--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -2254.20 -2284.39
2 -2254.44 -2283.29
--------------------------------------
TOTAL -2254.32 -2283.99
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.428245 0.003037 0.330522 0.546430 0.423754 1285.06 1343.30 1.000
r(A<->C){all} 0.070148 0.000640 0.022837 0.117575 0.067311 714.78 727.13 1.000
r(A<->G){all} 0.242251 0.001724 0.169512 0.330085 0.239678 692.48 697.98 1.000
r(A<->T){all} 0.042625 0.000197 0.016953 0.069873 0.041512 968.50 1005.40 1.000
r(C<->G){all} 0.048569 0.000409 0.012403 0.088058 0.046375 517.29 616.77 1.002
r(C<->T){all} 0.542965 0.002502 0.438468 0.636335 0.543434 658.99 666.38 1.000
r(G<->T){all} 0.053442 0.000220 0.027626 0.084168 0.051963 909.72 976.72 1.000
pi(A){all} 0.227564 0.000193 0.200206 0.254103 0.227729 968.50 986.16 1.000
pi(C){all} 0.163042 0.000137 0.140324 0.185937 0.163116 924.42 1117.97 1.000
pi(G){all} 0.227061 0.000201 0.200703 0.256843 0.226764 1072.65 1134.96 1.000
pi(T){all} 0.382333 0.000239 0.350956 0.411445 0.382505 692.76 924.00 1.000
alpha{1,2} 0.185869 0.002332 0.106164 0.282908 0.178591 1251.20 1270.72 1.004
alpha{3} 2.599369 1.418103 0.767666 4.987240 2.371193 1392.16 1414.86 1.000
pinvar{all} 0.584297 0.002784 0.481180 0.685157 0.587408 1195.20 1297.49 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -2166.869861
Model 2: PositiveSelection -2166.869862
Model 7: beta -2163.727808
Model 8: beta&w>1 -2163.728090
Model 2 vs 1 -.000002
Model 8 vs 7 -.000564
-- Starting log on Wed Nov 02 20:10:58 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.08 sec, SCORE=1000, Nseq=27, Len=288
C1 SKRTRVIKGTCCWILASTFLFCSIIAAFVKWTMFMYVTTHMLGVTLCALC
C2 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C3 SKRTRVIKGTCCWILASTFLVCSIISAFVKWTMFMYVTTHMLGVTLCALC
C4 SKRTRVVKGTCCWILASTFLVCSIISAFVKWTMFMYVTTHMLGVTLCALC
C5 SKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C6 SKRTRVVKGTCCWILASTFLVCSIISAFVKWTMFMYVTTHMLGVTLCALC
C7 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C8 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C9 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C10 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C11 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C12 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C13 SSRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C14 SKRTRVIKGTFCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C15 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C16 SKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C17 SKRTRVIKGTCCWILASTFLFCSIIAAFVKWTMFMYVTTHMLGVTLCALC
C18 SKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C19 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C20 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C21 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C22 SKRTRVIKGTFCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C23 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C24 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C25 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C26 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C27 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
*.****:*** *******:*.****:************************
C1 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C2 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C3 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C4 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C5 FVSFAMLLVKHKHLYLTMFIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C6 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C7 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C8 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C9 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C10 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C11 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C12 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C13 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C14 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C15 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C16 FVSFAMLLVKHKHLYLTMFIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C17 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C18 FVSFAMLLVKHKHLYLTMFIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C19 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C20 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C21 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C22 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C23 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C24 FVIFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVVGYKQSFRGLAYAWLS
C25 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C26 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C27 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
** *****:*********:**************** **************
C1 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C2 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C3 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
C4 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C5 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLV
C6 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLV
C7 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C8 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C9 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C10 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C11 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C12 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
C13 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRFVSLV
C14 HFVPAVDYTYMDEVLYGVVLLFAMVFVTMRSINHDVFSIMFLVGRLVSLV
C15 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C16 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLV
C17 HFVPAVDYTYMDEVLYGVVLLIAMVFVTMRSINHDVFSIMFLVGRLVSLV
C18 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLV
C19 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
C20 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C21 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C22 HFVPAVDYTYMDEVLYGVVLLFAMVFVTMRSINHDVFSIMFLVGRLVSLV
C23 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C24 YFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
C25 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
C26 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C27 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
:********************.**************** ******:****
C1 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C2 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C3 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C4 SMWYFGANLEEEVLLFLASLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C5 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C6 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C7 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C8 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C9 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C10 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C11 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C12 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C13 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C14 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLRTAKVIAKWLAVNVLYFT
C15 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C16 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C17 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C18 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C19 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C20 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C21 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C22 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C23 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C24 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C25 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C26 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C27 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
*****************:************** *****************
C1 DVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C2 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C3 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C4 DVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C5 DVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C6 DVPQIKLVLLGYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C7 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C8 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C9 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C10 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C11 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C12 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C13 DVPQIKLVLLGYLCIGYVCCCYWGVLSLLNSISRMPLGVYNYKISVQELR
C14 DVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C15 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPFGVYNYKISVQELR
C16 DVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C17 DVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C18 DVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C19 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C20 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C21 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C22 DVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C23 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C24 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C25 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C26 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C27 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
*:**:*****.*************:******* ***:*************
C1 YMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ
C2 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C3 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C4 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C5 YMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ
C6 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C7 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C8 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C9 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C10 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C11 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C12 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C13 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C14 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C15 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C16 YMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ
C17 YMNANGLRPPKNSFEALVLNFKLLGIGGVPVIEVSQIQ
C18 YMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ
C19 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C20 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C21 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C22 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C23 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C24 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C25 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C26 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C27 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
**********:******:********************
-- Starting log on Wed Nov 02 20:13:22 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.26 sec, SCORE=999, Nseq=27, Len=288
C1 SKRTRVIKGTCCWILASTFLFCSIIAAFVKWTMFMYVTTHMLGVTLCALC
C2 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C3 SKRTRVIKGTCCWILASTFLVCSIISAFVKWTMFMYVTTHMLGVTLCALC
C4 SKRTRVVKGTCCWILASTFLVCSIISAFVKWTMFMYVTTHMLGVTLCALC
C5 SKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C6 SKRTRVVKGTCCWILASTFLVCSIISAFVKWTMFMYVTTHMLGVTLCALC
C7 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C8 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C9 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C10 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C11 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C12 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C13 SSRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C14 SKRTRVIKGTFCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C15 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C16 SKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C17 SKRTRVIKGTCCWILASTFLFCSIIAAFVKWTMFMYVTTHMLGVTLCALC
C18 SKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C19 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C20 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C21 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C22 SKRTRVIKGTFCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C23 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C24 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C25 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C26 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C27 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
*.****:*** *******:*.****:************************
C1 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C2 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C3 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C4 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C5 FVSFAMLLVKHKHLYLTMFIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C6 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C7 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C8 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C9 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C10 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C11 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C12 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C13 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C14 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C15 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C16 FVSFAMLLVKHKHLYLTMFIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C17 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C18 FVSFAMLLVKHKHLYLTMFIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C19 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C20 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C21 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C22 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C23 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C24 FVIFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVVGYKQSFRGLAYAWLS
C25 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C26 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C27 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
** *****:*********:**************** **************
C1 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C2 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C3 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
C4 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C5 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLV
C6 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLV
C7 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C8 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C9 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C10 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C11 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C12 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
C13 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRFVSLV
C14 HFVPAVDYTYMDEVLYGVVLLFAMVFVTMRSINHDVFSIMFLVGRLVSLV
C15 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C16 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLV
C17 HFVPAVDYTYMDEVLYGVVLLIAMVFVTMRSINHDVFSIMFLVGRLVSLV
C18 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLV
C19 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
C20 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C21 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C22 HFVPAVDYTYMDEVLYGVVLLFAMVFVTMRSINHDVFSIMFLVGRLVSLV
C23 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C24 YFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
C25 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
C26 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C27 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
:********************.**************** ******:****
C1 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C2 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C3 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C4 SMWYFGANLEEEVLLFLASLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C5 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C6 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C7 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C8 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C9 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C10 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C11 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C12 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C13 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C14 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLRTAKVIAKWLAVNVLYFT
C15 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C16 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C17 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C18 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C19 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C20 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C21 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C22 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C23 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C24 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C25 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C26 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C27 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
*****************:************** *****************
C1 DVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C2 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C3 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C4 DVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C5 DVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C6 DVPQIKLVLLGYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C7 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C8 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C9 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C10 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C11 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C12 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C13 DVPQIKLVLLGYLCIGYVCCCYWGVLSLLNSISRMPLGVYNYKISVQELR
C14 DVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C15 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPFGVYNYKISVQELR
C16 DVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C17 DVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C18 DVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C19 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C20 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C21 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C22 DVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C23 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C24 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C25 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C26 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C27 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
*:**:*****.*************:******* ***:*************
C1 YMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ
C2 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C3 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C4 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C5 YMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ
C6 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C7 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C8 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C9 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C10 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C11 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C12 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C13 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C14 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C15 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C16 YMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ
C17 YMNANGLRPPKNSFEALVLNFKLLGIGGVPVIEVSQIQ
C18 YMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ
C19 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C20 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C21 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C22 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C23 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C24 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C25 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C26 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C27 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
**********:******:********************
-- Starting log on Wed Nov 02 21:47:32 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus.result/gapped_alignment/codeml,A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 27 taxa and 864 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C1
Taxon 2 -> C10
Taxon 3 -> C11
Taxon 4 -> C12
Taxon 5 -> C13
Taxon 6 -> C14
Taxon 7 -> C15
Taxon 8 -> C16
Taxon 9 -> C17
Taxon 10 -> C18
Taxon 11 -> C19
Taxon 12 -> C2
Taxon 13 -> C20
Taxon 14 -> C21
Taxon 15 -> C22
Taxon 16 -> C23
Taxon 17 -> C24
Taxon 18 -> C25
Taxon 19 -> C26
Taxon 20 -> C27
Taxon 21 -> C3
Taxon 22 -> C4
Taxon 23 -> C5
Taxon 24 -> C6
Taxon 25 -> C7
Taxon 26 -> C8
Taxon 27 -> C9
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1667425654
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 56466590
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 8451249573
Seed = 1723577065
Swapseed = 1667425654
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 32 unique site patterns
Division 2 has 13 unique site patterns
Division 3 has 85 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -4515.077861 -- 76.516819
Chain 2 -- -4635.427971 -- 76.516819
Chain 3 -- -4496.344867 -- 76.516819
Chain 4 -- -4591.903224 -- 76.516819
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -4230.352437 -- 76.516819
Chain 2 -- -4449.414403 -- 76.516819
Chain 3 -- -4693.799876 -- 76.516819
Chain 4 -- -4438.816816 -- 76.516819
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-4515.078] (-4635.428) (-4496.345) (-4591.903) * [-4230.352] (-4449.414) (-4693.800) (-4438.817)
1000 -- (-2374.033) (-2431.013) (-2464.442) [-2389.582] * (-2444.722) [-2398.756] (-2494.588) (-2444.623) -- 0:16:39
2000 -- [-2287.279] (-2346.495) (-2322.871) (-2303.499) * (-2342.321) (-2317.851) (-2362.280) [-2314.807] -- 0:16:38
3000 -- [-2276.769] (-2312.137) (-2302.791) (-2300.454) * (-2311.530) [-2307.420] (-2310.963) (-2286.247) -- 0:16:37
4000 -- (-2262.750) (-2300.212) (-2289.517) [-2263.023] * (-2289.652) (-2286.382) (-2305.271) [-2269.080] -- 0:12:27
5000 -- (-2266.093) [-2285.301] (-2270.244) (-2272.521) * (-2284.537) (-2273.758) (-2304.707) [-2265.142] -- 0:13:16
Average standard deviation of split frequencies: 0.076187
6000 -- [-2262.034] (-2284.359) (-2261.801) (-2293.517) * (-2268.765) [-2270.764] (-2296.231) (-2285.019) -- 0:13:48
7000 -- [-2265.169] (-2282.494) (-2272.413) (-2293.003) * [-2262.570] (-2287.292) (-2298.940) (-2259.722) -- 0:14:11
8000 -- [-2259.906] (-2290.941) (-2264.829) (-2269.597) * [-2263.030] (-2264.819) (-2286.525) (-2262.182) -- 0:14:28
9000 -- (-2271.211) (-2284.342) (-2265.711) [-2266.628] * [-2264.759] (-2260.187) (-2281.335) (-2266.534) -- 0:14:40
10000 -- [-2261.557] (-2268.561) (-2294.991) (-2269.253) * [-2266.210] (-2263.760) (-2287.276) (-2270.214) -- 0:14:51
Average standard deviation of split frequencies: 0.069974
11000 -- [-2270.244] (-2282.790) (-2280.976) (-2270.820) * [-2260.251] (-2274.914) (-2300.308) (-2280.494) -- 0:13:29
12000 -- (-2258.338) (-2274.021) [-2269.256] (-2284.018) * (-2285.118) (-2282.559) (-2264.804) [-2273.484] -- 0:13:43
13000 -- (-2255.399) (-2273.980) [-2253.281] (-2289.429) * (-2288.749) (-2274.459) (-2275.004) [-2265.245] -- 0:13:55
14000 -- (-2257.265) (-2281.190) [-2261.375] (-2289.491) * (-2284.409) (-2264.691) [-2262.458] (-2273.791) -- 0:14:05
15000 -- (-2271.383) (-2298.235) [-2267.498] (-2300.044) * (-2283.269) (-2269.093) [-2255.969] (-2273.787) -- 0:14:13
Average standard deviation of split frequencies: 0.070609
16000 -- (-2264.642) (-2274.746) [-2266.941] (-2277.368) * (-2280.662) (-2266.561) [-2265.892] (-2275.376) -- 0:14:21
17000 -- (-2285.183) (-2284.972) (-2264.599) [-2268.903] * (-2278.766) [-2263.112] (-2270.245) (-2280.056) -- 0:13:29
18000 -- (-2284.130) [-2260.201] (-2279.468) (-2266.086) * (-2282.209) (-2269.250) [-2258.227] (-2284.718) -- 0:13:38
19000 -- (-2267.537) (-2259.875) [-2268.803] (-2265.036) * (-2267.138) (-2275.444) [-2265.587] (-2278.997) -- 0:13:46
20000 -- [-2262.841] (-2261.158) (-2272.156) (-2279.784) * (-2258.274) (-2262.140) [-2263.518] (-2267.212) -- 0:13:53
Average standard deviation of split frequencies: 0.072798
21000 -- (-2264.785) [-2259.329] (-2278.568) (-2272.486) * (-2273.750) [-2261.305] (-2276.664) (-2284.008) -- 0:13:59
22000 -- (-2293.398) (-2293.098) [-2261.521] (-2266.365) * [-2267.283] (-2267.402) (-2276.623) (-2280.071) -- 0:14:04
23000 -- (-2279.491) [-2261.814] (-2263.614) (-2275.653) * (-2269.442) [-2275.745] (-2278.658) (-2271.245) -- 0:14:09
24000 -- (-2281.348) (-2273.716) (-2267.639) [-2260.932] * (-2266.120) (-2272.099) [-2266.067] (-2270.399) -- 0:13:33
25000 -- [-2266.011] (-2268.770) (-2280.966) (-2263.948) * (-2277.445) [-2269.237] (-2282.553) (-2267.405) -- 0:13:39
Average standard deviation of split frequencies: 0.054393
26000 -- [-2270.924] (-2275.610) (-2279.359) (-2287.297) * (-2272.793) (-2259.622) (-2275.672) [-2270.934] -- 0:13:44
27000 -- (-2262.579) (-2277.417) (-2291.589) [-2261.164] * (-2283.188) (-2259.093) [-2274.674] (-2274.939) -- 0:13:48
28000 -- (-2269.726) (-2285.732) (-2274.249) [-2256.070] * (-2282.178) [-2256.347] (-2279.573) (-2275.536) -- 0:13:53
29000 -- (-2266.141) (-2271.923) (-2292.791) [-2266.930] * (-2265.818) (-2268.970) [-2278.165] (-2270.442) -- 0:13:57
30000 -- [-2263.500] (-2289.794) (-2272.626) (-2280.974) * (-2271.279) [-2260.001] (-2287.317) (-2264.810) -- 0:13:28
Average standard deviation of split frequencies: 0.055158
31000 -- [-2264.393] (-2287.677) (-2269.431) (-2290.568) * (-2283.190) (-2274.960) (-2264.569) [-2262.400] -- 0:13:32
32000 -- (-2264.927) (-2291.538) (-2264.161) [-2268.839] * (-2256.241) (-2273.395) [-2259.129] (-2287.079) -- 0:13:36
33000 -- (-2274.533) [-2274.583] (-2265.255) (-2274.490) * (-2267.826) [-2270.072] (-2264.949) (-2300.606) -- 0:13:40
34000 -- (-2270.710) [-2258.599] (-2261.147) (-2267.822) * (-2281.307) (-2275.640) [-2270.714] (-2259.976) -- 0:13:43
35000 -- [-2262.613] (-2268.300) (-2289.075) (-2268.121) * (-2267.470) (-2270.760) [-2258.610] (-2281.678) -- 0:13:47
Average standard deviation of split frequencies: 0.047539
36000 -- (-2269.202) (-2270.720) (-2274.788) [-2270.590] * [-2254.559] (-2267.763) (-2268.605) (-2280.100) -- 0:13:23
37000 -- (-2275.484) (-2255.173) (-2267.680) [-2269.616] * (-2257.652) (-2274.856) (-2265.878) [-2261.448] -- 0:13:26
38000 -- (-2261.775) [-2260.530] (-2277.761) (-2275.968) * (-2272.204) (-2267.198) [-2260.903] (-2284.840) -- 0:13:30
39000 -- (-2281.208) (-2256.607) (-2275.266) [-2273.686] * (-2278.022) (-2263.652) [-2258.768] (-2287.685) -- 0:13:33
40000 -- [-2264.788] (-2282.702) (-2270.941) (-2271.468) * [-2268.049] (-2265.554) (-2284.143) (-2269.225) -- 0:13:36
Average standard deviation of split frequencies: 0.052609
41000 -- (-2267.611) [-2258.871] (-2283.954) (-2279.771) * (-2266.026) [-2266.323] (-2282.133) (-2277.836) -- 0:13:38
42000 -- (-2270.402) [-2281.100] (-2273.484) (-2268.624) * (-2260.514) (-2267.814) (-2276.928) [-2275.666] -- 0:13:18
43000 -- (-2263.477) (-2269.046) [-2274.620] (-2273.842) * [-2264.364] (-2274.653) (-2277.600) (-2274.900) -- 0:13:21
44000 -- (-2264.558) (-2280.979) [-2266.855] (-2288.178) * (-2281.048) (-2263.497) (-2292.121) [-2261.661] -- 0:13:23
45000 -- (-2266.217) [-2278.310] (-2283.766) (-2267.992) * [-2258.992] (-2273.850) (-2272.169) (-2257.859) -- 0:13:26
Average standard deviation of split frequencies: 0.049566
46000 -- (-2266.081) (-2271.352) [-2261.385] (-2273.375) * (-2260.393) [-2266.466] (-2273.627) (-2267.608) -- 0:13:28
47000 -- [-2259.068] (-2255.285) (-2270.966) (-2276.386) * [-2264.358] (-2276.067) (-2272.545) (-2273.166) -- 0:13:31
48000 -- (-2274.350) (-2282.959) [-2273.973] (-2274.471) * (-2278.753) [-2271.056] (-2287.367) (-2287.212) -- 0:13:33
49000 -- [-2263.956] (-2272.443) (-2272.633) (-2268.147) * [-2263.595] (-2268.938) (-2270.029) (-2274.247) -- 0:13:15
50000 -- (-2278.050) (-2268.291) [-2269.838] (-2300.872) * (-2269.266) (-2262.885) [-2258.765] (-2264.141) -- 0:13:18
Average standard deviation of split frequencies: 0.053845
51000 -- (-2288.185) [-2269.996] (-2272.650) (-2257.094) * (-2267.650) (-2266.147) (-2279.437) [-2260.858] -- 0:13:20
52000 -- (-2275.560) (-2271.372) [-2261.565] (-2277.648) * (-2268.103) (-2272.255) [-2255.452] (-2280.498) -- 0:13:22
53000 -- (-2273.559) [-2261.336] (-2275.111) (-2277.329) * (-2270.048) (-2282.270) [-2258.727] (-2270.734) -- 0:13:24
54000 -- (-2269.755) (-2283.662) (-2276.372) [-2259.407] * (-2279.385) (-2279.834) (-2278.775) [-2263.533] -- 0:13:25
55000 -- (-2274.771) (-2270.078) (-2268.964) [-2267.914] * (-2274.241) (-2294.826) [-2270.276] (-2266.471) -- 0:13:10
Average standard deviation of split frequencies: 0.050116
56000 -- (-2270.259) (-2279.286) [-2264.249] (-2275.176) * (-2274.721) (-2275.196) [-2270.050] (-2280.608) -- 0:13:12
57000 -- (-2267.725) (-2288.585) [-2260.568] (-2278.187) * [-2276.699] (-2272.353) (-2263.615) (-2282.851) -- 0:13:14
58000 -- [-2261.601] (-2284.046) (-2273.736) (-2270.508) * (-2261.546) (-2283.205) [-2259.059] (-2276.475) -- 0:13:15
59000 -- [-2273.920] (-2284.811) (-2281.584) (-2269.730) * (-2278.240) (-2272.420) [-2268.715] (-2276.115) -- 0:13:17
60000 -- (-2269.130) (-2281.829) [-2266.868] (-2265.965) * [-2275.559] (-2279.092) (-2278.238) (-2268.517) -- 0:13:03
Average standard deviation of split frequencies: 0.046622
61000 -- (-2267.242) (-2266.285) [-2259.114] (-2284.209) * (-2280.542) (-2263.595) (-2275.212) [-2271.042] -- 0:13:20
62000 -- (-2277.215) (-2276.583) (-2265.779) [-2273.394] * (-2295.323) [-2264.765] (-2272.290) (-2277.887) -- 0:13:06
63000 -- (-2272.021) (-2274.146) (-2273.066) [-2273.851] * (-2279.390) (-2285.369) [-2264.479] (-2263.926) -- 0:13:08
64000 -- [-2270.494] (-2267.862) (-2256.847) (-2264.201) * (-2278.414) [-2257.006] (-2282.258) (-2283.463) -- 0:13:09
65000 -- (-2264.676) (-2263.044) (-2264.758) [-2258.686] * (-2267.212) (-2263.426) (-2274.597) [-2279.270] -- 0:13:11
Average standard deviation of split frequencies: 0.046271
66000 -- (-2258.978) (-2277.442) (-2276.036) [-2278.532] * [-2266.978] (-2274.482) (-2279.735) (-2267.658) -- 0:13:12
67000 -- (-2275.386) (-2264.273) [-2269.267] (-2270.847) * [-2266.985] (-2270.042) (-2294.114) (-2273.423) -- 0:13:13
68000 -- (-2267.515) (-2256.924) (-2272.787) [-2254.226] * (-2269.501) [-2262.581] (-2277.357) (-2274.989) -- 0:13:14
69000 -- [-2265.556] (-2281.781) (-2260.973) (-2260.916) * (-2272.128) [-2281.366] (-2268.556) (-2256.138) -- 0:13:16
70000 -- (-2276.866) (-2270.298) (-2282.772) [-2270.035] * [-2268.011] (-2280.437) (-2283.816) (-2265.469) -- 0:13:03
Average standard deviation of split frequencies: 0.047757
71000 -- (-2282.946) (-2280.212) (-2276.530) [-2261.744] * (-2275.165) (-2273.235) (-2263.691) [-2271.051] -- 0:13:05
72000 -- (-2268.419) (-2285.798) (-2271.083) [-2273.507] * (-2273.989) (-2285.966) [-2279.928] (-2266.038) -- 0:13:06
73000 -- (-2270.492) (-2280.657) (-2278.185) [-2255.489] * [-2267.382] (-2277.714) (-2264.426) (-2266.687) -- 0:13:07
74000 -- (-2280.093) [-2265.601] (-2279.151) (-2292.145) * (-2272.076) [-2270.464] (-2265.527) (-2272.305) -- 0:13:08
75000 -- (-2273.191) [-2257.578] (-2267.879) (-2276.461) * [-2263.441] (-2284.689) (-2276.913) (-2277.746) -- 0:13:09
Average standard deviation of split frequencies: 0.044429
76000 -- (-2285.003) [-2270.387] (-2278.319) (-2277.084) * (-2264.785) [-2268.031] (-2267.160) (-2288.057) -- 0:12:58
77000 -- (-2276.128) (-2274.064) [-2268.519] (-2268.626) * (-2261.923) (-2291.366) [-2254.036] (-2273.267) -- 0:12:59
78000 -- (-2279.314) (-2268.868) [-2264.990] (-2275.140) * [-2261.755] (-2270.332) (-2272.616) (-2275.980) -- 0:13:00
79000 -- (-2277.320) (-2275.786) [-2267.456] (-2257.801) * (-2273.843) (-2270.733) [-2268.092] (-2271.377) -- 0:13:01
80000 -- (-2272.452) [-2272.510] (-2273.505) (-2274.220) * [-2271.641] (-2279.566) (-2280.845) (-2262.426) -- 0:13:02
Average standard deviation of split frequencies: 0.044664
81000 -- (-2286.672) (-2279.603) [-2262.994] (-2276.941) * (-2275.801) (-2288.045) (-2267.669) [-2274.065] -- 0:12:51
82000 -- (-2276.665) [-2258.649] (-2273.543) (-2270.291) * (-2261.345) (-2284.450) [-2271.916] (-2281.559) -- 0:12:52
83000 -- (-2271.410) (-2279.559) (-2274.370) [-2263.260] * (-2267.413) (-2263.156) [-2270.544] (-2295.028) -- 0:12:53
84000 -- [-2271.923] (-2281.033) (-2272.131) (-2259.835) * (-2263.132) (-2265.220) [-2268.193] (-2270.166) -- 0:12:54
85000 -- (-2274.976) (-2279.423) (-2263.162) [-2257.241] * (-2252.821) (-2292.205) [-2267.106] (-2272.785) -- 0:12:55
Average standard deviation of split frequencies: 0.039153
86000 -- (-2271.271) (-2271.720) (-2275.313) [-2259.272] * (-2260.189) (-2267.480) (-2273.920) [-2264.945] -- 0:12:55
87000 -- (-2277.398) [-2275.725] (-2271.987) (-2275.511) * [-2267.581] (-2270.269) (-2269.122) (-2281.968) -- 0:12:46
88000 -- (-2268.841) [-2274.731] (-2282.693) (-2281.166) * (-2267.801) (-2285.336) [-2269.241] (-2262.421) -- 0:12:46
89000 -- [-2263.820] (-2259.838) (-2276.426) (-2278.341) * (-2269.456) (-2296.100) (-2259.822) [-2268.424] -- 0:12:47
90000 -- (-2264.060) [-2257.323] (-2289.286) (-2269.140) * (-2273.217) [-2268.430] (-2275.055) (-2259.919) -- 0:12:48
Average standard deviation of split frequencies: 0.040109
91000 -- (-2268.237) (-2272.504) [-2279.499] (-2279.912) * (-2283.009) [-2264.484] (-2275.125) (-2262.673) -- 0:12:49
92000 -- (-2272.350) (-2266.826) [-2263.171] (-2287.395) * (-2269.016) (-2275.039) (-2289.814) [-2266.380] -- 0:12:39
93000 -- (-2274.719) (-2280.611) (-2263.591) [-2262.766] * (-2268.056) [-2269.612] (-2267.567) (-2281.502) -- 0:12:40
94000 -- (-2285.484) (-2276.626) [-2264.124] (-2264.395) * (-2274.294) (-2276.999) (-2269.633) [-2269.789] -- 0:12:41
95000 -- (-2273.726) (-2282.283) (-2267.277) [-2260.730] * (-2263.736) (-2269.896) (-2276.356) [-2265.222] -- 0:12:42
Average standard deviation of split frequencies: 0.039167
96000 -- (-2275.262) (-2280.441) [-2266.987] (-2262.568) * (-2279.539) [-2265.634] (-2279.996) (-2267.115) -- 0:12:42
97000 -- (-2291.234) (-2274.533) (-2285.385) [-2260.045] * (-2268.495) [-2267.334] (-2267.497) (-2270.449) -- 0:12:43
98000 -- [-2269.305] (-2286.098) (-2280.576) (-2264.228) * (-2269.603) (-2267.046) (-2273.481) [-2264.486] -- 0:12:34
99000 -- (-2270.280) (-2274.868) [-2265.253] (-2266.155) * (-2270.305) [-2256.120] (-2276.760) (-2257.138) -- 0:12:35
100000 -- (-2274.650) [-2265.460] (-2269.850) (-2280.860) * [-2275.895] (-2267.133) (-2282.371) (-2286.382) -- 0:12:36
Average standard deviation of split frequencies: 0.036794
101000 -- (-2267.647) (-2285.751) (-2269.255) [-2252.093] * [-2261.528] (-2261.271) (-2265.147) (-2278.726) -- 0:12:36
102000 -- (-2274.572) (-2273.633) [-2266.547] (-2268.594) * (-2261.777) (-2275.475) (-2266.511) [-2275.208] -- 0:12:37
103000 -- (-2289.257) (-2268.167) (-2278.526) [-2255.419] * (-2271.843) (-2266.668) [-2268.619] (-2255.269) -- 0:12:37
104000 -- (-2277.715) (-2276.993) [-2258.978] (-2270.268) * [-2281.357] (-2270.714) (-2269.285) (-2273.083) -- 0:12:29
105000 -- (-2295.427) (-2281.539) [-2263.069] (-2277.049) * [-2286.642] (-2273.764) (-2274.830) (-2283.658) -- 0:12:30
Average standard deviation of split frequencies: 0.035684
106000 -- (-2277.198) (-2271.861) (-2281.630) [-2269.832] * (-2278.098) (-2269.416) [-2265.241] (-2265.448) -- 0:12:30
107000 -- (-2270.016) (-2292.469) (-2304.125) [-2251.528] * (-2268.677) (-2266.930) (-2269.094) [-2253.915] -- 0:12:31
108000 -- (-2267.974) (-2268.946) (-2298.999) [-2267.532] * [-2266.393] (-2268.677) (-2273.696) (-2268.063) -- 0:12:31
109000 -- [-2262.030] (-2272.031) (-2288.905) (-2274.068) * (-2266.368) (-2288.486) (-2268.650) [-2266.212] -- 0:12:32
110000 -- (-2276.789) (-2267.971) (-2265.547) [-2268.240] * [-2262.720] (-2263.296) (-2274.996) (-2278.467) -- 0:12:24
Average standard deviation of split frequencies: 0.033766
111000 -- (-2285.878) [-2259.177] (-2271.735) (-2282.862) * [-2264.654] (-2263.719) (-2284.109) (-2271.034) -- 0:12:24
112000 -- (-2269.855) [-2260.793] (-2278.432) (-2276.772) * (-2262.474) [-2273.156] (-2285.772) (-2265.503) -- 0:12:25
113000 -- (-2281.063) [-2257.875] (-2269.967) (-2283.820) * (-2269.434) (-2268.176) (-2280.495) [-2264.382] -- 0:12:25
114000 -- [-2276.160] (-2272.868) (-2276.418) (-2303.130) * (-2273.361) [-2259.021] (-2283.076) (-2276.132) -- 0:12:26
115000 -- (-2268.528) (-2275.704) (-2267.524) [-2270.909] * [-2272.087] (-2271.744) (-2272.526) (-2291.003) -- 0:12:26
Average standard deviation of split frequencies: 0.034282
116000 -- (-2263.636) [-2261.675] (-2283.919) (-2280.506) * (-2277.184) (-2276.600) (-2267.374) [-2268.533] -- 0:12:26
117000 -- (-2271.492) [-2257.951] (-2274.968) (-2280.152) * (-2287.297) (-2258.847) [-2266.436] (-2277.541) -- 0:12:19
118000 -- [-2259.711] (-2272.045) (-2265.104) (-2285.111) * (-2277.816) [-2265.109] (-2266.689) (-2283.601) -- 0:12:19
119000 -- (-2263.384) (-2283.478) [-2265.068] (-2281.379) * (-2266.303) (-2278.232) (-2270.993) [-2259.489] -- 0:12:20
120000 -- [-2253.241] (-2259.976) (-2272.952) (-2278.946) * [-2268.245] (-2270.233) (-2295.332) (-2263.846) -- 0:12:20
Average standard deviation of split frequencies: 0.036896
121000 -- (-2266.052) [-2257.954] (-2273.761) (-2275.527) * (-2275.836) (-2266.684) (-2271.144) [-2264.863] -- 0:12:20
122000 -- (-2256.094) [-2256.525] (-2263.268) (-2286.127) * (-2287.127) (-2274.758) [-2262.226] (-2262.516) -- 0:12:21
123000 -- (-2262.975) (-2260.473) [-2272.724] (-2269.223) * (-2295.812) (-2275.645) [-2265.128] (-2258.775) -- 0:12:21
124000 -- (-2279.246) [-2260.766] (-2263.170) (-2275.764) * (-2276.527) (-2284.316) [-2269.467] (-2276.665) -- 0:12:14
125000 -- (-2278.551) (-2271.829) (-2277.001) [-2257.285] * (-2284.106) (-2274.157) [-2260.908] (-2272.838) -- 0:12:15
Average standard deviation of split frequencies: 0.034151
126000 -- (-2276.089) (-2273.258) (-2283.130) [-2261.704] * (-2279.866) [-2271.979] (-2276.299) (-2277.698) -- 0:12:15
127000 -- (-2291.359) [-2261.596] (-2282.459) (-2273.221) * (-2286.964) [-2265.584] (-2261.460) (-2268.356) -- 0:12:15
128000 -- (-2297.587) (-2278.312) [-2259.261] (-2283.684) * (-2268.154) [-2266.673] (-2263.669) (-2268.254) -- 0:12:15
129000 -- (-2273.640) [-2276.587] (-2272.268) (-2285.253) * (-2254.110) [-2264.149] (-2270.135) (-2263.739) -- 0:12:15
130000 -- (-2286.764) (-2274.032) [-2263.656] (-2281.043) * (-2281.207) (-2260.694) (-2280.328) [-2263.551] -- 0:12:16
Average standard deviation of split frequencies: 0.030191
131000 -- (-2284.048) (-2265.121) (-2265.775) [-2276.733] * (-2286.118) (-2273.233) [-2265.202] (-2283.296) -- 0:12:16
132000 -- (-2275.223) (-2271.831) (-2267.582) [-2272.548] * (-2268.603) [-2268.702] (-2274.485) (-2273.602) -- 0:12:09
133000 -- (-2266.537) (-2269.692) (-2278.426) [-2264.761] * (-2278.971) (-2274.366) (-2267.654) [-2273.676] -- 0:12:10
134000 -- (-2266.060) [-2270.939] (-2275.925) (-2256.105) * (-2281.624) [-2262.040] (-2269.555) (-2287.217) -- 0:12:10
135000 -- (-2285.943) (-2264.487) (-2271.853) [-2267.091] * (-2274.449) [-2260.071] (-2263.024) (-2292.606) -- 0:12:10
Average standard deviation of split frequencies: 0.025540
136000 -- [-2274.806] (-2269.671) (-2268.709) (-2275.896) * (-2286.533) (-2272.393) (-2269.368) [-2267.288] -- 0:12:10
137000 -- (-2263.752) (-2272.975) [-2264.183] (-2274.210) * (-2280.255) (-2267.369) [-2283.816] (-2269.405) -- 0:12:10
138000 -- [-2259.815] (-2276.748) (-2275.012) (-2268.423) * (-2262.203) (-2269.871) [-2264.465] (-2273.841) -- 0:12:04
139000 -- (-2262.102) [-2260.931] (-2266.921) (-2268.157) * [-2263.122] (-2265.985) (-2286.825) (-2276.892) -- 0:12:04
140000 -- [-2281.488] (-2279.906) (-2285.307) (-2281.679) * (-2277.938) [-2269.475] (-2272.035) (-2267.580) -- 0:12:04
Average standard deviation of split frequencies: 0.027239
141000 -- [-2266.148] (-2269.154) (-2280.244) (-2275.172) * [-2267.720] (-2271.601) (-2274.558) (-2277.714) -- 0:12:04
142000 -- (-2265.442) (-2268.995) (-2270.301) [-2279.091] * (-2267.168) (-2267.398) (-2280.363) [-2268.169] -- 0:12:05
143000 -- (-2266.338) (-2278.751) [-2261.329] (-2274.728) * (-2279.405) (-2276.451) (-2286.653) [-2265.460] -- 0:12:05
144000 -- (-2269.389) (-2260.530) [-2272.383] (-2270.497) * (-2280.770) (-2263.931) [-2255.266] (-2256.408) -- 0:12:05
145000 -- [-2265.964] (-2265.408) (-2271.384) (-2269.162) * (-2271.185) [-2258.692] (-2271.524) (-2268.455) -- 0:11:59
Average standard deviation of split frequencies: 0.026327
146000 -- (-2283.554) (-2271.575) [-2264.129] (-2282.047) * (-2275.057) (-2283.569) [-2263.217] (-2271.868) -- 0:11:59
147000 -- (-2291.600) (-2274.735) (-2257.259) [-2273.477] * [-2256.404] (-2278.240) (-2290.180) (-2274.770) -- 0:11:59
148000 -- (-2282.696) (-2264.888) [-2271.373] (-2288.664) * [-2265.953] (-2276.268) (-2268.247) (-2277.237) -- 0:11:59
149000 -- [-2263.127] (-2278.025) (-2278.016) (-2275.948) * (-2289.387) [-2278.066] (-2271.485) (-2261.429) -- 0:11:59
150000 -- (-2277.992) [-2282.336] (-2277.367) (-2269.894) * (-2275.883) (-2283.903) (-2296.110) [-2265.469] -- 0:11:59
Average standard deviation of split frequencies: 0.024870
151000 -- (-2268.406) (-2277.785) (-2275.071) [-2261.786] * (-2267.113) (-2274.120) (-2263.682) [-2262.868] -- 0:11:54
152000 -- [-2262.682] (-2270.914) (-2282.559) (-2268.424) * (-2267.088) (-2256.568) [-2281.036] (-2268.718) -- 0:11:54
153000 -- [-2266.729] (-2275.697) (-2279.737) (-2264.970) * (-2282.298) (-2286.505) [-2274.101] (-2275.270) -- 0:11:54
154000 -- (-2263.150) [-2275.405] (-2266.029) (-2287.208) * (-2276.317) (-2284.793) (-2287.615) [-2263.792] -- 0:11:54
155000 -- (-2273.284) [-2275.058] (-2286.969) (-2265.574) * (-2278.142) (-2271.437) [-2257.803] (-2261.556) -- 0:11:54
Average standard deviation of split frequencies: 0.025027
156000 -- (-2270.325) (-2283.415) (-2291.748) [-2277.009] * (-2276.086) [-2271.918] (-2288.239) (-2278.096) -- 0:11:54
157000 -- (-2280.203) [-2265.794] (-2260.308) (-2279.342) * (-2289.634) [-2271.749] (-2298.221) (-2269.619) -- 0:11:54
158000 -- [-2265.724] (-2270.935) (-2263.133) (-2289.181) * (-2264.317) [-2264.783] (-2285.620) (-2260.707) -- 0:11:48
159000 -- (-2273.553) (-2284.927) [-2280.203] (-2283.159) * (-2272.672) [-2272.095] (-2280.252) (-2265.918) -- 0:11:48
160000 -- [-2263.972] (-2264.510) (-2286.895) (-2270.963) * (-2271.140) (-2270.233) (-2271.269) [-2265.624] -- 0:11:48
Average standard deviation of split frequencies: 0.027309
161000 -- (-2286.468) (-2262.826) (-2274.518) [-2256.917] * (-2275.078) (-2273.575) (-2268.256) [-2271.270] -- 0:11:48
162000 -- (-2274.420) (-2266.989) (-2269.237) [-2264.545] * (-2290.860) (-2263.662) (-2285.044) [-2266.527] -- 0:11:48
163000 -- (-2269.454) (-2277.515) [-2267.484] (-2269.959) * (-2273.741) (-2276.070) [-2275.640] (-2265.721) -- 0:11:48
164000 -- (-2268.545) (-2282.483) (-2266.501) [-2274.787] * (-2275.307) [-2258.371] (-2272.199) (-2274.033) -- 0:11:43
165000 -- [-2268.175] (-2258.405) (-2265.069) (-2289.174) * (-2284.965) (-2266.017) [-2265.431] (-2271.697) -- 0:11:43
Average standard deviation of split frequencies: 0.025121
166000 -- (-2267.721) (-2270.021) (-2280.304) [-2268.107] * (-2284.316) (-2266.336) [-2267.372] (-2274.952) -- 0:11:43
167000 -- (-2271.780) (-2271.492) (-2291.010) [-2253.723] * [-2261.350] (-2274.599) (-2285.700) (-2286.518) -- 0:11:43
168000 -- (-2264.049) (-2260.409) (-2274.303) [-2267.182] * (-2272.998) [-2267.994] (-2278.430) (-2279.706) -- 0:11:43
169000 -- (-2282.227) [-2259.839] (-2264.158) (-2268.956) * [-2268.884] (-2275.757) (-2275.191) (-2268.495) -- 0:11:43
170000 -- (-2261.047) [-2261.580] (-2276.423) (-2270.479) * [-2267.135] (-2274.907) (-2274.930) (-2283.398) -- 0:11:38
Average standard deviation of split frequencies: 0.025851
171000 -- (-2265.467) [-2260.049] (-2275.050) (-2284.022) * (-2271.038) (-2279.087) (-2268.174) [-2259.245] -- 0:11:38
172000 -- (-2272.633) [-2278.613] (-2271.365) (-2277.162) * (-2264.046) (-2283.913) (-2270.405) [-2265.305] -- 0:11:38
173000 -- (-2266.858) (-2273.060) (-2266.337) [-2264.431] * (-2273.546) (-2277.360) [-2266.488] (-2281.745) -- 0:11:37
174000 -- (-2282.265) (-2278.069) (-2282.830) [-2264.856] * (-2291.575) [-2267.953] (-2265.106) (-2283.006) -- 0:11:37
175000 -- (-2267.808) (-2279.934) [-2281.691] (-2276.344) * (-2273.406) (-2277.147) [-2271.005] (-2268.714) -- 0:11:33
Average standard deviation of split frequencies: 0.026510
176000 -- (-2276.605) (-2281.165) (-2285.057) [-2271.588] * (-2282.600) (-2275.371) [-2275.397] (-2268.829) -- 0:11:32
177000 -- (-2274.529) (-2269.405) (-2273.124) [-2258.653] * (-2283.969) [-2267.170] (-2270.423) (-2273.421) -- 0:11:32
178000 -- [-2269.429] (-2287.571) (-2270.784) (-2281.535) * (-2280.496) (-2269.983) [-2274.431] (-2261.112) -- 0:11:32
179000 -- (-2268.347) [-2277.346] (-2277.557) (-2274.259) * (-2278.350) (-2262.144) (-2279.199) [-2266.731] -- 0:11:32
180000 -- (-2278.775) (-2277.007) [-2260.059] (-2262.651) * (-2267.616) [-2261.072] (-2275.658) (-2290.365) -- 0:11:32
Average standard deviation of split frequencies: 0.025310
181000 -- (-2279.903) (-2270.702) [-2256.608] (-2280.413) * (-2275.293) (-2275.000) [-2273.449] (-2275.354) -- 0:11:27
182000 -- (-2276.199) [-2268.421] (-2276.215) (-2290.322) * [-2272.976] (-2276.771) (-2284.081) (-2264.256) -- 0:11:27
183000 -- [-2265.006] (-2272.788) (-2272.888) (-2294.034) * (-2275.861) (-2270.520) (-2280.203) [-2264.129] -- 0:11:27
184000 -- (-2255.109) (-2276.219) [-2269.378] (-2283.907) * (-2260.246) [-2267.856] (-2271.476) (-2281.933) -- 0:11:27
185000 -- [-2267.636] (-2281.598) (-2281.542) (-2272.815) * (-2259.447) (-2261.908) [-2265.853] (-2272.616) -- 0:11:27
Average standard deviation of split frequencies: 0.023634
186000 -- (-2276.310) (-2266.779) [-2268.595] (-2273.077) * [-2260.051] (-2264.784) (-2281.686) (-2264.995) -- 0:11:27
187000 -- (-2265.995) (-2277.497) (-2276.274) [-2263.556] * [-2268.155] (-2266.208) (-2291.318) (-2288.710) -- 0:11:26
188000 -- [-2257.783] (-2282.239) (-2283.018) (-2268.908) * [-2259.675] (-2289.189) (-2278.445) (-2276.253) -- 0:11:22
189000 -- (-2257.116) (-2270.464) (-2280.444) [-2260.628] * (-2271.750) (-2284.308) [-2256.230] (-2258.701) -- 0:11:22
190000 -- [-2262.494] (-2262.470) (-2266.533) (-2274.826) * [-2272.185] (-2277.088) (-2274.706) (-2267.716) -- 0:11:22
Average standard deviation of split frequencies: 0.022499
191000 -- [-2260.341] (-2267.730) (-2263.854) (-2277.109) * (-2294.213) (-2262.630) (-2300.917) [-2268.149] -- 0:11:21
192000 -- (-2262.208) (-2269.527) (-2271.809) [-2266.172] * (-2276.929) (-2269.240) (-2287.857) [-2259.370] -- 0:11:21
193000 -- [-2260.860] (-2264.741) (-2284.436) (-2275.182) * (-2276.968) [-2259.872] (-2261.218) (-2273.088) -- 0:11:17
194000 -- (-2265.966) (-2284.447) [-2266.242] (-2280.996) * (-2282.595) (-2265.022) (-2282.447) [-2266.744] -- 0:11:17
195000 -- (-2283.143) (-2291.000) [-2263.722] (-2269.296) * (-2265.657) (-2275.375) [-2265.703] (-2269.321) -- 0:11:17
Average standard deviation of split frequencies: 0.023250
196000 -- [-2268.749] (-2276.954) (-2260.443) (-2277.554) * (-2274.098) (-2264.521) [-2257.423] (-2278.842) -- 0:11:16
197000 -- [-2264.245] (-2276.523) (-2282.834) (-2279.740) * (-2264.061) (-2265.638) [-2275.505] (-2277.773) -- 0:11:16
198000 -- (-2263.777) (-2278.129) [-2265.754] (-2273.751) * (-2274.019) (-2273.882) [-2272.305] (-2266.907) -- 0:11:16
199000 -- (-2273.749) [-2268.750] (-2263.945) (-2284.208) * (-2274.796) (-2273.513) (-2272.670) [-2269.251] -- 0:11:16
200000 -- [-2263.657] (-2276.794) (-2269.483) (-2263.954) * [-2270.229] (-2269.229) (-2273.244) (-2278.720) -- 0:11:16
Average standard deviation of split frequencies: 0.023306
201000 -- [-2263.857] (-2270.051) (-2268.000) (-2269.184) * (-2267.671) (-2276.923) (-2268.225) [-2261.578] -- 0:11:11
202000 -- (-2286.879) (-2272.724) (-2270.715) [-2265.270] * [-2271.201] (-2262.105) (-2284.720) (-2281.577) -- 0:11:11
203000 -- (-2279.513) (-2266.796) [-2266.425] (-2271.870) * (-2284.169) (-2269.660) [-2276.636] (-2275.690) -- 0:11:11
204000 -- (-2276.619) (-2283.674) (-2274.416) [-2261.134] * (-2265.565) (-2273.165) (-2270.318) [-2264.614] -- 0:11:11
205000 -- (-2288.149) (-2284.850) (-2286.771) [-2267.007] * (-2276.270) (-2266.147) (-2280.405) [-2266.154] -- 0:11:10
Average standard deviation of split frequencies: 0.024148
206000 -- [-2270.558] (-2264.532) (-2267.175) (-2292.133) * (-2266.467) (-2295.676) (-2288.123) [-2259.275] -- 0:11:10
207000 -- (-2265.327) (-2276.139) (-2268.744) [-2271.785] * (-2279.334) (-2270.860) (-2281.620) [-2254.882] -- 0:11:06
208000 -- (-2270.327) (-2269.887) [-2256.217] (-2265.135) * [-2264.389] (-2283.222) (-2288.623) (-2255.854) -- 0:11:06
209000 -- (-2265.279) (-2274.540) [-2265.491] (-2257.925) * [-2261.480] (-2282.451) (-2279.843) (-2275.013) -- 0:11:06
210000 -- (-2271.390) (-2277.925) (-2264.025) [-2248.511] * [-2274.240] (-2287.804) (-2273.943) (-2273.020) -- 0:11:05
Average standard deviation of split frequencies: 0.023790
211000 -- (-2266.979) (-2276.209) (-2270.754) [-2263.508] * (-2278.931) (-2266.648) [-2268.545] (-2273.341) -- 0:11:05
212000 -- (-2271.349) (-2271.270) [-2266.752] (-2253.124) * (-2263.346) (-2284.152) (-2267.394) [-2270.642] -- 0:11:01
213000 -- (-2284.838) (-2258.327) (-2279.996) [-2271.742] * (-2265.402) (-2283.980) [-2270.499] (-2280.616) -- 0:11:01
214000 -- (-2266.696) (-2263.010) (-2272.517) [-2265.824] * (-2263.812) (-2278.325) [-2260.376] (-2274.206) -- 0:11:01
215000 -- [-2268.387] (-2273.723) (-2290.412) (-2267.254) * (-2277.928) (-2272.778) [-2266.726] (-2273.586) -- 0:11:00
Average standard deviation of split frequencies: 0.024581
216000 -- (-2272.218) [-2264.232] (-2265.926) (-2270.779) * [-2271.066] (-2265.550) (-2278.269) (-2270.043) -- 0:11:00
217000 -- (-2283.000) (-2266.687) [-2261.932] (-2274.426) * (-2266.594) (-2264.731) [-2272.243] (-2290.257) -- 0:11:00
218000 -- (-2283.450) [-2280.145] (-2272.003) (-2282.569) * (-2282.446) (-2275.177) (-2273.869) [-2270.926] -- 0:11:00
219000 -- [-2267.265] (-2274.002) (-2271.283) (-2262.543) * (-2274.957) (-2273.869) [-2271.741] (-2286.809) -- 0:10:56
220000 -- [-2257.758] (-2284.189) (-2274.122) (-2273.867) * (-2269.021) [-2274.482] (-2263.182) (-2269.510) -- 0:10:55
Average standard deviation of split frequencies: 0.023274
221000 -- (-2274.930) (-2281.084) [-2269.177] (-2278.239) * (-2260.902) (-2269.836) [-2265.301] (-2270.305) -- 0:10:55
222000 -- [-2261.003] (-2280.192) (-2266.460) (-2269.892) * (-2267.436) [-2262.212] (-2268.538) (-2285.707) -- 0:10:55
223000 -- (-2252.906) (-2293.507) [-2274.582] (-2282.854) * [-2259.089] (-2259.369) (-2273.843) (-2257.951) -- 0:10:55
224000 -- [-2272.659] (-2279.106) (-2277.616) (-2277.423) * [-2280.585] (-2258.792) (-2269.060) (-2264.959) -- 0:10:54
225000 -- [-2266.846] (-2274.410) (-2278.378) (-2274.397) * (-2266.783) (-2263.368) (-2295.559) [-2264.833] -- 0:10:54
Average standard deviation of split frequencies: 0.021447
226000 -- (-2284.074) (-2263.871) (-2284.063) [-2271.428] * [-2255.894] (-2280.704) (-2271.387) (-2278.336) -- 0:10:50
227000 -- [-2261.995] (-2286.356) (-2291.863) (-2262.489) * (-2262.024) (-2275.630) [-2272.715] (-2268.073) -- 0:10:50
228000 -- (-2271.055) (-2268.539) (-2277.355) [-2280.563] * [-2267.095] (-2266.554) (-2270.409) (-2268.801) -- 0:10:50
229000 -- (-2261.919) [-2264.636] (-2280.693) (-2284.450) * (-2283.232) [-2264.029] (-2280.255) (-2270.236) -- 0:10:49
230000 -- (-2281.075) (-2264.091) (-2270.619) [-2275.802] * (-2278.822) (-2273.775) (-2273.341) [-2266.165] -- 0:10:49
Average standard deviation of split frequencies: 0.021694
231000 -- (-2282.161) (-2280.283) (-2274.952) [-2272.113] * (-2270.896) [-2257.558] (-2285.781) (-2260.615) -- 0:10:49
232000 -- (-2270.845) (-2293.460) [-2266.013] (-2270.727) * (-2277.512) [-2265.407] (-2259.256) (-2271.300) -- 0:10:45
233000 -- [-2267.813] (-2279.783) (-2271.294) (-2272.337) * [-2273.596] (-2277.428) (-2266.140) (-2280.732) -- 0:10:45
234000 -- (-2257.546) [-2282.454] (-2275.968) (-2288.349) * (-2275.612) (-2285.728) [-2275.300] (-2254.237) -- 0:10:44
235000 -- [-2262.151] (-2282.811) (-2273.730) (-2287.354) * [-2266.418] (-2274.922) (-2305.138) (-2271.716) -- 0:10:44
Average standard deviation of split frequencies: 0.022971
236000 -- (-2283.626) (-2280.622) [-2257.776] (-2280.705) * [-2264.367] (-2271.343) (-2272.350) (-2267.020) -- 0:10:44
237000 -- [-2269.230] (-2293.305) (-2259.935) (-2279.003) * (-2272.408) (-2280.541) (-2264.812) [-2266.850] -- 0:10:43
238000 -- (-2276.924) (-2285.898) (-2274.549) [-2267.900] * (-2270.906) [-2262.454] (-2269.485) (-2274.514) -- 0:10:43
239000 -- (-2266.992) [-2263.953] (-2268.397) (-2271.169) * (-2280.704) [-2268.181] (-2268.649) (-2277.667) -- 0:10:43
240000 -- (-2297.223) (-2263.000) [-2262.733] (-2262.132) * (-2271.900) (-2269.931) (-2259.855) [-2255.974] -- 0:10:42
Average standard deviation of split frequencies: 0.023402
241000 -- (-2268.835) [-2264.833] (-2262.186) (-2279.792) * (-2268.525) (-2285.879) [-2264.047] (-2262.305) -- 0:10:39
242000 -- (-2273.548) (-2266.914) (-2268.853) [-2265.667] * [-2261.026] (-2272.209) (-2274.847) (-2278.405) -- 0:10:38
243000 -- (-2254.724) (-2280.258) (-2275.474) [-2276.858] * (-2265.710) [-2270.981] (-2284.323) (-2283.771) -- 0:10:38
244000 -- (-2274.272) (-2269.699) [-2259.679] (-2272.843) * (-2284.277) [-2257.468] (-2282.502) (-2275.818) -- 0:10:38
245000 -- (-2272.691) (-2282.982) [-2269.099] (-2264.166) * (-2274.450) [-2261.109] (-2274.295) (-2262.437) -- 0:10:37
Average standard deviation of split frequencies: 0.022794
246000 -- (-2264.131) (-2285.489) [-2256.671] (-2274.673) * (-2270.861) [-2255.724] (-2276.482) (-2278.053) -- 0:10:37
247000 -- [-2260.008] (-2258.651) (-2287.016) (-2274.011) * [-2260.626] (-2288.701) (-2287.869) (-2285.265) -- 0:10:34
248000 -- [-2268.921] (-2264.067) (-2277.363) (-2271.983) * [-2271.996] (-2270.964) (-2277.055) (-2268.315) -- 0:10:33
249000 -- [-2271.370] (-2286.682) (-2275.000) (-2271.491) * (-2279.718) (-2269.945) (-2267.358) [-2254.902] -- 0:10:33
250000 -- [-2271.202] (-2279.162) (-2287.129) (-2274.517) * (-2269.575) [-2268.887] (-2284.792) (-2267.811) -- 0:10:33
Average standard deviation of split frequencies: 0.020640
251000 -- [-2269.548] (-2286.161) (-2272.053) (-2294.342) * (-2273.133) (-2300.858) (-2264.697) [-2262.824] -- 0:10:32
252000 -- (-2278.657) (-2263.788) [-2268.435] (-2286.876) * (-2270.198) (-2286.091) [-2284.800] (-2272.593) -- 0:10:32
253000 -- [-2272.454] (-2269.320) (-2276.903) (-2265.259) * (-2260.724) (-2280.647) (-2265.205) [-2270.583] -- 0:10:28
254000 -- (-2282.469) (-2276.383) [-2261.113] (-2271.580) * (-2274.932) (-2261.969) [-2270.790] (-2280.411) -- 0:10:28
255000 -- (-2261.689) [-2263.631] (-2273.777) (-2279.200) * (-2263.241) [-2258.834] (-2287.595) (-2272.075) -- 0:10:28
Average standard deviation of split frequencies: 0.019887
256000 -- (-2273.589) (-2259.147) (-2264.737) [-2261.282] * (-2275.264) [-2270.031] (-2264.320) (-2266.495) -- 0:10:27
257000 -- (-2263.656) (-2274.120) [-2261.520] (-2277.816) * (-2268.123) (-2272.174) [-2268.713] (-2270.826) -- 0:10:27
258000 -- [-2259.616] (-2274.736) (-2267.945) (-2270.229) * (-2259.277) [-2257.648] (-2263.008) (-2271.636) -- 0:10:26
259000 -- [-2255.854] (-2264.772) (-2270.386) (-2277.634) * (-2270.961) (-2271.941) (-2267.226) [-2265.145] -- 0:10:23
260000 -- [-2267.491] (-2267.708) (-2275.146) (-2277.622) * (-2275.172) [-2274.703] (-2279.164) (-2277.856) -- 0:10:23
Average standard deviation of split frequencies: 0.017952
261000 -- [-2271.804] (-2272.909) (-2268.429) (-2263.063) * (-2267.297) (-2269.468) (-2275.071) [-2270.237] -- 0:10:22
262000 -- (-2274.296) (-2267.258) [-2271.508] (-2257.877) * (-2284.013) (-2280.723) (-2268.690) [-2264.333] -- 0:10:22
263000 -- (-2275.901) [-2254.118] (-2276.832) (-2273.013) * [-2265.998] (-2269.963) (-2269.837) (-2286.801) -- 0:10:22
264000 -- [-2260.680] (-2290.347) (-2292.196) (-2272.271) * (-2281.199) [-2255.909] (-2266.959) (-2272.245) -- 0:10:21
265000 -- [-2261.874] (-2278.223) (-2289.790) (-2263.836) * (-2267.326) [-2252.889] (-2290.588) (-2275.191) -- 0:10:21
Average standard deviation of split frequencies: 0.020143
266000 -- (-2260.385) (-2288.432) [-2270.427] (-2278.565) * (-2272.732) [-2267.395] (-2273.572) (-2276.362) -- 0:10:18
267000 -- (-2279.440) (-2276.367) (-2280.802) [-2272.139] * [-2262.205] (-2295.220) (-2288.516) (-2264.725) -- 0:10:17
268000 -- (-2267.909) [-2259.416] (-2266.403) (-2273.908) * (-2274.371) (-2269.335) (-2277.273) [-2263.544] -- 0:10:17
269000 -- (-2285.180) (-2278.253) [-2266.726] (-2283.643) * (-2278.915) (-2282.943) [-2273.560] (-2262.056) -- 0:10:16
270000 -- (-2277.514) (-2279.615) (-2268.955) [-2261.207] * (-2269.611) (-2258.061) [-2262.203] (-2266.165) -- 0:10:16
Average standard deviation of split frequencies: 0.019370
271000 -- (-2274.624) (-2275.373) [-2263.747] (-2266.325) * (-2274.765) (-2257.772) (-2281.043) [-2249.601] -- 0:10:16
272000 -- (-2279.914) (-2261.900) [-2265.219] (-2268.582) * (-2271.618) (-2277.225) (-2266.041) [-2266.631] -- 0:10:15
273000 -- (-2271.322) [-2269.199] (-2266.754) (-2287.666) * (-2285.163) (-2272.176) [-2251.510] (-2280.419) -- 0:10:15
274000 -- (-2274.444) (-2265.959) [-2265.930] (-2285.543) * (-2288.023) (-2265.283) [-2264.534] (-2260.754) -- 0:10:14
275000 -- (-2264.679) (-2276.599) [-2267.096] (-2282.514) * (-2273.985) [-2273.739] (-2265.118) (-2269.540) -- 0:10:14
Average standard deviation of split frequencies: 0.017806
276000 -- (-2262.077) [-2257.993] (-2274.340) (-2276.679) * (-2264.740) (-2278.014) (-2275.439) [-2266.284] -- 0:10:11
277000 -- (-2270.379) [-2278.633] (-2277.113) (-2266.245) * (-2271.984) [-2262.326] (-2267.079) (-2268.516) -- 0:10:10
278000 -- (-2269.398) (-2287.112) (-2308.278) [-2262.137] * (-2268.601) (-2264.905) (-2263.164) [-2267.798] -- 0:10:10
279000 -- (-2274.022) (-2279.304) [-2268.527] (-2253.651) * (-2274.753) [-2277.384] (-2280.089) (-2262.781) -- 0:10:09
280000 -- (-2274.317) [-2259.129] (-2272.552) (-2269.160) * [-2262.712] (-2269.621) (-2269.818) (-2275.044) -- 0:10:09
Average standard deviation of split frequencies: 0.017804
281000 -- (-2281.089) (-2276.868) [-2266.210] (-2273.545) * (-2276.429) (-2282.252) (-2260.051) [-2272.558] -- 0:10:08
282000 -- [-2271.350] (-2265.550) (-2272.973) (-2262.135) * [-2253.434] (-2265.123) (-2268.777) (-2285.251) -- 0:10:08
283000 -- (-2280.432) (-2271.215) (-2267.582) [-2253.496] * (-2267.690) (-2263.295) (-2262.899) [-2274.314] -- 0:10:05
284000 -- (-2276.241) (-2289.869) [-2272.729] (-2284.456) * (-2271.495) [-2267.735] (-2281.447) (-2278.311) -- 0:10:05
285000 -- (-2268.623) (-2275.432) (-2281.975) [-2267.497] * (-2277.378) (-2259.866) (-2274.210) [-2264.451] -- 0:10:04
Average standard deviation of split frequencies: 0.017060
286000 -- (-2277.255) (-2262.234) (-2271.011) [-2265.586] * (-2270.148) (-2267.118) (-2283.074) [-2261.453] -- 0:10:04
287000 -- [-2271.123] (-2276.772) (-2281.359) (-2276.399) * [-2266.163] (-2263.793) (-2276.459) (-2291.032) -- 0:10:03
288000 -- (-2274.062) (-2280.456) [-2266.007] (-2274.919) * (-2266.398) (-2263.960) (-2267.051) [-2267.230] -- 0:10:03
289000 -- [-2274.735] (-2276.088) (-2273.850) (-2270.357) * (-2272.962) (-2272.548) (-2266.572) [-2264.966] -- 0:10:00
290000 -- (-2266.467) (-2276.988) [-2257.836] (-2270.230) * (-2275.935) (-2273.314) (-2273.123) [-2269.530] -- 0:09:59
Average standard deviation of split frequencies: 0.016907
291000 -- (-2264.549) [-2268.347] (-2283.013) (-2286.299) * (-2275.332) (-2294.765) [-2263.727] (-2263.365) -- 0:09:59
292000 -- [-2268.175] (-2274.027) (-2266.539) (-2276.281) * (-2274.593) [-2266.069] (-2273.788) (-2268.563) -- 0:09:58
293000 -- (-2265.570) (-2273.503) (-2269.936) [-2270.035] * (-2280.861) [-2266.996] (-2267.127) (-2270.123) -- 0:09:58
294000 -- [-2266.906] (-2265.623) (-2260.811) (-2279.568) * (-2275.306) [-2271.596] (-2265.385) (-2278.193) -- 0:09:57
295000 -- [-2261.843] (-2283.188) (-2275.389) (-2285.635) * (-2280.011) (-2282.313) [-2259.486] (-2281.554) -- 0:09:55
Average standard deviation of split frequencies: 0.017682
296000 -- [-2264.768] (-2290.676) (-2272.026) (-2282.553) * [-2283.521] (-2276.845) (-2274.215) (-2277.780) -- 0:09:54
297000 -- (-2270.176) (-2278.672) [-2275.897] (-2271.371) * (-2281.042) (-2276.919) [-2257.364] (-2278.711) -- 0:09:54
298000 -- [-2268.478] (-2275.415) (-2286.651) (-2283.785) * (-2277.527) (-2272.502) (-2264.616) [-2262.303] -- 0:09:53
299000 -- (-2266.998) (-2257.503) (-2274.664) [-2281.181] * (-2261.427) (-2263.236) (-2273.761) [-2265.485] -- 0:09:53
300000 -- (-2283.097) (-2271.477) [-2262.929] (-2273.249) * (-2287.959) [-2269.953] (-2278.956) (-2284.549) -- 0:09:52
Average standard deviation of split frequencies: 0.017412
301000 -- (-2275.723) (-2266.584) [-2256.467] (-2281.849) * (-2263.097) (-2285.044) (-2281.231) [-2269.563] -- 0:09:52
302000 -- (-2274.831) (-2277.137) (-2271.142) [-2262.835] * (-2265.594) [-2275.666] (-2279.023) (-2277.353) -- 0:09:49
303000 -- [-2268.035] (-2269.781) (-2274.884) (-2273.585) * (-2282.258) (-2289.510) (-2284.753) [-2267.879] -- 0:09:48
304000 -- [-2256.892] (-2299.920) (-2276.912) (-2266.053) * (-2267.408) (-2277.438) [-2270.783] (-2278.166) -- 0:09:48
305000 -- (-2263.162) (-2274.140) [-2264.849] (-2277.428) * (-2260.823) [-2267.099] (-2272.565) (-2276.381) -- 0:09:47
Average standard deviation of split frequencies: 0.016599
306000 -- (-2265.952) (-2259.415) [-2264.767] (-2272.272) * (-2272.212) (-2283.342) (-2274.079) [-2273.444] -- 0:09:47
307000 -- (-2272.354) (-2269.038) [-2260.193] (-2272.830) * (-2268.729) [-2274.536] (-2263.897) (-2263.351) -- 0:09:44
308000 -- [-2273.912] (-2284.114) (-2268.937) (-2277.245) * (-2276.620) (-2269.653) (-2276.737) [-2258.920] -- 0:09:44
309000 -- (-2269.992) (-2288.656) [-2268.563] (-2272.124) * (-2273.909) (-2276.181) [-2268.854] (-2277.074) -- 0:09:43
310000 -- (-2282.415) (-2284.158) (-2264.606) [-2260.041] * (-2282.565) (-2282.278) (-2275.644) [-2263.956] -- 0:09:43
Average standard deviation of split frequencies: 0.015402
311000 -- (-2282.073) [-2270.437] (-2278.945) (-2264.619) * (-2277.069) (-2297.394) [-2262.768] (-2276.748) -- 0:09:42
312000 -- (-2276.482) (-2277.932) [-2270.729] (-2282.002) * (-2293.348) (-2280.031) [-2253.619] (-2273.326) -- 0:09:42
313000 -- (-2285.875) (-2267.541) (-2268.826) [-2264.839] * (-2268.482) [-2272.205] (-2264.293) (-2275.327) -- 0:09:39
314000 -- (-2272.726) (-2289.786) (-2278.037) [-2273.141] * (-2261.252) (-2273.712) [-2268.915] (-2268.407) -- 0:09:38
315000 -- (-2281.402) [-2262.574] (-2279.965) (-2273.211) * (-2290.361) (-2272.936) (-2279.652) [-2262.776] -- 0:09:38
Average standard deviation of split frequencies: 0.016065
316000 -- (-2289.516) [-2265.275] (-2286.671) (-2281.403) * (-2286.853) (-2272.508) [-2256.388] (-2275.117) -- 0:09:37
317000 -- (-2280.575) [-2268.775] (-2292.170) (-2303.839) * (-2282.287) (-2285.537) [-2259.545] (-2271.449) -- 0:09:37
318000 -- (-2268.324) [-2270.972] (-2276.906) (-2271.381) * (-2273.141) (-2275.946) (-2266.433) [-2270.854] -- 0:09:36
319000 -- (-2273.263) [-2270.010] (-2292.888) (-2287.491) * (-2276.972) (-2278.762) [-2272.195] (-2260.026) -- 0:09:34
320000 -- [-2259.147] (-2282.279) (-2263.226) (-2270.674) * (-2264.917) (-2276.830) (-2265.136) [-2262.782] -- 0:09:33
Average standard deviation of split frequencies: 0.016326
321000 -- (-2276.952) (-2275.037) (-2278.882) [-2263.066] * (-2285.681) (-2286.435) [-2261.772] (-2268.812) -- 0:09:33
322000 -- (-2283.782) [-2257.154] (-2273.484) (-2267.922) * (-2267.056) (-2262.830) [-2270.110] (-2282.418) -- 0:09:32
323000 -- (-2280.933) (-2271.619) [-2263.900] (-2271.401) * (-2254.559) (-2278.334) [-2267.169] (-2267.041) -- 0:09:32
324000 -- [-2268.427] (-2263.607) (-2277.690) (-2269.073) * [-2268.630] (-2275.305) (-2279.773) (-2274.528) -- 0:09:31
325000 -- (-2268.526) (-2273.318) [-2268.569] (-2258.528) * (-2270.819) (-2283.018) [-2264.046] (-2262.049) -- 0:09:31
Average standard deviation of split frequencies: 0.016500
326000 -- (-2258.979) (-2279.290) [-2264.757] (-2276.174) * (-2278.373) (-2285.657) (-2262.645) [-2262.676] -- 0:09:28
327000 -- [-2270.765] (-2297.253) (-2268.672) (-2267.762) * (-2263.437) (-2274.699) (-2278.539) [-2275.434] -- 0:09:28
328000 -- [-2267.958] (-2282.295) (-2278.164) (-2255.468) * (-2271.271) (-2278.053) [-2266.763] (-2276.873) -- 0:09:27
329000 -- (-2281.653) [-2271.314] (-2270.707) (-2263.022) * (-2283.623) (-2269.924) (-2275.376) [-2256.804] -- 0:09:26
330000 -- (-2294.700) (-2275.954) [-2261.755] (-2273.121) * (-2285.100) (-2276.124) (-2275.312) [-2266.647] -- 0:09:26
Average standard deviation of split frequencies: 0.017217
331000 -- (-2292.193) (-2271.477) [-2264.548] (-2273.277) * [-2274.921] (-2274.324) (-2288.528) (-2273.801) -- 0:09:25
332000 -- [-2287.962] (-2300.702) (-2275.866) (-2265.774) * (-2281.162) [-2275.874] (-2286.075) (-2267.402) -- 0:09:25
333000 -- (-2284.799) (-2279.907) (-2270.029) [-2268.941] * (-2271.855) (-2263.629) [-2258.691] (-2292.843) -- 0:09:22
334000 -- (-2272.443) (-2264.920) [-2262.801] (-2268.546) * (-2276.248) (-2266.653) [-2256.889] (-2276.122) -- 0:09:22
335000 -- (-2281.577) (-2268.347) (-2273.616) [-2262.520] * (-2283.512) (-2288.521) (-2276.527) [-2268.406] -- 0:09:21
Average standard deviation of split frequencies: 0.017483
336000 -- (-2274.908) (-2276.739) [-2272.411] (-2270.589) * (-2262.165) (-2283.087) (-2269.781) [-2277.384] -- 0:09:21
337000 -- (-2281.847) (-2272.417) (-2262.878) [-2250.996] * (-2271.892) (-2282.322) (-2290.700) [-2273.897] -- 0:09:20
338000 -- [-2282.019] (-2283.405) (-2256.514) (-2269.883) * (-2283.849) (-2272.594) (-2279.462) [-2267.139] -- 0:09:20
339000 -- (-2282.555) [-2274.393] (-2262.215) (-2279.233) * [-2256.838] (-2271.837) (-2267.797) (-2269.142) -- 0:09:17
340000 -- (-2269.161) (-2279.888) [-2254.219] (-2273.194) * (-2283.898) (-2260.670) (-2281.090) [-2262.809] -- 0:09:17
Average standard deviation of split frequencies: 0.017539
341000 -- (-2281.217) (-2273.296) [-2258.592] (-2273.747) * (-2274.215) (-2271.179) [-2253.326] (-2267.119) -- 0:09:16
342000 -- (-2271.605) (-2290.906) [-2259.355] (-2273.658) * (-2272.638) (-2282.717) (-2264.170) [-2257.878] -- 0:09:16
343000 -- [-2272.138] (-2283.338) (-2269.560) (-2287.813) * [-2268.632] (-2276.717) (-2279.456) (-2280.994) -- 0:09:15
344000 -- (-2265.014) (-2276.082) [-2266.211] (-2274.460) * (-2263.445) (-2292.889) (-2263.845) [-2266.712] -- 0:09:14
345000 -- (-2280.378) [-2272.170] (-2285.219) (-2268.988) * [-2274.977] (-2261.874) (-2273.409) (-2267.283) -- 0:09:12
Average standard deviation of split frequencies: 0.019551
346000 -- (-2271.734) (-2280.501) (-2278.739) [-2265.037] * (-2282.076) (-2269.652) [-2254.412] (-2280.220) -- 0:09:11
347000 -- (-2273.897) (-2276.001) [-2266.044] (-2265.164) * [-2269.691] (-2271.171) (-2282.627) (-2276.032) -- 0:09:11
348000 -- (-2286.270) (-2279.240) (-2287.109) [-2269.755] * (-2279.431) (-2282.821) (-2265.233) [-2260.630] -- 0:09:10
349000 -- (-2274.487) (-2279.377) (-2280.690) [-2271.692] * (-2271.710) [-2264.226] (-2276.205) (-2268.206) -- 0:09:10
350000 -- (-2268.227) [-2264.977] (-2276.824) (-2298.442) * (-2261.730) [-2264.614] (-2286.133) (-2269.491) -- 0:09:09
Average standard deviation of split frequencies: 0.020198
351000 -- [-2264.145] (-2272.398) (-2274.914) (-2269.605) * (-2271.560) (-2267.994) (-2278.225) [-2269.238] -- 0:09:09
352000 -- (-2268.368) (-2286.318) (-2278.074) [-2262.089] * (-2277.892) [-2260.789] (-2275.993) (-2268.740) -- 0:09:06
353000 -- (-2272.667) (-2278.001) [-2260.694] (-2276.812) * (-2264.951) (-2259.963) (-2287.641) [-2266.849] -- 0:09:06
354000 -- (-2278.125) (-2265.489) (-2276.697) [-2268.554] * (-2267.868) [-2265.404] (-2267.033) (-2272.300) -- 0:09:05
355000 -- (-2261.650) (-2267.190) [-2274.411] (-2272.936) * (-2270.308) (-2271.383) [-2264.797] (-2272.710) -- 0:09:05
Average standard deviation of split frequencies: 0.019557
356000 -- [-2255.376] (-2270.359) (-2277.663) (-2270.265) * (-2261.206) [-2268.143] (-2273.008) (-2268.343) -- 0:09:04
357000 -- (-2267.653) [-2263.237] (-2287.120) (-2265.694) * (-2270.214) [-2263.600] (-2269.932) (-2268.269) -- 0:09:03
358000 -- [-2259.770] (-2283.954) (-2269.064) (-2266.834) * (-2277.332) (-2266.737) [-2268.315] (-2272.450) -- 0:09:01
359000 -- (-2276.390) (-2290.198) (-2269.007) [-2262.692] * (-2282.259) (-2268.980) (-2264.004) [-2268.216] -- 0:09:01
360000 -- (-2270.055) (-2275.544) [-2261.568] (-2259.436) * (-2267.927) [-2258.286] (-2279.526) (-2265.786) -- 0:09:00
Average standard deviation of split frequencies: 0.019069
361000 -- [-2257.465] (-2265.270) (-2278.244) (-2273.674) * (-2269.842) (-2263.005) [-2270.890] (-2286.772) -- 0:08:59
362000 -- [-2265.458] (-2262.981) (-2289.220) (-2262.965) * (-2266.262) [-2260.534] (-2277.497) (-2277.392) -- 0:08:59
363000 -- (-2266.113) (-2288.736) (-2274.023) [-2265.310] * (-2262.955) [-2270.788] (-2282.054) (-2281.407) -- 0:08:58
364000 -- [-2277.288] (-2278.942) (-2256.550) (-2265.946) * [-2263.901] (-2268.581) (-2301.886) (-2267.807) -- 0:08:56
365000 -- (-2280.636) (-2272.186) [-2266.847] (-2264.946) * (-2268.227) [-2269.588] (-2286.350) (-2280.148) -- 0:08:55
Average standard deviation of split frequencies: 0.018791
366000 -- (-2267.953) (-2271.669) [-2265.807] (-2271.618) * (-2275.951) (-2283.069) (-2278.587) [-2262.985] -- 0:08:55
367000 -- (-2263.772) (-2295.699) [-2264.722] (-2275.624) * (-2271.109) (-2285.457) (-2271.046) [-2255.241] -- 0:08:54
368000 -- (-2291.949) (-2282.644) (-2267.874) [-2247.556] * [-2271.550] (-2279.122) (-2292.217) (-2272.571) -- 0:08:54
369000 -- [-2256.001] (-2274.314) (-2268.446) (-2286.489) * [-2264.213] (-2261.055) (-2278.263) (-2265.622) -- 0:08:53
370000 -- (-2277.505) (-2268.595) [-2259.466] (-2284.599) * (-2260.033) (-2277.455) (-2278.008) [-2268.747] -- 0:08:51
Average standard deviation of split frequencies: 0.017870
371000 -- (-2279.549) (-2284.054) [-2259.409] (-2268.782) * [-2265.250] (-2262.462) (-2267.847) (-2269.075) -- 0:08:50
372000 -- (-2285.939) [-2270.046] (-2277.775) (-2279.530) * [-2267.539] (-2264.653) (-2275.738) (-2277.507) -- 0:08:50
373000 -- (-2276.051) (-2271.791) [-2261.786] (-2275.240) * (-2277.382) (-2278.684) [-2274.367] (-2260.422) -- 0:08:49
374000 -- [-2276.639] (-2268.791) (-2273.557) (-2285.936) * (-2265.096) [-2262.305] (-2278.269) (-2279.133) -- 0:08:48
375000 -- (-2260.355) (-2280.476) [-2264.469] (-2287.283) * (-2263.984) [-2260.891] (-2274.001) (-2285.675) -- 0:08:48
Average standard deviation of split frequencies: 0.016491
376000 -- [-2264.561] (-2280.180) (-2264.976) (-2273.586) * (-2267.803) [-2278.109] (-2264.574) (-2269.551) -- 0:08:47
377000 -- (-2272.678) (-2273.728) (-2270.455) [-2268.845] * [-2281.360] (-2275.313) (-2268.002) (-2272.226) -- 0:08:47
378000 -- (-2262.554) (-2283.288) [-2277.452] (-2280.046) * (-2270.327) (-2266.174) (-2289.020) [-2262.606] -- 0:08:44
379000 -- (-2273.733) (-2280.203) [-2270.362] (-2284.090) * [-2265.313] (-2266.008) (-2257.019) (-2278.806) -- 0:08:44
380000 -- (-2262.927) (-2290.237) [-2263.645] (-2273.070) * (-2274.669) (-2277.772) [-2268.458] (-2268.484) -- 0:08:43
Average standard deviation of split frequencies: 0.016067
381000 -- (-2274.573) [-2275.190] (-2273.712) (-2277.279) * (-2276.231) [-2260.690] (-2299.314) (-2266.304) -- 0:08:43
382000 -- (-2270.627) [-2271.302] (-2271.584) (-2280.814) * (-2276.909) [-2271.281] (-2290.610) (-2277.120) -- 0:08:42
383000 -- (-2278.466) (-2266.182) [-2269.815] (-2281.705) * (-2275.628) (-2276.594) [-2265.235] (-2266.658) -- 0:08:41
384000 -- (-2273.884) (-2261.154) [-2270.032] (-2271.026) * (-2271.711) (-2273.512) (-2273.846) [-2274.173] -- 0:08:41
385000 -- (-2285.912) [-2266.038] (-2265.673) (-2274.971) * (-2272.440) (-2266.869) [-2260.560] (-2270.571) -- 0:08:39
Average standard deviation of split frequencies: 0.015187
386000 -- [-2266.684] (-2284.977) (-2260.460) (-2263.513) * (-2278.751) [-2255.276] (-2264.236) (-2273.933) -- 0:08:38
387000 -- [-2265.525] (-2277.441) (-2280.822) (-2278.870) * (-2276.470) (-2279.317) [-2265.036] (-2263.092) -- 0:08:37
388000 -- (-2271.351) [-2266.571] (-2275.504) (-2278.033) * (-2274.029) (-2268.965) (-2279.787) [-2265.393] -- 0:08:37
389000 -- (-2273.913) (-2279.333) [-2260.892] (-2270.614) * (-2267.416) [-2259.424] (-2291.635) (-2281.874) -- 0:08:36
390000 -- (-2265.509) (-2278.956) [-2258.644] (-2287.673) * [-2269.037] (-2279.479) (-2288.133) (-2277.332) -- 0:08:36
Average standard deviation of split frequencies: 0.015934
391000 -- [-2278.005] (-2287.018) (-2275.815) (-2276.790) * (-2263.536) [-2253.895] (-2287.603) (-2268.030) -- 0:08:33
392000 -- (-2261.425) (-2282.344) [-2264.212] (-2277.619) * (-2284.934) (-2280.017) (-2287.918) [-2281.691] -- 0:08:33
393000 -- (-2259.250) (-2290.178) [-2251.666] (-2283.266) * [-2273.903] (-2276.447) (-2276.047) (-2266.138) -- 0:08:32
394000 -- (-2261.899) (-2276.426) [-2254.934] (-2269.948) * [-2269.244] (-2278.704) (-2280.457) (-2270.163) -- 0:08:32
395000 -- (-2274.092) (-2260.421) [-2264.222] (-2269.621) * (-2282.560) (-2265.616) (-2272.627) [-2264.330] -- 0:08:31
Average standard deviation of split frequencies: 0.015659
396000 -- (-2290.994) (-2284.409) [-2256.743] (-2268.329) * (-2275.463) (-2286.175) [-2270.700] (-2271.026) -- 0:08:30
397000 -- (-2271.887) (-2275.490) (-2279.136) [-2275.508] * (-2278.935) (-2275.530) (-2275.036) [-2276.845] -- 0:08:28
398000 -- (-2277.178) (-2270.304) [-2266.827] (-2274.549) * (-2278.054) (-2262.342) [-2261.528] (-2284.273) -- 0:08:28
399000 -- (-2267.228) (-2271.011) (-2275.295) [-2264.712] * (-2263.011) (-2271.789) [-2260.594] (-2276.673) -- 0:08:27
400000 -- (-2267.536) (-2273.600) (-2275.877) [-2271.391] * (-2271.819) (-2271.701) [-2270.620] (-2276.467) -- 0:08:27
Average standard deviation of split frequencies: 0.016131
401000 -- (-2281.495) (-2269.047) [-2262.199] (-2277.687) * (-2263.660) (-2280.140) [-2271.510] (-2278.166) -- 0:08:26
402000 -- [-2260.708] (-2267.440) (-2269.143) (-2272.787) * [-2267.031] (-2281.375) (-2266.836) (-2276.233) -- 0:08:24
403000 -- [-2276.438] (-2280.448) (-2272.715) (-2265.104) * [-2266.015] (-2264.207) (-2276.088) (-2283.853) -- 0:08:23
404000 -- [-2263.961] (-2296.717) (-2273.737) (-2273.261) * [-2264.754] (-2281.629) (-2284.117) (-2264.383) -- 0:08:23
405000 -- (-2296.493) (-2265.407) [-2260.207] (-2261.640) * (-2257.548) (-2261.454) [-2261.668] (-2252.991) -- 0:08:22
Average standard deviation of split frequencies: 0.015332
406000 -- (-2299.404) (-2265.456) (-2271.880) [-2269.988] * [-2273.504] (-2262.530) (-2267.552) (-2257.547) -- 0:08:21
407000 -- (-2287.573) (-2274.218) [-2258.184] (-2267.276) * [-2274.792] (-2283.252) (-2282.766) (-2257.584) -- 0:08:19
408000 -- [-2277.368] (-2270.642) (-2271.127) (-2279.333) * (-2270.632) (-2276.257) [-2266.818] (-2274.901) -- 0:08:19
409000 -- (-2280.866) (-2270.185) [-2271.638] (-2270.465) * (-2268.935) (-2270.465) (-2298.283) [-2260.729] -- 0:08:18
410000 -- (-2273.962) [-2258.842] (-2271.066) (-2297.174) * [-2269.627] (-2266.050) (-2287.430) (-2267.014) -- 0:08:17
Average standard deviation of split frequencies: 0.014982
411000 -- (-2270.112) (-2267.296) [-2269.228] (-2293.204) * (-2273.901) (-2254.580) [-2272.057] (-2267.639) -- 0:08:17
412000 -- (-2267.099) [-2268.015] (-2287.574) (-2285.069) * [-2272.518] (-2273.243) (-2275.752) (-2289.924) -- 0:08:16
413000 -- [-2269.481] (-2274.994) (-2267.854) (-2299.542) * [-2266.824] (-2281.266) (-2271.771) (-2268.044) -- 0:08:14
414000 -- [-2253.940] (-2264.196) (-2277.803) (-2287.315) * [-2270.266] (-2277.832) (-2263.855) (-2289.070) -- 0:08:13
415000 -- (-2262.048) (-2273.274) [-2259.076] (-2284.182) * (-2268.412) [-2266.029] (-2288.153) (-2266.010) -- 0:08:13
Average standard deviation of split frequencies: 0.014760
416000 -- (-2267.070) (-2270.188) [-2263.758] (-2262.383) * (-2265.252) [-2274.539] (-2266.377) (-2270.502) -- 0:08:12
417000 -- [-2264.498] (-2272.909) (-2269.547) (-2281.363) * [-2263.767] (-2261.594) (-2272.744) (-2280.206) -- 0:08:12
418000 -- [-2274.050] (-2283.842) (-2265.005) (-2280.909) * (-2284.698) (-2267.614) [-2264.510] (-2289.243) -- 0:08:11
419000 -- (-2270.844) (-2266.709) [-2264.185] (-2281.525) * (-2277.071) [-2266.400] (-2264.815) (-2273.060) -- 0:08:09
420000 -- (-2264.820) [-2266.000] (-2272.965) (-2258.098) * [-2265.927] (-2272.374) (-2270.727) (-2279.368) -- 0:08:08
Average standard deviation of split frequencies: 0.013821
421000 -- (-2261.310) (-2282.788) (-2292.480) [-2263.131] * (-2275.355) [-2272.498] (-2277.612) (-2274.351) -- 0:08:08
422000 -- (-2277.345) (-2276.355) [-2270.252] (-2260.238) * (-2280.733) [-2269.912] (-2267.763) (-2279.053) -- 0:08:07
423000 -- (-2280.190) [-2274.372] (-2272.388) (-2267.119) * (-2272.681) (-2273.740) (-2268.991) [-2281.321] -- 0:08:06
424000 -- (-2274.900) [-2263.651] (-2281.939) (-2266.020) * [-2270.075] (-2269.600) (-2267.279) (-2280.134) -- 0:08:06
425000 -- (-2271.810) (-2269.163) [-2259.506] (-2262.061) * (-2279.445) [-2250.798] (-2291.104) (-2275.783) -- 0:08:05
Average standard deviation of split frequencies: 0.014017
426000 -- (-2272.587) (-2285.569) (-2269.362) [-2267.433] * [-2261.162] (-2257.366) (-2271.661) (-2275.593) -- 0:08:05
427000 -- (-2273.283) [-2271.997] (-2271.356) (-2278.107) * (-2265.854) (-2264.739) [-2268.018] (-2280.960) -- 0:08:03
428000 -- (-2265.217) (-2269.167) (-2270.989) [-2256.474] * (-2267.760) (-2289.228) [-2254.356] (-2268.001) -- 0:08:02
429000 -- (-2283.248) (-2269.663) (-2271.456) [-2273.386] * [-2265.205] (-2296.258) (-2286.569) (-2277.556) -- 0:08:01
430000 -- [-2273.242] (-2267.778) (-2282.527) (-2275.032) * (-2286.936) (-2288.368) [-2263.639] (-2268.673) -- 0:08:01
Average standard deviation of split frequencies: 0.014476
431000 -- [-2260.530] (-2275.267) (-2272.110) (-2283.750) * (-2292.998) (-2276.548) [-2279.986] (-2272.396) -- 0:08:00
432000 -- (-2284.758) (-2288.294) (-2261.377) [-2266.798] * [-2264.111] (-2287.104) (-2272.676) (-2269.091) -- 0:07:59
433000 -- (-2282.470) [-2257.942] (-2262.582) (-2265.075) * (-2269.922) (-2294.752) [-2269.959] (-2272.345) -- 0:07:59
434000 -- (-2285.989) (-2274.333) (-2269.517) [-2271.440] * (-2269.737) (-2279.926) (-2276.575) [-2253.264] -- 0:07:57
435000 -- [-2275.524] (-2285.117) (-2272.294) (-2273.808) * (-2261.397) [-2264.889] (-2278.313) (-2258.662) -- 0:07:56
Average standard deviation of split frequencies: 0.014191
436000 -- (-2264.779) [-2263.702] (-2262.548) (-2274.830) * (-2268.258) [-2269.018] (-2284.645) (-2258.778) -- 0:07:56
437000 -- [-2269.752] (-2273.042) (-2263.515) (-2268.614) * (-2266.132) (-2265.586) (-2288.685) [-2258.121] -- 0:07:55
438000 -- [-2261.059] (-2272.947) (-2268.758) (-2288.606) * [-2270.959] (-2268.922) (-2291.252) (-2275.294) -- 0:07:54
439000 -- (-2269.612) (-2276.763) (-2263.657) [-2271.139] * (-2268.940) (-2275.790) [-2263.250] (-2283.413) -- 0:07:54
440000 -- (-2268.963) (-2274.349) [-2260.764] (-2284.372) * (-2273.719) [-2254.801] (-2294.332) (-2276.362) -- 0:07:53
Average standard deviation of split frequencies: 0.014763
441000 -- (-2283.494) (-2275.668) (-2271.938) [-2272.697] * (-2283.297) (-2270.448) [-2262.048] (-2262.757) -- 0:07:51
442000 -- [-2256.158] (-2266.452) (-2272.031) (-2288.508) * (-2280.329) (-2274.743) (-2267.493) [-2257.886] -- 0:07:50
443000 -- (-2257.611) [-2263.283] (-2277.460) (-2272.210) * (-2278.467) (-2283.299) (-2262.392) [-2257.213] -- 0:07:50
444000 -- (-2270.189) [-2270.367] (-2279.733) (-2255.029) * [-2271.739] (-2279.309) (-2280.256) (-2266.499) -- 0:07:49
445000 -- [-2271.293] (-2266.678) (-2279.417) (-2261.636) * (-2271.119) (-2272.847) [-2256.946] (-2287.998) -- 0:07:48
Average standard deviation of split frequencies: 0.014205
446000 -- (-2280.663) [-2261.228] (-2272.017) (-2265.163) * (-2273.683) (-2267.496) [-2249.946] (-2261.106) -- 0:07:48
447000 -- (-2276.172) (-2271.444) [-2277.369] (-2269.010) * (-2288.848) (-2278.680) (-2265.796) [-2277.233] -- 0:07:47
448000 -- (-2265.120) (-2296.396) [-2276.012] (-2260.459) * (-2290.157) (-2276.267) (-2277.756) [-2260.734] -- 0:07:45
449000 -- (-2279.037) (-2278.266) [-2260.009] (-2270.239) * [-2271.962] (-2273.144) (-2266.258) (-2266.119) -- 0:07:45
450000 -- (-2267.503) [-2256.243] (-2280.298) (-2272.061) * (-2260.340) (-2278.649) [-2278.456] (-2271.744) -- 0:07:44
Average standard deviation of split frequencies: 0.014057
451000 -- (-2266.408) [-2265.083] (-2280.643) (-2274.868) * (-2283.665) (-2275.074) [-2270.760] (-2270.229) -- 0:07:43
452000 -- (-2289.946) [-2261.413] (-2264.602) (-2273.838) * (-2291.476) (-2270.963) [-2266.512] (-2269.721) -- 0:07:43
453000 -- (-2278.584) [-2269.716] (-2267.733) (-2274.827) * (-2278.242) [-2269.476] (-2268.239) (-2281.759) -- 0:07:42
454000 -- [-2264.069] (-2284.272) (-2293.953) (-2261.045) * [-2279.090] (-2281.913) (-2277.361) (-2278.784) -- 0:07:41
455000 -- (-2281.659) (-2285.049) [-2259.716] (-2266.244) * (-2260.738) (-2274.748) [-2275.862] (-2263.993) -- 0:07:39
Average standard deviation of split frequencies: 0.014498
456000 -- (-2271.332) [-2271.618] (-2278.116) (-2265.699) * (-2282.679) [-2267.255] (-2286.574) (-2270.388) -- 0:07:39
457000 -- (-2282.757) (-2274.946) (-2274.581) [-2261.822] * (-2266.602) (-2265.996) [-2266.068] (-2271.100) -- 0:07:38
458000 -- [-2266.256] (-2275.288) (-2268.237) (-2272.320) * (-2284.366) [-2276.043] (-2270.913) (-2286.862) -- 0:07:37
459000 -- (-2262.437) (-2272.407) (-2276.570) [-2260.870] * [-2269.095] (-2270.691) (-2277.491) (-2265.064) -- 0:07:37
460000 -- (-2266.389) (-2278.980) [-2268.798] (-2268.578) * [-2268.019] (-2263.199) (-2255.446) (-2271.762) -- 0:07:36
Average standard deviation of split frequencies: 0.014557
461000 -- (-2274.595) (-2263.638) [-2256.628] (-2278.610) * (-2275.115) (-2266.887) (-2269.076) [-2281.307] -- 0:07:35
462000 -- (-2270.626) (-2288.227) (-2279.022) [-2287.595] * (-2264.258) (-2263.034) [-2266.855] (-2281.338) -- 0:07:34
463000 -- (-2280.238) (-2264.271) [-2267.213] (-2274.825) * (-2268.402) [-2261.962] (-2265.928) (-2272.910) -- 0:07:33
464000 -- (-2264.636) (-2276.698) [-2264.648] (-2267.521) * (-2268.723) (-2273.345) (-2268.386) [-2263.070] -- 0:07:32
465000 -- (-2268.617) [-2262.758] (-2270.161) (-2298.716) * (-2278.769) (-2281.664) [-2255.513] (-2266.134) -- 0:07:32
Average standard deviation of split frequencies: 0.013644
466000 -- (-2280.228) (-2255.122) [-2262.459] (-2274.830) * (-2266.222) (-2302.718) [-2260.410] (-2265.057) -- 0:07:31
467000 -- (-2266.378) (-2264.851) [-2269.181] (-2281.356) * (-2265.312) (-2272.665) (-2261.592) [-2257.194] -- 0:07:30
468000 -- (-2281.853) (-2280.984) [-2265.741] (-2289.297) * [-2256.487] (-2274.855) (-2277.672) (-2266.574) -- 0:07:29
469000 -- (-2271.007) [-2261.856] (-2283.814) (-2275.300) * [-2276.674] (-2280.376) (-2272.709) (-2281.595) -- 0:07:28
470000 -- (-2274.621) (-2258.312) (-2280.231) [-2264.922] * [-2273.360] (-2283.952) (-2263.293) (-2268.215) -- 0:07:27
Average standard deviation of split frequencies: 0.013621
471000 -- (-2275.543) [-2271.893] (-2271.136) (-2271.084) * (-2298.400) [-2275.972] (-2273.121) (-2266.920) -- 0:07:27
472000 -- (-2287.951) (-2288.453) [-2265.037] (-2280.071) * (-2290.546) (-2272.855) (-2279.287) [-2268.849] -- 0:07:26
473000 -- (-2280.399) (-2268.763) (-2276.261) [-2268.334] * (-2282.334) [-2263.091] (-2275.594) (-2286.301) -- 0:07:25
474000 -- (-2294.494) (-2271.751) [-2270.718] (-2276.740) * [-2268.466] (-2275.520) (-2265.878) (-2290.333) -- 0:07:24
475000 -- (-2266.497) (-2280.496) [-2263.091] (-2278.781) * [-2263.760] (-2272.661) (-2262.479) (-2278.521) -- 0:07:24
Average standard deviation of split frequencies: 0.013164
476000 -- (-2283.574) [-2269.875] (-2274.840) (-2273.061) * (-2275.260) (-2282.022) (-2261.773) [-2280.914] -- 0:07:23
477000 -- (-2271.249) [-2279.008] (-2282.459) (-2271.892) * (-2276.914) (-2274.599) [-2273.578] (-2283.864) -- 0:07:22
478000 -- (-2263.044) (-2268.703) (-2274.758) [-2260.975] * (-2263.070) (-2281.686) [-2252.835] (-2278.088) -- 0:07:21
479000 -- (-2287.115) (-2262.057) (-2282.557) [-2267.920] * (-2269.202) (-2283.872) [-2267.499] (-2253.230) -- 0:07:20
480000 -- (-2271.722) [-2264.938] (-2281.877) (-2268.338) * (-2260.560) (-2287.340) [-2257.573] (-2272.129) -- 0:07:19
Average standard deviation of split frequencies: 0.012247
481000 -- (-2279.871) (-2267.873) (-2279.832) [-2260.706] * (-2277.533) (-2275.665) (-2262.151) [-2273.235] -- 0:07:19
482000 -- [-2255.764] (-2289.051) (-2281.453) (-2260.568) * [-2266.066] (-2281.174) (-2285.521) (-2274.690) -- 0:07:18
483000 -- (-2275.569) (-2265.637) (-2283.443) [-2267.897] * (-2285.061) (-2269.163) [-2271.637] (-2270.386) -- 0:07:17
484000 -- [-2278.908] (-2272.164) (-2277.755) (-2280.871) * (-2267.360) (-2266.881) [-2263.727] (-2274.710) -- 0:07:16
485000 -- (-2271.959) [-2259.393] (-2274.023) (-2277.642) * [-2267.471] (-2273.160) (-2270.883) (-2269.916) -- 0:07:15
Average standard deviation of split frequencies: 0.011900
486000 -- (-2282.548) [-2261.779] (-2261.655) (-2270.078) * [-2256.451] (-2276.750) (-2268.521) (-2263.710) -- 0:07:14
487000 -- (-2265.083) [-2261.480] (-2283.316) (-2286.325) * [-2264.302] (-2272.600) (-2271.558) (-2288.989) -- 0:07:13
488000 -- (-2265.508) (-2268.002) [-2265.423] (-2282.604) * [-2263.175] (-2284.596) (-2279.709) (-2268.834) -- 0:07:13
489000 -- [-2264.291] (-2258.735) (-2276.965) (-2272.820) * (-2284.791) [-2254.492] (-2277.029) (-2266.905) -- 0:07:12
490000 -- [-2274.528] (-2274.904) (-2275.602) (-2278.773) * (-2282.571) (-2260.682) (-2267.050) [-2280.135] -- 0:07:10
Average standard deviation of split frequencies: 0.011388
491000 -- [-2270.790] (-2274.501) (-2277.516) (-2279.007) * (-2289.484) (-2267.713) (-2274.311) [-2269.573] -- 0:07:10
492000 -- (-2262.061) (-2289.852) (-2263.734) [-2264.115] * (-2273.795) [-2264.117] (-2269.600) (-2287.824) -- 0:07:09
493000 -- (-2264.992) (-2255.092) (-2279.423) [-2263.758] * (-2283.221) (-2270.728) (-2274.139) [-2262.337] -- 0:07:08
494000 -- (-2265.720) [-2256.302] (-2279.224) (-2274.920) * (-2275.057) (-2282.551) (-2268.563) [-2266.389] -- 0:07:08
495000 -- (-2279.168) (-2258.618) (-2279.247) [-2264.528] * (-2280.912) (-2266.702) (-2274.803) [-2268.312] -- 0:07:07
Average standard deviation of split frequencies: 0.011382
496000 -- (-2274.356) (-2259.922) [-2281.624] (-2291.778) * [-2270.680] (-2275.408) (-2285.134) (-2274.019) -- 0:07:06
497000 -- (-2279.882) (-2268.887) [-2257.269] (-2275.184) * (-2279.698) [-2267.814] (-2271.541) (-2280.314) -- 0:07:05
498000 -- (-2275.455) (-2276.399) [-2258.481] (-2274.915) * (-2273.463) [-2271.085] (-2268.534) (-2272.886) -- 0:07:04
499000 -- [-2264.757] (-2274.908) (-2276.099) (-2277.321) * (-2285.431) [-2272.216] (-2268.775) (-2269.486) -- 0:07:03
500000 -- (-2273.394) (-2287.785) (-2267.178) [-2261.628] * (-2274.279) (-2269.813) [-2277.191] (-2266.614) -- 0:07:03
Average standard deviation of split frequencies: 0.011275
501000 -- (-2264.996) [-2266.257] (-2268.539) (-2267.215) * (-2282.020) (-2287.645) (-2252.056) [-2257.553] -- 0:07:02
502000 -- [-2259.421] (-2290.212) (-2279.761) (-2264.460) * (-2275.671) [-2266.684] (-2262.218) (-2269.660) -- 0:07:01
503000 -- (-2281.105) (-2273.947) [-2265.980] (-2267.228) * (-2266.916) (-2272.336) (-2275.930) [-2273.624] -- 0:06:59
504000 -- (-2276.136) (-2275.546) (-2267.640) [-2265.779] * [-2272.371] (-2269.554) (-2267.824) (-2281.266) -- 0:06:59
505000 -- (-2275.887) (-2274.547) [-2263.847] (-2272.911) * (-2269.927) (-2275.073) (-2288.084) [-2265.150] -- 0:06:58
Average standard deviation of split frequencies: 0.012367
506000 -- (-2267.586) (-2296.045) (-2276.932) [-2262.954] * (-2259.333) [-2265.028] (-2276.077) (-2273.327) -- 0:06:57
507000 -- (-2266.842) (-2279.694) [-2264.076] (-2270.980) * (-2287.977) (-2267.787) [-2257.665] (-2278.820) -- 0:06:57
508000 -- (-2290.684) (-2271.688) [-2261.596] (-2257.515) * (-2269.428) (-2280.015) [-2258.226] (-2273.308) -- 0:06:56
509000 -- [-2267.136] (-2275.263) (-2265.215) (-2279.197) * (-2260.353) (-2280.614) (-2278.786) [-2270.718] -- 0:06:54
510000 -- (-2296.401) (-2268.124) (-2270.009) [-2269.049] * [-2270.814] (-2261.775) (-2277.579) (-2270.588) -- 0:06:54
Average standard deviation of split frequencies: 0.012508
511000 -- (-2277.292) (-2277.422) (-2272.755) [-2261.773] * (-2262.589) (-2269.414) [-2269.816] (-2267.562) -- 0:06:53
512000 -- [-2258.065] (-2269.536) (-2281.893) (-2278.765) * [-2263.215] (-2270.986) (-2275.723) (-2273.035) -- 0:06:52
513000 -- (-2266.842) [-2272.734] (-2275.294) (-2276.391) * [-2254.731] (-2272.495) (-2273.374) (-2286.770) -- 0:06:52
514000 -- [-2258.360] (-2260.137) (-2265.414) (-2265.672) * [-2258.808] (-2281.528) (-2275.583) (-2282.017) -- 0:06:51
515000 -- (-2268.067) (-2261.808) [-2261.535] (-2283.255) * (-2264.699) [-2257.419] (-2280.754) (-2269.352) -- 0:06:49
Average standard deviation of split frequencies: 0.011945
516000 -- [-2263.083] (-2273.046) (-2259.405) (-2278.631) * (-2275.664) (-2287.186) [-2257.699] (-2279.216) -- 0:06:48
517000 -- [-2267.201] (-2267.166) (-2272.759) (-2263.382) * (-2286.898) (-2280.481) (-2268.012) [-2267.586] -- 0:06:48
518000 -- (-2291.241) [-2282.568] (-2259.451) (-2261.193) * (-2271.597) (-2282.084) (-2264.276) [-2265.598] -- 0:06:47
519000 -- (-2273.177) (-2289.400) (-2259.886) [-2258.608] * (-2294.701) [-2270.569] (-2269.588) (-2277.357) -- 0:06:46
520000 -- (-2274.649) (-2280.095) (-2271.597) [-2277.685] * [-2262.533] (-2272.019) (-2281.838) (-2277.394) -- 0:06:46
Average standard deviation of split frequencies: 0.011521
521000 -- (-2281.198) (-2261.764) [-2257.589] (-2261.168) * (-2273.184) (-2282.330) [-2268.700] (-2288.663) -- 0:06:44
522000 -- (-2274.087) [-2276.389] (-2274.711) (-2268.090) * [-2259.242] (-2288.976) (-2268.576) (-2284.428) -- 0:06:43
523000 -- (-2286.620) (-2266.742) [-2268.677] (-2262.961) * (-2261.971) [-2277.185] (-2278.605) (-2272.808) -- 0:06:43
524000 -- (-2280.581) (-2265.931) [-2269.118] (-2275.130) * (-2275.128) [-2272.949] (-2285.415) (-2257.664) -- 0:06:42
525000 -- (-2280.598) (-2256.372) [-2261.857] (-2271.517) * (-2273.010) (-2273.422) (-2264.044) [-2259.281] -- 0:06:41
Average standard deviation of split frequencies: 0.012121
526000 -- [-2274.399] (-2271.772) (-2282.251) (-2285.653) * (-2275.556) (-2266.913) (-2280.757) [-2260.727] -- 0:06:41
527000 -- (-2286.023) [-2276.605] (-2260.880) (-2282.323) * (-2271.369) [-2272.702] (-2260.665) (-2284.053) -- 0:06:39
528000 -- (-2281.117) (-2282.183) [-2269.333] (-2281.113) * (-2282.059) (-2259.564) [-2271.763] (-2282.836) -- 0:06:38
529000 -- (-2277.286) (-2280.918) [-2263.517] (-2280.326) * (-2276.332) [-2257.055] (-2268.160) (-2266.922) -- 0:06:37
530000 -- (-2284.392) (-2271.904) [-2278.181] (-2280.772) * (-2269.033) [-2274.632] (-2275.876) (-2275.573) -- 0:06:37
Average standard deviation of split frequencies: 0.011992
531000 -- (-2276.019) [-2254.692] (-2275.857) (-2261.459) * (-2267.705) (-2277.760) [-2270.263] (-2278.853) -- 0:06:36
532000 -- (-2279.445) (-2274.580) (-2273.833) [-2263.376] * (-2271.877) (-2290.418) (-2261.926) [-2276.090] -- 0:06:35
533000 -- [-2278.160] (-2267.298) (-2275.374) (-2258.324) * (-2279.549) (-2289.291) (-2262.790) [-2275.167] -- 0:06:34
534000 -- (-2267.189) [-2274.165] (-2273.555) (-2269.811) * (-2283.498) (-2282.416) [-2263.619] (-2283.762) -- 0:06:33
535000 -- (-2262.320) (-2280.414) (-2277.836) [-2260.498] * (-2268.146) (-2278.837) [-2262.042] (-2269.283) -- 0:06:32
Average standard deviation of split frequencies: 0.011961
536000 -- [-2267.784] (-2276.034) (-2278.704) (-2262.823) * [-2263.919] (-2274.241) (-2283.879) (-2274.521) -- 0:06:32
537000 -- (-2260.748) (-2294.133) (-2278.755) [-2282.779] * (-2268.261) (-2279.252) (-2263.937) [-2269.937] -- 0:06:31
538000 -- [-2260.778] (-2295.778) (-2266.279) (-2284.160) * (-2275.450) (-2280.241) [-2263.405] (-2267.612) -- 0:06:30
539000 -- [-2255.046] (-2274.103) (-2273.191) (-2277.645) * (-2272.902) (-2264.505) (-2279.799) [-2273.430] -- 0:06:29
540000 -- (-2260.975) (-2259.828) (-2289.024) [-2260.799] * [-2272.378] (-2254.050) (-2280.565) (-2279.187) -- 0:06:28
Average standard deviation of split frequencies: 0.011836
541000 -- (-2266.391) [-2254.886] (-2285.639) (-2269.961) * (-2275.001) [-2275.115] (-2305.615) (-2269.032) -- 0:06:27
542000 -- (-2284.505) (-2270.208) [-2261.913] (-2277.163) * (-2271.106) [-2262.954] (-2274.573) (-2273.090) -- 0:06:27
543000 -- (-2281.047) (-2278.438) (-2268.080) [-2265.377] * (-2267.743) [-2249.214] (-2290.808) (-2288.864) -- 0:06:26
544000 -- (-2268.233) (-2271.792) (-2265.558) [-2266.948] * (-2270.019) [-2275.163] (-2287.721) (-2282.686) -- 0:06:25
545000 -- (-2270.308) (-2276.997) [-2274.919] (-2281.511) * [-2261.277] (-2277.278) (-2276.303) (-2273.674) -- 0:06:24
Average standard deviation of split frequencies: 0.011310
546000 -- [-2272.293] (-2280.005) (-2256.688) (-2278.587) * (-2260.957) (-2267.649) [-2260.907] (-2277.445) -- 0:06:23
547000 -- (-2273.547) (-2287.558) [-2263.292] (-2279.914) * (-2265.462) (-2278.434) [-2265.254] (-2257.303) -- 0:06:22
548000 -- (-2261.313) (-2265.107) (-2281.187) [-2272.215] * [-2274.437] (-2281.819) (-2267.524) (-2286.240) -- 0:06:21
549000 -- [-2255.752] (-2262.598) (-2272.120) (-2268.187) * (-2258.379) (-2283.675) [-2265.689] (-2277.225) -- 0:06:21
550000 -- (-2263.818) (-2289.672) [-2258.717] (-2265.204) * [-2265.518] (-2274.655) (-2281.125) (-2263.055) -- 0:06:20
Average standard deviation of split frequencies: 0.010628
551000 -- [-2265.290] (-2272.611) (-2264.532) (-2277.246) * (-2275.588) (-2265.601) [-2265.019] (-2277.318) -- 0:06:19
552000 -- [-2262.977] (-2264.085) (-2279.268) (-2271.814) * (-2279.171) (-2261.968) [-2269.759] (-2273.960) -- 0:06:18
553000 -- (-2277.389) (-2281.895) [-2280.364] (-2276.170) * (-2289.589) (-2275.100) (-2267.945) [-2265.993] -- 0:06:17
554000 -- (-2278.805) (-2269.877) (-2269.291) [-2260.662] * (-2276.756) [-2269.794] (-2287.911) (-2269.104) -- 0:06:16
555000 -- (-2269.470) [-2261.267] (-2285.295) (-2267.639) * [-2280.159] (-2274.032) (-2263.874) (-2268.903) -- 0:06:16
Average standard deviation of split frequencies: 0.010671
556000 -- (-2275.235) [-2260.499] (-2264.361) (-2270.554) * (-2288.978) (-2268.456) (-2279.931) [-2266.600] -- 0:06:15
557000 -- (-2274.312) (-2276.756) (-2271.847) [-2269.743] * [-2273.091] (-2274.746) (-2267.732) (-2275.514) -- 0:06:14
558000 -- [-2266.112] (-2283.023) (-2266.327) (-2271.652) * (-2263.994) [-2267.751] (-2265.028) (-2273.061) -- 0:06:13
559000 -- [-2263.591] (-2294.677) (-2277.877) (-2261.820) * (-2273.735) (-2268.662) [-2272.991] (-2274.430) -- 0:06:13
560000 -- [-2272.320] (-2272.258) (-2277.346) (-2276.092) * (-2272.052) [-2261.578] (-2279.768) (-2291.146) -- 0:06:11
Average standard deviation of split frequencies: 0.011498
561000 -- (-2284.228) [-2261.956] (-2268.904) (-2264.490) * (-2289.169) [-2257.329] (-2262.862) (-2276.405) -- 0:06:10
562000 -- (-2267.944) [-2263.271] (-2278.300) (-2262.698) * (-2271.582) (-2266.540) [-2269.232] (-2282.068) -- 0:06:10
563000 -- (-2278.151) (-2271.145) (-2280.974) [-2257.878] * [-2268.999] (-2276.527) (-2254.424) (-2256.691) -- 0:06:09
564000 -- (-2266.996) (-2277.558) (-2257.218) [-2260.514] * [-2264.837] (-2275.761) (-2260.843) (-2273.906) -- 0:06:08
565000 -- (-2271.066) (-2265.416) [-2257.354] (-2277.256) * [-2273.439] (-2287.801) (-2267.423) (-2273.471) -- 0:06:08
Average standard deviation of split frequencies: 0.011181
566000 -- (-2274.363) [-2270.341] (-2262.705) (-2278.589) * (-2272.740) (-2288.585) (-2260.952) [-2261.978] -- 0:06:06
567000 -- (-2274.007) (-2273.896) [-2271.077] (-2272.468) * (-2257.538) [-2258.846] (-2272.546) (-2273.438) -- 0:06:05
568000 -- (-2279.074) (-2284.290) (-2286.684) [-2257.879] * (-2288.367) (-2269.969) (-2275.052) [-2259.454] -- 0:06:05
569000 -- (-2276.031) (-2285.210) (-2265.245) [-2266.901] * (-2285.107) (-2284.478) [-2273.430] (-2274.964) -- 0:06:04
570000 -- (-2280.264) (-2270.312) (-2265.866) [-2266.320] * (-2279.786) [-2276.313] (-2275.587) (-2270.177) -- 0:06:03
Average standard deviation of split frequencies: 0.010656
571000 -- (-2272.816) [-2258.940] (-2264.303) (-2273.347) * [-2258.248] (-2276.357) (-2263.408) (-2267.646) -- 0:06:02
572000 -- (-2280.282) (-2277.248) [-2271.063] (-2258.336) * (-2263.005) (-2270.632) (-2283.155) [-2264.633] -- 0:06:01
573000 -- [-2262.701] (-2276.416) (-2271.285) (-2266.761) * (-2268.374) (-2269.513) (-2262.758) [-2270.537] -- 0:06:00
574000 -- [-2264.317] (-2275.232) (-2273.042) (-2279.496) * (-2266.433) (-2261.175) [-2259.756] (-2264.234) -- 0:05:59
575000 -- (-2274.014) (-2280.431) [-2255.302] (-2270.008) * (-2285.131) (-2264.880) [-2275.610] (-2263.519) -- 0:05:59
Average standard deviation of split frequencies: 0.011130
576000 -- (-2278.872) [-2267.065] (-2262.640) (-2276.109) * (-2279.238) (-2264.725) [-2268.840] (-2297.817) -- 0:05:58
577000 -- (-2262.563) [-2273.116] (-2270.467) (-2262.418) * (-2275.572) (-2275.007) (-2284.110) [-2263.069] -- 0:05:57
578000 -- (-2277.103) [-2261.794] (-2272.190) (-2263.149) * (-2280.105) [-2272.361] (-2279.795) (-2270.374) -- 0:05:57
579000 -- (-2272.039) (-2288.236) [-2261.230] (-2269.015) * (-2267.596) [-2274.141] (-2302.118) (-2265.474) -- 0:05:55
580000 -- [-2264.721] (-2293.135) (-2264.984) (-2264.771) * (-2283.504) (-2276.236) (-2284.985) [-2263.086] -- 0:05:54
Average standard deviation of split frequencies: 0.011088
581000 -- (-2269.751) (-2264.397) (-2270.308) [-2269.579] * (-2265.645) (-2279.724) [-2260.908] (-2262.400) -- 0:05:54
582000 -- (-2281.229) [-2263.457] (-2258.251) (-2270.057) * (-2277.477) (-2267.960) (-2270.030) [-2262.137] -- 0:05:53
583000 -- [-2278.221] (-2260.422) (-2282.724) (-2264.416) * (-2283.436) [-2277.393] (-2274.328) (-2256.983) -- 0:05:52
584000 -- [-2269.148] (-2280.563) (-2284.328) (-2265.222) * [-2264.020] (-2275.814) (-2272.153) (-2272.968) -- 0:05:51
585000 -- [-2263.858] (-2287.637) (-2271.448) (-2263.833) * (-2264.880) (-2270.750) [-2268.457] (-2279.454) -- 0:05:51
Average standard deviation of split frequencies: 0.010693
586000 -- (-2275.247) [-2271.478] (-2279.775) (-2280.958) * (-2275.363) [-2268.118] (-2285.691) (-2257.952) -- 0:05:50
587000 -- (-2266.063) [-2261.082] (-2273.115) (-2268.621) * (-2270.469) (-2265.853) (-2267.626) [-2253.528] -- 0:05:49
588000 -- (-2270.505) (-2266.362) (-2297.683) [-2271.068] * (-2261.144) [-2277.830] (-2271.458) (-2278.380) -- 0:05:48
589000 -- (-2262.019) [-2264.785] (-2276.325) (-2278.945) * (-2266.845) (-2274.909) (-2273.575) [-2268.092] -- 0:05:47
590000 -- (-2281.588) [-2262.781] (-2291.628) (-2266.226) * (-2277.997) (-2264.126) [-2268.076] (-2271.194) -- 0:05:46
Average standard deviation of split frequencies: 0.009752
591000 -- [-2265.107] (-2277.326) (-2270.568) (-2286.612) * (-2280.243) (-2276.542) [-2264.787] (-2276.808) -- 0:05:46
592000 -- [-2256.478] (-2270.927) (-2276.837) (-2271.105) * (-2267.844) (-2264.614) (-2273.651) [-2272.903] -- 0:05:45
593000 -- (-2282.885) (-2280.875) [-2254.938] (-2285.991) * (-2273.683) [-2257.355] (-2276.062) (-2266.866) -- 0:05:44
594000 -- (-2262.823) (-2269.338) (-2261.448) [-2263.754] * [-2264.965] (-2277.649) (-2271.895) (-2263.350) -- 0:05:43
595000 -- [-2257.053] (-2264.747) (-2258.521) (-2265.088) * (-2255.291) (-2281.108) (-2258.959) [-2266.398] -- 0:05:42
Average standard deviation of split frequencies: 0.009491
596000 -- (-2280.928) [-2265.298] (-2280.189) (-2299.399) * [-2267.514] (-2261.797) (-2278.585) (-2268.085) -- 0:05:41
597000 -- (-2274.568) [-2268.905] (-2260.898) (-2278.405) * (-2258.408) [-2263.221] (-2273.565) (-2255.567) -- 0:05:40
598000 -- (-2263.930) [-2273.264] (-2280.353) (-2288.559) * (-2279.170) [-2266.172] (-2269.248) (-2270.473) -- 0:05:40
599000 -- (-2260.546) [-2264.616] (-2288.669) (-2289.123) * (-2270.576) [-2262.243] (-2270.738) (-2275.640) -- 0:05:39
600000 -- (-2265.551) [-2254.405] (-2286.977) (-2268.705) * (-2268.588) [-2263.233] (-2277.439) (-2262.805) -- 0:05:38
Average standard deviation of split frequencies: 0.010202
601000 -- (-2272.362) [-2261.779] (-2275.803) (-2276.743) * (-2274.226) [-2269.973] (-2262.988) (-2273.964) -- 0:05:37
602000 -- [-2283.188] (-2269.110) (-2281.656) (-2275.904) * (-2279.012) (-2277.517) (-2273.569) [-2274.180] -- 0:05:36
603000 -- [-2273.392] (-2276.772) (-2266.999) (-2275.647) * (-2268.392) (-2278.452) (-2273.548) [-2272.133] -- 0:05:35
604000 -- (-2271.747) (-2253.299) [-2276.429] (-2269.050) * (-2283.023) (-2277.655) (-2263.444) [-2271.756] -- 0:05:35
605000 -- (-2294.556) (-2261.008) (-2274.917) [-2257.634] * [-2263.270] (-2289.964) (-2276.900) (-2264.509) -- 0:05:34
Average standard deviation of split frequencies: 0.010321
606000 -- (-2279.814) (-2270.821) [-2275.887] (-2256.671) * (-2271.104) (-2260.907) (-2274.161) [-2264.602] -- 0:05:33
607000 -- (-2272.356) (-2259.600) (-2279.085) [-2268.199] * (-2262.449) (-2270.566) [-2274.712] (-2272.309) -- 0:05:32
608000 -- (-2277.712) (-2271.630) [-2261.152] (-2271.376) * (-2274.322) [-2276.797] (-2274.316) (-2278.122) -- 0:05:31
609000 -- (-2279.314) (-2263.237) [-2272.694] (-2287.866) * [-2271.832] (-2276.930) (-2277.342) (-2271.613) -- 0:05:30
610000 -- (-2273.610) (-2260.779) (-2265.423) [-2279.148] * [-2258.469] (-2280.806) (-2266.783) (-2290.338) -- 0:05:29
Average standard deviation of split frequencies: 0.009565
611000 -- (-2266.668) (-2264.534) (-2277.197) [-2273.181] * [-2267.021] (-2264.305) (-2257.709) (-2266.769) -- 0:05:29
612000 -- (-2294.562) (-2273.954) [-2268.506] (-2265.734) * [-2267.404] (-2284.664) (-2272.446) (-2285.373) -- 0:05:28
613000 -- [-2272.489] (-2264.552) (-2266.508) (-2262.415) * (-2276.012) (-2264.292) (-2264.394) [-2266.413] -- 0:05:27
614000 -- (-2285.794) (-2280.791) (-2287.688) [-2264.594] * (-2296.615) [-2267.046] (-2265.752) (-2273.496) -- 0:05:26
615000 -- (-2271.833) [-2270.854] (-2292.317) (-2267.275) * (-2278.944) (-2276.283) [-2271.549] (-2280.860) -- 0:05:25
Average standard deviation of split frequencies: 0.008885
616000 -- (-2262.806) [-2269.354] (-2276.870) (-2266.050) * (-2281.317) (-2267.894) [-2276.888] (-2305.288) -- 0:05:24
617000 -- [-2256.199] (-2264.398) (-2262.498) (-2274.541) * (-2270.828) [-2265.431] (-2282.490) (-2271.492) -- 0:05:24
618000 -- (-2256.882) (-2274.705) [-2268.669] (-2269.790) * (-2276.462) (-2281.854) (-2276.784) [-2271.751] -- 0:05:23
619000 -- [-2265.852] (-2271.165) (-2258.697) (-2273.987) * (-2268.291) (-2286.969) [-2264.907] (-2276.895) -- 0:05:21
620000 -- (-2269.635) (-2281.123) [-2264.738] (-2288.113) * (-2264.937) (-2277.949) (-2274.994) [-2269.063] -- 0:05:21
Average standard deviation of split frequencies: 0.008781
621000 -- [-2273.099] (-2291.823) (-2264.991) (-2275.535) * (-2269.623) (-2281.453) [-2266.436] (-2263.880) -- 0:05:20
622000 -- [-2273.359] (-2275.085) (-2261.026) (-2284.275) * [-2252.706] (-2285.811) (-2271.889) (-2279.238) -- 0:05:19
623000 -- (-2251.810) (-2263.170) [-2271.147] (-2272.463) * [-2264.673] (-2280.277) (-2263.990) (-2283.385) -- 0:05:18
624000 -- (-2269.554) (-2279.760) [-2270.508] (-2264.539) * (-2260.296) (-2262.940) [-2275.835] (-2293.244) -- 0:05:18
625000 -- (-2285.993) (-2280.473) [-2262.202] (-2275.314) * (-2271.546) [-2260.845] (-2264.152) (-2268.627) -- 0:05:16
Average standard deviation of split frequencies: 0.008504
626000 -- [-2258.636] (-2289.200) (-2265.671) (-2272.950) * (-2273.654) (-2267.320) (-2276.359) [-2266.227] -- 0:05:16
627000 -- (-2277.303) [-2272.222] (-2278.559) (-2260.683) * (-2277.716) [-2275.024] (-2280.540) (-2258.826) -- 0:05:15
628000 -- (-2278.610) (-2270.766) (-2276.119) [-2258.268] * (-2279.242) (-2263.132) (-2271.424) [-2266.435] -- 0:05:14
629000 -- (-2261.562) (-2282.062) [-2259.953] (-2271.911) * (-2271.982) (-2271.837) [-2272.014] (-2269.443) -- 0:05:13
630000 -- [-2261.984] (-2265.724) (-2278.788) (-2263.443) * [-2266.452] (-2284.196) (-2272.147) (-2288.130) -- 0:05:13
Average standard deviation of split frequencies: 0.008222
631000 -- [-2271.237] (-2271.177) (-2268.180) (-2276.142) * (-2275.140) (-2289.394) [-2260.749] (-2280.855) -- 0:05:11
632000 -- (-2266.006) [-2253.193] (-2270.022) (-2299.204) * (-2266.740) (-2291.899) [-2258.719] (-2276.687) -- 0:05:10
633000 -- (-2257.486) [-2259.372] (-2269.506) (-2273.457) * [-2259.970] (-2270.383) (-2268.392) (-2269.029) -- 0:05:10
634000 -- (-2279.610) (-2276.699) [-2267.932] (-2262.794) * (-2270.941) (-2265.281) (-2273.699) [-2260.347] -- 0:05:09
635000 -- [-2270.544] (-2268.389) (-2284.395) (-2275.689) * (-2281.403) [-2259.323] (-2271.993) (-2273.451) -- 0:05:08
Average standard deviation of split frequencies: 0.008045
636000 -- [-2262.599] (-2266.944) (-2278.151) (-2271.810) * (-2268.244) (-2270.123) (-2279.004) [-2252.214] -- 0:05:07
637000 -- (-2266.654) [-2258.015] (-2281.588) (-2262.669) * (-2270.747) [-2258.907] (-2274.778) (-2277.661) -- 0:05:07
638000 -- (-2271.963) [-2261.381] (-2268.217) (-2274.164) * (-2285.271) (-2267.588) [-2278.467] (-2284.360) -- 0:05:05
639000 -- (-2276.156) (-2267.445) [-2260.331] (-2272.775) * (-2277.836) [-2269.734] (-2301.921) (-2273.524) -- 0:05:05
640000 -- (-2270.823) [-2274.440] (-2276.478) (-2276.113) * [-2262.420] (-2261.002) (-2265.338) (-2283.032) -- 0:05:04
Average standard deviation of split frequencies: 0.007896
641000 -- (-2259.971) (-2263.452) [-2261.037] (-2273.135) * (-2267.503) (-2270.848) (-2280.746) [-2270.614] -- 0:05:03
642000 -- (-2272.001) (-2268.359) [-2269.517] (-2295.996) * (-2274.956) [-2262.564] (-2272.120) (-2284.131) -- 0:05:02
643000 -- [-2278.324] (-2271.521) (-2287.207) (-2296.567) * [-2266.043] (-2266.900) (-2276.542) (-2288.374) -- 0:05:02
644000 -- (-2265.690) [-2261.908] (-2282.407) (-2273.826) * (-2287.335) [-2261.101] (-2262.018) (-2271.613) -- 0:05:01
645000 -- (-2273.620) (-2262.061) (-2275.176) [-2272.294] * [-2263.426] (-2284.070) (-2263.524) (-2274.023) -- 0:05:00
Average standard deviation of split frequencies: 0.007724
646000 -- (-2272.018) (-2268.193) (-2286.086) [-2268.846] * (-2256.576) (-2266.820) [-2272.168] (-2283.025) -- 0:04:59
647000 -- [-2272.780] (-2271.574) (-2281.444) (-2258.655) * [-2277.675] (-2270.055) (-2262.100) (-2272.465) -- 0:04:58
648000 -- [-2263.653] (-2276.166) (-2270.344) (-2276.670) * (-2292.376) [-2270.804] (-2268.511) (-2261.476) -- 0:04:57
649000 -- (-2268.622) (-2272.351) [-2269.539] (-2279.014) * (-2279.553) [-2261.171] (-2290.435) (-2254.353) -- 0:04:56
650000 -- [-2268.497] (-2297.995) (-2278.252) (-2265.386) * (-2267.267) [-2272.153] (-2273.641) (-2262.324) -- 0:04:56
Average standard deviation of split frequencies: 0.007934
651000 -- [-2275.014] (-2282.891) (-2267.503) (-2270.686) * (-2273.146) (-2273.061) (-2272.009) [-2273.459] -- 0:04:55
652000 -- [-2275.300] (-2274.805) (-2267.848) (-2269.101) * (-2281.673) (-2263.466) (-2272.887) [-2270.558] -- 0:04:54
653000 -- (-2261.816) (-2268.722) [-2265.895] (-2271.965) * (-2278.562) [-2267.954] (-2274.574) (-2265.604) -- 0:04:53
654000 -- [-2266.368] (-2262.717) (-2277.966) (-2261.626) * (-2274.568) (-2278.606) (-2286.967) [-2267.900] -- 0:04:52
655000 -- (-2277.792) (-2268.449) [-2272.205] (-2276.704) * [-2265.694] (-2264.782) (-2296.325) (-2285.640) -- 0:04:51
Average standard deviation of split frequencies: 0.008343
656000 -- (-2274.753) (-2265.734) [-2266.057] (-2268.310) * (-2275.657) [-2269.467] (-2288.622) (-2271.226) -- 0:04:51
657000 -- [-2261.687] (-2269.338) (-2264.948) (-2284.188) * [-2260.637] (-2265.267) (-2280.973) (-2254.761) -- 0:04:50
658000 -- [-2267.931] (-2273.332) (-2283.910) (-2269.469) * [-2258.817] (-2286.928) (-2282.775) (-2273.339) -- 0:04:49
659000 -- (-2280.846) (-2261.968) (-2277.279) [-2273.221] * (-2275.030) (-2280.024) (-2294.856) [-2266.694] -- 0:04:48
660000 -- (-2269.179) (-2268.780) (-2275.654) [-2264.342] * (-2287.229) (-2284.862) (-2267.021) [-2264.200] -- 0:04:47
Average standard deviation of split frequencies: 0.008127
661000 -- (-2269.670) [-2260.862] (-2265.560) (-2278.344) * [-2276.231] (-2283.686) (-2265.019) (-2287.066) -- 0:04:47
662000 -- (-2267.316) (-2269.133) [-2259.875] (-2272.853) * (-2272.917) (-2280.171) (-2266.127) [-2265.114] -- 0:04:45
663000 -- (-2282.217) (-2263.621) (-2286.928) [-2254.738] * (-2267.358) (-2266.125) (-2274.988) [-2261.651] -- 0:04:45
664000 -- (-2284.955) (-2271.954) (-2281.440) [-2266.597] * (-2275.567) (-2284.275) (-2284.549) [-2262.297] -- 0:04:44
665000 -- [-2266.689] (-2269.245) (-2273.321) (-2273.853) * (-2271.364) [-2261.604] (-2278.108) (-2274.911) -- 0:04:43
Average standard deviation of split frequencies: 0.007751
666000 -- (-2276.439) [-2265.464] (-2287.402) (-2286.040) * [-2277.169] (-2272.786) (-2289.817) (-2263.217) -- 0:04:42
667000 -- (-2286.972) (-2280.772) (-2279.705) [-2276.880] * (-2274.656) (-2268.361) (-2271.983) [-2269.162] -- 0:04:42
668000 -- (-2264.943) (-2260.389) (-2283.947) [-2257.353] * (-2280.770) (-2267.879) (-2273.985) [-2267.174] -- 0:04:41
669000 -- (-2260.228) (-2262.665) (-2264.949) [-2256.373] * (-2284.776) (-2275.349) (-2278.229) [-2265.055] -- 0:04:40
670000 -- [-2261.007] (-2278.461) (-2270.320) (-2273.788) * (-2286.396) (-2262.523) (-2281.645) [-2253.744] -- 0:04:39
Average standard deviation of split frequencies: 0.007783
671000 -- [-2263.077] (-2269.907) (-2268.595) (-2258.458) * (-2277.434) [-2273.501] (-2264.701) (-2261.559) -- 0:04:38
672000 -- [-2275.706] (-2274.762) (-2298.387) (-2279.574) * (-2282.283) [-2261.194] (-2270.663) (-2274.915) -- 0:04:37
673000 -- [-2266.309] (-2272.604) (-2276.868) (-2275.548) * (-2272.124) [-2265.111] (-2272.333) (-2285.581) -- 0:04:36
674000 -- (-2251.633) [-2259.170] (-2282.051) (-2286.271) * (-2267.752) [-2257.605] (-2252.896) (-2269.914) -- 0:04:36
675000 -- [-2260.310] (-2264.924) (-2257.487) (-2278.537) * (-2274.573) (-2276.438) (-2261.889) [-2268.145] -- 0:04:34
Average standard deviation of split frequencies: 0.007705
676000 -- (-2275.553) (-2266.809) (-2272.407) [-2272.596] * (-2276.757) (-2273.707) (-2268.005) [-2263.569] -- 0:04:34
677000 -- (-2275.625) (-2269.155) [-2273.244] (-2266.177) * [-2265.306] (-2272.446) (-2285.634) (-2271.642) -- 0:04:33
678000 -- (-2262.276) (-2284.541) [-2261.246] (-2269.451) * (-2294.746) (-2268.126) [-2262.788] (-2281.763) -- 0:04:32
679000 -- (-2273.488) (-2263.248) [-2271.036] (-2266.780) * (-2271.529) (-2270.457) [-2265.682] (-2283.224) -- 0:04:31
680000 -- (-2268.582) (-2270.685) (-2277.371) [-2259.521] * (-2272.898) [-2257.973] (-2287.290) (-2278.546) -- 0:04:31
Average standard deviation of split frequencies: 0.007314
681000 -- (-2278.774) [-2276.961] (-2267.765) (-2270.866) * (-2276.434) (-2270.911) [-2264.135] (-2276.706) -- 0:04:29
682000 -- (-2272.010) [-2263.944] (-2268.404) (-2271.766) * (-2278.350) (-2271.267) (-2264.308) [-2263.173] -- 0:04:29
683000 -- (-2268.396) [-2272.595] (-2259.798) (-2265.285) * (-2280.507) (-2274.123) (-2280.888) [-2271.084] -- 0:04:28
684000 -- (-2263.040) (-2297.472) (-2278.377) [-2267.935] * [-2262.577] (-2274.960) (-2289.167) (-2264.433) -- 0:04:27
685000 -- (-2273.485) (-2267.713) [-2271.135] (-2287.085) * (-2280.257) (-2273.817) [-2270.881] (-2261.256) -- 0:04:26
Average standard deviation of split frequencies: 0.007181
686000 -- [-2279.601] (-2263.473) (-2272.059) (-2271.921) * (-2283.917) (-2265.545) [-2269.032] (-2261.454) -- 0:04:25
687000 -- (-2280.520) [-2260.856] (-2272.280) (-2269.425) * (-2279.561) (-2275.856) (-2264.323) [-2268.854] -- 0:04:25
688000 -- [-2261.601] (-2274.143) (-2274.801) (-2277.063) * (-2290.027) (-2267.279) (-2274.476) [-2270.005] -- 0:04:24
689000 -- (-2282.377) (-2260.496) (-2283.226) [-2262.362] * (-2282.204) [-2274.366] (-2286.754) (-2266.917) -- 0:04:23
690000 -- (-2276.497) [-2269.667] (-2281.328) (-2273.727) * (-2282.419) (-2266.431) [-2278.615] (-2260.025) -- 0:04:22
Average standard deviation of split frequencies: 0.006894
691000 -- (-2283.065) (-2271.667) (-2275.236) [-2269.219] * (-2277.866) [-2266.478] (-2262.835) (-2274.155) -- 0:04:21
692000 -- (-2269.926) (-2283.544) (-2286.917) [-2269.951] * (-2275.509) [-2263.189] (-2278.145) (-2268.127) -- 0:04:20
693000 -- [-2263.532] (-2278.306) (-2278.640) (-2266.769) * (-2275.609) (-2280.470) [-2273.678] (-2275.026) -- 0:04:20
694000 -- [-2261.402] (-2259.220) (-2262.697) (-2273.142) * [-2268.174] (-2265.193) (-2277.396) (-2274.793) -- 0:04:19
695000 -- [-2260.117] (-2273.856) (-2275.670) (-2286.414) * (-2279.555) (-2278.570) (-2271.719) [-2267.630] -- 0:04:18
Average standard deviation of split frequencies: 0.006807
696000 -- [-2258.641] (-2267.936) (-2296.162) (-2273.158) * [-2269.612] (-2267.693) (-2273.402) (-2277.050) -- 0:04:17
697000 -- (-2274.116) (-2264.646) [-2265.187] (-2263.554) * (-2282.302) [-2277.661] (-2264.343) (-2281.852) -- 0:04:16
698000 -- (-2269.804) (-2265.381) [-2265.757] (-2271.635) * (-2272.798) (-2279.000) [-2270.267] (-2269.195) -- 0:04:15
699000 -- (-2278.600) [-2258.679] (-2271.892) (-2264.355) * (-2268.076) (-2282.969) (-2270.487) [-2256.839] -- 0:04:14
700000 -- (-2275.954) (-2276.412) (-2262.126) [-2271.172] * (-2257.753) (-2288.765) [-2272.762] (-2269.729) -- 0:04:14
Average standard deviation of split frequencies: 0.006896
701000 -- (-2271.659) (-2277.142) (-2268.271) [-2268.093] * [-2265.428] (-2285.335) (-2261.675) (-2273.796) -- 0:04:13
702000 -- (-2276.131) (-2271.058) (-2272.738) [-2265.051] * (-2292.290) (-2284.689) [-2265.768] (-2260.999) -- 0:04:12
703000 -- (-2270.748) [-2267.337] (-2279.136) (-2289.519) * (-2291.019) (-2273.216) (-2275.329) [-2261.688] -- 0:04:11
704000 -- (-2265.714) [-2277.673] (-2279.845) (-2271.531) * (-2269.478) (-2291.047) (-2269.566) [-2272.995] -- 0:04:10
705000 -- (-2275.036) (-2290.819) [-2267.697] (-2272.197) * (-2279.051) (-2278.729) (-2277.622) [-2267.558] -- 0:04:09
Average standard deviation of split frequencies: 0.006978
706000 -- (-2273.910) (-2280.185) (-2276.845) [-2262.362] * [-2267.728] (-2285.075) (-2264.449) (-2268.216) -- 0:04:09
707000 -- (-2272.329) (-2280.077) (-2284.551) [-2257.239] * [-2269.142] (-2276.162) (-2262.110) (-2277.837) -- 0:04:08
708000 -- [-2275.941] (-2280.099) (-2277.907) (-2263.837) * (-2270.949) [-2270.808] (-2271.255) (-2274.736) -- 0:04:07
709000 -- (-2275.726) (-2276.853) [-2264.087] (-2285.550) * [-2266.142] (-2283.230) (-2266.204) (-2272.529) -- 0:04:06
710000 -- (-2285.589) (-2271.255) (-2267.922) [-2278.768] * [-2257.068] (-2274.372) (-2270.361) (-2267.467) -- 0:04:05
Average standard deviation of split frequencies: 0.006816
711000 -- [-2270.407] (-2272.931) (-2281.640) (-2271.187) * (-2279.017) (-2261.418) (-2280.088) [-2261.277] -- 0:04:04
712000 -- (-2264.087) [-2262.175] (-2274.571) (-2279.633) * (-2278.494) [-2271.516] (-2274.533) (-2286.283) -- 0:04:03
713000 -- (-2266.332) [-2261.529] (-2266.984) (-2266.254) * (-2285.125) (-2273.247) (-2271.880) [-2261.657] -- 0:04:03
714000 -- (-2265.680) (-2270.666) (-2300.629) [-2277.845] * (-2283.260) (-2265.831) [-2258.667] (-2267.009) -- 0:04:02
715000 -- (-2263.020) (-2261.735) (-2276.245) [-2262.650] * (-2283.530) (-2269.260) [-2266.791] (-2265.347) -- 0:04:01
Average standard deviation of split frequencies: 0.006798
716000 -- [-2272.851] (-2276.076) (-2280.010) (-2261.172) * (-2276.337) (-2268.523) [-2266.822] (-2275.740) -- 0:04:00
717000 -- [-2267.361] (-2276.641) (-2282.209) (-2274.047) * (-2273.347) [-2258.364] (-2276.666) (-2286.341) -- 0:03:59
718000 -- (-2277.708) [-2259.846] (-2281.823) (-2279.998) * (-2262.852) [-2256.155] (-2271.453) (-2276.671) -- 0:03:58
719000 -- (-2276.979) [-2264.390] (-2275.595) (-2270.512) * (-2267.591) (-2271.409) [-2269.827] (-2289.645) -- 0:03:58
720000 -- (-2280.379) [-2261.070] (-2273.181) (-2291.915) * [-2267.665] (-2276.103) (-2270.614) (-2277.135) -- 0:03:56
Average standard deviation of split frequencies: 0.006843
721000 -- (-2260.056) (-2286.136) [-2262.244] (-2288.255) * [-2263.901] (-2275.029) (-2281.330) (-2274.736) -- 0:03:56
722000 -- [-2261.493] (-2264.985) (-2259.187) (-2277.854) * [-2265.231] (-2284.284) (-2278.807) (-2265.174) -- 0:03:55
723000 -- (-2275.204) (-2276.004) [-2266.023] (-2282.393) * (-2267.689) (-2271.882) (-2267.131) [-2271.763] -- 0:03:54
724000 -- (-2280.580) (-2273.091) [-2257.417] (-2273.968) * (-2288.900) (-2284.781) (-2275.045) [-2276.405] -- 0:03:53
725000 -- [-2267.675] (-2273.357) (-2268.704) (-2273.040) * [-2269.791] (-2281.346) (-2271.446) (-2287.943) -- 0:03:52
Average standard deviation of split frequencies: 0.006572
726000 -- (-2273.094) [-2258.358] (-2283.588) (-2283.084) * (-2278.429) (-2265.275) (-2271.982) [-2271.165] -- 0:03:51
727000 -- (-2276.417) [-2263.516] (-2295.293) (-2267.493) * (-2276.224) [-2262.039] (-2272.382) (-2276.533) -- 0:03:50
728000 -- (-2265.745) [-2265.137] (-2284.234) (-2271.129) * (-2280.145) (-2271.655) [-2271.331] (-2273.039) -- 0:03:50
729000 -- (-2278.738) (-2268.645) (-2259.395) [-2265.439] * [-2265.924] (-2278.213) (-2281.451) (-2266.242) -- 0:03:49
730000 -- (-2277.798) (-2264.863) (-2257.919) [-2262.160] * (-2273.794) (-2269.093) [-2276.420] (-2266.695) -- 0:03:48
Average standard deviation of split frequencies: 0.006849
731000 -- (-2293.009) (-2261.697) (-2270.250) [-2265.531] * (-2286.021) (-2266.154) (-2283.835) [-2259.570] -- 0:03:47
732000 -- [-2276.611] (-2266.458) (-2269.314) (-2270.981) * [-2266.967] (-2275.038) (-2269.002) (-2280.268) -- 0:03:46
733000 -- (-2286.939) [-2272.182] (-2272.846) (-2274.098) * (-2268.969) [-2267.662] (-2276.532) (-2277.886) -- 0:03:45
734000 -- (-2283.868) [-2264.002] (-2270.426) (-2267.298) * [-2259.084] (-2256.305) (-2268.242) (-2276.312) -- 0:03:45
735000 -- (-2255.752) (-2273.278) [-2256.459] (-2296.560) * [-2263.638] (-2281.129) (-2264.125) (-2289.241) -- 0:03:44
Average standard deviation of split frequencies: 0.006947
736000 -- [-2258.761] (-2267.888) (-2283.941) (-2278.421) * (-2283.879) (-2276.344) [-2268.907] (-2280.270) -- 0:03:43
737000 -- (-2267.951) [-2263.914] (-2290.170) (-2278.557) * (-2283.010) [-2271.422] (-2286.165) (-2274.542) -- 0:03:42
738000 -- (-2268.717) (-2280.020) (-2280.061) [-2269.534] * (-2274.654) (-2281.293) (-2272.325) [-2266.024] -- 0:03:41
739000 -- (-2271.877) [-2270.050] (-2265.178) (-2267.603) * (-2268.343) [-2267.572] (-2279.445) (-2270.238) -- 0:03:40
740000 -- (-2276.270) (-2275.192) (-2265.556) [-2255.704] * (-2271.350) (-2272.545) [-2258.182] (-2280.016) -- 0:03:39
Average standard deviation of split frequencies: 0.007197
741000 -- (-2280.580) (-2272.436) [-2266.673] (-2262.211) * [-2274.129] (-2279.711) (-2261.822) (-2284.629) -- 0:03:39
742000 -- (-2275.424) (-2277.000) [-2256.219] (-2269.622) * (-2270.743) (-2273.685) [-2262.884] (-2268.985) -- 0:03:38
743000 -- (-2274.134) (-2277.702) [-2266.082] (-2251.554) * [-2256.555] (-2283.706) (-2270.368) (-2277.165) -- 0:03:37
744000 -- (-2289.338) (-2258.849) (-2279.546) [-2268.554] * (-2259.936) (-2275.227) [-2279.182] (-2275.017) -- 0:03:36
745000 -- [-2266.822] (-2275.964) (-2273.621) (-2270.723) * (-2275.932) (-2269.854) [-2264.855] (-2256.755) -- 0:03:35
Average standard deviation of split frequencies: 0.007664
746000 -- [-2258.475] (-2278.220) (-2280.242) (-2271.383) * (-2267.399) (-2278.757) [-2269.874] (-2274.926) -- 0:03:34
747000 -- [-2263.311] (-2279.506) (-2272.617) (-2253.573) * (-2277.496) (-2271.163) [-2270.605] (-2270.731) -- 0:03:34
748000 -- (-2272.200) (-2266.663) (-2269.551) [-2254.989] * [-2258.886] (-2274.191) (-2280.605) (-2281.952) -- 0:03:33
749000 -- (-2273.447) (-2274.838) (-2279.331) [-2267.699] * (-2265.262) (-2270.882) (-2265.679) [-2263.807] -- 0:03:32
750000 -- (-2257.926) [-2272.269] (-2271.816) (-2280.424) * [-2285.405] (-2274.063) (-2269.999) (-2268.973) -- 0:03:31
Average standard deviation of split frequencies: 0.007504
751000 -- (-2269.314) (-2282.158) [-2258.962] (-2275.208) * (-2281.748) [-2264.483] (-2274.210) (-2266.317) -- 0:03:30
752000 -- (-2269.272) (-2270.470) [-2261.090] (-2280.462) * [-2274.536] (-2269.905) (-2280.416) (-2269.103) -- 0:03:29
753000 -- (-2271.743) (-2287.635) (-2255.989) [-2264.179] * (-2268.973) (-2271.602) [-2267.954] (-2281.670) -- 0:03:28
754000 -- (-2258.166) (-2289.180) [-2272.118] (-2262.680) * (-2279.522) (-2282.483) [-2264.838] (-2274.267) -- 0:03:28
755000 -- (-2281.056) (-2274.663) [-2270.554] (-2267.337) * (-2253.752) [-2261.184] (-2273.198) (-2279.225) -- 0:03:27
Average standard deviation of split frequencies: 0.007642
756000 -- [-2261.559] (-2273.786) (-2286.671) (-2265.988) * [-2263.377] (-2278.155) (-2272.848) (-2265.465) -- 0:03:26
757000 -- (-2271.326) (-2286.500) (-2266.678) [-2258.017] * (-2271.363) [-2277.414] (-2278.300) (-2265.494) -- 0:03:25
758000 -- (-2271.509) (-2267.143) [-2260.028] (-2262.410) * (-2269.566) (-2279.607) [-2267.948] (-2266.726) -- 0:03:24
759000 -- (-2256.383) (-2271.511) (-2274.466) [-2270.241] * (-2273.051) (-2272.937) (-2277.907) [-2264.518] -- 0:03:23
760000 -- [-2277.864] (-2277.239) (-2273.832) (-2272.485) * (-2275.206) [-2268.052] (-2279.169) (-2266.043) -- 0:03:23
Average standard deviation of split frequencies: 0.008358
761000 -- (-2276.288) (-2288.174) [-2260.451] (-2295.023) * (-2264.347) [-2265.676] (-2271.918) (-2282.442) -- 0:03:22
762000 -- (-2265.047) (-2289.133) [-2261.296] (-2272.431) * (-2264.042) (-2277.456) [-2276.510] (-2277.273) -- 0:03:21
763000 -- [-2267.017] (-2263.553) (-2275.518) (-2277.370) * [-2266.822] (-2273.979) (-2269.033) (-2268.892) -- 0:03:20
764000 -- (-2279.949) (-2277.553) (-2264.181) [-2274.936] * (-2269.645) [-2272.884] (-2272.164) (-2268.705) -- 0:03:19
765000 -- (-2278.342) (-2270.342) [-2275.767] (-2277.052) * (-2269.997) (-2258.589) [-2278.187] (-2269.921) -- 0:03:18
Average standard deviation of split frequencies: 0.007716
766000 -- (-2274.181) (-2278.496) (-2269.686) [-2291.379] * [-2270.939] (-2270.804) (-2296.170) (-2270.897) -- 0:03:17
767000 -- (-2277.492) (-2265.124) [-2271.009] (-2263.496) * (-2265.934) [-2269.744] (-2282.063) (-2278.111) -- 0:03:17
768000 -- (-2274.287) (-2278.418) (-2274.133) [-2260.999] * (-2280.059) (-2281.169) (-2268.617) [-2274.360] -- 0:03:16
769000 -- (-2272.150) (-2272.617) [-2276.741] (-2273.938) * (-2281.882) (-2285.749) (-2269.570) [-2264.963] -- 0:03:15
770000 -- (-2270.614) [-2266.643] (-2282.548) (-2279.257) * (-2274.313) (-2269.085) [-2262.079] (-2262.770) -- 0:03:14
Average standard deviation of split frequencies: 0.007623
771000 -- (-2267.686) [-2263.457] (-2269.561) (-2277.601) * [-2276.951] (-2262.682) (-2273.059) (-2271.134) -- 0:03:13
772000 -- (-2265.596) (-2275.899) (-2289.940) [-2272.173] * [-2275.823] (-2259.737) (-2271.754) (-2287.888) -- 0:03:12
773000 -- (-2267.541) (-2282.232) (-2276.688) [-2266.644] * (-2274.594) (-2275.878) (-2278.903) [-2262.992] -- 0:03:12
774000 -- (-2272.770) [-2276.940] (-2272.823) (-2282.981) * [-2268.198] (-2268.146) (-2273.402) (-2279.868) -- 0:03:11
775000 -- [-2257.459] (-2258.631) (-2265.857) (-2291.290) * [-2270.581] (-2276.652) (-2267.649) (-2288.555) -- 0:03:10
Average standard deviation of split frequencies: 0.007617
776000 -- (-2264.420) [-2259.021] (-2288.340) (-2266.158) * (-2260.167) (-2278.481) [-2279.310] (-2268.440) -- 0:03:09
777000 -- (-2264.101) [-2269.228] (-2276.478) (-2278.192) * (-2284.045) (-2268.341) (-2277.146) [-2267.718] -- 0:03:08
778000 -- (-2275.330) [-2257.425] (-2282.898) (-2269.873) * (-2274.593) (-2280.817) (-2282.865) [-2258.332] -- 0:03:07
779000 -- (-2285.209) [-2252.744] (-2272.694) (-2258.934) * (-2275.551) (-2281.287) (-2271.685) [-2259.155] -- 0:03:06
780000 -- (-2277.695) (-2269.298) [-2266.765] (-2279.615) * (-2280.981) (-2286.822) (-2271.505) [-2270.212] -- 0:03:06
Average standard deviation of split frequencies: 0.007804
781000 -- [-2267.911] (-2280.524) (-2275.124) (-2270.790) * (-2275.168) [-2260.682] (-2278.037) (-2281.306) -- 0:03:05
782000 -- [-2266.690] (-2273.433) (-2296.889) (-2266.144) * (-2261.369) [-2259.617] (-2287.128) (-2274.513) -- 0:03:04
783000 -- (-2263.029) [-2270.576] (-2285.206) (-2278.356) * (-2262.164) (-2272.299) (-2271.423) [-2265.940] -- 0:03:03
784000 -- (-2277.682) [-2262.001] (-2278.223) (-2271.616) * (-2268.285) [-2281.942] (-2285.700) (-2258.930) -- 0:03:02
785000 -- (-2268.347) (-2265.182) (-2282.773) [-2276.297] * (-2264.152) (-2264.489) (-2272.282) [-2266.516] -- 0:03:01
Average standard deviation of split frequencies: 0.007658
786000 -- (-2278.943) (-2260.460) [-2262.593] (-2270.838) * (-2287.678) [-2255.461] (-2264.331) (-2278.870) -- 0:03:01
787000 -- [-2269.960] (-2265.720) (-2275.828) (-2268.496) * (-2282.560) (-2269.164) [-2269.271] (-2262.805) -- 0:03:00
788000 -- (-2268.326) [-2260.904] (-2270.637) (-2276.766) * [-2276.327] (-2262.536) (-2275.322) (-2253.047) -- 0:02:59
789000 -- (-2275.079) (-2267.591) [-2264.706] (-2278.273) * (-2280.487) (-2262.039) (-2286.700) [-2254.593] -- 0:02:58
790000 -- (-2277.506) [-2265.915] (-2277.278) (-2284.212) * (-2267.559) [-2255.663] (-2275.508) (-2280.623) -- 0:02:57
Average standard deviation of split frequencies: 0.007430
791000 -- (-2270.311) (-2272.364) [-2257.352] (-2285.877) * [-2269.536] (-2274.810) (-2265.407) (-2285.260) -- 0:02:56
792000 -- (-2278.825) (-2272.518) [-2271.070] (-2264.151) * (-2280.849) (-2280.599) [-2263.808] (-2280.435) -- 0:02:56
793000 -- (-2274.608) (-2271.553) [-2272.099] (-2266.990) * (-2272.868) [-2266.570] (-2275.966) (-2270.808) -- 0:02:55
794000 -- (-2281.166) (-2262.270) (-2281.633) [-2257.803] * [-2271.330] (-2280.810) (-2259.208) (-2286.672) -- 0:02:54
795000 -- [-2277.304] (-2268.416) (-2267.591) (-2276.738) * [-2277.676] (-2290.050) (-2267.103) (-2272.561) -- 0:02:53
Average standard deviation of split frequencies: 0.007091
796000 -- (-2270.655) [-2264.341] (-2268.966) (-2270.733) * (-2282.533) [-2262.553] (-2290.757) (-2272.983) -- 0:02:52
797000 -- [-2267.889] (-2268.852) (-2279.350) (-2274.298) * [-2268.515] (-2270.734) (-2284.375) (-2265.092) -- 0:02:51
798000 -- (-2273.569) [-2256.827] (-2269.247) (-2265.802) * (-2291.173) (-2287.445) (-2275.938) [-2271.796] -- 0:02:51
799000 -- (-2274.953) (-2279.175) [-2260.133] (-2260.340) * [-2266.840] (-2271.507) (-2276.460) (-2293.667) -- 0:02:50
800000 -- (-2272.939) (-2274.393) (-2282.180) [-2272.630] * (-2271.304) (-2271.289) [-2265.184] (-2276.264) -- 0:02:49
Average standard deviation of split frequencies: 0.006869
801000 -- [-2271.459] (-2281.743) (-2260.046) (-2259.362) * [-2272.915] (-2266.890) (-2281.762) (-2283.320) -- 0:02:48
802000 -- [-2274.739] (-2267.666) (-2269.548) (-2277.812) * (-2274.942) (-2276.480) (-2291.562) [-2270.980] -- 0:02:47
803000 -- (-2275.118) (-2265.312) [-2264.380] (-2273.821) * (-2265.927) (-2279.555) (-2281.506) [-2259.330] -- 0:02:46
804000 -- [-2254.432] (-2275.901) (-2282.456) (-2266.034) * [-2268.972] (-2265.123) (-2284.477) (-2277.177) -- 0:02:46
805000 -- (-2273.538) (-2280.264) (-2268.463) [-2274.202] * (-2273.233) (-2269.756) [-2271.740] (-2265.208) -- 0:02:45
Average standard deviation of split frequencies: 0.006823
806000 -- (-2294.206) (-2268.606) (-2270.121) [-2259.798] * (-2281.039) [-2264.665] (-2277.299) (-2268.903) -- 0:02:44
807000 -- (-2283.186) (-2271.821) [-2270.299] (-2263.690) * (-2273.884) [-2260.985] (-2275.602) (-2276.799) -- 0:02:43
808000 -- (-2264.454) (-2273.076) [-2261.917] (-2279.271) * (-2271.788) [-2264.761] (-2266.111) (-2277.950) -- 0:02:42
809000 -- [-2267.443] (-2271.140) (-2282.504) (-2284.728) * (-2276.049) [-2268.264] (-2290.832) (-2275.481) -- 0:02:41
810000 -- (-2271.556) (-2270.175) (-2277.322) [-2270.075] * (-2262.981) (-2280.879) (-2273.247) [-2279.053] -- 0:02:40
Average standard deviation of split frequencies: 0.006561
811000 -- (-2269.272) [-2257.532] (-2258.867) (-2285.880) * (-2269.129) [-2277.972] (-2268.266) (-2270.747) -- 0:02:40
812000 -- (-2267.812) (-2265.030) (-2266.843) [-2276.903] * (-2281.567) (-2270.987) [-2277.855] (-2290.882) -- 0:02:39
813000 -- [-2262.388] (-2271.548) (-2272.235) (-2278.660) * (-2279.433) (-2265.649) [-2261.512] (-2271.922) -- 0:02:38
814000 -- (-2280.187) [-2252.182] (-2269.415) (-2273.477) * (-2272.144) (-2269.681) (-2269.249) [-2267.597] -- 0:02:37
815000 -- (-2287.544) (-2272.023) [-2260.388] (-2279.949) * [-2260.130] (-2268.757) (-2274.617) (-2265.864) -- 0:02:36
Average standard deviation of split frequencies: 0.006644
816000 -- [-2287.759] (-2288.583) (-2273.293) (-2265.261) * [-2260.353] (-2270.898) (-2281.305) (-2283.105) -- 0:02:35
817000 -- (-2278.724) [-2278.690] (-2266.640) (-2276.278) * (-2270.006) (-2284.095) (-2268.866) [-2261.886] -- 0:02:35
818000 -- [-2262.967] (-2279.642) (-2264.006) (-2267.801) * (-2283.532) (-2283.464) (-2269.797) [-2270.431] -- 0:02:34
819000 -- (-2262.775) [-2266.977] (-2269.191) (-2272.096) * (-2271.425) [-2259.074] (-2285.040) (-2263.729) -- 0:02:33
820000 -- (-2303.178) [-2266.244] (-2266.228) (-2273.409) * (-2265.474) [-2267.086] (-2276.476) (-2274.160) -- 0:02:32
Average standard deviation of split frequencies: 0.006702
821000 -- (-2280.259) (-2266.635) (-2277.605) [-2257.458] * (-2282.891) [-2262.981] (-2269.849) (-2268.619) -- 0:02:31
822000 -- (-2277.260) [-2268.269] (-2265.339) (-2267.287) * (-2288.804) (-2265.969) [-2260.014] (-2274.152) -- 0:02:30
823000 -- (-2274.688) (-2276.101) [-2256.868] (-2264.479) * (-2287.247) [-2259.758] (-2255.912) (-2262.092) -- 0:02:29
824000 -- (-2271.118) (-2281.521) [-2269.557] (-2261.218) * (-2262.254) (-2278.564) [-2275.371] (-2277.502) -- 0:02:29
825000 -- (-2274.820) (-2287.327) (-2278.059) [-2258.522] * (-2271.552) (-2281.298) (-2266.629) [-2276.095] -- 0:02:28
Average standard deviation of split frequencies: 0.006848
826000 -- [-2257.039] (-2264.237) (-2267.722) (-2264.285) * (-2265.047) (-2273.040) [-2260.328] (-2267.789) -- 0:02:27
827000 -- (-2277.603) [-2274.763] (-2275.065) (-2269.313) * (-2282.001) (-2280.186) [-2257.571] (-2264.603) -- 0:02:26
828000 -- (-2285.257) (-2270.361) (-2262.531) [-2256.778] * (-2277.411) (-2268.791) [-2265.932] (-2271.387) -- 0:02:25
829000 -- (-2281.104) (-2260.481) (-2277.538) [-2266.617] * (-2271.452) (-2263.434) [-2261.200] (-2264.245) -- 0:02:24
830000 -- [-2265.703] (-2263.372) (-2275.768) (-2269.659) * (-2282.923) [-2262.026] (-2276.405) (-2278.863) -- 0:02:23
Average standard deviation of split frequencies: 0.006938
831000 -- [-2259.594] (-2264.625) (-2272.901) (-2287.341) * (-2285.716) [-2275.582] (-2285.240) (-2259.640) -- 0:02:22
832000 -- (-2263.766) (-2269.368) [-2270.213] (-2270.251) * (-2277.087) (-2274.239) [-2259.131] (-2274.849) -- 0:02:22
833000 -- (-2274.964) (-2289.095) (-2264.033) [-2270.264] * [-2270.183] (-2274.129) (-2277.528) (-2265.047) -- 0:02:21
834000 -- (-2287.206) (-2266.120) [-2266.369] (-2273.220) * (-2261.955) (-2268.882) (-2269.137) [-2265.735] -- 0:02:20
835000 -- [-2265.321] (-2275.029) (-2274.720) (-2278.832) * (-2260.433) [-2266.110] (-2273.710) (-2263.712) -- 0:02:19
Average standard deviation of split frequencies: 0.007175
836000 -- (-2276.208) [-2257.872] (-2271.863) (-2278.599) * (-2267.903) (-2287.167) [-2255.332] (-2266.438) -- 0:02:18
837000 -- (-2279.640) [-2266.160] (-2266.402) (-2275.961) * (-2281.757) (-2272.952) [-2271.016] (-2276.624) -- 0:02:17
838000 -- (-2273.748) (-2268.284) [-2270.899] (-2275.722) * (-2272.682) (-2282.743) [-2278.312] (-2272.585) -- 0:02:17
839000 -- (-2270.739) (-2280.586) [-2276.678] (-2278.575) * (-2284.423) (-2263.699) [-2281.958] (-2275.773) -- 0:02:16
840000 -- [-2273.638] (-2270.956) (-2271.110) (-2268.009) * (-2267.916) [-2272.431] (-2268.769) (-2262.455) -- 0:02:15
Average standard deviation of split frequencies: 0.007399
841000 -- [-2274.143] (-2278.767) (-2272.512) (-2284.222) * [-2258.820] (-2265.982) (-2280.758) (-2274.428) -- 0:02:14
842000 -- (-2269.511) (-2263.794) (-2267.997) [-2272.581] * (-2264.906) (-2277.679) [-2264.984] (-2262.868) -- 0:02:13
843000 -- (-2280.105) (-2268.282) (-2274.777) [-2269.995] * (-2263.481) (-2272.264) (-2264.225) [-2262.424] -- 0:02:12
844000 -- (-2274.346) (-2276.642) (-2260.923) [-2262.058] * (-2273.049) (-2279.652) (-2273.442) [-2263.864] -- 0:02:11
845000 -- (-2289.974) (-2276.061) [-2262.781] (-2285.826) * (-2275.482) (-2278.974) (-2275.909) [-2267.876] -- 0:02:11
Average standard deviation of split frequencies: 0.007597
846000 -- (-2283.960) [-2261.382] (-2269.472) (-2274.619) * [-2270.867] (-2271.779) (-2264.247) (-2271.196) -- 0:02:10
847000 -- (-2258.017) [-2263.140] (-2283.398) (-2285.064) * (-2281.350) (-2268.270) (-2275.369) [-2274.876] -- 0:02:09
848000 -- (-2265.274) (-2271.448) [-2274.346] (-2289.830) * (-2273.308) (-2268.092) (-2291.983) [-2260.926] -- 0:02:08
849000 -- (-2262.336) (-2279.719) [-2275.871] (-2289.480) * (-2270.836) [-2259.193] (-2264.284) (-2270.017) -- 0:02:07
850000 -- (-2276.285) [-2279.177] (-2294.971) (-2270.731) * (-2264.439) (-2272.912) [-2271.363] (-2285.731) -- 0:02:06
Average standard deviation of split frequencies: 0.007380
851000 -- (-2271.189) (-2277.599) [-2259.885] (-2275.301) * (-2279.516) (-2266.104) [-2260.800] (-2265.567) -- 0:02:06
852000 -- [-2266.329] (-2290.995) (-2268.175) (-2261.732) * (-2292.183) (-2275.140) (-2269.133) [-2266.135] -- 0:02:05
853000 -- [-2265.635] (-2272.712) (-2262.051) (-2269.688) * (-2284.222) (-2283.070) [-2261.599] (-2268.230) -- 0:02:04
854000 -- (-2269.706) (-2268.839) (-2269.924) [-2260.543] * (-2271.709) (-2279.319) (-2271.624) [-2265.329] -- 0:02:03
855000 -- (-2278.111) (-2275.346) [-2265.312] (-2267.627) * [-2268.083] (-2274.818) (-2271.956) (-2264.303) -- 0:02:02
Average standard deviation of split frequencies: 0.007482
856000 -- (-2270.224) (-2278.198) [-2261.761] (-2260.235) * [-2266.082] (-2269.537) (-2280.595) (-2273.615) -- 0:02:01
857000 -- (-2271.749) (-2286.124) [-2264.040] (-2268.582) * (-2259.216) [-2260.804] (-2285.845) (-2266.147) -- 0:02:01
858000 -- [-2268.595] (-2271.090) (-2269.363) (-2265.798) * [-2260.273] (-2285.897) (-2268.956) (-2278.089) -- 0:02:00
859000 -- [-2274.023] (-2281.543) (-2267.138) (-2298.957) * (-2267.858) (-2275.527) [-2269.473] (-2272.325) -- 0:01:59
860000 -- [-2254.008] (-2278.562) (-2264.172) (-2289.552) * (-2265.706) [-2257.563] (-2268.548) (-2273.706) -- 0:01:58
Average standard deviation of split frequencies: 0.007428
861000 -- (-2268.073) [-2266.744] (-2272.198) (-2279.669) * [-2260.539] (-2291.274) (-2272.603) (-2264.373) -- 0:01:57
862000 -- [-2277.303] (-2260.839) (-2261.129) (-2279.342) * (-2263.872) (-2276.878) [-2262.662] (-2274.617) -- 0:01:56
863000 -- (-2273.824) (-2271.697) (-2279.577) [-2267.530] * (-2279.949) (-2282.851) [-2260.569] (-2268.300) -- 0:01:56
864000 -- [-2253.074] (-2266.884) (-2276.515) (-2280.919) * (-2270.316) (-2272.189) (-2261.839) [-2265.078] -- 0:01:55
865000 -- [-2260.257] (-2264.956) (-2271.323) (-2283.466) * (-2282.000) (-2276.985) [-2266.351] (-2267.325) -- 0:01:54
Average standard deviation of split frequencies: 0.007554
866000 -- [-2266.806] (-2270.848) (-2275.573) (-2274.424) * (-2282.337) [-2262.269] (-2278.226) (-2276.923) -- 0:01:53
867000 -- [-2277.670] (-2260.385) (-2255.344) (-2264.560) * [-2272.655] (-2261.213) (-2268.305) (-2274.211) -- 0:01:52
868000 -- (-2272.249) (-2278.209) (-2265.255) [-2267.367] * [-2268.337] (-2280.188) (-2287.000) (-2268.470) -- 0:01:51
869000 -- [-2260.150] (-2267.565) (-2282.231) (-2274.005) * (-2269.017) [-2265.672] (-2259.635) (-2269.867) -- 0:01:50
870000 -- (-2266.990) (-2268.273) (-2290.299) [-2269.450] * (-2288.922) (-2271.485) [-2270.481] (-2277.631) -- 0:01:50
Average standard deviation of split frequencies: 0.007250
871000 -- [-2273.419] (-2271.386) (-2272.938) (-2265.256) * (-2277.194) (-2272.526) (-2276.026) [-2261.893] -- 0:01:49
872000 -- (-2261.468) (-2262.549) (-2277.303) [-2267.404] * [-2270.766] (-2271.419) (-2270.687) (-2263.139) -- 0:01:48
873000 -- (-2257.779) (-2251.899) (-2271.351) [-2262.548] * (-2265.421) (-2279.605) (-2274.124) [-2259.971] -- 0:01:47
874000 -- [-2262.084] (-2280.656) (-2268.718) (-2288.639) * (-2261.000) (-2273.030) (-2284.941) [-2261.372] -- 0:01:46
875000 -- (-2265.759) (-2276.517) (-2272.629) [-2264.022] * (-2275.612) [-2263.035] (-2277.322) (-2281.775) -- 0:01:45
Average standard deviation of split frequencies: 0.007271
876000 -- (-2257.296) [-2264.566] (-2285.778) (-2255.973) * (-2262.585) (-2292.557) [-2273.692] (-2278.959) -- 0:01:44
877000 -- (-2284.354) (-2269.411) (-2273.772) [-2261.656] * (-2286.173) (-2265.201) [-2266.519] (-2274.311) -- 0:01:44
878000 -- (-2291.586) (-2288.892) [-2260.413] (-2266.052) * (-2271.287) [-2256.680] (-2274.285) (-2270.429) -- 0:01:43
879000 -- (-2271.337) (-2274.814) [-2258.803] (-2253.080) * [-2273.379] (-2274.673) (-2265.571) (-2270.565) -- 0:01:42
880000 -- (-2267.001) [-2275.038] (-2270.100) (-2282.678) * [-2266.944] (-2269.625) (-2270.411) (-2280.748) -- 0:01:41
Average standard deviation of split frequencies: 0.007285
881000 -- (-2280.333) (-2279.461) [-2280.603] (-2265.723) * [-2262.312] (-2278.439) (-2293.983) (-2279.335) -- 0:01:40
882000 -- (-2270.077) (-2274.009) (-2267.518) [-2277.657] * (-2266.678) (-2281.311) [-2269.969] (-2271.530) -- 0:01:39
883000 -- (-2264.526) (-2274.463) [-2263.199] (-2278.579) * (-2272.855) (-2277.383) [-2266.722] (-2272.633) -- 0:01:38
884000 -- [-2275.251] (-2273.185) (-2263.624) (-2264.338) * (-2270.187) (-2256.441) (-2279.836) [-2269.037] -- 0:01:38
885000 -- (-2267.845) (-2270.107) [-2254.967] (-2272.053) * (-2267.771) (-2266.377) (-2288.555) [-2271.221] -- 0:01:37
Average standard deviation of split frequencies: 0.007111
886000 -- (-2285.546) [-2271.199] (-2266.271) (-2263.774) * (-2259.479) (-2263.037) [-2261.062] (-2276.985) -- 0:01:36
887000 -- (-2272.432) [-2255.836] (-2284.487) (-2256.079) * (-2262.416) (-2276.381) (-2283.571) [-2264.067] -- 0:01:35
888000 -- (-2261.188) (-2266.125) (-2282.473) [-2266.256] * (-2282.823) [-2265.493] (-2266.865) (-2268.520) -- 0:01:34
889000 -- (-2263.614) [-2275.880] (-2287.750) (-2285.651) * (-2262.515) (-2261.812) [-2258.830] (-2277.580) -- 0:01:33
890000 -- [-2252.676] (-2287.249) (-2264.809) (-2273.392) * (-2269.076) (-2268.569) (-2285.547) [-2263.251] -- 0:01:33
Average standard deviation of split frequencies: 0.007035
891000 -- (-2272.539) (-2272.775) (-2258.042) [-2263.477] * (-2269.586) (-2278.652) [-2266.320] (-2260.510) -- 0:01:32
892000 -- (-2279.614) (-2275.840) (-2261.045) [-2260.391] * (-2277.964) (-2275.012) [-2264.665] (-2264.552) -- 0:01:31
893000 -- [-2262.451] (-2272.358) (-2277.406) (-2278.927) * (-2277.115) [-2277.314] (-2266.508) (-2274.741) -- 0:01:30
894000 -- (-2283.713) [-2263.480] (-2286.084) (-2267.520) * [-2274.823] (-2274.196) (-2265.976) (-2268.124) -- 0:01:29
895000 -- (-2284.943) (-2270.704) [-2272.960] (-2258.960) * [-2259.657] (-2277.280) (-2260.723) (-2264.421) -- 0:01:28
Average standard deviation of split frequencies: 0.006852
896000 -- (-2288.144) [-2260.814] (-2277.221) (-2278.026) * [-2264.547] (-2262.760) (-2286.253) (-2276.094) -- 0:01:27
897000 -- [-2263.912] (-2269.804) (-2267.695) (-2276.060) * (-2280.413) [-2262.091] (-2275.348) (-2265.466) -- 0:01:27
898000 -- [-2261.045] (-2283.135) (-2280.130) (-2273.405) * [-2272.173] (-2257.498) (-2284.658) (-2288.718) -- 0:01:26
899000 -- (-2273.364) [-2277.419] (-2287.397) (-2256.315) * (-2282.905) (-2267.979) [-2266.406] (-2270.448) -- 0:01:25
900000 -- (-2268.859) [-2272.759] (-2292.129) (-2263.605) * (-2267.903) (-2267.773) (-2275.052) [-2267.433] -- 0:01:24
Average standard deviation of split frequencies: 0.006970
901000 -- (-2268.431) (-2282.398) (-2272.780) [-2268.945] * (-2280.988) [-2269.055] (-2278.231) (-2267.124) -- 0:01:23
902000 -- (-2272.013) (-2286.509) (-2270.680) [-2265.640] * (-2286.879) (-2284.476) (-2273.827) [-2267.367] -- 0:01:23
903000 -- (-2291.068) (-2264.604) (-2265.795) [-2258.290] * (-2273.873) [-2276.913] (-2275.230) (-2271.216) -- 0:01:22
904000 -- (-2283.151) (-2257.223) [-2267.449] (-2276.901) * [-2265.882] (-2263.010) (-2284.806) (-2269.934) -- 0:01:21
905000 -- [-2260.659] (-2273.542) (-2277.164) (-2279.866) * (-2272.389) (-2265.572) (-2286.913) [-2269.787] -- 0:01:20
Average standard deviation of split frequencies: 0.006777
906000 -- [-2263.170] (-2278.768) (-2267.494) (-2273.361) * (-2278.099) (-2275.990) [-2276.965] (-2284.778) -- 0:01:19
907000 -- (-2269.828) (-2272.938) [-2271.286] (-2259.855) * (-2266.055) [-2270.885] (-2275.276) (-2282.925) -- 0:01:18
908000 -- (-2266.046) [-2260.776] (-2277.056) (-2253.523) * (-2287.537) [-2267.917] (-2272.754) (-2280.371) -- 0:01:17
909000 -- (-2270.307) (-2285.153) [-2256.496] (-2257.998) * (-2265.253) (-2271.685) [-2266.547] (-2275.957) -- 0:01:16
910000 -- (-2272.134) [-2274.152] (-2279.840) (-2284.796) * (-2280.058) (-2266.599) [-2259.297] (-2279.870) -- 0:01:16
Average standard deviation of split frequencies: 0.006830
911000 -- (-2268.440) [-2265.452] (-2261.969) (-2281.728) * (-2283.124) (-2266.950) [-2268.186] (-2277.027) -- 0:01:15
912000 -- (-2268.575) (-2268.098) [-2264.599] (-2288.410) * [-2283.074] (-2275.688) (-2272.253) (-2284.564) -- 0:01:14
913000 -- (-2265.365) [-2264.215] (-2274.667) (-2271.205) * (-2261.260) (-2281.751) (-2262.335) [-2262.049] -- 0:01:13
914000 -- (-2273.064) [-2263.822] (-2264.580) (-2282.540) * [-2268.643] (-2265.570) (-2260.445) (-2265.249) -- 0:01:12
915000 -- (-2269.593) (-2278.315) [-2268.975] (-2270.956) * (-2280.970) (-2267.984) (-2287.178) [-2258.609] -- 0:01:11
Average standard deviation of split frequencies: 0.006803
916000 -- (-2277.207) (-2278.335) (-2263.183) [-2274.156] * (-2277.348) (-2273.858) [-2276.078] (-2267.797) -- 0:01:11
917000 -- (-2283.862) (-2277.766) (-2281.373) [-2265.585] * (-2280.057) (-2265.744) [-2261.162] (-2271.995) -- 0:01:10
918000 -- [-2261.961] (-2279.876) (-2270.352) (-2275.840) * (-2291.154) (-2271.316) [-2278.888] (-2259.053) -- 0:01:09
919000 -- (-2264.226) (-2265.978) [-2259.802] (-2279.307) * (-2281.247) (-2274.462) (-2267.559) [-2255.430] -- 0:01:08
920000 -- (-2268.125) (-2272.175) [-2277.204] (-2272.994) * (-2287.997) (-2277.020) [-2271.086] (-2276.324) -- 0:01:07
Average standard deviation of split frequencies: 0.006756
921000 -- [-2262.586] (-2275.530) (-2269.811) (-2273.076) * (-2280.796) (-2284.534) (-2270.766) [-2274.715] -- 0:01:06
922000 -- [-2267.466] (-2272.226) (-2273.002) (-2274.219) * (-2288.557) (-2265.708) (-2272.045) [-2273.689] -- 0:01:05
923000 -- (-2292.609) (-2275.865) [-2268.009] (-2264.237) * (-2269.569) [-2273.001] (-2277.284) (-2262.032) -- 0:01:05
924000 -- (-2278.431) (-2275.523) (-2272.354) [-2255.144] * (-2297.114) (-2263.905) [-2271.959] (-2261.073) -- 0:01:04
925000 -- (-2281.235) [-2274.068] (-2274.975) (-2270.929) * (-2290.433) [-2265.936] (-2274.681) (-2266.138) -- 0:01:03
Average standard deviation of split frequencies: 0.006618
926000 -- (-2267.663) (-2275.510) (-2283.281) [-2273.959] * (-2279.566) [-2264.365] (-2271.753) (-2285.665) -- 0:01:02
927000 -- (-2278.212) [-2271.148] (-2285.080) (-2272.528) * (-2284.979) (-2267.577) [-2270.071] (-2281.147) -- 0:01:01
928000 -- (-2282.701) (-2265.163) (-2271.647) [-2265.094] * [-2282.806] (-2268.744) (-2273.813) (-2279.203) -- 0:01:00
929000 -- (-2268.569) (-2278.419) (-2276.816) [-2264.026] * [-2265.855] (-2277.873) (-2296.811) (-2260.146) -- 0:01:00
930000 -- (-2273.887) [-2277.076] (-2287.539) (-2263.764) * (-2278.305) (-2277.504) [-2262.722] (-2276.957) -- 0:00:59
Average standard deviation of split frequencies: 0.006521
931000 -- [-2256.798] (-2268.148) (-2289.543) (-2267.823) * (-2266.301) (-2278.287) (-2273.500) [-2263.258] -- 0:00:58
932000 -- (-2262.472) (-2260.589) (-2291.473) [-2268.760] * (-2264.528) (-2270.151) (-2275.365) [-2266.754] -- 0:00:57
933000 -- (-2274.113) (-2269.295) (-2292.249) [-2265.163] * (-2258.626) [-2270.804] (-2273.475) (-2278.520) -- 0:00:56
934000 -- (-2281.212) (-2276.547) (-2271.997) [-2272.270] * (-2267.988) (-2266.061) [-2264.305] (-2279.304) -- 0:00:55
935000 -- (-2284.512) [-2268.993] (-2269.706) (-2276.502) * [-2262.604] (-2273.799) (-2273.148) (-2283.819) -- 0:00:54
Average standard deviation of split frequencies: 0.006421
936000 -- (-2271.631) (-2278.151) [-2276.866] (-2267.992) * [-2254.340] (-2285.082) (-2275.541) (-2302.823) -- 0:00:54
937000 -- (-2272.424) (-2282.998) (-2255.307) [-2261.908] * [-2264.561] (-2281.643) (-2267.849) (-2265.573) -- 0:00:53
938000 -- (-2289.712) (-2280.339) (-2264.713) [-2259.939] * (-2273.408) (-2271.411) (-2286.210) [-2267.727] -- 0:00:52
939000 -- (-2267.721) (-2290.310) (-2263.244) [-2260.278] * (-2275.746) [-2270.073] (-2268.919) (-2264.217) -- 0:00:51
940000 -- [-2257.115] (-2283.023) (-2276.014) (-2266.442) * (-2276.357) [-2259.025] (-2274.499) (-2283.976) -- 0:00:50
Average standard deviation of split frequencies: 0.006214
941000 -- (-2277.082) (-2261.499) (-2267.563) [-2276.950] * (-2279.845) [-2258.871] (-2273.317) (-2287.048) -- 0:00:49
942000 -- (-2294.057) [-2270.031] (-2261.688) (-2273.596) * (-2275.674) [-2259.435] (-2277.251) (-2280.446) -- 0:00:49
943000 -- (-2281.809) [-2265.414] (-2283.448) (-2289.482) * (-2265.560) (-2270.259) (-2268.724) [-2286.168] -- 0:00:48
944000 -- (-2270.064) [-2254.146] (-2278.590) (-2282.683) * (-2266.955) (-2266.938) [-2265.757] (-2276.783) -- 0:00:47
945000 -- (-2268.471) [-2266.020] (-2279.006) (-2283.637) * (-2272.632) [-2271.148] (-2275.797) (-2277.609) -- 0:00:46
Average standard deviation of split frequencies: 0.006369
946000 -- (-2274.701) (-2272.704) [-2272.723] (-2277.481) * (-2262.684) (-2273.545) [-2266.586] (-2264.816) -- 0:00:45
947000 -- (-2279.704) [-2270.026] (-2278.722) (-2274.227) * (-2288.021) (-2291.269) (-2285.001) [-2272.083] -- 0:00:44
948000 -- (-2276.200) (-2267.275) (-2279.435) [-2263.103] * (-2276.387) [-2268.353] (-2280.132) (-2269.703) -- 0:00:43
949000 -- (-2278.744) [-2261.916] (-2287.592) (-2272.828) * (-2290.649) (-2276.707) (-2273.310) [-2263.481] -- 0:00:43
950000 -- [-2264.421] (-2268.061) (-2268.261) (-2272.961) * (-2280.819) (-2281.191) [-2267.110] (-2274.273) -- 0:00:42
Average standard deviation of split frequencies: 0.006458
951000 -- (-2264.890) [-2274.011] (-2270.204) (-2275.068) * (-2274.743) (-2286.861) (-2282.544) [-2273.192] -- 0:00:41
952000 -- [-2271.189] (-2279.915) (-2277.064) (-2276.237) * [-2267.927] (-2278.817) (-2270.361) (-2278.346) -- 0:00:40
953000 -- (-2265.815) [-2266.833] (-2282.350) (-2275.638) * (-2260.450) (-2274.439) [-2259.218] (-2299.174) -- 0:00:39
954000 -- [-2267.034] (-2291.028) (-2275.790) (-2268.946) * [-2266.567] (-2286.502) (-2266.466) (-2281.949) -- 0:00:38
955000 -- (-2290.206) [-2283.146] (-2261.455) (-2270.043) * [-2269.671] (-2279.784) (-2280.519) (-2261.264) -- 0:00:38
Average standard deviation of split frequencies: 0.006386
956000 -- (-2275.631) (-2263.088) (-2290.537) [-2277.800] * [-2258.831] (-2278.563) (-2270.219) (-2273.494) -- 0:00:37
957000 -- [-2269.803] (-2281.184) (-2264.613) (-2278.689) * [-2256.836] (-2270.782) (-2270.733) (-2272.845) -- 0:00:36
958000 -- (-2293.314) (-2272.800) (-2270.074) [-2267.703] * [-2256.775] (-2276.247) (-2277.334) (-2288.953) -- 0:00:35
959000 -- (-2287.993) [-2266.797] (-2286.137) (-2266.223) * (-2268.720) (-2253.140) (-2280.073) [-2267.725] -- 0:00:34
960000 -- [-2260.602] (-2273.338) (-2268.671) (-2278.233) * (-2276.150) [-2258.423] (-2271.270) (-2274.036) -- 0:00:33
Average standard deviation of split frequencies: 0.006330
961000 -- (-2270.731) (-2281.236) (-2291.430) [-2266.583] * (-2267.219) [-2255.059] (-2284.150) (-2264.763) -- 0:00:32
962000 -- (-2276.658) (-2265.480) (-2278.452) [-2262.351] * (-2266.339) (-2271.224) (-2265.502) [-2259.316] -- 0:00:32
963000 -- (-2275.535) [-2290.150] (-2272.227) (-2272.594) * (-2253.992) (-2283.743) (-2271.656) [-2264.115] -- 0:00:31
964000 -- (-2271.076) (-2273.255) [-2262.664] (-2279.383) * (-2283.881) [-2262.759] (-2265.596) (-2284.174) -- 0:00:30
965000 -- (-2269.351) [-2273.569] (-2270.388) (-2269.366) * (-2279.167) (-2288.877) [-2261.734] (-2278.415) -- 0:00:29
Average standard deviation of split frequencies: 0.006332
966000 -- (-2273.599) (-2273.423) (-2265.103) [-2282.617] * (-2287.980) (-2268.042) [-2262.015] (-2280.939) -- 0:00:28
967000 -- (-2278.232) (-2284.775) [-2264.654] (-2275.730) * (-2292.836) (-2267.445) [-2264.383] (-2286.029) -- 0:00:27
968000 -- (-2270.466) (-2272.957) [-2272.260] (-2271.732) * [-2277.123] (-2271.406) (-2269.062) (-2273.042) -- 0:00:27
969000 -- (-2275.977) [-2274.345] (-2278.450) (-2250.652) * (-2269.630) (-2276.367) [-2258.030] (-2267.009) -- 0:00:26
970000 -- [-2276.900] (-2287.962) (-2261.186) (-2264.542) * [-2255.421] (-2270.444) (-2287.425) (-2295.293) -- 0:00:25
Average standard deviation of split frequencies: 0.006265
971000 -- (-2280.312) (-2297.396) [-2268.776] (-2271.848) * [-2255.986] (-2292.400) (-2280.251) (-2272.629) -- 0:00:24
972000 -- (-2274.033) (-2293.780) [-2254.389] (-2269.276) * [-2273.237] (-2276.378) (-2275.126) (-2270.309) -- 0:00:23
973000 -- [-2263.254] (-2277.047) (-2263.992) (-2266.494) * (-2274.947) (-2273.496) [-2267.635] (-2267.527) -- 0:00:22
974000 -- [-2263.880] (-2276.133) (-2259.430) (-2271.692) * (-2287.638) (-2278.548) (-2287.405) [-2261.731] -- 0:00:21
975000 -- (-2276.543) (-2272.743) [-2262.050] (-2260.295) * (-2295.424) (-2276.745) (-2268.237) [-2258.317] -- 0:00:21
Average standard deviation of split frequencies: 0.006424
976000 -- (-2263.633) (-2278.704) [-2255.599] (-2266.077) * (-2266.958) (-2277.001) [-2260.933] (-2273.948) -- 0:00:20
977000 -- [-2261.321] (-2275.885) (-2277.749) (-2272.056) * (-2278.825) (-2289.070) [-2265.366] (-2273.030) -- 0:00:19
978000 -- (-2279.542) [-2256.167] (-2276.584) (-2267.005) * (-2263.384) [-2265.191] (-2287.147) (-2274.686) -- 0:00:18
979000 -- (-2271.607) (-2267.141) (-2267.918) [-2263.123] * (-2257.270) [-2264.033] (-2279.297) (-2264.733) -- 0:00:17
980000 -- (-2272.762) (-2289.754) (-2271.134) [-2265.828] * (-2264.574) (-2281.459) [-2269.642] (-2264.025) -- 0:00:16
Average standard deviation of split frequencies: 0.006465
981000 -- (-2261.373) (-2276.744) (-2271.957) [-2278.636] * [-2267.536] (-2270.764) (-2270.089) (-2273.438) -- 0:00:16
982000 -- (-2269.104) (-2268.368) (-2293.190) [-2272.525] * (-2268.593) [-2267.038] (-2263.137) (-2283.838) -- 0:00:15
983000 -- (-2273.184) (-2259.941) (-2279.136) [-2263.210] * [-2263.765] (-2279.374) (-2270.741) (-2276.268) -- 0:00:14
984000 -- (-2284.814) (-2286.173) (-2266.032) [-2268.951] * (-2274.729) [-2269.789] (-2283.792) (-2276.040) -- 0:00:13
985000 -- (-2267.713) [-2260.366] (-2280.735) (-2265.531) * [-2266.849] (-2274.291) (-2275.241) (-2295.459) -- 0:00:12
Average standard deviation of split frequencies: 0.006514
986000 -- (-2267.377) [-2266.156] (-2270.450) (-2269.460) * (-2278.144) [-2274.015] (-2269.192) (-2274.302) -- 0:00:11
987000 -- (-2262.112) [-2261.027] (-2289.213) (-2279.429) * (-2279.934) (-2268.177) [-2261.131] (-2273.307) -- 0:00:10
988000 -- (-2283.478) [-2265.244] (-2270.000) (-2269.087) * (-2262.582) [-2258.668] (-2278.672) (-2280.993) -- 0:00:10
989000 -- [-2268.273] (-2278.235) (-2265.597) (-2280.253) * [-2258.204] (-2258.403) (-2270.610) (-2281.530) -- 0:00:09
990000 -- [-2271.303] (-2268.859) (-2278.033) (-2289.540) * [-2275.496] (-2270.328) (-2291.758) (-2282.116) -- 0:00:08
Average standard deviation of split frequencies: 0.006781
991000 -- (-2265.007) [-2264.720] (-2289.126) (-2271.245) * (-2272.290) (-2264.643) [-2272.275] (-2288.783) -- 0:00:07
992000 -- [-2263.334] (-2278.886) (-2262.712) (-2268.495) * [-2265.612] (-2274.795) (-2271.238) (-2261.230) -- 0:00:06
993000 -- [-2268.671] (-2290.683) (-2272.943) (-2267.833) * [-2270.695] (-2275.680) (-2281.235) (-2271.322) -- 0:00:05
994000 -- (-2256.059) (-2292.899) (-2277.849) [-2265.858] * (-2272.353) (-2269.720) [-2266.515] (-2282.639) -- 0:00:05
995000 -- (-2283.331) (-2262.509) (-2289.141) [-2266.704] * (-2278.773) (-2294.882) [-2260.762] (-2274.929) -- 0:00:04
Average standard deviation of split frequencies: 0.006449
996000 -- (-2280.635) [-2266.981] (-2286.171) (-2280.981) * (-2265.579) (-2270.163) (-2268.590) [-2257.192] -- 0:00:03
997000 -- [-2262.575] (-2283.629) (-2275.453) (-2258.344) * (-2279.350) (-2282.872) (-2272.862) [-2267.446] -- 0:00:02
998000 -- (-2257.316) (-2270.257) (-2273.973) [-2257.810] * (-2267.322) (-2271.512) [-2262.471] (-2266.302) -- 0:00:01
999000 -- (-2255.586) [-2266.822] (-2266.672) (-2266.829) * (-2269.035) (-2274.134) (-2281.315) [-2269.136] -- 0:00:00
1000000 -- (-2264.594) [-2257.637] (-2272.531) (-2273.138) * [-2274.847] (-2265.260) (-2279.397) (-2296.668) -- 0:00:00
Average standard deviation of split frequencies: 0.006324
Analysis completed in 14 mins 5 seconds
Analysis used 844.53 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -2245.33
Likelihood of best state for "cold" chain of run 2 was -2246.55
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
46.4 % ( 37 %) Dirichlet(Revmat{all})
61.7 % ( 48 %) Slider(Revmat{all})
25.6 % ( 19 %) Dirichlet(Pi{all})
27.7 % ( 26 %) Slider(Pi{all})
37.6 % ( 30 %) Multiplier(Alpha{1,2})
52.0 % ( 39 %) Multiplier(Alpha{3})
47.9 % ( 23 %) Slider(Pinvar{all})
60.5 % ( 65 %) ExtSPR(Tau{all},V{all})
50.1 % ( 55 %) ExtTBR(Tau{all},V{all})
61.3 % ( 59 %) NNI(Tau{all},V{all})
65.3 % ( 67 %) ParsSPR(Tau{all},V{all})
27.2 % ( 29 %) Multiplier(V{all})
64.2 % ( 74 %) Nodeslider(V{all})
25.4 % ( 25 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
46.4 % ( 36 %) Dirichlet(Revmat{all})
61.4 % ( 55 %) Slider(Revmat{all})
25.7 % ( 31 %) Dirichlet(Pi{all})
27.8 % ( 27 %) Slider(Pi{all})
37.2 % ( 24 %) Multiplier(Alpha{1,2})
53.4 % ( 33 %) Multiplier(Alpha{3})
47.8 % ( 36 %) Slider(Pinvar{all})
59.8 % ( 68 %) ExtSPR(Tau{all},V{all})
49.6 % ( 51 %) ExtTBR(Tau{all},V{all})
61.1 % ( 62 %) NNI(Tau{all},V{all})
65.2 % ( 69 %) ParsSPR(Tau{all},V{all})
27.3 % ( 26 %) Multiplier(V{all})
64.1 % ( 58 %) Nodeslider(V{all})
25.7 % ( 25 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.55 0.26 0.10
2 | 166420 0.59 0.30
3 | 167364 166340 0.62
4 | 167217 166568 166091
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.56 0.26 0.11
2 | 166789 0.59 0.30
3 | 167214 166246 0.62
4 | 166290 166902 166559
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -2262.12
| 2 1 |
| 1 1 |
| 2 1 |
| 1 2 11 2 1 2 1 |
| 22 12 12 11 1 1 2|
| 11 11 2 2 2 1 *1 1 1 11|
|1 22 2 1 2 1 * 21 11 2 |
| 2 12 2 2 2 1 1 1 22 12 * 2 12 22 |
|2 21 11 2 2 21 1 1 |
| 1 1 1 1 2 2 |
| 1 22 1 2 2 2 2 2 1 |
| 1 2 2 21 1 |
| 2 2 2 2 |
| 2 1 2 2 * 1 |
| 2 1 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -2269.96
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -2254.20 -2284.39
2 -2254.44 -2283.29
--------------------------------------
TOTAL -2254.32 -2283.99
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.428245 0.003037 0.330522 0.546430 0.423754 1285.06 1343.30 1.000
r(A<->C){all} 0.070148 0.000640 0.022837 0.117575 0.067311 714.78 727.13 1.000
r(A<->G){all} 0.242251 0.001724 0.169512 0.330085 0.239678 692.48 697.98 1.000
r(A<->T){all} 0.042625 0.000197 0.016953 0.069873 0.041512 968.50 1005.40 1.000
r(C<->G){all} 0.048569 0.000409 0.012403 0.088058 0.046375 517.29 616.77 1.002
r(C<->T){all} 0.542965 0.002502 0.438468 0.636335 0.543434 658.99 666.38 1.000
r(G<->T){all} 0.053442 0.000220 0.027626 0.084168 0.051963 909.72 976.72 1.000
pi(A){all} 0.227564 0.000193 0.200206 0.254103 0.227729 968.50 986.16 1.000
pi(C){all} 0.163042 0.000137 0.140324 0.185937 0.163116 924.42 1117.97 1.000
pi(G){all} 0.227061 0.000201 0.200703 0.256843 0.226764 1072.65 1134.96 1.000
pi(T){all} 0.382333 0.000239 0.350956 0.411445 0.382505 692.76 924.00 1.000
alpha{1,2} 0.185869 0.002332 0.106164 0.282908 0.178591 1251.20 1270.72 1.004
alpha{3} 2.599369 1.418103 0.767666 4.987240 2.371193 1392.16 1414.86 1.000
pinvar{all} 0.584297 0.002784 0.481180 0.685157 0.587408 1195.20 1297.49 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C1
2 -- C10
3 -- C11
4 -- C12
5 -- C13
6 -- C14
7 -- C15
8 -- C16
9 -- C17
10 -- C18
11 -- C19
12 -- C2
13 -- C20
14 -- C21
15 -- C22
16 -- C23
17 -- C24
18 -- C25
19 -- C26
20 -- C27
21 -- C3
22 -- C4
23 -- C5
24 -- C6
25 -- C7
26 -- C8
27 -- C9
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
---------------------------------
1 -- .**************************
2 -- .*.........................
3 -- ..*........................
4 -- ...*.......................
5 -- ....*......................
6 -- .....*.....................
7 -- ......*....................
8 -- .......*...................
9 -- ........*..................
10 -- .........*.................
11 -- ..........*................
12 -- ...........*...............
13 -- ............*..............
14 -- .............*.............
15 -- ..............*............
16 -- ...............*...........
17 -- ................*..........
18 -- .................*.........
19 -- ..................*........
20 -- ...................*.......
21 -- ....................*......
22 -- .....................*.....
23 -- ......................*....
24 -- .......................*...
25 -- ........................*..
26 -- .........................*.
27 -- ..........................*
28 -- .....*........*............
29 -- .*******.******************
30 -- .......*.*............*....
31 -- .**...*....***.*..*.....***
32 -- ...*......*.....**.**......
33 -- .....................*.*...
34 -- ...**..*.**.....**.*****...
35 -- ...***.*.**...*.**.*****...
36 -- ...**.....*.....**.***.*...
37 -- .......*..............*....
38 -- ...*...*.**.....**.*****...
39 -- .......*.*...........***...
40 -- .........*............*....
41 -- .......*.*.................
42 -- .**..**....*****..*.....***
43 -- ....*................*.*...
44 -- ...*......*.....**.***.*...
45 -- .******...************.****
46 -- ...***....*...*.**.***.*...
47 -- ...*......*.....**.*.......
48 -- ................*..*.......
49 -- ...**.....*.....**.**......
50 -- ...................**......
51 -- ...*......*................
52 -- ...*................*......
53 -- ................**.........
54 -- .................*.*.......
55 -- ..........*......*.........
56 -- ..........*.....*..........
57 -- ...*.............*.........
58 -- ...*............**.**......
59 -- ...*......*......*.**......
60 -- ...*...............*.......
61 -- .................*..*......
62 -- ...*......*.....**..*......
63 -- ...*............*..........
64 -- ..........*.........*......
65 -- ..........*........*.......
66 -- ................*...*......
67 -- ..........*.....**.**......
---------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
28 3002 1.000000 0.000000 1.000000 1.000000 2
29 3002 1.000000 0.000000 1.000000 1.000000 2
30 3002 1.000000 0.000000 1.000000 1.000000 2
31 3002 1.000000 0.000000 1.000000 1.000000 2
32 3002 1.000000 0.000000 1.000000 1.000000 2
33 2977 0.991672 0.000471 0.991339 0.992005 2
34 2415 0.804464 0.002355 0.802798 0.806129 2
35 1670 0.556296 0.022612 0.540306 0.572285 2
36 1546 0.514990 0.005653 0.510993 0.518987 2
37 1283 0.427382 0.003298 0.425050 0.429714 2
38 1273 0.424051 0.003298 0.421719 0.426382 2
39 1117 0.372085 0.003298 0.369753 0.374417 2
40 881 0.293471 0.001413 0.292472 0.294470 2
41 838 0.279147 0.001884 0.277815 0.280480 2
42 833 0.277482 0.009893 0.270486 0.284477 2
43 801 0.266822 0.012719 0.257828 0.275816 2
44 571 0.190207 0.010835 0.182545 0.197868 2
45 466 0.155230 0.004711 0.151899 0.158561 2
46 453 0.150899 0.007066 0.145903 0.155896 2
47 410 0.136576 0.007537 0.131246 0.141905 2
48 373 0.124250 0.016488 0.112592 0.135909 2
49 365 0.121586 0.009893 0.114590 0.128581 2
50 364 0.121252 0.004711 0.117921 0.124584 2
51 356 0.118588 0.012248 0.109927 0.127249 2
52 352 0.117255 0.005653 0.113258 0.121252 2
53 350 0.116589 0.006595 0.111925 0.121252 2
54 347 0.115590 0.010835 0.107928 0.123251 2
55 347 0.115590 0.005182 0.111925 0.119254 2
56 345 0.114923 0.016488 0.103264 0.126582 2
57 336 0.111925 0.000942 0.111259 0.112592 2
58 335 0.111592 0.012719 0.102598 0.120586 2
59 334 0.111259 0.000942 0.110593 0.111925 2
60 331 0.110260 0.004240 0.107262 0.113258 2
61 325 0.108261 0.005182 0.104597 0.111925 2
62 321 0.106929 0.007066 0.101932 0.111925 2
63 319 0.106262 0.010835 0.098601 0.113924 2
64 319 0.106262 0.011777 0.097935 0.114590 2
65 315 0.104930 0.000471 0.104597 0.105263 2
66 309 0.102931 0.012719 0.093937 0.111925 2
67 308 0.102598 0.000942 0.101932 0.103264 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.005312 0.000012 0.000018 0.011900 0.004683 1.001 2
length{all}[2] 0.001342 0.000002 0.000000 0.004000 0.000934 1.000 2
length{all}[3] 0.001354 0.000002 0.000000 0.004097 0.000940 1.000 2
length{all}[4] 0.001363 0.000002 0.000001 0.004114 0.000917 1.000 2
length{all}[5] 0.048104 0.000136 0.026995 0.070542 0.046932 1.000 2
length{all}[6] 0.004178 0.000006 0.000477 0.009193 0.003725 1.000 2
length{all}[7] 0.002762 0.000004 0.000102 0.006559 0.002321 1.000 2
length{all}[8] 0.001370 0.000002 0.000001 0.004022 0.000919 1.000 2
length{all}[9] 0.007481 0.000016 0.000995 0.015281 0.006869 1.000 2
length{all}[10] 0.003998 0.000006 0.000250 0.008727 0.003425 1.000 2
length{all}[11] 0.001345 0.000002 0.000000 0.004010 0.000960 1.000 2
length{all}[12] 0.001393 0.000002 0.000000 0.004156 0.000938 1.000 2
length{all}[13] 0.001408 0.000002 0.000000 0.004298 0.000946 1.000 2
length{all}[14] 0.001368 0.000002 0.000002 0.004041 0.000938 1.000 2
length{all}[15] 0.001449 0.000002 0.000000 0.004335 0.000987 1.000 2
length{all}[16] 0.001352 0.000002 0.000001 0.003983 0.000932 1.000 2
length{all}[17] 0.005619 0.000008 0.001000 0.011081 0.005143 1.000 2
length{all}[18] 0.001393 0.000002 0.000000 0.004192 0.000981 1.001 2
length{all}[19] 0.001430 0.000002 0.000000 0.004352 0.000968 1.000 2
length{all}[20] 0.001374 0.000002 0.000000 0.004232 0.000921 1.000 2
length{all}[21] 0.002758 0.000004 0.000048 0.006626 0.002279 1.000 2
length{all}[22] 0.016267 0.000044 0.003979 0.028912 0.015354 1.000 2
length{all}[23] 0.001381 0.000002 0.000000 0.004201 0.000929 1.000 2
length{all}[24] 0.027255 0.000068 0.012462 0.043860 0.026450 1.000 2
length{all}[25] 0.001397 0.000002 0.000000 0.004334 0.000950 1.000 2
length{all}[26] 0.001456 0.000002 0.000000 0.004337 0.001030 1.001 2
length{all}[27] 0.001408 0.000002 0.000000 0.004292 0.000970 1.001 2
length{all}[28] 0.032599 0.000090 0.015333 0.051722 0.031520 1.001 2
length{all}[29] 0.035968 0.000108 0.016640 0.055664 0.034756 1.000 2
length{all}[30] 0.074355 0.000272 0.044123 0.105924 0.072965 1.000 2
length{all}[31] 0.026397 0.000069 0.011553 0.042807 0.025496 1.000 2
length{all}[32] 0.032392 0.000092 0.015676 0.051747 0.031307 1.000 2
length{all}[33] 0.019839 0.000070 0.004318 0.035629 0.018950 1.000 2
length{all}[34] 0.013058 0.000046 0.001391 0.025959 0.012129 1.000 2
length{all}[35] 0.008526 0.000030 0.000017 0.019152 0.007545 1.000 2
length{all}[36] 0.011910 0.000041 0.001674 0.024106 0.010913 0.999 2
length{all}[37] 0.001791 0.000003 0.000002 0.005653 0.001293 1.000 2
length{all}[38] 0.009939 0.000033 0.000209 0.019791 0.009085 0.999 2
length{all}[39] 0.010295 0.000049 0.000048 0.024119 0.008963 1.001 2
length{all}[40] 0.001361 0.000002 0.000002 0.004138 0.000943 1.001 2
length{all}[41] 0.001368 0.000002 0.000000 0.004145 0.000931 0.999 2
length{all}[42] 0.007700 0.000029 0.000035 0.018194 0.006512 1.000 2
length{all}[43] 0.009024 0.000045 0.000013 0.021954 0.007832 0.999 2
length{all}[44] 0.006274 0.000022 0.000002 0.015298 0.005458 1.000 2
length{all}[45] 0.010922 0.000043 0.000081 0.023406 0.009915 0.998 2
length{all}[46] 0.008763 0.000027 0.000707 0.018738 0.008121 0.998 2
length{all}[47] 0.001596 0.000002 0.000003 0.005149 0.001071 1.003 2
length{all}[48] 0.001427 0.000002 0.000010 0.004237 0.000960 1.020 2
length{all}[49] 0.004647 0.000014 0.000001 0.011954 0.003849 0.997 2
length{all}[50] 0.001423 0.000002 0.000007 0.004207 0.000953 0.997 2
length{all}[51] 0.001239 0.000001 0.000006 0.003742 0.000889 1.004 2
length{all}[52] 0.001445 0.000002 0.000003 0.004030 0.000917 1.020 2
length{all}[53] 0.001415 0.000002 0.000008 0.004066 0.001088 0.998 2
length{all}[54] 0.001507 0.000002 0.000001 0.004562 0.001050 1.000 2
length{all}[55] 0.001426 0.000002 0.000012 0.004321 0.001063 1.004 2
length{all}[56] 0.001199 0.000002 0.000017 0.003117 0.000866 0.997 2
length{all}[57] 0.001479 0.000002 0.000000 0.004148 0.001004 1.000 2
length{all}[58] 0.001585 0.000002 0.000005 0.004224 0.001174 0.998 2
length{all}[59] 0.001327 0.000002 0.000005 0.003704 0.000957 0.997 2
length{all}[60] 0.001464 0.000003 0.000003 0.004453 0.000877 0.999 2
length{all}[61] 0.001377 0.000002 0.000000 0.004065 0.000991 0.998 2
length{all}[62] 0.001229 0.000001 0.000001 0.003474 0.000922 0.997 2
length{all}[63] 0.001485 0.000002 0.000001 0.004411 0.000968 0.999 2
length{all}[64] 0.001367 0.000001 0.000002 0.003670 0.001040 0.998 2
length{all}[65] 0.001297 0.000002 0.000008 0.003483 0.000925 1.015 2
length{all}[66] 0.001403 0.000002 0.000001 0.004606 0.001011 0.999 2
length{all}[67] 0.001369 0.000003 0.000000 0.004252 0.000797 0.999 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.006324
Maximum standard deviation of split frequencies = 0.022612
Average PSRF for parameter values (excluding NA and >10.0) = 1.001
Maximum PSRF for parameter values = 1.020
Clade credibility values:
/---------------------------------------------------------------------- C1 (1)
|
|---------------------------------------------------------------------- C17 (9)
|
| /------------ C10 (2)
| |
| |------------ C11 (3)
| |
| |------------ C15 (7)
| |
| |------------ C2 (12)
| |
| |------------ C20 (13)
| |
| /---------------------100---------------------+------------ C21 (14)
+ | |
| | |------------ C23 (16)
| | |
| | |------------ C26 (19)
| | |
| | |------------ C7 (25)
| | |
| | |------------ C8 (26)
| | |
| | \------------ C9 (27)
| |
| | /------------ C12 (4)
| | |
| | |------------ C19 (11)
| | |
\----100----+ |------------ C24 (17)
| /----100---+
| | |------------ C25 (18)
| | |
| | |------------ C27 (20)
| | |
| /-----51----+ \------------ C3 (21)
| | |
| | |----------------------- C13 (5)
| | |
| | | /------------ C4 (22)
| /-----80----+ \----99----+
| | | \------------ C6 (24)
| | |
| | | /------------ C16 (8)
| | | |
\----56----+ \----------100---------+------------ C18 (10)
| |
| \------------ C5 (23)
|
| /------------ C14 (6)
\----------------100---------------+
\------------ C22 (15)
Phylogram (based on average branch lengths):
/--- C1 (1)
|
|---- C17 (9)
|
| /- C10 (2)
| |
| |- C11 (3)
| |
| |- C15 (7)
| |
| |- C2 (12)
| |
| |- C20 (13)
| |
| /------------+- C21 (14)
+ | |
| | |- C23 (16)
| | |
| | |- C26 (19)
| | |
| | |- C7 (25)
| | |
| | |- C8 (26)
| | |
| | \- C9 (27)
| |
| | / C12 (4)
| | |
| | | C19 (11)
| | |
\------------------+ |-- C24 (17)
| /----------------+
| | | C25 (18)
| | |
| | | C27 (20)
| | |
| /-----+ \- C3 (21)
| | |
| | |------------------------- C13 (5)
| | |
| | | /-------- C4 (22)
| /-----+ \---------+
| | | \-------------- C6 (24)
| | |
| | | /- C16 (8)
| | | |
\---+ \--------------------------------------+-- C18 (10)
| |
| \- C5 (23)
|
| /- C14 (6)
\----------------+
\ C22 (15)
|---------| 0.020 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3002 trees sampled):
50 % credible set contains 1501 trees
90 % credible set contains 2702 trees
95 % credible set contains 2852 trees
99 % credible set contains 2972 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Wed Nov 02 20:10:58 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.08 sec, SCORE=1000, Nseq=27, Len=288
C1 SKRTRVIKGTCCWILASTFLFCSIIAAFVKWTMFMYVTTHMLGVTLCALC
C2 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C3 SKRTRVIKGTCCWILASTFLVCSIISAFVKWTMFMYVTTHMLGVTLCALC
C4 SKRTRVVKGTCCWILASTFLVCSIISAFVKWTMFMYVTTHMLGVTLCALC
C5 SKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C6 SKRTRVVKGTCCWILASTFLVCSIISAFVKWTMFMYVTTHMLGVTLCALC
C7 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C8 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C9 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C10 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C11 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C12 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C13 SSRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C14 SKRTRVIKGTFCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C15 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C16 SKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C17 SKRTRVIKGTCCWILASTFLFCSIIAAFVKWTMFMYVTTHMLGVTLCALC
C18 SKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C19 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C20 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C21 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C22 SKRTRVIKGTFCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C23 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C24 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C25 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C26 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
C27 SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALC
*.****:*** *******:*.****:************************
C1 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C2 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C3 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C4 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C5 FVSFAMLLVKHKHLYLTMFIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C6 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C7 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C8 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C9 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C10 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C11 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C12 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C13 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C14 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C15 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C16 FVSFAMLLVKHKHLYLTMFIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C17 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C18 FVSFAMLLVKHKHLYLTMFIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C19 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C20 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C21 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C22 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C23 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C24 FVIFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVVGYKQSFRGLAYAWLS
C25 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C26 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
C27 FVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLS
** *****:*********:**************** **************
C1 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C2 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C3 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
C4 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C5 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLV
C6 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLV
C7 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C8 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C9 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C10 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C11 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C12 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
C13 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRFVSLV
C14 HFVPAVDYTYMDEVLYGVVLLFAMVFVTMRSINHDVFSIMFLVGRLVSLV
C15 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C16 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLV
C17 HFVPAVDYTYMDEVLYGVVLLIAMVFVTMRSINHDVFSIMFLVGRLVSLV
C18 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLV
C19 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
C20 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C21 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C22 HFVPAVDYTYMDEVLYGVVLLFAMVFVTMRSINHDVFSIMFLVGRLVSLV
C23 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C24 YFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
C25 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
C26 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLV
C27 HFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLV
:********************.**************** ******:****
C1 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C2 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C3 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C4 SMWYFGANLEEEVLLFLASLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C5 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C6 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C7 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C8 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C9 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C10 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C11 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C12 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C13 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C14 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLRTAKVIAKWLAVNVLYFT
C15 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C16 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C17 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C18 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C19 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C20 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C21 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C22 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C23 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C24 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C25 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C26 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
C27 SMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFT
*****************:************** *****************
C1 DVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C2 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C3 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C4 DVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C5 DVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C6 DVPQIKLVLLGYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C7 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C8 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C9 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C10 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C11 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C12 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C13 DVPQIKLVLLGYLCIGYVCCCYWGVLSLLNSISRMPLGVYNYKISVQELR
C14 DVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C15 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPFGVYNYKISVQELR
C16 DVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C17 DVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C18 DVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C19 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C20 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C21 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C22 DVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C23 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C24 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C25 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
C26 DVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELR
C27 DIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR
*:**:*****.*************:******* ***:*************
C1 YMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ
C2 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C3 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C4 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C5 YMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ
C6 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C7 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C8 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C9 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C10 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C11 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C12 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C13 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C14 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C15 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C16 YMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ
C17 YMNANGLRPPKNSFEALVLNFKLLGIGGVPVIEVSQIQ
C18 YMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ
C19 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C20 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C21 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C22 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C23 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C24 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C25 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C26 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
C27 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
**********:******:********************
-- Starting log on Thu Nov 03 00:18:12 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/codeml,A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C1 864 sites
reading seq# 2 C2 864 sites
reading seq# 3 C3 864 sites
reading seq# 4 C4 864 sites
reading seq# 5 C5 864 sites
reading seq# 6 C6 864 sites
reading seq# 7 C7 864 sites
reading seq# 8 C8 864 sites
reading seq# 9 C9 864 sites
reading seq#10 C10 864 sites
reading seq#11 C11 864 sites
reading seq#12 C12 864 sites
reading seq#13 C13 864 sites
reading seq#14 C14 864 sites
reading seq#15 C15 864 sites
reading seq#16 C16 864 sites
reading seq#17 C17 864 sites
reading seq#18 C18 864 sites
reading seq#19 C19 864 sites
reading seq#20 C20 864 sites
reading seq#21 C21 864 sites
reading seq#22 C22 864 sites
reading seq#23 C23 864 sites
reading seq#24 C24 864 sites
reading seq#25 C25 864 sites
reading seq#26 C26 864 sites
reading seq#27 C27 864 sitesns = 27 ls = 864
Reading sequences, sequential format..
Reading seq # 1: C1
Reading seq # 2: C2
Reading seq # 3: C3
Reading seq # 4: C4
Reading seq # 5: C5
Reading seq # 6: C6
Reading seq # 7: C7
Reading seq # 8: C8
Reading seq # 9: C9
Reading seq #10: C10
Reading seq #11: C11
Reading seq #12: C12
Reading seq #13: C13
Reading seq #14: C14
Reading seq #15: C15
Reading seq #16: C16
Reading seq #17: C17
Reading seq #18: C18
Reading seq #19: C19
Reading seq #20: C20
Reading seq #21: C21
Reading seq #22: C22
Reading seq #23: C23
Reading seq #24: C24
Reading seq #25: C25
Reading seq #26: C26
Reading seq #27: C27
Sites with gaps or missing data are removed.
3 ambiguity characters in seq. 1
3 ambiguity characters in seq. 2
3 ambiguity characters in seq. 3
3 ambiguity characters in seq. 4
3 ambiguity characters in seq. 5
3 ambiguity characters in seq. 6
3 ambiguity characters in seq. 7
3 ambiguity characters in seq. 8
3 ambiguity characters in seq. 9
3 ambiguity characters in seq. 10
3 ambiguity characters in seq. 11
3 ambiguity characters in seq. 12
3 ambiguity characters in seq. 13
3 ambiguity characters in seq. 14
3 ambiguity characters in seq. 15
3 ambiguity characters in seq. 16
3 ambiguity characters in seq. 17
3 ambiguity characters in seq. 18
3 ambiguity characters in seq. 19
3 ambiguity characters in seq. 20
3 ambiguity characters in seq. 21
3 ambiguity characters in seq. 22
3 ambiguity characters in seq. 23
3 ambiguity characters in seq. 25
3 ambiguity characters in seq. 26
3 ambiguity characters in seq. 27
1 sites are removed. 86
Sequences read..
Counting site patterns.. 0:00
Compressing, 168 patterns at 287 / 287 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 168 patterns at 287 / 287 sites (100.0%), 0:00
Counting codons..
2808 bytes for distance
163968 bytes for conP
14784 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(1, 17, ((10, 11, 15, 2, 20, 21, 23, 26, 7, 8, 9), ((((12, 19, 24, 25, 27, 3), 13, (4, 6)), (16, 18, 5)), (14, 22)))); MP score: 206
819840 bytes for conP, adjusted
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
29
0.043556 0.072781 0.039819 0.066530 0.106912 0.040025 0.031652 0.074255 0.050703 0.097795 0.107458 0.025944 0.068919 0.087416 0.047196 0.069366 0.036158 0.099754 0.026415 0.051542 0.069893 0.089855 0.047622 0.034712 0.019609 0.071961 0.022723 0.057505 0.099967 0.018329 0.011220 0.102269 0.060214 0.060302 0.093870 0.104492 0.300000 0.688012 0.375285
ntime & nrate & np: 36 2 39
Bounds (np=39):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 11.509101
np = 39
lnL0 = -2856.737035
Iterating by ming2
Initial: fx= 2856.737035
x= 0.04356 0.07278 0.03982 0.06653 0.10691 0.04003 0.03165 0.07426 0.05070 0.09779 0.10746 0.02594 0.06892 0.08742 0.04720 0.06937 0.03616 0.09975 0.02641 0.05154 0.06989 0.08986 0.04762 0.03471 0.01961 0.07196 0.02272 0.05750 0.09997 0.01833 0.01122 0.10227 0.06021 0.06030 0.09387 0.10449 0.30000 0.68801 0.37528
1 h-m-p 0.0000 0.0000 2077.8697 ++ 2730.894555 m 0.0000 44 | 1/39
2 h-m-p 0.0000 0.0000 1777.0724 ++ 2640.401812 m 0.0000 86 | 2/39
3 h-m-p 0.0000 0.0000 14582.1591 ++ 2592.892137 m 0.0000 128 | 3/39
4 h-m-p 0.0000 0.0000 7405.9568 ++ 2568.723130 m 0.0000 170 | 4/39
5 h-m-p 0.0000 0.0000 27683.1114 ++ 2539.154255 m 0.0000 212 | 5/39
6 h-m-p 0.0000 0.0000 163309.8835 ++ 2537.325220 m 0.0000 254 | 6/39
7 h-m-p 0.0000 0.0000 3235.0355 ++ 2526.112186 m 0.0000 296 | 7/39
8 h-m-p 0.0000 0.0000 8772.7722 ++ 2523.092652 m 0.0000 338 | 8/39
9 h-m-p 0.0000 0.0000 130644.5907 ++ 2497.467022 m 0.0000 380 | 9/39
10 h-m-p 0.0000 0.0000 4839.5322 ++ 2473.624023 m 0.0000 422 | 10/39
11 h-m-p 0.0000 0.0000 3876.7260 ++ 2471.547933 m 0.0000 464 | 11/39
12 h-m-p 0.0000 0.0000 2478.8046 ++ 2464.034228 m 0.0000 506 | 12/39
13 h-m-p 0.0000 0.0000 8552.2244 ++ 2444.258105 m 0.0000 548 | 13/39
14 h-m-p 0.0000 0.0000 9493.1433 ++ 2430.646278 m 0.0000 590 | 14/39
15 h-m-p 0.0000 0.0000 13091.2364 ++ 2425.387553 m 0.0000 632 | 15/39
16 h-m-p 0.0000 0.0000 7679.1761 ++ 2421.817546 m 0.0000 674 | 16/39
17 h-m-p 0.0000 0.0000 4222.5237 ++ 2421.537705 m 0.0000 716 | 17/39
18 h-m-p 0.0000 0.0000 319290.0411 +CYYCYCYC 2368.984494 7 0.0000 770 | 17/39
19 h-m-p 0.0000 0.0000 2983.0607 +YYCYCCC 2348.838846 6 0.0000 822 | 17/39
20 h-m-p 0.0001 0.0003 154.2128 YCYCCC 2345.476745 5 0.0002 872 | 17/39
21 h-m-p 0.0000 0.0002 82.6683 +YYCCCC 2343.807957 5 0.0001 923 | 17/39
22 h-m-p 0.0000 0.0002 172.3009 +YCYCCC 2341.545288 5 0.0001 974 | 17/39
23 h-m-p 0.0001 0.0011 160.8505 +YCCC 2336.967597 3 0.0004 1022 | 17/39
24 h-m-p 0.0003 0.0013 70.2252 YCCC 2335.585924 3 0.0004 1069 | 17/39
25 h-m-p 0.0008 0.0040 33.5459 CCCC 2333.683440 3 0.0012 1117 | 17/39
26 h-m-p 0.0003 0.0014 68.9216 +YYCCCC 2328.586665 5 0.0009 1168 | 17/39
27 h-m-p 0.0003 0.0013 99.9138 +YYCCC 2320.780229 4 0.0008 1217 | 17/39
28 h-m-p 0.0008 0.0042 42.4754 YCYCCC 2313.555504 5 0.0022 1267 | 17/39
29 h-m-p 0.0155 0.0774 2.4664 +YYCCCC 2293.020975 5 0.0491 1318 | 17/39
30 h-m-p 0.0176 0.0880 3.7225 +YCYC 2274.648270 3 0.0467 1365 | 17/39
31 h-m-p 0.1091 0.5457 0.8547 CCCC 2265.164172 3 0.1670 1413 | 17/39
32 h-m-p 0.0330 0.1652 0.5448 +YCCCCC 2254.213871 5 0.1356 1487 | 17/39
33 h-m-p 0.0227 0.1135 1.3164 +YCYYYCCCCC 2237.672122 9 0.1036 1566 | 17/39
34 h-m-p 0.0099 0.0496 0.4308 +YYYCCC 2236.196397 5 0.0357 1616 | 17/39
35 h-m-p 0.0050 0.0297 3.0520 +YYYYC 2231.794422 4 0.0195 1685 | 17/39
36 h-m-p 0.0586 0.2932 0.8980 +CYCC 2218.754646 3 0.2264 1733 | 17/39
37 h-m-p 0.0748 0.3739 0.5872 ++ 2204.923714 m 0.3739 1797 | 17/39
38 h-m-p 0.0000 0.0000 1.6943
h-m-p: 1.24728202e-18 6.23641009e-18 1.69427109e+00 2204.923714
.. | 17/39
39 h-m-p 0.0000 0.0002 3713.1690 YCCCCC 2201.994734 5 0.0000 1910 | 17/39
40 h-m-p 0.0000 0.0002 647.5591 +CCC 2193.183276 2 0.0001 1957 | 17/39
41 h-m-p 0.0000 0.0001 343.5370 +YYYYCYCCC 2189.335758 8 0.0001 2011 | 17/39
42 h-m-p 0.0000 0.0000 1708.9659 +YYCCCC 2185.054820 5 0.0000 2062 | 17/39
43 h-m-p 0.0000 0.0002 470.6858 YCCC 2182.363578 3 0.0001 2109 | 17/39
44 h-m-p 0.0000 0.0001 260.0045 YCCC 2181.416034 3 0.0001 2156 | 17/39
45 h-m-p 0.0001 0.0006 137.1618 CCCC 2180.233328 3 0.0002 2204 | 17/39
46 h-m-p 0.0001 0.0006 123.2714 YCY 2179.969051 2 0.0001 2249 | 17/39
47 h-m-p 0.0002 0.0019 37.7810 YCC 2179.884821 2 0.0002 2294 | 17/39
48 h-m-p 0.0001 0.0012 78.3067 +YYYC 2179.614028 3 0.0003 2340 | 17/39
49 h-m-p 0.0001 0.0008 170.3404 CCC 2179.336862 2 0.0001 2386 | 17/39
50 h-m-p 0.0001 0.0008 213.2123 YCCC 2178.740655 3 0.0003 2433 | 17/39
51 h-m-p 0.0001 0.0007 381.7701 CCCC 2177.732892 3 0.0002 2481 | 17/39
52 h-m-p 0.0001 0.0004 662.0902 +YC 2176.279435 1 0.0002 2525 | 17/39
53 h-m-p 0.0002 0.0008 594.6832 YCCCC 2174.053595 4 0.0004 2574 | 17/39
54 h-m-p 0.0004 0.0020 469.2695 YCCC 2170.806633 3 0.0007 2621 | 17/39
55 h-m-p 0.0003 0.0017 260.5139 CCCCC 2169.800927 4 0.0004 2671 | 17/39
56 h-m-p 0.0005 0.0025 56.4079 YC 2169.679216 1 0.0003 2714 | 17/39
57 h-m-p 0.0018 0.0136 8.5967 CC 2169.662886 1 0.0005 2758 | 17/39
58 h-m-p 0.0023 0.0863 1.9583 CC 2169.660815 1 0.0007 2802 | 17/39
59 h-m-p 0.0015 0.3120 0.9214 +YC 2169.650221 1 0.0042 2846 | 17/39
60 h-m-p 0.0007 0.2800 5.2064 +++YCCC 2167.864502 3 0.0798 2918 | 17/39
61 h-m-p 0.0015 0.0075 23.0119 C 2167.832805 0 0.0004 2960 | 17/39
62 h-m-p 0.0410 8.0000 0.2115 ++YCCC 2167.243252 3 1.4995 3009 | 17/39
63 h-m-p 1.6000 8.0000 0.1096 CC 2167.051442 1 1.8616 3075 | 17/39
64 h-m-p 1.6000 8.0000 0.0360 CCC 2166.977464 2 2.0841 3143 | 17/39
65 h-m-p 1.6000 8.0000 0.0055 CCCC 2166.908669 3 2.0598 3213 | 17/39
66 h-m-p 0.1652 8.0000 0.0684 +YC 2166.873710 1 1.5925 3279 | 17/39
67 h-m-p 1.6000 8.0000 0.0102 YC 2166.870295 1 1.2529 3344 | 17/39
68 h-m-p 1.6000 8.0000 0.0021 C 2166.869891 0 1.3103 3408 | 17/39
69 h-m-p 1.6000 8.0000 0.0009 Y 2166.869864 0 0.9610 3472 | 17/39
70 h-m-p 1.6000 8.0000 0.0000 Y 2166.869861 0 1.0528 3536 | 17/39
71 h-m-p 0.3703 8.0000 0.0001 +Y 2166.869861 0 0.9804 3601 | 17/39
72 h-m-p 1.6000 8.0000 0.0000 -C 2166.869861 0 0.1000 3666 | 17/39
73 h-m-p 0.0891 8.0000 0.0000 --------------.. | 17/39
74 h-m-p 0.0037 1.8565 0.0089 ----C 2166.869861 0 0.0000 3810 | 17/39
75 h-m-p 0.0038 1.8817 0.0219 ------------.. | 17/39
76 h-m-p 0.0051 2.5538 0.0081 -----------C 2166.869861 0 0.0000 3959 | 17/39
77 h-m-p 0.0003 0.1318 0.1534 ----------.. | 17/39
78 h-m-p 0.0051 2.5539 0.0079 ------------ | 17/39
79 h-m-p 0.0051 2.5539 0.0079 ------------
Out..
lnL = -2166.869861
4180 lfun, 12540 eigenQcodon, 300960 P(t)
end of tree file.
Time used: 1:54
Model 2: PositiveSelection
TREE # 1
(1, 17, ((10, 11, 15, 2, 20, 21, 23, 26, 7, 8, 9), ((((12, 19, 24, 25, 27, 3), 13, (4, 6)), (16, 18, 5)), (14, 22)))); MP score: 206
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
29
0.036463 0.015239 0.072816 0.036483 0.073445 0.102571 0.097186 0.063609 0.016032 0.052851 0.062898 0.015031 0.064540 0.107898 0.104354 0.052774 0.079589 0.048917 0.080299 0.014027 0.041893 0.013144 0.078087 0.084178 0.105300 0.104140 0.091674 0.059606 0.022792 0.031680 0.040540 0.073648 0.100111 0.092165 0.071702 0.034193 3.426235 1.767202 0.427510 0.308133 1.524462
ntime & nrate & np: 36 3 41
Bounds (np=41):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 4.577061
np = 41
lnL0 = -2608.131235
Iterating by ming2
Initial: fx= 2608.131235
x= 0.03646 0.01524 0.07282 0.03648 0.07345 0.10257 0.09719 0.06361 0.01603 0.05285 0.06290 0.01503 0.06454 0.10790 0.10435 0.05277 0.07959 0.04892 0.08030 0.01403 0.04189 0.01314 0.07809 0.08418 0.10530 0.10414 0.09167 0.05961 0.02279 0.03168 0.04054 0.07365 0.10011 0.09217 0.07170 0.03419 3.42623 1.76720 0.42751 0.30813 1.52446
1 h-m-p 0.0000 0.0001 1397.7460 ++ 2508.107192 m 0.0001 87 | 1/41
2 h-m-p 0.0000 0.0000 2177.9380 ++ 2503.472040 m 0.0000 172 | 2/41
3 h-m-p 0.0000 0.0000 18179.6546 ++ 2499.370459 m 0.0000 256 | 3/41
4 h-m-p 0.0000 0.0000 65403.3782 ++ 2426.744481 m 0.0000 339 | 4/41
5 h-m-p 0.0000 0.0000 15453.1932 ++ 2404.307568 m 0.0000 421 | 5/41
6 h-m-p 0.0000 0.0000 8212.0511 ++ 2399.145319 m 0.0000 502 | 6/41
7 h-m-p 0.0000 0.0000 8055.0696 ++ 2367.019709 m 0.0000 582 | 7/41
8 h-m-p 0.0000 0.0000 7016.1209 ++ 2340.796013 m 0.0000 661 | 8/41
9 h-m-p 0.0000 0.0000 44511.8013 ++ 2339.103250 m 0.0000 739 | 9/41
10 h-m-p 0.0000 0.0000 184761.2814 ++ 2337.095139 m 0.0000 816 | 10/41
11 h-m-p 0.0000 0.0000 3876.7223 ++ 2320.002778 m 0.0000 892 | 11/41
12 h-m-p 0.0000 0.0000 6447.8877 ++ 2312.130377 m 0.0000 967 | 12/41
13 h-m-p 0.0000 0.0000 29783.2586 ++ 2303.229329 m 0.0000 1041 | 13/41
14 h-m-p 0.0000 0.0000 10344.8087 ++ 2284.924067 m 0.0000 1114 | 14/41
15 h-m-p 0.0000 0.0000 10263.3140 ++ 2282.071378 m 0.0000 1186 | 15/41
16 h-m-p 0.0000 0.0000 20068.5910 ++ 2280.878161 m 0.0000 1257 | 16/41
17 h-m-p 0.0000 0.0000 650216.8514 ++ 2279.331850 m 0.0000 1327 | 17/41
18 h-m-p 0.0000 0.0002 626.5265 ++CYYYYYCCCC 2255.114282 9 0.0002 1412 | 17/41
19 h-m-p 0.0000 0.0000 308.8090 CYCCC 2254.906009 4 0.0000 1487 | 17/41
20 h-m-p 0.0000 0.0007 286.0962 ++CYCCCC 2249.999156 5 0.0003 1566 | 17/41
21 h-m-p 0.0002 0.0012 63.3623 +YYCYCC 2246.066265 5 0.0008 1642 | 17/41
22 h-m-p 0.0002 0.0008 96.9147 +YYYYYC 2240.405180 5 0.0006 1716 | 17/41
23 h-m-p 0.0002 0.0008 119.7351 ++ 2231.912031 m 0.0008 1784 | 18/41
24 h-m-p 0.0002 0.0008 118.7925 CCC 2230.985894 2 0.0002 1856 | 18/41
25 h-m-p 0.0001 0.0006 208.2480 YCCCC 2228.846501 4 0.0003 1930 | 18/41
26 h-m-p 0.0002 0.0010 57.7303 +YCYCC 2227.491548 4 0.0006 2004 | 18/41
27 h-m-p 0.0007 0.0057 51.4326 +CYCCCC 2220.799994 5 0.0031 2081 | 18/41
28 h-m-p 0.0001 0.0003 353.8387 YCYCCC 2218.828254 5 0.0001 2156 | 18/41
29 h-m-p 0.0018 0.0329 28.0268 ++YCYCCC 2207.346334 5 0.0223 2233 | 17/41
30 h-m-p 0.0001 0.0005 598.2630 CCCC 2206.971109 3 0.0001 2306 | 17/41
31 h-m-p 0.0011 0.0122 45.3210 +YCYYCCC 2199.624691 6 0.0096 2385 | 17/41
32 h-m-p 0.0101 0.0504 32.6142 YCCC 2194.868193 3 0.0176 2458 | 17/41
33 h-m-p 0.0583 0.3944 9.8763 CYCC 2190.425245 3 0.0632 2531 | 17/41
34 h-m-p 0.0459 0.2296 5.6771 +YYYCCC 2183.850159 5 0.1635 2607 | 17/41
35 h-m-p 0.0705 0.3525 6.7074 YC 2179.239494 1 0.1758 2676 | 17/41
36 h-m-p 0.1210 0.6050 6.5870 CCC 2175.936317 2 0.1602 2748 | 17/41
37 h-m-p 0.1174 0.5870 3.8842 CCCC 2173.776412 3 0.1628 2822 | 17/41
38 h-m-p 0.2526 1.2631 2.1172 CCCCC 2171.067879 4 0.4397 2898 | 17/41
39 h-m-p 0.3923 1.9617 0.7038 CCCC 2168.863047 3 0.5944 2972 | 17/41
40 h-m-p 0.2570 1.2852 0.9284 YYC 2168.231908 2 0.2095 3042 | 17/41
41 h-m-p 0.3123 1.5616 0.5517 CCCC 2167.894153 3 0.3875 3116 | 17/41
42 h-m-p 0.2423 6.7387 0.8821 YC 2167.616686 1 0.5798 3185 | 17/41
43 h-m-p 1.0784 7.4962 0.4743 YYC 2167.440213 2 0.9239 3255 | 17/41
44 h-m-p 1.4538 8.0000 0.3014 YCC 2167.366819 2 0.8580 3326 | 17/41
45 h-m-p 0.7280 8.0000 0.3552 YCC 2167.262886 2 1.2352 3397 | 17/41
46 h-m-p 0.8106 4.9747 0.5412 YYC 2167.194257 2 0.6605 3467 | 17/41
47 h-m-p 0.7755 8.0000 0.4610 YC 2167.112039 1 1.4313 3536 | 17/41
48 h-m-p 1.6000 8.0000 0.3711 CC 2167.055599 1 1.5473 3606 | 17/41
49 h-m-p 1.1377 8.0000 0.5046 CC 2166.991366 1 1.5146 3676 | 17/41
50 h-m-p 1.5972 8.0000 0.4785 CC 2166.930014 1 2.3249 3746 | 17/41
51 h-m-p 1.6000 8.0000 0.5109 CC 2166.899326 1 1.7472 3816 | 17/41
52 h-m-p 1.6000 8.0000 0.4588 CC 2166.885990 1 1.3482 3886 | 17/41
53 h-m-p 1.6000 8.0000 0.3448 CC 2166.880096 1 2.0978 3956 | 17/41
54 h-m-p 1.6000 8.0000 0.3660 CC 2166.876270 1 2.1777 4026 | 17/41
55 h-m-p 1.6000 8.0000 0.3900 YC 2166.872740 1 3.0961 4095 | 17/41
56 h-m-p 1.6000 8.0000 0.4252 CC 2166.871456 1 2.2020 4165 | 17/41
57 h-m-p 1.6000 8.0000 0.4609 YC 2166.870451 1 3.5464 4234 | 17/41
58 h-m-p 1.6000 8.0000 0.5117 C 2166.870109 0 2.0071 4302 | 17/41
59 h-m-p 1.6000 8.0000 0.4220 Y 2166.869981 0 2.6217 4370 | 17/41
60 h-m-p 1.6000 8.0000 0.3682 Y 2166.869931 0 2.6428 4438 | 17/41
61 h-m-p 1.6000 8.0000 0.3847 Y 2166.869887 0 3.5741 4506 | 17/41
62 h-m-p 1.6000 8.0000 0.5091 C 2166.869874 0 2.1076 4574 | 17/41
63 h-m-p 1.6000 8.0000 0.3392 Y 2166.869867 0 3.2558 4642 | 17/41
64 h-m-p 1.6000 8.0000 0.5628 Y 2166.869863 0 3.0058 4710 | 17/41
65 h-m-p 1.6000 8.0000 0.5088 C 2166.869863 0 0.5318 4778 | 17/41
66 h-m-p 1.2966 8.0000 0.2087 Y 2166.869863 0 0.9016 4846 | 17/41
67 h-m-p 1.1502 8.0000 0.1636 +C 2166.869862 0 4.6006 4915 | 17/41
68 h-m-p 0.0436 6.9090 17.2761 -Y 2166.869862 0 0.0027 4984 | 17/41
69 h-m-p 0.9121 8.0000 0.0516 ----------------.. | 17/41
70 h-m-p 0.0002 0.0938 0.1104 -C 2166.869862 0 0.0000 5135 | 17/41
71 h-m-p 0.0004 0.1882 0.0506 -C 2166.869862 0 0.0000 5204 | 17/41
72 h-m-p 0.0037 1.8603 0.0263 ------C 2166.869862 0 0.0000 5278 | 17/41
73 h-m-p 0.0000 0.0000 175017.4950 ----.. | 17/41
74 h-m-p 0.0002 0.1102 0.0591 ----------
Out..
lnL = -2166.869862
5425 lfun, 21700 eigenQcodon, 585900 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -2181.411972 S = -2115.659103 -82.709483
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 168 patterns 5:35
did 20 / 168 patterns 5:35
did 30 / 168 patterns 5:35
did 40 / 168 patterns 5:35
did 50 / 168 patterns 5:35
did 60 / 168 patterns 5:35
did 70 / 168 patterns 5:35
did 80 / 168 patterns 5:35
did 90 / 168 patterns 5:35
did 100 / 168 patterns 5:35
did 110 / 168 patterns 5:35
did 120 / 168 patterns 5:35
did 130 / 168 patterns 5:35
did 140 / 168 patterns 5:35
did 150 / 168 patterns 5:35
did 160 / 168 patterns 5:35
did 168 / 168 patterns 5:36end of tree file.
Time used: 5:36
Model 7: beta
TREE # 1
(1, 17, ((10, 11, 15, 2, 20, 21, 23, 26, 7, 8, 9), ((((12, 19, 24, 25, 27, 3), 13, (4, 6)), (16, 18, 5)), (14, 22)))); MP score: 206
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
29
0.048768 0.059384 0.013051 0.068501 0.083755 0.026912 0.105385 0.025564 0.031592 0.018492 0.055086 0.077266 0.011718 0.103949 0.088996 0.015486 0.011002 0.035792 0.031331 0.038747 0.062071 0.019568 0.068692 0.027407 0.086791 0.012247 0.035680 0.017963 0.034566 0.034569 0.038302 0.099928 0.020146 0.058289 0.107358 0.033687 3.426247 0.506417 1.942759
ntime & nrate & np: 36 1 39
Bounds (np=39):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 7.523824
np = 39
lnL0 = -2575.273221
Iterating by ming2
Initial: fx= 2575.273221
x= 0.04877 0.05938 0.01305 0.06850 0.08376 0.02691 0.10538 0.02556 0.03159 0.01849 0.05509 0.07727 0.01172 0.10395 0.08900 0.01549 0.01100 0.03579 0.03133 0.03875 0.06207 0.01957 0.06869 0.02741 0.08679 0.01225 0.03568 0.01796 0.03457 0.03457 0.03830 0.09993 0.02015 0.05829 0.10736 0.03369 3.42625 0.50642 1.94276
1 h-m-p 0.0000 0.0000 2696.0963 ++ 2428.150469 m 0.0000 83 | 1/39
2 h-m-p 0.0000 0.0000 1336.9270 ++ 2393.414973 m 0.0000 164 | 2/39
3 h-m-p 0.0000 0.0000 142386.0846 ++ 2385.479294 m 0.0000 244 | 3/39
4 h-m-p 0.0000 0.0000 6341.8162 ++ 2359.079414 m 0.0000 323 | 4/39
5 h-m-p 0.0000 0.0000 2334.0929 ++ 2352.414127 m 0.0000 401 | 5/39
6 h-m-p 0.0000 0.0000 1342.9773 ++ 2349.525836 m 0.0000 478 | 6/39
7 h-m-p 0.0000 0.0000 5846.7482 ++ 2333.216693 m 0.0000 554 | 7/39
8 h-m-p 0.0000 0.0000 11201.5990 ++ 2305.489441 m 0.0000 629 | 8/39
9 h-m-p 0.0000 0.0000 6771.8780 ++ 2297.627147 m 0.0000 703 | 9/39
10 h-m-p 0.0000 0.0000 25188.9331 ++ 2281.706327 m 0.0000 776 | 10/39
11 h-m-p 0.0000 0.0000 6145.2086 ++ 2263.015530 m 0.0000 848 | 11/39
12 h-m-p 0.0000 0.0000 66409.3669 ++ 2245.842883 m 0.0000 919 | 12/39
13 h-m-p 0.0000 0.0000 6907.8233 ++ 2234.075203 m 0.0000 989 | 13/39
14 h-m-p 0.0000 0.0000 4665.1498 ++ 2223.507294 m 0.0000 1058 | 14/39
15 h-m-p 0.0000 0.0000 1971.5676 ++ 2216.495452 m 0.0000 1126 | 15/39
16 h-m-p 0.0000 0.0000 2390.1641 ++ 2212.408302 m 0.0000 1193 | 16/39
17 h-m-p 0.0000 0.0000 1462.4236 ++ 2205.668873 m 0.0000 1259 | 17/39
18 h-m-p 0.0000 0.0002 246.6347 +YYCYYCCC 2198.303745 7 0.0002 1336 | 17/39
19 h-m-p 0.0000 0.0001 216.0719 +YYYYYYYYC 2195.342317 8 0.0001 1409 | 17/39
20 h-m-p 0.0000 0.0000 742.6122 +YYCYC 2193.315223 4 0.0000 1479 | 17/39
21 h-m-p 0.0000 0.0001 437.6583 +YYYCYYCCC 2187.354830 8 0.0001 1556 | 17/39
22 h-m-p 0.0003 0.0024 156.2607 +YCCCCC 2175.974611 5 0.0013 1630 | 17/39
23 h-m-p 0.0000 0.0002 715.3001 +YYCCCC 2171.748099 5 0.0001 1703 | 17/39
24 h-m-p 0.0002 0.0011 111.7287 YCC 2171.277223 2 0.0001 1770 | 17/39
25 h-m-p 0.0013 0.0079 11.9739 YCCC 2171.144866 3 0.0008 1839 | 17/39
26 h-m-p 0.0005 0.0077 18.3841 CCC 2171.017292 2 0.0007 1907 | 17/39
27 h-m-p 0.0008 0.0249 15.4881 +CCC 2170.697428 2 0.0030 1976 | 17/39
28 h-m-p 0.0006 0.0058 76.3936 CCCC 2170.197012 3 0.0010 2046 | 17/39
29 h-m-p 0.0045 0.0419 16.6180 YCCC 2169.602296 3 0.0077 2115 | 17/39
30 h-m-p 0.0090 0.1953 14.3529 +CCC 2167.933086 2 0.0309 2184 | 17/39
31 h-m-p 0.0858 0.4289 0.6785 YYC 2167.689346 2 0.0705 2250 | 17/39
32 h-m-p 0.0402 0.5459 1.1886 +YCC 2167.286436 2 0.1133 2318 | 17/39
33 h-m-p 0.0596 0.4322 2.2589 CC 2166.879684 1 0.0666 2384 | 17/39
34 h-m-p 0.0847 0.4233 1.0940 CCCC 2166.465885 3 0.1032 2454 | 17/39
35 h-m-p 0.2309 1.1543 0.2728 YCCC 2165.892218 3 0.1719 2523 | 17/39
36 h-m-p 0.0626 0.7944 0.7487 +CYC 2165.596097 2 0.2315 2591 | 17/39
37 h-m-p 0.2522 3.4655 0.6875 CCC 2165.375983 2 0.2273 2659 | 17/39
38 h-m-p 0.1491 0.7453 0.8393 CCCC 2165.055331 3 0.1843 2729 | 17/39
39 h-m-p 0.3441 5.7348 0.4495 YCCC 2164.352613 3 0.6997 2798 | 17/39
40 h-m-p 0.9418 6.4797 0.3340 CYC 2164.108271 2 0.8977 2865 | 17/39
41 h-m-p 0.4964 3.0233 0.6039 CCCC 2163.861556 3 0.6988 2935 | 17/39
42 h-m-p 0.9726 4.8628 0.0977 YCC 2163.805382 2 0.6173 3002 | 17/39
43 h-m-p 0.5618 7.8256 0.1073 CCC 2163.762465 2 0.6950 3070 | 17/39
44 h-m-p 1.6000 8.0000 0.0354 YC 2163.748374 1 1.0200 3135 | 17/39
45 h-m-p 1.1808 8.0000 0.0305 C 2163.738627 0 1.1808 3199 | 17/39
46 h-m-p 0.8766 8.0000 0.0411 CC 2163.729888 1 1.3157 3265 | 17/39
47 h-m-p 1.6000 8.0000 0.0116 YC 2163.727931 1 1.0657 3330 | 17/39
48 h-m-p 1.3276 8.0000 0.0093 YC 2163.727831 1 0.7398 3395 | 17/39
49 h-m-p 1.6000 8.0000 0.0019 Y 2163.727811 0 0.8634 3459 | 17/39
50 h-m-p 1.6000 8.0000 0.0001 C 2163.727808 0 1.6000 3523 | 17/39
51 h-m-p 1.4773 8.0000 0.0001 C 2163.727808 0 1.2987 3587 | 17/39
52 h-m-p 1.6000 8.0000 0.0000 Y 2163.727808 0 1.6000 3651 | 17/39
53 h-m-p 1.6000 8.0000 0.0000 C 2163.727808 0 1.9641 3715 | 17/39
54 h-m-p 1.5248 8.0000 0.0000 Y 2163.727808 0 0.3812 3779 | 17/39
55 h-m-p 0.5925 8.0000 0.0000 -Y 2163.727808 0 0.0370 3844 | 17/39
56 h-m-p 0.0160 8.0000 0.0001 -------------.. | 17/39
57 h-m-p 0.0047 2.3444 0.0032 ------------
Out..
lnL = -2163.727808
3994 lfun, 43934 eigenQcodon, 1437840 P(t)
end of tree file.
Time used: 14:37
Model 8: beta&w>1
TREE # 1
(1, 17, ((10, 11, 15, 2, 20, 21, 23, 26, 7, 8, 9), ((((12, 19, 24, 25, 27, 3), 13, (4, 6)), (16, 18, 5)), (14, 22)))); MP score: 206
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
29
0.048998 0.062804 0.026421 0.062370 0.034631 0.069186 0.055576 0.018970 0.047381 0.094565 0.036664 0.053266 0.077269 0.026718 0.039381 0.038065 0.032317 0.023881 0.027889 0.056138 0.107755 0.025770 0.026452 0.018040 0.030521 0.074678 0.022097 0.042328 0.071245 0.045050 0.083966 0.034118 0.090895 0.055008 0.054054 0.072920 3.304654 0.900000 0.742834 1.982326 1.300000
ntime & nrate & np: 36 2 41
Bounds (np=41):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 5.975111
np = 41
lnL0 = -2517.639738
Iterating by ming2
Initial: fx= 2517.639738
x= 0.04900 0.06280 0.02642 0.06237 0.03463 0.06919 0.05558 0.01897 0.04738 0.09457 0.03666 0.05327 0.07727 0.02672 0.03938 0.03807 0.03232 0.02388 0.02789 0.05614 0.10775 0.02577 0.02645 0.01804 0.03052 0.07468 0.02210 0.04233 0.07125 0.04505 0.08397 0.03412 0.09090 0.05501 0.05405 0.07292 3.30465 0.90000 0.74283 1.98233 1.30000
1 h-m-p 0.0000 0.0001 1364.6329 ++ 2396.475287 m 0.0001 87 | 1/41
2 h-m-p 0.0000 0.0000 1998.0280 ++ 2392.670496 m 0.0000 172 | 2/41
3 h-m-p 0.0000 0.0000 22349.0310 ++ 2360.895641 m 0.0000 256 | 3/41
4 h-m-p 0.0000 0.0000 3048.2023 ++ 2360.083260 m 0.0000 339 | 4/41
5 h-m-p 0.0000 0.0000 2005.3809 ++ 2335.292636 m 0.0000 421 | 5/41
6 h-m-p 0.0000 0.0000 1339.0749 ++ 2330.005479 m 0.0000 502 | 6/41
7 h-m-p 0.0000 0.0000 2101.1707 ++ 2323.753508 m 0.0000 582 | 7/41
8 h-m-p 0.0000 0.0000 2355.1122 ++ 2306.281122 m 0.0000 661 | 8/41
9 h-m-p 0.0000 0.0000 41559.7388 ++ 2294.410943 m 0.0000 739 | 9/41
10 h-m-p 0.0000 0.0000 12691.3242 ++ 2289.570590 m 0.0000 816 | 10/41
11 h-m-p 0.0000 0.0000 3696.5280 ++ 2270.081349 m 0.0000 892 | 11/41
12 h-m-p 0.0000 0.0000 4404.3539 ++ 2261.403679 m 0.0000 967 | 12/41
13 h-m-p 0.0000 0.0000 3719.5650 ++ 2259.600404 m 0.0000 1041 | 13/41
14 h-m-p 0.0000 0.0000 4027.1163 ++ 2253.391857 m 0.0000 1114 | 14/41
15 h-m-p 0.0000 0.0000 4542.3682 ++ 2248.685857 m 0.0000 1186 | 15/41
16 h-m-p 0.0000 0.0000 3422.6386 ++ 2246.946778 m 0.0000 1257 | 16/41
17 h-m-p 0.0000 0.0000 942.6193 ++ 2243.858530 m 0.0000 1327 | 17/41
18 h-m-p 0.0001 0.0004 183.4059 +YYCYYCCC 2237.858096 7 0.0003 1407 | 17/41
19 h-m-p 0.0001 0.0003 436.7553 +YCCCC 2230.098519 4 0.0003 1483 | 17/41
20 h-m-p 0.0000 0.0000 1703.8488 +YYYCCC 2228.304912 5 0.0000 1559 | 17/41
21 h-m-p 0.0000 0.0001 1128.9933 +YYYYYYY 2225.438775 6 0.0001 1634 | 17/41
22 h-m-p 0.0001 0.0003 460.7349 +YCYCCC 2218.053719 5 0.0002 1712 | 17/41
23 h-m-p 0.0000 0.0001 3502.5601 +
QuantileBeta(0.15, 0.00500, 2.17427) = 1.211953e-160 2000 rounds
CYCCC 2199.100839 4 0.0001 1788 | 17/41
24 h-m-p 0.0001 0.0005 125.3765 YC 2197.054157 1 0.0002 1857 | 17/41
25 h-m-p 0.0004 0.0019 56.3293 CCCCC 2195.649858 4 0.0005 1933 | 17/41
26 h-m-p 0.0001 0.0004 113.5132 +YC 2194.606004 1 0.0002 2003 | 17/41
27 h-m-p 0.0005 0.0023 42.2411 CCCC 2194.196774 3 0.0005 2077 | 17/41
28 h-m-p 0.0003 0.0018 64.2511 CCC 2193.956501 2 0.0003 2149 | 17/41
29 h-m-p 0.0003 0.0067 86.5676 +++ 2180.150715 m 0.0067 2218 | 18/41
30 h-m-p 0.0108 0.0538 30.0659 YCCC 2179.741520 3 0.0066 2291 | 18/41
31 h-m-p 0.0035 0.0174 54.1659 CCC 2177.324052 2 0.0035 2362 | 18/41
32 h-m-p 0.0094 0.0472 10.7527 YCCC 2175.166791 3 0.0199 2434 | 18/41
33 h-m-p 0.0118 0.0592 3.1246 +YYCCCC 2172.656003 5 0.0364 2510 | 18/41
34 h-m-p 0.0094 0.0784 12.0912 CC 2171.623138 1 0.0124 2579 | 18/41
35 h-m-p 0.1589 0.7944 0.4437 CYC 2170.734820 2 0.1363 2649 | 18/41
36 h-m-p 0.1102 0.6065 0.5486 CCC 2170.136526 2 0.1332 2720 | 18/41
37 h-m-p 0.0651 0.5262 1.1222 YCCC 2168.798179 3 0.1308 2792 | 18/41
38 h-m-p 0.2880 3.7608 0.5098 +YCC 2168.141562 2 0.8368 2863 | 18/41
39 h-m-p 0.5150 2.5750 0.3061 YC 2167.960691 1 0.3058 2931 | 18/41
40 h-m-p 0.0953 0.8216 0.9823 CCC 2167.817441 2 0.1369 3002 | 18/41
41 h-m-p 0.4976 6.3414 0.2702 CC 2167.701234 1 0.6260 3071 | 18/41
42 h-m-p 0.5066 8.0000 0.3339 YCCC 2167.492564 3 0.9486 3143 | 18/41
43 h-m-p 0.2925 2.3302 1.0829 YCCC 2167.217800 3 0.4947 3215 | 18/41
44 h-m-p 0.4476 2.2381 0.8356 CYCCC 2166.812968 4 0.8413 3289 | 18/41
45 h-m-p 1.6000 8.0000 0.1312 YCCC 2166.649242 3 0.7599 3361 | 18/41
46 h-m-p 0.3577 8.0000 0.2787 CYC 2166.604044 2 0.4499 3431 | 18/41
47 h-m-p 1.5997 8.0000 0.0784 YCC 2166.558290 2 1.0330 3501 | 18/41
48 h-m-p 0.8537 8.0000 0.0948 CYC 2166.536867 2 0.8242 3571 | 18/41
49 h-m-p 1.6000 8.0000 0.0372 CC 2166.504476 1 1.3105 3640 | 18/41
50 h-m-p 1.0951 8.0000 0.0446 CC 2166.481072 1 0.9534 3709 | 18/41
51 h-m-p 0.6600 8.0000 0.0644 YC 2166.441038 1 1.1681 3777 | 18/41
52 h-m-p 1.6000 8.0000 0.0255 YC 2166.330289 1 3.9166 3845 | 18/41
53 h-m-p 1.6000 8.0000 0.0400 YC 2166.165148 1 3.3042 3913 | 18/41
54 h-m-p 0.5125 2.5627 0.0882 ++ 2165.846695 m 2.5627 3980 | 19/41
55 h-m-p 1.6000 8.0000 0.0179 CCC 2165.368298 2 2.1576 4051 | 19/41
56 h-m-p 1.6000 8.0000 0.0228 YCCC 2164.967268 3 3.4288 4122 | 19/41
57 h-m-p 1.6000 8.0000 0.0245 +YC 2164.427449 1 4.4002 4190 | 19/41
58 h-m-p 1.0413 8.0000 0.1035 YCCC 2164.085526 3 2.4341 4261 | 19/41
59 h-m-p 1.6000 8.0000 0.0186 YCCC 2163.894611 3 2.6465 4332 | 19/41
60 h-m-p 0.9254 8.0000 0.0532 YC 2163.807356 1 2.1258 4399 | 19/41
61 h-m-p 1.6000 8.0000 0.0073 YCC 2163.754139 2 3.1279 4468 | 19/41
62 h-m-p 1.2714 8.0000 0.0178 CC 2163.729635 1 1.7858 4536 | 19/41
63 h-m-p 1.6000 8.0000 0.0085 YC 2163.728246 1 1.2578 4603 | 19/41
64 h-m-p 1.6000 8.0000 0.0010 C 2163.728102 0 1.4580 4669 | 19/41
65 h-m-p 1.6000 8.0000 0.0003 Y 2163.728090 0 1.2282 4735 | 19/41
66 h-m-p 1.6000 8.0000 0.0001 C 2163.728090 0 1.3005 4801 | 19/41
67 h-m-p 1.6000 8.0000 0.0000 Y 2163.728090 0 0.9433 4867 | 19/41
68 h-m-p 0.6477 8.0000 0.0000 Y 2163.728090 0 0.2727 4933 | 19/41
69 h-m-p 0.0199 8.0000 0.0002 Y 2163.728090 0 0.0199 4999 | 19/41
70 h-m-p 0.0774 8.0000 0.0001 --------C 2163.728090 0 0.0000 5073
Out..
lnL = -2163.728090
5074 lfun, 60888 eigenQcodon, 2009304 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -2185.721249 S = -2116.615197 -68.229919
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 168 patterns 27:15
did 20 / 168 patterns 27:15
did 30 / 168 patterns 27:15
did 40 / 168 patterns 27:15
did 50 / 168 patterns 27:15
did 60 / 168 patterns 27:16
did 70 / 168 patterns 27:16
did 80 / 168 patterns 27:16
did 90 / 168 patterns 27:16
did 100 / 168 patterns 27:16
did 110 / 168 patterns 27:17
did 120 / 168 patterns 27:17
did 130 / 168 patterns 27:17
did 140 / 168 patterns 27:17
did 150 / 168 patterns 27:17
did 160 / 168 patterns 27:18
did 168 / 168 patterns 27:18end of tree file.
Time used: 27:18
The loglikelihoods for models M1, M2, M7 and M8 are -2166.869861 -2166.869862 -2163.727808 -2163.728090 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
681_nsp6_VIPR_ALG4_381354058_11085_11945_1_NA_NA_Rat_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIIAAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
JHM_WU_Dns2_nsp6_VIPR_ALG4_397136010_11107_11967_1_1947_08_14_USA_Unknown_Murine_coronavirus SKRTRVIKGTCCWILASTFLVCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
MHV_1_nsp6_VIPR_ALG4_225403253_11063_11923_1_NA_USA_Mouse_Murine_coronavirus SKRTRVVKGTCCWILASTFLVCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
MHV_2_nsp6_VIPR_ALG4_6625760_10956_11816_1_NA_NA_Unknown_Murine_coronavirus SKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLVK
MHV_3_nsp6_VIPR_ALG4_225403263_11062_11922_1_NA_USA_Mouse_Murine_coronavirus SKRTRVVKGTCCWILASTFLVCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
MHV_A59_ORF1ab_YP_009915693_1_NA_NA_Unknown_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp6_VIPR_ALG4_530291001_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp6_VIPR_ALG4_530291025_11093_11953_1_2012_10_25_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp6_VIPR_ALG4_530291013_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp6_VIPR_ALG4_530290989_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
MHV_JHM_IA_nsp6_VIPR_ALG4_225403289_11107_11967_1_NA_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
MHV_MI_nsp6_VIPR_ALG4_293330423_11047_11907_1_1994_Australia_Mouse_Murine_coronavirus SSRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
MHV_S_3239_17_nsp6_VIPR_ALG4_380706996_11122_11982_1_NA_NA_Unknown_Murine_coronavirus SKRTRVIKGTFCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
ML_10_nsp6_VIPR_ALG4_7769352_11109_11969_1_NA_NA_Unknown_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
ML_11_nsp6_VIPR_ALG4_7739594_10956_11816_1_NA_NA_Unknown_Murine_coronavirus SKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLVK
Parker_ORF1ab_YP_009924373_1_NA_NA_Rat_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIIAAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
Penn_97_1_nsp6_VIPR_ALG4_7769341_10956_11816_1_NA_NA_Unknown_Murine_coronavirus SKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLVK
RJHM_A_nsp6_VIPR_ALG4_225403216_11085_11945_1_NA_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
RA59_SJHM_nsp6_VIPR_ALG4_225403223_11079_11939_1_NA_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
RA59_R13_nsp6_VIPR_ALG4_225403197_11095_11955_1_2006_01_01_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
S_nsp6_VIPR_ALG4_298199703_11122_11982_1_NA_USA_Mouse_Murine_coronavirus SKRTRVIKGTFCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
inf_MHV_A59_nsp6_VIPR_ALG4_225403278_11093_11953_1_NA_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
UNKNOWN_AC_000192_nsp6_VIPR_ALG4_YP_209230_1_11132_11995_1_NA_NA_Unknown_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVIFAMLLIK
SA59_RJHM_nsp6_VIPR_ALG4_225403245_11085_11945_1_NA_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
repA59_RJHM_nsp6_VIPR_ALG4_225403233_11090_11950_1_NA_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
repJHM_RA59_nsp6_VIPR_ALG4_225403300_11068_11928_1_NA_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIK
*.****:*** *******:*.****:************************** *****:*
681_nsp6_VIPR_ALG4_381354058_11085_11945_1_NA_NA_Rat_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
JHM_WU_Dns2_nsp6_VIPR_ALG4_397136010_11107_11967_1_1947_08_14_USA_Unknown_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
MHV_1_nsp6_VIPR_ALG4_225403253_11063_11923_1_NA_USA_Mouse_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
MHV_2_nsp6_VIPR_ALG4_6625760_10956_11816_1_NA_NA_Unknown_Murine_coronavirus HKHLYLTMFIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
MHV_3_nsp6_VIPR_ALG4_225403263_11062_11922_1_NA_USA_Mouse_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
MHV_A59_ORF1ab_YP_009915693_1_NA_NA_Unknown_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp6_VIPR_ALG4_530291001_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp6_VIPR_ALG4_530291025_11093_11953_1_2012_10_25_USA_Mouse_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp6_VIPR_ALG4_530291013_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp6_VIPR_ALG4_530290989_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
MHV_JHM_IA_nsp6_VIPR_ALG4_225403289_11107_11967_1_NA_USA_Mouse_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
MHV_MI_nsp6_VIPR_ALG4_293330423_11047_11907_1_1994_Australia_Mouse_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
MHV_S_3239_17_nsp6_VIPR_ALG4_380706996_11122_11982_1_NA_NA_Unknown_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
ML_10_nsp6_VIPR_ALG4_7769352_11109_11969_1_NA_NA_Unknown_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
ML_11_nsp6_VIPR_ALG4_7739594_10956_11816_1_NA_NA_Unknown_Murine_coronavirus HKHLYLTMFIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
Parker_ORF1ab_YP_009924373_1_NA_NA_Rat_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
Penn_97_1_nsp6_VIPR_ALG4_7769341_10956_11816_1_NA_NA_Unknown_Murine_coronavirus HKHLYLTMFIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
RJHM_A_nsp6_VIPR_ALG4_225403216_11085_11945_1_NA_USA_Mouse_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
RA59_SJHM_nsp6_VIPR_ALG4_225403223_11079_11939_1_NA_USA_Mouse_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
RA59_R13_nsp6_VIPR_ALG4_225403197_11095_11955_1_2006_01_01_USA_Mouse_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
S_nsp6_VIPR_ALG4_298199703_11122_11982_1_NA_USA_Mouse_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
inf_MHV_A59_nsp6_VIPR_ALG4_225403278_11093_11953_1_NA_USA_Mouse_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
UNKNOWN_AC_000192_nsp6_VIPR_ALG4_YP_209230_1_11132_11995_1_NA_NA_Unknown_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVVGYKQSFRGLAYAWLSYFVPAVDYTYMDEVLYGVVL
SA59_RJHM_nsp6_VIPR_ALG4_225403245_11085_11945_1_NA_USA_Mouse_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
repA59_RJHM_nsp6_VIPR_ALG4_225403233_11090_11950_1_NA_USA_Mouse_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
repJHM_RA59_nsp6_VIPR_ALG4_225403300_11068_11928_1_NA_USA_Mouse_Murine_coronavirus HKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVL
********:**************** **************:*******************
681_nsp6_VIPR_ALG4_381354058_11085_11945_1_NA_NA_Rat_Murine_coronavirus LVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus LVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
JHM_WU_Dns2_nsp6_VIPR_ALG4_397136010_11107_11967_1_1947_08_14_USA_Unknown_Murine_coronavirus LVAMVFVTMRSINHDVFSTMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
MHV_1_nsp6_VIPR_ALG4_225403253_11063_11923_1_NA_USA_Mouse_Murine_coronavirus LVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLASLFGTYTWTTML
MHV_2_nsp6_VIPR_ALG4_6625760_10956_11816_1_NA_NA_Unknown_Murine_coronavirus LVAMVFVTMRSINHDVFSVMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
MHV_3_nsp6_VIPR_ALG4_225403263_11062_11922_1_NA_USA_Mouse_Murine_coronavirus LVAMVFVTMRSINHDVFSVMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
MHV_A59_ORF1ab_YP_009915693_1_NA_NA_Unknown_Murine_coronavirus LVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp6_VIPR_ALG4_530291001_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus LVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp6_VIPR_ALG4_530291025_11093_11953_1_2012_10_25_USA_Mouse_Murine_coronavirus LVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp6_VIPR_ALG4_530291013_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus LVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp6_VIPR_ALG4_530290989_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus LVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
MHV_JHM_IA_nsp6_VIPR_ALG4_225403289_11107_11967_1_NA_USA_Mouse_Murine_coronavirus LVAMVFVTMRSINHDVFSTMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
MHV_MI_nsp6_VIPR_ALG4_293330423_11047_11907_1_1994_Australia_Mouse_Murine_coronavirus LVAMVFVTMRSINHDVFSIMFLVGRFVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
MHV_S_3239_17_nsp6_VIPR_ALG4_380706996_11122_11982_1_NA_NA_Unknown_Murine_coronavirus LFAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
ML_10_nsp6_VIPR_ALG4_7769352_11109_11969_1_NA_NA_Unknown_Murine_coronavirus LVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
ML_11_nsp6_VIPR_ALG4_7739594_10956_11816_1_NA_NA_Unknown_Murine_coronavirus LVAMVFVTMRSINHDVFSVMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
Parker_ORF1ab_YP_009924373_1_NA_NA_Rat_Murine_coronavirus LIAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
Penn_97_1_nsp6_VIPR_ALG4_7769341_10956_11816_1_NA_NA_Unknown_Murine_coronavirus LVAMVFVTMRSINHDVFSVMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
RJHM_A_nsp6_VIPR_ALG4_225403216_11085_11945_1_NA_USA_Mouse_Murine_coronavirus LVAMVFVTMRSINHDVFSTMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
RA59_SJHM_nsp6_VIPR_ALG4_225403223_11079_11939_1_NA_USA_Mouse_Murine_coronavirus LVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
RA59_R13_nsp6_VIPR_ALG4_225403197_11095_11955_1_2006_01_01_USA_Mouse_Murine_coronavirus LVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
S_nsp6_VIPR_ALG4_298199703_11122_11982_1_NA_USA_Mouse_Murine_coronavirus LFAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
inf_MHV_A59_nsp6_VIPR_ALG4_225403278_11093_11953_1_NA_USA_Mouse_Murine_coronavirus LVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
UNKNOWN_AC_000192_nsp6_VIPR_ALG4_YP_209230_1_11132_11995_1_NA_NA_Unknown_Murine_coronavirus LVAMVFVTMRSINHDVFSTMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
SA59_RJHM_nsp6_VIPR_ALG4_225403245_11085_11945_1_NA_USA_Mouse_Murine_coronavirus LVAMVFVTMRSINHDVFSTMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
repA59_RJHM_nsp6_VIPR_ALG4_225403233_11090_11950_1_NA_USA_Mouse_Murine_coronavirus LVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
repJHM_RA59_nsp6_VIPR_ALG4_225403300_11068_11928_1_NA_USA_Mouse_Murine_coronavirus LVAMVFVTMRSINHDVFSTMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTML
*.**************** ******:*********************:************
681_nsp6_VIPR_ALG4_381354058_11085_11945_1_NA_NA_Rat_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVY
A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVY
JHM_WU_Dns2_nsp6_VIPR_ALG4_397136010_11107_11967_1_1947_08_14_USA_Unknown_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVY
MHV_1_nsp6_VIPR_ALG4_225403253_11063_11923_1_NA_USA_Mouse_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVY
MHV_2_nsp6_VIPR_ALG4_6625760_10956_11816_1_NA_NA_Unknown_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVY
MHV_3_nsp6_VIPR_ALG4_225403263_11062_11922_1_NA_USA_Mouse_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLGYLCIGYVCCCYWGVLSLLNSIFRMPLGVY
MHV_A59_ORF1ab_YP_009915693_1_NA_NA_Unknown_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVY
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp6_VIPR_ALG4_530291001_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVY
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp6_VIPR_ALG4_530291025_11093_11953_1_2012_10_25_USA_Mouse_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVY
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp6_VIPR_ALG4_530291013_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVY
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp6_VIPR_ALG4_530290989_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVY
MHV_JHM_IA_nsp6_VIPR_ALG4_225403289_11107_11967_1_NA_USA_Mouse_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVY
MHV_MI_nsp6_VIPR_ALG4_293330423_11047_11907_1_1994_Australia_Mouse_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLGYLCIGYVCCCYWGVLSLLNSISRMPLGVY
MHV_S_3239_17_nsp6_VIPR_ALG4_380706996_11122_11982_1_NA_NA_Unknown_Murine_coronavirus SLRTAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVY
ML_10_nsp6_VIPR_ALG4_7769352_11109_11969_1_NA_NA_Unknown_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPFGVY
ML_11_nsp6_VIPR_ALG4_7739594_10956_11816_1_NA_NA_Unknown_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVY
Parker_ORF1ab_YP_009924373_1_NA_NA_Rat_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVY
Penn_97_1_nsp6_VIPR_ALG4_7769341_10956_11816_1_NA_NA_Unknown_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVY
RJHM_A_nsp6_VIPR_ALG4_225403216_11085_11945_1_NA_USA_Mouse_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVY
RA59_SJHM_nsp6_VIPR_ALG4_225403223_11079_11939_1_NA_USA_Mouse_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVY
RA59_R13_nsp6_VIPR_ALG4_225403197_11095_11955_1_2006_01_01_USA_Mouse_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVY
S_nsp6_VIPR_ALG4_298199703_11122_11982_1_NA_USA_Mouse_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVY
inf_MHV_A59_nsp6_VIPR_ALG4_225403278_11093_11953_1_NA_USA_Mouse_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVY
UNKNOWN_AC_000192_nsp6_VIPR_ALG4_YP_209230_1_11132_11995_1_NA_NA_Unknown_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVY
SA59_RJHM_nsp6_VIPR_ALG4_225403245_11085_11945_1_NA_USA_Mouse_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVY
repA59_RJHM_nsp6_VIPR_ALG4_225403233_11090_11950_1_NA_USA_Mouse_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVY
repJHM_RA59_nsp6_VIPR_ALG4_225403300_11068_11928_1_NA_USA_Mouse_Murine_coronavirus SLATAKVIAKWLAVNVLYFTDIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVY
** ******************:**:*****.*************:******* ***:***
681_nsp6_VIPR_ALG4_381354058_11085_11945_1_NA_NA_Rat_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ
A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
JHM_WU_Dns2_nsp6_VIPR_ALG4_397136010_11107_11967_1_1947_08_14_USA_Unknown_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
MHV_1_nsp6_VIPR_ALG4_225403253_11063_11923_1_NA_USA_Mouse_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
MHV_2_nsp6_VIPR_ALG4_6625760_10956_11816_1_NA_NA_Unknown_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ
MHV_3_nsp6_VIPR_ALG4_225403263_11062_11922_1_NA_USA_Mouse_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
MHV_A59_ORF1ab_YP_009915693_1_NA_NA_Unknown_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp6_VIPR_ALG4_530291001_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp6_VIPR_ALG4_530291025_11093_11953_1_2012_10_25_USA_Mouse_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp6_VIPR_ALG4_530291013_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp6_VIPR_ALG4_530290989_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
MHV_JHM_IA_nsp6_VIPR_ALG4_225403289_11107_11967_1_NA_USA_Mouse_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
MHV_MI_nsp6_VIPR_ALG4_293330423_11047_11907_1_1994_Australia_Mouse_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
MHV_S_3239_17_nsp6_VIPR_ALG4_380706996_11122_11982_1_NA_NA_Unknown_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
ML_10_nsp6_VIPR_ALG4_7769352_11109_11969_1_NA_NA_Unknown_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
ML_11_nsp6_VIPR_ALG4_7739594_10956_11816_1_NA_NA_Unknown_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ
Parker_ORF1ab_YP_009924373_1_NA_NA_Rat_Murine_coronavirus NYKISVQELRYMNANGLRPPKNSFEALVLNFKLLGIGGVPVIEVSQIQ
Penn_97_1_nsp6_VIPR_ALG4_7769341_10956_11816_1_NA_NA_Unknown_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ
RJHM_A_nsp6_VIPR_ALG4_225403216_11085_11945_1_NA_USA_Mouse_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
RA59_SJHM_nsp6_VIPR_ALG4_225403223_11079_11939_1_NA_USA_Mouse_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
RA59_R13_nsp6_VIPR_ALG4_225403197_11095_11955_1_2006_01_01_USA_Mouse_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
S_nsp6_VIPR_ALG4_298199703_11122_11982_1_NA_USA_Mouse_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
inf_MHV_A59_nsp6_VIPR_ALG4_225403278_11093_11953_1_NA_USA_Mouse_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
UNKNOWN_AC_000192_nsp6_VIPR_ALG4_YP_209230_1_11132_11995_1_NA_NA_Unknown_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
SA59_RJHM_nsp6_VIPR_ALG4_225403245_11085_11945_1_NA_USA_Mouse_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
repA59_RJHM_nsp6_VIPR_ALG4_225403233_11090_11950_1_NA_USA_Mouse_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
repJHM_RA59_nsp6_VIPR_ALG4_225403300_11068_11928_1_NA_USA_Mouse_Murine_coronavirus NYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
********************:******:********************
>681_nsp6_VIPR_ALG4_381354058_11085_11945_1_NA_NA_Rat_Murine_coronavirus TCAAAGCGCACAAGAGTTATTAAAGGCACATGTTGCTGGATATTGGCTTCAACATTTCTGTTTTGTAGCATTATCGCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGCGTGACATTGTGTGCACTTTGCTTTGTAAGCTTTGCTATGTTGTTGATCAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTGTTATGCACATTGTTTTACACCAACTATTTGGTTGTG---TATAAACAGAGTTTTAGAGGCCTTGCTTATGCTTGGCTTTCACATTTTGTCCCTGCTGTAGATTATACATACATGGATGAAGTTTTATATGGTGTTGTGTTGCTAGTCGCTATGGTGTTTGTCACCATGCGTAGCATAAACCACGACGTATTCTCTATTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCTATGTGGTATTTTGGTGCTAATTTAGAGGAAGAGGTACTATTGTTCCTCACATCCCTATTTGGCACGTACACATGGACCACCATGTTGTCATTGGCTACGGCCAAGGTCATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAATAAAATTAGTTCTTTTGAGCTATTTGTGTATAGGTTATGTGTGTTGTTGTTATTGGGGCGTCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTATAATTATAAAATCTCCGTGCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCCAGAAATAGTTTTGAAGCCCTGGTGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAGATTCAA >A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus TCAAAGCGCACAAGAGTTATAAAAGGTACATGTTGCTGGATATTGGCTTCAACGTTTTTGTTCTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATCAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTGTTATGCACACTGTTTTACACCAACTATTTGGTTGTG---TACAAACAGAGTTTTAGAGGTCTAGCTTATGCTTGGCTTTCACACTTTGTCCCTGCTGTAGATTATACATATATGGATGAAGTTTTATATGGTGTTGTGTTGCTAGTAGCTATGGTGTTTGTTACCATGCGTAGCATAAACCACGACGTCTTTTCTATTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCCATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTACTATTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGTTGTCATTGGCTACCGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAATTAAATTAGTTCTTTTGAGCTACTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGAATCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTTCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCTAGAAATAGTTTTGAGGCCCTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >JHM_WU_Dns2_nsp6_VIPR_ALG4_397136010_11107_11967_1_1947_08_14_USA_Unknown_Murine_coronavirus TCAAAGCGCACAAGAGTTATTAAAGGTACATGTTGCTGGATATTGGCTTCAACATTTTTGGTTTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACTCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATTAAGCATAAGCATTTGTATTTAACCATGTATATTATGCCTGTTTTATGCACATTGTTTTACACGAACTATTTGGTTGTG---TATAAACAGAGTTTTAGAGGCTTAGCATATGCTTGGCTTTCACACTTTGTCCCTGCCGTAGACTATACTTACATGGATGAAGTATTATATGGTGTCGTGTTGCTAGTCGCTATGGTATTTGTTACCATGCGCAGCATAAATCACGACGTCTTTTCTACTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCTATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTTCTGTTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGCTGTCATTGGCTACTGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTATTTCACAGACATACCGCAAATTAAATTAGTTCTCTTGAGCTATTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGCGTCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTGCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCCAGAAATAGTTTTGAAGCCTTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >MHV_1_nsp6_VIPR_ALG4_225403253_11063_11923_1_NA_USA_Mouse_Murine_coronavirus TCAAAGCGCACAAGAGTTGTTAAAGGTACATGTTGCTGGATACTGGCTTCAACATTCTTGGTTTGCAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGGGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATTAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTTTTGTGTACATTGTTTTACACGAACTATTTGGTCGTG---TATAAACAGAGTTTTAGAGGCTTAGCATATGCTTGGCTTTCGCACTTTGTCCCTGCTGTAGATTATACTTACATGGACGAAGTCTTATATGGTGTCGTGTTGCTAGTTGCTATGGTGTTTGTCACCATGCGCAGCATAAATCACGACGTCTTCTCTATTATGTTCTTGGTAGGTAGACTTGTTAGCCTGGTGTCTATGTGGTACTTTGGAGCTAACCTAGAGGAGGAGGTCCTGCTGTTCCTCGCATCCCTATTTGGCACGTACACATGGACTACTATGTTGTCATTGGCTACCGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAATTAAATTAGTTCTTTTGAGCTATTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGCGTCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTGCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCCAGAAATAGTTTTGAGGCCCTGATGCTTAACTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >MHV_2_nsp6_VIPR_ALG4_6625760_10956_11816_1_NA_NA_Unknown_Murine_coronavirus TCAAAGCGCACAAGAGTTGTTAAAGGTACATGTTGCTGGATATTGGCTTCAACATTATTGTTTTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGTGTGACATTGTGTGCACTTTGCTTTGTGAGCTTTGCTATGCTGTTGGTTAAGCATAAGCATTTGTATTTAACTATGTTTATTATGCCGGTTTTGTGCACATTGTTTTACACGAACTATTTAGTTGTG---TATAAACAGAGTTTTAGAGGCCTAGCTTATGCATGGCTTTCACACTTTGTCCCTGCTGTAGATTATACATACATGGATGAAGTTTTATATGGTGTCGTGTTGCTAGTAGCTATGGTTTTTGTTACCATGCGCAGCATAAATCACGATGTCTTCTCTGTTATGTTCTTGGTTGGTAGACTTGTCAGCTTGGTGTCTATGTGGTACTTTGGGGCCAATTTAGAGGAGGAGGTGCTATTGTTCCTCACATCACTCTTTGGCACGTATACATGGACTACTATGCTGTCATTGGCTACTGCTAAGGTCATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAGTTAAATTAGTTCTTTTGAGCTATTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGCGTCTTGTCACTCCTTAATAGCATTTTTAGGATGCCGTTGGGTGTCTATAATTATAAAATCTCCGTGCAGGAGTTACGCTATATGAATGCTAATGGCTTGCGCCCGCCCAGAAATAGTTTTGAAGCCCTAGTGCTTAATTTTAAATTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >MHV_3_nsp6_VIPR_ALG4_225403263_11062_11922_1_NA_USA_Mouse_Murine_coronavirus TCAAAGCGCACAAGAGTTGTTAAAGGTACATGTTGCTGGATACTGGCTTCAACATTCTTGGTTTGCAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCACATGTTGGGGGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATTAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTTTTGTGTACATTGTTTTACACGAACTATTTGGTCGTG---TATAAACAGAGTTTTAGAGGCTTAGCATATGCTTGGCTTTCGCACTTTGTCCCTGCTGTAGATTATACTTACATGGACGAAGTCTTATATGGTGTCGTGTTGCTAGTTGCTATGGTGTTTGTCACCATGCGTAGCATAAACCACGACGTCTTCTCTGTTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTGTCTATGTGGTACTTTGGAGCCAATTTAGAGGAAGAGGTCCTATTGTTCCTCACATCCCTATTTGGCACGTACACGTGGACCACCATGCTGTCATTGGCTACTGCTAAGGTTATTGCTAAGTGGTTGGCTGTGAATGTCTTGTACTTCACAGATGTACCGCAAATTAAATTAGTCCTTTTGGGCTATTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGCGTCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTATAATTATAAAATCTCCGTTCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCCAGAAATAGCTTTGAAGCCCTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >MHV_A59_ORF1ab_YP_009915693_1_NA_NA_Unknown_Murine_coronavirus TCAAAGCGCACAAGAGTTATAAAAGGTACATGTTGCTGGATATTGGCTTCAACGTTTTTGTTCTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATCAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTGTTATGCACACTGTTTTACACCAACTATTTGGTTGTG---TACAAACAGAGTTTTAGAGGTCTAGCTTATGCTTGGCTTTCACACTTTGTCCCTGCTGTAGATTATACATATATGGATGAAGTTTTATATGGTGTTGTGTTGCTAGTAGCTATGGTGTTTGTTACCATGCGTAGCATAAACCACGACGTCTTTTCTATTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCCATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTACTATTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGTTGTCATTGGCTACCGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAATTAAATTAGTTCTTTTGAGCTACTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGAATCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTTCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCTAGAAATAGTTTTGAGGCCCTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp6_VIPR_ALG4_530291001_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus TCAAAGCGCACAAGAGTTATAAAAGGTACATGTTGCTGGATATTGGCTTCAACGTTTTTGTTCTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATCAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTGTTATGCACACTGTTTTACACCAACTATTTGGTTGTG---TACAAACAGAGTTTTAGAGGTCTAGCTTATGCTTGGCTTTCACACTTTGTCCCTGCTGTAGATTATACATATATGGATGAAGTTTTATATGGTGTTGTGTTGCTAGTAGCTATGGTGTTTGTTACCATGCGTAGCATAAACCACGACGTCTTTTCTATTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCCATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTACTATTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGTTGTCATTGGCTACCGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAATTAAATTAGTTCTTTTGAGCTACTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGAATCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTTCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCTAGAAATAGTTTTGAGGCCCTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp6_VIPR_ALG4_530291025_11093_11953_1_2012_10_25_USA_Mouse_Murine_coronavirus TCAAAGCGCACAAGAGTTATAAAAGGTACATGTTGCTGGATATTGGCTTCAACGTTTTTGTTCTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATCAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTGTTATGCACACTGTTTTACACCAACTATTTGGTTGTG---TACAAACAGAGTTTTAGAGGTCTAGCTTATGCTTGGCTTTCACACTTTGTCCCTGCTGTAGATTATACATATATGGATGAAGTTTTATATGGTGTTGTGTTGCTAGTAGCTATGGTGTTTGTTACCATGCGTAGCATAAACCACGACGTCTTTTCTATTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCCATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTACTATTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGTTGTCATTGGCTACCGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAATTAAATTAGTTCTTTTGAGCTACTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGAATCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTTCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCTAGAAATAGTTTTGAGGCCCTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >MHV_BHKR_lab_USA_icA59_L94P_2012_nsp6_VIPR_ALG4_530291013_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus TCAAAGCGCACAAGAGTTATAAAAGGTACATGTTGCTGGATATTGGCTTCAACGTTTTTGTTCTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATCAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTGTTATGCACACTGTTTTACACCAACTATTTGGTTGTG---TACAAACAGAGTTTTAGAGGTCTAGCTTATGCTTGGCTTTCACACTTTGTCCCTGCTGTAGATTATACATATATGGATGAAGTTTTATATGGTGTTGTGTTGCTAGTAGCTATGGTGTTTGTTACCATGCGTAGCATAAACCACGACGTCTTTTCTATTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCCATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTACTATTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGTTGTCATTGGCTACCGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAATTAAATTAGTTCTTTTGAGCTACTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGAATCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTTCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCTAGAAATAGTTTTGAGGCCCTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >MHV_BHKR_lab_USA_infA59_H126A_2012_nsp6_VIPR_ALG4_530290989_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus TCAAAGCGCACAAGAGTTATAAAAGGTACATGTTGCTGGATATTGGCTTCAACGTTTTTGTTCTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATCAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTGTTATGCACACTGTTTTACACCAACTATTTGGTTGTG---TACAAACAGAGTTTTAGAGGTCTAGCTTATGCTTGGCTTTCACACTTTGTCCCTGCTGTAGATTATACATATATGGATGAAGTTTTATATGGTGTTGTGTTGCTAGTAGCTATGGTGTTTGTTACCATGCGTAGCATAAACCACGACGTCTTTTCTATTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCCATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTACTATTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGTTGTCATTGGCTACCGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAATTAAATTAGTTCTTTTGAGCTACTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGAATCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTTCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCTAGAAATAGTTTTGAGGCCCTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >MHV_JHM_IA_nsp6_VIPR_ALG4_225403289_11107_11967_1_NA_USA_Mouse_Murine_coronavirus TCAAAGCGCACAAGAGTTATTAAAGGTACATGTTGCTGGATATTGGCTTCAACATTTTTGTTTTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACTCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATTAAGCATAAGCATTTGTATTTAACCATGTATATTATGCCTGTTTTATGCACATTGTTTTACACGAACTATTTGGTTGTG---TATAAACAGAGTTTTAGAGGCTTAGCATATGCTTGGCTTTCACACTTTGTCCCTGCCGTAGACTATACTTACATGGATGAAGTATTATATGGTGTCGTGTTGCTAGTCGCTATGGTATTTGTTACCATGCGCAGCATAAATCACGACGTCTTTTCTACTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCTATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTTCTGTTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGCTGTCATTGGCTACTGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTATTTCACAGACATACCGCAAATTAAATTAGTTCTCTTGAGCTATTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGCGTCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTGCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCCAGAAATAGTTTTGAAGCCTTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >MHV_MI_nsp6_VIPR_ALG4_293330423_11047_11907_1_1994_Australia_Mouse_Murine_coronavirus TCCAGCCGCACAAGAGTTATTAAAGGTACATGTTGCTGGATATTGGCTTCAACCTTTTTGTTTTGTAGCATTATTTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGTGTGACATTGTGTGCGCTTTGTTTTGTAAGCTTTGCTATGCTGTTGATTAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTGTTATGCACATTGTTTTACACTAACTATTTGGTTGTG---TATAAACAGAGTTTTAGGGGCTTAGCATATGCTTGGCTTTCGCACTTTGTCCCTGCCGTAGATTATACTTACATGGATGAAGTACTATATGGTGTCGTGTTGCTAGTTGCTATGGTGTTTGTCACCATGCGTAGCATAAACCACGACGTCTTTTCTATTATGTTCTTGGTTGGTAGATTTGTCAGCTTGGTGTCTATGTGGTACTTTGGAGCTAACCTAGAGGAGGAGGTCCTATTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGTTGTCATTGGCTACCGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGATGTACCGCAAATTAAATTAGTCCTTTTGGGCTATTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGCGTCTTGTCACTCCTTAATAGCATTTCTAGGATGCCGTTGGGCGTCTACAATTATAAAATCTCCGTTCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCCAGAAATAGTTTTGAGGCCCTCATGCTTAATTTTAAGCTATTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >MHV_S_3239_17_nsp6_VIPR_ALG4_380706996_11122_11982_1_NA_NA_Unknown_Murine_coronavirus TCAAAGCGCACAAGAGTTATTAAAGGTACATTTTGCTGGATATTGGCCTCAACATTTTTGTTTTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATCAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTGTTATGTACATTGTTTTACACCAACTATTTGGTTGTG---TACAAACAGAGCTTTAGAGGTCTAGCGTATGCTTGGCTTTCACATTTTGTCCCTGCTGTAGATTATACATACATGGATGAAGTTTTATATGGTGTTGTGTTGCTATTTGCTATGGTGTTTGTCACCATGCGTAGCATAAATCACGACGTCTTTTCTATTATGTTCTTGGTAGGTAGACTTGTCAGCCTGGTGTCTATGTGGTATTTTGGAGCTAACTTAGAGGAGGAGGTCTTGCTTTTCCTCACATCCCTATTTGGCACGTATACATGGACTACTATGTTGTCATTGCGTACCGCTAAGGTTATTGCTAAGTGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAATTAAATTAGTTCTTTTGAGCTATTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGCGTCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTGCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCTAGAAATAGTTTTGAGGCCCTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >ML_10_nsp6_VIPR_ALG4_7769352_11109_11969_1_NA_NA_Unknown_Murine_coronavirus TCAAAGCGCACAAGAGTTATAAAAGGTACATGTTGCTGGATATTGGCTTCAACGTTTTTGTTCTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATCAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTGTTATGCACACTGTTTTACACCAACTATTTGGTTGTG---TACAAACAGAGTTTTAGAGGTCTAGCTTATGCTTGGCTTTCACACTTTGTCCCTGCTGTAGATTATACATATATGGATGAAGTTTTATATGGTGTTGTGTTGCTAGTAGCTATGGTGTTTGTTACCATGCGTAGCATAAACCACGACGTCTTTTCTATTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCCATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTACTATTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGTTGTCATTGGCTACCGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAATTAAATTAGTTCTTTTGAGCTACTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGAATCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTTGGCGTCTACAATTATAAAATCTCCGTTCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCTAGAAATAGTTTTGAGGCCCTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >ML_11_nsp6_VIPR_ALG4_7739594_10956_11816_1_NA_NA_Unknown_Murine_coronavirus TCAAAGCGCACAAGAGTTGTTAAAGGTACATGTTGCTGGATATTGGCTTCAACATTATTGTTTTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGTGTGACATTGTGTGCACTTTGCTTTGTGAGCTTTGCTATGCTGTTGGTTAAGCATAAGCATTTGTATTTAACTATGTTTATTATGCCGGTTTTGTGCACATTGTTTTACACGAACTATTTAGTTGTG---TATAAACAGAGTTTTAGAGGCCTAGCTTATGCATGGCTTTCACACTTTGTCCCTGCTGTAGATTATACATACATGGATGAAGTTTTATATGGTGTCGTGTTGCTAGTAGCTATGGTTTTTGTTACCATGCGCAGCATAAATCACGATGTCTTCTCTGTTATGTTCTTGGTTGGTAGACTTGTCAGCTTGGTGTCTATGTGGTACTTTGGGGCCAATTTAGAGGAGGAGGTGCTATTGTTCCTCACATCACTCTTTGGCACGTATACATGGACTACTATGCTGTCATTGGCTACTGCTAAGGTCATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAGTTAAATTAGTTCTTTTGAGCTATTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGCGTCTTGTCACTCCTTAATAGCATTTTTAGGATGCCGTTGGGTGTCTATAATTATAAAATCTCCGTGCAGGAGTTACGCTATATGAATGCTAATGGCTTGCGCCCGCCCAGAAATAGTTTTGAAGCCCTAGTGCTTAATTTTAAATTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >Parker_ORF1ab_YP_009924373_1_NA_NA_Rat_Murine_coronavirus TCAAAGCGCACAAGAGTTATTAAAGGCACATGTTGCTGGATATTGGCTTCAACATTTCTGTTTTGTAGCATTATCGCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGCGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATCAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTGTTATGCACATTGTTTTACACCAACTATTTGGTTGTG---TATAAACAGAGTTTTAGAGGCCTTGCTTATGCTTGGCTTTCACATTTTGTCCCTGCTGTAGATTATACATACATGGATGAAGTTTTATATGGTGTTGTGTTGCTAATCGCTATGGTGTTTGTCACCATGCGTAGCATAAATCACGACGTATTCTCTATTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCTATGTGGTATTTTGGTGCCAATTTAGAGGAAGAGGTACTATTGTTCCTCACATCCCTATTTGGCACGTATACATGGACTACCATGTTGTCATTGGCTACGGCCAAGGTCATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAATAAAATTAGTTCTTTTGAGCTATTTGTGTATAGGTTATGTGTGTTGTTGTTATTGGGGCGTCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTATAATTATAAAATCTCCGTGCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCCAAAAATAGTTTTGAAGCCCTGGTGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAGATTCAA >Penn_97_1_nsp6_VIPR_ALG4_7769341_10956_11816_1_NA_NA_Unknown_Murine_coronavirus TCAAAGCGCACAAGAGTTGTTAAAGGTACATGTTGCTGGATATTGGCTTCAACATTATTGTTTTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGTGTTACATTGTGTGCACTTTGCTTTGTGAGCTTTGCTATGCTGTTGGTTAAGCATAAGCATTTGTATTTAACTATGTTTATTATGCCGGTTTTGTGCACATTGTTTTACACGAACTATTTAGTTGTG---TATAAACAGAGTTTTAGAGGCCTAGCTTATGCATGGCTTTCACACTTTGTCCCTGCTGTAGATTATACATACATGGATGAAGTTTTATATGGTGTTGTGTTGCTAGTAGCTATGGTTTTTGTTACCATGCGCAGCATAAATCACGATGTCTTCTCTGTTATGTTCTTGGTTGGTAGACTTGTCAGCTTGGTGTCTATGTGGTACTTTGGGGCCAATTTAGAGGAGGAGGTGCTATTGTTCCTCACATCACTCTTTGGCACGTATACATGGACTACTATGCTGTCATTGGCTACTGCTAAGGTCATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAGTTAAATTAGTTCTTTTGAGCTATTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGCGTCTTGTCACTCCTTAATAGCATTTTTAGGATGCCGTTGGGTGTCTATAATTATAAAATCTCCGTGCAGGAGTTACGCTATATGAATGCTAATGGCTTGCGCCCGCCCAGAAATAGTTTTGAAGCCCTAGTGCTTAATTTTAAATTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >RJHM_A_nsp6_VIPR_ALG4_225403216_11085_11945_1_NA_USA_Mouse_Murine_coronavirus TCAAAGCGCACAAGAGTTATTAAAGGTACATGTTGCTGGATATTGGCTTCAACATTTTTGTTTTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACTCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATTAAGCATAAGCATTTGTATTTAACCATGTATATTATGCCTGTTTTATGCACATTGTTTTACACGAACTATTTGGTTGTG---TATAAACAGAGTTTTAGAGGCTTAGCATATGCTTGGCTTTCACACTTTGTCCCTGCCGTAGACTATACTTACATGGATGAAGTATTATATGGTGTCGTGTTGCTAGTCGCTATGGTATTTGTTACCATGCGCAGCATAAATCACGACGTCTTTTCTACTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCTATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTTCTGTTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGCTGTCATTGGCTACTGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTATTTCACAGACATACCGCAAATTAAATTAGTTCTCTTGAGCTATTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGCGTCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTGCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCCAGAAATAGTTTTGAAGCCTTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >RA59_SJHM_nsp6_VIPR_ALG4_225403223_11079_11939_1_NA_USA_Mouse_Murine_coronavirus TCAAAGCGCACAAGAGTTATAAAAGGTACATGTTGCTGGATATTGGCTTCAACGTTTTTGTTCTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATCAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTGTTATGCACACTGTTTTACACCAACTATTTGGTTGTG---TACAAACAGAGTTTTAGAGGTCTAGCTTATGCTTGGCTTTCACACTTTGTCCCTGCTGTAGATTATACATATATGGATGAAGTTTTATATGGTGTTGTGTTGCTAGTAGCTATGGTGTTTGTTACCATGCGTAGCATAAACCACGACGTCTTTTCTATTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCCATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTACTATTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGTTGTCATTGGCTACCGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAATTAAATTAGTTCTTTTGAGCTACTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGAATCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTTCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCTAGAAATAGTTTTGAGGCCCTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >RA59_R13_nsp6_VIPR_ALG4_225403197_11095_11955_1_2006_01_01_USA_Mouse_Murine_coronavirus TCAAAGCGCACAAGAGTTATAAAAGGTACATGTTGCTGGATATTGGCTTCAACGTTTTTGTTCTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATCAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTGTTATGCACACTGTTTTACACCAACTATTTGGTTGTG---TACAAACAGAGTTTTAGAGGTCTAGCTTATGCTTGGCTTTCACACTTTGTCCCTGCTGTAGATTATACATATATGGATGAAGTTTTATATGGTGTTGTGTTGCTAGTAGCTATGGTGTTTGTTACCATGCGTAGCATAAACCACGACGTCTTTTCTATTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCCATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTACTATTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGTTGTCATTGGCTACCGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAATTAAATTAGTTCTTTTGAGCTACTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGAATCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTTCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCTAGAAATAGTTTTGAGGCCCTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >S_nsp6_VIPR_ALG4_298199703_11122_11982_1_NA_USA_Mouse_Murine_coronavirus TCAAAGCGCACAAGAGTTATTAAAGGTACATTTTGCTGGATATTGGCCTCAACATTTTTGTTTTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATCAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTGTTATGTACATTGTTTTACACCAACTATTTGGTTGTG---TACAAACAGAGCTTTAGAGGTCTAGCGTATGCTTGGCTTTCACATTTTGTCCCTGCTGTAGATTATACATACATGGATGAAGTTTTATATGGTGTTGTGTTGCTATTTGCTATGGTGTTTGTCACCATGCGTAGCATAAATCACGACGTCTTTTCTATTATGTTCTTGGTAGGTAGACTTGTCAGCCTGGTGTCTATGTGGTATTTTGGAGCTAACTTAGAGGAGGAGGTCTTGCTTTTCCTCACATCCCTATTTGGCACGTATACATGGACTACTATGTTGTCATTGGCTACCGCTAAGGTTATTGCTAAGTGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAATTAAATTAGTTCTTTTGAGCTATTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGCGTCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTGCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCTAGAAATAGTTTTGAGGCCCTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >inf_MHV_A59_nsp6_VIPR_ALG4_225403278_11093_11953_1_NA_USA_Mouse_Murine_coronavirus TCAAAGCGCACAAGAGTTATAAAAGGTACATGTTGCTGGATATTGGCTTCAACGTTTTTGTTCTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATCAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTGTTATGCACACTGTTTTACACCAACTATTTGGTTGTG---TACAAACAGAGTTTTAGAGGTCTAGCTTATGCTTGGCTTTCACACTTTGTCCCTGCTGTAGATTATACATATATGGATGAAGTTTTATATGGTGTTGTGTTGCTAGTAGCTATGGTGTTTGTTACCATGCGTAGCATAAACCACGACGTCTTTTCTATTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCCATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTACTATTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGTTGTCATTGGCTACCGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAATTAAATTAGTTCTTTTGAGCTACTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGAATCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTTCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCTAGAAATAGTTTTGAGGCCCTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >UNKNOWN_AC_000192_nsp6_VIPR_ALG4_YP_209230_1_11132_11995_1_NA_NA_Unknown_Murine_coronavirus TCAAAGCGCACAAGAGTTATTAAAGGTACATGTTGCTGGATATTGGCTTCAACATTTTTGTTTTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACTCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAATCTTTGCTATGTTGTTGATTAAGCATAAGCATTTGTATTTAACCATGTATATTATGCCTGTTTTATGCACATTGTTTTACACGAACTATTTGGTTGTTGGGTATAAACAGAGTTTTAGAGGCTTAGCATATGCTTGGCTTTCATACTTTGTCCCTGCCGTAGACTATACTTACATGGATGAAGTATTATATGGTGTCGTGTTGCTAGTCGCTATGGTATTTGTTACCATGCGCAGCATAAATCACGACGTCTTTTCTACTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCTATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTTCTGTTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGCTGTCATTGGCTACTGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTATTTCACAGACATACCGCAAATTAAATTAGTTCTCTTGAGCTATTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGCGTCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTGCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCCAGAAATAGTTTTGAAGCCTTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >SA59_RJHM_nsp6_VIPR_ALG4_225403245_11085_11945_1_NA_USA_Mouse_Murine_coronavirus TCAAAGCGCACAAGAGTTATTAAAGGTACATGTTGCTGGATATTGGCTTCAACATTTTTGTTTTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACTCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATTAAGCATAAGCATTTGTATTTAACCATGTATATTATGCCTGTTTTATGCACATTGTTTTACACGAACTATTTGGTTGTG---TATAAACAGAGTTTTAGAGGCTTAGCATATGCTTGGCTTTCACACTTTGTCCCTGCCGTAGACTATACTTACATGGATGAAGTATTATATGGTGTCGTGTTGCTAGTCGCTATGGTATTTGTTACCATGCGCAGCATAAATCACGACGTCTTTTCTACTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCTATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTTCTGTTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGCTGTCATTGGCTACTGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTATTTCACAGACATACCGCAAATTAAATTAGTTCTCTTGAGCTATTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGCGTCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTGCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCCAGAAATAGTTTTGAAGCCTTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >repA59_RJHM_nsp6_VIPR_ALG4_225403233_11090_11950_1_NA_USA_Mouse_Murine_coronavirus TCAAAGCGCACAAGAGTTATAAAAGGTACATGTTGCTGGATATTGGCTTCAACGTTTTTGTTCTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACCCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATCAAGCATAAGCATTTGTATTTAACTATGTATATTATGCCTGTGTTATGCACACTGTTTTACACCAACTATTTGGTTGTG---TACAAACAGAGTTTTAGAGGTCTAGCTTATGCTTGGCTTTCACACTTTGTCCCTGCTGTAGATTATACATATATGGATGAAGTTTTATATGGTGTTGTGTTGCTAGTAGCTATGGTGTTTGTTACCATGCGTAGCATAAACCACGACGTCTTTTCTATTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCCATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTACTATTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGTTGTCATTGGCTACCGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTACTTCACAGACGTACCGCAAATTAAATTAGTTCTTTTGAGCTACTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGAATCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTTCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCTAGAAATAGTTTTGAGGCCCTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA >repJHM_RA59_nsp6_VIPR_ALG4_225403300_11068_11928_1_NA_USA_Mouse_Murine_coronavirus TCAAAGCGCACAAGAGTTATTAAAGGTACATGTTGCTGGATATTGGCTTCAACATTTTTGTTTTGTAGCATTATCTCAGCATTTGTAAAATGGACTATGTTTATGTATGTTACTACTCATATGTTGGGAGTGACATTGTGTGCACTTTGTTTTGTAAGCTTTGCTATGTTGTTGATTAAGCATAAGCATTTGTATTTAACCATGTATATTATGCCTGTTTTATGCACATTGTTTTACACGAACTATTTGGTTGTG---TATAAACAGAGTTTTAGAGGCTTAGCATATGCTTGGCTTTCACACTTTGTCCCTGCCGTAGACTATACTTACATGGATGAAGTATTATATGGTGTCGTGTTGCTAGTCGCTATGGTATTTGTTACCATGCGCAGCATAAATCACGACGTCTTTTCTACTATGTTCTTGGTTGGTAGACTTGTCAGCCTGGTATCTATGTGGTATTTTGGAGCCAATTTAGAGGAAGAGGTTCTGTTGTTCCTCACATCCCTATTTGGCACGTACACATGGACTACTATGCTGTCATTGGCTACTGCTAAGGTTATTGCTAAATGGTTGGCTGTGAATGTCTTGTATTTCACAGACATACCGCAAATTAAATTAGTTCTCTTGAGCTATTTGTGTATTGGTTATGTGTGTTGTTGTTATTGGGGCGTCTTGTCACTCCTTAATAGCATTTTTAGGATGCCATTGGGCGTCTACAATTATAAAATCTCCGTGCAGGAGTTACGTTATATGAATGCTAATGGCTTGCGCCCACCCAGAAATAGTTTTGAAGCCTTGATGCTTAATTTTAAGCTGTTGGGAATTGGTGGTGTGCCAGTCATTGAAGTATCTCAAATTCAA
>681_nsp6_VIPR_ALG4_381354058_11085_11945_1_NA_NA_Rat_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIIAAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ >A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >JHM_WU_Dns2_nsp6_VIPR_ALG4_397136010_11107_11967_1_1947_08_14_USA_Unknown_Murine_coronavirus SKRTRVIKGTCCWILASTFLVCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >MHV_1_nsp6_VIPR_ALG4_225403253_11063_11923_1_NA_USA_Mouse_Murine_coronavirus SKRTRVVKGTCCWILASTFLVCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLASLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >MHV_2_nsp6_VIPR_ALG4_6625760_10956_11816_1_NA_NA_Unknown_Murine_coronavirus SKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLVKHKHLYLTMFIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ >MHV_3_nsp6_VIPR_ALG4_225403263_11062_11922_1_NA_USA_Mouse_Murine_coronavirus SKRTRVVKGTCCWILASTFLVCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLGYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >MHV_A59_ORF1ab_YP_009915693_1_NA_NA_Unknown_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp6_VIPR_ALG4_530291001_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp6_VIPR_ALG4_530291025_11093_11953_1_2012_10_25_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >MHV_BHKR_lab_USA_icA59_L94P_2012_nsp6_VIPR_ALG4_530291013_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >MHV_BHKR_lab_USA_infA59_H126A_2012_nsp6_VIPR_ALG4_530290989_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >MHV_JHM_IA_nsp6_VIPR_ALG4_225403289_11107_11967_1_NA_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >MHV_MI_nsp6_VIPR_ALG4_293330423_11047_11907_1_1994_Australia_Mouse_Murine_coronavirus SSRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRFVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLGYLCIGYVCCCYWGVLSLLNSISRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >MHV_S_3239_17_nsp6_VIPR_ALG4_380706996_11122_11982_1_NA_NA_Unknown_Murine_coronavirus SKRTRVIKGTFCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLFAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLRTAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >ML_10_nsp6_VIPR_ALG4_7769352_11109_11969_1_NA_NA_Unknown_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPFGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >ML_11_nsp6_VIPR_ALG4_7739594_10956_11816_1_NA_NA_Unknown_Murine_coronavirus SKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLVKHKHLYLTMFIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ >Parker_ORF1ab_YP_009924373_1_NA_NA_Rat_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIIAAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLIAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALVLNFKLLGIGGVPVIEVSQIQ >Penn_97_1_nsp6_VIPR_ALG4_7769341_10956_11816_1_NA_NA_Unknown_Murine_coronavirus SKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLVKHKHLYLTMFIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQ >RJHM_A_nsp6_VIPR_ALG4_225403216_11085_11945_1_NA_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >RA59_SJHM_nsp6_VIPR_ALG4_225403223_11079_11939_1_NA_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >RA59_R13_nsp6_VIPR_ALG4_225403197_11095_11955_1_2006_01_01_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >S_nsp6_VIPR_ALG4_298199703_11122_11982_1_NA_USA_Mouse_Murine_coronavirus SKRTRVIKGTFCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLFAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >inf_MHV_A59_nsp6_VIPR_ALG4_225403278_11093_11953_1_NA_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >UNKNOWN_AC_000192_nsp6_VIPR_ALG4_YP_209230_1_11132_11995_1_NA_NA_Unknown_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVIFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVVGYKQSFRGLAYAWLSYFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >SA59_RJHM_nsp6_VIPR_ALG4_225403245_11085_11945_1_NA_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >repA59_RJHM_nsp6_VIPR_ALG4_225403233_11090_11950_1_NA_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ >repJHM_RA59_nsp6_VIPR_ALG4_225403300_11068_11928_1_NA_USA_Mouse_Murine_coronavirus SKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVV-YKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLVSMWYFGANLEEEVLLFLTSLFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQ
Reading sequence file /data//pss_subsets/A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/codeml/fasta/A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus.result.1
Found 27 sequences of length 864
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 4.2%
Found 108 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0% 99.5%100.0%
Using a window size of 80 with k as 10
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 88 polymorphic sites
**p-Value(s)**
----------
NSS: 1.39e-01 (1000 permutations)
Max Chi^2: 1.00e-03 (1000 permutations)
PHI (Permutation): 1.00e-03 (1000 permutations)
PHI (Normal): 1.33e-03
#NEXUS
[ID: 8451249573]
begin taxa;
dimensions ntax=27;
taxlabels
681_nsp6_VIPR_ALG4_381354058_11085_11945_1_NA_NA_Rat_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_L94P_2012_nsp6_VIPR_ALG4_530291013_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_infA59_H126A_2012_nsp6_VIPR_ALG4_530290989_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_JHM_IA_nsp6_VIPR_ALG4_225403289_11107_11967_1_NA_USA_Mouse_Murine_coronavirus
MHV_MI_nsp6_VIPR_ALG4_293330423_11047_11907_1_1994_Australia_Mouse_Murine_coronavirus
MHV_S_3239_17_nsp6_VIPR_ALG4_380706996_11122_11982_1_NA_NA_Unknown_Murine_coronavirus
ML_10_nsp6_VIPR_ALG4_7769352_11109_11969_1_NA_NA_Unknown_Murine_coronavirus
ML_11_nsp6_VIPR_ALG4_7739594_10956_11816_1_NA_NA_Unknown_Murine_coronavirus
Parker_ORF1ab_YP_009924373_1_NA_NA_Rat_Murine_coronavirus
Penn_97_1_nsp6_VIPR_ALG4_7769341_10956_11816_1_NA_NA_Unknown_Murine_coronavirus
RJHM_A_nsp6_VIPR_ALG4_225403216_11085_11945_1_NA_USA_Mouse_Murine_coronavirus
A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus
RA59_SJHM_nsp6_VIPR_ALG4_225403223_11079_11939_1_NA_USA_Mouse_Murine_coronavirus
RA59_R13_nsp6_VIPR_ALG4_225403197_11095_11955_1_2006_01_01_USA_Mouse_Murine_coronavirus
S_nsp6_VIPR_ALG4_298199703_11122_11982_1_NA_USA_Mouse_Murine_coronavirus
inf_MHV_A59_nsp6_VIPR_ALG4_225403278_11093_11953_1_NA_USA_Mouse_Murine_coronavirus
UNKNOWN_AC_000192_nsp6_VIPR_ALG4_YP_209230_1_11132_11995_1_NA_NA_Unknown_Murine_coronavirus
SA59_RJHM_nsp6_VIPR_ALG4_225403245_11085_11945_1_NA_USA_Mouse_Murine_coronavirus
repA59_RJHM_nsp6_VIPR_ALG4_225403233_11090_11950_1_NA_USA_Mouse_Murine_coronavirus
repJHM_RA59_nsp6_VIPR_ALG4_225403300_11068_11928_1_NA_USA_Mouse_Murine_coronavirus
JHM_WU_Dns2_nsp6_VIPR_ALG4_397136010_11107_11967_1_1947_08_14_USA_Unknown_Murine_coronavirus
MHV_1_nsp6_VIPR_ALG4_225403253_11063_11923_1_NA_USA_Mouse_Murine_coronavirus
MHV_2_nsp6_VIPR_ALG4_6625760_10956_11816_1_NA_NA_Unknown_Murine_coronavirus
MHV_3_nsp6_VIPR_ALG4_225403263_11062_11922_1_NA_USA_Mouse_Murine_coronavirus
MHV_A59_ORF1ab_YP_009915693_1_NA_NA_Unknown_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp6_VIPR_ALG4_530291001_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp6_VIPR_ALG4_530291025_11093_11953_1_2012_10_25_USA_Mouse_Murine_coronavirus
;
end;
begin trees;
translate
1 681_nsp6_VIPR_ALG4_381354058_11085_11945_1_NA_NA_Rat_Murine_coronavirus,
2 MHV_BHKR_lab_USA_icA59_L94P_2012_nsp6_VIPR_ALG4_530291013_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus,
3 MHV_BHKR_lab_USA_infA59_H126A_2012_nsp6_VIPR_ALG4_530290989_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus,
4 MHV_JHM_IA_nsp6_VIPR_ALG4_225403289_11107_11967_1_NA_USA_Mouse_Murine_coronavirus,
5 MHV_MI_nsp6_VIPR_ALG4_293330423_11047_11907_1_1994_Australia_Mouse_Murine_coronavirus,
6 MHV_S_3239_17_nsp6_VIPR_ALG4_380706996_11122_11982_1_NA_NA_Unknown_Murine_coronavirus,
7 ML_10_nsp6_VIPR_ALG4_7769352_11109_11969_1_NA_NA_Unknown_Murine_coronavirus,
8 ML_11_nsp6_VIPR_ALG4_7739594_10956_11816_1_NA_NA_Unknown_Murine_coronavirus,
9 Parker_ORF1ab_YP_009924373_1_NA_NA_Rat_Murine_coronavirus,
10 Penn_97_1_nsp6_VIPR_ALG4_7769341_10956_11816_1_NA_NA_Unknown_Murine_coronavirus,
11 RJHM_A_nsp6_VIPR_ALG4_225403216_11085_11945_1_NA_USA_Mouse_Murine_coronavirus,
12 A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus,
13 RA59_SJHM_nsp6_VIPR_ALG4_225403223_11079_11939_1_NA_USA_Mouse_Murine_coronavirus,
14 RA59_R13_nsp6_VIPR_ALG4_225403197_11095_11955_1_2006_01_01_USA_Mouse_Murine_coronavirus,
15 S_nsp6_VIPR_ALG4_298199703_11122_11982_1_NA_USA_Mouse_Murine_coronavirus,
16 inf_MHV_A59_nsp6_VIPR_ALG4_225403278_11093_11953_1_NA_USA_Mouse_Murine_coronavirus,
17 UNKNOWN_AC_000192_nsp6_VIPR_ALG4_YP_209230_1_11132_11995_1_NA_NA_Unknown_Murine_coronavirus,
18 SA59_RJHM_nsp6_VIPR_ALG4_225403245_11085_11945_1_NA_USA_Mouse_Murine_coronavirus,
19 repA59_RJHM_nsp6_VIPR_ALG4_225403233_11090_11950_1_NA_USA_Mouse_Murine_coronavirus,
20 repJHM_RA59_nsp6_VIPR_ALG4_225403300_11068_11928_1_NA_USA_Mouse_Murine_coronavirus,
21 JHM_WU_Dns2_nsp6_VIPR_ALG4_397136010_11107_11967_1_1947_08_14_USA_Unknown_Murine_coronavirus,
22 MHV_1_nsp6_VIPR_ALG4_225403253_11063_11923_1_NA_USA_Mouse_Murine_coronavirus,
23 MHV_2_nsp6_VIPR_ALG4_6625760_10956_11816_1_NA_NA_Unknown_Murine_coronavirus,
24 MHV_3_nsp6_VIPR_ALG4_225403263_11062_11922_1_NA_USA_Mouse_Murine_coronavirus,
25 MHV_A59_ORF1ab_YP_009915693_1_NA_NA_Unknown_Murine_coronavirus,
26 MHV_BHKR_lab_USA_icA59_17Cl1_2012_nsp6_VIPR_ALG4_530291001_11097_11957_1_2012_10_25_USA_Mouse_Murine_coronavirus,
27 MHV_BHKR_lab_USA_icA59_ns2M_2012_nsp6_VIPR_ALG4_530291025_11093_11953_1_2012_10_25_USA_Mouse_Murine_coronavirus
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:4.683185e-03,9:6.869188e-03,((2:9.343222e-04,3:9.402313e-04,7:2.320739e-03,12:9.380341e-04,13:9.455464e-04,14:9.375812e-04,16:9.324209e-04,19:9.683243e-04,25:9.499200e-04,26:1.030327e-03,27:9.697214e-04)1.000:2.549623e-02,((((4:9.174961e-04,11:9.602908e-04,17:5.142631e-03,18:9.806195e-04,20:9.207383e-04,21:2.279190e-03)1.000:3.130723e-02,5:4.693217e-02,(22:1.535365e-02,24:2.644997e-02)0.992:1.895038e-02)0.515:1.091349e-02,(8:9.191477e-04,10:3.424993e-03,23:9.288881e-04)1.000:7.296520e-02)0.804:1.212915e-02,(6:3.724729e-03,15:9.869645e-04)1.000:3.152019e-02)0.556:7.545271e-03)1.000:3.475640e-02);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:4.683185e-03,9:6.869188e-03,((2:9.343222e-04,3:9.402313e-04,7:2.320739e-03,12:9.380341e-04,13:9.455464e-04,14:9.375812e-04,16:9.324209e-04,19:9.683243e-04,25:9.499200e-04,26:1.030327e-03,27:9.697214e-04):2.549623e-02,((((4:9.174961e-04,11:9.602908e-04,17:5.142631e-03,18:9.806195e-04,20:9.207383e-04,21:2.279190e-03):3.130723e-02,5:4.693217e-02,(22:1.535365e-02,24:2.644997e-02):1.895038e-02):1.091349e-02,(8:9.191477e-04,10:3.424993e-03,23:9.288881e-04):7.296520e-02):1.212915e-02,(6:3.724729e-03,15:9.869645e-04):3.152019e-02):7.545271e-03):3.475640e-02);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -2254.20 -2284.39
2 -2254.44 -2283.29
--------------------------------------
TOTAL -2254.32 -2283.99
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.428245 0.003037 0.330522 0.546430 0.423754 1285.06 1343.30 1.000
r(A<->C){all} 0.070148 0.000640 0.022837 0.117575 0.067311 714.78 727.13 1.000
r(A<->G){all} 0.242251 0.001724 0.169512 0.330085 0.239678 692.48 697.98 1.000
r(A<->T){all} 0.042625 0.000197 0.016953 0.069873 0.041512 968.50 1005.40 1.000
r(C<->G){all} 0.048569 0.000409 0.012403 0.088058 0.046375 517.29 616.77 1.002
r(C<->T){all} 0.542965 0.002502 0.438468 0.636335 0.543434 658.99 666.38 1.000
r(G<->T){all} 0.053442 0.000220 0.027626 0.084168 0.051963 909.72 976.72 1.000
pi(A){all} 0.227564 0.000193 0.200206 0.254103 0.227729 968.50 986.16 1.000
pi(C){all} 0.163042 0.000137 0.140324 0.185937 0.163116 924.42 1117.97 1.000
pi(G){all} 0.227061 0.000201 0.200703 0.256843 0.226764 1072.65 1134.96 1.000
pi(T){all} 0.382333 0.000239 0.350956 0.411445 0.382505 692.76 924.00 1.000
alpha{1,2} 0.185869 0.002332 0.106164 0.282908 0.178591 1251.20 1270.72 1.004
alpha{3} 2.599369 1.418103 0.767666 4.987240 2.371193 1392.16 1414.86 1.000
pinvar{all} 0.584297 0.002784 0.481180 0.685157 0.587408 1195.20 1297.49 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/A59_NA_YP_009924336_1_NA_USA_Unknown_Murine_coronavirus.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 27 ls = 287
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 15 15 15 13 15 13 | Ser TCT 3 2 3 3 3 3 | Tyr TAT 15 13 15 13 14 14 | Cys TGT 7 8 8 8 7 8
TTC 4 4 3 5 4 5 | TCC 2 3 2 2 1 2 | TAC 4 6 4 6 4 5 | TGC 3 2 2 2 3 2
Leu TTA 6 6 7 5 7 6 | TCA 5 6 6 5 7 5 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 21 21 22 21 22 21 | TCG 0 0 0 1 0 1 | TAG 0 0 0 0 0 0 | Trp TGG 7 7 7 7 7 7
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 7 6 5 6 6 6 | Pro CCT 2 3 2 2 1 2 | His CAT 4 3 3 3 3 2 | Arg CGT 2 2 1 1 0 2
CTC 2 2 3 2 3 2 | CCC 1 0 1 1 1 1 | CAC 1 2 2 2 2 3 | CGC 2 2 3 3 4 2
CTA 3 4 2 3 4 3 | CCA 3 3 3 3 1 3 | Gln CAA 2 3 3 3 3 3 | CGA 0 0 0 0 0 0
CTG 4 4 4 6 2 5 | CCG 1 1 1 1 4 1 | CAG 3 2 2 2 2 2 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 9 10 11 11 8 10 | Thr ACT 3 5 8 6 6 5 | Asn AAT 8 8 9 7 9 8 | Ser AGT 2 2 2 2 2 1
ATC 3 4 2 2 2 2 | ACC 5 4 2 3 2 4 | AAC 2 2 1 3 1 2 | AGC 6 6 6 6 6 6
ATA 4 3 3 2 2 2 | ACA 9 8 8 7 9 7 | Lys AAA 6 6 6 6 7 5 | Arg AGA 4 4 4 4 4 4
Met ATG 14 15 15 15 14 15 | ACG 2 2 2 2 2 3 | AAG 5 5 5 5 4 6 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 7 10 10 9 13 10 | Ala GCT 11 11 9 11 10 10 | Asp GAT 2 2 1 1 3 2 | Gly GGT 6 7 6 6 8 6
GTC 9 6 9 11 9 13 | GCC 2 2 3 1 2 2 | GAC 2 2 3 3 1 2 | GGC 7 3 5 5 4 6
GTA 8 8 7 6 5 5 | GCA 3 2 3 4 3 3 | Glu GAA 4 3 4 2 3 4 | GGA 1 4 3 2 1 2
GTG 10 8 7 9 11 8 | GCG 0 0 0 0 0 0 | GAG 3 4 3 5 4 3 | GGG 0 0 0 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 15 15 15 15 15 16 | Ser TCT 2 2 2 2 2 3 | Tyr TAT 13 13 13 13 13 15 | Cys TGT 8 8 8 8 8 8
TTC 4 4 4 4 4 3 | TCC 3 3 3 3 3 2 | TAC 6 6 6 6 6 4 | TGC 2 2 2 2 2 2
Leu TTA 6 6 6 6 6 7 | TCA 6 6 6 6 6 6 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 21 21 21 21 21 22 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 7 7 7 7 7 7
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 6 6 6 6 6 5 | Pro CCT 3 3 3 3 3 2 | His CAT 3 3 3 3 3 3 | Arg CGT 2 2 2 2 2 1
CTC 2 2 2 2 2 3 | CCC 0 0 0 0 0 1 | CAC 2 2 2 2 2 2 | CGC 2 2 2 2 2 3
CTA 4 4 4 4 4 2 | CCA 3 3 3 3 3 3 | Gln CAA 3 3 3 3 3 3 | CGA 0 0 0 0 0 0
CTG 4 4 4 4 4 4 | CCG 1 1 1 1 1 1 | CAG 2 2 2 2 2 2 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 10 10 10 10 10 11 | Thr ACT 5 5 5 5 5 8 | Asn AAT 8 8 8 8 8 9 | Ser AGT 2 2 2 2 2 2
ATC 4 4 4 4 4 2 | ACC 4 4 4 4 4 2 | AAC 2 2 2 2 2 1 | AGC 6 6 6 6 6 6
ATA 3 3 3 3 3 3 | ACA 8 8 8 8 8 8 | Lys AAA 6 6 6 6 6 6 | Arg AGA 4 4 4 4 4 4
Met ATG 15 15 15 15 15 15 | ACG 2 2 2 2 2 2 | AAG 5 5 5 5 5 5 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 10 10 10 10 10 9 | Ala GCT 11 11 11 11 11 9 | Asp GAT 2 2 2 2 2 1 | Gly GGT 7 7 7 7 7 6
GTC 6 6 6 6 6 9 | GCC 2 2 2 2 2 3 | GAC 2 2 2 2 2 3 | GGC 3 3 3 3 3 5
GTA 8 8 8 8 8 7 | GCA 2 2 2 2 2 3 | Glu GAA 3 3 3 3 3 4 | GGA 4 4 4 4 4 3
GTG 8 8 8 8 8 7 | GCG 0 0 0 0 0 0 | GAG 4 4 4 4 4 3 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 16 18 16 15 15 15 | Ser TCT 4 3 2 3 3 3 | Tyr TAT 13 14 13 14 16 14 | Cys TGT 8 8 8 7 8 7
TTC 3 3 4 4 4 4 | TCC 3 2 3 1 2 1 | TAC 6 5 6 4 3 4 | TGC 2 1 2 3 2 3
Leu TTA 5 6 6 7 6 7 | TCA 4 6 6 7 5 7 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 22 22 20 22 21 22 | TCG 1 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 7 7 7 7 7 7
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 5 7 6 6 7 6 | Pro CCT 2 3 3 1 2 1 | His CAT 3 4 3 3 4 3 | Arg CGT 2 3 2 0 2 0
CTC 3 2 2 3 2 3 | CCC 1 0 0 1 1 1 | CAC 2 1 2 2 1 2 | CGC 2 2 2 4 2 4
CTA 6 3 4 4 3 4 | CCA 2 3 3 1 3 1 | Gln CAA 3 3 3 3 2 3 | CGA 0 0 0 0 0 0
CTG 1 3 4 2 4 2 | CCG 2 1 1 4 1 4 | CAG 2 2 2 2 3 2 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 13 11 10 8 9 8 | Thr ACT 7 5 5 6 4 6 | Asn AAT 7 8 8 9 9 9 | Ser AGT 2 1 2 2 2 2
ATC 1 3 4 2 4 2 | ACC 4 4 4 2 4 2 | AAC 3 2 2 1 1 1 | AGC 6 7 6 6 6 6
ATA 2 2 3 2 4 2 | ACA 7 9 8 9 9 9 | Lys AAA 6 5 6 7 7 7 | Arg AGA 3 4 4 4 3 4
Met ATG 15 15 15 14 14 14 | ACG 1 1 2 2 2 2 | AAG 4 6 5 4 5 4 | AGG 2 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 7 7 10 13 7 15 | Ala GCT 10 9 11 10 10 10 | Asp GAT 3 2 2 3 2 3 | Gly GGT 7 7 7 8 6 8
GTC 11 9 6 9 8 8 | GCC 2 2 2 2 3 2 | GAC 1 2 2 1 2 1 | GGC 6 4 3 4 7 4
GTA 6 6 8 5 8 5 | GCA 2 2 2 3 3 3 | Glu GAA 2 2 3 3 4 3 | GGA 2 3 4 1 1 1
GTG 9 10 8 11 10 10 | GCG 1 1 0 0 0 0 | GAG 5 5 4 4 3 4 | GGG 0 0 0 1 0 1
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 16 15 15 18 15 16 | Ser TCT 3 2 2 3 2 3 | Tyr TAT 15 13 13 14 13 15 | Cys TGT 8 8 8 8 8 8
TTC 3 4 4 3 4 3 | TCC 2 3 3 2 3 2 | TAC 4 6 6 5 6 5 | TGC 2 2 2 1 2 2
Leu TTA 7 6 6 6 6 7 | TCA 6 6 6 6 6 6 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 22 21 21 22 21 22 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 7 7 7 7 7 7
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 5 6 6 7 6 5 | Pro CCT 2 3 3 3 3 2 | His CAT 3 3 3 4 3 3 | Arg CGT 1 2 2 2 2 1
CTC 3 2 2 2 2 3 | CCC 1 0 0 0 0 1 | CAC 2 2 2 1 2 1 | CGC 3 2 2 2 2 3
CTA 2 4 4 3 4 2 | CCA 3 3 3 3 3 3 | Gln CAA 3 3 3 3 3 3 | CGA 0 0 0 0 0 0
CTG 4 4 4 3 4 4 | CCG 1 1 1 1 1 1 | CAG 2 2 2 2 2 2 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 11 10 10 11 10 11 | Thr ACT 8 5 5 5 5 8 | Asn AAT 9 8 8 8 8 9 | Ser AGT 2 2 2 1 2 2
ATC 2 4 4 3 4 3 | ACC 2 4 4 4 4 2 | AAC 1 2 2 2 2 1 | AGC 6 6 6 7 6 5
ATA 3 3 3 2 3 3 | ACA 8 8 8 9 8 8 | Lys AAA 6 6 6 5 6 6 | Arg AGA 4 4 4 4 4 4
Met ATG 15 15 15 15 15 15 | ACG 2 2 2 1 2 2 | AAG 5 5 5 6 5 5 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 9 10 10 7 10 10 | Ala GCT 9 11 11 10 11 9 | Asp GAT 1 2 2 2 2 1 | Gly GGT 6 7 7 7 7 6
GTC 9 6 6 9 6 9 | GCC 3 2 2 2 2 3 | GAC 3 2 2 2 2 3 | GGC 5 3 3 4 3 5
GTA 7 8 8 6 8 7 | GCA 3 2 2 2 2 3 | Glu GAA 4 3 3 2 3 4 | GGA 3 4 4 3 4 3
GTG 7 8 8 10 8 6 | GCG 0 0 0 1 0 0 | GAG 3 4 4 5 4 3 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------
Phe TTT 16 15 16 | Ser TCT 3 2 3 | Tyr TAT 15 13 15 | Cys TGT 8 8 8
TTC 3 4 3 | TCC 2 3 2 | TAC 4 6 4 | TGC 2 2 2
Leu TTA 7 6 7 | TCA 6 6 6 | *** TAA 0 0 0 | *** TGA 0 0 0
TTG 22 21 22 | TCG 0 0 0 | TAG 0 0 0 | Trp TGG 7 7 7
--------------------------------------------------------------------------------------
Leu CTT 5 6 5 | Pro CCT 2 3 2 | His CAT 3 3 3 | Arg CGT 1 2 1
CTC 3 2 3 | CCC 1 0 1 | CAC 2 2 2 | CGC 3 2 3
CTA 2 4 2 | CCA 3 3 3 | Gln CAA 3 3 3 | CGA 0 0 0
CTG 4 4 4 | CCG 1 1 1 | CAG 2 2 2 | CGG 0 0 0
--------------------------------------------------------------------------------------
Ile ATT 11 10 11 | Thr ACT 8 5 8 | Asn AAT 9 8 9 | Ser AGT 2 2 2
ATC 2 4 2 | ACC 2 4 2 | AAC 1 2 1 | AGC 6 6 6
ATA 3 3 3 | ACA 8 8 8 | Lys AAA 6 6 6 | Arg AGA 4 4 4
Met ATG 15 15 15 | ACG 2 2 2 | AAG 5 5 5 | AGG 1 1 1
--------------------------------------------------------------------------------------
Val GTT 9 10 9 | Ala GCT 9 11 9 | Asp GAT 1 2 1 | Gly GGT 6 7 6
GTC 9 6 9 | GCC 3 2 3 | GAC 3 2 3 | GGC 5 3 5
GTA 7 8 7 | GCA 3 2 3 | Glu GAA 4 3 4 | GGA 3 4 3
GTG 7 8 7 | GCG 0 0 0 | GAG 3 4 3 | GGG 0 0 0
--------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C1
position 1: T:0.32056 C:0.12892 A:0.28920 G:0.26132
position 2: T:0.43902 C:0.18118 A:0.21254 G:0.16725
position 3: T:0.35889 C:0.19164 A:0.20209 G:0.24739
Average T:0.37282 C:0.16725 A:0.23461 G:0.22532
#2: C2
position 1: T:0.32404 C:0.12892 A:0.29617 G:0.25087
position 2: T:0.43902 C:0.18118 A:0.21254 G:0.16725
position 3: T:0.37282 C:0.17422 A:0.20906 G:0.24390
Average T:0.37863 C:0.16144 A:0.23926 G:0.22067
#3: C3
position 1: T:0.32753 C:0.12195 A:0.29617 G:0.25436
position 2: T:0.43554 C:0.18467 A:0.21254 G:0.16725
position 3: T:0.37631 C:0.17770 A:0.20557 G:0.24042
Average T:0.37979 C:0.16144 A:0.23810 G:0.22067
#4: C4
position 1: T:0.31707 C:0.13240 A:0.28571 G:0.26481
position 2: T:0.43902 C:0.18118 A:0.21254 G:0.16725
position 3: T:0.35540 C:0.19861 A:0.18118 G:0.26481
Average T:0.37050 C:0.17073 A:0.22648 G:0.23229
#5: C5
position 1: T:0.32753 C:0.12544 A:0.27526 G:0.27178
position 2: T:0.44251 C:0.18118 A:0.20906 G:0.16725
position 3: T:0.37631 C:0.17073 A:0.19512 G:0.25784
Average T:0.38211 C:0.15912 A:0.22648 G:0.23229
#6: C6
position 1: T:0.32056 C:0.12892 A:0.28223 G:0.26829
position 2: T:0.43902 C:0.18118 A:0.21254 G:0.16725
position 3: T:0.35540 C:0.20557 A:0.18118 G:0.25784
Average T:0.37166 C:0.17189 A:0.22532 G:0.23113
#7: C7
position 1: T:0.32404 C:0.12892 A:0.29617 G:0.25087
position 2: T:0.43902 C:0.18118 A:0.21254 G:0.16725
position 3: T:0.37282 C:0.17422 A:0.20906 G:0.24390
Average T:0.37863 C:0.16144 A:0.23926 G:0.22067
#8: C8
position 1: T:0.32404 C:0.12892 A:0.29617 G:0.25087
position 2: T:0.43902 C:0.18118 A:0.21254 G:0.16725
position 3: T:0.37282 C:0.17422 A:0.20906 G:0.24390
Average T:0.37863 C:0.16144 A:0.23926 G:0.22067
#9: C9
position 1: T:0.32404 C:0.12892 A:0.29617 G:0.25087
position 2: T:0.43902 C:0.18118 A:0.21254 G:0.16725
position 3: T:0.37282 C:0.17422 A:0.20906 G:0.24390
Average T:0.37863 C:0.16144 A:0.23926 G:0.22067
#10: C10
position 1: T:0.32404 C:0.12892 A:0.29617 G:0.25087
position 2: T:0.43902 C:0.18118 A:0.21254 G:0.16725
position 3: T:0.37282 C:0.17422 A:0.20906 G:0.24390
Average T:0.37863 C:0.16144 A:0.23926 G:0.22067
#11: C11
position 1: T:0.32404 C:0.12892 A:0.29617 G:0.25087
position 2: T:0.43902 C:0.18118 A:0.21254 G:0.16725
position 3: T:0.37282 C:0.17422 A:0.20906 G:0.24390
Average T:0.37863 C:0.16144 A:0.23926 G:0.22067
#12: C12
position 1: T:0.33101 C:0.12195 A:0.29617 G:0.25087
position 2: T:0.43554 C:0.18467 A:0.21254 G:0.16725
position 3: T:0.37631 C:0.17770 A:0.20557 G:0.24042
Average T:0.38095 C:0.16144 A:0.23810 G:0.21951
#13: C13
position 1: T:0.32753 C:0.12544 A:0.28920 G:0.25784
position 2: T:0.43554 C:0.18467 A:0.20906 G:0.17073
position 3: T:0.37979 C:0.19512 A:0.17422 G:0.25087
Average T:0.38095 C:0.16841 A:0.22416 G:0.22648
#14: C14
position 1: T:0.33101 C:0.12892 A:0.29268 G:0.24739
position 2: T:0.44251 C:0.17770 A:0.21254 G:0.16725
position 3: T:0.38328 C:0.17073 A:0.18815 G:0.25784
Average T:0.38560 C:0.15912 A:0.23113 G:0.22416
#15: C15
position 1: T:0.32404 C:0.12892 A:0.29617 G:0.25087
position 2: T:0.43902 C:0.18118 A:0.21254 G:0.16725
position 3: T:0.37631 C:0.17422 A:0.20906 G:0.24042
Average T:0.37979 C:0.16144 A:0.23926 G:0.21951
#16: C16
position 1: T:0.32753 C:0.12544 A:0.27526 G:0.27178
position 2: T:0.44251 C:0.18118 A:0.20906 G:0.16725
position 3: T:0.37631 C:0.17073 A:0.19512 G:0.25784
Average T:0.38211 C:0.15912 A:0.22648 G:0.23229
#17: C17
position 1: T:0.32056 C:0.12892 A:0.29268 G:0.25784
position 2: T:0.43902 C:0.18118 A:0.21603 G:0.16376
position 3: T:0.36934 C:0.18118 A:0.20209 G:0.24739
Average T:0.37631 C:0.16376 A:0.23693 G:0.22300
#18: C18
position 1: T:0.32753 C:0.12544 A:0.27526 G:0.27178
position 2: T:0.44251 C:0.18118 A:0.20906 G:0.16725
position 3: T:0.38328 C:0.16725 A:0.19512 G:0.25436
Average T:0.38444 C:0.15796 A:0.22648 G:0.23113
#19: C19
position 1: T:0.33101 C:0.12195 A:0.29617 G:0.25087
position 2: T:0.43554 C:0.18467 A:0.21254 G:0.16725
position 3: T:0.37631 C:0.17770 A:0.20557 G:0.24042
Average T:0.38095 C:0.16144 A:0.23810 G:0.21951
#20: C20
position 1: T:0.32404 C:0.12892 A:0.29617 G:0.25087
position 2: T:0.43902 C:0.18118 A:0.21254 G:0.16725
position 3: T:0.37282 C:0.17422 A:0.20906 G:0.24390
Average T:0.37863 C:0.16144 A:0.23926 G:0.22067
#21: C21
position 1: T:0.32404 C:0.12892 A:0.29617 G:0.25087
position 2: T:0.43902 C:0.18118 A:0.21254 G:0.16725
position 3: T:0.37282 C:0.17422 A:0.20906 G:0.24390
Average T:0.37863 C:0.16144 A:0.23926 G:0.22067
#22: C22
position 1: T:0.33101 C:0.12544 A:0.29268 G:0.25087
position 2: T:0.44251 C:0.18118 A:0.21254 G:0.16376
position 3: T:0.38328 C:0.17073 A:0.18815 G:0.25784
Average T:0.38560 C:0.15912 A:0.23113 G:0.22416
#23: C23
position 1: T:0.32404 C:0.12892 A:0.29617 G:0.25087
position 2: T:0.43902 C:0.18118 A:0.21254 G:0.16725
position 3: T:0.37282 C:0.17422 A:0.20906 G:0.24390
Average T:0.37863 C:0.16144 A:0.23926 G:0.22067
#24: C24
position 1: T:0.33449 C:0.11847 A:0.29617 G:0.25087
position 2: T:0.43902 C:0.18467 A:0.21254 G:0.16376
position 3: T:0.37979 C:0.17770 A:0.20557 G:0.23693
Average T:0.38444 C:0.16028 A:0.23810 G:0.21719
#25: C25
position 1: T:0.33101 C:0.12195 A:0.29617 G:0.25087
position 2: T:0.43554 C:0.18467 A:0.21254 G:0.16725
position 3: T:0.37631 C:0.17770 A:0.20557 G:0.24042
Average T:0.38095 C:0.16144 A:0.23810 G:0.21951
#26: C26
position 1: T:0.32404 C:0.12892 A:0.29617 G:0.25087
position 2: T:0.43902 C:0.18118 A:0.21254 G:0.16725
position 3: T:0.37282 C:0.17422 A:0.20906 G:0.24390
Average T:0.37863 C:0.16144 A:0.23926 G:0.22067
#27: C27
position 1: T:0.33101 C:0.12195 A:0.29617 G:0.25087
position 2: T:0.43554 C:0.18467 A:0.21254 G:0.16725
position 3: T:0.37631 C:0.17770 A:0.20557 G:0.24042
Average T:0.38095 C:0.16144 A:0.23810 G:0.21951
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 414 | Ser S TCT 71 | Tyr Y TAT 374 | Cys C TGT 212
TTC 101 | TCC 63 | TAC 137 | TGC 56
Leu L TTA 169 | TCA 159 | *** * TAA 0 | *** * TGA 0
TTG 578 | TCG 3 | TAG 0 | Trp W TGG 189
------------------------------------------------------------------------------
Leu L CTT 159 | Pro P CCT 64 | His H CAT 84 | Arg R CGT 42
CTC 64 | CCC 14 | CAC 50 | CGC 67
CTA 92 | CCA 74 | Gln Q CAA 79 | CGA 0
CTG 100 | CCG 37 | CAG 56 | CGG 0
------------------------------------------------------------------------------
Ile I ATT 274 | Thr T ACT 156 | Asn N AAT 224 | Ser S AGT 51
ATC 81 | ACC 90 | AAC 46 | AGC 163
ATA 75 | ACA 220 | Lys K AAA 163 | Arg R AGA 106
Met M ATG 400 | ACG 52 | AAG 134 | AGG 28
------------------------------------------------------------------------------
Val V GTT 261 | Ala A GCT 276 | Asp D GAT 51 | Gly G GGT 182
GTC 216 | GCC 60 | GAC 57 | GGC 114
GTA 190 | GCA 68 | Glu E GAA 86 | GGA 79
GTG 227 | GCG 3 | GAG 103 | GGG 5
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.32598 C:0.12673 A:0.29204 G:0.25526
position 2: T:0.43890 C:0.18196 A:0.21216 G:0.16699
position 3: T:0.37360 C:0.17796 A:0.20132 G:0.24713
Average T:0.37949 C:0.16221 A:0.23517 G:0.22313
Model 1: NearlyNeutral (2 categories)
TREE # 1: (1, 17, ((10, 11, 15, 2, 20, 21, 23, 26, 7, 8, 9), ((((12, 19, 24, 25, 27, 3), 13, (4, 6)), (16, 18, 5)), (14, 22)))); MP score: 206
check convergence..
lnL(ntime: 36 np: 39): -2166.869861 +0.000000
28..1 28..17 28..29 29..30 30..10 30..11 30..15 30..2 30..20 30..21 30..23 30..26 30..7 30..8 30..9 29..31 31..32 32..33 33..34 34..12 34..19 34..24 34..25 34..27 34..3 33..13 33..35 35..4 35..6 32..36 36..16 36..18 36..5 31..37 37..14 37..22
0.012907 0.012610 0.080110 0.060200 0.000004 0.000004 0.003638 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.008762 0.028876 0.016126 0.075815 0.000004 0.000004 0.010955 0.000004 0.000004 0.003646 0.122098 0.049406 0.041519 0.061184 0.157859 0.000004 0.007284 0.000004 0.076770 0.007266 0.000004 3.426235 0.946404 0.023746
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.837100
(1: 0.012907, 17: 0.012610, ((10: 0.000004, 11: 0.000004, 15: 0.003638, 2: 0.000004, 20: 0.000004, 21: 0.000004, 23: 0.000004, 26: 0.000004, 7: 0.000004, 8: 0.000004, 9: 0.000004): 0.060200, ((((12: 0.000004, 19: 0.000004, 24: 0.010955, 25: 0.000004, 27: 0.000004, 3: 0.003646): 0.075815, 13: 0.122098, (4: 0.041519, 6: 0.061184): 0.049406): 0.016126, (16: 0.000004, 18: 0.007284, 5: 0.000004): 0.157859): 0.028876, (14: 0.007266, 22: 0.000004): 0.076770): 0.008762): 0.080110);
(C1: 0.012907, C17: 0.012610, ((C10: 0.000004, C11: 0.000004, C15: 0.003638, C2: 0.000004, C20: 0.000004, C21: 0.000004, C23: 0.000004, C26: 0.000004, C7: 0.000004, C8: 0.000004, C9: 0.000004): 0.060200, ((((C12: 0.000004, C19: 0.000004, C24: 0.010955, C25: 0.000004, C27: 0.000004, C3: 0.003646): 0.075815, C13: 0.122098, (C4: 0.041519, C6: 0.061184): 0.049406): 0.016126, (C16: 0.000004, C18: 0.007284, C5: 0.000004): 0.157859): 0.028876, (C14: 0.007266, C22: 0.000004): 0.076770): 0.008762): 0.080110);
Detailed output identifying parameters
kappa (ts/tv) = 3.42623
MLEs of dN/dS (w) for site classes (K=2)
p: 0.94640 0.05360
w: 0.02375 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
28..1 0.013 624.1 236.9 0.0761 0.0010 0.0130 0.6 3.1
28..17 0.013 624.1 236.9 0.0761 0.0010 0.0127 0.6 3.0
28..29 0.080 624.1 236.9 0.0761 0.0061 0.0808 3.8 19.2
29..30 0.060 624.1 236.9 0.0761 0.0046 0.0607 2.9 14.4
30..10 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..11 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..15 0.004 624.1 236.9 0.0761 0.0003 0.0037 0.2 0.9
30..2 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..20 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..21 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..23 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..26 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..7 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..8 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..9 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
29..31 0.009 624.1 236.9 0.0761 0.0007 0.0088 0.4 2.1
31..32 0.029 624.1 236.9 0.0761 0.0022 0.0291 1.4 6.9
32..33 0.016 624.1 236.9 0.0761 0.0012 0.0163 0.8 3.9
33..34 0.076 624.1 236.9 0.0761 0.0058 0.0765 3.6 18.1
34..12 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
34..19 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
34..24 0.011 624.1 236.9 0.0761 0.0008 0.0111 0.5 2.6
34..25 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
34..27 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
34..3 0.004 624.1 236.9 0.0761 0.0003 0.0037 0.2 0.9
33..13 0.122 624.1 236.9 0.0761 0.0094 0.1232 5.8 29.2
33..35 0.049 624.1 236.9 0.0761 0.0038 0.0499 2.4 11.8
35..4 0.042 624.1 236.9 0.0761 0.0032 0.0419 2.0 9.9
35..6 0.061 624.1 236.9 0.0761 0.0047 0.0617 2.9 14.6
32..36 0.158 624.1 236.9 0.0761 0.0121 0.1593 7.6 37.7
36..16 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
36..18 0.007 624.1 236.9 0.0761 0.0006 0.0074 0.3 1.7
36..5 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
31..37 0.077 624.1 236.9 0.0761 0.0059 0.0775 3.7 18.4
37..14 0.007 624.1 236.9 0.0761 0.0006 0.0073 0.3 1.7
37..22 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
Time used: 1:54
Model 2: PositiveSelection (3 categories)
TREE # 1: (1, 17, ((10, 11, 15, 2, 20, 21, 23, 26, 7, 8, 9), ((((12, 19, 24, 25, 27, 3), 13, (4, 6)), (16, 18, 5)), (14, 22)))); MP score: 206
check convergence..
lnL(ntime: 36 np: 41): -2166.869862 +0.000000
28..1 28..17 28..29 29..30 30..10 30..11 30..15 30..2 30..20 30..21 30..23 30..26 30..7 30..8 30..9 29..31 31..32 32..33 33..34 34..12 34..19 34..24 34..25 34..27 34..3 33..13 33..35 35..4 35..6 32..36 36..16 36..18 36..5 31..37 37..14 37..22
0.012907 0.012610 0.080110 0.060197 0.000004 0.000004 0.003638 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.008762 0.028879 0.016126 0.075814 0.000004 0.000004 0.010955 0.000004 0.000004 0.003646 0.122103 0.049408 0.041521 0.061183 0.157857 0.000004 0.007285 0.000004 0.076769 0.007266 0.000004 3.426247 0.946406 0.053594 0.023746 10.063703
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.837104
(1: 0.012907, 17: 0.012610, ((10: 0.000004, 11: 0.000004, 15: 0.003638, 2: 0.000004, 20: 0.000004, 21: 0.000004, 23: 0.000004, 26: 0.000004, 7: 0.000004, 8: 0.000004, 9: 0.000004): 0.060197, ((((12: 0.000004, 19: 0.000004, 24: 0.010955, 25: 0.000004, 27: 0.000004, 3: 0.003646): 0.075814, 13: 0.122103, (4: 0.041521, 6: 0.061183): 0.049408): 0.016126, (16: 0.000004, 18: 0.007285, 5: 0.000004): 0.157857): 0.028879, (14: 0.007266, 22: 0.000004): 0.076769): 0.008762): 0.080110);
(C1: 0.012907, C17: 0.012610, ((C10: 0.000004, C11: 0.000004, C15: 0.003638, C2: 0.000004, C20: 0.000004, C21: 0.000004, C23: 0.000004, C26: 0.000004, C7: 0.000004, C8: 0.000004, C9: 0.000004): 0.060197, ((((C12: 0.000004, C19: 0.000004, C24: 0.010955, C25: 0.000004, C27: 0.000004, C3: 0.003646): 0.075814, C13: 0.122103, (C4: 0.041521, C6: 0.061183): 0.049408): 0.016126, (C16: 0.000004, C18: 0.007285, C5: 0.000004): 0.157857): 0.028879, (C14: 0.007266, C22: 0.000004): 0.076769): 0.008762): 0.080110);
Detailed output identifying parameters
kappa (ts/tv) = 3.42625
MLEs of dN/dS (w) for site classes (K=3)
p: 0.94641 0.05359 0.00000
w: 0.02375 1.00000 10.06370
(note that p[2] is zero)
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
28..1 0.013 624.1 236.9 0.0761 0.0010 0.0130 0.6 3.1
28..17 0.013 624.1 236.9 0.0761 0.0010 0.0127 0.6 3.0
28..29 0.080 624.1 236.9 0.0761 0.0061 0.0808 3.8 19.2
29..30 0.060 624.1 236.9 0.0761 0.0046 0.0607 2.9 14.4
30..10 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..11 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..15 0.004 624.1 236.9 0.0761 0.0003 0.0037 0.2 0.9
30..2 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..20 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..21 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..23 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..26 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..7 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..8 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
30..9 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
29..31 0.009 624.1 236.9 0.0761 0.0007 0.0088 0.4 2.1
31..32 0.029 624.1 236.9 0.0761 0.0022 0.0291 1.4 6.9
32..33 0.016 624.1 236.9 0.0761 0.0012 0.0163 0.8 3.9
33..34 0.076 624.1 236.9 0.0761 0.0058 0.0765 3.6 18.1
34..12 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
34..19 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
34..24 0.011 624.1 236.9 0.0761 0.0008 0.0111 0.5 2.6
34..25 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
34..27 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
34..3 0.004 624.1 236.9 0.0761 0.0003 0.0037 0.2 0.9
33..13 0.122 624.1 236.9 0.0761 0.0094 0.1232 5.8 29.2
33..35 0.049 624.1 236.9 0.0761 0.0038 0.0499 2.4 11.8
35..4 0.042 624.1 236.9 0.0761 0.0032 0.0419 2.0 9.9
35..6 0.061 624.1 236.9 0.0761 0.0047 0.0617 2.9 14.6
32..36 0.158 624.1 236.9 0.0761 0.0121 0.1593 7.6 37.7
36..16 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
36..18 0.007 624.1 236.9 0.0761 0.0006 0.0074 0.3 1.7
36..5 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
31..37 0.077 624.1 236.9 0.0761 0.0059 0.0775 3.7 18.4
37..14 0.007 624.1 236.9 0.0761 0.0006 0.0073 0.3 1.7
37..22 0.000 624.1 236.9 0.0761 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
210 S 0.522 1.232 +- 0.524
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.925 0.049 0.010 0.004 0.003 0.002 0.002 0.002 0.002 0.002
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000
sum of density on p0-p1 = 1.000000
Time used: 5:36
Model 7: beta (10 categories)
TREE # 1: (1, 17, ((10, 11, 15, 2, 20, 21, 23, 26, 7, 8, 9), ((((12, 19, 24, 25, 27, 3), 13, (4, 6)), (16, 18, 5)), (14, 22)))); MP score: 206
check convergence..
lnL(ntime: 36 np: 39): -2163.727808 +0.000000
28..1 28..17 28..29 29..30 30..10 30..11 30..15 30..2 30..20 30..21 30..23 30..26 30..7 30..8 30..9 29..31 31..32 32..33 33..34 34..12 34..19 34..24 34..25 34..27 34..3 33..13 33..35 35..4 35..6 32..36 36..16 36..18 36..5 31..37 37..14 37..22
0.012681 0.012870 0.080409 0.060286 0.000004 0.000004 0.003638 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.008708 0.028871 0.016047 0.076191 0.000004 0.000004 0.010975 0.000004 0.000004 0.003645 0.122176 0.049679 0.041399 0.061463 0.158867 0.000004 0.007287 0.000004 0.076984 0.007287 0.000004 3.304654 0.082195 1.176294
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.839533
(1: 0.012681, 17: 0.012870, ((10: 0.000004, 11: 0.000004, 15: 0.003638, 2: 0.000004, 20: 0.000004, 21: 0.000004, 23: 0.000004, 26: 0.000004, 7: 0.000004, 8: 0.000004, 9: 0.000004): 0.060286, ((((12: 0.000004, 19: 0.000004, 24: 0.010975, 25: 0.000004, 27: 0.000004, 3: 0.003645): 0.076191, 13: 0.122176, (4: 0.041399, 6: 0.061463): 0.049679): 0.016047, (16: 0.000004, 18: 0.007287, 5: 0.000004): 0.158867): 0.028871, (14: 0.007287, 22: 0.000004): 0.076984): 0.008708): 0.080409);
(C1: 0.012681, C17: 0.012870, ((C10: 0.000004, C11: 0.000004, C15: 0.003638, C2: 0.000004, C20: 0.000004, C21: 0.000004, C23: 0.000004, C26: 0.000004, C7: 0.000004, C8: 0.000004, C9: 0.000004): 0.060286, ((((C12: 0.000004, C19: 0.000004, C24: 0.010975, C25: 0.000004, C27: 0.000004, C3: 0.003645): 0.076191, C13: 0.122176, (C4: 0.041399, C6: 0.061463): 0.049679): 0.016047, (C16: 0.000004, C18: 0.007287, C5: 0.000004): 0.158867): 0.028871, (C14: 0.007287, C22: 0.000004): 0.076984): 0.008708): 0.080409);
Detailed output identifying parameters
kappa (ts/tv) = 3.30465
Parameters in M7 (beta):
p = 0.08220 q = 1.17629
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00000 0.00000 0.00000 0.00000 0.00005 0.00054 0.00415 0.02374 0.11043 0.45616
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
28..1 0.013 625.4 235.6 0.0595 0.0008 0.0133 0.5 3.1
28..17 0.013 625.4 235.6 0.0595 0.0008 0.0135 0.5 3.2
28..29 0.080 625.4 235.6 0.0595 0.0050 0.0846 3.1 19.9
29..30 0.060 625.4 235.6 0.0595 0.0038 0.0634 2.4 14.9
30..10 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..11 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..15 0.004 625.4 235.6 0.0595 0.0002 0.0038 0.1 0.9
30..2 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..20 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..21 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..23 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..26 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..7 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..8 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..9 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
29..31 0.009 625.4 235.6 0.0595 0.0005 0.0092 0.3 2.2
31..32 0.029 625.4 235.6 0.0595 0.0018 0.0304 1.1 7.2
32..33 0.016 625.4 235.6 0.0595 0.0010 0.0169 0.6 4.0
33..34 0.076 625.4 235.6 0.0595 0.0048 0.0801 3.0 18.9
34..12 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
34..19 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
34..24 0.011 625.4 235.6 0.0595 0.0007 0.0115 0.4 2.7
34..25 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
34..27 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
34..3 0.004 625.4 235.6 0.0595 0.0002 0.0038 0.1 0.9
33..13 0.122 625.4 235.6 0.0595 0.0076 0.1285 4.8 30.3
33..35 0.050 625.4 235.6 0.0595 0.0031 0.0523 1.9 12.3
35..4 0.041 625.4 235.6 0.0595 0.0026 0.0435 1.6 10.3
35..6 0.061 625.4 235.6 0.0595 0.0038 0.0647 2.4 15.2
32..36 0.159 625.4 235.6 0.0595 0.0099 0.1671 6.2 39.4
36..16 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
36..18 0.007 625.4 235.6 0.0595 0.0005 0.0077 0.3 1.8
36..5 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
31..37 0.077 625.4 235.6 0.0595 0.0048 0.0810 3.0 19.1
37..14 0.007 625.4 235.6 0.0595 0.0005 0.0077 0.3 1.8
37..22 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
Time used: 14:37
Model 8: beta&w>1 (11 categories)
TREE # 1: (1, 17, ((10, 11, 15, 2, 20, 21, 23, 26, 7, 8, 9), ((((12, 19, 24, 25, 27, 3), 13, (4, 6)), (16, 18, 5)), (14, 22)))); MP score: 206
lnL(ntime: 36 np: 41): -2163.728090 +0.000000
28..1 28..17 28..29 29..30 30..10 30..11 30..15 30..2 30..20 30..21 30..23 30..26 30..7 30..8 30..9 29..31 31..32 32..33 33..34 34..12 34..19 34..24 34..25 34..27 34..3 33..13 33..35 35..4 35..6 32..36 36..16 36..18 36..5 31..37 37..14 37..22
0.012681 0.012870 0.080409 0.060286 0.000004 0.000004 0.003638 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.008709 0.028871 0.016047 0.076191 0.000004 0.000004 0.010975 0.000004 0.000004 0.003645 0.122177 0.049680 0.041399 0.061463 0.158867 0.000004 0.007287 0.000004 0.076985 0.007287 0.000004 3.304679 0.999990 0.082192 1.176334 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.839535
(1: 0.012681, 17: 0.012870, ((10: 0.000004, 11: 0.000004, 15: 0.003638, 2: 0.000004, 20: 0.000004, 21: 0.000004, 23: 0.000004, 26: 0.000004, 7: 0.000004, 8: 0.000004, 9: 0.000004): 0.060286, ((((12: 0.000004, 19: 0.000004, 24: 0.010975, 25: 0.000004, 27: 0.000004, 3: 0.003645): 0.076191, 13: 0.122177, (4: 0.041399, 6: 0.061463): 0.049680): 0.016047, (16: 0.000004, 18: 0.007287, 5: 0.000004): 0.158867): 0.028871, (14: 0.007287, 22: 0.000004): 0.076985): 0.008709): 0.080409);
(C1: 0.012681, C17: 0.012870, ((C10: 0.000004, C11: 0.000004, C15: 0.003638, C2: 0.000004, C20: 0.000004, C21: 0.000004, C23: 0.000004, C26: 0.000004, C7: 0.000004, C8: 0.000004, C9: 0.000004): 0.060286, ((((C12: 0.000004, C19: 0.000004, C24: 0.010975, C25: 0.000004, C27: 0.000004, C3: 0.003645): 0.076191, C13: 0.122177, (C4: 0.041399, C6: 0.061463): 0.049680): 0.016047, (C16: 0.000004, C18: 0.007287, C5: 0.000004): 0.158867): 0.028871, (C14: 0.007287, C22: 0.000004): 0.076985): 0.008709): 0.080409);
Detailed output identifying parameters
kappa (ts/tv) = 3.30468
Parameters in M8 (beta&w>1):
p0 = 0.99999 p = 0.08219 q = 1.17633
(p1 = 0.00001) w = 1.00000
MLEs of dN/dS (w) for site classes (K=11)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.00001
w: 0.00000 0.00000 0.00000 0.00000 0.00005 0.00054 0.00415 0.02373 0.11042 0.45612 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
28..1 0.013 625.4 235.6 0.0595 0.0008 0.0133 0.5 3.1
28..17 0.013 625.4 235.6 0.0595 0.0008 0.0135 0.5 3.2
28..29 0.080 625.4 235.6 0.0595 0.0050 0.0846 3.1 19.9
29..30 0.060 625.4 235.6 0.0595 0.0038 0.0634 2.4 14.9
30..10 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..11 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..15 0.004 625.4 235.6 0.0595 0.0002 0.0038 0.1 0.9
30..2 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..20 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..21 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..23 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..26 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..7 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..8 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
30..9 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
29..31 0.009 625.4 235.6 0.0595 0.0005 0.0092 0.3 2.2
31..32 0.029 625.4 235.6 0.0595 0.0018 0.0304 1.1 7.2
32..33 0.016 625.4 235.6 0.0595 0.0010 0.0169 0.6 4.0
33..34 0.076 625.4 235.6 0.0595 0.0048 0.0801 3.0 18.9
34..12 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
34..19 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
34..24 0.011 625.4 235.6 0.0595 0.0007 0.0115 0.4 2.7
34..25 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
34..27 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
34..3 0.004 625.4 235.6 0.0595 0.0002 0.0038 0.1 0.9
33..13 0.122 625.4 235.6 0.0595 0.0076 0.1285 4.8 30.3
33..35 0.050 625.4 235.6 0.0595 0.0031 0.0523 1.9 12.3
35..4 0.041 625.4 235.6 0.0595 0.0026 0.0435 1.6 10.3
35..6 0.061 625.4 235.6 0.0595 0.0038 0.0647 2.4 15.2
32..36 0.159 625.4 235.6 0.0595 0.0099 0.1671 6.2 39.4
36..16 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
36..18 0.007 625.4 235.6 0.0595 0.0005 0.0077 0.3 1.8
36..5 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
31..37 0.077 625.4 235.6 0.0595 0.0048 0.0810 3.0 19.1
37..14 0.007 625.4 235.6 0.0595 0.0005 0.0077 0.3 1.8
37..22 0.000 625.4 235.6 0.0595 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
2 K 0.528 1.000 +- 0.606
138 I 0.546 1.058 +- 0.544
210 S 0.625 1.126 +- 0.599
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000
p : 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.000 0.000 0.000 0.004 0.027 0.103 0.277 0.588
ws: 0.961 0.028 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001
Time used: 27:18
Model 1: NearlyNeutral -2166.869861 Model 2: PositiveSelection -2166.869862 Model 7: beta -2163.727808 Model 8: beta&w>1 -2163.728090 Model 2 vs 1 -.000002 Model 8 vs 7 -.000564
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
