--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -976.74 -1001.78
2 -976.55 -1004.49
--------------------------------------
TOTAL -976.64 -1003.87
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.374488 0.002746 0.274309 0.477513 0.369983 1501.00 1501.00 1.000
r(A<->C){all} 0.172963 0.001720 0.097354 0.257416 0.171189 707.62 778.09 1.002
r(A<->G){all} 0.154770 0.001519 0.084823 0.234113 0.152091 639.39 671.04 1.000
r(A<->T){all} 0.140046 0.001208 0.076996 0.208505 0.137739 763.21 773.16 1.000
r(C<->G){all} 0.087480 0.001068 0.029624 0.153119 0.084854 649.62 806.65 1.001
r(C<->T){all} 0.407633 0.003213 0.296509 0.518160 0.406145 460.00 498.51 1.002
r(G<->T){all} 0.037107 0.000395 0.003231 0.075987 0.033682 920.24 961.96 1.000
pi(A){all} 0.284076 0.000510 0.238309 0.326567 0.283879 1243.05 1262.48 1.000
pi(C){all} 0.199402 0.000397 0.161118 0.237035 0.198504 1110.52 1129.30 1.000
pi(G){all} 0.234942 0.000460 0.193709 0.276810 0.234443 1046.43 1127.18 1.000
pi(T){all} 0.281580 0.000505 0.238363 0.326381 0.281214 1032.38 1043.84 1.001
alpha{1,2} 1.046073 0.668743 0.169190 2.785717 0.799385 1086.66 1149.13 1.000
alpha{3} 1.588614 1.156432 0.216970 3.789392 1.314102 1166.45 1222.72 1.001
pinvar{all} 0.266395 0.019998 0.000152 0.494542 0.269121 1008.16 1035.16 1.002
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -900.542915
Model 2: PositiveSelection -900.189021
Model 7: beta -901.920389
Model 8: beta&w>1 -900.191035
Model 2 vs 1 .707788
Model 8 vs 7 3.458708
-- Starting log on Wed Nov 02 20:11:07 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_NA_YP_009824984_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.06 sec, SCORE=1000, Nseq=23, Len=113
C1 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C2 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C3 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C4 -----MEIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C5 -----MDIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRIGYCRVPLKA
C6 -----MEIWHVSDAWLRRTRDFGVTRLEDFCFQFNYTQPRVGYCRVPLKA
C7 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C8 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C9 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C10 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C11 -----MEIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C12 -----MEIWHVSDAWLRNTRDFGVTRLEDFCFQFNYSQPRVGYCRVPLKA
C13 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C14 -----MDIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRIGYCRVPLKA
C15 -----MDIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRIGYCRVPLKA
C16 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C17 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C18 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C19 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C20 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C21 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C22 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C23 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
** *******.****** *********** ***:*********
C1 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C2 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C3 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C4 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVQQAVGKLVEEAVD
C5 WCSNQGKFAAQFTLKS-CEKSGQEIFITSFTAYDKTVKKAVSKLVEEAVD
C6 WCSNQGKFAAQFTLKS-CEKSGHPKFITSFTAYGKTVQQAVSKLVEEAVD
C7 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C8 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C9 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C10 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C11 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C12 WCSNQGKFAAQFTLKSKPADKGQEKFITSFTAYGKTVKQAVSKLVEEAVD
C13 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C14 WCSNQGKFAAQFTLKS-CEKSGQEIFITSFTAYDKTVKKAVSKLVEEAVD
C15 WCSNQGKFAAQFTLKS-CEKSGQEIFITSFTAYDKTVKKAVSKLVEEAVD
C16 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C17 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C18 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C19 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C20 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C21 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C22 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C23 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
**************** . *: ********.:**::**.******.*
C1 FILFRATQLERNV
C2 FIIWRATQLERNV
C3 FIIWRATQLERNV
C4 FILFRALLLERNV
C5 FIIWRATQLERYV
C6 FILFRALLLERNV
C7 FILFRATQLERNV
C8 FILFRATQLERNV
C9 FILFRATQLERNV
C10 FILFRATQLERNV
C11 FIIWRATQLERNV
C12 FIIWRATQLERNV
C13 FILFRATQLERNV
C14 FIIWRATQLERYV
C15 FIIWRATQLERYV
C16 FILFRATQLERNV
C17 FILFRATQLERNV
C18 FIIWRATQLERNV
C19 FIIWRATQLERNV
C20 FIIWRATQLERNV
C21 FILFRATQLERNV
C22 FIIWRATQLERNV
C23 FILFRATQLERNV
**::** *** *
-- Starting log on Wed Nov 02 20:13:52 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_NA_YP_009824984_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.11 sec, SCORE=991, Nseq=23, Len=113
C1 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C2 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C3 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C4 -----MEIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C5 -----MDIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRIGYCRVPLKA
C6 -----MEIWHVSDAWLRRTRDFGVTRLEDFCFQFNYTQPRVGYCRVPLKA
C7 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C8 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C9 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C10 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C11 -----MEIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C12 -----MEIWHVSDAWLRNTRDFGVTRLEDFCFQFNYSQPRVGYCRVPLKA
C13 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C14 -----MDIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRIGYCRVPLKA
C15 -----MDIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRIGYCRVPLKA
C16 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C17 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C18 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C19 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C20 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C21 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C22 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C23 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
** *******.****** *********** ***:*********
C1 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C2 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C3 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C4 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVQQAVGKLVEEAVD
C5 WCSNQGKFAAQFTLKS-CEKSGQEIFITSFTAYDKTVKKAVSKLVEEAVD
C6 WCSNQGKFAAQFTLKS-CEKSGHPKFITSFTAYGKTVQQAVSKLVEEAVD
C7 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C8 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C9 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C10 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C11 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C12 WCSNQGKFAAQFTLKSKPADKGQEKFITSFTAYGKTVKQAVSKLVEEAVD
C13 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C14 WCSNQGKFAAQFTLKS-CEKSGQEIFITSFTAYDKTVKKAVSKLVEEAVD
C15 WCSNQGKFAAQFTLKS-CEKSGQEIFITSFTAYDKTVKKAVSKLVEEAVD
C16 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C17 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C18 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C19 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C20 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C21 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C22 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C23 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
**************** . *: ********.:**::**.******.*
C1 FILFRATQLERNV
C2 FIIWRATQLERNV
C3 FIIWRATQLERNV
C4 FILFRALLLERNV
C5 FIIWRATQLERYV
C6 FILFRALLLERNV
C7 FILFRATQLERNV
C8 FILFRATQLERNV
C9 FILFRATQLERNV
C10 FILFRATQLERNV
C11 FIIWRATQLERNV
C12 FIIWRATQLERNV
C13 FILFRATQLERNV
C14 FIIWRATQLERYV
C15 FIIWRATQLERYV
C16 FILFRATQLERNV
C17 FILFRATQLERNV
C18 FIIWRATQLERNV
C19 FIIWRATQLERNV
C20 FIIWRATQLERNV
C21 FILFRATQLERNV
C22 FIIWRATQLERNV
C23 FILFRATQLERNV
**::** *** *
-- Starting log on Wed Nov 02 21:35:31 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A59_NA_YP_009824984_1_NA_USA_Unknown_Murine_coronavirus.result/gapped_alignment/codeml,A59_NA_YP_009824984_1_NA_USA_Unknown_Murine_coronavirus.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 23 taxa and 339 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C1
Taxon 2 -> C10
Taxon 3 -> C11
Taxon 4 -> C12
Taxon 5 -> C13
Taxon 6 -> C14
Taxon 7 -> C15
Taxon 8 -> C16
Taxon 9 -> C17
Taxon 10 -> C18
Taxon 11 -> C19
Taxon 12 -> C2
Taxon 13 -> C20
Taxon 14 -> C21
Taxon 15 -> C22
Taxon 16 -> C23
Taxon 17 -> C3
Taxon 18 -> C4
Taxon 19 -> C5
Taxon 20 -> C6
Taxon 21 -> C7
Taxon 22 -> C8
Taxon 23 -> C9
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1667424934
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 327927445
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 8749680763
Seed = 837960635
Swapseed = 1667424934
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 25 unique site patterns
Division 2 has 24 unique site patterns
Division 3 has 43 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -2198.373281 -- 68.461457
Chain 2 -- -2321.823975 -- 68.461457
Chain 3 -- -2074.280481 -- 68.461457
Chain 4 -- -2217.494351 -- 68.461457
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -2368.599838 -- 68.461457
Chain 2 -- -2112.778579 -- 68.461457
Chain 3 -- -2316.189471 -- 68.461457
Chain 4 -- -2240.554580 -- 68.461457
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-2198.373] (-2321.824) (-2074.280) (-2217.494) * [-2368.600] (-2112.779) (-2316.189) (-2240.555)
1000 -- (-1084.864) [-1040.823] (-1049.947) (-1100.228) * (-1053.482) (-1062.242) [-1034.437] (-1038.800) -- 0:00:00
2000 -- (-1004.640) [-999.733] (-1017.007) (-1025.232) * (-999.357) (-1015.775) [-1000.095] (-1015.231) -- 0:08:19
3000 -- (-997.210) [-995.679] (-1000.523) (-1015.459) * (-987.613) (-996.181) [-988.389] (-992.444) -- 0:11:04
4000 -- [-993.882] (-999.571) (-998.126) (-999.873) * (-997.381) [-981.267] (-1014.791) (-997.395) -- 0:08:18
5000 -- [-984.675] (-995.654) (-996.656) (-994.316) * (-1002.756) (-986.516) [-987.736] (-995.279) -- 0:09:57
Average standard deviation of split frequencies: 0.079450
6000 -- (-997.140) [-981.248] (-994.457) (-983.059) * (-989.314) [-993.888] (-999.810) (-992.725) -- 0:08:17
7000 -- [-993.960] (-999.191) (-989.100) (-994.993) * [-983.855] (-988.009) (-998.806) (-999.459) -- 0:09:27
8000 -- [-983.163] (-1005.733) (-987.238) (-988.092) * (-997.354) [-993.276] (-991.385) (-983.922) -- 0:10:20
9000 -- [-987.363] (-984.605) (-986.389) (-992.573) * (-1002.019) (-1005.109) (-998.034) [-996.678] -- 0:09:10
10000 -- [-997.557] (-989.112) (-993.225) (-994.536) * (-988.063) (-987.161) [-992.119] (-1000.161) -- 0:09:54
Average standard deviation of split frequencies: 0.063042
11000 -- [-990.554] (-993.207) (-992.399) (-979.199) * (-999.542) [-982.657] (-984.081) (-1003.531) -- 0:10:29
12000 -- (-991.550) [-995.952] (-1010.369) (-981.915) * (-995.359) [-980.391] (-1000.532) (-1002.327) -- 0:09:36
13000 -- [-998.176] (-997.870) (-997.540) (-984.661) * (-986.355) [-985.927] (-1003.813) (-995.921) -- 0:10:07
14000 -- (-988.694) [-982.788] (-1001.487) (-993.902) * [-980.044] (-992.474) (-994.366) (-1001.227) -- 0:10:33
15000 -- [-980.036] (-980.808) (-1000.549) (-993.451) * [-986.571] (-986.906) (-994.085) (-982.366) -- 0:09:51
Average standard deviation of split frequencies: 0.056198
16000 -- (-988.774) (-995.256) [-992.342] (-994.315) * (-994.247) (-989.884) [-991.222] (-993.829) -- 0:10:15
17000 -- [-983.232] (-986.769) (-1011.149) (-982.013) * (-987.024) [-996.145] (-977.909) (-1008.922) -- 0:09:38
18000 -- (-996.645) [-978.992] (-1007.429) (-996.161) * [-987.678] (-991.452) (-984.643) (-998.752) -- 0:10:00
19000 -- (-991.208) [-986.555] (-996.513) (-985.325) * [-987.358] (-989.415) (-994.241) (-999.492) -- 0:10:19
20000 -- [-984.187] (-989.774) (-990.188) (-982.774) * (-986.512) (-999.926) (-991.655) [-983.905] -- 0:09:48
Average standard deviation of split frequencies: 0.044507
21000 -- (-991.830) (-991.965) (-986.408) [-987.945] * (-992.843) (-1003.607) (-1002.644) [-987.924] -- 0:10:06
22000 -- [-998.420] (-986.847) (-990.382) (-1005.914) * (-995.652) (-992.199) (-989.335) [-985.570] -- 0:10:22
23000 -- (-1002.825) [-978.603] (-985.191) (-993.608) * (-1005.092) [-986.735] (-980.933) (-1006.226) -- 0:09:54
24000 -- (-1000.567) [-976.915] (-988.959) (-982.939) * [-991.180] (-987.962) (-987.768) (-1000.585) -- 0:10:10
25000 -- (-997.426) (-992.485) (-987.624) [-974.274] * (-986.034) (-1001.883) [-985.356] (-992.134) -- 0:09:45
Average standard deviation of split frequencies: 0.041701
26000 -- (-986.171) (-991.991) (-989.522) [-982.029] * [-987.088] (-992.531) (-992.481) (-992.582) -- 0:09:59
27000 -- (-998.558) [-991.562] (-1008.184) (-999.165) * (-993.382) (-989.693) [-989.434] (-981.236) -- 0:10:12
28000 -- [-989.733] (-983.977) (-994.221) (-989.686) * [-983.892] (-1002.931) (-990.247) (-1001.820) -- 0:09:50
29000 -- (-982.838) (-1017.243) (-1003.579) [-988.652] * (-997.533) [-996.454] (-988.246) (-983.578) -- 0:10:02
30000 -- (-990.682) (-989.947) (-989.542) [-996.785] * [-988.347] (-994.138) (-979.344) (-974.617) -- 0:10:14
Average standard deviation of split frequencies: 0.039967
31000 -- (-984.787) (-990.415) [-988.258] (-985.958) * (-990.663) [-980.866] (-980.855) (-987.421) -- 0:09:53
32000 -- (-990.040) (-986.317) (-981.925) [-979.986] * (-989.435) (-989.720) [-993.547] (-986.956) -- 0:10:05
33000 -- (-991.874) (-1007.787) (-991.318) [-986.299] * (-1002.148) (-991.313) [-988.204] (-984.258) -- 0:09:46
34000 -- (-988.303) (-996.701) [-990.474] (-1004.912) * [-1000.624] (-983.822) (-994.785) (-988.298) -- 0:09:56
35000 -- [-988.654] (-989.873) (-997.282) (-994.765) * (-1005.667) (-986.933) [-991.602] (-999.712) -- 0:10:06
Average standard deviation of split frequencies: 0.038576
36000 -- (-994.027) [-979.619] (-981.257) (-996.243) * (-993.199) [-980.127] (-980.903) (-999.579) -- 0:09:49
37000 -- (-1005.531) [-970.951] (-999.378) (-987.562) * [-985.575] (-979.689) (-998.836) (-1016.141) -- 0:09:58
38000 -- (-983.757) (-1002.126) [-996.458] (-990.108) * (-988.836) (-979.705) [-998.608] (-988.209) -- 0:10:07
39000 -- (-985.828) (-997.784) (-1005.333) [-990.760] * (-984.708) [-986.872] (-996.426) (-988.339) -- 0:09:51
40000 -- (-994.741) (-987.216) [-975.473] (-998.585) * (-987.215) (-996.266) [-989.671] (-993.378) -- 0:10:00
Average standard deviation of split frequencies: 0.037844
41000 -- (-986.809) (-998.861) [-990.237] (-997.022) * (-988.094) (-987.844) (-1001.137) [-987.961] -- 0:10:08
42000 -- (-991.038) [-979.825] (-988.518) (-983.534) * (-994.816) [-989.613] (-1002.815) (-989.503) -- 0:09:53
43000 -- (-1010.561) (-982.555) [-985.452] (-994.534) * (-989.925) (-978.490) [-990.482] (-996.037) -- 0:10:00
44000 -- (-998.511) (-1002.741) [-980.467] (-995.241) * (-985.108) (-1008.281) (-992.254) [-977.056] -- 0:09:46
45000 -- (-991.133) (-1003.416) [-984.154] (-990.167) * (-1000.451) (-993.702) [-985.432] (-997.967) -- 0:09:54
Average standard deviation of split frequencies: 0.034387
46000 -- (-989.739) (-1013.190) [-986.939] (-984.234) * [-985.573] (-1000.802) (-989.465) (-985.663) -- 0:10:01
47000 -- (-989.981) (-991.193) [-980.352] (-996.526) * (-987.392) (-984.668) [-1001.965] (-993.867) -- 0:09:48
48000 -- (-995.041) (-1004.765) [-992.962] (-986.500) * [-980.059] (-994.157) (-1007.967) (-992.372) -- 0:09:55
49000 -- (-998.211) (-995.296) [-981.760] (-981.229) * (-990.792) (-1002.452) [-990.438] (-1006.610) -- 0:09:42
50000 -- (-991.587) (-1006.116) [-996.940] (-1002.963) * (-1008.572) (-986.569) (-1002.755) [-994.132] -- 0:09:49
Average standard deviation of split frequencies: 0.032678
51000 -- (-984.541) (-980.578) (-1009.878) [-993.487] * (-987.941) [-982.295] (-984.946) (-996.996) -- 0:09:55
52000 -- (-997.377) [-989.001] (-989.407) (-990.669) * (-993.115) (-986.730) [-985.064] (-992.783) -- 0:09:43
53000 -- (-992.551) (-981.987) [-981.266] (-994.153) * (-982.331) (-986.600) (-995.261) [-983.450] -- 0:09:49
54000 -- (-980.653) (-1010.764) [-993.206] (-1005.608) * [-985.930] (-994.269) (-1002.975) (-997.147) -- 0:09:38
55000 -- (-999.551) [-996.320] (-996.421) (-994.655) * (-991.931) [-978.375] (-998.887) (-1001.445) -- 0:09:44
Average standard deviation of split frequencies: 0.027621
56000 -- [-978.421] (-989.192) (-1001.114) (-989.552) * (-1018.078) (-988.793) [-991.324] (-999.831) -- 0:09:50
57000 -- [-979.541] (-1005.956) (-1000.164) (-990.728) * (-1003.731) [-985.611] (-985.052) (-1002.753) -- 0:09:39
58000 -- [-992.526] (-989.075) (-1000.553) (-987.062) * (-994.592) (-986.815) (-992.522) [-978.805] -- 0:09:44
59000 -- (-994.512) (-982.215) (-997.795) [-984.485] * (-1005.685) (-998.893) [-987.209] (-989.662) -- 0:09:34
60000 -- [-989.294] (-994.395) (-1005.595) (-990.447) * [-989.381] (-998.513) (-979.540) (-1006.437) -- 0:09:39
Average standard deviation of split frequencies: 0.026319
61000 -- (-993.505) (-996.193) (-1007.528) [-982.227] * (-987.823) (-983.756) [-987.431] (-1004.022) -- 0:09:44
62000 -- (-992.772) (-997.301) (-1002.433) [-975.721] * [-977.215] (-980.251) (-996.394) (-1010.364) -- 0:09:34
63000 -- (-979.598) (-1008.100) [-1004.913] (-995.768) * (-987.957) [-988.188] (-998.499) (-1005.116) -- 0:09:40
64000 -- (-998.550) (-1000.422) (-981.104) [-985.477] * (-989.355) (-985.191) [-990.833] (-999.611) -- 0:09:45
65000 -- (-1012.781) (-983.974) [-993.431] (-987.167) * (-985.510) (-988.956) [-983.321] (-983.250) -- 0:09:35
Average standard deviation of split frequencies: 0.026784
66000 -- (-1000.696) (-1003.289) (-993.210) [-992.704] * (-996.087) [-986.588] (-980.777) (-1003.326) -- 0:09:40
67000 -- (-993.610) [-974.414] (-990.974) (-992.723) * [-983.478] (-985.176) (-1011.579) (-995.615) -- 0:09:44
68000 -- (-992.861) [-984.182] (-994.836) (-992.325) * [-979.444] (-979.989) (-997.359) (-1000.794) -- 0:09:35
69000 -- (-989.274) (-1004.726) [-976.618] (-999.333) * (-974.067) [-990.948] (-998.372) (-996.432) -- 0:09:40
70000 -- (-990.990) (-1011.893) [-988.210] (-989.350) * (-996.360) (-987.250) [-991.433] (-994.656) -- 0:09:31
Average standard deviation of split frequencies: 0.027088
71000 -- (-994.020) (-1007.414) [-987.641] (-987.046) * [-990.882] (-986.502) (-997.476) (-1017.293) -- 0:09:35
72000 -- [-986.387] (-986.349) (-989.145) (-992.887) * (-991.953) (-1013.043) (-998.440) [-992.586] -- 0:09:40
73000 -- (-1005.654) (-1003.381) (-979.879) [-988.512] * (-996.064) (-1009.269) (-991.972) [-996.392] -- 0:09:31
74000 -- (-985.829) (-993.144) (-990.102) [-984.403] * [-984.074] (-989.510) (-1007.820) (-993.148) -- 0:09:35
75000 -- [-985.099] (-992.169) (-986.760) (-992.303) * [-991.885] (-994.816) (-1007.362) (-1000.924) -- 0:09:39
Average standard deviation of split frequencies: 0.026168
76000 -- (-997.785) (-987.823) [-985.003] (-980.898) * (-1003.831) [-983.318] (-992.955) (-992.445) -- 0:09:31
77000 -- [-997.419] (-1026.152) (-992.589) (-986.844) * (-984.185) (-993.539) (-998.237) [-989.145] -- 0:09:35
78000 -- (-1012.053) [-984.711] (-986.447) (-1004.803) * (-1003.551) [-983.205] (-989.563) (-1002.342) -- 0:09:27
79000 -- (-1000.170) [-991.925] (-990.149) (-999.205) * (-997.557) [-986.693] (-1013.333) (-1000.439) -- 0:09:31
80000 -- [-996.387] (-996.603) (-999.070) (-993.379) * [-986.976] (-986.519) (-996.888) (-990.382) -- 0:09:35
Average standard deviation of split frequencies: 0.024786
81000 -- (-994.729) (-998.230) (-990.918) [-996.494] * [-990.325] (-1000.656) (-1001.579) (-987.188) -- 0:09:27
82000 -- (-993.178) (-996.773) (-997.236) [-986.442] * (-1001.092) (-1004.502) (-997.908) [-982.414] -- 0:09:30
83000 -- (-998.750) [-991.053] (-993.693) (-990.859) * [-990.617] (-1002.700) (-1010.895) (-991.774) -- 0:09:34
84000 -- (-999.926) (-990.266) (-1004.647) [-991.567] * (-995.678) (-990.874) (-989.529) [-987.446] -- 0:09:27
85000 -- (-1000.528) (-1002.878) [-985.347] (-994.183) * (-991.084) (-994.657) [-989.397] (-1002.656) -- 0:09:30
Average standard deviation of split frequencies: 0.024401
86000 -- (-986.142) (-995.457) (-990.446) [-989.952] * (-995.020) (-1003.739) [-993.597] (-987.699) -- 0:09:23
87000 -- (-989.123) [-990.767] (-999.065) (-992.278) * (-999.637) (-1006.291) (-1012.057) [-984.420] -- 0:09:26
88000 -- [-989.890] (-999.115) (-990.029) (-985.742) * (-993.313) [-983.492] (-995.203) (-1005.706) -- 0:09:30
89000 -- (-994.596) (-984.629) [-986.155] (-985.261) * (-988.096) [-997.121] (-1004.458) (-1012.250) -- 0:09:33
90000 -- (-983.786) [-987.380] (-984.252) (-990.193) * [-984.340] (-989.421) (-1000.015) (-992.417) -- 0:09:26
Average standard deviation of split frequencies: 0.024736
91000 -- (-995.392) (-989.519) (-1006.156) [-980.710] * (-986.762) (-1004.484) [-983.027] (-987.523) -- 0:09:29
92000 -- (-989.365) (-1001.006) (-987.159) [-984.636] * (-984.922) (-983.274) [-994.125] (-983.848) -- 0:09:22
93000 -- (-993.064) (-987.027) (-988.362) [-985.626] * (-990.108) (-1003.497) [-1004.110] (-986.664) -- 0:09:25
94000 -- [-984.838] (-998.737) (-983.708) (-987.900) * [-984.908] (-1005.504) (-995.975) (-999.407) -- 0:09:28
95000 -- (-989.069) (-995.056) [-984.480] (-990.957) * (-992.511) (-991.870) [-983.768] (-989.143) -- 0:09:22
Average standard deviation of split frequencies: 0.024007
96000 -- (-994.997) (-1002.830) [-984.392] (-996.408) * [-977.742] (-993.891) (-982.506) (-993.942) -- 0:09:25
97000 -- (-1001.129) (-1009.486) (-991.025) [-993.332] * [-987.305] (-982.679) (-1008.485) (-1005.971) -- 0:09:27
98000 -- (-1000.095) (-984.302) (-992.443) [-985.270] * (-1007.914) [-977.820] (-992.738) (-998.818) -- 0:09:21
99000 -- (-992.078) [-987.827] (-996.985) (-982.418) * [-983.343] (-986.429) (-990.689) (-994.996) -- 0:09:24
100000 -- (-987.770) [-995.195] (-985.810) (-995.920) * (-987.304) [-987.111] (-996.387) (-995.072) -- 0:09:27
Average standard deviation of split frequencies: 0.020992
101000 -- (-1001.846) [-981.559] (-984.740) (-1007.955) * (-981.010) [-980.081] (-994.989) (-991.200) -- 0:09:20
102000 -- [-997.106] (-993.682) (-1000.912) (-998.885) * [-989.611] (-1000.471) (-992.972) (-991.156) -- 0:09:23
103000 -- (-995.039) [-988.681] (-1003.411) (-983.057) * (-989.534) (-986.476) (-994.308) [-987.728] -- 0:09:26
104000 -- (-1004.051) [-978.091] (-995.260) (-984.513) * (-996.528) (-994.366) (-992.895) [-991.831] -- 0:09:20
105000 -- (-995.457) (-987.805) (-993.947) [-985.462] * (-1001.242) [-985.095] (-986.964) (-1005.024) -- 0:09:22
Average standard deviation of split frequencies: 0.019040
106000 -- (-992.740) [-983.081] (-1004.779) (-984.156) * (-991.944) (-991.219) [-985.058] (-993.425) -- 0:09:25
107000 -- [-986.967] (-995.802) (-984.329) (-988.219) * (-989.010) (-988.471) (-985.196) [-979.979] -- 0:09:19
108000 -- (-998.990) (-1020.424) [-987.157] (-1003.313) * (-984.995) (-992.389) (-995.040) [-994.752] -- 0:09:21
109000 -- [-984.883] (-998.913) (-982.925) (-989.065) * (-979.674) (-1002.399) (-991.505) [-985.988] -- 0:09:24
110000 -- [-987.265] (-1005.026) (-988.259) (-1001.974) * (-997.077) (-989.220) (-980.556) [-981.522] -- 0:09:18
Average standard deviation of split frequencies: 0.016011
111000 -- (-996.190) (-995.957) [-1000.527] (-989.467) * (-987.202) (-984.641) (-983.607) [-980.586] -- 0:09:20
112000 -- [-976.628] (-998.810) (-990.954) (-992.024) * (-995.362) [-992.247] (-1011.478) (-982.147) -- 0:09:22
113000 -- (-982.456) (-992.461) (-999.541) [-991.535] * (-999.321) (-981.691) (-995.269) [-981.336] -- 0:09:17
114000 -- [-989.172] (-985.770) (-997.551) (-990.908) * (-996.532) [-982.882] (-1007.909) (-1002.416) -- 0:09:19
115000 -- (-986.941) (-999.187) [-979.425] (-994.431) * [-981.488] (-999.102) (-999.950) (-1006.424) -- 0:09:21
Average standard deviation of split frequencies: 0.015675
116000 -- (-986.886) [-981.535] (-994.072) (-1000.760) * [-990.620] (-1010.189) (-992.509) (-1000.954) -- 0:09:16
117000 -- (-998.836) (-989.363) (-997.916) [-985.649] * [-986.683] (-987.611) (-988.993) (-985.290) -- 0:09:18
118000 -- [-983.939] (-977.448) (-1014.297) (-991.107) * (-985.947) [-982.931] (-992.103) (-991.283) -- 0:09:20
119000 -- (-995.953) (-979.209) (-1013.932) [-988.718] * [-995.803] (-988.028) (-995.126) (-998.357) -- 0:09:15
120000 -- (-990.442) (-998.629) (-1009.484) [-984.630] * (-1000.501) (-988.799) (-998.773) [-981.825] -- 0:09:17
Average standard deviation of split frequencies: 0.016974
121000 -- (-1001.049) (-989.694) [-979.733] (-993.052) * (-990.812) (-993.423) [-988.474] (-993.857) -- 0:09:12
122000 -- (-991.766) (-976.943) (-1001.357) [-990.765] * (-973.108) (-989.814) (-994.125) [-978.131] -- 0:09:14
123000 -- (-994.005) [-984.212] (-988.243) (-988.253) * (-988.585) (-985.307) [-986.871] (-985.455) -- 0:09:16
124000 -- [-988.988] (-991.681) (-989.736) (-995.178) * (-982.515) [-984.951] (-1000.822) (-981.494) -- 0:09:11
125000 -- (-993.442) [-985.866] (-998.374) (-999.663) * [-988.515] (-999.684) (-984.155) (-1000.268) -- 0:09:13
Average standard deviation of split frequencies: 0.015810
126000 -- (-986.564) [-989.286] (-993.937) (-1001.889) * (-979.092) (-992.361) (-1002.030) [-989.334] -- 0:09:14
127000 -- (-994.260) [-1003.320] (-992.280) (-1012.298) * (-986.415) [-982.642] (-1000.854) (-981.303) -- 0:09:09
128000 -- (-1000.561) (-993.799) (-992.152) [-1004.329] * [-982.635] (-995.521) (-1001.431) (-981.872) -- 0:09:11
129000 -- (-997.659) [-992.908] (-1004.938) (-988.933) * [-979.626] (-995.518) (-997.396) (-977.796) -- 0:09:06
130000 -- (-1000.938) (-986.529) [-989.342] (-994.299) * (-985.504) (-1000.168) (-1003.643) [-980.937] -- 0:09:08
Average standard deviation of split frequencies: 0.015595
131000 -- [-993.890] (-972.839) (-984.693) (-1000.165) * (-999.867) (-1009.810) (-982.162) [-987.812] -- 0:09:10
132000 -- [-985.848] (-999.377) (-1010.424) (-1000.908) * (-995.618) (-1003.450) [-997.047] (-988.371) -- 0:09:05
133000 -- (-989.623) (-994.297) [-990.160] (-998.882) * (-1001.241) (-991.476) (-983.157) [-980.124] -- 0:09:07
134000 -- (-991.603) [-996.810] (-984.527) (-992.106) * (-989.571) (-992.862) [-993.388] (-996.751) -- 0:09:09
135000 -- (-980.236) (-996.594) [-987.618] (-991.406) * (-983.063) (-992.215) (-992.276) [-988.891] -- 0:09:04
Average standard deviation of split frequencies: 0.013172
136000 -- (-993.850) (-1004.575) [-992.060] (-995.962) * (-983.424) (-1010.633) [-997.281] (-998.221) -- 0:09:06
137000 -- [-980.090] (-990.294) (-993.225) (-984.919) * (-985.769) (-1002.219) [-984.707] (-990.789) -- 0:09:01
138000 -- (-985.619) (-1001.730) (-996.352) [-980.450] * (-986.881) [-998.160] (-994.974) (-998.919) -- 0:09:03
139000 -- (-984.820) (-991.215) [-981.440] (-984.035) * [-981.736] (-989.361) (-997.272) (-984.554) -- 0:09:05
140000 -- [-983.587] (-1006.125) (-986.640) (-1001.013) * (-1000.954) [-990.721] (-990.263) (-983.181) -- 0:09:00
Average standard deviation of split frequencies: 0.013058
141000 -- [-984.351] (-985.996) (-995.688) (-1002.414) * (-985.687) (-995.153) [-986.474] (-996.440) -- 0:09:02
142000 -- (-985.600) [-980.328] (-988.338) (-1000.102) * (-989.701) (-1003.714) (-983.498) [-994.313] -- 0:09:03
143000 -- [-992.516] (-994.586) (-989.137) (-1001.626) * (-996.094) (-1007.332) (-979.074) [-999.169] -- 0:08:59
144000 -- (-1020.648) (-989.083) [-989.690] (-986.359) * (-1001.915) (-1005.604) (-980.755) [-982.338] -- 0:09:00
145000 -- (-1004.674) (-1004.157) (-994.164) [-984.438] * (-995.384) (-992.051) [-985.228] (-997.538) -- 0:08:56
Average standard deviation of split frequencies: 0.012082
146000 -- (-1002.136) [-991.178] (-983.142) (-986.295) * (-987.439) (-996.186) [-991.252] (-985.022) -- 0:08:58
147000 -- [-999.918] (-994.258) (-1007.466) (-982.367) * (-1003.188) (-987.364) (-1000.522) [-981.327] -- 0:08:59
148000 -- (-980.915) (-992.711) (-992.720) [-991.433] * [-992.537] (-990.730) (-989.671) (-1012.632) -- 0:08:55
149000 -- (-999.624) (-996.691) (-983.304) [-985.482] * (-989.745) (-1003.557) (-1016.400) [-988.277] -- 0:08:56
150000 -- [-984.801] (-978.448) (-991.413) (-1010.787) * (-993.796) (-1007.871) (-991.780) [-986.544] -- 0:08:58
Average standard deviation of split frequencies: 0.012307
151000 -- [-986.857] (-981.737) (-992.664) (-996.600) * (-987.867) (-992.438) [-971.708] (-998.846) -- 0:08:54
152000 -- (-991.554) [-982.082] (-996.640) (-988.884) * (-993.989) [-987.626] (-992.136) (-987.497) -- 0:08:55
153000 -- (-991.034) [-987.189] (-988.610) (-991.743) * (-992.129) (-989.410) (-996.531) [-982.110] -- 0:08:51
154000 -- [-991.151] (-982.519) (-993.217) (-996.607) * (-1000.176) [-987.347] (-989.137) (-999.290) -- 0:08:52
155000 -- (-981.057) [-990.416] (-992.540) (-990.586) * (-1006.548) [-985.056] (-988.300) (-1001.813) -- 0:08:54
Average standard deviation of split frequencies: 0.010778
156000 -- (-996.559) [-986.634] (-991.886) (-985.008) * (-998.726) (-983.566) [-981.725] (-988.786) -- 0:08:50
157000 -- (-989.310) (-998.864) (-986.702) [-989.909] * (-1006.617) [-992.159] (-995.832) (-996.809) -- 0:08:51
158000 -- (-985.036) (-989.655) [-988.221] (-1005.257) * [-992.266] (-985.118) (-1021.465) (-1005.267) -- 0:08:52
159000 -- (-1005.060) [-982.236] (-992.577) (-992.596) * (-996.038) (-993.574) (-1000.685) [-995.643] -- 0:08:48
160000 -- (-1004.895) (-995.060) [-997.942] (-999.216) * (-983.641) [-986.075] (-996.951) (-1002.223) -- 0:08:50
Average standard deviation of split frequencies: 0.010269
161000 -- (-991.002) [-978.889] (-997.238) (-984.989) * (-987.925) (-991.295) (-991.030) [-981.373] -- 0:08:46
162000 -- (-995.789) (-996.979) (-986.843) [-978.051] * (-1005.353) (-992.517) [-978.113] (-994.978) -- 0:08:47
163000 -- (-998.816) [-980.277] (-992.570) (-987.525) * (-1005.580) (-997.360) [-988.632] (-985.216) -- 0:08:48
164000 -- (-1001.351) (-994.550) [-988.914] (-993.220) * (-994.448) (-994.856) (-975.836) [-994.344] -- 0:08:45
165000 -- [-987.608] (-998.873) (-988.431) (-996.583) * [-981.101] (-992.975) (-998.794) (-995.924) -- 0:08:46
Average standard deviation of split frequencies: 0.010318
166000 -- (-981.818) (-1000.581) [-989.011] (-1008.228) * (-1003.508) (-1000.176) [-979.921] (-983.646) -- 0:08:47
167000 -- [-979.564] (-998.089) (-990.477) (-1000.695) * (-1001.057) (-997.306) [-996.941] (-1001.553) -- 0:08:43
168000 -- (-998.030) (-986.457) [-980.388] (-985.541) * [-980.585] (-1001.246) (-987.179) (-989.177) -- 0:08:44
169000 -- [-1010.332] (-986.128) (-984.618) (-1003.098) * (-999.190) (-1007.704) (-1005.924) [-992.390] -- 0:08:46
170000 -- [-996.617] (-977.802) (-1014.158) (-998.985) * [-988.275] (-996.453) (-979.516) (-995.090) -- 0:08:42
Average standard deviation of split frequencies: 0.009801
171000 -- (-993.131) [-981.589] (-995.353) (-1007.821) * (-1003.904) (-988.119) [-986.486] (-988.047) -- 0:08:43
172000 -- [-979.042] (-984.331) (-990.170) (-995.182) * (-985.115) [-978.198] (-989.862) (-978.251) -- 0:08:39
173000 -- (-994.046) [-978.851] (-1001.118) (-1009.039) * (-993.030) [-988.157] (-1004.400) (-984.758) -- 0:08:41
174000 -- (-998.097) (-993.269) [-996.694] (-1000.274) * (-997.138) (-997.616) [-989.949] (-992.930) -- 0:08:42
175000 -- (-1001.575) [-981.119] (-982.589) (-1016.183) * (-996.239) (-992.636) [-988.451] (-987.487) -- 0:08:38
Average standard deviation of split frequencies: 0.010023
176000 -- (-998.750) [-996.845] (-990.732) (-1008.671) * [-986.391] (-999.256) (-992.273) (-987.340) -- 0:08:39
177000 -- (-994.516) [-989.730] (-985.452) (-1006.240) * (-990.313) (-995.328) (-999.954) [-990.119] -- 0:08:40
178000 -- (-991.636) [-977.724] (-978.312) (-1010.259) * (-987.686) (-1002.352) (-996.723) [-980.268] -- 0:08:37
179000 -- (-990.881) (-982.276) [-991.696] (-1014.269) * [-978.517] (-980.410) (-994.892) (-991.585) -- 0:08:38
180000 -- (-981.509) (-995.774) [-984.773] (-1006.936) * (-1002.892) [-985.107] (-998.918) (-997.144) -- 0:08:34
Average standard deviation of split frequencies: 0.010437
181000 -- (-1005.410) (-993.772) (-1005.423) [-981.895] * (-980.012) (-994.618) (-1000.756) [-996.638] -- 0:08:35
182000 -- (-1003.190) (-994.133) [-993.149] (-995.664) * (-988.571) (-994.661) (-996.720) [-976.911] -- 0:08:36
183000 -- (-983.560) [-989.077] (-985.819) (-986.272) * (-989.565) (-1004.097) (-985.520) [-985.173] -- 0:08:37
184000 -- (-995.475) (-995.088) [-988.094] (-995.502) * (-982.630) (-988.213) (-988.228) [-984.251] -- 0:08:34
185000 -- (-994.900) [-982.231] (-985.982) (-993.763) * (-984.202) (-991.324) [-996.647] (-991.505) -- 0:08:35
Average standard deviation of split frequencies: 0.011405
186000 -- (-983.912) (-999.059) (-997.474) [-979.977] * [-989.594] (-991.338) (-992.436) (-1001.688) -- 0:08:36
187000 -- (-990.540) (-992.185) [-987.461] (-989.963) * (-992.127) (-987.838) (-999.842) [-988.841] -- 0:08:33
188000 -- (-982.263) (-991.152) [-995.788] (-989.781) * (-983.182) [-984.884] (-993.689) (-985.021) -- 0:08:33
189000 -- [-993.454] (-1006.239) (-997.826) (-984.952) * (-997.795) (-999.732) (-984.726) [-978.895] -- 0:08:30
190000 -- (-986.669) [-979.669] (-990.555) (-1001.283) * (-1003.060) (-1003.681) [-986.892] (-989.700) -- 0:08:31
Average standard deviation of split frequencies: 0.011424
191000 -- [-997.930] (-996.746) (-1009.756) (-998.315) * [-987.886] (-992.712) (-987.326) (-996.726) -- 0:08:32
192000 -- (-990.120) [-978.656] (-993.461) (-992.878) * (-986.608) [-991.054] (-997.788) (-997.148) -- 0:08:29
193000 -- (-997.653) [-991.503] (-990.592) (-991.949) * (-989.475) (-992.956) [-995.525] (-998.192) -- 0:08:30
194000 -- [-1004.109] (-986.381) (-1008.363) (-1000.853) * [-992.006] (-993.234) (-995.691) (-991.385) -- 0:08:31
195000 -- (-989.902) (-1004.786) (-994.399) [-982.517] * (-980.839) (-1004.592) [-984.057] (-986.336) -- 0:08:27
Average standard deviation of split frequencies: 0.010865
196000 -- (-1000.406) (-996.470) [-984.963] (-1004.751) * (-993.611) [-974.612] (-987.587) (-998.835) -- 0:08:28
197000 -- (-1000.996) (-997.013) [-977.523] (-994.485) * [-982.399] (-986.214) (-1001.851) (-990.276) -- 0:08:25
198000 -- [-980.952] (-993.529) (-978.106) (-998.021) * (-982.221) [-983.730] (-999.072) (-1000.841) -- 0:08:26
199000 -- (-993.512) (-1007.774) [-981.480] (-992.976) * [-990.901] (-991.042) (-996.007) (-997.017) -- 0:08:27
200000 -- (-1000.775) (-984.242) [-987.923] (-1002.564) * (-992.148) (-988.904) (-988.856) [-996.611] -- 0:08:24
Average standard deviation of split frequencies: 0.010774
201000 -- (-1011.438) (-991.188) [-982.751] (-987.647) * [-977.659] (-1004.416) (-994.484) (-983.276) -- 0:08:24
202000 -- (-999.031) (-987.487) (-988.464) [-992.133] * [-993.989] (-1003.115) (-986.671) (-998.934) -- 0:08:25
203000 -- (-986.887) [-985.600] (-984.684) (-1001.532) * [-995.261] (-994.760) (-988.950) (-995.515) -- 0:08:22
204000 -- [-988.767] (-980.366) (-993.723) (-996.759) * (-984.782) (-1001.280) [-979.118] (-985.515) -- 0:08:23
205000 -- (-988.421) [-991.105] (-982.565) (-1005.629) * (-991.683) [-989.954] (-1001.279) (-994.240) -- 0:08:20
Average standard deviation of split frequencies: 0.009548
206000 -- [-983.631] (-995.030) (-1001.301) (-994.694) * (-983.772) (-995.394) (-989.300) [-985.984] -- 0:08:21
207000 -- [-987.287] (-986.083) (-988.293) (-981.837) * (-992.026) [-979.282] (-985.482) (-1012.051) -- 0:08:21
208000 -- (-992.926) [-993.520] (-989.810) (-1004.419) * [-988.538] (-999.399) (-1000.660) (-983.181) -- 0:08:18
209000 -- [-991.491] (-997.022) (-995.122) (-1000.944) * (-995.455) (-1006.904) (-995.418) [-985.022] -- 0:08:19
210000 -- (-989.984) (-1003.678) [-986.949] (-997.799) * [-984.855] (-997.731) (-993.270) (-994.923) -- 0:08:20
Average standard deviation of split frequencies: 0.009491
211000 -- (-994.085) (-990.330) [-981.862] (-1000.088) * (-987.992) (-993.198) (-992.328) [-986.044] -- 0:08:17
212000 -- (-992.525) [-984.714] (-990.786) (-997.647) * (-991.334) [-991.819] (-989.024) (-1010.198) -- 0:08:18
213000 -- (-984.429) (-985.870) [-984.745] (-993.209) * [-991.285] (-1003.803) (-992.231) (-1002.813) -- 0:08:15
214000 -- [-980.323] (-1004.292) (-996.289) (-995.298) * (-982.649) (-996.450) [-977.829] (-1003.642) -- 0:08:15
215000 -- (-1004.758) [-992.938] (-990.271) (-987.177) * (-1002.029) [-984.268] (-983.986) (-1000.014) -- 0:08:16
Average standard deviation of split frequencies: 0.009275
216000 -- (-981.446) (-989.254) (-1001.631) [-981.892] * (-987.741) (-1003.056) (-997.264) [-998.123] -- 0:08:13
217000 -- [-980.315] (-1002.818) (-996.726) (-984.036) * (-987.030) (-990.529) [-978.321] (-995.701) -- 0:08:14
218000 -- (-999.520) (-987.565) (-982.295) [-979.698] * (-985.798) (-1003.229) (-982.219) [-986.787] -- 0:08:15
219000 -- (-996.904) [-990.415] (-995.344) (-991.955) * (-994.466) (-999.785) [-987.877] (-999.761) -- 0:08:12
220000 -- (-995.117) [-983.959] (-1000.315) (-985.181) * (-999.102) (-999.425) [-982.631] (-994.103) -- 0:08:12
Average standard deviation of split frequencies: 0.009842
221000 -- (-998.039) (-1002.268) [-980.411] (-998.722) * (-1003.389) (-992.586) (-989.401) [-979.109] -- 0:08:09
222000 -- (-999.029) [-985.688] (-993.367) (-995.310) * (-994.619) [-995.168] (-991.110) (-992.636) -- 0:08:10
223000 -- (-999.520) [-985.222] (-982.185) (-999.882) * [-978.284] (-997.031) (-991.199) (-992.542) -- 0:08:11
224000 -- (-993.509) (-997.166) (-989.674) [-986.843] * (-980.415) [-990.868] (-991.822) (-992.539) -- 0:08:08
225000 -- (-988.507) (-990.549) (-1002.472) [-991.301] * [-983.297] (-994.107) (-999.249) (-997.025) -- 0:08:09
Average standard deviation of split frequencies: 0.009610
226000 -- [-998.623] (-1006.282) (-990.134) (-986.644) * (-982.893) [-986.207] (-996.148) (-999.278) -- 0:08:09
227000 -- (-992.716) (-989.339) (-986.287) [-984.389] * [-999.242] (-990.467) (-1000.370) (-988.972) -- 0:08:06
228000 -- (-986.070) [-980.789] (-990.012) (-984.048) * (-991.488) [-984.398] (-985.030) (-989.470) -- 0:08:07
229000 -- (-988.902) [-992.475] (-986.475) (-1000.361) * (-1005.907) (-993.353) (-984.239) [-986.979] -- 0:08:04
230000 -- (-987.544) [-986.850] (-997.870) (-997.749) * (-998.112) (-1013.196) (-995.490) [-971.965] -- 0:08:05
Average standard deviation of split frequencies: 0.009780
231000 -- (-986.432) (-989.894) [-992.703] (-990.564) * (-989.435) [-989.130] (-999.937) (-981.350) -- 0:08:06
232000 -- (-995.657) [-979.883] (-990.250) (-1009.334) * (-998.490) (-981.590) (-990.245) [-995.721] -- 0:08:03
233000 -- [-980.636] (-1001.772) (-989.135) (-999.772) * (-999.343) [-980.241] (-997.753) (-990.626) -- 0:08:03
234000 -- [-992.197] (-1001.897) (-998.526) (-995.261) * (-998.113) [-988.980] (-991.331) (-985.151) -- 0:08:04
235000 -- (-989.952) (-996.051) [-986.477] (-1005.554) * [-976.524] (-1002.252) (-992.697) (-988.760) -- 0:08:01
Average standard deviation of split frequencies: 0.009131
236000 -- (-994.591) [-1001.728] (-994.564) (-1001.522) * [-982.725] (-997.687) (-995.085) (-1000.203) -- 0:08:02
237000 -- (-990.218) (-1010.924) [-982.612] (-1008.634) * (-995.653) (-987.827) (-995.293) [-984.355] -- 0:07:59
238000 -- (-983.501) (-1000.671) [-976.260] (-984.018) * (-992.604) (-988.754) (-995.160) [-984.780] -- 0:08:00
239000 -- (-996.454) (-982.157) [-984.519] (-990.596) * (-1009.638) (-994.263) [-988.146] (-983.300) -- 0:08:00
240000 -- (-991.227) (-994.370) (-982.959) [-987.271] * [-1002.080] (-989.313) (-992.403) (-987.598) -- 0:07:58
Average standard deviation of split frequencies: 0.009253
241000 -- [-986.168] (-981.745) (-994.378) (-999.845) * (-1006.436) [-983.359] (-987.016) (-975.646) -- 0:07:58
242000 -- (-975.981) (-1002.124) (-992.510) [-987.374] * (-999.115) (-986.847) [-986.746] (-999.391) -- 0:07:59
243000 -- (-995.497) [-992.959] (-993.124) (-988.811) * (-1004.866) [-984.048] (-990.731) (-993.444) -- 0:07:56
244000 -- (-998.498) [-986.812] (-997.914) (-990.539) * (-1005.921) (-990.808) [-993.156] (-989.471) -- 0:07:57
245000 -- (-988.717) [-982.107] (-1000.660) (-989.481) * (-1001.900) (-994.440) [-990.195] (-993.972) -- 0:07:54
Average standard deviation of split frequencies: 0.009647
246000 -- [-988.013] (-998.576) (-1008.346) (-987.946) * (-996.584) [-983.036] (-987.424) (-1001.855) -- 0:07:55
247000 -- (-985.101) (-994.004) (-987.263) [-991.864] * (-996.451) (-983.853) [-997.536] (-990.833) -- 0:07:55
248000 -- (-982.052) (-1006.089) [-986.754] (-986.847) * [-982.507] (-994.470) (-1014.326) (-984.745) -- 0:07:53
249000 -- (-992.634) (-995.272) (-988.005) [-991.966] * (-988.898) [-984.238] (-996.660) (-984.679) -- 0:07:53
250000 -- [-995.303] (-999.183) (-1004.153) (-996.697) * (-998.786) (-983.499) [-977.286] (-999.147) -- 0:07:54
Average standard deviation of split frequencies: 0.010075
251000 -- (-993.283) [-984.708] (-1016.353) (-991.014) * (-989.287) [-974.981] (-986.942) (-1003.310) -- 0:07:51
252000 -- [-996.854] (-982.661) (-1015.137) (-980.080) * (-981.414) [-990.777] (-998.375) (-990.501) -- 0:07:51
253000 -- (-990.758) (-1001.989) [-987.692] (-988.959) * [-986.194] (-991.609) (-988.786) (-991.207) -- 0:07:52
254000 -- (-988.481) (-1009.001) (-992.515) [-993.839] * [-1004.703] (-982.627) (-993.320) (-989.411) -- 0:07:49
255000 -- (-999.111) [-981.329] (-987.602) (-1004.736) * (-999.199) [-986.384] (-1000.957) (-982.673) -- 0:07:50
Average standard deviation of split frequencies: 0.009842
256000 -- (-987.281) (-991.033) (-994.658) [-974.145] * (-988.311) (-1007.877) (-994.563) [-984.269] -- 0:07:50
257000 -- (-986.235) (-1000.127) (-997.714) [-988.176] * (-989.451) (-995.244) (-999.398) [-977.181] -- 0:07:48
258000 -- (-1003.080) [-997.767] (-992.953) (-990.581) * [-982.346] (-996.481) (-985.575) (-985.607) -- 0:07:48
259000 -- (-1008.068) (-995.474) (-987.875) [-990.446] * [-983.237] (-998.192) (-1005.824) (-981.204) -- 0:07:46
260000 -- (-991.575) [-988.284] (-996.873) (-991.983) * [-996.720] (-985.558) (-998.411) (-993.874) -- 0:07:46
Average standard deviation of split frequencies: 0.009853
261000 -- (-981.358) (-1001.806) (-988.659) [-975.666] * (-1000.539) (-992.074) [-994.357] (-993.227) -- 0:07:47
262000 -- (-980.234) (-994.482) [-988.220] (-991.179) * (-986.151) (-986.281) (-1002.431) [-981.276] -- 0:07:44
263000 -- (-988.653) (-982.073) [-985.886] (-1004.021) * (-977.083) [-983.573] (-987.544) (-993.552) -- 0:07:45
264000 -- (-976.275) (-1003.719) (-994.526) [-988.547] * [-990.829] (-994.522) (-1003.162) (-978.855) -- 0:07:42
265000 -- [-981.368] (-990.187) (-994.015) (-1006.924) * (-1000.401) (-998.112) (-986.234) [-996.291] -- 0:07:43
Average standard deviation of split frequencies: 0.010878
266000 -- [-995.429] (-989.788) (-995.106) (-999.099) * (-988.354) (-1004.054) (-984.313) [-984.955] -- 0:07:43
267000 -- (-995.410) (-992.326) [-998.214] (-1000.559) * (-988.130) (-983.733) (-985.627) [-985.655] -- 0:07:41
268000 -- (-985.438) [-994.864] (-1001.425) (-996.597) * (-1009.472) [-985.808] (-998.026) (-985.201) -- 0:07:41
269000 -- (-984.904) (-990.037) [-983.999] (-980.892) * (-1007.121) (-986.954) [-991.760] (-999.496) -- 0:07:41
270000 -- (-994.202) [-979.804] (-978.959) (-986.988) * (-1000.404) (-988.936) [-992.020] (-998.381) -- 0:07:39
Average standard deviation of split frequencies: 0.011531
271000 -- (-999.304) (-989.238) (-998.234) [-990.927] * (-996.166) (-989.982) (-990.892) [-986.163] -- 0:07:39
272000 -- (-1002.968) (-989.019) [-987.967] (-996.928) * (-995.458) (-993.367) (-1015.539) [-990.578] -- 0:07:37
273000 -- (-1006.289) [-983.430] (-1001.511) (-993.827) * (-991.704) (-1001.987) [-986.610] (-991.387) -- 0:07:38
274000 -- (-1006.470) [-988.764] (-988.601) (-1000.126) * [-988.089] (-995.016) (-987.698) (-986.375) -- 0:07:38
275000 -- (-981.234) (-995.745) (-986.429) [-984.004] * (-996.678) [-980.857] (-1000.541) (-986.474) -- 0:07:36
Average standard deviation of split frequencies: 0.011720
276000 -- (-998.877) [-984.267] (-995.560) (-982.577) * [-987.978] (-995.456) (-1003.188) (-983.432) -- 0:07:36
277000 -- (-986.270) (-990.078) [-984.782] (-997.176) * (-997.297) (-991.363) (-992.619) [-986.648] -- 0:07:36
278000 -- (-980.535) (-993.196) [-993.522] (-989.591) * (-994.784) (-1003.876) (-993.594) [-985.721] -- 0:07:34
279000 -- [-974.923] (-986.287) (-1010.620) (-994.135) * (-990.043) (-987.867) (-995.566) [-986.865] -- 0:07:34
280000 -- [-990.455] (-989.964) (-982.961) (-999.958) * (-1003.276) (-986.553) [-987.201] (-992.025) -- 0:07:32
Average standard deviation of split frequencies: 0.012336
281000 -- (-999.284) (-999.301) (-984.432) [-985.862] * (-991.047) [-992.339] (-986.777) (-991.774) -- 0:07:32
282000 -- (-985.898) (-993.493) (-998.835) [-977.254] * (-983.643) [-977.842] (-989.435) (-995.699) -- 0:07:33
283000 -- (-986.512) [-992.028] (-1008.744) (-989.240) * (-994.521) (-1004.355) [-997.053] (-997.819) -- 0:07:30
284000 -- (-1008.847) (-987.249) (-991.259) [-992.600] * (-992.314) (-998.634) [-996.130] (-989.979) -- 0:07:31
285000 -- (-997.260) [-986.109] (-994.859) (-989.781) * (-982.786) (-997.599) [-991.950] (-985.928) -- 0:07:31
Average standard deviation of split frequencies: 0.012637
286000 -- [-983.520] (-987.809) (-1003.834) (-994.520) * (-986.888) [-985.088] (-978.910) (-992.113) -- 0:07:29
287000 -- [-992.075] (-999.803) (-1014.537) (-992.088) * (-985.853) [-973.180] (-982.029) (-995.293) -- 0:07:29
288000 -- (-983.488) (-988.890) [-993.142] (-991.650) * [-981.812] (-991.586) (-986.962) (-1005.455) -- 0:07:27
289000 -- (-989.302) (-980.883) [-977.011] (-990.980) * (-987.820) (-994.561) [-981.511] (-1008.921) -- 0:07:27
290000 -- [-995.469] (-1005.748) (-984.355) (-995.511) * (-992.089) (-983.353) [-987.032] (-999.919) -- 0:07:28
Average standard deviation of split frequencies: 0.012434
291000 -- (-1007.788) (-992.863) [-986.883] (-997.924) * (-985.746) (-1005.659) (-984.711) [-986.721] -- 0:07:25
292000 -- (-997.666) (-1002.290) [-977.251] (-987.677) * (-992.679) (-1000.350) [-988.513] (-990.464) -- 0:07:26
293000 -- (-993.500) [-993.262] (-988.123) (-992.380) * (-980.861) (-1001.294) (-985.273) [-985.450] -- 0:07:23
294000 -- (-1004.912) (-1001.210) [-976.209] (-992.469) * (-988.456) (-998.644) [-984.814] (-993.886) -- 0:07:24
295000 -- [-993.147] (-997.149) (-985.084) (-994.810) * (-989.407) (-1005.979) [-990.319] (-989.813) -- 0:07:24
Average standard deviation of split frequencies: 0.012369
296000 -- (-998.908) [-997.964] (-989.587) (-992.012) * (-986.611) (-997.373) [-989.276] (-1004.140) -- 0:07:22
297000 -- (-998.073) [-991.775] (-983.110) (-988.442) * (-989.066) (-994.916) [-988.754] (-990.087) -- 0:07:22
298000 -- (-996.228) (-986.058) [-989.408] (-1000.453) * (-998.107) (-991.797) (-990.681) [-982.724] -- 0:07:22
299000 -- (-992.325) [-987.467] (-997.479) (-990.975) * (-996.016) [-992.862] (-998.499) (-989.503) -- 0:07:20
300000 -- (-1008.733) (-990.085) (-988.290) [-983.219] * (-1002.906) [-982.992] (-988.468) (-991.657) -- 0:07:21
Average standard deviation of split frequencies: 0.012020
301000 -- [-991.992] (-1017.473) (-989.589) (-987.651) * (-997.773) (-992.384) (-988.516) [-990.411] -- 0:07:18
302000 -- (-1002.994) (-1000.573) [-977.135] (-976.790) * (-990.264) (-996.051) (-1007.489) [-983.158] -- 0:07:19
303000 -- [-986.823] (-991.620) (-987.528) (-983.835) * (-987.720) [-989.811] (-1011.145) (-997.770) -- 0:07:19
304000 -- (-997.649) [-983.504] (-985.530) (-990.379) * (-989.308) [-982.942] (-1003.119) (-987.773) -- 0:07:17
305000 -- (-1003.287) (-982.964) (-989.503) [-991.025] * (-996.579) (-987.631) [-984.099] (-988.486) -- 0:07:17
Average standard deviation of split frequencies: 0.011605
306000 -- (-989.629) (-994.080) [-1006.798] (-994.431) * [-979.133] (-978.925) (-1001.349) (-988.218) -- 0:07:17
307000 -- (-987.445) (-985.349) [-995.231] (-1001.556) * [-992.701] (-989.519) (-1005.824) (-995.732) -- 0:07:15
308000 -- (-999.051) (-988.533) (-994.768) [-980.620] * (-982.665) (-998.982) [-987.945] (-996.583) -- 0:07:15
309000 -- [-988.342] (-994.109) (-985.437) (-990.052) * (-983.468) [-986.275] (-988.284) (-996.812) -- 0:07:13
310000 -- [-984.572] (-985.498) (-997.338) (-997.930) * (-991.106) (-996.740) (-994.435) [-987.993] -- 0:07:14
Average standard deviation of split frequencies: 0.011431
311000 -- (-995.706) [-986.254] (-1001.964) (-1002.007) * [-983.323] (-980.900) (-997.381) (-996.223) -- 0:07:14
312000 -- (-987.418) (-983.914) [-989.809] (-978.787) * [-988.866] (-1004.834) (-989.631) (-1007.039) -- 0:07:12
313000 -- (-996.245) [-982.804] (-989.480) (-985.535) * (-989.311) (-989.829) [-989.898] (-996.620) -- 0:07:12
314000 -- [-981.303] (-992.364) (-986.919) (-988.479) * (-984.136) (-995.355) [-982.559] (-997.077) -- 0:07:10
315000 -- (-1008.777) [-987.547] (-997.496) (-990.017) * [-974.204] (-1004.561) (-976.290) (-983.284) -- 0:07:10
Average standard deviation of split frequencies: 0.011536
316000 -- (-991.124) (-991.467) [-983.673] (-987.783) * (-995.037) [-983.595] (-1009.950) (-985.161) -- 0:07:10
317000 -- [-983.544] (-1001.334) (-994.658) (-988.550) * (-983.976) (-987.177) (-983.278) [-981.952] -- 0:07:08
318000 -- [-987.941] (-1000.403) (-993.359) (-1000.545) * (-987.159) [-996.831] (-996.058) (-988.245) -- 0:07:08
319000 -- (-988.623) (-995.471) (-995.050) [-988.428] * (-1000.281) (-985.383) [-987.329] (-1004.320) -- 0:07:06
320000 -- [-991.180] (-995.571) (-988.129) (-992.778) * (-989.720) [-975.484] (-989.810) (-1000.136) -- 0:07:07
Average standard deviation of split frequencies: 0.011222
321000 -- (-994.376) (-994.467) [-984.582] (-989.759) * [-981.681] (-986.669) (-987.096) (-998.972) -- 0:07:07
322000 -- (-998.091) [-980.092] (-999.104) (-986.223) * [-988.745] (-983.851) (-997.637) (-991.048) -- 0:07:05
323000 -- [-980.551] (-989.178) (-994.288) (-994.535) * (-991.930) [-980.985] (-1003.421) (-995.687) -- 0:07:05
324000 -- (-1015.279) (-996.113) [-982.858] (-1006.471) * (-992.622) [-992.000] (-1003.152) (-981.644) -- 0:07:05
325000 -- (-989.762) [-982.819] (-993.269) (-984.391) * (-1003.803) (-986.797) (-997.159) [-984.237] -- 0:07:03
Average standard deviation of split frequencies: 0.011279
326000 -- (-1005.602) (-986.520) [-987.252] (-993.718) * (-991.727) (-992.838) [-983.505] (-993.104) -- 0:07:03
327000 -- (-995.756) (-1002.589) [-984.555] (-988.879) * (-994.267) (-994.801) (-998.247) [-990.869] -- 0:07:01
328000 -- (-990.156) (-1000.691) (-1003.662) [-981.670] * [-995.512] (-993.583) (-998.103) (-995.298) -- 0:07:02
329000 -- (-982.048) (-980.746) [-984.043] (-986.574) * (-990.147) (-985.878) (-985.423) [-987.434] -- 0:07:02
330000 -- (-993.855) (-986.983) [-990.465] (-986.700) * (-976.319) (-1001.951) (-994.422) [-985.057] -- 0:07:00
Average standard deviation of split frequencies: 0.011643
331000 -- (-985.424) [-980.898] (-990.675) (-997.476) * (-1003.713) [-989.942] (-1005.951) (-993.176) -- 0:07:00
332000 -- (-998.086) [-988.011] (-997.624) (-1002.931) * (-991.515) (-989.947) (-995.520) [-996.093] -- 0:06:58
333000 -- (-992.615) (-993.343) (-1007.714) [-990.276] * [-987.695] (-989.729) (-998.360) (-991.826) -- 0:06:58
334000 -- (-994.508) (-1007.191) [-994.610] (-992.435) * (-1013.913) (-1005.933) (-990.440) [-999.158] -- 0:06:58
335000 -- (-1013.478) (-990.406) [-984.403] (-989.123) * (-997.091) (-995.506) [-984.695] (-993.339) -- 0:06:56
Average standard deviation of split frequencies: 0.011037
336000 -- (-1001.987) (-991.305) (-987.573) [-988.435] * (-996.343) (-984.021) [-987.216] (-994.721) -- 0:06:56
337000 -- (-988.537) (-991.066) (-998.848) [-978.438] * (-1000.352) (-1006.396) (-987.540) [-986.758] -- 0:06:57
338000 -- (-1000.503) [-985.489] (-979.161) (-993.259) * (-998.404) (-991.256) [-986.019] (-977.754) -- 0:06:55
339000 -- (-990.465) (-995.064) (-1001.076) [-983.830] * (-982.604) (-978.726) [-988.474] (-977.860) -- 0:06:55
340000 -- (-987.532) (-990.386) [-989.886] (-982.285) * (-993.399) (-990.817) (-986.424) [-989.330] -- 0:06:53
Average standard deviation of split frequencies: 0.010655
341000 -- (-1005.521) (-992.860) (-990.919) [-986.143] * [-983.784] (-1001.617) (-992.604) (-994.524) -- 0:06:53
342000 -- (-998.080) (-985.668) (-999.296) [-980.226] * [-987.115] (-1006.891) (-983.550) (-990.711) -- 0:06:53
343000 -- (-990.161) [-981.061] (-979.930) (-990.676) * [-976.203] (-1002.860) (-997.360) (-981.113) -- 0:06:51
344000 -- (-992.575) [-996.252] (-1001.746) (-1002.944) * [-987.334] (-1010.799) (-1000.922) (-983.095) -- 0:06:51
345000 -- (-1004.143) (-990.491) (-1006.214) [-986.002] * [-985.190] (-1004.489) (-1000.084) (-977.791) -- 0:06:51
Average standard deviation of split frequencies: 0.010400
346000 -- (-989.439) (-1002.360) (-1009.555) [-983.253] * (-987.555) [-987.977] (-1008.095) (-1000.044) -- 0:06:50
347000 -- [-991.313] (-987.716) (-1000.890) (-985.032) * [-986.369] (-980.208) (-992.969) (-996.361) -- 0:06:50
348000 -- (-989.682) (-1002.658) (-994.518) [-989.670] * (-983.406) (-989.654) [-984.074] (-992.760) -- 0:06:50
349000 -- [-982.883] (-992.904) (-994.192) (-985.626) * [-986.554] (-990.812) (-995.454) (-1003.953) -- 0:06:48
350000 -- (-976.170) [-992.715] (-997.010) (-997.650) * (-993.174) (-984.510) [-985.695] (-989.907) -- 0:06:48
Average standard deviation of split frequencies: 0.010127
351000 -- [-987.585] (-987.451) (-999.884) (-987.258) * (-999.619) (-991.778) [-1001.300] (-997.877) -- 0:06:46
352000 -- [-992.444] (-995.581) (-984.426) (-990.068) * (-992.175) (-987.639) [-989.118] (-997.715) -- 0:06:46
353000 -- (-992.735) [-987.037] (-991.172) (-995.355) * (-991.402) (-1006.664) [-983.017] (-994.570) -- 0:06:46
354000 -- (-985.091) [-982.164] (-1017.591) (-1009.632) * (-979.564) (-1007.417) (-999.379) [-990.304] -- 0:06:45
355000 -- [-989.086] (-987.228) (-990.427) (-999.594) * (-988.942) [-978.833] (-990.229) (-984.538) -- 0:06:45
Average standard deviation of split frequencies: 0.009843
356000 -- (-991.479) [-983.913] (-988.775) (-992.109) * (-981.206) (-992.986) [-984.523] (-999.143) -- 0:06:45
357000 -- [-987.014] (-1008.413) (-999.319) (-996.389) * (-996.208) (-987.895) [-1001.006] (-983.949) -- 0:06:43
358000 -- (-1006.825) [-998.314] (-993.232) (-991.775) * (-999.850) [-988.642] (-1004.838) (-989.663) -- 0:06:43
359000 -- (-992.447) [-985.940] (-1005.212) (-988.476) * (-999.051) (-991.741) (-985.562) [-992.127] -- 0:06:43
360000 -- (-991.821) (-1002.077) (-994.463) [-980.534] * (-998.413) (-999.561) (-992.515) [-981.607] -- 0:06:41
Average standard deviation of split frequencies: 0.009629
361000 -- (-1023.272) (-1000.139) [-982.471] (-990.310) * (-987.655) (-1002.260) [-987.758] (-992.386) -- 0:06:41
362000 -- (-1004.249) (-978.071) (-992.208) [-988.363] * (-992.795) (-1006.392) (-1009.703) [-980.755] -- 0:06:41
363000 -- (-990.411) (-990.535) (-994.747) [-983.337] * (-994.068) (-1004.377) [-991.729] (-996.606) -- 0:06:40
364000 -- [-979.104] (-992.805) (-1004.346) (-982.255) * (-990.819) (-995.035) [-990.536] (-979.613) -- 0:06:40
365000 -- (-969.642) (-999.265) [-991.919] (-988.474) * (-980.777) [-981.969] (-997.671) (-991.620) -- 0:06:38
Average standard deviation of split frequencies: 0.009531
366000 -- (-987.587) (-985.174) (-999.079) [-984.014] * [-984.423] (-991.647) (-992.047) (-983.950) -- 0:06:38
367000 -- (-986.731) (-996.179) [-985.317] (-984.854) * [-988.708] (-985.307) (-983.452) (-988.020) -- 0:06:38
368000 -- (-987.776) (-982.501) [-976.366] (-1000.282) * (-1002.069) (-998.104) (-984.700) [-992.032] -- 0:06:36
369000 -- (-985.423) (-988.575) [-989.950] (-991.879) * (-991.705) [-980.307] (-1004.517) (-988.250) -- 0:06:36
370000 -- (-1007.101) (-983.890) [-990.400] (-988.294) * (-998.723) (-1011.123) (-1004.748) [-990.799] -- 0:06:36
Average standard deviation of split frequencies: 0.009454
371000 -- [-991.355] (-994.702) (-986.586) (-1009.628) * (-985.388) (-1005.335) [-981.288] (-992.669) -- 0:06:35
372000 -- [-986.108] (-987.428) (-985.017) (-1000.455) * (-986.915) (-991.385) (-1006.726) [-986.538] -- 0:06:35
373000 -- (-984.709) (-1004.349) (-988.097) [-986.946] * (-1001.050) (-998.689) [-987.481] (-989.310) -- 0:06:35
374000 -- [-992.661] (-999.571) (-984.567) (-991.310) * (-979.132) (-990.526) (-994.491) [-983.217] -- 0:06:35
375000 -- (-997.835) (-983.883) [-977.545] (-989.781) * [-979.867] (-996.205) (-994.775) (-992.874) -- 0:06:33
Average standard deviation of split frequencies: 0.009779
376000 -- (-1010.535) (-988.921) (-984.175) [-990.433] * (-996.746) (-1001.040) [-987.648] (-1004.401) -- 0:06:33
377000 -- (-995.917) (-1005.208) [-978.163] (-993.517) * (-989.804) (-998.061) [-979.500] (-993.935) -- 0:06:33
378000 -- [-985.909] (-1005.542) (-995.782) (-983.231) * [-999.282] (-991.684) (-989.059) (-987.813) -- 0:06:31
379000 -- (-988.305) (-986.045) [-987.818] (-1006.580) * (-982.742) [-989.727] (-984.086) (-982.893) -- 0:06:31
380000 -- (-990.735) [-995.444] (-988.200) (-998.634) * [-987.733] (-989.311) (-1001.290) (-985.655) -- 0:06:31
Average standard deviation of split frequencies: 0.009412
381000 -- (-993.834) (-1000.442) [-993.456] (-988.490) * (-990.968) [-987.904] (-993.959) (-987.732) -- 0:06:29
382000 -- (-990.093) (-997.601) (-996.918) [-986.322] * (-984.695) [-992.626] (-1000.337) (-986.243) -- 0:06:29
383000 -- (-996.073) [-993.019] (-985.940) (-1000.504) * (-993.216) (-996.543) (-999.195) [-993.696] -- 0:06:28
384000 -- (-995.649) (-991.522) [-991.455] (-993.933) * [-985.812] (-996.777) (-994.640) (-1000.424) -- 0:06:28
385000 -- [-995.426] (-1006.454) (-1006.829) (-1000.529) * (-986.436) [-982.538] (-1000.857) (-986.969) -- 0:06:28
Average standard deviation of split frequencies: 0.009282
386000 -- (-993.032) (-1003.341) (-990.905) [-979.277] * (-992.436) [-985.094] (-1001.364) (-986.935) -- 0:06:26
387000 -- (-1002.984) [-987.679] (-992.618) (-991.823) * (-998.609) (-998.375) (-982.170) [-982.005] -- 0:06:26
388000 -- (-988.384) (-991.010) [-987.807] (-982.927) * (-998.833) (-987.402) (-988.489) [-987.847] -- 0:06:26
389000 -- (-989.832) (-987.587) [-982.754] (-987.536) * (-986.957) (-984.393) (-983.141) [-984.545] -- 0:06:24
390000 -- (-989.632) (-990.869) (-989.889) [-990.851] * (-991.958) (-1003.499) (-989.725) [-975.068] -- 0:06:24
Average standard deviation of split frequencies: 0.009171
391000 -- (-999.531) (-985.800) [-983.822] (-984.663) * (-980.692) (-998.081) [-993.656] (-1009.850) -- 0:06:24
392000 -- (-993.952) (-984.171) (-1006.351) [-994.033] * [-988.920] (-983.401) (-1001.457) (-989.135) -- 0:06:23
393000 -- [-981.231] (-996.922) (-990.870) (-985.845) * (-985.287) [-987.591] (-993.752) (-992.460) -- 0:06:23
394000 -- (-984.603) (-986.139) [-982.374] (-984.000) * (-989.812) (-1003.975) [-978.725] (-990.571) -- 0:06:22
395000 -- (-995.000) [-988.310] (-998.390) (-990.797) * (-988.999) [-989.042] (-983.154) (-984.080) -- 0:06:21
Average standard deviation of split frequencies: 0.008928
396000 -- [-987.201] (-994.144) (-981.198) (-984.861) * (-1007.601) (-981.729) [-973.064] (-970.338) -- 0:06:21
397000 -- [-992.665] (-999.930) (-1013.649) (-983.152) * (-990.861) (-991.080) (-1001.146) [-986.447] -- 0:06:19
398000 -- [-985.230] (-1008.383) (-983.444) (-1007.703) * (-987.453) [-987.194] (-993.959) (-997.680) -- 0:06:19
399000 -- (-992.449) (-997.646) (-983.321) [-984.834] * (-982.356) (-987.502) [-990.820] (-995.659) -- 0:06:19
400000 -- (-994.667) [-983.326] (-994.618) (-997.947) * [-972.822] (-993.181) (-989.221) (-989.026) -- 0:06:18
Average standard deviation of split frequencies: 0.009177
401000 -- (-999.859) [-994.289] (-990.440) (-983.596) * (-985.182) [-989.490] (-1009.917) (-990.680) -- 0:06:17
402000 -- (-1002.378) [-987.351] (-993.372) (-982.838) * (-995.834) (-990.282) (-1000.844) [-980.922] -- 0:06:17
403000 -- (-986.210) [-987.768] (-993.058) (-1004.073) * (-974.131) (-988.681) (-998.033) [-975.451] -- 0:06:16
404000 -- (-996.123) (-985.534) [-989.333] (-992.874) * (-982.431) (-996.895) (-986.639) [-988.542] -- 0:06:16
405000 -- [-980.406] (-988.515) (-1003.566) (-1003.143) * (-990.434) (-990.122) (-994.114) [-986.022] -- 0:06:14
Average standard deviation of split frequencies: 0.008553
406000 -- [-988.988] (-994.010) (-993.315) (-999.166) * (-991.039) (-1020.571) [-981.470] (-995.213) -- 0:06:14
407000 -- (-994.516) [-982.443] (-992.087) (-1013.925) * (-994.126) [-979.356] (-1008.510) (-984.289) -- 0:06:14
408000 -- (-996.651) [-984.172] (-1004.828) (-986.332) * (-999.885) (-998.866) [-983.019] (-986.487) -- 0:06:12
409000 -- [-993.366] (-986.782) (-989.431) (-986.913) * [-987.536] (-994.484) (-983.087) (-992.354) -- 0:06:12
410000 -- [-990.483] (-991.338) (-992.599) (-987.583) * (-985.832) (-1008.705) [-989.985] (-992.781) -- 0:06:12
Average standard deviation of split frequencies: 0.007959
411000 -- (-995.610) (-991.870) [-978.958] (-997.742) * [-991.147] (-995.014) (-989.076) (-991.695) -- 0:06:11
412000 -- (-993.168) (-995.107) [-980.232] (-995.001) * (-1002.721) [-975.848] (-993.366) (-981.874) -- 0:06:11
413000 -- (-989.587) (-988.466) (-996.807) [-979.392] * (-1003.636) (-1006.136) [-987.888] (-983.857) -- 0:06:09
414000 -- (-1000.786) [-990.442] (-1003.184) (-989.068) * (-984.849) (-1004.982) [-992.107] (-982.023) -- 0:06:09
415000 -- [-989.713] (-995.849) (-981.742) (-988.091) * (-1004.679) [-980.868] (-1012.275) (-986.164) -- 0:06:09
Average standard deviation of split frequencies: 0.008537
416000 -- (-985.200) (-994.640) [-983.256] (-996.585) * (-992.286) [-984.756] (-999.844) (-1006.449) -- 0:06:07
417000 -- (-987.370) [-982.063] (-995.446) (-982.028) * [-987.092] (-981.623) (-996.088) (-989.831) -- 0:06:07
418000 -- (-1000.788) (-985.885) [-988.807] (-1003.693) * (-990.179) [-988.512] (-992.875) (-986.561) -- 0:06:07
419000 -- (-995.683) (-987.125) (-999.207) [-981.319] * (-993.875) [-982.854] (-996.815) (-989.150) -- 0:06:06
420000 -- (-1007.192) (-1003.275) (-1000.692) [-982.022] * (-989.906) [-985.496] (-1001.063) (-981.695) -- 0:06:05
Average standard deviation of split frequencies: 0.008928
421000 -- (-990.008) [-981.737] (-1001.352) (-1003.388) * (-989.867) (-987.877) [-978.342] (-989.532) -- 0:06:04
422000 -- (-1009.145) (-1001.618) (-1001.405) [-997.093] * [-995.924] (-1002.724) (-985.871) (-992.915) -- 0:06:04
423000 -- (-1001.461) (-983.664) [-991.630] (-996.569) * (-1006.569) (-996.959) (-992.391) [-985.035] -- 0:06:04
424000 -- [-984.771] (-993.273) (-1004.027) (-1004.755) * (-989.714) [-977.944] (-995.249) (-990.914) -- 0:06:02
425000 -- (-998.364) [-977.713] (-991.070) (-1006.070) * (-1008.293) (-993.131) (-983.227) [-992.625] -- 0:06:02
Average standard deviation of split frequencies: 0.009185
426000 -- (-985.905) (-994.371) (-1003.471) [-979.606] * (-984.079) [-996.348] (-981.168) (-996.430) -- 0:06:01
427000 -- (-986.519) [-985.477] (-999.247) (-984.510) * [-981.892] (-996.223) (-999.490) (-997.268) -- 0:06:00
428000 -- (-989.682) (-993.559) (-1000.399) [-983.419] * (-989.998) [-985.562] (-997.870) (-988.872) -- 0:06:00
429000 -- (-982.854) [-985.405] (-1025.766) (-990.890) * (-1005.552) (-989.534) (-994.497) [-985.136] -- 0:05:59
430000 -- [-984.654] (-1000.862) (-1009.476) (-988.675) * (-993.937) [-988.024] (-995.664) (-994.282) -- 0:05:59
Average standard deviation of split frequencies: 0.009377
431000 -- (-1003.537) [-980.330] (-1001.557) (-988.793) * [-978.758] (-996.932) (-986.151) (-993.082) -- 0:05:59
432000 -- [-990.173] (-984.687) (-1001.115) (-981.762) * (-996.994) (-992.998) (-1001.619) [-999.227] -- 0:05:57
433000 -- [-986.417] (-985.596) (-998.389) (-980.598) * (-984.619) [-981.304] (-982.455) (-1000.721) -- 0:05:57
434000 -- (-993.528) (-984.780) (-986.563) [-986.910] * [-986.134] (-982.182) (-1001.333) (-989.993) -- 0:05:56
435000 -- (-993.458) [-984.112] (-995.823) (-987.707) * (-994.211) [-995.675] (-985.446) (-995.578) -- 0:05:55
Average standard deviation of split frequencies: 0.009370
436000 -- (-980.364) [-990.667] (-984.105) (-990.440) * (-1006.017) (-1000.471) (-988.469) [-981.546] -- 0:05:55
437000 -- (-991.159) [-971.419] (-993.054) (-995.486) * (-991.437) (-983.226) (-991.308) [-997.811] -- 0:05:54
438000 -- (-997.863) (-985.892) (-993.736) [-982.031] * (-989.935) (-988.375) [-986.041] (-991.618) -- 0:05:54
439000 -- (-992.537) [-995.211] (-1005.982) (-988.718) * (-993.915) [-979.620] (-989.692) (-992.217) -- 0:05:53
440000 -- [-992.050] (-985.104) (-987.418) (-1002.304) * (-996.706) [-980.507] (-986.734) (-981.697) -- 0:05:52
Average standard deviation of split frequencies: 0.009521
441000 -- [-991.792] (-978.731) (-983.055) (-986.899) * [-987.327] (-990.126) (-994.514) (-993.596) -- 0:05:52
442000 -- (-990.100) (-978.366) [-984.489] (-991.406) * [-978.726] (-981.569) (-990.591) (-986.632) -- 0:05:52
443000 -- (-989.624) (-994.891) (-992.458) [-988.011] * [-985.147] (-990.838) (-1005.540) (-991.170) -- 0:05:50
444000 -- (-1010.421) (-983.155) (-987.396) [-986.226] * [-985.842] (-1006.356) (-1001.808) (-984.947) -- 0:05:50
445000 -- [-991.880] (-993.182) (-999.748) (-993.093) * (-991.111) (-1002.309) (-996.631) [-978.082] -- 0:05:50
Average standard deviation of split frequencies: 0.009618
446000 -- (-983.577) (-990.681) (-1000.885) [-983.864] * [-992.304] (-1006.066) (-1003.250) (-973.780) -- 0:05:49
447000 -- [-981.918] (-998.712) (-987.235) (-998.773) * (-1015.950) (-987.850) [-992.112] (-998.028) -- 0:05:48
448000 -- (-980.834) (-989.719) [-978.445] (-1000.019) * [-979.728] (-998.754) (-993.865) (-991.297) -- 0:05:48
449000 -- (-990.470) [-984.013] (-988.550) (-998.644) * (-997.175) (-983.630) [-987.433] (-996.622) -- 0:05:47
450000 -- (-998.256) [-992.896] (-989.186) (-988.320) * (-987.976) (-986.458) [-990.084] (-1007.817) -- 0:05:47
Average standard deviation of split frequencies: 0.009449
451000 -- (-989.394) (-992.974) [-983.829] (-995.634) * (-1009.623) [-992.749] (-998.881) (-993.062) -- 0:05:46
452000 -- (-981.827) (-999.572) [-980.469] (-993.161) * [-992.248] (-994.729) (-985.258) (-997.379) -- 0:05:45
453000 -- [-978.942] (-984.815) (-995.811) (-993.820) * [-985.887] (-994.087) (-987.163) (-1002.511) -- 0:05:45
454000 -- (-986.546) [-984.913] (-989.526) (-990.847) * (-992.352) [-987.155] (-995.613) (-990.086) -- 0:05:45
455000 -- (-999.826) (-986.006) [-993.239] (-987.851) * [-997.452] (-992.190) (-998.856) (-1001.423) -- 0:05:43
Average standard deviation of split frequencies: 0.009511
456000 -- (-993.623) (-990.273) (-974.892) [-986.377] * (-996.305) [-974.480] (-993.454) (-987.518) -- 0:05:43
457000 -- (-996.897) [-982.959] (-985.570) (-991.322) * (-990.689) (-996.386) (-983.822) [-982.601] -- 0:05:42
458000 -- (-1008.740) (-1000.075) [-985.427] (-988.645) * (-997.820) (-1003.393) (-994.061) [-985.698] -- 0:05:42
459000 -- (-992.069) [-979.293] (-989.451) (-994.333) * (-1001.330) (-1002.000) [-998.418] (-993.158) -- 0:05:41
460000 -- (-991.804) [-991.042] (-984.875) (-992.156) * (-996.859) (-1001.497) (-1004.749) [-985.710] -- 0:05:40
Average standard deviation of split frequencies: 0.009346
461000 -- (-991.461) (-996.799) [-983.316] (-1000.276) * (-1001.035) (-979.595) (-992.075) [-993.037] -- 0:05:40
462000 -- (-986.545) (-1005.211) (-992.196) [-986.233] * (-1004.698) [-986.993] (-990.567) (-995.751) -- 0:05:40
463000 -- (-994.991) [-992.577] (-995.927) (-1001.449) * (-992.026) (-1007.727) [-997.527] (-985.594) -- 0:05:38
464000 -- (-1001.262) (-1002.067) [-991.444] (-995.229) * (-985.330) [-986.956] (-992.978) (-991.759) -- 0:05:38
465000 -- (-1002.414) (-998.035) [-991.076] (-997.543) * (-981.235) (-994.185) [-988.816] (-986.841) -- 0:05:37
Average standard deviation of split frequencies: 0.009644
466000 -- (-1006.821) (-993.229) (-995.705) [-1002.672] * [-979.889] (-1002.611) (-990.293) (-991.013) -- 0:05:36
467000 -- (-1002.596) (-1002.036) [-991.149] (-986.591) * (-989.619) (-1010.751) [-990.550] (-983.407) -- 0:05:36
468000 -- (-999.037) (-985.013) [-988.708] (-1001.849) * (-989.705) (-995.470) [-991.126] (-1021.891) -- 0:05:35
469000 -- (-1009.186) (-978.903) (-1003.946) [-986.375] * [-990.741] (-1003.323) (-996.129) (-993.647) -- 0:05:35
470000 -- (-1012.243) (-989.897) [-985.929] (-996.344) * (-999.220) (-996.534) [-992.751] (-992.509) -- 0:05:34
Average standard deviation of split frequencies: 0.010016
471000 -- (-1013.129) [-986.768] (-993.584) (-998.656) * (-982.190) (-985.925) [-985.867] (-1000.583) -- 0:05:33
472000 -- (-996.793) (-986.857) (-993.894) [-985.244] * [-986.029] (-988.609) (-989.093) (-1000.231) -- 0:05:33
473000 -- (-995.305) [-993.068] (-985.632) (-983.835) * [-982.743] (-979.550) (-1006.910) (-1009.587) -- 0:05:32
474000 -- (-992.661) (-1009.845) [-988.553] (-980.350) * (-994.788) (-983.406) (-996.763) [-987.172] -- 0:05:31
475000 -- (-1002.971) (-990.055) (-985.413) [-983.241] * (-995.093) (-988.162) [-989.940] (-1003.131) -- 0:05:31
Average standard deviation of split frequencies: 0.009804
476000 -- (-1005.050) [-987.592] (-991.813) (-979.223) * (-996.627) [-979.392] (-986.377) (-997.617) -- 0:05:30
477000 -- [-993.918] (-991.846) (-1003.132) (-986.062) * (-996.378) (-987.726) (-985.174) [-988.622] -- 0:05:30
478000 -- (-993.544) (-990.306) (-984.318) [-979.219] * [-994.768] (-995.838) (-982.393) (-1005.255) -- 0:05:29
479000 -- (-991.020) [-986.005] (-982.665) (-994.956) * [-990.907] (-995.637) (-991.485) (-986.383) -- 0:05:28
480000 -- (-1006.337) (-985.075) [-979.064] (-988.208) * [-984.734] (-987.574) (-993.056) (-982.594) -- 0:05:28
Average standard deviation of split frequencies: 0.009677
481000 -- (-1015.699) (-990.558) [-989.538] (-994.065) * [-989.013] (-1009.362) (-984.613) (-995.203) -- 0:05:26
482000 -- (-996.352) (-992.924) [-978.364] (-984.507) * [-986.707] (-990.972) (-991.942) (-998.082) -- 0:05:26
483000 -- (-996.813) (-986.992) (-979.007) [-991.716] * (-985.786) (-1001.922) (-1005.268) [-989.432] -- 0:05:26
484000 -- (-1000.288) (-989.472) [-988.476] (-989.028) * [-986.435] (-985.137) (-991.213) (-1005.266) -- 0:05:25
485000 -- (-993.419) [-983.911] (-987.681) (-991.887) * [-983.622] (-1002.080) (-980.110) (-991.621) -- 0:05:24
Average standard deviation of split frequencies: 0.009894
486000 -- [-988.657] (-1002.479) (-1000.999) (-996.257) * (-988.443) (-987.949) [-987.006] (-1010.430) -- 0:05:24
487000 -- (-984.725) (-1001.461) (-1004.644) [-987.535] * (-993.380) (-989.104) [-984.027] (-986.303) -- 0:05:23
488000 -- (-997.013) (-991.216) (-1011.619) [-986.640] * (-988.149) (-997.161) [-983.854] (-997.795) -- 0:05:23
489000 -- (-993.818) (-987.559) (-994.637) [-984.669] * (-990.031) (-987.602) (-984.160) [-990.648] -- 0:05:21
490000 -- (-1001.722) (-990.607) (-1003.389) [-981.549] * (-1001.797) [-982.786] (-997.183) (-1006.892) -- 0:05:21
Average standard deviation of split frequencies: 0.009607
491000 -- (-982.373) [-984.026] (-978.604) (-1001.014) * (-977.041) (-1002.297) [-987.986] (-994.554) -- 0:05:21
492000 -- (-983.834) [-989.019] (-974.607) (-994.936) * (-984.241) (-1001.211) (-1003.239) [-984.649] -- 0:05:20
493000 -- (-1005.314) [-987.411] (-979.947) (-995.716) * (-988.085) [-994.616] (-1006.970) (-1001.182) -- 0:05:19
494000 -- (-1010.124) [-991.053] (-979.430) (-990.485) * [-985.988] (-992.552) (-980.584) (-1007.649) -- 0:05:19
495000 -- (-1006.680) [-985.022] (-984.107) (-983.946) * [-989.284] (-1007.335) (-988.860) (-1004.740) -- 0:05:18
Average standard deviation of split frequencies: 0.009853
496000 -- (-996.892) (-993.041) (-995.052) [-983.763] * (-1002.745) (-1008.581) (-986.122) [-984.167] -- 0:05:18
497000 -- (-1006.640) (-991.767) [-984.190] (-982.305) * (-991.064) [-979.646] (-996.770) (-996.545) -- 0:05:16
498000 -- (-1008.809) [-985.892] (-989.320) (-990.657) * (-997.171) [-987.099] (-991.307) (-995.566) -- 0:05:16
499000 -- [-993.786] (-991.788) (-990.755) (-992.041) * (-976.561) [-983.149] (-983.350) (-997.222) -- 0:05:16
500000 -- (-1018.635) (-997.643) (-989.331) [-987.720] * (-1008.013) (-976.605) [-979.165] (-994.941) -- 0:05:15
Average standard deviation of split frequencies: 0.009918
501000 -- [-984.727] (-987.286) (-984.965) (-991.313) * (-999.344) (-985.740) (-980.866) [-986.636] -- 0:05:14
502000 -- [-985.125] (-992.295) (-998.416) (-1007.360) * (-1001.889) (-989.515) [-987.713] (-1000.818) -- 0:05:14
503000 -- [-987.615] (-986.084) (-1004.520) (-1009.795) * (-986.852) (-984.110) (-985.403) [-981.450] -- 0:05:13
504000 -- (-999.027) (-999.790) (-997.232) [-990.416] * (-1004.729) (-990.996) [-992.890] (-991.216) -- 0:05:12
505000 -- (-992.332) (-984.687) (-1000.379) [-987.877] * (-1006.445) (-990.527) (-998.591) [-996.987] -- 0:05:11
Average standard deviation of split frequencies: 0.010186
506000 -- (-984.700) (-985.840) [-980.946] (-1008.709) * (-1004.812) (-988.738) (-1005.446) [-980.762] -- 0:05:11
507000 -- [-985.133] (-979.839) (-992.028) (-999.558) * (-998.057) (-1010.031) (-981.630) [-974.274] -- 0:05:11
508000 -- (-997.578) (-991.952) (-981.492) [-980.317] * (-989.483) (-991.797) [-984.705] (-988.670) -- 0:05:09
509000 -- (-994.069) (-1004.525) [-986.383] (-987.135) * [-981.926] (-995.070) (-994.787) (-988.545) -- 0:05:09
510000 -- (-987.170) [-990.617] (-1002.587) (-983.697) * (-985.334) (-1013.488) (-990.313) [-988.303] -- 0:05:09
Average standard deviation of split frequencies: 0.010124
511000 -- (-1002.419) (-994.438) (-996.693) [-984.037] * (-986.346) (-1005.932) (-1005.259) [-989.232] -- 0:05:08
512000 -- (-1005.918) [-995.163] (-993.101) (-996.301) * (-995.539) (-981.581) (-992.740) [-984.398] -- 0:05:07
513000 -- (-1000.749) (-989.200) (-993.703) [-988.660] * [-985.937] (-1007.271) (-996.577) (-996.217) -- 0:05:06
514000 -- [-988.819] (-1004.405) (-992.113) (-998.099) * [-984.230] (-991.612) (-997.159) (-977.427) -- 0:05:06
515000 -- (-997.128) [-987.832] (-1000.699) (-992.019) * (-977.468) (-1004.571) (-991.590) [-984.535] -- 0:05:06
Average standard deviation of split frequencies: 0.009775
516000 -- (-988.087) [-989.208] (-981.286) (-1002.033) * [-990.491] (-991.092) (-992.117) (-991.875) -- 0:05:04
517000 -- (-997.275) (-986.935) (-995.251) [-992.969] * [-987.089] (-985.863) (-991.741) (-984.300) -- 0:05:04
518000 -- (-999.652) [-988.532] (-980.592) (-988.051) * (-992.940) (-997.648) (-992.245) [-983.195] -- 0:05:04
519000 -- [-990.683] (-1013.728) (-986.278) (-1019.097) * (-983.290) (-980.545) (-989.016) [-983.018] -- 0:05:03
520000 -- (-1008.442) [-982.504] (-992.474) (-987.494) * (-990.723) [-977.904] (-999.763) (-998.488) -- 0:05:02
Average standard deviation of split frequencies: 0.009748
521000 -- (-986.329) (-997.534) [-992.147] (-990.056) * (-997.151) [-981.076] (-1000.729) (-984.674) -- 0:05:02
522000 -- (-990.080) (-996.310) [-992.477] (-998.918) * [-989.721] (-999.263) (-991.310) (-991.300) -- 0:05:01
523000 -- [-984.375] (-998.473) (-994.559) (-1008.172) * (-993.339) (-984.931) (-993.488) [-989.998] -- 0:05:00
524000 -- [-983.513] (-999.820) (-988.646) (-1012.166) * [-984.734] (-990.784) (-993.904) (-993.444) -- 0:04:59
525000 -- (-994.015) (-984.220) [-987.630] (-986.821) * [-991.171] (-991.886) (-993.277) (-1010.212) -- 0:04:59
Average standard deviation of split frequencies: 0.009321
526000 -- [-980.252] (-984.740) (-996.354) (-993.986) * (-1003.078) (-1000.375) [-991.912] (-1007.555) -- 0:04:59
527000 -- (-990.702) (-985.663) (-996.358) [-989.086] * (-1003.698) (-1010.916) (-983.017) [-992.826] -- 0:04:57
528000 -- (-994.529) [-989.835] (-1003.365) (-992.251) * (-996.221) [-983.964] (-977.628) (-978.370) -- 0:04:57
529000 -- (-982.509) (-999.164) (-995.368) [-987.684] * (-995.174) (-993.522) (-988.799) [-981.401] -- 0:04:57
530000 -- (-979.966) (-998.920) (-990.148) [-981.612] * [-989.752] (-985.010) (-993.134) (-990.191) -- 0:04:57
Average standard deviation of split frequencies: 0.009150
531000 -- (-998.384) (-983.481) (-985.138) [-983.867] * (-999.213) (-986.483) [-993.184] (-994.021) -- 0:04:55
532000 -- (-995.512) (-1000.566) [-986.762] (-992.590) * (-998.998) [-992.289] (-993.873) (-982.024) -- 0:04:55
533000 -- (-992.932) [-991.703] (-992.876) (-989.201) * (-994.815) [-981.122] (-985.642) (-992.112) -- 0:04:54
534000 -- [-989.329] (-991.490) (-990.786) (-981.932) * (-1002.066) [-979.777] (-1007.246) (-989.428) -- 0:04:54
535000 -- (-993.154) (-1000.382) [-979.793] (-993.470) * (-999.132) (-989.191) [-989.852] (-987.609) -- 0:04:53
Average standard deviation of split frequencies: 0.009117
536000 -- (-987.956) (-990.707) [-989.625] (-1010.533) * (-997.805) (-1000.860) (-985.114) [-981.050] -- 0:04:52
537000 -- [-978.819] (-998.047) (-1002.807) (-989.245) * (-989.067) (-1004.808) [-996.341] (-992.689) -- 0:04:52
538000 -- [-985.950] (-992.905) (-1001.204) (-988.092) * (-994.967) [-987.409] (-990.000) (-982.620) -- 0:04:51
539000 -- (-995.467) [-984.167] (-985.062) (-997.885) * (-1003.547) (-986.478) (-986.047) [-996.690] -- 0:04:50
540000 -- [-987.889] (-996.250) (-986.184) (-991.862) * (-995.406) (-1000.737) [-1001.003] (-1000.397) -- 0:04:50
Average standard deviation of split frequencies: 0.008981
541000 -- (-991.712) (-992.529) (-994.128) [-990.535] * [-988.486] (-993.625) (-990.282) (-995.802) -- 0:04:50
542000 -- (-995.906) [-985.705] (-985.073) (-997.361) * (-993.605) (-998.816) (-1000.037) [-983.453] -- 0:04:48
543000 -- (-991.317) (-997.113) [-981.024] (-984.351) * (-998.453) [-990.334] (-980.733) (-985.518) -- 0:04:48
544000 -- (-996.336) (-990.144) (-995.196) [-991.005] * (-979.594) (-992.661) (-1005.143) [-992.386] -- 0:04:48
545000 -- (-987.512) (-1005.015) [-999.080] (-986.486) * [-998.156] (-993.075) (-1005.261) (-995.900) -- 0:04:47
Average standard deviation of split frequencies: 0.008806
546000 -- (-988.743) (-989.015) (-997.821) [-978.553] * (-999.804) (-993.140) [-984.019] (-986.189) -- 0:04:46
547000 -- (-994.198) [-975.362] (-996.417) (-986.480) * (-1005.514) (-985.766) [-976.177] (-997.137) -- 0:04:45
548000 -- [-990.278] (-998.466) (-991.498) (-985.937) * (-990.278) (-986.377) [-995.812] (-981.231) -- 0:04:45
549000 -- [-987.010] (-1002.256) (-1001.463) (-993.429) * (-1003.350) (-987.414) [-995.182] (-987.612) -- 0:04:45
550000 -- (-977.689) (-989.311) (-1005.633) [-990.793] * [-983.211] (-990.533) (-997.141) (-995.521) -- 0:04:43
Average standard deviation of split frequencies: 0.009131
551000 -- (-1004.325) (-983.470) [-985.753] (-983.695) * (-998.883) (-997.649) [-988.845] (-987.670) -- 0:04:43
552000 -- (-990.383) [-978.106] (-995.511) (-988.156) * [-987.931] (-1011.470) (-992.058) (-995.207) -- 0:04:43
553000 -- (-994.780) [-983.254] (-1001.468) (-1005.803) * [-983.581] (-976.186) (-991.151) (-990.378) -- 0:04:42
554000 -- (-999.225) (-993.120) (-1006.268) [-992.294] * [-980.900] (-990.858) (-983.160) (-985.891) -- 0:04:41
555000 -- [-999.658] (-1005.121) (-1002.596) (-984.589) * [-977.604] (-984.749) (-999.990) (-986.989) -- 0:04:40
Average standard deviation of split frequencies: 0.009157
556000 -- (-1009.459) (-996.452) (-984.122) [-991.198] * (-1003.790) (-990.957) (-993.037) [-975.145] -- 0:04:40
557000 -- (-996.291) (-990.312) (-984.987) [-979.224] * (-993.330) (-994.917) (-983.303) [-984.119] -- 0:04:39
558000 -- (-1000.191) (-980.426) [-993.825] (-998.145) * (-996.741) (-1005.423) (-983.793) [-995.999] -- 0:04:38
559000 -- [-976.455] (-991.901) (-985.302) (-1002.369) * (-1005.937) [-982.929] (-999.568) (-995.513) -- 0:04:38
560000 -- (-987.457) (-993.720) (-985.041) [-984.814] * (-996.377) [-974.084] (-986.779) (-985.319) -- 0:04:38
Average standard deviation of split frequencies: 0.009278
561000 -- (-990.961) (-1000.537) (-982.427) [-986.701] * (-998.537) (-986.019) [-982.688] (-993.318) -- 0:04:37
562000 -- [-974.700] (-995.158) (-987.924) (-996.373) * (-1002.453) (-987.930) (-990.315) [-998.140] -- 0:04:36
563000 -- [-988.823] (-987.604) (-990.683) (-1002.314) * [-985.943] (-987.804) (-1003.479) (-990.226) -- 0:04:35
564000 -- (-990.906) [-986.274] (-992.903) (-1004.791) * (-987.420) (-991.506) (-973.526) [-989.676] -- 0:04:35
565000 -- (-997.871) [-986.485] (-1012.531) (-1001.869) * (-984.443) (-994.287) [-978.077] (-1008.360) -- 0:04:34
Average standard deviation of split frequencies: 0.009495
566000 -- [-986.700] (-997.226) (-993.417) (-1010.611) * (-990.588) [-986.835] (-991.286) (-997.716) -- 0:04:33
567000 -- (-995.074) [-985.310] (-1001.821) (-993.674) * (-985.702) [-978.027] (-992.308) (-997.442) -- 0:04:33
568000 -- [-985.113] (-991.575) (-997.043) (-979.129) * (-1000.837) [-992.408] (-993.959) (-989.639) -- 0:04:33
569000 -- (-990.037) [-993.590] (-996.796) (-986.179) * (-994.820) [-978.887] (-992.442) (-981.577) -- 0:04:31
570000 -- (-992.309) [-993.871] (-983.450) (-983.822) * (-998.878) [-990.830] (-1010.623) (-991.809) -- 0:04:31
Average standard deviation of split frequencies: 0.009417
571000 -- (-997.731) (-985.769) (-991.711) [-989.770] * (-988.881) (-1000.579) [-990.467] (-996.110) -- 0:04:31
572000 -- (-990.175) [-986.040] (-989.406) (-990.961) * [-991.318] (-997.980) (-1000.997) (-999.915) -- 0:04:30
573000 -- [-996.110] (-993.696) (-994.302) (-983.362) * [-1001.947] (-993.704) (-1010.572) (-991.924) -- 0:04:29
574000 -- (-1001.778) (-993.676) (-990.194) [-995.794] * (-997.475) (-989.351) [-992.754] (-990.056) -- 0:04:28
575000 -- (-1001.289) [-980.767] (-1005.370) (-1018.585) * (-1001.896) [-986.491] (-993.956) (-986.122) -- 0:04:28
Average standard deviation of split frequencies: 0.009221
576000 -- [-982.930] (-988.454) (-992.917) (-1004.302) * (-999.706) [-999.704] (-1007.793) (-993.257) -- 0:04:27
577000 -- (-993.595) [-995.063] (-1002.959) (-991.172) * (-987.626) (-996.031) [-980.491] (-1005.233) -- 0:04:27
578000 -- (-988.278) [-983.766] (-989.908) (-1003.250) * (-1009.516) [-989.962] (-1003.190) (-997.885) -- 0:04:26
579000 -- (-979.966) [-986.734] (-990.441) (-991.452) * (-996.376) (-992.451) (-998.433) [-980.749] -- 0:04:26
580000 -- (-992.241) (-992.172) [-981.211] (-985.719) * (-996.675) [-979.546] (-982.323) (-988.268) -- 0:04:25
Average standard deviation of split frequencies: 0.009182
581000 -- [-979.625] (-999.080) (-995.773) (-1002.954) * [-982.057] (-989.240) (-980.595) (-1004.011) -- 0:04:24
582000 -- (-996.875) (-998.059) [-996.333] (-988.808) * (-1006.109) (-991.938) [-973.136] (-991.763) -- 0:04:24
583000 -- (-991.761) (-996.746) [-985.299] (-979.427) * [-985.191] (-988.761) (-986.395) (-987.040) -- 0:04:23
584000 -- [-992.925] (-982.798) (-989.958) (-987.475) * (-994.809) (-994.653) [-985.459] (-989.035) -- 0:04:22
585000 -- (-1000.839) [-994.240] (-996.225) (-997.144) * (-994.042) (-980.592) [-990.706] (-988.596) -- 0:04:21
Average standard deviation of split frequencies: 0.009063
586000 -- (-996.380) (-995.029) (-992.979) [-983.344] * (-1000.924) (-1002.810) [-979.219] (-980.538) -- 0:04:21
587000 -- [-984.853] (-990.276) (-999.725) (-984.498) * (-996.771) (-984.819) (-999.514) [-989.162] -- 0:04:21
588000 -- (-985.765) (-979.985) (-992.116) [-987.320] * (-997.891) (-996.594) (-996.491) [-988.610] -- 0:04:19
589000 -- (-994.670) (-992.440) [-990.261] (-982.775) * [-990.808] (-986.635) (-1010.417) (-988.438) -- 0:04:19
590000 -- (-1003.847) [-995.927] (-992.829) (-977.518) * [-979.418] (-990.353) (-994.376) (-996.998) -- 0:04:19
Average standard deviation of split frequencies: 0.008917
591000 -- (-985.930) (-996.003) [-981.133] (-980.705) * (-995.058) [-988.752] (-988.744) (-996.142) -- 0:04:18
592000 -- (-984.806) (-1016.309) [-987.832] (-1004.841) * (-1000.678) (-993.930) (-1006.051) [-1010.616] -- 0:04:17
593000 -- [-984.475] (-995.116) (-992.030) (-1002.354) * (-989.242) (-982.097) (-994.158) [-984.967] -- 0:04:16
594000 -- [-983.389] (-998.392) (-990.794) (-1022.845) * (-981.590) (-1010.272) (-987.154) [-986.412] -- 0:04:16
595000 -- (-991.772) [-994.307] (-982.895) (-1010.260) * [-994.856] (-1007.215) (-1005.726) (-980.954) -- 0:04:15
Average standard deviation of split frequencies: 0.009028
596000 -- (-996.919) [-989.314] (-1002.927) (-1003.352) * (-987.702) (-1000.890) (-995.608) [-988.699] -- 0:04:14
597000 -- (-992.230) [-984.496] (-988.134) (-1005.305) * (-992.370) (-1000.681) (-996.993) [-990.691] -- 0:04:14
598000 -- (-996.598) [-986.401] (-989.146) (-993.016) * (-991.319) [-986.695] (-998.905) (-996.591) -- 0:04:13
599000 -- [-990.460] (-995.861) (-985.681) (-985.849) * [-983.096] (-984.593) (-984.138) (-996.457) -- 0:04:13
600000 -- [-987.046] (-1008.103) (-1003.017) (-996.023) * (-994.702) (-1003.746) [-978.484] (-991.273) -- 0:04:12
Average standard deviation of split frequencies: 0.008660
601000 -- [-979.627] (-992.464) (-983.110) (-996.458) * (-1002.751) (-1020.304) (-989.527) [-991.065] -- 0:04:11
602000 -- (-995.920) (-991.746) [-987.370] (-1014.704) * (-999.880) [-992.177] (-997.489) (-985.278) -- 0:04:11
603000 -- (-1001.900) (-988.630) [-984.920] (-999.518) * (-989.064) (-992.155) (-1005.069) [-985.670] -- 0:04:10
604000 -- (-987.783) (-993.895) (-991.193) [-978.211] * (-990.010) [-986.252] (-985.837) (-999.258) -- 0:04:09
605000 -- (-997.454) [-992.523] (-1005.774) (-994.176) * (-987.310) [-982.786] (-990.315) (-995.518) -- 0:04:09
Average standard deviation of split frequencies: 0.008635
606000 -- (-991.793) (-991.401) [-981.120] (-994.367) * [-989.211] (-998.302) (-992.144) (-988.442) -- 0:04:08
607000 -- (-990.392) [-983.527] (-993.730) (-993.639) * [-985.196] (-994.426) (-987.829) (-996.337) -- 0:04:07
608000 -- [-984.651] (-998.200) (-991.757) (-987.334) * [-990.707] (-994.204) (-992.060) (-997.373) -- 0:04:07
609000 -- (-989.531) (-997.756) [-980.884] (-999.624) * (-1004.528) (-998.420) [-983.505] (-993.410) -- 0:04:06
610000 -- (-992.901) [-996.508] (-997.197) (-996.658) * (-1012.659) (-1002.949) (-991.292) [-979.531] -- 0:04:06
Average standard deviation of split frequencies: 0.008903
611000 -- (-993.539) (-981.398) [-983.948] (-1009.959) * (-999.108) [-977.652] (-990.564) (-987.147) -- 0:04:05
612000 -- (-1004.104) (-983.345) [-975.930] (-994.081) * (-995.099) [-994.783] (-992.832) (-994.411) -- 0:04:04
613000 -- (-1006.347) (-993.834) [-980.537] (-990.542) * (-1007.535) (-995.374) (-1015.904) [-980.222] -- 0:04:04
614000 -- (-980.493) [-996.343] (-989.374) (-983.959) * (-992.779) (-986.358) (-1005.300) [-989.328] -- 0:04:03
615000 -- (-996.495) (-1006.967) [-981.014] (-992.517) * (-990.001) [-995.943] (-1000.535) (-1001.002) -- 0:04:02
Average standard deviation of split frequencies: 0.008919
616000 -- [-987.510] (-987.471) (-981.417) (-995.329) * [-983.490] (-992.482) (-996.465) (-984.179) -- 0:04:02
617000 -- (-992.879) [-989.720] (-986.538) (-988.385) * [-981.700] (-999.475) (-991.361) (-1000.437) -- 0:04:01
618000 -- (-973.540) (-1016.960) (-974.654) [-981.546] * (-991.460) (-1013.964) (-994.352) [-980.623] -- 0:04:01
619000 -- [-983.090] (-989.524) (-987.317) (-1005.449) * (-977.793) [-988.082] (-991.392) (-983.373) -- 0:04:00
620000 -- [-983.756] (-998.922) (-985.420) (-1006.670) * (-983.841) [-983.491] (-986.985) (-980.332) -- 0:03:59
Average standard deviation of split frequencies: 0.008983
621000 -- (-983.046) (-1006.595) (-1003.675) [-991.930] * (-990.932) (-988.441) [-988.780] (-988.064) -- 0:03:59
622000 -- [-982.672] (-1009.387) (-999.156) (-991.591) * (-984.315) [-990.162] (-1006.677) (-999.831) -- 0:03:58
623000 -- [-990.296] (-1008.124) (-995.905) (-989.897) * (-991.078) (-993.270) [-1000.073] (-991.923) -- 0:03:57
624000 -- (-1003.799) (-982.861) (-1005.824) [-984.983] * [-982.950] (-989.826) (-989.084) (-1000.589) -- 0:03:57
625000 -- (-989.501) (-999.790) [-993.433] (-1006.028) * (-1000.799) (-990.073) (-994.740) [-988.999] -- 0:03:56
Average standard deviation of split frequencies: 0.008283
626000 -- [-984.109] (-1015.940) (-991.941) (-992.500) * (-1005.424) (-995.461) [-999.152] (-985.931) -- 0:03:55
627000 -- (-986.492) (-999.402) (-979.127) [-983.228] * (-1005.797) [-994.937] (-999.007) (-1002.822) -- 0:03:54
628000 -- (-994.484) (-1002.694) [-978.807] (-991.194) * (-1010.251) [-984.263] (-996.004) (-993.553) -- 0:03:54
629000 -- (-988.017) [-992.457] (-989.209) (-981.091) * (-1008.727) (-984.087) [-989.686] (-978.329) -- 0:03:54
630000 -- [-1002.164] (-991.886) (-991.956) (-1001.072) * (-996.670) [-988.062] (-1013.026) (-996.200) -- 0:03:53
Average standard deviation of split frequencies: 0.008621
631000 -- (-994.413) (-997.999) (-979.655) [-991.585] * (-978.984) (-1002.282) [-985.675] (-991.428) -- 0:03:52
632000 -- (-1002.891) (-983.902) [-977.640] (-995.780) * (-1002.553) (-999.518) (-996.914) [-985.857] -- 0:03:52
633000 -- (-1003.962) [-983.729] (-983.067) (-1000.429) * [-993.968] (-992.603) (-1007.732) (-1000.580) -- 0:03:51
634000 -- (-1002.080) (-985.019) [-981.519] (-985.455) * [-980.502] (-993.855) (-989.297) (-1005.155) -- 0:03:50
635000 -- [-985.541] (-1000.466) (-989.924) (-997.636) * [-980.837] (-991.203) (-990.433) (-994.548) -- 0:03:49
Average standard deviation of split frequencies: 0.008647
636000 -- (-992.987) (-998.866) [-988.988] (-998.376) * (-987.259) (-988.075) [-1005.873] (-983.406) -- 0:03:49
637000 -- (-997.659) (-1002.447) (-995.608) [-994.190] * (-992.676) [-984.919] (-1000.507) (-990.230) -- 0:03:49
638000 -- (-994.539) (-989.355) [-996.017] (-998.186) * [-978.421] (-997.042) (-995.519) (-986.001) -- 0:03:48
639000 -- (-993.585) (-996.720) (-988.989) [-994.160] * (-998.178) (-992.698) (-1000.563) [-983.145] -- 0:03:47
640000 -- (-998.688) [-986.391] (-993.661) (-991.191) * (-1005.396) [-977.712] (-1000.851) (-999.323) -- 0:03:47
Average standard deviation of split frequencies: 0.008609
641000 -- (-1013.273) (-1000.693) [-994.773] (-985.334) * (-1001.160) (-984.697) [-1000.658] (-992.484) -- 0:03:46
642000 -- (-983.082) (-999.188) [-984.658] (-1000.697) * (-992.351) (-994.364) (-995.720) [-993.005] -- 0:03:45
643000 -- (-997.946) [-995.441] (-986.719) (-991.912) * (-1003.788) (-992.432) [-976.078] (-994.102) -- 0:03:45
644000 -- (-989.505) (-1000.684) [-986.632] (-995.609) * [-988.382] (-993.639) (-991.931) (-998.470) -- 0:03:44
645000 -- (-994.094) [-995.301] (-988.148) (-989.169) * (-992.074) [-989.599] (-986.771) (-988.225) -- 0:03:44
Average standard deviation of split frequencies: 0.008830
646000 -- (-1003.678) (-985.386) (-1002.498) [-988.787] * (-1004.778) [-990.914] (-991.013) (-992.719) -- 0:03:43
647000 -- (-994.557) (-1009.418) (-991.323) [-982.186] * (-995.027) [-990.051] (-991.213) (-986.232) -- 0:03:42
648000 -- (-984.777) (-1007.981) (-996.578) [-988.935] * (-999.753) [-978.791] (-992.766) (-975.227) -- 0:03:42
649000 -- (-1003.918) (-1003.237) (-998.375) [-982.841] * (-997.680) (-994.192) [-990.268] (-1007.064) -- 0:03:41
650000 -- (-988.701) (-1002.430) [-994.753] (-993.199) * (-994.979) [-992.037] (-1003.905) (-990.763) -- 0:03:40
Average standard deviation of split frequencies: 0.008742
651000 -- (-985.986) [-992.668] (-998.660) (-987.455) * [-994.371] (-979.533) (-1007.650) (-1001.042) -- 0:03:40
652000 -- (-984.088) (-1001.854) (-991.193) [-990.788] * (-994.283) (-999.322) (-1004.784) [-983.226] -- 0:03:39
653000 -- [-987.652] (-1009.460) (-984.885) (-1000.679) * [-984.711] (-1005.293) (-991.133) (-992.512) -- 0:03:38
654000 -- (-998.550) (-991.080) (-979.693) [-980.074] * [-981.551] (-986.029) (-997.165) (-993.008) -- 0:03:38
655000 -- [-985.456] (-1002.765) (-990.014) (-983.099) * (-998.808) (-987.197) [-1005.044] (-987.926) -- 0:03:37
Average standard deviation of split frequencies: 0.008767
656000 -- (-990.252) [-993.755] (-1005.838) (-992.835) * (-997.941) [-980.349] (-993.444) (-989.581) -- 0:03:37
657000 -- (-995.712) (-994.743) (-986.766) [-994.135] * (-991.164) (-998.914) (-994.284) [-995.209] -- 0:03:36
658000 -- (-1000.475) (-1021.542) [-986.709] (-988.031) * (-986.624) (-990.005) [-994.896] (-987.684) -- 0:03:35
659000 -- (-995.416) [-1004.217] (-996.230) (-994.760) * [-989.899] (-981.805) (-1000.971) (-993.980) -- 0:03:35
660000 -- (-998.095) (-994.976) [-986.156] (-987.776) * (-988.141) [-989.063] (-991.858) (-994.161) -- 0:03:34
Average standard deviation of split frequencies: 0.008967
661000 -- (-993.803) (-1000.316) [-986.477] (-994.348) * (-992.920) [-988.147] (-1001.115) (-998.807) -- 0:03:33
662000 -- (-990.409) (-996.069) [-994.819] (-995.476) * (-984.719) (-998.494) (-989.915) [-986.743] -- 0:03:33
663000 -- [-988.662] (-991.597) (-986.987) (-990.970) * [-985.346] (-983.036) (-993.574) (-990.363) -- 0:03:32
664000 -- (-991.330) (-996.684) [-988.034] (-1003.784) * [-981.543] (-989.555) (-996.254) (-999.374) -- 0:03:32
665000 -- (-1006.320) (-990.138) [-985.479] (-993.875) * (-988.786) [-990.252] (-1002.683) (-982.508) -- 0:03:31
Average standard deviation of split frequencies: 0.009013
666000 -- (-1003.164) (-990.601) [-991.813] (-997.969) * [-983.627] (-1000.234) (-997.372) (-981.963) -- 0:03:30
667000 -- (-1008.426) [-989.826] (-993.455) (-987.128) * (-1013.955) (-1001.904) [-988.925] (-985.001) -- 0:03:30
668000 -- (-994.582) (-993.138) [-983.303] (-996.085) * (-996.846) (-1003.388) (-1001.897) [-982.156] -- 0:03:29
669000 -- (-990.396) (-995.147) [-985.109] (-987.221) * (-994.937) (-1008.471) (-995.781) [-979.254] -- 0:03:28
670000 -- (-984.968) [-989.939] (-993.483) (-1003.122) * [-982.866] (-1003.141) (-994.523) (-982.988) -- 0:03:28
Average standard deviation of split frequencies: 0.009161
671000 -- (-1005.954) (-983.122) [-988.449] (-995.290) * (-992.523) [-989.280] (-1001.093) (-993.018) -- 0:03:27
672000 -- (-989.327) (-978.204) [-985.397] (-987.214) * (-992.479) (-993.572) [-993.849] (-987.925) -- 0:03:26
673000 -- (-985.618) [-980.129] (-983.957) (-997.314) * (-984.945) [-989.113] (-1011.745) (-996.364) -- 0:03:26
674000 -- [-985.932] (-982.780) (-988.177) (-996.731) * [-987.585] (-983.307) (-996.451) (-998.223) -- 0:03:26
675000 -- [-995.065] (-995.158) (-1001.082) (-992.484) * (-994.542) [-989.192] (-1010.259) (-997.158) -- 0:03:25
Average standard deviation of split frequencies: 0.009515
676000 -- (-990.838) (-998.736) [-1001.192] (-986.221) * (-989.879) (-990.116) (-987.686) [-993.308] -- 0:03:24
677000 -- (-996.379) (-1018.664) (-986.834) [-984.463] * (-1002.671) [-985.385] (-1009.546) (-989.835) -- 0:03:23
678000 -- (-995.173) [-987.284] (-993.785) (-983.485) * [-978.827] (-986.440) (-999.077) (-1000.713) -- 0:03:23
679000 -- (-988.742) (-1003.407) [-986.110] (-982.123) * (-993.796) [-986.305] (-1001.708) (-986.363) -- 0:03:22
680000 -- (-1000.373) [-987.802] (-996.131) (-1006.933) * (-995.809) [-986.008] (-1000.239) (-995.820) -- 0:03:21
Average standard deviation of split frequencies: 0.009188
681000 -- [-989.377] (-1000.465) (-999.249) (-1008.309) * (-996.493) (-992.570) (-1005.076) [-984.629] -- 0:03:21
682000 -- [-992.773] (-992.381) (-989.654) (-998.175) * (-995.387) [-982.559] (-996.792) (-990.317) -- 0:03:20
683000 -- (-994.270) [-993.670] (-1001.725) (-998.973) * (-990.310) (-985.317) [-986.136] (-998.898) -- 0:03:20
684000 -- (-1002.865) [-980.708] (-998.256) (-983.661) * (-997.031) [-981.929] (-992.716) (-993.227) -- 0:03:19
685000 -- (-998.592) [-986.224] (-998.276) (-982.463) * (-999.314) (-983.821) (-998.478) [-990.518] -- 0:03:18
Average standard deviation of split frequencies: 0.009221
686000 -- (-1003.605) (-993.260) (-991.785) [-981.472] * (-994.773) (-1001.566) (-992.251) [-996.667] -- 0:03:18
687000 -- (-992.743) (-1008.983) (-990.751) [-983.852] * [-977.649] (-999.055) (-996.508) (-998.731) -- 0:03:17
688000 -- [-988.613] (-1005.797) (-984.878) (-1006.411) * [-982.869] (-994.781) (-996.422) (-991.158) -- 0:03:17
689000 -- (-984.835) (-995.598) [-989.093] (-998.939) * (-995.094) [-986.574] (-993.249) (-985.090) -- 0:03:16
690000 -- (-990.294) [-977.387] (-994.422) (-990.359) * (-989.840) [-981.310] (-999.899) (-996.501) -- 0:03:15
Average standard deviation of split frequencies: 0.009600
691000 -- [-988.105] (-993.776) (-992.816) (-1009.808) * [-979.909] (-984.321) (-1002.018) (-998.402) -- 0:03:14
692000 -- (-989.035) [-994.255] (-990.314) (-1001.511) * (-997.350) (-988.350) (-999.719) [-987.287] -- 0:03:14
693000 -- (-990.807) (-987.594) [-992.522] (-991.799) * (-989.387) [-996.543] (-987.772) (-993.735) -- 0:03:14
694000 -- (-982.799) (-989.379) [-988.449] (-993.139) * (-991.719) [-979.714] (-979.254) (-989.758) -- 0:03:13
695000 -- (-981.945) (-1002.510) [-979.997] (-993.946) * (-995.494) (-997.147) (-985.787) [-989.174] -- 0:03:12
Average standard deviation of split frequencies: 0.009526
696000 -- (-989.066) (-1002.763) [-977.615] (-988.589) * (-988.660) [-982.773] (-994.952) (-993.998) -- 0:03:12
697000 -- (-985.273) (-1008.377) (-983.546) [-989.915] * (-1000.182) [-979.752] (-990.651) (-988.674) -- 0:03:11
698000 -- (-984.468) (-1002.007) [-980.656] (-992.204) * [-991.137] (-980.512) (-996.089) (-990.911) -- 0:03:10
699000 -- [-986.496] (-991.025) (-1004.697) (-993.355) * (-993.225) (-982.320) [-1000.196] (-997.346) -- 0:03:10
700000 -- (-1017.467) [-985.980] (-996.893) (-998.241) * (-987.240) [-979.725] (-1005.421) (-996.671) -- 0:03:09
Average standard deviation of split frequencies: 0.009289
701000 -- (-1001.917) [-986.562] (-1002.557) (-994.386) * (-993.786) (-984.570) [-990.980] (-1007.748) -- 0:03:08
702000 -- (-995.040) (-987.251) (-1001.428) [-985.920] * (-991.211) (-997.415) [-995.283] (-989.950) -- 0:03:08
703000 -- (-995.398) [-979.067] (-993.908) (-977.581) * [-1002.281] (-995.177) (-995.244) (-987.526) -- 0:03:07
704000 -- (-992.033) (-999.459) (-994.081) [-985.052] * (-986.818) (-996.833) (-987.851) [-976.134] -- 0:03:07
705000 -- (-982.430) (-991.493) (-988.045) [-983.967] * (-995.727) (-987.220) [-988.275] (-987.210) -- 0:03:06
Average standard deviation of split frequencies: 0.008788
706000 -- (-995.123) [-989.010] (-1004.209) (-1001.001) * (-993.375) [-996.669] (-985.898) (-989.864) -- 0:03:05
707000 -- (-984.590) (-992.798) [-978.634] (-990.787) * (-1018.898) [-977.304] (-991.013) (-994.343) -- 0:03:05
708000 -- [-991.100] (-995.516) (-990.299) (-1001.017) * (-1002.983) [-982.650] (-982.786) (-997.268) -- 0:03:04
709000 -- [-986.923] (-983.761) (-995.129) (-1000.315) * (-985.696) [-994.059] (-988.483) (-996.927) -- 0:03:03
710000 -- (-983.877) (-987.585) (-989.274) [-980.665] * (-977.129) [-983.567] (-993.357) (-994.492) -- 0:03:03
Average standard deviation of split frequencies: 0.008452
711000 -- (-981.450) (-988.853) (-989.699) [-976.462] * (-1018.601) (-975.157) [-987.653] (-991.423) -- 0:03:02
712000 -- (-996.948) (-992.286) [-978.413] (-989.252) * (-1004.813) [-980.774] (-985.535) (-992.744) -- 0:03:02
713000 -- [-996.443] (-985.284) (-991.046) (-993.110) * (-1002.466) (-990.776) [-981.189] (-979.698) -- 0:03:01
714000 -- (-991.050) [-987.707] (-987.988) (-993.384) * (-1000.305) [-980.264] (-993.216) (-985.226) -- 0:03:00
715000 -- (-992.559) [-988.075] (-994.812) (-1002.989) * (-999.569) [-992.029] (-985.297) (-994.653) -- 0:03:00
Average standard deviation of split frequencies: 0.008347
716000 -- (-989.966) [-995.194] (-983.085) (-995.418) * (-983.342) [-987.561] (-980.585) (-993.155) -- 0:02:59
717000 -- (-993.297) (-998.115) [-986.440] (-974.967) * (-980.849) [-984.515] (-990.106) (-994.230) -- 0:02:58
718000 -- (-991.727) [-988.567] (-991.442) (-987.401) * [-979.633] (-989.149) (-993.864) (-1007.602) -- 0:02:58
719000 -- (-1014.487) [-987.439] (-985.662) (-996.147) * [-988.787] (-993.526) (-986.662) (-985.919) -- 0:02:57
720000 -- [-987.691] (-984.968) (-1005.709) (-990.039) * (-977.661) (-991.274) [-985.502] (-996.302) -- 0:02:56
Average standard deviation of split frequencies: 0.008133
721000 -- (-992.208) [-989.324] (-1002.951) (-990.626) * (-988.521) (-991.734) [-978.641] (-992.108) -- 0:02:56
722000 -- [-986.695] (-988.377) (-990.886) (-987.909) * (-1000.203) (-1000.667) (-987.845) [-980.177] -- 0:02:55
723000 -- (-989.624) (-995.648) [-988.534] (-980.021) * (-992.333) [-985.405] (-1004.457) (-990.653) -- 0:02:55
724000 -- (-1000.202) (-989.794) (-991.317) [-987.042] * (-991.097) [-995.392] (-991.779) (-997.589) -- 0:02:54
725000 -- (-1004.342) (-999.465) [-983.713] (-987.992) * [-979.614] (-995.587) (-989.621) (-987.532) -- 0:02:53
Average standard deviation of split frequencies: 0.008001
726000 -- (-991.292) (-980.934) [-989.063] (-1004.760) * (-988.797) (-983.624) [-985.720] (-1000.506) -- 0:02:52
727000 -- (-1004.830) (-987.867) [-984.755] (-996.998) * (-989.918) (-996.988) [-984.013] (-1010.015) -- 0:02:52
728000 -- (-999.344) (-994.432) (-989.856) [-992.355] * (-993.294) (-982.617) (-994.220) [-977.103] -- 0:02:51
729000 -- (-994.022) [-984.400] (-994.396) (-973.472) * (-998.790) (-986.702) (-978.385) [-983.615] -- 0:02:51
730000 -- (-988.824) [-982.374] (-992.933) (-987.776) * (-1005.298) (-999.751) [-979.045] (-996.821) -- 0:02:50
Average standard deviation of split frequencies: 0.007950
731000 -- [-1003.920] (-1001.233) (-986.082) (-987.819) * (-1007.376) (-990.807) [-978.347] (-982.361) -- 0:02:49
732000 -- (-1005.641) (-1000.650) [-995.524] (-989.032) * (-990.934) (-1011.091) [-990.973] (-994.753) -- 0:02:49
733000 -- [-981.104] (-991.537) (-997.662) (-984.836) * [-970.450] (-989.079) (-984.493) (-993.260) -- 0:02:48
734000 -- (-985.849) (-1004.502) [-991.729] (-997.805) * (-989.047) (-995.234) [-971.074] (-985.337) -- 0:02:47
735000 -- [-985.127] (-996.513) (-990.949) (-976.230) * (-997.821) [-992.414] (-980.445) (-988.793) -- 0:02:47
Average standard deviation of split frequencies: 0.007985
736000 -- (-992.209) (-997.582) (-991.782) [-982.549] * (-999.524) [-991.707] (-1003.990) (-1002.547) -- 0:02:46
737000 -- [-985.716] (-1010.851) (-996.590) (-984.541) * [-979.210] (-1004.263) (-997.820) (-996.240) -- 0:02:45
738000 -- (-984.441) (-999.955) (-1010.459) [-989.185] * [-985.897] (-985.138) (-1001.724) (-978.586) -- 0:02:45
739000 -- (-995.444) (-1003.933) [-980.128] (-986.126) * (-985.760) (-1002.075) [-978.204] (-987.425) -- 0:02:44
740000 -- [-984.291] (-995.206) (-986.345) (-982.714) * (-995.035) (-994.153) (-988.793) [-975.589] -- 0:02:44
Average standard deviation of split frequencies: 0.007786
741000 -- (-1005.906) (-1016.234) [-982.977] (-979.831) * (-1006.390) (-1002.031) (-997.032) [-976.125] -- 0:02:43
742000 -- (-999.236) (-993.417) [-984.387] (-986.822) * (-991.916) (-1001.737) [-987.250] (-998.361) -- 0:02:42
743000 -- (-999.012) [-994.562] (-993.675) (-987.517) * [-994.063] (-992.126) (-994.385) (-1016.722) -- 0:02:42
744000 -- (-1004.918) [-983.317] (-979.444) (-991.341) * (-1006.703) (-995.149) [-991.593] (-995.611) -- 0:02:41
745000 -- (-993.526) [-986.557] (-998.320) (-991.122) * (-996.475) [-995.181] (-989.020) (-990.571) -- 0:02:40
Average standard deviation of split frequencies: 0.007730
746000 -- [-987.881] (-1013.349) (-987.639) (-1003.265) * (-987.873) (-1000.610) (-974.510) [-986.307] -- 0:02:40
747000 -- [-984.440] (-1024.092) (-981.266) (-995.227) * [-987.809] (-996.221) (-989.790) (-984.189) -- 0:02:39
748000 -- (-1005.413) (-1013.403) (-982.914) [-989.045] * (-991.059) (-993.727) (-1000.286) [-986.345] -- 0:02:39
749000 -- [-981.104] (-992.845) (-995.403) (-992.261) * (-997.991) (-994.013) (-987.941) [-980.696] -- 0:02:38
750000 -- [-996.881] (-992.937) (-990.573) (-979.582) * (-999.875) (-988.287) (-987.827) [-986.768] -- 0:02:37
Average standard deviation of split frequencies: 0.007724
751000 -- (-998.292) (-980.055) (-1001.381) [-981.543] * (-998.693) [-996.187] (-981.214) (-991.147) -- 0:02:37
752000 -- (-994.586) [-984.903] (-985.781) (-993.313) * (-1014.347) (-985.862) (-992.470) [-992.165] -- 0:02:36
753000 -- [-975.337] (-983.962) (-982.827) (-992.018) * (-984.120) [-992.948] (-984.256) (-985.405) -- 0:02:35
754000 -- [-988.449] (-985.362) (-985.069) (-1008.445) * [-991.611] (-996.839) (-991.233) (-987.122) -- 0:02:34
755000 -- (-993.603) (-989.928) [-993.787] (-993.792) * (-1013.878) (-997.985) (-986.985) [-985.067] -- 0:02:34
Average standard deviation of split frequencies: 0.007587
756000 -- [-977.139] (-1002.955) (-982.667) (-996.734) * (-996.083) (-988.645) [-990.365] (-986.753) -- 0:02:33
757000 -- (-983.526) (-991.958) [-993.603] (-1001.498) * [-982.821] (-1004.480) (-991.895) (-993.392) -- 0:02:33
758000 -- (-976.125) [-982.613] (-1000.503) (-1002.977) * (-987.758) [-981.476] (-998.215) (-984.867) -- 0:02:32
759000 -- (-995.558) (-999.306) [-988.469] (-991.917) * (-982.042) (-993.974) [-982.114] (-991.157) -- 0:02:32
760000 -- (-988.891) [-987.343] (-994.297) (-993.806) * [-989.303] (-999.305) (-985.898) (-983.262) -- 0:02:31
Average standard deviation of split frequencies: 0.007850
761000 -- (-999.894) (-996.118) (-992.978) [-1003.659] * (-988.665) (-985.866) [-984.080] (-984.150) -- 0:02:30
762000 -- (-993.594) [-987.496] (-989.139) (-998.838) * (-988.932) (-994.895) (-980.306) [-990.812] -- 0:02:30
763000 -- (-993.332) (-1005.738) [-997.781] (-981.037) * (-992.973) (-1008.655) (-985.231) [-987.038] -- 0:02:29
764000 -- (-986.568) (-1006.296) (-988.580) [-991.587] * (-1003.023) (-988.774) (-998.590) [-993.243] -- 0:02:28
765000 -- (-984.098) [-976.455] (-996.660) (-995.540) * (-991.499) [-983.841] (-1001.343) (-986.515) -- 0:02:28
Average standard deviation of split frequencies: 0.007918
766000 -- [-988.943] (-986.315) (-981.017) (-990.098) * [-990.494] (-993.596) (-999.989) (-987.167) -- 0:02:27
767000 -- [-987.351] (-996.602) (-994.139) (-995.281) * (-995.592) (-991.694) (-984.791) [-984.974] -- 0:02:27
768000 -- (-981.283) [-989.802] (-985.995) (-988.725) * (-975.944) (-993.107) (-998.949) [-993.708] -- 0:02:26
769000 -- [-978.651] (-1000.502) (-996.307) (-989.483) * (-986.707) (-992.361) (-978.265) [-976.651] -- 0:02:25
770000 -- (-989.290) (-1000.937) [-983.416] (-996.593) * (-996.296) (-993.352) [-989.975] (-994.840) -- 0:02:25
Average standard deviation of split frequencies: 0.007830
771000 -- (-988.705) (-995.361) (-998.769) [-969.947] * (-1002.119) (-999.248) [-991.297] (-996.402) -- 0:02:24
772000 -- (-997.195) (-994.512) (-988.630) [-987.453] * (-982.162) (-999.246) [-1002.262] (-992.742) -- 0:02:23
773000 -- (-986.025) (-998.833) [-977.906] (-983.304) * (-991.651) (-1002.282) (-991.885) [-982.474] -- 0:02:23
774000 -- (-983.633) [-992.980] (-982.238) (-997.797) * [-979.987] (-985.133) (-1004.059) (-996.324) -- 0:02:22
775000 -- (-992.577) (-992.268) [-980.469] (-994.187) * (-989.704) (-991.048) [-996.551] (-1012.976) -- 0:02:21
Average standard deviation of split frequencies: 0.007776
776000 -- [-993.309] (-987.607) (-991.780) (-994.370) * (-984.221) (-997.052) [-987.809] (-991.136) -- 0:02:21
777000 -- [-981.062] (-991.340) (-1003.231) (-995.443) * (-984.542) [-980.342] (-987.537) (-991.374) -- 0:02:20
778000 -- (-980.596) (-1016.416) [-976.572] (-981.244) * (-980.147) [-981.059] (-991.927) (-989.199) -- 0:02:20
779000 -- [-982.728] (-986.941) (-983.160) (-977.491) * (-987.514) [-987.548] (-1005.242) (-988.167) -- 0:02:19
780000 -- (-995.216) (-993.602) (-996.762) [-990.577] * [-987.832] (-995.405) (-990.291) (-991.598) -- 0:02:18
Average standard deviation of split frequencies: 0.007629
781000 -- [-983.115] (-994.192) (-1012.500) (-992.075) * [-986.738] (-982.842) (-995.609) (-993.862) -- 0:02:18
782000 -- [-983.508] (-986.191) (-1014.710) (-990.211) * (-988.792) [-989.641] (-1003.585) (-1008.640) -- 0:02:17
783000 -- (-993.783) (-1003.057) (-1006.839) [-984.807] * (-986.259) (-992.674) (-998.948) [-998.802] -- 0:02:16
784000 -- (-986.411) (-993.837) [-986.391] (-1001.570) * [-987.642] (-1004.536) (-993.178) (-982.686) -- 0:02:16
785000 -- (-981.493) (-987.485) (-992.289) [-981.346] * (-994.310) [-985.464] (-985.481) (-996.249) -- 0:02:15
Average standard deviation of split frequencies: 0.007857
786000 -- [-986.718] (-1000.345) (-990.385) (-1000.453) * [-994.199] (-1005.951) (-1001.087) (-997.700) -- 0:02:15
787000 -- (-995.460) [-981.535] (-989.473) (-1002.160) * [-991.426] (-990.013) (-998.617) (-993.254) -- 0:02:14
788000 -- (-989.660) (-979.446) [-983.879] (-988.095) * (-996.192) (-997.685) [-990.657] (-998.105) -- 0:02:13
789000 -- (-993.503) (-1009.501) [-988.818] (-995.874) * (-994.448) [-982.985] (-990.233) (-985.362) -- 0:02:13
790000 -- (-981.201) (-997.585) [-986.258] (-991.220) * [-979.531] (-1016.126) (-1004.895) (-985.681) -- 0:02:12
Average standard deviation of split frequencies: 0.007651
791000 -- (-984.417) (-991.003) [-987.386] (-991.483) * (-992.826) (-1005.149) [-983.144] (-999.152) -- 0:02:12
792000 -- [-989.029] (-990.849) (-996.719) (-997.818) * (-984.225) (-993.068) (-987.622) [-987.470] -- 0:02:11
793000 -- (-985.828) [-980.338] (-987.963) (-982.977) * (-995.212) (-982.165) (-995.436) [-991.116] -- 0:02:10
794000 -- (-996.738) [-997.694] (-993.252) (-980.833) * (-998.578) (-992.259) [-989.202] (-997.664) -- 0:02:09
795000 -- (-992.060) (-983.720) [-994.618] (-1000.397) * (-994.998) (-993.230) [-981.686] (-987.947) -- 0:02:09
Average standard deviation of split frequencies: 0.007482
796000 -- (-982.795) [-989.748] (-998.800) (-985.742) * (-989.111) (-997.898) [-988.289] (-994.883) -- 0:02:08
797000 -- (-992.314) (-983.693) [-982.356] (-992.613) * [-982.070] (-992.363) (-985.876) (-989.331) -- 0:02:08
798000 -- (-991.719) [-998.042] (-985.280) (-1011.306) * (-997.759) (-984.428) [-987.613] (-1004.588) -- 0:02:07
799000 -- (-1002.126) (-993.874) [-979.869] (-997.685) * [-992.245] (-999.067) (-991.231) (-997.919) -- 0:02:07
800000 -- [-982.382] (-990.278) (-981.385) (-998.061) * (-993.851) (-982.115) (-984.415) [-982.090] -- 0:02:06
Average standard deviation of split frequencies: 0.007320
801000 -- (-1005.334) [-986.870] (-982.199) (-1006.441) * [-986.113] (-999.706) (-991.382) (-992.115) -- 0:02:05
802000 -- (-994.779) (-1006.054) (-997.906) [-1003.136] * (-995.017) (-1003.004) (-999.135) [-988.924] -- 0:02:05
803000 -- [-994.015] (-1002.252) (-989.678) (-984.253) * [-984.670] (-987.673) (-994.030) (-983.703) -- 0:02:04
804000 -- (-1009.350) (-988.813) [-996.971] (-983.523) * [-981.397] (-1008.101) (-987.490) (-982.820) -- 0:02:03
805000 -- (-1004.521) (-997.992) (-993.494) [-989.005] * [-988.446] (-996.281) (-989.116) (-996.251) -- 0:02:03
Average standard deviation of split frequencies: 0.007194
806000 -- (-996.149) (-1009.005) (-991.821) [-980.679] * (-989.920) (-990.519) [-987.726] (-998.233) -- 0:02:02
807000 -- (-998.589) (-995.090) [-987.320] (-997.690) * [-986.884] (-994.370) (-990.542) (-1014.349) -- 0:02:01
808000 -- [-986.445] (-982.615) (-998.178) (-992.966) * (-985.436) (-996.942) [-981.140] (-986.400) -- 0:02:01
809000 -- (-1015.124) (-990.281) (-993.431) [-981.652] * (-1001.514) (-1008.791) [-992.705] (-1005.911) -- 0:02:00
810000 -- (-988.765) [-987.230] (-1008.021) (-988.327) * (-991.310) (-1005.638) (-992.570) [-989.383] -- 0:02:00
Average standard deviation of split frequencies: 0.006862
811000 -- (-991.732) (-990.639) (-992.747) [-983.528] * (-993.824) (-997.909) (-978.200) [-983.167] -- 0:01:59
812000 -- [-988.441] (-1000.158) (-1000.337) (-985.314) * (-999.940) (-998.569) [-980.621] (-997.462) -- 0:01:58
813000 -- (-991.845) [-980.696] (-1003.625) (-990.859) * (-993.886) (-991.460) [-986.102] (-996.355) -- 0:01:58
814000 -- (-985.656) (-989.020) [-990.898] (-1007.037) * (-990.763) [-986.258] (-982.852) (-998.470) -- 0:01:57
815000 -- [-979.599] (-995.974) (-994.749) (-996.318) * (-994.460) (-977.271) [-990.300] (-997.040) -- 0:01:56
Average standard deviation of split frequencies: 0.007009
816000 -- (-996.393) (-990.015) (-989.629) [-984.260] * (-997.570) (-989.066) (-996.849) [-984.879] -- 0:01:56
817000 -- [-986.943] (-1004.307) (-986.792) (-997.064) * (-996.979) (-985.528) [-983.605] (-992.217) -- 0:01:55
818000 -- (-991.156) (-996.155) (-989.991) [-994.665] * (-1001.046) [-980.175] (-986.649) (-992.573) -- 0:01:55
819000 -- (-990.749) [-988.577] (-986.056) (-986.998) * [-984.944] (-994.603) (-1008.839) (-1003.100) -- 0:01:54
820000 -- (-980.822) (-993.726) (-984.708) [-983.210] * (-989.025) [-983.694] (-998.694) (-995.720) -- 0:01:53
Average standard deviation of split frequencies: 0.006950
821000 -- (-995.600) (-994.981) (-1000.068) [-997.844] * (-1002.113) (-989.099) (-986.304) [-997.519] -- 0:01:53
822000 -- (-990.733) (-989.958) [-988.690] (-987.419) * (-980.645) (-994.737) [-976.927] (-991.094) -- 0:01:52
823000 -- (-985.051) [-990.512] (-1002.077) (-997.220) * [-990.987] (-991.543) (-998.855) (-989.449) -- 0:01:52
824000 -- (-986.896) [-987.246] (-992.378) (-1000.770) * [-984.139] (-997.419) (-1000.194) (-1008.898) -- 0:01:51
825000 -- (-990.456) [-987.373] (-1000.722) (-1004.620) * (-995.194) (-987.265) (-981.566) [-981.286] -- 0:01:50
Average standard deviation of split frequencies: 0.006715
826000 -- (-991.501) [-986.829] (-994.128) (-989.276) * [-979.790] (-995.601) (-1015.700) (-979.042) -- 0:01:50
827000 -- (-981.730) [-985.444] (-982.143) (-987.391) * (-989.052) [-996.147] (-993.611) (-987.342) -- 0:01:49
828000 -- (-1005.582) (-990.815) [-980.804] (-997.480) * (-996.132) (-999.573) (-995.319) [-982.074] -- 0:01:48
829000 -- (-990.924) [-989.282] (-994.322) (-982.429) * (-985.463) (-998.803) (-993.261) [-982.047] -- 0:01:48
830000 -- (-990.706) [-981.364] (-983.911) (-992.144) * (-995.486) [-988.821] (-996.234) (-992.568) -- 0:01:47
Average standard deviation of split frequencies: 0.006659
831000 -- [-991.928] (-986.481) (-995.707) (-999.752) * (-994.496) [-985.080] (-1001.963) (-987.529) -- 0:01:46
832000 -- (-1002.643) [-985.368] (-985.436) (-992.886) * (-1009.651) (-986.665) (-986.985) [-987.361] -- 0:01:46
833000 -- (-983.400) (-988.313) (-1012.775) [-986.591] * (-988.921) (-993.117) (-989.539) [-980.904] -- 0:01:45
834000 -- (-1004.037) (-990.517) (-986.217) [-985.360] * [-984.558] (-985.405) (-1007.152) (-995.855) -- 0:01:45
835000 -- (-984.536) (-1000.986) (-984.011) [-983.212] * (-1009.358) [-981.387] (-987.340) (-996.949) -- 0:01:44
Average standard deviation of split frequencies: 0.006334
836000 -- [-987.297] (-1005.702) (-997.102) (-994.208) * (-980.779) (-988.663) [-984.989] (-997.133) -- 0:01:43
837000 -- (-991.527) (-998.434) [-988.782] (-993.760) * (-990.842) (-989.552) [-979.335] (-1001.957) -- 0:01:43
838000 -- (-994.773) (-985.201) [-982.528] (-983.233) * (-987.424) (-994.609) [-986.297] (-992.364) -- 0:01:42
839000 -- (-992.601) (-988.617) [-976.631] (-991.851) * [-979.913] (-996.753) (-986.312) (-987.342) -- 0:01:41
840000 -- (-990.054) (-990.062) (-993.746) [-980.557] * (-987.156) (-1003.537) (-1001.259) [-985.674] -- 0:01:41
Average standard deviation of split frequencies: 0.006224
841000 -- (-988.491) (-996.551) [-980.466] (-987.595) * [-992.296] (-992.615) (-999.591) (-995.245) -- 0:01:40
842000 -- [-990.148] (-995.666) (-986.966) (-994.776) * (-994.798) (-993.433) (-1008.454) [-990.088] -- 0:01:40
843000 -- (-996.297) [-980.097] (-992.333) (-1000.538) * (-986.844) (-998.773) (-984.545) [-992.591] -- 0:01:39
844000 -- (-1003.543) [-984.077] (-989.913) (-994.861) * (-982.575) (-1001.261) (-1003.898) [-978.464] -- 0:01:38
845000 -- [-983.279] (-987.069) (-1002.430) (-984.168) * (-988.449) (-983.630) [-993.616] (-989.553) -- 0:01:37
Average standard deviation of split frequencies: 0.006352
846000 -- [-1000.287] (-984.867) (-994.300) (-987.036) * (-995.342) (-975.298) (-994.857) [-985.704] -- 0:01:37
847000 -- [-985.449] (-984.040) (-994.462) (-989.775) * [-985.062] (-989.368) (-1008.314) (-992.075) -- 0:01:36
848000 -- [-976.149] (-979.091) (-992.618) (-986.240) * [-994.878] (-993.686) (-996.632) (-989.433) -- 0:01:36
849000 -- (-1002.040) (-980.269) (-991.351) [-985.947] * (-990.221) [-999.945] (-984.180) (-997.076) -- 0:01:35
850000 -- [-979.227] (-986.920) (-989.491) (-1002.165) * (-981.886) (-1002.642) (-992.017) [-995.986] -- 0:01:34
Average standard deviation of split frequencies: 0.006133
851000 -- [-989.240] (-997.102) (-984.104) (-997.603) * (-983.816) (-1003.788) [-987.210] (-996.632) -- 0:01:34
852000 -- [-974.422] (-996.323) (-1001.182) (-991.995) * [-986.184] (-981.968) (-984.303) (-996.949) -- 0:01:33
853000 -- [-980.395] (-1019.751) (-999.106) (-995.082) * (-990.398) (-993.157) [-987.878] (-996.326) -- 0:01:32
854000 -- (-988.096) (-1004.517) (-992.855) [-991.125] * (-1000.376) (-1003.871) [-982.728] (-992.862) -- 0:01:32
855000 -- [-982.439] (-1001.508) (-989.572) (-983.010) * (-1000.528) (-987.754) [-985.859] (-999.841) -- 0:01:31
Average standard deviation of split frequencies: 0.006039
856000 -- (-1002.877) (-988.189) (-989.193) [-979.695] * [-986.124] (-995.483) (-986.564) (-986.455) -- 0:01:31
857000 -- [-994.970] (-996.217) (-1002.675) (-1004.231) * [-986.698] (-995.023) (-987.746) (-1012.336) -- 0:01:30
858000 -- (-997.873) (-988.447) [-1001.037] (-1001.362) * (-997.120) [-980.878] (-986.284) (-1010.521) -- 0:01:29
859000 -- (-991.277) (-995.136) [-989.196] (-984.273) * (-997.003) (-990.608) [-989.168] (-999.958) -- 0:01:29
860000 -- (-1002.271) (-1005.319) (-996.647) [-993.598] * (-992.583) (-996.336) (-986.308) [-979.301] -- 0:01:28
Average standard deviation of split frequencies: 0.006098
861000 -- (-1008.221) (-1005.742) (-978.107) [-981.315] * [-991.387] (-1001.988) (-996.870) (-992.566) -- 0:01:27
862000 -- (-1016.241) (-998.283) (-1003.803) [-977.986] * (-990.771) [-994.682] (-991.647) (-983.572) -- 0:01:27
863000 -- (-1008.864) (-995.121) [-990.776] (-990.811) * (-988.124) (-986.469) (-985.031) [-987.093] -- 0:01:26
864000 -- (-1005.940) (-993.544) (-983.591) [-988.893] * [-988.811] (-999.509) (-979.406) (-986.178) -- 0:01:26
865000 -- (-990.498) (-990.920) (-1007.966) [-993.229] * [-992.144] (-995.490) (-988.574) (-1002.145) -- 0:01:25
Average standard deviation of split frequencies: 0.005770
866000 -- [-983.899] (-997.720) (-1004.829) (-999.041) * (-991.375) (-998.955) [-972.954] (-998.632) -- 0:01:24
867000 -- (-991.551) (-980.066) [-988.806] (-982.356) * (-988.872) (-998.747) [-984.542] (-996.982) -- 0:01:24
868000 -- (-980.287) [-995.301] (-1012.432) (-998.241) * [-980.309] (-1007.313) (-977.318) (-992.960) -- 0:01:23
869000 -- [-981.227] (-1004.783) (-986.595) (-990.736) * (-1003.579) (-984.563) (-1002.483) [-977.400] -- 0:01:22
870000 -- (-978.509) (-1006.314) (-993.203) [-989.345] * (-994.286) (-992.144) [-986.227] (-982.836) -- 0:01:22
Average standard deviation of split frequencies: 0.005847
871000 -- (-991.330) (-1008.094) (-998.552) [-983.783] * (-1007.059) (-991.327) [-987.542] (-994.660) -- 0:01:21
872000 -- (-990.789) (-993.213) (-996.303) [-987.785] * [-989.848] (-990.500) (-975.987) (-1004.904) -- 0:01:20
873000 -- (-993.471) [-985.187] (-989.357) (-987.392) * (-989.186) (-985.176) [-982.821] (-993.560) -- 0:01:20
874000 -- (-988.117) [-985.563] (-996.598) (-990.083) * (-1001.723) [-977.935] (-996.047) (-1014.183) -- 0:01:19
875000 -- [-991.109] (-975.678) (-990.438) (-992.999) * [-1000.150] (-994.018) (-996.652) (-988.681) -- 0:01:19
Average standard deviation of split frequencies: 0.005740
876000 -- (-987.571) (-982.850) [-981.088] (-1001.282) * (-997.985) [-999.900] (-992.462) (-997.929) -- 0:01:18
877000 -- [-982.650] (-998.338) (-978.645) (-998.328) * [-984.453] (-981.940) (-977.132) (-981.390) -- 0:01:17
878000 -- (-1006.144) [-984.841] (-990.547) (-995.861) * (-982.567) (-1007.543) [-975.370] (-1005.663) -- 0:01:17
879000 -- [-985.663] (-987.301) (-994.723) (-1008.598) * (-989.037) (-990.156) [-997.208] (-997.485) -- 0:01:16
880000 -- [-982.869] (-996.933) (-994.108) (-995.565) * (-996.699) (-1006.357) [-981.392] (-985.531) -- 0:01:15
Average standard deviation of split frequencies: 0.005907
881000 -- (-987.481) [-999.791] (-989.680) (-1010.643) * (-990.108) (-1005.524) [-997.379] (-973.311) -- 0:01:15
882000 -- [-987.571] (-1001.856) (-981.157) (-994.372) * (-986.391) [-996.160] (-1006.471) (-979.694) -- 0:01:14
883000 -- (-984.678) (-999.789) (-993.176) [-994.198] * (-994.083) (-989.730) (-1014.366) [-984.406] -- 0:01:13
884000 -- (-996.128) [-992.609] (-994.602) (-1006.537) * (-993.924) [-985.054] (-1002.703) (-982.224) -- 0:01:13
885000 -- (-985.380) [-994.026] (-989.867) (-1000.304) * [-985.936] (-988.232) (-1002.489) (-994.698) -- 0:01:12
Average standard deviation of split frequencies: 0.005675
886000 -- [-985.249] (-990.562) (-997.793) (-994.498) * (-992.859) [-990.709] (-998.469) (-991.675) -- 0:01:12
887000 -- [-992.895] (-985.530) (-994.814) (-1003.224) * (-988.678) [-990.801] (-989.679) (-1006.051) -- 0:01:11
888000 -- (-989.753) (-998.163) [-1001.321] (-1002.302) * (-992.761) (-981.613) (-989.649) [-993.208] -- 0:01:10
889000 -- (-989.742) [-999.909] (-983.948) (-1012.192) * (-997.871) [-977.090] (-994.091) (-1001.016) -- 0:01:10
890000 -- (-989.503) (-996.570) [-979.955] (-987.034) * [-982.828] (-996.442) (-992.252) (-1004.401) -- 0:01:09
Average standard deviation of split frequencies: 0.005434
891000 -- (-998.711) (-999.194) [-990.091] (-990.969) * [-978.498] (-990.249) (-996.361) (-996.160) -- 0:01:08
892000 -- [-985.292] (-998.344) (-1006.765) (-990.485) * (-996.871) [-994.810] (-989.295) (-989.673) -- 0:01:08
893000 -- [-986.765] (-993.832) (-1005.414) (-990.913) * (-1003.510) [-990.413] (-986.095) (-993.872) -- 0:01:07
894000 -- (-989.093) [-999.807] (-1003.791) (-997.481) * (-999.919) [-974.519] (-991.236) (-993.384) -- 0:01:06
895000 -- (-1005.392) (-1003.240) [-997.611] (-995.963) * (-983.727) (-987.120) [-990.209] (-992.393) -- 0:01:06
Average standard deviation of split frequencies: 0.005665
896000 -- (-988.033) [-995.441] (-991.297) (-996.623) * (-991.200) (-983.352) [-992.809] (-1004.480) -- 0:01:05
897000 -- [-984.405] (-990.694) (-983.076) (-995.262) * [-979.119] (-991.104) (-989.851) (-993.229) -- 0:01:05
898000 -- (-1005.802) [-979.627] (-981.347) (-1006.073) * (-987.099) (-983.867) (-987.158) [-988.476] -- 0:01:04
899000 -- [-995.275] (-994.374) (-992.081) (-990.682) * (-984.610) [-985.595] (-1005.791) (-1001.268) -- 0:01:03
900000 -- (-989.874) (-994.615) (-1014.243) [-980.300] * (-989.964) [-977.446] (-1000.228) (-993.179) -- 0:01:03
Average standard deviation of split frequencies: 0.005565
901000 -- [-989.934] (-1003.596) (-1001.377) (-990.945) * (-989.795) [-985.293] (-996.550) (-990.508) -- 0:01:02
902000 -- (-994.447) (-999.067) (-993.981) [-977.253] * (-992.908) [-976.887] (-992.731) (-1001.241) -- 0:01:01
903000 -- (-993.694) [-995.222] (-987.855) (-990.134) * (-1004.220) (-993.536) [-987.957] (-1000.005) -- 0:01:01
904000 -- (-1005.366) (-987.096) [-990.288] (-987.433) * (-992.553) (-988.399) (-988.342) [-978.548] -- 0:01:00
905000 -- (-997.147) [-980.573] (-992.260) (-998.627) * (-988.070) (-994.393) [-988.706] (-997.655) -- 0:01:00
Average standard deviation of split frequencies: 0.005498
906000 -- (-1001.167) [-989.372] (-1001.376) (-987.581) * (-991.883) (-988.442) [-990.980] (-991.316) -- 0:00:59
907000 -- [-992.313] (-996.256) (-983.145) (-993.783) * [-982.302] (-990.682) (-987.997) (-993.374) -- 0:00:58
908000 -- (-996.614) (-999.354) [-992.617] (-988.671) * (-991.908) (-1005.871) (-987.965) [-988.357] -- 0:00:58
909000 -- (-1005.541) (-991.164) [-989.206] (-997.185) * (-991.952) (-1000.260) [-992.496] (-989.305) -- 0:00:57
910000 -- (-995.776) [-980.746] (-999.133) (-1009.298) * (-1006.357) (-994.199) (-987.592) [-980.102] -- 0:00:56
Average standard deviation of split frequencies: 0.005435
911000 -- (-982.334) (-1004.529) [-986.218] (-1013.644) * (-988.415) [-996.659] (-989.968) (-980.492) -- 0:00:56
912000 -- [-978.549] (-996.566) (-983.650) (-986.539) * [-987.906] (-1015.864) (-985.092) (-989.203) -- 0:00:55
913000 -- (-984.047) (-985.696) (-996.670) [-983.027] * [-989.313] (-992.705) (-991.703) (-998.560) -- 0:00:54
914000 -- [-986.703] (-994.004) (-988.678) (-996.615) * (-1000.016) [-983.007] (-984.695) (-998.839) -- 0:00:54
915000 -- (-997.843) (-991.591) [-985.543] (-988.456) * (-973.980) (-995.814) [-987.854] (-1010.089) -- 0:00:53
Average standard deviation of split frequencies: 0.005472
916000 -- (-990.657) [-986.961] (-983.934) (-999.894) * (-985.155) (-1008.323) [-984.544] (-996.734) -- 0:00:53
917000 -- (-984.344) (-985.588) [-979.760] (-990.804) * (-988.749) [-978.129] (-991.615) (-1006.703) -- 0:00:52
918000 -- [-986.707] (-992.548) (-993.846) (-1001.328) * (-1005.429) [-991.264] (-988.878) (-991.746) -- 0:00:51
919000 -- [-990.758] (-990.236) (-989.818) (-993.172) * (-987.433) (-993.574) [-988.861] (-988.913) -- 0:00:51
920000 -- (-995.184) (-978.800) (-986.510) [-992.611] * [-979.935] (-989.920) (-999.307) (-995.565) -- 0:00:50
Average standard deviation of split frequencies: 0.005462
921000 -- [-981.244] (-992.994) (-982.651) (-990.005) * (-997.112) [-990.828] (-999.312) (-996.591) -- 0:00:49
922000 -- (-993.444) [-977.968] (-977.824) (-1003.614) * (-997.597) [-988.028] (-1003.116) (-987.721) -- 0:00:49
923000 -- [-980.084] (-985.833) (-982.381) (-1006.781) * (-1004.891) (-1006.424) (-993.730) [-975.859] -- 0:00:48
924000 -- [-988.047] (-994.600) (-999.309) (-995.557) * (-998.066) (-991.131) (-1003.318) [-975.405] -- 0:00:48
925000 -- [-996.598] (-991.821) (-1000.292) (-984.982) * (-978.871) (-999.932) [-990.236] (-994.673) -- 0:00:47
Average standard deviation of split frequencies: 0.005277
926000 -- (-994.122) (-1002.085) (-996.406) [-995.339] * (-989.053) (-996.077) (-990.554) [-984.299] -- 0:00:46
927000 -- (-986.177) (-992.014) (-1000.664) [-988.969] * (-998.789) (-976.884) [-993.443] (-995.474) -- 0:00:46
928000 -- [-991.683] (-994.242) (-999.142) (-989.490) * [-984.967] (-979.743) (-1001.687) (-1008.609) -- 0:00:45
929000 -- (-997.823) (-991.820) [-986.120] (-997.677) * (-998.435) [-988.169] (-993.682) (-991.040) -- 0:00:44
930000 -- (-993.215) [-990.559] (-1007.387) (-983.039) * (-993.408) (-983.647) [-987.126] (-994.222) -- 0:00:44
Average standard deviation of split frequencies: 0.005217
931000 -- (-995.486) (-1011.180) (-986.005) [-985.436] * [-981.719] (-992.596) (-992.941) (-994.724) -- 0:00:43
932000 -- (-990.308) (-993.771) (-994.733) [-987.825] * [-982.564] (-990.037) (-994.690) (-981.499) -- 0:00:42
933000 -- (-998.839) (-980.569) [-994.283] (-998.557) * [-997.587] (-994.631) (-999.217) (-989.729) -- 0:00:42
934000 -- [-986.872] (-981.085) (-992.354) (-1004.292) * (-982.678) (-991.326) (-989.101) [-984.549] -- 0:00:41
935000 -- (-984.236) (-994.394) [-997.371] (-994.241) * (-992.805) (-990.608) (-991.589) [-987.834] -- 0:00:41
Average standard deviation of split frequencies: 0.005144
936000 -- (-997.305) (-992.764) [-979.264] (-1003.527) * (-1007.719) [-992.272] (-991.185) (-995.646) -- 0:00:40
937000 -- (-980.880) [-982.695] (-988.871) (-991.918) * (-998.851) (-987.377) (-994.880) [-990.666] -- 0:00:39
938000 -- (-996.676) (-990.336) (-997.937) [-975.751] * (-983.722) [-987.333] (-1010.114) (-991.166) -- 0:00:39
939000 -- (-991.644) (-1000.935) (-992.649) [-975.820] * [-991.018] (-1000.838) (-991.952) (-989.088) -- 0:00:38
940000 -- (-988.316) (-995.811) (-984.468) [-980.921] * (-995.801) (-990.128) (-984.655) [-986.305] -- 0:00:37
Average standard deviation of split frequencies: 0.004886
941000 -- (-997.228) (-984.527) [-993.611] (-990.988) * (-990.045) [-983.992] (-999.115) (-996.116) -- 0:00:37
942000 -- [-984.520] (-976.084) (-1002.162) (-1007.426) * (-1013.945) [-984.553] (-980.036) (-985.253) -- 0:00:36
943000 -- (-992.572) [-987.519] (-991.290) (-1002.002) * (-1001.837) [-987.106] (-985.283) (-1005.865) -- 0:00:36
944000 -- (-1000.608) (-994.082) [-978.865] (-1013.537) * [-992.230] (-1002.064) (-996.217) (-1005.674) -- 0:00:35
945000 -- (-997.130) (-989.886) [-980.795] (-991.323) * (-997.045) [-985.833] (-986.377) (-990.462) -- 0:00:34
Average standard deviation of split frequencies: 0.005001
946000 -- (-994.668) (-995.340) [-986.124] (-984.790) * (-983.229) (-991.516) [-1001.254] (-985.045) -- 0:00:34
947000 -- (-993.555) (-996.655) [-979.913] (-994.398) * [-981.411] (-1001.396) (-1004.567) (-988.323) -- 0:00:33
948000 -- (-997.026) (-990.083) (-999.158) [-990.058] * [-987.829] (-997.543) (-1004.471) (-1005.611) -- 0:00:32
949000 -- [-979.849] (-998.009) (-983.943) (-996.536) * [-988.652] (-1001.037) (-990.511) (-994.663) -- 0:00:32
950000 -- (-984.039) (-994.056) (-987.919) [-985.291] * (-988.787) [-990.718] (-993.486) (-992.884) -- 0:00:31
Average standard deviation of split frequencies: 0.004994
951000 -- (-982.577) (-984.118) (-990.339) [-981.056] * (-997.807) [-974.949] (-989.680) (-987.870) -- 0:00:30
952000 -- (-992.250) (-991.680) (-999.960) [-985.534] * (-1000.338) (-991.018) (-989.345) [-988.987] -- 0:00:30
953000 -- (-985.195) (-993.018) (-1002.149) [-988.516] * (-989.282) (-991.441) (-990.541) [-984.761] -- 0:00:29
954000 -- (-1002.799) (-990.471) (-984.127) [-989.962] * [-985.625] (-996.049) (-989.739) (-991.337) -- 0:00:29
955000 -- (-998.101) [-985.947] (-1000.324) (-991.934) * (-985.374) (-1003.202) [-987.287] (-982.086) -- 0:00:28
Average standard deviation of split frequencies: 0.004829
956000 -- [-1000.317] (-993.945) (-998.676) (-995.087) * (-1004.736) [-986.524] (-994.920) (-997.190) -- 0:00:27
957000 -- (-1000.371) (-1000.108) (-981.638) [-982.643] * (-994.464) (-987.924) (-987.117) [-982.787] -- 0:00:27
958000 -- [-1000.453] (-1004.601) (-992.544) (-997.522) * (-1005.475) (-995.605) (-984.733) [-986.143] -- 0:00:26
959000 -- (-1001.569) (-993.764) (-998.434) [-990.936] * [-984.063] (-1000.546) (-980.168) (-1011.995) -- 0:00:25
960000 -- [-986.478] (-1014.391) (-991.448) (-986.024) * (-986.255) (-1002.925) [-979.135] (-995.533) -- 0:00:25
Average standard deviation of split frequencies: 0.004653
961000 -- (-979.859) (-1001.268) (-992.033) [-985.557] * [-992.843] (-1008.179) (-980.837) (-982.174) -- 0:00:24
962000 -- (-984.133) (-997.674) [-974.656] (-979.233) * [-995.653] (-984.437) (-985.724) (-998.778) -- 0:00:24
963000 -- (-986.691) (-1000.334) (-991.805) [-985.965] * [-985.734] (-994.445) (-982.924) (-996.497) -- 0:00:23
964000 -- (-982.073) (-983.108) (-1000.902) [-979.523] * [-982.632] (-990.617) (-1012.826) (-998.453) -- 0:00:22
965000 -- [-980.753] (-993.506) (-1007.370) (-985.591) * (-1007.372) (-992.175) [-985.837] (-992.441) -- 0:00:22
Average standard deviation of split frequencies: 0.004441
966000 -- [-985.826] (-995.506) (-993.101) (-1003.649) * (-995.321) [-997.445] (-977.254) (-1003.770) -- 0:00:21
967000 -- [-987.506] (-1009.391) (-984.473) (-1001.067) * (-996.945) (-1002.602) [-989.410] (-989.879) -- 0:00:20
968000 -- (-987.635) [-977.239] (-996.632) (-993.565) * (-985.928) [-984.605] (-995.473) (-983.603) -- 0:00:20
969000 -- (-997.654) [-981.404] (-996.634) (-999.491) * (-995.181) [-991.507] (-994.128) (-981.188) -- 0:00:19
970000 -- (-994.660) (-988.807) (-984.936) [-993.392] * [-995.701] (-1011.045) (-998.913) (-994.352) -- 0:00:18
Average standard deviation of split frequencies: 0.004565
971000 -- (-995.122) (-973.966) [-994.024] (-980.279) * (-991.302) (-993.269) (-1008.922) [-982.589] -- 0:00:18
972000 -- [-985.392] (-986.511) (-990.528) (-996.256) * (-990.506) [-996.820] (-1009.171) (-985.363) -- 0:00:17
973000 -- (-978.027) (-982.521) (-993.894) [-982.325] * (-996.699) [-997.692] (-988.980) (-989.982) -- 0:00:17
974000 -- [-993.227] (-977.209) (-989.060) (-1002.909) * (-980.924) (-996.446) (-1012.461) [-982.126] -- 0:00:16
975000 -- (-1009.069) (-988.323) (-999.946) [-988.917] * (-997.122) (-994.464) [-993.703] (-987.939) -- 0:00:15
Average standard deviation of split frequencies: 0.004669
976000 -- (-990.592) (-998.614) (-990.329) [-992.028] * (-993.525) (-998.047) (-1001.600) [-987.495] -- 0:00:15
977000 -- (-983.756) (-1003.661) (-979.379) [-990.292] * (-1006.127) (-992.981) (-996.335) [-983.371] -- 0:00:14
978000 -- [-982.513] (-993.265) (-1000.159) (-991.316) * [-1011.416] (-992.698) (-1015.121) (-984.152) -- 0:00:13
979000 -- [-976.724] (-977.435) (-1002.160) (-986.750) * (-983.814) [-985.466] (-994.687) (-984.309) -- 0:00:13
980000 -- (-993.711) (-992.193) [-989.680] (-1000.942) * [-981.453] (-979.674) (-989.865) (-988.373) -- 0:00:12
Average standard deviation of split frequencies: 0.004695
981000 -- (-994.223) (-982.512) (-996.426) [-980.054] * (-989.780) (-1003.211) [-985.115] (-1008.061) -- 0:00:12
982000 -- (-982.381) (-990.776) [-985.423] (-999.805) * (-1000.977) (-995.936) (-986.140) [-988.975] -- 0:00:11
983000 -- (-988.701) (-1005.195) [-987.607] (-1001.239) * (-1002.329) (-1013.299) [-977.578] (-1000.750) -- 0:00:10
984000 -- [-986.700] (-988.682) (-987.836) (-997.993) * (-998.977) [-989.045] (-995.690) (-1014.743) -- 0:00:10
985000 -- [-991.890] (-990.308) (-1001.190) (-987.892) * [-994.178] (-991.547) (-1003.246) (-992.182) -- 0:00:09
Average standard deviation of split frequencies: 0.004701
986000 -- (-982.569) (-992.154) (-1000.007) [-995.285] * [-985.696] (-992.967) (-1008.188) (-993.128) -- 0:00:08
987000 -- [-981.095] (-985.759) (-986.420) (-982.090) * [-985.447] (-986.174) (-997.126) (-1004.636) -- 0:00:08
988000 -- (-993.880) (-1004.915) (-987.335) [-1001.315] * (-989.023) [-979.514] (-1001.263) (-999.048) -- 0:00:07
989000 -- (-995.528) (-992.599) (-983.450) [-992.645] * (-1005.612) (-990.136) (-1005.480) [-985.548] -- 0:00:06
990000 -- [-975.759] (-989.226) (-999.806) (-1004.013) * [-994.129] (-992.593) (-1003.963) (-979.523) -- 0:00:06
Average standard deviation of split frequencies: 0.004695
991000 -- [-989.358] (-987.662) (-993.355) (-988.942) * (-1013.906) [-980.877] (-984.504) (-987.891) -- 0:00:05
992000 -- [-993.197] (-990.724) (-989.828) (-986.882) * (-991.985) (-997.109) (-997.487) [-982.874] -- 0:00:05
993000 -- (-984.610) (-1004.273) [-985.613] (-993.059) * (-991.808) (-987.153) (-1001.567) [-981.646] -- 0:00:04
994000 -- [-986.628] (-983.872) (-985.678) (-990.618) * (-985.188) (-996.287) (-1007.251) [-994.552] -- 0:00:03
995000 -- [-990.105] (-1007.654) (-992.697) (-984.507) * (-1005.842) [-991.028] (-997.829) (-986.112) -- 0:00:03
Average standard deviation of split frequencies: 0.004843
996000 -- (-1000.019) (-986.637) [-979.502] (-991.758) * [-992.387] (-987.276) (-995.757) (-1008.413) -- 0:00:02
997000 -- (-985.823) (-990.575) (-992.581) [-982.269] * (-996.240) (-997.356) (-988.716) [-984.240] -- 0:00:01
998000 -- [-981.750] (-995.869) (-991.218) (-999.393) * (-987.074) (-991.529) [-985.041] (-988.756) -- 0:00:01
999000 -- (-995.134) (-979.568) (-1007.587) [-990.686] * (-986.146) (-1002.286) [-985.379] (-995.362) -- 0:00:00
1000000 -- (-1004.005) (-977.529) (-990.574) [-984.286] * [-989.071] (-1006.092) (-998.649) (-984.032) -- 0:00:00
Average standard deviation of split frequencies: 0.004857
Analysis completed in 10 mins 31 seconds
Analysis used 631.02 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -967.44
Likelihood of best state for "cold" chain of run 2 was -967.84
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
58.8 % ( 48 %) Dirichlet(Revmat{all})
72.1 % ( 57 %) Slider(Revmat{all})
34.5 % ( 32 %) Dirichlet(Pi{all})
34.8 % ( 30 %) Slider(Pi{all})
63.2 % ( 31 %) Multiplier(Alpha{1,2})
62.4 % ( 32 %) Multiplier(Alpha{3})
79.1 % ( 62 %) Slider(Pinvar{all})
66.7 % ( 67 %) ExtSPR(Tau{all},V{all})
52.8 % ( 56 %) ExtTBR(Tau{all},V{all})
66.3 % ( 66 %) NNI(Tau{all},V{all})
66.3 % ( 69 %) ParsSPR(Tau{all},V{all})
27.4 % ( 28 %) Multiplier(V{all})
75.2 % ( 81 %) Nodeslider(V{all})
25.8 % ( 32 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
59.0 % ( 42 %) Dirichlet(Revmat{all})
72.4 % ( 53 %) Slider(Revmat{all})
34.7 % ( 27 %) Dirichlet(Pi{all})
35.5 % ( 21 %) Slider(Pi{all})
64.0 % ( 35 %) Multiplier(Alpha{1,2})
62.6 % ( 38 %) Multiplier(Alpha{3})
78.5 % ( 58 %) Slider(Pinvar{all})
66.4 % ( 70 %) ExtSPR(Tau{all},V{all})
52.5 % ( 46 %) ExtTBR(Tau{all},V{all})
66.1 % ( 63 %) NNI(Tau{all},V{all})
66.4 % ( 66 %) ParsSPR(Tau{all},V{all})
27.4 % ( 17 %) Multiplier(V{all})
75.2 % ( 76 %) Nodeslider(V{all})
25.7 % ( 27 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.58 0.28 0.12
2 | 166747 0.60 0.32
3 | 166554 166793 0.62
4 | 166708 166573 166625
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.58 0.29 0.12
2 | 166645 0.60 0.31
3 | 166488 166920 0.62
4 | 166705 166542 166700
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -983.26
| 2 1 1 |
| 2 |
| 1 1 1 2 2 |
|2 2 1 1 2 2 2 2 2 1 |
| 2 * 1 1 21 1 |
| 2 1 1 1 2 2 1 2 1 2 2|
| 12 2 1 2 1 1 11 2 2 1 1 |
|1 2 * 2 1 21 2 11 2 11 211 2 22 1|
| 1 11 2 211221 2 1 2 22 1 12 |
| 1 1 1 2 122 |
| 1 2 * 21 2 2 2* |
| * 2 1 2 2 |
| 1 21 |
| 2 1 |
| 1 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -990.57
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -976.74 -1001.78
2 -976.55 -1004.49
--------------------------------------
TOTAL -976.64 -1003.87
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.374488 0.002746 0.274309 0.477513 0.369983 1501.00 1501.00 1.000
r(A<->C){all} 0.172963 0.001720 0.097354 0.257416 0.171189 707.62 778.09 1.002
r(A<->G){all} 0.154770 0.001519 0.084823 0.234113 0.152091 639.39 671.04 1.000
r(A<->T){all} 0.140046 0.001208 0.076996 0.208505 0.137739 763.21 773.16 1.000
r(C<->G){all} 0.087480 0.001068 0.029624 0.153119 0.084854 649.62 806.65 1.001
r(C<->T){all} 0.407633 0.003213 0.296509 0.518160 0.406145 460.00 498.51 1.002
r(G<->T){all} 0.037107 0.000395 0.003231 0.075987 0.033682 920.24 961.96 1.000
pi(A){all} 0.284076 0.000510 0.238309 0.326567 0.283879 1243.05 1262.48 1.000
pi(C){all} 0.199402 0.000397 0.161118 0.237035 0.198504 1110.52 1129.30 1.000
pi(G){all} 0.234942 0.000460 0.193709 0.276810 0.234443 1046.43 1127.18 1.000
pi(T){all} 0.281580 0.000505 0.238363 0.326381 0.281214 1032.38 1043.84 1.001
alpha{1,2} 1.046073 0.668743 0.169190 2.785717 0.799385 1086.66 1149.13 1.000
alpha{3} 1.588614 1.156432 0.216970 3.789392 1.314102 1166.45 1222.72 1.001
pinvar{all} 0.266395 0.019998 0.000152 0.494542 0.269121 1008.16 1035.16 1.002
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C1
2 -- C10
3 -- C11
4 -- C12
5 -- C13
6 -- C14
7 -- C15
8 -- C16
9 -- C17
10 -- C18
11 -- C19
12 -- C2
13 -- C20
14 -- C21
15 -- C22
16 -- C23
17 -- C3
18 -- C4
19 -- C5
20 -- C6
21 -- C7
22 -- C8
23 -- C9
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
-----------------------------
1 -- .**********************
2 -- .*.....................
3 -- ..*....................
4 -- ...*...................
5 -- ....*..................
6 -- .....*.................
7 -- ......*................
8 -- .......*...............
9 -- ........*..............
10 -- .........*.............
11 -- ..........*............
12 -- ...........*...........
13 -- ............*..........
14 -- .............*.........
15 -- ..............*........
16 -- ...............*.......
17 -- ................*......
18 -- .................*.....
19 -- ..................*....
20 -- ...................*...
21 -- ....................*..
22 -- .....................*.
23 -- ......................*
24 -- ..**.**..****.*.*.*....
25 -- ..**.**..****.*.****...
26 -- .....**...........*....
27 -- .................*.*...
28 -- ..*......****.*.*......
29 -- ...*.**...........*....
30 -- .........****.*.*......
31 -- .....*............*....
32 -- ......*...........*....
33 -- .....**................
34 -- ...........*....*......
35 -- .........****...*......
36 -- .........*..*..........
37 -- ...........**..........
38 -- .........*....*........
39 -- ............*...*......
40 -- ............*.*........
41 -- .........**............
42 -- .........***..*.*......
43 -- ..............*.*......
44 -- .........*......*......
45 -- ..........*.....*......
46 -- ..........*.*..........
47 -- .........*.*...........
48 -- ..........**...........
49 -- ..........*...*........
50 -- ..........***.*.*......
51 -- .........*.**.*.*......
52 -- .........****.*........
-----------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
24 3002 1.000000 0.000000 1.000000 1.000000 2
25 3002 1.000000 0.000000 1.000000 1.000000 2
26 3002 1.000000 0.000000 1.000000 1.000000 2
27 2988 0.995336 0.000942 0.994670 0.996003 2
28 2863 0.953698 0.007066 0.948701 0.958694 2
29 2786 0.928048 0.001884 0.926716 0.929380 2
30 2755 0.917722 0.002355 0.916056 0.919387 2
31 1038 0.345769 0.000942 0.345103 0.346436 2
32 985 0.328115 0.005182 0.324450 0.331779 2
33 979 0.326116 0.004240 0.323118 0.329114 2
34 368 0.122585 0.006595 0.117921 0.127249 2
35 345 0.114923 0.001413 0.113924 0.115923 2
36 345 0.114923 0.001413 0.113924 0.115923 2
37 336 0.111925 0.015075 0.101266 0.122585 2
38 335 0.111592 0.007066 0.106596 0.116589 2
39 335 0.111592 0.011777 0.103264 0.119920 2
40 333 0.110926 0.011777 0.102598 0.119254 2
41 333 0.110926 0.000471 0.110593 0.111259 2
42 332 0.110593 0.007537 0.105263 0.115923 2
43 330 0.109927 0.010364 0.102598 0.117255 2
44 328 0.109260 0.003769 0.106596 0.111925 2
45 327 0.108927 0.001413 0.107928 0.109927 2
46 327 0.108927 0.000471 0.108594 0.109260 2
47 321 0.106929 0.009893 0.099933 0.113924 2
48 315 0.104930 0.015546 0.093937 0.115923 2
49 314 0.104597 0.000000 0.104597 0.104597 2
50 313 0.104264 0.003298 0.101932 0.106596 2
51 310 0.103264 0.000942 0.102598 0.103931 2
52 296 0.098601 0.009422 0.091939 0.105263 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.002312 0.000005 0.000001 0.006744 0.001609 1.000 2
length{all}[2] 0.002246 0.000005 0.000000 0.006752 0.001524 1.000 2
length{all}[3] 0.002584 0.000007 0.000000 0.008236 0.001726 1.001 2
length{all}[4] 0.097311 0.000464 0.059328 0.140370 0.095265 1.000 2
length{all}[5] 0.002283 0.000005 0.000000 0.006776 0.001596 1.000 2
length{all}[6] 0.002354 0.000006 0.000000 0.006858 0.001631 1.001 2
length{all}[7] 0.002391 0.000006 0.000001 0.007258 0.001652 1.000 2
length{all}[8] 0.002289 0.000005 0.000000 0.006737 0.001576 1.001 2
length{all}[9] 0.002219 0.000005 0.000001 0.006719 0.001492 1.000 2
length{all}[10] 0.002367 0.000006 0.000000 0.007348 0.001606 1.000 2
length{all}[11] 0.002267 0.000006 0.000000 0.006847 0.001547 1.000 2
length{all}[12] 0.002321 0.000006 0.000000 0.007156 0.001570 1.000 2
length{all}[13] 0.002372 0.000006 0.000000 0.007346 0.001669 1.000 2
length{all}[14] 0.002263 0.000005 0.000001 0.006624 0.001567 1.000 2
length{all}[15] 0.002310 0.000006 0.000000 0.007009 0.001563 1.001 2
length{all}[16] 0.002340 0.000006 0.000001 0.007151 0.001612 1.000 2
length{all}[17] 0.002330 0.000005 0.000002 0.007003 0.001591 1.000 2
length{all}[18] 0.008546 0.000028 0.000183 0.018736 0.007628 1.000 2
length{all}[19] 0.002418 0.000006 0.000000 0.007041 0.001720 1.000 2
length{all}[20] 0.030819 0.000095 0.012225 0.049306 0.029663 1.000 2
length{all}[21] 0.002309 0.000006 0.000000 0.006867 0.001574 1.000 2
length{all}[22] 0.002334 0.000006 0.000001 0.007132 0.001607 1.000 2
length{all}[23] 0.002245 0.000005 0.000000 0.006740 0.001499 1.000 2
length{all}[24] 0.026142 0.000098 0.009799 0.046716 0.024791 1.001 2
length{all}[25] 0.058779 0.000227 0.032485 0.090022 0.057230 1.000 2
length{all}[26] 0.031288 0.000115 0.012745 0.052965 0.030045 1.000 2
length{all}[27] 0.016613 0.000063 0.003135 0.031817 0.015411 1.000 2
length{all}[28] 0.010891 0.000041 0.000134 0.023057 0.009834 1.000 2
length{all}[29] 0.013831 0.000063 0.000726 0.028970 0.012478 1.000 2
length{all}[30] 0.004648 0.000011 0.000131 0.011045 0.003936 1.000 2
length{all}[31] 0.002396 0.000006 0.000001 0.007288 0.001707 1.000 2
length{all}[32] 0.002479 0.000007 0.000006 0.007585 0.001680 0.999 2
length{all}[33] 0.002566 0.000007 0.000002 0.007444 0.001809 1.000 2
length{all}[34] 0.002183 0.000006 0.000021 0.007112 0.001519 0.997 2
length{all}[35] 0.002298 0.000005 0.000002 0.006903 0.001634 0.997 2
length{all}[36] 0.002392 0.000006 0.000011 0.007137 0.001531 1.002 2
length{all}[37] 0.002395 0.000007 0.000001 0.006937 0.001645 0.999 2
length{all}[38] 0.002355 0.000006 0.000009 0.006727 0.001499 0.997 2
length{all}[39] 0.002076 0.000005 0.000008 0.006911 0.001408 1.001 2
length{all}[40] 0.002247 0.000005 0.000009 0.006278 0.001524 1.000 2
length{all}[41] 0.002357 0.000006 0.000007 0.006529 0.001600 0.997 2
length{all}[42] 0.002332 0.000005 0.000010 0.006832 0.001574 1.012 2
length{all}[43] 0.002261 0.000005 0.000016 0.006765 0.001615 0.997 2
length{all}[44] 0.002540 0.000005 0.000004 0.006789 0.001885 0.997 2
length{all}[45] 0.002172 0.000005 0.000007 0.006865 0.001397 1.000 2
length{all}[46] 0.002379 0.000005 0.000003 0.006967 0.001757 1.000 2
length{all}[47] 0.002388 0.000005 0.000003 0.006532 0.001679 1.001 2
length{all}[48] 0.002554 0.000006 0.000001 0.007746 0.001814 0.999 2
length{all}[49] 0.002274 0.000005 0.000005 0.007088 0.001567 1.000 2
length{all}[50] 0.002248 0.000004 0.000006 0.006276 0.001612 1.002 2
length{all}[51] 0.002393 0.000007 0.000000 0.006805 0.001714 0.997 2
length{all}[52] 0.002366 0.000005 0.000006 0.006670 0.001685 0.997 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.004857
Maximum standard deviation of split frequencies = 0.015546
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.012
Clade credibility values:
/---------------------------------------------------------------------- C1 (1)
|
|---------------------------------------------------------------------- C10 (2)
|
|---------------------------------------------------------------------- C13 (5)
|
|---------------------------------------------------------------------- C16 (8)
|
|---------------------------------------------------------------------- C17 (9)
|
|---------------------------------------------------------------------- C21 (14)
|
|---------------------------------------------------------------------- C23 (16)
|
|---------------------------------------------------------------------- C7 (21)
|
|---------------------------------------------------------------------- C8 (22)
|
|---------------------------------------------------------------------- C9 (23)
+
| /---------------------------- C11 (3)
| |
| | /-------------- C18 (10)
| | |
| /------95-----+ |-------------- C19 (11)
| | | |
| | | |-------------- C2 (12)
| | \------92-----+
| | |-------------- C20 (13)
| | |
| /-----100-----+ |-------------- C22 (15)
| | | |
| | | \-------------- C3 (17)
| | |
| | | /---------------------------- C12 (4)
| | | |
| | \------93-----+ /-------------- C14 (6)
\-----100-----+ | |
| \-----100-----+-------------- C15 (7)
| |
| \-------------- C5 (19)
|
| /-------------- C4 (18)
\-------------------100-------------------+
\-------------- C6 (20)
Phylogram (based on average branch lengths):
/- C1 (1)
|
|- C10 (2)
|
|- C13 (5)
|
|- C16 (8)
|
|- C17 (9)
|
|- C21 (14)
|
|- C23 (16)
|
|- C7 (21)
|
|- C8 (22)
|
|- C9 (23)
+
| /- C11 (3)
| |
| | / C18 (10)
| | |
| /--+ | C19 (11)
| | | |
| | | | C2 (12)
| | \-+
| | | C20 (13)
| | |
| /---------+ | C22 (15)
| | | |
| | | \ C3 (17)
| | |
| | | /------------------------------------ C12 (4)
| | | |
| | \---+ / C14 (6)
\--------------------+ | |
| \-----------+ C15 (7)
| |
| \ C5 (19)
|
| /--- C4 (18)
\-----+
\----------- C6 (20)
|-----------------| 0.050 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3002 trees sampled):
50 % credible set contains 1501 trees
90 % credible set contains 2702 trees
95 % credible set contains 2852 trees
99 % credible set contains 2972 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Wed Nov 02 20:11:07 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_NA_YP_009824984_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.06 sec, SCORE=1000, Nseq=23, Len=113
C1 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C2 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C3 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C4 -----MEIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C5 -----MDIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRIGYCRVPLKA
C6 -----MEIWHVSDAWLRRTRDFGVTRLEDFCFQFNYTQPRVGYCRVPLKA
C7 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C8 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C9 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C10 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C11 -----MEIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C12 -----MEIWHVSDAWLRNTRDFGVTRLEDFCFQFNYSQPRVGYCRVPLKA
C13 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C14 -----MDIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRIGYCRVPLKA
C15 -----MDIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRIGYCRVPLKA
C16 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C17 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C18 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C19 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C20 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C21 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
C22 -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKA
C23 MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKA
** *******.****** *********** ***:*********
C1 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C2 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C3 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C4 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVQQAVGKLVEEAVD
C5 WCSNQGKFAAQFTLKS-CEKSGQEIFITSFTAYDKTVKKAVSKLVEEAVD
C6 WCSNQGKFAAQFTLKS-CEKSGHPKFITSFTAYGKTVQQAVSKLVEEAVD
C7 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C8 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C9 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C10 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C11 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C12 WCSNQGKFAAQFTLKSKPADKGQEKFITSFTAYGKTVKQAVSKLVEEAVD
C13 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C14 WCSNQGKFAAQFTLKS-CEKSGQEIFITSFTAYDKTVKKAVSKLVEEAVD
C15 WCSNQGKFAAQFTLKS-CEKSGQEIFITSFTAYDKTVKKAVSKLVEEAVD
C16 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C17 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C18 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C19 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C20 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C21 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
C22 WCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAAD
C23 WCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVD
**************** . *: ********.:**::**.******.*
C1 FILFRATQLERNV
C2 FIIWRATQLERNV
C3 FIIWRATQLERNV
C4 FILFRALLLERNV
C5 FIIWRATQLERYV
C6 FILFRALLLERNV
C7 FILFRATQLERNV
C8 FILFRATQLERNV
C9 FILFRATQLERNV
C10 FILFRATQLERNV
C11 FIIWRATQLERNV
C12 FIIWRATQLERNV
C13 FILFRATQLERNV
C14 FIIWRATQLERYV
C15 FIIWRATQLERYV
C16 FILFRATQLERNV
C17 FILFRATQLERNV
C18 FIIWRATQLERNV
C19 FIIWRATQLERNV
C20 FIIWRATQLERNV
C21 FILFRATQLERNV
C22 FIIWRATQLERNV
C23 FILFRATQLERNV
**::** *** *
-- Starting log on Thu Nov 03 00:06:56 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A59_NA_YP_009824984_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/codeml,A59_NA_YP_009824984_1_NA_USA_Unknown_Murine_coronavirus.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C1 339 sites
reading seq# 2 C2 339 sites
reading seq# 3 C3 339 sites
reading seq# 4 C4 339 sites
reading seq# 5 C5 339 sites
reading seq# 6 C6 339 sites
reading seq# 7 C7 339 sites
reading seq# 8 C8 339 sites
reading seq# 9 C9 339 sites
reading seq#10 C10 339 sites
reading seq#11 C11 339 sites
reading seq#12 C12 339 sites
reading seq#13 C13 339 sites
reading seq#14 C14 339 sites
reading seq#15 C15 339 sites
reading seq#16 C16 339 sites
reading seq#17 C17 339 sites
reading seq#18 C18 339 sites
reading seq#19 C19 339 sites
reading seq#20 C20 339 sites
reading seq#21 C21 339 sites
reading seq#22 C22 339 sites
reading seq#23 C23 339 sitesns = 23 ls = 339
Reading sequences, sequential format..
Reading seq # 1: C1
Reading seq # 2: C2
Reading seq # 3: C3
Reading seq # 4: C4
Reading seq # 5: C5
Reading seq # 6: C6
Reading seq # 7: C7
Reading seq # 8: C8
Reading seq # 9: C9
Reading seq #10: C10
Reading seq #11: C11
Reading seq #12: C12
Reading seq #13: C13
Reading seq #14: C14
Reading seq #15: C15
Reading seq #16: C16
Reading seq #17: C17
Reading seq #18: C18
Reading seq #19: C19
Reading seq #20: C20
Reading seq #21: C21
Reading seq #22: C22
Reading seq #23: C23
Sites with gaps or missing data are removed.
3 ambiguity characters in seq. 1
18 ambiguity characters in seq. 2
18 ambiguity characters in seq. 3
18 ambiguity characters in seq. 4
18 ambiguity characters in seq. 5
18 ambiguity characters in seq. 6
3 ambiguity characters in seq. 7
3 ambiguity characters in seq. 8
3 ambiguity characters in seq. 9
3 ambiguity characters in seq. 10
18 ambiguity characters in seq. 11
15 ambiguity characters in seq. 12
3 ambiguity characters in seq. 13
18 ambiguity characters in seq. 14
18 ambiguity characters in seq. 15
3 ambiguity characters in seq. 16
3 ambiguity characters in seq. 17
18 ambiguity characters in seq. 18
18 ambiguity characters in seq. 19
18 ambiguity characters in seq. 20
3 ambiguity characters in seq. 21
18 ambiguity characters in seq. 22
3 ambiguity characters in seq. 23
6 sites are removed. 1 2 3 4 5 67
Sequences read..
Counting site patterns.. 0:00
Compressing, 89 patterns at 107 / 107 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 89 patterns at 107 / 107 sites (100.0%), 0:00
Counting codons..
2024 bytes for distance
86864 bytes for conP
7832 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(1, 10, 13, 16, 17, 21, 23, 7, 8, 9, (((11, (18, 19, 2, 20, 22, 3)), (12, (14, 15, 5))), (4, 6))); MP score: 86
347456 bytes for conP, adjusted
0.020641 0.049557 0.090498 0.052179 0.081922 0.066096 0.011566 0.054513 0.055163 0.106217 0.037006 0.057335 0.022563 0.013009 0.046953 0.107416 0.101309 0.033414 0.012685 0.030823 0.059667 0.038633 0.084138 0.035123 0.058352 0.104587 0.064440 0.023967 0.109387 0.050877 0.300000 0.664551 0.350135
ntime & nrate & np: 30 2 33
Bounds (np=33):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 13.127865
np = 33
lnL0 = -1134.923126
Iterating by ming2
Initial: fx= 1134.923126
x= 0.02064 0.04956 0.09050 0.05218 0.08192 0.06610 0.01157 0.05451 0.05516 0.10622 0.03701 0.05734 0.02256 0.01301 0.04695 0.10742 0.10131 0.03341 0.01268 0.03082 0.05967 0.03863 0.08414 0.03512 0.05835 0.10459 0.06444 0.02397 0.10939 0.05088 0.30000 0.66455 0.35013
1 h-m-p 0.0000 0.0001 758.5537 ++ 1079.339428 m 0.0001 38 | 1/33
2 h-m-p 0.0000 0.0000 672.5873 ++ 1076.522283 m 0.0000 74 | 2/33
3 h-m-p 0.0000 0.0000 6010.0418 ++ 1075.670580 m 0.0000 110 | 3/33
4 h-m-p 0.0000 0.0000 4002.2903 ++ 1061.631719 m 0.0000 146 | 4/33
5 h-m-p 0.0000 0.0000 1902.2179 ++ 1043.054377 m 0.0000 182 | 5/33
6 h-m-p 0.0000 0.0000 2471.4928 ++ 1038.760541 m 0.0000 218 | 6/33
7 h-m-p 0.0000 0.0000 34244.6984 ++ 1013.818419 m 0.0000 254 | 7/33
8 h-m-p 0.0000 0.0000 1629.8813 ++ 1010.184664 m 0.0000 290 | 8/33
9 h-m-p 0.0000 0.0000 441.3958 ++ 1007.566581 m 0.0000 326 | 9/33
10 h-m-p 0.0000 0.0000 267.3704 ++ 1006.935255 m 0.0000 362 | 10/33
11 h-m-p 0.0000 0.0000 1007.7713 ++ 1004.193013 m 0.0000 398 | 11/33
12 h-m-p 0.0000 0.0000 1213.7027 ++ 1002.595231 m 0.0000 434 | 12/33
13 h-m-p 0.0000 0.0000 9426.5451 ++ 999.841861 m 0.0000 470 | 13/33
14 h-m-p 0.0000 0.0000 362.9535 ++ 998.358585 m 0.0000 506 | 14/33
15 h-m-p 0.0000 0.0001 783.7434 ++ 989.018000 m 0.0001 542 | 15/33
16 h-m-p 0.0000 0.0000 3653.3572 ++ 984.968117 m 0.0000 578 | 16/33
17 h-m-p 0.0000 0.0000 769.6305 ++ 980.925395 m 0.0000 614 | 17/33
18 h-m-p 0.0000 0.0000 3677.0841 ++ 980.619398 m 0.0000 650 | 18/33
19 h-m-p 0.0000 0.0000 573.0943 ++ 979.798491 m 0.0000 686 | 19/33
20 h-m-p 0.0000 0.0000 386.9917 ++ 979.584623 m 0.0000 722 | 20/33
21 h-m-p 0.0000 0.0032 54.1518 ++++ 970.619043 m 0.0032 760 | 20/33
22 h-m-p 0.0000 0.0000 3.5098
h-m-p: 9.04061641e-18 4.52030821e-17 3.50977848e+00 970.619043
.. | 20/33
23 h-m-p 0.0000 0.0008 287.6945 +++CYYYCYCCC 931.907913 8 0.0008 845 | 20/33
24 h-m-p 0.0001 0.0007 472.1812 +YCCC 922.550091 3 0.0004 887 | 20/33
25 h-m-p 0.0002 0.0012 105.0132 YCYCCC 919.523186 5 0.0006 931 | 20/33
26 h-m-p 0.0002 0.0010 193.5048 +YYCCC 913.774521 4 0.0007 974 | 20/33
27 h-m-p 0.0004 0.0020 65.6627 CCCC 912.831579 3 0.0007 1016 | 20/33
28 h-m-p 0.0006 0.0076 71.9635 +YYC 910.421945 2 0.0021 1055 | 20/33
29 h-m-p 0.0026 0.0129 50.0002 CCC 909.154131 2 0.0023 1095 | 20/33
30 h-m-p 0.0012 0.0059 27.0524 CCCC 908.732535 3 0.0020 1137 | 20/33
31 h-m-p 0.0020 0.0208 26.9195 YCCC 908.611804 3 0.0008 1178 | 20/33
32 h-m-p 0.0022 0.0117 9.7875 YCC 908.577009 2 0.0010 1217 | 20/33
33 h-m-p 0.0039 0.1021 2.5176 YC 908.568176 1 0.0019 1254 | 20/33
34 h-m-p 0.0116 0.6274 0.4148 +YCC 908.279672 2 0.0915 1294 | 20/33
35 h-m-p 0.0033 0.0433 11.4168 +YCYCCC 903.617259 5 0.0272 1352 | 20/33
36 h-m-p 0.0016 0.0080 22.2790 YCC 903.407603 2 0.0011 1391 | 20/33
37 h-m-p 0.0931 0.8446 0.2610 +CYYYYYC 901.046478 6 0.6004 1435 | 20/33
38 h-m-p 1.6000 8.0000 0.0442 YYCC 900.757582 3 0.5477 1488 | 20/33
39 h-m-p 0.3271 2.7248 0.0741 YCCC 900.610275 3 0.7689 1542 | 20/33
40 h-m-p 1.6000 8.0000 0.0257 CCC 900.563481 2 1.5476 1595 | 20/33
41 h-m-p 1.6000 8.0000 0.0152 CC 900.547459 1 2.4264 1646 | 20/33
42 h-m-p 1.6000 8.0000 0.0088 CC 900.543274 1 1.9958 1697 | 20/33
43 h-m-p 1.6000 8.0000 0.0018 CC 900.542921 1 1.3183 1748 | 20/33
44 h-m-p 1.6000 8.0000 0.0003 Y 900.542915 0 1.1104 1797 | 20/33
45 h-m-p 1.6000 8.0000 0.0000 C 900.542915 0 1.3753 1846 | 20/33
46 h-m-p 1.6000 8.0000 0.0000 C 900.542915 0 1.3412 1895 | 20/33
47 h-m-p 1.6000 8.0000 0.0000 C 900.542915 0 1.6000 1944 | 20/33
48 h-m-p 1.6000 8.0000 0.0000 Y 900.542915 0 1.0079 1993 | 20/33
49 h-m-p 1.6000 8.0000 0.0000 ---C 900.542915 0 0.0063 2045
Out..
lnL = -900.542915
2046 lfun, 6138 eigenQcodon, 122760 P(t)
end of tree file.
Time used: 0:38
Model 2: PositiveSelection
TREE # 1
(1, 10, 13, 16, 17, 21, 23, 7, 8, 9, (((11, (18, 19, 2, 20, 22, 3)), (12, (14, 15, 5))), (4, 6))); MP score: 86
0.019627 0.011675 0.098814 0.087206 0.061137 0.086989 0.032776 0.098065 0.085617 0.097733 0.018509 0.107399 0.075053 0.043047 0.066578 0.067906 0.095788 0.033300 0.027662 0.038880 0.098202 0.047208 0.107423 0.093874 0.079176 0.036518 0.105870 0.028260 0.099546 0.076689 1.520357 1.309403 0.563161 0.154880 1.370192
ntime & nrate & np: 30 3 35
Bounds (np=35):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 8.129020
np = 35
lnL0 = -1085.902893
Iterating by ming2
Initial: fx= 1085.902893
x= 0.01963 0.01167 0.09881 0.08721 0.06114 0.08699 0.03278 0.09807 0.08562 0.09773 0.01851 0.10740 0.07505 0.04305 0.06658 0.06791 0.09579 0.03330 0.02766 0.03888 0.09820 0.04721 0.10742 0.09387 0.07918 0.03652 0.10587 0.02826 0.09955 0.07669 1.52036 1.30940 0.56316 0.15488 1.37019
1 h-m-p 0.0000 0.0002 1004.6418 +++ 1025.785241 m 0.0002 41 | 1/35
2 h-m-p 0.0000 0.0001 427.7394 ++ 1010.874202 m 0.0001 79 | 2/35
3 h-m-p 0.0000 0.0000 2343.0180 ++ 998.394612 m 0.0000 117 | 3/35
4 h-m-p 0.0000 0.0000 687.8278 ++ 991.345101 m 0.0000 155 | 4/35
5 h-m-p 0.0000 0.0001 132.6556 ++ 990.043087 m 0.0001 193 | 5/35
6 h-m-p 0.0000 0.0001 125.4041 ++ 986.443936 m 0.0001 231 | 6/35
7 h-m-p 0.0000 0.0000 3211.7229 ++ 984.186532 m 0.0000 269 | 7/35
8 h-m-p 0.0000 0.0000 2156.3764 ++ 979.422933 m 0.0000 307 | 8/35
9 h-m-p 0.0000 0.0002 427.3051 ++ 965.626849 m 0.0002 345 | 9/35
10 h-m-p 0.0000 0.0001 570.0215 ++ 959.490598 m 0.0001 383 | 10/35
11 h-m-p 0.0000 0.0000 162443.6098 ++ 946.527048 m 0.0000 421 | 11/35
12 h-m-p 0.0000 0.0000 41206.7311 ++ 945.407992 m 0.0000 459 | 12/35
13 h-m-p 0.0000 0.0000 3097.1747 ++ 944.486730 m 0.0000 497 | 13/35
14 h-m-p 0.0000 0.0000 3247.9528 ++ 944.358353 m 0.0000 535 | 14/35
15 h-m-p 0.0000 0.0000 2424.3296 ++ 940.032119 m 0.0000 573 | 15/35
16 h-m-p 0.0000 0.0000 1559.4368 ++ 939.196135 m 0.0000 611 | 16/35
17 h-m-p 0.0000 0.0000 1364.3731 ++ 939.081152 m 0.0000 649 | 17/35
18 h-m-p 0.0000 0.0000 836.9034 ++ 939.045037 m 0.0000 687 | 18/35
19 h-m-p 0.0000 0.0000 588.3537 ++ 938.937011 m 0.0000 725 | 19/35
20 h-m-p 0.0000 0.0001 247.2235 ++ 937.672646 m 0.0001 763 | 20/35
21 h-m-p 0.0003 0.0087 33.3890 +++ 928.668592 m 0.0087 802 | 20/35
22 h-m-p 0.0000 0.0000 36.0390
h-m-p: 1.76819174e-19 8.84095872e-19 3.60390401e+01 928.668592
.. | 20/35
23 h-m-p 0.0000 0.0004 174.0315 ++YCYYCCC 920.735605 6 0.0004 887 | 20/35
24 h-m-p 0.0001 0.0006 519.0735 +YCYC 913.186440 3 0.0003 930 | 20/35
25 h-m-p 0.0002 0.0012 95.3192 +YYCCC 909.369964 4 0.0009 975 | 20/35
26 h-m-p 0.0007 0.0034 68.0905 YCCC 907.300669 3 0.0014 1018 | 20/35
27 h-m-p 0.0006 0.0028 57.0862 CYC 906.869711 2 0.0005 1059 | 20/35
28 h-m-p 0.0014 0.0133 20.4629 YCCC 906.378584 3 0.0032 1102 | 20/35
29 h-m-p 0.0022 0.0268 28.6607 +YYCCC 904.971929 4 0.0077 1147 | 20/35
30 h-m-p 0.0019 0.0098 117.0679 YCCC 902.937774 3 0.0032 1190 | 20/35
31 h-m-p 0.0007 0.0034 124.7075 YCCCC 901.825738 4 0.0015 1235 | 20/35
32 h-m-p 0.0018 0.0088 11.8681 YCC 901.778541 2 0.0011 1276 | 20/35
33 h-m-p 0.0042 0.1042 3.2037 YC 901.768444 1 0.0021 1315 | 20/35
34 h-m-p 0.0066 0.7093 1.0056 +YCC 901.715215 2 0.0443 1357 | 20/35
35 h-m-p 0.0050 0.2350 8.9138 +YCCC 901.259487 3 0.0394 1401 | 20/35
36 h-m-p 0.1381 0.6903 1.5435 YCCCC 900.641190 4 0.2578 1446 | 20/35
37 h-m-p 0.6865 3.4327 0.3414 CYC 900.358824 2 0.7578 1487 | 20/35
38 h-m-p 0.7108 3.5541 0.2097 CCCC 900.273581 3 0.7598 1546 | 20/35
39 h-m-p 1.6000 8.0000 0.0762 YC 900.241787 1 1.1147 1600 | 20/35
40 h-m-p 1.0980 8.0000 0.0773 C 900.234885 0 1.0712 1653 | 20/35
41 h-m-p 1.6000 8.0000 0.0465 CC 900.231128 1 2.1128 1708 | 20/35
42 h-m-p 1.6000 8.0000 0.0575 CC 900.227861 1 2.4768 1763 | 20/35
43 h-m-p 1.2231 8.0000 0.1164 +YC 900.220108 1 3.1560 1818 | 20/35
44 h-m-p 1.6000 8.0000 0.1670 YCCC 900.205977 3 3.4553 1876 | 20/35
45 h-m-p 1.6000 8.0000 0.0507 YC 900.203705 1 0.9395 1930 | 20/35
46 h-m-p 0.1131 8.0000 0.4207 +CCC 900.200442 2 0.8236 1988 | 20/35
47 h-m-p 1.4387 8.0000 0.2408 CC 900.197678 1 1.4737 2043 | 20/35
48 h-m-p 1.6000 8.0000 0.1310 C 900.195230 0 1.6000 2096 | 20/35
49 h-m-p 0.5615 8.0000 0.3733 CCC 900.193907 2 0.8842 2153 | 20/35
50 h-m-p 1.2904 8.0000 0.2558 CC 900.192540 1 1.1895 2208 | 20/35
51 h-m-p 1.6000 8.0000 0.1577 YC 900.190950 1 3.9413 2262 | 20/35
52 h-m-p 1.5390 8.0000 0.4038 YC 900.190446 1 0.8638 2316 | 20/35
53 h-m-p 1.3825 8.0000 0.2523 YC 900.190039 1 0.7882 2370 | 20/35
54 h-m-p 0.7038 8.0000 0.2826 +C 900.189612 0 2.4951 2424 | 20/35
55 h-m-p 1.6000 8.0000 0.2377 C 900.189348 0 2.2198 2477 | 20/35
56 h-m-p 1.0259 8.0000 0.5142 C 900.189186 0 1.2182 2530 | 20/35
57 h-m-p 1.6000 8.0000 0.3154 YC 900.189105 1 2.7729 2584 | 20/35
58 h-m-p 1.6000 8.0000 0.2985 C 900.189055 0 2.2832 2637 | 20/35
59 h-m-p 1.6000 8.0000 0.3355 Y 900.189035 0 3.0622 2690 | 20/35
60 h-m-p 1.6000 8.0000 0.3147 C 900.189027 0 2.1589 2743 | 20/35
61 h-m-p 1.6000 8.0000 0.3892 C 900.189024 0 2.2360 2796 | 20/35
62 h-m-p 1.6000 8.0000 0.3649 C 900.189022 0 1.9658 2849 | 20/35
63 h-m-p 1.6000 8.0000 0.3730 C 900.189021 0 2.3398 2902 | 20/35
64 h-m-p 1.6000 8.0000 0.3477 C 900.189021 0 2.4913 2955 | 20/35
65 h-m-p 1.6000 8.0000 0.3333 C 900.189021 0 2.4856 3008 | 20/35
66 h-m-p 1.6000 8.0000 0.3160 C 900.189021 0 2.5336 3061 | 20/35
67 h-m-p 1.6000 8.0000 0.4292 Y 900.189021 0 3.2367 3114 | 20/35
68 h-m-p 1.6000 8.0000 0.5248 C 900.189021 0 2.1349 3167 | 20/35
69 h-m-p 1.6000 8.0000 0.4569 Y 900.189021 0 2.6294 3220 | 20/35
70 h-m-p 1.6000 8.0000 0.4344 C 900.189021 0 0.4879 3273 | 20/35
71 h-m-p 1.6000 8.0000 0.1047 Y 900.189021 0 1.6000 3326 | 20/35
72 h-m-p 1.6000 8.0000 0.0173 ---------------C 900.189021 0 0.0000 3394 | 20/35
73 h-m-p 0.0160 8.0000 0.0013 -------------.. | 20/35
74 h-m-p 0.0160 8.0000 0.0005 --Y 900.189021 0 0.0003 3513
Out..
lnL = -900.189021
3514 lfun, 14056 eigenQcodon, 316260 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -908.227809 S = -850.848566 -75.247997
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 89 patterns 2:16
did 20 / 89 patterns 2:16
did 30 / 89 patterns 2:17
did 40 / 89 patterns 2:17
did 50 / 89 patterns 2:17
did 60 / 89 patterns 2:17
did 70 / 89 patterns 2:17
did 80 / 89 patterns 2:17
did 89 / 89 patterns 2:17end of tree file.
Time used: 2:17
Model 7: beta
TREE # 1
(1, 10, 13, 16, 17, 21, 23, 7, 8, 9, (((11, (18, 19, 2, 20, 22, 3)), (12, (14, 15, 5))), (4, 6))); MP score: 86
0.050956 0.032986 0.023650 0.018520 0.085659 0.013612 0.064351 0.083431 0.090504 0.033642 0.063145 0.074030 0.063906 0.023189 0.089827 0.094968 0.062121 0.040007 0.049937 0.107089 0.041452 0.082620 0.068319 0.056327 0.062468 0.090855 0.065170 0.036105 0.035916 0.069712 1.580129 1.017465 1.466628
ntime & nrate & np: 30 1 33
Bounds (np=33):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 9.826069
np = 33
lnL0 = -1073.734778
Iterating by ming2
Initial: fx= 1073.734778
x= 0.05096 0.03299 0.02365 0.01852 0.08566 0.01361 0.06435 0.08343 0.09050 0.03364 0.06314 0.07403 0.06391 0.02319 0.08983 0.09497 0.06212 0.04001 0.04994 0.10709 0.04145 0.08262 0.06832 0.05633 0.06247 0.09085 0.06517 0.03610 0.03592 0.06971 1.58013 1.01746 1.46663
1 h-m-p 0.0000 0.0002 620.1657 ++ 1024.952344 m 0.0002 38 | 1/33
2 h-m-p 0.0000 0.0000 708.6826 ++ 1016.109118 m 0.0000 74 | 2/33
3 h-m-p 0.0000 0.0000 1270.5282 ++ 1006.709498 m 0.0000 110 | 3/33
4 h-m-p 0.0000 0.0000 140.1849 ++ 1006.288589 m 0.0000 146 | 4/33
5 h-m-p 0.0000 0.0003 246.2915 +++ 989.079914 m 0.0003 183 | 5/33
6 h-m-p 0.0000 0.0000 2746.2762 ++ 987.944943 m 0.0000 219 | 6/33
7 h-m-p 0.0000 0.0000 13797.2809 ++ 980.771684 m 0.0000 255 | 7/33
8 h-m-p 0.0000 0.0000 379812.0288 ++ 978.904745 m 0.0000 291 | 8/33
9 h-m-p 0.0000 0.0001 628.0687 ++ 969.032440 m 0.0001 327 | 9/33
10 h-m-p 0.0000 0.0000 2896.3999 ++ 964.831679 m 0.0000 363 | 10/33
11 h-m-p 0.0000 0.0001 648.9332 ++ 956.555933 m 0.0001 399 | 11/33
12 h-m-p 0.0000 0.0000 859.1497 ++ 951.982536 m 0.0000 435 | 12/33
13 h-m-p 0.0000 0.0000 2357.9582 ++ 951.765090 m 0.0000 471 | 13/33
14 h-m-p 0.0000 0.0000 589.1587 ++ 950.051723 m 0.0000 507 | 14/33
15 h-m-p 0.0000 0.0000 12017.2198 ++ 940.073345 m 0.0000 543 | 15/33
16 h-m-p 0.0000 0.0000 1440.1120 ++ 938.976193 m 0.0000 579 | 16/33
17 h-m-p 0.0000 0.0000 229.1334 ++ 937.036513 m 0.0000 615 | 17/33
18 h-m-p 0.0000 0.0000 4980.6962 ++ 936.577384 m 0.0000 651 | 18/33
19 h-m-p 0.0000 0.0000 309.2473 ++ 936.489702 m 0.0000 687 | 19/33
20 h-m-p 0.0000 0.0000 466.9183 ++ 935.260925 m 0.0000 723 | 20/33
21 h-m-p 0.0002 0.0251 32.2756 +++YYYYYCYCYC 925.961897 10 0.0161 774 | 20/33
22 h-m-p 0.0179 0.0896 1.8028 YCYCCC 924.065910 5 0.0454 818 | 20/33
23 h-m-p 0.0491 0.2457 0.9770 +YYCCCC 920.521656 5 0.1526 863 | 20/33
24 h-m-p 0.0339 0.1695 1.7056 CCCC 918.604764 3 0.0554 918 | 20/33
25 h-m-p 0.0333 8.0000 2.8385 +YCYCCC 912.266237 5 0.2592 963 | 20/33
26 h-m-p 0.0644 0.3221 3.3339 CYCCCC 909.496844 5 0.1261 1008 | 20/33
27 h-m-p 0.3913 1.9567 0.7662 YCCCC 905.847616 4 0.9425 1051 | 20/33
28 h-m-p 0.1977 0.9886 1.4608 CCCC 904.611777 3 0.2159 1106 | 20/33
29 h-m-p 0.1292 0.6461 0.9104 YCCCC 903.950038 4 0.2368 1149 | 20/33
30 h-m-p 0.1340 0.6700 1.1122 +YCCC 902.669502 3 0.3555 1204 | 20/33
31 h-m-p 0.1684 0.8420 0.6380 CC 902.354539 1 0.1451 1242 | 20/33
32 h-m-p 1.3132 8.0000 0.0705 YCC 902.213862 2 0.8132 1294 | 20/33
33 h-m-p 0.4250 5.1425 0.1348 CCC 902.124992 2 0.5136 1347 | 20/33
34 h-m-p 0.6025 8.0000 0.1149 CYC 902.062521 2 0.6543 1399 | 20/33
35 h-m-p 0.5108 8.0000 0.1472 CYC 902.008720 2 0.5700 1451 | 20/33
36 h-m-p 1.6000 8.0000 0.0408 CC 901.969384 1 1.6045 1502 | 20/33
37 h-m-p 1.6000 8.0000 0.0370 CC 901.940969 1 1.3663 1553 | 20/33
38 h-m-p 1.6000 8.0000 0.0037 YCC 901.924688 2 2.9007 1605 | 20/33
39 h-m-p 1.1271 8.0000 0.0096 CC 901.921160 1 1.5160 1656 | 20/33
40 h-m-p 1.6000 8.0000 0.0035 C 901.920570 0 1.5074 1705 | 20/33
41 h-m-p 1.6000 8.0000 0.0012 C 901.920396 0 1.8118 1754 | 20/33
42 h-m-p 1.6000 8.0000 0.0005 Y 901.920389 0 1.0710 1803 | 20/33
43 h-m-p 1.6000 8.0000 0.0000 Y 901.920389 0 1.2012 1852 | 20/33
44 h-m-p 1.6000 8.0000 0.0000 Y 901.920389 0 1.0550 1901 | 20/33
45 h-m-p 1.4792 8.0000 0.0000 C 901.920389 0 1.4792 1950 | 20/33
46 h-m-p 1.6000 8.0000 0.0000 ----------------.. | 20/33
47 h-m-p 0.0160 8.0000 0.0003 ---------C 901.920389 0 0.0000 2071
Out..
lnL = -901.920389
2072 lfun, 22792 eigenQcodon, 621600 P(t)
end of tree file.
Time used: 5:29
Model 8: beta&w>1
TREE # 1
(1, 10, 13, 16, 17, 21, 23, 7, 8, 9, (((11, (18, 19, 2, 20, 22, 3)), (12, (14, 15, 5))), (4, 6))); MP score: 86
0.065030 0.047514 0.067936 0.069761 0.013905 0.054265 0.038863 0.072186 0.106641 0.081170 0.042735 0.086509 0.036923 0.057239 0.057095 0.092527 0.042756 0.053919 0.065688 0.057815 0.076009 0.103693 0.063122 0.090856 0.071477 0.093576 0.089497 0.015147 0.095143 0.069459 1.525561 0.900000 0.722192 1.277507 1.300000
ntime & nrate & np: 30 2 35
Bounds (np=35):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 9.395674
np = 35
lnL0 = -1091.030953
Iterating by ming2
Initial: fx= 1091.030953
x= 0.06503 0.04751 0.06794 0.06976 0.01391 0.05426 0.03886 0.07219 0.10664 0.08117 0.04274 0.08651 0.03692 0.05724 0.05709 0.09253 0.04276 0.05392 0.06569 0.05782 0.07601 0.10369 0.06312 0.09086 0.07148 0.09358 0.08950 0.01515 0.09514 0.06946 1.52556 0.90000 0.72219 1.27751 1.30000
1 h-m-p 0.0000 0.0002 731.0279 +++ 1029.959400 m 0.0002 41 | 1/35
2 h-m-p 0.0000 0.0002 501.3890 ++ 986.488259 m 0.0002 79 | 2/35
3 h-m-p 0.0000 0.0000 32460.6235 ++ 979.006012 m 0.0000 117 | 3/35
4 h-m-p 0.0000 0.0000 1070.2541 ++ 972.349900 m 0.0000 155 | 4/35
5 h-m-p 0.0000 0.0001 532.1497 ++ 963.163793 m 0.0001 193 | 5/35
6 h-m-p 0.0000 0.0000 2370.8524 ++ 962.900208 m 0.0000 231 | 6/35
7 h-m-p 0.0000 0.0000 2265005.1394 ++ 958.040399 m 0.0000 269 | 7/35
8 h-m-p 0.0000 0.0000 3418.3090 ++ 956.851210 m 0.0000 307 | 8/35
9 h-m-p 0.0000 0.0000 2492340.9506 ++ 950.908118 m 0.0000 345 | 9/35
10 h-m-p 0.0000 0.0000 4544.4068 ++ 949.620947 m 0.0000 383 | 10/35
11 h-m-p 0.0000 0.0000 131720.2701 ++ 948.221663 m 0.0000 421 | 11/35
12 h-m-p 0.0000 0.0000 1819.9875 ++ 946.767126 m 0.0000 459 | 12/35
13 h-m-p 0.0000 0.0000 17813.0411 ++ 945.131165 m 0.0000 497 | 13/35
14 h-m-p 0.0000 0.0000 2324.5052 ++ 945.063238 m 0.0000 535 | 14/35
15 h-m-p 0.0000 0.0000 2629.5759 ++ 942.600099 m 0.0000 573 | 15/35
16 h-m-p 0.0000 0.0000 1758.5433 ++ 940.653777 m 0.0000 611 | 16/35
17 h-m-p 0.0000 0.0000 1154.1069 ++ 937.417172 m 0.0000 649 | 17/35
18 h-m-p 0.0000 0.0000 1411.9749 ++ 936.509406 m 0.0000 687 | 18/35
19 h-m-p 0.0000 0.0000 724.7357 ++ 936.365873 m 0.0000 725 | 19/35
20 h-m-p 0.0000 0.0001 218.6408 ++ 935.043617 m 0.0001 763 | 20/35
21 h-m-p 0.0001 0.0027 57.7143 ++YYCCC 930.698154 4 0.0018 809 | 20/35
22 h-m-p 0.0008 0.0038 70.2163 +CYCCC 924.903167 4 0.0032 855 | 20/35
23 h-m-p 0.0000 0.0002 385.4762 ++ 922.903356 m 0.0002 893 | 20/35
24 h-m-p 0.0023 0.0117 32.3615 YCYCCCC 920.437035 6 0.0053 941 | 20/35
25 h-m-p 0.0089 0.0443 7.6244 CCCCC 919.636353 4 0.0121 987 | 20/35
26 h-m-p 0.0010 0.0049 45.6024 YCCCC 918.731770 4 0.0023 1032 | 20/35
27 h-m-p 0.0053 0.0264 11.1557 +YCYCCC 917.685988 5 0.0159 1079 | 20/35
28 h-m-p 0.0053 0.0265 21.8149 +CCC 916.105073 2 0.0204 1122 | 20/35
29 h-m-p 0.1011 0.5053 2.4394 CCCCC 914.774267 4 0.1429 1168 | 20/35
30 h-m-p 0.0456 0.2278 5.4425 CCCC 913.627784 3 0.0486 1212 | 20/35
31 h-m-p 0.0978 0.4891 1.6959 YCCC 910.914129 3 0.1805 1255 | 20/35
32 h-m-p 0.0819 0.4096 3.4680 CYCCCC 907.300812 5 0.1632 1302 | 20/35
33 h-m-p 0.5110 2.5549 0.8535 YYCCC 903.444806 4 0.7579 1346 | 20/35
34 h-m-p 0.2546 1.2732 0.8706 CCCCC 902.560041 4 0.3235 1407 | 20/35
35 h-m-p 0.5759 2.8793 0.4792 CCC 901.408004 2 0.6144 1464 | 20/35
36 h-m-p 1.3647 8.0000 0.2157 CCCC 900.775291 3 1.3166 1523 | 20/35
37 h-m-p 1.6000 8.0000 0.0836 CCC 900.669907 2 1.3893 1580 | 20/35
38 h-m-p 1.2951 6.4756 0.0586 YCC 900.649902 2 0.8042 1636 | 20/35
39 h-m-p 1.6000 8.0000 0.0281 YC 900.611697 1 3.6857 1690 | 20/35
40 h-m-p 1.6000 8.0000 0.0633 CCC 900.570611 2 2.5741 1747 | 20/35
41 h-m-p 1.6000 8.0000 0.0292 YC 900.551051 1 3.3302 1801 | 20/35
42 h-m-p 1.6000 8.0000 0.0423 YC 900.534947 1 3.8079 1855 | 20/35
43 h-m-p 1.3823 8.0000 0.1165 YC 900.514871 1 3.0139 1909 | 20/35
44 h-m-p 1.6000 8.0000 0.1153 +CC 900.466376 1 6.5751 1965 | 20/35
45 h-m-p 1.6000 8.0000 0.3675 YCC 900.405321 2 3.1530 2021 | 20/35
46 h-m-p 1.6000 8.0000 0.3609 +YC 900.346182 1 4.0267 2076 | 20/35
47 h-m-p 1.6000 8.0000 0.7097 YC 900.288653 1 3.5498 2130 | 20/35
48 h-m-p 1.6000 8.0000 1.0847 YCC 900.253686 2 2.7383 2186 | 20/35
49 h-m-p 1.6000 8.0000 1.3450 CCC 900.236364 2 2.4884 2228 | 20/35
50 h-m-p 1.6000 8.0000 1.4958 YC 900.226369 1 2.8818 2267 | 20/35
51 h-m-p 1.6000 8.0000 1.7480 YCC 900.218048 2 3.0153 2308 | 20/35
52 h-m-p 1.6000 8.0000 2.7783 CC 900.213435 1 2.0706 2348 | 20/35
53 h-m-p 1.6000 8.0000 2.2616 CC 900.210982 1 2.1208 2388 | 20/35
54 h-m-p 1.5385 8.0000 3.1177 CC 900.209386 1 2.2987 2428 | 20/35
55 h-m-p 1.6000 8.0000 2.8135 YC 900.208077 1 3.8688 2467 | 20/35
56 h-m-p 1.6000 8.0000 3.4647 CC 900.207476 1 2.4020 2507 | 20/35
57 h-m-p 1.6000 8.0000 3.3174 YC 900.207029 1 3.4738 2546 | 20/35
58 h-m-p 0.8973 4.4864 5.6500 +YC 900.206831 1 2.2736 2586 | 20/35
59 h-m-p 0.9305 4.6526 2.6872 +YC 900.206693 1 2.7304 2626 | 20/35
60 h-m-p 0.3540 1.7700 2.9182 ++ 900.206576 m 1.7700 2664 | 21/35
61 h-m-p 0.0615 8.0000 6.6942 --------------.. | 21/35
62 h-m-p 0.0002 0.0820 0.1773 C 900.206573 0 0.0002 2752 | 21/35
63 h-m-p 0.0160 8.0000 0.1534 -Y 900.206569 0 0.0006 2805 | 21/35
64 h-m-p 0.0034 1.6899 0.1146 C 900.206555 0 0.0037 2857 | 21/35
65 h-m-p 0.0014 0.6955 0.4821 C 900.206531 0 0.0016 2909 | 21/35
66 h-m-p 0.0010 0.5090 1.2815 +YC 900.206422 1 0.0028 2963 | 21/35
67 h-m-p 0.0051 2.5664 1.7748 YC 900.205921 1 0.0095 3002 | 21/35
68 h-m-p 0.0030 1.3501 5.5546 YC 900.205063 1 0.0052 3041 | 21/35
69 h-m-p 0.0016 0.4436 18.1577 YC 900.203046 1 0.0038 3080 | 21/35
70 h-m-p 0.0030 0.2134 22.7472 CC 900.200741 1 0.0034 3120 | 21/35
71 h-m-p 0.0031 0.3129 25.2773 CC 900.197567 1 0.0043 3160 | 21/35
72 h-m-p 0.0032 0.1712 33.9082 CC 900.194630 1 0.0029 3200 | 21/35
73 h-m-p 0.0201 0.3456 4.9485 -YC 900.194324 1 0.0021 3240 | 21/35
74 h-m-p 0.0163 5.3107 0.6398 +YC 900.191554 1 0.1515 3280 | 21/35
75 h-m-p 1.2567 7.8921 0.0771 C 900.191046 0 0.2893 3332 | 21/35
76 h-m-p 1.6000 8.0000 0.0058 Y 900.191036 0 0.9630 3384 | 21/35
77 h-m-p 1.6000 8.0000 0.0006 Y 900.191035 0 1.0163 3436 | 21/35
78 h-m-p 1.6000 8.0000 0.0000 --------Y 900.191035 0 0.0000 3496
Out..
lnL = -900.191035
3497 lfun, 41964 eigenQcodon, 1154010 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -906.965402 S = -850.848582 -70.154139
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 89 patterns 11:26
did 20 / 89 patterns 11:26
did 30 / 89 patterns 11:26
did 40 / 89 patterns 11:26
did 50 / 89 patterns 11:27
did 60 / 89 patterns 11:27
did 70 / 89 patterns 11:27
did 80 / 89 patterns 11:27
did 89 / 89 patterns 11:27end of tree file.
Time used: 11:27
The loglikelihoods for models M1, M2, M7 and M8 are -900.542915 -900.189021 -901.920389 -900.191035 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
A59_NA_YP_009824984_1_NA_USA_Unknown_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAA
JHM_WU_Dns2_NS5_AFO11509_1_1947_08_14_USA_Unknown_Murine_coronavirus -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKAWCSNQGKFAA
JHM_WU_NS5_AFO11519_1_1947_08_14_USA_Unknown_Murine_coronavirus -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKAWCSNQGKFAA
MHV_1_NA_ACN89739_1_NA_USA_Mouse_Murine_coronavirus -----MEIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKAWCSNQGKFAA
MHV_2_NA_AAF19390_1_NA_NA_Unknown_Murine_coronavirus -----MDIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRIGYCRVPLKAWCSNQGKFAA
MHV_3_NA_ACN89751_1_NA_USA_Mouse_Murine_coronavirus -----MEIWHVSDAWLRRTRDFGVTRLEDFCFQFNYTQPRVGYCRVPLKAWCSNQGKFAA
MHV_BHKR_lab_USA_icA59_17Cl1_2012_NS5_AGT17729_1_2012_10_25_USA_Mouse_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAA
MHV_BHKR_lab_USA_icA59_L94P_2012_NS5_AGT17740_1_2012_10_25_USA_Mouse_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAA
MHV_BHKR_lab_USA_icA59_ns2M_2012_NS5_AGT17751_1_2012_10_25_USA_Mouse_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAA
MHV_BHKR_lab_USA_infA59_H126A_2012_NS5_AGT17718_1_2012_10_25_USA_Mouse_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAA
MHV_JHM_IA_NA_ACN89767_1_NA_USA_Mouse_Murine_coronavirus -----MEIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKAWCSNQGKFAA
MHV_MI_ns5_BAJ04698_1_1994_Australia_Mouse_Murine_coronavirus -----MEIWHVSDAWLRNTRDFGVTRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAA
ML_10_ORF5A_AAF69346_1_NA_NA_Unknown_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAA
ML_11_orf5A_AAF68925_1_NA_NA_Unknown_Murine_coronavirus -----MDIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRIGYCRVPLKAWCSNQGKFAA
Penn_97_1_ORF5A_AAF69335_1_NA_NA_Unknown_Murine_coronavirus -----MDIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRIGYCRVPLKAWCSNQGKFAA
RA59_R13_NA_ACN89690_1_2006_01_01_USA_Mouse_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAA
RA59_SJHM_NA_ACN89711_1_NA_USA_Mouse_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAA
RJHM_A_NA_ACN89702_1_NA_USA_Mouse_Murine_coronavirus -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKAWCSNQGKFAA
UNKNOWN_AC_000192_NA_YP_209235_1_NA_NA_Unknown_Murine_coronavirus -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKAWCSNQGKFAA
SA59_RJHM_NA_ACN89730_1_NA_USA_Mouse_Murine_coronavirus -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKAWCSNQGKFAA
inf_MHV_A59_NA_ACN89758_1_NA_USA_Mouse_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAA
repA59_RJHM_NA_ACN89714_1_NA_USA_Mouse_Murine_coronavirus -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKAWCSNQGKFAA
repJHM_RA59_NA_ACN89778_1_NA_USA_Mouse_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAA
** *******.****** *********** ***:*******************
A59_NA_YP_009824984_1_NA_USA_Unknown_Murine_coronavirus QFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV
JHM_WU_Dns2_NS5_AFO11509_1_1947_08_14_USA_Unknown_Murine_coronavirus QFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAADFIIWRATQLERNV
JHM_WU_NS5_AFO11519_1_1947_08_14_USA_Unknown_Murine_coronavirus QFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAADFIIWRATQLERNV
MHV_1_NA_ACN89739_1_NA_USA_Mouse_Murine_coronavirus QFTLKS-CEKSGHQKFITSFTAYGKTVQQAVGKLVEEAVDFILFRALLLERNV
MHV_2_NA_AAF19390_1_NA_NA_Unknown_Murine_coronavirus QFTLKS-CEKSGQEIFITSFTAYDKTVKKAVSKLVEEAVDFIIWRATQLERYV
MHV_3_NA_ACN89751_1_NA_USA_Mouse_Murine_coronavirus QFTLKS-CEKSGHPKFITSFTAYGKTVQQAVSKLVEEAVDFILFRALLLERNV
MHV_BHKR_lab_USA_icA59_17Cl1_2012_NS5_AGT17729_1_2012_10_25_USA_Mouse_Murine_coronavirus QFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV
MHV_BHKR_lab_USA_icA59_L94P_2012_NS5_AGT17740_1_2012_10_25_USA_Mouse_Murine_coronavirus QFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV
MHV_BHKR_lab_USA_icA59_ns2M_2012_NS5_AGT17751_1_2012_10_25_USA_Mouse_Murine_coronavirus QFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV
MHV_BHKR_lab_USA_infA59_H126A_2012_NS5_AGT17718_1_2012_10_25_USA_Mouse_Murine_coronavirus QFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV
MHV_JHM_IA_NA_ACN89767_1_NA_USA_Mouse_Murine_coronavirus QFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAADFIIWRATQLERNV
MHV_MI_ns5_BAJ04698_1_1994_Australia_Mouse_Murine_coronavirus QFTLKSKPADKGQEKFITSFTAYGKTVKQAVSKLVEEAVDFIIWRATQLERNV
ML_10_ORF5A_AAF69346_1_NA_NA_Unknown_Murine_coronavirus QFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV
ML_11_orf5A_AAF68925_1_NA_NA_Unknown_Murine_coronavirus QFTLKS-CEKSGQEIFITSFTAYDKTVKKAVSKLVEEAVDFIIWRATQLERYV
Penn_97_1_ORF5A_AAF69335_1_NA_NA_Unknown_Murine_coronavirus QFTLKS-CEKSGQEIFITSFTAYDKTVKKAVSKLVEEAVDFIIWRATQLERYV
RA59_R13_NA_ACN89690_1_2006_01_01_USA_Mouse_Murine_coronavirus QFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV
RA59_SJHM_NA_ACN89711_1_NA_USA_Mouse_Murine_coronavirus QFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV
RJHM_A_NA_ACN89702_1_NA_USA_Mouse_Murine_coronavirus QFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAADFIIWRATQLERNV
UNKNOWN_AC_000192_NA_YP_209235_1_NA_NA_Unknown_Murine_coronavirus QFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAADFIIWRATQLERNV
SA59_RJHM_NA_ACN89730_1_NA_USA_Mouse_Murine_coronavirus QFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAADFIIWRATQLERNV
inf_MHV_A59_NA_ACN89758_1_NA_USA_Mouse_Murine_coronavirus QFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV
repA59_RJHM_NA_ACN89714_1_NA_USA_Mouse_Murine_coronavirus QFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAADFIIWRATQLERNV
repJHM_RA59_NA_ACN89778_1_NA_USA_Mouse_Murine_coronavirus QFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV
****** . *: ********.:**::**.******.***::** *** *
>A59_NA_YP_009824984_1_NA_USA_Unknown_Murine_coronavirus ATGAGACCAACAGCCACATGGATTTGGCATGTGAGTGATGCATGGTTACGCCGCACGCGGGACTTTGGTGTCATTCGCCTAGAAGATTTTTGTTTTCAATTTAATTATAGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACCCTAAAAAGT---TGCGAAAAACCAGGTCACGAAAAATTTATTACTAGCTTCACGGCCTACGGCAGAACTGTCCAACAGGCCGTTAGCAAGTTAGTAGAAGAAGCTGTTGATTTTATTCTTTTTAGGGCCACGCAGCTCGAAAGAAATGTT >JHM_WU_Dns2_NS5_AFO11509_1_1947_08_14_USA_Unknown_Murine_coronavirus ---------------ATGGAGATTTGGCTTGTGAGTGACGCCTGGCTACGCCGAACGCGAGACTTTGGTGTCACTCGACTTGAAGATTTTTGCTTCCAATTTAATTATTGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACTCTTAAAAGT---TGCGAAAAATCAGGCCACCAAAAATTCATTACTAGCTTCACGGCCTACGGCAAAACAGTCAAACAGGCCGTTAGTAAGCTAGTAGAAGAAGCTGCTGATTTTATCATCTGGAGAGCCACGCAGCTCGAAAGAAATGTT >JHM_WU_NS5_AFO11519_1_1947_08_14_USA_Unknown_Murine_coronavirus ---------------ATGGAGATTTGGCTTGTGAGTGACGCCTGGCTACGCCGAACGCGAGACTTTGGTGTCACTCGACTTGAAGATTTTTGCTTCCAATTTAATTATTGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACTCTTAAAAGT---TGCGAAAAATCAGGCCACCAAAAATTCATTACTAGCTTCACGGCCTACGGCAAAACAGTCAAACAGGCCGTTAGTAAGCTAGTAGAAGAAGCTGCTGATTTTATCATCTGGAGAGCCACGCAGCTCGAAAGAAATGTT >MHV_1_NA_ACN89739_1_NA_USA_Mouse_Murine_coronavirus ---------------ATGGAGATTTGGCATGTGAGTGACGCCTGGCTACGCCGAACGCGAGACTTTGGTGTCACTCGACTTGAAGATTTTTGCTTCCAATTTAATTATTGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACTCTTAAAAGT---TGCGAAAAATCAGGCCACCAAAAATTTATTACTAGCTTCACAGCCTACGGCAAAACTGTCCAACAGGCCGTTGGTAAGTTAGTAGAAGAAGCTGTCGATTTTATTCTTTTTAGGGCCTTGTTGCTCGAAAGAAATGTT >MHV_2_NA_AAF19390_1_NA_NA_Unknown_Murine_coronavirus ---------------ATGGACATATGGCATGTGAGTGATGCTTGGTTACGCCGAACGCGAGACTTTGGTGTCACTCGCCTTGAAGATTTTTGCTTTCAATTTAATTATTGCCAACCTCGAATTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACCCTTAAAAGT---TGCGAAAAATCAGGCCAAGAAATATTTATTACTAGCTTCACGGCCTACGACAAAACTGTCAAAAAGGCCGTTAGTAAGCTAGTAGAAGAAGCTGTTGATTTTATCATCTGGAGAGCCACGCAGCTCGAAAGATATGTT >MHV_3_NA_ACN89751_1_NA_USA_Mouse_Murine_coronavirus ---------------ATGGAGATTTGGCATGTGAGTGACGCTTGGCTACGCAGGACGCGTGACTTTGGCGTTACTCGACTTGAAGATTTTTGCTTTCAGTTTAATTATACCCAACCTCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACTCTTAAAAGT---TGCGAAAAATCAGGCCACCCAAAATTTATTACTAGCTTCACAGCCTACGGCAAAACTGTCCAACAGGCCGTTAGTAAGTTAGTAGAAGAAGCTGTTGATTTTATTCTTTTTAGGGCCTTGTTGCTCGAAAGAAATGTT >MHV_BHKR_lab_USA_icA59_17Cl1_2012_NS5_AGT17729_1_2012_10_25_USA_Mouse_Murine_coronavirus ATGAGACCAACAGCCACATGGATTTGGCATGTGAGTGATGCATGGTTACGCCGCACGCGGGACTTTGGTGTCATTCGCCTAGAAGATTTTTGTTTTCAATTTAATTATAGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACCCTAAAAAGT---TGCGAAAAACCAGGTCACGAAAAATTTATTACTAGCTTCACGGCCTACGGCAGAACTGTCCAACAGGCCGTTAGCAAGTTAGTAGAAGAAGCTGTTGATTTTATTCTTTTTAGGGCCACGCAGCTCGAAAGAAATGTT >MHV_BHKR_lab_USA_icA59_L94P_2012_NS5_AGT17740_1_2012_10_25_USA_Mouse_Murine_coronavirus ATGAGACCAACAGCCACATGGATTTGGCATGTGAGTGATGCATGGTTACGCCGCACGCGGGACTTTGGTGTCATTCGCCTAGAAGATTTTTGTTTTCAATTTAATTATAGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACCCTAAAAAGT---TGCGAAAAACCAGGTCACGAAAAATTTATTACTAGCTTCACGGCCTACGGCAGAACTGTCCAACAGGCCGTTAGCAAGTTAGTAGAAGAAGCTGTTGATTTTATTCTTTTTAGGGCCACGCAGCTCGAAAGAAATGTT >MHV_BHKR_lab_USA_icA59_ns2M_2012_NS5_AGT17751_1_2012_10_25_USA_Mouse_Murine_coronavirus ATGAGACCAACAGCCACATGGATTTGGCATGTGAGTGATGCATGGTTACGCCGCACGCGGGACTTTGGTGTCATTCGCCTAGAAGATTTTTGTTTTCAATTTAATTATAGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACCCTAAAAAGT---TGCGAAAAACCAGGTCACGAAAAATTTATTACTAGCTTCACGGCCTACGGCAGAACTGTCCAACAGGCCGTTAGCAAGTTAGTAGAAGAAGCTGTTGATTTTATTCTTTTTAGGGCCACGCAGCTCGAAAGAAATGTT >MHV_BHKR_lab_USA_infA59_H126A_2012_NS5_AGT17718_1_2012_10_25_USA_Mouse_Murine_coronavirus ATGAGACCAACAGCCACATGGATTTGGCATGTGAGTGATGCATGGTTACGCCGCACGCGGGACTTTGGTGTCATTCGCCTAGAAGATTTTTGTTTTCAATTTAATTATAGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACCCTAAAAAGT---TGCGAAAAACCAGGTCACGAAAAATTTATTACTAGCTTCACGGCCTACGGCAGAACTGTCCAACAGGCCGTTAGCAAGTTAGTAGAAGAAGCTGTTGATTTTATTCTTTTTAGGGCCACGCAGCTCGAAAGAAATGTT >MHV_JHM_IA_NA_ACN89767_1_NA_USA_Mouse_Murine_coronavirus ---------------ATGGAGATTTGGCATGTGAGTGACGCCTGGCTACGCCGAACGCGAGACTTTGGTGTCACTCGACTTGAAGATTTTTGCTTCCAATTTAATTATTGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACTCTTAAAAGT---TGCGAAAAATCAGGCCACCAAAAATTCATTACTAGCTTCACGGCCTACGGCAAAACAGTCAAACAGGCCGTTAGTAAGCTAGTAGAAGAAGCTGCTGATTTTATCATCTGGAGAGCCACGCAGCTCGAAAGAAATGTT >MHV_MI_ns5_BAJ04698_1_1994_Australia_Mouse_Murine_coronavirus ---------------ATGGAGATATGGCATGTGAGTGACGCTTGGCTGCGCAATACGCGTGACTTTGGCGTTACCCGACTTGAAGATTTTTGTTTTCAGTTTAATTATTCCCAACCCAGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCGTGGTGTAGCAACCAGGGAAAATTTGCAGCGCAATTTACCCTAAAGAGCAAACCAGCAGATAAGGGACAAGAAAAATTTATTACTAGCTTCACGGCCTACGGCAAAACAGTCAAACAGGCCGTCAGCAAGCTAGTAGAAGAAGCTGTTGATTTTATCATCTGGAGAGCAACCCAGCTCGAAAGAAATGTT >ML_10_ORF5A_AAF69346_1_NA_NA_Unknown_Murine_coronavirus ATGAGACCAACAGCCACATGGATTTGGCATGTGAGTGATGCATGGTTACGCCGCACGCGGGACTTTGGTGTCATTCGCCTAGAAGATTTTTGTTTTCAATTTAATTATAGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACCCTAAAAAGT---TGCGAAAAACCAGGTCACGAAAAATTTATTACTAGCTTCACGGCCTACGGCAGAACTGTCCAACAGGCCGTTAGCAAGTTAGTAGAAGAAGCTGTTGATTTTATTCTTTTTAGGGCCACGCAGCTCGAAAGAAATGTT >ML_11_orf5A_AAF68925_1_NA_NA_Unknown_Murine_coronavirus ---------------ATGGACATATGGCATGTGAGTGATGCTTGGTTACGCCGAACGCGAGACTTTGGTGTCACTCGCCTTGAAGATTTTTGCTTTCAATTTAATTATTGCCAACCTCGAATTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACCCTTAAAAGT---TGCGAAAAATCAGGCCAAGAAATATTTATTACTAGCTTCACGGCCTACGACAAAACTGTCAAAAAGGCCGTTAGTAAGCTAGTAGAAGAAGCTGTTGATTTTATCATCTGGAGAGCCACGCAGCTCGAAAGATATGTT >Penn_97_1_ORF5A_AAF69335_1_NA_NA_Unknown_Murine_coronavirus ---------------ATGGACATATGGCATGTGAGTGATGCTTGGTTACGCCGAACGCGAGACTTTGGTGTCACTCGCCTTGAAGATTTTTGCTTTCAATTTAATTATTGCCAACCTCGAATTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACCCTTAAAAGT---TGCGAAAAATCAGGCCAAGAAATATTTATTACTAGCTTCACGGCCTACGACAAAACTGTCAAAAAGGCCGTTAGTAAGCTAGTAGAAGAAGCTGTTGATTTTATCATCTGGAGAGCCACGCAGCTCGAAAGATATGTT >RA59_R13_NA_ACN89690_1_2006_01_01_USA_Mouse_Murine_coronavirus ATGAGACCAACAGCCACATGGATTTGGCATGTGAGTGATGCATGGTTACGCCGCACGCGGGACTTTGGTGTCATTCGCCTAGAAGATTTTTGTTTTCAATTTAATTATAGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACCCTAAAAAGT---TGCGAAAAACCAGGTCACGAAAAATTTATTACTAGCTTCACGGCCTACGGCAGAACTGTCCAACAGGCCGTTAGCAAGTTAGTAGAAGAAGCTGTTGATTTTATTCTTTTTAGGGCCACGCAGCTCGAAAGAAATGTT >RA59_SJHM_NA_ACN89711_1_NA_USA_Mouse_Murine_coronavirus ATGAGACCAACAGCCACATGGATTTGGCATGTGAGTGATGCATGGTTACGCCGCACGCGGGACTTTGGTGTCATTCGCCTAGAAGATTTTTGTTTTCAATTTAATTATAGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACCCTAAAAAGT---TGCGAAAAACCAGGTCACGAAAAATTTATTACTAGCTTCACGGCCTACGGCAGAACTGTCCAACAGGCCGTTAGCAAGTTAGTAGAAGAAGCTGTTGATTTTATTCTTTTTAGGGCCACGCAGCTCGAAAGAAATGTT >RJHM_A_NA_ACN89702_1_NA_USA_Mouse_Murine_coronavirus ---------------ATGGAGATTTGGCTTGTGAGTGACGCCTGGCTACGCCGAACGCGAGACTTTGGTGTCACTCGACTTGAAGATTTTTGCTTCCAATTTAATTATTGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACTCTTAAAAGT---TGCGAAAAATCAGGCCACCAAAAATTCATTACTAGCTTCACGGCCTACGGCAAAACAGTCAAACAGGCCGTTAGTAAGCTAGTAGAAGAAGCTGCTGATTTTATCATCTGGAGAGCCACGCAGCTCGAAAGAAATGTT >UNKNOWN_AC_000192_NA_YP_209235_1_NA_NA_Unknown_Murine_coronavirus ---------------ATGGAGATTTGGCTTGTGAGTGACGCCTGGCTACGCCGAACGCGAGACTTTGGTGTCACTCGACTTGAAGATTTTTGCTTCCAATTTAATTATTGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACTCTTAAAAGT---TGCGAAAAATCAGGCCACCAAAAATTCATTACTAGCTTCACGGCCTACGGCAAAACAGTCAAACAGGCCGTTAGTAAGCTAGTAGAAGAAGCTGCTGATTTTATCATCTGGAGAGCCACGCAGCTCGAAAGAAATGTT >SA59_RJHM_NA_ACN89730_1_NA_USA_Mouse_Murine_coronavirus ---------------ATGGAGATTTGGCTTGTGAGTGACGCCTGGCTACGCCGAACGCGAGACTTTGGTGTCACTCGACTTGAAGATTTTTGCTTCCAATTTAATTATTGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACTCTTAAAAGT---TGCGAAAAATCAGGCCACCAAAAATTCATTACTAGCTTCACGGCCTACGGCAAAACAGTCAAACAGGCCGTTAGTAAGCTAGTAGAAGAAGCTGCTGATTTTATCATCTGGAGAGCCACGCAGCTCGAAAGAAATGTT >inf_MHV_A59_NA_ACN89758_1_NA_USA_Mouse_Murine_coronavirus ATGAGACCAACAGCCACATGGATTTGGCATGTGAGTGATGCATGGTTACGCCGCACGCGGGACTTTGGTGTCATTCGCCTAGAAGATTTTTGTTTTCAATTTAATTATAGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACCCTAAAAAGT---TGCGAAAAACCAGGTCACGAAAAATTTATTACTAGCTTCACGGCCTACGGCAGAACTGTCCAACAGGCCGTTAGCAAGTTAGTAGAAGAAGCTGTTGATTTTATTCTTTTTAGGGCCACGCAGCTCGAAAGAAATGTT >repA59_RJHM_NA_ACN89714_1_NA_USA_Mouse_Murine_coronavirus ---------------ATGGAGATTTGGCTTGTGAGTGACGCCTGGCTACGCCGAACGCGAGACTTTGGTGTCACTCGACTTGAAGATTTTTGCTTCCAATTTAATTATTGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACTCTTAAAAGT---TGCGAAAAATCAGGCCACCAAAAATTCATTACTAGCTTCACGGCCTACGGCAAAACAGTCAAACAGGCCGTTAGTAAGCTAGTAGAAGAAGCTGCTGATTTTATCATCTGGAGAGCCACGCAGCTCGAAAGAAATGTT >repJHM_RA59_NA_ACN89778_1_NA_USA_Mouse_Murine_coronavirus ATGAGACCAACAGCCACATGGATTTGGCATGTGAGTGATGCATGGTTACGCCGCACGCGGGACTTTGGTGTCATTCGCCTAGAAGATTTTTGTTTTCAATTTAATTATAGCCAACCCCGAGTTGGTTATTGTAGAGTTCCTTTAAAGGCTTGGTGTAGCAACCAGGGTAAATTTGCAGCGCAGTTTACCCTAAAAAGT---TGCGAAAAACCAGGTCACGAAAAATTTATTACTAGCTTCACGGCCTACGGCAGAACTGTCCAACAGGCCGTTAGCAAGTTAGTAGAAGAAGCTGTTGATTTTATTCTTTTTAGGGCCACGCAGCTCGAAAGAAATGTT
>A59_NA_YP_009824984_1_NA_USA_Unknown_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV >JHM_WU_Dns2_NS5_AFO11509_1_1947_08_14_USA_Unknown_Murine_coronavirus -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAADFIIWRATQLERNV >JHM_WU_NS5_AFO11519_1_1947_08_14_USA_Unknown_Murine_coronavirus -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAADFIIWRATQLERNV >MHV_1_NA_ACN89739_1_NA_USA_Mouse_Murine_coronavirus -----MEIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVQQAVGKLVEEAVDFILFRALLLERNV >MHV_2_NA_AAF19390_1_NA_NA_Unknown_Murine_coronavirus -----MDIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRIGYCRVPLKAWCSNQGKFAAQFTLKS-CEKSGQEIFITSFTAYDKTVKKAVSKLVEEAVDFIIWRATQLERYV >MHV_3_NA_ACN89751_1_NA_USA_Mouse_Murine_coronavirus -----MEIWHVSDAWLRRTRDFGVTRLEDFCFQFNYTQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKSGHPKFITSFTAYGKTVQQAVSKLVEEAVDFILFRALLLERNV >MHV_BHKR_lab_USA_icA59_17Cl1_2012_NS5_AGT17729_1_2012_10_25_USA_Mouse_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV >MHV_BHKR_lab_USA_icA59_L94P_2012_NS5_AGT17740_1_2012_10_25_USA_Mouse_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV >MHV_BHKR_lab_USA_icA59_ns2M_2012_NS5_AGT17751_1_2012_10_25_USA_Mouse_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV >MHV_BHKR_lab_USA_infA59_H126A_2012_NS5_AGT17718_1_2012_10_25_USA_Mouse_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV >MHV_JHM_IA_NA_ACN89767_1_NA_USA_Mouse_Murine_coronavirus -----MEIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAADFIIWRATQLERNV >MHV_MI_ns5_BAJ04698_1_1994_Australia_Mouse_Murine_coronavirus -----MEIWHVSDAWLRNTRDFGVTRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAAQFTLKSKPADKGQEKFITSFTAYGKTVKQAVSKLVEEAVDFIIWRATQLERNV >ML_10_ORF5A_AAF69346_1_NA_NA_Unknown_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV >ML_11_orf5A_AAF68925_1_NA_NA_Unknown_Murine_coronavirus -----MDIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRIGYCRVPLKAWCSNQGKFAAQFTLKS-CEKSGQEIFITSFTAYDKTVKKAVSKLVEEAVDFIIWRATQLERYV >Penn_97_1_ORF5A_AAF69335_1_NA_NA_Unknown_Murine_coronavirus -----MDIWHVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRIGYCRVPLKAWCSNQGKFAAQFTLKS-CEKSGQEIFITSFTAYDKTVKKAVSKLVEEAVDFIIWRATQLERYV >RA59_R13_NA_ACN89690_1_2006_01_01_USA_Mouse_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV >RA59_SJHM_NA_ACN89711_1_NA_USA_Mouse_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV >RJHM_A_NA_ACN89702_1_NA_USA_Mouse_Murine_coronavirus -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAADFIIWRATQLERNV >UNKNOWN_AC_000192_NA_YP_209235_1_NA_NA_Unknown_Murine_coronavirus -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAADFIIWRATQLERNV >SA59_RJHM_NA_ACN89730_1_NA_USA_Mouse_Murine_coronavirus -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAADFIIWRATQLERNV >inf_MHV_A59_NA_ACN89758_1_NA_USA_Mouse_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV >repA59_RJHM_NA_ACN89714_1_NA_USA_Mouse_Murine_coronavirus -----MEIWLVSDAWLRRTRDFGVTRLEDFCFQFNYCQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKSGHQKFITSFTAYGKTVKQAVSKLVEEAADFIIWRATQLERNV >repJHM_RA59_NA_ACN89778_1_NA_USA_Mouse_Murine_coronavirus MRPTATWIWHVSDAWLRRTRDFGVIRLEDFCFQFNYSQPRVGYCRVPLKAWCSNQGKFAAQFTLKS-CEKPGHEKFITSFTAYGRTVQQAVSKLVEEAVDFILFRATQLERNV
Reading sequence file /data//pss_subsets/A59_NA_YP_009824984_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/codeml/fasta/A59_NA_YP_009824984_1_NA_USA_Unknown_Murine_coronavirus.result.1
Found 23 sequences of length 339
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 7.4%
Found 53 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0%100.0%
Using a window size of 80 with k as 13
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 50 polymorphic sites
**p-Value(s)**
----------
NSS: 0.00e+00 (1000 permutations)
Max Chi^2: 0.00e+00 (1000 permutations)
PHI (Permutation): 0.00e+00 (1000 permutations)
PHI (Normal): 7.93e-09
#NEXUS
[ID: 8749680763]
begin taxa;
dimensions ntax=23;
taxlabels
A59_NA_YP_009824984_1_NA_USA_Unknown_Murine_coronavirus
MHV_BHKR_lab_USA_infA59_H126A_2012_NS5_AGT17718_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_JHM_IA_NA_ACN89767_1_NA_USA_Mouse_Murine_coronavirus
MHV_MI_ns5_BAJ04698_1_1994_Australia_Mouse_Murine_coronavirus
ML_10_ORF5A_AAF69346_1_NA_NA_Unknown_Murine_coronavirus
ML_11_orf5A_AAF68925_1_NA_NA_Unknown_Murine_coronavirus
Penn_97_1_ORF5A_AAF69335_1_NA_NA_Unknown_Murine_coronavirus
RA59_R13_NA_ACN89690_1_2006_01_01_USA_Mouse_Murine_coronavirus
RA59_SJHM_NA_ACN89711_1_NA_USA_Mouse_Murine_coronavirus
RJHM_A_NA_ACN89702_1_NA_USA_Mouse_Murine_coronavirus
UNKNOWN_AC_000192_NA_YP_209235_1_NA_NA_Unknown_Murine_coronavirus
JHM_WU_Dns2_NS5_AFO11509_1_1947_08_14_USA_Unknown_Murine_coronavirus
SA59_RJHM_NA_ACN89730_1_NA_USA_Mouse_Murine_coronavirus
inf_MHV_A59_NA_ACN89758_1_NA_USA_Mouse_Murine_coronavirus
repA59_RJHM_NA_ACN89714_1_NA_USA_Mouse_Murine_coronavirus
repJHM_RA59_NA_ACN89778_1_NA_USA_Mouse_Murine_coronavirus
JHM_WU_NS5_AFO11519_1_1947_08_14_USA_Unknown_Murine_coronavirus
MHV_1_NA_ACN89739_1_NA_USA_Mouse_Murine_coronavirus
MHV_2_NA_AAF19390_1_NA_NA_Unknown_Murine_coronavirus
MHV_3_NA_ACN89751_1_NA_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_17Cl1_2012_NS5_AGT17729_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_L94P_2012_NS5_AGT17740_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_ns2M_2012_NS5_AGT17751_1_2012_10_25_USA_Mouse_Murine_coronavirus
;
end;
begin trees;
translate
1 A59_NA_YP_009824984_1_NA_USA_Unknown_Murine_coronavirus,
2 MHV_BHKR_lab_USA_infA59_H126A_2012_NS5_AGT17718_1_2012_10_25_USA_Mouse_Murine_coronavirus,
3 MHV_JHM_IA_NA_ACN89767_1_NA_USA_Mouse_Murine_coronavirus,
4 MHV_MI_ns5_BAJ04698_1_1994_Australia_Mouse_Murine_coronavirus,
5 ML_10_ORF5A_AAF69346_1_NA_NA_Unknown_Murine_coronavirus,
6 ML_11_orf5A_AAF68925_1_NA_NA_Unknown_Murine_coronavirus,
7 Penn_97_1_ORF5A_AAF69335_1_NA_NA_Unknown_Murine_coronavirus,
8 RA59_R13_NA_ACN89690_1_2006_01_01_USA_Mouse_Murine_coronavirus,
9 RA59_SJHM_NA_ACN89711_1_NA_USA_Mouse_Murine_coronavirus,
10 RJHM_A_NA_ACN89702_1_NA_USA_Mouse_Murine_coronavirus,
11 UNKNOWN_AC_000192_NA_YP_209235_1_NA_NA_Unknown_Murine_coronavirus,
12 JHM_WU_Dns2_NS5_AFO11509_1_1947_08_14_USA_Unknown_Murine_coronavirus,
13 SA59_RJHM_NA_ACN89730_1_NA_USA_Mouse_Murine_coronavirus,
14 inf_MHV_A59_NA_ACN89758_1_NA_USA_Mouse_Murine_coronavirus,
15 repA59_RJHM_NA_ACN89714_1_NA_USA_Mouse_Murine_coronavirus,
16 repJHM_RA59_NA_ACN89778_1_NA_USA_Mouse_Murine_coronavirus,
17 JHM_WU_NS5_AFO11519_1_1947_08_14_USA_Unknown_Murine_coronavirus,
18 MHV_1_NA_ACN89739_1_NA_USA_Mouse_Murine_coronavirus,
19 MHV_2_NA_AAF19390_1_NA_NA_Unknown_Murine_coronavirus,
20 MHV_3_NA_ACN89751_1_NA_USA_Mouse_Murine_coronavirus,
21 MHV_BHKR_lab_USA_icA59_17Cl1_2012_NS5_AGT17729_1_2012_10_25_USA_Mouse_Murine_coronavirus,
22 MHV_BHKR_lab_USA_icA59_L94P_2012_NS5_AGT17740_1_2012_10_25_USA_Mouse_Murine_coronavirus,
23 MHV_BHKR_lab_USA_icA59_ns2M_2012_NS5_AGT17751_1_2012_10_25_USA_Mouse_Murine_coronavirus
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:1.608979e-03,2:1.523998e-03,5:1.595848e-03,8:1.576293e-03,9:1.492327e-03,14:1.566505e-03,16:1.611686e-03,21:1.573550e-03,22:1.606525e-03,23:1.499377e-03,(((3:1.726110e-03,(10:1.605974e-03,11:1.546735e-03,12:1.569872e-03,13:1.668943e-03,15:1.563429e-03,17:1.590668e-03)0.918:3.935957e-03)0.954:9.834225e-03,(4:9.526459e-02,(6:1.631018e-03,7:1.652078e-03,19:1.719974e-03)1.000:3.004457e-02)0.928:1.247837e-02)1.000:2.479062e-02,(18:7.628453e-03,20:2.966282e-02)0.995:1.541087e-02)1.000:5.723016e-02);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:1.608979e-03,2:1.523998e-03,5:1.595848e-03,8:1.576293e-03,9:1.492327e-03,14:1.566505e-03,16:1.611686e-03,21:1.573550e-03,22:1.606525e-03,23:1.499377e-03,(((3:1.726110e-03,(10:1.605974e-03,11:1.546735e-03,12:1.569872e-03,13:1.668943e-03,15:1.563429e-03,17:1.590668e-03):3.935957e-03):9.834225e-03,(4:9.526459e-02,(6:1.631018e-03,7:1.652078e-03,19:1.719974e-03):3.004457e-02):1.247837e-02):2.479062e-02,(18:7.628453e-03,20:2.966282e-02):1.541087e-02):5.723016e-02);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -976.74 -1001.78
2 -976.55 -1004.49
--------------------------------------
TOTAL -976.64 -1003.87
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.374488 0.002746 0.274309 0.477513 0.369983 1501.00 1501.00 1.000
r(A<->C){all} 0.172963 0.001720 0.097354 0.257416 0.171189 707.62 778.09 1.002
r(A<->G){all} 0.154770 0.001519 0.084823 0.234113 0.152091 639.39 671.04 1.000
r(A<->T){all} 0.140046 0.001208 0.076996 0.208505 0.137739 763.21 773.16 1.000
r(C<->G){all} 0.087480 0.001068 0.029624 0.153119 0.084854 649.62 806.65 1.001
r(C<->T){all} 0.407633 0.003213 0.296509 0.518160 0.406145 460.00 498.51 1.002
r(G<->T){all} 0.037107 0.000395 0.003231 0.075987 0.033682 920.24 961.96 1.000
pi(A){all} 0.284076 0.000510 0.238309 0.326567 0.283879 1243.05 1262.48 1.000
pi(C){all} 0.199402 0.000397 0.161118 0.237035 0.198504 1110.52 1129.30 1.000
pi(G){all} 0.234942 0.000460 0.193709 0.276810 0.234443 1046.43 1127.18 1.000
pi(T){all} 0.281580 0.000505 0.238363 0.326381 0.281214 1032.38 1043.84 1.001
alpha{1,2} 1.046073 0.668743 0.169190 2.785717 0.799385 1086.66 1149.13 1.000
alpha{3} 1.588614 1.156432 0.216970 3.789392 1.314102 1166.45 1222.72 1.001
pinvar{all} 0.266395 0.019998 0.000152 0.494542 0.269121 1008.16 1035.16 1.002
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/A59_NA_YP_009824984_1_NA_USA_Unknown_Murine_coronavirus.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 23 ls = 107
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 9 6 6 8 8 9 | Ser TCT 0 0 0 0 0 0 | Tyr TAT 2 2 2 2 3 2 | Cys TGT 3 2 2 2 2 2
TTC 1 3 3 2 1 1 | TCC 0 0 0 0 0 0 | TAC 1 1 1 1 1 1 | TGC 1 3 3 3 3 2
Leu TTA 3 1 1 2 2 2 | TCA 0 1 1 1 1 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 0 0 0 2 0 2 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 4 4 4 3 4 3
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 1 3 3 3 2 3 | Pro CCT 1 1 1 1 2 2 | His CAT 1 0 0 1 1 1 | Arg CGT 0 0 0 0 0 1
CTC 1 1 1 1 1 1 | CCC 1 1 1 1 0 0 | CAC 1 1 1 1 0 1 | CGC 3 1 1 1 2 1
CTA 2 2 2 1 1 1 | CCA 1 0 0 0 0 1 | Gln CAA 3 3 3 4 3 2 | CGA 1 4 4 4 3 2
CTG 0 0 0 0 0 0 | CCG 0 0 0 0 0 0 | CAG 4 4 4 3 3 4 | CGG 1 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 4 2 2 3 2 3 | Thr ACT 2 3 3 4 3 4 | Asn AAT 2 2 2 2 1 2 | Ser AGT 2 3 3 2 3 3
ATC 0 2 2 0 2 0 | ACC 1 0 0 0 1 1 | AAC 1 1 1 1 1 1 | AGC 4 2 2 2 2 2
ATA 0 0 0 0 2 0 | ACA 1 1 1 1 0 1 | Lys AAA 4 6 6 5 5 5 | Arg AGA 3 3 3 2 3 2
Met ATG 0 1 1 1 1 1 | ACG 3 3 3 1 3 1 | AAG 2 2 2 2 3 2 | AGG 1 0 0 1 0 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 5 4 4 4 4 6 | Ala GCT 2 3 3 2 3 3 | Asp GAT 3 2 2 2 3 2 | Gly GGT 4 3 3 4 3 2
GTC 2 2 2 3 2 1 | GCC 3 4 4 4 3 3 | GAC 1 2 2 2 3 2 | GGC 1 2 2 2 1 3
GTA 1 1 1 1 1 1 | GCA 2 1 1 1 1 1 | Glu GAA 6 5 5 5 6 5 | GGA 0 0 0 0 0 0
GTG 1 1 1 1 1 1 | GCG 1 1 1 1 1 1 | GAG 0 1 1 1 0 1 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 9 9 9 9 6 8 | Ser TCT 0 0 0 0 0 0 | Tyr TAT 2 2 2 2 2 2 | Cys TGT 3 3 3 3 2 3
TTC 1 1 1 1 3 1 | TCC 0 0 0 0 0 1 | TAC 1 1 1 1 1 1 | TGC 1 1 1 1 3 0
Leu TTA 3 3 3 3 1 1 | TCA 0 0 0 0 1 0 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 0 0 0 0 0 0 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 4 4 4 4 4 4
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 1 1 1 1 2 1 | Pro CCT 1 1 1 1 1 1 | His CAT 1 1 1 1 1 1 | Arg CGT 0 0 0 0 0 1
CTC 1 1 1 1 1 1 | CCC 1 1 1 1 1 1 | CAC 1 1 1 1 1 0 | CGC 3 3 3 3 1 1
CTA 2 2 2 2 2 2 | CCA 1 1 1 1 0 1 | Gln CAA 3 3 3 3 3 3 | CGA 1 1 1 1 4 1
CTG 0 0 0 0 0 1 | CCG 0 0 0 0 0 0 | CAG 4 4 4 4 4 4 | CGG 1 1 1 1 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 4 4 4 4 2 1 | Thr ACT 2 2 2 2 3 1 | Asn AAT 2 2 2 2 2 3 | Ser AGT 2 2 2 2 3 1
ATC 0 0 0 0 2 2 | ACC 1 1 1 1 0 3 | AAC 1 1 1 1 1 1 | AGC 4 4 4 4 2 4
ATA 0 0 0 0 0 1 | ACA 1 1 1 1 1 1 | Lys AAA 4 4 4 4 6 4 | Arg AGA 3 3 3 3 3 4
Met ATG 0 0 0 0 1 1 | ACG 3 3 3 3 3 2 | AAG 2 2 2 2 2 4 | AGG 1 1 1 1 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 5 5 5 5 4 5 | Ala GCT 2 2 2 2 3 2 | Asp GAT 3 3 3 3 2 3 | Gly GGT 4 4 4 4 3 1
GTC 2 2 2 2 2 2 | GCC 3 3 3 3 4 2 | GAC 1 1 1 1 2 2 | GGC 1 1 1 1 2 2
GTA 1 1 1 1 1 1 | GCA 2 2 2 2 1 3 | Glu GAA 6 6 6 6 5 5 | GGA 0 0 0 0 0 2
GTG 1 1 1 1 1 1 | GCG 1 1 1 1 1 2 | GAG 0 0 0 0 1 1 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 9 8 8 9 9 6 | Ser TCT 0 0 0 0 0 0 | Tyr TAT 2 3 3 2 2 2 | Cys TGT 3 2 2 3 3 2
TTC 1 1 1 1 1 3 | TCC 0 0 0 0 0 0 | TAC 1 1 1 1 1 1 | TGC 1 3 3 1 1 3
Leu TTA 3 2 2 3 3 1 | TCA 0 1 1 0 0 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 0 0 0 0 0 0 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 4 4 4 4 4 4
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 1 2 2 1 1 3 | Pro CCT 1 2 2 1 1 1 | His CAT 1 1 1 1 1 0 | Arg CGT 0 0 0 0 0 0
CTC 1 1 1 1 1 1 | CCC 1 0 0 1 1 1 | CAC 1 0 0 1 1 1 | CGC 3 2 2 3 3 1
CTA 2 1 1 2 2 2 | CCA 1 0 0 1 1 0 | Gln CAA 3 3 3 3 3 3 | CGA 1 3 3 1 1 4
CTG 0 0 0 0 0 0 | CCG 0 0 0 0 0 0 | CAG 4 3 3 4 4 4 | CGG 1 0 0 1 1 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 4 2 2 4 4 2 | Thr ACT 2 3 3 2 2 3 | Asn AAT 2 1 1 2 2 2 | Ser AGT 2 3 3 2 2 3
ATC 0 2 2 0 0 2 | ACC 1 1 1 1 1 0 | AAC 1 1 1 1 1 1 | AGC 4 2 2 4 4 2
ATA 0 2 2 0 0 0 | ACA 1 0 0 1 1 1 | Lys AAA 4 5 5 4 4 6 | Arg AGA 3 3 3 3 3 3
Met ATG 0 1 1 0 0 1 | ACG 3 3 3 3 3 3 | AAG 2 3 3 2 2 2 | AGG 1 0 0 1 1 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 5 4 4 5 5 4 | Ala GCT 2 3 3 2 2 3 | Asp GAT 3 3 3 3 3 2 | Gly GGT 4 3 3 4 4 3
GTC 2 2 2 2 2 2 | GCC 3 3 3 3 3 4 | GAC 1 3 3 1 1 2 | GGC 1 1 1 1 1 2
GTA 1 1 1 1 1 1 | GCA 2 1 1 2 2 1 | Glu GAA 6 6 6 6 6 5 | GGA 0 0 0 0 0 0
GTG 1 1 1 1 1 1 | GCG 1 1 1 1 1 1 | GAG 0 0 0 0 0 1 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
----------------------------------------------------------------------------------------------------------------------
Phe TTT 6 6 9 6 9 | Ser TCT 0 0 0 0 0 | Tyr TAT 2 2 2 2 2 | Cys TGT 2 2 3 2 3
TTC 3 3 1 3 1 | TCC 0 0 0 0 0 | TAC 1 1 1 1 1 | TGC 3 3 1 3 1
Leu TTA 1 1 3 1 3 | TCA 1 1 0 1 0 | *** TAA 0 0 0 0 0 | *** TGA 0 0 0 0 0
TTG 0 0 0 0 0 | TCG 0 0 0 0 0 | TAG 0 0 0 0 0 | Trp TGG 4 4 4 4 4
----------------------------------------------------------------------------------------------------------------------
Leu CTT 3 3 1 3 1 | Pro CCT 1 1 1 1 1 | His CAT 0 0 1 0 1 | Arg CGT 0 0 0 0 0
CTC 1 1 1 1 1 | CCC 1 1 1 1 1 | CAC 1 1 1 1 1 | CGC 1 1 3 1 3
CTA 2 2 2 2 2 | CCA 0 0 1 0 1 | Gln CAA 3 3 3 3 3 | CGA 4 4 1 4 1
CTG 0 0 0 0 0 | CCG 0 0 0 0 0 | CAG 4 4 4 4 4 | CGG 0 0 1 0 1
----------------------------------------------------------------------------------------------------------------------
Ile ATT 2 2 4 2 4 | Thr ACT 3 3 2 3 2 | Asn AAT 2 2 2 2 2 | Ser AGT 3 3 2 3 2
ATC 2 2 0 2 0 | ACC 0 0 1 0 1 | AAC 1 1 1 1 1 | AGC 2 2 4 2 4
ATA 0 0 0 0 0 | ACA 1 1 1 1 1 | Lys AAA 6 6 4 6 4 | Arg AGA 3 3 3 3 3
Met ATG 1 1 0 1 0 | ACG 3 3 3 3 3 | AAG 2 2 2 2 2 | AGG 0 0 1 0 1
----------------------------------------------------------------------------------------------------------------------
Val GTT 4 4 5 4 5 | Ala GCT 3 3 2 3 2 | Asp GAT 2 2 3 2 3 | Gly GGT 3 3 4 3 4
GTC 2 2 2 2 2 | GCC 4 4 3 4 3 | GAC 2 2 1 2 1 | GGC 2 2 1 2 1
GTA 1 1 1 1 1 | GCA 1 1 2 1 2 | Glu GAA 5 5 6 5 6 | GGA 0 0 0 0 0
GTG 1 1 1 1 1 | GCG 1 1 1 1 1 | GAG 1 1 0 1 0 | GGG 0 0 0 0 0
----------------------------------------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C1
position 1: T:0.22430 C:0.19626 A:0.28037 G:0.29907
position 2: T:0.28037 C:0.16822 A:0.28972 G:0.26168
position 3: T:0.38318 C:0.20561 A:0.25234 G:0.15888
Average T:0.29595 C:0.19003 A:0.27414 G:0.23988
#2: C2
position 1: T:0.21495 C:0.19626 A:0.28972 G:0.29907
position 2: T:0.27103 C:0.17757 A:0.29907 G:0.25234
position 3: T:0.33645 C:0.24299 A:0.26168 G:0.15888
Average T:0.27414 C:0.20561 A:0.28349 G:0.23676
#3: C3
position 1: T:0.21495 C:0.19626 A:0.28972 G:0.29907
position 2: T:0.27103 C:0.17757 A:0.29907 G:0.25234
position 3: T:0.33645 C:0.24299 A:0.26168 G:0.15888
Average T:0.27414 C:0.20561 A:0.28349 G:0.23676
#4: C4
position 1: T:0.24299 C:0.19626 A:0.25234 G:0.30841
position 2: T:0.29907 C:0.15888 A:0.29907 G:0.24299
position 3: T:0.37383 C:0.22430 A:0.25234 G:0.14953
Average T:0.30530 C:0.19315 A:0.26791 G:0.23364
#5: C5
position 1: T:0.23364 C:0.16822 A:0.29907 G:0.29907
position 2: T:0.28037 C:0.16822 A:0.30841 G:0.24299
position 3: T:0.37383 C:0.21495 A:0.26168 G:0.14953
Average T:0.29595 C:0.18380 A:0.28972 G:0.23053
#6: C6
position 1: T:0.23364 C:0.18692 A:0.28037 G:0.29907
position 2: T:0.29907 C:0.17757 A:0.28972 G:0.23364
position 3: T:0.42056 C:0.18692 A:0.22430 G:0.16822
Average T:0.31776 C:0.18380 A:0.26480 G:0.23364
#7: C7
position 1: T:0.22430 C:0.19626 A:0.28037 G:0.29907
position 2: T:0.28037 C:0.16822 A:0.28972 G:0.26168
position 3: T:0.38318 C:0.20561 A:0.25234 G:0.15888
Average T:0.29595 C:0.19003 A:0.27414 G:0.23988
#8: C8
position 1: T:0.22430 C:0.19626 A:0.28037 G:0.29907
position 2: T:0.28037 C:0.16822 A:0.28972 G:0.26168
position 3: T:0.38318 C:0.20561 A:0.25234 G:0.15888
Average T:0.29595 C:0.19003 A:0.27414 G:0.23988
#9: C9
position 1: T:0.22430 C:0.19626 A:0.28037 G:0.29907
position 2: T:0.28037 C:0.16822 A:0.28972 G:0.26168
position 3: T:0.38318 C:0.20561 A:0.25234 G:0.15888
Average T:0.29595 C:0.19003 A:0.27414 G:0.23988
#10: C10
position 1: T:0.22430 C:0.19626 A:0.28037 G:0.29907
position 2: T:0.28037 C:0.16822 A:0.28972 G:0.26168
position 3: T:0.38318 C:0.20561 A:0.25234 G:0.15888
Average T:0.29595 C:0.19003 A:0.27414 G:0.23988
#11: C11
position 1: T:0.21495 C:0.19626 A:0.28972 G:0.29907
position 2: T:0.26168 C:0.17757 A:0.30841 G:0.25234
position 3: T:0.33645 C:0.24299 A:0.26168 G:0.15888
Average T:0.27103 C:0.20561 A:0.28660 G:0.23676
#12: C12
position 1: T:0.19626 C:0.17757 A:0.30841 G:0.31776
position 2: T:0.27103 C:0.18692 A:0.31776 G:0.22430
position 3: T:0.31776 C:0.22430 A:0.27103 G:0.18692
Average T:0.26168 C:0.19626 A:0.29907 G:0.24299
#13: C13
position 1: T:0.22430 C:0.19626 A:0.28037 G:0.29907
position 2: T:0.28037 C:0.16822 A:0.28972 G:0.26168
position 3: T:0.38318 C:0.20561 A:0.25234 G:0.15888
Average T:0.29595 C:0.19003 A:0.27414 G:0.23988
#14: C14
position 1: T:0.23364 C:0.16822 A:0.29907 G:0.29907
position 2: T:0.28037 C:0.16822 A:0.30841 G:0.24299
position 3: T:0.37383 C:0.21495 A:0.26168 G:0.14953
Average T:0.29595 C:0.18380 A:0.28972 G:0.23053
#15: C15
position 1: T:0.23364 C:0.16822 A:0.29907 G:0.29907
position 2: T:0.28037 C:0.16822 A:0.30841 G:0.24299
position 3: T:0.37383 C:0.21495 A:0.26168 G:0.14953
Average T:0.29595 C:0.18380 A:0.28972 G:0.23053
#16: C16
position 1: T:0.22430 C:0.19626 A:0.28037 G:0.29907
position 2: T:0.28037 C:0.16822 A:0.28972 G:0.26168
position 3: T:0.38318 C:0.20561 A:0.25234 G:0.15888
Average T:0.29595 C:0.19003 A:0.27414 G:0.23988
#17: C17
position 1: T:0.22430 C:0.19626 A:0.28037 G:0.29907
position 2: T:0.28037 C:0.16822 A:0.28972 G:0.26168
position 3: T:0.38318 C:0.20561 A:0.25234 G:0.15888
Average T:0.29595 C:0.19003 A:0.27414 G:0.23988
#18: C18
position 1: T:0.21495 C:0.19626 A:0.28972 G:0.29907
position 2: T:0.27103 C:0.17757 A:0.29907 G:0.25234
position 3: T:0.33645 C:0.24299 A:0.26168 G:0.15888
Average T:0.27414 C:0.20561 A:0.28349 G:0.23676
#19: C19
position 1: T:0.21495 C:0.19626 A:0.28972 G:0.29907
position 2: T:0.27103 C:0.17757 A:0.29907 G:0.25234
position 3: T:0.33645 C:0.24299 A:0.26168 G:0.15888
Average T:0.27414 C:0.20561 A:0.28349 G:0.23676
#20: C20
position 1: T:0.21495 C:0.19626 A:0.28972 G:0.29907
position 2: T:0.27103 C:0.17757 A:0.29907 G:0.25234
position 3: T:0.33645 C:0.24299 A:0.26168 G:0.15888
Average T:0.27414 C:0.20561 A:0.28349 G:0.23676
#21: C21
position 1: T:0.22430 C:0.19626 A:0.28037 G:0.29907
position 2: T:0.28037 C:0.16822 A:0.28972 G:0.26168
position 3: T:0.38318 C:0.20561 A:0.25234 G:0.15888
Average T:0.29595 C:0.19003 A:0.27414 G:0.23988
#22: C22
position 1: T:0.21495 C:0.19626 A:0.28972 G:0.29907
position 2: T:0.27103 C:0.17757 A:0.29907 G:0.25234
position 3: T:0.33645 C:0.24299 A:0.26168 G:0.15888
Average T:0.27414 C:0.20561 A:0.28349 G:0.23676
#23: C23
position 1: T:0.22430 C:0.19626 A:0.28037 G:0.29907
position 2: T:0.28037 C:0.16822 A:0.28972 G:0.26168
position 3: T:0.38318 C:0.20561 A:0.25234 G:0.15888
Average T:0.29595 C:0.19003 A:0.27414 G:0.23988
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 181 | Ser S TCT 0 | Tyr Y TAT 49 | Cys C TGT 57
TTC 38 | TCC 1 | TAC 23 | TGC 45
Leu L TTA 48 | TCA 12 | *** * TAA 0 | *** * TGA 0
TTG 4 | TCG 0 | TAG 0 | Trp W TGG 90
------------------------------------------------------------------------------
Leu L CTT 43 | Pro P CCT 27 | His H CAT 17 | Arg R CGT 2
CTC 23 | CCC 19 | CAC 19 | CGC 46
CTA 41 | CCA 12 | Gln Q CAA 69 | CGA 54
CTG 1 | CCG 0 | CAG 88 | CGG 10
------------------------------------------------------------------------------
Ile I ATT 67 | Thr T ACT 59 | Asn N AAT 44 | Ser S AGT 56
ATC 22 | ACC 17 | AAC 23 | AGC 68
ATA 7 | ACA 20 | Lys K AAA 111 | Arg R AGA 68
Met M ATG 13 | ACG 64 | AAG 51 | AGG 13
------------------------------------------------------------------------------
Val V GTT 105 | Ala A GCT 57 | Asp D GAT 60 | Gly G GGT 77
GTC 46 | GCC 76 | GAC 39 | GGC 34
GTA 23 | GCA 35 | Glu E GAA 128 | GGA 2
GTG 23 | GCG 24 | GAG 10 | GGG 0
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.22267 C:0.19139 A:0.28566 G:0.30028
position 2: T:0.27834 C:0.17188 A:0.29703 G:0.25274
position 3: T:0.36611 C:0.21902 A:0.25599 G:0.15888
Average T:0.28904 C:0.19409 A:0.27956 G:0.23730
Model 1: NearlyNeutral (2 categories)
TREE # 1: (1, 10, 13, 16, 17, 21, 23, 7, 8, 9, (((11, (18, 19, 2, 20, 22, 3)), (12, (14, 15, 5))), (4, 6))); MP score: 86
lnL(ntime: 30 np: 33): -900.542915 +0.000000
24..1 24..10 24..13 24..16 24..17 24..21 24..23 24..7 24..8 24..9 24..25 25..26 26..27 27..11 27..28 28..18 28..19 28..2 28..20 28..22 28..3 26..29 29..12 29..30 30..14 30..15 30..5 25..31 31..4 31..6
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.257287 0.096791 0.030721 0.000004 0.010497 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.048570 0.436675 0.134373 0.000004 0.000004 0.000004 0.062679 0.022420 0.133106 1.520357 0.881372 0.057642
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.233197
(1: 0.000004, 10: 0.000004, 13: 0.000004, 16: 0.000004, 17: 0.000004, 21: 0.000004, 23: 0.000004, 7: 0.000004, 8: 0.000004, 9: 0.000004, (((11: 0.000004, (18: 0.000004, 19: 0.000004, 2: 0.000004, 20: 0.000004, 22: 0.000004, 3: 0.000004): 0.010497): 0.030721, (12: 0.436675, (14: 0.000004, 15: 0.000004, 5: 0.000004): 0.134373): 0.048570): 0.096791, (4: 0.022420, 6: 0.133106): 0.062679): 0.257287);
(C1: 0.000004, C10: 0.000004, C13: 0.000004, C16: 0.000004, C17: 0.000004, C21: 0.000004, C23: 0.000004, C7: 0.000004, C8: 0.000004, C9: 0.000004, (((C11: 0.000004, (C18: 0.000004, C19: 0.000004, C2: 0.000004, C20: 0.000004, C22: 0.000004, C3: 0.000004): 0.010497): 0.030721, (C12: 0.436675, (C14: 0.000004, C15: 0.000004, C5: 0.000004): 0.134373): 0.048570): 0.096791, (C4: 0.022420, C6: 0.133106): 0.062679): 0.257287);
Detailed output identifying parameters
kappa (ts/tv) = 1.52036
MLEs of dN/dS (w) for site classes (K=2)
p: 0.88137 0.11863
w: 0.05764 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
24..1 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
24..10 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
24..13 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
24..16 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
24..17 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
24..21 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
24..23 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
24..7 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
24..8 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
24..9 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
24..25 0.257 247.2 73.8 0.1694 0.0403 0.2380 10.0 17.6
25..26 0.097 247.2 73.8 0.1694 0.0152 0.0895 3.7 6.6
26..27 0.031 247.2 73.8 0.1694 0.0048 0.0284 1.2 2.1
27..11 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
27..28 0.010 247.2 73.8 0.1694 0.0016 0.0097 0.4 0.7
28..18 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
28..19 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
28..2 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
28..20 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
28..22 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
28..3 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
26..29 0.049 247.2 73.8 0.1694 0.0076 0.0449 1.9 3.3
29..12 0.437 247.2 73.8 0.1694 0.0684 0.4039 16.9 29.8
29..30 0.134 247.2 73.8 0.1694 0.0211 0.1243 5.2 9.2
30..14 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
30..15 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
30..5 0.000 247.2 73.8 0.1694 0.0000 0.0000 0.0 0.0
25..31 0.063 247.2 73.8 0.1694 0.0098 0.0580 2.4 4.3
31..4 0.022 247.2 73.8 0.1694 0.0035 0.0207 0.9 1.5
31..6 0.133 247.2 73.8 0.1694 0.0209 0.1231 5.2 9.1
Time used: 0:38
Model 2: PositiveSelection (3 categories)
TREE # 1: (1, 10, 13, 16, 17, 21, 23, 7, 8, 9, (((11, (18, 19, 2, 20, 22, 3)), (12, (14, 15, 5))), (4, 6))); MP score: 86
lnL(ntime: 30 np: 35): -900.189021 +0.000000
24..1 24..10 24..13 24..16 24..17 24..21 24..23 24..7 24..8 24..9 24..25 25..26 26..27 27..11 27..28 28..18 28..19 28..2 28..20 28..22 28..3 26..29 29..12 29..30 30..14 30..15 30..5 25..31 31..4 31..6
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.261869 0.098281 0.031455 0.000004 0.010663 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.047992 0.446996 0.137444 0.000004 0.000004 0.000004 0.063062 0.023131 0.135403 1.580129 0.908691 0.000000 0.069307 1.466906
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.256376
(1: 0.000004, 10: 0.000004, 13: 0.000004, 16: 0.000004, 17: 0.000004, 21: 0.000004, 23: 0.000004, 7: 0.000004, 8: 0.000004, 9: 0.000004, (((11: 0.000004, (18: 0.000004, 19: 0.000004, 2: 0.000004, 20: 0.000004, 22: 0.000004, 3: 0.000004): 0.010663): 0.031455, (12: 0.446996, (14: 0.000004, 15: 0.000004, 5: 0.000004): 0.137444): 0.047992): 0.098281, (4: 0.023131, 6: 0.135403): 0.063062): 0.261869);
(C1: 0.000004, C10: 0.000004, C13: 0.000004, C16: 0.000004, C17: 0.000004, C21: 0.000004, C23: 0.000004, C7: 0.000004, C8: 0.000004, C9: 0.000004, (((C11: 0.000004, (C18: 0.000004, C19: 0.000004, C2: 0.000004, C20: 0.000004, C22: 0.000004, C3: 0.000004): 0.010663): 0.031455, (C12: 0.446996, (C14: 0.000004, C15: 0.000004, C5: 0.000004): 0.137444): 0.047992): 0.098281, (C4: 0.023131, C6: 0.135403): 0.063062): 0.261869);
Detailed output identifying parameters
kappa (ts/tv) = 1.58013
MLEs of dN/dS (w) for site classes (K=3)
p: 0.90869 0.00000 0.09131
w: 0.06931 1.00000 1.46691
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
24..1 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
24..10 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
24..13 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
24..16 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
24..17 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
24..21 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
24..23 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
24..7 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
24..8 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
24..9 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
24..25 0.262 246.7 74.3 0.1969 0.0449 0.2281 11.1 16.9
25..26 0.098 246.7 74.3 0.1969 0.0169 0.0856 4.2 6.4
26..27 0.031 246.7 74.3 0.1969 0.0054 0.0274 1.3 2.0
27..11 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
27..28 0.011 246.7 74.3 0.1969 0.0018 0.0093 0.5 0.7
28..18 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
28..19 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
28..2 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
28..20 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
28..22 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
28..3 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
26..29 0.048 246.7 74.3 0.1969 0.0082 0.0418 2.0 3.1
29..12 0.447 246.7 74.3 0.1969 0.0767 0.3893 18.9 28.9
29..30 0.137 246.7 74.3 0.1969 0.0236 0.1197 5.8 8.9
30..14 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
30..15 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
30..5 0.000 246.7 74.3 0.1969 0.0000 0.0000 0.0 0.0
25..31 0.063 246.7 74.3 0.1969 0.0108 0.0549 2.7 4.1
31..4 0.023 246.7 74.3 0.1969 0.0040 0.0201 1.0 1.5
31..6 0.135 246.7 74.3 0.1969 0.0232 0.1179 5.7 8.8
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
2 W 0.985* 1.446
13 R 0.900 1.328
32 S 1.000** 1.466
62 C 0.859 1.269
65 P 0.996** 1.462
68 E 0.986* 1.447
98 F 0.726 1.083
101 T 0.893 1.317
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
32 S 0.615 1.871 +- 1.222
65 P 0.616 1.933 +- 1.333
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 0.993 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.479 0.255 0.115 0.056 0.032 0.020 0.014 0.011 0.009 0.008
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.014
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.025 0.421
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.068 0.303 0.163
sum of density on p0-p1 = 1.000000
Time used: 2:17
Model 7: beta (10 categories)
TREE # 1: (1, 10, 13, 16, 17, 21, 23, 7, 8, 9, (((11, (18, 19, 2, 20, 22, 3)), (12, (14, 15, 5))), (4, 6))); MP score: 86
lnL(ntime: 30 np: 33): -901.920389 +0.000000
24..1 24..10 24..13 24..16 24..17 24..21 24..23 24..7 24..8 24..9 24..25 25..26 26..27 27..11 27..28 28..18 28..19 28..2 28..20 28..22 28..3 26..29 29..12 29..30 30..14 30..15 30..5 25..31 31..4 31..6
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.253381 0.095751 0.029762 0.000004 0.010352 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.050300 0.427773 0.130524 0.000004 0.000004 0.000004 0.062608 0.021386 0.131733 1.525561 0.158604 0.772814
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.213650
(1: 0.000004, 10: 0.000004, 13: 0.000004, 16: 0.000004, 17: 0.000004, 21: 0.000004, 23: 0.000004, 7: 0.000004, 8: 0.000004, 9: 0.000004, (((11: 0.000004, (18: 0.000004, 19: 0.000004, 2: 0.000004, 20: 0.000004, 22: 0.000004, 3: 0.000004): 0.010352): 0.029762, (12: 0.427773, (14: 0.000004, 15: 0.000004, 5: 0.000004): 0.130524): 0.050300): 0.095751, (4: 0.021386, 6: 0.131733): 0.062608): 0.253381);
(C1: 0.000004, C10: 0.000004, C13: 0.000004, C16: 0.000004, C17: 0.000004, C21: 0.000004, C23: 0.000004, C7: 0.000004, C8: 0.000004, C9: 0.000004, (((C11: 0.000004, (C18: 0.000004, C19: 0.000004, C2: 0.000004, C20: 0.000004, C22: 0.000004, C3: 0.000004): 0.010352): 0.029762, (C12: 0.427773, (C14: 0.000004, C15: 0.000004, C5: 0.000004): 0.130524): 0.050300): 0.095751, (C4: 0.021386, C6: 0.131733): 0.062608): 0.253381);
Detailed output identifying parameters
kappa (ts/tv) = 1.52556
Parameters in M7 (beta):
p = 0.15860 q = 0.77281
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00000 0.00001 0.00024 0.00199 0.00968 0.03414 0.09664 0.23130 0.47788 0.83914
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
24..1 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
24..10 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
24..13 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
24..16 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
24..17 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
24..21 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
24..23 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
24..7 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
24..8 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
24..9 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
24..25 0.253 247.2 73.8 0.1691 0.0396 0.2345 9.8 17.3
25..26 0.096 247.2 73.8 0.1691 0.0150 0.0886 3.7 6.5
26..27 0.030 247.2 73.8 0.1691 0.0047 0.0275 1.2 2.0
27..11 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
27..28 0.010 247.2 73.8 0.1691 0.0016 0.0096 0.4 0.7
28..18 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
28..19 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
28..2 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
28..20 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
28..22 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
28..3 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
26..29 0.050 247.2 73.8 0.1691 0.0079 0.0465 1.9 3.4
29..12 0.428 247.2 73.8 0.1691 0.0669 0.3958 16.5 29.2
29..30 0.131 247.2 73.8 0.1691 0.0204 0.1208 5.0 8.9
30..14 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
30..15 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
30..5 0.000 247.2 73.8 0.1691 0.0000 0.0000 0.0 0.0
25..31 0.063 247.2 73.8 0.1691 0.0098 0.0579 2.4 4.3
31..4 0.021 247.2 73.8 0.1691 0.0033 0.0198 0.8 1.5
31..6 0.132 247.2 73.8 0.1691 0.0206 0.1219 5.1 9.0
Time used: 5:29
Model 8: beta&w>1 (11 categories)
TREE # 1: (1, 10, 13, 16, 17, 21, 23, 7, 8, 9, (((11, (18, 19, 2, 20, 22, 3)), (12, (14, 15, 5))), (4, 6))); MP score: 86
lnL(ntime: 30 np: 35): -900.191035 +0.000000
24..1 24..10 24..13 24..16 24..17 24..21 24..23 24..7 24..8 24..9 24..25 25..26 26..27 27..11 27..28 28..18 28..19 28..2 28..20 28..22 28..3 26..29 29..12 29..30 30..14 30..15 30..5 25..31 31..4 31..6
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.261984 0.098349 0.031446 0.000004 0.010664 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.047982 0.447314 0.137488 0.000004 0.000004 0.000004 0.063076 0.023124 0.135524 1.580618 0.910747 7.571675 99.000000 1.488663
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.257029
(1: 0.000004, 10: 0.000004, 13: 0.000004, 16: 0.000004, 17: 0.000004, 21: 0.000004, 23: 0.000004, 7: 0.000004, 8: 0.000004, 9: 0.000004, (((11: 0.000004, (18: 0.000004, 19: 0.000004, 2: 0.000004, 20: 0.000004, 22: 0.000004, 3: 0.000004): 0.010664): 0.031446, (12: 0.447314, (14: 0.000004, 15: 0.000004, 5: 0.000004): 0.137488): 0.047982): 0.098349, (4: 0.023124, 6: 0.135524): 0.063076): 0.261984);
(C1: 0.000004, C10: 0.000004, C13: 0.000004, C16: 0.000004, C17: 0.000004, C21: 0.000004, C23: 0.000004, C7: 0.000004, C8: 0.000004, C9: 0.000004, (((C11: 0.000004, (C18: 0.000004, C19: 0.000004, C2: 0.000004, C20: 0.000004, C22: 0.000004, C3: 0.000004): 0.010664): 0.031446, (C12: 0.447314, (C14: 0.000004, C15: 0.000004, C5: 0.000004): 0.137488): 0.047982): 0.098349, (C4: 0.023124, C6: 0.135524): 0.063076): 0.261984);
Detailed output identifying parameters
kappa (ts/tv) = 1.58062
Parameters in M8 (beta&w>1):
p0 = 0.91075 p = 7.57168 q = 99.00000
(p1 = 0.08925) w = 1.48866
MLEs of dN/dS (w) for site classes (K=11)
p: 0.09107 0.09107 0.09107 0.09107 0.09107 0.09107 0.09107 0.09107 0.09107 0.09107 0.08925
w: 0.03535 0.04593 0.05312 0.05936 0.06535 0.07148 0.07819 0.08608 0.09661 0.11589 1.48866
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
24..1 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
24..10 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
24..13 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
24..16 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
24..17 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
24..21 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
24..23 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
24..7 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
24..8 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
24..9 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
24..25 0.262 246.7 74.3 0.1973 0.0450 0.2280 11.1 16.9
25..26 0.098 246.7 74.3 0.1973 0.0169 0.0856 4.2 6.4
26..27 0.031 246.7 74.3 0.1973 0.0054 0.0274 1.3 2.0
27..11 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
27..28 0.011 246.7 74.3 0.1973 0.0018 0.0093 0.5 0.7
28..18 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
28..19 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
28..2 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
28..20 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
28..22 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
28..3 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
26..29 0.048 246.7 74.3 0.1973 0.0082 0.0418 2.0 3.1
29..12 0.447 246.7 74.3 0.1973 0.0768 0.3893 18.9 28.9
29..30 0.137 246.7 74.3 0.1973 0.0236 0.1196 5.8 8.9
30..14 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
30..15 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
30..5 0.000 246.7 74.3 0.1973 0.0000 0.0000 0.0 0.0
25..31 0.063 246.7 74.3 0.1973 0.0108 0.0549 2.7 4.1
31..4 0.023 246.7 74.3 0.1973 0.0040 0.0201 1.0 1.5
31..6 0.136 246.7 74.3 0.1973 0.0233 0.1179 5.7 8.8
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
2 W 0.979* 1.460
13 R 0.887 1.330
32 S 0.999** 1.488
62 C 0.841 1.265
65 P 0.995** 1.481
68 E 0.980* 1.461
98 F 0.696 1.061
101 T 0.878 1.317
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
2 W 0.562 1.461 +- 0.944
13 R 0.532 1.444 +- 1.116
32 S 0.868 2.124 +- 1.096
65 P 0.837 2.088 +- 1.143
68 E 0.606 1.567 +- 1.008
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.049 0.951
p : 0.921 0.079 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.023 0.080 0.126 0.147 0.152 0.154 0.156 0.162
ws: 0.461 0.350 0.122 0.039 0.014 0.006 0.003 0.002 0.001 0.001
Time used: 11:27
Model 1: NearlyNeutral -900.542915 Model 2: PositiveSelection -900.189021 Model 7: beta -901.920389 Model 8: beta&w>1 -900.191035 Model 2 vs 1 .707788 Model 8 vs 7 3.458708
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
