--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -5389.41 -5422.61
2 -5392.23 -5425.07
--------------------------------------
TOTAL -5390.04 -5424.46
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.608359 0.002116 0.527358 0.704177 0.606125 1455.61 1478.30 1.000
r(A<->C){all} 0.059124 0.000186 0.034455 0.087697 0.058256 1023.07 1027.70 1.001
r(A<->G){all} 0.318973 0.000890 0.259806 0.375560 0.318133 652.83 692.20 1.000
r(A<->T){all} 0.075510 0.000151 0.051883 0.098534 0.075075 674.36 753.55 1.000
r(C<->G){all} 0.040584 0.000119 0.019060 0.061073 0.040089 948.73 1019.34 1.000
r(C<->T){all} 0.440024 0.000984 0.378942 0.501607 0.439446 621.18 671.35 1.000
r(G<->T){all} 0.065785 0.000104 0.046656 0.086111 0.065325 914.21 960.73 1.000
pi(A){all} 0.214903 0.000089 0.197058 0.233683 0.214472 982.12 1145.69 1.000
pi(C){all} 0.183806 0.000073 0.167651 0.200868 0.183721 1006.43 1028.57 1.000
pi(G){all} 0.270866 0.000096 0.251063 0.289258 0.270781 1131.00 1157.32 1.000
pi(T){all} 0.330426 0.000113 0.309922 0.352214 0.330287 857.98 926.02 1.000
alpha{1,2} 0.237765 0.001249 0.174566 0.307454 0.233910 1247.12 1289.95 1.000
alpha{3} 4.200756 2.257939 1.748914 7.232354 3.956183 1226.19 1303.40 1.000
pinvar{all} 0.501373 0.001323 0.431246 0.570610 0.504104 998.86 1115.36 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -5223.095397
Model 2: PositiveSelection -5223.095397
Model 7: beta -5224.092517
Model 8: beta&w>1 -5222.987307
Model 2 vs 1 0
Model 8 vs 7 2.210420
-- Starting log on Wed Nov 02 20:11:21 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.11 sec, SCORE=1000, Nseq=29, Len=585
C1 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDNEVVV
C2 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRESLDNEVVV
C3 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C4 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C5 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C6 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDKEVVV
C7 VNPILFVDQYGCDYTGCLAKGLEDYGECTLDEMKELFPVWRDSLGSDVIV
C8 VKSILFLDQYGCDYTGRLAKGLEDYGDCTLEEMKELFPVWCDSLDNEVVV
C9 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C10 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C11 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C12 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C13 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C14 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C15 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDNEVVV
C16 VKPVLFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWCDSLDKEVVV
C17 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C18 VKSILFLDQYGCDYTGRLAKGLEDYGDCTLEEMKELFPVWCDSLDNEVVV
C19 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRESLDNEVVV
C20 VKSILFLDQYGCDYTGRLAKGLEDYGDCTLEEMKELFPVWCDSLDNEVVV
C21 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C22 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C23 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDNEVVV
C24 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C25 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C26 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C27 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C28 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C29 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
*:.:**:********* *********: **.***** *** :**..:*:*
C1 AWHVDRDPRAVMRLQTLATLRSIDYVGQPTEDVVDGDVVVREPAHLLAAD
C2 AWHVDRDPRAVMRLQTLATLRSIDYVGQPTEDVVDGDVVVRAPAHLLAAD
C3 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C4 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C5 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C6 AWHVDRDPRAVMRLQTLATIRSIDYVGQPTEDVVDGDVVVREPAHLLAAN
C7 AWQVVRDPRAVMRMQTLATIRSIEYVGQPVEDLVDGDVVMREPAHLLSAN
C8 AWHVDRDPRAVMRLQTLATIRSIGYVGQPTEDLVDGDVVVREPAHLLAAN
C9 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C10 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C11 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C12 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C13 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C14 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C15 AWHVDRDPRAVMRLQTLATVRSIDYVGQPTEDVVDGDVVVREPAHLLAAN
C16 AWHVDRDPRAVMRLQTLATVRSIDYVGQPTEDVVDGDVVVREPAHLLAAN
C17 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C18 AWHVDRDPRAVMRLQTLATIRSIGYVGQPTEDLVDGDVVVREPAHLLAAN
C19 AWHVDRDPRAVMRLQTLATLRSIDYVGQPTEDVVDGDVVVREPAHLLAAD
C20 AWHVDRDPRAVMRLQTLATVRCIGYVGQPTEDLVDGDVVVREPAHLLAAN
C21 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C22 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C23 AWHVDRDPRAVMRLQTLATVRSIDYVGQPTEDVVDGDVVVREPAHLLAAN
C24 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C25 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C26 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C27 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C28 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C29 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
**:* *****.**:*****:*.* ***** **:******:* *****:.:
C1 AVVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCDF
C2 ALVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCDF
C3 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C4 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C5 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C6 AIVKRLPRLVETMLYADSSVTEFCYKTKLGDCGFITQFGYVDCCGDACDF
C7 AVVKRLPRLVEAMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCDF
C8 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDACDF
C9 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C10 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C11 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C12 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C13 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C14 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C15 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C16 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCNCGFITQFGYVDCCGDTCDF
C17 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C18 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDACDF
C19 ALVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCDF
C20 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDACDF
C21 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C22 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C23 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C24 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C25 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C26 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C27 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C28 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C29 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
*:*********:***:************* :***************:*.*
C1 RGWVPGNMLDGFPCPGCSKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C2 RGWVPGNMLDGFPCPGCSKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C3 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C4 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C5 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C6 RGWVPGNMMDGFPCPGCSRSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C7 RGWVPGNMMDGFPCPGCSKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C8 RGWVPGNMMDGFLCPGCSKSYMPWELEAQSSGVIPKGGVLFTQSTDTVNR
C9 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C10 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C11 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C12 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C13 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C14 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C15 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C16 RGWVPGNMMDGFPCPGCSKNYMPWELEAQSSGVIPEGAVLFTVSNDTVNR
C17 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C18 RGWVPGNMMDGFLCPGCSKSYMPWELEAQSSGVIPKGGVLFTQSTDTVNR
C19 RGWVPGNMLDGFPCPGCSKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C20 RGWVPGNMMDGFLCPGCSKSYMPWELEAQSSGVIPKGGVLFTQSTDTVNR
C21 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C22 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C23 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C24 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C25 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C26 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C27 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C28 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C29 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
****.***:*** **** :.***************:*.**** *.*****
C1 EAFKLYGHAVVPFGSAVYWSPYPGMWLPVVWSSVKSYSGLTYTGVVGCKA
C2 EAFKLYGHAVVPFGSAVYWSPYPGMWLPVVWSSVKSYSGLTYTGVVGCKA
C3 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C4 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C5 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C6 ESFKLYGHAVAPFGSAVYWSPYPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C7 ESFKLYGHAVVPFGSAAYWSPYPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C8 ESFKLYGHAVVPFGSAVYWSPYPGMWLPVIWSSVKSYADLTYTGVVGCKA
C9 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C10 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C11 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C12 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C13 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C14 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C15 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C16 ESFKIYGHAVVPFGGCVYWSPYPGMWLPVIWSSVKSYSGLTYTGAVGCKA
C17 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C18 ESFKLYGHAVVPFGSAVYWSPYPGMWLPVIWSSVKSYADLTYTGVVGCKA
C19 EAFKLYGHAVVPFGSAVYWSPYPGMWLPVVWSSVKSYSGLTYTGVVGCKA
C20 ESFKLYGHAVVPFGSAVYWSPYPGMWLPVIWSSVKSYADLTYTGVVGCKA
C21 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C22 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C23 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C24 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C25 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C26 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C27 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C28 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C29 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
*:**:*****.***...**** *******:*******: *****.*****
C1 IVQETDAICRSLYMDYVQHKCGNLDQRATLGLDDVYHRQLLVNRGDYSLL
C2 IVQETDAICRSLYMDYVQHKCGNLDQRATLGLDDVYHRQLLVNRGDYSLL
C3 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C4 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C5 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C6 IVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C7 IVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C8 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C9 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C10 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C11 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C12 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C13 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C14 IVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLL
C15 IVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C16 IVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C17 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C18 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C19 IVQETDAICRSLYMDYVQHKCGNLDQRATLGLDDVYHRQLLVNRGDYSLL
C20 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C21 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C22 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C23 IVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C24 IVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLL
C25 IVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLL
C26 IVQETDAICRFLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C27 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C28 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C29 IVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLL
*****:**** *************:*** **:******************
C1 LENVDLFVKRRAEFACKFATCGDGFVPLLLDGLVPRSYYLIKSGQAYTSM
C2 LENVDLFVKRRAEFACKFATCGDGFVPLLLDGLVPRSYYLIKSGQAYTSM
C3 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
C4 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C5 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
C6 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C7 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C8 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C9 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C10 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C11 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C12 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C13 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C14 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
C15 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSV
C16 LENLDLFIKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSV
C17 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C18 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C19 LENVDLFVKRRAEFACKFATCGDGFVPLLLDGLVPRSYYLIKSGQAYTSM
C20 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C21 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C22 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C23 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSV
C24 LENVDLFVKRRAEFACKFATCGDGLAPLLLDGLVPRSYYLIKSGQAFTSL
C25 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
C26 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
C27 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C28 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C29 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
***:***:****************:.********************:**:
C1 MVNFSHEVIDMCMDMALLFMHDVKVATKYVKKFTGKLAVRFKALGVAVVR
C2 MVNFSHEVIDMCMDMALLFMHDVKVATKYVKKFTGKLAVRFKALGVAVVR
C3 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C4 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C5 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C6 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C7 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C8 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C9 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C10 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C11 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C12 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C13 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C14 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C15 MVNFSREVIDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C16 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C17 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKAWGVAVVR
C18 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C19 MVNFSHEVIDMCMDMALLFMHDVKVATKYVKKFTGKLAVRFKALGVAVVR
C20 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C21 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C22 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C23 MVNFSREVIDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C24 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C25 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C26 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKVAVRFKALGIAVVR
C27 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C28 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C29 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
*****:** ***********************.***:****** *:****
C1 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEAPELVKNFV
C2 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEAPELVKNFV
C3 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C4 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C5 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C6 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C7 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C8 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFLSDVPELVKNFV
C9 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C10 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C11 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C12 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C13 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C14 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C15 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C16 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFVQDVPELVKNFV
C17 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C18 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFLSDVPELVKNFV
C19 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEAPELVKNFV
C20 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFLSDVPELVKNFV
C21 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C22 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C23 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C24 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C25 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C26 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFIQEVPELVKNFV
C27 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C28 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C29 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
*********** ********************** ***:.:.********
C1 AKFRAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKFYEVVQKSLSAY
C2 AKFRAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C3 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C4 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C5 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C6 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C7 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C8 DKFKVFFKVLIDSMSVSVLSGLTVVKTASNRVCLAGCKVYEVVQKRLSAY
C9 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C10 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C11 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C12 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C13 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C14 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C15 DKFKAFFKVLIDSMSVTILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C16 DKFKAFFKVLIDSMSVSILSGLTVVKAASNRVCLAGSKVYAVVQKSLSAY
C17 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C18 DKFKVFFKVLIDSMSVSVLSGLTVVKTASNRVCLAGCKVYEVVQKRLSAY
C19 AKFRAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C20 DKFKVFFKVLIDSMSVSVLSGLTVVKTASNRVCLAGCKVYEVVQKRLSAY
C21 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C22 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C23 DKFKAFFKVLIDSMSVTILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C24 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C25 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C26 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C27 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C28 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C29 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
**:.***********::********:*********.*.* **** *.**
C1 VLPVGCSEATCLVGESEPAVFEDDVVGVVKTPLTYQGCCKPPTSFEKICI
C2 VLPVGCSEATCLVGESEPAVFEDDVVGVVKTPLTYQGCCKPPTSFEKICI
C3 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C4 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C5 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C6 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKVPLTYQGCCKPPTSFEKICI
C7 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C8 VMPVGCNEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCKPPTSFEKICV
C9 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C10 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C11 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C12 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C13 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C14 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C15 VLPVGCSEATCLVGESEPAVFEDDVVDVVKAPLIYQGCCKPPTSFEKICI
C16 VMPVGCSEATCLVGETGPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C17 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C18 VMPVGCNEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCKPPTSFEKICV
C19 VLPVGCSEATCLVGESEPAVFEDDVVGVVKTPLTYQGCCKPPTSFEKICI
C20 VMPVGCNEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCKPPTSFEKICV
C21 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C22 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C23 VLPVGCSEATCLVGESEPAVFEDDVVDVVKAPLIYQGCCKPPTSFEKICI
C24 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C25 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C26 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C27 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C28 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C29 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
::****.******** ***.*****.***.** ********:******:
C1 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C2 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C3 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C4 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C5 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C6 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C7 VDKLYMAKCGDQFYPLVVDNDTVGVLDQCWRFPCA
C8 VDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCA
C9 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C10 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C11 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C12 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C13 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C14 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C15 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C16 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C17 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C18 VDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCA
C19 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C20 VDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCA
C21 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C22 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C23 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C24 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C25 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C26 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C27 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C28 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C29 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
***************:******:************
-- Starting log on Wed Nov 02 20:14:22 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.86 sec, SCORE=1000, Nseq=29, Len=585
C1 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDNEVVV
C2 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRESLDNEVVV
C3 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C4 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C5 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C6 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDKEVVV
C7 VNPILFVDQYGCDYTGCLAKGLEDYGECTLDEMKELFPVWRDSLGSDVIV
C8 VKSILFLDQYGCDYTGRLAKGLEDYGDCTLEEMKELFPVWCDSLDNEVVV
C9 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C10 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C11 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C12 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C13 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C14 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C15 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDNEVVV
C16 VKPVLFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWCDSLDKEVVV
C17 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C18 VKSILFLDQYGCDYTGRLAKGLEDYGDCTLEEMKELFPVWCDSLDNEVVV
C19 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRESLDNEVVV
C20 VKSILFLDQYGCDYTGRLAKGLEDYGDCTLEEMKELFPVWCDSLDNEVVV
C21 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C22 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C23 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDNEVVV
C24 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C25 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C26 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C27 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C28 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C29 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
*:.:**:********* *********: **.***** *** :**..:*:*
C1 AWHVDRDPRAVMRLQTLATLRSIDYVGQPTEDVVDGDVVVREPAHLLAAD
C2 AWHVDRDPRAVMRLQTLATLRSIDYVGQPTEDVVDGDVVVRAPAHLLAAD
C3 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C4 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C5 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C6 AWHVDRDPRAVMRLQTLATIRSIDYVGQPTEDVVDGDVVVREPAHLLAAN
C7 AWQVVRDPRAVMRMQTLATIRSIEYVGQPVEDLVDGDVVMREPAHLLSAN
C8 AWHVDRDPRAVMRLQTLATIRSIGYVGQPTEDLVDGDVVVREPAHLLAAN
C9 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C10 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C11 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C12 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C13 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C14 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C15 AWHVDRDPRAVMRLQTLATVRSIDYVGQPTEDVVDGDVVVREPAHLLAAN
C16 AWHVDRDPRAVMRLQTLATVRSIDYVGQPTEDVVDGDVVVREPAHLLAAN
C17 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C18 AWHVDRDPRAVMRLQTLATIRSIGYVGQPTEDLVDGDVVVREPAHLLAAN
C19 AWHVDRDPRAVMRLQTLATLRSIDYVGQPTEDVVDGDVVVREPAHLLAAD
C20 AWHVDRDPRAVMRLQTLATVRCIGYVGQPTEDLVDGDVVVREPAHLLAAN
C21 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C22 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C23 AWHVDRDPRAVMRLQTLATVRSIDYVGQPTEDVVDGDVVVREPAHLLAAN
C24 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C25 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C26 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C27 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C28 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C29 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
**:* *****.**:*****:*.* ***** **:******:* *****:.:
C1 AVVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCDF
C2 ALVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCDF
C3 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C4 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C5 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C6 AIVKRLPRLVETMLYADSSVTEFCYKTKLGDCGFITQFGYVDCCGDACDF
C7 AVVKRLPRLVEAMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCDF
C8 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDACDF
C9 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C10 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C11 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C12 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C13 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C14 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C15 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C16 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCNCGFITQFGYVDCCGDTCDF
C17 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C18 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDACDF
C19 ALVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCDF
C20 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDACDF
C21 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C22 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C23 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C24 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C25 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C26 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C27 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C28 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C29 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
*:*********:***:************* :***************:*.*
C1 RGWVPGNMLDGFPCPGCSKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C2 RGWVPGNMLDGFPCPGCSKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C3 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C4 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C5 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C6 RGWVPGNMMDGFPCPGCSRSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C7 RGWVPGNMMDGFPCPGCSKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C8 RGWVPGNMMDGFLCPGCSKSYMPWELEAQSSGVIPKGGVLFTQSTDTVNR
C9 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C10 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C11 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C12 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C13 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C14 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C15 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C16 RGWVPGNMMDGFPCPGCSKNYMPWELEAQSSGVIPEGAVLFTVSNDTVNR
C17 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C18 RGWVPGNMMDGFLCPGCSKSYMPWELEAQSSGVIPKGGVLFTQSTDTVNR
C19 RGWVPGNMLDGFPCPGCSKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C20 RGWVPGNMMDGFLCPGCSKSYMPWELEAQSSGVIPKGGVLFTQSTDTVNR
C21 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C22 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C23 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C24 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C25 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C26 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C27 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C28 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C29 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
****.***:*** **** :.***************:*.**** *.*****
C1 EAFKLYGHAVVPFGSAVYWSPYPGMWLPVVWSSVKSYSGLTYTGVVGCKA
C2 EAFKLYGHAVVPFGSAVYWSPYPGMWLPVVWSSVKSYSGLTYTGVVGCKA
C3 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C4 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C5 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C6 ESFKLYGHAVAPFGSAVYWSPYPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C7 ESFKLYGHAVVPFGSAAYWSPYPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C8 ESFKLYGHAVVPFGSAVYWSPYPGMWLPVIWSSVKSYADLTYTGVVGCKA
C9 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C10 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C11 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C12 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C13 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C14 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C15 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C16 ESFKIYGHAVVPFGGCVYWSPYPGMWLPVIWSSVKSYSGLTYTGAVGCKA
C17 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C18 ESFKLYGHAVVPFGSAVYWSPYPGMWLPVIWSSVKSYADLTYTGVVGCKA
C19 EAFKLYGHAVVPFGSAVYWSPYPGMWLPVVWSSVKSYSGLTYTGVVGCKA
C20 ESFKLYGHAVVPFGSAVYWSPYPGMWLPVIWSSVKSYADLTYTGVVGCKA
C21 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C22 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C23 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C24 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C25 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C26 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C27 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C28 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C29 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
*:**:*****.***...**** *******:*******: *****.*****
C1 IVQETDAICRSLYMDYVQHKCGNLDQRATLGLDDVYHRQLLVNRGDYSLL
C2 IVQETDAICRSLYMDYVQHKCGNLDQRATLGLDDVYHRQLLVNRGDYSLL
C3 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C4 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C5 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C6 IVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C7 IVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C8 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C9 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C10 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C11 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C12 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C13 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C14 IVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLL
C15 IVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C16 IVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C17 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C18 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C19 IVQETDAICRSLYMDYVQHKCGNLDQRATLGLDDVYHRQLLVNRGDYSLL
C20 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C21 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C22 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C23 IVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C24 IVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLL
C25 IVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLL
C26 IVQETDAICRFLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C27 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C28 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C29 IVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLL
*****:**** *************:*** **:******************
C1 LENVDLFVKRRAEFACKFATCGDGFVPLLLDGLVPRSYYLIKSGQAYTSM
C2 LENVDLFVKRRAEFACKFATCGDGFVPLLLDGLVPRSYYLIKSGQAYTSM
C3 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
C4 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C5 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
C6 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C7 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C8 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C9 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C10 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C11 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C12 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C13 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C14 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
C15 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSV
C16 LENLDLFIKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSV
C17 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C18 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C19 LENVDLFVKRRAEFACKFATCGDGFVPLLLDGLVPRSYYLIKSGQAYTSM
C20 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C21 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C22 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C23 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSV
C24 LENVDLFVKRRAEFACKFATCGDGLAPLLLDGLVPRSYYLIKSGQAFTSL
C25 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
C26 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
C27 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C28 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C29 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
***:***:****************:.********************:**:
C1 MVNFSHEVIDMCMDMALLFMHDVKVATKYVKKFTGKLAVRFKALGVAVVR
C2 MVNFSHEVIDMCMDMALLFMHDVKVATKYVKKFTGKLAVRFKALGVAVVR
C3 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C4 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C5 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C6 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C7 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C8 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C9 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C10 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C11 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C12 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C13 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C14 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C15 MVNFSREVIDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C16 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C17 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKAWGVAVVR
C18 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C19 MVNFSHEVIDMCMDMALLFMHDVKVATKYVKKFTGKLAVRFKALGVAVVR
C20 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C21 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C22 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C23 MVNFSREVIDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C24 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C25 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C26 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKVAVRFKALGIAVVR
C27 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C28 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C29 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
*****:** ***********************.***:****** *:****
C1 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEAPELVKNFV
C2 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEAPELVKNFV
C3 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C4 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C5 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C6 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C7 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C8 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFLSDVPELVKNFV
C9 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C10 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C11 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C12 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C13 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C14 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C15 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C16 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFVQDVPELVKNFV
C17 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C18 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFLSDVPELVKNFV
C19 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEAPELVKNFV
C20 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFLSDVPELVKNFV
C21 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C22 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C23 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C24 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C25 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C26 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFIQEVPELVKNFV
C27 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C28 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C29 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
*********** ********************** ***:.:.********
C1 AKFRAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKFYEVVQKSLSAY
C2 AKFRAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C3 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C4 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C5 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C6 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C7 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C8 DKFKVFFKVLIDSMSVSVLSGLTVVKTASNRVCLAGCKVYEVVQKRLSAY
C9 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C10 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C11 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C12 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C13 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C14 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C15 DKFKAFFKVLIDSMSVTILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C16 DKFKAFFKVLIDSMSVSILSGLTVVKAASNRVCLAGSKVYAVVQKSLSAY
C17 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C18 DKFKVFFKVLIDSMSVSVLSGLTVVKTASNRVCLAGCKVYEVVQKRLSAY
C19 AKFRAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C20 DKFKVFFKVLIDSMSVSVLSGLTVVKTASNRVCLAGCKVYEVVQKRLSAY
C21 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C22 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C23 DKFKAFFKVLIDSMSVTILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C24 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C25 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C26 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C27 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C28 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C29 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
**:.***********::********:*********.*.* **** *.**
C1 VLPVGCSEATCLVGESEPAVFEDDVVGVVKTPLTYQGCCKPPTSFEKICI
C2 VLPVGCSEATCLVGESEPAVFEDDVVGVVKTPLTYQGCCKPPTSFEKICI
C3 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C4 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C5 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C6 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKVPLTYQGCCKPPTSFEKICI
C7 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C8 VMPVGCNEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCKPPTSFEKICV
C9 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C10 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C11 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C12 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C13 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C14 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C15 VLPVGCSEATCLVGESEPAVFEDDVVDVVKAPLIYQGCCKPPTSFEKICI
C16 VMPVGCSEATCLVGETGPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C17 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C18 VMPVGCNEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCKPPTSFEKICV
C19 VLPVGCSEATCLVGESEPAVFEDDVVGVVKTPLTYQGCCKPPTSFEKICI
C20 VMPVGCNEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCKPPTSFEKICV
C21 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C22 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C23 VLPVGCSEATCLVGESEPAVFEDDVVDVVKAPLIYQGCCKPPTSFEKICI
C24 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C25 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C26 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C27 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C28 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C29 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
::****.******** ***.*****.***.** ********:******:
C1 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C2 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C3 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C4 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C5 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C6 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C7 VDKLYMAKCGDQFYPLVVDNDTVGVLDQCWRFPCA
C8 VDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCA
C9 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C10 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C11 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C12 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C13 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C14 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C15 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C16 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C17 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C18 VDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCA
C19 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C20 VDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCA
C21 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C22 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C23 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C24 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C25 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C26 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C27 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C28 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C29 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
***************:******:************
-- Starting log on Wed Nov 02 22:16:06 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus.result/gapped_alignment/codeml,A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 29 taxa and 1755 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C1
Taxon 2 -> C10
Taxon 3 -> C11
Taxon 4 -> C12
Taxon 5 -> C13
Taxon 6 -> C14
Taxon 7 -> C15
Taxon 8 -> C16
Taxon 9 -> C17
Taxon 10 -> C18
Taxon 11 -> C19
Taxon 12 -> C2
Taxon 13 -> C20
Taxon 14 -> C21
Taxon 15 -> C22
Taxon 16 -> C23
Taxon 17 -> C24
Taxon 18 -> C25
Taxon 19 -> C26
Taxon 20 -> C27
Taxon 21 -> C28
Taxon 22 -> C29
Taxon 23 -> C3
Taxon 24 -> C4
Taxon 25 -> C5
Taxon 26 -> C6
Taxon 27 -> C7
Taxon 28 -> C8
Taxon 29 -> C9
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1667427368
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 818180817
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 9863475003
Seed = 106866823
Swapseed = 1667427368
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 65 unique site patterns
Division 2 has 47 unique site patterns
Division 3 has 184 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -12162.580410 -- 80.292429
Chain 2 -- -12210.055531 -- 80.292429
Chain 3 -- -12783.288978 -- 80.292429
Chain 4 -- -11986.713031 -- 80.292429
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -12280.640318 -- 80.292429
Chain 2 -- -12494.949394 -- 80.292429
Chain 3 -- -11782.067735 -- 80.292429
Chain 4 -- -11949.762828 -- 80.292429
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-12162.580] (-12210.056) (-12783.289) (-11986.713) * [-12280.640] (-12494.949) (-11782.068) (-11949.763)
1000 -- (-5862.049) [-5795.408] (-5924.387) (-5819.759) * (-6023.735) [-5862.285] (-5967.581) (-5932.420) -- 0:33:18
2000 -- [-5553.698] (-5558.659) (-5573.202) (-5544.280) * (-5586.190) [-5502.573] (-5564.004) (-5529.264) -- 0:33:16
3000 -- (-5499.150) (-5490.567) (-5463.837) [-5436.440] * (-5468.470) (-5436.781) (-5494.944) [-5442.100] -- 0:33:14
4000 -- (-5464.727) (-5462.732) [-5419.965] (-5420.331) * (-5426.919) (-5414.798) (-5441.767) [-5422.742] -- 0:29:03
5000 -- (-5463.687) (-5430.677) (-5414.354) [-5408.328] * (-5412.264) (-5402.031) [-5421.906] (-5425.987) -- 0:29:51
Average standard deviation of split frequencies: 0.085516
6000 -- (-5438.721) [-5406.453] (-5415.264) (-5419.312) * [-5402.046] (-5408.774) (-5410.139) (-5422.110) -- 0:30:22
7000 -- (-5421.352) (-5416.506) (-5419.121) [-5401.635] * [-5418.877] (-5413.425) (-5404.741) (-5409.356) -- 0:28:22
8000 -- [-5407.744] (-5414.539) (-5408.401) (-5396.266) * (-5430.139) [-5402.942] (-5429.293) (-5412.002) -- 0:28:56
9000 -- (-5422.559) [-5406.492] (-5407.084) (-5406.853) * (-5427.380) [-5400.865] (-5422.125) (-5407.628) -- 0:29:21
10000 -- (-5430.883) (-5418.077) (-5424.905) [-5395.099] * [-5410.105] (-5412.914) (-5405.972) (-5412.490) -- 0:28:03
Average standard deviation of split frequencies: 0.064282
11000 -- (-5435.757) [-5404.775] (-5428.898) (-5408.180) * (-5427.968) [-5415.347] (-5415.469) (-5408.902) -- 0:28:28
12000 -- (-5413.398) [-5415.817] (-5434.155) (-5417.203) * (-5418.656) [-5416.855] (-5416.432) (-5417.951) -- 0:28:49
13000 -- (-5409.444) [-5409.246] (-5406.591) (-5409.825) * (-5421.244) (-5418.907) (-5403.246) [-5401.388] -- 0:27:50
14000 -- (-5416.789) (-5410.839) (-5408.246) [-5420.347] * (-5406.179) (-5428.539) (-5406.308) [-5392.589] -- 0:28:10
15000 -- (-5418.695) [-5397.799] (-5407.122) (-5400.841) * (-5414.186) (-5426.906) [-5407.912] (-5410.787) -- 0:28:27
Average standard deviation of split frequencies: 0.068032
16000 -- (-5432.350) (-5428.151) (-5423.522) [-5410.045] * (-5417.228) (-5437.840) (-5419.432) [-5397.540] -- 0:27:40
17000 -- (-5448.821) (-5433.754) [-5420.082] (-5404.739) * (-5416.638) (-5429.419) [-5389.163] (-5412.704) -- 0:27:56
18000 -- (-5427.531) [-5409.061] (-5416.242) (-5407.819) * (-5424.380) (-5433.006) [-5406.989] (-5400.319) -- 0:28:11
19000 -- (-5415.056) [-5398.824] (-5418.191) (-5399.627) * (-5410.339) (-5409.001) [-5401.340] (-5425.891) -- 0:28:23
20000 -- [-5404.226] (-5416.946) (-5415.420) (-5391.823) * (-5420.671) [-5404.805] (-5420.421) (-5403.028) -- 0:27:46
Average standard deviation of split frequencies: 0.044725
21000 -- (-5412.790) (-5413.536) (-5411.201) [-5407.315] * (-5415.880) (-5414.176) (-5410.250) [-5391.361] -- 0:27:58
22000 -- (-5426.639) (-5399.062) (-5418.258) [-5409.234] * (-5410.818) (-5419.922) [-5404.952] (-5403.761) -- 0:28:09
23000 -- (-5426.025) [-5406.331] (-5407.637) (-5424.911) * (-5422.033) (-5424.384) (-5412.364) [-5402.032] -- 0:28:19
24000 -- (-5426.129) (-5409.514) [-5416.833] (-5418.236) * (-5419.318) (-5426.987) [-5416.915] (-5409.088) -- 0:27:47
25000 -- (-5410.651) (-5428.089) [-5406.778] (-5413.466) * (-5420.283) (-5408.866) [-5416.863] (-5412.737) -- 0:27:57
Average standard deviation of split frequencies: 0.050091
26000 -- (-5406.111) [-5398.842] (-5435.517) (-5413.599) * (-5413.194) (-5407.055) (-5425.611) [-5419.088] -- 0:28:05
27000 -- [-5398.960] (-5406.396) (-5430.171) (-5406.836) * (-5418.287) [-5409.169] (-5423.868) (-5417.946) -- 0:27:37
28000 -- (-5407.477) [-5405.283] (-5408.187) (-5410.241) * (-5411.956) [-5399.088] (-5406.829) (-5397.589) -- 0:27:46
29000 -- [-5401.788] (-5408.429) (-5414.184) (-5418.866) * (-5440.687) (-5394.870) [-5393.147] (-5423.128) -- 0:27:54
30000 -- [-5406.690] (-5409.881) (-5414.570) (-5440.692) * (-5432.415) [-5405.876] (-5412.864) (-5409.159) -- 0:27:29
Average standard deviation of split frequencies: 0.054974
31000 -- [-5407.928] (-5411.787) (-5422.410) (-5421.633) * (-5417.313) (-5408.230) [-5403.722] (-5411.630) -- 0:27:36
32000 -- (-5419.376) (-5423.154) (-5409.259) [-5410.411] * (-5426.168) [-5410.992] (-5416.994) (-5407.164) -- 0:27:43
33000 -- (-5410.523) (-5427.592) (-5413.158) [-5414.363] * [-5404.502] (-5409.939) (-5413.856) (-5418.885) -- 0:27:50
34000 -- (-5402.982) (-5419.557) [-5403.557] (-5417.986) * (-5416.412) [-5404.268] (-5405.446) (-5408.998) -- 0:27:27
35000 -- (-5411.509) [-5392.230] (-5419.264) (-5414.981) * (-5418.370) (-5439.087) (-5410.940) [-5399.961] -- 0:27:34
Average standard deviation of split frequencies: 0.055886
36000 -- (-5410.037) [-5403.985] (-5429.409) (-5419.478) * (-5418.479) (-5429.433) (-5427.007) [-5400.938] -- 0:27:40
37000 -- [-5408.164] (-5412.142) (-5415.145) (-5409.339) * (-5394.992) (-5423.811) [-5410.789] (-5418.149) -- 0:27:19
38000 -- (-5443.100) (-5426.629) [-5401.574] (-5408.521) * (-5410.087) [-5404.472] (-5410.586) (-5404.903) -- 0:27:25
39000 -- [-5409.458] (-5424.708) (-5394.567) (-5418.132) * (-5416.974) [-5410.592] (-5419.811) (-5413.341) -- 0:27:30
40000 -- [-5422.195] (-5408.928) (-5404.838) (-5417.229) * [-5390.148] (-5417.191) (-5421.405) (-5419.316) -- 0:27:36
Average standard deviation of split frequencies: 0.056210
41000 -- (-5419.005) (-5415.454) [-5401.176] (-5417.595) * (-5416.764) [-5417.614] (-5403.291) (-5415.820) -- 0:27:17
42000 -- (-5402.799) [-5413.308] (-5411.737) (-5422.423) * (-5411.664) (-5410.574) [-5404.945] (-5425.724) -- 0:27:22
43000 -- (-5401.394) [-5407.220] (-5413.619) (-5402.673) * [-5401.593] (-5412.208) (-5400.020) (-5404.423) -- 0:27:26
44000 -- (-5433.866) [-5405.317] (-5404.674) (-5408.863) * (-5423.012) (-5417.456) [-5410.599] (-5399.011) -- 0:27:09
45000 -- (-5420.271) [-5407.419] (-5405.453) (-5423.534) * [-5421.630] (-5402.950) (-5404.288) (-5431.617) -- 0:27:14
Average standard deviation of split frequencies: 0.052476
46000 -- (-5421.205) [-5407.300] (-5415.541) (-5422.090) * (-5410.908) (-5401.172) [-5403.124] (-5419.844) -- 0:27:18
47000 -- [-5421.322] (-5414.331) (-5417.317) (-5442.478) * (-5403.096) [-5415.675] (-5401.286) (-5408.548) -- 0:27:02
48000 -- (-5427.552) [-5399.474] (-5431.653) (-5410.939) * (-5401.066) (-5416.972) [-5407.693] (-5424.014) -- 0:27:06
49000 -- (-5423.012) (-5397.081) [-5396.169] (-5403.978) * (-5422.671) (-5401.814) (-5412.140) [-5414.233] -- 0:27:10
50000 -- (-5415.180) (-5404.877) [-5404.824] (-5417.420) * [-5404.481] (-5423.560) (-5421.744) (-5407.488) -- 0:27:14
Average standard deviation of split frequencies: 0.047351
51000 -- (-5421.151) (-5406.193) [-5403.023] (-5410.408) * (-5418.405) (-5405.894) [-5392.745] (-5405.729) -- 0:26:58
52000 -- [-5412.876] (-5429.317) (-5407.536) (-5419.036) * (-5408.085) (-5412.273) [-5397.790] (-5423.261) -- 0:27:02
53000 -- (-5415.082) [-5400.885] (-5426.199) (-5406.091) * (-5410.146) (-5401.452) (-5399.405) [-5420.799] -- 0:27:05
54000 -- (-5413.823) [-5405.539] (-5418.896) (-5402.636) * (-5417.825) (-5400.907) [-5388.107] (-5399.935) -- 0:26:51
55000 -- [-5410.605] (-5420.918) (-5426.357) (-5408.758) * (-5412.763) (-5415.226) (-5395.762) [-5407.271] -- 0:26:55
Average standard deviation of split frequencies: 0.046222
56000 -- (-5414.373) (-5432.721) (-5432.561) [-5396.858] * (-5422.606) (-5427.543) [-5407.900] (-5409.403) -- 0:26:58
57000 -- (-5406.560) (-5411.739) (-5416.622) [-5405.715] * (-5427.126) [-5403.442] (-5425.734) (-5406.346) -- 0:26:44
58000 -- (-5414.095) (-5410.856) (-5418.347) [-5399.428] * (-5407.034) (-5420.188) [-5422.793] (-5412.985) -- 0:26:47
59000 -- [-5394.680] (-5414.635) (-5407.785) (-5415.687) * (-5426.507) (-5413.250) [-5398.407] (-5420.051) -- 0:26:50
60000 -- [-5404.175] (-5417.848) (-5417.921) (-5422.083) * (-5415.179) (-5417.781) (-5413.114) [-5399.988] -- 0:26:38
Average standard deviation of split frequencies: 0.046766
61000 -- [-5401.214] (-5410.033) (-5404.380) (-5420.027) * (-5418.956) (-5424.936) (-5406.001) [-5400.149] -- 0:26:40
62000 -- [-5397.451] (-5407.168) (-5407.915) (-5424.055) * (-5413.506) (-5412.613) (-5406.750) [-5407.405] -- 0:26:43
63000 -- [-5395.495] (-5442.251) (-5407.345) (-5413.702) * (-5419.519) (-5406.591) (-5419.026) [-5403.595] -- 0:26:31
64000 -- [-5390.948] (-5425.833) (-5418.032) (-5418.427) * (-5429.726) (-5434.984) (-5408.294) [-5393.523] -- 0:26:34
65000 -- (-5407.790) [-5398.271] (-5411.744) (-5430.966) * (-5429.736) [-5398.250] (-5420.154) (-5411.357) -- 0:26:36
Average standard deviation of split frequencies: 0.038093
66000 -- [-5402.951] (-5411.909) (-5427.469) (-5418.517) * (-5413.537) (-5405.961) [-5413.484] (-5419.144) -- 0:26:24
67000 -- (-5422.740) (-5401.189) (-5440.233) [-5413.435] * (-5402.145) [-5402.889] (-5398.309) (-5426.289) -- 0:26:27
68000 -- (-5406.215) (-5415.254) (-5427.141) [-5413.021] * (-5412.158) (-5407.090) [-5403.506] (-5426.403) -- 0:26:29
69000 -- [-5402.669] (-5404.151) (-5435.404) (-5424.852) * (-5425.572) (-5416.572) [-5406.374] (-5432.192) -- 0:26:18
70000 -- (-5418.679) [-5414.085] (-5411.278) (-5403.115) * (-5412.879) (-5413.189) (-5410.902) [-5414.050] -- 0:26:21
Average standard deviation of split frequencies: 0.036501
71000 -- (-5412.175) (-5406.541) [-5407.533] (-5418.545) * [-5416.140] (-5405.675) (-5423.680) (-5420.474) -- 0:26:23
72000 -- (-5418.164) (-5412.559) (-5420.261) [-5398.447] * (-5403.240) [-5407.945] (-5411.231) (-5429.726) -- 0:26:25
73000 -- (-5425.417) (-5406.175) (-5439.387) [-5405.843] * (-5410.745) [-5411.904] (-5426.378) (-5430.958) -- 0:26:14
74000 -- [-5422.655] (-5404.266) (-5422.321) (-5417.533) * (-5424.303) (-5426.625) [-5422.817] (-5430.915) -- 0:26:16
75000 -- (-5433.764) (-5430.134) [-5397.354] (-5411.382) * (-5418.460) (-5418.191) [-5402.711] (-5421.378) -- 0:26:18
Average standard deviation of split frequencies: 0.038051
76000 -- (-5439.477) [-5406.368] (-5417.776) (-5420.915) * [-5421.685] (-5410.110) (-5409.485) (-5425.979) -- 0:26:08
77000 -- [-5397.479] (-5415.607) (-5412.365) (-5417.274) * (-5416.752) [-5404.530] (-5402.843) (-5409.766) -- 0:26:10
78000 -- (-5411.007) (-5414.490) [-5415.294] (-5412.983) * (-5420.242) (-5411.893) (-5411.654) [-5407.322] -- 0:26:12
79000 -- (-5405.992) (-5416.286) [-5390.425] (-5414.581) * (-5407.273) [-5402.693] (-5412.864) (-5400.204) -- 0:26:02
80000 -- [-5397.201] (-5419.742) (-5404.747) (-5420.563) * (-5416.999) [-5412.375] (-5424.897) (-5396.467) -- 0:26:04
Average standard deviation of split frequencies: 0.034726
81000 -- (-5425.788) (-5413.605) (-5430.498) [-5402.782] * [-5406.511] (-5417.232) (-5425.099) (-5417.549) -- 0:26:05
82000 -- (-5406.783) (-5436.893) (-5426.203) [-5408.418] * [-5394.614] (-5413.485) (-5407.603) (-5406.209) -- 0:25:56
83000 -- [-5409.198] (-5437.136) (-5411.220) (-5412.530) * [-5403.683] (-5404.456) (-5428.613) (-5410.131) -- 0:25:57
84000 -- (-5410.326) (-5423.568) (-5408.985) [-5400.740] * [-5387.527] (-5424.010) (-5418.610) (-5408.999) -- 0:25:59
85000 -- (-5434.238) (-5416.352) (-5421.806) [-5414.072] * (-5409.207) (-5413.372) (-5417.795) [-5404.326] -- 0:25:50
Average standard deviation of split frequencies: 0.030656
86000 -- (-5402.537) [-5392.786] (-5421.015) (-5409.177) * (-5410.066) [-5402.654] (-5406.977) (-5420.282) -- 0:25:51
87000 -- [-5417.570] (-5395.916) (-5417.504) (-5420.590) * (-5430.398) (-5399.922) [-5405.345] (-5413.182) -- 0:25:53
88000 -- (-5422.851) [-5387.531] (-5412.099) (-5423.702) * [-5410.433] (-5407.571) (-5401.980) (-5420.979) -- 0:25:44
89000 -- [-5410.642] (-5408.586) (-5417.951) (-5407.031) * (-5417.365) (-5415.575) (-5421.991) [-5406.956] -- 0:25:45
90000 -- [-5410.026] (-5397.102) (-5406.426) (-5407.626) * (-5405.638) (-5401.123) (-5437.346) [-5406.570] -- 0:25:47
Average standard deviation of split frequencies: 0.030705
91000 -- (-5408.902) (-5393.564) (-5416.513) [-5408.656] * (-5413.920) (-5404.461) [-5407.885] (-5425.229) -- 0:25:48
92000 -- (-5429.995) [-5407.968] (-5420.844) (-5402.476) * [-5406.208] (-5412.583) (-5411.278) (-5405.449) -- 0:25:39
93000 -- (-5410.815) (-5407.712) (-5427.731) [-5398.097] * [-5416.020] (-5415.678) (-5411.788) (-5409.794) -- 0:25:40
94000 -- (-5424.618) (-5412.253) (-5419.475) [-5414.522] * (-5411.958) (-5408.694) (-5425.537) [-5417.498] -- 0:25:42
95000 -- (-5420.725) [-5402.664] (-5400.471) (-5409.552) * [-5406.285] (-5403.135) (-5424.953) (-5416.218) -- 0:25:33
Average standard deviation of split frequencies: 0.028802
96000 -- (-5416.933) [-5408.844] (-5427.389) (-5421.563) * [-5407.528] (-5406.352) (-5401.925) (-5420.079) -- 0:25:34
97000 -- (-5410.115) [-5406.720] (-5419.418) (-5419.192) * (-5414.170) [-5400.916] (-5432.423) (-5419.414) -- 0:25:36
98000 -- (-5417.468) (-5411.071) (-5418.860) [-5396.274] * (-5423.062) [-5405.936] (-5416.970) (-5410.247) -- 0:25:27
99000 -- (-5419.176) [-5408.727] (-5428.418) (-5421.166) * (-5415.395) (-5416.970) (-5429.665) [-5403.390] -- 0:25:28
100000 -- (-5428.360) (-5415.435) (-5406.838) [-5406.798] * (-5401.789) (-5431.235) (-5407.142) [-5391.436] -- 0:25:30
Average standard deviation of split frequencies: 0.027906
101000 -- (-5429.253) (-5405.505) [-5393.495] (-5412.622) * (-5415.974) [-5404.149] (-5407.938) (-5405.519) -- 0:25:22
102000 -- [-5409.448] (-5418.011) (-5405.242) (-5420.420) * (-5410.860) (-5401.333) (-5413.514) [-5403.785] -- 0:25:23
103000 -- (-5411.364) (-5408.419) [-5411.639] (-5420.705) * (-5405.179) (-5423.328) (-5398.644) [-5400.294] -- 0:25:24
104000 -- [-5414.276] (-5407.122) (-5407.051) (-5425.855) * (-5408.373) (-5429.160) (-5402.544) [-5398.150] -- 0:25:16
105000 -- (-5399.931) (-5405.333) (-5408.647) [-5404.697] * (-5408.419) (-5409.237) (-5401.754) [-5409.710] -- 0:25:17
Average standard deviation of split frequencies: 0.029997
106000 -- [-5404.488] (-5416.537) (-5412.406) (-5433.109) * (-5402.737) (-5407.076) [-5394.611] (-5419.453) -- 0:25:18
107000 -- (-5400.231) (-5401.073) [-5400.035] (-5415.981) * [-5406.820] (-5417.495) (-5411.356) (-5414.616) -- 0:25:10
108000 -- [-5397.565] (-5396.292) (-5415.974) (-5408.297) * (-5409.684) [-5412.195] (-5424.918) (-5421.219) -- 0:25:11
109000 -- (-5407.111) (-5419.896) (-5417.504) [-5406.982] * [-5406.908] (-5416.815) (-5430.856) (-5423.049) -- 0:25:12
110000 -- (-5416.414) (-5397.214) [-5407.903] (-5411.849) * (-5411.381) [-5394.827] (-5416.778) (-5424.112) -- 0:25:04
Average standard deviation of split frequencies: 0.026495
111000 -- (-5406.013) [-5405.039] (-5411.033) (-5412.868) * (-5416.409) (-5413.757) (-5411.374) [-5394.371] -- 0:25:05
112000 -- [-5407.878] (-5408.150) (-5415.411) (-5408.599) * (-5416.694) (-5416.375) (-5408.482) [-5406.864] -- 0:25:06
113000 -- [-5411.587] (-5416.559) (-5392.936) (-5417.740) * (-5405.484) (-5421.494) [-5412.239] (-5406.162) -- 0:24:59
114000 -- (-5411.754) (-5412.616) [-5403.253] (-5413.067) * (-5422.082) (-5408.554) (-5412.691) [-5402.321] -- 0:24:59
115000 -- (-5428.645) (-5412.636) [-5398.715] (-5413.417) * (-5421.765) (-5420.232) (-5432.917) [-5405.834] -- 0:25:00
Average standard deviation of split frequencies: 0.026984
116000 -- (-5400.661) (-5407.690) (-5425.464) [-5408.537] * [-5406.675] (-5414.056) (-5429.580) (-5419.714) -- 0:24:53
117000 -- (-5406.584) [-5416.663] (-5418.943) (-5412.053) * (-5424.232) [-5409.156] (-5406.628) (-5431.972) -- 0:24:54
118000 -- (-5426.623) (-5394.205) (-5420.031) [-5393.265] * (-5421.093) [-5418.283] (-5412.846) (-5411.095) -- 0:24:54
119000 -- (-5422.648) (-5407.128) [-5417.606] (-5403.154) * (-5427.805) (-5407.577) [-5408.566] (-5400.494) -- 0:24:48
120000 -- [-5403.316] (-5402.978) (-5420.005) (-5408.995) * [-5401.744] (-5417.079) (-5414.327) (-5417.325) -- 0:24:48
Average standard deviation of split frequencies: 0.027591
121000 -- (-5430.435) [-5404.378] (-5405.663) (-5415.830) * [-5400.700] (-5414.934) (-5399.651) (-5410.462) -- 0:24:49
122000 -- (-5421.315) (-5418.167) [-5401.467] (-5414.525) * (-5394.865) (-5418.300) [-5399.878] (-5414.180) -- 0:24:42
123000 -- (-5420.591) (-5407.338) [-5399.332] (-5414.498) * [-5403.201] (-5427.275) (-5412.293) (-5418.755) -- 0:24:43
124000 -- (-5429.598) (-5421.085) [-5405.344] (-5403.467) * (-5410.253) [-5400.680] (-5426.802) (-5413.553) -- 0:24:43
125000 -- (-5411.931) (-5419.044) [-5397.975] (-5427.515) * (-5395.684) (-5420.450) [-5412.239] (-5415.084) -- 0:24:37
Average standard deviation of split frequencies: 0.029167
126000 -- (-5402.144) (-5422.262) (-5405.273) [-5415.936] * (-5416.338) (-5424.295) (-5422.865) [-5419.731] -- 0:24:37
127000 -- (-5404.647) (-5407.444) (-5423.857) [-5406.224] * [-5408.216] (-5414.422) (-5410.100) (-5403.862) -- 0:24:37
128000 -- [-5405.573] (-5404.465) (-5410.574) (-5393.492) * (-5406.534) (-5411.674) (-5423.231) [-5415.860] -- 0:24:31
129000 -- (-5428.271) [-5413.660] (-5432.257) (-5404.002) * (-5427.146) (-5404.808) (-5410.104) [-5410.046] -- 0:24:31
130000 -- (-5428.182) (-5408.265) (-5432.468) [-5406.591] * (-5408.718) (-5407.520) [-5398.052] (-5421.857) -- 0:24:32
Average standard deviation of split frequencies: 0.028052
131000 -- (-5416.314) (-5419.296) (-5412.260) [-5401.691] * [-5400.863] (-5419.351) (-5408.563) (-5418.500) -- 0:24:26
132000 -- (-5418.211) [-5396.528] (-5427.947) (-5436.751) * [-5405.146] (-5403.565) (-5422.564) (-5410.193) -- 0:24:26
133000 -- (-5421.914) (-5400.525) (-5418.211) [-5405.240] * (-5413.367) [-5406.887] (-5425.557) (-5402.422) -- 0:24:26
134000 -- [-5411.771] (-5421.188) (-5407.828) (-5404.856) * (-5414.487) (-5427.175) [-5402.702] (-5411.113) -- 0:24:20
135000 -- [-5396.313] (-5429.871) (-5398.173) (-5416.446) * (-5410.902) [-5413.135] (-5422.168) (-5409.016) -- 0:24:20
Average standard deviation of split frequencies: 0.029030
136000 -- [-5397.534] (-5414.262) (-5415.742) (-5412.138) * (-5404.523) (-5411.438) [-5401.685] (-5416.146) -- 0:24:21
137000 -- (-5409.262) (-5413.901) (-5407.485) [-5406.755] * [-5411.933] (-5425.750) (-5420.435) (-5408.509) -- 0:24:15
138000 -- [-5396.263] (-5407.246) (-5421.525) (-5409.997) * (-5426.884) (-5403.179) [-5402.823] (-5421.320) -- 0:24:15
139000 -- (-5397.928) [-5407.062] (-5411.278) (-5402.101) * (-5405.236) [-5399.785] (-5418.751) (-5421.375) -- 0:24:15
140000 -- (-5412.599) [-5406.724] (-5408.043) (-5422.635) * [-5397.389] (-5416.499) (-5409.628) (-5414.604) -- 0:24:09
Average standard deviation of split frequencies: 0.029340
141000 -- (-5412.787) (-5416.215) [-5391.417] (-5446.500) * [-5413.173] (-5431.609) (-5411.412) (-5426.428) -- 0:24:09
142000 -- [-5401.585] (-5416.237) (-5421.383) (-5421.326) * (-5411.913) (-5426.565) [-5398.941] (-5413.113) -- 0:24:04
143000 -- (-5420.649) [-5399.516] (-5404.879) (-5420.652) * (-5403.977) [-5401.575] (-5408.950) (-5412.563) -- 0:24:04
144000 -- (-5435.367) (-5407.566) [-5410.501] (-5422.821) * (-5424.395) [-5397.941] (-5412.291) (-5412.375) -- 0:24:04
145000 -- (-5399.336) [-5396.283] (-5417.475) (-5424.362) * [-5408.559] (-5406.327) (-5420.865) (-5410.285) -- 0:24:04
Average standard deviation of split frequencies: 0.029652
146000 -- [-5394.738] (-5401.144) (-5416.498) (-5405.295) * (-5405.411) [-5399.168] (-5422.026) (-5423.202) -- 0:23:58
147000 -- (-5404.651) (-5410.928) [-5399.357] (-5414.769) * (-5409.879) (-5413.495) [-5428.428] (-5397.030) -- 0:23:59
148000 -- (-5418.916) (-5411.301) (-5408.614) [-5399.980] * (-5413.434) (-5417.612) (-5407.924) [-5412.652] -- 0:23:59
149000 -- [-5397.552] (-5414.362) (-5402.541) (-5430.297) * (-5418.822) (-5423.939) (-5412.979) [-5409.859] -- 0:23:53
150000 -- (-5418.721) (-5417.309) [-5405.715] (-5409.176) * [-5416.210] (-5403.377) (-5402.705) (-5419.475) -- 0:23:53
Average standard deviation of split frequencies: 0.030011
151000 -- (-5416.836) (-5419.207) (-5425.994) [-5402.858] * (-5412.924) (-5430.087) (-5405.194) [-5411.502] -- 0:23:53
152000 -- (-5415.272) [-5407.041] (-5421.145) (-5422.324) * [-5392.749] (-5427.205) (-5418.537) (-5414.377) -- 0:23:48
153000 -- (-5428.098) [-5419.813] (-5418.940) (-5405.929) * (-5424.610) [-5407.411] (-5414.555) (-5423.995) -- 0:23:48
154000 -- (-5411.373) (-5418.600) (-5415.156) [-5391.457] * (-5425.876) (-5418.377) [-5413.366] (-5404.005) -- 0:23:48
155000 -- (-5408.888) (-5407.893) [-5395.824] (-5408.677) * [-5405.710] (-5407.015) (-5418.033) (-5401.091) -- 0:23:42
Average standard deviation of split frequencies: 0.030029
156000 -- [-5411.715] (-5408.675) (-5408.937) (-5423.044) * (-5415.712) [-5404.537] (-5409.617) (-5412.370) -- 0:23:42
157000 -- (-5412.717) (-5411.622) (-5431.018) [-5412.289] * (-5420.601) [-5399.462] (-5405.365) (-5423.498) -- 0:23:42
158000 -- (-5409.335) (-5415.967) [-5408.069] (-5422.256) * (-5422.686) [-5395.898] (-5412.655) (-5420.419) -- 0:23:37
159000 -- (-5410.495) (-5414.718) [-5414.788] (-5418.911) * (-5406.384) [-5391.022] (-5415.536) (-5437.798) -- 0:23:37
160000 -- (-5433.410) [-5398.645] (-5413.321) (-5395.517) * (-5411.292) (-5397.751) [-5401.791] (-5437.350) -- 0:23:37
Average standard deviation of split frequencies: 0.028217
161000 -- [-5402.269] (-5417.319) (-5435.621) (-5412.602) * (-5409.489) (-5410.279) [-5404.191] (-5410.478) -- 0:23:32
162000 -- (-5415.492) (-5413.774) [-5402.936] (-5424.729) * (-5413.643) (-5402.026) [-5396.182] (-5424.445) -- 0:23:32
163000 -- (-5414.326) (-5410.628) [-5400.311] (-5416.087) * (-5399.481) (-5409.667) [-5410.464] (-5416.689) -- 0:23:32
164000 -- (-5422.730) (-5417.862) [-5402.005] (-5423.035) * (-5411.275) (-5435.166) (-5408.861) [-5407.099] -- 0:23:26
165000 -- [-5410.780] (-5411.049) (-5403.285) (-5408.472) * (-5414.774) (-5411.743) (-5410.092) [-5403.681] -- 0:23:26
Average standard deviation of split frequencies: 0.028635
166000 -- (-5423.261) [-5405.960] (-5423.767) (-5408.325) * [-5419.408] (-5417.872) (-5406.860) (-5408.520) -- 0:23:26
167000 -- (-5424.759) [-5401.707] (-5414.094) (-5394.850) * (-5404.686) (-5423.463) [-5406.089] (-5405.479) -- 0:23:21
168000 -- (-5421.263) (-5402.095) (-5443.983) [-5397.666] * [-5394.079] (-5425.048) (-5411.148) (-5400.077) -- 0:23:21
169000 -- (-5413.527) [-5401.135] (-5418.443) (-5408.127) * (-5410.786) (-5410.179) (-5419.352) [-5397.629] -- 0:23:21
170000 -- (-5415.491) [-5403.754] (-5423.529) (-5412.078) * (-5427.326) (-5437.767) [-5400.911] (-5408.640) -- 0:23:16
Average standard deviation of split frequencies: 0.029737
171000 -- [-5406.275] (-5405.963) (-5411.077) (-5397.636) * (-5420.597) (-5420.349) [-5405.464] (-5398.857) -- 0:23:16
172000 -- (-5402.777) [-5403.917] (-5400.730) (-5425.644) * (-5430.016) (-5407.114) [-5412.316] (-5401.008) -- 0:23:16
173000 -- (-5421.893) [-5401.184] (-5407.695) (-5409.576) * (-5422.254) (-5417.041) [-5409.945] (-5398.473) -- 0:23:11
174000 -- [-5409.704] (-5389.893) (-5410.502) (-5420.427) * (-5414.290) (-5414.570) [-5408.062] (-5410.555) -- 0:23:10
175000 -- (-5411.710) [-5413.504] (-5423.252) (-5418.468) * (-5432.704) (-5414.296) [-5401.482] (-5405.623) -- 0:23:10
Average standard deviation of split frequencies: 0.028034
176000 -- (-5419.326) (-5404.859) (-5422.843) [-5407.086] * (-5423.356) [-5394.889] (-5404.496) (-5425.064) -- 0:23:05
177000 -- (-5410.218) [-5415.525] (-5412.831) (-5404.267) * (-5435.185) (-5416.954) (-5414.438) [-5409.623] -- 0:23:05
178000 -- (-5412.550) [-5401.551] (-5436.680) (-5403.518) * (-5415.725) (-5407.598) [-5410.588] (-5410.957) -- 0:23:05
179000 -- [-5400.473] (-5407.265) (-5418.376) (-5411.574) * [-5395.225] (-5407.861) (-5424.751) (-5415.305) -- 0:23:05
180000 -- (-5405.010) (-5417.655) (-5413.170) [-5406.106] * (-5414.072) [-5408.734] (-5417.172) (-5421.321) -- 0:23:00
Average standard deviation of split frequencies: 0.025025
181000 -- (-5423.258) (-5418.197) [-5397.077] (-5409.336) * (-5400.430) [-5393.249] (-5442.403) (-5416.071) -- 0:23:00
182000 -- (-5432.510) (-5403.472) [-5406.692] (-5420.165) * (-5409.184) [-5404.249] (-5415.021) (-5426.502) -- 0:22:59
183000 -- [-5410.220] (-5410.112) (-5414.175) (-5431.032) * (-5405.369) (-5409.666) [-5394.185] (-5407.872) -- 0:22:55
184000 -- [-5400.954] (-5402.781) (-5418.042) (-5423.748) * (-5405.151) (-5409.420) (-5422.758) [-5408.848] -- 0:22:54
185000 -- [-5399.999] (-5425.667) (-5409.387) (-5417.709) * (-5414.514) (-5402.748) [-5414.085] (-5414.035) -- 0:22:54
Average standard deviation of split frequencies: 0.025517
186000 -- (-5426.275) (-5416.957) [-5406.467] (-5420.927) * (-5434.062) (-5406.064) [-5411.720] (-5406.886) -- 0:22:54
187000 -- (-5417.836) (-5422.386) [-5413.928] (-5404.620) * (-5407.524) [-5416.230] (-5420.488) (-5407.712) -- 0:22:49
188000 -- (-5416.776) (-5402.964) [-5412.713] (-5429.153) * (-5415.300) (-5415.022) (-5442.199) [-5418.610] -- 0:22:49
189000 -- (-5427.816) (-5407.907) [-5412.480] (-5424.733) * (-5424.045) (-5407.780) (-5460.297) [-5403.851] -- 0:22:48
190000 -- (-5408.055) (-5409.594) [-5401.116] (-5403.167) * [-5412.281] (-5422.015) (-5428.708) (-5402.356) -- 0:22:44
Average standard deviation of split frequencies: 0.023994
191000 -- (-5399.426) [-5425.028] (-5412.050) (-5426.695) * [-5411.016] (-5416.904) (-5431.979) (-5415.607) -- 0:22:43
192000 -- (-5404.190) (-5424.525) [-5393.223] (-5414.892) * (-5405.578) (-5415.644) [-5404.899] (-5411.995) -- 0:22:43
193000 -- (-5419.316) [-5416.079] (-5429.751) (-5407.387) * (-5443.767) [-5403.950] (-5409.613) (-5426.429) -- 0:22:38
194000 -- (-5408.315) (-5439.199) (-5410.643) [-5407.724] * (-5433.805) (-5411.340) [-5401.612] (-5410.347) -- 0:22:38
195000 -- (-5407.011) (-5419.881) [-5418.274] (-5412.575) * (-5400.903) [-5418.472] (-5413.159) (-5414.428) -- 0:22:34
Average standard deviation of split frequencies: 0.021590
196000 -- (-5401.669) (-5407.112) (-5411.572) [-5402.436] * (-5397.717) [-5406.406] (-5419.648) (-5411.868) -- 0:22:33
197000 -- (-5423.329) [-5403.749] (-5403.288) (-5413.365) * (-5411.952) (-5437.643) [-5400.837] (-5411.900) -- 0:22:33
198000 -- (-5427.400) [-5408.018] (-5418.025) (-5438.944) * (-5398.643) (-5429.313) (-5416.504) [-5403.130] -- 0:22:28
199000 -- [-5420.419] (-5416.450) (-5417.370) (-5424.998) * (-5409.835) [-5403.726] (-5446.044) (-5409.484) -- 0:22:28
200000 -- [-5406.532] (-5403.722) (-5414.766) (-5431.764) * (-5399.552) [-5398.551] (-5417.584) (-5419.696) -- 0:22:28
Average standard deviation of split frequencies: 0.019449
201000 -- [-5397.885] (-5415.643) (-5425.754) (-5418.312) * [-5409.971] (-5406.849) (-5428.723) (-5412.429) -- 0:22:23
202000 -- [-5397.855] (-5418.324) (-5419.552) (-5416.587) * (-5416.473) (-5413.255) (-5413.489) [-5399.544] -- 0:22:23
203000 -- (-5407.282) (-5425.029) [-5402.155] (-5431.284) * [-5411.980] (-5407.894) (-5410.035) (-5401.822) -- 0:22:22
204000 -- [-5406.591] (-5419.945) (-5410.308) (-5407.357) * [-5409.046] (-5424.174) (-5420.314) (-5398.513) -- 0:22:18
205000 -- (-5416.964) (-5424.213) [-5405.699] (-5420.257) * [-5417.183] (-5419.321) (-5428.655) (-5411.526) -- 0:22:17
Average standard deviation of split frequencies: 0.017683
206000 -- (-5433.941) (-5405.275) [-5412.998] (-5411.365) * (-5401.807) [-5411.735] (-5403.837) (-5410.040) -- 0:22:17
207000 -- (-5428.461) (-5409.100) (-5406.537) [-5408.851] * [-5401.180] (-5413.789) (-5426.817) (-5416.312) -- 0:22:13
208000 -- [-5400.037] (-5412.114) (-5403.559) (-5429.472) * (-5417.097) [-5402.372] (-5421.676) (-5400.653) -- 0:22:12
209000 -- (-5402.847) (-5416.618) [-5394.699] (-5428.114) * (-5423.550) [-5403.689] (-5409.286) (-5406.032) -- 0:22:12
210000 -- (-5404.553) (-5422.316) [-5416.574] (-5423.359) * (-5406.306) (-5420.591) (-5425.838) [-5401.690] -- 0:22:11
Average standard deviation of split frequencies: 0.018110
211000 -- (-5411.526) (-5416.893) (-5429.246) [-5411.951] * [-5410.747] (-5430.557) (-5410.185) (-5426.910) -- 0:22:07
212000 -- (-5399.806) [-5392.470] (-5423.174) (-5409.949) * (-5397.565) [-5401.723] (-5423.608) (-5413.522) -- 0:22:06
213000 -- [-5403.629] (-5404.633) (-5433.572) (-5405.989) * (-5425.523) [-5397.068] (-5405.410) (-5413.440) -- 0:22:06
214000 -- (-5405.603) (-5420.129) [-5395.948] (-5418.823) * (-5440.342) (-5420.278) (-5406.866) [-5403.323] -- 0:22:02
215000 -- (-5415.106) (-5419.978) (-5410.375) [-5403.067] * (-5409.006) [-5403.877] (-5411.331) (-5413.983) -- 0:22:01
Average standard deviation of split frequencies: 0.018135
216000 -- (-5412.407) (-5424.713) [-5398.012] (-5412.267) * [-5406.589] (-5417.742) (-5406.553) (-5411.996) -- 0:22:01
217000 -- (-5413.316) (-5415.127) [-5393.718] (-5413.301) * (-5409.954) (-5401.126) (-5440.339) [-5415.224] -- 0:21:57
218000 -- (-5407.508) (-5414.454) (-5420.235) [-5407.471] * (-5401.366) (-5404.007) [-5404.419] (-5442.671) -- 0:21:56
219000 -- (-5406.816) (-5418.066) [-5398.192] (-5404.178) * (-5398.866) [-5409.693] (-5411.502) (-5407.957) -- 0:21:55
220000 -- [-5416.250] (-5413.751) (-5397.511) (-5426.738) * [-5406.820] (-5412.208) (-5420.719) (-5413.666) -- 0:21:51
Average standard deviation of split frequencies: 0.017141
221000 -- (-5403.903) [-5404.055] (-5415.044) (-5442.708) * (-5407.729) [-5403.536] (-5417.885) (-5404.071) -- 0:21:51
222000 -- (-5401.751) [-5399.119] (-5417.309) (-5424.024) * (-5413.877) (-5435.524) (-5415.676) [-5398.335] -- 0:21:50
223000 -- [-5401.457] (-5422.914) (-5426.735) (-5401.709) * (-5420.405) (-5424.023) [-5404.856] (-5423.426) -- 0:21:46
224000 -- (-5430.716) (-5421.147) [-5404.370] (-5409.793) * (-5417.245) (-5414.321) [-5402.960] (-5426.781) -- 0:21:46
225000 -- (-5418.214) (-5422.037) (-5409.934) [-5399.885] * (-5424.636) (-5397.516) (-5426.726) [-5406.339] -- 0:21:45
Average standard deviation of split frequencies: 0.017432
226000 -- (-5422.683) (-5411.562) [-5404.708] (-5415.598) * (-5415.064) (-5415.468) (-5415.182) [-5413.502] -- 0:21:41
227000 -- (-5433.929) (-5405.684) [-5405.422] (-5414.655) * [-5407.664] (-5419.640) (-5412.947) (-5408.459) -- 0:21:40
228000 -- (-5416.057) [-5401.954] (-5406.199) (-5403.269) * [-5407.118] (-5402.438) (-5399.880) (-5408.424) -- 0:21:40
229000 -- (-5407.263) [-5403.907] (-5424.939) (-5419.500) * (-5433.143) (-5409.228) [-5413.271] (-5400.764) -- 0:21:39
230000 -- [-5404.123] (-5406.191) (-5412.406) (-5431.474) * (-5409.919) (-5413.471) [-5413.194] (-5407.924) -- 0:21:38
Average standard deviation of split frequencies: 0.017420
231000 -- [-5410.647] (-5420.767) (-5396.299) (-5419.557) * (-5402.784) [-5393.783] (-5411.892) (-5414.869) -- 0:21:34
232000 -- [-5407.087] (-5426.904) (-5404.047) (-5426.443) * (-5410.097) [-5409.638] (-5415.541) (-5412.275) -- 0:21:34
233000 -- (-5419.845) (-5441.450) [-5399.857] (-5393.814) * [-5407.720] (-5400.226) (-5411.067) (-5400.991) -- 0:21:33
234000 -- (-5416.820) (-5412.555) [-5401.031] (-5405.354) * (-5408.193) (-5418.631) (-5425.293) [-5404.402] -- 0:21:29
235000 -- (-5395.271) [-5392.392] (-5404.657) (-5427.079) * [-5398.160] (-5396.674) (-5425.988) (-5437.702) -- 0:21:29
Average standard deviation of split frequencies: 0.017002
236000 -- [-5407.385] (-5415.631) (-5439.882) (-5421.002) * [-5394.742] (-5403.437) (-5428.070) (-5421.482) -- 0:21:28
237000 -- (-5401.353) (-5408.157) [-5407.040] (-5420.210) * [-5411.491] (-5413.410) (-5415.171) (-5416.346) -- 0:21:24
238000 -- (-5423.002) (-5418.228) [-5403.626] (-5425.455) * (-5405.702) (-5416.043) (-5431.728) [-5395.296] -- 0:21:23
239000 -- (-5418.878) [-5410.607] (-5399.090) (-5428.945) * (-5401.920) (-5403.834) (-5412.457) [-5407.089] -- 0:21:23
240000 -- (-5424.113) (-5416.185) [-5406.681] (-5420.673) * [-5406.068] (-5415.241) (-5419.506) (-5416.747) -- 0:21:19
Average standard deviation of split frequencies: 0.016763
241000 -- (-5414.533) (-5405.453) [-5404.145] (-5415.495) * [-5401.674] (-5415.286) (-5435.866) (-5436.543) -- 0:21:18
242000 -- (-5409.975) [-5406.805] (-5415.417) (-5410.219) * (-5417.095) (-5412.946) [-5423.528] (-5410.448) -- 0:21:17
243000 -- (-5429.094) (-5400.222) (-5404.687) [-5405.914] * (-5415.929) [-5400.659] (-5405.370) (-5415.285) -- 0:21:14
244000 -- (-5444.237) (-5418.257) (-5409.375) [-5416.615] * (-5416.550) [-5396.767] (-5419.956) (-5412.246) -- 0:21:13
245000 -- [-5419.655] (-5418.071) (-5419.753) (-5431.440) * (-5402.562) [-5405.680] (-5417.273) (-5413.782) -- 0:21:12
Average standard deviation of split frequencies: 0.016132
246000 -- (-5412.861) [-5423.348] (-5404.065) (-5434.628) * (-5427.571) [-5399.209] (-5421.553) (-5411.358) -- 0:21:08
247000 -- (-5429.079) (-5403.360) [-5398.181] (-5411.192) * (-5405.839) [-5403.158] (-5403.401) (-5424.862) -- 0:21:08
248000 -- (-5424.917) (-5403.313) [-5399.789] (-5405.195) * [-5414.892] (-5408.070) (-5405.387) (-5400.220) -- 0:21:07
249000 -- (-5410.306) [-5410.157] (-5415.567) (-5404.992) * [-5405.475] (-5430.069) (-5412.874) (-5417.905) -- 0:21:06
250000 -- [-5403.016] (-5416.487) (-5409.152) (-5429.826) * (-5415.942) (-5436.553) (-5417.630) [-5407.040] -- 0:21:03
Average standard deviation of split frequencies: 0.015900
251000 -- (-5418.011) (-5404.614) (-5428.039) [-5404.170] * [-5406.776] (-5431.492) (-5413.358) (-5394.318) -- 0:21:02
252000 -- [-5402.374] (-5435.081) (-5426.940) (-5417.662) * (-5407.983) [-5411.921] (-5419.773) (-5402.711) -- 0:20:58
253000 -- [-5400.728] (-5408.730) (-5420.302) (-5416.071) * (-5412.392) [-5415.111] (-5415.501) (-5412.705) -- 0:20:57
254000 -- (-5425.413) (-5406.052) [-5411.645] (-5395.391) * [-5401.898] (-5431.649) (-5417.213) (-5396.750) -- 0:20:57
255000 -- (-5439.135) (-5417.442) [-5417.428] (-5397.571) * (-5409.208) (-5414.853) (-5417.179) [-5403.042] -- 0:20:56
Average standard deviation of split frequencies: 0.016364
256000 -- (-5423.824) (-5414.206) (-5424.009) [-5398.399] * (-5414.034) [-5412.846] (-5431.159) (-5425.920) -- 0:20:55
257000 -- [-5408.734] (-5409.148) (-5426.783) (-5418.244) * [-5392.501] (-5423.530) (-5414.682) (-5428.385) -- 0:20:51
258000 -- [-5398.957] (-5428.313) (-5415.217) (-5414.807) * [-5412.433] (-5418.672) (-5412.168) (-5430.599) -- 0:20:51
259000 -- (-5422.157) [-5416.808] (-5414.206) (-5415.915) * [-5404.265] (-5407.072) (-5434.014) (-5444.356) -- 0:20:50
260000 -- [-5414.122] (-5416.366) (-5409.158) (-5411.244) * (-5400.075) (-5434.437) [-5401.207] (-5432.523) -- 0:20:49
Average standard deviation of split frequencies: 0.015309
261000 -- (-5408.327) (-5401.779) [-5409.852] (-5428.540) * (-5418.653) [-5399.343] (-5411.493) (-5423.639) -- 0:20:45
262000 -- (-5402.241) (-5430.596) (-5400.988) [-5393.294] * (-5413.047) [-5401.223] (-5413.606) (-5406.873) -- 0:20:45
263000 -- [-5403.784] (-5426.507) (-5420.853) (-5397.434) * (-5404.492) (-5413.533) [-5423.023] (-5405.194) -- 0:20:44
264000 -- (-5401.584) (-5412.562) (-5410.945) [-5395.175] * [-5407.709] (-5412.037) (-5420.983) (-5409.339) -- 0:20:40
265000 -- (-5418.550) (-5417.740) (-5419.278) [-5400.353] * [-5415.834] (-5412.709) (-5406.199) (-5416.896) -- 0:20:39
Average standard deviation of split frequencies: 0.014713
266000 -- (-5414.641) (-5407.482) [-5399.682] (-5398.314) * [-5405.704] (-5417.650) (-5448.684) (-5414.834) -- 0:20:38
267000 -- (-5398.385) (-5411.245) [-5425.618] (-5419.807) * [-5407.221] (-5426.422) (-5414.305) (-5407.573) -- 0:20:35
268000 -- (-5417.592) (-5404.525) (-5418.878) [-5415.726] * [-5415.000] (-5438.746) (-5405.970) (-5422.717) -- 0:20:34
269000 -- (-5400.206) (-5424.885) (-5422.038) [-5404.734] * (-5415.810) (-5415.625) [-5414.107] (-5407.296) -- 0:20:33
270000 -- (-5406.216) [-5420.833] (-5427.180) (-5405.540) * [-5409.652] (-5409.021) (-5431.942) (-5413.410) -- 0:20:32
Average standard deviation of split frequencies: 0.015260
271000 -- (-5412.162) (-5403.999) [-5415.379] (-5409.617) * [-5397.043] (-5421.076) (-5412.347) (-5415.784) -- 0:20:32
272000 -- (-5416.100) [-5413.273] (-5436.257) (-5418.661) * [-5407.432] (-5415.698) (-5414.311) (-5417.744) -- 0:20:28
273000 -- (-5423.567) [-5399.280] (-5423.146) (-5423.227) * (-5409.046) [-5407.563] (-5407.589) (-5411.846) -- 0:20:27
274000 -- (-5423.060) (-5412.492) [-5415.308] (-5408.707) * (-5413.009) [-5411.676] (-5410.958) (-5422.082) -- 0:20:26
275000 -- [-5401.805] (-5421.144) (-5419.389) (-5429.271) * [-5399.190] (-5407.752) (-5411.744) (-5443.546) -- 0:20:25
Average standard deviation of split frequencies: 0.015413
276000 -- (-5408.206) (-5420.190) (-5399.791) [-5402.334] * [-5403.946] (-5429.958) (-5417.756) (-5411.346) -- 0:20:22
277000 -- (-5410.023) (-5423.687) (-5418.335) [-5413.447] * (-5398.017) (-5416.451) [-5409.714] (-5427.836) -- 0:20:21
278000 -- (-5422.984) (-5411.539) (-5422.137) [-5395.650] * [-5399.727] (-5425.038) (-5409.151) (-5435.125) -- 0:20:20
279000 -- (-5418.899) (-5407.378) (-5422.902) [-5414.148] * (-5401.151) [-5414.278] (-5416.298) (-5440.631) -- 0:20:17
280000 -- (-5425.289) [-5408.081] (-5414.162) (-5412.107) * [-5414.817] (-5413.945) (-5426.760) (-5422.082) -- 0:20:16
Average standard deviation of split frequencies: 0.015476
281000 -- (-5405.597) (-5421.358) [-5391.147] (-5413.851) * [-5396.902] (-5437.188) (-5432.556) (-5412.576) -- 0:20:15
282000 -- (-5416.155) (-5401.004) [-5395.730] (-5418.877) * [-5404.368] (-5439.456) (-5415.236) (-5415.221) -- 0:20:11
283000 -- (-5405.740) (-5405.214) [-5400.975] (-5410.573) * (-5396.183) (-5417.934) (-5405.343) [-5413.791] -- 0:20:11
284000 -- (-5415.503) (-5424.622) [-5406.869] (-5430.921) * (-5404.467) (-5402.455) (-5439.348) [-5399.661] -- 0:20:10
285000 -- (-5411.757) [-5403.396] (-5419.442) (-5418.086) * [-5406.454] (-5411.374) (-5425.552) (-5426.148) -- 0:20:09
Average standard deviation of split frequencies: 0.015371
286000 -- (-5419.108) (-5419.689) (-5406.834) [-5403.434] * (-5402.945) (-5429.923) [-5403.282] (-5401.452) -- 0:20:08
287000 -- (-5432.462) (-5420.632) (-5411.347) [-5405.335] * (-5415.974) (-5419.698) (-5418.343) [-5390.800] -- 0:20:04
288000 -- [-5408.600] (-5414.538) (-5409.735) (-5407.625) * (-5410.379) (-5397.914) (-5432.725) [-5405.078] -- 0:20:03
289000 -- [-5414.029] (-5414.719) (-5424.337) (-5402.945) * [-5407.340] (-5423.717) (-5422.420) (-5422.495) -- 0:20:03
290000 -- (-5421.313) [-5413.253] (-5419.590) (-5411.413) * [-5403.904] (-5413.340) (-5408.316) (-5422.333) -- 0:19:59
Average standard deviation of split frequencies: 0.015098
291000 -- (-5419.185) (-5421.011) (-5401.244) [-5413.213] * (-5415.749) (-5415.623) [-5398.197] (-5401.264) -- 0:19:58
292000 -- (-5422.797) [-5398.903] (-5396.056) (-5408.889) * (-5411.848) (-5414.964) [-5403.143] (-5421.199) -- 0:19:57
293000 -- (-5423.658) (-5420.551) (-5411.946) [-5406.244] * (-5414.554) [-5401.867] (-5413.077) (-5412.605) -- 0:19:54
294000 -- (-5426.173) (-5400.990) (-5417.830) [-5404.797] * (-5428.698) [-5399.834] (-5403.124) (-5429.857) -- 0:19:53
295000 -- (-5397.668) (-5407.817) [-5403.747] (-5405.743) * (-5425.890) (-5403.702) (-5408.555) [-5408.050] -- 0:19:52
Average standard deviation of split frequencies: 0.015741
296000 -- (-5409.508) [-5407.442] (-5421.798) (-5416.228) * (-5414.382) (-5414.913) (-5416.694) [-5398.297] -- 0:19:49
297000 -- [-5396.602] (-5402.388) (-5412.860) (-5421.872) * [-5403.409] (-5408.045) (-5422.950) (-5401.731) -- 0:19:48
298000 -- (-5413.950) [-5399.321] (-5411.782) (-5413.569) * [-5398.379] (-5410.569) (-5421.098) (-5402.564) -- 0:19:47
299000 -- (-5418.194) (-5417.977) [-5405.646] (-5433.138) * [-5397.704] (-5416.538) (-5412.407) (-5419.015) -- 0:19:43
300000 -- (-5422.631) (-5403.051) [-5394.390] (-5420.585) * (-5396.743) (-5412.515) [-5416.260] (-5416.727) -- 0:19:43
Average standard deviation of split frequencies: 0.015278
301000 -- (-5412.199) [-5414.375] (-5410.386) (-5414.191) * (-5412.353) (-5425.411) (-5404.843) [-5396.001] -- 0:19:42
302000 -- (-5408.337) (-5406.275) (-5412.736) [-5402.911] * (-5423.426) (-5400.099) (-5428.521) [-5418.221] -- 0:19:38
303000 -- (-5394.784) (-5415.024) (-5405.367) [-5406.261] * (-5416.589) [-5396.739] (-5412.595) (-5420.521) -- 0:19:37
304000 -- (-5413.891) (-5418.575) [-5398.924] (-5422.148) * (-5409.984) [-5407.603] (-5416.921) (-5419.123) -- 0:19:36
305000 -- (-5430.578) [-5403.619] (-5403.924) (-5419.734) * (-5412.129) [-5410.338] (-5423.571) (-5411.853) -- 0:19:35
Average standard deviation of split frequencies: 0.016874
306000 -- (-5422.484) (-5406.721) [-5406.874] (-5415.581) * (-5417.172) (-5409.961) (-5424.820) [-5416.509] -- 0:19:32
307000 -- (-5424.977) [-5412.578] (-5399.958) (-5397.712) * (-5414.220) (-5430.723) [-5402.767] (-5407.580) -- 0:19:31
308000 -- (-5435.042) (-5415.542) (-5415.409) [-5405.752] * (-5424.539) (-5420.674) [-5407.986] (-5400.032) -- 0:19:30
309000 -- [-5411.299] (-5399.265) (-5408.609) (-5432.758) * (-5421.324) (-5415.078) (-5405.711) [-5416.688] -- 0:19:27
310000 -- (-5415.351) [-5400.580] (-5403.484) (-5414.821) * [-5401.597] (-5400.978) (-5423.456) (-5420.812) -- 0:19:26
Average standard deviation of split frequencies: 0.015809
311000 -- [-5409.980] (-5410.385) (-5426.047) (-5409.751) * (-5411.466) [-5402.335] (-5424.574) (-5416.056) -- 0:19:25
312000 -- (-5420.587) [-5405.001] (-5402.382) (-5415.240) * (-5407.218) [-5406.558] (-5405.189) (-5419.233) -- 0:19:22
313000 -- (-5409.003) (-5401.853) (-5415.742) [-5398.650] * [-5415.878] (-5409.360) (-5410.508) (-5421.156) -- 0:19:21
314000 -- (-5415.836) [-5398.130] (-5416.603) (-5402.999) * [-5411.524] (-5399.995) (-5416.177) (-5421.357) -- 0:19:20
315000 -- (-5413.902) (-5414.080) (-5417.600) [-5397.601] * (-5421.370) (-5419.764) (-5411.491) [-5390.462] -- 0:19:16
Average standard deviation of split frequencies: 0.015438
316000 -- (-5402.690) (-5408.617) (-5423.561) [-5407.720] * (-5417.663) (-5431.307) (-5403.479) [-5394.595] -- 0:19:15
317000 -- [-5394.222] (-5418.039) (-5427.859) (-5420.745) * (-5402.862) (-5417.148) (-5405.463) [-5403.645] -- 0:19:14
318000 -- [-5407.765] (-5415.472) (-5455.649) (-5411.953) * [-5396.600] (-5423.823) (-5402.689) (-5438.740) -- 0:19:13
319000 -- (-5402.891) [-5399.658] (-5417.382) (-5411.083) * (-5415.651) (-5434.574) (-5426.468) [-5403.510] -- 0:19:10
320000 -- (-5398.088) (-5401.460) [-5401.654] (-5423.293) * (-5437.589) (-5422.193) [-5411.240] (-5423.551) -- 0:19:09
Average standard deviation of split frequencies: 0.015145
321000 -- (-5427.482) [-5396.995] (-5415.954) (-5405.022) * (-5412.972) (-5410.377) (-5408.016) [-5414.486] -- 0:19:08
322000 -- (-5424.975) [-5396.884] (-5414.728) (-5391.112) * (-5419.793) (-5412.259) [-5409.876] (-5411.443) -- 0:19:05
323000 -- (-5413.700) [-5402.152] (-5408.900) (-5414.146) * (-5430.459) (-5412.969) (-5410.168) [-5398.183] -- 0:19:04
324000 -- [-5402.002] (-5425.423) (-5420.045) (-5431.460) * (-5424.151) (-5411.370) [-5406.438] (-5408.306) -- 0:19:03
325000 -- (-5410.519) [-5413.529] (-5393.464) (-5419.348) * (-5416.680) (-5421.075) [-5407.340] (-5412.424) -- 0:19:02
Average standard deviation of split frequencies: 0.014662
326000 -- (-5411.791) (-5434.744) (-5417.770) [-5402.865] * (-5410.503) [-5414.704] (-5391.709) (-5409.045) -- 0:19:01
327000 -- (-5427.039) (-5414.431) [-5397.317] (-5394.397) * (-5410.816) (-5403.131) [-5415.530] (-5398.902) -- 0:18:58
328000 -- (-5423.923) (-5411.935) [-5400.049] (-5419.433) * (-5411.105) (-5404.306) (-5413.769) [-5402.908] -- 0:18:57
329000 -- [-5404.271] (-5421.946) (-5431.283) (-5401.324) * (-5404.494) (-5406.491) (-5407.263) [-5406.502] -- 0:18:56
330000 -- (-5416.287) [-5401.134] (-5426.201) (-5415.854) * (-5406.151) (-5405.920) [-5414.659] (-5432.789) -- 0:18:54
Average standard deviation of split frequencies: 0.012864
331000 -- (-5427.045) [-5404.362] (-5410.971) (-5402.715) * (-5414.854) (-5406.891) [-5407.743] (-5415.747) -- 0:18:51
332000 -- (-5412.180) (-5416.790) [-5406.074] (-5419.537) * (-5402.209) (-5411.652) (-5419.606) [-5406.233] -- 0:18:50
333000 -- (-5426.525) (-5408.332) (-5408.931) [-5406.222] * [-5405.225] (-5419.558) (-5406.298) (-5416.899) -- 0:18:49
334000 -- (-5429.396) (-5417.529) [-5407.582] (-5434.359) * [-5402.716] (-5417.977) (-5407.288) (-5404.593) -- 0:18:48
335000 -- [-5416.459] (-5395.513) (-5422.725) (-5424.065) * (-5405.091) (-5419.176) (-5397.129) [-5405.241] -- 0:18:45
Average standard deviation of split frequencies: 0.011725
336000 -- (-5400.686) [-5407.597] (-5420.812) (-5412.796) * (-5420.836) (-5418.397) [-5403.078] (-5404.897) -- 0:18:44
337000 -- (-5408.329) (-5415.202) [-5410.569] (-5413.289) * (-5423.707) (-5412.893) (-5408.881) [-5407.412] -- 0:18:43
338000 -- [-5398.449] (-5406.545) (-5415.319) (-5403.592) * (-5435.373) [-5401.692] (-5414.217) (-5418.482) -- 0:18:40
339000 -- (-5420.812) [-5413.750] (-5432.948) (-5425.523) * (-5414.968) (-5412.815) [-5405.296] (-5410.287) -- 0:18:39
340000 -- (-5423.298) (-5418.247) (-5405.804) [-5413.769] * [-5409.180] (-5414.740) (-5414.540) (-5412.944) -- 0:18:38
Average standard deviation of split frequencies: 0.011617
341000 -- (-5415.123) (-5401.511) (-5417.232) [-5402.193] * (-5415.482) [-5403.454] (-5406.672) (-5414.983) -- 0:18:37
342000 -- (-5408.945) (-5415.920) (-5437.580) [-5407.031] * [-5414.858] (-5413.163) (-5414.701) (-5419.549) -- 0:18:33
343000 -- [-5413.450] (-5410.833) (-5420.143) (-5427.267) * [-5406.512] (-5407.662) (-5430.088) (-5411.705) -- 0:18:32
344000 -- (-5413.560) [-5407.138] (-5425.343) (-5415.432) * [-5413.141] (-5420.524) (-5404.775) (-5411.397) -- 0:18:31
345000 -- (-5389.887) (-5409.936) [-5401.414] (-5408.080) * (-5401.316) [-5409.225] (-5405.419) (-5432.136) -- 0:18:30
Average standard deviation of split frequencies: 0.011787
346000 -- [-5393.965] (-5421.796) (-5417.692) (-5399.143) * (-5420.979) (-5397.418) [-5398.284] (-5427.594) -- 0:18:27
347000 -- (-5411.162) (-5439.086) (-5414.439) [-5404.751] * (-5420.673) (-5403.796) [-5394.491] (-5409.675) -- 0:18:26
348000 -- (-5413.031) (-5417.779) (-5432.039) [-5407.734] * [-5391.574] (-5413.141) (-5408.565) (-5397.295) -- 0:18:25
349000 -- (-5392.457) (-5407.585) [-5424.768] (-5412.860) * [-5402.301] (-5423.138) (-5409.817) (-5417.910) -- 0:18:22
350000 -- [-5403.941] (-5424.721) (-5412.694) (-5407.323) * (-5417.542) (-5424.137) [-5400.768] (-5414.573) -- 0:18:21
Average standard deviation of split frequencies: 0.012224
351000 -- (-5411.036) (-5413.972) (-5405.654) [-5401.073] * (-5425.920) [-5407.082] (-5407.190) (-5407.760) -- 0:18:20
352000 -- [-5404.369] (-5407.944) (-5405.877) (-5424.703) * (-5413.472) [-5401.920] (-5426.405) (-5412.850) -- 0:18:17
353000 -- [-5399.778] (-5403.836) (-5421.925) (-5402.118) * (-5405.364) [-5401.374] (-5432.659) (-5413.845) -- 0:18:16
354000 -- (-5420.510) [-5384.244] (-5413.534) (-5412.060) * (-5419.316) (-5416.710) (-5420.612) [-5408.607] -- 0:18:13
355000 -- (-5429.705) [-5402.734] (-5416.804) (-5400.383) * (-5417.873) (-5420.393) (-5413.986) [-5411.267] -- 0:18:11
Average standard deviation of split frequencies: 0.013611
356000 -- (-5416.727) (-5399.463) [-5391.013] (-5405.109) * (-5414.412) (-5420.761) (-5390.698) [-5407.228] -- 0:18:10
357000 -- (-5437.876) [-5406.842] (-5411.601) (-5431.430) * (-5400.966) (-5421.928) (-5410.946) [-5396.810] -- 0:18:09
358000 -- [-5413.515] (-5410.215) (-5414.158) (-5431.615) * (-5400.303) (-5427.169) (-5417.858) [-5406.079] -- 0:18:06
359000 -- [-5398.160] (-5414.781) (-5411.685) (-5412.533) * (-5413.277) (-5409.887) (-5416.218) [-5408.245] -- 0:18:05
360000 -- [-5402.879] (-5415.151) (-5427.875) (-5400.437) * (-5431.632) (-5403.479) [-5416.545] (-5410.605) -- 0:18:04
Average standard deviation of split frequencies: 0.014347
361000 -- (-5397.277) (-5420.850) [-5418.402] (-5411.403) * [-5385.778] (-5411.592) (-5417.826) (-5426.166) -- 0:18:01
362000 -- (-5411.031) [-5399.253] (-5417.585) (-5417.174) * (-5401.501) [-5402.723] (-5423.548) (-5416.096) -- 0:18:00
363000 -- (-5402.975) (-5421.482) (-5433.722) [-5408.490] * (-5402.407) [-5400.018] (-5421.842) (-5410.869) -- 0:17:59
364000 -- [-5402.130] (-5424.695) (-5415.991) (-5418.499) * (-5411.448) (-5432.803) (-5417.599) [-5410.376] -- 0:17:56
365000 -- (-5415.294) [-5407.482] (-5423.931) (-5423.774) * (-5406.970) (-5422.053) (-5422.419) [-5401.866] -- 0:17:55
Average standard deviation of split frequencies: 0.015096
366000 -- (-5415.080) [-5383.511] (-5421.226) (-5402.114) * (-5410.613) (-5423.659) (-5419.292) [-5397.608] -- 0:17:53
367000 -- [-5408.798] (-5398.329) (-5410.838) (-5419.201) * (-5393.998) (-5435.154) [-5390.494] (-5415.842) -- 0:17:52
368000 -- (-5405.965) (-5412.221) [-5413.537] (-5423.600) * (-5401.134) (-5411.611) (-5404.088) [-5413.170] -- 0:17:49
369000 -- [-5398.876] (-5410.059) (-5418.438) (-5421.838) * (-5400.797) (-5418.636) [-5404.309] (-5427.639) -- 0:17:48
370000 -- [-5412.527] (-5411.805) (-5449.441) (-5404.166) * (-5403.833) (-5415.602) [-5391.938] (-5411.397) -- 0:17:47
Average standard deviation of split frequencies: 0.014049
371000 -- (-5411.584) (-5399.153) (-5420.204) [-5409.989] * (-5415.334) (-5411.850) [-5412.335] (-5422.903) -- 0:17:44
372000 -- (-5432.459) (-5405.942) (-5418.813) [-5399.318] * (-5399.478) (-5399.274) [-5403.543] (-5415.306) -- 0:17:43
373000 -- (-5425.607) [-5395.231] (-5407.752) (-5417.362) * (-5408.762) [-5392.471] (-5396.324) (-5414.367) -- 0:17:42
374000 -- (-5430.612) [-5404.062] (-5417.531) (-5417.204) * [-5403.147] (-5419.617) (-5402.718) (-5408.111) -- 0:17:41
375000 -- (-5431.542) (-5401.074) (-5408.055) [-5406.269] * (-5424.512) [-5399.352] (-5401.499) (-5406.202) -- 0:17:38
Average standard deviation of split frequencies: 0.012916
376000 -- [-5410.384] (-5414.048) (-5406.448) (-5414.047) * (-5411.730) (-5421.162) (-5399.546) [-5401.208] -- 0:17:37
377000 -- (-5406.685) [-5401.095] (-5405.627) (-5421.696) * [-5405.913] (-5402.351) (-5408.807) (-5409.440) -- 0:17:35
378000 -- (-5439.050) (-5409.074) [-5402.656] (-5420.614) * (-5399.856) (-5409.596) (-5422.034) [-5414.833] -- 0:17:33
379000 -- (-5412.618) [-5392.158] (-5416.751) (-5428.218) * (-5430.470) [-5404.845] (-5409.710) (-5411.862) -- 0:17:31
380000 -- (-5405.766) (-5419.024) [-5398.224] (-5408.646) * (-5434.203) [-5396.982] (-5391.406) (-5417.473) -- 0:17:30
Average standard deviation of split frequencies: 0.013305
381000 -- (-5428.275) [-5410.449] (-5431.223) (-5403.179) * (-5433.876) (-5403.248) [-5402.624] (-5416.547) -- 0:17:27
382000 -- (-5395.729) (-5426.629) (-5437.975) [-5406.624] * (-5421.024) (-5409.944) (-5435.086) [-5394.691] -- 0:17:26
383000 -- [-5394.790] (-5419.615) (-5412.968) (-5426.294) * [-5393.402] (-5417.351) (-5428.554) (-5403.363) -- 0:17:25
384000 -- [-5410.583] (-5410.119) (-5425.888) (-5412.906) * (-5400.299) [-5410.371] (-5418.550) (-5423.011) -- 0:17:22
385000 -- (-5419.247) (-5425.316) (-5413.930) [-5402.522] * [-5404.138] (-5415.863) (-5411.309) (-5409.510) -- 0:17:21
Average standard deviation of split frequencies: 0.012411
386000 -- (-5425.186) (-5423.621) [-5402.434] (-5423.157) * (-5409.206) [-5410.500] (-5420.960) (-5413.317) -- 0:17:20
387000 -- (-5393.882) [-5403.955] (-5421.307) (-5425.822) * [-5414.637] (-5414.635) (-5426.168) (-5409.326) -- 0:17:19
388000 -- (-5396.576) [-5400.884] (-5397.496) (-5412.198) * (-5414.834) (-5420.707) (-5423.966) [-5401.495] -- 0:17:16
389000 -- (-5417.681) (-5400.510) [-5401.280] (-5427.437) * (-5420.046) (-5441.361) [-5415.416] (-5409.352) -- 0:17:15
390000 -- (-5413.710) (-5439.420) [-5403.040] (-5424.055) * (-5407.785) (-5422.130) (-5416.664) [-5398.242] -- 0:17:13
Average standard deviation of split frequencies: 0.011982
391000 -- (-5422.681) [-5403.729] (-5413.268) (-5404.749) * (-5412.655) (-5420.288) [-5409.288] (-5436.452) -- 0:17:11
392000 -- (-5425.865) [-5398.019] (-5430.208) (-5404.222) * [-5408.699] (-5428.177) (-5405.379) (-5414.072) -- 0:17:09
393000 -- (-5412.708) [-5397.207] (-5407.561) (-5401.774) * (-5425.917) (-5409.327) (-5404.795) [-5411.148] -- 0:17:08
394000 -- (-5413.647) (-5402.951) [-5395.077] (-5404.617) * (-5407.605) [-5404.638] (-5397.331) (-5413.851) -- 0:17:05
395000 -- (-5394.182) [-5402.923] (-5404.703) (-5418.060) * [-5402.960] (-5425.344) (-5405.225) (-5409.255) -- 0:17:04
Average standard deviation of split frequencies: 0.011627
396000 -- (-5402.238) [-5410.638] (-5415.702) (-5430.372) * (-5409.404) (-5412.732) [-5406.679] (-5391.805) -- 0:17:03
397000 -- (-5395.751) [-5401.550] (-5407.262) (-5421.187) * (-5402.912) (-5422.657) (-5402.307) [-5408.125] -- 0:17:02
398000 -- [-5391.417] (-5404.314) (-5420.165) (-5406.712) * (-5400.829) (-5430.474) [-5406.547] (-5422.845) -- 0:16:59
399000 -- [-5395.123] (-5416.231) (-5421.462) (-5399.961) * (-5399.883) (-5426.681) [-5400.791] (-5402.107) -- 0:16:58
400000 -- [-5405.558] (-5408.173) (-5425.503) (-5409.309) * [-5409.192] (-5423.532) (-5426.316) (-5400.191) -- 0:16:56
Average standard deviation of split frequencies: 0.011191
401000 -- (-5402.942) (-5401.267) (-5432.930) [-5397.081] * (-5410.194) (-5407.453) [-5403.027] (-5435.083) -- 0:16:54
402000 -- (-5424.371) (-5399.480) (-5401.807) [-5387.766] * [-5405.588] (-5407.171) (-5419.475) (-5418.946) -- 0:16:53
403000 -- [-5406.518] (-5401.038) (-5418.801) (-5424.211) * (-5421.349) (-5434.974) (-5410.082) [-5395.133] -- 0:16:51
404000 -- (-5411.562) [-5406.080] (-5409.716) (-5412.510) * (-5430.514) (-5413.240) [-5416.703] (-5410.672) -- 0:16:49
405000 -- (-5408.278) [-5413.238] (-5407.142) (-5416.218) * [-5417.659] (-5417.076) (-5420.282) (-5424.292) -- 0:16:47
Average standard deviation of split frequencies: 0.010477
406000 -- [-5404.228] (-5396.798) (-5404.012) (-5423.083) * (-5427.907) (-5416.149) (-5417.209) [-5411.670] -- 0:16:46
407000 -- [-5407.393] (-5422.265) (-5413.877) (-5434.690) * [-5421.118] (-5404.976) (-5417.550) (-5435.929) -- 0:16:43
408000 -- (-5421.139) [-5407.109] (-5425.438) (-5405.593) * (-5421.450) (-5399.474) [-5411.602] (-5422.417) -- 0:16:42
409000 -- (-5407.005) (-5400.641) (-5422.853) [-5410.451] * (-5406.319) (-5414.443) (-5397.442) [-5404.107] -- 0:16:41
410000 -- (-5408.310) [-5391.291] (-5418.408) (-5430.227) * [-5394.144] (-5428.043) (-5403.837) (-5413.461) -- 0:16:38
Average standard deviation of split frequencies: 0.010224
411000 -- (-5407.183) (-5413.896) (-5429.462) [-5422.144] * [-5393.755] (-5421.333) (-5413.993) (-5413.958) -- 0:16:37
412000 -- (-5394.839) (-5416.279) (-5417.066) [-5402.063] * (-5415.942) [-5406.953] (-5411.879) (-5402.831) -- 0:16:36
413000 -- [-5403.462] (-5417.314) (-5407.445) (-5403.664) * [-5400.594] (-5414.261) (-5419.398) (-5434.013) -- 0:16:33
414000 -- (-5412.156) (-5410.886) (-5405.510) [-5408.288] * [-5398.329] (-5410.028) (-5416.565) (-5427.742) -- 0:16:32
415000 -- (-5418.973) (-5433.280) (-5410.890) [-5411.158] * [-5394.842] (-5411.722) (-5413.937) (-5409.178) -- 0:16:30
Average standard deviation of split frequencies: 0.009935
416000 -- (-5416.091) (-5427.396) [-5418.182] (-5413.194) * (-5415.734) (-5416.450) (-5414.879) [-5398.231] -- 0:16:28
417000 -- [-5408.909] (-5415.954) (-5407.455) (-5404.511) * (-5409.311) (-5413.321) [-5411.252] (-5413.763) -- 0:16:27
418000 -- (-5432.742) [-5397.675] (-5395.328) (-5435.352) * (-5415.989) [-5406.927] (-5412.628) (-5417.557) -- 0:16:25
419000 -- (-5407.125) [-5398.904] (-5410.117) (-5427.207) * (-5428.512) [-5404.743] (-5398.876) (-5405.081) -- 0:16:23
420000 -- (-5438.892) [-5407.007] (-5394.563) (-5416.700) * (-5409.588) [-5402.902] (-5418.388) (-5414.473) -- 0:16:21
Average standard deviation of split frequencies: 0.009304
421000 -- (-5439.047) (-5422.190) [-5390.577] (-5410.500) * (-5417.290) [-5401.500] (-5419.967) (-5423.603) -- 0:16:20
422000 -- (-5423.598) [-5402.708] (-5412.309) (-5400.639) * [-5408.662] (-5422.410) (-5411.250) (-5420.309) -- 0:16:17
423000 -- (-5435.970) [-5402.617] (-5418.765) (-5430.431) * (-5417.119) [-5402.870] (-5403.326) (-5408.810) -- 0:16:16
424000 -- (-5419.422) [-5405.280] (-5416.681) (-5416.129) * (-5428.324) [-5404.675] (-5406.846) (-5422.427) -- 0:16:15
425000 -- (-5423.988) [-5409.715] (-5408.106) (-5419.796) * (-5405.143) [-5402.837] (-5407.986) (-5390.641) -- 0:16:14
Average standard deviation of split frequencies: 0.008724
426000 -- (-5417.326) (-5425.787) (-5404.267) [-5406.156] * (-5432.334) (-5407.854) (-5417.926) [-5399.824] -- 0:16:11
427000 -- (-5414.434) (-5415.831) [-5408.112] (-5429.042) * (-5437.940) (-5393.613) (-5412.505) [-5395.992] -- 0:16:10
428000 -- (-5423.029) [-5409.247] (-5400.634) (-5422.455) * (-5416.250) (-5411.959) [-5408.799] (-5403.159) -- 0:16:08
429000 -- (-5418.984) (-5433.111) (-5419.936) [-5404.553] * (-5427.346) (-5420.172) [-5401.734] (-5407.170) -- 0:16:07
430000 -- (-5406.236) (-5434.200) (-5407.682) [-5402.003] * (-5422.516) (-5424.748) (-5411.336) [-5416.086] -- 0:16:05
Average standard deviation of split frequencies: 0.009088
431000 -- [-5409.134] (-5403.885) (-5416.868) (-5429.280) * (-5418.504) (-5425.179) [-5410.514] (-5399.087) -- 0:16:03
432000 -- (-5413.874) (-5409.239) [-5399.254] (-5442.372) * (-5432.169) (-5404.394) (-5404.093) [-5406.858] -- 0:16:02
433000 -- (-5418.124) (-5405.564) [-5425.742] (-5422.985) * (-5439.527) (-5401.497) (-5431.138) [-5409.863] -- 0:15:59
434000 -- (-5404.288) (-5414.666) [-5414.912] (-5424.307) * (-5427.132) [-5402.911] (-5430.472) (-5405.293) -- 0:15:58
435000 -- (-5411.551) (-5432.779) [-5408.054] (-5423.898) * (-5420.694) [-5405.444] (-5420.989) (-5403.993) -- 0:15:57
Average standard deviation of split frequencies: 0.009806
436000 -- [-5409.407] (-5420.357) (-5416.644) (-5420.878) * (-5411.722) (-5428.220) (-5398.771) [-5397.301] -- 0:15:55
437000 -- [-5413.366] (-5415.860) (-5425.734) (-5401.399) * (-5401.277) (-5420.450) [-5398.863] (-5406.539) -- 0:15:53
438000 -- (-5420.083) (-5419.913) (-5436.840) [-5402.445] * (-5412.660) [-5417.413] (-5404.247) (-5412.079) -- 0:15:52
439000 -- [-5418.873] (-5415.520) (-5431.632) (-5396.601) * [-5400.166] (-5421.017) (-5414.496) (-5413.698) -- 0:15:50
440000 -- (-5403.594) (-5414.147) (-5434.680) [-5402.990] * [-5397.306] (-5405.870) (-5415.056) (-5418.399) -- 0:15:48
Average standard deviation of split frequencies: 0.010299
441000 -- (-5407.997) [-5406.394] (-5426.701) (-5414.292) * (-5415.611) [-5404.519] (-5412.992) (-5407.556) -- 0:15:46
442000 -- (-5417.293) [-5407.711] (-5418.497) (-5411.836) * (-5429.494) (-5417.844) (-5415.058) [-5406.114] -- 0:15:45
443000 -- [-5400.822] (-5412.061) (-5416.491) (-5412.276) * (-5407.853) [-5403.782] (-5413.289) (-5401.412) -- 0:15:43
444000 -- (-5418.867) [-5399.313] (-5433.052) (-5413.718) * (-5407.619) [-5411.105] (-5400.963) (-5407.255) -- 0:15:41
445000 -- (-5420.330) [-5395.813] (-5404.289) (-5409.199) * [-5404.187] (-5398.337) (-5408.285) (-5414.578) -- 0:15:40
Average standard deviation of split frequencies: 0.010250
446000 -- [-5400.549] (-5421.204) (-5421.710) (-5409.416) * (-5429.861) (-5412.939) [-5391.225] (-5405.671) -- 0:15:39
447000 -- [-5406.466] (-5393.261) (-5426.144) (-5412.850) * (-5393.715) (-5418.336) [-5396.940] (-5425.227) -- 0:15:36
448000 -- (-5421.659) (-5395.678) [-5399.924] (-5413.585) * (-5409.735) (-5434.417) [-5395.468] (-5416.170) -- 0:15:35
449000 -- [-5406.393] (-5403.461) (-5397.854) (-5429.699) * (-5426.387) (-5400.608) [-5404.068] (-5415.675) -- 0:15:33
450000 -- (-5423.588) (-5411.006) [-5407.185] (-5428.994) * [-5400.487] (-5420.321) (-5403.023) (-5408.483) -- 0:15:31
Average standard deviation of split frequencies: 0.009925
451000 -- (-5432.917) (-5408.280) [-5404.529] (-5419.210) * (-5411.959) (-5419.008) (-5407.403) [-5409.827] -- 0:15:30
452000 -- (-5440.579) [-5403.920] (-5416.777) (-5413.572) * (-5418.932) (-5405.887) (-5423.936) [-5401.205] -- 0:15:28
453000 -- (-5437.969) (-5420.175) [-5400.806] (-5402.502) * (-5410.667) (-5399.428) [-5418.577] (-5436.967) -- 0:15:27
454000 -- (-5426.870) (-5423.720) [-5410.002] (-5417.112) * (-5420.949) (-5406.847) [-5395.406] (-5400.401) -- 0:15:24
455000 -- (-5415.099) (-5417.340) (-5417.763) [-5408.387] * (-5402.331) (-5430.928) [-5416.666] (-5409.223) -- 0:15:23
Average standard deviation of split frequencies: 0.010602
456000 -- (-5414.372) (-5418.298) (-5411.455) [-5412.107] * (-5403.384) [-5408.975] (-5410.484) (-5408.528) -- 0:15:22
457000 -- [-5393.333] (-5418.324) (-5420.220) (-5407.675) * (-5416.182) (-5412.725) [-5406.487] (-5395.197) -- 0:15:19
458000 -- (-5400.256) (-5421.425) (-5417.820) [-5407.277] * (-5413.843) (-5424.942) (-5404.248) [-5406.921] -- 0:15:18
459000 -- (-5406.164) [-5395.813] (-5403.333) (-5404.648) * (-5427.992) (-5419.103) [-5392.607] (-5419.909) -- 0:15:16
460000 -- (-5414.751) (-5428.977) (-5412.573) [-5408.800] * (-5414.876) (-5415.750) [-5397.386] (-5422.419) -- 0:15:14
Average standard deviation of split frequencies: 0.009733
461000 -- (-5416.324) (-5423.886) (-5411.451) [-5406.900] * (-5422.239) (-5408.478) (-5415.105) [-5411.168] -- 0:15:13
462000 -- (-5409.079) (-5414.444) (-5418.682) [-5420.713] * [-5401.483] (-5400.644) (-5415.497) (-5411.116) -- 0:15:11
463000 -- (-5411.304) (-5426.054) (-5420.083) [-5414.224] * (-5429.229) [-5405.896] (-5414.631) (-5409.175) -- 0:15:09
464000 -- (-5420.171) (-5425.353) [-5419.333] (-5411.207) * (-5424.140) (-5402.727) (-5416.796) [-5402.627] -- 0:15:07
465000 -- [-5409.250] (-5427.065) (-5411.000) (-5417.707) * [-5417.425] (-5415.253) (-5413.446) (-5413.128) -- 0:15:06
Average standard deviation of split frequencies: 0.009551
466000 -- [-5418.383] (-5421.829) (-5408.733) (-5414.191) * (-5408.799) (-5413.962) (-5427.344) [-5407.037] -- 0:15:04
467000 -- (-5399.096) (-5410.749) [-5394.235] (-5419.240) * [-5418.915] (-5428.068) (-5415.094) (-5403.836) -- 0:15:02
468000 -- [-5406.468] (-5399.628) (-5406.865) (-5413.959) * (-5416.193) [-5407.470] (-5423.808) (-5424.477) -- 0:15:01
469000 -- (-5423.524) [-5401.743] (-5418.956) (-5421.185) * [-5395.686] (-5426.440) (-5415.057) (-5407.206) -- 0:15:00
470000 -- (-5417.219) [-5398.115] (-5437.525) (-5411.671) * [-5394.909] (-5411.801) (-5401.385) (-5411.727) -- 0:14:57
Average standard deviation of split frequencies: 0.009806
471000 -- (-5422.291) (-5416.554) [-5396.552] (-5406.830) * (-5406.161) (-5425.068) (-5401.806) [-5392.286] -- 0:14:56
472000 -- (-5429.702) [-5403.008] (-5421.044) (-5426.254) * (-5411.072) (-5436.888) (-5414.388) [-5401.261] -- 0:14:54
473000 -- (-5411.163) (-5409.265) (-5428.363) [-5407.403] * [-5410.213] (-5421.837) (-5422.212) (-5406.766) -- 0:14:52
474000 -- (-5409.079) (-5408.395) (-5412.426) [-5406.629] * (-5404.795) [-5415.378] (-5417.503) (-5423.019) -- 0:14:51
475000 -- [-5411.628] (-5420.933) (-5405.989) (-5411.310) * (-5391.147) [-5422.482] (-5411.671) (-5420.331) -- 0:14:49
Average standard deviation of split frequencies: 0.009788
476000 -- (-5420.227) (-5428.290) (-5436.418) [-5403.394] * [-5410.588] (-5421.662) (-5420.908) (-5417.952) -- 0:14:48
477000 -- (-5425.076) (-5423.367) (-5412.102) [-5408.528] * [-5412.204] (-5417.694) (-5412.805) (-5436.569) -- 0:14:45
478000 -- (-5423.654) (-5419.870) [-5408.034] (-5408.920) * (-5407.566) (-5443.496) [-5407.382] (-5434.805) -- 0:14:44
479000 -- (-5410.481) [-5398.487] (-5404.752) (-5421.750) * (-5399.051) (-5424.967) (-5432.734) [-5413.505] -- 0:14:43
480000 -- (-5411.168) (-5400.168) [-5423.277] (-5412.077) * (-5409.728) [-5397.219] (-5440.142) (-5409.553) -- 0:14:41
Average standard deviation of split frequencies: 0.009420
481000 -- (-5404.677) [-5388.489] (-5423.784) (-5412.368) * [-5415.157] (-5410.247) (-5423.127) (-5400.352) -- 0:14:39
482000 -- (-5436.784) (-5412.828) [-5417.500] (-5409.100) * (-5427.733) [-5398.343] (-5433.256) (-5399.012) -- 0:14:38
483000 -- (-5413.219) (-5404.310) (-5414.437) [-5401.925] * (-5410.731) (-5412.812) (-5425.839) [-5412.204] -- 0:14:36
484000 -- (-5420.996) (-5413.467) (-5409.985) [-5407.926] * (-5416.324) [-5398.492] (-5411.407) (-5411.870) -- 0:14:35
485000 -- (-5415.998) [-5404.119] (-5438.417) (-5395.734) * (-5415.309) (-5415.337) [-5418.157] (-5399.297) -- 0:14:32
Average standard deviation of split frequencies: 0.009700
486000 -- (-5399.267) (-5405.566) (-5422.313) [-5396.639] * (-5412.033) (-5408.081) (-5419.172) [-5409.737] -- 0:14:31
487000 -- (-5397.103) (-5418.061) (-5423.007) [-5396.841] * (-5436.322) [-5405.284] (-5418.084) (-5396.712) -- 0:14:30
488000 -- (-5408.946) (-5428.463) (-5426.729) [-5405.643] * (-5411.780) (-5396.380) [-5409.453] (-5403.070) -- 0:14:27
489000 -- (-5413.222) (-5404.962) [-5408.360] (-5410.825) * (-5420.532) (-5422.549) (-5414.455) [-5391.764] -- 0:14:26
490000 -- (-5426.683) [-5408.800] (-5413.315) (-5412.821) * (-5426.218) (-5422.400) (-5405.648) [-5402.158] -- 0:14:24
Average standard deviation of split frequencies: 0.009674
491000 -- (-5421.624) (-5426.666) (-5416.149) [-5408.992] * (-5413.851) (-5404.541) (-5413.207) [-5412.856] -- 0:14:22
492000 -- (-5416.503) (-5410.343) [-5416.384] (-5409.633) * (-5408.534) [-5419.223] (-5392.656) (-5423.933) -- 0:14:21
493000 -- (-5421.203) (-5414.612) (-5403.457) [-5405.823] * (-5420.123) [-5406.317] (-5424.809) (-5419.457) -- 0:14:19
494000 -- (-5425.354) (-5429.560) (-5409.473) [-5399.865] * (-5432.153) (-5407.840) [-5422.170] (-5407.111) -- 0:14:17
495000 -- (-5424.460) (-5394.149) (-5413.396) [-5390.246] * [-5410.333] (-5413.181) (-5427.841) (-5406.185) -- 0:14:15
Average standard deviation of split frequencies: 0.009637
496000 -- (-5412.203) (-5435.722) (-5409.683) [-5398.569] * [-5397.033] (-5414.187) (-5411.033) (-5402.734) -- 0:14:14
497000 -- (-5431.182) (-5415.150) (-5415.342) [-5397.278] * [-5409.313] (-5419.277) (-5407.387) (-5404.353) -- 0:14:13
498000 -- (-5435.592) (-5410.332) (-5407.889) [-5401.969] * (-5399.387) [-5406.157] (-5396.852) (-5428.192) -- 0:14:11
499000 -- (-5411.815) [-5406.327] (-5427.617) (-5399.379) * [-5412.153] (-5405.865) (-5402.096) (-5414.997) -- 0:14:09
500000 -- (-5421.547) [-5406.313] (-5431.103) (-5406.656) * [-5404.395] (-5412.371) (-5428.362) (-5425.875) -- 0:14:08
Average standard deviation of split frequencies: 0.010029
501000 -- (-5405.582) (-5428.025) (-5424.677) [-5414.294] * (-5415.621) (-5403.390) [-5409.227] (-5408.859) -- 0:14:06
502000 -- (-5428.633) (-5424.862) (-5432.171) [-5399.440] * (-5399.952) [-5399.065] (-5429.601) (-5414.149) -- 0:14:04
503000 -- (-5422.936) (-5430.860) (-5432.733) [-5408.678] * (-5419.793) [-5395.692] (-5398.805) (-5419.383) -- 0:14:02
504000 -- [-5392.216] (-5409.803) (-5420.778) (-5423.684) * (-5405.985) (-5402.786) [-5406.382] (-5398.910) -- 0:14:01
505000 -- [-5401.018] (-5408.995) (-5403.145) (-5415.793) * (-5409.746) [-5397.993] (-5423.620) (-5420.846) -- 0:14:00
Average standard deviation of split frequencies: 0.011180
506000 -- (-5422.069) (-5426.639) [-5386.839] (-5407.480) * (-5406.994) (-5409.762) (-5409.279) [-5412.816] -- 0:13:57
507000 -- (-5413.170) [-5420.403] (-5411.988) (-5415.205) * (-5401.608) (-5415.055) (-5410.696) [-5406.422] -- 0:13:56
508000 -- (-5426.765) (-5405.917) [-5401.039] (-5407.270) * [-5401.869] (-5429.309) (-5426.393) (-5409.102) -- 0:13:54
509000 -- (-5410.102) [-5404.931] (-5417.538) (-5394.645) * (-5418.659) (-5408.947) (-5421.285) [-5400.750] -- 0:13:52
510000 -- (-5398.157) (-5420.736) (-5411.616) [-5410.114] * (-5406.107) [-5401.263] (-5418.311) (-5410.836) -- 0:13:51
Average standard deviation of split frequencies: 0.011636
511000 -- (-5413.059) (-5410.291) (-5411.571) [-5403.900] * (-5402.492) [-5416.823] (-5430.666) (-5412.008) -- 0:13:48
512000 -- [-5398.933] (-5408.328) (-5409.309) (-5433.443) * [-5407.579] (-5409.161) (-5423.633) (-5407.254) -- 0:13:47
513000 -- [-5408.483] (-5408.609) (-5417.679) (-5428.037) * (-5425.283) (-5417.953) (-5417.362) [-5404.415] -- 0:13:45
514000 -- [-5414.443] (-5411.389) (-5418.473) (-5405.550) * (-5412.698) (-5410.927) [-5414.643] (-5399.391) -- 0:13:43
515000 -- (-5413.490) (-5399.902) (-5421.086) [-5404.513] * (-5424.843) [-5406.309] (-5413.733) (-5399.688) -- 0:13:42
Average standard deviation of split frequencies: 0.011260
516000 -- (-5432.621) [-5406.802] (-5402.910) (-5422.396) * (-5400.070) (-5414.179) (-5412.538) [-5401.152] -- 0:13:40
517000 -- (-5418.073) (-5427.270) [-5390.116] (-5409.455) * (-5426.870) (-5410.585) (-5442.793) [-5407.862] -- 0:13:38
518000 -- [-5407.079] (-5422.637) (-5425.279) (-5415.949) * (-5441.088) (-5409.184) (-5426.346) [-5396.083] -- 0:13:36
519000 -- (-5402.079) [-5403.581] (-5425.940) (-5434.144) * (-5428.984) (-5422.173) (-5398.677) [-5408.924] -- 0:13:35
520000 -- (-5417.893) (-5415.548) [-5410.423] (-5408.602) * (-5409.251) (-5410.802) (-5422.259) [-5397.540] -- 0:13:33
Average standard deviation of split frequencies: 0.011538
521000 -- (-5413.040) [-5411.340] (-5411.493) (-5415.816) * (-5420.576) (-5416.681) (-5408.530) [-5392.124] -- 0:13:31
522000 -- (-5408.823) [-5421.758] (-5409.370) (-5422.962) * (-5408.601) (-5411.481) (-5401.266) [-5404.899] -- 0:13:30
523000 -- [-5412.674] (-5409.707) (-5406.897) (-5405.869) * (-5416.668) (-5409.373) (-5405.313) [-5410.000] -- 0:13:28
524000 -- (-5424.708) (-5408.803) (-5422.282) [-5410.040] * (-5410.567) (-5426.251) (-5421.359) [-5416.821] -- 0:13:26
525000 -- (-5418.954) [-5404.754] (-5406.563) (-5392.467) * (-5416.100) (-5415.816) [-5410.721] (-5403.345) -- 0:13:25
Average standard deviation of split frequencies: 0.011734
526000 -- (-5420.344) (-5400.196) (-5415.012) [-5405.873] * (-5410.145) [-5408.192] (-5406.155) (-5420.889) -- 0:13:23
527000 -- (-5413.448) [-5404.680] (-5413.833) (-5413.010) * (-5405.807) (-5404.120) (-5408.694) [-5401.026] -- 0:13:22
528000 -- (-5403.550) [-5402.706] (-5439.630) (-5417.474) * (-5419.963) [-5412.262] (-5402.350) (-5417.268) -- 0:13:20
529000 -- [-5403.671] (-5400.051) (-5423.130) (-5411.023) * (-5412.346) [-5398.572] (-5411.525) (-5412.587) -- 0:13:18
530000 -- (-5414.775) (-5411.190) [-5421.800] (-5427.580) * (-5425.269) (-5400.606) (-5417.764) [-5407.135] -- 0:13:17
Average standard deviation of split frequencies: 0.012085
531000 -- (-5396.924) [-5398.129] (-5411.656) (-5436.586) * (-5415.998) (-5408.253) [-5399.538] (-5409.226) -- 0:13:14
532000 -- (-5429.167) (-5420.999) [-5401.744] (-5422.509) * (-5417.759) [-5400.799] (-5417.759) (-5404.399) -- 0:13:13
533000 -- (-5425.040) (-5417.280) (-5408.226) [-5404.811] * [-5407.313] (-5417.878) (-5413.590) (-5399.642) -- 0:13:12
534000 -- (-5430.432) [-5412.315] (-5396.548) (-5404.826) * [-5398.852] (-5398.349) (-5406.910) (-5409.474) -- 0:13:09
535000 -- (-5436.187) (-5411.938) [-5394.117] (-5408.608) * [-5400.556] (-5419.781) (-5415.088) (-5417.153) -- 0:13:08
Average standard deviation of split frequencies: 0.012681
536000 -- [-5419.052] (-5410.888) (-5415.164) (-5419.971) * [-5401.327] (-5413.558) (-5417.925) (-5414.058) -- 0:13:06
537000 -- (-5419.105) (-5404.807) (-5404.015) [-5402.166] * (-5397.535) (-5417.745) (-5422.617) [-5407.890] -- 0:13:04
538000 -- [-5407.237] (-5418.020) (-5398.186) (-5426.421) * [-5407.488] (-5424.025) (-5430.214) (-5422.984) -- 0:13:03
539000 -- [-5398.956] (-5422.170) (-5423.717) (-5405.826) * (-5389.925) [-5413.526] (-5416.053) (-5426.189) -- 0:13:01
540000 -- (-5417.219) (-5419.765) (-5434.862) [-5413.799] * [-5396.269] (-5420.323) (-5403.520) (-5411.071) -- 0:12:59
Average standard deviation of split frequencies: 0.011882
541000 -- [-5419.133] (-5405.983) (-5411.105) (-5413.273) * (-5413.689) (-5408.515) [-5408.620] (-5416.212) -- 0:12:58
542000 -- [-5395.878] (-5401.663) (-5410.528) (-5406.186) * (-5406.750) [-5404.131] (-5418.182) (-5419.497) -- 0:12:56
543000 -- [-5401.704] (-5419.892) (-5412.970) (-5408.191) * [-5400.965] (-5401.992) (-5401.045) (-5419.901) -- 0:12:54
544000 -- (-5423.078) (-5402.225) [-5418.067] (-5412.544) * (-5398.646) (-5421.173) [-5400.849] (-5415.225) -- 0:12:52
545000 -- [-5405.967] (-5401.701) (-5398.149) (-5423.604) * (-5408.499) (-5434.453) (-5409.294) [-5393.834] -- 0:12:51
Average standard deviation of split frequencies: 0.011726
546000 -- (-5416.467) (-5419.782) [-5403.425] (-5408.601) * (-5420.014) (-5432.137) [-5401.296] (-5396.112) -- 0:12:49
547000 -- (-5414.604) (-5420.426) (-5416.889) [-5397.247] * [-5403.068] (-5432.205) (-5397.296) (-5407.549) -- 0:12:47
548000 -- (-5418.498) (-5427.987) (-5422.201) [-5389.584] * (-5414.922) (-5419.298) [-5409.523] (-5409.735) -- 0:12:46
549000 -- (-5424.546) (-5413.123) (-5438.081) [-5397.241] * (-5416.268) (-5410.127) [-5405.604] (-5410.934) -- 0:12:43
550000 -- [-5407.165] (-5410.154) (-5432.324) (-5422.381) * [-5414.402] (-5401.713) (-5406.198) (-5423.747) -- 0:12:42
Average standard deviation of split frequencies: 0.011368
551000 -- [-5396.483] (-5419.404) (-5401.524) (-5414.044) * (-5406.062) (-5407.417) [-5407.833] (-5399.961) -- 0:12:41
552000 -- (-5389.065) (-5426.207) [-5398.287] (-5417.127) * (-5413.347) (-5416.577) (-5395.933) [-5401.258] -- 0:12:38
553000 -- [-5410.697] (-5411.975) (-5424.485) (-5422.846) * [-5412.175] (-5406.043) (-5427.611) (-5443.068) -- 0:12:37
554000 -- (-5414.167) (-5402.108) [-5402.491] (-5417.747) * [-5410.647] (-5402.966) (-5428.504) (-5403.913) -- 0:12:35
555000 -- (-5419.066) [-5399.811] (-5432.986) (-5414.992) * (-5414.291) [-5410.927] (-5413.648) (-5423.361) -- 0:12:34
Average standard deviation of split frequencies: 0.011614
556000 -- (-5424.340) (-5410.628) [-5411.260] (-5413.493) * (-5409.954) (-5418.530) (-5422.598) [-5405.091] -- 0:12:32
557000 -- (-5423.962) (-5403.479) (-5414.885) [-5408.413] * [-5409.410] (-5402.555) (-5414.474) (-5437.692) -- 0:12:30
558000 -- (-5422.009) (-5421.479) (-5414.012) [-5404.688] * (-5408.230) (-5409.891) [-5407.215] (-5432.087) -- 0:12:29
559000 -- (-5435.201) (-5412.283) (-5409.723) [-5402.262] * [-5414.747] (-5421.390) (-5416.792) (-5409.646) -- 0:12:27
560000 -- [-5402.866] (-5411.293) (-5401.533) (-5410.535) * (-5420.400) (-5420.883) [-5413.838] (-5409.277) -- 0:12:25
Average standard deviation of split frequencies: 0.012240
561000 -- (-5413.208) (-5419.311) [-5400.415] (-5415.419) * [-5412.658] (-5434.038) (-5428.722) (-5419.322) -- 0:12:24
562000 -- (-5409.755) (-5437.377) (-5390.916) [-5414.826] * [-5410.277] (-5424.087) (-5415.929) (-5430.092) -- 0:12:21
563000 -- (-5404.269) (-5412.831) [-5411.913] (-5438.440) * (-5400.795) (-5421.063) (-5403.522) [-5400.463] -- 0:12:20
564000 -- [-5412.806] (-5426.348) (-5413.450) (-5420.217) * (-5423.612) (-5409.926) (-5422.669) [-5406.975] -- 0:12:19
565000 -- (-5405.156) (-5407.510) [-5398.084] (-5389.784) * (-5427.297) (-5422.741) (-5425.658) [-5400.336] -- 0:12:16
Average standard deviation of split frequencies: 0.012493
566000 -- (-5413.468) (-5416.246) [-5408.261] (-5412.603) * (-5412.965) [-5410.225] (-5419.933) (-5405.993) -- 0:12:15
567000 -- (-5411.940) [-5409.937] (-5425.383) (-5438.193) * (-5433.658) [-5415.287] (-5411.098) (-5426.001) -- 0:12:13
568000 -- (-5422.118) [-5404.084] (-5419.005) (-5411.775) * (-5418.870) (-5446.085) (-5399.430) [-5398.074] -- 0:12:12
569000 -- (-5422.216) (-5414.923) [-5407.429] (-5413.507) * (-5407.491) (-5426.860) [-5399.597] (-5422.855) -- 0:12:10
570000 -- [-5418.577] (-5399.322) (-5407.535) (-5410.973) * (-5427.721) (-5427.250) (-5415.670) [-5399.430] -- 0:12:09
Average standard deviation of split frequencies: 0.013447
571000 -- (-5425.712) [-5396.013] (-5391.622) (-5410.037) * (-5418.081) (-5402.137) (-5411.909) [-5397.414] -- 0:12:07
572000 -- (-5422.716) [-5406.372] (-5407.012) (-5429.981) * (-5403.086) [-5393.794] (-5415.108) (-5402.782) -- 0:12:05
573000 -- (-5428.422) (-5409.357) [-5392.328] (-5419.686) * (-5403.866) (-5407.566) (-5417.349) [-5399.325] -- 0:12:04
574000 -- (-5421.288) [-5405.795] (-5410.500) (-5420.551) * (-5407.371) [-5402.506] (-5405.279) (-5416.042) -- 0:12:02
575000 -- (-5426.632) (-5415.823) (-5402.087) [-5412.290] * (-5418.327) [-5399.429] (-5428.585) (-5426.081) -- 0:12:00
Average standard deviation of split frequencies: 0.013894
576000 -- (-5425.396) (-5416.519) (-5403.945) [-5404.383] * (-5424.319) [-5406.661] (-5414.494) (-5419.391) -- 0:11:59
577000 -- (-5423.366) (-5419.383) [-5419.879] (-5413.882) * (-5417.235) (-5399.190) [-5392.131] (-5424.592) -- 0:11:56
578000 -- (-5412.846) (-5410.500) [-5401.968] (-5412.006) * [-5413.816] (-5412.485) (-5422.679) (-5419.180) -- 0:11:55
579000 -- [-5401.982] (-5415.763) (-5401.722) (-5419.645) * (-5408.277) (-5414.916) (-5419.776) [-5404.105] -- 0:11:54
580000 -- [-5388.240] (-5412.244) (-5420.085) (-5416.346) * (-5419.191) (-5427.689) (-5412.924) [-5395.018] -- 0:11:51
Average standard deviation of split frequencies: 0.013763
581000 -- (-5402.096) [-5405.057] (-5414.801) (-5417.861) * (-5460.762) [-5416.506] (-5418.966) (-5402.149) -- 0:11:50
582000 -- (-5410.397) [-5415.877] (-5421.930) (-5416.054) * (-5419.004) (-5418.558) [-5406.039] (-5419.359) -- 0:11:48
583000 -- [-5412.085] (-5398.815) (-5421.709) (-5421.380) * (-5409.956) (-5420.973) [-5411.555] (-5410.811) -- 0:11:46
584000 -- (-5437.477) [-5398.641] (-5405.969) (-5415.426) * [-5395.603] (-5416.551) (-5425.358) (-5416.509) -- 0:11:45
585000 -- (-5421.144) (-5417.524) (-5415.601) [-5405.908] * [-5399.650] (-5415.861) (-5417.965) (-5418.592) -- 0:11:43
Average standard deviation of split frequencies: 0.013750
586000 -- (-5398.335) (-5422.853) [-5395.983] (-5402.927) * [-5398.718] (-5407.069) (-5399.516) (-5429.899) -- 0:11:42
587000 -- [-5408.915] (-5406.621) (-5396.423) (-5410.126) * [-5415.808] (-5417.322) (-5413.682) (-5414.330) -- 0:11:40
588000 -- (-5404.376) (-5413.156) (-5394.584) [-5404.422] * [-5404.158] (-5404.491) (-5415.245) (-5422.231) -- 0:11:38
589000 -- (-5409.877) (-5406.498) (-5429.038) [-5421.019] * [-5409.049] (-5393.807) (-5413.259) (-5415.669) -- 0:11:37
590000 -- (-5418.087) [-5397.530] (-5411.554) (-5419.546) * (-5408.638) (-5414.498) (-5397.745) [-5386.607] -- 0:11:34
Average standard deviation of split frequencies: 0.014291
591000 -- (-5433.465) (-5404.735) [-5398.698] (-5438.141) * (-5409.782) (-5408.169) [-5396.642] (-5415.592) -- 0:11:33
592000 -- (-5414.006) (-5415.245) (-5421.251) [-5416.128] * (-5424.385) (-5409.422) [-5413.650] (-5433.581) -- 0:11:31
593000 -- [-5406.708] (-5409.135) (-5427.152) (-5405.314) * (-5414.743) [-5403.172] (-5433.055) (-5411.582) -- 0:11:30
594000 -- (-5404.821) (-5416.353) [-5404.956] (-5421.021) * (-5405.781) (-5412.464) [-5409.922] (-5421.168) -- 0:11:28
595000 -- [-5407.783] (-5426.992) (-5408.850) (-5416.929) * (-5411.354) (-5421.156) [-5411.197] (-5430.679) -- 0:11:26
Average standard deviation of split frequencies: 0.013888
596000 -- (-5400.183) (-5408.004) (-5409.092) [-5408.761] * (-5408.072) [-5398.071] (-5414.717) (-5400.396) -- 0:11:25
597000 -- (-5411.028) (-5410.017) (-5411.428) [-5401.109] * [-5391.137] (-5415.105) (-5416.843) (-5410.025) -- 0:11:23
598000 -- (-5433.834) (-5412.897) [-5415.171] (-5405.877) * [-5404.540] (-5410.849) (-5408.761) (-5404.457) -- 0:11:21
599000 -- [-5417.024] (-5413.116) (-5400.517) (-5413.767) * (-5413.297) (-5420.457) (-5408.022) [-5393.787] -- 0:11:20
600000 -- (-5413.328) [-5416.291] (-5406.472) (-5420.592) * [-5403.312] (-5427.089) (-5413.629) (-5400.995) -- 0:11:18
Average standard deviation of split frequencies: 0.014017
601000 -- (-5404.339) [-5409.402] (-5409.316) (-5414.763) * (-5411.239) (-5411.333) (-5407.568) [-5406.718] -- 0:11:16
602000 -- (-5426.155) [-5409.159] (-5419.784) (-5417.919) * (-5403.192) (-5413.675) (-5422.511) [-5397.850] -- 0:11:15
603000 -- (-5421.430) [-5398.558] (-5406.412) (-5410.198) * (-5410.603) [-5398.947] (-5415.409) (-5402.021) -- 0:11:12
604000 -- (-5419.435) (-5416.873) [-5409.009] (-5404.837) * [-5398.928] (-5415.071) (-5421.004) (-5414.029) -- 0:11:11
605000 -- (-5414.327) (-5421.214) (-5438.054) [-5410.674] * (-5413.141) [-5408.618] (-5417.350) (-5413.977) -- 0:11:09
Average standard deviation of split frequencies: 0.014400
606000 -- [-5413.242] (-5405.561) (-5416.667) (-5402.330) * (-5450.202) (-5400.667) [-5410.366] (-5415.546) -- 0:11:07
607000 -- (-5408.995) (-5409.258) [-5398.077] (-5414.720) * [-5402.149] (-5408.555) (-5415.276) (-5406.268) -- 0:11:06
608000 -- (-5404.829) (-5406.565) (-5408.363) [-5411.540] * [-5404.984] (-5401.914) (-5422.832) (-5428.321) -- 0:11:04
609000 -- (-5420.246) [-5416.851] (-5404.327) (-5428.242) * (-5405.901) (-5405.179) (-5423.654) [-5408.522] -- 0:11:02
610000 -- (-5409.706) (-5421.651) (-5414.065) [-5407.641] * (-5406.308) (-5410.776) (-5410.360) [-5409.606] -- 0:11:01
Average standard deviation of split frequencies: 0.015170
611000 -- [-5397.760] (-5413.853) (-5422.647) (-5416.278) * [-5409.062] (-5409.975) (-5405.314) (-5408.227) -- 0:10:59
612000 -- (-5422.711) (-5412.967) (-5440.991) [-5393.968] * (-5408.662) (-5411.843) (-5429.840) [-5410.659] -- 0:10:57
613000 -- (-5409.981) (-5410.561) [-5405.282] (-5406.368) * (-5425.010) (-5413.306) [-5404.393] (-5431.747) -- 0:10:55
614000 -- (-5398.020) [-5404.015] (-5421.091) (-5422.979) * (-5409.573) [-5400.058] (-5407.847) (-5415.369) -- 0:10:54
615000 -- [-5397.423] (-5414.344) (-5408.953) (-5423.349) * (-5405.583) (-5413.781) [-5418.443] (-5400.261) -- 0:10:52
Average standard deviation of split frequencies: 0.015323
616000 -- [-5412.465] (-5412.334) (-5399.995) (-5422.634) * (-5422.402) [-5415.700] (-5420.747) (-5421.567) -- 0:10:50
617000 -- [-5392.012] (-5410.335) (-5406.798) (-5417.052) * [-5398.362] (-5409.638) (-5413.430) (-5417.919) -- 0:10:49
618000 -- [-5399.826] (-5424.449) (-5414.198) (-5424.882) * (-5414.815) (-5418.351) [-5411.660] (-5416.522) -- 0:10:47
619000 -- (-5411.353) (-5405.849) [-5392.033] (-5407.172) * (-5410.453) (-5401.541) [-5420.889] (-5407.304) -- 0:10:45
620000 -- (-5417.764) (-5408.996) (-5428.174) [-5404.196] * (-5406.353) (-5404.202) [-5419.674] (-5417.129) -- 0:10:44
Average standard deviation of split frequencies: 0.015597
621000 -- (-5425.161) [-5409.657] (-5411.823) (-5404.624) * [-5402.415] (-5424.505) (-5421.095) (-5396.211) -- 0:10:42
622000 -- (-5420.523) (-5413.361) (-5426.257) [-5409.841] * [-5409.011] (-5436.494) (-5422.992) (-5397.392) -- 0:10:40
623000 -- (-5404.806) (-5416.731) [-5401.911] (-5421.516) * (-5409.319) (-5426.139) [-5403.992] (-5415.520) -- 0:10:39
624000 -- (-5429.633) [-5395.968] (-5408.665) (-5412.394) * [-5424.185] (-5409.043) (-5400.236) (-5413.197) -- 0:10:37
625000 -- (-5414.682) [-5396.778] (-5406.139) (-5411.465) * (-5414.293) (-5430.837) [-5403.989] (-5410.123) -- 0:10:36
Average standard deviation of split frequencies: 0.014973
626000 -- (-5411.090) (-5408.644) [-5403.256] (-5412.345) * (-5413.034) [-5413.558] (-5411.775) (-5419.414) -- 0:10:33
627000 -- [-5405.900] (-5412.350) (-5421.023) (-5396.146) * (-5411.768) (-5404.040) [-5399.305] (-5412.735) -- 0:10:32
628000 -- (-5410.532) (-5420.564) (-5421.485) [-5416.164] * (-5421.276) (-5431.663) [-5401.970] (-5411.557) -- 0:10:30
629000 -- [-5421.228] (-5404.865) (-5410.865) (-5412.308) * [-5411.278] (-5412.958) (-5415.982) (-5413.553) -- 0:10:28
630000 -- (-5420.540) [-5407.868] (-5415.846) (-5425.035) * (-5426.190) [-5398.698] (-5412.982) (-5423.164) -- 0:10:27
Average standard deviation of split frequencies: 0.014671
631000 -- [-5409.339] (-5419.444) (-5402.352) (-5422.999) * (-5411.447) (-5411.915) [-5407.474] (-5412.309) -- 0:10:25
632000 -- [-5416.747] (-5418.316) (-5416.312) (-5423.000) * [-5418.895] (-5412.349) (-5412.097) (-5411.356) -- 0:10:23
633000 -- (-5422.076) (-5425.898) [-5402.427] (-5408.503) * (-5416.042) (-5426.116) [-5415.002] (-5416.607) -- 0:10:22
634000 -- (-5416.199) (-5427.902) (-5416.532) [-5406.604] * (-5408.444) (-5424.066) [-5405.721] (-5410.700) -- 0:10:20
635000 -- (-5412.102) [-5406.246] (-5410.968) (-5421.114) * [-5403.557] (-5421.593) (-5406.325) (-5406.314) -- 0:10:18
Average standard deviation of split frequencies: 0.014807
636000 -- [-5408.881] (-5422.275) (-5400.001) (-5437.992) * (-5406.984) (-5407.636) [-5402.185] (-5403.172) -- 0:10:16
637000 -- [-5414.404] (-5410.120) (-5417.511) (-5426.206) * (-5415.420) [-5400.041] (-5417.657) (-5412.303) -- 0:10:15
638000 -- [-5408.643] (-5409.079) (-5397.018) (-5411.733) * [-5407.229] (-5406.072) (-5421.718) (-5398.254) -- 0:10:13
639000 -- [-5416.816] (-5417.727) (-5404.163) (-5425.063) * (-5396.627) [-5399.764] (-5408.392) (-5421.316) -- 0:10:11
640000 -- (-5411.071) (-5408.924) (-5431.291) [-5406.738] * (-5408.087) [-5406.334] (-5403.213) (-5433.439) -- 0:10:10
Average standard deviation of split frequencies: 0.014613
641000 -- (-5433.358) (-5399.973) (-5412.435) [-5398.479] * (-5402.133) (-5418.310) (-5412.699) [-5405.393] -- 0:10:08
642000 -- (-5413.921) (-5417.228) [-5398.609] (-5414.045) * (-5411.894) [-5426.155] (-5410.906) (-5411.083) -- 0:10:06
643000 -- (-5419.626) (-5437.315) [-5407.602] (-5413.212) * (-5423.299) [-5407.574] (-5427.433) (-5404.152) -- 0:10:05
644000 -- (-5410.059) (-5431.774) [-5401.123] (-5426.888) * (-5445.468) (-5416.234) (-5401.664) [-5404.307] -- 0:10:03
645000 -- [-5393.445] (-5422.504) (-5415.003) (-5403.298) * (-5417.414) [-5397.482] (-5411.196) (-5405.727) -- 0:10:02
Average standard deviation of split frequencies: 0.014883
646000 -- (-5406.321) (-5403.994) (-5413.695) [-5415.125] * (-5409.669) (-5410.521) [-5411.112] (-5404.140) -- 0:10:00
647000 -- (-5402.408) [-5398.614] (-5406.270) (-5415.802) * [-5398.978] (-5398.918) (-5405.908) (-5415.162) -- 0:09:58
648000 -- (-5411.499) [-5407.469] (-5409.668) (-5399.449) * (-5411.302) [-5407.934] (-5396.823) (-5418.198) -- 0:09:56
649000 -- (-5411.818) [-5404.505] (-5417.625) (-5420.786) * (-5427.601) [-5395.877] (-5398.356) (-5420.897) -- 0:09:54
650000 -- (-5409.656) (-5416.010) (-5405.932) [-5394.263] * (-5419.744) [-5407.764] (-5407.833) (-5416.634) -- 0:09:53
Average standard deviation of split frequencies: 0.014507
651000 -- (-5398.899) (-5432.083) [-5413.889] (-5410.746) * [-5410.356] (-5413.615) (-5407.071) (-5410.363) -- 0:09:51
652000 -- (-5403.352) (-5404.193) (-5423.450) [-5412.295] * (-5405.688) (-5418.583) [-5410.202] (-5421.862) -- 0:09:49
653000 -- [-5407.398] (-5413.119) (-5407.254) (-5420.867) * [-5403.239] (-5440.408) (-5406.139) (-5408.656) -- 0:09:48
654000 -- (-5408.051) (-5408.081) [-5416.415] (-5421.510) * (-5404.276) (-5429.017) (-5425.876) [-5410.019] -- 0:09:46
655000 -- (-5410.779) (-5430.793) (-5418.210) [-5401.493] * (-5414.388) (-5415.911) [-5399.244] (-5416.388) -- 0:09:45
Average standard deviation of split frequencies: 0.014773
656000 -- (-5404.053) (-5415.207) [-5412.669] (-5436.434) * (-5411.729) (-5432.644) (-5417.762) [-5407.867] -- 0:09:43
657000 -- [-5399.269] (-5412.626) (-5415.041) (-5426.241) * (-5409.789) (-5401.654) (-5432.195) [-5411.267] -- 0:09:41
658000 -- (-5402.607) (-5414.226) [-5409.757] (-5414.594) * (-5423.893) [-5393.972] (-5410.007) (-5415.522) -- 0:09:40
659000 -- (-5426.347) [-5406.581] (-5399.101) (-5423.752) * (-5412.425) (-5407.650) (-5419.046) [-5401.312] -- 0:09:37
660000 -- (-5410.972) [-5399.814] (-5402.475) (-5431.988) * (-5426.890) [-5401.430] (-5400.247) (-5417.018) -- 0:09:36
Average standard deviation of split frequencies: 0.014851
661000 -- (-5416.245) (-5396.229) [-5413.332] (-5431.798) * [-5400.402] (-5401.784) (-5421.952) (-5398.257) -- 0:09:34
662000 -- (-5418.449) [-5403.119] (-5421.127) (-5419.584) * (-5420.256) (-5419.049) (-5433.835) [-5409.816] -- 0:09:32
663000 -- (-5400.969) (-5415.166) (-5420.702) [-5420.318] * (-5419.815) (-5416.251) (-5419.861) [-5402.156] -- 0:09:31
664000 -- (-5410.316) [-5399.448] (-5434.450) (-5410.278) * (-5441.737) (-5408.877) (-5407.514) [-5397.698] -- 0:09:29
665000 -- (-5411.798) (-5412.548) (-5403.510) [-5416.908] * (-5419.101) [-5412.428] (-5415.995) (-5409.279) -- 0:09:27
Average standard deviation of split frequencies: 0.015440
666000 -- [-5405.737] (-5403.637) (-5414.652) (-5414.517) * (-5418.076) [-5410.028] (-5409.773) (-5409.455) -- 0:09:26
667000 -- (-5407.550) (-5390.566) (-5414.234) [-5405.323] * (-5407.950) (-5420.956) [-5405.648] (-5412.610) -- 0:09:24
668000 -- (-5424.179) (-5406.892) [-5413.533] (-5412.190) * (-5409.656) [-5422.722] (-5422.946) (-5415.787) -- 0:09:22
669000 -- (-5427.565) (-5416.376) [-5412.549] (-5408.632) * [-5399.806] (-5408.824) (-5417.603) (-5411.611) -- 0:09:21
670000 -- (-5415.809) (-5413.431) (-5428.562) [-5399.529] * (-5417.748) (-5405.845) (-5432.541) [-5398.439] -- 0:09:19
Average standard deviation of split frequencies: 0.015496
671000 -- (-5425.880) [-5408.054] (-5426.157) (-5409.909) * (-5401.475) (-5416.984) [-5423.295] (-5411.076) -- 0:09:17
672000 -- [-5419.105] (-5419.882) (-5429.997) (-5410.792) * (-5410.263) (-5400.676) [-5399.364] (-5409.819) -- 0:09:15
673000 -- [-5408.548] (-5420.702) (-5421.104) (-5421.217) * (-5413.243) (-5422.228) (-5415.609) [-5405.662] -- 0:09:14
674000 -- [-5418.089] (-5430.742) (-5400.409) (-5419.407) * (-5420.697) (-5419.055) [-5414.831] (-5412.795) -- 0:09:12
675000 -- (-5424.946) (-5410.564) [-5397.557] (-5434.771) * (-5430.731) (-5411.367) [-5406.314] (-5414.753) -- 0:09:10
Average standard deviation of split frequencies: 0.015293
676000 -- (-5407.945) (-5410.279) (-5408.603) [-5403.513] * [-5397.987] (-5407.458) (-5417.188) (-5400.431) -- 0:09:09
677000 -- [-5419.170] (-5416.592) (-5408.312) (-5425.688) * [-5397.327] (-5392.516) (-5412.575) (-5422.455) -- 0:09:07
678000 -- [-5404.006] (-5409.345) (-5414.612) (-5427.608) * (-5409.837) [-5396.718] (-5424.139) (-5416.651) -- 0:09:05
679000 -- (-5410.811) (-5420.701) [-5417.798] (-5418.809) * (-5425.744) (-5418.111) (-5425.249) [-5405.131] -- 0:09:04
680000 -- (-5406.999) (-5432.365) (-5420.083) [-5410.820] * (-5419.340) [-5396.852] (-5413.690) (-5408.700) -- 0:09:02
Average standard deviation of split frequencies: 0.015220
681000 -- [-5394.798] (-5413.263) (-5414.712) (-5414.153) * (-5424.242) [-5407.657] (-5411.630) (-5406.551) -- 0:09:00
682000 -- (-5406.256) (-5413.246) [-5405.742] (-5430.870) * (-5407.994) (-5408.040) (-5420.963) [-5414.896] -- 0:08:59
683000 -- (-5423.354) (-5418.843) (-5418.344) [-5408.584] * (-5416.490) (-5419.149) [-5408.348] (-5411.070) -- 0:08:56
684000 -- (-5408.657) (-5407.821) (-5422.369) [-5408.362] * (-5407.426) [-5397.457] (-5406.125) (-5396.788) -- 0:08:55
685000 -- (-5426.180) (-5419.418) [-5407.848] (-5408.808) * (-5399.992) (-5404.941) (-5416.263) [-5404.362] -- 0:08:53
Average standard deviation of split frequencies: 0.015182
686000 -- [-5419.426] (-5412.155) (-5422.027) (-5406.694) * (-5405.986) (-5416.772) (-5422.071) [-5412.093] -- 0:08:52
687000 -- [-5404.665] (-5407.023) (-5418.988) (-5408.754) * [-5413.568] (-5400.657) (-5422.089) (-5427.983) -- 0:08:50
688000 -- (-5430.170) [-5406.759] (-5414.728) (-5416.402) * (-5419.590) (-5410.505) [-5404.468] (-5402.727) -- 0:08:48
689000 -- (-5416.220) (-5414.765) [-5389.077] (-5428.591) * (-5413.398) (-5406.500) (-5413.546) [-5398.503] -- 0:08:47
690000 -- (-5415.917) [-5403.625] (-5394.243) (-5437.388) * (-5414.689) (-5410.226) [-5399.131] (-5408.759) -- 0:08:45
Average standard deviation of split frequencies: 0.015397
691000 -- [-5395.650] (-5401.051) (-5436.397) (-5409.806) * (-5431.416) (-5417.601) (-5406.333) [-5396.909] -- 0:08:43
692000 -- (-5443.580) (-5426.776) [-5412.891] (-5411.523) * (-5421.235) (-5404.931) (-5403.211) [-5409.901] -- 0:08:42
693000 -- (-5437.174) (-5405.330) (-5416.263) [-5416.584] * (-5412.503) [-5404.294] (-5414.227) (-5403.516) -- 0:08:40
694000 -- (-5432.996) (-5426.355) (-5405.352) [-5396.963] * (-5421.736) [-5414.796] (-5400.721) (-5409.644) -- 0:08:38
695000 -- [-5394.943] (-5407.773) (-5415.921) (-5412.778) * (-5408.158) (-5407.761) (-5436.637) [-5416.451] -- 0:08:36
Average standard deviation of split frequencies: 0.015830
696000 -- [-5402.459] (-5421.189) (-5436.866) (-5409.641) * (-5404.883) (-5414.146) (-5424.354) [-5397.650] -- 0:08:34
697000 -- [-5401.125] (-5418.103) (-5428.227) (-5405.332) * (-5390.651) (-5413.232) (-5420.719) [-5400.272] -- 0:08:33
698000 -- (-5395.946) (-5410.845) [-5402.009] (-5408.629) * (-5416.414) [-5393.003] (-5416.790) (-5412.572) -- 0:08:31
699000 -- [-5401.725] (-5400.561) (-5404.738) (-5412.631) * (-5424.455) (-5403.561) (-5412.576) [-5415.773] -- 0:08:30
700000 -- (-5410.812) (-5414.938) [-5403.456] (-5407.781) * (-5416.824) [-5405.394] (-5424.005) (-5439.012) -- 0:08:28
Average standard deviation of split frequencies: 0.015662
701000 -- (-5411.770) (-5419.294) [-5394.566] (-5417.309) * (-5420.389) [-5400.878] (-5405.389) (-5419.842) -- 0:08:26
702000 -- (-5414.441) (-5420.749) [-5411.425] (-5428.352) * (-5418.337) [-5400.355] (-5408.746) (-5410.697) -- 0:08:25
703000 -- [-5402.869] (-5414.512) (-5417.417) (-5418.592) * (-5428.702) (-5415.894) (-5403.245) [-5404.177] -- 0:08:23
704000 -- [-5410.313] (-5398.854) (-5417.079) (-5415.548) * (-5431.533) (-5424.384) (-5417.612) [-5405.485] -- 0:08:21
705000 -- (-5417.432) (-5411.020) (-5413.105) [-5403.505] * (-5428.275) (-5418.971) (-5402.199) [-5402.177] -- 0:08:20
Average standard deviation of split frequencies: 0.015792
706000 -- [-5407.688] (-5419.754) (-5429.169) (-5406.427) * (-5426.356) (-5409.909) (-5416.538) [-5403.335] -- 0:08:18
707000 -- [-5394.681] (-5427.241) (-5414.164) (-5421.992) * (-5418.261) (-5420.289) (-5420.046) [-5401.449] -- 0:08:16
708000 -- [-5397.586] (-5416.943) (-5412.382) (-5431.616) * [-5401.600] (-5405.637) (-5419.721) (-5411.476) -- 0:08:14
709000 -- (-5411.912) (-5423.585) (-5401.366) [-5417.523] * (-5421.662) (-5395.242) (-5417.692) [-5406.844] -- 0:08:13
710000 -- [-5405.302] (-5411.996) (-5401.965) (-5417.882) * (-5425.926) (-5414.834) (-5412.930) [-5404.019] -- 0:08:11
Average standard deviation of split frequencies: 0.015303
711000 -- [-5402.407] (-5417.076) (-5420.338) (-5426.623) * (-5423.244) [-5414.325] (-5418.525) (-5418.640) -- 0:08:09
712000 -- (-5406.529) [-5402.158] (-5408.177) (-5417.094) * (-5418.513) [-5403.313] (-5410.588) (-5433.144) -- 0:08:08
713000 -- (-5404.965) (-5404.459) [-5406.925] (-5421.957) * [-5398.634] (-5407.857) (-5410.952) (-5434.720) -- 0:08:06
714000 -- [-5411.235] (-5419.733) (-5413.444) (-5406.339) * (-5416.279) (-5433.681) [-5412.858] (-5413.268) -- 0:08:04
715000 -- (-5408.130) (-5412.034) (-5410.557) [-5426.215] * (-5404.757) (-5431.469) (-5410.634) [-5417.550] -- 0:08:03
Average standard deviation of split frequencies: 0.015464
716000 -- [-5405.080] (-5415.174) (-5423.263) (-5403.223) * (-5409.681) (-5418.930) (-5403.495) [-5394.793] -- 0:08:01
717000 -- (-5419.953) (-5394.490) [-5401.598] (-5413.241) * (-5408.128) [-5405.455] (-5410.215) (-5420.565) -- 0:07:59
718000 -- (-5414.190) [-5400.965] (-5408.121) (-5428.717) * (-5413.513) (-5409.936) [-5410.227] (-5412.425) -- 0:07:57
719000 -- (-5410.659) [-5403.535] (-5408.094) (-5430.616) * (-5409.185) [-5400.825] (-5429.189) (-5435.735) -- 0:07:56
720000 -- (-5405.154) [-5411.533] (-5418.781) (-5417.582) * (-5417.255) (-5404.324) (-5422.523) [-5399.452] -- 0:07:54
Average standard deviation of split frequencies: 0.016049
721000 -- (-5396.351) (-5424.243) (-5411.053) [-5422.765] * (-5403.716) (-5411.919) (-5415.694) [-5404.941] -- 0:07:52
722000 -- (-5414.705) (-5414.070) [-5404.577] (-5448.738) * (-5400.913) (-5409.958) [-5409.754] (-5408.295) -- 0:07:51
723000 -- [-5414.248] (-5412.779) (-5439.514) (-5406.195) * (-5410.275) [-5406.766] (-5402.900) (-5409.591) -- 0:07:49
724000 -- (-5426.104) (-5420.535) (-5423.521) [-5416.082] * (-5423.047) (-5418.687) (-5416.449) [-5420.995] -- 0:07:47
725000 -- [-5417.223] (-5404.024) (-5418.218) (-5413.081) * [-5396.879] (-5421.985) (-5412.770) (-5411.591) -- 0:07:46
Average standard deviation of split frequencies: 0.015659
726000 -- (-5400.262) [-5409.307] (-5423.392) (-5410.385) * [-5400.621] (-5417.166) (-5425.628) (-5418.353) -- 0:07:44
727000 -- [-5402.111] (-5408.356) (-5420.412) (-5416.397) * (-5410.818) (-5408.501) [-5407.228] (-5424.095) -- 0:07:42
728000 -- (-5414.070) [-5402.141] (-5427.612) (-5420.215) * (-5411.619) [-5411.323] (-5421.712) (-5395.169) -- 0:07:41
729000 -- [-5393.603] (-5424.945) (-5425.968) (-5417.334) * (-5412.096) (-5403.353) [-5406.213] (-5405.855) -- 0:07:39
730000 -- (-5405.671) (-5410.801) [-5426.684] (-5418.137) * [-5398.672] (-5425.544) (-5400.621) (-5404.357) -- 0:07:37
Average standard deviation of split frequencies: 0.015154
731000 -- (-5419.418) [-5412.312] (-5422.028) (-5409.792) * (-5401.907) (-5432.392) (-5418.988) [-5417.444] -- 0:07:35
732000 -- [-5412.371] (-5404.806) (-5417.080) (-5414.708) * (-5402.639) (-5426.357) [-5402.725] (-5401.136) -- 0:07:33
733000 -- [-5406.154] (-5407.751) (-5426.442) (-5419.182) * [-5418.306] (-5424.090) (-5414.689) (-5400.773) -- 0:07:32
734000 -- [-5405.198] (-5432.770) (-5411.465) (-5394.733) * (-5412.610) [-5410.043] (-5411.278) (-5423.307) -- 0:07:30
735000 -- (-5428.219) (-5403.957) [-5399.851] (-5424.913) * [-5406.823] (-5395.749) (-5426.999) (-5431.794) -- 0:07:28
Average standard deviation of split frequencies: 0.014374
736000 -- (-5419.125) (-5406.770) (-5397.159) [-5409.899] * (-5427.054) (-5410.789) [-5423.980] (-5424.350) -- 0:07:27
737000 -- [-5406.620] (-5408.291) (-5402.172) (-5409.085) * (-5420.379) [-5402.200] (-5421.007) (-5429.675) -- 0:07:25
738000 -- (-5403.250) [-5402.686] (-5408.379) (-5413.454) * (-5413.773) (-5409.255) [-5411.463] (-5430.528) -- 0:07:23
739000 -- (-5412.284) [-5403.696] (-5416.683) (-5416.059) * (-5405.109) (-5414.366) [-5406.259] (-5438.834) -- 0:07:22
740000 -- (-5419.432) (-5420.209) [-5416.537] (-5418.834) * [-5399.176] (-5420.338) (-5407.539) (-5420.214) -- 0:07:20
Average standard deviation of split frequencies: 0.014224
741000 -- [-5398.184] (-5423.411) (-5417.382) (-5447.559) * [-5395.241] (-5405.375) (-5406.820) (-5420.710) -- 0:07:18
742000 -- (-5436.646) (-5415.421) [-5407.583] (-5416.128) * [-5407.923] (-5404.707) (-5422.445) (-5421.940) -- 0:07:17
743000 -- (-5418.302) [-5409.370] (-5405.625) (-5422.812) * (-5420.389) (-5401.796) (-5418.127) [-5404.327] -- 0:07:15
744000 -- (-5434.023) [-5399.778] (-5416.049) (-5421.848) * (-5433.295) (-5410.924) [-5403.967] (-5411.515) -- 0:07:13
745000 -- (-5413.008) (-5409.642) [-5413.952] (-5424.795) * (-5425.426) (-5406.750) [-5413.384] (-5406.036) -- 0:07:11
Average standard deviation of split frequencies: 0.014843
746000 -- [-5404.648] (-5418.644) (-5431.389) (-5444.197) * (-5430.412) (-5410.559) (-5409.456) [-5406.255] -- 0:07:10
747000 -- (-5435.455) (-5420.191) (-5415.597) [-5413.383] * (-5413.420) [-5426.505] (-5406.916) (-5406.057) -- 0:07:08
748000 -- (-5412.072) [-5392.564] (-5401.239) (-5416.657) * (-5412.840) [-5418.394] (-5425.556) (-5417.159) -- 0:07:06
749000 -- [-5420.157] (-5407.481) (-5403.622) (-5424.853) * [-5420.389] (-5403.392) (-5416.894) (-5419.730) -- 0:07:05
750000 -- (-5430.362) (-5396.622) [-5395.905] (-5402.840) * [-5404.635] (-5434.769) (-5404.902) (-5416.738) -- 0:07:03
Average standard deviation of split frequencies: 0.014254
751000 -- (-5419.548) [-5410.358] (-5407.099) (-5399.052) * (-5410.785) (-5408.702) [-5404.079] (-5403.737) -- 0:07:01
752000 -- (-5410.616) (-5410.302) (-5417.958) [-5416.405] * (-5422.964) [-5406.478] (-5409.602) (-5395.609) -- 0:07:00
753000 -- (-5403.946) (-5417.569) (-5438.810) [-5398.879] * (-5418.175) (-5408.559) (-5422.493) [-5400.202] -- 0:06:58
754000 -- [-5391.113] (-5403.875) (-5425.836) (-5418.473) * (-5415.239) (-5412.868) (-5428.373) [-5388.326] -- 0:06:56
755000 -- (-5406.957) (-5439.762) (-5420.540) [-5400.510] * (-5415.210) (-5408.658) [-5414.161] (-5414.622) -- 0:06:55
Average standard deviation of split frequencies: 0.013950
756000 -- [-5401.336] (-5404.872) (-5397.724) (-5409.528) * (-5410.328) (-5417.038) [-5400.791] (-5409.404) -- 0:06:53
757000 -- [-5392.563] (-5413.415) (-5393.724) (-5434.736) * (-5417.275) [-5408.351] (-5408.937) (-5403.865) -- 0:06:51
758000 -- (-5427.053) [-5399.702] (-5412.308) (-5413.299) * [-5406.760] (-5406.373) (-5414.622) (-5411.925) -- 0:06:49
759000 -- (-5401.964) [-5411.815] (-5400.173) (-5406.517) * (-5414.494) (-5427.622) [-5413.280] (-5415.430) -- 0:06:48
760000 -- [-5401.337] (-5412.451) (-5403.307) (-5411.415) * (-5419.460) [-5409.534] (-5412.797) (-5421.656) -- 0:06:46
Average standard deviation of split frequencies: 0.014167
761000 -- (-5417.269) (-5408.033) (-5426.738) [-5403.525] * (-5403.001) (-5402.563) (-5424.896) [-5399.118] -- 0:06:44
762000 -- (-5419.463) (-5423.889) (-5401.626) [-5401.488] * (-5404.494) (-5406.345) (-5415.783) [-5404.906] -- 0:06:43
763000 -- (-5434.009) (-5417.778) [-5422.523] (-5424.976) * (-5424.710) (-5414.439) (-5410.737) [-5402.770] -- 0:06:41
764000 -- [-5414.075] (-5410.077) (-5416.512) (-5409.594) * (-5408.235) (-5416.795) (-5428.666) [-5423.219] -- 0:06:40
765000 -- (-5416.153) (-5408.106) [-5402.445] (-5411.159) * [-5400.918] (-5421.296) (-5402.271) (-5424.047) -- 0:06:38
Average standard deviation of split frequencies: 0.014040
766000 -- (-5426.167) (-5413.145) (-5410.843) [-5406.592] * [-5396.598] (-5413.508) (-5420.989) (-5417.377) -- 0:06:36
767000 -- [-5391.938] (-5423.363) (-5396.424) (-5417.308) * (-5417.594) (-5419.205) (-5401.703) [-5402.673] -- 0:06:34
768000 -- (-5420.825) (-5435.051) [-5408.823] (-5406.803) * (-5415.280) (-5403.807) [-5398.289] (-5404.816) -- 0:06:33
769000 -- (-5415.786) (-5414.680) [-5406.974] (-5419.796) * (-5426.171) (-5416.692) [-5404.224] (-5433.650) -- 0:06:31
770000 -- (-5424.807) (-5405.572) [-5402.103] (-5413.487) * (-5425.773) [-5409.171] (-5406.346) (-5419.907) -- 0:06:29
Average standard deviation of split frequencies: 0.014012
771000 -- [-5415.994] (-5409.517) (-5403.789) (-5430.502) * (-5423.704) [-5402.963] (-5410.225) (-5409.899) -- 0:06:27
772000 -- (-5409.819) [-5409.956] (-5421.386) (-5434.072) * (-5408.353) (-5406.222) [-5415.895] (-5410.006) -- 0:06:26
773000 -- (-5408.526) (-5416.771) [-5409.076] (-5419.580) * (-5415.087) [-5424.756] (-5429.368) (-5421.832) -- 0:06:24
774000 -- [-5401.908] (-5421.951) (-5405.153) (-5417.336) * (-5461.661) (-5398.521) (-5407.264) [-5404.205] -- 0:06:22
775000 -- (-5414.561) (-5419.156) [-5410.674] (-5396.744) * (-5421.386) [-5395.403] (-5412.949) (-5410.531) -- 0:06:21
Average standard deviation of split frequencies: 0.014438
776000 -- [-5412.208] (-5419.211) (-5427.364) (-5402.146) * (-5397.709) [-5409.782] (-5422.655) (-5407.800) -- 0:06:19
777000 -- (-5406.795) [-5407.063] (-5421.512) (-5413.862) * (-5410.106) (-5393.606) (-5420.777) [-5404.657] -- 0:06:17
778000 -- [-5405.670] (-5405.037) (-5425.867) (-5407.044) * [-5427.486] (-5405.013) (-5414.746) (-5418.347) -- 0:06:16
779000 -- (-5413.031) [-5396.497] (-5409.348) (-5404.913) * (-5421.325) [-5414.072] (-5422.885) (-5422.841) -- 0:06:14
780000 -- (-5430.880) [-5397.929] (-5407.673) (-5406.875) * (-5403.562) (-5408.348) [-5410.869] (-5407.240) -- 0:06:12
Average standard deviation of split frequencies: 0.014001
781000 -- (-5420.309) (-5401.332) (-5420.644) [-5397.054] * (-5421.257) (-5407.314) [-5413.806] (-5398.445) -- 0:06:10
782000 -- (-5430.250) (-5415.835) (-5413.422) [-5400.584] * (-5419.289) [-5391.864] (-5409.562) (-5414.738) -- 0:06:09
783000 -- (-5432.485) (-5405.699) (-5412.612) [-5413.615] * (-5413.527) [-5409.124] (-5422.235) (-5417.383) -- 0:06:07
784000 -- (-5427.623) (-5422.104) (-5414.555) [-5412.719] * (-5424.719) (-5406.385) [-5408.114] (-5404.925) -- 0:06:05
785000 -- (-5412.740) (-5421.756) (-5398.645) [-5404.000] * (-5417.607) [-5401.755] (-5404.588) (-5400.397) -- 0:06:04
Average standard deviation of split frequencies: 0.013585
786000 -- [-5391.191] (-5411.253) (-5406.994) (-5415.953) * (-5405.158) (-5411.287) [-5405.775] (-5410.066) -- 0:06:02
787000 -- (-5412.152) [-5409.646] (-5407.280) (-5399.410) * (-5418.621) (-5423.562) [-5409.926] (-5429.569) -- 0:06:00
788000 -- (-5407.592) (-5439.985) [-5408.399] (-5417.731) * (-5404.771) (-5424.894) (-5409.252) [-5404.375] -- 0:05:59
789000 -- [-5409.699] (-5408.451) (-5398.392) (-5428.696) * (-5430.605) [-5409.245] (-5424.860) (-5415.943) -- 0:05:57
790000 -- [-5392.755] (-5410.341) (-5413.745) (-5421.061) * (-5414.903) (-5409.912) [-5400.388] (-5411.882) -- 0:05:55
Average standard deviation of split frequencies: 0.012992
791000 -- [-5393.708] (-5408.811) (-5410.832) (-5410.840) * (-5426.910) [-5402.959] (-5412.306) (-5415.429) -- 0:05:54
792000 -- (-5404.034) [-5416.632] (-5413.229) (-5425.329) * [-5415.351] (-5423.422) (-5405.870) (-5414.368) -- 0:05:52
793000 -- (-5420.275) (-5395.021) (-5422.228) [-5409.038] * (-5421.693) [-5399.244] (-5402.266) (-5414.270) -- 0:05:50
794000 -- (-5412.633) (-5391.633) (-5412.842) [-5407.235] * (-5406.486) (-5418.553) [-5406.411] (-5425.784) -- 0:05:48
795000 -- [-5405.767] (-5403.480) (-5439.493) (-5399.833) * (-5412.592) (-5446.470) [-5413.152] (-5425.331) -- 0:05:47
Average standard deviation of split frequencies: 0.012712
796000 -- (-5408.682) [-5398.380] (-5409.976) (-5429.993) * [-5400.268] (-5419.566) (-5419.675) (-5409.410) -- 0:05:45
797000 -- (-5418.920) [-5396.381] (-5416.952) (-5412.527) * (-5407.547) (-5421.733) [-5403.992] (-5402.206) -- 0:05:43
798000 -- (-5413.855) (-5411.881) (-5441.279) [-5399.940] * (-5399.980) (-5416.807) (-5412.192) [-5395.531] -- 0:05:41
799000 -- [-5401.624] (-5408.362) (-5420.122) (-5403.125) * (-5406.636) (-5420.111) [-5402.005] (-5410.595) -- 0:05:40
800000 -- (-5399.856) [-5407.946] (-5414.451) (-5421.507) * (-5402.826) (-5415.841) (-5400.902) [-5401.870] -- 0:05:38
Average standard deviation of split frequencies: 0.012747
801000 -- [-5424.765] (-5406.880) (-5412.960) (-5403.209) * (-5425.423) (-5427.944) [-5402.371] (-5417.048) -- 0:05:36
802000 -- [-5400.953] (-5404.729) (-5418.303) (-5446.292) * (-5415.300) (-5421.608) [-5397.028] (-5419.798) -- 0:05:35
803000 -- (-5395.727) [-5399.688] (-5422.018) (-5417.241) * [-5404.616] (-5423.609) (-5416.087) (-5417.254) -- 0:05:33
804000 -- (-5409.629) [-5401.878] (-5414.450) (-5420.352) * (-5414.629) (-5411.518) (-5427.669) [-5394.175] -- 0:05:32
805000 -- (-5414.755) [-5405.360] (-5417.240) (-5411.128) * (-5405.107) [-5391.213] (-5412.023) (-5404.041) -- 0:05:30
Average standard deviation of split frequencies: 0.012391
806000 -- [-5398.188] (-5410.763) (-5417.974) (-5423.932) * (-5412.544) (-5404.367) (-5424.404) [-5396.584] -- 0:05:28
807000 -- [-5419.062] (-5417.054) (-5415.337) (-5419.320) * [-5401.514] (-5401.268) (-5417.534) (-5430.471) -- 0:05:26
808000 -- [-5400.836] (-5418.846) (-5401.765) (-5426.080) * (-5409.503) (-5409.799) (-5415.630) [-5404.268] -- 0:05:25
809000 -- [-5411.450] (-5430.870) (-5415.008) (-5417.388) * (-5392.956) (-5423.333) [-5404.926] (-5406.197) -- 0:05:23
810000 -- (-5400.088) (-5415.896) (-5399.129) [-5402.043] * (-5416.162) (-5415.239) (-5409.123) [-5406.934] -- 0:05:21
Average standard deviation of split frequencies: 0.012563
811000 -- (-5408.369) (-5411.653) (-5425.828) [-5411.789] * (-5415.352) (-5441.374) (-5417.755) [-5412.658] -- 0:05:19
812000 -- (-5398.550) (-5406.730) (-5412.668) [-5394.170] * (-5419.798) (-5415.894) [-5403.206] (-5406.623) -- 0:05:18
813000 -- (-5414.514) [-5391.596] (-5410.700) (-5407.381) * (-5425.817) [-5397.048] (-5407.632) (-5438.381) -- 0:05:16
814000 -- (-5408.223) (-5416.231) (-5406.094) [-5413.960] * (-5425.635) (-5394.150) [-5415.114] (-5423.277) -- 0:05:14
815000 -- (-5429.049) (-5416.792) [-5407.026] (-5419.020) * (-5430.601) (-5392.222) [-5397.730] (-5416.118) -- 0:05:13
Average standard deviation of split frequencies: 0.012253
816000 -- (-5432.269) (-5414.776) [-5402.532] (-5423.458) * (-5410.691) (-5406.908) [-5403.767] (-5431.273) -- 0:05:11
817000 -- [-5419.285] (-5419.362) (-5410.204) (-5421.242) * (-5416.235) (-5405.081) [-5407.206] (-5425.449) -- 0:05:09
818000 -- (-5396.777) (-5406.415) (-5407.937) [-5406.138] * (-5396.788) (-5410.624) [-5397.982] (-5441.146) -- 0:05:08
819000 -- (-5405.401) (-5421.849) [-5399.644] (-5412.781) * [-5404.521] (-5413.314) (-5408.092) (-5401.881) -- 0:05:06
820000 -- (-5420.077) [-5394.154] (-5419.644) (-5420.476) * (-5412.025) (-5419.817) [-5408.134] (-5419.168) -- 0:05:04
Average standard deviation of split frequencies: 0.012223
821000 -- (-5421.802) [-5392.654] (-5412.674) (-5406.160) * [-5407.606] (-5419.947) (-5408.932) (-5421.600) -- 0:05:03
822000 -- (-5415.699) (-5410.939) (-5420.117) [-5407.051] * (-5417.054) (-5425.899) (-5413.100) [-5400.558] -- 0:05:01
823000 -- [-5399.514] (-5435.969) (-5413.709) (-5433.112) * (-5411.396) (-5408.353) [-5402.220] (-5403.636) -- 0:04:59
824000 -- (-5405.171) (-5406.872) [-5398.659] (-5419.032) * [-5405.095] (-5419.854) (-5422.502) (-5406.241) -- 0:04:57
825000 -- (-5412.182) [-5407.934] (-5396.651) (-5417.989) * (-5407.781) (-5404.919) (-5418.218) [-5406.206] -- 0:04:56
Average standard deviation of split frequencies: 0.012529
826000 -- (-5406.987) (-5410.989) [-5408.027] (-5412.046) * (-5419.596) (-5407.119) [-5406.096] (-5423.877) -- 0:04:54
827000 -- (-5416.268) (-5435.624) [-5400.573] (-5426.383) * (-5423.160) (-5406.515) [-5409.012] (-5409.783) -- 0:04:52
828000 -- [-5406.178] (-5418.533) (-5410.383) (-5416.520) * (-5417.546) (-5405.097) (-5412.640) [-5407.653] -- 0:04:51
829000 -- (-5416.172) (-5405.937) (-5411.753) [-5407.057] * [-5412.515] (-5424.086) (-5426.708) (-5412.410) -- 0:04:49
830000 -- (-5394.798) (-5424.879) (-5400.034) [-5399.591] * (-5403.567) (-5433.014) (-5421.429) [-5416.192] -- 0:04:47
Average standard deviation of split frequencies: 0.012050
831000 -- [-5408.432] (-5427.180) (-5422.624) (-5408.284) * (-5418.351) (-5402.587) (-5410.987) [-5403.828] -- 0:04:46
832000 -- (-5410.922) (-5424.942) (-5426.042) [-5404.459] * (-5430.072) (-5402.385) (-5421.340) [-5400.994] -- 0:04:44
833000 -- (-5398.369) (-5416.399) [-5415.601] (-5424.414) * (-5420.369) [-5408.722] (-5425.798) (-5415.332) -- 0:04:42
834000 -- (-5416.192) (-5415.443) [-5399.449] (-5414.416) * (-5410.439) [-5405.433] (-5407.870) (-5410.351) -- 0:04:41
835000 -- (-5437.021) [-5408.298] (-5414.626) (-5404.148) * (-5420.238) (-5405.820) (-5417.786) [-5416.416] -- 0:04:39
Average standard deviation of split frequencies: 0.011710
836000 -- (-5416.252) (-5403.768) (-5416.522) [-5406.851] * (-5419.569) (-5415.691) [-5408.377] (-5403.257) -- 0:04:37
837000 -- [-5401.942] (-5424.774) (-5418.601) (-5404.955) * (-5419.366) (-5408.053) (-5423.667) [-5396.614] -- 0:04:35
838000 -- (-5407.972) (-5404.986) [-5414.634] (-5425.549) * [-5401.792] (-5407.005) (-5421.232) (-5402.377) -- 0:04:34
839000 -- [-5398.505] (-5405.640) (-5418.867) (-5410.304) * (-5415.477) (-5403.939) [-5396.159] (-5415.231) -- 0:04:32
840000 -- (-5412.149) [-5398.157] (-5419.782) (-5446.079) * (-5410.495) (-5418.725) [-5408.943] (-5407.590) -- 0:04:30
Average standard deviation of split frequencies: 0.011802
841000 -- (-5447.175) (-5415.977) (-5406.380) [-5412.702] * (-5403.296) (-5412.660) [-5414.529] (-5424.752) -- 0:04:29
842000 -- (-5429.191) (-5412.715) [-5405.179] (-5411.088) * (-5401.301) [-5393.998] (-5413.489) (-5430.350) -- 0:04:27
843000 -- (-5419.406) (-5415.253) (-5406.105) [-5410.793] * (-5393.929) [-5395.336] (-5415.187) (-5415.614) -- 0:04:25
844000 -- (-5415.745) (-5414.675) [-5410.371] (-5414.082) * [-5419.818] (-5407.186) (-5411.851) (-5419.111) -- 0:04:24
845000 -- (-5428.743) (-5422.309) (-5417.050) [-5408.319] * (-5406.833) [-5402.065] (-5419.061) (-5411.722) -- 0:04:22
Average standard deviation of split frequencies: 0.011792
846000 -- (-5423.745) (-5419.217) [-5410.367] (-5414.691) * [-5403.875] (-5413.565) (-5403.429) (-5414.132) -- 0:04:20
847000 -- (-5422.442) (-5414.192) [-5390.277] (-5392.126) * (-5401.602) [-5406.412] (-5431.779) (-5410.524) -- 0:04:19
848000 -- [-5420.213] (-5415.195) (-5413.672) (-5410.607) * [-5402.571] (-5407.178) (-5410.800) (-5412.292) -- 0:04:17
849000 -- (-5409.716) (-5426.633) [-5406.603] (-5404.700) * (-5415.029) [-5408.089] (-5414.785) (-5425.240) -- 0:04:15
850000 -- (-5401.536) (-5417.301) (-5411.448) [-5402.889] * (-5399.091) (-5413.643) [-5408.815] (-5442.170) -- 0:04:13
Average standard deviation of split frequencies: 0.011354
851000 -- (-5401.026) (-5423.109) (-5406.989) [-5408.741] * [-5403.630] (-5422.783) (-5406.951) (-5413.649) -- 0:04:12
852000 -- (-5416.641) [-5394.034] (-5415.406) (-5433.800) * (-5417.547) [-5394.218] (-5417.850) (-5419.544) -- 0:04:10
853000 -- (-5406.088) [-5404.332] (-5408.938) (-5402.601) * (-5425.104) [-5399.492] (-5428.147) (-5414.767) -- 0:04:08
854000 -- [-5409.425] (-5415.930) (-5436.218) (-5409.260) * [-5410.587] (-5416.341) (-5429.043) (-5416.131) -- 0:04:07
855000 -- (-5400.196) [-5415.879] (-5426.925) (-5403.820) * [-5407.173] (-5408.187) (-5428.366) (-5413.918) -- 0:04:05
Average standard deviation of split frequencies: 0.010989
856000 -- (-5406.104) [-5406.208] (-5423.569) (-5416.425) * (-5416.046) [-5396.892] (-5421.237) (-5413.108) -- 0:04:03
857000 -- [-5419.029] (-5405.960) (-5417.219) (-5406.435) * (-5415.574) (-5416.700) [-5409.420] (-5435.932) -- 0:04:02
858000 -- [-5395.173] (-5452.132) (-5416.974) (-5409.095) * [-5395.633] (-5405.679) (-5410.229) (-5425.797) -- 0:04:00
859000 -- [-5407.277] (-5446.498) (-5405.251) (-5412.649) * (-5405.053) [-5398.889] (-5407.146) (-5407.175) -- 0:03:58
860000 -- (-5427.746) (-5420.276) [-5405.363] (-5411.906) * (-5434.770) (-5410.273) (-5404.567) [-5409.823] -- 0:03:57
Average standard deviation of split frequencies: 0.010993
861000 -- [-5406.931] (-5400.201) (-5401.759) (-5409.839) * (-5404.277) (-5421.107) [-5398.926] (-5402.967) -- 0:03:55
862000 -- [-5400.689] (-5413.781) (-5405.633) (-5413.198) * (-5410.879) [-5405.255] (-5416.967) (-5417.807) -- 0:03:53
863000 -- (-5427.225) (-5414.547) [-5406.002] (-5403.819) * [-5398.272] (-5412.367) (-5410.770) (-5413.761) -- 0:03:52
864000 -- (-5410.722) (-5425.372) (-5403.688) [-5396.539] * (-5409.023) (-5416.423) (-5390.685) [-5395.467] -- 0:03:50
865000 -- (-5405.967) (-5413.339) [-5387.068] (-5406.083) * (-5411.673) (-5429.707) (-5405.660) [-5399.260] -- 0:03:48
Average standard deviation of split frequencies: 0.011014
866000 -- (-5412.250) [-5401.504] (-5411.863) (-5434.883) * [-5406.567] (-5419.163) (-5420.812) (-5408.630) -- 0:03:47
867000 -- (-5432.585) [-5407.437] (-5408.407) (-5421.600) * [-5396.754] (-5420.547) (-5405.329) (-5413.401) -- 0:03:45
868000 -- (-5429.747) [-5397.150] (-5405.250) (-5420.900) * [-5399.511] (-5422.171) (-5411.882) (-5425.717) -- 0:03:43
869000 -- (-5419.706) (-5388.835) (-5433.234) [-5418.568] * (-5401.110) (-5422.193) [-5410.968] (-5409.442) -- 0:03:42
870000 -- (-5414.475) [-5403.573] (-5410.375) (-5410.500) * (-5414.325) (-5412.577) (-5407.637) [-5408.032] -- 0:03:40
Average standard deviation of split frequencies: 0.010866
871000 -- [-5408.207] (-5405.245) (-5409.229) (-5432.327) * (-5414.378) (-5427.975) [-5404.093] (-5421.179) -- 0:03:38
872000 -- (-5425.333) [-5405.418] (-5415.957) (-5397.257) * [-5390.301] (-5428.164) (-5405.433) (-5412.576) -- 0:03:36
873000 -- [-5408.471] (-5416.624) (-5403.643) (-5407.580) * (-5419.479) (-5406.053) [-5398.228] (-5419.736) -- 0:03:35
874000 -- (-5404.302) (-5408.326) (-5415.740) [-5409.896] * [-5421.340] (-5409.070) (-5408.193) (-5419.349) -- 0:03:33
875000 -- (-5406.380) [-5425.524] (-5420.118) (-5414.009) * (-5422.400) [-5427.429] (-5406.843) (-5413.803) -- 0:03:31
Average standard deviation of split frequencies: 0.010850
876000 -- (-5409.635) (-5418.961) (-5417.515) [-5404.881] * (-5424.913) (-5409.312) [-5407.375] (-5394.397) -- 0:03:30
877000 -- (-5419.354) [-5401.751] (-5412.795) (-5419.907) * (-5426.712) [-5398.204] (-5407.231) (-5408.514) -- 0:03:28
878000 -- (-5407.015) [-5410.001] (-5425.712) (-5410.967) * (-5438.527) (-5416.748) (-5400.015) [-5400.481] -- 0:03:26
879000 -- [-5413.838] (-5435.194) (-5438.950) (-5431.724) * (-5420.825) [-5409.571] (-5416.455) (-5418.786) -- 0:03:24
880000 -- [-5399.176] (-5430.629) (-5425.158) (-5408.356) * (-5406.676) [-5412.324] (-5429.096) (-5406.275) -- 0:03:23
Average standard deviation of split frequencies: 0.011116
881000 -- [-5405.255] (-5417.974) (-5414.272) (-5402.746) * (-5403.110) (-5419.825) (-5410.792) [-5398.874] -- 0:03:21
882000 -- [-5411.913] (-5431.284) (-5418.814) (-5416.885) * (-5425.061) (-5418.724) [-5399.775] (-5411.169) -- 0:03:19
883000 -- (-5406.335) (-5423.095) (-5417.253) [-5407.343] * (-5436.408) (-5425.922) (-5408.354) [-5407.914] -- 0:03:18
884000 -- (-5430.864) [-5420.971] (-5405.385) (-5403.383) * (-5415.700) (-5407.108) [-5393.180] (-5418.323) -- 0:03:16
885000 -- [-5395.949] (-5418.308) (-5427.469) (-5426.838) * (-5410.415) (-5415.498) (-5402.576) [-5400.870] -- 0:03:14
Average standard deviation of split frequencies: 0.011124
886000 -- [-5410.134] (-5435.139) (-5421.900) (-5436.963) * (-5409.057) (-5417.878) [-5405.460] (-5421.365) -- 0:03:13
887000 -- [-5408.577] (-5420.939) (-5401.272) (-5403.886) * (-5411.703) (-5398.767) [-5396.975] (-5431.681) -- 0:03:11
888000 -- (-5415.866) (-5420.772) [-5403.127] (-5416.667) * (-5414.351) (-5407.744) [-5405.029] (-5422.789) -- 0:03:09
889000 -- (-5407.940) (-5421.137) (-5412.039) [-5399.340] * (-5429.032) [-5409.059] (-5408.979) (-5424.524) -- 0:03:08
890000 -- (-5425.560) (-5419.458) [-5406.626] (-5400.840) * (-5435.621) (-5415.388) [-5402.662] (-5422.421) -- 0:03:06
Average standard deviation of split frequencies: 0.011004
891000 -- (-5416.543) [-5409.347] (-5418.727) (-5431.393) * (-5429.578) [-5418.050] (-5421.623) (-5414.117) -- 0:03:04
892000 -- [-5397.652] (-5418.779) (-5429.956) (-5412.739) * (-5419.090) (-5412.784) (-5433.583) [-5405.538] -- 0:03:02
893000 -- (-5410.570) (-5402.861) (-5431.224) [-5403.144] * (-5411.602) (-5396.818) (-5408.634) [-5394.550] -- 0:03:01
894000 -- [-5405.966] (-5408.476) (-5415.635) (-5415.925) * [-5403.909] (-5409.023) (-5408.069) (-5410.907) -- 0:02:59
895000 -- (-5413.232) (-5409.247) [-5411.955] (-5421.630) * (-5422.515) [-5403.314] (-5403.115) (-5424.851) -- 0:02:57
Average standard deviation of split frequencies: 0.010987
896000 -- (-5406.587) (-5396.251) (-5406.634) [-5403.135] * (-5416.148) (-5410.077) (-5408.328) [-5408.127] -- 0:02:56
897000 -- (-5404.893) [-5392.613] (-5417.782) (-5408.876) * (-5415.376) (-5414.072) (-5408.306) [-5405.002] -- 0:02:54
898000 -- (-5408.299) (-5423.267) (-5416.721) [-5404.785] * (-5421.699) (-5396.081) [-5416.465] (-5406.892) -- 0:02:52
899000 -- [-5397.965] (-5420.034) (-5415.082) (-5412.135) * (-5424.243) (-5414.326) (-5403.088) [-5404.713] -- 0:02:51
900000 -- (-5411.419) [-5403.759] (-5433.240) (-5427.667) * (-5425.720) [-5408.837] (-5421.998) (-5410.415) -- 0:02:49
Average standard deviation of split frequencies: 0.010979
901000 -- (-5399.749) (-5407.507) (-5421.431) [-5413.097] * (-5409.520) (-5420.828) [-5405.519] (-5409.434) -- 0:02:47
902000 -- (-5414.651) (-5430.189) (-5410.879) [-5403.954] * (-5421.377) [-5404.372] (-5409.710) (-5407.174) -- 0:02:46
903000 -- [-5410.887] (-5407.584) (-5418.103) (-5401.303) * (-5429.427) [-5400.949] (-5423.778) (-5409.719) -- 0:02:44
904000 -- (-5423.545) (-5416.813) (-5416.304) [-5404.560] * (-5403.910) [-5404.069] (-5410.560) (-5411.711) -- 0:02:42
905000 -- (-5397.988) [-5407.690] (-5414.301) (-5415.768) * (-5418.950) (-5414.427) [-5404.038] (-5423.239) -- 0:02:40
Average standard deviation of split frequencies: 0.010721
906000 -- (-5422.414) [-5399.460] (-5413.410) (-5417.815) * (-5420.797) (-5419.368) [-5398.904] (-5430.458) -- 0:02:39
907000 -- (-5435.108) (-5397.094) [-5410.369] (-5399.428) * (-5420.405) [-5396.830] (-5419.972) (-5417.170) -- 0:02:37
908000 -- (-5433.120) (-5398.751) (-5410.003) [-5407.066] * (-5407.702) (-5409.170) [-5408.281] (-5416.334) -- 0:02:35
909000 -- (-5432.785) (-5398.133) [-5400.895] (-5420.046) * (-5419.677) (-5412.433) (-5412.603) [-5401.370] -- 0:02:34
910000 -- (-5417.701) (-5401.557) [-5399.116] (-5424.500) * (-5430.420) [-5395.814] (-5415.365) (-5410.597) -- 0:02:32
Average standard deviation of split frequencies: 0.010269
911000 -- (-5412.410) (-5416.755) [-5406.575] (-5418.918) * (-5425.064) [-5397.114] (-5417.737) (-5394.150) -- 0:02:30
912000 -- [-5403.411] (-5420.725) (-5416.944) (-5409.485) * (-5417.234) [-5405.192] (-5408.056) (-5426.055) -- 0:02:29
913000 -- (-5421.721) [-5399.189] (-5406.304) (-5412.547) * (-5400.142) (-5402.349) [-5405.878] (-5436.280) -- 0:02:27
914000 -- (-5415.444) (-5409.997) (-5397.453) [-5410.503] * [-5408.484] (-5401.757) (-5422.750) (-5424.211) -- 0:02:25
915000 -- (-5411.327) (-5423.830) (-5405.761) [-5405.181] * (-5404.582) [-5395.889] (-5414.840) (-5424.263) -- 0:02:23
Average standard deviation of split frequencies: 0.010173
916000 -- [-5416.016] (-5406.007) (-5404.405) (-5412.403) * (-5409.514) (-5411.870) [-5412.021] (-5435.638) -- 0:02:22
917000 -- (-5426.893) [-5403.632] (-5417.785) (-5416.771) * (-5417.813) (-5413.687) [-5400.965] (-5432.770) -- 0:02:20
918000 -- (-5423.119) (-5420.118) (-5430.657) [-5418.807] * (-5414.868) [-5401.441] (-5409.355) (-5416.646) -- 0:02:18
919000 -- (-5433.519) [-5400.601] (-5404.649) (-5419.018) * (-5418.596) [-5409.206] (-5403.754) (-5401.933) -- 0:02:17
920000 -- (-5405.712) (-5391.082) [-5396.571] (-5415.214) * [-5404.993] (-5410.110) (-5413.042) (-5414.989) -- 0:02:15
Average standard deviation of split frequencies: 0.010050
921000 -- (-5411.589) [-5403.945] (-5404.956) (-5406.512) * (-5430.451) [-5408.015] (-5420.385) (-5416.941) -- 0:02:13
922000 -- (-5412.873) (-5422.909) [-5400.141] (-5405.274) * [-5415.261] (-5412.785) (-5425.320) (-5404.636) -- 0:02:12
923000 -- [-5400.172] (-5417.162) (-5408.438) (-5406.269) * (-5404.907) (-5398.166) [-5415.403] (-5409.811) -- 0:02:10
924000 -- (-5409.683) (-5404.689) [-5390.431] (-5405.131) * (-5406.929) [-5403.834] (-5434.293) (-5411.295) -- 0:02:08
925000 -- (-5439.744) (-5410.114) (-5419.219) [-5403.154] * [-5405.824] (-5415.855) (-5418.995) (-5409.072) -- 0:02:06
Average standard deviation of split frequencies: 0.009945
926000 -- (-5414.240) [-5401.491] (-5412.093) (-5404.842) * (-5407.930) (-5416.183) (-5431.395) [-5401.768] -- 0:02:05
927000 -- (-5403.300) (-5413.378) [-5410.424] (-5413.610) * (-5406.655) (-5418.559) [-5408.378] (-5406.711) -- 0:02:03
928000 -- (-5422.437) (-5411.243) (-5418.870) [-5417.735] * [-5412.246] (-5424.497) (-5403.437) (-5413.668) -- 0:02:01
929000 -- (-5420.591) [-5403.150] (-5414.857) (-5418.729) * [-5403.483] (-5428.926) (-5395.908) (-5406.175) -- 0:02:00
930000 -- (-5425.016) [-5402.378] (-5421.604) (-5415.054) * (-5424.634) (-5420.226) [-5410.124] (-5413.379) -- 0:01:58
Average standard deviation of split frequencies: 0.010001
931000 -- (-5418.076) [-5399.769] (-5426.239) (-5418.965) * (-5431.286) [-5402.297] (-5420.050) (-5436.580) -- 0:01:56
932000 -- [-5401.960] (-5408.611) (-5420.711) (-5403.147) * (-5417.336) (-5412.126) (-5416.643) [-5426.042] -- 0:01:55
933000 -- (-5419.420) [-5418.629] (-5419.119) (-5426.598) * [-5397.050] (-5403.095) (-5408.202) (-5409.154) -- 0:01:53
934000 -- [-5407.599] (-5408.849) (-5423.388) (-5419.711) * [-5414.585] (-5424.281) (-5435.001) (-5421.634) -- 0:01:51
935000 -- (-5423.784) (-5428.466) [-5405.634] (-5412.847) * [-5400.061] (-5411.431) (-5415.015) (-5412.459) -- 0:01:50
Average standard deviation of split frequencies: 0.009862
936000 -- [-5408.850] (-5423.699) (-5416.366) (-5418.754) * [-5413.269] (-5409.147) (-5425.910) (-5402.782) -- 0:01:48
937000 -- (-5414.268) (-5425.085) (-5431.337) [-5406.646] * [-5401.371] (-5417.733) (-5429.502) (-5408.705) -- 0:01:46
938000 -- (-5410.890) (-5417.217) (-5410.439) [-5397.654] * (-5416.324) (-5400.187) (-5421.833) [-5404.694] -- 0:01:44
939000 -- (-5415.328) (-5401.668) [-5398.620] (-5408.238) * (-5400.592) [-5406.719] (-5405.331) (-5428.861) -- 0:01:43
940000 -- (-5406.771) (-5409.725) (-5428.998) [-5404.996] * (-5419.837) (-5409.832) [-5398.859] (-5424.366) -- 0:01:41
Average standard deviation of split frequencies: 0.009918
941000 -- (-5401.461) (-5425.885) [-5398.810] (-5416.828) * (-5415.474) (-5406.502) [-5403.046] (-5417.715) -- 0:01:39
942000 -- [-5406.147] (-5422.830) (-5419.637) (-5428.266) * (-5428.405) [-5411.040] (-5402.595) (-5433.522) -- 0:01:38
943000 -- [-5410.850] (-5405.757) (-5427.060) (-5424.438) * (-5413.299) (-5405.971) [-5398.235] (-5406.411) -- 0:01:36
944000 -- [-5401.163] (-5418.675) (-5429.372) (-5416.139) * (-5408.736) (-5411.647) (-5403.359) [-5403.988] -- 0:01:34
945000 -- (-5417.931) (-5411.238) [-5402.691] (-5404.284) * (-5408.294) (-5419.407) [-5412.157] (-5405.793) -- 0:01:33
Average standard deviation of split frequencies: 0.009989
946000 -- [-5409.181] (-5421.409) (-5397.863) (-5414.758) * (-5421.159) (-5425.437) (-5412.568) [-5397.216] -- 0:01:31
947000 -- (-5413.924) (-5418.633) (-5414.031) [-5409.375] * (-5427.038) (-5430.334) (-5421.911) [-5406.052] -- 0:01:29
948000 -- (-5420.030) (-5428.798) [-5429.596] (-5410.405) * (-5432.403) [-5408.680] (-5428.942) (-5399.331) -- 0:01:28
949000 -- (-5419.565) [-5410.087] (-5434.695) (-5416.480) * (-5414.272) (-5399.674) (-5417.128) [-5409.280] -- 0:01:26
950000 -- (-5419.509) (-5409.619) (-5411.144) [-5405.589] * (-5412.938) (-5416.405) [-5395.194] (-5408.670) -- 0:01:24
Average standard deviation of split frequencies: 0.010356
951000 -- (-5410.753) (-5421.354) (-5409.584) [-5416.918] * [-5407.021] (-5424.566) (-5422.182) (-5413.324) -- 0:01:22
952000 -- (-5416.544) (-5421.773) [-5392.303] (-5429.555) * (-5404.588) (-5420.310) (-5418.832) [-5390.458] -- 0:01:21
953000 -- (-5411.310) (-5423.313) [-5399.911] (-5429.036) * (-5429.387) (-5417.439) [-5408.206] (-5410.600) -- 0:01:19
954000 -- (-5411.164) (-5421.817) [-5408.884] (-5414.216) * (-5425.360) [-5415.447] (-5400.738) (-5400.260) -- 0:01:17
955000 -- [-5405.399] (-5400.883) (-5424.154) (-5415.658) * (-5428.925) (-5405.623) [-5411.651] (-5420.584) -- 0:01:16
Average standard deviation of split frequencies: 0.009885
956000 -- (-5408.479) [-5402.392] (-5407.091) (-5408.128) * (-5418.042) [-5416.676] (-5418.800) (-5415.280) -- 0:01:14
957000 -- (-5410.429) (-5419.004) [-5402.906] (-5421.559) * [-5391.858] (-5419.979) (-5414.842) (-5406.701) -- 0:01:12
958000 -- (-5411.846) (-5410.581) [-5400.157] (-5407.503) * [-5405.027] (-5406.051) (-5411.711) (-5414.135) -- 0:01:11
959000 -- [-5409.417] (-5406.306) (-5408.869) (-5394.251) * (-5411.823) (-5424.194) (-5397.393) [-5408.100] -- 0:01:09
960000 -- [-5412.860] (-5421.785) (-5423.459) (-5405.125) * (-5412.556) (-5426.039) (-5415.897) [-5412.899] -- 0:01:07
Average standard deviation of split frequencies: 0.009711
961000 -- (-5412.705) (-5410.035) (-5421.278) [-5397.601] * [-5413.581] (-5408.437) (-5432.433) (-5417.544) -- 0:01:06
962000 -- [-5408.212] (-5418.968) (-5433.518) (-5397.501) * (-5400.210) (-5406.591) (-5432.978) [-5403.708] -- 0:01:04
963000 -- (-5406.169) (-5415.804) (-5425.557) [-5407.891] * (-5425.229) [-5399.631] (-5416.520) (-5420.118) -- 0:01:02
964000 -- (-5415.361) [-5398.487] (-5441.187) (-5421.169) * (-5417.146) (-5413.813) [-5410.843] (-5424.640) -- 0:01:00
965000 -- [-5412.494] (-5404.316) (-5417.135) (-5418.094) * (-5407.239) (-5424.405) [-5404.397] (-5418.576) -- 0:00:59
Average standard deviation of split frequencies: 0.009533
966000 -- [-5399.901] (-5396.655) (-5412.451) (-5407.858) * (-5420.069) (-5408.130) [-5407.830] (-5415.833) -- 0:00:57
967000 -- (-5414.617) (-5421.413) (-5426.362) [-5409.661] * (-5421.954) (-5406.977) (-5426.605) [-5407.493] -- 0:00:55
968000 -- [-5404.822] (-5404.768) (-5437.490) (-5405.498) * (-5420.388) [-5399.915] (-5415.403) (-5404.611) -- 0:00:54
969000 -- (-5390.081) (-5421.370) [-5407.687] (-5407.285) * [-5416.303] (-5406.905) (-5404.261) (-5412.741) -- 0:00:52
970000 -- [-5396.112] (-5433.442) (-5415.323) (-5408.611) * (-5428.337) [-5401.389] (-5419.792) (-5402.830) -- 0:00:50
Average standard deviation of split frequencies: 0.009498
971000 -- [-5395.077] (-5411.382) (-5423.373) (-5409.122) * (-5417.020) (-5422.913) [-5408.678] (-5398.164) -- 0:00:49
972000 -- [-5399.035] (-5417.388) (-5409.856) (-5407.250) * (-5413.758) (-5421.881) (-5404.638) [-5391.578] -- 0:00:47
973000 -- [-5402.853] (-5411.526) (-5403.557) (-5410.862) * (-5409.264) [-5415.418] (-5420.736) (-5406.103) -- 0:00:45
974000 -- (-5411.536) (-5399.808) (-5423.570) [-5405.305] * (-5410.418) (-5426.486) [-5401.956] (-5406.366) -- 0:00:44
975000 -- (-5405.605) (-5403.162) (-5431.650) [-5400.551] * (-5409.931) (-5410.068) (-5406.268) [-5402.718] -- 0:00:42
Average standard deviation of split frequencies: 0.009649
976000 -- (-5402.913) [-5402.919] (-5418.550) (-5410.044) * (-5414.073) (-5417.165) (-5408.998) [-5400.719] -- 0:00:40
977000 -- (-5413.098) [-5410.183] (-5421.522) (-5420.439) * (-5422.303) (-5413.103) (-5413.164) [-5399.919] -- 0:00:38
978000 -- [-5411.337] (-5417.892) (-5428.193) (-5417.974) * [-5401.217] (-5403.651) (-5431.396) (-5429.663) -- 0:00:37
979000 -- [-5408.417] (-5409.668) (-5417.853) (-5402.954) * [-5403.383] (-5423.706) (-5461.739) (-5427.110) -- 0:00:35
980000 -- [-5416.399] (-5423.508) (-5417.501) (-5421.654) * (-5396.227) (-5400.564) [-5413.210] (-5448.474) -- 0:00:33
Average standard deviation of split frequencies: 0.009961
981000 -- [-5403.004] (-5412.504) (-5408.379) (-5411.814) * (-5424.410) (-5421.333) [-5406.748] (-5420.177) -- 0:00:32
982000 -- (-5406.486) [-5398.563] (-5410.619) (-5417.306) * (-5418.550) (-5405.508) (-5414.661) [-5407.862] -- 0:00:30
983000 -- (-5406.278) (-5403.747) [-5400.291] (-5424.645) * (-5419.365) (-5404.762) [-5393.180] (-5418.174) -- 0:00:28
984000 -- (-5420.893) (-5413.354) [-5407.282] (-5437.053) * (-5424.600) (-5419.370) [-5388.749] (-5410.608) -- 0:00:27
985000 -- (-5406.864) [-5398.474] (-5425.850) (-5422.276) * (-5420.956) (-5407.244) [-5398.281] (-5398.107) -- 0:00:25
Average standard deviation of split frequencies: 0.009862
986000 -- [-5401.497] (-5416.738) (-5417.122) (-5421.389) * [-5408.558] (-5400.535) (-5404.127) (-5413.643) -- 0:00:23
987000 -- [-5394.612] (-5422.678) (-5437.624) (-5408.549) * (-5411.809) [-5406.170] (-5408.869) (-5425.378) -- 0:00:22
988000 -- (-5408.708) (-5410.143) (-5436.105) [-5404.596] * (-5411.422) [-5407.116] (-5428.429) (-5445.718) -- 0:00:20
989000 -- [-5406.501] (-5412.543) (-5432.831) (-5415.931) * (-5413.982) [-5410.801] (-5411.559) (-5432.684) -- 0:00:18
990000 -- (-5420.422) (-5414.457) (-5409.811) [-5404.123] * (-5439.081) (-5415.877) (-5417.154) [-5414.218] -- 0:00:16
Average standard deviation of split frequencies: 0.010103
991000 -- [-5416.491] (-5426.086) (-5427.620) (-5405.574) * [-5405.041] (-5422.800) (-5423.715) (-5400.805) -- 0:00:15
992000 -- [-5408.360] (-5403.334) (-5409.165) (-5417.581) * [-5395.082] (-5410.054) (-5426.571) (-5411.357) -- 0:00:13
993000 -- (-5406.858) [-5400.491] (-5392.246) (-5414.951) * (-5409.436) [-5400.176] (-5412.241) (-5408.183) -- 0:00:11
994000 -- [-5401.602] (-5410.754) (-5396.935) (-5408.248) * [-5413.248] (-5401.465) (-5401.989) (-5416.215) -- 0:00:10
995000 -- [-5403.772] (-5409.410) (-5414.371) (-5412.660) * (-5420.443) [-5393.584] (-5420.554) (-5404.228) -- 0:00:08
Average standard deviation of split frequencies: 0.009653
996000 -- (-5414.979) (-5434.679) [-5406.438] (-5411.804) * (-5407.213) [-5397.588] (-5426.314) (-5418.949) -- 0:00:06
997000 -- [-5400.290] (-5398.557) (-5408.098) (-5422.417) * (-5418.486) (-5438.969) (-5434.769) [-5401.967] -- 0:00:05
998000 -- (-5415.607) (-5427.242) (-5424.854) [-5410.038] * [-5396.238] (-5405.007) (-5415.411) (-5405.334) -- 0:00:03
999000 -- [-5405.039] (-5435.010) (-5402.071) (-5396.633) * (-5408.584) (-5416.687) [-5409.999] (-5406.792) -- 0:00:01
1000000 -- (-5420.565) (-5416.371) (-5416.718) [-5408.061] * (-5399.541) [-5400.832] (-5416.583) (-5419.394) -- 0:00:00
Average standard deviation of split frequencies: 0.009531
Analysis completed in 28 mins 14 seconds
Analysis used 1691.92 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -5379.38
Likelihood of best state for "cold" chain of run 2 was -5380.15
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
30.2 % ( 25 %) Dirichlet(Revmat{all})
47.8 % ( 39 %) Slider(Revmat{all})
19.6 % ( 23 %) Dirichlet(Pi{all})
24.9 % ( 29 %) Slider(Pi{all})
28.7 % ( 27 %) Multiplier(Alpha{1,2})
47.2 % ( 25 %) Multiplier(Alpha{3})
39.4 % ( 24 %) Slider(Pinvar{all})
44.8 % ( 42 %) ExtSPR(Tau{all},V{all})
31.9 % ( 36 %) ExtTBR(Tau{all},V{all})
47.9 % ( 40 %) NNI(Tau{all},V{all})
38.2 % ( 44 %) ParsSPR(Tau{all},V{all})
27.1 % ( 27 %) Multiplier(V{all})
55.3 % ( 49 %) Nodeslider(V{all})
25.1 % ( 25 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
30.3 % ( 33 %) Dirichlet(Revmat{all})
49.1 % ( 38 %) Slider(Revmat{all})
19.4 % ( 28 %) Dirichlet(Pi{all})
25.6 % ( 24 %) Slider(Pi{all})
28.8 % ( 22 %) Multiplier(Alpha{1,2})
46.8 % ( 24 %) Multiplier(Alpha{3})
39.5 % ( 35 %) Slider(Pinvar{all})
45.4 % ( 50 %) ExtSPR(Tau{all},V{all})
32.1 % ( 38 %) ExtTBR(Tau{all},V{all})
47.8 % ( 44 %) NNI(Tau{all},V{all})
38.5 % ( 38 %) ParsSPR(Tau{all},V{all})
27.1 % ( 23 %) Multiplier(V{all})
55.0 % ( 55 %) Nodeslider(V{all})
25.2 % ( 31 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.58 0.29 0.13
2 | 166910 0.62 0.33
3 | 167092 166345 0.63
4 | 166446 166333 166874
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.59 0.30 0.13
2 | 166768 0.62 0.33
3 | 166567 166778 0.64
4 | 166520 166303 167064
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -5401.21
| 1 2 2 1 1 2 |
| |
| 1 1 2 |
| 1 1 2 1 2 2 1 |
| 1 1 2 1 2 11 2 2 1 1 |
| 12 * 1 1 222 12 2 22 2 12 |
|1 2 2 1 1 1 2 1 2|
|2 2 2 2 22 1 1 2 12 2 |
| 2 1 2 1 112 2 1 1 112 1|
| 1 2 2 2 22* 2 1* |
| 12 1 2 212 1 2 2 1 11 |
| 2 1 21 1 1 2 1 * |
| 2 |
| 1 1 |
| 2 1 1 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -5409.10
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -5389.41 -5422.61
2 -5392.23 -5425.07
--------------------------------------
TOTAL -5390.04 -5424.46
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.608359 0.002116 0.527358 0.704177 0.606125 1455.61 1478.30 1.000
r(A<->C){all} 0.059124 0.000186 0.034455 0.087697 0.058256 1023.07 1027.70 1.001
r(A<->G){all} 0.318973 0.000890 0.259806 0.375560 0.318133 652.83 692.20 1.000
r(A<->T){all} 0.075510 0.000151 0.051883 0.098534 0.075075 674.36 753.55 1.000
r(C<->G){all} 0.040584 0.000119 0.019060 0.061073 0.040089 948.73 1019.34 1.000
r(C<->T){all} 0.440024 0.000984 0.378942 0.501607 0.439446 621.18 671.35 1.000
r(G<->T){all} 0.065785 0.000104 0.046656 0.086111 0.065325 914.21 960.73 1.000
pi(A){all} 0.214903 0.000089 0.197058 0.233683 0.214472 982.12 1145.69 1.000
pi(C){all} 0.183806 0.000073 0.167651 0.200868 0.183721 1006.43 1028.57 1.000
pi(G){all} 0.270866 0.000096 0.251063 0.289258 0.270781 1131.00 1157.32 1.000
pi(T){all} 0.330426 0.000113 0.309922 0.352214 0.330287 857.98 926.02 1.000
alpha{1,2} 0.237765 0.001249 0.174566 0.307454 0.233910 1247.12 1289.95 1.000
alpha{3} 4.200756 2.257939 1.748914 7.232354 3.956183 1226.19 1303.40 1.000
pinvar{all} 0.501373 0.001323 0.431246 0.570610 0.504104 998.86 1115.36 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C1
2 -- C10
3 -- C11
4 -- C12
5 -- C13
6 -- C14
7 -- C15
8 -- C16
9 -- C17
10 -- C18
11 -- C19
12 -- C2
13 -- C20
14 -- C21
15 -- C22
16 -- C23
17 -- C24
18 -- C25
19 -- C26
20 -- C27
21 -- C28
22 -- C29
23 -- C3
24 -- C4
25 -- C5
26 -- C6
27 -- C7
28 -- C8
29 -- C9
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
-----------------------------------
1 -- .****************************
2 -- .*...........................
3 -- ..*..........................
4 -- ...*.........................
5 -- ....*........................
6 -- .....*.......................
7 -- ......*......................
8 -- .......*.....................
9 -- ........*....................
10 -- .........*...................
11 -- ..........*..................
12 -- ...........*.................
13 -- ............*................
14 -- .............*...............
15 -- ..............*..............
16 -- ...............*.............
17 -- ................*............
18 -- .................*...........
19 -- ..................*..........
20 -- ...................*.........
21 -- ....................*........
22 -- .....................*.......
23 -- ......................*......
24 -- .......................*.....
25 -- ........................*....
26 -- .........................*...
27 -- ..........................*..
28 -- ...........................*.
29 -- ............................*
30 -- ..........**.................
31 -- .*********..*****************
32 -- .....*..........***..**.*....
33 -- .****.*.*....***...**..*....*
34 -- .****...*....**....**..*....*
35 -- .........*..*..............*.
36 -- ......*........*.............
37 -- .********....**************.*
38 -- .............**.....*........
39 -- .....*..........**...*.......
40 -- .........................**..
41 -- .....*..........***..**.***..
42 -- .******.*....**************.*
43 -- .........*.................*.
44 -- .**.*...*....**....**..*....*
45 -- .....*.*........***..**.*....
46 -- .********....************...*
47 -- .............**..............
48 -- ..............*.....*........
49 -- .............*......*........
50 -- ..................*...*.*....
51 -- .........*..*................
52 -- ............*..............*.
53 -- ..................*...*......
54 -- ......................*.*....
55 -- .................*...*.......
56 -- ................*....*.......
57 -- .....*...........*...........
58 -- ..................*.....*....
59 -- .....*..........*............
60 -- ................**...*.......
61 -- .....*..........**...**.*....
62 -- .....*..........**...*..*....
63 -- .....*..........**...........
64 -- .....*...........*...*.......
65 -- ................**...........
66 -- .....*...............*.......
67 -- .....*..........**...**......
68 -- .....*..........***..*.......
69 -- .....*..........*....*.......
70 -- .....*..........***..*..*....
71 -- .....*..........***..**......
72 -- .....*..........***..**.*.*..
-----------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
30 3002 1.000000 0.000000 1.000000 1.000000 2
31 3002 1.000000 0.000000 1.000000 1.000000 2
32 3002 1.000000 0.000000 1.000000 1.000000 2
33 3002 1.000000 0.000000 1.000000 1.000000 2
34 3002 1.000000 0.000000 1.000000 1.000000 2
35 3002 1.000000 0.000000 1.000000 1.000000 2
36 3002 1.000000 0.000000 1.000000 1.000000 2
37 2992 0.996669 0.000942 0.996003 0.997335 2
38 2914 0.970686 0.004711 0.967355 0.974017 2
39 2687 0.895070 0.009893 0.888075 0.902065 2
40 2662 0.886742 0.026381 0.868088 0.905396 2
41 1733 0.577282 0.035332 0.552298 0.602265 2
42 1676 0.558294 0.033919 0.534310 0.582278 2
43 1521 0.506662 0.013662 0.497002 0.516322 2
44 1416 0.471686 0.000942 0.471019 0.472352 2
45 1233 0.410726 0.036274 0.385077 0.436376 2
46 1230 0.409727 0.036745 0.383744 0.435710 2
47 1008 0.335776 0.000000 0.335776 0.335776 2
48 994 0.331113 0.013191 0.321785 0.340440 2
49 975 0.324783 0.011777 0.316456 0.333111 2
50 849 0.282811 0.006124 0.278481 0.287142 2
51 752 0.250500 0.021670 0.235177 0.265823 2
52 729 0.242838 0.008009 0.237175 0.248501 2
53 655 0.218188 0.011777 0.209860 0.226516 2
54 649 0.216189 0.000471 0.215856 0.216522 2
55 607 0.202199 0.003298 0.199867 0.204530 2
56 598 0.199201 0.004711 0.195869 0.202532 2
57 597 0.198867 0.015546 0.187875 0.209860 2
58 594 0.197868 0.001884 0.196536 0.199201 2
59 591 0.196869 0.001413 0.195869 0.197868 2
60 589 0.196203 0.004240 0.193205 0.199201 2
61 581 0.193538 0.002355 0.191872 0.195203 2
62 578 0.192538 0.011306 0.184544 0.200533 2
63 564 0.187875 0.003769 0.185210 0.190540 2
64 548 0.182545 0.014133 0.172552 0.192538 2
65 547 0.182212 0.015546 0.171219 0.193205 2
66 541 0.180213 0.014604 0.169887 0.190540 2
67 527 0.175550 0.001413 0.174550 0.176549 2
68 523 0.174217 0.003298 0.171885 0.176549 2
69 523 0.174217 0.001413 0.173218 0.175217 2
70 522 0.173884 0.010364 0.166556 0.181213 2
71 514 0.171219 0.002827 0.169221 0.173218 2
72 337 0.112258 0.025910 0.093937 0.130580 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.002091 0.000002 0.000003 0.005017 0.001780 1.000 2
length{all}[2] 0.000735 0.000001 0.000000 0.002252 0.000502 1.000 2
length{all}[3] 0.000750 0.000001 0.000000 0.002196 0.000520 1.000 2
length{all}[4] 0.001173 0.000001 0.000000 0.003170 0.000912 1.000 2
length{all}[5] 0.000749 0.000001 0.000000 0.002232 0.000531 1.000 2
length{all}[6] 0.000730 0.000000 0.000000 0.002187 0.000516 1.000 2
length{all}[7] 0.000732 0.000001 0.000001 0.002171 0.000512 1.000 2
length{all}[8] 0.090145 0.000168 0.065608 0.115906 0.089495 1.000 2
length{all}[9] 0.001480 0.000001 0.000044 0.003392 0.001242 1.000 2
length{all}[10] 0.000734 0.000001 0.000000 0.002169 0.000511 1.002 2
length{all}[11] 0.000738 0.000001 0.000000 0.002200 0.000521 1.000 2
length{all}[12] 0.001479 0.000001 0.000010 0.003566 0.001237 1.000 2
length{all}[13] 0.002003 0.000002 0.000030 0.004367 0.001761 1.000 2
length{all}[14] 0.000745 0.000001 0.000000 0.002182 0.000507 1.000 2
length{all}[15] 0.000751 0.000001 0.000002 0.002191 0.000526 1.000 2
length{all}[16] 0.000736 0.000001 0.000000 0.002166 0.000509 1.000 2
length{all}[17] 0.001469 0.000001 0.000049 0.003419 0.001250 1.000 2
length{all}[18] 0.000743 0.000001 0.000000 0.002236 0.000508 1.001 2
length{all}[19] 0.003671 0.000003 0.000839 0.006815 0.003407 1.000 2
length{all}[20] 0.000755 0.000001 0.000000 0.002254 0.000522 1.000 2
length{all}[21] 0.000738 0.000001 0.000000 0.002182 0.000530 1.000 2
length{all}[22] 0.000759 0.000001 0.000000 0.002369 0.000516 1.000 2
length{all}[23] 0.000751 0.000001 0.000000 0.002245 0.000512 1.000 2
length{all}[24] 0.000728 0.000001 0.000000 0.002205 0.000503 1.000 2
length{all}[25] 0.000749 0.000001 0.000000 0.002243 0.000530 1.000 2
length{all}[26] 0.033693 0.000053 0.020315 0.048159 0.033058 1.001 2
length{all}[27] 0.080246 0.000130 0.059455 0.102444 0.079471 1.000 2
length{all}[28] 0.000763 0.000001 0.000000 0.002287 0.000514 1.000 2
length{all}[29] 0.001438 0.000001 0.000001 0.003532 0.001213 1.000 2
length{all}[30] 0.006315 0.000006 0.002175 0.011140 0.006004 1.000 2
length{all}[31] 0.055989 0.000095 0.037714 0.075811 0.054977 1.000 2
length{all}[32] 0.069827 0.000114 0.050664 0.091832 0.069044 1.000 2
length{all}[33] 0.016508 0.000024 0.007297 0.026114 0.016096 1.000 2
length{all}[34] 0.033066 0.000039 0.021144 0.045397 0.032559 1.000 2
length{all}[35] 0.104506 0.000210 0.077468 0.133858 0.103964 1.002 2
length{all}[36] 0.020554 0.000024 0.011802 0.030783 0.020107 1.000 2
length{all}[37] 0.017848 0.000043 0.006240 0.031288 0.017330 1.000 2
length{all}[38] 0.001466 0.000001 0.000014 0.003503 0.001246 1.000 2
length{all}[39] 0.001487 0.000001 0.000046 0.003568 0.001260 1.000 2
length{all}[40] 0.016674 0.000033 0.005972 0.028414 0.016149 1.000 2
length{all}[41] 0.014575 0.000032 0.003736 0.025136 0.014143 1.000 2
length{all}[42] 0.008603 0.000017 0.001699 0.016589 0.008016 1.000 2
length{all}[43] 0.001156 0.000001 0.000002 0.003223 0.000857 1.000 2
length{all}[44] 0.001373 0.000001 0.000004 0.003207 0.001161 0.999 2
length{all}[45] 0.010602 0.000023 0.001752 0.019906 0.010148 1.000 2
length{all}[46] 0.010955 0.000022 0.002635 0.020378 0.010466 1.001 2
length{all}[47] 0.000754 0.000001 0.000000 0.002393 0.000477 1.000 2
length{all}[48] 0.000722 0.000001 0.000002 0.002167 0.000515 1.000 2
length{all}[49] 0.000767 0.000001 0.000000 0.002275 0.000523 1.003 2
length{all}[50] 0.001022 0.000001 0.000000 0.002741 0.000779 1.000 2
length{all}[51] 0.000746 0.000001 0.000001 0.002344 0.000525 0.999 2
length{all}[52] 0.000753 0.000001 0.000003 0.002398 0.000544 0.999 2
length{all}[53] 0.000769 0.000001 0.000001 0.002264 0.000545 0.999 2
length{all}[54] 0.000688 0.000000 0.000001 0.002156 0.000449 0.999 2
length{all}[55] 0.000767 0.000001 0.000002 0.002447 0.000533 1.004 2
length{all}[56] 0.000728 0.000001 0.000001 0.002343 0.000545 1.005 2
length{all}[57] 0.000714 0.000000 0.000000 0.001923 0.000533 1.000 2
length{all}[58] 0.000704 0.000001 0.000001 0.002094 0.000467 1.000 2
length{all}[59] 0.000698 0.000001 0.000000 0.002077 0.000480 0.998 2
length{all}[60] 0.000727 0.000001 0.000001 0.002286 0.000514 0.999 2
length{all}[61] 0.000830 0.000001 0.000003 0.002368 0.000575 0.999 2
length{all}[62] 0.000720 0.000000 0.000002 0.002019 0.000517 0.999 2
length{all}[63] 0.000709 0.000000 0.000000 0.002196 0.000477 0.998 2
length{all}[64] 0.000714 0.000001 0.000002 0.002414 0.000462 1.000 2
length{all}[65] 0.000762 0.000001 0.000000 0.002249 0.000507 0.998 2
length{all}[66] 0.000730 0.000001 0.000001 0.002186 0.000505 0.998 2
length{all}[67] 0.000712 0.000001 0.000001 0.002137 0.000484 1.000 2
length{all}[68] 0.000719 0.000001 0.000002 0.002254 0.000477 1.001 2
length{all}[69] 0.000731 0.000001 0.000001 0.002186 0.000494 0.999 2
length{all}[70] 0.000789 0.000001 0.000000 0.002343 0.000559 1.001 2
length{all}[71] 0.000718 0.000001 0.000001 0.002022 0.000475 0.998 2
length{all}[72] 0.012152 0.000023 0.003556 0.021514 0.011689 0.997 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.009531
Maximum standard deviation of split frequencies = 0.036745
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.005
Clade credibility values:
/---------------------------------------------------------------------- C1 (1)
|
| /-------------------- C10 (2)
| |
| |-------------------- C11 (3)
| |
| |-------------------- C12 (4)
| |
| |-------------------- C13 (5)
| |
| |-------------------- C17 (9)
| |
| /---100---+ /---------- C21 (14)
| | | |
| | |----97---+---------- C22 (15)
| | | |
| | | \---------- C28 (21)
| | |
| | |-------------------- C27 (20)
| /---100---+ |
| | | |-------------------- C4 (24)
| | | |
| | | \-------------------- C9 (29)
| | |
| | | /---------- C15 (7)
| | \--------100--------+
| | \---------- C23 (16)
| |
+ | /---------- C14 (6)
| | |
| /----56---+ |---------- C24 (17)
| | | /----90---+
| | | | |---------- C25 (18)
| | | | |
| | | | \---------- C29 (22)
| | | |
| | | /---100---+-------------------- C26 (19)
| | | | |
| /---100---+ | | |-------------------- C3 (23)
| | | | | |
| | | \----58---+ \-------------------- C5 (25)
| | | |
| | | | /---------- C6 (26)
| | | \---------89--------+
| | | \---------- C7 (27)
|---100---+ |
| | \-------------------------------------------------- C16 (8)
| |
| | /---------- C18 (10)
| | /----51---+
| | | \---------- C8 (28)
| \------------------100------------------+
| \-------------------- C20 (13)
|
| /---------- C19 (11)
\----------------------------100----------------------------+
\---------- C2 (12)
Phylogram (based on average branch lengths):
/- C1 (1)
|
| / C10 (2)
| |
| | C11 (3)
| |
| |- C12 (4)
| |
| | C13 (5)
| |
| |- C17 (9)
| |
| /-----------+/ C21 (14)
| | ||
| | |+ C22 (15)
| | ||
| | |\ C28 (21)
| | |
| | | C27 (20)
| /-----+ |
| | | | C4 (24)
| | | |
| | | \- C9 (29)
| | |
| | | / C15 (7)
| | \-------+
| | \ C23 (16)
| |
+ | / C14 (6)
| | |
| /--+ | C24 (17)
| | | /+
| | | || C25 (18)
| | | ||
| | | |\ C29 (22)
| | | |
| | | /-------------------------+- C26 (19)
| | | | |
| /-----+ | | | C3 (23)
| | | | | |
| | | \----+ \ C5 (25)
| | | |
| | | | /------------- C6 (26)
| | | \-----+
| | | \------------------------------ C7 (27)
|--------------------+ |
| | \--------------------------------- C16 (8)
| |
| | / C18 (10)
| | /+
| | |\ C8 (28)
| \-------------------------------------+
| \- C20 (13)
|
| / C19 (11)
\-+
\- C2 (12)
|-----------------| 0.050 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3002 trees sampled):
50 % credible set contains 1501 trees
90 % credible set contains 2702 trees
95 % credible set contains 2852 trees
99 % credible set contains 2972 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Wed Nov 02 20:11:21 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.11 sec, SCORE=1000, Nseq=29, Len=585
C1 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDNEVVV
C2 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRESLDNEVVV
C3 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C4 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C5 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C6 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDKEVVV
C7 VNPILFVDQYGCDYTGCLAKGLEDYGECTLDEMKELFPVWRDSLGSDVIV
C8 VKSILFLDQYGCDYTGRLAKGLEDYGDCTLEEMKELFPVWCDSLDNEVVV
C9 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C10 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C11 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C12 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C13 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C14 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C15 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDNEVVV
C16 VKPVLFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWCDSLDKEVVV
C17 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C18 VKSILFLDQYGCDYTGRLAKGLEDYGDCTLEEMKELFPVWCDSLDNEVVV
C19 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRESLDNEVVV
C20 VKSILFLDQYGCDYTGRLAKGLEDYGDCTLEEMKELFPVWCDSLDNEVVV
C21 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C22 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C23 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDNEVVV
C24 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C25 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C26 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
C27 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C28 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLV
C29 VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVV
*:.:**:********* *********: **.***** *** :**..:*:*
C1 AWHVDRDPRAVMRLQTLATLRSIDYVGQPTEDVVDGDVVVREPAHLLAAD
C2 AWHVDRDPRAVMRLQTLATLRSIDYVGQPTEDVVDGDVVVRAPAHLLAAD
C3 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C4 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C5 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C6 AWHVDRDPRAVMRLQTLATIRSIDYVGQPTEDVVDGDVVVREPAHLLAAN
C7 AWQVVRDPRAVMRMQTLATIRSIEYVGQPVEDLVDGDVVMREPAHLLSAN
C8 AWHVDRDPRAVMRLQTLATIRSIGYVGQPTEDLVDGDVVVREPAHLLAAN
C9 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C10 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C11 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C12 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C13 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C14 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C15 AWHVDRDPRAVMRLQTLATVRSIDYVGQPTEDVVDGDVVVREPAHLLAAN
C16 AWHVDRDPRAVMRLQTLATVRSIDYVGQPTEDVVDGDVVVREPAHLLAAN
C17 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C18 AWHVDRDPRAVMRLQTLATIRSIGYVGQPTEDLVDGDVVVREPAHLLAAN
C19 AWHVDRDPRAVMRLQTLATLRSIDYVGQPTEDVVDGDVVVREPAHLLAAD
C20 AWHVDRDPRAVMRLQTLATVRCIGYVGQPTEDLVDGDVVVREPAHLLAAN
C21 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C22 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C23 AWHVDRDPRAVMRLQTLATVRSIDYVGQPTEDVVDGDVVVREPAHLLAAN
C24 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C25 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C26 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
C27 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C28 AWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAAN
C29 AWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPN
**:* *****.**:*****:*.* ***** **:******:* *****:.:
C1 AVVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCDF
C2 ALVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCDF
C3 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C4 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C5 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C6 AIVKRLPRLVETMLYADSSVTEFCYKTKLGDCGFITQFGYVDCCGDACDF
C7 AVVKRLPRLVEAMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCDF
C8 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDACDF
C9 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C10 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C11 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C12 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C13 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C14 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C15 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C16 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCNCGFITQFGYVDCCGDTCDF
C17 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C18 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDACDF
C19 ALVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCDF
C20 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDACDF
C21 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C22 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C23 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C24 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C25 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C26 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
C27 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C28 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDF
C29 AIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGF
*:*********:***:************* :***************:*.*
C1 RGWVPGNMLDGFPCPGCSKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C2 RGWVPGNMLDGFPCPGCSKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C3 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C4 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C5 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C6 RGWVPGNMMDGFPCPGCSRSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C7 RGWVPGNMMDGFPCPGCSKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C8 RGWVPGNMMDGFLCPGCSKSYMPWELEAQSSGVIPKGGVLFTQSTDTVNR
C9 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C10 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C11 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C12 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C13 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C14 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C15 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C16 RGWVPGNMMDGFPCPGCSKNYMPWELEAQSSGVIPEGAVLFTVSNDTVNR
C17 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C18 RGWVPGNMMDGFLCPGCSKSYMPWELEAQSSGVIPKGGVLFTQSTDTVNR
C19 RGWVPGNMLDGFPCPGCSKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C20 RGWVPGNMMDGFLCPGCSKSYMPWELEAQSSGVIPKGGVLFTQSTDTVNR
C21 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C22 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C23 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C24 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C25 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C26 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C27 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C28 RGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
C29 RGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNR
****.***:*** **** :.***************:*.**** *.*****
C1 EAFKLYGHAVVPFGSAVYWSPYPGMWLPVVWSSVKSYSGLTYTGVVGCKA
C2 EAFKLYGHAVVPFGSAVYWSPYPGMWLPVVWSSVKSYSGLTYTGVVGCKA
C3 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C4 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C5 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C6 ESFKLYGHAVAPFGSAVYWSPYPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C7 ESFKLYGHAVVPFGSAAYWSPYPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C8 ESFKLYGHAVVPFGSAVYWSPYPGMWLPVIWSSVKSYADLTYTGVVGCKA
C9 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C10 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C11 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C12 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C13 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C14 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C15 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C16 ESFKIYGHAVVPFGGCVYWSPYPGMWLPVIWSSVKSYSGLTYTGAVGCKA
C17 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C18 ESFKLYGHAVVPFGSAVYWSPYPGMWLPVIWSSVKSYADLTYTGVVGCKA
C19 EAFKLYGHAVVPFGSAVYWSPYPGMWLPVVWSSVKSYSGLTYTGVVGCKA
C20 ESFKLYGHAVVPFGSAVYWSPYPGMWLPVIWSSVKSYADLTYTGVVGCKA
C21 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C22 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C23 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C24 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C25 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C26 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
C27 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C28 ESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKA
C29 ESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKA
*:**:*****.***...**** *******:*******: *****.*****
C1 IVQETDAICRSLYMDYVQHKCGNLDQRATLGLDDVYHRQLLVNRGDYSLL
C2 IVQETDAICRSLYMDYVQHKCGNLDQRATLGLDDVYHRQLLVNRGDYSLL
C3 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C4 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C5 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C6 IVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C7 IVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C8 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C9 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C10 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C11 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C12 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C13 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C14 IVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLL
C15 IVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C16 IVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C17 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C18 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C19 IVQETDAICRSLYMDYVQHKCGNLDQRATLGLDDVYHRQLLVNRGDYSLL
C20 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C21 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C22 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C23 IVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C24 IVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLL
C25 IVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLL
C26 IVQETDAICRFLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C27 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C28 IVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
C29 IVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLL
*****:**** *************:*** **:******************
C1 LENVDLFVKRRAEFACKFATCGDGFVPLLLDGLVPRSYYLIKSGQAYTSM
C2 LENVDLFVKRRAEFACKFATCGDGFVPLLLDGLVPRSYYLIKSGQAYTSM
C3 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
C4 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C5 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
C6 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C7 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C8 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C9 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C10 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C11 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C12 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C13 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C14 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
C15 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSV
C16 LENLDLFIKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSV
C17 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C18 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C19 LENVDLFVKRRAEFACKFATCGDGFVPLLLDGLVPRSYYLIKSGQAYTSM
C20 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C21 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C22 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C23 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSV
C24 LENVDLFVKRRAEFACKFATCGDGLAPLLLDGLVPRSYYLIKSGQAFTSL
C25 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
C26 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
C27 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C28 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSM
C29 LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSL
***:***:****************:.********************:**:
C1 MVNFSHEVIDMCMDMALLFMHDVKVATKYVKKFTGKLAVRFKALGVAVVR
C2 MVNFSHEVIDMCMDMALLFMHDVKVATKYVKKFTGKLAVRFKALGVAVVR
C3 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C4 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C5 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C6 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C7 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C8 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C9 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C10 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C11 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C12 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C13 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C14 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C15 MVNFSREVIDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C16 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C17 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKAWGVAVVR
C18 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C19 MVNFSHEVIDMCMDMALLFMHDVKVATKYVKKFTGKLAVRFKALGVAVVR
C20 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C21 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C22 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C23 MVNFSREVIDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C24 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C25 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
C26 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKVAVRFKALGIAVVR
C27 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C28 MVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVR
C29 MVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVR
*****:** ***********************.***:****** *:****
C1 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEAPELVKNFV
C2 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEAPELVKNFV
C3 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C4 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C5 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C6 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C7 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C8 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFLSDVPELVKNFV
C9 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C10 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C11 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C12 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C13 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C14 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C15 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C16 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFVQDVPELVKNFV
C17 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C18 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFLSDVPELVKNFV
C19 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEAPELVKNFV
C20 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFLSDVPELVKNFV
C21 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C22 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C23 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C24 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C25 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C26 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFIQEVPELVKNFV
C27 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C28 KITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
C29 KITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFV
*********** ********************** ***:.:.********
C1 AKFRAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKFYEVVQKSLSAY
C2 AKFRAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C3 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C4 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C5 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C6 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C7 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C8 DKFKVFFKVLIDSMSVSVLSGLTVVKTASNRVCLAGCKVYEVVQKRLSAY
C9 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C10 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C11 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C12 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C13 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C14 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C15 DKFKAFFKVLIDSMSVTILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C16 DKFKAFFKVLIDSMSVSILSGLTVVKAASNRVCLAGSKVYAVVQKSLSAY
C17 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C18 DKFKVFFKVLIDSMSVSVLSGLTVVKTASNRVCLAGCKVYEVVQKRLSAY
C19 AKFRAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C20 DKFKVFFKVLIDSMSVSVLSGLTVVKTASNRVCLAGCKVYEVVQKRLSAY
C21 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C22 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C23 DKFKAFFKVLIDSMSVTILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C24 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C25 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C26 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
C27 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C28 DKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAY
C29 DKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAY
**:.***********::********:*********.*.* **** *.**
C1 VLPVGCSEATCLVGESEPAVFEDDVVGVVKTPLTYQGCCKPPTSFEKICI
C2 VLPVGCSEATCLVGESEPAVFEDDVVGVVKTPLTYQGCCKPPTSFEKICI
C3 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C4 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C5 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C6 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKVPLTYQGCCKPPTSFEKICI
C7 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C8 VMPVGCNEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCKPPTSFEKICV
C9 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C10 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C11 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C12 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C13 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C14 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C15 VLPVGCSEATCLVGESEPAVFEDDVVDVVKAPLIYQGCCKPPTSFEKICI
C16 VMPVGCSEATCLVGETGPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C17 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C18 VMPVGCNEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCKPPTSFEKICV
C19 VLPVGCSEATCLVGESEPAVFEDDVVGVVKTPLTYQGCCKPPTSFEKICI
C20 VMPVGCNEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCKPPTSFEKICV
C21 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C22 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C23 VLPVGCSEATCLVGESEPAVFEDDVVDVVKAPLIYQGCCKPPTSFEKICI
C24 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C25 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C26 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
C27 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C28 VMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICI
C29 IMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICI
::****.******** ***.*****.***.** ********:******:
C1 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C2 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C3 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C4 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C5 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C6 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C7 VDKLYMAKCGDQFYPLVVDNDTVGVLDQCWRFPCA
C8 VDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCA
C9 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C10 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C11 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C12 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C13 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C14 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C15 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C16 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C17 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C18 VDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCA
C19 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C20 VDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCA
C21 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C22 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C23 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C24 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C25 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C26 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C27 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C28 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
C29 VDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
***************:******:************
-- Starting log on Thu Nov 03 00:45:34 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/codeml,A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C1 1755 sites
reading seq# 2 C2 1755 sites
reading seq# 3 C3 1755 sites
reading seq# 4 C4 1755 sites
reading seq# 5 C5 1755 sites
reading seq# 6 C6 1755 sites
reading seq# 7 C7 1755 sites
reading seq# 8 C8 1755 sites
reading seq# 9 C9 1755 sites
reading seq#10 C10 1755 sites
reading seq#11 C11 1755 sites
reading seq#12 C12 1755 sites
reading seq#13 C13 1755 sites
reading seq#14 C14 1755 sites
reading seq#15 C15 1755 sites
reading seq#16 C16 1755 sites
reading seq#17 C17 1755 sites
reading seq#18 C18 1755 sites
reading seq#19 C19 1755 sites
reading seq#20 C20 1755 sites
reading seq#21 C21 1755 sites
reading seq#22 C22 1755 sites
reading seq#23 C23 1755 sites
reading seq#24 C24 1755 sites
reading seq#25 C25 1755 sites
reading seq#26 C26 1755 sites
reading seq#27 C27 1755 sites
reading seq#28 C28 1755 sites
reading seq#29 C29 1755 sitesns = 29 ls = 1755
Reading sequences, sequential format..
Reading seq # 1: C1
Reading seq # 2: C2
Reading seq # 3: C3
Reading seq # 4: C4
Reading seq # 5: C5
Reading seq # 6: C6
Reading seq # 7: C7
Reading seq # 8: C8
Reading seq # 9: C9
Reading seq #10: C10
Reading seq #11: C11
Reading seq #12: C12
Reading seq #13: C13
Reading seq #14: C14
Reading seq #15: C15
Reading seq #16: C16
Reading seq #17: C17
Reading seq #18: C18
Reading seq #19: C19
Reading seq #20: C20
Reading seq #21: C21
Reading seq #22: C22
Reading seq #23: C23
Reading seq #24: C24
Reading seq #25: C25
Reading seq #26: C26
Reading seq #27: C27
Reading seq #28: C28
Reading seq #29: C29
Sequences read..
Counting site patterns.. 0:00
Compressing, 354 patterns at 585 / 585 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 354 patterns at 585 / 585 sites (100.0%), 0:00
Counting codons..
3248 bytes for distance
345504 bytes for conP
31152 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(1, (((((10, 11, 12, 13, 17, (21, 22, 28), 27, 4, 9), (15, 23)), (((14, 24, 25, 29), 26, 3, 5), (6, 7))), 16), ((18, 8), 20)), (19, 2)); MP score: 566
2591280 bytes for conP, adjusted
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
33
0.065820 0.042962 0.061691 0.066191 0.096402 0.100766 0.030561 0.033509 0.051528 0.104102 0.044923 0.037855 0.104376 0.069792 0.072268 0.085489 0.045938 0.027419 0.043475 0.022518 0.019609 0.020936 0.024078 0.091335 0.020913 0.038292 0.106124 0.086177 0.092049 0.055037 0.037830 0.031248 0.015958 0.052815 0.083226 0.079831 0.089580 0.048709 0.078954 0.107837 0.031001 0.046354 0.030432 0.300000 0.660902 0.300878
ntime & nrate & np: 43 2 46
Bounds (np=46):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 12.218453
np = 46
lnL0 = -6848.857938
Iterating by ming2
Initial: fx= 6848.857938
x= 0.06582 0.04296 0.06169 0.06619 0.09640 0.10077 0.03056 0.03351 0.05153 0.10410 0.04492 0.03785 0.10438 0.06979 0.07227 0.08549 0.04594 0.02742 0.04348 0.02252 0.01961 0.02094 0.02408 0.09133 0.02091 0.03829 0.10612 0.08618 0.09205 0.05504 0.03783 0.03125 0.01596 0.05281 0.08323 0.07983 0.08958 0.04871 0.07895 0.10784 0.03100 0.04635 0.03043 0.30000 0.66090 0.30088
1 h-m-p 0.0000 0.0000 4346.3143 ++ 6334.163612 m 0.0000 51 | 1/46
2 h-m-p 0.0000 0.0000 4170.6260 ++ 6312.647693 m 0.0000 100 | 2/46
3 h-m-p 0.0000 0.0000 10045.8124 ++ 6294.989924 m 0.0000 149 | 3/46
4 h-m-p 0.0000 0.0000 420930000.5312
h-m-p: 1.88553667e-11 9.42768336e-11 4.20930001e+08 6294.989924
.. | 3/46
5 h-m-p 0.0000 0.0000 2583.1899 ++ 6174.264522 m 0.0000 244 | 4/46
6 h-m-p 0.0000 0.0000 13570.4546 ++ 6138.835349 m 0.0000 293 | 5/46
7 h-m-p 0.0000 0.0000 14932.5721 ++ 6095.043693 m 0.0000 342 | 6/46
8 h-m-p 0.0000 0.0000 511163.9174 ++ 6022.640466 m 0.0000 391 | 7/46
9 h-m-p 0.0000 0.0000 94695.7365 ++ 6020.830788 m 0.0000 440 | 8/46
10 h-m-p 0.0000 0.0000 6988.3605 ++ 5999.504210 m 0.0000 489 | 9/46
11 h-m-p 0.0000 0.0000 10422.4385 ++ 5939.946453 m 0.0000 538 | 10/46
12 h-m-p 0.0000 0.0000 1450029097.1301
h-m-p: 1.09841667e-11 5.49208335e-11 1.45002910e+09 5939.946453
.. | 10/46
13 h-m-p 0.0000 0.0000 2193.5129 ++ 5854.179682 m 0.0000 633 | 10/46
14 h-m-p 0.0000 0.0000 166199.6100 +CYCYCCC 5830.781566 6 0.0000 693 | 10/46
15 h-m-p 0.0000 0.0000 23715.4474 +CYCYCCC 5819.989328 6 0.0000 753 | 10/46
16 h-m-p 0.0000 0.0000 110117.9604 +YCYCCC 5817.593191 5 0.0000 811 | 10/46
17 h-m-p 0.0000 0.0000 620018.9264 ++ 5806.092306 m 0.0000 860 | 11/46
18 h-m-p 0.0000 0.0000 58759.3548 ++ 5784.651784 m 0.0000 909 | 12/46
19 h-m-p 0.0000 0.0000 579500.6473 ++ 5736.929696 m 0.0000 958 | 13/46
20 h-m-p 0.0000 0.0000 8852.3033 ++ 5695.432651 m 0.0000 1007 | 14/46
21 h-m-p 0.0000 0.0000 8162.0017 ++ 5692.403505 m 0.0000 1056 | 15/46
22 h-m-p 0.0000 0.0000 42450.5247 ++ 5628.693668 m 0.0000 1105 | 16/46
23 h-m-p 0.0000 0.0000 20582.5082 ++ 5627.481870 m 0.0000 1154 | 17/46
24 h-m-p 0.0000 0.0000 17475.3360 ++ 5624.114128 m 0.0000 1203 | 18/46
25 h-m-p 0.0000 0.0000 6254.3114 ++ 5532.471332 m 0.0000 1252 | 18/46
26 h-m-p 0.0000 0.0000 1772.0612 YCYCCC 5531.638172 5 0.0000 1309 | 18/46
27 h-m-p 0.0000 0.0003 613.6556 ++CCYCC 5474.066465 4 0.0002 1368 | 18/46
28 h-m-p 0.0001 0.0004 368.4072 CCCC 5468.446004 3 0.0001 1423 | 18/46
29 h-m-p 0.0000 0.0002 382.8454 +YCYCCC 5463.427091 5 0.0001 1481 | 18/46
30 h-m-p 0.0001 0.0003 213.7915 +YCC 5460.523111 2 0.0002 1534 | 18/46
31 h-m-p 0.0001 0.0004 163.8988 YCCCC 5458.634706 4 0.0001 1590 | 18/46
32 h-m-p 0.0001 0.0007 111.3878 YCCC 5456.035994 3 0.0003 1644 | 18/46
33 h-m-p 0.0002 0.0010 65.3772 +YYCCC 5449.734782 4 0.0006 1700 | 18/46
34 h-m-p 0.0000 0.0001 221.1777 +YYYYYCCCC 5445.858555 8 0.0001 1761 | 18/46
35 h-m-p 0.0000 0.0001 229.6965 ++ 5443.644817 m 0.0001 1810 | 18/46
36 h-m-p 0.0000 0.0000 194.7847
h-m-p: 4.95651521e-22 2.47825760e-21 1.94784665e+02 5443.644817
.. | 18/46
37 h-m-p 0.0000 0.0000 58817.8274 --YCYYYCC 5433.771678 6 0.0000 1915 | 18/46
38 h-m-p 0.0000 0.0000 2219.0883 CYYCC 5431.209327 4 0.0000 1970 | 18/46
39 h-m-p 0.0000 0.0000 1097.6701 ++ 5412.280170 m 0.0000 2019 | 18/46
40 h-m-p 0.0000 0.0000 4622.1488 +YYCCCC 5408.847595 5 0.0000 2077 | 18/46
41 h-m-p 0.0000 0.0000 6574.7281 +YYCCC 5388.213590 4 0.0000 2134 | 18/46
42 h-m-p 0.0000 0.0000 61724.1383 +CYYC 5383.629372 3 0.0000 2189 | 18/46
43 h-m-p 0.0000 0.0000 732.7722 +YYCYCCC 5377.014536 6 0.0000 2248 | 18/46
44 h-m-p 0.0000 0.0000 9051.2381 +YYYYC 5373.931127 4 0.0000 2302 | 18/46
45 h-m-p 0.0000 0.0000 8641.4832 +YYYCYCCC 5362.110470 7 0.0000 2362 | 18/46
46 h-m-p 0.0000 0.0000 4906.3395 +YYCCC 5359.227699 4 0.0000 2418 | 18/46
47 h-m-p 0.0000 0.0000 1737.2450 +YCYC 5357.727409 3 0.0000 2472 | 18/46
48 h-m-p 0.0000 0.0000 1104.7598 +YCCC 5355.909430 3 0.0000 2527 | 18/46
49 h-m-p 0.0000 0.0000 2481.7098 CCCC 5353.596807 3 0.0000 2582 | 18/46
50 h-m-p 0.0000 0.0003 846.4174 +CCCC 5343.139202 3 0.0001 2638 | 18/46
51 h-m-p 0.0000 0.0001 1473.4199 +YYCCCC 5331.660544 5 0.0001 2696 | 18/46
52 h-m-p 0.0001 0.0006 1255.5479 +YCYC 5304.144749 3 0.0003 2750 | 18/46
53 h-m-p 0.0001 0.0003 955.1544 +YYCCC 5284.103988 4 0.0002 2806 | 18/46
54 h-m-p 0.0001 0.0004 707.3461 YCYC 5276.221920 3 0.0002 2859 | 18/46
55 h-m-p 0.0001 0.0004 553.1052 YCCCC 5270.566233 4 0.0001 2915 | 18/46
56 h-m-p 0.0001 0.0005 169.0845 CCCC 5269.548551 3 0.0001 2970 | 18/46
57 h-m-p 0.0005 0.0045 43.5969 YC 5269.354628 1 0.0002 3020 | 18/46
58 h-m-p 0.0008 0.0039 13.4525 CC 5269.337089 1 0.0002 3071 | 18/46
59 h-m-p 0.0003 0.0233 8.2775 CC 5269.311829 1 0.0004 3122 | 18/46
60 h-m-p 0.0008 0.0232 3.9149 YC 5269.145274 1 0.0019 3172 | 18/46
61 h-m-p 0.0004 0.0050 20.7465 +YCC 5267.857396 2 0.0011 3225 | 18/46
62 h-m-p 0.0001 0.0007 127.1727 +YCCC 5260.818225 3 0.0006 3280 | 18/46
63 h-m-p 0.0000 0.0001 203.0688 ++ 5259.049971 m 0.0001 3329 | 18/46
64 h-m-p 0.0024 0.0400 8.1979 CCC 5258.981274 2 0.0008 3382 | 18/46
65 h-m-p 0.0023 0.0984 2.7576 +YCCC 5255.829295 3 0.0209 3437 | 18/46
66 h-m-p 0.0005 0.0030 108.7754 YCCC 5248.487794 3 0.0011 3491 | 18/46
67 h-m-p 0.1766 0.8832 0.4120 +CYCCC 5236.968966 4 0.7671 3548 | 18/46
68 h-m-p 0.2171 1.0855 0.3140 +YYYYCCCC 5231.327196 7 0.8841 3636 | 18/46
69 h-m-p 0.4111 2.0555 0.5316 YCCC 5227.499798 3 0.7376 3718 | 18/46
70 h-m-p 0.8850 4.4250 0.1688 YCCCC 5224.736738 4 1.7398 3802 | 18/46
71 h-m-p 0.4881 2.4405 0.0882 YCCC 5223.979867 3 1.1805 3884 | 18/46
72 h-m-p 1.6000 8.0000 0.0410 CYC 5223.527902 2 1.9085 3964 | 18/46
73 h-m-p 1.1712 5.8558 0.0520 CCCC 5223.274491 3 1.4894 4047 | 18/46
74 h-m-p 1.6000 8.0000 0.0027 CC 5223.197542 1 1.7449 4126 | 18/46
75 h-m-p 1.3034 8.0000 0.0036 CC 5223.157174 1 2.0902 4205 | 18/46
76 h-m-p 1.6000 8.0000 0.0017 CCC 5223.138427 2 2.0079 4286 | 18/46
77 h-m-p 1.6000 8.0000 0.0011 CC 5223.131246 1 2.3686 4365 | 18/46
78 h-m-p 1.6000 8.0000 0.0004 +YC 5223.120366 1 4.3054 4444 | 18/46
79 h-m-p 0.2820 8.0000 0.0067 +YC 5223.106633 1 2.7337 4523 | 18/46
80 h-m-p 1.6000 8.0000 0.0005 CC 5223.101069 1 2.0150 4602 | 18/46
81 h-m-p 0.7552 8.0000 0.0013 +YC 5223.098239 1 2.2573 4681 | 18/46
82 h-m-p 0.9755 8.0000 0.0030 YC 5223.097620 1 2.0096 4759 | 18/46
83 h-m-p 1.6000 8.0000 0.0004 YC 5223.097115 1 3.7272 4837 | 18/46
84 h-m-p 1.6000 8.0000 0.0002 +YC 5223.096224 1 4.1696 4916 | 18/46
85 h-m-p 0.7554 8.0000 0.0011 +YC 5223.095808 1 1.9413 4995 | 18/46
86 h-m-p 1.6000 8.0000 0.0001 C 5223.095736 0 1.7963 5072 | 18/46
87 h-m-p 1.6000 8.0000 0.0000 +Y 5223.095688 0 4.2089 5150 | 18/46
88 h-m-p 1.6000 8.0000 0.0001 +Y 5223.095567 0 5.3749 5228 | 18/46
89 h-m-p 1.6000 8.0000 0.0001 Y 5223.095431 0 3.2636 5305 | 18/46
90 h-m-p 1.6000 8.0000 0.0001 C 5223.095401 0 1.6397 5382 | 18/46
91 h-m-p 1.6000 8.0000 0.0000 C 5223.095398 0 1.4514 5459 | 18/46
92 h-m-p 1.6000 8.0000 0.0000 C 5223.095397 0 1.6333 5536 | 18/46
93 h-m-p 1.6000 8.0000 0.0000 C 5223.095397 0 2.0918 5613 | 18/46
94 h-m-p 1.6000 8.0000 0.0000 C 5223.095397 0 2.3844 5690 | 18/46
95 h-m-p 1.6000 8.0000 0.0000 Y 5223.095397 0 0.6926 5767 | 18/46
96 h-m-p 1.6000 8.0000 0.0000 C 5223.095397 0 1.9905 5844 | 18/46
97 h-m-p 1.6000 8.0000 0.0000 Y 5223.095397 0 0.7818 5921 | 18/46
98 h-m-p 1.6000 8.0000 0.0000 +C 5223.095397 0 6.6514 5999 | 18/46
99 h-m-p 1.1870 8.0000 0.0000 Y 5223.095397 0 0.1682 6076 | 18/46
100 h-m-p 0.2030 8.0000 0.0000 ------Y 5223.095397 0 0.0000 6159
Out..
lnL = -5223.095397
6160 lfun, 18480 eigenQcodon, 529760 P(t)
end of tree file.
Time used: 5:22
Model 2: PositiveSelection
TREE # 1
(1, (((((10, 11, 12, 13, 17, (21, 22, 28), 27, 4, 9), (15, 23)), (((14, 24, 25, 29), 26, 3, 5), (6, 7))), 16), ((18, 8), 20)), (19, 2)); MP score: 566
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
33
0.094771 0.064558 0.103732 0.087909 0.015851 0.031144 0.094343 0.102792 0.036427 0.020266 0.082954 0.060766 0.035879 0.037727 0.057647 0.057019 0.095195 0.055801 0.036031 0.074893 0.108445 0.031471 0.076074 0.061482 0.092586 0.059323 0.068868 0.074627 0.106548 0.101302 0.061773 0.030981 0.065536 0.010513 0.035359 0.059837 0.011480 0.041243 0.032603 0.042400 0.075582 0.012412 0.013760 3.456407 1.612048 0.269414 0.326491 1.495957
ntime & nrate & np: 43 3 48
Bounds (np=48):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 4.517279
np = 48
lnL0 = -6516.018777
Iterating by ming2
Initial: fx= 6516.018777
x= 0.09477 0.06456 0.10373 0.08791 0.01585 0.03114 0.09434 0.10279 0.03643 0.02027 0.08295 0.06077 0.03588 0.03773 0.05765 0.05702 0.09520 0.05580 0.03603 0.07489 0.10845 0.03147 0.07607 0.06148 0.09259 0.05932 0.06887 0.07463 0.10655 0.10130 0.06177 0.03098 0.06554 0.01051 0.03536 0.05984 0.01148 0.04124 0.03260 0.04240 0.07558 0.01241 0.01376 3.45641 1.61205 0.26941 0.32649 1.49596
1 h-m-p 0.0000 0.0000 6624.6528 ++ 6120.983689 m 0.0000 53 | 1/48
2 h-m-p 0.0000 0.0000 2997.2972 ++ 6077.374524 m 0.0000 104 | 2/48
3 h-m-p 0.0000 0.0000 32006.1350 ++ 6013.319539 m 0.0000 155 | 3/48
4 h-m-p 0.0000 0.0000 17573.8438 ++ 5879.923635 m 0.0000 206 | 4/48
5 h-m-p 0.0000 0.0000 381056.6567 ++ 5842.399677 m 0.0000 257 | 5/48
6 h-m-p 0.0000 0.0000 32082.0501 ++ 5823.481981 m 0.0000 308 | 6/48
7 h-m-p 0.0000 0.0000 12529.6566 ++ 5792.772222 m 0.0000 359 | 7/48
8 h-m-p 0.0000 0.0000 17152.3874 ++ 5676.242850 m 0.0000 410 | 8/48
9 h-m-p 0.0000 0.0000 65214.5317 ++ 5671.517094 m 0.0000 461 | 9/48
10 h-m-p 0.0000 0.0000 83992.6972 ++ 5647.914117 m 0.0000 512 | 10/48
11 h-m-p 0.0000 0.0000 14329.5111 ++ 5607.344015 m 0.0000 563 | 11/48
12 h-m-p 0.0000 0.0000 8722.8892 ++ 5578.069092 m 0.0000 614 | 12/48
13 h-m-p 0.0000 0.0000 7100.6970 ++ 5569.513623 m 0.0000 665 | 13/48
14 h-m-p 0.0000 0.0000 54309.1906 ++ 5509.332652 m 0.0000 716 | 14/48
15 h-m-p 0.0000 0.0000 29069.7223 ++ 5501.449936 m 0.0000 767 | 15/48
16 h-m-p 0.0000 0.0000 11356.1505 ++ 5499.144101 m 0.0000 818 | 16/48
17 h-m-p 0.0000 0.0000 8053.4773 ++ 5487.563910 m 0.0000 869 | 17/48
18 h-m-p 0.0000 0.0000 3843.1161 ++ 5484.440464 m 0.0000 920 | 18/48
19 h-m-p 0.0000 0.0000 1701.5871 ++ 5476.862014 m 0.0000 971 | 19/48
20 h-m-p 0.0000 0.0000 1685.2205 ++ 5441.074177 m 0.0000 1022 | 19/48
21 h-m-p 0.0000 0.0000 9257.7337 +CYCYYYC 5420.642009 6 0.0000 1083 | 19/48
22 h-m-p 0.0000 0.0000 4988.8492 +CYYCC 5415.533339 4 0.0000 1141 | 19/48
23 h-m-p 0.0000 0.0000 2512.3058 ++ 5410.199420 m 0.0000 1192 | 19/48
24 h-m-p 0.0000 0.0000 3272.1137 +YYYCYCCC 5406.190569 7 0.0000 1254 | 19/48
25 h-m-p 0.0000 0.0000 6154.2937 +YYYCCC 5399.824677 5 0.0000 1313 | 19/48
26 h-m-p 0.0000 0.0000 1084.2159 ++ 5396.518991 m 0.0000 1364 | 19/48
27 h-m-p 0.0000 0.0000 3352.3785 +YYYCYCCC 5389.394257 7 0.0000 1426 | 19/48
28 h-m-p 0.0000 0.0001 528.4050 +YCCC 5384.477482 3 0.0001 1483 | 19/48
29 h-m-p 0.0001 0.0003 325.7696 +YYYCCC 5371.306263 5 0.0002 1542 | 18/48
30 h-m-p 0.0001 0.0003 542.7363 YCCCC 5364.704999 4 0.0001 1600 | 18/48
31 h-m-p 0.0000 0.0001 1326.4423 +YYCYCC 5354.579454 5 0.0000 1659 | 18/48
32 h-m-p 0.0000 0.0001 142.8099 +YCYCC 5353.541078 4 0.0001 1717 | 18/48
33 h-m-p 0.0001 0.0004 89.3626 +YYYYYC 5350.628824 5 0.0003 1774 | 18/48
34 h-m-p 0.0000 0.0006 1263.2239 ++CCCC 5319.446791 3 0.0004 1833 | 18/48
35 h-m-p 0.0001 0.0005 759.7022 ++ 5288.245811 m 0.0005 1884 | 19/48
36 h-m-p 0.0008 0.0040 2.4290 +YYCCC 5287.551277 4 0.0025 1942 | 19/48
37 h-m-p 0.0009 0.0415 7.1030 ++CCCC 5281.659428 3 0.0149 2001 | 19/48
38 h-m-p 0.0176 0.1308 5.9998 +YCCC 5270.216949 3 0.0524 2058 | 19/48
39 h-m-p 0.0094 0.0471 10.4620 YCCCC 5259.109854 4 0.0243 2116 | 19/48
40 h-m-p 0.0147 0.0736 3.5289 +CYC 5246.178562 2 0.0629 2171 | 19/48
41 h-m-p 0.0463 0.2317 1.3070 YCCCC 5241.195293 4 0.1090 2229 | 19/48
42 h-m-p 0.0170 0.0850 2.2701 +YYCCC 5235.172775 4 0.0603 2287 | 19/48
43 h-m-p 0.0154 0.0769 1.5017 +YYCCC 5233.658329 4 0.0490 2345 | 19/48
44 h-m-p 0.0198 0.0990 1.5140 +YYCCC 5232.200890 4 0.0688 2403 | 19/48
45 h-m-p 0.1258 1.6961 0.8283 YCCC 5230.801706 3 0.2366 2459 | 19/48
46 h-m-p 0.0730 0.3652 1.6739 YCCC 5228.825235 3 0.1395 2544 | 19/48
47 h-m-p 0.1720 0.8602 0.8278 CCC 5227.914946 2 0.2001 2599 | 19/48
48 h-m-p 0.1282 0.6408 0.2294 CCC 5227.325001 2 0.1549 2683 | 19/48
49 h-m-p 0.0563 1.2234 0.6315 +CCC 5226.786382 2 0.2510 2768 | 19/48
50 h-m-p 0.2872 3.5743 0.5521 CYC 5226.448799 2 0.3380 2851 | 19/48
51 h-m-p 0.2543 1.2715 0.4514 CC 5226.121795 1 0.3149 2933 | 19/48
52 h-m-p 0.6431 8.0000 0.2210 YC 5225.802853 1 1.4560 3014 | 19/48
53 h-m-p 1.6000 8.0000 0.0140 CCC 5225.541193 2 1.6656 3098 | 19/48
54 h-m-p 0.1374 8.0000 0.1696 ++YC 5225.269138 1 1.3941 3181 | 19/48
55 h-m-p 1.6000 8.0000 0.0312 YC 5224.737093 1 2.7415 3262 | 19/48
56 h-m-p 0.8543 4.2716 0.0341 YCCC 5224.249597 3 1.7890 3347 | 19/48
57 h-m-p 0.6059 8.0000 0.1007 YC 5223.946407 1 1.5064 3428 | 19/48
58 h-m-p 1.5952 7.9759 0.0658 C 5223.613443 0 1.5991 3508 | 19/48
59 h-m-p 1.6000 8.0000 0.0295 CCC 5223.420770 2 2.0274 3592 | 19/48
60 h-m-p 1.3214 8.0000 0.0452 CYC 5223.349934 2 1.5111 3675 | 19/48
61 h-m-p 1.6000 8.0000 0.0106 YC 5223.332896 1 1.2707 3756 | 19/48
62 h-m-p 1.6000 8.0000 0.0070 C 5223.327090 0 1.5557 3836 | 19/48
63 h-m-p 1.6000 8.0000 0.0015 CC 5223.325028 1 2.1360 3918 | 19/48
64 h-m-p 0.6815 8.0000 0.0046 +CC 5223.323718 1 3.4694 4001 | 19/48
65 h-m-p 1.6000 8.0000 0.0012 +YC 5223.320979 1 5.3449 4083 | 19/48
66 h-m-p 1.6000 8.0000 0.0024 ++ 5223.306044 m 8.0000 4163 | 19/48
67 h-m-p 1.6000 8.0000 0.0104 YCCC 5223.261348 3 2.9759 4248 | 19/48
68 h-m-p 1.6000 8.0000 0.0086 +YC 5223.171489 1 4.2342 4330 | 19/48
69 h-m-p 1.5596 8.0000 0.0233 YC 5223.116584 1 3.0255 4411 | 19/48
70 h-m-p 1.6000 8.0000 0.0383 YYC 5223.100137 2 1.2198 4493 | 19/48
71 h-m-p 1.6000 8.0000 0.0275 C 5223.095896 0 1.6000 4573 | 19/48
72 h-m-p 1.6000 8.0000 0.0043 Y 5223.095422 0 1.2685 4653 | 19/48
73 h-m-p 1.6000 8.0000 0.0007 C 5223.095400 0 1.3391 4733 | 19/48
74 h-m-p 1.6000 8.0000 0.0004 C 5223.095398 0 1.4117 4813 | 19/48
75 h-m-p 1.6000 8.0000 0.0000 C 5223.095397 0 1.4541 4893 | 19/48
76 h-m-p 1.6000 8.0000 0.0000 --Y 5223.095397 0 0.0250 4975 | 19/48
77 h-m-p 0.0271 8.0000 0.0000 --------------.. | 19/48
78 h-m-p 0.0002 0.1017 0.0497 ---------- | 19/48
79 h-m-p 0.0002 0.1017 0.0497 ----------
Out..
lnL = -5223.095397
5244 lfun, 20976 eigenQcodon, 676476 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -5235.622135 S = -5011.829969 -222.939713
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 354 patterns 12:12
did 20 / 354 patterns 12:12
did 30 / 354 patterns 12:12
did 40 / 354 patterns 12:12
did 50 / 354 patterns 12:12
did 60 / 354 patterns 12:12
did 70 / 354 patterns 12:12
did 80 / 354 patterns 12:12
did 90 / 354 patterns 12:12
did 100 / 354 patterns 12:13
did 110 / 354 patterns 12:13
did 120 / 354 patterns 12:13
did 130 / 354 patterns 12:13
did 140 / 354 patterns 12:13
did 150 / 354 patterns 12:13
did 160 / 354 patterns 12:13
did 170 / 354 patterns 12:13
did 180 / 354 patterns 12:13
did 190 / 354 patterns 12:13
did 200 / 354 patterns 12:13
did 210 / 354 patterns 12:13
did 220 / 354 patterns 12:13
did 230 / 354 patterns 12:13
did 240 / 354 patterns 12:13
did 250 / 354 patterns 12:13
did 260 / 354 patterns 12:13
did 270 / 354 patterns 12:13
did 280 / 354 patterns 12:13
did 290 / 354 patterns 12:13
did 300 / 354 patterns 12:14
did 310 / 354 patterns 12:14
did 320 / 354 patterns 12:14
did 330 / 354 patterns 12:14
did 340 / 354 patterns 12:14
did 350 / 354 patterns 12:14
did 354 / 354 patterns 12:14end of tree file.
Time used: 12:14
Model 7: beta
TREE # 1
(1, (((((10, 11, 12, 13, 17, (21, 22, 28), 27, 4, 9), (15, 23)), (((14, 24, 25, 29), 26, 3, 5), (6, 7))), 16), ((18, 8), 20)), (19, 2)); MP score: 566
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
33
0.099348 0.011797 0.042004 0.026800 0.064243 0.088552 0.049039 0.012817 0.065560 0.087465 0.019554 0.105554 0.052070 0.012994 0.070070 0.064380 0.067045 0.030511 0.096691 0.097058 0.016935 0.079724 0.093731 0.050663 0.062984 0.067685 0.063248 0.015674 0.090490 0.052331 0.057693 0.091690 0.085381 0.102487 0.072845 0.038210 0.022813 0.095272 0.083234 0.108896 0.047458 0.086847 0.087225 3.456396 0.527859 1.901831
ntime & nrate & np: 43 1 46
Bounds (np=46):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 7.639110
np = 46
lnL0 = -6309.846735
Iterating by ming2
Initial: fx= 6309.846735
x= 0.09935 0.01180 0.04200 0.02680 0.06424 0.08855 0.04904 0.01282 0.06556 0.08746 0.01955 0.10555 0.05207 0.01299 0.07007 0.06438 0.06704 0.03051 0.09669 0.09706 0.01693 0.07972 0.09373 0.05066 0.06298 0.06769 0.06325 0.01567 0.09049 0.05233 0.05769 0.09169 0.08538 0.10249 0.07284 0.03821 0.02281 0.09527 0.08323 0.10890 0.04746 0.08685 0.08722 3.45640 0.52786 1.90183
1 h-m-p 0.0000 0.0000 4845.7903 ++ 5991.821757 m 0.0000 97 | 1/46
2 h-m-p 0.0000 0.0000 3546.4111 ++ 5989.352691 m 0.0000 192 | 2/46
3 h-m-p 0.0000 0.0000 295114.8694 ++ 5956.700169 m 0.0000 286 | 3/46
4 h-m-p 0.0000 0.0000 15657.5955 ++ 5934.764828 m 0.0000 379 | 4/46
5 h-m-p 0.0000 0.0000 5959.5476 ++ 5887.632572 m 0.0000 471 | 4/46
6 h-m-p 0.0000 0.0000 8237.3868 ++ 5853.599367 m 0.0000 562 | 5/46
7 h-m-p 0.0000 0.0000 8271.3749 ++ 5822.157900 m 0.0000 653 | 5/46
8 h-m-p -0.0000 -0.0000 7464.2027
h-m-p: -0.00000000e+00 -0.00000000e+00 7.46420267e+03 5822.157900
.. | 5/46
9 h-m-p 0.0000 0.0000 439546.8158 ---CYCYYYYYYY 5816.894089 9 0.0000 844 | 5/46
10 h-m-p 0.0000 0.0000 2377.8445 ++ 5684.522972 m 0.0000 934 | 5/46
11 h-m-p 0.0000 0.0000 90635.5985 ++ 5583.110047 m 0.0000 1024 | 5/46
12 h-m-p 0.0000 0.0000 66261.2892 ++ 5569.910303 m 0.0000 1114 | 6/46
13 h-m-p 0.0000 0.0000 418830.5530 ++ 5537.608909 m 0.0000 1204 | 7/46
14 h-m-p 0.0000 0.0000 29571.3608 ++ 5487.047473 m 0.0000 1293 | 8/46
15 h-m-p 0.0000 0.0000 14588.5574 ++ 5446.624209 m 0.0000 1381 | 9/46
16 h-m-p 0.0000 0.0000 54327.3809 ++ 5444.804521 m 0.0000 1468 | 10/46
17 h-m-p 0.0000 0.0000 985326.0876 ++ 5435.047513 m 0.0000 1554 | 11/46
18 h-m-p 0.0000 0.0000 5632.2663 ++ 5420.420279 m 0.0000 1639 | 12/46
19 h-m-p 0.0000 0.0000 27637.2133 ++ 5405.283797 m 0.0000 1723 | 13/46
20 h-m-p 0.0000 0.0000 6467.8139 ++ 5345.693330 m 0.0000 1806 | 14/46
21 h-m-p 0.0000 0.0000 6203.2856 ++ 5334.979346 m 0.0000 1888 | 15/46
22 h-m-p 0.0000 0.0000 11008.0221 ++ 5332.794439 m 0.0000 1969 | 16/46
23 h-m-p 0.0000 0.0000 3392.9468 ++ 5319.307124 m 0.0000 2049 | 17/46
24 h-m-p 0.0000 0.0000 3679.3886 ++ 5316.685062 m 0.0000 2128 | 18/46
25 h-m-p 0.0000 0.0000 650.7836 ++ 5305.552649 m 0.0000 2206 | 19/46
26 h-m-p 0.0000 0.0001 439.6848 +CYCYCCC 5286.041076 6 0.0001 2294 | 18/46
27 h-m-p 0.0000 0.0000 1016.6749 +YYCCC 5284.796217 4 0.0000 2377 | 18/46
28 h-m-p 0.0000 0.0000 1228.9514 +YYYYCYCCC 5281.243949 8 0.0000 2466 | 18/46
29 h-m-p 0.0000 0.0002 343.1125 +CYYCYCCC 5271.548176 7 0.0002 2555 | 18/46
30 h-m-p 0.0000 0.0000 6536.5384 +YYCCCC 5262.972827 5 0.0000 2641 | 18/46
31 h-m-p 0.0000 0.0000 1471.6043 +CCYC 5258.907406 3 0.0000 2724 | 18/46
32 h-m-p 0.0000 0.0000 2238.3666 +YYYCCC 5256.492406 5 0.0000 2809 | 18/46
33 h-m-p 0.0000 0.0002 1294.8825 +YYYCC 5249.614636 4 0.0001 2892 | 18/46
34 h-m-p 0.0000 0.0002 207.4441 CCCC 5248.748363 3 0.0001 2975 | 18/46
35 h-m-p 0.0003 0.0016 33.3112 CC 5248.702092 1 0.0001 3054 | 18/46
36 h-m-p 0.0001 0.0009 36.6642 C 5248.698229 0 0.0000 3131 | 18/46
37 h-m-p 0.0000 0.0012 52.9124 YC 5248.685799 1 0.0000 3209 | 18/46
38 h-m-p 0.0001 0.0044 26.3688 +CC 5248.480094 1 0.0005 3289 | 18/46
39 h-m-p 0.0002 0.0017 71.8488 CC 5248.178870 1 0.0002 3368 | 18/46
40 h-m-p 0.0003 0.0022 55.5215 CCC 5247.943648 2 0.0002 3449 | 18/46
41 h-m-p 0.0007 0.0039 19.1573 CC 5247.651876 1 0.0007 3528 | 18/46
42 h-m-p 0.0004 0.0022 20.9825 CCC 5247.454553 2 0.0006 3609 | 18/46
43 h-m-p 0.0006 0.0094 20.0272 +YYC 5247.128239 2 0.0019 3689 | 18/46
44 h-m-p 0.0006 0.0079 61.0383 CCC 5246.837607 2 0.0006 3770 | 18/46
45 h-m-p 0.0012 0.0154 30.8446 +YCY 5245.828294 2 0.0030 3851 | 18/46
46 h-m-p 0.0013 0.0065 35.5401 CC 5245.685272 1 0.0004 3930 | 18/46
47 h-m-p 0.0008 0.0292 16.8847 ++YYC 5243.566506 2 0.0120 4011 | 18/46
48 h-m-p 0.0080 0.0402 9.9741 +YCCC 5241.440855 3 0.0224 4094 | 18/46
49 h-m-p 0.1416 0.9396 1.5792 CCCC 5238.715497 3 0.1195 4177 | 18/46
50 h-m-p 0.0864 0.4490 2.1841 +YYYCC 5233.871000 4 0.3156 4260 | 18/46
51 h-m-p 0.0295 0.1477 14.0256 CCCC 5232.800178 3 0.0302 4343 | 18/46
52 h-m-p 0.0509 0.2547 6.4054 YYC 5231.919190 2 0.0422 4422 | 18/46
53 h-m-p 0.1855 0.9274 0.9566 YCCC 5230.899674 3 0.3424 4504 | 18/46
54 h-m-p 0.4840 2.4199 0.3346 CYC 5229.321591 2 0.5523 4584 | 18/46
55 h-m-p 0.7007 6.0270 0.2638 CCC 5229.029369 2 0.6147 4665 | 18/46
56 h-m-p 0.2215 1.1074 0.7171 YYC 5228.871491 2 0.1916 4744 | 18/46
57 h-m-p 0.9502 4.7511 0.1377 YCC 5228.750102 2 0.6542 4824 | 18/46
58 h-m-p 1.6000 8.0000 0.0051 CC 5228.681130 1 1.8717 4903 | 18/46
59 h-m-p 1.6000 8.0000 0.0051 CC 5228.592149 1 1.8212 4982 | 18/46
60 h-m-p 0.2940 8.0000 0.0316 +CCC 5228.466361 2 1.4721 5064 | 18/46
61 h-m-p 1.6000 8.0000 0.0135 CYC 5228.218908 2 1.8530 5144 | 18/46
62 h-m-p 0.7596 8.0000 0.0330 YC 5228.079101 1 1.5637 5222 | 18/46
63 h-m-p 1.6000 8.0000 0.0103 CC 5228.011660 1 2.0921 5301 | 18/46
64 h-m-p 1.1574 8.0000 0.0187 YC 5227.941079 1 2.1376 5379 | 18/46
65 h-m-p 1.6000 8.0000 0.0012 ++ 5227.701551 m 8.0000 5456 | 18/46
66 h-m-p 1.4189 7.0944 0.0067 +YCYCC 5226.825393 4 4.2183 5540 | 18/46
67 h-m-p 1.6000 8.0000 0.0103 YCC 5225.883565 2 3.3723 5620 | 18/46
68 h-m-p 0.9500 4.7501 0.0064 YCCC 5225.231350 3 2.0184 5702 | 18/46
69 h-m-p 1.4255 8.0000 0.0091 YCCC 5224.977605 3 0.7245 5784 | 18/46
70 h-m-p 0.5656 6.6450 0.0116 +CCC 5224.512012 2 2.3509 5866 | 18/46
71 h-m-p 1.6000 8.0000 0.0108 CYC 5224.356550 2 1.8091 5946 | 18/46
72 h-m-p 1.6000 8.0000 0.0050 CC 5224.331075 1 1.3750 6025 | 18/46
73 h-m-p 1.6000 8.0000 0.0014 CC 5224.327769 1 1.4209 6104 | 18/46
74 h-m-p 1.6000 8.0000 0.0007 YC 5224.325388 1 3.3712 6182 | 18/46
75 h-m-p 1.6000 8.0000 0.0004 ++ 5224.315535 m 8.0000 6259 | 18/46
76 h-m-p 1.6000 8.0000 0.0013 +C 5224.281986 0 6.6436 6337 | 18/46
77 h-m-p 1.6000 8.0000 0.0022 +YC 5224.194076 1 5.3781 6416 | 18/46
78 h-m-p 1.6000 8.0000 0.0049 CC 5224.166648 1 2.0116 6495 | 18/46
79 h-m-p 1.6000 8.0000 0.0014 CC 5224.161552 1 1.4306 6574 | 18/46
80 h-m-p 1.6000 8.0000 0.0012 C 5224.161112 0 1.4678 6651 | 18/46
81 h-m-p 1.6000 8.0000 0.0002 Y 5224.161078 0 1.2752 6728 | 18/46
82 h-m-p 1.6000 8.0000 0.0002 C 5224.161073 0 1.7031 6805 | 18/46
83 h-m-p 1.6000 8.0000 0.0000 +Y 5224.161067 0 4.4115 6883 | 18/46
84 h-m-p 1.6000 8.0000 0.0000 ++ 5224.161029 m 8.0000 6960 | 18/46
85 h-m-p 1.3558 8.0000 0.0002 Y 5224.160922 0 3.0725 7037 | 18/46
86 h-m-p 1.6000 8.0000 0.0000 ++ 5224.159880 m 8.0000 7114 | 18/46
87 h-m-p 0.1143 8.0000 0.0022 ++C 5224.149341 0 1.7977 7193 | 18/46
88 h-m-p 1.6000 8.0000 0.0003 ++ 5224.104567 m 8.0000 7270 | 18/46
89 h-m-p 1.3315 8.0000 0.0021 YC 5224.093322 1 1.0435 7348 | 18/46
90 h-m-p 1.6000 8.0000 0.0004 YC 5224.092549 1 1.2247 7426 | 18/46
91 h-m-p 1.6000 8.0000 0.0002 Y 5224.092517 0 0.9684 7503 | 18/46
92 h-m-p 1.6000 8.0000 0.0000 Y 5224.092517 0 1.1426 7580 | 18/46
93 h-m-p 1.6000 8.0000 0.0000 Y 5224.092517 0 3.0646 7657 | 18/46
94 h-m-p 1.5850 8.0000 0.0000 Y 5224.092517 0 0.2845 7734 | 18/46
95 h-m-p 0.4072 8.0000 0.0000 ------C 5224.092517 0 0.0000 7817
Out..
lnL = -5224.092517
7818 lfun, 85998 eigenQcodon, 3361740 P(t)
end of tree file.
Time used: 46:12
Model 8: beta&w>1
TREE # 1
(1, (((((10, 11, 12, 13, 17, (21, 22, 28), 27, 4, 9), (15, 23)), (((14, 24, 25, 29), 26, 3, 5), (6, 7))), 16), ((18, 8), 20)), (19, 2)); MP score: 566
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
33
0.067435 0.103959 0.060865 0.020805 0.086560 0.039341 0.091452 0.031602 0.109438 0.013255 0.022829 0.081278 0.040458 0.015194 0.056555 0.104067 0.024687 0.030504 0.109903 0.023650 0.013345 0.054413 0.090854 0.106598 0.054179 0.086045 0.044084 0.045005 0.042675 0.069597 0.041391 0.023008 0.045056 0.024882 0.064987 0.096888 0.078983 0.084398 0.107104 0.093425 0.012915 0.029147 0.084342 3.409033 0.900000 1.162068 1.100607 1.300000
ntime & nrate & np: 43 2 48
Bounds (np=48):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 4.627149
np = 48
lnL0 = -6332.163686
Iterating by ming2
Initial: fx= 6332.163686
x= 0.06744 0.10396 0.06087 0.02080 0.08656 0.03934 0.09145 0.03160 0.10944 0.01325 0.02283 0.08128 0.04046 0.01519 0.05655 0.10407 0.02469 0.03050 0.10990 0.02365 0.01335 0.05441 0.09085 0.10660 0.05418 0.08604 0.04408 0.04500 0.04268 0.06960 0.04139 0.02301 0.04506 0.02488 0.06499 0.09689 0.07898 0.08440 0.10710 0.09343 0.01291 0.02915 0.08434 3.40903 0.90000 1.16207 1.10061 1.30000
1 h-m-p 0.0000 0.0000 3636.5867 ++ 6055.057218 m 0.0000 101 | 1/48
2 h-m-p 0.0000 0.0000 4334.0720 ++ 6054.156513 m 0.0000 200 | 2/48
3 h-m-p 0.0000 0.0000 7052712.8020 ++ 6030.698004 m 0.0000 298 | 3/48
4 h-m-p 0.0000 0.0000 9407.1592 ++ 5924.517312 m 0.0000 395 | 4/48
5 h-m-p 0.0000 0.0000 15086.3120 ++ 5922.293757 m 0.0000 491 | 5/48
6 h-m-p 0.0000 0.0000 29409.2496 ++ 5867.596002 m 0.0000 586 | 6/48
7 h-m-p 0.0000 0.0000 15009.8981 ++ 5849.382603 m 0.0000 680 | 7/48
8 h-m-p 0.0000 0.0000 8901.0358 ++ 5764.272026 m 0.0000 773 | 8/48
9 h-m-p 0.0000 0.0000 9143.2674 ++ 5758.227554 m 0.0000 865 | 9/48
10 h-m-p 0.0000 0.0000 13650.9639 ++ 5737.036101 m 0.0000 956 | 10/48
11 h-m-p 0.0000 0.0000 19600.3077 ++ 5730.581635 m 0.0000 1046 | 11/48
12 h-m-p 0.0000 0.0000 28267.9651 ++ 5672.563315 m 0.0000 1135 | 12/48
13 h-m-p 0.0000 0.0000 11621.9142 ++ 5655.970227 m 0.0000 1223 | 13/48
14 h-m-p 0.0000 0.0000 5981.5227 ++ 5596.450386 m 0.0000 1310 | 14/48
15 h-m-p 0.0000 0.0000 5793.3645 ++ 5540.289095 m 0.0000 1396 | 15/48
16 h-m-p 0.0000 0.0000 4015.3905 ++ 5508.900178 m 0.0000 1481 | 16/48
17 h-m-p 0.0000 0.0000 2437.9872 ++ 5479.704745 m 0.0000 1565 | 17/48
18 h-m-p 0.0000 0.0000 1752.3807 ++ 5477.770548 m 0.0000 1648 | 18/48
19 h-m-p 0.0000 0.0000 1163.1172 +CYCYYCC 5461.172898 6 0.0000 1741 | 18/48
20 h-m-p 0.0000 0.0000 2494.3038 +YYYYCYCCC 5457.117735 8 0.0000 1834 | 18/48
21 h-m-p 0.0000 0.0000 2576.6478 +CYC 5453.802547 2 0.0000 1919 | 18/48
22 h-m-p 0.0000 0.0000 1260.3298 +YYCC 5452.297744 3 0.0000 2005 | 18/48
23 h-m-p 0.0000 0.0000 910.8816 +CYYYYC 5445.937982 5 0.0000 2093 | 18/48
24 h-m-p 0.0000 0.0000 9664.1633 +CYYCYCCC 5432.001487 7 0.0000 2186 | 18/48
25 h-m-p 0.0000 0.0000 2179.0670 +YYCYC 5430.797597 4 0.0000 2273 | 18/48
26 h-m-p 0.0000 0.0001 1595.5872 +CYCCCC 5412.420172 5 0.0001 2365 | 18/48
27 h-m-p 0.0000 0.0001 1820.7616 ++ 5380.546587 m 0.0001 2446 | 19/48
28 h-m-p 0.0000 0.0000 13465.5175 ++ 5350.302092 m 0.0000 2527 | 19/48
29 h-m-p 0.0000 0.0000 3650.7497 +YCCYC 5330.224181 4 0.0000 2615 | 19/48
30 h-m-p 0.0000 0.0000 5682.3111 ++ 5324.807767 m 0.0000 2695 | 19/48
31 h-m-p 0.0000 0.0000 4064.3267 +CYCCC 5308.367625 4 0.0000 2783 | 19/48
32 h-m-p 0.0000 0.0002 274.5370 CC 5308.125455 1 0.0000 2865 | 19/48
33 h-m-p 0.0000 0.0001 951.3591 +YYCCC 5305.664773 4 0.0000 2952 | 19/48
34 h-m-p 0.0000 0.0001 578.5396 +YCCC 5303.928598 3 0.0001 3038 | 19/48
35 h-m-p 0.0001 0.0011 470.8768 +YYYC 5296.489949 3 0.0003 3122 | 18/48
36 h-m-p 0.0002 0.0013 663.3153 CYCC 5290.821655 3 0.0002 3207 | 18/48
37 h-m-p 0.0001 0.0005 406.2281 CCC 5288.390024 2 0.0002 3292 | 18/48
38 h-m-p 0.0016 0.0088 41.5213 YCCC 5285.241817 3 0.0031 3378 | 18/48
39 h-m-p 0.0008 0.0042 76.7750 +YYCYCCC 5270.552439 6 0.0035 3469 | 18/48
40 h-m-p 0.0017 0.0083 5.5828 +YYYCCC 5269.008474 5 0.0059 3558 | 18/48
41 h-m-p 0.0011 0.0060 31.2637 YCCC 5266.416958 3 0.0022 3644 | 18/48
42 h-m-p 0.0156 0.0948 4.3577 +YCC 5257.028783 2 0.0473 3729 | 18/48
43 h-m-p 0.0152 0.0994 13.5230 YC 5251.143513 1 0.0274 3811 | 18/48
44 h-m-p 0.0136 0.0680 3.7045 +CCC 5245.987130 2 0.0570 3897 | 18/48
45 h-m-p 0.0116 0.0580 1.9530 +CC 5243.803491 1 0.0464 3981 | 18/48
46 h-m-p 0.0572 1.2056 1.5847 YCCC 5241.874165 3 0.1162 4067 | 18/48
47 h-m-p 0.0914 0.4569 1.1983 CYCC 5238.347063 3 0.1114 4153 | 18/48
48 h-m-p 0.0947 0.4734 1.2406 YCCC 5234.194852 3 0.2056 4239 | 18/48
49 h-m-p 0.2518 1.2592 0.9340 YCCC 5233.235849 3 0.1508 4325 | 18/48
50 h-m-p 0.0555 0.2773 1.2867 +YC 5230.961237 1 0.1700 4408 | 18/48
51 h-m-p 0.0231 0.1156 1.2894 +CYC 5229.924737 2 0.0878 4493 | 18/48
52 h-m-p 0.0982 0.4912 0.6552 +CCC 5229.040964 2 0.3737 4579 | 18/48
53 h-m-p 0.1108 0.5538 1.2999 YC 5228.511738 1 0.1794 4661 | 18/48
54 h-m-p 1.1677 6.2407 0.1997 CYC 5228.198664 2 0.3260 4745 | 18/48
55 h-m-p 0.1624 0.8122 0.0730 ++ 5227.974286 m 0.8122 4826 | 19/48
56 h-m-p 0.9484 8.0000 0.0195 C 5227.855928 0 0.9629 4907 | 19/48
57 h-m-p 1.3561 8.0000 0.0139 CC 5227.757416 1 1.8852 4989 | 19/48
58 h-m-p 1.5161 8.0000 0.0172 YC 5227.625794 1 2.9733 5070 | 19/48
59 h-m-p 1.1190 8.0000 0.0458 YC 5227.468354 1 2.7030 5151 | 19/48
60 h-m-p 1.6000 8.0000 0.0404 YC 5227.293573 1 3.6049 5232 | 19/48
61 h-m-p 1.6000 8.0000 0.0662 YC 5227.153122 1 2.7070 5313 | 19/48
62 h-m-p 1.6000 8.0000 0.0565 YC 5227.006888 1 2.6929 5394 | 19/48
63 h-m-p 1.6000 8.0000 0.0619 YC 5226.866217 1 2.6348 5475 | 19/48
64 h-m-p 1.6000 8.0000 0.0517 YC 5226.696586 1 3.1762 5556 | 19/48
65 h-m-p 1.6000 8.0000 0.0840 YC 5226.548645 1 3.6583 5637 | 19/48
66 h-m-p 1.6000 8.0000 0.0884 YCCC 5226.401946 3 2.9666 5722 | 19/48
67 h-m-p 1.6000 8.0000 0.0148 CCCC 5226.263898 3 2.8026 5808 | 19/48
68 h-m-p 1.6000 8.0000 0.0147 YC 5226.100248 1 3.5314 5889 | 19/48
69 h-m-p 0.3667 8.0000 0.1419 ++CC 5225.758861 1 5.2552 5973 | 19/48
70 h-m-p 1.6000 8.0000 0.3598 +YCCC 5225.200084 3 4.6010 6059 | 19/48
71 h-m-p 1.6000 8.0000 0.5463 YC 5224.527759 1 3.6322 6140 | 19/48
72 h-m-p 1.6000 8.0000 0.8827 YCC 5223.980634 2 2.8775 6223 | 19/48
73 h-m-p 1.6000 8.0000 1.5045 CCC 5223.565169 2 2.1007 6307 | 19/48
74 h-m-p 1.6000 8.0000 1.2554 CC 5223.391792 1 1.4945 6389 | 19/48
75 h-m-p 1.6000 8.0000 0.8635 CC 5223.297683 1 2.4714 6471 | 19/48
76 h-m-p 1.5027 8.0000 1.4201 CC 5223.198082 1 2.0625 6553 | 19/48
77 h-m-p 1.6000 8.0000 0.6479 CC 5223.168273 1 1.4361 6635 | 19/48
78 h-m-p 1.6000 8.0000 0.3442 CC 5223.160464 1 2.0664 6717 | 19/48
79 h-m-p 1.6000 8.0000 0.1558 YC 5223.152261 1 3.2495 6798 | 19/48
80 h-m-p 1.6000 8.0000 0.1897 +YC 5223.141184 1 4.1051 6880 | 19/48
81 h-m-p 1.6000 8.0000 0.1660 YC 5223.131069 1 3.1013 6961 | 19/48
82 h-m-p 1.6000 8.0000 0.1492 YC 5223.123838 1 3.7980 7042 | 19/48
83 h-m-p 1.6000 8.0000 0.1628 CC 5223.120354 1 2.4386 7124 | 19/48
84 h-m-p 1.6000 8.0000 0.1444 Y 5223.119948 0 1.2605 7204 | 19/48
85 h-m-p 1.6000 8.0000 0.0343 Y 5223.119932 0 1.2176 7284 | 19/48
86 h-m-p 1.6000 8.0000 0.0075 +Y 5223.119922 0 4.8120 7365 | 19/48
87 h-m-p 1.6000 8.0000 0.0051 ++ 5223.119875 m 8.0000 7445 | 19/48
88 h-m-p 1.6000 8.0000 0.0021 Y 5223.119828 0 3.4973 7525 | 19/48
89 h-m-p 1.6000 8.0000 0.0026 ++ 5223.119522 m 8.0000 7605 | 19/48
90 h-m-p 1.1081 8.0000 0.0186 +YC 5223.118181 1 3.4971 7687 | 19/48
91 h-m-p 1.6000 8.0000 0.0268 ++ 5223.104879 m 8.0000 7767 | 19/48
92 h-m-p 0.1442 8.0000 1.4846 ++YCC 5223.041711 2 1.5269 7852 | 19/48
93 h-m-p 1.6000 8.0000 0.3941 YC 5223.002814 1 2.9069 7933 | 19/48
94 h-m-p 1.3378 8.0000 0.8564 YC 5222.998946 1 1.0134 8014 | 19/48
95 h-m-p 1.6000 8.0000 0.0684 Y 5222.998868 0 1.0394 8094 | 19/48
96 h-m-p 1.6000 8.0000 0.0173 C 5222.998864 0 1.3234 8174 | 19/48
97 h-m-p 1.6000 8.0000 0.0032 Y 5222.998863 0 0.9676 8254 | 19/48
98 h-m-p 1.6000 8.0000 0.0005 Y 5222.998863 0 2.8270 8334 | 19/48
99 h-m-p 1.6000 8.0000 0.0006 ++ 5222.998861 m 8.0000 8414 | 19/48
100 h-m-p 0.2761 8.0000 0.0170 ++Y 5222.998847 0 2.7814 8496 | 19/48
101 h-m-p 1.6000 8.0000 0.0096 ++ 5222.998715 m 8.0000 8576 | 19/48
102 h-m-p 0.0240 6.8307 3.1950 +++YY 5222.994582 1 1.5344 8660 | 19/48
103 h-m-p 1.6000 8.0000 1.0120 CYC 5222.989018 2 3.0309 8743 | 19/48
104 h-m-p 1.6000 8.0000 0.5109 C 5222.987637 0 0.4767 8823 | 19/48
105 h-m-p 0.1368 7.9213 1.7798 +Y 5222.987347 0 0.3825 8904 | 19/48
106 h-m-p 1.6000 8.0000 0.1068 Y 5222.987310 0 0.8867 8984 | 19/48
107 h-m-p 1.6000 8.0000 0.0258 Y 5222.987307 0 1.0635 9064 | 19/48
108 h-m-p 1.6000 8.0000 0.0080 Y 5222.987307 0 0.2504 9144 | 19/48
109 h-m-p 0.2332 8.0000 0.0086 C 5222.987307 0 0.1886 9224 | 19/48
110 h-m-p 0.2697 8.0000 0.0060 -C 5222.987307 0 0.0169 9305 | 19/48
111 h-m-p 0.0887 8.0000 0.0011 ----C 5222.987307 0 0.0001 9389 | 19/48
112 h-m-p 0.0160 8.0000 0.0065 --------Y 5222.987307 0 0.0000 9477 | 19/48
113 h-m-p 0.0160 8.0000 0.1391 -----------Y 5222.987307 0 0.0000 9568 | 19/48
114 h-m-p 0.0160 8.0000 0.0036 -------------.. | 19/48
115 h-m-p 0.0002 0.1141 0.0993 ----------
Out..
lnL = -5222.987307
9748 lfun, 116976 eigenQcodon, 4610804 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -5235.087068 S = -5012.338434 -260.074149
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 354 patterns 1:32:48
did 20 / 354 patterns 1:32:48
did 30 / 354 patterns 1:32:49
did 40 / 354 patterns 1:32:49
did 50 / 354 patterns 1:32:49
did 60 / 354 patterns 1:32:49
did 70 / 354 patterns 1:32:49
did 80 / 354 patterns 1:32:50
did 90 / 354 patterns 1:32:50
did 100 / 354 patterns 1:32:50
did 110 / 354 patterns 1:32:50
did 120 / 354 patterns 1:32:50
did 130 / 354 patterns 1:32:50
did 140 / 354 patterns 1:32:51
did 150 / 354 patterns 1:32:51
did 160 / 354 patterns 1:32:51
did 170 / 354 patterns 1:32:51
did 180 / 354 patterns 1:32:51
did 190 / 354 patterns 1:32:52
did 200 / 354 patterns 1:32:52
did 210 / 354 patterns 1:32:52
did 220 / 354 patterns 1:32:52
did 230 / 354 patterns 1:32:52
did 240 / 354 patterns 1:32:53
did 250 / 354 patterns 1:32:53
did 260 / 354 patterns 1:32:53
did 270 / 354 patterns 1:32:53
did 280 / 354 patterns 1:32:53
did 290 / 354 patterns 1:32:54
did 300 / 354 patterns 1:32:54
did 310 / 354 patterns 1:32:54
did 320 / 354 patterns 1:32:54
did 330 / 354 patterns 1:32:54
did 340 / 354 patterns 1:32:55
did 350 / 354 patterns 1:32:55
did 354 / 354 patterns 1:32:55end of tree file.
Time used: 1:32:55
The loglikelihoods for models M1, M2, M7 and M8 are -5223.095397 -5223.095397 -5224.092517 -5222.987307 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
681_nsp2_VIPR_ALG4_381354058_921_2675_1_NA_NA_Rat_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDNEVVVAWHVDRDPRA
8190_nsp2_VIPR_ALG4_381354069_921_2675_1_NA_NA_Rat_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRESLDNEVVVAWHVDRDPRA
JHM_WU_nsp2_VIPR_ALG4_397136020_935_2689_1_1947_08_14_USA_Unknown_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVVAWHVDRDPRA
A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRA
JHM_WU_Dns2_nsp2_VIPR_ALG4_397136010_931_2685_1_1947_08_14_USA_Unknown_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVVAWHVDRDPRA
MHV_1_nsp2_VIPR_ALG4_225403253_932_2686_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDKEVVVAWHVDRDPRA
MHV_3_nsp2_VIPR_ALG4_225403263_928_2682_1_NA_USA_Mouse_Murine_coronavirus VNPILFVDQYGCDYTGCLAKGLEDYGECTLDEMKELFPVWRDSLGSDVIVAWQVVRDPRA
MHV_2_nsp2_VIPR_ALG4_6625760_951_2705_1_NA_NA_Unknown_Murine_coronavirus VKSILFLDQYGCDYTGRLAKGLEDYGDCTLEEMKELFPVWCDSLDNEVVVAWHVDRDPRA
MHV_A59_ORF1ab_YP_009915689_1_NA_NA_Unknown_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRA
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp2_VIPR_ALG4_530291001_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRA
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp2_VIPR_ALG4_530291013_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRA
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp2_VIPR_ALG4_530291025_926_2680_1_2012_10_25_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRA
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp2_VIPR_ALG4_530290989_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRA
MHV_JHM_IA_nsp2_VIPR_ALG4_225403289_931_2685_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVVAWHVDRDPRA
MHV_S_3239_17_nsp2_VIPR_ALG4_380706996_952_2706_1_NA_NA_Unknown_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDNEVVVAWHVDRDPRA
MHV_MI_nsp2_VIPR_ALG4_293330423_910_2664_1_1994_Australia_Mouse_Murine_coronavirus VKPVLFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWCDSLDKEVVVAWHVDRDPRA
ML_10_nsp2_VIPR_ALG4_7769352_942_2696_1_NA_NA_Unknown_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRA
ML_11_nsp2_VIPR_ALG4_7739594_951_2705_1_NA_NA_Unknown_Murine_coronavirus VKSILFLDQYGCDYTGRLAKGLEDYGDCTLEEMKELFPVWCDSLDNEVVVAWHVDRDPRA
Parker_ORF1ab_YP_009924369_1_NA_NA_Rat_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRESLDNEVVVAWHVDRDPRA
Penn_97_1_nsp2_VIPR_ALG4_7769341_951_2705_1_NA_NA_Unknown_Murine_coronavirus VKSILFLDQYGCDYTGRLAKGLEDYGDCTLEEMKELFPVWCDSLDNEVVVAWHVDRDPRA
RA59_R13_nsp2_VIPR_ALG4_225403197_928_2682_1_2006_01_01_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRA
RA59_SJHM_nsp2_VIPR_ALG4_225403223_912_2666_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRA
S_nsp2_VIPR_ALG4_298199703_952_2706_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDNEVVVAWHVDRDPRA
RJHM_A_nsp2_VIPR_ALG4_225403216_909_2663_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVVAWHVDRDPRA
SA59_RJHM_nsp2_VIPR_ALG4_225403245_909_2663_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVVAWHVDRDPRA
UNKNOWN_AC_000192_nsp2_VIPR_ALG4_YP_209230_1_956_2710_1_NA_NA_Unknown_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVVAWHVDRDPRA
inf_MHV_A59_nsp2_VIPR_ALG4_225403278_926_2680_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRA
repA59_RJHM_nsp2_VIPR_ALG4_225403233_923_2677_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRA
repJHM_RA59_nsp2_VIPR_ALG4_225403300_892_2646_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVVAWHVDRDPRA
*:.:**:********* *********: **.***** *** :**..:*:***:* *****
681_nsp2_VIPR_ALG4_381354058_921_2675_1_NA_NA_Rat_Murine_coronavirus VMRLQTLATLRSIDYVGQPTEDVVDGDVVVREPAHLLAADAVVKRLPRLVETMLYTDSSV
8190_nsp2_VIPR_ALG4_381354069_921_2675_1_NA_NA_Rat_Murine_coronavirus VMRLQTLATLRSIDYVGQPTEDVVDGDVVVRAPAHLLAADALVKRLPRLVETMLYTDSSV
JHM_WU_nsp2_VIPR_ALG4_397136020_935_2689_1_1947_08_14_USA_Unknown_Murine_coronavirus VMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPNAIVKRLPRLVETMLYTDSSV
A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus AMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
JHM_WU_Dns2_nsp2_VIPR_ALG4_397136010_931_2685_1_1947_08_14_USA_Unknown_Murine_coronavirus VMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPNAIVKRLPRLVETMLYTDSSV
MHV_1_nsp2_VIPR_ALG4_225403253_932_2686_1_NA_USA_Mouse_Murine_coronavirus VMRLQTLATIRSIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYADSSV
MHV_3_nsp2_VIPR_ALG4_225403263_928_2682_1_NA_USA_Mouse_Murine_coronavirus VMRMQTLATIRSIEYVGQPVEDLVDGDVVMREPAHLLSANAVVKRLPRLVEAMLYTDSSV
MHV_2_nsp2_VIPR_ALG4_6625760_951_2705_1_NA_NA_Unknown_Murine_coronavirus VMRLQTLATIRSIGYVGQPTEDLVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
MHV_A59_ORF1ab_YP_009915689_1_NA_NA_Unknown_Murine_coronavirus AMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp2_VIPR_ALG4_530291001_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus AMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp2_VIPR_ALG4_530291013_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus AMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp2_VIPR_ALG4_530291025_926_2680_1_2012_10_25_USA_Mouse_Murine_coronavirus AMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp2_VIPR_ALG4_530290989_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus AMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
MHV_JHM_IA_nsp2_VIPR_ALG4_225403289_931_2685_1_NA_USA_Mouse_Murine_coronavirus VMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPNAIVKRLPRLVETMLYTDSSV
MHV_S_3239_17_nsp2_VIPR_ALG4_380706996_952_2706_1_NA_NA_Unknown_Murine_coronavirus VMRLQTLATVRSIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
MHV_MI_nsp2_VIPR_ALG4_293330423_910_2664_1_1994_Australia_Mouse_Murine_coronavirus VMRLQTLATVRSIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
ML_10_nsp2_VIPR_ALG4_7769352_942_2696_1_NA_NA_Unknown_Murine_coronavirus AMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
ML_11_nsp2_VIPR_ALG4_7739594_951_2705_1_NA_NA_Unknown_Murine_coronavirus VMRLQTLATIRSIGYVGQPTEDLVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
Parker_ORF1ab_YP_009924369_1_NA_NA_Rat_Murine_coronavirus VMRLQTLATLRSIDYVGQPTEDVVDGDVVVREPAHLLAADALVKRLPRLVETMLYTDSSV
Penn_97_1_nsp2_VIPR_ALG4_7769341_951_2705_1_NA_NA_Unknown_Murine_coronavirus VMRLQTLATVRCIGYVGQPTEDLVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
RA59_R13_nsp2_VIPR_ALG4_225403197_928_2682_1_2006_01_01_USA_Mouse_Murine_coronavirus AMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
RA59_SJHM_nsp2_VIPR_ALG4_225403223_912_2666_1_NA_USA_Mouse_Murine_coronavirus AMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
S_nsp2_VIPR_ALG4_298199703_952_2706_1_NA_USA_Mouse_Murine_coronavirus VMRLQTLATVRSIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
RJHM_A_nsp2_VIPR_ALG4_225403216_909_2663_1_NA_USA_Mouse_Murine_coronavirus VMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPNAIVKRLPRLVETMLYTDSSV
SA59_RJHM_nsp2_VIPR_ALG4_225403245_909_2663_1_NA_USA_Mouse_Murine_coronavirus VMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPNAIVKRLPRLVETMLYTDSSV
UNKNOWN_AC_000192_nsp2_VIPR_ALG4_YP_209230_1_956_2710_1_NA_NA_Unknown_Murine_coronavirus VMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPNAIVKRLPRLVETMLYTDSSV
inf_MHV_A59_nsp2_VIPR_ALG4_225403278_926_2680_1_NA_USA_Mouse_Murine_coronavirus AMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
repA59_RJHM_nsp2_VIPR_ALG4_225403233_923_2677_1_NA_USA_Mouse_Murine_coronavirus AMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSV
repJHM_RA59_nsp2_VIPR_ALG4_225403300_892_2646_1_NA_USA_Mouse_Murine_coronavirus VMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPNAIVKRLPRLVETMLYTDSSV
.**:*****:*.* ***** **:******:* *****:.:*:*********:***:****
681_nsp2_VIPR_ALG4_381354058_921_2675_1_NA_NA_Rat_Murine_coronavirus TEFCYKTKLCDCGFITQFGYVDCCGDTCDFRGWVPGNMLDGFPCPGCSKSYMPWELEAQS
8190_nsp2_VIPR_ALG4_381354069_921_2675_1_NA_NA_Rat_Murine_coronavirus TEFCYKTKLCDCGFITQFGYVDCCGDTCDFRGWVPGNMLDGFPCPGCSKSYMPWELEAQS
JHM_WU_nsp2_VIPR_ALG4_397136020_935_2689_1_1947_08_14_USA_Unknown_Murine_coronavirus TEFCYKTKLCDCGFITQFGYVDCCGDTCGFRGWVPGNMMDGFPCPGCCKSYMPWELEAQS
A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus TEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQS
JHM_WU_Dns2_nsp2_VIPR_ALG4_397136010_931_2685_1_1947_08_14_USA_Unknown_Murine_coronavirus TEFCYKTKLCDCGFITQFGYVDCCGDTCGFRGWVPGNMMDGFPCPGCCKSYMPWELEAQS
MHV_1_nsp2_VIPR_ALG4_225403253_932_2686_1_NA_USA_Mouse_Murine_coronavirus TEFCYKTKLGDCGFITQFGYVDCCGDACDFRGWVPGNMMDGFPCPGCSRSYMPWELEAQS
MHV_3_nsp2_VIPR_ALG4_225403263_928_2682_1_NA_USA_Mouse_Murine_coronavirus TEFCYKTKLCDCGFITQFGYVDCCGDTCDFRGWVPGNMMDGFPCPGCSKNYMPWELEAQS
MHV_2_nsp2_VIPR_ALG4_6625760_951_2705_1_NA_NA_Unknown_Murine_coronavirus TEFCYKTKLCDCGFITQFGYVDCCGDACDFRGWVPGNMMDGFLCPGCSKSYMPWELEAQS
MHV_A59_ORF1ab_YP_009915689_1_NA_NA_Unknown_Murine_coronavirus TEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQS
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp2_VIPR_ALG4_530291001_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus TEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQS
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp2_VIPR_ALG4_530291013_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus TEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQS
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp2_VIPR_ALG4_530291025_926_2680_1_2012_10_25_USA_Mouse_Murine_coronavirus TEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQS
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp2_VIPR_ALG4_530290989_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus TEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQS
MHV_JHM_IA_nsp2_VIPR_ALG4_225403289_931_2685_1_NA_USA_Mouse_Murine_coronavirus TEFCYKTKLCDCGFITQFGYVDCCGDTCGFRGWVPGNMMDGFPCPGCCKSYMPWELEAQS
MHV_S_3239_17_nsp2_VIPR_ALG4_380706996_952_2706_1_NA_NA_Unknown_Murine_coronavirus TEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQS
MHV_MI_nsp2_VIPR_ALG4_293330423_910_2664_1_1994_Australia_Mouse_Murine_coronavirus TEFCYKTKLCNCGFITQFGYVDCCGDTCDFRGWVPGNMMDGFPCPGCSKNYMPWELEAQS
ML_10_nsp2_VIPR_ALG4_7769352_942_2696_1_NA_NA_Unknown_Murine_coronavirus TEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQS
ML_11_nsp2_VIPR_ALG4_7739594_951_2705_1_NA_NA_Unknown_Murine_coronavirus TEFCYKTKLCDCGFITQFGYVDCCGDACDFRGWVPGNMMDGFLCPGCSKSYMPWELEAQS
Parker_ORF1ab_YP_009924369_1_NA_NA_Rat_Murine_coronavirus TEFCYKTKLCDCGFITQFGYVDCCGDTCDFRGWVPGNMLDGFPCPGCSKSYMPWELEAQS
Penn_97_1_nsp2_VIPR_ALG4_7769341_951_2705_1_NA_NA_Unknown_Murine_coronavirus TEFCYKTKLCDCGFITQFGYVDCCGDACDFRGWVPGNMMDGFLCPGCSKSYMPWELEAQS
RA59_R13_nsp2_VIPR_ALG4_225403197_928_2682_1_2006_01_01_USA_Mouse_Murine_coronavirus TEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQS
RA59_SJHM_nsp2_VIPR_ALG4_225403223_912_2666_1_NA_USA_Mouse_Murine_coronavirus TEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQS
S_nsp2_VIPR_ALG4_298199703_952_2706_1_NA_USA_Mouse_Murine_coronavirus TEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQS
RJHM_A_nsp2_VIPR_ALG4_225403216_909_2663_1_NA_USA_Mouse_Murine_coronavirus TEFCYKTKLCDCGFITQFGYVDCCGDTCGFRGWVPGNMMDGFPCPGCCKSYMPWELEAQS
SA59_RJHM_nsp2_VIPR_ALG4_225403245_909_2663_1_NA_USA_Mouse_Murine_coronavirus TEFCYKTKLCDCGFITQFGYVDCCGDTCGFRGWVPGNMMDGFPCPGCCKSYMPWELEAQS
UNKNOWN_AC_000192_nsp2_VIPR_ALG4_YP_209230_1_956_2710_1_NA_NA_Unknown_Murine_coronavirus TEFCYKTKLCDCGFITQFGYVDCCGDTCGFRGWVPGNMMDGFPCPGCCKSYMPWELEAQS
inf_MHV_A59_nsp2_VIPR_ALG4_225403278_926_2680_1_NA_USA_Mouse_Murine_coronavirus TEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQS
repA59_RJHM_nsp2_VIPR_ALG4_225403233_923_2677_1_NA_USA_Mouse_Murine_coronavirus TEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQS
repJHM_RA59_nsp2_VIPR_ALG4_225403300_892_2646_1_NA_USA_Mouse_Murine_coronavirus TEFCYKTKLCDCGFITQFGYVDCCGDTCGFRGWVPGNMMDGFPCPGCCKSYMPWELEAQS
********* :***************:*.*****.***:*** **** :.**********
681_nsp2_VIPR_ALG4_381354058_921_2675_1_NA_NA_Rat_Murine_coronavirus SGVIPEGGVLFTQSTDTVNREAFKLYGHAVVPFGSAVYWSPYPGMWLPVVWSSVKSYSGL
8190_nsp2_VIPR_ALG4_381354069_921_2675_1_NA_NA_Rat_Murine_coronavirus SGVIPEGGVLFTQSTDTVNREAFKLYGHAVVPFGSAVYWSPYPGMWLPVVWSSVKSYSGL
JHM_WU_nsp2_VIPR_ALG4_397136020_935_2689_1_1947_08_14_USA_Unknown_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYL
A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGL
JHM_WU_Dns2_nsp2_VIPR_ALG4_397136010_931_2685_1_1947_08_14_USA_Unknown_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYL
MHV_1_nsp2_VIPR_ALG4_225403253_932_2686_1_NA_USA_Mouse_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVAPFGSAVYWSPYPGMWLPVIWSSVKSYSGL
MHV_3_nsp2_VIPR_ALG4_225403263_928_2682_1_NA_USA_Mouse_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAAYWSPYPGMWLPVIWSSVKSYSGL
MHV_2_nsp2_VIPR_ALG4_6625760_951_2705_1_NA_NA_Unknown_Murine_coronavirus SGVIPKGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPYPGMWLPVIWSSVKSYADL
MHV_A59_ORF1ab_YP_009915689_1_NA_NA_Unknown_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGL
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp2_VIPR_ALG4_530291001_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGL
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp2_VIPR_ALG4_530291013_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGL
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp2_VIPR_ALG4_530291025_926_2680_1_2012_10_25_USA_Mouse_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGL
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp2_VIPR_ALG4_530290989_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGL
MHV_JHM_IA_nsp2_VIPR_ALG4_225403289_931_2685_1_NA_USA_Mouse_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYL
MHV_S_3239_17_nsp2_VIPR_ALG4_380706996_952_2706_1_NA_NA_Unknown_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGL
MHV_MI_nsp2_VIPR_ALG4_293330423_910_2664_1_1994_Australia_Mouse_Murine_coronavirus SGVIPEGAVLFTVSNDTVNRESFKIYGHAVVPFGGCVYWSPYPGMWLPVIWSSVKSYSGL
ML_10_nsp2_VIPR_ALG4_7769352_942_2696_1_NA_NA_Unknown_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGL
ML_11_nsp2_VIPR_ALG4_7739594_951_2705_1_NA_NA_Unknown_Murine_coronavirus SGVIPKGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPYPGMWLPVIWSSVKSYADL
Parker_ORF1ab_YP_009924369_1_NA_NA_Rat_Murine_coronavirus SGVIPEGGVLFTQSTDTVNREAFKLYGHAVVPFGSAVYWSPYPGMWLPVVWSSVKSYSGL
Penn_97_1_nsp2_VIPR_ALG4_7769341_951_2705_1_NA_NA_Unknown_Murine_coronavirus SGVIPKGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPYPGMWLPVIWSSVKSYADL
RA59_R13_nsp2_VIPR_ALG4_225403197_928_2682_1_2006_01_01_USA_Mouse_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGL
RA59_SJHM_nsp2_VIPR_ALG4_225403223_912_2666_1_NA_USA_Mouse_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGL
S_nsp2_VIPR_ALG4_298199703_952_2706_1_NA_USA_Mouse_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGL
RJHM_A_nsp2_VIPR_ALG4_225403216_909_2663_1_NA_USA_Mouse_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYL
SA59_RJHM_nsp2_VIPR_ALG4_225403245_909_2663_1_NA_USA_Mouse_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYL
UNKNOWN_AC_000192_nsp2_VIPR_ALG4_YP_209230_1_956_2710_1_NA_NA_Unknown_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYL
inf_MHV_A59_nsp2_VIPR_ALG4_225403278_926_2680_1_NA_USA_Mouse_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGL
repA59_RJHM_nsp2_VIPR_ALG4_225403233_923_2677_1_NA_USA_Mouse_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGL
repJHM_RA59_nsp2_VIPR_ALG4_225403300_892_2646_1_NA_USA_Mouse_Murine_coronavirus SGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYL
*****:*.**** *.******:**:*****.***...**** *******:*******: *
681_nsp2_VIPR_ALG4_381354058_921_2675_1_NA_NA_Rat_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLDQRATLGLDDVYHRQLLVNRGDYSLL
8190_nsp2_VIPR_ALG4_381354069_921_2675_1_NA_NA_Rat_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLDQRATLGLDDVYHRQLLVNRGDYSLL
JHM_WU_nsp2_VIPR_ALG4_397136020_935_2689_1_1947_08_14_USA_Unknown_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
JHM_WU_Dns2_nsp2_VIPR_ALG4_397136010_931_2685_1_1947_08_14_USA_Unknown_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
MHV_1_nsp2_VIPR_ALG4_225403253_932_2686_1_NA_USA_Mouse_Murine_coronavirus TYTGVVGCKAIVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
MHV_3_nsp2_VIPR_ALG4_225403263_928_2682_1_NA_USA_Mouse_Murine_coronavirus TYTGVVGCKAIVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
MHV_2_nsp2_VIPR_ALG4_6625760_951_2705_1_NA_NA_Unknown_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
MHV_A59_ORF1ab_YP_009915689_1_NA_NA_Unknown_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp2_VIPR_ALG4_530291001_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp2_VIPR_ALG4_530291013_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp2_VIPR_ALG4_530291025_926_2680_1_2012_10_25_USA_Mouse_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp2_VIPR_ALG4_530290989_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
MHV_JHM_IA_nsp2_VIPR_ALG4_225403289_931_2685_1_NA_USA_Mouse_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLL
MHV_S_3239_17_nsp2_VIPR_ALG4_380706996_952_2706_1_NA_NA_Unknown_Murine_coronavirus TYTGVVGCKAIVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
MHV_MI_nsp2_VIPR_ALG4_293330423_910_2664_1_1994_Australia_Mouse_Murine_coronavirus TYTGAVGCKAIVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
ML_10_nsp2_VIPR_ALG4_7769352_942_2696_1_NA_NA_Unknown_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
ML_11_nsp2_VIPR_ALG4_7739594_951_2705_1_NA_NA_Unknown_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
Parker_ORF1ab_YP_009924369_1_NA_NA_Rat_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLDQRATLGLDDVYHRQLLVNRGDYSLL
Penn_97_1_nsp2_VIPR_ALG4_7769341_951_2705_1_NA_NA_Unknown_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
RA59_R13_nsp2_VIPR_ALG4_225403197_928_2682_1_2006_01_01_USA_Mouse_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
RA59_SJHM_nsp2_VIPR_ALG4_225403223_912_2666_1_NA_USA_Mouse_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
S_nsp2_VIPR_ALG4_298199703_952_2706_1_NA_USA_Mouse_Murine_coronavirus TYTGVVGCKAIVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
RJHM_A_nsp2_VIPR_ALG4_225403216_909_2663_1_NA_USA_Mouse_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLL
SA59_RJHM_nsp2_VIPR_ALG4_225403245_909_2663_1_NA_USA_Mouse_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLL
UNKNOWN_AC_000192_nsp2_VIPR_ALG4_YP_209230_1_956_2710_1_NA_NA_Unknown_Murine_coronavirus TYTGVVGCKAIVQETDAICRFLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
inf_MHV_A59_nsp2_VIPR_ALG4_225403278_926_2680_1_NA_USA_Mouse_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
repA59_RJHM_nsp2_VIPR_ALG4_225403233_923_2677_1_NA_USA_Mouse_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLL
repJHM_RA59_nsp2_VIPR_ALG4_225403300_892_2646_1_NA_USA_Mouse_Murine_coronavirus TYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLL
****.**********:**** *************:*** **:******************
681_nsp2_VIPR_ALG4_381354058_921_2675_1_NA_NA_Rat_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGFVPLLLDGLVPRSYYLIKSGQAYTSMMVNFSHEVID
8190_nsp2_VIPR_ALG4_381354069_921_2675_1_NA_NA_Rat_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGFVPLLLDGLVPRSYYLIKSGQAYTSMMVNFSHEVID
JHM_WU_nsp2_VIPR_ALG4_397136020_935_2689_1_1947_08_14_USA_Unknown_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSLMVNFSREVVD
A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTD
JHM_WU_Dns2_nsp2_VIPR_ALG4_397136010_931_2685_1_1947_08_14_USA_Unknown_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSLMVNFSREVVD
MHV_1_nsp2_VIPR_ALG4_225403253_932_2686_1_NA_USA_Mouse_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTD
MHV_3_nsp2_VIPR_ALG4_225403263_928_2682_1_NA_USA_Mouse_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTD
MHV_2_nsp2_VIPR_ALG4_6625760_951_2705_1_NA_NA_Unknown_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTD
MHV_A59_ORF1ab_YP_009915689_1_NA_NA_Unknown_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTD
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp2_VIPR_ALG4_530291001_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTD
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp2_VIPR_ALG4_530291013_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTD
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp2_VIPR_ALG4_530291025_926_2680_1_2012_10_25_USA_Mouse_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTD
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp2_VIPR_ALG4_530290989_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTD
MHV_JHM_IA_nsp2_VIPR_ALG4_225403289_931_2685_1_NA_USA_Mouse_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSLMVNFSREVVD
MHV_S_3239_17_nsp2_VIPR_ALG4_380706996_952_2706_1_NA_NA_Unknown_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSVMVNFSREVID
MHV_MI_nsp2_VIPR_ALG4_293330423_910_2664_1_1994_Australia_Mouse_Murine_coronavirus LENLDLFIKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSVMVNFSREVVD
ML_10_nsp2_VIPR_ALG4_7769352_942_2696_1_NA_NA_Unknown_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTD
ML_11_nsp2_VIPR_ALG4_7739594_951_2705_1_NA_NA_Unknown_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTD
Parker_ORF1ab_YP_009924369_1_NA_NA_Rat_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGFVPLLLDGLVPRSYYLIKSGQAYTSMMVNFSHEVID
Penn_97_1_nsp2_VIPR_ALG4_7769341_951_2705_1_NA_NA_Unknown_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTD
RA59_R13_nsp2_VIPR_ALG4_225403197_928_2682_1_2006_01_01_USA_Mouse_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTD
RA59_SJHM_nsp2_VIPR_ALG4_225403223_912_2666_1_NA_USA_Mouse_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTD
S_nsp2_VIPR_ALG4_298199703_952_2706_1_NA_USA_Mouse_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSVMVNFSREVID
RJHM_A_nsp2_VIPR_ALG4_225403216_909_2663_1_NA_USA_Mouse_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLAPLLLDGLVPRSYYLIKSGQAFTSLMVNFSREVVD
SA59_RJHM_nsp2_VIPR_ALG4_225403245_909_2663_1_NA_USA_Mouse_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSLMVNFSREVVD
UNKNOWN_AC_000192_nsp2_VIPR_ALG4_YP_209230_1_956_2710_1_NA_NA_Unknown_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSLMVNFSREVVD
inf_MHV_A59_nsp2_VIPR_ALG4_225403278_926_2680_1_NA_USA_Mouse_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTD
repA59_RJHM_nsp2_VIPR_ALG4_225403233_923_2677_1_NA_USA_Mouse_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTD
repJHM_RA59_nsp2_VIPR_ALG4_225403300_892_2646_1_NA_USA_Mouse_Murine_coronavirus LENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSLMVNFSREVVD
***:***:****************:.********************:**:*****:** *
681_nsp2_VIPR_ALG4_381354058_921_2675_1_NA_NA_Rat_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKFTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL
8190_nsp2_VIPR_ALG4_381354069_921_2675_1_NA_NA_Rat_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKFTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL
JHM_WU_nsp2_VIPR_ALG4_397136020_935_2689_1_1947_08_14_USA_Unknown_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVRKITEWFDLAVDTAASAAGWL
A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL
JHM_WU_Dns2_nsp2_VIPR_ALG4_397136010_931_2685_1_1947_08_14_USA_Unknown_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVRKITEWFDLAVDTAASAAGWL
MHV_1_nsp2_VIPR_ALG4_225403253_932_2686_1_NA_USA_Mouse_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVRKITEWFDLAVDIAASAAGWL
MHV_3_nsp2_VIPR_ALG4_225403263_928_2682_1_NA_USA_Mouse_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDTAASAAGWL
MHV_2_nsp2_VIPR_ALG4_6625760_951_2705_1_NA_NA_Unknown_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDTAASAAGWL
MHV_A59_ORF1ab_YP_009915689_1_NA_NA_Unknown_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp2_VIPR_ALG4_530291001_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp2_VIPR_ALG4_530291013_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp2_VIPR_ALG4_530291025_926_2680_1_2012_10_25_USA_Mouse_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp2_VIPR_ALG4_530290989_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL
MHV_JHM_IA_nsp2_VIPR_ALG4_225403289_931_2685_1_NA_USA_Mouse_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVRKITEWFDLAVDTAASAAGWL
MHV_S_3239_17_nsp2_VIPR_ALG4_380706996_952_2706_1_NA_NA_Unknown_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL
MHV_MI_nsp2_VIPR_ALG4_293330423_910_2664_1_1994_Australia_Mouse_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDTAASAAGWL
ML_10_nsp2_VIPR_ALG4_7769352_942_2696_1_NA_NA_Unknown_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKAWGVAVVRKITEWFDLAVDIAASAAGWL
ML_11_nsp2_VIPR_ALG4_7739594_951_2705_1_NA_NA_Unknown_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDTAASAAGWL
Parker_ORF1ab_YP_009924369_1_NA_NA_Rat_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKFTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL
Penn_97_1_nsp2_VIPR_ALG4_7769341_951_2705_1_NA_NA_Unknown_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDTAASAAGWL
RA59_R13_nsp2_VIPR_ALG4_225403197_928_2682_1_2006_01_01_USA_Mouse_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL
RA59_SJHM_nsp2_VIPR_ALG4_225403223_912_2666_1_NA_USA_Mouse_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL
S_nsp2_VIPR_ALG4_298199703_952_2706_1_NA_USA_Mouse_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL
RJHM_A_nsp2_VIPR_ALG4_225403216_909_2663_1_NA_USA_Mouse_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVRKITEWFDLAVDTAASAAGWL
SA59_RJHM_nsp2_VIPR_ALG4_225403245_909_2663_1_NA_USA_Mouse_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVRKITEWFDLAVDTAASAAGWL
UNKNOWN_AC_000192_nsp2_VIPR_ALG4_YP_209230_1_956_2710_1_NA_NA_Unknown_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKVAVRFKALGIAVVRKITEWFDLAVDTAASAAGWL
inf_MHV_A59_nsp2_VIPR_ALG4_225403278_926_2680_1_NA_USA_Mouse_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL
repA59_RJHM_nsp2_VIPR_ALG4_225403233_923_2677_1_NA_USA_Mouse_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL
repJHM_RA59_nsp2_VIPR_ALG4_225403300_892_2646_1_NA_USA_Mouse_Murine_coronavirus MCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVRKITEWFDLAVDTAASAAGWL
**********************.***:****** *:*************** ********
681_nsp2_VIPR_ALG4_381354058_921_2675_1_NA_NA_Rat_Murine_coronavirus CYQLVNGLFAVANGVITFVQEAPELVKNFVAKFRAFFKVLIDSMSVSILSGLTVVKTASN
8190_nsp2_VIPR_ALG4_381354069_921_2675_1_NA_NA_Rat_Murine_coronavirus CYQLVNGLFAVANGVITFVQEAPELVKNFVAKFRAFFKVLIDSMSVSILSGLTVVKTASN
JHM_WU_nsp2_VIPR_ALG4_397136020_935_2689_1_1947_08_14_USA_Unknown_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKTFFKVLIDSMSVSILSGLTVVKTASN
A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASN
JHM_WU_Dns2_nsp2_VIPR_ALG4_397136010_931_2685_1_1947_08_14_USA_Unknown_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKTFFKVLIDSMSVSILSGLTVVKTASN
MHV_1_nsp2_VIPR_ALG4_225403253_932_2686_1_NA_USA_Mouse_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASN
MHV_3_nsp2_VIPR_ALG4_225403263_928_2682_1_NA_USA_Mouse_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASN
MHV_2_nsp2_VIPR_ALG4_6625760_951_2705_1_NA_NA_Unknown_Murine_coronavirus CYQLVNGLFAVANGGITFLSDVPELVKNFVDKFKVFFKVLIDSMSVSVLSGLTVVKTASN
MHV_A59_ORF1ab_YP_009915689_1_NA_NA_Unknown_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASN
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp2_VIPR_ALG4_530291001_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASN
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp2_VIPR_ALG4_530291013_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASN
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp2_VIPR_ALG4_530291025_926_2680_1_2012_10_25_USA_Mouse_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASN
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp2_VIPR_ALG4_530290989_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASN
MHV_JHM_IA_nsp2_VIPR_ALG4_225403289_931_2685_1_NA_USA_Mouse_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKTFFKVLIDSMSVSILSGLTVVKTASN
MHV_S_3239_17_nsp2_VIPR_ALG4_380706996_952_2706_1_NA_NA_Unknown_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVTILSGLTVVKTASN
MHV_MI_nsp2_VIPR_ALG4_293330423_910_2664_1_1994_Australia_Mouse_Murine_coronavirus CYQLVNGLFAVANGGITFVQDVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKAASN
ML_10_nsp2_VIPR_ALG4_7769352_942_2696_1_NA_NA_Unknown_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASN
ML_11_nsp2_VIPR_ALG4_7739594_951_2705_1_NA_NA_Unknown_Murine_coronavirus CYQLVNGLFAVANGGITFLSDVPELVKNFVDKFKVFFKVLIDSMSVSVLSGLTVVKTASN
Parker_ORF1ab_YP_009924369_1_NA_NA_Rat_Murine_coronavirus CYQLVNGLFAVANGVITFVQEAPELVKNFVAKFRAFFKVLIDSMSVSILSGLTVVKTASN
Penn_97_1_nsp2_VIPR_ALG4_7769341_951_2705_1_NA_NA_Unknown_Murine_coronavirus CYQLVNGLFAVANGGITFLSDVPELVKNFVDKFKVFFKVLIDSMSVSVLSGLTVVKTASN
RA59_R13_nsp2_VIPR_ALG4_225403197_928_2682_1_2006_01_01_USA_Mouse_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASN
RA59_SJHM_nsp2_VIPR_ALG4_225403223_912_2666_1_NA_USA_Mouse_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASN
S_nsp2_VIPR_ALG4_298199703_952_2706_1_NA_USA_Mouse_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVTILSGLTVVKTASN
RJHM_A_nsp2_VIPR_ALG4_225403216_909_2663_1_NA_USA_Mouse_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKTFFKVLIDSMSVSILSGLTVVKTASN
SA59_RJHM_nsp2_VIPR_ALG4_225403245_909_2663_1_NA_USA_Mouse_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKTFFKVLIDSMSVSILSGLTVVKTASN
UNKNOWN_AC_000192_nsp2_VIPR_ALG4_YP_209230_1_956_2710_1_NA_NA_Unknown_Murine_coronavirus CYQLVNGLFAVANGVITFIQEVPELVKNFVDKFKTFFKVLIDSMSVSILSGLTVVKTASN
inf_MHV_A59_nsp2_VIPR_ALG4_225403278_926_2680_1_NA_USA_Mouse_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASN
repA59_RJHM_nsp2_VIPR_ALG4_225403233_923_2677_1_NA_USA_Mouse_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASN
repJHM_RA59_nsp2_VIPR_ALG4_225403300_892_2646_1_NA_USA_Mouse_Murine_coronavirus CYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKTFFKVLIDSMSVSILSGLTVVKTASN
************** ***:.:.******** **:.***********::********:***
681_nsp2_VIPR_ALG4_381354058_921_2675_1_NA_NA_Rat_Murine_coronavirus RVCLAGSKFYEVVQKSLSAYVLPVGCSEATCLVGESEPAVFEDDVVGVVKTPLTYQGCCK
8190_nsp2_VIPR_ALG4_381354069_921_2675_1_NA_NA_Rat_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVLPVGCSEATCLVGESEPAVFEDDVVGVVKTPLTYQGCCK
JHM_WU_nsp2_VIPR_ALG4_397136020_935_2689_1_1947_08_14_USA_Unknown_Murine_coronavirus RVCLAGSKVYEVVQKSLPAYIMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
JHM_WU_Dns2_nsp2_VIPR_ALG4_397136010_931_2685_1_1947_08_14_USA_Unknown_Murine_coronavirus RVCLAGSKVYEVVQKSLPAYIMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
MHV_1_nsp2_VIPR_ALG4_225403253_932_2686_1_NA_USA_Mouse_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKVPLTYQGCCK
MHV_3_nsp2_VIPR_ALG4_225403263_928_2682_1_NA_USA_Mouse_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
MHV_2_nsp2_VIPR_ALG4_6625760_951_2705_1_NA_NA_Unknown_Murine_coronavirus RVCLAGCKVYEVVQKRLSAYVMPVGCNEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCK
MHV_A59_ORF1ab_YP_009915689_1_NA_NA_Unknown_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp2_VIPR_ALG4_530291001_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp2_VIPR_ALG4_530291013_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp2_VIPR_ALG4_530291025_926_2680_1_2012_10_25_USA_Mouse_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp2_VIPR_ALG4_530290989_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
MHV_JHM_IA_nsp2_VIPR_ALG4_225403289_931_2685_1_NA_USA_Mouse_Murine_coronavirus RVCLAGSKVYEVVQKSLPAYIMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
MHV_S_3239_17_nsp2_VIPR_ALG4_380706996_952_2706_1_NA_NA_Unknown_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVLPVGCSEATCLVGESEPAVFEDDVVDVVKAPLIYQGCCK
MHV_MI_nsp2_VIPR_ALG4_293330423_910_2664_1_1994_Australia_Mouse_Murine_coronavirus RVCLAGSKVYAVVQKSLSAYVMPVGCSEATCLVGETGPAVFEDDVVDVVKAPLTYQGCCK
ML_10_nsp2_VIPR_ALG4_7769352_942_2696_1_NA_NA_Unknown_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
ML_11_nsp2_VIPR_ALG4_7739594_951_2705_1_NA_NA_Unknown_Murine_coronavirus RVCLAGCKVYEVVQKRLSAYVMPVGCNEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCK
Parker_ORF1ab_YP_009924369_1_NA_NA_Rat_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVLPVGCSEATCLVGESEPAVFEDDVVGVVKTPLTYQGCCK
Penn_97_1_nsp2_VIPR_ALG4_7769341_951_2705_1_NA_NA_Unknown_Murine_coronavirus RVCLAGCKVYEVVQKRLSAYVMPVGCNEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCK
RA59_R13_nsp2_VIPR_ALG4_225403197_928_2682_1_2006_01_01_USA_Mouse_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
RA59_SJHM_nsp2_VIPR_ALG4_225403223_912_2666_1_NA_USA_Mouse_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
S_nsp2_VIPR_ALG4_298199703_952_2706_1_NA_USA_Mouse_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVLPVGCSEATCLVGESEPAVFEDDVVDVVKAPLIYQGCCK
RJHM_A_nsp2_VIPR_ALG4_225403216_909_2663_1_NA_USA_Mouse_Murine_coronavirus RVCLAGSKVYEVVQKSLPAYIMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
SA59_RJHM_nsp2_VIPR_ALG4_225403245_909_2663_1_NA_USA_Mouse_Murine_coronavirus RVCLAGSKVYEVVQKSLPAYIMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
UNKNOWN_AC_000192_nsp2_VIPR_ALG4_YP_209230_1_956_2710_1_NA_NA_Unknown_Murine_coronavirus RVCLAGSKVYEVVQKSLPAYIMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
inf_MHV_A59_nsp2_VIPR_ALG4_225403278_926_2680_1_NA_USA_Mouse_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
repA59_RJHM_nsp2_VIPR_ALG4_225403233_923_2677_1_NA_USA_Mouse_Murine_coronavirus RVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
repJHM_RA59_nsp2_VIPR_ALG4_225403300_892_2646_1_NA_USA_Mouse_Murine_coronavirus RVCLAGSKVYEVVQKSLPAYIMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCK
******.*.* **** *.**::****.******** ***.*****.***.** ******
681_nsp2_VIPR_ALG4_381354058_921_2675_1_NA_NA_Rat_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
8190_nsp2_VIPR_ALG4_381354069_921_2675_1_NA_NA_Rat_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
JHM_WU_nsp2_VIPR_ALG4_397136020_935_2689_1_1947_08_14_USA_Unknown_Murine_coronavirus PPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
JHM_WU_Dns2_nsp2_VIPR_ALG4_397136010_931_2685_1_1947_08_14_USA_Unknown_Murine_coronavirus PPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
MHV_1_nsp2_VIPR_ALG4_225403253_932_2686_1_NA_USA_Mouse_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
MHV_3_nsp2_VIPR_ALG4_225403263_928_2682_1_NA_USA_Mouse_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPLVVDNDTVGVLDQCWRFPCA
MHV_2_nsp2_VIPR_ALG4_6625760_951_2705_1_NA_NA_Unknown_Murine_coronavirus PPTSFEKICVVDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCA
MHV_A59_ORF1ab_YP_009915689_1_NA_NA_Unknown_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp2_VIPR_ALG4_530291001_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp2_VIPR_ALG4_530291013_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp2_VIPR_ALG4_530291025_926_2680_1_2012_10_25_USA_Mouse_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp2_VIPR_ALG4_530290989_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
MHV_JHM_IA_nsp2_VIPR_ALG4_225403289_931_2685_1_NA_USA_Mouse_Murine_coronavirus PPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
MHV_S_3239_17_nsp2_VIPR_ALG4_380706996_952_2706_1_NA_NA_Unknown_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
MHV_MI_nsp2_VIPR_ALG4_293330423_910_2664_1_1994_Australia_Mouse_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
ML_10_nsp2_VIPR_ALG4_7769352_942_2696_1_NA_NA_Unknown_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
ML_11_nsp2_VIPR_ALG4_7739594_951_2705_1_NA_NA_Unknown_Murine_coronavirus PPTSFEKICVVDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCA
Parker_ORF1ab_YP_009924369_1_NA_NA_Rat_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
Penn_97_1_nsp2_VIPR_ALG4_7769341_951_2705_1_NA_NA_Unknown_Murine_coronavirus PPTSFEKICVVDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCA
RA59_R13_nsp2_VIPR_ALG4_225403197_928_2682_1_2006_01_01_USA_Mouse_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
RA59_SJHM_nsp2_VIPR_ALG4_225403223_912_2666_1_NA_USA_Mouse_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
S_nsp2_VIPR_ALG4_298199703_952_2706_1_NA_USA_Mouse_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
RJHM_A_nsp2_VIPR_ALG4_225403216_909_2663_1_NA_USA_Mouse_Murine_coronavirus PPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
SA59_RJHM_nsp2_VIPR_ALG4_225403245_909_2663_1_NA_USA_Mouse_Murine_coronavirus PPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
UNKNOWN_AC_000192_nsp2_VIPR_ALG4_YP_209230_1_956_2710_1_NA_NA_Unknown_Murine_coronavirus PPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
inf_MHV_A59_nsp2_VIPR_ALG4_225403278_926_2680_1_NA_USA_Mouse_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
repA59_RJHM_nsp2_VIPR_ALG4_225403233_923_2677_1_NA_USA_Mouse_Murine_coronavirus PPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
repJHM_RA59_nsp2_VIPR_ALG4_225403300_892_2646_1_NA_USA_Mouse_Murine_coronavirus PPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
**:******:***************:******:************
>681_nsp2_VIPR_ALG4_381354058_921_2675_1_NA_NA_Rat_Murine_coronavirus GTTAAACCCATCCTTTTTGTGGACCAGTATGGTTGTGACTATACTGGATGTCTCGCCAAGGGTCTTGAGGACTATGGTGATCTTACTTTGAGTGAGATGAAGGAGTTGTTCCCTGTGTGGCGTGACTCCTTAGATAATGAAGTAGTTGTGGCCTGGCATGTTGATCGTGACCCGCGGGCTGTTATGCGTCTGCAGACTCTTGCTACTCTACGTAGCATTGATTATGTGGGCCAACCGACAGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTTCTAGCAGCTGATGCCGTTGTTAAAAGACTCCCCCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTTTGTTATAAAACCAAGCTGTGTGATTGTGGTTTTATCACGCAGTTTGGCTATGTGGATTGCTGTGGTGACACCTGCGATTTTCGCGGATGGGTACCGGGCAATATGCTGGATGGCTTTCCTTGCCCAGGGTGTAGCAAAAGTTACATGCCATGGGAACTGGAAGCTCAATCATCAGGTGTAATCCCAGAAGGAGGTGTTCTGTTTACTCAGAGCACTGATACGGTGAATCGTGAGGCTTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCTTACCCAGGTATGTGGCTTCCAGTAGTTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTTGTTGGTTGTAAGGCAATTGTTCAGGAGACAGATGCTATATGCCGGTCTCTATATATGGACTACGTTCAGCACAAGTGTGGCAATCTCGATCAGAGAGCTACTCTTGGATTGGACGATGTCTATCATAGACAATTGCTTGTAAATAGAGGTGACTATAGTCTCCTACTTGAAAATGTAGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGTTTTGTACCTCTTCTGCTAGATGGTTTAGTGCCCCGCAGTTATTATTTAATTAAGAGTGGCCAGGCCTACACCTCGATGATGGTTAATTTTAGCCATGAGGTGATTGACATGTGTATGGACATGGCATTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGTTTACTGGCAAACTAGCCGTGCGCTTTAAGGCGTTAGGTGTAGCCGTTGTCAGGAAAATTACTGAATGGTTTGATCTTGCCGTGGACATTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTCGCAGTGGCCAATGGTGTCATAACATTTGTTCAGGAGGCTCCTGAGCTAGTCAAGAATTTTGTTGCCAAGTTCAGGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAACAGGGTATGTCTGGCTGGCAGTAAGTTTTATGAAGTTGTGCAGAAGTCTTTGTCTGCATATGTTTTGCCTGTTGGTTGCAGTGAGGCCACTTGTTTAGTGGGCGAAAGTGAACCTGCAGTTTTTGAAGATGATGTTGTTGGTGTGGTTAAGACCCCATTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTAGATAAATTATATATGGCCAAGTGTGGTGATCAATTCTACCCCGTGGTTGTTGATAACGACACTGTCGGCGTGTTAGATCAGTGCTGGAGATTCCCCTGTGCG >8190_nsp2_VIPR_ALG4_381354069_921_2675_1_NA_NA_Rat_Murine_coronavirus GTTAAACCCATCCTTTTTGTGGACCAGTATGGTTGTGACTATACTGGATGTCTCGCCAAGGGTCTTGAGGACTATGGTGACCTTACTTTGAGTGAGATGAAGGAGTTATTCCCTGTGTGGCGTGAATCCTTAGATAATGAAGTAGTTGTGGCCTGGCATGTTGATCGTGACCCGCGGGCTGTTATGCGTCTGCAGACTCTTGCTACTCTACGTAGCATTGATTATGTGGGCCAACCGACAGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGCGCCTGCTCATCTTCTAGCAGCTGATGCCCTTGTTAAAAGACTCCCCCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTTTGTTATAAAACCAAGCTGTGTGATTGTGGTTTTATCACGCAGTTTGGCTATGTGGATTGCTGTGGTGACACCTGCGATTTTCGCGGATGGGTACCGGGCAATATGCTGGATGGTTTTCCTTGCCCAGGGTGTAGCAAAAGTTACATGCCATGGGAACTGGAAGCTCAATCATCAGGTGTAATCCCAGAAGGAGGTGTTCTGTTTACTCAGAGCACTGATACGGTGAATCGTGAGGCTTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCTTACCCAGGTATGTGGCTTCCAGTAGTTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTTGTTGGTTGTAAGGCAATTGTTCAGGAGACAGATGCTATATGCCGGTCTCTATATATGGACTACGTTCAGCACAAGTGTGGCAATCTCGATCAGAGAGCTACTCTTGGATTGGACGATGTCTATCATAGACAATTGCTTGTAAATAGAGGTGACTATAGTCTCCTACTTGAAAATGTAGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTTGCCACCTGCGGAGATGGTTTTGTACCTCTTCTGCTAGATGGTTTAGTGCCCCGCAGTTATTATTTAATTAAGAGTGGCCAGGCCTACACCTCGATGATGGTTAATTTTAGCCATGAGGTGATTGACATGTGTATGGACATGGCATTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGTTTACTGGCAAACTAGCCGTGCGCTTTAAGGCGTTAGGTGTAGCCGTTGTCAGGAAAATTACTGAATGGTTTGATCTTGCCGTGGACATTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTCGCAGTGGCCAATGGTGTCATAACATTTGTTCAGGAGGCTCCTGAGCTAGTCAAGAATTTTGTTGCCAAGTTCAGGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAACAGGGTATGTCTGGCTGGCAGTAAGGTTTATGAGGTTGTGCAGAAGTCTTTGTCTGCATATGTTTTGCCTGTTGGTTGCAGTGAGGCCACTTGTTTAGTGGGCGAAAGTGAACCTGCAGTTTTTGAAGATGATGTTGTTGGTGTGGTTAAGACCCCATTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTAGATAAATTATATATGGCCAAGTGTGGTGATCAATTCTACCCCGTGGTTGTTGATAACGACACTGTCGGCGTGTTAGATCAGTGCTGGAGATTCCCCTGTGCG >JHM_WU_nsp2_VIPR_ALG4_397136020_935_2689_1_1947_08_14_USA_Unknown_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTCGAAGACTATGGCGACCTTACTTTGAGTGAGATGAAGGAGTTGTCCCCTGTGTGGCGTGACTCCTTAGATAATGAAGTTGTTGTGGCTTGGCATGTTGATCGTGACCCTCGAGCTGTGATGCGCCTGCAGACTCTGGCTACTGTACGTAGCATTGAGTATGTGGGCCAACCGATCGAGGATATGGTTGATGGGGATGTGGTGATGCGTGAACCCGCTCACCTCCTCGCGCCCAATGCCATTGTTAAAAGGCTTCCCCGTCTGGTGGAGACTATGCTGTATACGGATTCTTCCGTTACAGAGTTTTGTTATAAAACTAAGTTGTGTGATTGTGGTTTTATCACACAGTTTGGCTATGTTGATTGCTGTGGTGACACCTGTGGTTTTCGTGGGTGGGTTCCTGGCAATATGATGGATGGCTTTCCATGCCCTGGGTGTTGTAAAAGTTACATGCCTTGGGAGTTGGAAGCTCAATCATCGGGTGTTATACCAGAAGGAGGTGTTCTATTTACGCAGAGCACTGACACAGTGAATCGTGAGTCTTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTGGTGCTGCGTATTGGAGTCCATATCCTGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATATTCCTATTTGACTTATACAGGAGTTGTTGGTTGTAAGGCAATTGTCCAGGAGACAGACGCTATATGTCGTTCTCTGTACATGGACTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGGGCTATCCTTGGATTGGACGATGTCTATCATAGACAGTTGCTTGTTAACAGGGGTGACTATAGTCTCCTCCTTGAAAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGCCTTGTACCCCTTCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTAATTAAGAGTGGTCAAGCTTTTACCTCATTGATGGTTAACTTTAGCCGAGAGGTAGTTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTAGCAGTGCGCTTTAAAGCGTTAGGCATTGCTGTTGTCAGAAAAATTACTGAATGGTTTGACTTAGCCGTGGACACTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGACATTTTTCAAGGTCTTGATCGACTCTATGTCGGTCTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTATGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTCTGCCTGCATATATTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTCTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCGTTAACATATCAAGGCTGTTGTAAGCCACCCTCTTCTTTCGAGAAGATTTGTATTGTGGATAAATTATATATGGCCAAGTGTGGTGATCAATTCTACCCTGTGGTGGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTCCCCTGCGCG >A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTTGAGGACTATGGCGATCTCACCTTGAGTGAGATGAAGGAGTTGTTCCCTGTGTGGCGTGACTCCTTGGATAGTGAAGTCCTTGTGGCTTGGCACGTTGATCGAGATCCTCGGGCTGCTATGCGTCTGCAGACTCTTGCTACTGTACGTTGCATTGATTATGTGGGCCAACCGACCGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTTCTCGCAGCCAATGCCATTGTTAAAAGACTCCCCCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTCTGTTATAAAACCAAGCTGTGTGAATGCGGTTTTATCACGCAGTTTGGCTATGTGGATTGTTGTGGTGACACCTGCGATTTTCGTGGGTGGGTTGCCGGCAATATGATGGATGGCTTTCCATGTCCAGGGTGTACCAAAAATTATATGCCCTGGGAATTGGAGGCCCAGTCATCAGGTGTTATACCAGAAGGAGGTGTTCTATTCACTCAGAGCACTGATACAGTGAATCGTGAGTCCTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCTTGCCCAGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTAGTTGGTTGTAAGGCAATTGTTCAAGAGACAGACGCTATATGTCGTTCTCTGTATATGGATTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGAGCTATCCTTGGATTGGACGATGTCTATCATAGACAGTTGCTTGTGAATAGGGGTGACTATAGTCTCCTCCTTGAGAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGTCTTGTACCCCTCCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTGATTAAGAGTGGTCAAGCTTTCACCTCTATGATGGTTAATTTTAGCCATGAGGTGACTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTGGCCGTGCGCTTTAAAGCGTTGGGTGTAGCCGTTGTCAGAAAAATTACTGAATGGTTTGATTTAGCCGTGGACATTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTGTGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTTTGTCTGCATATGTTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTTTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTGGATAAATTGTATATGGCCAAGTGTGGTGATCAATTTTACCCTGTGGTTGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTTCCCTGTGCG >JHM_WU_Dns2_nsp2_VIPR_ALG4_397136010_931_2685_1_1947_08_14_USA_Unknown_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTCGAAGACTATGGCGACCTTACTTTGAGTGAGATGAAGGAGTTGTCCCCTGTGTGGCGTGACTCCTTAGATAATGAAGTTGTTGTGGCTTGGCATGTTGATCGTGACCCTCGAGCTGTGATGCGCCTGCAGACTCTGGCTACTGTACGTAGCATTGAGTATGTGGGCCAACCGATCGAGGATATGGTTGATGGGGATGTGGTGATGCGTGAACCCGCTCACCTCCTCGCGCCCAATGCCATTGTTAAAAGGCTTCCCCGTCTGGTGGAGACTATGCTGTATACGGATTCTTCCGTTACAGAGTTTTGTTATAAAACTAAGTTGTGTGATTGTGGTTTTATCACACAGTTTGGCTATGTTGATTGCTGTGGTGACACCTGTGGTTTTCGTGGGTGGGTTCCTGGCAATATGATGGATGGCTTTCCATGCCCTGGGTGTTGTAAAAGTTACATGCCTTGGGAGTTGGAAGCTCAATCATCGGGTGTTATACCAGAAGGAGGTGTTCTATTTACGCAGAGCACTGACACAGTGAATCGTGAGTCTTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTGGTGCTGCGTATTGGAGTCCATATCCTGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATATTCCTATTTGACTTATACAGGAGTTGTTGGTTGTAAGGCAATTGTCCAGGAGACAGACGCTATATGTCGTTCTCTGTACATGGACTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGGGCTATCCTTGGATTGGACGATGTCTATCATAGACAGTTGCTTGTTAACAGGGGTGACTATAGTCTCCTCCTTGAAAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGCCTTGTACCCCTTCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTAATTAAGAGTGGTCAAGCTTTTACCTCATTGATGGTTAACTTTAGCCGAGAGGTAGTTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTAGCAGTGCGCTTTAAAGCGTTAGGCATTGCTGTTGTCAGAAAAATTACTGAATGGTTTGACTTAGCCGTGGACACTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGACATTTTTCAAGGTCTTGATCGACTCTATGTCGGTCTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTATGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTCTGCCTGCATATATTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTCTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCGTTAACATATCAAGGCTGTTGTAAGCCACCCTCTTCTTTCGAGAAGATTTGTATTGTGGATAAATTATATATGGCCAAGTGTGGTGATCAATTCTACCCTGTGGTGGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTCCCCTGCGCG >MHV_1_nsp2_VIPR_ALG4_225403253_932_2686_1_NA_USA_Mouse_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTTGAAGACTATGGCGACCTTACTTTGAGTGAGATGAAGGAGTTGTTCCCTGTGTGGCGTGACTCCTTAGATAAAGAAGTTGTTGTGGCTTGGCATGTTGATCGTGACCCTCGGGCTGTTATGCGTCTGCAGACCCTTGCTACTATACGTAGCATTGATTATGTGGGCCAACCGACCGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAACCTGCACATCTCCTAGCAGCCAATGCCATTGTTAAAAGACTCCCTCGTTTGGTGGAGACTATGCTGTATGCGGATTCGTCCGTTACAGAATTTTGTTATAAAACTAAGCTGGGTGATTGCGGTTTTATCACACAGTTTGGCTATGTGGATTGCTGTGGTGACGCATGCGATTTTCGCGGCTGGGTACCAGGCAATATGATGGATGGTTTTCCATGCCCTGGGTGTAGCCGAAGTTACATGCCCTGGGAGTTGGAAGCTCAGTCATCAGGTGTTATACCAGAAGGAGGTGTTCTGTTTACTCAGAGCACTGATACAGTGAACCGCGAGTCTTTTAAGCTCTACGGTCATGCTGTTGCGCCTTTTGGTTCTGCTGTGTACTGGAGCCCGTATCCAGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTTGTTGGTTGTAAGGCAATTGTCCAGGAGACAGAGGCTATATGCCGCTCCCTGTATATGGACTACGTTCAGCACAAGTGTGGCAATCTCGAGCAGAGGGCTATTCTTGGATTGGACGATGTCTACCATAGACAATTGCTTGTTAATAGGGGCGACTACAGTCTCCTCCTTGAAAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGTCTTGTACCTCTGCTATTAGATGGTTTAGTGCCCCGCAGTTATTATCTAATTAAGAGTGGCCAGGCTTTTACCTCGATGATGGTTAATTTTAGCCATGAGGTGACTGACATGTGTATGGACATGGCGCTATTGTTCATGCATGATGTTAAAGTGGCCACTAAATATGTTAAAAAGGTTACTGGCAAACTGGCCGTGCGCTTTAAAGCGTTGGGCATAGCTGTTGTCAGAAAAATTACTGAATGGTTTGATCTTGCCGTGGACATTGCTGCTAGTGCCGCTGGATGGCTCTGCTACCAGCTGGTAAATGGCTTATTTGCTGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTATGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTTTGTCTGCATATGTTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTTTTTGAAGATGATGTTGTTGATGTGGTTAAAGTCCCGTTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTGGATAAATTATATATGGCCAAGTGTGGTGATCAATTCTACCCTGTGGTTGTTGATAACGACACTGTTGGCGTGTTAGATCAATGCTGGAGGTTCCCTTGCGCG >MHV_3_nsp2_VIPR_ALG4_225403263_928_2682_1_NA_USA_Mouse_Murine_coronavirus GTTAATCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGTTGCCTTGCTAAAGGCCTTGAGGACTATGGCGAGTGCACCTTGGATGAAATGAAGGAGTTATTCCCTGTGTGGCGTGATTCCTTAGGGAGTGATGTTATTGTGGCTTGGCAGGTTGTGCGTGATCCTCGGGCTGTTATGCGTATGCAGACTCTAGCTACTATACGTAGCATCGAGTATGTTGGCCAGCCTGTTGAAGATCTGGTTGATGGTGATGTAGTGATGCGAGAGCCCGCTCATCTCCTCTCTGCCAATGCTGTAGTTAAAAGACTCCCCCGCCTGGTGGAGGCTATGCTGTATACGGATTCTTCCGTTACAGAATTTTGTTATAAAACTAAGTTGTGTGATTGTGGCTTTATCACACAGTTTGGTTATGTTGATTGCTGTGGAGATACCTGCGATTTTCGTGGCTGGGTCCCTGGCAATATGATGGATGGCTTCCCCTGCCCTGGCTGTAGTAAAAACTACATGCCATGGGAATTAGAGGCTCAGTCATCAGGTGTCATACCAGAAGGAGGTGTTCTGTTTACTCAGAGCACTGATACAGTGAACCGCGAGTCTTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGCGTACTGGAGCCCGTATCCAGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTTGTTGGTTGTAAGGCAATTGTCCAGGAGACAGAGGCTATATGCCGTTCTCTGTATATGGACTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGGGCTATTCTTGGATTGGACGATGTCTACCATAGACAATTGCTTGTTAATAGGGGCGACTACAGTCTCCTCCTTGAAAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGTCTTGTACCTCTGCTATTAGATGGTTTAGTGCCCCGCAGTTATTATCTAATTAAGAGTGGCCAGGCTTTTACCTCGATGATGGTTAATTTTAGCCATGAGGTGACTGACATGTGTATGGACATGGCATTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTAGCCGTGCGCTTTAAGGCGTTAGGTGTAGCCGTTGTCAGGAAAATTACTGAATGGTTTGATTTAGCCGTGGACACTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTATGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTTTGTCTGCATATGTTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTTTTTGAAGATGATGTTGTTGATGTGGTCAAAGCCCCGTTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTGGATAAATTATATATGGCCAAGTGTGGTGATCAATTTTACCCTCTGGTTGTTGATAACGACACTGTTGGCGTTTTAGATCAATGCTGGAGGTTTCCTTGCGCG >MHV_2_nsp2_VIPR_ALG4_6625760_951_2705_1_NA_NA_Unknown_Murine_coronavirus GTTAAATCCATCCTATTCTTGGACCAGTATGGTTGTGACTATACTGGGCGTCTCGCCAAGGGTCTTGAAGACTATGGCGATTGTACTTTGGAAGAGATGAAGGAGTTGTTTCCTGTGTGGTGTGACTCCTTGGATAATGAAGTTGTTGTGGCCTGGCATGTTGATCGGGATCCTCGGGCTGTTATGCGCTTGCAGACTCTTGCTACTATACGTAGCATTGGTTATGTGGGCCAACCGACCGAGGATTTGGTTGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTCCTAGCAGCCAATGCCATCGTCAAAAGGCTCCCCCGCCTGGTGGAGACTATGCTGTATACGGACTCTTCCGTTACAGAATTTTGTTATAAAACTAAGTTGTGTGATTGTGGTTTTATCACGCAGTTTGGTTATGTGGATTGCTGTGGTGATGCCTGCGATTTTCGTGGGTGGGTTCCTGGCAATATGATGGATGGCTTTCTTTGCCCCGGATGTAGTAAGAGCTATATGCCCTGGGAATTGGAGGCTCAATCATCTGGTGTGATTCCAAAAGGTGGTGTTCTATTTACTCAGAGCACTGACACGGTGAATCGTGAGTCATTTAAGCTCTACGGTCATGCCGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCCTACCCAGGTATGTGGCTTCCAGTTATTTGGTCTTCTGTTAAGTCATATGCTGATTTGACTTACACAGGCGTTGTTGGTTGTAAGGCAATTGTTCAGGAGACAGATGCTATTTGCCGGTCCCTATATATGGACTACGTTCAGCACAAGTGTGGCAATCTCGAGCAGAGAGCTATTCTTGGGTTGGATGATGTCTACCATAGACAATTGCTTGTAAATAGAGGTGACTATAGTCTCCTCCTTGAAAATGTAGATCTTTTTGTTAAGCGGCGCGCTGAATTTGCTTGTAAATTCGCCACCTGTGGAGATGGTCTTGTACCTCTGCTACTAGATGGTTTGGTGCCCCGCAGTTATTATTTGATTAAGAGTGGCCAAGCCTTCACCTCGATGATGGTTAATTTTAGCCATGAGGTGACTGACATGTGTATGGACATGGCATTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTAGCCGTGCGCTTTAAGGCGTTAGGTGTAGCCGTTGTCAGGAAAATTACTGAATGGTTTGATCTTGCCGTGGACACTGCTGCCAGTGCTGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCTAATGGTGGCATAACCTTCTTAAGCGATGTTCCTGAGCTGGTCAAGAATTTTGTTGACAAGTTCAAGGTATTCTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTGTCCTTTCTGGACTTACTGTTGTCAAGACTGCCTCTAATAGGGTTTGTCTTGCTGGCTGTAAGGTTTATGAAGTTGTGCAGAAGCGTTTGTCTGCATATGTTATGCCTGTGGGTTGCAACGAGGCCACTTGTTTAGTGGGTGAGATTGAACCTGCAGTTGTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAACATATCAAGGCTGTTGTAAGCCACCTACTTCTTTTGAGAAGATTTGTGTTGTGGATAAATTGTATATGGCCAAGTGTGGTGATCAATTTTACCCTGTGGTTGTTGATAATGACACTATTGGCGTGTTAGATCAGTGTTGGAGGTTTCCCTGCGCA >MHV_A59_ORF1ab_YP_009915689_1_NA_NA_Unknown_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTTGAGGACTATGGCGATCTCACCTTGAGTGAGATGAAGGAGTTGTTCCCTGTGTGGCGTGACTCCTTGGATAGTGAAGTCCTTGTGGCTTGGCACGTTGATCGAGATCCTCGGGCTGCTATGCGTCTGCAGACTCTTGCTACTGTACGTTGCATTGATTATGTGGGCCAACCGACCGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTTCTCGCAGCCAATGCCATTGTTAAAAGACTCCCCCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTCTGTTATAAAACCAAGCTGTGTGAATGCGGTTTTATCACGCAGTTTGGCTATGTGGATTGTTGTGGTGACACCTGCGATTTTCGTGGGTGGGTTGCCGGCAATATGATGGATGGCTTTCCATGTCCAGGGTGTACCAAAAATTATATGCCCTGGGAATTGGAGGCCCAGTCATCAGGTGTTATACCAGAAGGAGGTGTTCTATTCACTCAGAGCACTGATACAGTGAATCGTGAGTCCTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCTTGCCCAGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTAGTTGGTTGTAAGGCAATTGTTCAAGAGACAGACGCTATATGTCGTTCTCTGTATATGGATTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGAGCTATCCTTGGATTGGACGATGTCTATCATAGACAGTTGCTTGTGAATAGGGGTGACTATAGTCTCCTCCTTGAGAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGTCTTGTACCCCTCCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTGATTAAGAGTGGTCAAGCTTTCACCTCTATGATGGTTAATTTTAGCCATGAGGTGACTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTGGCCGTGCGCTTTAAAGCGTTGGGTGTAGCCGTTGTCAGAAAAATTACTGAATGGTTTGATTTAGCCGTGGACATTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTGTGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTTTGTCTGCATATGTTATGCCTGTGGGTTGCAGTGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTTTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTGGATAAATTGTATATGGCCAAGTGTGGTGATCAATTTTACCCTGTGGTTGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTTCCCTGTGCG >MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp2_VIPR_ALG4_530291001_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTTGAGGACTATGGCGATCTCACCTTGAGTGAGATGAAGGAGTTGTTCCCTGTGTGGCGTGACTCCTTGGATAGTGAAGTCCTTGTGGCTTGGCACGTTGATCGAGATCCTCGGGCTGCTATGCGTCTGCAGACTCTTGCTACTGTACGTTGCATTGATTATGTGGGCCAACCGACCGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTTCTCGCAGCCAATGCCATTGTTAAAAGACTCCCCCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTCTGTTATAAAACCAAGCTGTGTGAATGCGGTTTTATCACGCAGTTTGGCTATGTGGATTGTTGTGGTGACACCTGCGATTTTCGTGGGTGGGTTGCCGGCAATATGATGGATGGCTTTCCATGTCCAGGGTGTACCAAAAATTATATGCCCTGGGAATTGGAGGCCCAGTCATCAGGTGTTATACCAGAAGGAGGTGTTCTATTCACTCAGAGCACTGATACAGTGAATCGTGAGTCCTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCTTGCCCAGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTAGTTGGTTGTAAGGCAATTGTTCAAGAGACAGACGCTATATGTCGTTCTCTGTATATGGATTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGAGCTATCCTTGGATTGGACGATGTCTATCATAGACAGTTGCTTGTGAATAGGGGTGACTATAGTCTCCTCCTTGAGAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGTCTTGTACCCCTCCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTGATTAAGAGTGGTCAAGCTTTCACCTCTATGATGGTTAATTTTAGCCATGAGGTGACTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTGGCCGTGCGCTTTAAAGCGTTGGGTGTAGCCGTTGTCAGAAAAATTACTGAATGGTTTGATTTAGCCGTGGACATTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTGTGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTTTGTCTGCATATGTTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTTTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTGGATAAATTGTATATGGCCAAGTGTGGTGATCAATTTTACCCTGTGGTTGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTTCCCTGTGCG >MHV_BHKR_lab_USA_icA59_L94P_2012_nsp2_VIPR_ALG4_530291013_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTTGAGGACTATGGCGATCTCACCTTGAGTGAGATGAAGGAGTTGTTCCCTGTGTGGCGTGACTCCTTGGATAGTGAAGTCCTTGTGGCTTGGCACGTTGATCGAGATCCTCGGGCTGCTATGCGTCTGCAGACTCTTGCTACTGTACGTTGCATTGATTATGTGGGCCAACCGACCGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTTCTCGCAGCCAATGCCATTGTTAAAAGACTCCCCCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTCTGTTATAAAACCAAGCTGTGTGAATGCGGTTTTATCACGCAGTTTGGCTATGTGGATTGTTGTGGTGACACCTGCGATTTTCGTGGGTGGGTTGCCGGCAATATGATGGATGGCTTTCCATGTCCAGGGTGTACCAAAAATTATATGCCCTGGGAATTGGAGGCCCAGTCATCAGGTGTTATACCAGAAGGAGGTGTTCTATTCACTCAGAGCACTGATACAGTGAATCGTGAGTCCTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCTTGCCCAGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTAGTTGGTTGTAAGGCAATTGTTCAAGAGACAGACGCTATATGTCGTTCTCTGTATATGGATTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGAGCTATCCTTGGATTGGACGATGTCTATCATAGACAGTTGCTTGTGAATAGGGGTGACTATAGTCTCCTCCTTGAGAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGTCTTGTACCCCTCCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTGATTAAGAGTGGTCAAGCTTTCACCTCTATGATGGTTAATTTTAGCCATGAGGTGACTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTGGCCGTGCGCTTTAAAGCGTTGGGTGTAGCCGTTGTCAGAAAAATTACTGAATGGTTTGATTTAGCCGTGGACATTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTGTGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTTTGTCTGCATATGTTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTTTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTGGATAAATTGTATATGGCCAAGTGTGGTGATCAATTTTACCCTGTGGTTGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTTCCCTGTGCG >MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp2_VIPR_ALG4_530291025_926_2680_1_2012_10_25_USA_Mouse_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTTGAGGACTATGGCGATCTCACCTTGAGTGAGATGAAGGAGTTGTTCCCTGTGTGGCGTGACTCCTTGGATAGTGAAGTCCTTGTGGCTTGGCACGTTGATCGAGATCCTCGGGCTGCTATGCGTCTGCAGACTCTTGCTACTGTACGTTGCATTGATTATGTGGGCCAACCGACCGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTTCTCGCAGCCAATGCCATTGTTAAAAGACTCCCCCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTTTGTTATAAAACCAAGCTGTGTGAATGCGGTTTTATCACGCAGTTTGGCTATGTGGATTGTTGTGGTGACACCTGCGATTTTCGTGGGTGGGTTGCCGGCAATATGATGGATGGCTTTCCATGTCCAGGGTGTACCAAAAATTATATGCCCTGGGAATTGGAGGCCCAGTCATCAGGTGTTATACCAGAAGGAGGTGTTCTATTCACTCAGAGCACTGATACAGTGAATCGTGAGTCCTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCTTGCCCAGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTAGTTGGTTGTAAGGCAATTGTTCAAGAGACAGACGCTATATGTCGTTCTCTGTATATGGATTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGAGCTATCCTTGGATTGGACGATGTCTATCATAGACAGTTGCTTGTGAATAGGGGTGACTATAGTCTCCTCCTTGAGAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGTCTTGTACCCCTCCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTGATTAAGAGTGGTCAAGCTTTCACCTCTATGATGGTTAATTTTAGCCATGAGGTGACTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTGGCCGTGCGCTTTAAAGCGTTGGGTGTAGCCGTTGTCAGAAAAATTACTGAATGGTTTGATTTAGCCGTGGACATTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTGTGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTTTGTCTGCATATGTTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTTTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTGGATAAATTGTATATGGCCAAGTGTGGTGATCAATTTTACCCTGTGGTTGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTTCCCTGTGCG >MHV_BHKR_lab_USA_infA59_H126A_2012_nsp2_VIPR_ALG4_530290989_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTTGAGGACTATGGCGATCTCACCTTGAGTGAGATGAAGGAGTTGTTCCCTGTGTGGCGTGACTCCTTGGATAGTGAAGTCCTTGTGGCTTGGCACGTTGATCGAGATCCTCGGGCTGCTATGCGTCTGCAGACTCTTGCTACTGTACGTTGCATTGATTATGTGGGCCAACCGACCGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTTCTCGCAGCCAATGCCATTGTTAAAAGACTCCCCCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTCTGTTATAAAACCAAGCTGTGTGAATGCGGTTTTATCACGCAGTTTGGCTATGTGGATTGTTGTGGTGACACCTGCGATTTTCGTGGGTGGGTTGCCGGCAATATGATGGATGGCTTTCCATGTCCAGGGTGTACCAAAAATTATATGCCCTGGGAATTGGAGGCCCAGTCATCAGGTGTTATACCAGAAGGAGGTGTTCTATTCACTCAGAGCACTGATACAGTGAATCGTGAGTCCTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCTTGCCCAGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTAGTTGGTTGTAAGGCAATTGTTCAAGAGACAGACGCTATATGTCGTTCTCTGTATATGGATTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGAGCTATCCTTGGATTGGACGATGTCTATCATAGACAGTTGCTTGTGAATAGGGGTGACTATAGTCTCCTCCTTGAGAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGTCTTGTACCCCTCCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTGATTAAGAGTGGTCAAGCTTTCACCTCTATGATGGTTAATTTTAGCCATGAGGTGACTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTGGCCGTGCGCTTTAAAGCGTTGGGTGTAGCCGTTGTCAGAAAAATTACTGAATGGTTTGATTTAGCCGTGGACATTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTGTGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTTTGTCTGCATATGTTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTTTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTGGATAAATTGTATATGGCCAAGTGTGGTGATCAATTTTACCCTGTGGTTGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTTCCCTGTGCG >MHV_JHM_IA_nsp2_VIPR_ALG4_225403289_931_2685_1_NA_USA_Mouse_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTCGAAGACTATGGCGACCTTACTTTGAGTGAGATGAAGGAGTTGTCCCCTGTGTGGCGTGACTCCTTAGATAATGAAGTTGTTGTGGCTTGGCATGTTGATCGTGACCCTCGAGCTGTGATGCGCCTGCAGACTCTGGCTACTGTACGTAGCATTGAGTATGTGGGCCAACCGATCGAGGATATGGTTGATGGGGATGTGGTGATGCGTGAACCCGCTCACCTCCTCGCGCCCAATGCCATTGTTAAAAGGCTTCCCCGTCTGGTGGAGACTATGCTGTATACGGATTCTTCCGTTACAGAGTTTTGTTATAAAACTAAGTTGTGTGATTGTGGTTTTATCACACAGTTTGGCTATGTTGATTGCTGTGGTGACACCTGTGGTTTTCGTGGGTGGGTTCCTGGCAATATGATGGATGGCTTTCCATGCCCTGGGTGTTGTAAAAGTTACATGCCTTGGGAGTTGGAAGCTCAATCATCGGGTGTTATACCAGAAGGAGGTGTTCTATTTACGCAGAGCACTGACACAGTGAATCGTGAGTCTTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTGGTGCTGCGTATTGGAGTCCATATCCTGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATATTCCTATTTGACTTATACAGGAGTTGTTGGTTGTAAGGCAATTGTCCAGGAGACAGACGCTATATGTCGTTCTCTGTACATGGACTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGGGCTATCCTTGGAGTGGACGATGTCTATCATAGACAGTTGCTTGTTAACAGGGGTGACTATAGTCTCCTCCTTGAAAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGCCTTGTACCCCTTCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTAATTAAGAGTGGTCAAGCTTTTACCTCATTGATGGTTAACTTTAGCCGAGAGGTAGTTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTAGCAGTGCGCTTTAAAGCGTTAGGCATTGCTGTTGTCAGAAAAATTACTGAATGGTTTGACTTAGCCGTGGACACTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGACATTTTTCAAGGTCTTGATCGACTCTATGTCGGTCTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTATGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTCTGCCTGCATATATTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTCTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCGTTAACATATCAAGGCTGTTGTAAGCCACCCTCTTCTTTCGAGAAGATTTGTATTGTGGATAAATTATATATGGCCAAGTGTGGTGATCAATTCTACCCTGTGGTGGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTCCCCTGCGCG >MHV_S_3239_17_nsp2_VIPR_ALG4_380706996_952_2706_1_NA_NA_Unknown_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTTGAAGACTATGGCGACCTTACTTTGAGTGAGATGAAGGAGTTGTTCCCTGTGTGGCGTGACTCCTTAGATAATGAAGTTGTTGTGGCTTGGCATGTTGATCGTGATCCTCGGGCTGTTATGCGTCTGCAGACTCTTGCTACTGTACGTAGCATTGATTATGTGGGCCAACCGACCGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTTCTTGCAGCCAATGCCATTGTTAAAAGACTCCCCCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTTTGTTATAAAACCAAGCTGTGTGAATGTGGTTTTATCACGCAGTTTGGCTATGTGGATTGTTGTGGCGACACCTGCGATTTTCGTGGGTGGGTTGCCGGCAATATGATGGATGGCTTTCCATGTCCAGGGTGTACCAAGAATTATATGCCCTGGGAATTGGAGGCCCAGTCATCAGGTGTTATACCAGAAGGAGGTGTTCTATTCACTCAGAGCACTGACACAGTGAATCGTGAGTCCTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCTTGCCCAGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTTGTTGGTTGTAAGGCAATTGTCCAAGAGACAGAGGCTATATGCCGTTCTCTGTATATGGATTATGTCCAGCACAAGTGCGGCAATCTCGAGCAGAGAGCCATCCTTGGACTGGACGATGTCTATCATAGACAGTTGCTTGTGAACAGGGGTGACTATAGTCTCCTCCTTGAAAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGCGGAGATGGTCTTGTACCCCTCCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTAATTAAGAGTGGTCAAGCTTTTACCTCAGTGATGGTTAATTTTAGCCGAGAGGTAATTGACATGTGTATGGACATGGCATTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTAGCCGTGCGCTTTAAGGCGTTAGGTGTAGCCGTTGTCAGGAAAATTACTGAATGGTTTGATCTTGCCGTGGATATTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAAGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTCACTATCTTGTCTGGACTTACCGTTGTCAAGACTGCCTCAAACAGGGTATGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTTTGTCTGCATATGTTTTGCCTGTGGGTTGCAGTGAGGCCACTTGTTTAGTGGGCGAAAGTGAACCTGCAGTTTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAATATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTGGATAAATTATATATGGCCAAGTGCGGTGATCAATTCTACCCTGTGGTTGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTCCCCTGCGCG >MHV_MI_nsp2_VIPR_ALG4_293330423_910_2664_1_1994_Australia_Mouse_Murine_coronavirus GTTAAACCCGTCCTATTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTTGAAGACTATGGCGACCTTACTTTGAGTGAGATGAAGGAGTTGTTCCCTGTGTGGTGTGACTCCTTAGATAAGGAAGTTGTTGTGGCTTGGCATGTTGATCGTGACCCTCGGGCTGTTATGCGTCTGCAGACTCTTGCTACTGTACGTAGCATTGATTATGTGGGCCAACCGACCGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTTCTAGCAGCCAATGCCATTGTTAAAAGACTCCCTCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTTTGTTATAAAACCAAGTTGTGTAATTGTGGTTTTATTACACAGTTTGGCTATGTTGATTGCTGTGGAGACACCTGCGATTTTCGTGGGTGGGTCCCCGGCAATATGATGGATGGCTTCCCTTGCCCTGGCTGTAGCAAAAACTATATGCCATGGGAATTAGAGGCTCAGTCATCTGGTGTGATCCCAGAAGGTGCAGTTCTCTTTACAGTGAGCAATGACACTGTGAACCGTGAGTCCTTTAAGATTTACGGTCATGCTGTCGTACCTTTTGGTGGTTGTGTGTATTGGAGTCCCTACCCAGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGCTGTTGGTTGCAAGGCAATTGTACAGGAAACAGAGGCTATATGCCGTTCTCTGTATATGGACTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGGGCTATCCTTGGATTGGACGATGTCTATCATAGACAGTTGCTTGTGAATAGGGGTGACTATAGTCTTCTCCTTGAGAATTTGGATTTGTTTATTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGCGGAGATGGTCTTGTACCGCTGCTGCTAGATGGTTTAGTGCCCCGCAGTTATTATTTAATTAAGAGTGGTCAAGCTTTTACCTCAGTGATGGTTAACTTTAGCCGAGAGGTAGTTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAATATGTTAAAAAAGTTACCGGCAAGCTGGCCGTGCGCTTTAAGGCGTTAGGTGTAGCTGTTGTCAGGAAAATTACTGAATGGTTTGACCTTGCCGTGGACACTGCTGCTAGTGCCGCCGGGTGGCTCTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGGTATAACCTTTGTACAGGATGTGCCTGAGTTGGTCAAGAATTTTGTTGACAAGTTCAAGGCATTTTTCAAGGTGTTGATCGACTCTATGTCGGTTTCCATCTTGTCTGGACTTACTGTTGTCAAGGCTGCCTCAAATAGGGTATGTCTTGCTGGCAGTAAGGTTTATGCAGTTGTGCAGAAATCTTTGTCTGCATATGTTATGCCTGTGGGATGTAGTGAGGCCACTTGTCTAGTGGGCGAAACTGGACCTGCAGTTTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTGGATAAGTTATATATGGCCAAGTGTGGTGATCAATTCTACCCGGTGGTGGTTGATAACGATACTGTTGGCGTTCTAGATCAGTGTTGGAGATTCCCCTGCGCA >ML_10_nsp2_VIPR_ALG4_7769352_942_2696_1_NA_NA_Unknown_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTTGAGGACTATGGCGATCTCACCTTGAGTGAGATGAAGGAGTTGTTCCCTGTGTGGCGTGACTCCTTGGATAGTGAAGTCCTTGTGGCTTGGCACGTTGATCGAGATCCTCGGGCTGCTATGCGTCTGCAGACTCTTGCTACTGTACGTTGCATTGATTATGTGGGCCAACCGACCGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTTCTCGCAGCCAATGCCATTGTTAAAAGACTCCCCCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTCTGTTATAAAACCAAGCTGTGTGAATGCGGTTTTATCACGCAGTTTGGCTATGTGGATTGTTGTGGTGACACCTGCGATTTTCGTGGGTGGGTTGCCGGCAATATGATGGATGGCTTTCCATGTCCAGGGTGTACCAAAAATTATATGCCCTGGGAATTGGAGGCCCAGTCATCAGGTGTTATACCAGAAGGAGGTGTTCTATTCACTCAGAGCACTGATACAGTGAATCGTGAGTCCTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCTTGCCCAGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTAGTTGGTTGTAAGGCAATTGTTCAAGAGACAGACGCTATATGTCGTTCTCTGTATATGGATTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGAGCTATCCTTGGATTGGACGATGTCTATCATAGACAGTTGCTTGTGAATAGGGGTGACTATAGTCTCCTCCTTGAGAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGTCTTGTACCCCTCCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTGATTAAGAGTGGTCAAGCTTTCACCTCTATGATGGTTAATTTTAGCCATGAGGTGACTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTGGCCGTGCGCTTTAAAGCGTGGGGTGTAGCCGTTGTCAGAAAAATTACTGAATGGTTTGATTTAGCCGTGGACATTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTGTGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTTTGTCTGCATATGTTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTTTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTGGATAAATTGTATATGGCCAAGTGTGGTGATCAATTTTACCCTGTGGTTGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTTCCCTGTGCG >ML_11_nsp2_VIPR_ALG4_7739594_951_2705_1_NA_NA_Unknown_Murine_coronavirus GTTAAATCCATCCTATTCTTGGACCAGTATGGTTGTGACTATACTGGGCGTCTCGCCAAGGGTCTTGAAGACTATGGCGATTGTACTTTGGAAGAGATGAAGGAGTTGTTTCCTGTGTGGTGTGACTCCTTGGATAATGAAGTTGTTGTGGCCTGGCATGTTGATCGGGATCCTCGGGCTGTTATGCGCTTGCAGACTCTTGCTACTATACGTAGCATTGGTTATGTGGGCCAACCGACCGAGGATTTGGTTGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTCCTAGCAGCCAATGCCATCGTCAAAAGGCTCCCCCGCCTGGTGGAGACTATGCTGTATACGGACTCTTCCGTTACAGAATTTTGTTATAAAACTAAGTTGTGTGATTGTGGTTTTATCACGCAGTTTGGTTATGTGGATTGCTGTGGTGATGCCTGCGATTTTCGTGGGTGGGTTCCTGGCAATATGATGGATGGCTTTCTTTGCCCCGGATGTAGTAAGAGCTATATGCCCTGGGAATTGGAGGCTCAATCATCTGGTGTGATTCCAAAAGGTGGTGTTCTATTTACTCAGAGCACTGACACGGTGAATCGTGAGTCATTTAAGCTCTACGGTCATGCCGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCCTACCCAGGTATGTGGCTTCCAGTTATTTGGTCTTCTGTTAAGTCATATGCTGATTTGACTTACACAGGCGTTGTTGGTTGTAAGGCAATTGTTCAGGAGACAGATGCTATTTGCCGGTCCCTATATATGGACTACGTTCAGCACAAGTGTGGCAATCTCGAGCAGAGAGCTATTCTTGGGTTGGATGATGTCTACCATAGACAATTGCTTGTAAATAGAGGTGACTATAGTCTCCTCCTTGAAAATGTAGATCTTTTTGTTAAGCGGCGCGCTGAATTTGCTTGTAAATTCGCCACCTGTGGAGATGGTCTTGTACCTCTGCTACTAGATGGTTTGGTGCCCCGCAGTTATTATTTGATTAAGAGTGGCCAAGCCTTCACCTCGATGATGGTTAATTTTAGCCATGAGGTGACTGACATGTGTATGGACATGGCATTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTAGCCGTGCGCTTTAAGGCGTTAGGTGTAGCCGTTGTCAGGAAAATTACTGAATGGTTTGATCTTGCCGTGGACACTGCTGCCAGTGCTGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCTAATGGTGGCATAACCTTCTTAAGCGATGTTCCTGAGCTGGTCAAGAATTTTGTTGACAAGTTCAAGGTATTCTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTGTCCTTTCTGGACTTACTGTTGTCAAGACTGCCTCTAATAGGGTTTGTCTTGCTGGCTGTAAGGTTTATGAAGTTGTGCAGAAGCGTTTGTCTGCATATGTTATGCCTGTGGGTTGCAACGAGGCCACTTGTTTAGTGGGTGAGATTGAACCTGCAGTTGTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAACATATCAAGGCTGTTGTAAGCCACCTACTTCTTTTGAGAAGATTTGTGTTGTGGATAAATTGTATATGGCCAAGTGTGGTGATCAATTTTACCCTGTGGTTGTTGATAATGACACTATTGGCGTGTTAGATCAGTGTTGGAGGTTTCCCTGCGCA >Parker_ORF1ab_YP_009924369_1_NA_NA_Rat_Murine_coronavirus GTTAAACCCATCCTTTTTGTGGACCAGTATGGTTGTGACTATACTGGATGTCTCGCCAAGGGTCTTGAGGACTATGGTGACCTTACTTTGAGTGAGATGAAGGAGTTATTCCCTGTGTGGCGTGAATCCTTAGATAATGAAGTAGTTGTGGCCTGGCATGTTGATCGTGACCCGCGGGCTGTTATGCGTCTGCAGACTCTTGCTACTCTACGTAGCATTGATTATGTGGGCCAACCGACAGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTTCTAGCAGCTGATGCCCTTGTTAAAAGACTCCCCCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTTTGTTATAAAACCAAGCTGTGTGATTGTGGTTTTATCACGCAGTTTGGCTATGTGGATTGCTGTGGTGACACCTGCGATTTTCGCGGATGGGTACCGGGCAATATGCTGGATGGTTTTCCTTGCCCAGGGTGTAGCAAAAGTTACATGCCATGGGAACTGGAAGCTCAATCATCAGGTGTAATCCCAGAAGGAGGTGTTCTGTTTACTCAGAGCACTGATACGGTGAATCGTGAGGCTTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCTTACCCAGGTATGTGGCTTCCAGTAGTTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTTGTTGGTTGTAAGGCAATTGTTCAGGAGACAGATGCTATATGCCGGTCTCTATATATGGACTACGTTCAGCACAAGTGTGGCAATCTCGATCAGAGAGCTACTCTTGGATTGGACGATGTCTATCATAGACAATTGCTTGTAAATAGAGGTGACTATAGTCTCCTACTTGAAAATGTAGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTTGCCACCTGCGGAGATGGTTTTGTACCTCTTCTGCTAGATGGTTTAGTGCCCCGCAGTTATTATTTAATTAAGAGTGGCCAGGCCTACACCTCGATGATGGTTAATTTTAGCCATGAGGTGATTGACATGTGTATGGACATGGCATTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGTTTACTGGCAAACTAGCCGTGCGCTTTAAGGCGTTAGGTGTAGCCGTTGTCAGGAAAATTACTGAATGGTTTGATCTTGCCGTGGACATTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTCGCAGTGGCCAATGGTGTCATAACATTTGTTCAGGAGGCTCCTGAGCTAGTCAAGAATTTTGTTGCCAAGTTCAGGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAACAGGGTATGTCTGGCTGGCAGTAAGGTTTATGAGGTTGTGCAGAAGTCTTTGTCTGCATATGTTTTGCCTGTTGGTTGCAGTGAGGCCACTTGTTTAGTGGGCGAAAGTGAACCTGCAGTTTTTGAAGATGATGTTGTTGGTGTGGTTAAGACCCCATTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTAGATAAATTATATATGGCCAAGTGTGGTGATCAATTCTACCCCGTGGTTGTTGATAACGACACTGTCGGCGTGTTAGATCAGTGCTGGAGATTCCCCTGTGCG >Penn_97_1_nsp2_VIPR_ALG4_7769341_951_2705_1_NA_NA_Unknown_Murine_coronavirus GTTAAATCCATCCTATTCTTGGACCAGTATGGTTGTGACTATACTGGGCGTCTCGCCAAGGGTCTTGAAGACTATGGCGATTGTACTTTGGAAGAGATGAAGGAGTTGTTTCCTGTGTGGTGTGACTCCTTGGATAATGAAGTTGTTGTGGCCTGGCATGTTGATCGGGATCCTCGGGCTGTTATGCGCTTGCAGACTCTTGCTACTGTACGTTGCATTGGTTATGTGGGCCAACCGACCGAGGATTTGGTTGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTCCTAGCAGCCAATGCCATCGTCAAAAGGCTCCCCCGCCTGGTGGAGACTATGCTGTATACGGACTCTTCCGTTACAGAATTTTGTTATAAAACTAAGTTGTGTGATTGTGGTTTTATCACGCAGTTTGGTTATGTGGATTGCTGTGGTGATGCCTGCGATTTTCGTGGGTGGGTTCCTGGCAATATGATGGATGGCTTTCTTTGCCCCGGATGTAGTAAGAGCTATATGCCCTGGGAATTGGAGGCTCAATCATCTGGTGTGATTCCAAAAGGTGGTGTTCTATTTACTCAGAGCACTGACACGGTGAATCGTGAGTCATTTAAGCTCTACGGTCATGCCGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCCTACCCAGGTATGTGGCTTCCAGTTATTTGGTCTTCTGTTAAGTCATATGCTGATTTGACTTACACAGGCGTTGTTGGTTGTAAGGCAATTGTTCAGGAGACAGATGCTATTTGCCGGTCCCTATATATGGACTACGTTCAGCACAAGTGTGGCAATCTCGAGCAGAGAGCTATTCTTGGGTTGGATGATGTCTACCATAGACAATTGCTTGTAAATAGAGGTGACTATAGTCTCCTCCTTGAAAATGTAGATCTTTTTGTTAAGCGGCGCGCTGAATTTGCTTGTAAATTCGCCACCTGTGGAGATGGTCTTGTACCTCTGCTACTAGATGGTTTGGTGCCCCGCAGTTATTATTTGATTAAGAGTGGCCAAGCCTTCACCTCGATGATGGTTAATTTTAGCCATGAGGTGACTGACATGTGTATGGACATGGCATTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTAGCCGTGCGCTTTAAGGCGTTAGGTGTAGCCGTTGTCAGGAAAATTACTGAATGGTTTGATCTTGCCGTGGACACTGCTGCCAGTGCTGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCTAATGGTGGCATAACCTTCTTAAGCGATGTTCCTGAGCTGGTCAAGAATTTTGTTGACAAGTTCAAGGTATTCTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTGTCCTTTCTGGACTTACTGTTGTCAAGACTGCCTCTAATAGGGTTTGTCTTGCTGGCTGTAAGGTTTATGAAGTTGTGCAGAAGCGTTTGTCTGCATATGTTATGCCTGTGGGTTGCAACGAGGCCACTTGTTTAGTGGGTGAGATTGAACCTGCAGTTGTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAACATATCAAGGCTGTTGTAAGCCACCTACTTCTTTTGAGAAGATTTGTGTTGTGGATAAATTGTATATGGCCAAGTGTGGTGATCAATTTTACCCTGTGGTTGTTGATAATGACACTATTGGCGTGTTAGATCAGTGTTGGAGGTTTCCCTGCGCA >RA59_R13_nsp2_VIPR_ALG4_225403197_928_2682_1_2006_01_01_USA_Mouse_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTTGAGGACTATGGCGATCTCACCTTGAGTGAGATGAAGGAGTTGTTCCCTGTGTGGCGTGACTCCTTGGATAGTGAAGTCCTTGTGGCTTGGCACGTTGATCGAGATCCTCGGGCTGCTATGCGTCTGCAGACTCTTGCTACTGTACGTTGCATTGATTATGTGGGCCAACCGACCGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTTCTCGCAGCCAATGCCATTGTTAAAAGACTCCCCCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTCTGTTATAAAACCAAGCTGTGTGAATGCGGTTTTATCACGCAGTTTGGCTATGTGGATTGTTGTGGTGACACCTGCGATTTTCGTGGGTGGGTTGCCGGCAATATGATGGATGGCTTTCCATGTCCAGGGTGTACCAAAAATTATATGCCCTGGGAATTGGAGGCCCAGTCATCAGGTGTTATACCAGAAGGAGGTGTTCTATTCACTCAGAGCACTGATACAGTGAATCGTGAGTCCTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCTTGCCCAGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTAGTTGGTTGTAAGGCAATTGTTCAAGAGACAGACGCTATATGTCGTTCTCTGTATATGGATTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGAGCTATCCTTGGATTGGACGATGTCTATCATAGACAGTTGCTTGTGAATAGGGGTGACTATAGTCTCCTCCTTGAGAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGTCTTGTACCCCTCCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTGATTAAGAGTGGTCAAGCTTTCACCTCTATGATGGTTAATTTTAGCCATGAGGTGACTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTGGCCGTGCGCTTTAAAGCGTTGGGTGTAGCCGTTGTCAGAAAAATTACTGAATGGTTTGATTTAGCCGTGGACATTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTGTGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCCTTGTCTGCATATGTTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTTTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTGGATAAATTGTATATGGCCAAGTGTGGTGATCAATTTTACCCTGTGGTTGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTTCCCTGTGCG >RA59_SJHM_nsp2_VIPR_ALG4_225403223_912_2666_1_NA_USA_Mouse_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTTGAGGACTATGGCGATCTCACCTTGAGTGAGATGAAGGAGTTGTTCCCTGTGTGGCGTGACTCCTTGGATAGTGAAGTCCTTGTGGCTTGGCACGTTGATCGAGATCCTCGGGCTGCTATGCGTCTGCAGACTCTTGCTACTGTACGTTGCATTGATTATGTGGGCCAACCGACCGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTTCTCGCAGCCAATGCCATTGTTAAAAGACTCCCCCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTCTGTTATAAAACCAAGCTGTGTGAATGCGGTTTTATCACGCAGTTTGGCTATGTGGATTGTTGTGGTGACACCTGCGATTTTCGTGGGTGGGTTGCCGGCAATATGATGGATGGCTTTCCATGTCCAGGGTGTACCAAAAATTATATGCCCTGGGAATTGGAGGCCCAGTCATCAGGTGTTATACCAGAAGGAGGTGTTCTATTCACTCAGAGCACTGATACAGTGAATCGTGAGTCCTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCTTGCCCAGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTAGTTGGTTGTAAGGCAATTGTTCAAGAGACAGACGCTATATGTCGTTCTCTGTATATGGATTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGAGCTATCCTTGGATTGGACGATGTCTATCATAGACAGTTGCTTGTGAATAGGGGTGACTATAGTCTCCTCCTTGAGAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGTCTTGTACCCCTCCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTGATTAAGAGTGGTCAAGCTTTCACCTCTATGATGGTTAATTTTAGCCATGAGGTGACTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTGGCCGTGCGCTTTAAAGCGTTGGGTGTAGCCGTTGTCAGAAAAATTACTGAATGGTTTGATTTAGCCGTGGACATTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTGTGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCCTTGTCTGCATATGTTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTTTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTGGATAAATTGTATATGGCCAAGTGTGGTGATCAATTTTACCCTGTGGTTGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTTCCCTGTGCG >S_nsp2_VIPR_ALG4_298199703_952_2706_1_NA_USA_Mouse_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTTGAAGACTATGGCGACCTTACTTTGAGTGAGATGAAGGAGTTGTTCCCTGTGTGGCGTGACTCCTTAGATAATGAAGTTGTTGTGGCTTGGCATGTTGATCGTGATCCTCGGGCTGTTATGCGTCTGCAGACTCTTGCTACTGTACGTAGCATTGATTATGTGGGCCAACCGACCGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTTCTTGCAGCCAATGCCATTGTTAAAAGACTCCCCCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTTTGTTATAAAACCAAGCTGTGTGAATGTGGTTTTATCACGCAGTTTGGCTATGTGGATTGTTGTGGCGACACCTGCGATTTTCGTGGGTGGGTTGCCGGCAATATGATGGATGGCTTTCCATGTCCAGGGTGTACCAAGAATTATATGCCCTGGGAATTGGAGGCCCAGTCATCAGGTGTTATACCAGAAGGAGGTGTTCTATTCACTCAGAGCACTGACACAGTGAATCGTGAGTCCTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCTTGCCCAGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTTGTTGGTTGTAAGGCAATTGTCCAAGAGACAGAGGCTATATGCCGTTCTCTGTATATGGATTATGTCCAGCACAAGTGCGGCAATCTCGAGCAGAGAGCCATCCTTGGACTGGACGATGTCTATCATAGACAGTTGCTTGTGAACAGGGGTGACTATAGTCTCCTCCTTGAAAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGCGGAGATGGTCTTGTACCCCTCCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTAATTAAGAGTGGTCAAGCTTTTACCTCAGTGATGGTTAATTTTAGCCGAGAGGTAATTGACATGTGTATGGACATGGCATTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTAGCCGTGCGCTTTAAGGCGTTAGGTGTAGCCGTTGTCAGGAAAATTACTGAATGGTTTGATCTTGCCGTGGATATTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAAGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTCACTATCTTGTCTGGACTTACCGTTGTCAAGACTGCCTCAAACAGGGTATGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTTTGTCTGCATATGTTTTGCCTGTGGGTTGCAGTGAGGCCACTTGTTTAGTGGGCGAAAGTGAACCTGCAGTTTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAATATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTGGATAAATTATATATGGCCAAGTGCGGTGATCAATTCTACCCTGTGGTTGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTCCCCTGCGCG >RJHM_A_nsp2_VIPR_ALG4_225403216_909_2663_1_NA_USA_Mouse_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTCGAAGACTATGGCGACCTTACTTTGAGTGAGATGAAGGAGTTGTCCCCTGTGTGGCGTGACTCCTTAGATAATGAAGTTGTTGTGGCTTGGCATGTTGATCGTGACCCTCGAGCTGTGATGCGCCTGCAGACTCTGGCTACTGTACGTAGCATTGAGTATGTGGGCCAACCGATCGAGGATATGGTTGATGGGGATGTGGTGATGCGTGAACCCGCTCACCTCCTCGCGCCCAATGCCATTGTTAAAAGGCTTCCCCGTCTGGTGGAGACTATGCTGTATACGGATTCTTCCGTTACAGAGTTTTGTTATAAAACTAAGTTGTGTGATTGTGGTTTTATCACACAGTTTGGCTATGTTGATTGCTGTGGTGACACCTGTGGTTTTCGTGGGTGGGTTCCTGGCAATATGATGGATGGCTTTCCATGCCCTGGGTGTTGTAAAAGTTACATGCCTTGGGAGTTGGAAGCTCAATCATCGGGTGTTATACCAGAAGGAGGTGTTCTATTTACGCAGAGCACTGACACAGTGAATCGTGAGTCTTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTGGTGCTGCGTATTGGAGTCCATATCCTGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATATTCCTATTTGACTTATACAGGAGTTGTTGGTTGTAAGGCAATTGTCCAGGAGACAGACGCTATATGTCGTTCTCTGTACATGGACTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGGGCTATCCTTGGAGTGGACGATGTCTATCATAGACAGTTGCTTGTTAACAGGGGTGACTATAGTCTCCTCCTTGAAAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGCCTTGCACCCCTTCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTAATTAAGAGTGGTCAAGCTTTTACCTCATTGATGGTTAACTTTAGCCGAGAGGTAGTTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTAGCAGTGCGCTTTAAAGCGTTAGGCATTGCTGTTGTCAGAAAAATTACTGAATGGTTTGACTTAGCCGTGGACACTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGACATTTTTCAAGGTCTTGATCGACTCTATGTCGGTCTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTATGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTCTGCCTGCATATATTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTCTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCGTTAACATATCAAGGCTGTTGTAAGCCACCCTCTTCTTTCGAGAAGATTTGTATTGTGGATAAATTATATATGGCCAAGTGTGGTGATCAATTCTACCCTGTGGTGGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTCCCCTGCGCG >SA59_RJHM_nsp2_VIPR_ALG4_225403245_909_2663_1_NA_USA_Mouse_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTCGAAGACTATGGCGACCTTACTTTGAGTGAGATGAAGGAGTTGTCCCCTGTGTGGCGTGACTCCTTAGATAATGAAGTTGTTGTGGCTTGGCATGTTGATCGTGACCCTCGAGCTGTGATGCGCCTGCAGACTCTGGCTACTGTACGTAGCATTGAGTATGTGGGCCAACCGATCGAGGATATGGTTGATGGGGATGTGGTGATGCGTGAACCCGCTCACCTCCTCGCGCCCAATGCCATTGTTAAAAGGCTTCCCCGTCTGGTGGAGACTATGCTGTATACGGATTCTTCCGTTACAGAGTTTTGTTATAAAACTAAGTTGTGTGATTGTGGTTTTATCACACAGTTTGGCTATGTTGATTGCTGTGGTGACACCTGTGGTTTTCGTGGGTGGGTTCCTGGCAATATGATGGATGGCTTTCCATGCCCTGGGTGTTGTAAAAGTTACATGCCTTGGGAGTTGGAAGCTCAATCATCGGGTGTTATACCAGAAGGAGGTGTTCTATTTACGCAGAGCACTGACACAGTGAATCGTGAGTCTTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTGGTGCTGCGTATTGGAGTCCATATCCTGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATATTCCTATTTGACTTATACAGGAGTTGTTGGTTGTAAGGCAATTGTCCAGGAGACAGACGCTATATGTCGTTCTCTGTACATGGACTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGGGCTATCCTTGGAGTGGACGATGTCTATCATAGACAGTTGCTTGTTAACAGGGGTGACTATAGTCTCCTCCTTGAAAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGCCTTGTACCCCTTCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTAATTAAGAGTGGTCAAGCTTTTACCTCATTGATGGTTAACTTTAGCCGAGAGGTAGTTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTAGCAGTGCGCTTTAAAGCGTTAGGCATTGCTGTTGTCAGAAAAATTACTGAATGGTTTGACTTAGCCGTGGACACTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGACATTTTTCAAGGTCTTGATCGACTCTATGTCGGTCTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTATGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTCTGCCTGCATATATTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTCTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCGTTAACATATCAAGGCTGTTGTAAGCCACCCTCTTCTTTCGAGAAGATTTGTATTGTGGATAAATTATATATGGCCAAGTGTGGTGATCAATTCTACCCTGTGGTGGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTCCCCTGCGCG >UNKNOWN_AC_000192_nsp2_VIPR_ALG4_YP_209230_1_956_2710_1_NA_NA_Unknown_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTCGAAGACTATGGCGACCTTACTTTGAGTGAGATGAAGGAGTTGTCCCCTGTGTGGCGTGACTCCTTAGATAATGAAGTTGTTGTGGCTTGGCATGTTGATCGTGACCCTCGAGCTGTGATGCGCCTGCAGACTCTGGCTACTGTACGTAGCATTGAGTATGTGGGCCAACCGATCGAGGATATGGTTGATGGGGATGTGGTGATGCGTGAACCCGCTCACCTCCTCGCGCCCAATGCCATTGTTAAAAGGCTTCCCCGTCTGGTGGAGACTATGCTGTATACGGATTCTTCCGTTACAGAGTTTTGTTATAAAACTAAGTTGTGTGATTGTGGTTTTATCACACAGTTTGGCTATGTTGATTGCTGTGGTGACACCTGTGGTTTTCGTGGGTGGGTTCCTGGCAATATGATGGATGGCTTTCCATGCCCTGGGTGTTGTAAAAGTTACATGCCTTGGGAGTTGGAAGCTCAATCATCGGGTGTTATACCAGAAGGAGGTGTTCTATTTACGCAGAGCACTGACACAGTGAATCGTGAGTCTTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTGGTGCTGCGTATTGGAGTCCATATCCTGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATATTCCTATTTGACTTATACAGGAGTTGTTGGTTGTAAGGCAATTGTCCAGGAGACAGACGCTATATGTCGTTTTCTGTACATGGACTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGGGCTATCCTTGGATTGGACGATGTCTATCATAGACAGTTGCTTGTTAACAGGGGTGACTATAGTCTCCTCCTTGAAAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGCCTTGTACCCCTTCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTAATTAAGAGTGGTCAAGCTTTTACCTCATTGATGGTTAACTTTAGCCGAGAGGTAGTTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAAGTAGCAGTGCGCTTTAAAGCGTTAGGCATTGCTGTTGTCAGAAAAATTACTGAATGGTTTGACTTAGCCGTGGACACTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTAGCCAATGGTGTTATAACCTTTATACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGACATTTTTCAAGGTCTTGATCGACTCTATGTCGGTCTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTATGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTCTGCCTGCATATATTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTCTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCGTTAACATATCAAGGCTGTTGTAAGCCACCCTCTTCTTTCGAGAAGATTTGTATTGTGGATAAATTATATATGGCCAAGTGTGGTGATCAATTCTACCCTGTGGTGGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTCCCCTGCGCG >inf_MHV_A59_nsp2_VIPR_ALG4_225403278_926_2680_1_NA_USA_Mouse_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTTGAGGACTATGGCGATCTCACCTTGAGTGAGATGAAGGAGTTGTTCCCTGTGTGGCGTGACTCCTTGGATAGTGAAGTCCTTGTGGCTTGGCACGTTGATCGAGATCCTCGGGCTGCTATGCGTCTGCAGACTCTTGCTACTGTACGTTGCATTGATTATGTGGGCCAACCGACCGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTTCTCGCAGCCAATGCCATTGTTAAAAGACTCCCCCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTCTGTTATAAAACCAAGCTGTGTGAATGCGGTTTTATCACGCAGTTTGGCTATGTGGATTGTTGTGGTGACACCTGCGATTTTCGTGGGTGGGTTGCCGGCAATATGATGGATGGCTTTCCATGTCCAGGGTGTACCAAAAATTATATGCCCTGGGAATTGGAGGCCCAGTCATCAGGTGTTATACCAGAAGGAGGTGTTCTATTCACTCAGAGCACTGATACAGTGAATCGTGAGTCCTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCTTGCCCAGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTAGTTGGTTGTAAGGCAATTGTTCAAGAGACAGACGCTATATGTCGTTCTCTGTATATGGATTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGAGCTATCCTTGGATTGGACGATGTCTATCATAGACAGTTGCTTGTGAATAGGGGTGACTATAGTCTCCTCCTTGAGAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGTCTTGTACCCCTCCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTGATTAAGAGTGGTCAAGCTTTCACCTCTATGATGGTTAATTTTAGCCATGAGGTGACTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTGGCCGTGCGCTTTAAAGCGTTGGGTGTAGCCGTTGTCAGAAAAATTACTGAATGGTTTGATTTAGCCGTGGACATTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTGTGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTTTGTCTGCATATGTTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTTTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTGGATAAATTGTATATGGCCAAGTGTGGTGATCAATTTTACCCTGTGGTTGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTTCCCTGTGCG >repA59_RJHM_nsp2_VIPR_ALG4_225403233_923_2677_1_NA_USA_Mouse_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTTGAGGACTATGGCGATCTCACCTTGAGTGAGATGAAGGAGTTGTTCCCTGTGTGGCGTGACTCCTTGGATAGTGAAGTCCTTGTGGCTTGGCACGTTGATCGAGATCCTCGGGCTGCTATGCGTCTGCAGACTCTTGCTACTGTACGTTGCATTGATTATGTGGGCCAACCGACCGAGGATGTGGTGGATGGAGATGTGGTAGTGCGTGAGCCTGCTCATCTTCTCGCAGCCAATGCCATTGTTAAAAGACTCCCCCGTTTGGTGGAGACTATGCTGTATACGGATTCGTCCGTTACAGAATTCTGTTATAAAACCAAGCTGTGTGAATGCGGTTTTATCACGCAGTTTGGCTATGTGGATTGTTGTGGTGACACCTGCGATTTTCGTGGGTGGGTTGCCGGCAATATGATGGATGGCTTTCCATGTCCAGGGTGTACCAAAAATTATATGCCCTGGGAATTGGAGGCCCAGTCATCAGGTGTTATACCAGAAGGAGGTGTTCTATTCACTCAGAGCACTGATACAGTGAATCGTGAGTCCTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTTCTGCTGTGTATTGGAGCCCTTGCCCAGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATACTCTGGTTTGACTTATACAGGAGTAGTTGGTTGTAAGGCAATTGTTCAAGAGACAGACGCTATATGTCGTTCTCTGTATATGGATTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGAGCTATCCTTGGATTGGACGATGTCTATCATAGACAGTTGCTTGTGAATAGGGGTGACTATAGTCTCCTCCTTGAGAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGTCTTGTACCCCTCCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTGATTAAGAGTGGTCAAGCTTTCACCTCTATGATGGTTAATTTTAGCCATGAGGTGACTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTGGCCGTGCGCTTTAAAGCGTTGGGTGTAGCCGTTGTCAGAAAAATTACTGAATGGTTTGATTTAGCCGTGGACATTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGGCATTTTTCAAGGTTTTGATCGACTCTATGTCGGTTTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTGTGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCCTTGTCTGCATATGTTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTTTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCATTAACATATCAAGGCTGTTGTAAGCCACCCACTTCTTTCGAGAAGATTTGTATTGTGGATAAATTGTATATGGCCAAGTGTGGTGATCAATTTTACCCTGTGGTTGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTTCCCTGTGCG >repJHM_RA59_nsp2_VIPR_ALG4_225403300_892_2646_1_NA_USA_Mouse_Murine_coronavirus GTTAAGCCCATCCTGTTTGTGGACCAGTATGGTTGCGACTATACTGGATGTCTCGCCAAGGGTCTCGAAGACTATGGCGACCTTACTTTGAGTGAGATGAAGGAGTTGTCCCCTGTGTGGCGTGACTCCTTAGATAATGAAGTTGTTGTGGCTTGGCATGTTGATCGTGACCCTCGAGCTGTGATGCGCCTGCAGACTCTGGCTACTGTACGTAGCATTGAGTATGTGGGCCAACCGATCGAGGATATGGTTGATGGGGATGTGGTGATGCGTGAACCCGCTCACCTCCTCGCGCCCAATGCCATTGTTAAAAGGCTTCCCCGTCTGGTGGAGACTATGCTGTATACGGATTCTTCCGTTACAGAGTTTTGTTATAAAACTAAGTTGTGTGATTGTGGTTTTATCACACAGTTTGGCTATGTTGATTGCTGTGGTGACACCTGTGGTTTTCGTGGGTGGGTTCCTGGCAATATGATGGATGGCTTTCCATGCCCTGGGTGTTGTAAAAGTTACATGCCTTGGGAGTTGGAAGCTCAATCATCGGGTGTTATACCAGAAGGAGGTGTTCTATTTACGCAGAGCACTGACACAGTGAATCGTGAGTCTTTTAAGCTCTACGGTCATGCTGTTGTGCCTTTTGGTGGTGCTGCGTATTGGAGTCCATATCCTGGTATGTGGCTTCCAGTAATTTGGTCTTCTGTTAAGTCATATTCCTATTTGACTTATACAGGAGTTGTTGGTTGTAAGGCAATTGTCCAGGAGACAGACGCTATATGTCGTTCTCTGTACATGGACTATGTCCAGCACAAGTGTGGCAATCTCGAGCAGAGGGCTATCCTTGGAGTGGACGATGTCTATCATAGACAGTTGCTTGTTAACAGGGGTGACTATAGTCTCCTCCTTGAAAATGTGGATTTGTTTGTTAAGCGGCGCGCTGAATTTGCTTGCAAATTCGCCACCTGTGGAGATGGCCTTGTACCCCTTCTACTAGATGGTTTAGTGCCCCGCAGTTATTATTTAATTAAGAGTGGTCAAGCTTTTACCTCATTGATGGTTAACTTTAGCCGAGAGGTAGTTGACATGTGTATGGACATGGCTTTATTGTTCATGCATGATGTTAAAGTGGCCACTAAGTATGTTAAGAAGGTTACTGGCAAACTAGCAGTGCGCTTTAAAGCGTTAGGCATTGCTGTTGTCAGAAAAATTACTGAATGGTTTGACTTAGCCGTGGACACTGCTGCTAGTGCCGCTGGATGGCTTTGCTACCAGCTGGTAAATGGCTTATTTGCAGTGGCCAATGGTGTTATAACCTTTGTACAGGAGGTGCCTGAGCTTGTCAAGAATTTTGTTGACAAGTTCAAGACATTTTTCAAGGTCTTGATCGACTCTATGTCGGTCTCTATCTTGTCTGGACTTACTGTTGTCAAGACTGCCTCAAATAGGGTATGTCTTGCTGGCAGTAAGGTTTATGAAGTTGTGCAGAAATCTCTGCCTGCATATATTATGCCTGTGGGTTGCAGCGAAGCCACTTGTTTGGTGGGTGAGATTGAACCTGCAGTCTTTGAAGATGATGTTGTTGATGTGGTTAAAGCCCCGTTAACATATCAAGGCTGTTGTAAGCCACCCTCTTCTTTCGAGAAGATTTGTATTGTGGATAAATTATATATGGCCAAGTGTGGTGATCAATTCTACCCTGTGGTGGTTGATAACGACACTGTTGGCGTGTTAGATCAGTGCTGGAGGTTCCCCTGCGCG
>681_nsp2_VIPR_ALG4_381354058_921_2675_1_NA_NA_Rat_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDNEVVVAWHVDRDPRAVMRLQTLATLRSIDYVGQPTEDVVDGDVVVREPAHLLAADAVVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCDFRGWVPGNMLDGFPCPGCSKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNREAFKLYGHAVVPFGSAVYWSPYPGMWLPVVWSSVKSYSGLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLDQRATLGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGFVPLLLDGLVPRSYYLIKSGQAYTSMMVNFSHEVIDMCMDMALLFMHDVKVATKYVKKFTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEAPELVKNFVAKFRAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKFYEVVQKSLSAYVLPVGCSEATCLVGESEPAVFEDDVVGVVKTPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >8190_nsp2_VIPR_ALG4_381354069_921_2675_1_NA_NA_Rat_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRESLDNEVVVAWHVDRDPRAVMRLQTLATLRSIDYVGQPTEDVVDGDVVVRAPAHLLAADALVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCDFRGWVPGNMLDGFPCPGCSKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNREAFKLYGHAVVPFGSAVYWSPYPGMWLPVVWSSVKSYSGLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLDQRATLGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGFVPLLLDGLVPRSYYLIKSGQAYTSMMVNFSHEVIDMCMDMALLFMHDVKVATKYVKKFTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEAPELVKNFVAKFRAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVLPVGCSEATCLVGESEPAVFEDDVVGVVKTPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >JHM_WU_nsp2_VIPR_ALG4_397136020_935_2689_1_1947_08_14_USA_Unknown_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVVAWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPNAIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGFRGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSLMVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVRKITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAYIMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >JHM_WU_Dns2_nsp2_VIPR_ALG4_397136010_931_2685_1_1947_08_14_USA_Unknown_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVVAWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPNAIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGFRGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSLMVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVRKITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAYIMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >MHV_1_nsp2_VIPR_ALG4_225403253_932_2686_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDKEVVVAWHVDRDPRAVMRLQTLATIRSIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYADSSVTEFCYKTKLGDCGFITQFGYVDCCGDACDFRGWVPGNMMDGFPCPGCSRSYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVAPFGSAVYWSPYPGMWLPVIWSSVKSYSGLTYTGVVGCKAIVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKVPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >MHV_3_nsp2_VIPR_ALG4_225403263_928_2682_1_NA_USA_Mouse_Murine_coronavirus VNPILFVDQYGCDYTGCLAKGLEDYGECTLDEMKELFPVWRDSLGSDVIVAWQVVRDPRAVMRMQTLATIRSIEYVGQPVEDLVDGDVVMREPAHLLSANAVVKRLPRLVEAMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCDFRGWVPGNMMDGFPCPGCSKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAAYWSPYPGMWLPVIWSSVKSYSGLTYTGVVGCKAIVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPLVVDNDTVGVLDQCWRFPCA >MHV_2_nsp2_VIPR_ALG4_6625760_951_2705_1_NA_NA_Unknown_Murine_coronavirus VKSILFLDQYGCDYTGRLAKGLEDYGDCTLEEMKELFPVWCDSLDNEVVVAWHVDRDPRAVMRLQTLATIRSIGYVGQPTEDLVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDACDFRGWVPGNMMDGFLCPGCSKSYMPWELEAQSSGVIPKGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPYPGMWLPVIWSSVKSYADLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFLSDVPELVKNFVDKFKVFFKVLIDSMSVSVLSGLTVVKTASNRVCLAGCKVYEVVQKRLSAYVMPVGCNEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCKPPTSFEKICVVDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCA >MHV_A59_ORF1ab_YP_009915689_1_NA_NA_Unknown_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp2_VIPR_ALG4_530291001_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >MHV_BHKR_lab_USA_icA59_L94P_2012_nsp2_VIPR_ALG4_530291013_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp2_VIPR_ALG4_530291025_926_2680_1_2012_10_25_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >MHV_BHKR_lab_USA_infA59_H126A_2012_nsp2_VIPR_ALG4_530290989_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >MHV_JHM_IA_nsp2_VIPR_ALG4_225403289_931_2685_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVVAWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPNAIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGFRGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSLMVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVRKITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAYIMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >MHV_S_3239_17_nsp2_VIPR_ALG4_380706996_952_2706_1_NA_NA_Unknown_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDNEVVVAWHVDRDPRAVMRLQTLATVRSIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKAIVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSVMVNFSREVIDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVTILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVLPVGCSEATCLVGESEPAVFEDDVVDVVKAPLIYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >MHV_MI_nsp2_VIPR_ALG4_293330423_910_2664_1_1994_Australia_Mouse_Murine_coronavirus VKPVLFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWCDSLDKEVVVAWHVDRDPRAVMRLQTLATVRSIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCNCGFITQFGYVDCCGDTCDFRGWVPGNMMDGFPCPGCSKNYMPWELEAQSSGVIPEGAVLFTVSNDTVNRESFKIYGHAVVPFGGCVYWSPYPGMWLPVIWSSVKSYSGLTYTGAVGCKAIVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENLDLFIKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSVMVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFVQDVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKAASNRVCLAGSKVYAVVQKSLSAYVMPVGCSEATCLVGETGPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >ML_10_nsp2_VIPR_ALG4_7769352_942_2696_1_NA_NA_Unknown_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKAWGVAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >ML_11_nsp2_VIPR_ALG4_7739594_951_2705_1_NA_NA_Unknown_Murine_coronavirus VKSILFLDQYGCDYTGRLAKGLEDYGDCTLEEMKELFPVWCDSLDNEVVVAWHVDRDPRAVMRLQTLATIRSIGYVGQPTEDLVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDACDFRGWVPGNMMDGFLCPGCSKSYMPWELEAQSSGVIPKGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPYPGMWLPVIWSSVKSYADLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFLSDVPELVKNFVDKFKVFFKVLIDSMSVSVLSGLTVVKTASNRVCLAGCKVYEVVQKRLSAYVMPVGCNEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCKPPTSFEKICVVDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCA >Parker_ORF1ab_YP_009924369_1_NA_NA_Rat_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRESLDNEVVVAWHVDRDPRAVMRLQTLATLRSIDYVGQPTEDVVDGDVVVREPAHLLAADALVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCDFRGWVPGNMLDGFPCPGCSKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNREAFKLYGHAVVPFGSAVYWSPYPGMWLPVVWSSVKSYSGLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLDQRATLGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGFVPLLLDGLVPRSYYLIKSGQAYTSMMVNFSHEVIDMCMDMALLFMHDVKVATKYVKKFTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEAPELVKNFVAKFRAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVLPVGCSEATCLVGESEPAVFEDDVVGVVKTPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >Penn_97_1_nsp2_VIPR_ALG4_7769341_951_2705_1_NA_NA_Unknown_Murine_coronavirus VKSILFLDQYGCDYTGRLAKGLEDYGDCTLEEMKELFPVWCDSLDNEVVVAWHVDRDPRAVMRLQTLATVRCIGYVGQPTEDLVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDACDFRGWVPGNMMDGFLCPGCSKSYMPWELEAQSSGVIPKGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPYPGMWLPVIWSSVKSYADLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFLSDVPELVKNFVDKFKVFFKVLIDSMSVSVLSGLTVVKTASNRVCLAGCKVYEVVQKRLSAYVMPVGCNEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCKPPTSFEKICVVDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCA >RA59_R13_nsp2_VIPR_ALG4_225403197_928_2682_1_2006_01_01_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >RA59_SJHM_nsp2_VIPR_ALG4_225403223_912_2666_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >S_nsp2_VIPR_ALG4_298199703_952_2706_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDNEVVVAWHVDRDPRAVMRLQTLATVRSIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKAIVQETEAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSVMVNFSREVIDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVTILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVLPVGCSEATCLVGESEPAVFEDDVVDVVKAPLIYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >RJHM_A_nsp2_VIPR_ALG4_225403216_909_2663_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVVAWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPNAIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGFRGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLAPLLLDGLVPRSYYLIKSGQAFTSLMVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVRKITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAYIMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >SA59_RJHM_nsp2_VIPR_ALG4_225403245_909_2663_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVVAWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPNAIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGFRGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSLMVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVRKITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAYIMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >UNKNOWN_AC_000192_nsp2_VIPR_ALG4_YP_209230_1_956_2710_1_NA_NA_Unknown_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVVAWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPNAIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGFRGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKAIVQETDAICRFLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSLMVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKVAVRFKALGIAVVRKITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFIQEVPELVKNFVDKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAYIMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >inf_MHV_A59_nsp2_VIPR_ALG4_225403278_926_2680_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >repA59_RJHM_nsp2_VIPR_ALG4_225403233_923_2677_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELFPVWRDSLDSEVLVAWHVDRDPRAAMRLQTLATVRCIDYVGQPTEDVVDGDVVVREPAHLLAANAIVKRLPRLVETMLYTDSSVTEFCYKTKLCECGFITQFGYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGSAVYWSPCPGMWLPVIWSSVKSYSGLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLSAYVMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA >repJHM_RA59_nsp2_VIPR_ALG4_225403300_892_2646_1_NA_USA_Mouse_Murine_coronavirus VKPILFVDQYGCDYTGCLAKGLEDYGDLTLSEMKELSPVWRDSLDNEVVVAWHVDRDPRAVMRLQTLATVRSIEYVGQPIEDMVDGDVVMREPAHLLAPNAIVKRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDTCGFRGWVPGNMMDGFPCPGCCKSYMPWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPGMWLPVIWSSVKSYSYLTYTGVVGCKAIVQETDAICRSLYMDYVQHKCGNLEQRAILGVDDVYHRQLLVNRGDYSLLLENVDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSLMVNFSREVVDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGIAVVRKITEWFDLAVDTAASAAGWLCYQLVNGLFAVANGVITFVQEVPELVKNFVDKFKTFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSKVYEVVQKSLPAYIMPVGCSEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCA
Reading sequence file /data//pss_subsets/A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/codeml/fasta/A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus.result.1
Found 29 sequences of length 1755
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 6.1%
Found 301 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0% 55.5% 88.8%100.0%100.0%
Using a window size of 80 with k as 14
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 254 polymorphic sites
**p-Value(s)**
----------
NSS: 0.00e+00 (1000 permutations)
Max Chi^2: 0.00e+00 (1000 permutations)
PHI (Permutation): 0.00e+00 (1000 permutations)
PHI (Normal): 1.13e-07
#NEXUS
[ID: 9863475003]
begin taxa;
dimensions ntax=29;
taxlabels
681_nsp2_VIPR_ALG4_381354058_921_2675_1_NA_NA_Rat_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp2_VIPR_ALG4_530291001_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp2_VIPR_ALG4_530291013_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp2_VIPR_ALG4_530291025_926_2680_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp2_VIPR_ALG4_530290989_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_JHM_IA_nsp2_VIPR_ALG4_225403289_931_2685_1_NA_USA_Mouse_Murine_coronavirus
MHV_S_3239_17_nsp2_VIPR_ALG4_380706996_952_2706_1_NA_NA_Unknown_Murine_coronavirus
MHV_MI_nsp2_VIPR_ALG4_293330423_910_2664_1_1994_Australia_Mouse_Murine_coronavirus
ML_10_nsp2_VIPR_ALG4_7769352_942_2696_1_NA_NA_Unknown_Murine_coronavirus
ML_11_nsp2_VIPR_ALG4_7739594_951_2705_1_NA_NA_Unknown_Murine_coronavirus
Parker_ORF1ab_YP_009924369_1_NA_NA_Rat_Murine_coronavirus
8190_nsp2_VIPR_ALG4_381354069_921_2675_1_NA_NA_Rat_Murine_coronavirus
Penn_97_1_nsp2_VIPR_ALG4_7769341_951_2705_1_NA_NA_Unknown_Murine_coronavirus
RA59_R13_nsp2_VIPR_ALG4_225403197_928_2682_1_2006_01_01_USA_Mouse_Murine_coronavirus
RA59_SJHM_nsp2_VIPR_ALG4_225403223_912_2666_1_NA_USA_Mouse_Murine_coronavirus
S_nsp2_VIPR_ALG4_298199703_952_2706_1_NA_USA_Mouse_Murine_coronavirus
RJHM_A_nsp2_VIPR_ALG4_225403216_909_2663_1_NA_USA_Mouse_Murine_coronavirus
SA59_RJHM_nsp2_VIPR_ALG4_225403245_909_2663_1_NA_USA_Mouse_Murine_coronavirus
UNKNOWN_AC_000192_nsp2_VIPR_ALG4_YP_209230_1_956_2710_1_NA_NA_Unknown_Murine_coronavirus
inf_MHV_A59_nsp2_VIPR_ALG4_225403278_926_2680_1_NA_USA_Mouse_Murine_coronavirus
repA59_RJHM_nsp2_VIPR_ALG4_225403233_923_2677_1_NA_USA_Mouse_Murine_coronavirus
repJHM_RA59_nsp2_VIPR_ALG4_225403300_892_2646_1_NA_USA_Mouse_Murine_coronavirus
JHM_WU_nsp2_VIPR_ALG4_397136020_935_2689_1_1947_08_14_USA_Unknown_Murine_coronavirus
A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus
JHM_WU_Dns2_nsp2_VIPR_ALG4_397136010_931_2685_1_1947_08_14_USA_Unknown_Murine_coronavirus
MHV_1_nsp2_VIPR_ALG4_225403253_932_2686_1_NA_USA_Mouse_Murine_coronavirus
MHV_3_nsp2_VIPR_ALG4_225403263_928_2682_1_NA_USA_Mouse_Murine_coronavirus
MHV_2_nsp2_VIPR_ALG4_6625760_951_2705_1_NA_NA_Unknown_Murine_coronavirus
MHV_A59_ORF1ab_YP_009915689_1_NA_NA_Unknown_Murine_coronavirus
;
end;
begin trees;
translate
1 681_nsp2_VIPR_ALG4_381354058_921_2675_1_NA_NA_Rat_Murine_coronavirus,
2 MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp2_VIPR_ALG4_530291001_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus,
3 MHV_BHKR_lab_USA_icA59_L94P_2012_nsp2_VIPR_ALG4_530291013_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus,
4 MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp2_VIPR_ALG4_530291025_926_2680_1_2012_10_25_USA_Mouse_Murine_coronavirus,
5 MHV_BHKR_lab_USA_infA59_H126A_2012_nsp2_VIPR_ALG4_530290989_930_2684_1_2012_10_25_USA_Mouse_Murine_coronavirus,
6 MHV_JHM_IA_nsp2_VIPR_ALG4_225403289_931_2685_1_NA_USA_Mouse_Murine_coronavirus,
7 MHV_S_3239_17_nsp2_VIPR_ALG4_380706996_952_2706_1_NA_NA_Unknown_Murine_coronavirus,
8 MHV_MI_nsp2_VIPR_ALG4_293330423_910_2664_1_1994_Australia_Mouse_Murine_coronavirus,
9 ML_10_nsp2_VIPR_ALG4_7769352_942_2696_1_NA_NA_Unknown_Murine_coronavirus,
10 ML_11_nsp2_VIPR_ALG4_7739594_951_2705_1_NA_NA_Unknown_Murine_coronavirus,
11 Parker_ORF1ab_YP_009924369_1_NA_NA_Rat_Murine_coronavirus,
12 8190_nsp2_VIPR_ALG4_381354069_921_2675_1_NA_NA_Rat_Murine_coronavirus,
13 Penn_97_1_nsp2_VIPR_ALG4_7769341_951_2705_1_NA_NA_Unknown_Murine_coronavirus,
14 RA59_R13_nsp2_VIPR_ALG4_225403197_928_2682_1_2006_01_01_USA_Mouse_Murine_coronavirus,
15 RA59_SJHM_nsp2_VIPR_ALG4_225403223_912_2666_1_NA_USA_Mouse_Murine_coronavirus,
16 S_nsp2_VIPR_ALG4_298199703_952_2706_1_NA_USA_Mouse_Murine_coronavirus,
17 RJHM_A_nsp2_VIPR_ALG4_225403216_909_2663_1_NA_USA_Mouse_Murine_coronavirus,
18 SA59_RJHM_nsp2_VIPR_ALG4_225403245_909_2663_1_NA_USA_Mouse_Murine_coronavirus,
19 UNKNOWN_AC_000192_nsp2_VIPR_ALG4_YP_209230_1_956_2710_1_NA_NA_Unknown_Murine_coronavirus,
20 inf_MHV_A59_nsp2_VIPR_ALG4_225403278_926_2680_1_NA_USA_Mouse_Murine_coronavirus,
21 repA59_RJHM_nsp2_VIPR_ALG4_225403233_923_2677_1_NA_USA_Mouse_Murine_coronavirus,
22 repJHM_RA59_nsp2_VIPR_ALG4_225403300_892_2646_1_NA_USA_Mouse_Murine_coronavirus,
23 JHM_WU_nsp2_VIPR_ALG4_397136020_935_2689_1_1947_08_14_USA_Unknown_Murine_coronavirus,
24 A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus,
25 JHM_WU_Dns2_nsp2_VIPR_ALG4_397136010_931_2685_1_1947_08_14_USA_Unknown_Murine_coronavirus,
26 MHV_1_nsp2_VIPR_ALG4_225403253_932_2686_1_NA_USA_Mouse_Murine_coronavirus,
27 MHV_3_nsp2_VIPR_ALG4_225403263_928_2682_1_NA_USA_Mouse_Murine_coronavirus,
28 MHV_2_nsp2_VIPR_ALG4_6625760_951_2705_1_NA_NA_Unknown_Murine_coronavirus,
29 MHV_A59_ORF1ab_YP_009915689_1_NA_NA_Unknown_Murine_coronavirus
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:1.780005e-03,(((((2:5.017803e-04,3:5.197575e-04,4:9.117022e-04,5:5.313171e-04,9:1.241797e-03,(14:5.073915e-04,15:5.260141e-04,21:5.298338e-04)0.971:1.246353e-03,20:5.224496e-04,24:5.030053e-04,29:1.213182e-03)1.000:3.255933e-02,(7:5.122470e-04,16:5.094601e-04)1.000:2.010685e-02)1.000:1.609600e-02,(((6:5.156026e-04,17:1.249580e-03,18:5.076824e-04,22:5.156160e-04)0.895:1.259685e-03,19:3.407269e-03,23:5.123930e-04,25:5.298594e-04)1.000:6.904431e-02,(26:3.305806e-02,27:7.947053e-02)0.887:1.614865e-02)0.577:1.414321e-02)0.558:8.015658e-03,8:8.949532e-02)0.997:1.733012e-02,((10:5.111555e-04,28:5.141403e-04)0.507:8.574177e-04,13:1.761386e-03)1.000:1.039636e-01)1.000:5.497720e-02,(11:5.213885e-04,12:1.237421e-03)1.000:6.004246e-03);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:1.780005e-03,(((((2:5.017803e-04,3:5.197575e-04,4:9.117022e-04,5:5.313171e-04,9:1.241797e-03,(14:5.073915e-04,15:5.260141e-04,21:5.298338e-04):1.246353e-03,20:5.224496e-04,24:5.030053e-04,29:1.213182e-03):3.255933e-02,(7:5.122470e-04,16:5.094601e-04):2.010685e-02):1.609600e-02,(((6:5.156026e-04,17:1.249580e-03,18:5.076824e-04,22:5.156160e-04):1.259685e-03,19:3.407269e-03,23:5.123930e-04,25:5.298594e-04):6.904431e-02,(26:3.305806e-02,27:7.947053e-02):1.614865e-02):1.414321e-02):8.015658e-03,8:8.949532e-02):1.733012e-02,((10:5.111555e-04,28:5.141403e-04):8.574177e-04,13:1.761386e-03):1.039636e-01):5.497720e-02,(11:5.213885e-04,12:1.237421e-03):6.004246e-03);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -5389.41 -5422.61
2 -5392.23 -5425.07
--------------------------------------
TOTAL -5390.04 -5424.46
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.608359 0.002116 0.527358 0.704177 0.606125 1455.61 1478.30 1.000
r(A<->C){all} 0.059124 0.000186 0.034455 0.087697 0.058256 1023.07 1027.70 1.001
r(A<->G){all} 0.318973 0.000890 0.259806 0.375560 0.318133 652.83 692.20 1.000
r(A<->T){all} 0.075510 0.000151 0.051883 0.098534 0.075075 674.36 753.55 1.000
r(C<->G){all} 0.040584 0.000119 0.019060 0.061073 0.040089 948.73 1019.34 1.000
r(C<->T){all} 0.440024 0.000984 0.378942 0.501607 0.439446 621.18 671.35 1.000
r(G<->T){all} 0.065785 0.000104 0.046656 0.086111 0.065325 914.21 960.73 1.000
pi(A){all} 0.214903 0.000089 0.197058 0.233683 0.214472 982.12 1145.69 1.000
pi(C){all} 0.183806 0.000073 0.167651 0.200868 0.183721 1006.43 1028.57 1.000
pi(G){all} 0.270866 0.000096 0.251063 0.289258 0.270781 1131.00 1157.32 1.000
pi(T){all} 0.330426 0.000113 0.309922 0.352214 0.330287 857.98 926.02 1.000
alpha{1,2} 0.237765 0.001249 0.174566 0.307454 0.233910 1247.12 1289.95 1.000
alpha{3} 4.200756 2.257939 1.748914 7.232354 3.956183 1226.19 1303.40 1.000
pinvar{all} 0.501373 0.001323 0.431246 0.570610 0.504104 998.86 1115.36 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/A59_ORF1ab_YP_009924343_1_NA_USA_Unknown_Murine_coronavirus.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 29 ls = 585
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 21 21 20 19 20 20 | Ser TCT 11 11 11 12 11 11 | Tyr TAT 19 19 22 21 22 17 | Cys TGT 18 17 19 19 19 14
TTC 9 8 7 9 7 8 | TCC 2 2 4 3 4 3 | TAC 8 8 5 4 5 9 | TGC 8 9 8 9 8 11
Leu TTA 10 11 10 6 10 7 | TCA 4 4 4 4 4 4 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 12 11 13 17 13 14 | TCG 3 3 2 2 2 3 | TAG 0 0 0 0 0 0 | Trp TGG 10 10 10 10 10 10
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 13 14 12 13 12 12 | Pro CCT 9 9 12 9 12 12 | His CAT 6 6 4 5 4 6 | Arg CGT 7 7 8 8 8 6
CTC 5 5 8 9 8 8 | CCC 6 6 8 7 8 4 | CAC 1 1 2 2 2 1 | CGC 4 4 4 3 4 6
CTA 7 7 4 3 4 4 | CCA 7 7 5 7 5 6 | Gln CAA 5 5 5 5 5 5 | CGA 0 0 2 1 2 1
CTG 9 9 8 7 8 9 | CCG 3 3 2 1 2 3 | CAG 12 12 12 12 12 12 | CGG 3 3 1 2 1 2
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 8 8 11 10 11 11 | Thr ACT 17 17 16 16 16 17 | Asn AAT 10 10 10 12 10 10 | Ser AGT 9 9 8 7 8 7
ATC 5 5 6 5 6 4 | ACC 5 5 4 8 4 5 | AAC 2 2 3 1 3 2 | AGC 5 5 4 4 4 6
ATA 2 2 3 3 3 5 | ACA 6 6 7 5 7 6 | Lys AAA 9 9 11 11 11 13 | Arg AGA 5 5 2 4 2 3
Met ATG 15 15 18 17 18 17 | ACG 3 3 2 2 2 0 | AAG 23 23 22 22 22 20 | AGG 3 3 5 3 5 4
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 34 34 33 32 33 36 | Ala GCT 17 17 18 17 18 17 | Asp GAT 28 27 21 27 21 25 | Gly GGT 20 21 19 20 19 19
GTC 6 6 9 6 9 6 | GCC 15 15 11 16 11 12 | GAC 14 14 19 14 19 16 | GGC 12 11 13 11 13 14
GTA 12 12 7 8 7 7 | GCA 7 7 5 6 5 7 | Glu GAA 12 12 12 11 12 13 | GGA 9 9 7 8 7 8
GTG 24 24 25 30 25 27 | GCG 2 3 4 2 4 5 | GAG 13 13 15 16 15 14 | GGG 1 1 3 2 3 1
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 21 19 19 19 19 20 | Ser TCT 14 11 12 12 12 12 | Tyr TAT 18 19 21 21 21 21 | Cys TGT 15 21 19 19 19 19
TTC 7 8 9 9 9 8 | TCC 2 4 3 3 3 3 | TAC 8 7 4 4 4 4 | TGC 12 7 9 9 9 9
Leu TTA 12 7 6 6 6 6 | TCA 4 3 4 4 4 4 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 11 17 17 17 17 17 | TCG 2 2 2 2 2 2 | TAG 0 0 0 0 0 0 | Trp TGG 10 10 10 10 10 10
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 11 14 13 13 13 13 | Pro CCT 12 11 9 9 9 9 | His CAT 5 6 5 5 5 5 | Arg CGT 6 6 8 8 8 8
CTC 7 7 9 9 9 9 | CCC 6 6 7 7 7 7 | CAC 1 1 2 2 2 2 | CGC 5 5 3 3 3 3
CTA 4 7 3 3 3 3 | CCA 5 5 7 7 7 7 | Gln CAA 4 6 5 5 5 5 | CGA 1 0 1 1 1 1
CTG 9 5 7 7 7 7 | CCG 2 1 1 1 1 1 | CAG 14 10 12 12 12 12 | CGG 2 4 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 9 11 10 10 10 10 | Thr ACT 17 19 16 16 16 16 | Asn AAT 11 13 12 12 12 12 | Ser AGT 7 5 8 7 7 7
ATC 5 4 5 5 5 5 | ACC 5 4 8 8 8 8 | AAC 3 1 1 1 1 1 | AGC 5 6 3 4 4 4
ATA 4 2 3 3 3 3 | ACA 6 4 5 5 5 5 | Lys AAA 11 10 11 11 11 11 | Arg AGA 2 3 4 4 4 4
Met ATG 19 17 17 17 17 17 | ACG 1 3 2 2 2 2 | AAG 21 24 22 22 22 22 | AGG 5 4 3 3 3 3
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 37 39 32 32 32 32 | Ala GCT 19 15 17 17 17 17 | Asp GAT 27 29 27 27 27 27 | Gly GGT 18 21 20 20 20 20
GTC 9 6 6 6 6 6 | GCC 12 17 16 16 16 16 | GAC 12 14 14 14 14 14 | GGC 16 13 11 11 11 11
GTA 8 7 8 8 8 8 | GCA 6 7 6 6 6 6 | Glu GAA 12 11 11 11 11 11 | GGA 7 5 8 8 8 8
GTG 21 24 30 30 30 30 | GCG 3 1 2 2 2 2 | GAG 16 14 16 16 16 16 | GGG 1 3 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 19 20 19 19 19 19 | Ser TCT 12 11 10 10 12 11 | Tyr TAT 21 22 21 21 21 19 | Cys TGT 19 19 15 18 19 21
TTC 9 7 9 9 9 8 | TCC 3 4 3 4 3 4 | TAC 4 5 4 5 4 7 | TGC 9 8 12 10 9 7
Leu TTA 6 10 10 9 6 7 | TCA 4 4 5 4 4 3 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 17 12 12 14 16 17 | TCG 2 2 2 2 2 2 | TAG 0 0 0 0 0 0 | Trp TGG 10 10 10 10 11 10
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 13 12 15 13 13 14 | Pro CCT 9 12 9 10 9 11 | His CAT 5 4 5 5 5 6 | Arg CGT 8 8 9 8 8 6
CTC 9 8 7 6 9 7 | CCC 7 8 7 6 7 6 | CAC 2 2 1 1 2 1 | CGC 3 4 3 3 3 5
CTA 3 4 4 5 3 7 | CCA 7 5 7 6 7 5 | Gln CAA 5 5 5 4 5 6 | CGA 1 2 1 1 1 0
CTG 7 8 7 7 7 5 | CCG 1 2 1 3 1 1 | CAG 12 12 12 12 12 10 | CGG 2 1 2 2 2 4
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 10 11 10 11 10 11 | Thr ACT 16 16 16 15 16 19 | Asn AAT 12 10 11 11 12 13 | Ser AGT 7 8 8 8 7 5
ATC 5 6 5 4 5 4 | ACC 8 4 8 7 8 4 | AAC 1 3 3 4 1 1 | AGC 4 4 4 4 4 6
ATA 3 3 4 2 3 2 | ACA 5 7 4 6 5 4 | Lys AAA 11 11 9 12 11 10 | Arg AGA 4 2 3 3 4 3
Met ATG 17 18 15 16 17 17 | ACG 2 2 2 1 2 3 | AAG 22 22 24 22 22 24 | AGG 3 5 4 4 3 4
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 32 33 34 30 32 39 | Ala GCT 17 18 14 18 17 15 | Asp GAT 27 21 26 24 27 29 | Gly GGT 20 19 18 19 20 21
GTC 6 9 7 8 6 6 | GCC 16 11 17 14 16 17 | GAC 14 19 14 17 14 14 | GGC 11 13 13 13 11 13
GTA 8 7 9 11 8 7 | GCA 6 5 7 9 6 7 | Glu GAA 11 12 14 10 11 11 | GGA 8 7 8 9 8 5
GTG 30 26 29 29 30 24 | GCG 2 4 2 1 2 1 | GAG 16 15 14 14 16 14 | GGG 2 3 2 2 2 3
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 21 19 19 19 19 20 | Ser TCT 11 11 11 11 10 11 | Tyr TAT 19 19 21 21 21 22 | Cys TGT 17 21 19 19 15 19
TTC 8 8 9 9 9 7 | TCC 2 4 4 4 3 4 | TAC 8 7 4 4 4 5 | TGC 9 8 9 9 12 8
Leu TTA 11 7 6 6 10 10 | TCA 4 3 4 4 5 4 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 11 17 17 17 12 12 | TCG 3 2 2 2 2 2 | TAG 0 0 0 0 0 0 | Trp TGG 10 10 10 10 10 10
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 14 14 13 13 15 12 | Pro CCT 9 11 9 9 9 12 | His CAT 6 6 5 5 5 4 | Arg CGT 7 6 8 8 9 8
CTC 5 7 9 9 7 8 | CCC 6 6 7 7 7 8 | CAC 1 1 2 2 1 2 | CGC 4 5 3 3 3 4
CTA 7 7 3 3 4 4 | CCA 7 5 7 7 7 5 | Gln CAA 5 6 5 5 5 5 | CGA 0 0 1 1 1 2
CTG 9 5 7 7 7 8 | CCG 3 1 1 1 1 2 | CAG 12 10 12 12 12 12 | CGG 3 4 2 2 2 1
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 8 11 10 10 10 11 | Thr ACT 17 19 16 16 16 16 | Asn AAT 10 13 12 12 11 10 | Ser AGT 9 5 7 7 8 8
ATC 5 4 5 5 5 6 | ACC 5 4 8 8 8 4 | AAC 2 1 1 1 3 3 | AGC 5 5 4 4 4 4
ATA 2 1 3 3 4 3 | ACA 6 4 5 5 4 7 | Lys AAA 9 10 11 11 9 11 | Arg AGA 5 3 4 4 3 2
Met ATG 15 17 17 17 15 18 | ACG 3 3 2 2 2 2 | AAG 23 24 22 22 24 22 | AGG 3 4 3 3 4 5
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 34 39 32 32 34 33 | Ala GCT 17 15 17 17 14 18 | Asp GAT 27 29 27 27 26 21 | Gly GGT 21 21 20 20 18 19
GTC 6 6 6 6 7 9 | GCC 15 17 16 16 17 11 | GAC 14 14 14 14 14 19 | GGC 11 13 11 11 13 13
GTA 12 8 8 8 9 6 | GCA 7 7 6 6 7 6 | Glu GAA 12 11 11 11 14 12 | GGA 9 5 8 8 8 7
GTG 24 24 30 30 29 26 | GCG 2 1 2 2 2 4 | GAG 14 14 16 16 14 15 | GGG 1 3 2 2 2 3
--------------------------------------------------------------------------------------------------------------------------------------
----------------------------------------------------------------------------------------------------------------------
Phe TTT 20 21 19 19 20 | Ser TCT 11 10 12 11 11 | Tyr TAT 22 22 21 21 22 | Cys TGT 19 19 19 19 19
TTC 7 7 9 9 7 | TCC 4 4 3 4 4 | TAC 5 5 4 4 5 | TGC 8 8 9 9 8
Leu TTA 10 10 6 6 10 | TCA 4 4 4 4 4 | *** TAA 0 0 0 0 0 | *** TGA 0 0 0 0 0
TTG 12 13 17 17 12 | TCG 2 2 2 2 2 | TAG 0 0 0 0 0 | Trp TGG 10 10 10 10 10
----------------------------------------------------------------------------------------------------------------------
Leu CTT 12 12 13 13 12 | Pro CCT 12 12 9 9 12 | His CAT 4 4 5 5 4 | Arg CGT 8 8 8 8 8
CTC 8 8 9 9 8 | CCC 8 8 7 7 8 | CAC 2 2 2 2 2 | CGC 4 4 3 3 4
CTA 4 3 3 3 4 | CCA 5 5 7 7 5 | Gln CAA 5 5 5 5 5 | CGA 2 2 1 1 2
CTG 8 8 7 7 8 | CCG 2 2 1 1 2 | CAG 12 12 12 12 12 | CGG 1 1 2 2 1
----------------------------------------------------------------------------------------------------------------------
Ile ATT 11 11 10 10 11 | Thr ACT 16 16 16 16 16 | Asn AAT 10 10 12 12 10 | Ser AGT 8 8 7 7 8
ATC 6 6 5 5 6 | ACC 4 4 8 8 4 | AAC 3 3 1 1 3 | AGC 4 4 4 4 4
ATA 3 4 3 3 3 | ACA 7 7 5 5 7 | Lys AAA 11 11 11 11 11 | Arg AGA 2 2 4 4 2
Met ATG 18 18 17 17 18 | ACG 2 2 2 2 2 | AAG 22 22 22 22 22 | AGG 5 5 3 3 5
----------------------------------------------------------------------------------------------------------------------
Val GTT 33 33 32 32 33 | Ala GCT 18 18 17 17 18 | Asp GAT 21 21 27 27 21 | Gly GGT 19 19 20 20 19
GTC 9 9 6 6 9 | GCC 11 11 16 16 11 | GAC 19 19 14 14 19 | GGC 13 13 11 11 13
GTA 7 8 8 8 7 | GCA 5 5 6 6 5 | Glu GAA 12 12 11 11 12 | GGA 7 7 8 8 7
GTG 26 24 30 30 26 | GCG 4 4 2 2 4 | GAG 15 15 16 16 15 | GGG 3 3 2 2 3
----------------------------------------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C1
position 1: T:0.23077 C:0.16581 A:0.21709 G:0.38632
position 2: T:0.32821 C:0.20000 A:0.27692 G:0.19487
position 3: T:0.42222 C:0.18291 A:0.16239 G:0.23248
Average T:0.32707 C:0.18291 A:0.21880 G:0.27123
#2: C2
position 1: T:0.22906 C:0.16752 A:0.21709 G:0.38632
position 2: T:0.32821 C:0.20171 A:0.27521 G:0.19487
position 3: T:0.42222 C:0.18120 A:0.16410 G:0.23248
Average T:0.32650 C:0.18348 A:0.21880 G:0.27123
#3: C3
position 1: T:0.23077 C:0.16581 A:0.22564 G:0.37778
position 2: T:0.33162 C:0.19658 A:0.27863 G:0.19316
position 3: T:0.41709 C:0.19658 A:0.14359 G:0.24274
Average T:0.32650 C:0.18632 A:0.21595 G:0.27123
#4: C4
position 1: T:0.23077 C:0.16068 A:0.22222 G:0.38632
position 2: T:0.33162 C:0.20000 A:0.27863 G:0.18974
position 3: T:0.42222 C:0.18974 A:0.14017 G:0.24786
Average T:0.32821 C:0.18348 A:0.21368 G:0.27464
#5: C5
position 1: T:0.23077 C:0.16581 A:0.22564 G:0.37778
position 2: T:0.33162 C:0.19658 A:0.27863 G:0.19316
position 3: T:0.41709 C:0.19658 A:0.14359 G:0.24274
Average T:0.32650 C:0.18632 A:0.21595 G:0.27123
#6: C6
position 1: T:0.22393 C:0.16581 A:0.22222 G:0.38803
position 2: T:0.33333 C:0.19658 A:0.27863 G:0.19145
position 3: T:0.41026 C:0.19658 A:0.15214 G:0.24103
Average T:0.32251 C:0.18632 A:0.21766 G:0.27350
#7: C7
position 1: T:0.23248 C:0.16068 A:0.22393 G:0.38291
position 2: T:0.33162 C:0.19829 A:0.27863 G:0.19145
position 3: T:0.42222 C:0.19658 A:0.14701 G:0.23419
Average T:0.32877 C:0.18519 A:0.21652 G:0.26952
#8: C8
position 1: T:0.23077 C:0.16068 A:0.22222 G:0.38632
position 2: T:0.33162 C:0.19316 A:0.28205 G:0.19316
position 3: T:0.44274 C:0.18803 A:0.13162 G:0.23761
Average T:0.33504 C:0.18063 A:0.21197 G:0.27236
#9: C9
position 1: T:0.23077 C:0.16068 A:0.22222 G:0.38632
position 2: T:0.33162 C:0.20000 A:0.27863 G:0.18974
position 3: T:0.42393 C:0.18803 A:0.14017 G:0.24786
Average T:0.32877 C:0.18291 A:0.21368 G:0.27464
#10: C10
position 1: T:0.23077 C:0.16068 A:0.22222 G:0.38632
position 2: T:0.33162 C:0.20000 A:0.27863 G:0.18974
position 3: T:0.42222 C:0.18974 A:0.14017 G:0.24786
Average T:0.32821 C:0.18348 A:0.21368 G:0.27464
#11: C11
position 1: T:0.23077 C:0.16068 A:0.22222 G:0.38632
position 2: T:0.33162 C:0.20000 A:0.27863 G:0.18974
position 3: T:0.42222 C:0.18974 A:0.14017 G:0.24786
Average T:0.32821 C:0.18348 A:0.21368 G:0.27464
#12: C12
position 1: T:0.23077 C:0.16068 A:0.22222 G:0.38632
position 2: T:0.33162 C:0.20000 A:0.27863 G:0.18974
position 3: T:0.42393 C:0.18803 A:0.14017 G:0.24786
Average T:0.32877 C:0.18291 A:0.21368 G:0.27464
#13: C13
position 1: T:0.23077 C:0.16068 A:0.22222 G:0.38632
position 2: T:0.33162 C:0.20000 A:0.27863 G:0.18974
position 3: T:0.42222 C:0.18974 A:0.14017 G:0.24786
Average T:0.32821 C:0.18348 A:0.21368 G:0.27464
#14: C14
position 1: T:0.22906 C:0.16581 A:0.22564 G:0.37949
position 2: T:0.33162 C:0.19658 A:0.27863 G:0.19316
position 3: T:0.41709 C:0.19658 A:0.14359 G:0.24274
Average T:0.32593 C:0.18632 A:0.21595 G:0.27179
#15: C15
position 1: T:0.22564 C:0.16239 A:0.22222 G:0.38974
position 2: T:0.33504 C:0.19487 A:0.27863 G:0.19145
position 3: T:0.41026 C:0.20000 A:0.15385 G:0.23590
Average T:0.32365 C:0.18575 A:0.21823 G:0.27236
#16: C16
position 1: T:0.23077 C:0.15726 A:0.22222 G:0.38974
position 2: T:0.32991 C:0.19829 A:0.27692 G:0.19487
position 3: T:0.41026 C:0.19658 A:0.15556 G:0.23761
Average T:0.32365 C:0.18405 A:0.21823 G:0.27407
#17: C17
position 1: T:0.23077 C:0.16068 A:0.22222 G:0.38632
position 2: T:0.32991 C:0.20000 A:0.27863 G:0.19145
position 3: T:0.42222 C:0.18974 A:0.14017 G:0.24786
Average T:0.32764 C:0.18348 A:0.21368 G:0.27521
#18: C18
position 1: T:0.23077 C:0.16068 A:0.22222 G:0.38632
position 2: T:0.33162 C:0.19316 A:0.28205 G:0.19316
position 3: T:0.44274 C:0.18803 A:0.13162 G:0.23761
Average T:0.33504 C:0.18063 A:0.21197 G:0.27236
#19: C19
position 1: T:0.22906 C:0.16752 A:0.21709 G:0.38632
position 2: T:0.32821 C:0.20000 A:0.27692 G:0.19487
position 3: T:0.42222 C:0.18120 A:0.16410 G:0.23248
Average T:0.32650 C:0.18291 A:0.21937 G:0.27123
#20: C20
position 1: T:0.23248 C:0.16068 A:0.21880 G:0.38803
position 2: T:0.33162 C:0.19316 A:0.28205 G:0.19316
position 3: T:0.44274 C:0.18803 A:0.13162 G:0.23761
Average T:0.33561 C:0.18063 A:0.21083 G:0.27293
#21: C21
position 1: T:0.23077 C:0.16068 A:0.22222 G:0.38632
position 2: T:0.33162 C:0.20000 A:0.27863 G:0.18974
position 3: T:0.42051 C:0.19145 A:0.14017 G:0.24786
Average T:0.32764 C:0.18405 A:0.21368 G:0.27464
#22: C22
position 1: T:0.23077 C:0.16068 A:0.22222 G:0.38632
position 2: T:0.33162 C:0.20000 A:0.27863 G:0.18974
position 3: T:0.42051 C:0.19145 A:0.14017 G:0.24786
Average T:0.32764 C:0.18405 A:0.21368 G:0.27464
#23: C23
position 1: T:0.22564 C:0.16239 A:0.22222 G:0.38974
position 2: T:0.33504 C:0.19487 A:0.27863 G:0.19145
position 3: T:0.41026 C:0.20000 A:0.15385 G:0.23590
Average T:0.32365 C:0.18575 A:0.21823 G:0.27236
#24: C24
position 1: T:0.22906 C:0.16581 A:0.22564 G:0.37949
position 2: T:0.32991 C:0.19829 A:0.27863 G:0.19316
position 3: T:0.41709 C:0.19658 A:0.14359 G:0.24274
Average T:0.32536 C:0.18689 A:0.21595 G:0.27179
#25: C25
position 1: T:0.22906 C:0.16581 A:0.22564 G:0.37949
position 2: T:0.33162 C:0.19658 A:0.27863 G:0.19316
position 3: T:0.41709 C:0.19658 A:0.14359 G:0.24274
Average T:0.32593 C:0.18632 A:0.21595 G:0.27179
#26: C26
position 1: T:0.23077 C:0.16410 A:0.22735 G:0.37778
position 2: T:0.33333 C:0.19487 A:0.27863 G:0.19316
position 3: T:0.41709 C:0.19658 A:0.14530 G:0.24103
Average T:0.32707 C:0.18519 A:0.21709 G:0.27066
#27: C27
position 1: T:0.23077 C:0.16068 A:0.22222 G:0.38632
position 2: T:0.33162 C:0.20000 A:0.27863 G:0.18974
position 3: T:0.42222 C:0.18974 A:0.14017 G:0.24786
Average T:0.32821 C:0.18348 A:0.21368 G:0.27464
#28: C28
position 1: T:0.23077 C:0.16068 A:0.22222 G:0.38632
position 2: T:0.33162 C:0.20000 A:0.27863 G:0.18974
position 3: T:0.42051 C:0.19145 A:0.14017 G:0.24786
Average T:0.32764 C:0.18405 A:0.21368 G:0.27464
#29: C29
position 1: T:0.22906 C:0.16581 A:0.22564 G:0.37949
position 2: T:0.33162 C:0.19658 A:0.27863 G:0.19316
position 3: T:0.41709 C:0.19658 A:0.14359 G:0.24274
Average T:0.32593 C:0.18632 A:0.21595 G:0.27179
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 569 | Ser S TCT 326 | Tyr Y TAT 597 | Cys C TGT 534
TTC 238 | TCC 97 | TAC 154 | TGC 260
Leu L TTA 237 | TCA 115 | *** * TAA 0 | *** * TGA 0
TTG 421 | TCG 62 | TAG 0 | Trp W TGG 291
------------------------------------------------------------------------------
Leu L CTT 376 | Pro P CCT 295 | His H CAT 145 | Arg R CGT 221
CTC 226 | CCC 199 | CAC 47 | CGC 108
CTA 123 | CCA 179 | Gln Q CAA 146 | CGA 30
CTG 214 | CCG 47 | CAG 344 | CGG 60
------------------------------------------------------------------------------
Ile I ATT 295 | Thr T ACT 477 | Asn N AAT 325 | Ser S AGT 214
ATC 147 | ACC 176 | AAC 56 | AGC 126
ATA 85 | ACA 160 | Lys K AAA 309 | Arg R AGA 96
Met M ATG 491 | ACG 60 | AAG 648 | AGG 110
------------------------------------------------------------------------------
Val V GTT 973 | Ala A GCT 491 | Asp D GAT 741 | Gly G GGT 570
GTC 202 | GCC 421 | GAC 444 | GGC 354
GTA 239 | GCA 180 | Glu E GAA 337 | GGA 219
GTG 787 | GCG 73 | GAG 435 | GGG 63
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.22994 C:0.16269 A:0.22252 G:0.38485
position 2: T:0.33145 C:0.19794 A:0.27869 G:0.19192
position 3: T:0.42140 C:0.19187 A:0.14471 G:0.24203
Average T:0.32760 C:0.18416 A:0.21531 G:0.27293
Model 1: NearlyNeutral (2 categories)
TREE # 1: (1, (((((10, 11, 12, 13, 17, (21, 22, 28), 27, 4, 9), (15, 23)), (((14, 24, 25, 29), 26, 3, 5), (6, 7))), 16), ((18, 8), 20)), (19, 2)); MP score: 566
lnL(ntime: 43 np: 46): -5223.095397 +0.000000
30..1 30..31 31..32 32..33 33..34 34..35 35..10 35..11 35..12 35..13 35..17 35..36 36..21 36..22 36..28 35..27 35..4 35..9 34..37 37..15 37..23 33..38 38..39 39..40 40..14 40..24 40..25 40..29 39..26 39..3 39..5 38..41 41..6 41..7 32..16 31..42 42..43 43..18 43..8 42..20 30..44 44..19 44..2
0.003116 0.117793 0.036994 0.018658 0.033296 0.073638 0.000004 0.000004 0.001788 0.000004 0.001789 0.001788 0.000004 0.000004 0.000004 0.000004 0.000004 0.001787 0.046202 0.000004 0.000004 0.030767 0.148063 0.001772 0.000004 0.001771 0.000004 0.000004 0.007107 0.000004 0.000004 0.037580 0.073526 0.165770 0.188099 0.214283 0.001373 0.000004 0.000004 0.002181 0.012908 0.000004 0.001762 3.456407 0.908140 0.047105
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.223880
(1: 0.003116, (((((10: 0.000004, 11: 0.000004, 12: 0.001788, 13: 0.000004, 17: 0.001789, (21: 0.000004, 22: 0.000004, 28: 0.000004): 0.001788, 27: 0.000004, 4: 0.000004, 9: 0.001787): 0.073638, (15: 0.000004, 23: 0.000004): 0.046202): 0.033296, (((14: 0.000004, 24: 0.001771, 25: 0.000004, 29: 0.000004): 0.001772, 26: 0.007107, 3: 0.000004, 5: 0.000004): 0.148063, (6: 0.073526, 7: 0.165770): 0.037580): 0.030767): 0.018658, 16: 0.188099): 0.036994, ((18: 0.000004, 8: 0.000004): 0.001373, 20: 0.002181): 0.214283): 0.117793, (19: 0.000004, 2: 0.001762): 0.012908);
(C1: 0.003116, (((((C10: 0.000004, C11: 0.000004, C12: 0.001788, C13: 0.000004, C17: 0.001789, (C21: 0.000004, C22: 0.000004, C28: 0.000004): 0.001788, C27: 0.000004, C4: 0.000004, C9: 0.001787): 0.073638, (C15: 0.000004, C23: 0.000004): 0.046202): 0.033296, (((C14: 0.000004, C24: 0.001771, C25: 0.000004, C29: 0.000004): 0.001772, C26: 0.007107, C3: 0.000004, C5: 0.000004): 0.148063, (C6: 0.073526, C7: 0.165770): 0.037580): 0.030767): 0.018658, C16: 0.188099): 0.036994, ((C18: 0.000004, C8: 0.000004): 0.001373, C20: 0.002181): 0.214283): 0.117793, (C19: 0.000004, C2: 0.001762): 0.012908);
Detailed output identifying parameters
kappa (ts/tv) = 3.45641
MLEs of dN/dS (w) for site classes (K=2)
p: 0.90814 0.09186
w: 0.04710 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
30..1 0.003 1297.2 457.8 0.1346 0.0004 0.0029 0.5 1.3
30..31 0.118 1297.2 457.8 0.1346 0.0147 0.1090 19.0 49.9
31..32 0.037 1297.2 457.8 0.1346 0.0046 0.0342 6.0 15.7
32..33 0.019 1297.2 457.8 0.1346 0.0023 0.0173 3.0 7.9
33..34 0.033 1297.2 457.8 0.1346 0.0041 0.0308 5.4 14.1
34..35 0.074 1297.2 457.8 0.1346 0.0092 0.0681 11.9 31.2
35..10 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
35..11 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
35..12 0.002 1297.2 457.8 0.1346 0.0002 0.0017 0.3 0.8
35..13 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
35..17 0.002 1297.2 457.8 0.1346 0.0002 0.0017 0.3 0.8
35..36 0.002 1297.2 457.8 0.1346 0.0002 0.0017 0.3 0.8
36..21 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
36..22 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
36..28 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
35..27 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
35..4 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
35..9 0.002 1297.2 457.8 0.1346 0.0002 0.0017 0.3 0.8
34..37 0.046 1297.2 457.8 0.1346 0.0058 0.0427 7.5 19.6
37..15 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
37..23 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
33..38 0.031 1297.2 457.8 0.1346 0.0038 0.0285 5.0 13.0
38..39 0.148 1297.2 457.8 0.1346 0.0184 0.1370 23.9 62.7
39..40 0.002 1297.2 457.8 0.1346 0.0002 0.0016 0.3 0.8
40..14 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
40..24 0.002 1297.2 457.8 0.1346 0.0002 0.0016 0.3 0.7
40..25 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
40..29 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
39..26 0.007 1297.2 457.8 0.1346 0.0009 0.0066 1.1 3.0
39..3 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
39..5 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
38..41 0.038 1297.2 457.8 0.1346 0.0047 0.0348 6.1 15.9
41..6 0.074 1297.2 457.8 0.1346 0.0092 0.0680 11.9 31.1
41..7 0.166 1297.2 457.8 0.1346 0.0206 0.1533 26.8 70.2
32..16 0.188 1297.2 457.8 0.1346 0.0234 0.1740 30.4 79.6
31..42 0.214 1297.2 457.8 0.1346 0.0267 0.1982 34.6 90.7
42..43 0.001 1297.2 457.8 0.1346 0.0002 0.0013 0.2 0.6
43..18 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
43..8 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
42..20 0.002 1297.2 457.8 0.1346 0.0003 0.0020 0.4 0.9
30..44 0.013 1297.2 457.8 0.1346 0.0016 0.0119 2.1 5.5
44..19 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
44..2 0.002 1297.2 457.8 0.1346 0.0002 0.0016 0.3 0.7
Time used: 5:22
Model 2: PositiveSelection (3 categories)
TREE # 1: (1, (((((10, 11, 12, 13, 17, (21, 22, 28), 27, 4, 9), (15, 23)), (((14, 24, 25, 29), 26, 3, 5), (6, 7))), 16), ((18, 8), 20)), (19, 2)); MP score: 566
check convergence..
lnL(ntime: 43 np: 48): -5223.095397 +0.000000
30..1 30..31 31..32 32..33 33..34 34..35 35..10 35..11 35..12 35..13 35..17 35..36 36..21 36..22 36..28 35..27 35..4 35..9 34..37 37..15 37..23 33..38 38..39 39..40 40..14 40..24 40..25 40..29 39..26 39..3 39..5 38..41 41..6 41..7 32..16 31..42 42..43 43..18 43..8 42..20 30..44 44..19 44..2
0.003116 0.117792 0.036993 0.018658 0.033295 0.073638 0.000004 0.000004 0.001788 0.000004 0.001789 0.001788 0.000004 0.000004 0.000004 0.000004 0.000004 0.001787 0.046202 0.000004 0.000004 0.030767 0.148062 0.001772 0.000004 0.001771 0.000004 0.000004 0.007107 0.000004 0.000004 0.037580 0.073526 0.165770 0.188098 0.214282 0.001373 0.000004 0.000004 0.002181 0.012908 0.000004 0.001762 3.456396 0.908140 0.039509 0.047104 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.223876
(1: 0.003116, (((((10: 0.000004, 11: 0.000004, 12: 0.001788, 13: 0.000004, 17: 0.001789, (21: 0.000004, 22: 0.000004, 28: 0.000004): 0.001788, 27: 0.000004, 4: 0.000004, 9: 0.001787): 0.073638, (15: 0.000004, 23: 0.000004): 0.046202): 0.033295, (((14: 0.000004, 24: 0.001771, 25: 0.000004, 29: 0.000004): 0.001772, 26: 0.007107, 3: 0.000004, 5: 0.000004): 0.148062, (6: 0.073526, 7: 0.165770): 0.037580): 0.030767): 0.018658, 16: 0.188098): 0.036993, ((18: 0.000004, 8: 0.000004): 0.001373, 20: 0.002181): 0.214282): 0.117792, (19: 0.000004, 2: 0.001762): 0.012908);
(C1: 0.003116, (((((C10: 0.000004, C11: 0.000004, C12: 0.001788, C13: 0.000004, C17: 0.001789, (C21: 0.000004, C22: 0.000004, C28: 0.000004): 0.001788, C27: 0.000004, C4: 0.000004, C9: 0.001787): 0.073638, (C15: 0.000004, C23: 0.000004): 0.046202): 0.033295, (((C14: 0.000004, C24: 0.001771, C25: 0.000004, C29: 0.000004): 0.001772, C26: 0.007107, C3: 0.000004, C5: 0.000004): 0.148062, (C6: 0.073526, C7: 0.165770): 0.037580): 0.030767): 0.018658, C16: 0.188098): 0.036993, ((C18: 0.000004, C8: 0.000004): 0.001373, C20: 0.002181): 0.214282): 0.117792, (C19: 0.000004, C2: 0.001762): 0.012908);
Detailed output identifying parameters
kappa (ts/tv) = 3.45640
MLEs of dN/dS (w) for site classes (K=3)
p: 0.90814 0.03951 0.05235
w: 0.04710 1.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
30..1 0.003 1297.2 457.8 0.1346 0.0004 0.0029 0.5 1.3
30..31 0.118 1297.2 457.8 0.1346 0.0147 0.1090 19.0 49.9
31..32 0.037 1297.2 457.8 0.1346 0.0046 0.0342 6.0 15.7
32..33 0.019 1297.2 457.8 0.1346 0.0023 0.0173 3.0 7.9
33..34 0.033 1297.2 457.8 0.1346 0.0041 0.0308 5.4 14.1
34..35 0.074 1297.2 457.8 0.1346 0.0092 0.0681 11.9 31.2
35..10 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
35..11 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
35..12 0.002 1297.2 457.8 0.1346 0.0002 0.0017 0.3 0.8
35..13 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
35..17 0.002 1297.2 457.8 0.1346 0.0002 0.0017 0.3 0.8
35..36 0.002 1297.2 457.8 0.1346 0.0002 0.0017 0.3 0.8
36..21 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
36..22 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
36..28 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
35..27 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
35..4 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
35..9 0.002 1297.2 457.8 0.1346 0.0002 0.0017 0.3 0.8
34..37 0.046 1297.2 457.8 0.1346 0.0058 0.0427 7.5 19.6
37..15 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
37..23 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
33..38 0.031 1297.2 457.8 0.1346 0.0038 0.0285 5.0 13.0
38..39 0.148 1297.2 457.8 0.1346 0.0184 0.1370 23.9 62.7
39..40 0.002 1297.2 457.8 0.1346 0.0002 0.0016 0.3 0.8
40..14 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
40..24 0.002 1297.2 457.8 0.1346 0.0002 0.0016 0.3 0.7
40..25 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
40..29 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
39..26 0.007 1297.2 457.8 0.1346 0.0009 0.0066 1.1 3.0
39..3 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
39..5 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
38..41 0.038 1297.2 457.8 0.1346 0.0047 0.0348 6.1 15.9
41..6 0.074 1297.2 457.8 0.1346 0.0092 0.0680 11.9 31.1
41..7 0.166 1297.2 457.8 0.1346 0.0206 0.1533 26.8 70.2
32..16 0.188 1297.2 457.8 0.1346 0.0234 0.1740 30.4 79.6
31..42 0.214 1297.2 457.8 0.1346 0.0267 0.1982 34.6 90.7
42..43 0.001 1297.2 457.8 0.1346 0.0002 0.0013 0.2 0.6
43..18 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
43..8 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
42..20 0.002 1297.2 457.8 0.1346 0.0003 0.0020 0.4 0.9
30..44 0.013 1297.2 457.8 0.1346 0.0016 0.0119 2.1 5.5
44..19 0.000 1297.2 457.8 0.1346 0.0000 0.0000 0.0 0.0
44..2 0.002 1297.2 457.8 0.1346 0.0002 0.0016 0.3 0.7
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
28 L 0.603 1.301 +- 0.248
31 S 0.616 1.308 +- 0.244
46 N 0.514 1.255 +- 0.256
70 L 0.677 1.336 +- 0.244
80 T 0.598 1.293 +- 0.265
83 V 0.570 1.276 +- 0.274
215 S 0.625 1.312 +- 0.245
256 D 0.501 1.232 +- 0.298
356 H 0.706 1.351 +- 0.239
359 I 0.664 1.332 +- 0.237
440 Q 0.621 1.293 +- 0.294
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.995
sum of density on p0-p1 = 1.000000
Time used: 12:14
Model 7: beta (10 categories)
TREE # 1: (1, (((((10, 11, 12, 13, 17, (21, 22, 28), 27, 4, 9), (15, 23)), (((14, 24, 25, 29), 26, 3, 5), (6, 7))), 16), ((18, 8), 20)), (19, 2)); MP score: 566
lnL(ntime: 43 np: 46): -5224.092517 +0.000000
30..1 30..31 31..32 32..33 33..34 34..35 35..10 35..11 35..12 35..13 35..17 35..36 36..21 36..22 36..28 35..27 35..4 35..9 34..37 37..15 37..23 33..38 38..39 39..40 40..14 40..24 40..25 40..29 39..26 39..3 39..5 38..41 41..6 41..7 32..16 31..42 42..43 43..18 43..8 42..20 30..44 44..19 44..2
0.003030 0.117624 0.036984 0.018577 0.033575 0.073439 0.000004 0.000004 0.001792 0.000004 0.001792 0.001791 0.000004 0.000004 0.000004 0.000004 0.000004 0.001790 0.046336 0.000004 0.000004 0.030542 0.147822 0.001778 0.000004 0.001776 0.000004 0.000004 0.007131 0.000004 0.000004 0.037703 0.073755 0.165627 0.187751 0.213622 0.001537 0.000004 0.000004 0.002019 0.013028 0.000004 0.001767 3.409033 0.149879 1.043233
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.222658
(1: 0.003030, (((((10: 0.000004, 11: 0.000004, 12: 0.001792, 13: 0.000004, 17: 0.001792, (21: 0.000004, 22: 0.000004, 28: 0.000004): 0.001791, 27: 0.000004, 4: 0.000004, 9: 0.001790): 0.073439, (15: 0.000004, 23: 0.000004): 0.046336): 0.033575, (((14: 0.000004, 24: 0.001776, 25: 0.000004, 29: 0.000004): 0.001778, 26: 0.007131, 3: 0.000004, 5: 0.000004): 0.147822, (6: 0.073755, 7: 0.165627): 0.037703): 0.030542): 0.018577, 16: 0.187751): 0.036984, ((18: 0.000004, 8: 0.000004): 0.001537, 20: 0.002019): 0.213622): 0.117624, (19: 0.000004, 2: 0.001767): 0.013028);
(C1: 0.003030, (((((C10: 0.000004, C11: 0.000004, C12: 0.001792, C13: 0.000004, C17: 0.001792, (C21: 0.000004, C22: 0.000004, C28: 0.000004): 0.001791, C27: 0.000004, C4: 0.000004, C9: 0.001790): 0.073439, (C15: 0.000004, C23: 0.000004): 0.046336): 0.033575, (((C14: 0.000004, C24: 0.001776, C25: 0.000004, C29: 0.000004): 0.001778, C26: 0.007131, C3: 0.000004, C5: 0.000004): 0.147822, (C6: 0.073755, C7: 0.165627): 0.037703): 0.030542): 0.018577, C16: 0.187751): 0.036984, ((C18: 0.000004, C8: 0.000004): 0.001537, C20: 0.002019): 0.213622): 0.117624, (C19: 0.000004, C2: 0.001767): 0.013028);
Detailed output identifying parameters
kappa (ts/tv) = 3.40903
Parameters in M7 (beta):
p = 0.14988 q = 1.04323
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00000 0.00000 0.00009 0.00085 0.00456 0.01741 0.05315 0.13856 0.32191 0.68958
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
30..1 0.003 1298.0 457.0 0.1226 0.0004 0.0029 0.5 1.3
30..31 0.118 1298.0 457.0 0.1226 0.0137 0.1117 17.8 51.0
31..32 0.037 1298.0 457.0 0.1226 0.0043 0.0351 5.6 16.0
32..33 0.019 1298.0 457.0 0.1226 0.0022 0.0176 2.8 8.1
33..34 0.034 1298.0 457.0 0.1226 0.0039 0.0319 5.1 14.6
34..35 0.073 1298.0 457.0 0.1226 0.0085 0.0697 11.1 31.9
35..10 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
35..11 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
35..12 0.002 1298.0 457.0 0.1226 0.0002 0.0017 0.3 0.8
35..13 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
35..17 0.002 1298.0 457.0 0.1226 0.0002 0.0017 0.3 0.8
35..36 0.002 1298.0 457.0 0.1226 0.0002 0.0017 0.3 0.8
36..21 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
36..22 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
36..28 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
35..27 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
35..4 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
35..9 0.002 1298.0 457.0 0.1226 0.0002 0.0017 0.3 0.8
34..37 0.046 1298.0 457.0 0.1226 0.0054 0.0440 7.0 20.1
37..15 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
37..23 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
33..38 0.031 1298.0 457.0 0.1226 0.0036 0.0290 4.6 13.3
38..39 0.148 1298.0 457.0 0.1226 0.0172 0.1404 22.3 64.1
39..40 0.002 1298.0 457.0 0.1226 0.0002 0.0017 0.3 0.8
40..14 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
40..24 0.002 1298.0 457.0 0.1226 0.0002 0.0017 0.3 0.8
40..25 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
40..29 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
39..26 0.007 1298.0 457.0 0.1226 0.0008 0.0068 1.1 3.1
39..3 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
39..5 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
38..41 0.038 1298.0 457.0 0.1226 0.0044 0.0358 5.7 16.4
41..6 0.074 1298.0 457.0 0.1226 0.0086 0.0700 11.1 32.0
41..7 0.166 1298.0 457.0 0.1226 0.0193 0.1573 25.0 71.9
32..16 0.188 1298.0 457.0 0.1226 0.0219 0.1783 28.4 81.5
31..42 0.214 1298.0 457.0 0.1226 0.0249 0.2028 32.3 92.7
42..43 0.002 1298.0 457.0 0.1226 0.0002 0.0015 0.2 0.7
43..18 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
43..8 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
42..20 0.002 1298.0 457.0 0.1226 0.0002 0.0019 0.3 0.9
30..44 0.013 1298.0 457.0 0.1226 0.0015 0.0124 2.0 5.7
44..19 0.000 1298.0 457.0 0.1226 0.0000 0.0000 0.0 0.0
44..2 0.002 1298.0 457.0 0.1226 0.0002 0.0017 0.3 0.8
Time used: 46:12
Model 8: beta&w>1 (11 categories)
TREE # 1: (1, (((((10, 11, 12, 13, 17, (21, 22, 28), 27, 4, 9), (15, 23)), (((14, 24, 25, 29), 26, 3, 5), (6, 7))), 16), ((18, 8), 20)), (19, 2)); MP score: 566
check convergence..
lnL(ntime: 43 np: 48): -5222.987307 +0.000000
30..1 30..31 31..32 32..33 33..34 34..35 35..10 35..11 35..12 35..13 35..17 35..36 36..21 36..22 36..28 35..27 35..4 35..9 34..37 37..15 37..23 33..38 38..39 39..40 40..14 40..24 40..25 40..29 39..26 39..3 39..5 38..41 41..6 41..7 32..16 31..42 42..43 43..18 43..8 42..20 30..44 44..19 44..2
0.003095 0.117842 0.036966 0.018640 0.033374 0.073571 0.000004 0.000004 0.001788 0.000004 0.001789 0.001788 0.000004 0.000004 0.000004 0.000004 0.000004 0.001787 0.046208 0.000004 0.000004 0.030758 0.148101 0.001773 0.000004 0.001772 0.000004 0.000004 0.007114 0.000004 0.000004 0.037530 0.073628 0.165820 0.188047 0.214175 0.001376 0.000004 0.000004 0.002179 0.012927 0.000004 0.001762 3.441296 0.918601 0.790959 13.333069 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.223882
(1: 0.003095, (((((10: 0.000004, 11: 0.000004, 12: 0.001788, 13: 0.000004, 17: 0.001789, (21: 0.000004, 22: 0.000004, 28: 0.000004): 0.001788, 27: 0.000004, 4: 0.000004, 9: 0.001787): 0.073571, (15: 0.000004, 23: 0.000004): 0.046208): 0.033374, (((14: 0.000004, 24: 0.001772, 25: 0.000004, 29: 0.000004): 0.001773, 26: 0.007114, 3: 0.000004, 5: 0.000004): 0.148101, (6: 0.073628, 7: 0.165820): 0.037530): 0.030758): 0.018640, 16: 0.188047): 0.036966, ((18: 0.000004, 8: 0.000004): 0.001376, 20: 0.002179): 0.214175): 0.117842, (19: 0.000004, 2: 0.001762): 0.012927);
(C1: 0.003095, (((((C10: 0.000004, C11: 0.000004, C12: 0.001788, C13: 0.000004, C17: 0.001789, (C21: 0.000004, C22: 0.000004, C28: 0.000004): 0.001788, C27: 0.000004, C4: 0.000004, C9: 0.001787): 0.073571, (C15: 0.000004, C23: 0.000004): 0.046208): 0.033374, (((C14: 0.000004, C24: 0.001772, C25: 0.000004, C29: 0.000004): 0.001773, C26: 0.007114, C3: 0.000004, C5: 0.000004): 0.148101, (C6: 0.073628, C7: 0.165820): 0.037530): 0.030758): 0.018640, C16: 0.188047): 0.036966, ((C18: 0.000004, C8: 0.000004): 0.001376, C20: 0.002179): 0.214175): 0.117842, (C19: 0.000004, C2: 0.001762): 0.012927);
Detailed output identifying parameters
kappa (ts/tv) = 3.44130
Parameters in M8 (beta&w>1):
p0 = 0.91860 p = 0.79096 q = 13.33307
(p1 = 0.08140) w = 1.00000
MLEs of dN/dS (w) for site classes (K=11)
p: 0.09186 0.09186 0.09186 0.09186 0.09186 0.09186 0.09186 0.09186 0.09186 0.09186 0.08140
w: 0.00158 0.00654 0.01304 0.02105 0.03084 0.04296 0.05841 0.07929 0.11089 0.17693 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
30..1 0.003 1297.5 457.5 0.1311 0.0004 0.0029 0.5 1.3
30..31 0.118 1297.5 457.5 0.1311 0.0144 0.1098 18.7 50.2
31..32 0.037 1297.5 457.5 0.1311 0.0045 0.0345 5.9 15.8
32..33 0.019 1297.5 457.5 0.1311 0.0023 0.0174 3.0 7.9
33..34 0.033 1297.5 457.5 0.1311 0.0041 0.0311 5.3 14.2
34..35 0.074 1297.5 457.5 0.1311 0.0090 0.0686 11.7 31.4
35..10 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
35..11 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
35..12 0.002 1297.5 457.5 0.1311 0.0002 0.0017 0.3 0.8
35..13 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
35..17 0.002 1297.5 457.5 0.1311 0.0002 0.0017 0.3 0.8
35..36 0.002 1297.5 457.5 0.1311 0.0002 0.0017 0.3 0.8
36..21 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
36..22 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
36..28 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
35..27 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
35..4 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
35..9 0.002 1297.5 457.5 0.1311 0.0002 0.0017 0.3 0.8
34..37 0.046 1297.5 457.5 0.1311 0.0056 0.0431 7.3 19.7
37..15 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
37..23 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
33..38 0.031 1297.5 457.5 0.1311 0.0038 0.0287 4.9 13.1
38..39 0.148 1297.5 457.5 0.1311 0.0181 0.1380 23.5 63.2
39..40 0.002 1297.5 457.5 0.1311 0.0002 0.0017 0.3 0.8
40..14 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
40..24 0.002 1297.5 457.5 0.1311 0.0002 0.0017 0.3 0.8
40..25 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
40..29 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
39..26 0.007 1297.5 457.5 0.1311 0.0009 0.0066 1.1 3.0
39..3 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
39..5 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
38..41 0.038 1297.5 457.5 0.1311 0.0046 0.0350 6.0 16.0
41..6 0.074 1297.5 457.5 0.1311 0.0090 0.0686 11.7 31.4
41..7 0.166 1297.5 457.5 0.1311 0.0203 0.1545 26.3 70.7
32..16 0.188 1297.5 457.5 0.1311 0.0230 0.1753 29.8 80.2
31..42 0.214 1297.5 457.5 0.1311 0.0262 0.1996 34.0 91.3
42..43 0.001 1297.5 457.5 0.1311 0.0002 0.0013 0.2 0.6
43..18 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
43..8 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
42..20 0.002 1297.5 457.5 0.1311 0.0003 0.0020 0.3 0.9
30..44 0.013 1297.5 457.5 0.1311 0.0016 0.0120 2.1 5.5
44..19 0.000 1297.5 457.5 0.1311 0.0000 0.0000 0.0 0.0
44..2 0.002 1297.5 457.5 0.1311 0.0002 0.0016 0.3 0.8
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
28 L 0.810 1.334 +- 0.354
31 S 0.846 1.370 +- 0.314
46 N 0.686 1.215 +- 0.436
70 L 0.860 1.376 +- 0.320
72 S 0.501 0.958 +- 0.573
80 T 0.769 1.286 +- 0.405
83 V 0.725 1.242 +- 0.436
147 T 0.520 0.981 +- 0.570
170 S 0.552 1.059 +- 0.512
193 Q 0.577 1.049 +- 0.553
215 S 0.835 1.357 +- 0.332
256 D 0.608 1.118 +- 0.496
350 M 0.545 1.052 +- 0.514
356 H 0.874 1.387 +- 0.309
359 I 0.892 1.412 +- 0.261
396 V 0.525 0.985 +- 0.570
412 I 0.515 1.022 +- 0.516
439 V 0.549 1.015 +- 0.563
440 Q 0.783 1.292 +- 0.412
455 A 0.562 1.031 +- 0.559
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000
p : 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.000 0.000 0.001 0.015 0.075 0.188 0.314 0.408
ws: 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
Time used: 1:32:55
Model 1: NearlyNeutral -5223.095397 Model 2: PositiveSelection -5223.095397 Model 7: beta -5224.092517 Model 8: beta&w>1 -5222.987307 Model 2 vs 1 0 Model 8 vs 7 2.210420
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
