.729) (-4080.419) (-4080.180) -- 0:08:10
515000 -- [-4090.854] (-4093.341) (-4100.108) (-4079.879) * (-4071.000) (-4094.652) [-4075.988] (-4079.797) -- 0:08:09
Average standard deviation of split frequencies: 0.011435
516000 -- (-4091.949) [-4073.055] (-4092.918) (-4079.083) * [-4067.806] (-4082.841) (-4083.703) (-4082.339) -- 0:08:08
517000 -- [-4079.878] (-4076.934) (-4083.167) (-4105.350) * (-4093.800) (-4083.907) [-4070.164] (-4075.953) -- 0:08:07
518000 -- (-4095.972) (-4110.202) [-4078.403] (-4077.955) * (-4080.636) [-4080.129] (-4079.579) (-4076.897) -- 0:08:06
519000 -- (-4087.632) (-4079.066) (-4066.671) [-4076.243] * (-4085.414) (-4093.157) [-4072.394] (-4087.536) -- 0:08:05
520000 -- (-4086.310) (-4089.301) [-4074.590] (-4090.975) * (-4092.195) [-4073.693] (-4079.501) (-4085.768) -- 0:08:05
Average standard deviation of split frequencies: 0.011380
521000 -- (-4079.496) [-4080.088] (-4092.204) (-4071.931) * (-4095.426) [-4077.626] (-4078.577) (-4100.656) -- 0:08:04
522000 -- (-4096.768) [-4087.628] (-4085.402) (-4085.339) * (-4086.422) [-4078.214] (-4075.769) (-4084.625) -- 0:08:03
523000 -- (-4088.658) [-4084.969] (-4088.340) (-4093.145) * (-4090.926) (-4092.913) [-4073.227] (-4074.856) -- 0:08:02
524000 -- [-4079.049] (-4101.107) (-4095.638) (-4079.435) * (-4091.452) (-4092.715) (-4075.772) [-4072.070] -- 0:08:01
525000 -- (-4082.201) (-4097.103) [-4070.085] (-4082.597) * (-4095.001) (-4084.853) [-4075.437] (-4078.057) -- 0:08:00
Average standard deviation of split frequencies: 0.011326
526000 -- (-4100.150) (-4083.563) (-4072.974) [-4072.804] * (-4081.199) (-4107.989) [-4067.148] (-4066.660) -- 0:07:59
527000 -- (-4082.379) [-4066.845] (-4090.238) (-4083.638) * (-4077.697) (-4096.058) (-4092.246) [-4073.620] -- 0:07:58
528000 -- (-4082.520) [-4081.606] (-4089.837) (-4081.518) * (-4095.858) [-4071.685] (-4102.450) (-4082.154) -- 0:07:57
529000 -- (-4079.304) (-4075.983) [-4086.420] (-4103.428) * (-4105.620) [-4077.841] (-4081.036) (-4096.356) -- 0:07:56
530000 -- (-4073.896) (-4084.317) [-4080.057] (-4100.036) * [-4067.177] (-4077.339) (-4090.331) (-4085.056) -- 0:07:55
Average standard deviation of split frequencies: 0.011472
531000 -- [-4078.651] (-4083.423) (-4090.114) (-4095.712) * [-4072.854] (-4096.633) (-4081.192) (-4086.690) -- 0:07:54
532000 -- [-4082.636] (-4095.455) (-4095.837) (-4091.816) * (-4084.311) [-4077.789] (-4071.872) (-4071.680) -- 0:07:53
533000 -- (-4085.015) [-4080.472] (-4076.992) (-4086.965) * (-4092.644) (-4087.810) [-4071.315] (-4092.674) -- 0:07:52
534000 -- (-4094.252) [-4079.494] (-4081.508) (-4076.699) * (-4076.965) [-4078.484] (-4077.377) (-4082.252) -- 0:07:51
535000 -- (-4084.732) [-4078.470] (-4079.514) (-4102.910) * (-4091.591) (-4081.482) (-4073.622) [-4067.349] -- 0:07:50
Average standard deviation of split frequencies: 0.011449
536000 -- (-4077.412) [-4074.485] (-4077.547) (-4100.750) * (-4084.384) [-4064.537] (-4088.590) (-4088.051) -- 0:07:48
537000 -- (-4076.606) (-4093.209) [-4079.538] (-4094.343) * (-4090.028) (-4084.966) [-4083.551] (-4084.351) -- 0:07:48
538000 -- (-4077.929) (-4095.023) [-4073.244] (-4077.924) * (-4087.642) (-4076.856) (-4080.350) [-4083.986] -- 0:07:47
539000 -- [-4066.264] (-4085.412) (-4077.841) (-4081.619) * (-4080.868) [-4080.298] (-4085.718) (-4097.914) -- 0:07:45
540000 -- (-4079.677) [-4082.458] (-4090.841) (-4081.353) * (-4072.069) [-4081.029] (-4068.888) (-4085.896) -- 0:07:44
Average standard deviation of split frequencies: 0.011166
541000 -- (-4087.525) (-4086.958) (-4087.767) [-4070.079] * [-4075.178] (-4088.396) (-4084.389) (-4097.691) -- 0:07:44
542000 -- (-4079.704) [-4078.363] (-4070.454) (-4079.155) * (-4091.254) [-4060.039] (-4084.338) (-4091.446) -- 0:07:43
543000 -- (-4085.932) (-4083.947) [-4067.016] (-4079.179) * (-4087.557) (-4066.819) (-4082.639) [-4089.937] -- 0:07:42
544000 -- (-4088.992) (-4087.088) (-4080.318) [-4069.005] * (-4086.760) (-4070.619) [-4074.075] (-4096.153) -- 0:07:40
545000 -- [-4079.282] (-4084.328) (-4074.294) (-4088.251) * (-4080.323) [-4083.027] (-4070.745) (-4096.721) -- 0:07:39
Average standard deviation of split frequencies: 0.010554
546000 -- (-4091.228) (-4073.230) [-4080.642] (-4081.859) * (-4078.879) [-4081.490] (-4075.606) (-4090.808) -- 0:07:38
547000 -- (-4084.681) (-4079.313) [-4078.669] (-4104.232) * (-4085.403) (-4065.827) (-4091.398) [-4071.930] -- 0:07:37
548000 -- [-4070.287] (-4092.911) (-4089.803) (-4092.090) * (-4085.279) (-4084.743) [-4096.883] (-4087.061) -- 0:07:36
549000 -- (-4073.338) (-4088.505) [-4087.496] (-4108.572) * (-4075.716) (-4092.188) (-4084.459) [-4085.884] -- 0:07:35
550000 -- (-4079.979) (-4081.036) [-4072.625] (-4085.881) * [-4086.425] (-4087.844) (-4065.797) (-4084.080) -- 0:07:34
Average standard deviation of split frequencies: 0.010618
551000 -- (-4084.686) (-4084.742) (-4077.986) [-4075.175] * (-4097.675) (-4097.127) (-4074.124) [-4073.963] -- 0:07:33
552000 -- (-4091.393) (-4075.687) (-4074.580) [-4079.837] * (-4076.571) (-4103.453) (-4087.555) [-4080.791] -- 0:07:32
553000 -- (-4081.581) (-4084.180) [-4067.161] (-4096.763) * (-4098.873) (-4078.773) (-4077.309) [-4070.509] -- 0:07:31
554000 -- (-4071.515) (-4094.974) (-4095.961) [-4069.415] * (-4105.034) (-4086.923) [-4072.967] (-4071.695) -- 0:07:30
555000 -- (-4075.104) (-4086.953) (-4093.738) [-4089.286] * [-4088.076] (-4079.619) (-4076.114) (-4082.075) -- 0:07:29
Average standard deviation of split frequencies: 0.010353
556000 -- (-4102.895) [-4081.598] (-4083.862) (-4079.885) * (-4085.672) (-4088.095) (-4088.590) [-4069.798] -- 0:07:27
557000 -- (-4098.693) [-4065.643] (-4082.717) (-4072.065) * (-4086.115) [-4070.009] (-4086.421) (-4076.891) -- 0:07:26
558000 -- (-4095.008) (-4075.421) [-4071.603] (-4077.853) * (-4098.629) (-4073.787) (-4091.126) [-4078.151] -- 0:07:25
559000 -- (-4095.250) (-4088.286) [-4077.091] (-4069.520) * (-4085.907) [-4076.724] (-4076.686) (-4073.432) -- 0:07:24
560000 -- (-4082.767) (-4082.210) [-4066.304] (-4095.931) * (-4072.130) [-4084.245] (-4080.116) (-4093.553) -- 0:07:23
Average standard deviation of split frequencies: 0.010134
561000 -- (-4083.119) [-4069.421] (-4093.424) (-4081.655) * [-4079.430] (-4081.728) (-4088.036) (-4070.052) -- 0:07:22
562000 -- [-4078.352] (-4091.465) (-4088.276) (-4082.908) * (-4091.709) (-4099.706) [-4073.702] (-4070.996) -- 0:07:21
563000 -- (-4070.941) (-4080.201) (-4091.520) [-4087.993] * [-4078.928] (-4078.589) (-4081.796) (-4071.746) -- 0:07:20
564000 -- (-4085.090) (-4082.292) [-4080.294] (-4090.474) * (-4081.608) [-4074.811] (-4082.982) (-4092.101) -- 0:07:19
565000 -- (-4097.507) (-4083.283) [-4074.072] (-4093.151) * (-4086.868) (-4090.959) [-4080.885] (-4096.651) -- 0:07:18
Average standard deviation of split frequencies: 0.010152
566000 -- (-4087.332) [-4083.902] (-4108.837) (-4090.740) * (-4097.241) (-4082.249) [-4079.522] (-4088.722) -- 0:07:17
567000 -- [-4085.385] (-4084.868) (-4086.180) (-4079.703) * [-4090.207] (-4093.294) (-4087.476) (-4090.316) -- 0:07:16
568000 -- (-4079.082) (-4102.508) [-4079.098] (-4082.882) * (-4077.013) (-4087.937) [-4076.074] (-4087.593) -- 0:07:15
569000 -- (-4089.308) [-4077.553] (-4096.178) (-4087.246) * (-4103.720) (-4089.251) (-4071.447) [-4082.510] -- 0:07:14
570000 -- (-4099.957) (-4081.068) [-4080.181] (-4074.819) * (-4090.477) (-4073.401) (-4073.020) [-4076.702] -- 0:07:13
Average standard deviation of split frequencies: 0.009884
571000 -- (-4085.954) (-4080.244) (-4086.981) [-4091.918] * (-4093.627) [-4079.599] (-4079.452) (-4094.064) -- 0:07:12
572000 -- (-4101.134) [-4083.506] (-4076.963) (-4085.318) * (-4090.088) [-4072.546] (-4085.532) (-4080.201) -- 0:07:12
573000 -- (-4083.462) [-4080.619] (-4091.219) (-4081.231) * (-4093.878) [-4076.645] (-4102.557) (-4079.826) -- 0:07:10
574000 -- (-4076.392) [-4075.400] (-4104.858) (-4096.857) * (-4076.512) (-4078.616) (-4085.399) [-4068.653] -- 0:07:10
575000 -- [-4080.999] (-4088.233) (-4099.661) (-4086.954) * (-4098.022) (-4070.053) (-4092.324) [-4069.574] -- 0:07:09
Average standard deviation of split frequencies: 0.009562
576000 -- (-4079.712) (-4094.683) (-4092.709) [-4077.818] * (-4089.543) (-4080.081) (-4082.578) [-4081.049] -- 0:07:08
577000 -- (-4076.993) [-4085.035] (-4079.607) (-4100.609) * (-4097.323) (-4083.132) (-4085.913) [-4075.359] -- 0:07:07
578000 -- (-4091.027) (-4085.624) (-4088.514) [-4081.382] * (-4096.828) (-4076.065) (-4090.448) [-4068.618] -- 0:07:06
579000 -- (-4088.129) (-4106.854) [-4073.160] (-4076.408) * (-4077.083) [-4068.666] (-4089.001) (-4077.963) -- 0:07:05
580000 -- (-4104.435) (-4093.850) (-4085.637) [-4080.031] * (-4081.781) (-4081.563) [-4074.829] (-4098.374) -- 0:07:04
Average standard deviation of split frequencies: 0.009003
581000 -- (-4098.031) (-4074.377) (-4093.163) [-4075.693] * (-4084.796) [-4080.433] (-4099.097) (-4075.175) -- 0:07:03
582000 -- (-4084.395) (-4098.775) [-4075.549] (-4092.016) * (-4076.609) (-4081.599) [-4079.533] (-4099.256) -- 0:07:02
583000 -- [-4085.521] (-4093.809) (-4076.258) (-4069.258) * [-4072.183] (-4077.522) (-4083.296) (-4077.495) -- 0:07:01
584000 -- [-4066.372] (-4088.684) (-4092.959) (-4073.313) * (-4087.747) (-4089.947) (-4089.028) [-4079.236] -- 0:07:00
585000 -- (-4088.637) (-4087.357) (-4084.540) [-4083.075] * (-4080.785) (-4084.368) [-4097.088] (-4106.775) -- 0:06:59
Average standard deviation of split frequencies: 0.008581
586000 -- (-4090.792) (-4081.168) (-4079.495) [-4084.799] * (-4083.413) (-4097.072) (-4102.150) [-4068.122] -- 0:06:58
587000 -- (-4087.677) (-4075.490) [-4074.798] (-4080.447) * (-4082.388) (-4075.759) (-4083.644) [-4069.981] -- 0:06:57
588000 -- (-4093.910) (-4071.281) (-4083.194) [-4079.831] * (-4078.303) [-4077.557] (-4099.917) (-4078.356) -- 0:06:56
589000 -- (-4079.637) (-4081.632) [-4084.230] (-4084.023) * (-4072.558) (-4076.924) [-4080.302] (-4098.546) -- 0:06:55
590000 -- (-4106.391) (-4097.503) [-4072.918] (-4093.456) * (-4081.718) (-4076.437) (-4085.140) [-4077.172] -- 0:06:54
Average standard deviation of split frequencies: 0.008779
591000 -- (-4081.164) [-4080.036] (-4093.541) (-4082.674) * (-4091.649) (-4074.046) (-4091.464) [-4082.866] -- 0:06:53
592000 -- (-4072.270) [-4079.402] (-4103.974) (-4087.848) * (-4089.615) [-4071.250] (-4097.800) (-4095.460) -- 0:06:52
593000 -- (-4088.485) [-4084.293] (-4097.027) (-4091.379) * (-4081.736) (-4070.802) [-4080.131] (-4102.983) -- 0:06:51
594000 -- (-4104.272) [-4095.224] (-4080.643) (-4096.165) * (-4078.247) (-4099.847) (-4080.233) [-4072.148] -- 0:06:50
595000 -- (-4085.443) (-4070.594) [-4075.378] (-4084.722) * (-4081.398) (-4108.948) [-4075.304] (-4097.476) -- 0:06:49
Average standard deviation of split frequencies: 0.008969
596000 -- [-4080.435] (-4069.128) (-4114.163) (-4082.914) * (-4089.407) (-4099.769) [-4079.221] (-4084.287) -- 0:06:48
597000 -- (-4092.325) (-4084.530) (-4090.286) [-4076.468] * (-4088.700) (-4095.485) (-4083.901) [-4079.035] -- 0:06:47
598000 -- (-4084.776) [-4090.971] (-4097.798) (-4072.167) * (-4086.547) (-4108.702) (-4096.673) [-4071.726] -- 0:06:46
599000 -- (-4105.817) (-4091.129) (-4091.693) [-4077.979] * [-4075.075] (-4086.199) (-4084.020) (-4066.250) -- 0:06:45
600000 -- (-4096.781) (-4082.568) [-4085.480] (-4080.248) * [-4068.134] (-4091.201) (-4080.712) (-4093.464) -- 0:06:44
Average standard deviation of split frequencies: 0.008918
601000 -- [-4072.579] (-4095.064) (-4084.353) (-4094.587) * [-4077.100] (-4086.936) (-4094.177) (-4090.135) -- 0:06:42
602000 -- (-4089.907) (-4086.173) (-4086.802) [-4085.641] * [-4072.920] (-4085.387) (-4090.937) (-4086.379) -- 0:06:41
603000 -- (-4096.091) (-4076.038) (-4084.287) [-4077.556] * [-4078.516] (-4096.264) (-4088.931) (-4080.420) -- 0:06:40
604000 -- (-4088.488) (-4073.065) [-4081.299] (-4094.994) * (-4079.990) [-4076.416] (-4094.872) (-4082.597) -- 0:06:39
605000 -- (-4079.143) [-4080.848] (-4073.509) (-4099.779) * (-4081.857) (-4083.311) (-4077.212) [-4089.561] -- 0:06:38
Average standard deviation of split frequencies: 0.008682
606000 -- (-4096.867) [-4073.671] (-4081.001) (-4096.946) * (-4083.718) (-4081.735) [-4069.669] (-4082.139) -- 0:06:37
607000 -- (-4097.614) [-4083.613] (-4080.817) (-4093.236) * (-4095.771) (-4065.033) [-4076.338] (-4101.886) -- 0:06:36
608000 -- [-4081.692] (-4091.436) (-4090.691) (-4076.941) * (-4091.611) [-4079.112] (-4084.693) (-4075.742) -- 0:06:35
609000 -- [-4070.054] (-4089.512) (-4082.489) (-4088.641) * (-4075.332) [-4083.379] (-4089.416) (-4088.020) -- 0:06:34
610000 -- (-4093.470) (-4073.013) [-4085.390] (-4078.810) * [-4072.186] (-4093.499) (-4078.005) (-4087.833) -- 0:06:33
Average standard deviation of split frequencies: 0.009011
611000 -- (-4084.870) (-4076.547) [-4069.450] (-4064.072) * (-4087.116) (-4081.767) (-4070.819) [-4076.782] -- 0:06:32
612000 -- [-4087.402] (-4090.540) (-4075.130) (-4084.722) * (-4091.787) (-4085.300) [-4069.799] (-4076.539) -- 0:06:31
613000 -- (-4085.901) [-4079.737] (-4080.668) (-4086.493) * [-4077.933] (-4091.409) (-4090.267) (-4070.318) -- 0:06:30
614000 -- (-4090.144) (-4074.450) (-4087.788) [-4072.895] * (-4076.738) (-4113.678) [-4068.661] (-4077.625) -- 0:06:29
615000 -- [-4074.968] (-4085.831) (-4078.885) (-4102.178) * (-4071.605) (-4090.864) [-4076.241] (-4083.696) -- 0:06:28
Average standard deviation of split frequencies: 0.008933
616000 -- (-4075.425) [-4079.671] (-4083.875) (-4082.975) * (-4079.365) (-4093.930) [-4081.358] (-4086.782) -- 0:06:27
617000 -- (-4075.993) (-4085.234) [-4090.488] (-4099.397) * [-4086.427] (-4083.157) (-4090.655) (-4074.286) -- 0:06:26
618000 -- (-4089.002) [-4070.022] (-4086.216) (-4082.404) * (-4084.580) [-4079.061] (-4083.883) (-4085.836) -- 0:06:25
619000 -- (-4088.187) (-4080.523) (-4088.745) [-4073.613] * (-4090.401) (-4080.123) (-4077.769) [-4082.914] -- 0:06:24
620000 -- (-4095.931) (-4083.825) (-4080.263) [-4076.244] * (-4089.751) (-4073.513) (-4087.086) [-4083.501] -- 0:06:23
Average standard deviation of split frequencies: 0.008645
621000 -- (-4074.631) [-4086.572] (-4079.378) (-4079.845) * (-4077.146) (-4076.141) (-4094.715) [-4077.930] -- 0:06:22
622000 -- (-4079.988) (-4086.246) [-4080.665] (-4078.311) * (-4083.978) [-4073.754] (-4083.812) (-4089.099) -- 0:06:21
623000 -- (-4085.654) (-4089.319) (-4082.578) [-4079.406] * (-4096.231) [-4084.782] (-4091.216) (-4071.716) -- 0:06:20
624000 -- (-4084.278) (-4085.315) [-4075.978] (-4073.397) * (-4077.057) (-4084.406) [-4081.867] (-4076.972) -- 0:06:19
625000 -- (-4087.185) (-4075.335) [-4077.871] (-4089.345) * [-4084.877] (-4082.661) (-4088.309) (-4087.075) -- 0:06:18
Average standard deviation of split frequencies: 0.008708
626000 -- (-4074.192) (-4093.508) [-4083.277] (-4091.173) * (-4104.500) (-4082.634) [-4081.974] (-4087.800) -- 0:06:17
627000 -- [-4078.364] (-4078.234) (-4082.973) (-4088.618) * [-4083.709] (-4091.391) (-4086.243) (-4082.372) -- 0:06:15
628000 -- (-4088.871) [-4076.043] (-4088.115) (-4074.067) * (-4083.089) [-4062.126] (-4091.149) (-4097.905) -- 0:06:14
629000 -- (-4086.122) [-4066.046] (-4090.865) (-4093.430) * [-4067.282] (-4082.763) (-4118.235) (-4096.728) -- 0:06:13
630000 -- [-4074.769] (-4086.367) (-4091.837) (-4083.970) * (-4086.407) (-4081.420) (-4091.288) [-4086.993] -- 0:06:12
Average standard deviation of split frequencies: 0.008494
631000 -- (-4109.553) (-4078.246) (-4080.986) [-4071.745] * (-4076.899) (-4103.709) (-4081.873) [-4073.200] -- 0:06:11
632000 -- (-4081.137) (-4078.747) (-4093.878) [-4072.536] * (-4078.677) [-4077.113] (-4093.711) (-4072.031) -- 0:06:10
633000 -- [-4078.264] (-4089.756) (-4084.422) (-4085.278) * (-4095.252) (-4082.252) (-4079.520) [-4067.452] -- 0:06:09
634000 -- [-4075.273] (-4074.305) (-4098.296) (-4076.014) * (-4082.503) (-4083.916) [-4072.978] (-4073.799) -- 0:06:08
635000 -- [-4075.087] (-4082.177) (-4087.623) (-4092.833) * (-4076.607) [-4074.892] (-4087.056) (-4085.801) -- 0:06:07
Average standard deviation of split frequencies: 0.008764
636000 -- (-4091.478) (-4076.902) [-4078.795] (-4087.185) * (-4071.802) [-4073.473] (-4097.298) (-4097.885) -- 0:06:06
637000 -- (-4104.541) (-4077.960) (-4101.728) [-4076.707] * (-4080.463) (-4079.115) [-4072.988] (-4085.474) -- 0:06:05
638000 -- [-4077.729] (-4085.431) (-4082.454) (-4096.376) * (-4083.006) (-4072.781) (-4081.175) [-4082.936] -- 0:06:04
639000 -- (-4089.405) [-4080.222] (-4082.602) (-4082.759) * (-4101.107) [-4074.855] (-4081.998) (-4075.700) -- 0:06:04
640000 -- (-4098.257) (-4079.077) (-4077.982) [-4082.215] * (-4081.839) (-4095.197) (-4078.404) [-4070.205] -- 0:06:02
Average standard deviation of split frequencies: 0.008869
641000 -- (-4077.659) [-4074.727] (-4078.986) (-4098.285) * (-4081.670) (-4091.585) [-4078.465] (-4079.382) -- 0:06:01
642000 -- [-4079.281] (-4087.359) (-4098.623) (-4094.643) * (-4084.861) (-4094.355) (-4091.771) [-4077.013] -- 0:06:00
643000 -- (-4073.353) [-4080.920] (-4087.682) (-4082.068) * (-4081.885) [-4080.868] (-4083.111) (-4080.740) -- 0:05:59
644000 -- (-4077.524) (-4091.267) [-4071.038] (-4090.008) * (-4094.961) (-4081.826) [-4094.939] (-4096.193) -- 0:05:58
645000 -- (-4079.274) (-4096.892) [-4073.370] (-4085.815) * (-4091.782) (-4082.722) (-4081.377) [-4075.363] -- 0:05:57
Average standard deviation of split frequencies: 0.008757
646000 -- (-4072.953) [-4081.897] (-4105.019) (-4077.372) * (-4082.656) (-4090.097) [-4085.727] (-4068.471) -- 0:05:56
647000 -- (-4078.270) (-4089.929) (-4085.482) [-4076.573] * [-4078.796] (-4074.626) (-4076.666) (-4079.435) -- 0:05:55
648000 -- (-4075.584) (-4090.487) (-4076.217) [-4079.703] * (-4097.476) [-4076.035] (-4082.044) (-4091.218) -- 0:05:54
649000 -- (-4093.243) [-4077.462] (-4076.521) (-4082.726) * (-4098.964) (-4077.509) [-4086.339] (-4090.391) -- 0:05:53
650000 -- (-4076.549) (-4076.278) [-4076.419] (-4075.525) * (-4093.692) (-4080.755) (-4087.861) [-4077.425] -- 0:05:52
Average standard deviation of split frequencies: 0.008810
651000 -- (-4090.831) (-4070.719) [-4072.974] (-4089.862) * (-4085.071) (-4090.072) [-4073.029] (-4076.010) -- 0:05:51
652000 -- [-4082.937] (-4079.273) (-4084.558) (-4080.288) * (-4106.079) [-4069.594] (-4094.349) (-4083.682) -- 0:05:50
653000 -- [-4081.685] (-4087.085) (-4085.758) (-4091.784) * (-4080.833) [-4085.936] (-4086.120) (-4092.411) -- 0:05:49
654000 -- (-4078.561) [-4079.278] (-4082.591) (-4100.411) * [-4083.026] (-4082.926) (-4095.930) (-4100.543) -- 0:05:48
655000 -- (-4078.605) (-4069.771) [-4075.733] (-4092.454) * (-4088.349) [-4069.323] (-4087.353) (-4097.358) -- 0:05:47
Average standard deviation of split frequencies: 0.009021
656000 -- (-4086.289) (-4085.131) [-4083.881] (-4095.325) * (-4089.850) (-4080.026) [-4074.053] (-4075.158) -- 0:05:46
657000 -- (-4071.028) (-4081.355) [-4085.920] (-4088.695) * (-4097.628) (-4086.198) [-4075.304] (-4078.504) -- 0:05:45
658000 -- [-4097.046] (-4076.222) (-4089.730) (-4077.317) * (-4095.379) (-4086.562) (-4077.040) [-4075.282] -- 0:05:44
659000 -- (-4078.351) [-4092.664] (-4107.018) (-4087.484) * (-4091.072) (-4079.341) [-4077.009] (-4102.638) -- 0:05:43
660000 -- (-4076.084) [-4077.099] (-4091.379) (-4089.249) * (-4097.962) (-4077.409) [-4071.112] (-4107.616) -- 0:05:42
Average standard deviation of split frequencies: 0.008420
661000 -- (-4072.996) (-4084.153) [-4074.346] (-4081.601) * (-4078.810) (-4079.151) [-4072.839] (-4076.443) -- 0:05:41
662000 -- [-4081.741] (-4075.252) (-4085.188) (-4075.186) * (-4073.922) [-4079.855] (-4086.064) (-4095.974) -- 0:05:40
663000 -- [-4081.036] (-4074.088) (-4094.467) (-4071.391) * [-4068.318] (-4104.714) (-4085.455) (-4086.223) -- 0:05:39
664000 -- [-4078.947] (-4082.555) (-4088.969) (-4070.212) * (-4085.654) (-4081.924) (-4077.241) [-4088.180] -- 0:05:38
665000 -- (-4084.397) [-4080.835] (-4086.189) (-4094.872) * (-4093.413) (-4073.591) [-4068.446] (-4081.092) -- 0:05:37
Average standard deviation of split frequencies: 0.008301
666000 -- (-4075.329) (-4094.295) (-4095.722) [-4081.073] * (-4112.367) [-4080.857] (-4088.020) (-4077.801) -- 0:05:36
667000 -- (-4088.938) (-4092.619) (-4084.686) [-4073.653] * (-4099.583) (-4100.334) (-4080.831) [-4082.252] -- 0:05:35
668000 -- (-4112.655) (-4074.066) [-4085.137] (-4083.734) * [-4083.095] (-4092.505) (-4082.693) (-4080.660) -- 0:05:34
669000 -- [-4069.167] (-4081.161) (-4090.334) (-4080.529) * (-4085.426) (-4066.501) (-4083.152) [-4081.564] -- 0:05:33
670000 -- (-4085.635) [-4077.503] (-4076.245) (-4084.384) * [-4072.983] (-4075.778) (-4094.766) (-4109.875) -- 0:05:32
Average standard deviation of split frequencies: 0.008473
671000 -- [-4071.708] (-4075.762) (-4080.166) (-4073.930) * (-4070.681) (-4079.995) [-4065.446] (-4089.544) -- 0:05:31
672000 -- (-4082.275) (-4099.152) [-4075.807] (-4074.134) * (-4069.941) (-4101.241) (-4075.015) [-4085.543] -- 0:05:30
673000 -- (-4099.209) [-4085.553] (-4073.347) (-4082.497) * (-4077.446) (-4083.150) [-4071.433] (-4083.331) -- 0:05:29
674000 -- (-4084.738) [-4093.347] (-4090.757) (-4084.480) * (-4089.275) (-4094.649) [-4077.695] (-4086.650) -- 0:05:28
675000 -- (-4089.757) [-4079.596] (-4082.110) (-4089.762) * (-4085.245) (-4093.373) (-4085.516) [-4083.578] -- 0:05:27
Average standard deviation of split frequencies: 0.008279
676000 -- [-4060.404] (-4087.593) (-4085.347) (-4082.400) * (-4080.090) [-4068.866] (-4099.837) (-4087.342) -- 0:05:26
677000 -- (-4083.302) [-4075.063] (-4097.406) (-4087.893) * (-4065.341) [-4079.934] (-4079.674) (-4086.496) -- 0:05:25
678000 -- (-4093.202) (-4094.869) [-4074.342] (-4092.988) * (-4068.236) (-4091.359) (-4081.914) [-4072.394] -- 0:05:24
679000 -- (-4082.983) (-4073.637) [-4068.125] (-4089.197) * (-4088.702) (-4084.838) (-4101.311) [-4066.843] -- 0:05:23
680000 -- (-4091.160) (-4077.777) [-4076.400] (-4079.432) * [-4077.249] (-4090.541) (-4072.274) (-4082.515) -- 0:05:22
Average standard deviation of split frequencies: 0.008323
681000 -- [-4076.935] (-4080.850) (-4082.120) (-4087.737) * [-4081.677] (-4083.893) (-4083.242) (-4089.480) -- 0:05:21
682000 -- (-4079.080) (-4091.326) (-4082.012) [-4082.844] * [-4071.234] (-4091.703) (-4077.741) (-4083.061) -- 0:05:20
683000 -- (-4088.213) [-4084.385] (-4073.162) (-4088.068) * [-4078.912] (-4087.209) (-4092.631) (-4095.567) -- 0:05:19
684000 -- (-4096.825) (-4097.228) (-4075.856) [-4076.082] * (-4090.203) (-4098.837) (-4080.440) [-4075.441] -- 0:05:18
685000 -- (-4080.322) [-4078.283] (-4088.640) (-4071.881) * (-4072.960) (-4082.933) (-4089.297) [-4080.885] -- 0:05:17
Average standard deviation of split frequencies: 0.008150
686000 -- (-4085.194) (-4092.084) (-4082.981) [-4078.739] * [-4090.952] (-4079.887) (-4089.528) (-4075.765) -- 0:05:16
687000 -- (-4075.859) [-4069.060] (-4092.568) (-4127.715) * [-4078.892] (-4089.626) (-4078.672) (-4091.730) -- 0:05:15
688000 -- [-4074.680] (-4081.659) (-4078.354) (-4101.158) * (-4100.163) (-4072.896) [-4081.754] (-4102.791) -- 0:05:14
689000 -- [-4078.499] (-4102.307) (-4079.466) (-4113.152) * (-4094.324) (-4088.137) (-4076.524) [-4074.554] -- 0:05:13
690000 -- [-4080.798] (-4099.832) (-4083.179) (-4077.286) * (-4083.329) [-4075.062] (-4078.881) (-4076.587) -- 0:05:12
Average standard deviation of split frequencies: 0.008014
691000 -- [-4069.636] (-4095.690) (-4074.776) (-4084.955) * (-4105.898) (-4082.111) [-4080.905] (-4099.641) -- 0:05:11
692000 -- (-4093.179) (-4082.002) (-4099.781) [-4080.531] * (-4074.220) (-4088.466) [-4082.620] (-4091.260) -- 0:05:10
693000 -- (-4089.807) (-4077.771) (-4093.632) [-4088.770] * [-4074.634] (-4091.106) (-4073.160) (-4077.124) -- 0:05:09
694000 -- (-4097.942) [-4079.273] (-4109.599) (-4082.794) * [-4067.571] (-4080.025) (-4090.081) (-4080.826) -- 0:05:08
695000 -- (-4076.218) [-4071.101] (-4082.153) (-4085.736) * (-4083.120) [-4080.007] (-4086.875) (-4073.804) -- 0:05:07
Average standard deviation of split frequencies: 0.007700
696000 -- (-4098.804) (-4076.535) (-4088.913) [-4068.358] * (-4090.033) [-4080.701] (-4090.710) (-4078.380) -- 0:05:06
697000 -- (-4083.029) (-4079.279) (-4094.046) [-4073.650] * (-4085.899) (-4080.745) [-4066.694] (-4077.852) -- 0:05:05
698000 -- (-4066.951) (-4092.345) (-4084.171) [-4073.558] * (-4077.660) [-4072.703] (-4083.287) (-4086.233) -- 0:05:04
699000 -- [-4084.034] (-4080.912) (-4077.838) (-4065.146) * (-4091.216) [-4083.052] (-4082.623) (-4088.321) -- 0:05:03
700000 -- [-4078.038] (-4092.050) (-4079.823) (-4085.126) * (-4074.324) (-4087.644) (-4090.049) [-4075.456] -- 0:05:02
Average standard deviation of split frequencies: 0.007989
701000 -- (-4085.604) (-4072.712) [-4061.441] (-4089.379) * (-4098.159) (-4101.396) [-4075.815] (-4086.141) -- 0:05:01
702000 -- [-4075.916] (-4077.235) (-4079.058) (-4089.856) * [-4071.123] (-4095.844) (-4074.529) (-4084.691) -- 0:05:00
703000 -- [-4078.293] (-4082.959) (-4093.417) (-4084.447) * [-4075.839] (-4085.813) (-4087.116) (-4093.052) -- 0:04:59
704000 -- (-4087.671) (-4072.096) [-4068.061] (-4077.535) * (-4071.320) (-4084.943) [-4076.652] (-4094.242) -- 0:04:58
705000 -- (-4087.892) (-4080.316) [-4089.280] (-4086.795) * (-4075.011) [-4072.474] (-4094.462) (-4090.095) -- 0:04:57
Average standard deviation of split frequencies: 0.008287
706000 -- (-4101.024) (-4080.380) [-4072.206] (-4093.637) * [-4083.514] (-4100.030) (-4080.816) (-4102.047) -- 0:04:56
707000 -- (-4089.974) (-4080.994) [-4079.974] (-4099.815) * [-4077.307] (-4095.468) (-4076.454) (-4089.264) -- 0:04:55
708000 -- (-4083.164) (-4084.293) (-4063.897) [-4087.373] * (-4076.831) [-4088.035] (-4080.828) (-4091.845) -- 0:04:54
709000 -- (-4094.359) (-4089.808) [-4069.001] (-4087.417) * (-4096.294) [-4081.593] (-4078.346) (-4082.164) -- 0:04:53
710000 -- (-4091.328) (-4091.322) [-4070.996] (-4096.036) * (-4093.279) (-4078.602) [-4070.467] (-4083.708) -- 0:04:52
Average standard deviation of split frequencies: 0.007813
711000 -- (-4079.013) (-4089.098) [-4075.988] (-4087.718) * (-4089.504) (-4085.016) (-4089.385) [-4074.456] -- 0:04:51
712000 -- [-4077.301] (-4083.424) (-4081.831) (-4085.688) * (-4074.724) (-4089.913) (-4080.294) [-4066.827] -- 0:04:50
713000 -- (-4085.754) (-4084.369) [-4077.470] (-4085.382) * (-4095.511) (-4090.743) (-4081.469) [-4075.237] -- 0:04:49
714000 -- (-4081.406) (-4088.777) [-4074.999] (-4076.387) * [-4091.396] (-4087.473) (-4081.204) (-4067.960) -- 0:04:48
715000 -- (-4074.039) (-4080.203) [-4076.236] (-4079.753) * (-4079.418) (-4094.759) [-4075.371] (-4089.827) -- 0:04:47
Average standard deviation of split frequencies: 0.007817
716000 -- (-4081.618) (-4082.778) [-4069.185] (-4070.079) * (-4078.055) (-4082.002) [-4074.047] (-4087.991) -- 0:04:46
717000 -- (-4084.689) (-4078.820) [-4067.162] (-4083.489) * (-4086.786) (-4083.526) (-4090.460) [-4081.105] -- 0:04:45
718000 -- [-4067.980] (-4076.105) (-4079.686) (-4082.775) * (-4084.650) [-4084.970] (-4093.654) (-4089.871) -- 0:04:44
719000 -- (-4067.687) (-4081.960) (-4096.203) [-4079.168] * [-4083.595] (-4084.654) (-4091.552) (-4085.314) -- 0:04:43
720000 -- (-4082.256) [-4078.030] (-4114.125) (-4068.464) * (-4085.360) (-4069.221) (-4092.324) [-4072.807] -- 0:04:42
Average standard deviation of split frequencies: 0.007592
721000 -- (-4101.442) (-4081.221) (-4081.958) [-4069.739] * (-4091.044) [-4081.036] (-4095.281) (-4090.688) -- 0:04:41
722000 -- (-4081.175) (-4078.777) (-4084.999) [-4076.358] * [-4083.861] (-4091.683) (-4072.355) (-4091.131) -- 0:04:40
723000 -- (-4074.528) (-4095.419) [-4074.012] (-4096.808) * [-4071.638] (-4089.774) (-4089.072) (-4078.825) -- 0:04:39
724000 -- (-4104.454) (-4079.368) (-4085.465) [-4080.497] * (-4084.304) (-4082.666) [-4067.159] (-4097.340) -- 0:04:38
725000 -- [-4088.558] (-4086.837) (-4072.473) (-4100.794) * (-4077.342) (-4074.554) [-4069.400] (-4096.036) -- 0:04:37
Average standard deviation of split frequencies: 0.007374
726000 -- (-4111.018) (-4098.449) (-4078.353) [-4071.275] * (-4088.361) (-4086.102) (-4082.920) [-4080.162] -- 0:04:36
727000 -- [-4092.278] (-4083.391) (-4083.939) (-4085.458) * (-4101.296) (-4075.910) [-4060.902] (-4098.009) -- 0:04:35
728000 -- (-4085.223) (-4093.011) (-4072.640) [-4073.618] * (-4081.908) (-4094.159) [-4072.866] (-4093.016) -- 0:04:34
729000 -- (-4095.312) (-4096.969) [-4081.798] (-4094.116) * (-4085.963) (-4087.456) (-4087.554) [-4081.761] -- 0:04:33
730000 -- (-4082.553) (-4083.307) (-4075.503) [-4079.020] * (-4080.903) [-4076.717] (-4093.085) (-4100.300) -- 0:04:32
Average standard deviation of split frequencies: 0.007519
731000 -- [-4083.796] (-4087.208) (-4073.155) (-4085.152) * [-4079.936] (-4074.899) (-4094.351) (-4087.116) -- 0:04:31
732000 -- (-4094.170) [-4081.018] (-4082.875) (-4071.842) * (-4089.773) (-4096.112) (-4088.501) [-4082.913] -- 0:04:30
733000 -- [-4075.714] (-4089.219) (-4080.749) (-4074.296) * [-4072.348] (-4102.975) (-4097.566) (-4080.031) -- 0:04:29
734000 -- (-4099.926) [-4076.784] (-4080.870) (-4090.577) * (-4079.924) (-4097.048) [-4069.640] (-4081.917) -- 0:04:28
735000 -- (-4081.376) [-4067.972] (-4081.903) (-4084.717) * (-4076.177) [-4074.436] (-4070.541) (-4083.520) -- 0:04:27
Average standard deviation of split frequencies: 0.007511
736000 -- (-4086.763) (-4090.278) (-4076.751) [-4065.980] * (-4081.369) [-4082.123] (-4091.468) (-4066.672) -- 0:04:26
737000 -- (-4083.223) (-4085.511) [-4074.803] (-4097.845) * [-4071.054] (-4074.098) (-4080.950) (-4079.340) -- 0:04:25
738000 -- (-4089.352) (-4089.946) [-4065.951] (-4085.964) * (-4086.365) (-4082.443) (-4083.733) [-4071.726] -- 0:04:24
739000 -- (-4093.556) (-4090.110) [-4079.533] (-4079.235) * (-4082.165) [-4082.188] (-4087.165) (-4082.447) -- 0:04:23
740000 -- (-4083.241) [-4073.627] (-4085.103) (-4107.432) * [-4080.072] (-4068.251) (-4071.813) (-4079.831) -- 0:04:22
Average standard deviation of split frequencies: 0.007547
741000 -- (-4085.255) (-4071.501) (-4110.066) [-4071.853] * (-4079.373) [-4078.804] (-4082.660) (-4102.051) -- 0:04:21
742000 -- (-4078.887) (-4069.979) (-4084.312) [-4070.466] * [-4079.746] (-4085.537) (-4087.201) (-4090.774) -- 0:04:20
743000 -- [-4083.757] (-4084.892) (-4095.458) (-4080.368) * [-4072.699] (-4095.073) (-4070.450) (-4076.751) -- 0:04:19
744000 -- [-4073.822] (-4095.254) (-4095.416) (-4090.413) * (-4087.554) [-4087.946] (-4096.338) (-4079.696) -- 0:04:18
745000 -- (-4099.340) (-4099.275) (-4069.124) [-4081.958] * (-4076.968) [-4081.912] (-4082.845) (-4094.423) -- 0:04:17
Average standard deviation of split frequencies: 0.007493
746000 -- (-4086.931) (-4101.773) [-4081.035] (-4076.770) * (-4084.792) (-4084.732) (-4103.892) [-4075.775] -- 0:04:16
747000 -- (-4091.613) (-4086.835) (-4072.964) [-4070.153] * (-4090.123) (-4083.831) [-4073.339] (-4083.328) -- 0:04:15
748000 -- (-4097.548) (-4090.015) [-4076.326] (-4101.304) * (-4082.455) [-4068.105] (-4075.927) (-4083.751) -- 0:04:14
749000 -- (-4082.570) (-4094.096) [-4070.467] (-4084.263) * (-4071.385) [-4068.929] (-4089.118) (-4078.824) -- 0:04:13
750000 -- [-4079.149] (-4076.168) (-4068.245) (-4098.349) * (-4096.092) (-4072.392) (-4098.357) [-4067.665] -- 0:04:12
Average standard deviation of split frequencies: 0.007723
751000 -- (-4107.715) (-4073.049) [-4079.474] (-4090.755) * (-4076.476) (-4078.660) [-4082.085] (-4062.130) -- 0:04:10
752000 -- (-4094.027) [-4081.525] (-4092.983) (-4079.290) * [-4077.167] (-4087.066) (-4093.976) (-4065.978) -- 0:04:09
753000 -- (-4081.088) (-4096.063) [-4072.928] (-4100.515) * (-4095.965) [-4085.714] (-4083.346) (-4076.634) -- 0:04:08
754000 -- [-4066.963] (-4093.312) (-4062.751) (-4090.006) * (-4095.366) (-4092.177) (-4103.964) [-4069.231] -- 0:04:07
755000 -- [-4078.274] (-4092.028) (-4086.605) (-4087.801) * (-4091.928) (-4089.837) (-4073.691) [-4070.900] -- 0:04:06
Average standard deviation of split frequencies: 0.007573
756000 -- (-4079.738) [-4070.910] (-4074.341) (-4069.825) * (-4077.887) (-4079.504) (-4080.499) [-4077.180] -- 0:04:05
757000 -- [-4069.849] (-4073.712) (-4083.682) (-4095.230) * (-4076.361) (-4093.770) (-4074.266) [-4081.137] -- 0:04:04
758000 -- [-4072.678] (-4088.948) (-4079.440) (-4086.853) * [-4076.600] (-4083.088) (-4097.305) (-4083.927) -- 0:04:03
759000 -- (-4095.821) (-4109.744) (-4073.546) [-4079.675] * [-4069.168] (-4090.281) (-4095.457) (-4086.120) -- 0:04:02
760000 -- [-4078.892] (-4087.192) (-4084.051) (-4077.834) * [-4080.288] (-4091.057) (-4078.147) (-4088.124) -- 0:04:01
Average standard deviation of split frequencies: 0.007459
761000 -- (-4079.552) (-4080.177) [-4070.493] (-4078.665) * (-4087.444) (-4109.237) (-4082.815) [-4071.270] -- 0:04:00
762000 -- (-4088.523) (-4094.102) (-4088.942) [-4078.215] * (-4073.954) (-4084.902) (-4079.229) [-4079.115] -- 0:03:59
763000 -- (-4099.322) (-4070.139) (-4101.048) [-4086.933] * (-4079.115) (-4087.501) (-4071.320) [-4077.488] -- 0:03:58
764000 -- (-4080.356) (-4070.273) (-4092.358) [-4068.029] * (-4093.347) [-4075.615] (-4091.889) (-4087.595) -- 0:03:57
765000 -- (-4085.036) [-4092.220] (-4088.155) (-4095.868) * (-4086.886) (-4076.800) [-4068.379] (-4072.532) -- 0:03:56
Average standard deviation of split frequencies: 0.007550
766000 -- (-4095.719) (-4094.462) [-4089.496] (-4096.651) * [-4074.466] (-4104.083) (-4078.118) (-4087.354) -- 0:03:55
767000 -- (-4083.610) (-4080.261) [-4078.943] (-4090.364) * (-4084.812) (-4094.563) (-4087.434) [-4077.013] -- 0:03:54
768000 -- [-4083.471] (-4083.111) (-4089.163) (-4082.813) * [-4081.838] (-4088.251) (-4089.784) (-4082.594) -- 0:03:53
769000 -- (-4100.269) [-4068.871] (-4088.630) (-4082.692) * (-4107.028) (-4088.647) [-4074.815] (-4092.824) -- 0:03:52
770000 -- [-4073.855] (-4081.076) (-4080.540) (-4091.084) * (-4087.027) [-4081.101] (-4080.672) (-4091.920) -- 0:03:51
Average standard deviation of split frequencies: 0.007652
771000 -- [-4070.504] (-4086.598) (-4086.719) (-4085.964) * (-4077.613) [-4075.156] (-4087.237) (-4097.806) -- 0:03:50
772000 -- (-4087.454) (-4072.923) (-4076.320) [-4078.672] * [-4088.586] (-4095.740) (-4086.193) (-4079.743) -- 0:03:49
773000 -- (-4081.021) (-4073.879) [-4079.008] (-4085.370) * [-4083.062] (-4069.733) (-4084.668) (-4076.479) -- 0:03:48
774000 -- [-4083.847] (-4091.256) (-4076.303) (-4081.646) * (-4079.315) [-4076.381] (-4073.772) (-4112.276) -- 0:03:47
775000 -- [-4079.305] (-4076.298) (-4087.559) (-4083.253) * (-4084.288) [-4081.864] (-4069.990) (-4083.974) -- 0:03:46
Average standard deviation of split frequencies: 0.007809
776000 -- [-4067.118] (-4098.078) (-4091.658) (-4087.106) * (-4068.613) (-4080.567) [-4073.641] (-4083.951) -- 0:03:45
777000 -- (-4086.244) (-4091.372) [-4078.566] (-4104.745) * (-4086.258) (-4092.109) [-4081.858] (-4075.536) -- 0:03:44
778000 -- (-4091.607) (-4077.165) [-4073.061] (-4085.996) * (-4074.343) (-4090.244) [-4069.101] (-4095.117) -- 0:03:43
779000 -- (-4091.312) [-4068.973] (-4073.850) (-4077.160) * [-4070.557] (-4088.551) (-4069.040) (-4079.769) -- 0:03:42
780000 -- [-4084.091] (-4077.662) (-4077.836) (-4081.937) * [-4074.646] (-4096.398) (-4078.546) (-4086.872) -- 0:03:41
Average standard deviation of split frequencies: 0.007783
781000 -- (-4085.995) [-4087.137] (-4073.296) (-4075.489) * (-4085.105) (-4077.278) [-4069.074] (-4093.388) -- 0:03:40
782000 -- [-4084.905] (-4080.320) (-4101.551) (-4084.920) * (-4083.308) (-4081.688) [-4070.411] (-4087.857) -- 0:03:39
783000 -- [-4076.009] (-4092.448) (-4095.757) (-4077.032) * (-4104.267) [-4069.194] (-4080.510) (-4081.809) -- 0:03:38
784000 -- [-4067.562] (-4077.024) (-4071.322) (-4106.790) * (-4085.074) (-4071.690) (-4094.131) [-4064.641] -- 0:03:37
785000 -- [-4065.229] (-4091.673) (-4085.375) (-4079.653) * [-4082.055] (-4067.497) (-4103.314) (-4090.167) -- 0:03:36
Average standard deviation of split frequencies: 0.007655
786000 -- (-4088.185) (-4077.625) (-4089.078) [-4073.542] * [-4071.084] (-4086.202) (-4086.393) (-4079.910) -- 0:03:35
787000 -- [-4076.568] (-4085.365) (-4081.597) (-4089.579) * (-4075.425) (-4083.815) [-4088.520] (-4068.452) -- 0:03:34
788000 -- (-4078.797) (-4084.923) [-4079.457] (-4095.807) * (-4092.830) (-4071.177) [-4076.631] (-4070.824) -- 0:03:33
789000 -- (-4072.647) [-4078.798] (-4103.594) (-4072.803) * [-4072.753] (-4104.942) (-4085.480) (-4074.872) -- 0:03:32
790000 -- [-4084.332] (-4077.290) (-4080.818) (-4079.582) * [-4071.701] (-4085.794) (-4072.487) (-4075.549) -- 0:03:31
Average standard deviation of split frequencies: 0.007577
791000 -- (-4092.354) (-4085.648) [-4070.011] (-4072.902) * (-4095.405) [-4073.957] (-4095.048) (-4087.709) -- 0:03:30
792000 -- (-4085.389) (-4076.195) [-4071.356] (-4085.997) * (-4076.169) (-4073.967) [-4077.045] (-4091.951) -- 0:03:29
793000 -- (-4088.192) [-4066.663] (-4085.202) (-4085.869) * [-4084.555] (-4077.299) (-4077.108) (-4098.755) -- 0:03:28
794000 -- (-4079.655) (-4092.547) (-4082.466) [-4098.639] * (-4080.717) (-4078.841) (-4079.874) [-4081.518] -- 0:03:27
795000 -- (-4073.681) [-4072.001] (-4077.546) (-4079.945) * (-4080.434) (-4087.637) [-4070.967] (-4083.099) -- 0:03:26
Average standard deviation of split frequencies: 0.007589
796000 -- (-4080.190) (-4086.430) [-4078.822] (-4086.868) * (-4085.493) (-4082.390) [-4077.828] (-4082.655) -- 0:03:25
797000 -- (-4098.327) (-4089.196) [-4074.203] (-4099.664) * (-4077.338) [-4074.778] (-4094.827) (-4104.526) -- 0:03:24
798000 -- (-4107.240) [-4075.212] (-4086.887) (-4083.722) * (-4072.212) (-4078.225) [-4077.213] (-4090.526) -- 0:03:23
799000 -- (-4073.531) (-4072.925) (-4085.832) [-4085.670] * [-4064.925] (-4092.213) (-4092.265) (-4090.778) -- 0:03:22
800000 -- (-4072.637) [-4069.592] (-4069.347) (-4069.194) * (-4074.357) (-4088.268) [-4073.403] (-4097.355) -- 0:03:21
Average standard deviation of split frequencies: 0.007632
801000 -- [-4079.268] (-4094.310) (-4084.432) (-4078.107) * [-4073.420] (-4094.803) (-4079.786) (-4092.303) -- 0:03:20
802000 -- (-4081.201) [-4069.325] (-4086.148) (-4089.966) * (-4097.050) [-4082.041] (-4086.384) (-4094.169) -- 0:03:19
803000 -- [-4074.580] (-4093.878) (-4071.049) (-4102.683) * (-4093.039) [-4068.809] (-4080.404) (-4087.392) -- 0:03:18
804000 -- (-4076.370) (-4083.543) [-4075.518] (-4092.310) * [-4077.852] (-4102.367) (-4073.780) (-4090.874) -- 0:03:17
805000 -- (-4087.705) [-4081.501] (-4090.697) (-4082.240) * (-4080.522) (-4089.217) [-4083.883] (-4097.896) -- 0:03:16
Average standard deviation of split frequencies: 0.007809
806000 -- (-4102.042) [-4094.982] (-4073.261) (-4088.331) * (-4084.926) [-4080.453] (-4096.990) (-4089.377) -- 0:03:15
807000 -- (-4108.213) (-4080.433) (-4085.236) [-4083.673] * [-4071.556] (-4104.549) (-4086.118) (-4096.609) -- 0:03:14
808000 -- (-4084.574) [-4066.451] (-4105.740) (-4079.788) * (-4087.761) [-4082.500] (-4093.137) (-4106.646) -- 0:03:13
809000 -- [-4078.756] (-4067.331) (-4101.913) (-4078.465) * (-4082.710) (-4092.085) (-4070.985) [-4075.304] -- 0:03:12
810000 -- (-4089.110) [-4074.575] (-4091.706) (-4083.978) * [-4077.035] (-4085.365) (-4091.005) (-4082.489) -- 0:03:11
Average standard deviation of split frequencies: 0.007570
811000 -- (-4080.275) (-4098.630) [-4088.882] (-4078.518) * [-4067.197] (-4074.345) (-4096.129) (-4089.071) -- 0:03:10
812000 -- (-4087.511) [-4078.982] (-4083.654) (-4098.811) * (-4090.112) [-4073.702] (-4095.728) (-4076.073) -- 0:03:09
813000 -- (-4073.720) (-4077.019) [-4075.305] (-4087.401) * (-4094.285) (-4081.828) (-4085.655) [-4083.399] -- 0:03:08
814000 -- (-4080.899) [-4078.643] (-4093.230) (-4083.689) * (-4097.203) [-4078.747] (-4077.861) (-4085.059) -- 0:03:07
815000 -- (-4093.398) [-4086.326] (-4088.515) (-4081.234) * [-4088.980] (-4076.739) (-4087.727) (-4081.555) -- 0:03:06
Average standard deviation of split frequencies: 0.007852
816000 -- (-4086.310) (-4094.218) [-4073.606] (-4100.181) * (-4087.582) (-4063.784) (-4074.209) [-4073.873] -- 0:03:05
817000 -- [-4072.560] (-4087.826) (-4083.793) (-4091.694) * (-4085.224) (-4101.278) [-4071.574] (-4089.759) -- 0:03:04
818000 -- (-4094.152) (-4083.898) (-4083.370) [-4094.858] * (-4088.932) (-4078.454) (-4100.725) [-4071.122] -- 0:03:03
819000 -- (-4089.699) (-4069.106) [-4077.566] (-4089.709) * (-4094.941) (-4086.517) (-4085.111) [-4082.572] -- 0:03:02
820000 -- (-4091.896) (-4087.165) [-4081.917] (-4069.717) * (-4088.357) (-4087.772) [-4070.675] (-4081.798) -- 0:03:01
Average standard deviation of split frequencies: 0.007840
821000 -- (-4087.135) (-4093.015) (-4083.566) [-4072.921] * (-4077.602) (-4081.288) [-4079.549] (-4082.333) -- 0:03:00
822000 -- [-4076.104] (-4087.788) (-4078.691) (-4107.881) * (-4077.563) (-4089.807) [-4066.852] (-4083.846) -- 0:02:59
823000 -- (-4072.684) (-4079.413) (-4092.511) [-4074.193] * (-4087.297) (-4078.476) [-4072.634] (-4083.024) -- 0:02:58
824000 -- [-4075.440] (-4088.710) (-4086.327) (-4081.824) * (-4095.028) (-4088.009) (-4097.447) [-4080.604] -- 0:02:57
825000 -- [-4086.083] (-4075.072) (-4087.043) (-4084.732) * (-4080.763) [-4078.313] (-4084.797) (-4092.587) -- 0:02:56
Average standard deviation of split frequencies: 0.007937
826000 -- [-4084.184] (-4084.055) (-4105.630) (-4088.689) * [-4075.205] (-4083.920) (-4093.423) (-4082.635) -- 0:02:55
827000 -- (-4101.523) (-4078.366) [-4080.264] (-4088.035) * (-4085.612) [-4072.789] (-4084.824) (-4072.144) -- 0:02:54
828000 -- (-4100.963) (-4074.978) [-4084.207] (-4074.403) * (-4079.490) (-4088.150) [-4075.776] (-4086.709) -- 0:02:53
829000 -- (-4091.133) (-4098.465) [-4072.993] (-4075.623) * (-4080.102) (-4090.411) (-4086.957) [-4073.211] -- 0:02:52
830000 -- (-4082.314) (-4082.661) [-4069.428] (-4087.796) * [-4069.422] (-4077.274) (-4084.918) (-4079.498) -- 0:02:51
Average standard deviation of split frequencies: 0.008008
831000 -- (-4085.681) (-4100.315) (-4084.526) [-4077.938] * (-4075.569) (-4086.041) [-4068.143] (-4092.325) -- 0:02:50
832000 -- (-4091.125) (-4084.282) (-4090.887) [-4081.680] * (-4080.673) (-4092.441) (-4092.435) [-4083.023] -- 0:02:49
833000 -- (-4075.618) (-4081.944) (-4095.362) [-4062.695] * [-4072.884] (-4088.379) (-4089.264) (-4075.156) -- 0:02:48
834000 -- (-4090.527) (-4074.688) [-4091.862] (-4092.521) * (-4076.068) (-4083.096) (-4093.708) [-4070.576] -- 0:02:46
835000 -- (-4081.643) (-4080.450) [-4081.544] (-4089.581) * [-4082.734] (-4079.094) (-4085.131) (-4078.406) -- 0:02:45
Average standard deviation of split frequencies: 0.008124
836000 -- (-4087.169) (-4081.205) [-4077.560] (-4076.236) * (-4084.162) [-4087.075] (-4085.526) (-4090.334) -- 0:02:44
837000 -- (-4097.925) (-4088.200) (-4086.420) [-4075.170] * (-4079.917) (-4087.322) (-4074.024) [-4075.764] -- 0:02:43
838000 -- (-4089.072) (-4100.305) [-4081.578] (-4088.762) * (-4074.503) (-4091.212) [-4065.688] (-4096.685) -- 0:02:42
839000 -- (-4092.845) [-4068.701] (-4107.571) (-4081.136) * (-4076.197) (-4090.190) [-4078.171] (-4088.843) -- 0:02:41
840000 -- (-4088.690) [-4073.065] (-4092.429) (-4091.369) * [-4079.705] (-4080.044) (-4074.176) (-4086.796) -- 0:02:40
Average standard deviation of split frequencies: 0.007923
841000 -- (-4083.366) (-4089.159) (-4090.220) [-4075.467] * (-4088.124) (-4078.882) (-4080.369) [-4073.575] -- 0:02:39
842000 -- [-4075.608] (-4093.047) (-4081.245) (-4070.486) * (-4094.920) (-4086.551) (-4087.051) [-4083.545] -- 0:02:38
843000 -- [-4067.810] (-4093.643) (-4075.569) (-4096.800) * (-4101.455) (-4083.250) [-4063.496] (-4082.224) -- 0:02:37
844000 -- (-4081.446) (-4085.133) (-4077.126) [-4089.908] * (-4083.797) (-4082.245) (-4086.094) [-4073.917] -- 0:02:36
845000 -- (-4087.121) [-4069.442] (-4091.291) (-4081.939) * (-4094.892) (-4077.922) (-4080.847) [-4080.896] -- 0:02:35
Average standard deviation of split frequencies: 0.007822
846000 -- (-4086.966) (-4084.664) (-4083.076) [-4084.346] * (-4089.391) [-4076.547] (-4074.949) (-4079.626) -- 0:02:34
847000 -- (-4091.498) (-4091.997) [-4077.767] (-4088.115) * (-4072.893) [-4074.978] (-4071.108) (-4079.137) -- 0:02:33
848000 -- (-4083.331) (-4086.539) [-4095.111] (-4088.565) * [-4075.843] (-4067.009) (-4082.380) (-4076.250) -- 0:02:32
849000 -- [-4083.671] (-4073.099) (-4085.672) (-4078.852) * [-4072.721] (-4083.168) (-4088.225) (-4083.514) -- 0:02:31
850000 -- (-4085.870) [-4067.283] (-4084.854) (-4076.755) * [-4075.983] (-4078.620) (-4078.613) (-4076.326) -- 0:02:30
Average standard deviation of split frequencies: 0.007799
851000 -- (-4088.843) [-4075.322] (-4100.721) (-4073.445) * [-4072.340] (-4083.665) (-4079.186) (-4081.463) -- 0:02:29
852000 -- [-4078.625] (-4092.974) (-4088.189) (-4069.436) * (-4082.129) (-4082.556) [-4080.301] (-4073.604) -- 0:02:28
853000 -- (-4075.839) [-4088.357] (-4081.171) (-4072.469) * (-4083.031) [-4070.384] (-4092.515) (-4086.218) -- 0:02:27
854000 -- (-4095.511) (-4080.989) [-4084.665] (-4083.597) * (-4082.037) [-4083.846] (-4091.606) (-4086.997) -- 0:02:26
855000 -- (-4085.321) [-4068.923] (-4086.992) (-4089.955) * [-4086.091] (-4081.632) (-4079.924) (-4095.488) -- 0:02:25
Average standard deviation of split frequencies: 0.007832
856000 -- (-4092.735) (-4076.415) (-4075.869) [-4075.705] * [-4069.401] (-4071.461) (-4083.961) (-4077.298) -- 0:02:24
857000 -- (-4085.226) (-4089.686) (-4088.192) [-4086.254] * (-4096.101) (-4078.885) [-4078.957] (-4088.355) -- 0:02:23
858000 -- [-4074.791] (-4089.121) (-4087.078) (-4099.196) * (-4069.964) [-4078.300] (-4073.014) (-4088.828) -- 0:02:22
859000 -- (-4089.622) (-4102.982) (-4074.623) [-4095.453] * (-4090.535) (-4101.780) (-4089.831) [-4076.162] -- 0:02:21
860000 -- (-4100.656) (-4072.977) (-4093.075) [-4080.464] * (-4096.923) (-4070.572) (-4097.691) [-4089.546] -- 0:02:20
Average standard deviation of split frequencies: 0.007881
861000 -- (-4073.440) (-4080.774) (-4079.969) [-4075.192] * [-4074.224] (-4078.827) (-4080.842) (-4069.166) -- 0:02:19
862000 -- (-4091.016) (-4087.033) (-4074.548) [-4087.758] * (-4079.198) (-4078.431) (-4087.269) [-4084.874] -- 0:02:18
863000 -- (-4092.099) (-4079.871) (-4096.929) [-4078.221] * [-4078.296] (-4088.220) (-4082.186) (-4085.714) -- 0:02:17
864000 -- (-4080.330) (-4080.941) (-4092.263) [-4074.717] * (-4075.997) (-4093.813) (-4091.306) [-4072.014] -- 0:02:16
865000 -- (-4088.581) (-4083.099) [-4072.424] (-4079.380) * (-4098.655) [-4080.127] (-4096.163) (-4076.484) -- 0:02:15
Average standard deviation of split frequencies: 0.007752
866000 -- (-4091.701) (-4081.629) [-4072.061] (-4066.686) * (-4080.521) (-4070.534) (-4104.161) [-4088.805] -- 0:02:14
867000 -- (-4081.639) (-4087.218) [-4066.424] (-4089.288) * [-4074.627] (-4087.393) (-4082.569) (-4083.691) -- 0:02:13
868000 -- (-4114.895) (-4083.132) (-4081.851) [-4075.241] * (-4091.478) [-4073.467] (-4098.874) (-4080.349) -- 0:02:12
869000 -- (-4095.004) [-4073.434] (-4081.673) (-4083.445) * [-4077.917] (-4112.590) (-4082.652) (-4080.508) -- 0:02:11
870000 -- (-4081.023) [-4074.149] (-4086.504) (-4076.749) * (-4077.829) (-4085.571) [-4074.137] (-4085.901) -- 0:02:10
Average standard deviation of split frequencies: 0.007688
871000 -- (-4086.862) (-4085.211) [-4074.288] (-4086.423) * (-4082.692) (-4096.544) [-4076.288] (-4087.511) -- 0:02:09
872000 -- [-4079.982] (-4079.456) (-4094.380) (-4073.787) * (-4074.682) (-4079.248) [-4077.486] (-4077.487) -- 0:02:08
873000 -- (-4084.508) (-4088.933) (-4095.221) [-4084.691] * [-4076.237] (-4090.331) (-4069.633) (-4098.616) -- 0:02:07
874000 -- (-4070.722) [-4075.804] (-4101.021) (-4083.940) * (-4088.597) [-4074.392] (-4086.620) (-4083.831) -- 0:02:06
875000 -- [-4076.880] (-4100.523) (-4080.663) (-4077.649) * (-4104.379) [-4072.468] (-4078.674) (-4078.476) -- 0:02:05
Average standard deviation of split frequencies: 0.007622
876000 -- (-4075.999) (-4093.494) (-4081.078) [-4077.906] * (-4090.258) (-4090.593) (-4084.112) [-4090.393] -- 0:02:04
877000 -- (-4089.223) [-4075.051] (-4074.710) (-4073.646) * (-4073.866) [-4082.426] (-4103.409) (-4087.310) -- 0:02:03
878000 -- [-4076.080] (-4082.325) (-4100.079) (-4085.734) * (-4095.391) (-4080.880) (-4099.766) [-4077.009] -- 0:02:02
879000 -- [-4080.101] (-4074.388) (-4088.765) (-4090.705) * [-4082.260] (-4065.057) (-4109.981) (-4082.413) -- 0:02:01
880000 -- (-4091.214) (-4078.413) [-4079.087] (-4112.102) * (-4086.995) (-4078.407) (-4086.864) [-4066.941] -- 0:02:00
Average standard deviation of split frequencies: 0.007757
881000 -- (-4070.454) [-4076.954] (-4086.602) (-4074.284) * (-4077.296) (-4084.056) (-4075.064) [-4083.715] -- 0:01:59
882000 -- (-4085.499) (-4089.237) (-4101.381) [-4085.259] * [-4090.792] (-4088.739) (-4086.829) (-4078.264) -- 0:01:58
883000 -- (-4075.955) (-4087.845) (-4101.040) [-4073.755] * (-4092.354) [-4083.125] (-4085.497) (-4085.990) -- 0:01:57
884000 -- (-4083.895) (-4082.776) (-4081.615) [-4075.723] * (-4094.343) (-4103.992) (-4079.292) [-4088.045] -- 0:01:56
885000 -- (-4082.509) [-4079.045] (-4080.404) (-4096.548) * (-4094.578) (-4077.140) [-4079.941] (-4086.854) -- 0:01:55
Average standard deviation of split frequencies: 0.007991
886000 -- (-4075.741) [-4078.586] (-4094.153) (-4081.477) * (-4075.046) [-4078.613] (-4088.261) (-4083.869) -- 0:01:54
887000 -- [-4077.564] (-4091.623) (-4109.752) (-4084.683) * (-4089.836) (-4077.343) (-4077.496) [-4075.948] -- 0:01:53
888000 -- [-4073.856] (-4093.854) (-4093.034) (-4076.804) * (-4074.469) (-4082.859) (-4100.681) [-4086.281] -- 0:01:52
889000 -- (-4080.201) (-4073.100) [-4084.074] (-4080.884) * [-4075.360] (-4079.856) (-4086.362) (-4075.504) -- 0:01:51
890000 -- [-4078.919] (-4079.333) (-4091.019) (-4080.913) * (-4081.565) (-4077.232) [-4071.507] (-4097.831) -- 0:01:50
Average standard deviation of split frequencies: 0.008286
891000 -- (-4078.450) [-4071.467] (-4104.068) (-4105.971) * (-4083.220) (-4079.955) [-4077.359] (-4078.514) -- 0:01:49
892000 -- (-4086.141) (-4091.468) [-4081.702] (-4099.770) * (-4084.697) [-4079.616] (-4094.593) (-4083.389) -- 0:01:48
893000 -- (-4083.182) [-4079.853] (-4084.687) (-4087.538) * (-4093.082) (-4089.590) (-4072.462) [-4074.481] -- 0:01:47
894000 -- [-4076.417] (-4097.882) (-4086.404) (-4066.094) * (-4099.083) [-4067.151] (-4087.862) (-4079.419) -- 0:01:46
895000 -- (-4087.214) (-4098.260) (-4079.132) [-4075.424] * (-4082.080) [-4078.263] (-4084.238) (-4084.291) -- 0:01:45
Average standard deviation of split frequencies: 0.008246
896000 -- (-4087.478) (-4086.231) (-4090.494) [-4085.749] * (-4088.114) (-4081.983) (-4091.512) [-4077.751] -- 0:01:44
897000 -- (-4094.232) (-4079.621) (-4084.860) [-4073.636] * [-4073.634] (-4088.877) (-4092.376) (-4089.707) -- 0:01:43
898000 -- (-4100.183) (-4073.234) [-4084.038] (-4081.922) * [-4074.949] (-4089.514) (-4074.445) (-4083.030) -- 0:01:42
899000 -- (-4088.311) [-4072.605] (-4078.932) (-4096.088) * [-4084.747] (-4091.844) (-4099.027) (-4074.758) -- 0:01:41
900000 -- (-4076.635) [-4075.189] (-4100.806) (-4085.912) * (-4077.048) (-4092.060) (-4073.685) [-4082.184] -- 0:01:40
Average standard deviation of split frequencies: 0.008136
901000 -- (-4083.349) [-4069.918] (-4091.595) (-4098.505) * (-4072.693) [-4085.454] (-4085.228) (-4082.978) -- 0:01:39
902000 -- (-4079.683) [-4066.616] (-4089.328) (-4079.344) * (-4084.081) [-4074.368] (-4088.371) (-4076.962) -- 0:01:38
903000 -- (-4086.853) (-4077.895) (-4082.970) [-4073.775] * [-4087.469] (-4072.089) (-4079.261) (-4074.695) -- 0:01:37
904000 -- (-4085.755) (-4077.621) [-4086.672] (-4086.178) * [-4080.557] (-4082.754) (-4112.261) (-4087.581) -- 0:01:36
905000 -- (-4076.158) (-4080.048) (-4094.976) [-4084.444] * (-4086.854) [-4074.797] (-4092.344) (-4087.117) -- 0:01:35
Average standard deviation of split frequencies: 0.008022
906000 -- [-4076.900] (-4085.589) (-4084.848) (-4087.142) * (-4070.853) [-4077.131] (-4083.154) (-4066.386) -- 0:01:34
907000 -- (-4082.260) [-4086.807] (-4078.358) (-4091.320) * [-4077.035] (-4102.535) (-4088.351) (-4074.978) -- 0:01:33
908000 -- [-4075.636] (-4070.643) (-4077.233) (-4076.783) * [-4075.702] (-4093.788) (-4100.365) (-4072.861) -- 0:01:32
909000 -- (-4086.173) (-4088.444) (-4095.273) [-4083.154] * [-4072.372] (-4098.805) (-4091.002) (-4086.735) -- 0:01:31
910000 -- (-4078.642) (-4092.079) (-4090.358) [-4070.910] * (-4075.186) [-4085.185] (-4102.626) (-4083.753) -- 0:01:30
Average standard deviation of split frequencies: 0.008047
911000 -- (-4087.032) (-4079.182) (-4097.956) [-4090.073] * (-4086.185) (-4094.295) (-4086.450) [-4075.296] -- 0:01:29
912000 -- (-4080.326) (-4078.783) (-4083.806) [-4075.937] * (-4086.821) [-4076.013] (-4078.524) (-4089.288) -- 0:01:28
913000 -- (-4077.737) (-4076.566) [-4082.870] (-4077.911) * (-4093.339) (-4077.721) (-4093.596) [-4079.715] -- 0:01:27
914000 -- [-4080.586] (-4094.753) (-4087.754) (-4090.520) * (-4092.396) [-4069.568] (-4078.248) (-4077.233) -- 0:01:26
915000 -- (-4072.689) (-4078.570) (-4079.930) [-4075.077] * (-4074.697) (-4073.054) (-4103.559) [-4082.919] -- 0:01:25
Average standard deviation of split frequencies: 0.007860
916000 -- (-4072.745) [-4084.454] (-4082.596) (-4074.582) * (-4094.709) [-4079.012] (-4088.832) (-4078.938) -- 0:01:24
917000 -- [-4089.259] (-4087.466) (-4088.025) (-4085.816) * (-4088.780) (-4086.668) [-4076.993] (-4073.327) -- 0:01:23
918000 -- (-4105.351) (-4094.275) (-4085.472) [-4073.752] * (-4097.686) [-4077.835] (-4089.924) (-4071.702) -- 0:01:22
919000 -- (-4094.475) (-4079.563) [-4074.461] (-4075.308) * (-4078.756) (-4087.531) [-4077.129] (-4083.730) -- 0:01:21
920000 -- (-4083.763) (-4082.500) (-4092.599) [-4076.324] * (-4095.809) [-4079.603] (-4087.198) (-4065.958) -- 0:01:20
Average standard deviation of split frequencies: 0.008118
921000 -- (-4071.437) [-4077.052] (-4085.953) (-4080.620) * (-4079.942) (-4096.105) [-4077.682] (-4088.898) -- 0:01:19
922000 -- [-4088.450] (-4091.438) (-4090.032) (-4080.146) * [-4077.999] (-4085.717) (-4096.582) (-4084.921) -- 0:01:18
923000 -- (-4070.045) (-4095.458) [-4068.858] (-4093.951) * [-4081.837] (-4081.535) (-4099.986) (-4074.095) -- 0:01:17
924000 -- (-4072.850) [-4074.395] (-4103.057) (-4077.942) * (-4082.009) (-4089.965) (-4096.429) [-4075.638] -- 0:01:16
925000 -- [-4078.685] (-4078.982) (-4090.118) (-4074.733) * [-4082.929] (-4100.072) (-4094.360) (-4087.361) -- 0:01:15
Average standard deviation of split frequencies: 0.008062
926000 -- (-4110.350) (-4074.537) (-4077.701) [-4089.107] * [-4080.665] (-4079.585) (-4088.675) (-4085.523) -- 0:01:14
927000 -- (-4080.962) (-4081.745) [-4077.481] (-4086.146) * (-4082.619) [-4077.251] (-4098.787) (-4091.699) -- 0:01:13
928000 -- (-4078.042) [-4074.591] (-4082.833) (-4079.870) * (-4081.145) (-4080.524) (-4084.123) [-4080.927] -- 0:01:12
929000 -- (-4088.590) (-4101.406) [-4084.835] (-4078.011) * [-4076.758] (-4082.015) (-4082.011) (-4085.150) -- 0:01:11
930000 -- [-4086.402] (-4083.080) (-4081.492) (-4086.061) * (-4080.736) (-4079.809) [-4087.143] (-4083.750) -- 0:01:10
Average standard deviation of split frequencies: 0.008003
931000 -- (-4084.879) [-4068.395] (-4094.670) (-4089.020) * (-4085.061) (-4090.412) (-4082.094) [-4073.907] -- 0:01:09
932000 -- [-4076.345] (-4084.607) (-4092.504) (-4077.884) * [-4088.083] (-4093.264) (-4079.913) (-4076.190) -- 0:01:08
933000 -- (-4077.159) [-4080.719] (-4096.438) (-4080.707) * (-4084.721) (-4075.039) (-4074.634) [-4081.170] -- 0:01:07
934000 -- (-4087.906) (-4089.872) (-4098.107) [-4074.835] * [-4069.849] (-4080.415) (-4093.550) (-4085.302) -- 0:01:06
935000 -- (-4079.002) (-4092.770) (-4101.196) [-4073.951] * [-4070.435] (-4086.034) (-4078.103) (-4082.575) -- 0:01:05
Average standard deviation of split frequencies: 0.007619
936000 -- (-4072.336) (-4083.522) (-4096.576) [-4074.778] * (-4088.318) (-4073.011) (-4084.279) [-4080.428] -- 0:01:04
937000 -- (-4080.330) [-4081.920] (-4081.961) (-4086.915) * (-4098.467) (-4082.534) [-4072.836] (-4086.140) -- 0:01:03
938000 -- (-4083.019) [-4088.165] (-4088.056) (-4086.071) * (-4092.875) (-4098.366) (-4079.320) [-4081.861] -- 0:01:02
939000 -- (-4080.461) (-4081.863) [-4075.121] (-4098.237) * (-4081.957) (-4096.589) [-4073.029] (-4077.224) -- 0:01:01
940000 -- (-4100.497) (-4073.474) [-4072.279] (-4088.268) * (-4093.008) [-4077.716] (-4076.901) (-4072.970) -- 0:01:00
Average standard deviation of split frequencies: 0.007362
941000 -- (-4080.972) (-4085.091) [-4076.926] (-4100.151) * (-4083.817) (-4081.107) [-4072.656] (-4088.795) -- 0:00:59
942000 -- (-4090.931) [-4074.571] (-4075.079) (-4090.954) * (-4095.282) (-4075.214) [-4074.830] (-4083.818) -- 0:00:58
943000 -- (-4094.766) [-4077.151] (-4088.651) (-4075.131) * (-4075.378) [-4067.755] (-4082.840) (-4084.728) -- 0:00:57
944000 -- (-4084.168) (-4066.090) (-4091.758) [-4070.976] * (-4077.055) [-4070.358] (-4079.659) (-4088.467) -- 0:00:56
945000 -- (-4083.859) (-4095.665) [-4076.879] (-4084.678) * (-4072.953) (-4081.610) [-4082.476] (-4098.723) -- 0:00:55
Average standard deviation of split frequencies: 0.007520
946000 -- (-4093.623) [-4066.869] (-4069.066) (-4083.980) * (-4086.664) [-4081.785] (-4090.363) (-4090.608) -- 0:00:54
947000 -- (-4106.956) (-4085.729) [-4063.694] (-4093.415) * [-4069.237] (-4096.722) (-4081.694) (-4076.241) -- 0:00:53
948000 -- [-4081.145] (-4088.695) (-4089.860) (-4088.038) * [-4072.503] (-4088.294) (-4078.114) (-4075.372) -- 0:00:52
949000 -- (-4083.476) [-4082.902] (-4099.429) (-4080.904) * (-4087.626) (-4106.664) (-4083.579) [-4073.670] -- 0:00:51
950000 -- (-4078.337) (-4077.366) (-4090.803) [-4077.994] * [-4088.400] (-4097.681) (-4086.067) (-4079.057) -- 0:00:50
Average standard deviation of split frequencies: 0.007240
951000 -- (-4077.622) [-4071.572] (-4079.347) (-4075.795) * (-4082.692) (-4105.920) (-4077.887) [-4073.990] -- 0:00:49
952000 -- (-4078.328) (-4081.420) [-4074.832] (-4098.432) * (-4086.420) (-4086.246) [-4065.895] (-4093.364) -- 0:00:48
953000 -- (-4092.528) (-4093.746) (-4088.728) [-4075.666] * (-4091.025) (-4090.035) [-4077.062] (-4080.398) -- 0:00:47
954000 -- (-4091.121) (-4094.136) (-4084.733) [-4075.780] * (-4092.916) (-4086.257) (-4090.376) [-4070.231] -- 0:00:46
955000 -- [-4082.423] (-4087.014) (-4079.390) (-4090.165) * (-4092.025) [-4075.476] (-4086.944) (-4089.791) -- 0:00:45
Average standard deviation of split frequencies: 0.007137
956000 -- (-4096.369) [-4079.255] (-4071.273) (-4088.790) * (-4091.149) [-4069.965] (-4070.524) (-4075.937) -- 0:00:44
957000 -- (-4076.552) (-4081.296) (-4102.055) [-4080.870] * [-4078.375] (-4094.298) (-4086.175) (-4068.917) -- 0:00:43
958000 -- (-4094.618) [-4078.426] (-4084.168) (-4091.944) * (-4080.278) (-4086.961) (-4082.188) [-4064.013] -- 0:00:42
959000 -- (-4091.425) (-4079.576) (-4075.994) [-4077.051] * (-4080.940) [-4079.573] (-4095.029) (-4079.656) -- 0:00:41
960000 -- (-4076.238) (-4087.230) [-4070.349] (-4097.643) * [-4072.818] (-4092.707) (-4103.492) (-4070.811) -- 0:00:40
Average standard deviation of split frequencies: 0.006941
961000 -- (-4072.292) (-4101.012) (-4067.314) [-4082.601] * (-4073.516) [-4084.882] (-4092.964) (-4085.841) -- 0:00:39
962000 -- [-4081.477] (-4077.520) (-4081.125) (-4100.948) * (-4085.249) (-4120.088) (-4080.429) [-4072.766] -- 0:00:38
963000 -- (-4088.259) [-4076.079] (-4092.446) (-4087.422) * (-4096.495) (-4079.074) [-4082.296] (-4079.074) -- 0:00:37
964000 -- (-4111.940) (-4082.857) [-4066.667] (-4085.338) * (-4100.366) (-4078.761) [-4072.145] (-4077.645) -- 0:00:36
965000 -- (-4091.154) (-4075.701) (-4077.632) [-4070.585] * [-4084.624] (-4101.652) (-4073.070) (-4081.970) -- 0:00:35
Average standard deviation of split frequencies: 0.006752
966000 -- (-4095.485) (-4082.073) (-4080.861) [-4078.080] * (-4100.432) (-4084.838) (-4076.809) [-4064.342] -- 0:00:34
967000 -- [-4068.857] (-4104.326) (-4085.657) (-4067.160) * (-4095.083) (-4078.982) [-4077.090] (-4071.352) -- 0:00:33
968000 -- (-4085.036) (-4085.730) (-4081.011) [-4081.019] * (-4086.296) (-4087.554) [-4083.111] (-4082.720) -- 0:00:32
969000 -- [-4078.340] (-4086.804) (-4074.522) (-4092.501) * [-4090.600] (-4074.051) (-4083.570) (-4078.020) -- 0:00:31
970000 -- (-4080.138) (-4098.366) [-4070.302] (-4101.473) * (-4082.059) (-4072.470) (-4081.948) [-4066.326] -- 0:00:30
Average standard deviation of split frequencies: 0.006887
971000 -- [-4080.284] (-4079.398) (-4078.356) (-4097.691) * (-4089.903) (-4071.021) [-4083.541] (-4087.302) -- 0:00:29
972000 -- [-4072.786] (-4072.921) (-4080.226) (-4103.861) * (-4072.776) (-4095.174) (-4072.840) [-4077.921] -- 0:00:28
973000 -- (-4074.796) (-4089.350) [-4074.334] (-4084.973) * (-4095.812) (-4084.248) [-4067.859] (-4100.808) -- 0:00:27
974000 -- (-4078.567) (-4077.912) [-4068.648] (-4085.934) * (-4088.461) [-4076.281] (-4082.359) (-4095.696) -- 0:00:26
975000 -- [-4076.375] (-4079.247) (-4084.308) (-4090.958) * (-4071.365) (-4084.819) [-4075.856] (-4094.704) -- 0:00:25
Average standard deviation of split frequencies: 0.007017
976000 -- (-4087.808) [-4076.354] (-4082.834) (-4076.515) * (-4073.410) (-4082.804) (-4100.021) [-4077.164] -- 0:00:24
977000 -- (-4075.255) [-4080.350] (-4081.341) (-4097.335) * [-4070.129] (-4072.882) (-4084.220) (-4084.183) -- 0:00:23
978000 -- (-4079.970) (-4088.671) [-4067.445] (-4071.899) * (-4103.833) (-4080.902) [-4073.408] (-4081.861) -- 0:00:22
979000 -- [-4088.141] (-4079.854) (-4091.571) (-4084.573) * (-4081.592) [-4087.179] (-4075.616) (-4083.042) -- 0:00:21
980000 -- [-4085.014] (-4076.235) (-4074.275) (-4079.177) * (-4078.226) [-4068.165] (-4076.917) (-4079.471) -- 0:00:20
Average standard deviation of split frequencies: 0.007018
981000 -- [-4073.488] (-4070.981) (-4095.532) (-4087.250) * (-4089.599) (-4075.341) (-4085.409) [-4086.751] -- 0:00:19
982000 -- (-4092.664) (-4092.064) [-4082.868] (-4089.725) * [-4076.177] (-4089.629) (-4108.936) (-4086.288) -- 0:00:18
983000 -- [-4076.138] (-4073.895) (-4089.925) (-4076.853) * (-4081.835) (-4084.764) (-4075.962) [-4077.753] -- 0:00:17
984000 -- (-4085.210) [-4066.004] (-4095.494) (-4082.852) * [-4090.726] (-4079.746) (-4079.555) (-4080.734) -- 0:00:16
985000 -- (-4093.989) (-4095.442) (-4100.894) [-4070.871] * (-4096.132) (-4072.802) (-4076.850) [-4085.845] -- 0:00:15
Average standard deviation of split frequencies: 0.006989
986000 -- (-4090.585) (-4099.488) (-4082.060) [-4074.266] * (-4088.390) (-4077.668) [-4085.922] (-4071.194) -- 0:00:14
987000 -- (-4088.504) [-4073.730] (-4101.714) (-4079.274) * (-4096.167) (-4087.266) (-4097.397) [-4075.512] -- 0:00:13
988000 -- (-4081.875) (-4084.675) [-4082.012] (-4077.726) * (-4079.874) [-4068.740] (-4078.393) (-4085.894) -- 0:00:12
989000 -- (-4078.431) (-4092.139) [-4075.971] (-4087.665) * (-4073.105) (-4078.735) [-4072.664] (-4093.547) -- 0:00:11
990000 -- (-4078.557) (-4080.598) [-4078.777] (-4085.715) * (-4085.836) (-4075.029) (-4068.884) [-4085.696] -- 0:00:10
Average standard deviation of split frequencies: 0.006869
991000 -- (-4078.295) (-4111.416) [-4081.546] (-4082.752) * (-4094.681) (-4067.611) (-4071.861) [-4075.828] -- 0:00:09
992000 -- (-4079.563) [-4090.636] (-4099.233) (-4087.951) * (-4076.115) [-4080.163] (-4096.634) (-4086.400) -- 0:00:08
993000 -- [-4071.055] (-4079.901) (-4091.830) (-4088.506) * [-4077.759] (-4075.557) (-4097.013) (-4085.901) -- 0:00:07
994000 -- (-4087.153) (-4084.811) [-4074.625] (-4090.300) * (-4085.012) (-4086.267) [-4075.168] (-4076.635) -- 0:00:06
995000 -- (-4088.255) (-4079.721) (-4086.745) [-4084.604] * (-4096.982) (-4089.325) (-4077.329) [-4078.153] -- 0:00:05
Average standard deviation of split frequencies: 0.006798
996000 -- (-4085.431) [-4087.769] (-4093.056) (-4076.507) * (-4087.418) (-4099.327) (-4073.654) [-4080.832] -- 0:00:04
997000 -- (-4089.964) (-4087.180) (-4082.183) [-4074.855] * (-4088.178) [-4072.311] (-4089.289) (-4079.530) -- 0:00:03
998000 -- (-4091.014) (-4090.910) (-4079.362) [-4079.640] * (-4079.400) (-4076.178) (-4078.889) [-4079.388] -- 0:00:02
999000 -- (-4090.088) (-4079.366) (-4097.421) [-4075.791] * (-4083.034) (-4093.335) [-4083.991] (-4090.268) -- 0:00:01
1000000 -- (-4076.807) [-4070.855] (-4079.620) (-4096.557) * (-4087.140) (-4093.849) (-4078.060) [-4080.737] -- 0:00:00
Average standard deviation of split frequencies: 0.007006
Analysis completed in 16 mins 45 seconds
Analysis used 1004.11 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -4056.71
Likelihood of best state for "cold" chain of run 2 was -4057.36
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
37.1 % ( 32 %) Dirichlet(Revmat{all})
54.3 % ( 39 %) Slider(Revmat{all})
21.6 % ( 33 %) Dirichlet(Pi{all})
25.4 % ( 30 %) Slider(Pi{all})
30.8 % ( 26 %) Multiplier(Alpha{1,2})
49.2 % ( 27 %) Multiplier(Alpha{3})
35.6 % ( 26 %) Slider(Pinvar{all})
40.8 % ( 43 %) ExtSPR(Tau{all},V{all})
24.6 % ( 26 %) ExtTBR(Tau{all},V{all})
44.9 % ( 49 %) NNI(Tau{all},V{all})
38.9 % ( 39 %) ParsSPR(Tau{all},V{all})
27.0 % ( 25 %) Multiplier(V{all})
52.6 % ( 49 %) Nodeslider(V{all})
25.2 % ( 25 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
37.5 % ( 37 %) Dirichlet(Revmat{all})
54.7 % ( 37 %) Slider(Revmat{all})
21.0 % ( 13 %) Dirichlet(Pi{all})
26.5 % ( 26 %) Slider(Pi{all})
30.8 % ( 28 %) Multiplier(Alpha{1,2})
49.1 % ( 23 %) Multiplier(Alpha{3})
35.0 % ( 26 %) Slider(Pinvar{all})
40.4 % ( 43 %) ExtSPR(Tau{all},V{all})
24.9 % ( 19 %) ExtTBR(Tau{all},V{all})
45.1 % ( 38 %) NNI(Tau{all},V{all})
38.9 % ( 41 %) ParsSPR(Tau{all},V{all})
27.1 % ( 24 %) Multiplier(V{all})
52.7 % ( 50 %) Nodeslider(V{all})
25.5 % ( 21 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.61 0.32 0.15
2 | 166607 0.63 0.35
3 | 166433 166545 0.65
4 | 166585 166900 166930
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.61 0.32 0.15
2 | 166857 0.63 0.36
3 | 166570 166612 0.66
4 | 166778 166383 166800
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -4073.58
| 2 1 |
| 2 2 |
| 1 1 1 1 2 |
| 1 2 1 11 1 * 2 2 |
| 2 11 2 1 12 21 2 |
| 1 2 1 2 21 |
|* 12 2 2 2 2 2 2 * 2|
| 221 2 12 122 21 1 21 1 1 1 2 1212 |
| 1 2 * 1 *211 1 2 2 112 2 |
| 2 1 2 1 1 1 1 2 2 1 2 1 2 |
| 2 22 11 2 12 |
| 2 1 1 1|
| 22 1 2 1 1 |
| 1 |
| 1 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -4081.17
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -4066.57 -4093.35
2 -4064.60 -4097.90
--------------------------------------
TOTAL -4065.16 -4097.22
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.437964 0.001914 0.355542 0.524915 0.434708 1328.03 1371.98 1.001
r(A<->C){all} 0.102679 0.000414 0.062191 0.139893 0.102016 716.84 822.05 1.000
r(A<->G){all} 0.282874 0.001322 0.212033 0.354075 0.281904 599.73 673.53 1.000
r(A<->T){all} 0.057600 0.000147 0.034269 0.082270 0.056877 968.59 997.28 1.000
r(C<->G){all} 0.044771 0.000207 0.018836 0.072071 0.044060 963.13 1021.69 1.001
r(C<->T){all} 0.475030 0.001515 0.406121 0.554614 0.474503 597.16 620.82 1.000
r(G<->T){all} 0.037046 0.000105 0.018239 0.057271 0.036306 1197.02 1208.72 1.002
pi(A){all} 0.255817 0.000122 0.233358 0.276316 0.255880 964.46 1044.54 1.000
pi(C){all} 0.183135 0.000085 0.165362 0.200939 0.182872 1043.14 1083.57 1.002
pi(G){all} 0.234083 0.000116 0.211600 0.253639 0.234092 907.97 989.04 1.001
pi(T){all} 0.326966 0.000137 0.304612 0.349515 0.326663 1155.44 1233.85 1.000
alpha{1,2} 0.187820 0.000960 0.134238 0.249917 0.183866 1215.26 1332.56 1.000
alpha{3} 3.923657 2.216696 1.560366 6.920324 3.655199 1251.52 1376.26 1.000
pinvar{all} 0.676020 0.000762 0.624873 0.729291 0.677365 1259.36 1299.90 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C1
2 -- C10
3 -- C11
4 -- C12
5 -- C13
6 -- C14
7 -- C15
8 -- C16
9 -- C17
10 -- C18
11 -- C19
12 -- C2
13 -- C20
14 -- C21
15 -- C22
16 -- C23
17 -- C24
18 -- C3
19 -- C4
20 -- C5
21 -- C6
22 -- C7
23 -- C8
24 -- C9
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
------------------------------
1 -- .***********************
2 -- .*......................
3 -- ..*.....................
4 -- ...*....................
5 -- ....*...................
6 -- .....*..................
7 -- ......*.................
8 -- .......*................
9 -- ........*...............
10 -- .........*..............
11 -- ..........*.............
12 -- ...........*............
13 -- ............*...........
14 -- .............*..........
15 -- ..............*.........
16 -- ...............*........
17 -- ................*.......
18 -- .................*......
19 -- ..................*.....
20 -- ...................*....
21 -- ....................*...
22 -- .....................*..
23 -- ......................*.
24 -- .......................*
25 -- ..*.........*...........
26 -- ...*..*.*..*..*.*.....*.
27 -- .........**..*.*.**....*
28 -- .****.******************
29 -- ....*..*............*...
30 -- .*..*..*.**..*.*.*****.*
31 -- .*.................*.*..
32 -- ...........*..*.......*.
33 -- .............*...**.....
34 -- .*...................*..
35 -- ..**..*.*..**.*.*.....*.
36 -- .*..*..*...........***..
37 -- ....*...............*...
38 -- .............*....*.....
39 -- .................**.....
40 -- ...........*..........*.
41 -- ....*..*................
42 -- ..............*.......*.
43 -- .......*............*...
44 -- ...........*..*.........
45 -- .............*...*......
46 -- ....*..*.**..*.*.**.*..*
47 -- .**.*..*.**.**.*.*****.*
48 -- ..........*..*.*.**....*
49 -- ........*.......*.......
50 -- ......*....*..*.......*.
51 -- .........*.............*
52 -- ...*.......*..*.......*.
53 -- ..........*....*........
54 -- ...*..*.*.......*.......
55 -- .........**..*.*.**.....
56 -- ...*..*....*..*.*.....*.
57 -- ...*............*.......
58 -- ...*..*.................
59 -- ..........*............*
60 -- .............*.*.**.....
61 -- ...........*..*.*.....*.
62 -- ..........*..*...**.....
63 -- .........**....*.......*
64 -- ......*.*...............
65 -- .........**.............
66 -- .........*...*.*.**....*
67 -- ......*.........*.......
68 -- ...*....*..*..*.*.....*.
69 -- ........*..*..*.......*.
70 -- .........**..*...**....*
71 -- ......*.*..*..*.*.....*.
72 -- ...*..*.*..*..*.......*.
73 -- ...............*.......*
74 -- .............*...**....*
75 -- ...*....*...............
76 -- .........*.....*........
77 -- ...................*.*..
78 -- .........*...*...**.....
79 -- ...*..*....*..*.......*.
------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
25 3002 1.000000 0.000000 1.000000 1.000000 2
26 3002 1.000000 0.000000 1.000000 1.000000 2
27 3002 1.000000 0.000000 1.000000 1.000000 2
28 3002 1.000000 0.000000 1.000000 1.000000 2
29 3002 1.000000 0.000000 1.000000 1.000000 2
30 2966 0.988008 0.000942 0.987342 0.988674 2
31 2954 0.984011 0.000000 0.984011 0.984011 2
32 2953 0.983678 0.004240 0.980680 0.986676 2
33 2909 0.969021 0.004240 0.966023 0.972019 2
34 2607 0.868421 0.017430 0.856096 0.880746 2
35 2458 0.818787 0.010364 0.811459 0.826116 2
36 2262 0.753498 0.016017 0.742172 0.764823 2
37 1019 0.339440 0.004240 0.336442 0.342438 2
38 1010 0.336442 0.001884 0.335110 0.337775 2
39 1006 0.335110 0.015075 0.324450 0.345769 2
40 1000 0.333111 0.012248 0.324450 0.341772 2
41 997 0.332112 0.003298 0.329780 0.334444 2
42 995 0.331446 0.007066 0.326449 0.336442 2
43 986 0.328448 0.007537 0.323118 0.333777 2
44 984 0.327781 0.005653 0.323784 0.331779 2
45 971 0.323451 0.016488 0.311792 0.335110 2
46 486 0.161892 0.016959 0.149900 0.173884 2
47 480 0.159893 0.007537 0.154564 0.165223 2
48 472 0.157229 0.009422 0.150566 0.163891 2
49 463 0.154231 0.002355 0.152565 0.155896 2
50 458 0.152565 0.003769 0.149900 0.155230 2
51 455 0.151566 0.001413 0.150566 0.152565 2
52 454 0.151233 0.005653 0.147235 0.155230 2
53 442 0.147235 0.019786 0.133245 0.161226 2
54 437 0.145570 0.002355 0.143904 0.147235 2
55 436 0.145237 0.010364 0.137908 0.152565 2
56 435 0.144903 0.004240 0.141905 0.147901 2
57 435 0.144903 0.002355 0.143238 0.146569 2
58 434 0.144570 0.008480 0.138574 0.150566 2
59 433 0.144237 0.003298 0.141905 0.146569 2
60 433 0.144237 0.008009 0.138574 0.149900 2
61 427 0.142239 0.007066 0.137242 0.147235 2
62 427 0.142239 0.008009 0.136576 0.147901 2
63 426 0.141905 0.002827 0.139907 0.143904 2
64 423 0.140906 0.009893 0.133911 0.147901 2
65 421 0.140240 0.009893 0.133245 0.147235 2
66 419 0.139574 0.001413 0.138574 0.140573 2
67 419 0.139574 0.011777 0.131246 0.147901 2
68 417 0.138907 0.002355 0.137242 0.140573 2
69 415 0.138241 0.005182 0.134577 0.141905 2
70 413 0.137575 0.020257 0.123251 0.151899 2
71 410 0.136576 0.019786 0.122585 0.150566 2
72 410 0.136576 0.000000 0.136576 0.136576 2
73 408 0.135909 0.010364 0.128581 0.143238 2
74 407 0.135576 0.002355 0.133911 0.137242 2
75 406 0.135243 0.002827 0.133245 0.137242 2
76 396 0.131912 0.002827 0.129913 0.133911 2
77 394 0.131246 0.017901 0.118588 0.143904 2
78 388 0.129247 0.002827 0.127249 0.131246 2
79 278 0.092605 0.015075 0.081945 0.103264 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.040555 0.000080 0.023986 0.058058 0.039679 1.003 2
length{all}[2] 0.055529 0.000118 0.035649 0.076880 0.054524 1.000 2
length{all}[3] 0.000867 0.000001 0.000000 0.002660 0.000615 1.000 2
length{all}[4] 0.001732 0.000002 0.000061 0.004285 0.001447 1.000 2
length{all}[5] 0.000885 0.000001 0.000000 0.002709 0.000597 1.000 2
length{all}[6] 0.030311 0.000058 0.016426 0.044539 0.029472 1.000 2
length{all}[7] 0.000897 0.000001 0.000000 0.002655 0.000636 1.000 2
length{all}[8] 0.000881 0.000001 0.000000 0.002571 0.000633 1.000 2
length{all}[9] 0.000880 0.000001 0.000001 0.002663 0.000594 1.000 2
length{all}[10] 0.000846 0.000001 0.000001 0.002598 0.000583 1.000 2
length{all}[11] 0.000846 0.000001 0.000000 0.002526 0.000586 1.000 2
length{all}[12] 0.000855 0.000001 0.000001 0.002515 0.000613 1.000 2
length{all}[13] 0.000874 0.000001 0.000000 0.002594 0.000630 1.001 2
length{all}[14] 0.014496 0.000015 0.007832 0.022560 0.014023 1.001 2
length{all}[15] 0.000883 0.000001 0.000000 0.002693 0.000586 1.000 2
length{all}[16] 0.000855 0.000001 0.000000 0.002566 0.000577 1.000 2
length{all}[17] 0.000866 0.000001 0.000001 0.002658 0.000603 1.000 2
length{all}[18] 0.000862 0.000001 0.000000 0.002542 0.000612 1.000 2
length{all}[19] 0.000838 0.000001 0.000001 0.002500 0.000576 1.000 2
length{all}[20] 0.016219 0.000031 0.006660 0.027800 0.015707 1.000 2
length{all}[21] 0.000865 0.000001 0.000000 0.002588 0.000594 1.000 2
length{all}[22] 0.031644 0.000073 0.017221 0.049461 0.030781 1.000 2
length{all}[23] 0.000880 0.000001 0.000002 0.002639 0.000600 1.000 2
length{all}[24] 0.000831 0.000001 0.000001 0.002575 0.000566 1.000 2
length{all}[25] 0.024116 0.000039 0.012194 0.036921 0.023458 1.000 2
length{all}[26] 0.030142 0.000051 0.015645 0.043592 0.029687 1.000 2
length{all}[27] 0.023319 0.000039 0.012515 0.036044 0.022628 1.001 2
length{all}[28] 0.027855 0.000061 0.013082 0.042651 0.027081 1.000 2
length{all}[29] 0.036227 0.000067 0.020638 0.051895 0.035580 1.000 2
length{all}[30] 0.021112 0.000048 0.008347 0.034355 0.020595 1.000 2
length{all}[31] 0.025465 0.000054 0.011618 0.039844 0.024624 1.001 2
length{all}[32] 0.001744 0.000001 0.000026 0.004107 0.001480 1.000 2
length{all}[33] 0.001694 0.000001 0.000008 0.003977 0.001441 1.000 2
length{all}[34] 0.016072 0.000034 0.005152 0.027546 0.015422 1.001 2
length{all}[35] 0.009999 0.000025 0.001159 0.019824 0.009351 1.000 2
length{all}[36] 0.009015 0.000024 0.000008 0.017968 0.008394 1.000 2
length{all}[37] 0.000861 0.000001 0.000002 0.002579 0.000620 0.999 2
length{all}[38] 0.000802 0.000001 0.000001 0.002390 0.000555 0.999 2
length{all}[39] 0.000878 0.000001 0.000001 0.002622 0.000610 1.000 2
length{all}[40] 0.000832 0.000001 0.000001 0.002526 0.000591 0.999 2
length{all}[41] 0.000896 0.000001 0.000000 0.002688 0.000596 0.999 2
length{all}[42] 0.000861 0.000001 0.000000 0.002515 0.000604 0.999 2
length{all}[43] 0.000824 0.000001 0.000000 0.002474 0.000538 0.999 2
length{all}[44] 0.000937 0.000001 0.000000 0.002637 0.000679 1.003 2
length{all}[45] 0.000802 0.000001 0.000000 0.002333 0.000558 0.999 2
length{all}[46] 0.007095 0.000021 0.000152 0.015557 0.006574 1.007 2
length{all}[47] 0.006390 0.000013 0.000870 0.013697 0.005818 1.002 2
length{all}[48] 0.000905 0.000001 0.000000 0.002681 0.000610 0.998 2
length{all}[49] 0.000842 0.000001 0.000002 0.002447 0.000563 1.001 2
length{all}[50] 0.000794 0.000001 0.000004 0.002557 0.000505 0.998 2
length{all}[51] 0.000799 0.000001 0.000003 0.002532 0.000544 0.999 2
length{all}[52] 0.000881 0.000001 0.000002 0.002701 0.000614 1.002 2
length{all}[53] 0.000865 0.000001 0.000003 0.002562 0.000588 0.999 2
length{all}[54] 0.000953 0.000001 0.000004 0.002812 0.000606 0.998 2
length{all}[55] 0.000871 0.000001 0.000001 0.002581 0.000576 1.010 2
length{all}[56] 0.000885 0.000001 0.000001 0.002630 0.000590 0.998 2
length{all}[57] 0.000859 0.000001 0.000001 0.002633 0.000593 1.004 2
length{all}[58] 0.000892 0.000001 0.000001 0.002713 0.000579 0.999 2
length{all}[59] 0.000834 0.000001 0.000001 0.002507 0.000586 1.002 2
length{all}[60] 0.000857 0.000001 0.000001 0.002492 0.000592 0.998 2
length{all}[61] 0.000862 0.000001 0.000000 0.002454 0.000644 1.001 2
length{all}[62] 0.000854 0.000001 0.000002 0.002451 0.000628 0.998 2
length{all}[63] 0.000871 0.000001 0.000001 0.002841 0.000554 0.998 2
length{all}[64] 0.000918 0.000001 0.000002 0.002989 0.000638 1.000 2
length{all}[65] 0.000816 0.000001 0.000004 0.002374 0.000559 1.006 2
length{all}[66] 0.000873 0.000001 0.000000 0.002513 0.000568 0.998 2
length{all}[67] 0.000835 0.000001 0.000002 0.002513 0.000518 0.998 2
length{all}[68] 0.000893 0.000001 0.000003 0.002584 0.000634 0.998 2
length{all}[69] 0.000927 0.000001 0.000003 0.002706 0.000607 0.998 2
length{all}[70] 0.000866 0.000001 0.000002 0.002520 0.000593 1.000 2
length{all}[71] 0.000894 0.000001 0.000000 0.002572 0.000601 1.010 2
length{all}[72] 0.000873 0.000001 0.000001 0.002728 0.000548 1.003 2
length{all}[73] 0.000860 0.000001 0.000000 0.002456 0.000607 0.998 2
length{all}[74] 0.000875 0.000001 0.000000 0.002599 0.000561 1.003 2
length{all}[75] 0.000915 0.000001 0.000002 0.002639 0.000672 1.002 2
length{all}[76] 0.000825 0.000001 0.000002 0.002252 0.000654 1.001 2
length{all}[77] 0.015075 0.000057 0.002885 0.029699 0.013418 0.998 2
length{all}[78] 0.000887 0.000001 0.000010 0.002560 0.000665 1.000 2
length{all}[79] 0.000881 0.000001 0.000002 0.002469 0.000643 0.998 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.007006
Maximum standard deviation of split frequencies = 0.020257
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.010
Clade credibility values:
/---------------------------------------------------------------------- C1 (1)
|
|---------------------------------------------------------------------- C14 (6)
|
| /------------ C10 (2)
| /----87----+
| | \------------ C7 (22)
| /-----98----+
| | \----------------------- C5 (20)
| |
| /-----75----+ /------------ C13 (5)
| | | |
| | \----------100---------+------------ C16 (8)
+ | |
| | \------------ C6 (21)
| |
| /----99----+ /----------------------- C18 (10)
| | | |
| | | |----------------------- C19 (11)
| | | |
| | | | /------------ C21 (14)
| | | | |
| | \----------100----------+----97----+------------ C3 (18)
| | | |
| | | \------------ C4 (19)
| | |
\----100----+ |----------------------- C23 (16)
| |
| \----------------------- C9 (24)
|
| /------------ C11 (3)
| /----------100---------+
| | \------------ C20 (13)
| |
| | /----------------------- C12 (4)
| | |
\----------82----------+ |----------------------- C15 (7)
| |
| |----------------------- C17 (9)
| |
\----100----+ /------------ C2 (12)
| |
|----98----+------------ C22 (15)
| |
| \------------ C8 (23)
|
\----------------------- C24 (17)
Phylogram (based on average branch lengths):
/------------------- C1 (1)
|
|-------------- C14 (6)
|
| /-------------------------- C10 (2)
| /------+
| | \--------------- C7 (22)
| /-----------+
| | \------- C5 (20)
| |
| /---+ / C13 (5)
| | | |
| | \----------------+ C16 (8)
+ | |
| | \ C6 (21)
| |
| /--------+ / C18 (10)
| | | |
| | | | C19 (11)
| | | |
| | | |/------ C21 (14)
| | | ||
| | \----------++ C3 (18)
| | ||
| | |\ C4 (19)
| | |
\------------+ | C23 (16)
| |
| \ C9 (24)
|
| /- C11 (3)
| /----------+
| | \- C20 (13)
| |
| | /- C12 (4)
| | |
\---+ | C15 (7)
| |
| | C17 (9)
| |
\-------------+/ C2 (12)
||
|+ C22 (15)
||
|\ C8 (23)
|
\ C24 (17)
|--------| 0.020 expected changes per site
Calculating tree probabilities...
Credible sets of trees (2998 trees sampled):
50 % credible set contains 1497 trees
90 % credible set contains 2698 trees
95 % credible set contains 2848 trees
99 % credible set contains 2968 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Wed Nov 02 20:11:27 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.10 sec, SCORE=1000, Nseq=24, Len=521
C1 CTTNLFKDCSKSYIGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C2 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C3 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C4 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C5 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C6 CTTNLFKDCSRSYAGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C7 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C8 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C9 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C10 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C11 CTTNLFKDCSRSYEGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C12 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVSY
C13 CTTNLFKDCSRSYAGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C14 CTTNLFKDCSKSYDGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSSVTY
C15 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C16 CTTNLFKDCSRSYAGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C17 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C18 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C19 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C20 CTTNLFKDCSRSYEGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C21 CTTNLFKDCSKSYVGIPP--CAFLLAVDDKYKVSGNLAVCLNVADSAVTY
C22 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
C23 CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTY
C24 CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTY
**********:** * * .. :*********.*:**********:*:*
C1 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C2 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C3 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C4 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C5 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C6 SRLISLMGFKLDLTLDGYCKLFITRDEAIRRVRAWVGFDAEGAHATRDSI
C7 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C8 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C9 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C10 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C11 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C12 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C13 SRLISLMGFKLDLTLDGYCKLFITRDEAIRRVRAWVGFDAEGAHATRDSI
C14 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C15 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C16 SRLISLMGFKLDLTLDGYCKLFITRDEAIRRVRAWVGFDAEGAHATRDSI
C17 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C18 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C19 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C20 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C21 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C22 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
C23 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSI
C24 SRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSI
*****************************:*************** ****
C1 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C2 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C3 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C4 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C5 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVP
C6 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVP
C7 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVP
C8 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C9 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C10 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C11 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGDQFKHLVP
C12 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C13 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVP
C14 GTNFPLQLGFSTGIDFVVEATGMFAEREGYVFKKAAARAPPGEQFKHLVP
C15 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C16 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVP
C17 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C18 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C19 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C20 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGDQFKHLVP
C21 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C22 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
C23 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVP
C24 GTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIP
***************************:*******.******:*****:*
C1 LLSRGQKWDEVRIRIVPMVSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C2 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C3 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C4 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C5 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C6 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C7 LMSRGQKWEVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C8 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C9 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C10 LMARGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C11 LMSRGQKWDVVRTRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C12 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C13 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C14 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C15 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C16 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C17 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C18 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C19 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C20 LMSRGQKWDVVRTRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C21 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C22 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C23 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
C24 LMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKV
*::*****: ** *** *:*******************************
C1 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIEQWGYTG
C2 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C3 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C4 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C5 GKEVMCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C6 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C7 GKEVMCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C8 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C9 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C10 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C11 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C12 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C13 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C14 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C15 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C16 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C17 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C18 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C19 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C20 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C21 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C22 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C23 GKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
C24 GREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTG
*:**:****.*********************************:******
C1 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C2 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C3 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C4 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C5 SLTSNHDQICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C6 SLTSNHDLICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWSLEYPIISN
C7 SLTSNHDQICSMHKGAHVASSDAIMTRCLAVHDCFCKSVNWNVEYPIISN
C8 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C9 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C10 SLTSNHDQICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNVEYPIISN
C11 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKFVNWNLEYPIISN
C12 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C13 SLTSNHDLICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWSLEYPIISN
C14 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIILN
C15 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C16 SLTSNHDLICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWSLEYPIISN
C17 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C18 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C19 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C20 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKFVNWNLEYPIISN
C21 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C22 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C23 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
C24 SLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
******* ***:************************* ***.:***** *
C1 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C2 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C3 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C4 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C5 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C6 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C7 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C8 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C9 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C10 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C11 EVSVNASCRSLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C12 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C13 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C14 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C15 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C16 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C17 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C18 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C19 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C20 EVSVNASCRSLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C21 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C22 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C23 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
C24 EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDA
*****:*** ****************************************
C1 SPVVKSVKQFVYKYEAHKDLFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C2 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C3 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C4 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C5 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C6 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C7 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C8 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C9 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C10 SPVVKSVKQFVYKYEAHKDLFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C11 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C12 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C13 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C14 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C15 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C16 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C17 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C18 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C19 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C20 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C21 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C22 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C23 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
C24 SPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVL
******************* ******************************
C1 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C2 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C3 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C4 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C5 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C6 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C7 NKLNLPGCNGGSLYVNKHAFHTIPFTRAAFENLKPMPFFYYSDTPCVYME
C8 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C9 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C10 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C11 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C12 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C13 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C14 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C15 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C16 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C17 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C18 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C19 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C20 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C21 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C22 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
C23 SKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYME
C24 NKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYME
.********************* ***************************
C1 GMDSKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C2 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C3 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C4 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C5 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C6 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEDYREYLESYNTATTAGF
C7 GMESKQVDYVPLRSATCITRCNLGGAVCVKHAEEYREYLESYNTATTAGF
C8 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C9 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C10 GMESKQVDYVPLRSATCITRCNLGGAVCVKHAEEYREYLESYNTATTAGF
C11 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C12 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C13 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEDYREYLESYNTATTAGF
C14 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C15 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C16 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEDYREYLESYNTATTAGF
C17 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C18 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C19 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C20 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C21 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C22 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C23 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
C24 GMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGF
**:*************************:****:****************
C1 TFWVYKTFDFYNLWNTFAKLQ
C2 TFWVYKTFDFYNLWNTFTRLQ
C3 TFWVYKTFDFYNLWNTFTRLQ
C4 TFWVYKTFDFYNLWNTFTRLQ
C5 TFWVYKTFDFYNLWNTFTRLQ
C6 TFWVYKTFDFYNLWNTFTRLQ
C7 TFWVYKTFDFYNLWNTFTRLQ
C8 TFWVYKTFDFYNLWNTFTRLQ
C9 TFWVYKTFDFYNLWNTFTRLQ
C10 TFWVYRTFDFYNLWNTFTRLQ
C11 TFWVYKTFDFYNLWNTFTRLQ
C12 TFWVYKTFDFYNLWNTFTRLQ
C13 TFWVYKTFDFYNLWNTFTRLQ
C14 TFWVYKTFDFYNLWNTFTRLQ
C15 TFWVYKTFDFYNLWNTFTRLQ
C16 TFWVYKTFDFYNLWNTFTRLQ
C17 TFWVYKTFDFYNLWNTFTRLQ
C18 TFWVYKTFDFYNLWNTFTRLQ
C19 TFWVYKTFDFYNLWNTFTRLQ
C20 TFWVYKTFDFYNLWNTFTRLQ
C21 TFWVYKTFDFYNLWNTFTRLQ
C22 TFWVYKTFDFYNLWNTFTRLQ
C23 TFWVYKTFDFYNLWNTFTRLQ
C24 TFWVYKTFDFYNLWNTFTRLQ
*****:***********::**
-- Starting log on Thu Nov 03 01:13:35 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/codeml,A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C1 1563 sites
reading seq# 2 C2 1563 sites
reading seq# 3 C3 1563 sites
reading seq# 4 C4 1563 sites
reading seq# 5 C5 1563 sites
reading seq# 6 C6 1563 sites
reading seq# 7 C7 1563 sites
reading seq# 8 C8 1563 sites
reading seq# 9 C9 1563 sites
reading seq#10 C10 1563 sites
reading seq#11 C11 1563 sites
reading seq#12 C12 1563 sites
reading seq#13 C13 1563 sites
reading seq#14 C14 1563 sites
reading seq#15 C15 1563 sites
reading seq#16 C16 1563 sites
reading seq#17 C17 1563 sites
reading seq#18 C18 1563 sites
reading seq#19 C19 1563 sites
reading seq#20 C20 1563 sites
reading seq#21 C21 1563 sites
reading seq#22 C22 1563 sites
reading seq#23 C23 1563 sites
reading seq#24 C24 1563 sitesns = 24 ls = 1563
Reading sequences, sequential format..
Reading seq # 1: C1
Reading seq # 2: C2
Reading seq # 3: C3
Reading seq # 4: C4
Reading seq # 5: C5
Reading seq # 6: C6
Reading seq # 7: C7
Reading seq # 8: C8
Reading seq # 9: C9
Reading seq #10: C10
Reading seq #11: C11
Reading seq #12: C12
Reading seq #13: C13
Reading seq #14: C14
Reading seq #15: C15
Reading seq #16: C16
Reading seq #17: C17
Reading seq #18: C18
Reading seq #19: C19
Reading seq #20: C20
Reading seq #21: C21
Reading seq #22: C22
Reading seq #23: C23
Reading seq #24: C24
Sites with gaps or missing data are removed.
6 ambiguity characters in seq. 21
2 sites are removed. 19 20
Sequences read..
Counting site patterns.. 0:00
Compressing, 246 patterns at 519 / 519 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 246 patterns at 519 / 519 sites (100.0%), 0:00
Counting codons..
2208 bytes for distance
240096 bytes for conP
21648 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(1, 14, (((((10, 7), 5), (13, 16, 6)), (18, 19, (21, 3, 4), 23, 9)), ((11, 20), (12, 15, 17, (2, 22, 8), 24)))); MP score: 336
1560624 bytes for conP, adjusted
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
26
0.083428 0.036806 0.081210 0.031145 0.072095 0.046206 0.031274 0.080052 0.032644 0.024655 0.106906 0.012389 0.037336 0.069982 0.101035 0.038353 0.106719 0.060436 0.103827 0.078816 0.060723 0.064593 0.100602 0.012102 0.061452 0.024598 0.079421 0.077686 0.102361 0.023692 0.090531 0.085275 0.073512 0.023948 0.074844 0.052689 0.300000 0.890330 0.225812
ntime & nrate & np: 36 2 39
Bounds (np=39):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 18.977035
np = 39
lnL0 = -4855.289533
Iterating by ming2
Initial: fx= 4855.289533
x= 0.08343 0.03681 0.08121 0.03114 0.07209 0.04621 0.03127 0.08005 0.03264 0.02465 0.10691 0.01239 0.03734 0.06998 0.10104 0.03835 0.10672 0.06044 0.10383 0.07882 0.06072 0.06459 0.10060 0.01210 0.06145 0.02460 0.07942 0.07769 0.10236 0.02369 0.09053 0.08527 0.07351 0.02395 0.07484 0.05269 0.30000 0.89033 0.22581
1 h-m-p 0.0000 0.0000 2360.6725 ++ 4698.362107 m 0.0000 44 | 1/39
2 h-m-p 0.0000 0.0000 10860.7554 ++ 4575.417382 m 0.0000 86 | 2/39
3 h-m-p 0.0000 0.0000 15273.7006 ++ 4572.634435 m 0.0000 128 | 3/39
4 h-m-p 0.0000 0.0000 71187.6035 ++ 4565.583355 m 0.0000 170 | 4/39
5 h-m-p 0.0000 0.0000 26707.8501 ++ 4431.192373 m 0.0000 212 | 5/39
6 h-m-p 0.0000 0.0000 12503.9636 ++ 4415.921442 m 0.0000 254 | 6/39
7 h-m-p 0.0000 0.0000 57436.0561 ++ 4258.172862 m 0.0000 296 | 7/39
8 h-m-p 0.0000 0.0001 545.2743 ++ 4219.497137 m 0.0001 338 | 8/39
9 h-m-p 0.0000 0.0000 2699.9816 ++ 4204.564822 m 0.0000 380 | 9/39
10 h-m-p 0.0000 0.0000 8974.2798 ++ 4185.678677 m 0.0000 422 | 10/39
11 h-m-p 0.0000 0.0000 279161.4043 ++ 4175.159911 m 0.0000 464 | 11/39
12 h-m-p 0.0000 0.0000 15312.1923 ++ 4171.713663 m 0.0000 506 | 12/39
13 h-m-p 0.0000 0.0000 9944.4280 ++ 4161.882782 m 0.0000 548 | 13/39
14 h-m-p 0.0000 0.0000 6296.1826 ++ 4140.471878 m 0.0000 590 | 14/39
15 h-m-p 0.0000 0.0000 4500.8913 ++ 4138.751157 m 0.0000 632 | 15/39
16 h-m-p 0.0000 0.0000 3505.1650 ++ 4129.872911 m 0.0000 674 | 16/39
17 h-m-p 0.0000 0.0000 1365.4101 ++ 4126.957848 m 0.0000 716 | 17/39
18 h-m-p 0.0000 0.0002 189.5080 ++YYYYCYCC 4116.735478 7 0.0002 769 | 17/39
19 h-m-p 0.0000 0.0001 240.0848 +YYYYYYC 4112.517768 6 0.0001 818 | 17/39
20 h-m-p 0.0000 0.0001 1070.1557 CYCCC 4110.076994 4 0.0000 867 | 17/39
21 h-m-p 0.0001 0.0005 102.8526 +YYCCC 4105.606811 4 0.0003 916 | 17/39
22 h-m-p 0.0002 0.0012 118.5816 CCCCC 4098.611625 4 0.0004 966 | 17/39
23 h-m-p 0.0000 0.0002 186.2306 +YYYCCCCC 4094.025295 7 0.0001 1020 | 17/39
24 h-m-p 0.0001 0.0005 242.3357 YCCCC 4084.588326 4 0.0002 1069 | 17/39
25 h-m-p 0.0001 0.0006 138.9205 YCCCC 4081.564620 4 0.0002 1118 | 17/39
26 h-m-p 0.0002 0.0010 138.9812 CCCCC 4079.552382 4 0.0002 1168 | 17/39
27 h-m-p 0.0014 0.0069 17.7531 CCCCC 4075.551346 4 0.0019 1218 | 17/39
28 h-m-p 0.0001 0.0005 106.6196 +YYYYC 4068.279594 4 0.0004 1265 | 17/39
29 h-m-p 0.0002 0.0010 70.7331 YCC 4067.872219 2 0.0001 1310 | 17/39
30 h-m-p 0.0130 0.2760 0.7177 +CCC 4058.965094 2 0.0797 1357 | 17/39
31 h-m-p 0.0085 0.0427 2.3955 +YCYCC 4048.337666 4 0.0263 1428 | 17/39
32 h-m-p 0.0021 0.0104 1.5746 +YYYCYCCC 4043.924589 7 0.0089 1481 | 17/39
33 h-m-p 0.0019 0.0275 7.3918 +YCCC 4023.079724 3 0.0179 1529 | 17/39
34 h-m-p 0.0268 0.1339 1.5797 +YYCCC 4005.401620 4 0.0936 1578 | 17/39
35 h-m-p 0.0303 0.1514 0.7409 +YCYCCC 3995.997819 5 0.0881 1629 | 17/39
36 h-m-p 0.0929 0.4645 0.4628 +YYYYC 3980.349075 4 0.3673 1698 | 17/39
37 h-m-p 0.1017 0.5083 0.4324 +YCCCC 3969.793840 4 0.2937 1770 | 17/39
38 h-m-p 0.3943 1.9714 0.3022 YCCCC 3955.264565 4 0.8161 1841 | 17/39
39 h-m-p 0.2515 1.2577 0.3363 YCCC 3947.469101 3 0.5242 1910 | 17/39
40 h-m-p 0.5320 3.1914 0.3314 CCCC 3941.325393 3 0.6937 1980 | 17/39
41 h-m-p 0.3928 1.9641 0.2648 YCCC 3937.042881 3 0.9249 2049 | 17/39
42 h-m-p 0.9528 5.6874 0.2571 CCC 3934.013269 2 0.9437 2117 | 17/39
43 h-m-p 1.6000 8.0000 0.1356 CCC 3932.317263 2 1.8103 2185 | 17/39
44 h-m-p 1.6000 8.0000 0.1211 CYC 3931.581010 2 1.4941 2252 | 17/39
45 h-m-p 1.5692 8.0000 0.1153 YCC 3931.249323 2 0.9579 2319 | 17/39
46 h-m-p 1.6000 8.0000 0.0413 CCC 3931.034290 2 1.6960 2387 | 17/39
47 h-m-p 0.9722 4.8608 0.0049 CYCC 3930.838129 3 1.5963 2456 | 17/39
48 h-m-p 0.1744 8.0000 0.0449 +YC 3930.715999 1 1.6575 2522 | 17/39
49 h-m-p 1.6000 8.0000 0.0141 YC 3930.685707 1 1.2544 2587 | 17/39
50 h-m-p 1.3145 8.0000 0.0134 CCC 3930.667915 2 1.6985 2655 | 17/39
51 h-m-p 1.6000 8.0000 0.0130 YC 3930.630055 1 3.0194 2720 | 17/39
52 h-m-p 1.6000 8.0000 0.0074 CCC 3930.574432 2 2.2368 2788 | 17/39
53 h-m-p 1.3968 8.0000 0.0119 CCC 3930.540950 2 1.7238 2856 | 17/39
54 h-m-p 1.6000 8.0000 0.0082 YC 3930.530929 1 1.2378 2921 | 17/39
55 h-m-p 1.6000 8.0000 0.0013 CC 3930.529524 1 1.3590 2987 | 17/39
56 h-m-p 1.6000 8.0000 0.0003 C 3930.529240 0 1.3846 3051 | 17/39
57 h-m-p 0.8402 8.0000 0.0005 C 3930.529186 0 1.1816 3115 | 17/39
58 h-m-p 1.6000 8.0000 0.0002 C 3930.529180 0 1.6000 3179 | 17/39
59 h-m-p 1.6000 8.0000 0.0001 C 3930.529179 0 1.6000 3243 | 17/39
60 h-m-p 1.6000 8.0000 0.0001 C 3930.529178 0 1.6000 3307 | 17/39
61 h-m-p 1.6000 8.0000 0.0000 Y 3930.529178 0 0.4000 3371 | 17/39
62 h-m-p 1.6000 8.0000 0.0000 ----------------.. | 17/39
63 h-m-p 0.0037 1.8351 0.0097 ------------ | 17/39
64 h-m-p 0.0037 1.8351 0.0097 ------------
Out..
lnL = -3930.529178
3598 lfun, 10794 eigenQcodon, 259056 P(t)
end of tree file.
Time used: 2:10
Model 2: PositiveSelection
TREE # 1
(1, 14, (((((10, 7), 5), (13, 16, 6)), (18, 19, (21, 3, 4), 23, 9)), ((11, 20), (12, 15, 17, (2, 22, 8), 24)))); MP score: 336
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
26
0.053662 0.070994 0.086334 0.050835 0.046799 0.070313 0.062212 0.062176 0.061330 0.034765 0.024768 0.036079 0.068118 0.089958 0.016598 0.017996 0.058328 0.061476 0.078476 0.095650 0.047104 0.077806 0.078380 0.034530 0.066612 0.066131 0.054083 0.071096 0.065612 0.064436 0.074016 0.024639 0.107769 0.048353 0.096073 0.063728 2.806098 1.058848 0.280976 0.376218 1.373289
ntime & nrate & np: 36 3 41
Bounds (np=41):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 4.791414
np = 41
lnL0 = -4729.931822
Iterating by ming2
Initial: fx= 4729.931822
x= 0.05366 0.07099 0.08633 0.05084 0.04680 0.07031 0.06221 0.06218 0.06133 0.03477 0.02477 0.03608 0.06812 0.08996 0.01660 0.01800 0.05833 0.06148 0.07848 0.09565 0.04710 0.07781 0.07838 0.03453 0.06661 0.06613 0.05408 0.07110 0.06561 0.06444 0.07402 0.02464 0.10777 0.04835 0.09607 0.06373 2.80610 1.05885 0.28098 0.37622 1.37329
1 h-m-p 0.0000 0.0000 2123.3957 ++ 4551.379631 m 0.0000 87 | 1/41
2 h-m-p 0.0000 0.0000 6523.4526 ++ 4455.898387 m 0.0000 172 | 1/41
3 h-m-p 0.0000 0.0000 80237.8796 ++ 4413.994821 m 0.0000 256 | 2/41
4 h-m-p 0.0000 0.0000 6518057.4443 ++ 4330.912240 m 0.0000 340 | 3/41
5 h-m-p 0.0000 0.0000 1395603.8938 ++ 4322.981168 m 0.0000 423 | 4/41
6 h-m-p 0.0000 0.0000 139699.6069 ++ 4280.961215 m 0.0000 505 | 5/41
7 h-m-p 0.0000 0.0000 5763.9732 ++ 4259.006265 m 0.0000 586 | 6/41
8 h-m-p 0.0000 0.0000 71065.1208 ++ 4230.947884 m 0.0000 666 | 7/41
9 h-m-p 0.0000 0.0000 271149.2388 ++ 4227.472274 m 0.0000 745 | 8/41
10 h-m-p 0.0000 0.0000 22048.8198 ++ 4216.217446 m 0.0000 823 | 9/41
11 h-m-p 0.0000 0.0000 19023.0423 ++ 4212.232889 m 0.0000 900 | 10/41
12 h-m-p 0.0000 0.0000 14879.0965 ++ 4190.922192 m 0.0000 976 | 11/41
13 h-m-p 0.0000 0.0000 25360.1113 ++ 4178.983488 m 0.0000 1051 | 12/41
14 h-m-p 0.0000 0.0000 9840.6350 ++ 4177.536133 m 0.0000 1125 | 13/41
15 h-m-p 0.0000 0.0000 8820.0592 ++ 4153.784803 m 0.0000 1198 | 14/41
16 h-m-p 0.0000 0.0000 14727.0399 ++ 4143.926065 m 0.0000 1270 | 15/41
17 h-m-p 0.0000 0.0000 3887.4547 ++ 4143.765388 m 0.0000 1341 | 16/41
18 h-m-p 0.0000 0.0000 5612.9565 ++ 4135.704703 m 0.0000 1411 | 17/41
19 h-m-p 0.0000 0.0001 3634.3459 ++ 4064.799618 m 0.0001 1480 | 17/41
20 h-m-p 0.0000 0.0000 9681.6432
h-m-p: 3.23143798e-20 1.61571899e-19 9.68164319e+03 4064.799618
.. | 17/41
21 h-m-p 0.0000 0.0000 361961.0451 ---YYCYYYYYCC 4054.708246 10 0.0000 1628 | 17/41
22 h-m-p 0.0000 0.0000 606.5706 +YYCYYYC 4047.890011 6 0.0000 1704 | 17/41
23 h-m-p 0.0000 0.0000 3148.1553 +CYYYC 4038.191421 4 0.0000 1778 | 17/41
24 h-m-p 0.0000 0.0000 19157.2291 ++ 4029.803912 m 0.0000 1846 | 18/41
25 h-m-p 0.0001 0.0008 193.3610 +CCCC 4022.779362 3 0.0005 1921 | 18/41
26 h-m-p 0.0002 0.0014 367.3407 CYCC 4017.771719 3 0.0003 1993 | 18/41
27 h-m-p 0.0002 0.0019 396.1560 +YYYC 3995.615045 3 0.0009 2064 | 18/41
28 h-m-p 0.0001 0.0007 1134.1565 YCCC 3980.395580 3 0.0003 2136 | 18/41
29 h-m-p 0.0001 0.0006 900.7756 +YYCCCC 3961.843908 5 0.0004 2212 | 17/41
30 h-m-p 0.0000 0.0002 1179.6952 CYC 3958.564244 2 0.0000 2282 | 17/41
31 h-m-p 0.0000 0.0002 704.4504 ++ 3950.255476 m 0.0002 2350 | 18/41
32 h-m-p 0.0001 0.0004 410.5049 YCCCC 3947.203205 4 0.0002 2425 | 18/41
33 h-m-p 0.0007 0.0033 44.2422 CC 3947.066297 1 0.0002 2494 | 18/41
34 h-m-p 0.0008 0.0089 10.6028 CC 3947.050056 1 0.0003 2563 | 18/41
35 h-m-p 0.0006 0.0265 4.4781 CC 3947.039793 1 0.0006 2632 | 18/41
36 h-m-p 0.0002 0.0357 13.6353 ++CYC 3946.860054 2 0.0029 2704 | 18/41
37 h-m-p 0.0002 0.0225 207.5336 ++CCCC 3942.770034 3 0.0046 2779 | 18/41
38 h-m-p 0.0001 0.0007 1148.9034 CCCC 3941.536981 3 0.0002 2852 | 18/41
39 h-m-p 0.0014 0.0071 70.4423 -YC 3941.485299 1 0.0002 2921 | 18/41
40 h-m-p 0.0043 0.0420 2.7511 YCC 3941.435868 2 0.0025 2991 | 18/41
41 h-m-p 0.0002 0.0274 34.4491 ++YCCC 3939.237405 3 0.0068 3065 | 18/41
42 h-m-p 0.0009 0.0045 51.2472 CC 3939.163043 1 0.0002 3134 | 18/41
43 h-m-p 0.0031 0.2070 3.0841 +CCC 3938.900239 2 0.0192 3206 | 18/41
44 h-m-p 0.0001 0.0095 398.5748 ++YCCC 3935.872329 3 0.0017 3280 | 18/41
45 h-m-p 0.2841 2.2627 2.3679 CYC 3933.958083 2 0.2994 3350 | 18/41
46 h-m-p 0.3962 1.9811 0.3562 YC 3932.306350 1 0.6960 3418 | 18/41
47 h-m-p 1.2135 6.0676 0.1632 C 3931.467082 0 1.2244 3485 | 18/41
48 h-m-p 1.5119 8.0000 0.1321 CCC 3931.010526 2 1.3236 3556 | 17/41
49 h-m-p 0.8219 8.0000 0.2128 CC 3930.932411 1 0.7049 3625 | 17/41
50 h-m-p 0.2128 1.0642 0.1866 YC 3930.868101 1 0.4350 3694 | 17/41
51 h-m-p 0.7332 8.0000 0.1107 YC 3930.788219 1 1.2067 3763 | 17/41
52 h-m-p 1.6000 8.0000 0.0366 C 3930.726603 0 1.6000 3831 | 17/41
53 h-m-p 1.2053 8.0000 0.0485 YC 3930.668612 1 2.5277 3900 | 17/41
54 h-m-p 0.7377 3.6883 0.0839 YC 3930.629715 1 1.5400 3969 | 17/41
55 h-m-p 1.2355 6.1774 0.0353 YC 3930.622626 1 0.8152 4038 | 17/41
56 h-m-p 1.6000 8.0000 0.0059 C 3930.621854 0 1.3161 4106 | 17/41
57 h-m-p 1.6000 8.0000 0.0014 +YC 3930.620537 1 4.6343 4176 | 17/41
58 h-m-p 1.6000 8.0000 0.0037 ++ 3930.603390 m 8.0000 4244 | 17/41
59 h-m-p 0.3827 8.0000 0.0770 +CCCC 3930.546993 3 2.0245 4319 | 17/41
60 h-m-p 1.6000 8.0000 0.0258 CY 3930.522277 1 1.5208 4389 | 17/41
61 h-m-p 1.6000 8.0000 0.0071 YC 3930.520939 1 0.7402 4458 | 17/41
62 h-m-p 1.2913 8.0000 0.0041 Y 3930.520909 0 0.5842 4526 | 17/41
63 h-m-p 1.6000 8.0000 0.0006 Y 3930.520907 0 0.9405 4594 | 17/41
64 h-m-p 1.6000 8.0000 0.0001 Y 3930.520907 0 0.4000 4662 | 17/41
65 h-m-p 0.1010 8.0000 0.0003 --Y 3930.520907 0 0.0016 4732 | 17/41
66 h-m-p 0.0160 8.0000 0.0019 Y 3930.520907 0 0.0040 4800 | 17/41
67 h-m-p 0.0160 8.0000 0.0236 -------C 3930.520906 0 0.0000 4875 | 17/41
68 h-m-p 0.0160 8.0000 0.0012 -------------.. | 17/41
69 h-m-p 0.0010 0.4984 0.1314 -----------
Out..
lnL = -3930.520906
5032 lfun, 20128 eigenQcodon, 543456 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -3948.111730 S = -3829.877683 -109.121884
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 246 patterns 6:43
did 20 / 246 patterns 6:43
did 30 / 246 patterns 6:43
did 40 / 246 patterns 6:43
did 50 / 246 patterns 6:43
did 60 / 246 patterns 6:43
did 70 / 246 patterns 6:43
did 80 / 246 patterns 6:43
did 90 / 246 patterns 6:43
did 100 / 246 patterns 6:44
did 110 / 246 patterns 6:44
did 120 / 246 patterns 6:44
did 130 / 246 patterns 6:44
did 140 / 246 patterns 6:44
did 150 / 246 patterns 6:44
did 160 / 246 patterns 6:44
did 170 / 246 patterns 6:44
did 180 / 246 patterns 6:44
did 190 / 246 patterns 6:44
did 200 / 246 patterns 6:44
did 210 / 246 patterns 6:44
did 220 / 246 patterns 6:44
did 230 / 246 patterns 6:44
did 240 / 246 patterns 6:44
did 246 / 246 patterns 6:44end of tree file.
Time used: 6:44
Model 7: beta
TREE # 1
(1, 14, (((((10, 7), 5), (13, 16, 6)), (18, 19, (21, 3, 4), 23, 9)), ((11, 20), (12, 15, 17, (2, 22, 8), 24)))); MP score: 336
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
26
0.044223 0.090615 0.076439 0.062543 0.076143 0.030310 0.017158 0.011854 0.039198 0.100239 0.053081 0.065908 0.104917 0.023759 0.027876 0.012676 0.035428 0.095139 0.096955 0.096989 0.054135 0.065886 0.103170 0.075366 0.052619 0.033308 0.087970 0.012930 0.100958 0.104770 0.092684 0.033358 0.103658 0.086064 0.079638 0.107783 2.810406 0.283671 1.073415
ntime & nrate & np: 36 1 39
Bounds (np=39):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 9.510584
np = 39
lnL0 = -4681.521079
Iterating by ming2
Initial: fx= 4681.521079
x= 0.04422 0.09061 0.07644 0.06254 0.07614 0.03031 0.01716 0.01185 0.03920 0.10024 0.05308 0.06591 0.10492 0.02376 0.02788 0.01268 0.03543 0.09514 0.09695 0.09699 0.05413 0.06589 0.10317 0.07537 0.05262 0.03331 0.08797 0.01293 0.10096 0.10477 0.09268 0.03336 0.10366 0.08606 0.07964 0.10778 2.81041 0.28367 1.07341
1 h-m-p 0.0000 0.0000 3668.3609 ++ 4496.508433 m 0.0000 83 | 1/39
2 h-m-p 0.0000 0.0000 2148.4355 ++ 4412.593706 m 0.0000 164 | 2/39
3 h-m-p 0.0000 0.0000 604779.8047 ++ 4333.448737 m 0.0000 244 | 3/39
4 h-m-p 0.0000 0.0000 27560.1132 ++ 4330.790624 m 0.0000 323 | 4/39
5 h-m-p 0.0000 0.0000 3978.6422 ++ 4223.111500 m 0.0000 401 | 5/39
6 h-m-p 0.0000 0.0000 42199.4635 ++ 4160.065935 m 0.0000 478 | 6/39
7 h-m-p 0.0000 0.0000 24799.7480 ++ 4154.535195 m 0.0000 554 | 7/39
8 h-m-p 0.0000 0.0000 7053.2882 ++ 4088.209683 m 0.0000 629 | 8/39
9 h-m-p 0.0000 0.0000 3728.4508 ++ 4062.120912 m 0.0000 703 | 9/39
10 h-m-p 0.0000 0.0000 10267.1734 ++ 4039.814391 m 0.0000 776 | 10/39
11 h-m-p 0.0000 0.0000 98325.9583 ++ 4032.896978 m 0.0000 848 | 11/39
12 h-m-p 0.0000 0.0000 9921.1061 ++ 4025.143854 m 0.0000 919 | 12/39
13 h-m-p 0.0000 0.0000 7813.6601 ++ 4019.128774 m 0.0000 989 | 13/39
14 h-m-p 0.0000 0.0000 5624.9140 ++ 4014.862058 m 0.0000 1058 | 14/39
15 h-m-p 0.0000 0.0000 5993.8939 ++ 4013.839438 m 0.0000 1126 | 15/39
16 h-m-p 0.0000 0.0000 3105.4943 ++ 4013.541593 m 0.0000 1193 | 16/39
17 h-m-p 0.0000 0.0000 858.5067 ++ 4011.992724 m 0.0000 1259 | 17/39
18 h-m-p 0.0000 0.0003 368.8770 +++ 3982.599808 m 0.0003 1325 | 17/39
19 h-m-p 0.0000 0.0000 3345.4865 +CCCC 3971.362083 3 0.0000 1396 | 17/39
20 h-m-p 0.0000 0.0002 587.1954 YCYCCC 3964.338987 5 0.0001 1468 | 17/39
21 h-m-p 0.0001 0.0003 554.7413 CCCCC 3957.829680 4 0.0001 1540 | 17/39
22 h-m-p 0.0002 0.0010 154.0346 CYC 3955.808871 2 0.0002 1607 | 17/39
23 h-m-p 0.0000 0.0002 65.4316 +YYCCCC 3954.974481 5 0.0001 1680 | 17/39
24 h-m-p 0.0000 0.0009 196.6543 +YCC 3953.351673 2 0.0001 1748 | 17/39
25 h-m-p 0.0003 0.0017 57.4561 YCCCC 3948.235761 4 0.0007 1819 | 17/39
26 h-m-p 0.0001 0.0007 123.2678 CYCCC 3945.074914 4 0.0002 1890 | 17/39
27 h-m-p 0.0002 0.0008 51.8979 CYC 3944.756390 2 0.0002 1957 | 17/39
28 h-m-p 0.0003 0.0025 31.8406 YC 3944.227749 1 0.0006 2022 | 17/39
29 h-m-p 0.0004 0.0034 54.8300 YC 3943.951919 1 0.0002 2087 | 17/39
30 h-m-p 0.0006 0.0105 17.1982 C 3943.601262 0 0.0006 2151 | 17/39
31 h-m-p 0.0007 0.0076 16.0968 YCCC 3942.522406 3 0.0013 2220 | 17/39
32 h-m-p 0.0043 0.0376 4.9540 +YYC 3941.896952 2 0.0135 2287 | 17/39
33 h-m-p 0.0032 0.0159 13.5595 YCCC 3941.191535 3 0.0073 2356 | 17/39
34 h-m-p 0.0052 0.0561 18.9162 YCCC 3940.803332 3 0.0024 2425 | 17/39
35 h-m-p 0.0388 0.6279 1.1787 +YYC 3938.766971 2 0.1224 2492 | 17/39
36 h-m-p 0.0209 0.1047 4.8026 YYC 3937.453755 2 0.0165 2558 | 17/39
37 h-m-p 0.0088 0.0440 4.7268 YCC 3936.780445 2 0.0061 2625 | 17/39
38 h-m-p 0.0128 1.0228 2.2358 +YC 3936.405586 1 0.0837 2691 | 17/39
39 h-m-p 0.0908 2.7344 2.0600 CCC 3936.206350 2 0.0676 2759 | 17/39
40 h-m-p 1.2035 6.0173 0.0599 YC 3935.363996 1 0.9451 2824 | 17/39
41 h-m-p 1.2671 8.0000 0.0447 CCC 3934.912773 2 1.8480 2892 | 17/39
42 h-m-p 0.7565 8.0000 0.1091 +YYC 3934.397386 2 2.4165 2959 | 17/39
43 h-m-p 1.6000 8.0000 0.0835 CC 3934.202122 1 1.6000 3025 | 17/39
44 h-m-p 1.6000 8.0000 0.0142 CC 3934.052429 1 2.5524 3091 | 17/39
45 h-m-p 1.0058 8.0000 0.0359 YC 3933.904974 1 2.3275 3156 | 17/39
46 h-m-p 1.6000 8.0000 0.0386 YCCC 3933.696660 3 3.5715 3225 | 17/39
47 h-m-p 1.6000 8.0000 0.0228 YCCC 3933.325065 3 2.7693 3294 | 17/39
48 h-m-p 1.6000 8.0000 0.0144 CC 3933.119664 1 1.9923 3360 | 17/39
49 h-m-p 1.6000 8.0000 0.0144 CYC 3933.068825 2 1.7442 3427 | 17/39
50 h-m-p 1.6000 8.0000 0.0051 CC 3933.059494 1 1.8496 3493 | 17/39
51 h-m-p 1.6000 8.0000 0.0006 +YC 3933.047840 1 5.2147 3559 | 17/39
52 h-m-p 0.4823 8.0000 0.0063 ++CC 3932.993092 1 6.7478 3627 | 17/39
53 h-m-p 1.6000 8.0000 0.0079 +YC 3932.736493 1 7.0896 3693 | 17/39
54 h-m-p 1.3274 8.0000 0.0420 YCCC 3932.450770 3 2.6594 3762 | 17/39
55 h-m-p 1.6000 8.0000 0.0101 CC 3932.344897 1 1.4400 3828 | 17/39
56 h-m-p 0.8776 8.0000 0.0165 +YCC 3932.215852 2 2.3243 3896 | 17/39
57 h-m-p 1.6000 8.0000 0.0096 CC 3932.155673 1 1.9621 3962 | 17/39
58 h-m-p 1.6000 8.0000 0.0051 CC 3932.125029 1 1.7344 4028 | 17/39
59 h-m-p 1.3465 8.0000 0.0066 CC 3932.116201 1 1.5943 4094 | 17/39
60 h-m-p 1.6000 8.0000 0.0017 CC 3932.114041 1 2.0412 4160 | 17/39
61 h-m-p 1.6000 8.0000 0.0005 C 3932.113573 0 1.4896 4224 | 17/39
62 h-m-p 1.3383 8.0000 0.0005 C 3932.113534 0 1.6975 4288 | 17/39
63 h-m-p 1.6000 8.0000 0.0002 C 3932.113519 0 2.3004 4352 | 17/39
64 h-m-p 1.6000 8.0000 0.0002 C 3932.113518 0 1.4342 4416 | 17/39
65 h-m-p 1.6000 8.0000 0.0000 C 3932.113518 0 0.4000 4480 | 17/39
66 h-m-p 0.2732 8.0000 0.0000 C 3932.113518 0 0.0683 4544 | 17/39
67 h-m-p 0.0215 8.0000 0.0001 -----Y 3932.113518 0 0.0000 4613
Out..
lnL = -3932.113518
4614 lfun, 50754 eigenQcodon, 1661040 P(t)
end of tree file.
Time used: 20:38
Model 8: beta&w>1
TREE # 1
(1, 14, (((((10, 7), 5), (13, 16, 6)), (18, 19, (21, 3, 4), 23, 9)), ((11, 20), (12, 15, 17, (2, 22, 8), 24)))); MP score: 336
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
26
0.077772 0.043616 0.029578 0.055041 0.032470 0.109188 0.044497 0.073248 0.014267 0.105188 0.053264 0.032931 0.016130 0.068801 0.070724 0.042475 0.044007 0.071510 0.051917 0.107977 0.080324 0.046477 0.048501 0.046709 0.075111 0.056461 0.048265 0.012215 0.094460 0.088196 0.014945 0.054457 0.030995 0.034169 0.020520 0.013465 2.798021 0.900000 0.660364 1.877445 1.300000
ntime & nrate & np: 36 2 41
Bounds (np=41):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 7.368705
np = 41
lnL0 = -4477.339616
Iterating by ming2
Initial: fx= 4477.339616
x= 0.07777 0.04362 0.02958 0.05504 0.03247 0.10919 0.04450 0.07325 0.01427 0.10519 0.05326 0.03293 0.01613 0.06880 0.07072 0.04248 0.04401 0.07151 0.05192 0.10798 0.08032 0.04648 0.04850 0.04671 0.07511 0.05646 0.04826 0.01221 0.09446 0.08820 0.01494 0.05446 0.03100 0.03417 0.02052 0.01347 2.79802 0.90000 0.66036 1.87745 1.30000
1 h-m-p 0.0000 0.0000 2500.2402 ++ 4330.670232 m 0.0000 87 | 1/41
2 h-m-p 0.0000 0.0000 2990.8128 ++ 4319.730580 m 0.0000 172 | 2/41
3 h-m-p 0.0000 0.0000 35324.1224 ++ 4311.498604 m 0.0000 256 | 3/41
4 h-m-p 0.0000 0.0000 2512.7660 ++ 4283.050224 m 0.0000 339 | 4/41
5 h-m-p 0.0000 0.0000 1389.7515 ++ 4225.609776 m 0.0000 421 | 5/41
6 h-m-p 0.0000 0.0000 1962.2523 ++ 4215.069898 m 0.0000 502 | 6/41
7 h-m-p 0.0000 0.0000 20618.3127 ++ 4207.842924 m 0.0000 582 | 7/41
8 h-m-p 0.0000 0.0000 83631.6716 ++ 4167.677131 m 0.0000 661 | 8/41
9 h-m-p 0.0000 0.0000 5094.2197 ++ 4160.478040 m 0.0000 739 | 9/41
10 h-m-p 0.0000 0.0000 6285.3603 ++ 4150.125223 m 0.0000 816 | 10/41
11 h-m-p 0.0000 0.0000 16349.5205 ++ 4142.569506 m 0.0000 892 | 11/41
12 h-m-p 0.0000 0.0000 26991.1253 ++ 4130.736328 m 0.0000 967 | 12/41
13 h-m-p 0.0000 0.0000 32681.2122 ++ 4106.209834 m 0.0000 1041 | 13/41
14 h-m-p 0.0000 0.0000 20131.1218 ++ 4089.290651 m 0.0000 1114 | 14/41
15 h-m-p 0.0000 0.0000 34038.0221 ++ 4069.336288 m 0.0000 1186 | 15/41
16 h-m-p 0.0000 0.0000 10341.5290 ++ 4058.544004 m 0.0000 1257 | 16/41
17 h-m-p 0.0000 0.0000 37538.0295 ++ 4042.618119 m 0.0000 1327 | 17/41
18 h-m-p 0.0000 0.0000 32656895.6270 ++ 4008.041724 m 0.0000 1396 | 17/41
19 h-m-p 0.0000 0.0000 7924.4597 +CYYCYCYC 3995.736534 7 0.0000 1476 | 17/41
20 h-m-p 0.0000 0.0000 3486.4654 +YYCCCC 3986.074698 5 0.0000 1553 | 17/41
21 h-m-p 0.0000 0.0001 172.9446 +YYCYC 3984.874546 4 0.0001 1627 | 17/41
22 h-m-p 0.0000 0.0003 440.7754 +CYCCC 3979.930780 4 0.0001 1703 | 17/41
23 h-m-p 0.0003 0.0013 120.5775 +YCCC 3974.607727 3 0.0007 1777 | 17/41
24 h-m-p 0.0003 0.0015 147.6770 CCCCC 3968.720337 4 0.0005 1853 | 17/41
25 h-m-p 0.0004 0.0022 49.7516 CCCC 3966.244610 3 0.0007 1927 | 17/41
26 h-m-p 0.0004 0.0021 76.0101 CCCCC 3964.226285 4 0.0005 2003 | 17/41
27 h-m-p 0.0008 0.0044 49.1780 CCCC 3962.821663 3 0.0009 2077 | 17/41
28 h-m-p 0.0004 0.0019 90.5755 CCCC 3961.770692 3 0.0004 2151 | 17/41
29 h-m-p 0.0012 0.0100 32.8588 +YCCCCC 3956.846958 5 0.0052 2229 | 17/41
30 h-m-p 0.0074 0.0369 22.4580 +YYYYC 3943.606927 4 0.0291 2302 | 17/41
31 h-m-p 0.0006 0.0030 74.7751 +YCYCCC 3941.924585 5 0.0017 2379 | 17/41
32 h-m-p 0.0011 0.0053 20.0024 CYC 3941.694051 2 0.0010 2450 | 17/41
33 h-m-p 0.0098 0.1390 1.9957 YCCC 3941.020839 3 0.0218 2523 | 17/41
34 h-m-p 0.0276 0.6108 1.5752 +CYC 3938.584950 2 0.1013 2595 | 17/41
35 h-m-p 0.1097 1.0201 1.4549 YCCC 3934.569252 3 0.1824 2668 | 17/41
36 h-m-p 0.0581 0.2907 1.4697 CCC 3934.101048 2 0.0650 2740 | 17/41
37 h-m-p 0.0513 1.1273 1.8618 YCCC 3933.803871 3 0.0907 2813 | 17/41
38 h-m-p 0.1463 1.3597 1.1545 YCC 3933.540358 2 0.1207 2884 | 17/41
39 h-m-p 0.2215 2.1409 0.6292 CC 3933.265586 1 0.2502 2954 | 17/41
40 h-m-p 1.6000 8.0000 0.0479 YC 3933.076056 1 0.7076 3023 | 17/41
41 h-m-p 0.9541 8.0000 0.0355 CYC 3932.947372 2 0.8586 3094 | 17/41
42 h-m-p 0.4354 8.0000 0.0701 CC 3932.864490 1 0.6821 3164 | 17/41
43 h-m-p 0.6557 8.0000 0.0729 CC 3932.774582 1 0.7682 3234 | 17/41
44 h-m-p 0.9617 8.0000 0.0582 CC 3932.714079 1 0.8073 3304 | 17/41
45 h-m-p 1.1624 8.0000 0.0404 CC 3932.648506 1 1.3606 3374 | 17/41
46 h-m-p 0.7941 8.0000 0.0693 CC 3932.559945 1 0.9349 3444 | 17/41
47 h-m-p 1.1172 8.0000 0.0580 CCC 3932.452919 2 1.4110 3516 | 17/41
48 h-m-p 0.5830 8.0000 0.1403 YC 3932.284806 1 1.0903 3585 | 17/41
49 h-m-p 0.8875 5.3853 0.1724 CC 3932.062240 1 1.3811 3655 | 17/41
50 h-m-p 0.8179 4.0894 0.1671 YCCC 3931.821924 3 1.6088 3728 | 17/41
51 h-m-p 1.6000 8.0000 0.0329 C 3931.718843 0 1.6293 3796 | 17/41
52 h-m-p 1.6000 8.0000 0.0316 CY 3931.676293 1 1.5455 3866 | 17/41
53 h-m-p 1.6000 8.0000 0.0056 CC 3931.643335 1 1.9604 3936 | 17/41
54 h-m-p 1.6000 8.0000 0.0033 ++ 3931.444548 m 8.0000 4004 | 17/41
55 h-m-p 0.1758 8.0000 0.1494 ++YCC 3930.862662 2 4.8405 4077 | 17/41
56 h-m-p 1.6000 8.0000 0.0851 CYC 3930.690183 2 1.4990 4148 | 17/41
57 h-m-p 1.6000 8.0000 0.0592 YC 3930.574032 1 3.7920 4217 | 17/41
58 h-m-p 1.6000 8.0000 0.0242 C 3930.542552 0 1.5534 4285 | 17/41
59 h-m-p 1.6000 8.0000 0.0145 CC 3930.533456 1 1.9513 4355 | 17/41
60 h-m-p 1.6000 8.0000 0.0020 YC 3930.532160 1 1.2363 4424 | 17/41
61 h-m-p 1.6000 8.0000 0.0012 Y 3930.532126 0 1.0332 4492 | 17/41
62 h-m-p 1.6000 8.0000 0.0005 C 3930.532123 0 1.9353 4560 | 17/41
63 h-m-p 1.6000 8.0000 0.0002 +Y 3930.532117 0 4.9130 4629 | 17/41
64 h-m-p 1.6000 8.0000 0.0001 ++ 3930.532084 m 8.0000 4697 | 17/41
65 h-m-p 0.4653 8.0000 0.0016 +YC 3930.531887 1 3.9781 4767 | 17/41
66 h-m-p 1.3523 8.0000 0.0048 ++ 3930.529595 m 8.0000 4835 | 17/41
67 h-m-p 0.0646 5.2677 0.5958 ++CCC 3930.506195 2 1.3464 4909 | 17/41
68 h-m-p 1.6000 8.0000 0.1557 CC 3930.500339 1 1.2573 4979 | 17/41
69 h-m-p 0.7358 8.0000 0.2660 +YC 3930.494920 1 1.9308 5049 | 17/41
70 h-m-p 1.6000 8.0000 0.1688 +YC 3930.491292 1 4.3099 5119 | 17/41
71 h-m-p 1.6000 8.0000 0.1854 YC 3930.490629 1 0.8915 5188 | 17/41
72 h-m-p 1.6000 8.0000 0.0838 C 3930.490376 0 1.3817 5256 | 17/41
73 h-m-p 0.7172 8.0000 0.1615 YC 3930.490204 1 1.6272 5325 | 17/41
74 h-m-p 1.6000 8.0000 0.0281 Y 3930.490150 0 1.0473 5393 | 17/41
75 h-m-p 0.6670 8.0000 0.0441 +C 3930.490132 0 2.2809 5462 | 17/41
76 h-m-p 0.7375 8.0000 0.1364 C 3930.490131 0 0.2424 5530 | 17/41
77 h-m-p 1.6000 8.0000 0.0140 Y 3930.490129 0 1.2788 5598 | 17/41
78 h-m-p 1.6000 8.0000 0.0043 Y 3930.490128 0 3.1228 5666 | 17/41
79 h-m-p 1.6000 8.0000 0.0083 -Y 3930.490128 0 0.1000 5735 | 17/41
80 h-m-p 1.2955 8.0000 0.0006 --Y 3930.490128 0 0.0202 5805 | 17/41
81 h-m-p 0.0760 8.0000 0.0002 --------------.. | 17/41
82 h-m-p 0.0020 0.9939 0.0593 ------------
Out..
lnL = -3930.490128
5964 lfun, 71568 eigenQcodon, 2361744 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -3957.094698 S = -3829.967260 -128.565355
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 246 patterns 40:23
did 20 / 246 patterns 40:23
did 30 / 246 patterns 40:23
did 40 / 246 patterns 40:23
did 50 / 246 patterns 40:24
did 60 / 246 patterns 40:24
did 70 / 246 patterns 40:24
did 80 / 246 patterns 40:24
did 90 / 246 patterns 40:24
did 100 / 246 patterns 40:25
did 110 / 246 patterns 40:25
did 120 / 246 patterns 40:25
did 130 / 246 patterns 40:25
did 140 / 246 patterns 40:25
did 150 / 246 patterns 40:26
did 160 / 246 patterns 40:26
did 170 / 246 patterns 40:26
did 180 / 246 patterns 40:26
did 190 / 246 patterns 40:26
did 200 / 246 patterns 40:27
did 210 / 246 patterns 40:27
did 220 / 246 patterns 40:27
did 230 / 246 patterns 40:27
did 240 / 246 patterns 40:27
did 246 / 246 patterns 40:27end of tree file.
Time used: 40:28
The loglikelihoods for models M1, M2, M7 and M8 are -3930.529178 -3930.520906 -3932.113518 -3930.490128 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
681_nsp14_VIPR_ALG4_381354058_18128_19690_1_NA_NA_Rat_Murine_coronavirus CTTNLFKDCSKSYIGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFK
A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFK
JHM_WU_nsp14_VIPR_ALG4_397136020_18154_19716_1_1947_08_14_USA_Unknown_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTYSRLISLMGFK
JHM_WU_Dns2_nsp14_VIPR_ALG4_397136010_18150_19712_1_1947_08_14_USA_Unknown_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTYSRLISLMGFK
MHV_1_nsp14_VIPR_ALG4_225403254_18106_19668_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFK
MHV_2_nsp14_VIPR_ALG4_6625761_17999_19561_1_NA_NA_Unknown_Murine_coronavirus CTTNLFKDCSRSYAGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFK
MHV_3_nsp14_VIPR_ALG4_225403266_18105_19667_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFK
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp14_VIPR_ALG4_530290989_18140_19702_1_2012_10_25_USA_Mouse_Murine_coronavirus CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFK
MHV_JHM_IA_nsp14_VIPR_ALG4_225403291_18150_19712_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTYSRLISLMGFK
MHV_MI_nsp14_VIPR_ALG4_293330423_18090_19652_1_1994_Australia_Mouse_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFK
MHV_S_3239_17_nsp14_VIPR_ALG4_380706996_18165_19727_1_NA_NA_Unknown_Murine_coronavirus CTTNLFKDCSRSYEGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFK
ML_10_nsp14_VIPR_ALG4_7769353_18152_19714_1_NA_NA_Unknown_Murine_coronavirus CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVSYSRLISLMGFK
ML_11_nsp14_VIPR_ALG4_7739595_17999_19561_1_NA_NA_Unknown_Murine_coronavirus CTTNLFKDCSRSYAGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFK
Parker_ORF1ab_YP_009924380_1_NA_NA_Rat_Murine_coronavirus CTTNLFKDCSKSYDGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSSVTYSRLISLMGFK
RA59_R13_nsp14_VIPR_ALG4_225403203_18138_19700_1_2006_01_01_USA_Mouse_Murine_coronavirus CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFK
Penn_97_1_nsp14_VIPR_ALG4_7769342_17996_19558_1_NA_NA_Unknown_Murine_coronavirus CTTNLFKDCSRSYAGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFK
RA59_SJHM_nsp14_VIPR_ALG4_225403218_18122_19684_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFK
RJHM_A_nsp14_VIPR_ALG4_225403212_18128_19690_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTYSRLISLMGFK
SA59_RJHM_nsp14_VIPR_ALG4_225403240_18128_19690_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTYSRLISLMGFK
S_nsp14_VIPR_ALG4_298199703_18165_19727_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSRSYEGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFK
UNKNOWN_AC_000192_nsp14_VIPR_ALG4_YP_209229_2_18178_19734_1_NA_NA_Unknown_Murine_coronavirus CTTNLFKDCSKSYVGIPP--CAFLLAVDDKYKVSGNLAVCLNVADSAVTYSRLISLMGFK
inf_MHV_A59_nsp14_VIPR_ALG4_225403276_18136_19698_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFK
repJHM_RA59_nsp14_VIPR_ALG4_225403293_18111_19673_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTYSRLISLMGFK
repA59_RJHM_nsp14_VIPR_ALG4_225403235_18133_19695_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFK
**********:** * * .. :*********.*:**********:*:***********
681_nsp14_VIPR_ALG4_381354058_18128_19690_1_NA_NA_Rat_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEA
A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEA
JHM_WU_nsp14_VIPR_ALG4_397136020_18154_19716_1_1947_08_14_USA_Unknown_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEA
JHM_WU_Dns2_nsp14_VIPR_ALG4_397136010_18150_19712_1_1947_08_14_USA_Unknown_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEA
MHV_1_nsp14_VIPR_ALG4_225403254_18106_19668_1_NA_USA_Mouse_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEA
MHV_2_nsp14_VIPR_ALG4_6625761_17999_19561_1_NA_NA_Unknown_Murine_coronavirus LDLTLDGYCKLFITRDEAIRRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEA
MHV_3_nsp14_VIPR_ALG4_225403266_18105_19667_1_NA_USA_Mouse_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEA
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp14_VIPR_ALG4_530290989_18140_19702_1_2012_10_25_USA_Mouse_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEA
MHV_JHM_IA_nsp14_VIPR_ALG4_225403291_18150_19712_1_NA_USA_Mouse_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEA
MHV_MI_nsp14_VIPR_ALG4_293330423_18090_19652_1_1994_Australia_Mouse_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEA
MHV_S_3239_17_nsp14_VIPR_ALG4_380706996_18165_19727_1_NA_NA_Unknown_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEA
ML_10_nsp14_VIPR_ALG4_7769353_18152_19714_1_NA_NA_Unknown_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEA
ML_11_nsp14_VIPR_ALG4_7739595_17999_19561_1_NA_NA_Unknown_Murine_coronavirus LDLTLDGYCKLFITRDEAIRRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEA
Parker_ORF1ab_YP_009924380_1_NA_NA_Rat_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEA
RA59_R13_nsp14_VIPR_ALG4_225403203_18138_19700_1_2006_01_01_USA_Mouse_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEA
Penn_97_1_nsp14_VIPR_ALG4_7769342_17996_19558_1_NA_NA_Unknown_Murine_coronavirus LDLTLDGYCKLFITRDEAIRRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEA
RA59_SJHM_nsp14_VIPR_ALG4_225403218_18122_19684_1_NA_USA_Mouse_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEA
RJHM_A_nsp14_VIPR_ALG4_225403212_18128_19690_1_NA_USA_Mouse_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEA
SA59_RJHM_nsp14_VIPR_ALG4_225403240_18128_19690_1_NA_USA_Mouse_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEA
S_nsp14_VIPR_ALG4_298199703_18165_19727_1_NA_USA_Mouse_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEA
UNKNOWN_AC_000192_nsp14_VIPR_ALG4_YP_209229_2_18178_19734_1_NA_NA_Unknown_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEA
inf_MHV_A59_nsp14_VIPR_ALG4_225403276_18136_19698_1_NA_USA_Mouse_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEA
repJHM_RA59_nsp14_VIPR_ALG4_225403293_18111_19673_1_NA_USA_Mouse_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEA
repA59_RJHM_nsp14_VIPR_ALG4_225403235_18133_19695_1_NA_USA_Mouse_Murine_coronavirus LDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEA
*******************:*************** ************************
681_nsp14_VIPR_ALG4_381354058_18128_19690_1_NA_NA_Rat_Murine_coronavirus TGMFAERDGYVFKKAAARAPPGEQFKHLVPLLSRGQKWDEVRIRIVPMVSDHLVDLADSV
A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus TGMFAERDGYVFKKAAARAPPGEQFKHLIPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
JHM_WU_nsp14_VIPR_ALG4_397136020_18154_19716_1_1947_08_14_USA_Unknown_Murine_coronavirus TGMFAERDGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
JHM_WU_Dns2_nsp14_VIPR_ALG4_397136010_18150_19712_1_1947_08_14_USA_Unknown_Murine_coronavirus TGMFAERDGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
MHV_1_nsp14_VIPR_ALG4_225403254_18106_19668_1_NA_USA_Mouse_Murine_coronavirus TGMFAERDGYVFKKAVARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
MHV_2_nsp14_VIPR_ALG4_6625761_17999_19561_1_NA_NA_Unknown_Murine_coronavirus TGMFAERDGYVFKKAVARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
MHV_3_nsp14_VIPR_ALG4_225403266_18105_19667_1_NA_USA_Mouse_Murine_coronavirus TGMFAERDGYVFKKAVARAPPGEQFKHLVPLMSRGQKWEVVRIRIVQMLSDHLVDLADSV
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp14_VIPR_ALG4_530290989_18140_19702_1_2012_10_25_USA_Mouse_Murine_coronavirus TGMFAERDGYVFKKAAARAPPGEQFKHLIPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
MHV_JHM_IA_nsp14_VIPR_ALG4_225403291_18150_19712_1_NA_USA_Mouse_Murine_coronavirus TGMFAERDGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
MHV_MI_nsp14_VIPR_ALG4_293330423_18090_19652_1_1994_Australia_Mouse_Murine_coronavirus TGMFAERDGYVFKKAAARAPPGEQFKHLIPLMARGQKWDVVRIRIVQMLSDHLVDLADSV
MHV_S_3239_17_nsp14_VIPR_ALG4_380706996_18165_19727_1_NA_NA_Unknown_Murine_coronavirus TGMFAERDGYVFKKAVARAPPGDQFKHLVPLMSRGQKWDVVRTRIVQMLSDHLVDLADSV
ML_10_nsp14_VIPR_ALG4_7769353_18152_19714_1_NA_NA_Unknown_Murine_coronavirus TGMFAERDGYVFKKAAARAPPGEQFKHLIPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
ML_11_nsp14_VIPR_ALG4_7739595_17999_19561_1_NA_NA_Unknown_Murine_coronavirus TGMFAERDGYVFKKAVARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
Parker_ORF1ab_YP_009924380_1_NA_NA_Rat_Murine_coronavirus TGMFAEREGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
RA59_R13_nsp14_VIPR_ALG4_225403203_18138_19700_1_2006_01_01_USA_Mouse_Murine_coronavirus TGMFAERDGYVFKKAAARAPPGEQFKHLIPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
Penn_97_1_nsp14_VIPR_ALG4_7769342_17996_19558_1_NA_NA_Unknown_Murine_coronavirus TGMFAERDGYVFKKAVARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
RA59_SJHM_nsp14_VIPR_ALG4_225403218_18122_19684_1_NA_USA_Mouse_Murine_coronavirus TGMFAERDGYVFKKAAARAPPGEQFKHLIPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
RJHM_A_nsp14_VIPR_ALG4_225403212_18128_19690_1_NA_USA_Mouse_Murine_coronavirus TGMFAERDGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
SA59_RJHM_nsp14_VIPR_ALG4_225403240_18128_19690_1_NA_USA_Mouse_Murine_coronavirus TGMFAERDGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
S_nsp14_VIPR_ALG4_298199703_18165_19727_1_NA_USA_Mouse_Murine_coronavirus TGMFAERDGYVFKKAVARAPPGDQFKHLVPLMSRGQKWDVVRTRIVQMLSDHLVDLADSV
UNKNOWN_AC_000192_nsp14_VIPR_ALG4_YP_209229_2_18178_19734_1_NA_NA_Unknown_Murine_coronavirus TGMFAERDGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
inf_MHV_A59_nsp14_VIPR_ALG4_225403276_18136_19698_1_NA_USA_Mouse_Murine_coronavirus TGMFAERDGYVFKKAAARAPPGEQFKHLIPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
repJHM_RA59_nsp14_VIPR_ALG4_225403293_18111_19673_1_NA_USA_Mouse_Murine_coronavirus TGMFAERDGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
repA59_RJHM_nsp14_VIPR_ALG4_225403235_18133_19695_1_NA_USA_Mouse_Murine_coronavirus TGMFAERDGYVFKKAAARAPPGEQFKHLIPLMSRGQKWDVVRIRIVQMLSDHLVDLADSV
*******:*******.******:*****:**::*****: ** *** *:***********
681_nsp14_VIPR_ALG4_381354058_18128_19690_1_NA_NA_Rat_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus VLVTWAASFELTCLRYFAKVGREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
JHM_WU_nsp14_VIPR_ALG4_397136020_18154_19716_1_1947_08_14_USA_Unknown_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
JHM_WU_Dns2_nsp14_VIPR_ALG4_397136010_18150_19712_1_1947_08_14_USA_Unknown_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
MHV_1_nsp14_VIPR_ALG4_225403254_18106_19668_1_NA_USA_Mouse_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVMCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
MHV_2_nsp14_VIPR_ALG4_6625761_17999_19561_1_NA_NA_Unknown_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
MHV_3_nsp14_VIPR_ALG4_225403266_18105_19667_1_NA_USA_Mouse_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVMCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp14_VIPR_ALG4_530290989_18140_19702_1_2012_10_25_USA_Mouse_Murine_coronavirus VLVTWAASFELTCLRYFAKVGREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
MHV_JHM_IA_nsp14_VIPR_ALG4_225403291_18150_19712_1_NA_USA_Mouse_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
MHV_MI_nsp14_VIPR_ALG4_293330423_18090_19652_1_1994_Australia_Mouse_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
MHV_S_3239_17_nsp14_VIPR_ALG4_380706996_18165_19727_1_NA_NA_Unknown_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
ML_10_nsp14_VIPR_ALG4_7769353_18152_19714_1_NA_NA_Unknown_Murine_coronavirus VLVTWAASFELTCLRYFAKVGREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
ML_11_nsp14_VIPR_ALG4_7739595_17999_19561_1_NA_NA_Unknown_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
Parker_ORF1ab_YP_009924380_1_NA_NA_Rat_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
RA59_R13_nsp14_VIPR_ALG4_225403203_18138_19700_1_2006_01_01_USA_Mouse_Murine_coronavirus VLVTWAASFELTCLRYFAKVGREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
Penn_97_1_nsp14_VIPR_ALG4_7769342_17996_19558_1_NA_NA_Unknown_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
RA59_SJHM_nsp14_VIPR_ALG4_225403218_18122_19684_1_NA_USA_Mouse_Murine_coronavirus VLVTWAASFELTCLRYFAKVGREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
RJHM_A_nsp14_VIPR_ALG4_225403212_18128_19690_1_NA_USA_Mouse_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
SA59_RJHM_nsp14_VIPR_ALG4_225403240_18128_19690_1_NA_USA_Mouse_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
S_nsp14_VIPR_ALG4_298199703_18165_19727_1_NA_USA_Mouse_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
UNKNOWN_AC_000192_nsp14_VIPR_ALG4_YP_209229_2_18178_19734_1_NA_NA_Unknown_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
inf_MHV_A59_nsp14_VIPR_ALG4_225403276_18136_19698_1_NA_USA_Mouse_Murine_coronavirus VLVTWAASFELTCLRYFAKVGREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
repJHM_RA59_nsp14_VIPR_ALG4_225403293_18111_19673_1_NA_USA_Mouse_Murine_coronavirus VLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
repA59_RJHM_nsp14_VIPR_ALG4_225403235_18133_19695_1_NA_USA_Mouse_Murine_coronavirus VLVTWAASFELTCLRYFAKVGREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLI
*********************:**:****.******************************
681_nsp14_VIPR_ALG4_381354058_18128_19690_1_NA_NA_Rat_Murine_coronavirus VDIEQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
JHM_WU_nsp14_VIPR_ALG4_397136020_18154_19716_1_1947_08_14_USA_Unknown_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
JHM_WU_Dns2_nsp14_VIPR_ALG4_397136010_18150_19712_1_1947_08_14_USA_Unknown_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
MHV_1_nsp14_VIPR_ALG4_225403254_18106_19668_1_NA_USA_Mouse_Murine_coronavirus VDIQQWGYTGSLTSNHDQICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
MHV_2_nsp14_VIPR_ALG4_6625761_17999_19561_1_NA_NA_Unknown_Murine_coronavirus VDIQQWGYTGSLTSNHDLICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWSLEYPIISN
MHV_3_nsp14_VIPR_ALG4_225403266_18105_19667_1_NA_USA_Mouse_Murine_coronavirus VDIQQWGYTGSLTSNHDQICSMHKGAHVASSDAIMTRCLAVHDCFCKSVNWNVEYPIISN
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp14_VIPR_ALG4_530290989_18140_19702_1_2012_10_25_USA_Mouse_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
MHV_JHM_IA_nsp14_VIPR_ALG4_225403291_18150_19712_1_NA_USA_Mouse_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
MHV_MI_nsp14_VIPR_ALG4_293330423_18090_19652_1_1994_Australia_Mouse_Murine_coronavirus VDIQQWGYTGSLTSNHDQICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNVEYPIISN
MHV_S_3239_17_nsp14_VIPR_ALG4_380706996_18165_19727_1_NA_NA_Unknown_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKFVNWNLEYPIISN
ML_10_nsp14_VIPR_ALG4_7769353_18152_19714_1_NA_NA_Unknown_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
ML_11_nsp14_VIPR_ALG4_7739595_17999_19561_1_NA_NA_Unknown_Murine_coronavirus VDIQQWGYTGSLTSNHDLICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWSLEYPIISN
Parker_ORF1ab_YP_009924380_1_NA_NA_Rat_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIILN
RA59_R13_nsp14_VIPR_ALG4_225403203_18138_19700_1_2006_01_01_USA_Mouse_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
Penn_97_1_nsp14_VIPR_ALG4_7769342_17996_19558_1_NA_NA_Unknown_Murine_coronavirus VDIQQWGYTGSLTSNHDLICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWSLEYPIISN
RA59_SJHM_nsp14_VIPR_ALG4_225403218_18122_19684_1_NA_USA_Mouse_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
RJHM_A_nsp14_VIPR_ALG4_225403212_18128_19690_1_NA_USA_Mouse_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
SA59_RJHM_nsp14_VIPR_ALG4_225403240_18128_19690_1_NA_USA_Mouse_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
S_nsp14_VIPR_ALG4_298199703_18165_19727_1_NA_USA_Mouse_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKFVNWNLEYPIISN
UNKNOWN_AC_000192_nsp14_VIPR_ALG4_YP_209229_2_18178_19734_1_NA_NA_Unknown_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
inf_MHV_A59_nsp14_VIPR_ALG4_225403276_18136_19698_1_NA_USA_Mouse_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
repJHM_RA59_nsp14_VIPR_ALG4_225403293_18111_19673_1_NA_USA_Mouse_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
repA59_RJHM_nsp14_VIPR_ALG4_225403235_18133_19695_1_NA_USA_Mouse_Murine_coronavirus VDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISN
***:************* ***:************************* ***.:***** *
681_nsp14_VIPR_ALG4_381354058_18128_19690_1_NA_NA_Rat_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
JHM_WU_nsp14_VIPR_ALG4_397136020_18154_19716_1_1947_08_14_USA_Unknown_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
JHM_WU_Dns2_nsp14_VIPR_ALG4_397136010_18150_19712_1_1947_08_14_USA_Unknown_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
MHV_1_nsp14_VIPR_ALG4_225403254_18106_19668_1_NA_USA_Mouse_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
MHV_2_nsp14_VIPR_ALG4_6625761_17999_19561_1_NA_NA_Unknown_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
MHV_3_nsp14_VIPR_ALG4_225403266_18105_19667_1_NA_USA_Mouse_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp14_VIPR_ALG4_530290989_18140_19702_1_2012_10_25_USA_Mouse_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
MHV_JHM_IA_nsp14_VIPR_ALG4_225403291_18150_19712_1_NA_USA_Mouse_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
MHV_MI_nsp14_VIPR_ALG4_293330423_18090_19652_1_1994_Australia_Mouse_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
MHV_S_3239_17_nsp14_VIPR_ALG4_380706996_18165_19727_1_NA_NA_Unknown_Murine_coronavirus EVSVNASCRSLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
ML_10_nsp14_VIPR_ALG4_7769353_18152_19714_1_NA_NA_Unknown_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
ML_11_nsp14_VIPR_ALG4_7739595_17999_19561_1_NA_NA_Unknown_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
Parker_ORF1ab_YP_009924380_1_NA_NA_Rat_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
RA59_R13_nsp14_VIPR_ALG4_225403203_18138_19700_1_2006_01_01_USA_Mouse_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
Penn_97_1_nsp14_VIPR_ALG4_7769342_17996_19558_1_NA_NA_Unknown_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
RA59_SJHM_nsp14_VIPR_ALG4_225403218_18122_19684_1_NA_USA_Mouse_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
RJHM_A_nsp14_VIPR_ALG4_225403212_18128_19690_1_NA_USA_Mouse_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
SA59_RJHM_nsp14_VIPR_ALG4_225403240_18128_19690_1_NA_USA_Mouse_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
S_nsp14_VIPR_ALG4_298199703_18165_19727_1_NA_USA_Mouse_Murine_coronavirus EVSVNASCRSLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
UNKNOWN_AC_000192_nsp14_VIPR_ALG4_YP_209229_2_18178_19734_1_NA_NA_Unknown_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
inf_MHV_A59_nsp14_VIPR_ALG4_225403276_18136_19698_1_NA_USA_Mouse_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
repJHM_RA59_nsp14_VIPR_ALG4_225403293_18111_19673_1_NA_USA_Mouse_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
repA59_RJHM_nsp14_VIPR_ALG4_225403235_18133_19695_1_NA_USA_Mouse_Murine_coronavirus EVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQF
*****:*** **************************************************
681_nsp14_VIPR_ALG4_381354058_18128_19690_1_NA_NA_Rat_Murine_coronavirus VYKYEAHKDLFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
JHM_WU_nsp14_VIPR_ALG4_397136020_18154_19716_1_1947_08_14_USA_Unknown_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLSKLNLPGCNGGSLYVNKHAF
JHM_WU_Dns2_nsp14_VIPR_ALG4_397136010_18150_19712_1_1947_08_14_USA_Unknown_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLSKLNLPGCNGGSLYVNKHAF
MHV_1_nsp14_VIPR_ALG4_225403254_18106_19668_1_NA_USA_Mouse_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
MHV_2_nsp14_VIPR_ALG4_6625761_17999_19561_1_NA_NA_Unknown_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
MHV_3_nsp14_VIPR_ALG4_225403266_18105_19667_1_NA_USA_Mouse_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp14_VIPR_ALG4_530290989_18140_19702_1_2012_10_25_USA_Mouse_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
MHV_JHM_IA_nsp14_VIPR_ALG4_225403291_18150_19712_1_NA_USA_Mouse_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLSKLNLPGCNGGSLYVNKHAF
MHV_MI_nsp14_VIPR_ALG4_293330423_18090_19652_1_1994_Australia_Mouse_Murine_coronavirus VYKYEAHKDLFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
MHV_S_3239_17_nsp14_VIPR_ALG4_380706996_18165_19727_1_NA_NA_Unknown_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
ML_10_nsp14_VIPR_ALG4_7769353_18152_19714_1_NA_NA_Unknown_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
ML_11_nsp14_VIPR_ALG4_7739595_17999_19561_1_NA_NA_Unknown_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
Parker_ORF1ab_YP_009924380_1_NA_NA_Rat_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
RA59_R13_nsp14_VIPR_ALG4_225403203_18138_19700_1_2006_01_01_USA_Mouse_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
Penn_97_1_nsp14_VIPR_ALG4_7769342_17996_19558_1_NA_NA_Unknown_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
RA59_SJHM_nsp14_VIPR_ALG4_225403218_18122_19684_1_NA_USA_Mouse_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
RJHM_A_nsp14_VIPR_ALG4_225403212_18128_19690_1_NA_USA_Mouse_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLSKLNLPGCNGGSLYVNKHAF
SA59_RJHM_nsp14_VIPR_ALG4_225403240_18128_19690_1_NA_USA_Mouse_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLSKLNLPGCNGGSLYVNKHAF
S_nsp14_VIPR_ALG4_298199703_18165_19727_1_NA_USA_Mouse_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
UNKNOWN_AC_000192_nsp14_VIPR_ALG4_YP_209229_2_18178_19734_1_NA_NA_Unknown_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLSKLNLPGCNGGSLYVNKHAF
inf_MHV_A59_nsp14_VIPR_ALG4_225403276_18136_19698_1_NA_USA_Mouse_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
repJHM_RA59_nsp14_VIPR_ALG4_225403293_18111_19673_1_NA_USA_Mouse_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLSKLNLPGCNGGSLYVNKHAF
repA59_RJHM_nsp14_VIPR_ALG4_225403235_18133_19695_1_NA_USA_Mouse_Murine_coronavirus VYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAF
********* ******************************.*******************
681_nsp14_VIPR_ALG4_381354058_18128_19690_1_NA_NA_Rat_Murine_coronavirus HTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMDSKQVDYVPLRSATCITRCNLGGAVCLK
A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus HTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
JHM_WU_nsp14_VIPR_ALG4_397136020_18154_19716_1_1947_08_14_USA_Unknown_Murine_coronavirus HTNPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
JHM_WU_Dns2_nsp14_VIPR_ALG4_397136010_18150_19712_1_1947_08_14_USA_Unknown_Murine_coronavirus HTNPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
MHV_1_nsp14_VIPR_ALG4_225403254_18106_19668_1_NA_USA_Mouse_Murine_coronavirus HTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
MHV_2_nsp14_VIPR_ALG4_6625761_17999_19561_1_NA_NA_Unknown_Murine_coronavirus HTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
MHV_3_nsp14_VIPR_ALG4_225403266_18105_19667_1_NA_USA_Mouse_Murine_coronavirus HTIPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCVK
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp14_VIPR_ALG4_530290989_18140_19702_1_2012_10_25_USA_Mouse_Murine_coronavirus HTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
MHV_JHM_IA_nsp14_VIPR_ALG4_225403291_18150_19712_1_NA_USA_Mouse_Murine_coronavirus HTNPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
MHV_MI_nsp14_VIPR_ALG4_293330423_18090_19652_1_1994_Australia_Mouse_Murine_coronavirus HTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCVK
MHV_S_3239_17_nsp14_VIPR_ALG4_380706996_18165_19727_1_NA_NA_Unknown_Murine_coronavirus HTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
ML_10_nsp14_VIPR_ALG4_7769353_18152_19714_1_NA_NA_Unknown_Murine_coronavirus HTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
ML_11_nsp14_VIPR_ALG4_7739595_17999_19561_1_NA_NA_Unknown_Murine_coronavirus HTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
Parker_ORF1ab_YP_009924380_1_NA_NA_Rat_Murine_coronavirus HTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
RA59_R13_nsp14_VIPR_ALG4_225403203_18138_19700_1_2006_01_01_USA_Mouse_Murine_coronavirus HTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
Penn_97_1_nsp14_VIPR_ALG4_7769342_17996_19558_1_NA_NA_Unknown_Murine_coronavirus HTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
RA59_SJHM_nsp14_VIPR_ALG4_225403218_18122_19684_1_NA_USA_Mouse_Murine_coronavirus HTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
RJHM_A_nsp14_VIPR_ALG4_225403212_18128_19690_1_NA_USA_Mouse_Murine_coronavirus HTNPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
SA59_RJHM_nsp14_VIPR_ALG4_225403240_18128_19690_1_NA_USA_Mouse_Murine_coronavirus HTNPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
S_nsp14_VIPR_ALG4_298199703_18165_19727_1_NA_USA_Mouse_Murine_coronavirus HTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
UNKNOWN_AC_000192_nsp14_VIPR_ALG4_YP_209229_2_18178_19734_1_NA_NA_Unknown_Murine_coronavirus HTNPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
inf_MHV_A59_nsp14_VIPR_ALG4_225403276_18136_19698_1_NA_USA_Mouse_Murine_coronavirus HTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
repJHM_RA59_nsp14_VIPR_ALG4_225403293_18111_19673_1_NA_USA_Mouse_Murine_coronavirus HTNPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
repA59_RJHM_nsp14_VIPR_ALG4_225403235_18133_19695_1_NA_USA_Mouse_Murine_coronavirus HTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLK
** *****************************:*************************:*
681_nsp14_VIPR_ALG4_381354058_18128_19690_1_NA_NA_Rat_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFAKLQ
A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
JHM_WU_nsp14_VIPR_ALG4_397136020_18154_19716_1_1947_08_14_USA_Unknown_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
JHM_WU_Dns2_nsp14_VIPR_ALG4_397136010_18150_19712_1_1947_08_14_USA_Unknown_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
MHV_1_nsp14_VIPR_ALG4_225403254_18106_19668_1_NA_USA_Mouse_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
MHV_2_nsp14_VIPR_ALG4_6625761_17999_19561_1_NA_NA_Unknown_Murine_coronavirus HAEDYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
MHV_3_nsp14_VIPR_ALG4_225403266_18105_19667_1_NA_USA_Mouse_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp14_VIPR_ALG4_530290989_18140_19702_1_2012_10_25_USA_Mouse_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
MHV_JHM_IA_nsp14_VIPR_ALG4_225403291_18150_19712_1_NA_USA_Mouse_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
MHV_MI_nsp14_VIPR_ALG4_293330423_18090_19652_1_1994_Australia_Mouse_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYRTFDFYNLWNTFTRLQ
MHV_S_3239_17_nsp14_VIPR_ALG4_380706996_18165_19727_1_NA_NA_Unknown_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
ML_10_nsp14_VIPR_ALG4_7769353_18152_19714_1_NA_NA_Unknown_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
ML_11_nsp14_VIPR_ALG4_7739595_17999_19561_1_NA_NA_Unknown_Murine_coronavirus HAEDYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
Parker_ORF1ab_YP_009924380_1_NA_NA_Rat_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
RA59_R13_nsp14_VIPR_ALG4_225403203_18138_19700_1_2006_01_01_USA_Mouse_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
Penn_97_1_nsp14_VIPR_ALG4_7769342_17996_19558_1_NA_NA_Unknown_Murine_coronavirus HAEDYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
RA59_SJHM_nsp14_VIPR_ALG4_225403218_18122_19684_1_NA_USA_Mouse_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
RJHM_A_nsp14_VIPR_ALG4_225403212_18128_19690_1_NA_USA_Mouse_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
SA59_RJHM_nsp14_VIPR_ALG4_225403240_18128_19690_1_NA_USA_Mouse_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
S_nsp14_VIPR_ALG4_298199703_18165_19727_1_NA_USA_Mouse_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
UNKNOWN_AC_000192_nsp14_VIPR_ALG4_YP_209229_2_18178_19734_1_NA_NA_Unknown_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
inf_MHV_A59_nsp14_VIPR_ALG4_225403276_18136_19698_1_NA_USA_Mouse_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
repJHM_RA59_nsp14_VIPR_ALG4_225403293_18111_19673_1_NA_USA_Mouse_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
repA59_RJHM_nsp14_VIPR_ALG4_225403235_18133_19695_1_NA_USA_Mouse_Murine_coronavirus HAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
***:*********************:***********::**
>681_nsp14_VIPR_ALG4_381354058_18128_19690_1_NA_NA_Rat_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAAGAGCTATATAGGTTATCACCCGGCTCATGCACCTTCCTTTTTGGCAGTTGATGACAAATATAAGGTAGGCGGTGATCTGGCCGTATGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGGTTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACAAGAGATGAAGCTATCAAACGTGTTAGAGCTTGGGTTGGCTTTGATGCAGAAGGCGCTCATGCGACGCGTGATAGCATTGGGACAAACTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTCGTTGTCGAGGCCACTGGAATGTTTGCTGAGAGAGATGGCTATGTCTTTAAAAAGGCAGCAGCACGAGCTCCTCCCGGCGAACAATTTAAACACCTCGTTCCACTCCTGTCTAGGGGGCAGAAATGGGATGAGGTTCGAATTCGAATAGTACCAATGGTATCCGACCACTTAGTGGATTTGGCAGATAGTGTTGTACTTGTAACGTGGGCTGCCAGCTTTGAGCTCACATGTTTGCGATATTTCGCTAAAGTCGGAAAAGAAGTTGTTTGTAGTGTCTGCAATAAGCGGGCGACATGTTTTAATTCTAGAACTGGGTACTATGGATGCTGGCGACATAGTTATTCCTGTGATTATCTGTATAACCCACTAATAGTTGATATTGAACAGTGGGGATATACGGGATCTTTAACTAGCAATCATGACCCTATTTGCAGCGTGCATAAGGGTGCTCATGTCGCCTCATCTGATGCTATCATGACCCGATGCTTAGCTGTTCATGATTGCTTTTGTAAATCTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTCAGTGTTAATACCTCCTGTAGGTTATTGCAGCGCGTAATGTTTAGGGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCCAAGGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCCGTTAAACAGTTTGTTTATAAATACGAGGCACATAAAGATCTATTTTTAGATGGTTTGTGTATGTTTTGGAACTGCAATGTGGATAAGTATCCAGCGAATGCAGTTGTGTGTAGGTTTGACACGCGTGTGTTGAACAAATTAAATCTCCCTGGCTGTAATGGTGGTAGTCTGTATGTTAATAAACATGCATTCCACACTAGCCCTTTTACAAGGGCCGCCTTCGAGAATTTGAAGCCTATGCCTTTCTTTTATTATTCAGATACGCCTTGTGTGTATATGGAAGGCATGGACTCTAAGCAGGTCGATTATGTCCCATTGAGAAGCGCTACATGCATTACAAGATGCAATTTAGGTGGTGCTGTTTGTTTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTATAACCTTTGGAATACTTTTGCTAAGCTCCAA >A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAGGAGCTATGTAGGATATCACCCAGCCCATGCACCATCCTTTTTGGCAGTTGATGACAAATATAAGGTAGGCGGTGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACTAGAGATGAAGCTATCAAACGTGTTAGAGCCTGGGTTGGCTTCGATGCAGAAGGTGCCCATGCGATACGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTTGTTGTCGAAGCCACTGGAATGTTTGCTGAGAGAGATGGTTATGTCTTTAAAAAGGCAGCCGCACGAGCTCCTCCTGGCGAACAATTTAAACACCTTATCCCACTTATGTCAAGAGGGCAGAAATGGGATGTGGTTCGCATTAGAATAGTACAAATGTTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTTGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAGAGAAGTTGTGTGTAGTGTCTGCACCAAGCGTGCGACATGTTTTAATTCTAGAACTGGATACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTACAACCCACTAATAGTTGACATTCAACAGTGGGGATATACAGGATCTTTAACTAGCAATCATGATCCTATTTGCAGCGTGCATAAGGGTGCTCATGTTGCATCATCTGATGCTATCATGACCCGGTGTCTAGCTGTTCATGATTGCTTTTGTAAGTCTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTCAGTGTTAATACCTCCTGCAGGTTATTGCAGCGCGTAATGTTTAGGGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAAGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAATACGAGGCACATAAAGATCAATTTTTAGATGGTTTGTGTATGTTTTGGAACTGCAATGTGGATAAGTATCCAGCGAATGCAGTTGTGTGTAGGTTTGACACGCGTGTGTTGAACAAATTAAATCTCCCTGGCTGTAATGGTGGCAGTTTGTATGTTAACAAACATGCATTCCACACCAGTCCCTTTACCCGGGCTGCCTTCGAGAATTTGAAGCCTATGCCTTTCTTTTATTATTCAGATACGCCCTGTGTGTATATGGAAGGCATGGAATCTAAGCAGGTCGATTATGTCCCATTGAGAAGCGCTACATGCATCACAAGATGCAATTTAGGTGGCGCTGTTTGTTTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTATAACCTTTGGAATACTTTTACTAGGCTCCAA >JHM_WU_nsp14_VIPR_ALG4_397136020_18154_19716_1_1947_08_14_USA_Unknown_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAAGAGCTATGTAGGTTATCACCCGGCCCATGCGCCTTCCTTTTTGGCAGTTGATGATAAATATAAGGTAAGTGGCGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACAAGAGATGAAGCTATCAAACGTGTTAGAGCTTGGGTGGGCTTCGATGCAGAAGGTGCTCATGCGACGCGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTCGTCGTCGAGGCCACTGGAATGTTTGCTGAGAGAGATGGCTACGTCTTTAAAAAGGCAGCCGCACGAGCACCTCCCGGCGAACAATTTAAACACCTCGTCCCACTTATGTCTAGAGGACAGAAATGGGACGTGGTTCGAATTCGAATAGTACAAATGCTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTCGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAAAGAAGTTGTGTGTAGTGTCTGCAACAAGCGTGCGACATGTTTTAATTCTAGAACTGGGTACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTACAACCCACTAATAGTTGACATTCAACAGTGGGGATATACAGGATCTTTAACTAGCAATCATGATCCTATTTGCAGCGTGCATAAGGGTGCTCATGTCGCATCATCCGATGCTATCATGACTCGATGCTTAGCTGTCCATGATTGCTTTTGTAAGTCTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTCAGTGTTAATACCTCCTGCAGGTTATTGCAGCGCGTAATGTTCAGAGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAGGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAGTACGAGGCACATAAAGATCAATTTTTAGATGGTTTATGTATGTTCTGGAACTGCAATGTGGATAAGTATCCCGCGAATGCAGTTGTCTGTAGGTTTGACACGCGAGTGTTAAGCAAATTAAATCTCCCTGGCTGTAATGGCGGTAGTCTGTATGTTAATAAACATGCATTCCACACCAATCCCTTTACGCGGGCTGCCTTCGAGAATTTAAAGCCTATGCCGTTCTTTTATTATTCAGATACGCCTTGTGTGTATATGGAAGGCATGGAGTCTAAGCAGGTCGATTATGTCCCACTAAGAAGCGCCACTTGCATTACAAGATGCAATTTAGGGGGTGCTGTTTGTCTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCTACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTACAACCTTTGGAATACTTTTACTAGGCTCCAA >JHM_WU_Dns2_nsp14_VIPR_ALG4_397136010_18150_19712_1_1947_08_14_USA_Unknown_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAAGAGCTATGTAGGTTATCACCCGGCCCATGCGCCTTCCTTTTTGGCAGTTGATGATAAATATAAGGTAAGTGGCGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACAAGAGATGAAGCTATCAAACGTGTTAGAGCTTGGGTGGGCTTCGATGCAGAAGGTGCTCATGCGACGCGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTCGTCGTCGAGGCCACTGGAATGTTTGCTGAGAGAGATGGCTACGTCTTTAAAAAGGCAGCCGCACGAGCACCTCCCGGCGAACAATTTAAACACCTCGTCCCACTTATGTCTAGAGGACAGAAATGGGACGTGGTTCGAATTCGAATAGTACAAATGCTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTCGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAAAGAAGTTGTGTGTAGTGTCTGCAACAAGCGTGCGACATGTTTTAATTCTAGAACTGGGTACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTACAACCCACTAATAGTTGACATTCAACAGTGGGGATATACAGGATCTTTAACTAGCAATCATGATCCTATTTGCAGCGTGCATAAGGGTGCTCATGTCGCATCATCCGATGCTATCATGACTCGATGCTTAGCTGTCCATGATTGCTTTTGTAAGTCTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTCAGTGTTAATACCTCCTGCAGGTTATTGCAGCGCGTAATGTTCAGAGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAGGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAGTACGAGGCACATAAAGATCAATTTTTAGATGGTTTATGTATGTTCTGGAACTGCAATGTGGATAAGTATCCCGCGAATGCAGTTGTCTGTAGGTTTGACACGCGAGTGTTAAGCAAATTAAATCTCCCTGGCTGTAATGGCGGTAGTCTGTATGTTAATAAACATGCATTCCACACCAATCCCTTTACGCGGGCTGCCTTCGAGAATTTAAAGCCTATGCCGTTCTTTTATTATTCAGATACGCCTTGTGTGTATATGGAAGGCATGGAGTCTAAGCAGGTCGATTATGTCCCACTAAGAAGCGCCACTTGCATTACAAGATGCAATTTAGGGGGTGCTGTTTGTCTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCTACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTACAACCTTTGGAATACTTTTACTAGGCTCCAA >MHV_1_nsp14_VIPR_ALG4_225403254_18106_19668_1_NA_USA_Mouse_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAAGAGTTATGTGGGATACCACCCGGCTCATGCTCCTTCATTTTTGGCAGTTGATGATAAATATAAGGTAGGTGGTGATTTAGCCGTATGCCTTAATGTTGCTGATTCTGCTGTCACCTATTCGCGACTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACAAGAGATGAAGCTATCAAACGTGTTAGAGCTTGGGTGGGCTTTGATGCAGAAGGTGCCCATGCGATACGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACCGGAATTGATTTTGTCGTCGAGGCCACTGGAATGTTTGCCGAGAGAGATGGCTACGTCTTTAAAAAGGCAGTGGCACGAGCACCTCCCGGCGAACAATTTAAACACCTCGTCCCACTTATGTCTAGAGGACAGAAATGGGACGTGGTTCGAATTCGAATAGTACAAATGCTGTCAGACCACTTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTTGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAAAGAAGTTATGTGTAGTGTCTGCAACAAGCGTGCGACCTGTTTTAATTCTAGAACTGGATACTATGGATGCTGGCGACATAGTTACTCCTGTGATTACCTGTATAACCCACTAATAGTTGATATCCAACAGTGGGGATACACAGGCTCTTTAACTAGCAATCATGATCAAATTTGCAGCGTGCATAAGGGTGCTCATGTTGCATCATCTGATGCTATCATGACTCGATGCTTAGCTGTCCATGATTGCTTTTGTAAGTCTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTCAGTGTTAATACCTCCTGCAGGTTATTGCAGCGCGTAATGTTTAGGGCTGCGATGCTATGCAACAGGTATGATGTGTGTTATGACATTGGCAACCCTAAAGGTCTTGCCTGTGTCAAAGGTTATGATTTTAAGTTTTATGATGCCTCTCCTGTTGTTAAGTCTGTTAAGCAGTTTGTTTATAAATACGAGGCACATAAAGATCAATTTTTAGATGGTTTATGTATGTTTTGGAACTGCAATGTGGATAAGTATCCAGCGAATGCAGTTGTGTGTAGGTTCGACACGAGAGTGTTAAACAAATTAAATCTCCCTGGCTGTAATGGTGGTAGTCTGTATGTTAATAAACATGCATTCCACACCAGTCCCTTTACGCGGGCAGCCTTCGAGAATTTAAAGCCTATGCCTTTCTTTTATTATTCAGATACGCCTTGTGTGTATATGGAAGGCATGGAGTCTAAGCAGGTCGATTATGTCCCATTGAGAAGCGCCACTTGCATTACAAGATGCAATTTAGGGGGTGCTGTTTGTCTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGCTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTACAACCTTTGGAATACTTTTACTAGGCTCCAA >MHV_2_nsp14_VIPR_ALG4_6625761_17999_19561_1_NA_NA_Unknown_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAGAAGCTATGCAGGTTATCACCCAGCTCATGCGCCTTCCTTTTTGGCAGTTGATGATAAATATAAGGTAGGTGGCGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACTAGAGATGAAGCTATCAGACGTGTTAGAGCCTGGGTAGGCTTTGATGCAGAAGGTGCCCATGCGACGCGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTTGTTGTCGAGGCCACTGGAATGTTTGCCGAGAGAGATGGCTACGTCTTTAAAAAGGCAGTGGCACGAGCACCTCCCGGCGAACAATTTAAACACCTCGTCCCACTTATGTCTAGAGGACAGAAATGGGACGTGGTTCGAATTCGAATAGTACAAATGCTGTCAGACCACTTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTCGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAAAGAAGTTGTGTGTAGTGTCTGCAACAAGCGTGCGACATGTTTTAATTCTAGGACTGGGTACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTATAACCCACTAATAGTTGATATTCAACAGTGGGGATATACTGGGTCTTTAACTAGCAATCATGACCTCATTTGCAGCGTGCATAAGGGTGCTCATGTCGCATCTTCTGATGCTATCATGACCCGATGCTTAGCTGTCCATGATTGCTTTTGCAAATCTGTTAATTGGAGTTTAGAATACCCCATTATCTCAAATGAGGTTAGTGTTAATACCTCCTGCAGGTTATTGCAGCGTGTAATGTTTAGGGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAAGGTCTTGCCTGTGTCAAAGGCTATGATTTTAAGTTTTATGATGCCTCTCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAGTATGAGGCACATAAAGATCAATTTTTAGATGGTTTATGTATGTTTTGGAACTGCAATGTGGATAAGTATCCCGCGAATGCAGTTGTATGTAGGTTTGACACGAGAGTGTTAAACAAATTAAATCTCCCTGGCTGTAATGGTGGTAGTCTGTATGTTAATAAACATGCATTCCACACCAGTCCCTTTACGCGGGCAGCCTTCGAGAATTTGAAGCCTATGCCTTTCTTTTATTACTCAGATACGCCTTGTGTGTATATGGAGGGCATGGAGTCTAAGCAGGTCGATTATGTCCCATTGAGAAGCGCCACTTGCATTACAAGATGCAATTTAGGTGGCGCTGTTTGTTTAAAACATGCTGAGGATTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACCTTTTGGGTCTATAAGACTTTTGATTTTTACAACCTTTGGAATACTTTTACTAGGCTCCAA >MHV_3_nsp14_VIPR_ALG4_225403266_18105_19667_1_NA_USA_Mouse_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAAGAGTTATGTGGGATACCACCCGGCTCATGCTCCTTCATTTTTGGCAGTTGATGATAAATATAAGGTAGGTGGCGATTTAGCCGTATGCCTTAATGTTGCTGATTCTGCTGTCACCTATTCGCGGCTTATATCCCTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACAAGAGATGAAGCTATCAAACGTGTTAGAGCTTGGGTGGGCTTTGATGCAGAAGGTGCCCATGCGATACGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTTGTAGTCGAGGCCACTGGAATGTTCGCTGAGAGAGATGGCTATGTCTTTAAGAAGGCAGTGGCACGAGCTCCTCCCGGTGAACAATTTAAACACCTCGTCCCGTTGATGTCGAGAGGACAGAAATGGGAAGTGGTTCGAATTCGAATAGTACAAATGCTGTCTGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTTGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAAAGAAGTTATGTGTAGTGTCTGCAACAAGCGTGCGACATGTTTTAATTCTAGAACTGGATACTATGGATGCTGGCGGCATAGTTATTCCTGTGATTACCTGTACAACCCACTAATAGTTGATATTCAACAGTGGGGATATACAGGATCTTTAACTAGCAATCATGATCAAATTTGCAGCATGCATAAGGGTGCTCATGTTGCATCATCTGATGCTATCATGACCCGATGCTTGGCTGTCCATGATTGCTTTTGTAAGTCTGTTAATTGGAATGTAGAATACCCCATTATTTCAAATGAGGTTAGTGTTAATACCTCTTGCAGGTTGTTGCAGCGCGTAATGTTTAGGGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAAGGTCTTGCCTGTGTCAAAGGTTATGATTTTAAGTTTTATGATGCCTCGCCTGTTGTTAAGTCTGTTAAGCAGTTTGTTTATAAATACGAGGCACATAAAGATCAATTTTTAGATGGTTTATGTATGTTTTGGAACTGCAATGTGGATAAGTATCCAGCGAATGCAGTTGTGTGTAGGTTCGACACGAGAGTGTTAAACAAATTAAATCTCCCTGGCTGTAATGGTGGTAGTCTGTATGTTAATAAACATGCATTCCACACCATCCCCTTTACGCGGGCGGCCTTTGAGAATTTAAAGCCTATGCCTTTCTTTTATTATTCAGATACGCCTTGTGTGTATATGGAAGGCATGGAGTCTAAGCAGGTCGATTATGTCCCATTAAGAAGCGCTACCTGCATCACAAGATGCAACTTAGGCGGTGCTGTCTGCGTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTCTGGGTCTATAAGACTTTTGATTTTTACAACCTCTGGAATACTTTTACTAGGCTCCAA >MHV_BHKR_lab_USA_infA59_H126A_2012_nsp14_VIPR_ALG4_530290989_18140_19702_1_2012_10_25_USA_Mouse_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAGGAGCTATGTAGGATATCACCCAGCCCATGCACCATCCTTTTTGGCAGTTGATGACAAATATAAGGTAGGCGGTGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACTAGAGATGAAGCTATCAAACGTGTTAGAGCCTGGGTTGGCTTCGATGCAGAAGGTGCCCATGCGATACGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTTGTTGTCGAAGCCACTGGAATGTTTGCTGAGAGAGATGGTTATGTCTTTAAAAAGGCAGCCGCACGAGCTCCTCCTGGCGAACAATTTAAACACCTTATCCCACTTATGTCAAGAGGGCAGAAATGGGATGTGGTTCGCATTAGAATAGTACAAATGTTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTTGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAGAGAAGTTGTGTGTAGTGTCTGCACCAAGCGTGCGACATGTTTTAATTCTAGAACTGGATACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTACAACCCACTAATAGTTGACATTCAACAGTGGGGATATACAGGATCTTTAACTAGCAATCATGATCCTATTTGCAGCGTGCATAAGGGTGCTCATGTTGCATCATCTGATGCTATCATGACCCGGTGTCTAGCTGTTCATGATTGCTTTTGTAAGTCTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTCAGTGTTAATACCTCCTGCAGGTTATTGCAGCGCGTAATGTTTAGGGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAAGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAATACGAGGCACATAAAGATCAATTTTTAGATGGTTTGTGTATGTTTTGGAACTGCAATGTGGATAAGTATCCAGCGAATGCAGTTGTGTGTAGGTTTGACACGCGTGTGTTGAACAAATTAAATCTCCCTGGCTGTAATGGTGGCAGTTTGTATGTTAACAAACATGCATTCCACACCAGTCCCTTTACCCGGGCTGCCTTCGAGAATTTGAAGCCTATGCCTTTCTTTTATTATTCAGATACGCCCTGTGTGTATATGGAAGGCATGGAATCTAAGCAGGTCGATTATGTCCCATTGAGAAGCGCTACATGCATCACAAGATGCAATTTAGGTGGCGCTGTTTGTTTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTATAACCTTTGGAATACTTTTACTAGGCTCCAA >MHV_JHM_IA_nsp14_VIPR_ALG4_225403291_18150_19712_1_NA_USA_Mouse_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAAGAGCTATGTAGGTTATCACCCGGCCCATGCGCCTTCCTTTTTGGCAGTTGATGATAAATATAAGGTAAGTGGCGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACAAGAGATGAAGCTATCAAACGTGTTAGAGCTTGGGTGGGCTTCGATGCAGAAGGTGCTCATGCGACGCGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTCGTCGTCGAGGCCACTGGAATGTTTGCTGAGAGAGATGGCTACGTCTTTAAAAAGGCAGCCGCACGAGCACCTCCCGGCGAACAATTTAAACACCTCGTCCCACTTATGTCTAGAGGACAGAAATGGGACGTGGTTCGAATTCGAATAGTACAAATGCTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTCGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAAAGAAGTTGTGTGTAGTGTCTGCAACAAGCGTGCGACATGTTTTAATTCTAGAACTGGGTACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTACAACCCACTAATAGTTGACATTCAACAGTGGGGATATACAGGATCTTTAACTAGCAATCATGATCCTATTTGCAGCGTGCATAAGGGTGCTCATGTCGCATCATCCGATGCTATCATGACTCGATGCTTAGCTGTCCATGATTGCTTTTGTAAGTCTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTCAGTGTTAATACCTCCTGCAGGTTATTGCAGCGCGTAATGTTCAGAGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAGGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAGTACGAGGCACATAAAGATCAATTTTTAGATGGTTTATGTATGTTCTGGAACTGCAATGTGGATAAGTATCCCGCGAATGCAGTTGTCTGTAGGTTTGACACGCGAGTGTTAAGCAAATTAAATCTCCCTGGCTGTAATGGCGGTAGTCTGTATGTTAATAAACATGCATTCCACACCAATCCCTTTACGCGGGCTGCCTTCGAGAATTTAAAGCCTATGCCGTTCTTTTATTATTCAGATACGCCTTGTGTGTATATGGAAGGCATGGAGTCTAAGCAGGTCGATTATGTCCCACTAAGAAGCGCCACTTGCATTACAAGATGCAATTTAGGGGGTGCTGTTTGTCTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTACAACCTTTGGAATACTTTTACTAGGCTCCAA >MHV_MI_nsp14_VIPR_ALG4_293330423_18090_19652_1_1994_Australia_Mouse_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAAGAGCTATGTTGGATATCATCCGGCTCATGCTCCTTCCTTTTTGGCAGTTGATGATAAATATAAGGTAGGTGGTGATTTAGCCGTATGCCTTAATGTTGCTGATTCTGCTGTCACATATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACAAGAGATGAAGCTATCAAACGTGTTAGAGCTTGGGTAGGCTTCGATGCTGAAGGTGCCCATGCGATACGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTTGTAGTCGAGGCCACTGGAATGTTCGCTGAGAGAGATGGCTATGTCTTTAAAAAGGCAGCAGCGCGAGCTCCTCCCGGCGAACAATTTAAACACCTTATCCCACTTATGGCAAGAGGGCAGAAATGGGATGTGGTTCGAATTAGAATAGTGCAAATGTTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTTGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAAAGAAGTTGTGTGTAGTGTCTGCAATAAGCGTGCGACTTGTTTTAATTCTAGAACTGGATACTATGGATGCTGGCGACATAGTTATTCCTGTGATTATCTGTACAACCCACTAATAGTTGATATCCAACAGTGGGGATATACAGGATCTTTAACTAGCAACCATGATCAAATTTGCAGCGTGCATAAGGGTGCTCATGTTGCCTCATCTGATGCTATCATGACCCGATGCTTGGCTGTCCATGATTGCTTTTGTAAGTCTGTTAATTGGAATGTAGAATACCCCATTATTTCAAATGAGGTTAGTGTTAATACCTCTTGCAGGTTATTGCAGCGCGTAATGTTTAGGGCTGCGATGCTATGCAATAGGTACGATGTGTGTTATGACATTGGCAACCCCAAAGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCTCCTGTTGTTAAGTCTGTTAAGCAGTTTGTTTATAAATACGAGGCACATAAAGATCTATTTTTAGATGGTTTATGTATGTTTTGGAACTGCAATGTGGATAAGTACCCAGCGAATGCAGTTGTATGTAGGTTTGACACACGGGTGTTAAACAAATTAAATCTCCCTGGCTGTAATGGTGGTAGCCTGTATGTTAATAAACATGCATTCCACACTAGCCCTTTTACTCGGGCTGCCTTCGAGAATTTGAAGCCTATGCCTTTCTTTTATTATTCAGATACGCCTTGTGTGTATATGGAAGGCATGGAATCTAAGCAGGTCGATTATGTCCCATTGAGAAGCGCCACATGCATCACGAGATGCAATTTAGGTGGTGCTGTTTGCGTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTTTGGGTCTATAGGACTTTTGATTTTTACAACCTTTGGAATACTTTTACTAGGCTCCAA >MHV_S_3239_17_nsp14_VIPR_ALG4_380706996_18165_19727_1_NA_NA_Unknown_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAGGAGCTATGAGGGATATCACCCAGCCCATGCACCATCCTTTTTGGCAGTTGATGACAAATATAAGGTAGGCGGTGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACAAGAGATGAAGCTATCAAACGTGTTAGAGCTTGGGTGGGCTTCGATGCAGAAGGTGCTCATGCGACGCGTGATAGCATTGGGACAAATTTCCCACTACAATTAGGCTTTTCGACTGGAATAGATTTCGTTGTCGAGGCCACTGGAATGTTTGCTGAGAGAGATGGCTATGTCTTTAAGAAGGCAGTGGCACGAGCTCCTCCCGGCGATCAATTTAAACACCTCGTTCCACTTATGTCAAGAGGACAGAAGTGGGATGTGGTTCGAACTCGAATAGTACAAATGCTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTTGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAAAGAAGTTGTATGTAGTGTCTGCAACAAGCGTGCGACATGTTTTAATTCTAGAACTGGGTATTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTACAACCCACTAATAGTTGATATTCAACAGTGGGGGTATACAGGGTCTTTAACTAGCAATCACGATCCCATTTGCAGCGTGCATAAGGGTGCTCATGTTGCATCATCTGATGCTATCATGACCCGGTGTCTAGCTGTTCATGATTGCTTTTGTAAGTTTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTTAGTGTTAATGCCTCCTGCAGGTCATTGCAGCGCGTAATGTTTAGGGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAAGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAGTACGAGGCACATAAAGATCAATTTTTAGATGGTTTATGTATGTTTTGGAACTGCAATGTGGATAAGTATCCCGCGAATGCAGTTGTGTGTAGGTTTGACACGCGTGTGTTGAACAAATTAAATCTCCCTGGCTGTAATGGTGGTAGTCTGTATGTTAATAAACATGCATTCCACACCAGTCCCTTCACCCGGGCTGCCTTCGAGAATTTGAAGCCTATGCCTTTCTTTTATTATTCAGATACGCCTTGTGTGTATATGGAAGGCATGGAATCTAAGCAGGTCGATTATGTCCCATTGAGAAGCGCCACATGCATCACAAGATGCAATTTAGGTGGCGCTGTTTGTTTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTACAACCTTTGGAATACTTTTACTAGGCTCCAA >ML_10_nsp14_VIPR_ALG4_7769353_18152_19714_1_NA_NA_Unknown_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAGGAGCTATGTAGGATATCACCCAGCCCATGCACCATCCTTTTTGGCAGTTGATGACAAATATAAGGTAGGCGGTGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCAGTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACTAGAGATGAAGCTATCAAACGTGTTAGAGCCTGGGTTGGCTTCGATGCAGAAGGTGCCCATGCGATACGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTTGTTGTCGAAGCCACTGGAATGTTTGCTGAGAGAGATGGTTATGTCTTTAAAAAGGCAGCCGCACGAGCTCCTCCTGGCGAACAATTTAAACACCTTATCCCACTTATGTCAAGAGGGCAGAAATGGGATGTGGTTCGAATTAGAATAGTACAAATGTTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTTGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAGAGAAGTTGTGTGTAGTGTCTGCACCAAGCGTGCGACATGTTTTAATTCTAGAACTGGATACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTACAACCCACTAATAGTTGACATTCAACAGTGGGGATATACAGGATCTTTAACTAGCAATCATGATCCTATTTGCAGCGTGCATAAGGGTGCTCATGTTGCATCATCTGATGCTATCATGACCCGGTGTCTAGCTGTTCATGATTGCTTTTGTAAGTCTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTCAGTGTTAATACCTCCTGCAGGTTATTGCAGCGCGTAATGTTTAGGGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAAGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAATACGAGGCACATAAAGATCAATTTTTAGATGGTTTGTGTATGTTTTGGAACTGCAATGTGGATAAGTATCCAGCGAATGCAGTTGTGTGTAGGTTTGACACGCGTGTGTTGAACAAATTAAATCTCCCTGGCTGTAATGGTGGCAGTTTGTATGTTAACAAACATGCATTCCACACCAGTCCCTTTACCCGGGCTGCCTTCGAGAATTTGAAGCCTATGCCTTTCTTTTATTATTCAGATACGCCCTGTGTGTATATGGAAGGCATGGAATCTAAGCAGGTCGATTATGTCCCATTGAGAAGCGCTACATGCATCACAAGATGCAATTTAGGTGGCGCTGTTTGTTTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTATAACCTTTGGAATACTTTTACTAGGCTCCAA >ML_11_nsp14_VIPR_ALG4_7739595_17999_19561_1_NA_NA_Unknown_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAGAAGCTATGCAGGTTATCACCCAGCTCATGCGCCTTCCTTTTTGGCAGTTGATGATAAATATAAGGTAGGTGGCGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACTAGAGATGAAGCTATCAGACGTGTTAGAGCCTGGGTAGGCTTTGATGCAGAAGGTGCCCATGCGACGCGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTTGTTGTCGAGGCCACTGGAATGTTTGCCGAGAGAGATGGCTACGTCTTTAAAAAGGCAGTGGCACGAGCACCTCCCGGCGAACAATTTAAACACCTCGTCCCACTTATGTCTAGAGGACAGAAATGGGACGTGGTTCGAATTCGAATAGTACAAATGCTGTCAGACCACTTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTCGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAAAGAAGTTGTGTGTAGTGTCTGCAACAAGCGTGCGACATGTTTTAATTCTAGGACTGGGTACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTATAACCCACTAATAGTTGATATTCAACAGTGGGGATATACTGGGTCTTTAACTAGCAATCATGACCTCATTTGCAGCGTGCATAAGGGTGCTCATGTCGCATCTTCTGATGCTATCATGACCCGATGCTTAGCTGTCCATGATTGCTTTTGCAAATCTGTTAATTGGAGTTTAGAATACCCCATTATCTCAAATGAGGTTAGTGTTAATACCTCCTGCAGGTTATTGCAGCGTGTAATGTTTAGGGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAAGGTCTTGCCTGTGTCAAAGGCTATGATTTTAAGTTTTATGATGCCTCTCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAGTATGAGGCACATAAAGATCAATTTTTAGATGGTTTATGTATGTTTTGGAACTGCAATGTGGATAAGTATCCCGCGAATGCAGTTGTATGTAGGTTTGACACGAGAGTGTTAAACAAATTAAATCTCCCTGGCTGTAATGGTGGTAGTCTGTATGTTAATAAACATGCATTCCACACCAGTCCCTTTACGCGGGCAGCCTTCGAGAATTTGAAGCCTATGCCTTTCTTTTATTACTCAGATACGCCTTGTGTGTATATGGAGGGCATGGAGTCTAAGCAGGTCGATTATGTCCCATTGAGAAGCGCCACTTGCATTACAAGATGCAATTTAGGTGGCGCTGTTTGTTTAAAACATGCTGAGGATTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACCTTTTGGGTCTATAAGACTTTTGATTTTTACAACCTTTGGAATACTTTTACTAGGCTCCAA >Parker_ORF1ab_YP_009924380_1_NA_NA_Rat_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAAGAGCTATGATGGGTATCACCCAGCCCATGCACCGTCTTTTTTGGCAGTTGATGATAAATATAAGGTAGGCGGTGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTTCTGTCACTTACTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACAAGAGATGAAGCTATCAAACGTGTTAGAGCTTGGGTTGGCTTTGACGCAGAAGGCGCTCATGCGACGCGTGATAGCATTGGGACAAACTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTCGTTGTCGAGGCCACTGGAATGTTTGCTGAGAGAGAAGGCTATGTCTTTAAAAAGGCAGCAGCACGAGCTCCTCCCGGCGAACAATTTAAACACCTCGTTCCACTTATGTCTAGAGGGCAGAAATGGGATGTGGTTCGAATTCGAATAGTACAAATGTTGTCAGACCACTTAGTGGATTTGGCAGATAGTGTTGTACTTGTAACGTGGGCTGCCAGCTTTGAGCTCACATGTTTGCGATATTTCGCTAAAGTCGGAAAAGAAGTTGTTTGTAGTGTCTGCAATAAGCGGGCGACATGTTTTAATTCTAGAACTGGATACTATGGATGCTGGCGACATAGTTATTCCTGTGATTATCTGTATAACCCACTAATAGTTGATATTCAACAGTGGGGATATACAGGATCTTTAACTAGCAACCATGACCCTATTTGCAGCGTGCATAAGGGTGCTCATGTCGCATCATCTGATGCTATCATGACCCGCTGCTTAGCTGTTCATGATTGCTTTTGTAAATCTGTCAATTGGAATTTAGAATACCCCATTATTTTAAATGAGGTCAGTGTTAATACCTCCTGTAGGTTATTGCAGCGCGTAATGTTTAGGGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAGGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAGTACGAGGCACATAAAGATCAATTTTTAGATGGTCTATGTATGTTCTGGAACTGCAATGTGGATAAGTATCCCGCGAATGCAGTTGTGTGTAGGTTTGACACGCGCGTGTTAAACAAATTAAATCTCCCTGGCTGTAATGGTGGTAGTCTGTATGTTAACAAACATGCATTCCACACTAGCCCTTTTACCCGGGCTGCATTCGAGAATTTGAAGCCTATGCCTTTCTTCTATTATTCAGATACACCTTGTGTGTATATGGAAGGCATGGAATCTAAGCAGGTAGATTATGTCCCATTAAGGAGCGCTACATGCATTACAAGATGCAATTTAGGTGGCGCTGTTTGCTTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTATAACCTTTGGAATACTTTTACTAGGCTCCAA >RA59_R13_nsp14_VIPR_ALG4_225403203_18138_19700_1_2006_01_01_USA_Mouse_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAGGAGCTATGTAGGATATCACCCAGCCCATGCACCATCCTTTTTGGCAGTTGATGACAAATATAAGGTAGGCGGTGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACTAGAGATGAAGCTATCAAACGTGTTAGAGCCTGGGTTGGCTTCGATGCAGAAGGTGCCCATGCGATACGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTTGTTGTCGAAGCCACTGGAATGTTTGCTGAGAGAGATGGTTATGTCTTTAAAAAGGCAGCCGCACGAGCTCCTCCTGGCGAACAATTTAAACACCTTATCCCACTTATGTCAAGAGGGCAGAAATGGGATGTGGTTCGAATTAGAATAGTACAAATGTTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTTGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAGAGAAGTTGTGTGTAGTGTCTGCACCAAGCGTGCGACATGTTTTAATTCTAGAACTGGATACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTACAACCCACTAATAGTTGACATTCAACAGTGGGGATATACAGGATCTTTAACTAGCAATCATGATCCTATTTGCAGCGTGCATAAGGGTGCTCATGTTGCATCATCTGATGCTATCATGACCCGGTGTCTAGCTGTTCATGATTGCTTTTGTAAGTCTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTCAGTGTTAATACCTCCTGCAGGTTATTGCAGCGCGTAATGTTTAGGGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAAGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAATACGAGGCACATAAAGATCAATTTTTAGATGGTTTGTGTATGTTTTGGAACTGCAATGTGGATAAGTATCCAGCGAATGCAGTTGTGTGTAGGTTTGACACGCGTGTGTTGAACAAATTAAATCTCCCTGGCTGTAATGGTGGCAGTTTGTATGTTAACAAACATGCATTCCACACCAGTCCCTTTACCCGGGCTGCCTTCGAGAATTTGAAGCCTATGCCTTTCTTTTATTATTCAGATACGCCCTGTGTGTATATGGAAGGCATGGAATCTAAGCAGGTCGATTATGTCCCATTGAGAAGCGCTACATGCATCACAAGATGCAATTTAGGTGGCGCTGTTTGTTTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTATAACCTTTGGAATACTTTTACTAGGCTCCAA >Penn_97_1_nsp14_VIPR_ALG4_7769342_17996_19558_1_NA_NA_Unknown_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAGAAGCTATGCAGGTTATCACCCAGCTCATGCGCCTTCCTTTTTGGCAGTTGATGATAAATATAAGGTAGGTGGCGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACTAGAGATGAAGCTATCAGACGTGTTAGAGCCTGGGTAGGCTTTGATGCAGAAGGTGCCCATGCGACGCGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTTGTTGTCGAGGCCACTGGAATGTTTGCCGAGAGAGATGGCTACGTCTTTAAAAAGGCAGTGGCACGAGCACCTCCCGGCGAACAATTTAAACACCTCGTCCCACTTATGTCTAGAGGACAGAAATGGGACGTGGTTCGAATTCGAATAGTACAAATGCTGTCAGACCACTTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTCGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAAAGAAGTTGTGTGTAGTGTCTGCAACAAGCGTGCGACATGTTTTAATTCTAGGACTGGGTACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTATAACCCACTAATAGTTGATATTCAACAGTGGGGATATACTGGGTCTTTAACTAGCAATCATGACCTCATTTGCAGCGTGCATAAGGGTGCTCATGTCGCATCTTCTGATGCTATCATGACCCGATGCTTAGCTGTCCATGATTGCTTTTGCAAATCTGTTAATTGGAGTTTAGAATACCCCATTATCTCAAATGAGGTTAGTGTTAATACCTCCTGCAGGTTATTGCAGCGTGTAATGTTTAGGGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAAGGTCTTGCCTGTGTCAAAGGCTATGATTTTAAGTTTTATGATGCCTCTCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAGTATGAGGCACATAAAGATCAATTTTTAGATGGTTTATGTATGTTTTGGAACTGCAATGTGGATAAGTATCCCGCGAATGCAGTTGTATGTAGGTTTGACACGAGAGTGTTAAACAAATTAAATCTCCCTGGCTGTAATGGTGGTAGTCTGTATGTTAATAAACATGCATTCCACACCAGTCCCTTTACGCGGGCAGCCTTCGAGAATTTGAAGCCTATGCCTTTCTTTTATTACTCAGATACGCCTTGTGTGTATATGGAGGGCATGGAGTCTAAGCAGGTCGATTATGTCCCATTGAGAAGCGCCACTTGCATTACAAGATGCAATTTAGGTGGCGCTGTTTGTTTAAAACATGCTGAGGATTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACCTTTTGGGTCTATAAGACTTTTGATTTTTACAACCTTTGGAATACTTTTACTAGGCTCCAA >RA59_SJHM_nsp14_VIPR_ALG4_225403218_18122_19684_1_NA_USA_Mouse_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAGGAGCTATGTAGGATATCACCCAGCCCATGCACCATCCTTTTTGGCAGTTGATGACAAATATAAGGTAGGCGGTGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACTAGAGATGAAGCTATCAAACGTGTTAGAGCCTGGGTTGGCTTCGATGCAGAAGGTGCCCATGCGATACGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTTGTTGTCGAAGCCACTGGAATGTTTGCTGAGAGAGATGGTTATGTCTTTAAAAAGGCAGCCGCACGAGCTCCTCCTGGCGAACAATTTAAACACCTTATCCCACTTATGTCAAGAGGGCAGAAATGGGATGTGGTTCGAATTAGAATAGTACAAATGTTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTTGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAGAGAAGTTGTGTGTAGTGTCTGCACCAAGCGTGCGACATGTTTTAATTCTAGAACTGGATACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTACAACCCACTAATAGTTGACATTCAACAGTGGGGATATACAGGATCTTTAACTAGCAATCATGATCCTATTTGCAGCGTGCATAAGGGTGCTCATGTTGCATCATCTGATGCTATCATGACCCGGTGTCTAGCTGTTCATGATTGCTTTTGTAAGTCTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTCAGTGTTAATACCTCCTGCAGGTTATTGCAGCGCGTAATGTTTAGGGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAAGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAATACGAGGCACATAAAGATCAATTTTTAGATGGTTTGTGTATGTTTTGGAACTGCAATGTGGATAAGTATCCAGCGAATGCAGTTGTGTGTAGGTTTGACACGCGTGTGTTGAACAAATTAAATCTCCCTGGCTGTAATGGTGGCAGTTTGTATGTTAACAAACATGCATTCCACACCAGTCCCTTTACCCGGGCTGCCTTCGAGAATTTGAAGCCTATGCCTTTCTTTTATTATTCAGATACGCCCTGTGTGTATATGGAAGGCATGGAATCTAAGCAGGTCGATTATGTCCCATTGAGAAGCGCTACATGCATCACAAGATGCAATTTAGGTGGCGCTGTTTGTTTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTATAACCTTTGGAATACTTTTACTAGGCTCCAA >RJHM_A_nsp14_VIPR_ALG4_225403212_18128_19690_1_NA_USA_Mouse_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAAGAGCTATGTAGGTTATCACCCGGCCCATGCGCCTTCCTTTTTGGCAGTTGATGATAAATATAAGGTAAGTGGCGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACAAGAGATGAAGCTATCAAACGTGTTAGAGCTTGGGTGGGCTTCGATGCAGAAGGTGCTCATGCGACGCGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTCGTCGTCGAGGCCACTGGAATGTTTGCTGAGAGAGATGGCTACGTCTTTAAAAAGGCAGCCGCACGAGCACCTCCCGGCGAACAATTTAAACACCTCGTCCCACTTATGTCTAGAGGACAGAAATGGGACGTGGTTCGAATTCGAATAGTACAAATGCTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTCGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAAAGAAGTTGTGTGTAGTGTCTGCAACAAGCGTGCGACATGTTTTAATTCTAGAACTGGGTACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTACAACCCACTAATAGTTGACATTCAACAGTGGGGATATACAGGATCTTTAACTAGCAATCATGATCCTATTTGCAGCGTGCATAAGGGTGCTCATGTCGCATCATCCGATGCTATCATGACTCGATGCTTAGCTGTCCATGATTGCTTTTGTAAGTCTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTCAGTGTTAATACCTCCTGCAGGTTATTGCAGCGCGTAATGTTCAGAGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAGGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAGTACGAGGCACATAAAGATCAATTTTTAGATGGTTTATGTATGTTCTGGAACTGCAATGTGGATAAGTATCCCGCGAATGCAGTTGTCTGTAGGTTTGACACGCGAGTGTTAAGCAAATTAAATCTCCCTGGCTGTAATGGCGGTAGTCTGTATGTTAATAAACATGCATTCCACACCAATCCCTTTACGCGGGCTGCCTTCGAGAATTTAAAGCCTATGCCGTTCTTTTATTATTCAGATACGCCTTGTGTGTATATGGAAGGCATGGAGTCTAAGCAGGTCGATTATGTCCCACTAAGAAGCGCCACTTGCATTACAAGATGCAATTTAGGGGGTGCTGTTTGTCTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTACAACCTTTGGAATACTTTTACTAGGCTCCAA >SA59_RJHM_nsp14_VIPR_ALG4_225403240_18128_19690_1_NA_USA_Mouse_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAAGAGCTATGTAGGTTATCACCCGGCCCATGCGCCTTCCTTTTTGGCAGTTGATGATAAATATAAGGTAAGTGGCGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACAAGAGATGAAGCTATCAAACGTGTTAGAGCTTGGGTGGGCTTCGATGCAGAAGGTGCTCATGCGACGCGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTCGTCGTCGAGGCCACTGGAATGTTTGCTGAGAGAGATGGCTACGTCTTTAAAAAGGCAGCCGCACGAGCACCTCCCGGCGAACAATTTAAACACCTCGTCCCACTTATGTCTAGAGGACAGAAATGGGACGTGGTTCGAATTCGAATAGTACAAATGCTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTCGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAAAGAAGTTGTGTGTAGTGTCTGCAACAAGCGTGCGACATGTTTTAATTCTAGAACTGGGTACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTACAACCCACTAATAGTTGACATTCAACAGTGGGGATATACAGGATCTTTAACTAGCAATCATGATCCTATTTGCAGCGTGCATAAGGGTGCTCATGTCGCATCATCCGATGCTATCATGACTCGATGCTTAGCTGTCCATGATTGCTTTTGTAAGTCTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTCAGTGTTAATACCTCCTGCAGGTTATTGCAGCGCGTAATGTTCAGAGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAGGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAGTACGAGGCACATAAAGATCAATTTTTAGATGGTTTATGTATGTTCTGGAACTGCAATGTGGATAAGTATCCCGCGAATGCAGTTGTCTGTAGGTTTGACACGCGAGTGTTAAGCAAATTAAATCTCCCTGGCTGTAATGGCGGTAGTCTGTATGTTAATAAACATGCATTCCACACCAATCCCTTTACGCGGGCTGCCTTCGAGAATTTAAAGCCTATGCCGTTCTTTTATTATTCAGATACGCCTTGTGTGTATATGGAAGGCATGGAGTCTAAGCAGGTCGATTATGTCCCACTAAGAAGCGCCACTTGCATTACAAGATGCAATTTAGGGGGTGCTGTTTGTCTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTACAACCTTTGGAATACTTTTACTAGGCTCCAA >S_nsp14_VIPR_ALG4_298199703_18165_19727_1_NA_USA_Mouse_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAGGAGCTATGAGGGATATCACCCAGCCCATGCACCATCCTTTTTGGCAGTTGATGACAAATATAAGGTAGGCGGTGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACAAGAGATGAAGCTATCAAACGTGTTAGAGCTTGGGTGGGCTTCGATGCAGAAGGTGCTCATGCGACGCGTGATAGCATTGGGACAAATTTCCCACTACAATTAGGCTTTTCGACTGGAATAGATTTCGTTGTCGAGGCCACTGGAATGTTTGCTGAGAGAGATGGCTATGTCTTTAAGAAGGCAGTGGCACGAGCTCCTCCCGGCGATCAATTTAAACACCTCGTTCCACTTATGTCAAGAGGACAGAAGTGGGATGTGGTTCGAACTCGAATAGTACAAATGCTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTTGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAAAGAAGTTGTATGTAGTGTCTGCAACAAGCGTGCGACATGTTTTAATTCTAGAACTGGGTATTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTACAACCCACTAATAGTTGATATTCAACAGTGGGGGTATACAGGGTCTTTAACTAGCAATCACGATCCCATTTGCAGCGTGCATAAGGGTGCTCATGTTGCATCATCTGATGCTATCATGACCCGGTGTCTAGCTGTTCATGATTGCTTTTGTAAGTTTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTTAGTGTTAATGCCTCCTGCAGGTCATTGCAGCGCGTAATGTTTAGGGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAAGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAGTACGAGGCACATAAAGATCAATTTTTAGATGGTTTATGTATGTTTTGGAACTGCAATGTGGATAAGTATCCCGCGAATGCAGTTGTGTGTAGGTTTGACACGCGTGTGTTGAACAAATTAAATCTCCCTGGCTGTAATGGTGGTAGTCTGTATGTTAATAAACATGCATTCCACACCAGTCCCTTCACCCGGGCTGCCTTCGAGAATTTGAAGCCTATGCCTTTCTTTTATTATTCAGATACGCCTTGTGTGTATATGGAAGGCATGGAATCTAAGCAGGTCGATTATGTCCCATTGAGAAGCGCCACATGCATCACAAGATGCAATTTAGGTGGCGCTGTTTGTTTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTACAACCTTTGGAATACTTTTACTAGGCTCCAA >UNKNOWN_AC_000192_nsp14_VIPR_ALG4_YP_209229_2_18178_19734_1_NA_NA_Unknown_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAAGAGCTATGTAGGTATACCGCCA------TGCGCCTTCCTTTTGGCAGTTGATGATAAATATAAGGTAAGTGGCAATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACAAGAGATGAAGCTATCAAACGTGTTAGAGCTTGGGTGGGCTTCGATGCAGAAGGTGCTCATGCGACGCGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTCGTCGTCGAGGCCACTGGAATGTTTGCTGAGAGAGATGGCTACGTCTTTAAAAAGGCAGCCGCACGAGCACCTCCCGGCGAACAATTTAAACACCTCGTCCCACTTATGTCTAGAGGACAGAAATGGGACGTGGTTCGAATTCGAATAGTACAAATGCTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTCGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAAAGAAGTTGTGTGTAGTGTCTGCAACAAGCGTGCGACATGTTTTAATTCTAGAACTGGGTACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTATAACCCACTAATAGTTGACATTCAACAGTGGGGATATACAGGATCTTTAACTAGCAATCATGATCCTATTTGCAGCGTGCATAAGGGTGCTCATGTCGCATCATCCGATGCTATCATGACTCGATGCTTAGCTGTCCATGATTGCTTTTGTAAGTCTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTCAGTGTTAATACCTCCTGCAGGTTATTGCAGCGCGTAATGTTCAGAGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAGGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAGTACGAGGCACATAAAGATCAATTTTTAGATGGTTTATGTATGTTCTGGAACTGCAATGTGGATAAGTATCCCGCGAATGCAGTTGTCTGTAGGTTTGACACGCGAGTGTTAAGCAAATTAAATCTCCCTGGCTGTAATGGCGGTAGTCTGTATGTTAATAAACATGCATTCCACACCAATCCCTTTACGCGGGCTGCCTTCGAGAATTTAAAGCCTATGCCGTTCTTTTATTATTCAGATACGCCTTGTGTGTATATGGAAGGCATGGAGTCTAAGCAGGTCGATTATGTCCCACTAAGAAGCGCCACTTGCATTACAAGATGCAATTTAGGGGGTGCTGTTTGTCTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCTACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTACAACCTTTGGAATACTTTTACTAGGCTCCAA >inf_MHV_A59_nsp14_VIPR_ALG4_225403276_18136_19698_1_NA_USA_Mouse_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAGGAGCTATGTAGGATATCACCCAGCCCATGCACCATCCTTTTTGGCAGTTGATGACAAATATAAGGTAGGCGGTGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACTAGAGATGAAGCTATCAAACGTGTTAGAGCCTGGGTTGGCTTCGATGCAGAAGGTGCCCATGCGATACGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTTGTTGTCGAAGCCACTGGAATGTTTGCTGAGAGAGATGGTTATGTCTTTAAAAAGGCAGCCGCACGAGCTCCTCCTGGCGAACAATTTAAACACCTTATCCCACTTATGTCAAGAGGGCAGAAATGGGATGTGGTTCGCATTAGAATAGTACAAATGTTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTTGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAGAGAAGTTGTGTGTAGTGTCTGCACCAAGCGTGCGACATGTTTTAATTCTAGAACTGGATACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTACAACCCACTAATAGTTGACATTCAACAGTGGGGATATACAGGATCTTTAACTAGCAATCATGATCCTATTTGCAGCGTGCATAAGGGTGCTCATGTTGCATCATCTGATGCTATCATGACCCGGTGTCTAGCTGTTCATGATTGCTTTTGTAAGTCTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTCAGTGTTAATACCTCCTGCAGGTTATTGCAGCGCGTAATGTTTAGGGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAAGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAATACGAGGCACATAAAGATCAATTTTTAGATGGTTTGTGTATGTTTTGGAACTGCAATGTGGATAAGTATCCAGCGAATGCAGTTGTGTGTAGGTTTGACACGCGTGTGTTGAACAAATTAAATCTCCCTGGCTGTAATGGTGGCAGTTTGTATGTTAACAAACATGCATTCCACACCAGTCCCTTTACCCGGGCTGCCTTCGAGAATTTGAAGCCTATGCCTTTCTTTTATTATTCAGATACGCCCTGTGTGTATATGGAAGGCATGGAATCTAAGCAGGTCGATTATGTCCCATTGAGAAGCGCTACATGCATCACAAGATGCAATTTAGGTGGCGCTGTTTGTTTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTATAACCTTTGGAATACTTTTACTAGGCTCCAA >repJHM_RA59_nsp14_VIPR_ALG4_225403293_18111_19673_1_NA_USA_Mouse_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAAGAGCTATGTAGGTTATCACCCGGCCCATGCGCCTTCCTTTTTGGCAGTTGATGATAAATATAAGGTAAGTGGCGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACAAGAGATGAAGCTATCAAACGTGTTAGAGCTTGGGTGGGCTTCGATGCAGAAGGTGCTCATGCGACGCGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTCGTCGTCGAGGCCACTGGAATGTTTGCTGAGAGAGATGGCTACGTCTTTAAAAAGGCAGCCGCACGAGCACCTCCCGGCGAACAATTTAAACACCTCGTCCCACTTATGTCTAGAGGACAGAAATGGGACGTGGTTCGAATTCGAATAGTACAAATGCTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTCGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAAAGAAGTTGTGTGTAGTGTCTGCAACAAGCGTGCGACATGTTTTAATTCTAGAACTGGGTACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTACAACCCACTAATAGTTGACATTCAACAGTGGGGATATACAGGATCTTTAACTAGCAATCATGATCCTATTTGCAGCGTGCATAAGGGTGCTCATGTCGCATCATCCGATGCTATCATGACTCGATGCTTAGCTGTCCATGATTGCTTTTGTAAGTCTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTCAGTGTTAATACCTCCTGCAGGTTATTGCAGCGCGTAATGTTCAGAGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAGGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAGTACGAGGCACATAAAGATCAATTTTTAGATGGTTTATGTATGTTCTGGAACTGCAATGTGGATAAGTATCCCGCGAATGCAGTTGTCTGTAGGTTTGACACGCGAGTGTTAAGCAAATTAAATCTCCCTGGCTGTAATGGCGGTAGTCTGTATGTTAATAAACATGCATTCCACACCAATCCCTTTACGCGGGCTGCCTTCGAGAATTTAAAGCCTATGCCGTTCTTTTATTATTCAGATACGCCTTGTGTGTATATGGAAGGCATGGAGTCTAAGCAGGTCGATTATGTCCCACTAAGAAGCGCCACTTGCATTACAAGATGCAATTTAGGGGGTGCTGTTTGTCTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTACAACCTTTGGAATACTTTTACTAGGCTCCAA >repA59_RJHM_nsp14_VIPR_ALG4_225403235_18133_19695_1_NA_USA_Mouse_Murine_coronavirus TGTACTACAAATTTGTTTAAGGATTGTAGCAGGAGCTATGTAGGATATCACCCAGCCCATGCACCATCCTTTTTGGCAGTTGATGACAAATATAAGGTAGGCGGTGATTTAGCCGTTTGCCTTAATGTTGCTGATTCTGCTGTCACTTATTCGCGGCTTATATCACTCATGGGATTCAAGCTTGACTTGACCCTTGATGGTTATTGTAAGCTGTTTATAACTAGAGATGAAGCTATCAAACGTGTTAGAGCCTGGGTTGGCTTCGATGCAGAAGGTGCCCATGCGATACGTGATAGCATTGGGACAAATTTCCCATTACAATTAGGCTTTTCGACTGGAATTGATTTTGTTGTCGAAGCCACTGGAATGTTTGCTGAGAGAGATGGTTATGTCTTTAAAAAGGCAGCCGCACGAGCTCCTCCTGGCGAACAATTTAAACACCTTATCCCACTTATGTCAAGAGGGCAGAAATGGGATGTGGTTCGAATTAGAATAGTACAAATGTTGTCAGACCACCTAGTGGATTTGGCAGACAGTGTTGTACTTGTGACGTGGGCTGCCAGCTTTGAGCTCACATGTTTGCGATATTTCGCTAAAGTTGGAAGAGAAGTTGTGTGTAGTGTCTGCACCAAGCGTGCGACATGTTTTAATTCTAGAACTGGATACTATGGATGCTGGCGACATAGTTATTCCTGTGATTACCTGTACAACCCACTAATAGTTGACATTCAACAGTGGGGATATACAGGATCTTTAACTAGCAATCATGATCCTATTTGCAGCGTGCATAAGGGTGCTCATGTTGCATCATCTGATGCTATCATGACCCGGTGTCTAGCTGTTCATGATTGCTTTTGTAAGTCTGTTAATTGGAATTTAGAATACCCCATTATTTCAAATGAGGTCAGTGTTAATACCTCCTGCAGGTTATTGCAGCGCGTAATGTTTAGGGCTGCGATGCTATGCAATAGGTATGATGTGTGTTATGACATTGGCAACCCTAAAGGTCTTGCCTGTGTCAAAGGATATGATTTTAAGTTTTATGATGCCTCCCCTGTTGTTAAGTCTGTTAAACAGTTTGTTTATAAATACGAGGCACATAAAGATCAATTTTTAGATGGTTTGTGTATGTTTTGGAACTGCAATGTGGATAAGTATCCAGCGAATGCAGTTGTGTGTAGGTTTGACACGCGTGTGTTGAACAAATTAAATCTCCCTGGCTGTAATGGTGGCAGTTTGTATGTTAACAAACATGCATTCCACACCAGTCCCTTTACCCGGGCTGCCTTCGAGAATTTGAAGCCTATGCCTTTCTTTTATTATTCAGATACGCCCTGTGTGTATATGGAAGGCATGGAATCTAAGCAGGTCGATTATGTCCCATTGAGAAGCGCTACATGCATCACAAGATGCAATTTAGGTGGCGCTGTTTGTTTAAAACATGCTGAGGAGTATCGTGAGTACCTTGAGTCTTACAATACGGCAACCACAGCGGGTTTTACTTTTTGGGTCTATAAGACTTTTGATTTTTATAACCTTTGGAATACTTTTACTAGGCTCCAA
>681_nsp14_VIPR_ALG4_381354058_18128_19690_1_NA_NA_Rat_Murine_coronavirus CTTNLFKDCSKSYIGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVPLLSRGQKWDEVRIRIVPMVSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIEQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDLFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMDSKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFAKLQ >A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >JHM_WU_nsp14_VIPR_ALG4_397136020_18154_19716_1_1947_08_14_USA_Unknown_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLSKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >JHM_WU_Dns2_nsp14_VIPR_ALG4_397136010_18150_19712_1_1947_08_14_USA_Unknown_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLSKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >MHV_1_nsp14_VIPR_ALG4_225403254_18106_19668_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVMCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDQICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >MHV_2_nsp14_VIPR_ALG4_6625761_17999_19561_1_NA_NA_Unknown_Murine_coronavirus CTTNLFKDCSRSYAGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIRRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDLICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWSLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEDYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >MHV_3_nsp14_VIPR_ALG4_225403266_18105_19667_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVPLMSRGQKWEVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVMCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDQICSMHKGAHVASSDAIMTRCLAVHDCFCKSVNWNVEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTIPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCVKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >MHV_BHKR_lab_USA_infA59_H126A_2012_nsp14_VIPR_ALG4_530290989_18140_19702_1_2012_10_25_USA_Mouse_Murine_coronavirus CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >MHV_JHM_IA_nsp14_VIPR_ALG4_225403291_18150_19712_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLSKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >MHV_MI_nsp14_VIPR_ALG4_293330423_18090_19652_1_1994_Australia_Mouse_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIPLMARGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDQICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNVEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDLFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCVKHAEEYREYLESYNTATTAGFTFWVYRTFDFYNLWNTFTRLQ >MHV_S_3239_17_nsp14_VIPR_ALG4_380706996_18165_19727_1_NA_NA_Unknown_Murine_coronavirus CTTNLFKDCSRSYEGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGDQFKHLVPLMSRGQKWDVVRTRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKFVNWNLEYPIISNEVSVNASCRSLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >ML_10_nsp14_VIPR_ALG4_7769353_18152_19714_1_NA_NA_Unknown_Murine_coronavirus CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVSYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >ML_11_nsp14_VIPR_ALG4_7739595_17999_19561_1_NA_NA_Unknown_Murine_coronavirus CTTNLFKDCSRSYAGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIRRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDLICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWSLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEDYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >Parker_ORF1ab_YP_009924380_1_NA_NA_Rat_Murine_coronavirus CTTNLFKDCSKSYDGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSSVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEATGMFAEREGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIILNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >RA59_R13_nsp14_VIPR_ALG4_225403203_18138_19700_1_2006_01_01_USA_Mouse_Murine_coronavirus CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >Penn_97_1_nsp14_VIPR_ALG4_7769342_17996_19558_1_NA_NA_Unknown_Murine_coronavirus CTTNLFKDCSRSYAGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIRRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDLICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWSLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEDYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >RA59_SJHM_nsp14_VIPR_ALG4_225403218_18122_19684_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >RJHM_A_nsp14_VIPR_ALG4_225403212_18128_19690_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLSKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >SA59_RJHM_nsp14_VIPR_ALG4_225403240_18128_19690_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLSKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >S_nsp14_VIPR_ALG4_298199703_18165_19727_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSRSYEGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAVARAPPGDQFKHLVPLMSRGQKWDVVRTRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKFVNWNLEYPIISNEVSVNASCRSLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >UNKNOWN_AC_000192_nsp14_VIPR_ALG4_YP_209229_2_18178_19734_1_NA_NA_Unknown_Murine_coronavirus CTTNLFKDCSKSYVGIPP--CAFLLAVDDKYKVSGNLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLSKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >inf_MHV_A59_nsp14_VIPR_ALG4_225403276_18136_19698_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >repJHM_RA59_nsp14_VIPR_ALG4_225403293_18111_19673_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSKSYVGYHPAHAPSFLAVDDKYKVSGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLSKLNLPGCNGGSLYVNKHAFHTNPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ >repA59_RJHM_nsp14_VIPR_ALG4_225403235_18133_19695_1_NA_USA_Mouse_Murine_coronavirus CTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGFKLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVEATGMFAERDGYVFKKAAARAPPGEQFKHLIPLMSRGQKWDVVRIRIVQMLSDHLVDLADSVVLVTWAASFELTCLRYFAKVGREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPLIVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIISNEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKGYDFKFYDASPVVKSVKQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNKHAFHTSPFTRAAFENLKPMPFFYYSDTPCVYMEGMESKQVDYVPLRSATCITRCNLGGAVCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ
Reading sequence file /data//pss_subsets/A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/codeml/fasta/A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus.result.1
Found 24 sequences of length 1563
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 3.9%
Found 151 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0% 88.7%100.0%
Using a window size of 80 with k as 8
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 145 polymorphic sites
**p-Value(s)**
----------
NSS: 0.00e+00 (1000 permutations)
Max Chi^2: 1.96e-01 (1000 permutations)
PHI (Permutation): 0.00e+00 (1000 permutations)
PHI (Normal): 7.11e-10
#NEXUS
[ID: 9341765799]
begin taxa;
dimensions ntax=24;
taxlabels
681_nsp14_VIPR_ALG4_381354058_18128_19690_1_NA_NA_Rat_Murine_coronavirus
MHV_MI_nsp14_VIPR_ALG4_293330423_18090_19652_1_1994_Australia_Mouse_Murine_coronavirus
MHV_S_3239_17_nsp14_VIPR_ALG4_380706996_18165_19727_1_NA_NA_Unknown_Murine_coronavirus
ML_10_nsp14_VIPR_ALG4_7769353_18152_19714_1_NA_NA_Unknown_Murine_coronavirus
ML_11_nsp14_VIPR_ALG4_7739595_17999_19561_1_NA_NA_Unknown_Murine_coronavirus
Parker_ORF1ab_YP_009924380_1_NA_NA_Rat_Murine_coronavirus
RA59_R13_nsp14_VIPR_ALG4_225403203_18138_19700_1_2006_01_01_USA_Mouse_Murine_coronavirus
Penn_97_1_nsp14_VIPR_ALG4_7769342_17996_19558_1_NA_NA_Unknown_Murine_coronavirus
RA59_SJHM_nsp14_VIPR_ALG4_225403218_18122_19684_1_NA_USA_Mouse_Murine_coronavirus
RJHM_A_nsp14_VIPR_ALG4_225403212_18128_19690_1_NA_USA_Mouse_Murine_coronavirus
SA59_RJHM_nsp14_VIPR_ALG4_225403240_18128_19690_1_NA_USA_Mouse_Murine_coronavirus
A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus
S_nsp14_VIPR_ALG4_298199703_18165_19727_1_NA_USA_Mouse_Murine_coronavirus
UNKNOWN_AC_000192_nsp14_VIPR_ALG4_YP_209229_2_18178_19734_1_NA_NA_Unknown_Murine_coronavirus
inf_MHV_A59_nsp14_VIPR_ALG4_225403276_18136_19698_1_NA_USA_Mouse_Murine_coronavirus
repJHM_RA59_nsp14_VIPR_ALG4_225403293_18111_19673_1_NA_USA_Mouse_Murine_coronavirus
repA59_RJHM_nsp14_VIPR_ALG4_225403235_18133_19695_1_NA_USA_Mouse_Murine_coronavirus
JHM_WU_nsp14_VIPR_ALG4_397136020_18154_19716_1_1947_08_14_USA_Unknown_Murine_coronavirus
JHM_WU_Dns2_nsp14_VIPR_ALG4_397136010_18150_19712_1_1947_08_14_USA_Unknown_Murine_coronavirus
MHV_1_nsp14_VIPR_ALG4_225403254_18106_19668_1_NA_USA_Mouse_Murine_coronavirus
MHV_2_nsp14_VIPR_ALG4_6625761_17999_19561_1_NA_NA_Unknown_Murine_coronavirus
MHV_3_nsp14_VIPR_ALG4_225403266_18105_19667_1_NA_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp14_VIPR_ALG4_530290989_18140_19702_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_JHM_IA_nsp14_VIPR_ALG4_225403291_18150_19712_1_NA_USA_Mouse_Murine_coronavirus
;
end;
begin trees;
translate
1 681_nsp14_VIPR_ALG4_381354058_18128_19690_1_NA_NA_Rat_Murine_coronavirus,
2 MHV_MI_nsp14_VIPR_ALG4_293330423_18090_19652_1_1994_Australia_Mouse_Murine_coronavirus,
3 MHV_S_3239_17_nsp14_VIPR_ALG4_380706996_18165_19727_1_NA_NA_Unknown_Murine_coronavirus,
4 ML_10_nsp14_VIPR_ALG4_7769353_18152_19714_1_NA_NA_Unknown_Murine_coronavirus,
5 ML_11_nsp14_VIPR_ALG4_7739595_17999_19561_1_NA_NA_Unknown_Murine_coronavirus,
6 Parker_ORF1ab_YP_009924380_1_NA_NA_Rat_Murine_coronavirus,
7 RA59_R13_nsp14_VIPR_ALG4_225403203_18138_19700_1_2006_01_01_USA_Mouse_Murine_coronavirus,
8 Penn_97_1_nsp14_VIPR_ALG4_7769342_17996_19558_1_NA_NA_Unknown_Murine_coronavirus,
9 RA59_SJHM_nsp14_VIPR_ALG4_225403218_18122_19684_1_NA_USA_Mouse_Murine_coronavirus,
10 RJHM_A_nsp14_VIPR_ALG4_225403212_18128_19690_1_NA_USA_Mouse_Murine_coronavirus,
11 SA59_RJHM_nsp14_VIPR_ALG4_225403240_18128_19690_1_NA_USA_Mouse_Murine_coronavirus,
12 A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus,
13 S_nsp14_VIPR_ALG4_298199703_18165_19727_1_NA_USA_Mouse_Murine_coronavirus,
14 UNKNOWN_AC_000192_nsp14_VIPR_ALG4_YP_209229_2_18178_19734_1_NA_NA_Unknown_Murine_coronavirus,
15 inf_MHV_A59_nsp14_VIPR_ALG4_225403276_18136_19698_1_NA_USA_Mouse_Murine_coronavirus,
16 repJHM_RA59_nsp14_VIPR_ALG4_225403293_18111_19673_1_NA_USA_Mouse_Murine_coronavirus,
17 repA59_RJHM_nsp14_VIPR_ALG4_225403235_18133_19695_1_NA_USA_Mouse_Murine_coronavirus,
18 JHM_WU_nsp14_VIPR_ALG4_397136020_18154_19716_1_1947_08_14_USA_Unknown_Murine_coronavirus,
19 JHM_WU_Dns2_nsp14_VIPR_ALG4_397136010_18150_19712_1_1947_08_14_USA_Unknown_Murine_coronavirus,
20 MHV_1_nsp14_VIPR_ALG4_225403254_18106_19668_1_NA_USA_Mouse_Murine_coronavirus,
21 MHV_2_nsp14_VIPR_ALG4_6625761_17999_19561_1_NA_NA_Unknown_Murine_coronavirus,
22 MHV_3_nsp14_VIPR_ALG4_225403266_18105_19667_1_NA_USA_Mouse_Murine_coronavirus,
23 MHV_BHKR_lab_USA_infA59_H126A_2012_nsp14_VIPR_ALG4_530290989_18140_19702_1_2012_10_25_USA_Mouse_Murine_coronavirus,
24 MHV_JHM_IA_nsp14_VIPR_ALG4_225403291_18150_19712_1_NA_USA_Mouse_Murine_coronavirus
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:3.967888e-02,6:2.947181e-02,(((((2:5.452368e-02,22:3.078119e-02)0.868:1.542166e-02,20:1.570718e-02)0.984:2.462447e-02,(5:5.965835e-04,8:6.327802e-04,21:5.944384e-04)1.000:3.558004e-02)0.753:8.394480e-03,(10:5.825500e-04,11:5.864357e-04,(14:1.402252e-02,18:6.120217e-04,19:5.761137e-04)0.969:1.441126e-03,16:5.765444e-04,24:5.656182e-04)1.000:2.262829e-02)0.988:2.059532e-02,((3:6.151755e-04,13:6.303457e-04)1.000:2.345834e-02,(4:1.446876e-03,7:6.361328e-04,9:5.941845e-04,(12:6.134857e-04,15:5.856424e-04,23:6.000393e-04)0.984:1.480061e-03,17:6.034460e-04)1.000:2.968670e-02)0.819:9.351270e-03)1.000:2.708123e-02);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:3.967888e-02,6:2.947181e-02,(((((2:5.452368e-02,22:3.078119e-02):1.542166e-02,20:1.570718e-02):2.462447e-02,(5:5.965835e-04,8:6.327802e-04,21:5.944384e-04):3.558004e-02):8.394480e-03,(10:5.825500e-04,11:5.864357e-04,(14:1.402252e-02,18:6.120217e-04,19:5.761137e-04):1.441126e-03,16:5.765444e-04,24:5.656182e-04):2.262829e-02):2.059532e-02,((3:6.151755e-04,13:6.303457e-04):2.345834e-02,(4:1.446876e-03,7:6.361328e-04,9:5.941845e-04,(12:6.134857e-04,15:5.856424e-04,23:6.000393e-04):1.480061e-03,17:6.034460e-04):2.968670e-02):9.351270e-03):2.708123e-02);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -4066.57 -4093.35
2 -4064.60 -4097.90
--------------------------------------
TOTAL -4065.16 -4097.22
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.437964 0.001914 0.355542 0.524915 0.434708 1328.03 1371.98 1.001
r(A<->C){all} 0.102679 0.000414 0.062191 0.139893 0.102016 716.84 822.05 1.000
r(A<->G){all} 0.282874 0.001322 0.212033 0.354075 0.281904 599.73 673.53 1.000
r(A<->T){all} 0.057600 0.000147 0.034269 0.082270 0.056877 968.59 997.28 1.000
r(C<->G){all} 0.044771 0.000207 0.018836 0.072071 0.044060 963.13 1021.69 1.001
r(C<->T){all} 0.475030 0.001515 0.406121 0.554614 0.474503 597.16 620.82 1.000
r(G<->T){all} 0.037046 0.000105 0.018239 0.057271 0.036306 1197.02 1208.72 1.002
pi(A){all} 0.255817 0.000122 0.233358 0.276316 0.255880 964.46 1044.54 1.000
pi(C){all} 0.183135 0.000085 0.165362 0.200939 0.182872 1043.14 1083.57 1.002
pi(G){all} 0.234083 0.000116 0.211600 0.253639 0.234092 907.97 989.04 1.001
pi(T){all} 0.326966 0.000137 0.304612 0.349515 0.326663 1155.44 1233.85 1.000
alpha{1,2} 0.187820 0.000960 0.134238 0.249917 0.183866 1215.26 1332.56 1.000
alpha{3} 3.923657 2.216696 1.560366 6.920324 3.655199 1251.52 1376.26 1.000
pinvar{all} 0.676020 0.000762 0.624873 0.729291 0.677365 1259.36 1299.90 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/A59_ORF1ab_YP_009924354_1_NA_USA_Unknown_Murine_coronavirus.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 24 ls = 519
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 25 25 21 21 25 25 | Ser TCT 8 8 8 8 10 11 | Tyr TAT 26 24 22 22 20 23 | Cys TGT 16 16 15 15 15 14
TTC 7 7 11 11 7 7 | TCC 6 4 5 5 2 3 | TAC 5 7 9 9 11 8 | TGC 10 10 11 11 11 12
Leu TTA 11 10 13 13 14 14 | TCA 4 6 5 5 6 4 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 10 12 6 6 7 8 | TCG 2 2 2 2 2 2 | TAG 0 0 0 0 0 0 | Trp TGG 9 9 9 9 9 9
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 8 10 9 9 9 9 | Pro CCT 9 8 8 8 8 8 | His CAT 9 9 9 9 9 9 | Arg CGT 4 5 4 4 4 5
CTC 6 4 5 5 5 6 | CCC 3 3 4 4 3 4 | CAC 4 4 4 4 4 4 | CGC 1 2 1 1 1 0
CTA 3 4 5 5 3 2 | CCA 6 7 4 4 5 5 | Gln CAA 3 6 6 6 7 6 | CGA 6 3 7 7 7 6
CTG 5 2 4 4 4 4 | CCG 1 0 2 2 1 0 | CAG 5 5 5 5 5 5 | CGG 2 3 2 2 1 2
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 9 8 9 9 8 8 | Thr ACT 10 11 12 12 10 12 | Asn AAT 19 18 20 20 18 18 | Ser AGT 5 6 6 6 7 7
ATC 2 4 2 2 3 3 | ACC 4 7 4 4 7 6 | AAC 6 6 5 5 7 6 | AGC 8 7 8 8 6 7
ATA 5 5 4 4 5 4 | ACA 9 8 8 8 7 6 | Lys AAA 15 14 13 13 14 14 | Arg AGA 6 9 8 8 8 9
Met ATG 10 11 11 11 12 11 | ACG 6 4 6 6 5 6 | AAG 16 14 17 17 16 14 | AGG 6 6 4 4 5 6
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 21 22 18 18 18 20 | Ala GCT 17 15 16 16 13 11 | Asp GAT 26 25 25 25 26 26 | Gly GGT 11 10 9 9 11 11
GTC 11 9 14 14 12 11 | GCC 8 9 8 8 9 10 | GAC 7 7 7 7 6 7 | GGC 9 9 9 9 9 10
GTA 7 5 5 5 5 6 | GCA 11 11 10 10 12 13 | Glu GAA 7 8 6 6 6 5 | GGA 7 10 9 9 9 7
GTG 7 10 10 10 12 10 | GCG 5 5 6 6 5 6 | GAG 11 9 11 11 11 11 | GGG 4 2 3 3 2 3
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 24 25 21 24 24 25 | Ser TCT 10 8 8 10 7 8 | Tyr TAT 22 24 22 22 24 24 | Cys TGT 14 16 15 14 16 16
TTC 8 7 11 8 9 7 | TCC 2 4 5 2 4 4 | TAC 9 7 9 9 7 7 | TGC 12 10 11 12 10 10
Leu TTA 11 10 13 10 9 10 | TCA 4 6 5 5 7 6 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 9 12 6 10 9 12 | TCG 4 2 2 2 2 2 | TAG 0 0 0 0 0 0 | Trp TGG 9 9 9 9 9 9
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 7 10 9 10 9 10 | Pro CCT 8 8 8 8 7 8 | His CAT 9 9 9 10 8 9 | Arg CGT 4 5 4 4 5 5
CTC 6 4 5 4 5 4 | CCC 3 3 4 3 5 3 | CAC 4 4 4 3 5 4 | CGC 1 2 1 1 1 1
CTA 3 4 5 4 5 4 | CCA 4 7 4 5 6 7 | Gln CAA 7 6 6 6 6 6 | CGA 5 3 7 5 5 4
CTG 4 2 4 3 4 2 | CCG 2 0 2 1 0 0 | CAG 5 5 5 5 5 5 | CGG 3 3 2 3 3 3
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 8 8 9 7 6 8 | Thr ACT 9 11 12 12 11 10 | Asn AAT 18 18 20 19 19 18 | Ser AGT 6 6 6 4 6 7
ATC 4 4 2 5 3 4 | ACC 7 7 4 4 5 7 | AAC 7 6 5 6 6 6 | AGC 6 7 8 9 7 7
ATA 5 5 4 5 5 5 | ACA 8 8 8 9 9 8 | Lys AAA 13 14 13 14 12 14 | Arg AGA 8 9 8 8 7 9
Met ATG 13 11 11 11 11 11 | ACG 5 4 6 4 5 4 | AAG 17 14 17 15 17 14 | AGG 5 6 4 6 6 6
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 18 22 18 20 23 22 | Ala GCT 16 15 15 17 16 15 | Asp GAT 26 25 25 27 27 25 | Gly GGT 12 10 9 12 10 10
GTC 11 9 14 9 8 9 | GCC 7 9 8 9 8 9 | GAC 5 7 7 5 6 7 | GGC 8 9 9 7 9 9
GTA 8 5 5 9 5 5 | GCA 10 11 11 9 11 11 | Glu GAA 7 8 6 7 6 8 | GGA 10 10 9 10 8 10
GTG 11 10 10 10 11 10 | GCG 6 5 6 6 5 5 | GAG 11 9 11 10 11 9 | GGG 1 2 3 2 4 2
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 25 23 25 25 25 21 | Ser TCT 11 11 8 11 8 8 | Tyr TAT 23 25 24 23 24 22 | Cys TGT 14 15 16 14 16 15
TTC 7 9 7 7 7 11 | TCC 3 3 4 3 4 5 | TAC 8 6 7 8 7 9 | TGC 12 11 10 12 10 11
Leu TTA 14 15 10 14 10 13 | TCA 4 4 6 4 6 5 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 8 8 12 8 12 6 | TCG 2 2 2 2 2 2 | TAG 0 0 0 0 0 0 | Trp TGG 9 9 9 9 9 9
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 9 9 10 9 10 9 | Pro CCT 8 9 8 8 8 8 | His CAT 9 9 9 9 9 9 | Arg CGT 5 3 5 5 5 4
CTC 6 5 4 6 4 5 | CCC 4 3 3 4 3 4 | CAC 4 4 4 4 4 4 | CGC 0 3 1 0 1 1
CTA 2 3 4 2 4 5 | CCA 5 5 7 5 7 4 | Gln CAA 6 6 6 6 6 6 | CGA 6 5 4 6 4 7
CTG 4 3 2 4 2 4 | CCG 0 1 0 0 0 2 | CAG 5 5 5 5 5 5 | CGG 2 3 3 2 3 2
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 8 9 8 8 8 9 | Thr ACT 12 11 11 12 11 12 | Asn AAT 18 17 18 18 18 20 | Ser AGT 7 5 6 7 6 6
ATC 3 2 4 3 4 2 | ACC 6 5 7 6 7 4 | AAC 6 8 6 6 6 5 | AGC 7 8 7 7 7 8
ATA 4 4 5 4 5 4 | ACA 6 10 8 6 8 8 | Lys AAA 14 14 14 14 14 13 | Arg AGA 9 6 9 9 9 8
Met ATG 11 11 11 11 11 11 | ACG 6 4 4 6 4 6 | AAG 14 16 14 14 14 17 | AGG 6 6 6 6 6 4
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 20 21 22 20 22 18 | Ala GCT 11 16 15 11 15 15 | Asp GAT 26 26 25 26 25 25 | Gly GGT 11 9 10 11 10 9
GTC 11 11 9 11 9 14 | GCC 10 5 9 10 9 8 | GAC 7 6 7 7 7 7 | GGC 10 10 9 10 9 9
GTA 6 6 5 6 5 5 | GCA 13 13 11 13 11 11 | Glu GAA 5 8 8 5 8 6 | GGA 7 9 10 7 10 9
GTG 10 8 10 10 10 10 | GCG 6 5 5 6 5 6 | GAG 11 10 9 11 9 11 | GGG 3 3 2 3 2 3
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 21 24 20 25 21 25 | Ser TCT 8 7 8 8 8 8 | Tyr TAT 22 24 22 24 22 24 | Cys TGT 15 16 15 16 15 16
TTC 11 9 12 7 11 7 | TCC 5 4 4 4 5 4 | TAC 9 7 8 7 9 7 | TGC 11 10 12 10 11 10
Leu TTA 13 9 13 10 13 10 | TCA 5 7 5 6 5 6 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 6 9 6 12 6 12 | TCG 2 2 2 2 2 2 | TAG 0 0 0 0 0 0 | Trp TGG 9 9 9 9 9 9
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 9 9 10 10 9 10 | Pro CCT 8 7 7 8 8 8 | His CAT 9 8 9 9 9 9 | Arg CGT 4 5 4 5 4 5
CTC 5 5 5 4 5 4 | CCC 4 5 4 3 4 3 | CAC 4 5 3 4 4 4 | CGC 1 1 1 2 1 1
CTA 5 5 5 4 5 4 | CCA 4 6 5 7 4 7 | Gln CAA 6 6 6 6 6 6 | CGA 7 5 7 3 7 4
CTG 4 4 4 2 4 2 | CCG 2 0 2 0 2 0 | CAG 5 5 5 5 5 5 | CGG 2 3 2 3 2 3
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 9 6 9 8 9 8 | Thr ACT 12 11 12 11 12 11 | Asn AAT 20 19 21 18 20 18 | Ser AGT 6 6 6 6 6 6
ATC 2 3 2 4 2 4 | ACC 4 5 4 7 4 7 | AAC 5 6 5 6 5 6 | AGC 8 7 8 7 8 7
ATA 4 5 5 5 4 5 | ACA 8 9 8 8 8 8 | Lys AAA 13 12 13 14 13 14 | Arg AGA 8 7 8 9 8 9
Met ATG 11 11 11 11 11 11 | ACG 6 5 6 4 6 4 | AAG 17 17 17 14 17 14 | AGG 4 6 4 6 4 6
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 18 23 18 22 18 22 | Ala GCT 15 16 16 15 15 15 | Asp GAT 25 27 24 25 25 25 | Gly GGT 9 10 9 10 9 10
GTC 14 8 14 9 14 9 | GCC 8 8 9 9 8 9 | GAC 7 6 7 7 7 7 | GGC 9 9 9 9 9 9
GTA 5 5 5 5 5 5 | GCA 11 11 10 11 11 11 | Glu GAA 6 6 6 8 6 8 | GGA 9 8 9 10 9 10
GTG 10 11 10 10 10 10 | GCG 6 5 5 5 6 5 | GAG 11 11 11 9 11 9 | GGG 3 4 3 2 3 2
--------------------------------------------------------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C1
position 1: T:0.26782 C:0.14451 A:0.26204 G:0.32563
position 2: T:0.28324 C:0.21002 A:0.30636 G:0.20039
position 3: T:0.42967 C:0.18690 A:0.19268 G:0.19075
Average T:0.32691 C:0.18048 A:0.25369 G:0.23892
#2: C2
position 1: T:0.26975 C:0.14451 A:0.26590 G:0.31985
position 2: T:0.28516 C:0.20809 A:0.30058 G:0.20617
position 3: T:0.42389 C:0.19075 A:0.20424 G:0.18112
Average T:0.32627 C:0.18112 A:0.25690 G:0.23571
#3: C3
position 1: T:0.26397 C:0.15222 A:0.26397 G:0.31985
position 2: T:0.28324 C:0.20809 A:0.30636 G:0.20231
position 3: T:0.40655 C:0.20617 A:0.19846 G:0.18882
Average T:0.31792 C:0.18882 A:0.25626 G:0.23699
#4: C4
position 1: T:0.26397 C:0.15222 A:0.26397 G:0.31985
position 2: T:0.28324 C:0.20809 A:0.30636 G:0.20231
position 3: T:0.40655 C:0.20617 A:0.19846 G:0.18882
Average T:0.31792 C:0.18882 A:0.25626 G:0.23699
#5: C5
position 1: T:0.26782 C:0.14644 A:0.26590 G:0.31985
position 2: T:0.28709 C:0.20231 A:0.30829 G:0.20231
position 3: T:0.40655 C:0.19846 A:0.20809 G:0.18690
Average T:0.32049 C:0.18240 A:0.26076 G:0.23635
#6: C6
position 1: T:0.26975 C:0.14451 A:0.26397 G:0.32177
position 2: T:0.28516 C:0.20617 A:0.30058 G:0.20809
position 3: T:0.41811 C:0.20039 A:0.19461 G:0.18690
Average T:0.32434 C:0.18369 A:0.25305 G:0.23892
#7: C7
position 1: T:0.26590 C:0.14451 A:0.26782 G:0.32177
position 2: T:0.28902 C:0.20231 A:0.30829 G:0.20039
position 3: T:0.40655 C:0.19268 A:0.19846 G:0.20231
Average T:0.32049 C:0.17983 A:0.25819 G:0.24149
#8: C8
position 1: T:0.26975 C:0.14451 A:0.26590 G:0.31985
position 2: T:0.28516 C:0.20809 A:0.30058 G:0.20617
position 3: T:0.42389 C:0.19075 A:0.20424 G:0.18112
Average T:0.32627 C:0.18112 A:0.25690 G:0.23571
#9: C9
position 1: T:0.26397 C:0.15222 A:0.26397 G:0.31985
position 2: T:0.28324 C:0.20809 A:0.30636 G:0.20231
position 3: T:0.40462 C:0.20617 A:0.20039 G:0.18882
Average T:0.31728 C:0.18882 A:0.25690 G:0.23699
#10: C10
position 1: T:0.26397 C:0.14451 A:0.26590 G:0.32563
position 2: T:0.28709 C:0.20424 A:0.30443 G:0.20424
position 3: T:0.42389 C:0.18497 A:0.20424 G:0.18690
Average T:0.32498 C:0.17791 A:0.25819 G:0.23892
#11: C11
position 1: T:0.26397 C:0.15222 A:0.26012 G:0.32370
position 2: T:0.28131 C:0.20809 A:0.30636 G:0.20424
position 3: T:0.42004 C:0.18882 A:0.19461 G:0.19653
Average T:0.32177 C:0.18304 A:0.25369 G:0.24149
#12: C12
position 1: T:0.26975 C:0.14451 A:0.26590 G:0.31985
position 2: T:0.28516 C:0.20617 A:0.30058 G:0.20809
position 3: T:0.42389 C:0.18882 A:0.20617 G:0.18112
Average T:0.32627 C:0.17983 A:0.25755 G:0.23635
#13: C13
position 1: T:0.26975 C:0.14451 A:0.26397 G:0.32177
position 2: T:0.28516 C:0.20617 A:0.30058 G:0.20809
position 3: T:0.41811 C:0.20039 A:0.19461 G:0.18690
Average T:0.32434 C:0.18369 A:0.25305 G:0.23892
#14: C14
position 1: T:0.27168 C:0.14644 A:0.26204 G:0.31985
position 2: T:0.28324 C:0.20617 A:0.30829 G:0.20231
position 3: T:0.42004 C:0.19075 A:0.20809 G:0.18112
Average T:0.32498 C:0.18112 A:0.25947 G:0.23443
#15: C15
position 1: T:0.26975 C:0.14451 A:0.26590 G:0.31985
position 2: T:0.28516 C:0.20809 A:0.30058 G:0.20617
position 3: T:0.42389 C:0.18882 A:0.20617 G:0.18112
Average T:0.32627 C:0.18048 A:0.25755 G:0.23571
#16: C16
position 1: T:0.26975 C:0.14451 A:0.26397 G:0.32177
position 2: T:0.28516 C:0.20617 A:0.30058 G:0.20809
position 3: T:0.41811 C:0.20039 A:0.19461 G:0.18690
Average T:0.32434 C:0.18369 A:0.25305 G:0.23892
#17: C17
position 1: T:0.26975 C:0.14451 A:0.26590 G:0.31985
position 2: T:0.28516 C:0.20809 A:0.30058 G:0.20617
position 3: T:0.42389 C:0.18882 A:0.20617 G:0.18112
Average T:0.32627 C:0.18048 A:0.25755 G:0.23571
#18: C18
position 1: T:0.26397 C:0.15222 A:0.26397 G:0.31985
position 2: T:0.28324 C:0.20809 A:0.30636 G:0.20231
position 3: T:0.40462 C:0.20617 A:0.20039 G:0.18882
Average T:0.31728 C:0.18882 A:0.25690 G:0.23699
#19: C19
position 1: T:0.26397 C:0.15222 A:0.26397 G:0.31985
position 2: T:0.28324 C:0.20809 A:0.30636 G:0.20231
position 3: T:0.40462 C:0.20617 A:0.20039 G:0.18882
Average T:0.31728 C:0.18882 A:0.25690 G:0.23699
#20: C20
position 1: T:0.26397 C:0.15222 A:0.26012 G:0.32370
position 2: T:0.28131 C:0.20809 A:0.30636 G:0.20424
position 3: T:0.42004 C:0.18882 A:0.19461 G:0.19653
Average T:0.32177 C:0.18304 A:0.25369 G:0.24149
#21: C21
position 1: T:0.26204 C:0.15222 A:0.26782 G:0.31792
position 2: T:0.28709 C:0.20617 A:0.30250 G:0.20424
position 3: T:0.40462 C:0.20617 A:0.20231 G:0.18690
Average T:0.31792 C:0.18818 A:0.25755 G:0.23635
#22: C22
position 1: T:0.26975 C:0.14451 A:0.26590 G:0.31985
position 2: T:0.28516 C:0.20809 A:0.30058 G:0.20617
position 3: T:0.42389 C:0.19075 A:0.20424 G:0.18112
Average T:0.32627 C:0.18112 A:0.25690 G:0.23571
#23: C23
position 1: T:0.26397 C:0.15222 A:0.26397 G:0.31985
position 2: T:0.28324 C:0.20809 A:0.30636 G:0.20231
position 3: T:0.40462 C:0.20617 A:0.20039 G:0.18882
Average T:0.31728 C:0.18882 A:0.25690 G:0.23699
#24: C24
position 1: T:0.26975 C:0.14451 A:0.26590 G:0.31985
position 2: T:0.28516 C:0.20809 A:0.30058 G:0.20617
position 3: T:0.42389 C:0.18882 A:0.20617 G:0.18112
Average T:0.32627 C:0.18048 A:0.25755 G:0.23571
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 565 | Ser S TCT 208 | Tyr Y TAT 554 | Cys C TGT 365
TTC 205 | TCC 94 | TAC 189 | TGC 260
Leu L TTA 282 | TCA 126 | *** * TAA 0 | *** * TGA 0
TTG 212 | TCG 50 | TAG 0 | Trp W TGG 216
------------------------------------------------------------------------------
Leu L CTT 222 | Pro P CCT 191 | His H CAT 215 | Arg R CGT 107
CTC 117 | CCC 86 | CAC 96 | CGC 26
CTA 95 | CCA 130 | Gln Q CAA 143 | CGA 130
CTG 81 | CCG 20 | CAG 120 | CGG 59
------------------------------------------------------------------------------
Ile I ATT 196 | Thr T ACT 270 | Asn N AAT 450 | Ser S AGT 145
ATC 73 | ACC 132 | AAC 141 | AGC 177
ATA 110 | ACA 191 | Lys K AAA 325 | Arg R AGA 196
Met M ATG 266 | ACG 122 | AAG 373 | AGG 128
------------------------------------------------------------------------------
Val V GTT 484 | Ala A GCT 357 | Asp D GAT 612 | Gly G GGT 241
GTC 264 | GCC 204 | GAC 160 | GGC 217
GTA 133 | GCA 267 | Glu E GAA 160 | GGA 215
GTG 240 | GCG 131 | GAG 248 | GGG 64
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.26702 C:0.14756 A:0.26453 G:0.32089
position 2: T:0.28460 C:0.20705 A:0.30395 G:0.20440
position 3: T:0.41602 C:0.19597 A:0.20095 G:0.18706
Average T:0.32255 C:0.18353 A:0.25648 G:0.23745
Model 1: NearlyNeutral (2 categories)
TREE # 1: (1, 14, (((((10, 7), 5), (13, 16, 6)), (18, 19, (21, 3, 4), 23, 9)), ((11, 20), (12, 15, 17, (2, 22, 8), 24)))); MP score: 336
check convergence..
lnL(ntime: 36 np: 39): -3930.529178 +0.000000
25..1 25..14 25..26 26..27 27..28 28..29 29..30 30..10 30..7 29..5 28..31 31..13 31..16 31..6 27..32 32..18 32..19 32..33 33..21 33..3 33..4 32..23 32..9 26..34 34..35 35..11 35..20 34..36 36..12 36..15 36..17 36..37 37..2 37..22 37..8 36..24
0.070832 0.058805 0.052935 0.036711 0.016056 0.046892 0.028968 0.103716 0.057302 0.033224 0.072619 0.000004 0.000004 0.000004 0.044500 0.000004 0.000004 0.002020 0.031111 0.000004 0.000004 0.000004 0.000004 0.020669 0.048194 0.000004 0.000004 0.060734 0.002048 0.000004 0.000004 0.002048 0.000004 0.000004 0.000004 0.000004 2.806098 0.956078 0.027769
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.789452
(1: 0.070832, 14: 0.058805, (((((10: 0.103716, 7: 0.057302): 0.028968, 5: 0.033224): 0.046892, (13: 0.000004, 16: 0.000004, 6: 0.000004): 0.072619): 0.016056, (18: 0.000004, 19: 0.000004, (21: 0.031111, 3: 0.000004, 4: 0.000004): 0.002020, 23: 0.000004, 9: 0.000004): 0.044500): 0.036711, ((11: 0.000004, 20: 0.000004): 0.048194, (12: 0.002048, 15: 0.000004, 17: 0.000004, (2: 0.000004, 22: 0.000004, 8: 0.000004): 0.002048, 24: 0.000004): 0.060734): 0.020669): 0.052935);
(C1: 0.070832, C14: 0.058805, (((((C10: 0.103716, C7: 0.057302): 0.028968, C5: 0.033224): 0.046892, (C13: 0.000004, C16: 0.000004, C6: 0.000004): 0.072619): 0.016056, (C18: 0.000004, C19: 0.000004, (C21: 0.031111, C3: 0.000004, C4: 0.000004): 0.002020, C23: 0.000004, C9: 0.000004): 0.044500): 0.036711, ((C11: 0.000004, C20: 0.000004): 0.048194, (C12: 0.002048, C15: 0.000004, C17: 0.000004, (C2: 0.000004, C22: 0.000004, C8: 0.000004): 0.002048, C24: 0.000004): 0.060734): 0.020669): 0.052935);
Detailed output identifying parameters
kappa (ts/tv) = 2.80610
MLEs of dN/dS (w) for site classes (K=2)
p: 0.95608 0.04392
w: 0.02777 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
25..1 0.071 1180.7 376.3 0.0705 0.0056 0.0800 6.7 30.1
25..14 0.059 1180.7 376.3 0.0705 0.0047 0.0664 5.5 25.0
25..26 0.053 1180.7 376.3 0.0705 0.0042 0.0598 5.0 22.5
26..27 0.037 1180.7 376.3 0.0705 0.0029 0.0415 3.5 15.6
27..28 0.016 1180.7 376.3 0.0705 0.0013 0.0181 1.5 6.8
28..29 0.047 1180.7 376.3 0.0705 0.0037 0.0530 4.4 19.9
29..30 0.029 1180.7 376.3 0.0705 0.0023 0.0327 2.7 12.3
30..10 0.104 1180.7 376.3 0.0705 0.0083 0.1172 9.7 44.1
30..7 0.057 1180.7 376.3 0.0705 0.0046 0.0647 5.4 24.4
29..5 0.033 1180.7 376.3 0.0705 0.0026 0.0375 3.1 14.1
28..31 0.073 1180.7 376.3 0.0705 0.0058 0.0820 6.8 30.9
31..13 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
31..16 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
31..6 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
27..32 0.044 1180.7 376.3 0.0705 0.0035 0.0503 4.2 18.9
32..18 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
32..19 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
32..33 0.002 1180.7 376.3 0.0705 0.0002 0.0023 0.2 0.9
33..21 0.031 1180.7 376.3 0.0705 0.0025 0.0351 2.9 13.2
33..3 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
33..4 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
32..23 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
32..9 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
26..34 0.021 1180.7 376.3 0.0705 0.0016 0.0233 1.9 8.8
34..35 0.048 1180.7 376.3 0.0705 0.0038 0.0544 4.5 20.5
35..11 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
35..20 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
34..36 0.061 1180.7 376.3 0.0705 0.0048 0.0686 5.7 25.8
36..12 0.002 1180.7 376.3 0.0705 0.0002 0.0023 0.2 0.9
36..15 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
36..17 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
36..37 0.002 1180.7 376.3 0.0705 0.0002 0.0023 0.2 0.9
37..2 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
37..22 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
37..8 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
36..24 0.000 1180.7 376.3 0.0705 0.0000 0.0000 0.0 0.0
Time used: 2:10
Model 2: PositiveSelection (3 categories)
TREE # 1: (1, 14, (((((10, 7), 5), (13, 16, 6)), (18, 19, (21, 3, 4), 23, 9)), ((11, 20), (12, 15, 17, (2, 22, 8), 24)))); MP score: 336
check convergence..
lnL(ntime: 36 np: 41): -3930.520906 +0.000000
25..1 25..14 25..26 26..27 27..28 28..29 29..30 30..10 30..7 29..5 28..31 31..13 31..16 31..6 27..32 32..18 32..19 32..33 33..21 33..3 33..4 32..23 32..9 26..34 34..35 35..11 35..20 34..36 36..12 36..15 36..17 36..37 37..2 37..22 37..8 36..24
0.070849 0.058821 0.052984 0.036736 0.016026 0.046915 0.028984 0.103747 0.057341 0.033251 0.072682 0.000004 0.000004 0.000004 0.044544 0.000004 0.000004 0.002021 0.031132 0.000004 0.000004 0.000004 0.000004 0.020664 0.048212 0.000004 0.000004 0.060763 0.002048 0.000004 0.000004 0.002048 0.000004 0.000004 0.000004 0.000004 2.810406 0.958046 0.017724 0.028402 1.085688
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.789837
(1: 0.070849, 14: 0.058821, (((((10: 0.103747, 7: 0.057341): 0.028984, 5: 0.033251): 0.046915, (13: 0.000004, 16: 0.000004, 6: 0.000004): 0.072682): 0.016026, (18: 0.000004, 19: 0.000004, (21: 0.031132, 3: 0.000004, 4: 0.000004): 0.002021, 23: 0.000004, 9: 0.000004): 0.044544): 0.036736, ((11: 0.000004, 20: 0.000004): 0.048212, (12: 0.002048, 15: 0.000004, 17: 0.000004, (2: 0.000004, 22: 0.000004, 8: 0.000004): 0.002048, 24: 0.000004): 0.060763): 0.020664): 0.052984);
(C1: 0.070849, C14: 0.058821, (((((C10: 0.103747, C7: 0.057341): 0.028984, C5: 0.033251): 0.046915, (C13: 0.000004, C16: 0.000004, C6: 0.000004): 0.072682): 0.016026, (C18: 0.000004, C19: 0.000004, (C21: 0.031132, C3: 0.000004, C4: 0.000004): 0.002021, C23: 0.000004, C9: 0.000004): 0.044544): 0.036736, ((C11: 0.000004, C20: 0.000004): 0.048212, (C12: 0.002048, C15: 0.000004, C17: 0.000004, (C2: 0.000004, C22: 0.000004, C8: 0.000004): 0.002048, C24: 0.000004): 0.060763): 0.020664): 0.052984);
Detailed output identifying parameters
kappa (ts/tv) = 2.81041
MLEs of dN/dS (w) for site classes (K=3)
p: 0.95805 0.01772 0.02423
w: 0.02840 1.00000 1.08569
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
25..1 0.071 1180.7 376.3 0.0712 0.0057 0.0799 6.7 30.1
25..14 0.059 1180.7 376.3 0.0712 0.0047 0.0663 5.6 25.0
25..26 0.053 1180.7 376.3 0.0712 0.0043 0.0597 5.0 22.5
26..27 0.037 1180.7 376.3 0.0712 0.0029 0.0414 3.5 15.6
27..28 0.016 1180.7 376.3 0.0712 0.0013 0.0181 1.5 6.8
28..29 0.047 1180.7 376.3 0.0712 0.0038 0.0529 4.4 19.9
29..30 0.029 1180.7 376.3 0.0712 0.0023 0.0327 2.7 12.3
30..10 0.104 1180.7 376.3 0.0712 0.0083 0.1169 9.8 44.0
30..7 0.057 1180.7 376.3 0.0712 0.0046 0.0646 5.4 24.3
29..5 0.033 1180.7 376.3 0.0712 0.0027 0.0375 3.2 14.1
28..31 0.073 1180.7 376.3 0.0712 0.0058 0.0819 6.9 30.8
31..13 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
31..16 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
31..6 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
27..32 0.045 1180.7 376.3 0.0712 0.0036 0.0502 4.2 18.9
32..18 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
32..19 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
32..33 0.002 1180.7 376.3 0.0712 0.0002 0.0023 0.2 0.9
33..21 0.031 1180.7 376.3 0.0712 0.0025 0.0351 3.0 13.2
33..3 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
33..4 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
32..23 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
32..9 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
26..34 0.021 1180.7 376.3 0.0712 0.0017 0.0233 2.0 8.8
34..35 0.048 1180.7 376.3 0.0712 0.0039 0.0543 4.6 20.5
35..11 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
35..20 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
34..36 0.061 1180.7 376.3 0.0712 0.0049 0.0685 5.8 25.8
36..12 0.002 1180.7 376.3 0.0712 0.0002 0.0023 0.2 0.9
36..15 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
36..17 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
36..37 0.002 1180.7 376.3 0.0712 0.0002 0.0023 0.2 0.9
37..2 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
37..22 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
37..8 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
36..24 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
11 K 0.546 0.978
14 I 0.634 1.054
16 Y 0.526 0.955
19 A 0.547 0.980
94 T 0.603 1.039
134 A 0.615 1.052
147 V 0.528 0.955
203 V 0.527 0.954
256 P 0.585 1.028
368 L 0.574 1.009
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
14 I 0.761 1.476 +- 0.432
94 T 0.646 1.380 +- 0.454
134 A 0.677 1.417 +- 0.429
256 P 0.553 1.291 +- 0.449
368 L 0.552 1.274 +- 0.504
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.906 0.083 0.008 0.001 0.000 0.000 0.000 0.000 0.000 0.000
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000
sum of density on p0-p1 = 1.000000
Time used: 6:44
Model 7: beta (10 categories)
TREE # 1: (1, 14, (((((10, 7), 5), (13, 16, 6)), (18, 19, (21, 3, 4), 23, 9)), ((11, 20), (12, 15, 17, (2, 22, 8), 24)))); MP score: 336
lnL(ntime: 36 np: 39): -3932.113518 +0.000000
25..1 25..14 25..26 26..27 27..28 28..29 29..30 30..10 30..7 29..5 28..31 31..13 31..16 31..6 27..32 32..18 32..19 32..33 33..21 33..3 33..4 32..23 32..9 26..34 34..35 35..11 35..20 34..36 36..12 36..15 36..17 36..37 37..2 37..22 37..8 36..24
0.070759 0.058766 0.052577 0.036519 0.016451 0.046741 0.028924 0.103580 0.056965 0.033027 0.072062 0.000004 0.000004 0.000004 0.044149 0.000004 0.000004 0.002016 0.030983 0.000004 0.000004 0.000004 0.000004 0.020831 0.048083 0.000004 0.000004 0.060620 0.002048 0.000004 0.000004 0.002047 0.000004 0.000004 0.000004 0.000004 2.798021 0.073368 0.923765
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.787215
(1: 0.070759, 14: 0.058766, (((((10: 0.103580, 7: 0.056965): 0.028924, 5: 0.033027): 0.046741, (13: 0.000004, 16: 0.000004, 6: 0.000004): 0.072062): 0.016451, (18: 0.000004, 19: 0.000004, (21: 0.030983, 3: 0.000004, 4: 0.000004): 0.002016, 23: 0.000004, 9: 0.000004): 0.044149): 0.036519, ((11: 0.000004, 20: 0.000004): 0.048083, (12: 0.002048, 15: 0.000004, 17: 0.000004, (2: 0.000004, 22: 0.000004, 8: 0.000004): 0.002047, 24: 0.000004): 0.060620): 0.020831): 0.052577);
(C1: 0.070759, C14: 0.058766, (((((C10: 0.103580, C7: 0.056965): 0.028924, C5: 0.033027): 0.046741, (C13: 0.000004, C16: 0.000004, C6: 0.000004): 0.072062): 0.016451, (C18: 0.000004, C19: 0.000004, (C21: 0.030983, C3: 0.000004, C4: 0.000004): 0.002016, C23: 0.000004, C9: 0.000004): 0.044149): 0.036519, ((C11: 0.000004, C20: 0.000004): 0.048083, (C12: 0.002048, C15: 0.000004, C17: 0.000004, (C2: 0.000004, C22: 0.000004, C8: 0.000004): 0.002047, C24: 0.000004): 0.060620): 0.020831): 0.052577);
Detailed output identifying parameters
kappa (ts/tv) = 2.79802
Parameters in M7 (beta):
p = 0.07337 q = 0.92376
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00000 0.00000 0.00000 0.00000 0.00002 0.00033 0.00320 0.02244 0.12267 0.53834
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
25..1 0.071 1180.9 376.1 0.0687 0.0055 0.0803 6.5 30.2
25..14 0.059 1180.9 376.1 0.0687 0.0046 0.0667 5.4 25.1
25..26 0.053 1180.9 376.1 0.0687 0.0041 0.0597 4.8 22.4
26..27 0.037 1180.9 376.1 0.0687 0.0028 0.0415 3.4 15.6
27..28 0.016 1180.9 376.1 0.0687 0.0013 0.0187 1.5 7.0
28..29 0.047 1180.9 376.1 0.0687 0.0036 0.0531 4.3 20.0
29..30 0.029 1180.9 376.1 0.0687 0.0023 0.0328 2.7 12.3
30..10 0.104 1180.9 376.1 0.0687 0.0081 0.1176 9.5 44.2
30..7 0.057 1180.9 376.1 0.0687 0.0044 0.0647 5.2 24.3
29..5 0.033 1180.9 376.1 0.0687 0.0026 0.0375 3.0 14.1
28..31 0.072 1180.9 376.1 0.0687 0.0056 0.0818 6.6 30.8
31..13 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
31..16 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
31..6 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
27..32 0.044 1180.9 376.1 0.0687 0.0034 0.0501 4.1 18.8
32..18 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
32..19 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
32..33 0.002 1180.9 376.1 0.0687 0.0002 0.0023 0.2 0.9
33..21 0.031 1180.9 376.1 0.0687 0.0024 0.0352 2.9 13.2
33..3 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
33..4 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
32..23 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
32..9 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
26..34 0.021 1180.9 376.1 0.0687 0.0016 0.0236 1.9 8.9
34..35 0.048 1180.9 376.1 0.0687 0.0037 0.0546 4.4 20.5
35..11 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
35..20 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
34..36 0.061 1180.9 376.1 0.0687 0.0047 0.0688 5.6 25.9
36..12 0.002 1180.9 376.1 0.0687 0.0002 0.0023 0.2 0.9
36..15 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
36..17 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
36..37 0.002 1180.9 376.1 0.0687 0.0002 0.0023 0.2 0.9
37..2 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
37..22 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
37..8 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
36..24 0.000 1180.9 376.1 0.0687 0.0000 0.0000 0.0 0.0
Time used: 20:38
Model 8: beta&w>1 (11 categories)
TREE # 1: (1, 14, (((((10, 7), 5), (13, 16, 6)), (18, 19, (21, 3, 4), 23, 9)), ((11, 20), (12, 15, 17, (2, 22, 8), 24)))); MP score: 336
check convergence..
lnL(ntime: 36 np: 41): -3930.490128 +0.000000
25..1 25..14 25..26 26..27 27..28 28..29 29..30 30..10 30..7 29..5 28..31 31..13 31..16 31..6 27..32 32..18 32..19 32..33 33..21 33..3 33..4 32..23 32..9 26..34 34..35 35..11 35..20 34..36 36..12 36..15 36..17 36..37 37..2 37..22 37..8 36..24
0.070876 0.058838 0.053035 0.036765 0.015865 0.046937 0.028970 0.103634 0.057331 0.033319 0.072785 0.000004 0.000004 0.000004 0.044624 0.000004 0.000004 0.002022 0.031118 0.000004 0.000004 0.000004 0.000004 0.020735 0.048149 0.000004 0.000004 0.060848 0.002048 0.000004 0.000004 0.002048 0.000004 0.000004 0.000004 0.000004 2.808527 0.975107 0.245945 5.559750 1.334773
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.790016
(1: 0.070876, 14: 0.058838, (((((10: 0.103634, 7: 0.057331): 0.028970, 5: 0.033319): 0.046937, (13: 0.000004, 16: 0.000004, 6: 0.000004): 0.072785): 0.015865, (18: 0.000004, 19: 0.000004, (21: 0.031118, 3: 0.000004, 4: 0.000004): 0.002022, 23: 0.000004, 9: 0.000004): 0.044624): 0.036765, ((11: 0.000004, 20: 0.000004): 0.048149, (12: 0.002048, 15: 0.000004, 17: 0.000004, (2: 0.000004, 22: 0.000004, 8: 0.000004): 0.002048, 24: 0.000004): 0.060848): 0.020735): 0.053035);
(C1: 0.070876, C14: 0.058838, (((((C10: 0.103634, C7: 0.057331): 0.028970, C5: 0.033319): 0.046937, (C13: 0.000004, C16: 0.000004, C6: 0.000004): 0.072785): 0.015865, (C18: 0.000004, C19: 0.000004, (C21: 0.031118, C3: 0.000004, C4: 0.000004): 0.002022, C23: 0.000004, C9: 0.000004): 0.044624): 0.036765, ((C11: 0.000004, C20: 0.000004): 0.048149, (C12: 0.002048, C15: 0.000004, C17: 0.000004, (C2: 0.000004, C22: 0.000004, C8: 0.000004): 0.002048, C24: 0.000004): 0.060848): 0.020735): 0.053035);
Detailed output identifying parameters
kappa (ts/tv) = 2.80853
Parameters in M8 (beta&w>1):
p0 = 0.97511 p = 0.24594 q = 5.55975
(p1 = 0.02489) w = 1.33477
MLEs of dN/dS (w) for site classes (K=11)
p: 0.09751 0.09751 0.09751 0.09751 0.09751 0.09751 0.09751 0.09751 0.09751 0.09751 0.02489
w: 0.00000 0.00006 0.00046 0.00183 0.00514 0.01191 0.02459 0.04774 0.09234 0.20560 1.33477
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
25..1 0.071 1180.7 376.3 0.0712 0.0057 0.0799 6.7 30.1
25..14 0.059 1180.7 376.3 0.0712 0.0047 0.0663 5.6 25.0
25..26 0.053 1180.7 376.3 0.0712 0.0043 0.0598 5.0 22.5
26..27 0.037 1180.7 376.3 0.0712 0.0030 0.0414 3.5 15.6
27..28 0.016 1180.7 376.3 0.0712 0.0013 0.0179 1.5 6.7
28..29 0.047 1180.7 376.3 0.0712 0.0038 0.0529 4.4 19.9
29..30 0.029 1180.7 376.3 0.0712 0.0023 0.0327 2.7 12.3
30..10 0.104 1180.7 376.3 0.0712 0.0083 0.1168 9.8 44.0
30..7 0.057 1180.7 376.3 0.0712 0.0046 0.0646 5.4 24.3
29..5 0.033 1180.7 376.3 0.0712 0.0027 0.0376 3.2 14.1
28..31 0.073 1180.7 376.3 0.0712 0.0058 0.0820 6.9 30.9
31..13 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
31..16 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
31..6 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
27..32 0.045 1180.7 376.3 0.0712 0.0036 0.0503 4.2 18.9
32..18 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
32..19 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
32..33 0.002 1180.7 376.3 0.0712 0.0002 0.0023 0.2 0.9
33..21 0.031 1180.7 376.3 0.0712 0.0025 0.0351 2.9 13.2
33..3 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
33..4 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
32..23 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
32..9 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
26..34 0.021 1180.7 376.3 0.0712 0.0017 0.0234 2.0 8.8
34..35 0.048 1180.7 376.3 0.0712 0.0039 0.0543 4.6 20.4
35..11 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
35..20 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
34..36 0.061 1180.7 376.3 0.0712 0.0049 0.0686 5.8 25.8
36..12 0.002 1180.7 376.3 0.0712 0.0002 0.0023 0.2 0.9
36..15 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
36..17 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
36..37 0.002 1180.7 376.3 0.0712 0.0002 0.0023 0.2 0.9
37..2 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
37..22 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
37..8 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
36..24 0.000 1180.7 376.3 0.0712 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
11 K 0.605 0.876
14 I 0.992** 1.326
16 Y 0.517 0.774
19 A 0.610 0.882
94 T 0.892 1.210
134 A 0.953* 1.281
147 V 0.527 0.785
203 V 0.523 0.780
256 P 0.806 1.111
368 L 0.745 1.039
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
11 K 0.540 1.009 +- 0.609
14 I 0.946 1.496 +- 0.294
19 A 0.543 1.013 +- 0.607
94 T 0.826 1.364 +- 0.453
134 A 0.876 1.425 +- 0.385
256 P 0.718 1.238 +- 0.528
368 L 0.686 1.194 +- 0.564
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000
p : 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.019 0.156 0.824
ws: 0.960 0.038 0.002 0.000 0.000 0.000 0.000 0.000 0.000 0.000
Time used: 40:28
Model 1: NearlyNeutral -3930.529178 Model 2: PositiveSelection -3930.520906 Model 7: beta -3932.113518 Model 8: beta&w>1 -3930.490128 Model 2 vs 1 .016544 Model 8 vs 7 3.246780
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
