--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1660.99 -1690.70
2 -1663.91 -1686.03
--------------------------------------
TOTAL -1661.63 -1690.02
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.599662 0.003607 0.487130 0.722433 0.596048 1284.92 1357.45 1.000
r(A<->C){all} 0.124829 0.000788 0.069521 0.178156 0.122810 844.71 935.40 1.002
r(A<->G){all} 0.210341 0.001242 0.141826 0.280114 0.208140 744.89 796.55 1.000
r(A<->T){all} 0.146455 0.000685 0.096114 0.197162 0.144555 1073.46 1146.21 1.000
r(C<->G){all} 0.124336 0.001032 0.063290 0.187711 0.122339 757.89 772.16 1.000
r(C<->T){all} 0.274344 0.001439 0.197504 0.344036 0.272657 717.31 744.82 1.000
r(G<->T){all} 0.119695 0.000737 0.071973 0.176653 0.117801 792.73 929.75 1.000
pi(A){all} 0.278024 0.000336 0.240710 0.313094 0.277435 1214.43 1223.56 1.000
pi(C){all} 0.223619 0.000273 0.193331 0.258340 0.223376 1124.81 1125.40 1.000
pi(G){all} 0.191485 0.000247 0.160068 0.221613 0.191450 1047.02 1144.45 1.000
pi(T){all} 0.306871 0.000349 0.271040 0.344082 0.306356 1007.32 1097.51 1.001
alpha{1,2} 1.582460 0.830411 0.410390 3.442103 1.344566 1276.93 1303.18 1.000
alpha{3} 1.450089 0.825114 0.327144 3.180875 1.212092 1016.56 1171.63 1.001
pinvar{all} 0.173329 0.011015 0.000200 0.354673 0.165884 978.83 1017.88 1.002
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -122.888608
Model 2: PositiveSelection -112.932741
Model 7: beta -121.238491
Model 8: beta&w>1 -112.939663
Model 2 vs 1 19.911734
Additional information for M1 vs M2:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
9 L 1.000** 998.874
10 Y 1.000** 999.000
12 L 1.000** 998.852
14 N 1.000** 999.000
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
2 L 0.500 5.298 +- 4.641
5 S 0.860 8.637 +- 3.247
6 L 0.500 5.298 +- 4.641
9 L 0.992** 9.830 +- 1.211
10 Y 1.000** 9.902 +- 0.910
12 L 0.986* 9.782 +- 1.377
14 N 0.997** 9.881 +- 1.006
Model 8 vs 7 16.597656
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
9 L 1.000** 998.846
10 Y 1.000** 999.000
12 L 1.000** 998.864
14 N 1.000** 999.000
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
2 L 0.557 5.692 +- 4.732
5 S 0.914 9.096 +- 2.723
6 L 0.557 5.692 +- 4.732
9 L 0.997** 9.855 +- 1.063
10 Y 1.000** 9.886 +- 0.924
12 L 0.994** 9.828 +- 1.175
14 N 0.999** 9.878 +- 0.964
-- Starting log on Wed Nov 02 20:10:53 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.05 sec, SCORE=993, Nseq=21, Len=172
C1 ---------------------------------MAALGHKAKLAAVFIGP
C2 ---------------------------------MAALGHKAKLAAVFIGP
C3 --------------------------------------------------
C4 ---------------------------------MALIGPKTTIAAVFIGP
C5 ---------------------------------MALIGPKTTIAAVFIGP
C6 --------------------------------------------------
C7 ---------------------------------MAIIGPKTTIAAVFIGP
C8 MRIDYHSPCRKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGP
C9 MRIDYHSPCRKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGP
C10 MRIDYHSPCRKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGP
C11 MRIDYHSLSWKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGP
C12 ---------------------------------MAVLGPKATFAAVFIGP
C13 ---------------------------------MALIGPKTTIAAVFIGP
C14 ---------------------------------MAVLGPKATLAAVFIGP
C15 --------------------------------------------------
C16 ---------------------------------MAALGHKAKLAAVFIGP
C17 --------------------------------------------------
C18 ---------------------------------MALIGPKTTIAAVFIGP
C19 ---------------------------------MALIGPKTTIAAVFIGP
C20 ---------------------------------MALIGPKTTIAAVFIGP
C21 ---------------------------------MALIGPKTTIAAVFIGP
C1 FIVACMLGISLVYLYQLQNQIFHVNNTIRVTGKPAKLYYSLSTSVTPVAT
C2 FIVACMLGISLVYLYQLQVQIFHVNNTIRVTGKPATVSYTLSTPVTPVAT
C3 -----MLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C4 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C5 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C6 -----MLGIGLVYSLQLQV-------------------------------
C7 FIVACMLGIGLVYLLQLQVQIFHVNDTIRVTGKPATVSYTISTPVTPSAT
C8 FIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C9 FIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C10 FIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C11 FIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C12 FIVACMLGIGLVYLYQVQVKIFHVDDTLRVTGKPATVSYTTSTPVTPSAT
C13 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C14 FIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C15 -----MLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C16 FIVACMLGISLVYLYQLQVQIFHVNNTIRVTGKPATVSYTLSTPVTPVAT
C17 -----MLGIGLVYSLQLQV-------------------------------
C18 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C19 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C20 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C21 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
****.*** *:*
C1 TLDGTTYTLIRPTSSYTRVYLGKTRGFDTSTFGPKVLNYITSSKPHLNSG
C2 TLDGTTYTLIRPTSSYTRVYLGKTRGFDTSTFGPKVLNYITSSKPHLNSG
C3 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C4 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C5 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C6 --------------------------------------------------
C7 TLDGTTYTLIRPTSSYTRVHLGSPRGFDTSTFGPKTLDYTTSSKPHLNSG
C8 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C9 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C10 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C11 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C12 TLDGTTYTLIRPTSSYTRVYLGSPRGFDTSTFGPKTLDYITSSKPHLNSG
C13 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C14 TLDGTTYTLIRPTSSYTRVYLGKTRGFDTSTFGPKVLDYITSSKPHLNSG
C15 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C16 TLDGTTYTLIRPTSSYTRVYLGKTRGFDTSTFGPKVLNYITSSKPHLNSG
C17 --------------------------------------------------
C18 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C19 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C20 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C21 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C1 RPYTFRHMPKYMKGLV------
C2 RPYTFRHMPKYMTPSATWRFGM
C3 VHILLRHCPGI-----------
C4 RPYTLRHLPKYMTPPATWRFGL
C5 RPYTLRHLPKYMTPPATWRFGL
C6 ----------------------
C7 RPYTLRHLPKYMTPPAIWRFGM
C8 VHILLRHCPGI-----------
C9 VHILLRHCPGI-----------
C10 VHILLRHCPGI-----------
C11 VHILLRHCPGI-----------
C12 RPYSLKALPRHMRPPATWRYGM
C13 RPYTLRHLPKYMTPPATWRFGM
C14 RPYSLSC---------------
C15 VHILLRHCPGI-----------
C16 RPYTFRHMPKYMKGLV------
C17 ----------------------
C18 RPYTLRHLPKYMTPPATWRFGL
C19 RPYTLRHLPKYMTPPATWRFGL
C20 RPYTLRHLPKYMTPPATWRFGL
C21 RPYTLRHLPKYMTPPATWRFGL
-- Starting log on Wed Nov 02 20:12:59 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.11 sec, SCORE=991, Nseq=21, Len=172
C1 ---------------------------------MAALGHKAKLAAVFIGP
C2 ---------------------------------MAALGHKAKLAAVFIGP
C3 --------------------------------------------------
C4 ---------------------------------MALIGPKTTIAAVFIGP
C5 ---------------------------------MALIGPKTTIAAVFIGP
C6 --------------------------------------------------
C7 ---------------------------------MAIIGPKTTIAAVFIGP
C8 MRIDYHSPCRKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGP
C9 MRIDYHSPCRKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGP
C10 MRIDYHSPCRKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGP
C11 MRIDYHSLSWKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGP
C12 ---------------------------------MAVLGPKATFAAVFIGP
C13 ---------------------------------MALIGPKTTIAAVFIGP
C14 ---------------------------------MAVLGPKATLAAVFIGP
C15 --------------------------------------------------
C16 ---------------------------------MAALGHKAKLAAVFIGP
C17 --------------------------------------------------
C18 ---------------------------------MALIGPKTTIAAVFIGP
C19 ---------------------------------MALIGPKTTIAAVFIGP
C20 ---------------------------------MALIGPKTTIAAVFIGP
C21 ---------------------------------MALIGPKTTIAAVFIGP
C1 FIVACMLGISLVYLYQLQNQIFHVNNTIRVTGKPAKLYYSLSTSVTPVAT
C2 FIVACMLGISLVYLYQLQVQIFHVNNTIRVTGKPATVSYTLSTPVTPVAT
C3 -----MLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C4 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C5 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C6 -----MLGIGLVYSLQLQV-------------------------------
C7 FIVACMLGIGLVYLLQLQVQIFHVNDTIRVTGKPATVSYTISTPVTPSAT
C8 FIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C9 FIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C10 FIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C11 FIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C12 FIVACMLGIGLVYLYQVQVKIFHVDDTLRVTGKPATVSYTTSTPVTPSAT
C13 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C14 FIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C15 -----MLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C16 FIVACMLGISLVYLYQLQVQIFHVNNTIRVTGKPATVSYTLSTPVTPVAT
C17 -----MLGIGLVYSLQLQV-------------------------------
C18 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C19 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C20 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C21 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
****.*** *:*
C1 TLDGTTYTLIRPTSSYTRVYLGKTRGFDTSTFGPKVLNYITSSKPHLNSG
C2 TLDGTTYTLIRPTSSYTRVYLGKTRGFDTSTFGPKVLNYITSSKPHLNSG
C3 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C4 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C5 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C6 --------------------------------------------------
C7 TLDGTTYTLIRPTSSYTRVHLGSPRGFDTSTFGPKTLDYTTSSKPHLNSG
C8 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C9 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C10 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C11 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C12 TLDGTTYTLIRPTSSYTRVYLGSPRGFDTSTFGPKTLDYITSSKPHLNSG
C13 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C14 TLDGTTYTLIRPTSSYTRVYLGKTRGFDTSTFGPKVLDYITSSKPHLNSG
C15 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C16 TLDGTTYTLIRPTSSYTRVYLGKTRGFDTSTFGPKVLNYITSSKPHLNSG
C17 --------------------------------------------------
C18 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C19 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C20 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C21 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C1 RPYTFRHMPKYMKGLV------
C2 RPYTFRHMPKYMTPSATWRFGM
C3 VHILLRHCPGI-----------
C4 RPYTLRHLPKYMTPPATWRFGL
C5 RPYTLRHLPKYMTPPATWRFGL
C6 ----------------------
C7 RPYTLRHLPKYMTPPAIWRFGM
C8 VHILLRHCPGI-----------
C9 VHILLRHCPGI-----------
C10 VHILLRHCPGI-----------
C11 VHILLRHCPGI-----------
C12 RPYSLKALPRHMRPPATWRYGM
C13 RPYTLRHLPKYMTPPATWRFGM
C14 RPYSLSC---------------
C15 VHILLRHCPGI-----------
C16 RPYTFRHMPKYMKGLV------
C17 ----------------------
C18 RPYTLRHLPKYMTPPATWRFGL
C19 RPYTLRHLPKYMTPPATWRFGL
C20 RPYTLRHLPKYMTPPATWRFGL
C21 RPYTLRHLPKYMTPPATWRFGL
-- Starting log on Wed Nov 02 21:30:04 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus.result/gapped_alignment/codeml,A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 21 taxa and 516 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C1
Taxon 2 -> C10
Taxon 3 -> C11
Taxon 4 -> C12
Taxon 5 -> C13
Taxon 6 -> C14
Taxon 7 -> C15
Taxon 8 -> C16
Taxon 9 -> C17
Taxon 10 -> C18
Taxon 11 -> C19
Taxon 12 -> C2
Taxon 13 -> C20
Taxon 14 -> C21
Taxon 15 -> C3
Taxon 16 -> C4
Taxon 17 -> C5
Taxon 18 -> C6
Taxon 19 -> C7
Taxon 20 -> C8
Taxon 21 -> C9
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1667424606
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 323021222
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 8565996087
Seed = 1688948736
Swapseed = 1667424606
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 64 unique site patterns
Division 2 has 52 unique site patterns
Division 3 has 81 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -3833.573772 -- 64.149878
Chain 2 -- -3553.096118 -- 64.149878
Chain 3 -- -3658.220205 -- 64.149878
Chain 4 -- -3307.904025 -- 64.149878
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -3670.048133 -- 64.149878
Chain 2 -- -3606.226692 -- 64.149878
Chain 3 -- -3838.181127 -- 64.149878
Chain 4 -- -3434.355223 -- 64.149878
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-3833.574] (-3553.096) (-3658.220) (-3307.904) * [-3670.048] (-3606.227) (-3838.181) (-3434.355)
1000 -- (-1737.771) (-1770.851) (-1758.195) [-1693.936] * (-1723.369) [-1711.351] (-1731.637) (-1720.867) -- 0:16:39
2000 -- [-1675.211] (-1693.332) (-1703.028) (-1692.626) * (-1679.998) [-1671.452] (-1712.381) (-1678.719) -- 0:16:38
3000 -- (-1680.778) (-1699.078) [-1668.308] (-1682.076) * [-1672.488] (-1672.077) (-1677.427) (-1679.827) -- 0:16:37
4000 -- [-1671.798] (-1692.692) (-1671.608) (-1675.515) * (-1673.438) (-1677.329) [-1678.277] (-1678.766) -- 0:16:36
5000 -- (-1679.438) (-1691.416) (-1677.006) [-1669.593] * (-1690.716) (-1688.382) [-1680.415] (-1676.415) -- 0:16:35
Average standard deviation of split frequencies: 0.072080
6000 -- (-1670.330) (-1670.877) (-1672.880) [-1669.048] * (-1674.714) (-1676.604) (-1686.727) [-1665.521] -- 0:16:34
7000 -- (-1675.672) (-1668.716) [-1679.198] (-1679.911) * (-1673.503) (-1680.220) (-1691.498) [-1670.696] -- 0:16:33
8000 -- (-1692.198) (-1690.382) [-1669.931] (-1671.594) * [-1668.339] (-1696.904) (-1676.438) (-1674.248) -- 0:16:32
9000 -- [-1666.422] (-1682.414) (-1683.830) (-1686.876) * (-1679.263) [-1672.903] (-1671.899) (-1691.343) -- 0:16:31
10000 -- [-1666.462] (-1690.057) (-1677.679) (-1680.813) * [-1682.956] (-1673.699) (-1685.184) (-1685.083) -- 0:16:30
Average standard deviation of split frequencies: 0.058511
11000 -- [-1671.570] (-1681.807) (-1670.871) (-1681.946) * [-1670.617] (-1694.026) (-1668.260) (-1688.877) -- 0:16:29
12000 -- [-1675.195] (-1683.940) (-1669.489) (-1673.338) * (-1679.420) (-1675.461) [-1657.608] (-1683.157) -- 0:16:28
13000 -- (-1685.614) (-1685.123) (-1677.511) [-1670.591] * (-1683.053) (-1694.657) (-1682.991) [-1659.722] -- 0:16:27
14000 -- (-1685.842) (-1675.953) [-1676.936] (-1679.181) * [-1678.122] (-1673.911) (-1677.847) (-1678.268) -- 0:16:26
15000 -- (-1677.408) [-1683.827] (-1687.162) (-1692.715) * (-1687.654) [-1666.517] (-1669.916) (-1694.397) -- 0:16:25
Average standard deviation of split frequencies: 0.056295
16000 -- (-1697.586) (-1690.291) (-1678.920) [-1670.805] * [-1668.567] (-1664.423) (-1673.209) (-1681.799) -- 0:16:24
17000 -- (-1691.429) (-1681.625) [-1678.150] (-1673.524) * (-1672.334) (-1676.054) [-1672.140] (-1690.189) -- 0:16:23
18000 -- (-1666.890) [-1680.991] (-1678.703) (-1674.156) * [-1671.376] (-1668.383) (-1688.591) (-1676.720) -- 0:16:22
19000 -- [-1665.500] (-1679.215) (-1691.246) (-1676.173) * (-1680.632) (-1678.914) (-1684.852) [-1667.877] -- 0:16:21
20000 -- [-1659.930] (-1680.901) (-1684.140) (-1671.448) * (-1694.523) (-1676.957) (-1678.291) [-1678.570] -- 0:16:20
Average standard deviation of split frequencies: 0.054521
21000 -- (-1675.829) [-1681.906] (-1678.490) (-1679.552) * (-1684.590) (-1696.102) [-1675.987] (-1678.771) -- 0:16:19
22000 -- (-1674.236) [-1676.523] (-1679.644) (-1689.392) * (-1678.418) (-1673.104) [-1671.689] (-1684.748) -- 0:16:18
23000 -- (-1680.198) (-1689.195) [-1675.079] (-1685.607) * (-1678.072) (-1683.704) [-1677.409] (-1682.412) -- 0:16:17
24000 -- (-1688.839) (-1669.699) [-1671.168] (-1667.867) * (-1698.161) (-1682.064) (-1680.372) [-1667.004] -- 0:16:16
25000 -- [-1664.375] (-1679.020) (-1689.724) (-1674.702) * (-1681.274) (-1687.857) (-1680.553) [-1679.873] -- 0:16:53
Average standard deviation of split frequencies: 0.043788
26000 -- [-1669.845] (-1679.203) (-1675.355) (-1671.767) * (-1682.893) (-1683.066) [-1682.139] (-1694.122) -- 0:16:51
27000 -- (-1673.534) (-1680.605) (-1695.843) [-1664.007] * (-1677.453) (-1681.483) [-1671.410] (-1685.964) -- 0:16:49
28000 -- (-1668.314) (-1680.990) [-1673.533] (-1680.042) * (-1681.609) (-1682.873) [-1678.755] (-1667.115) -- 0:16:46
29000 -- [-1665.503] (-1682.462) (-1685.448) (-1678.379) * [-1667.482] (-1681.177) (-1693.643) (-1667.290) -- 0:16:44
30000 -- (-1683.439) (-1707.377) (-1677.803) [-1673.561] * (-1675.257) [-1674.681] (-1676.327) (-1687.069) -- 0:16:42
Average standard deviation of split frequencies: 0.045781
31000 -- (-1682.522) (-1673.555) (-1672.118) [-1666.077] * (-1675.854) (-1679.437) (-1687.289) [-1683.290] -- 0:16:40
32000 -- (-1679.177) (-1694.682) (-1691.177) [-1672.768] * (-1671.952) [-1667.872] (-1687.419) (-1680.731) -- 0:16:38
33000 -- (-1676.348) (-1675.184) [-1675.706] (-1675.721) * (-1684.460) [-1669.711] (-1699.137) (-1681.854) -- 0:16:36
34000 -- [-1685.657] (-1676.967) (-1669.288) (-1683.933) * [-1669.589] (-1676.637) (-1697.903) (-1662.383) -- 0:16:34
35000 -- (-1680.847) (-1674.711) (-1678.062) [-1672.579] * (-1682.997) (-1685.149) (-1682.309) [-1679.584] -- 0:17:00
Average standard deviation of split frequencies: 0.047468
36000 -- (-1683.325) (-1674.721) (-1681.488) [-1666.208] * (-1683.423) (-1702.808) (-1678.049) [-1677.380] -- 0:16:57
37000 -- (-1681.960) [-1676.906] (-1678.180) (-1689.480) * (-1681.857) (-1678.084) [-1678.529] (-1673.047) -- 0:16:55
38000 -- (-1679.510) (-1686.185) [-1666.374] (-1676.846) * (-1673.522) (-1678.204) (-1681.465) [-1661.945] -- 0:16:52
39000 -- [-1667.832] (-1681.764) (-1666.565) (-1682.949) * (-1684.957) (-1677.009) [-1687.763] (-1684.604) -- 0:16:50
40000 -- [-1668.433] (-1667.088) (-1685.160) (-1677.696) * (-1675.539) (-1682.734) [-1671.808] (-1691.005) -- 0:16:47
Average standard deviation of split frequencies: 0.038808
41000 -- (-1676.462) (-1677.376) [-1670.763] (-1693.932) * [-1673.010] (-1680.560) (-1687.334) (-1679.666) -- 0:16:45
42000 -- (-1682.878) (-1670.392) (-1669.403) [-1669.314] * (-1693.539) [-1671.824] (-1684.542) (-1678.574) -- 0:16:43
43000 -- (-1683.978) [-1672.259] (-1685.377) (-1686.184) * (-1681.687) (-1674.118) [-1668.448] (-1693.608) -- 0:16:41
44000 -- (-1675.161) (-1678.100) (-1673.954) [-1671.025] * (-1666.319) (-1683.323) [-1672.054] (-1683.085) -- 0:16:39
45000 -- (-1674.950) (-1691.551) (-1672.836) [-1667.116] * (-1670.131) (-1689.235) (-1672.429) [-1677.322] -- 0:16:37
Average standard deviation of split frequencies: 0.038273
46000 -- (-1669.652) (-1670.935) (-1683.198) [-1671.411] * (-1693.624) [-1682.005] (-1670.728) (-1682.965) -- 0:16:35
47000 -- (-1671.699) (-1671.844) (-1682.526) [-1668.576] * (-1694.107) (-1680.738) [-1683.024] (-1677.760) -- 0:16:33
48000 -- (-1677.691) [-1679.993] (-1685.856) (-1669.612) * (-1692.406) (-1682.187) (-1677.984) [-1665.439] -- 0:16:31
49000 -- [-1671.656] (-1677.169) (-1682.704) (-1682.460) * (-1684.231) (-1685.231) (-1681.744) [-1672.221] -- 0:16:29
50000 -- [-1664.146] (-1694.945) (-1682.297) (-1679.381) * [-1676.469] (-1678.787) (-1697.325) (-1664.735) -- 0:16:27
Average standard deviation of split frequencies: 0.040857
51000 -- [-1664.992] (-1673.222) (-1690.552) (-1685.617) * [-1674.065] (-1690.549) (-1677.427) (-1668.432) -- 0:16:26
52000 -- (-1683.449) (-1674.679) [-1666.194] (-1678.714) * [-1674.795] (-1697.683) (-1663.815) (-1668.392) -- 0:16:24
53000 -- (-1695.875) (-1668.259) [-1665.876] (-1672.346) * (-1687.958) (-1678.347) [-1665.048] (-1685.617) -- 0:16:22
54000 -- (-1699.154) (-1672.904) (-1678.358) [-1664.079] * (-1673.839) (-1689.550) (-1669.800) [-1687.665] -- 0:16:21
55000 -- (-1677.615) [-1668.719] (-1678.970) (-1683.238) * [-1673.385] (-1677.532) (-1680.882) (-1667.814) -- 0:16:19
Average standard deviation of split frequencies: 0.037881
56000 -- (-1672.902) (-1688.664) (-1691.119) [-1679.958] * [-1669.742] (-1684.512) (-1670.501) (-1678.064) -- 0:16:17
57000 -- (-1668.304) (-1677.665) [-1664.221] (-1673.048) * (-1677.412) [-1675.470] (-1684.043) (-1688.383) -- 0:16:16
58000 -- (-1676.716) (-1687.515) (-1700.884) [-1667.023] * (-1674.217) [-1682.132] (-1673.369) (-1684.141) -- 0:16:14
59000 -- (-1676.640) (-1675.426) (-1686.084) [-1675.574] * (-1683.181) [-1665.714] (-1684.693) (-1680.118) -- 0:16:12
60000 -- (-1671.811) [-1673.104] (-1678.084) (-1685.961) * (-1677.274) [-1665.877] (-1674.704) (-1678.321) -- 0:16:11
Average standard deviation of split frequencies: 0.039989
61000 -- [-1671.635] (-1677.470) (-1678.173) (-1687.352) * (-1685.214) [-1682.792] (-1670.009) (-1680.834) -- 0:16:09
62000 -- [-1671.817] (-1678.066) (-1675.824) (-1681.234) * [-1673.368] (-1701.468) (-1668.425) (-1675.543) -- 0:16:08
63000 -- (-1676.602) [-1668.993] (-1677.982) (-1697.838) * (-1677.199) [-1659.857] (-1694.728) (-1679.609) -- 0:16:06
64000 -- (-1685.908) (-1679.443) (-1673.193) [-1674.502] * [-1678.088] (-1668.200) (-1692.727) (-1686.269) -- 0:16:05
65000 -- (-1682.903) (-1675.821) (-1674.050) [-1671.769] * (-1681.864) (-1700.242) (-1674.399) [-1669.601] -- 0:16:03
Average standard deviation of split frequencies: 0.038144
66000 -- (-1675.186) [-1674.548] (-1685.964) (-1670.209) * [-1665.936] (-1682.970) (-1686.390) (-1674.609) -- 0:16:02
67000 -- (-1678.106) (-1680.372) [-1668.540] (-1688.157) * [-1673.781] (-1683.255) (-1703.750) (-1672.722) -- 0:16:00
68000 -- [-1670.061] (-1691.796) (-1669.243) (-1679.647) * (-1676.035) (-1675.781) (-1690.911) [-1671.055] -- 0:15:59
69000 -- (-1683.144) (-1679.970) [-1672.924] (-1670.982) * (-1691.342) (-1685.989) (-1689.255) [-1664.995] -- 0:15:57
70000 -- (-1682.140) [-1663.952] (-1692.066) (-1686.410) * (-1671.593) (-1676.705) [-1664.014] (-1676.181) -- 0:15:56
Average standard deviation of split frequencies: 0.036615
71000 -- [-1671.035] (-1667.236) (-1683.219) (-1681.864) * (-1678.592) [-1690.813] (-1669.690) (-1684.667) -- 0:16:08
72000 -- (-1682.434) [-1666.421] (-1675.851) (-1683.509) * [-1668.614] (-1686.819) (-1679.188) (-1681.787) -- 0:16:06
73000 -- (-1675.671) (-1694.744) [-1673.353] (-1693.498) * (-1685.117) (-1689.682) (-1673.884) [-1675.153] -- 0:16:05
74000 -- (-1691.565) [-1678.287] (-1680.673) (-1679.933) * (-1678.500) [-1666.843] (-1683.664) (-1677.932) -- 0:16:03
75000 -- (-1671.883) (-1677.613) [-1680.855] (-1682.861) * (-1683.514) (-1675.053) (-1681.500) [-1673.563] -- 0:16:01
Average standard deviation of split frequencies: 0.034250
76000 -- (-1672.326) [-1666.548] (-1676.521) (-1694.245) * (-1686.821) [-1675.114] (-1679.532) (-1669.616) -- 0:16:00
77000 -- (-1678.516) [-1668.082] (-1690.681) (-1678.852) * (-1685.298) (-1672.813) [-1671.180] (-1673.927) -- 0:15:58
78000 -- (-1669.410) (-1665.587) (-1675.500) [-1672.159] * (-1680.083) (-1678.186) (-1682.530) [-1669.358] -- 0:15:57
79000 -- (-1678.252) (-1675.987) (-1680.095) [-1671.603] * (-1664.849) (-1678.551) (-1676.645) [-1667.921] -- 0:15:55
80000 -- (-1671.236) (-1682.004) (-1670.259) [-1668.811] * (-1673.720) (-1678.558) [-1678.005] (-1673.525) -- 0:15:54
Average standard deviation of split frequencies: 0.034001
81000 -- (-1675.026) (-1690.266) [-1670.951] (-1667.480) * (-1681.762) (-1678.367) (-1666.031) [-1673.764] -- 0:15:53
82000 -- (-1667.265) (-1671.752) [-1664.998] (-1676.297) * (-1680.087) (-1682.931) (-1669.024) [-1678.368] -- 0:15:51
83000 -- [-1688.756] (-1695.252) (-1691.446) (-1680.313) * (-1683.704) (-1679.554) (-1690.288) [-1671.001] -- 0:15:50
84000 -- (-1697.962) [-1664.628] (-1694.102) (-1675.299) * [-1672.901] (-1674.498) (-1677.529) (-1680.580) -- 0:15:48
85000 -- (-1673.489) (-1676.130) (-1676.490) [-1670.139] * (-1689.188) (-1685.797) (-1674.971) [-1679.439] -- 0:15:47
Average standard deviation of split frequencies: 0.034145
86000 -- (-1681.208) (-1673.802) [-1673.739] (-1677.272) * (-1669.061) (-1683.363) [-1664.944] (-1682.133) -- 0:15:45
87000 -- (-1682.215) [-1671.115] (-1683.934) (-1689.793) * (-1669.447) (-1675.749) [-1670.773] (-1679.287) -- 0:15:44
88000 -- (-1682.784) (-1671.988) [-1669.185] (-1681.438) * [-1685.567] (-1680.244) (-1686.158) (-1674.560) -- 0:15:43
89000 -- (-1674.957) (-1678.515) [-1682.623] (-1691.912) * [-1676.862] (-1684.905) (-1673.426) (-1679.251) -- 0:15:41
90000 -- (-1672.359) (-1687.688) (-1671.714) [-1680.609] * (-1680.376) [-1671.388] (-1676.283) (-1677.429) -- 0:15:40
Average standard deviation of split frequencies: 0.037059
91000 -- (-1671.156) (-1686.177) [-1669.053] (-1673.761) * (-1676.457) (-1690.295) (-1666.059) [-1667.740] -- 0:15:38
92000 -- (-1691.189) (-1678.702) (-1690.363) [-1665.737] * [-1672.145] (-1685.323) (-1678.977) (-1693.768) -- 0:15:37
93000 -- (-1691.302) (-1676.861) [-1682.950] (-1669.793) * [-1669.951] (-1679.566) (-1681.282) (-1689.677) -- 0:15:36
94000 -- (-1679.205) (-1676.660) (-1697.702) [-1680.386] * (-1678.536) (-1682.640) (-1687.715) [-1675.351] -- 0:15:34
95000 -- [-1686.989] (-1670.040) (-1680.251) (-1680.551) * [-1665.535] (-1667.580) (-1662.030) (-1676.711) -- 0:15:33
Average standard deviation of split frequencies: 0.032284
96000 -- (-1675.894) (-1672.563) (-1670.005) [-1685.752] * (-1675.492) (-1671.242) (-1685.354) [-1672.601] -- 0:15:32
97000 -- (-1687.293) (-1681.804) [-1658.145] (-1672.094) * (-1685.695) [-1681.011] (-1682.018) (-1682.031) -- 0:15:30
98000 -- (-1686.057) [-1672.775] (-1687.624) (-1674.977) * (-1688.582) (-1692.987) [-1672.649] (-1697.021) -- 0:15:29
99000 -- (-1691.376) (-1670.631) (-1683.606) [-1673.415] * (-1691.448) [-1675.622] (-1673.573) (-1687.327) -- 0:15:28
100000 -- (-1672.314) [-1666.941] (-1689.431) (-1673.782) * (-1686.476) (-1677.138) [-1674.541] (-1698.324) -- 0:15:27
Average standard deviation of split frequencies: 0.033463
101000 -- (-1683.022) (-1682.867) [-1667.686] (-1665.194) * [-1671.267] (-1689.111) (-1670.716) (-1685.386) -- 0:15:25
102000 -- (-1680.425) (-1669.057) (-1683.658) [-1658.611] * (-1675.805) (-1685.365) [-1672.572] (-1667.081) -- 0:15:24
103000 -- (-1699.718) (-1673.355) [-1671.843] (-1675.948) * (-1697.933) (-1691.955) [-1680.854] (-1683.518) -- 0:15:23
104000 -- [-1668.723] (-1675.930) (-1681.210) (-1687.686) * (-1679.525) [-1667.211] (-1689.732) (-1686.476) -- 0:15:21
105000 -- (-1679.903) [-1675.494] (-1686.505) (-1673.956) * (-1664.022) [-1675.194] (-1677.822) (-1676.846) -- 0:15:20
Average standard deviation of split frequencies: 0.033632
106000 -- (-1681.654) (-1671.557) [-1678.680] (-1683.999) * (-1675.945) (-1694.159) (-1695.172) [-1665.043] -- 0:15:19
107000 -- (-1673.941) [-1663.526] (-1690.518) (-1670.146) * [-1674.713] (-1677.421) (-1688.189) (-1678.672) -- 0:15:18
108000 -- (-1680.649) [-1673.300] (-1679.288) (-1678.671) * (-1686.832) (-1681.858) [-1666.986] (-1686.759) -- 0:15:16
109000 -- (-1692.485) (-1677.964) (-1675.321) [-1684.560] * (-1672.954) (-1668.241) [-1672.933] (-1675.037) -- 0:15:15
110000 -- [-1671.942] (-1680.599) (-1674.473) (-1691.246) * (-1676.480) [-1674.659] (-1679.228) (-1666.379) -- 0:15:14
Average standard deviation of split frequencies: 0.033034
111000 -- (-1673.887) (-1686.904) [-1664.513] (-1682.669) * (-1681.574) (-1678.951) [-1679.671] (-1664.142) -- 0:15:13
112000 -- (-1694.255) (-1684.449) [-1668.695] (-1679.660) * (-1669.628) [-1676.005] (-1698.078) (-1675.475) -- 0:15:11
113000 -- (-1661.031) (-1688.179) [-1675.241] (-1676.237) * (-1678.466) (-1680.279) [-1676.239] (-1690.859) -- 0:15:18
114000 -- [-1677.563] (-1678.764) (-1686.936) (-1668.689) * [-1668.875] (-1688.786) (-1673.574) (-1674.601) -- 0:15:17
115000 -- (-1682.226) [-1681.494] (-1674.286) (-1685.788) * [-1667.718] (-1693.898) (-1667.696) (-1691.711) -- 0:15:15
Average standard deviation of split frequencies: 0.033008
116000 -- [-1671.933] (-1669.983) (-1675.293) (-1687.270) * [-1671.818] (-1688.700) (-1687.236) (-1670.798) -- 0:15:14
117000 -- [-1667.422] (-1690.511) (-1685.434) (-1692.406) * (-1676.584) (-1667.374) (-1693.726) [-1670.152] -- 0:15:13
118000 -- (-1679.424) [-1668.136] (-1683.370) (-1694.380) * [-1676.836] (-1666.498) (-1682.746) (-1687.202) -- 0:15:11
119000 -- (-1670.937) (-1675.168) [-1671.898] (-1681.029) * (-1681.078) (-1673.313) (-1680.557) [-1674.979] -- 0:15:10
120000 -- (-1670.911) (-1686.237) (-1679.504) [-1681.870] * (-1680.863) [-1670.941] (-1683.222) (-1678.896) -- 0:15:09
Average standard deviation of split frequencies: 0.033167
121000 -- (-1694.103) (-1677.469) (-1672.400) [-1675.681] * (-1680.751) (-1686.718) [-1668.500] (-1678.449) -- 0:15:08
122000 -- (-1679.372) [-1674.813] (-1688.756) (-1670.313) * (-1677.378) (-1681.302) [-1683.338] (-1684.309) -- 0:15:06
123000 -- (-1680.077) [-1668.249] (-1690.136) (-1668.913) * (-1682.029) [-1678.433] (-1673.864) (-1697.856) -- 0:15:05
124000 -- (-1677.088) (-1689.512) [-1683.060] (-1676.005) * (-1673.971) [-1687.379] (-1678.555) (-1678.157) -- 0:15:04
125000 -- [-1680.491] (-1664.541) (-1679.486) (-1678.782) * (-1669.279) (-1678.262) [-1680.305] (-1677.850) -- 0:15:02
Average standard deviation of split frequencies: 0.032498
126000 -- (-1682.659) (-1681.008) (-1681.849) [-1678.024] * (-1674.788) (-1675.496) [-1670.817] (-1683.465) -- 0:15:01
127000 -- [-1669.703] (-1672.387) (-1679.788) (-1683.482) * (-1669.128) (-1673.949) [-1674.956] (-1676.726) -- 0:15:00
128000 -- [-1670.604] (-1677.959) (-1686.641) (-1692.343) * (-1688.077) (-1679.862) (-1668.797) [-1666.747] -- 0:14:59
129000 -- [-1670.339] (-1683.486) (-1669.426) (-1683.230) * (-1683.372) (-1670.014) (-1703.672) [-1664.469] -- 0:14:58
130000 -- (-1680.941) [-1666.928] (-1675.709) (-1681.219) * (-1689.046) (-1673.953) (-1688.626) [-1666.999] -- 0:14:56
Average standard deviation of split frequencies: 0.031675
131000 -- (-1685.788) (-1683.784) (-1684.953) [-1662.657] * [-1679.787] (-1679.684) (-1680.701) (-1667.001) -- 0:14:55
132000 -- [-1674.902] (-1673.510) (-1703.154) (-1684.180) * (-1680.954) (-1682.260) [-1667.322] (-1668.223) -- 0:14:54
133000 -- (-1678.507) (-1678.662) [-1664.076] (-1683.676) * (-1668.764) (-1688.796) (-1679.329) [-1670.883] -- 0:14:53
134000 -- [-1685.468] (-1673.968) (-1682.668) (-1694.197) * [-1674.050] (-1681.492) (-1680.720) (-1679.738) -- 0:14:51
135000 -- (-1692.433) (-1670.675) (-1682.443) [-1673.532] * [-1663.314] (-1686.449) (-1686.476) (-1687.017) -- 0:14:50
Average standard deviation of split frequencies: 0.031543
136000 -- (-1681.105) (-1676.407) (-1686.343) [-1675.459] * (-1688.351) [-1671.902] (-1672.277) (-1678.359) -- 0:14:49
137000 -- (-1682.554) [-1663.063] (-1683.291) (-1671.798) * (-1687.236) (-1682.119) [-1676.057] (-1672.701) -- 0:14:54
138000 -- (-1679.283) (-1668.640) [-1674.471] (-1682.475) * (-1684.504) (-1673.097) (-1688.779) [-1689.684] -- 0:14:53
139000 -- (-1681.965) (-1682.035) [-1679.798] (-1681.117) * (-1682.374) (-1682.687) (-1687.684) [-1667.245] -- 0:14:51
140000 -- (-1681.789) (-1686.430) [-1669.179] (-1678.923) * (-1676.719) (-1691.237) (-1678.998) [-1666.796] -- 0:14:50
Average standard deviation of split frequencies: 0.029614
141000 -- (-1678.826) [-1672.014] (-1670.229) (-1674.564) * (-1682.840) [-1682.424] (-1682.403) (-1676.089) -- 0:14:49
142000 -- [-1674.209] (-1687.440) (-1684.540) (-1672.440) * [-1673.157] (-1673.293) (-1678.024) (-1671.753) -- 0:14:48
143000 -- [-1681.615] (-1677.162) (-1683.205) (-1685.348) * (-1677.295) [-1672.143] (-1683.845) (-1681.626) -- 0:14:46
144000 -- (-1686.745) (-1675.885) (-1681.107) [-1669.479] * (-1685.967) [-1670.856] (-1680.783) (-1671.561) -- 0:14:45
145000 -- (-1690.657) (-1682.764) (-1689.466) [-1667.917] * (-1690.644) [-1662.976] (-1680.648) (-1669.890) -- 0:14:44
Average standard deviation of split frequencies: 0.029059
146000 -- (-1673.431) [-1670.554] (-1673.700) (-1679.788) * (-1683.865) (-1699.708) [-1671.478] (-1668.281) -- 0:14:43
147000 -- [-1686.458] (-1682.110) (-1689.263) (-1675.735) * [-1670.278] (-1686.686) (-1680.898) (-1681.092) -- 0:14:42
148000 -- [-1669.467] (-1669.583) (-1688.393) (-1685.941) * (-1685.268) (-1683.722) (-1691.330) [-1661.942] -- 0:14:40
149000 -- (-1675.828) [-1675.456] (-1668.502) (-1684.519) * (-1671.690) (-1679.167) (-1684.956) [-1676.587] -- 0:14:39
150000 -- (-1687.590) (-1682.228) [-1667.813] (-1683.673) * (-1674.753) (-1687.288) [-1678.862] (-1681.800) -- 0:14:38
Average standard deviation of split frequencies: 0.028535
151000 -- (-1677.192) [-1675.601] (-1668.409) (-1683.674) * (-1695.099) (-1680.399) [-1671.646] (-1670.123) -- 0:14:37
152000 -- (-1686.656) (-1681.964) (-1679.006) [-1677.014] * (-1680.896) (-1682.412) (-1682.563) [-1676.741] -- 0:14:35
153000 -- (-1675.014) (-1671.310) [-1678.150] (-1674.551) * [-1675.263] (-1677.325) (-1676.846) (-1677.524) -- 0:14:34
154000 -- (-1680.508) [-1671.115] (-1682.599) (-1683.265) * (-1683.352) (-1688.721) (-1686.466) [-1670.264] -- 0:14:33
155000 -- (-1679.533) (-1678.689) [-1673.613] (-1670.315) * [-1674.729] (-1689.152) (-1675.038) (-1693.760) -- 0:14:32
Average standard deviation of split frequencies: 0.027813
156000 -- [-1673.904] (-1675.238) (-1676.933) (-1674.788) * (-1685.056) (-1683.304) [-1675.649] (-1690.821) -- 0:14:31
157000 -- (-1688.776) (-1679.973) (-1686.005) [-1667.404] * [-1680.912] (-1683.408) (-1691.932) (-1680.708) -- 0:14:29
158000 -- [-1670.266] (-1671.472) (-1691.851) (-1681.770) * [-1673.924] (-1681.578) (-1684.436) (-1678.113) -- 0:14:28
159000 -- (-1671.882) [-1672.271] (-1677.189) (-1683.067) * (-1670.919) (-1678.156) (-1678.975) [-1667.094] -- 0:14:27
160000 -- (-1670.957) (-1685.617) (-1682.198) [-1677.914] * [-1673.510] (-1686.099) (-1690.976) (-1675.558) -- 0:14:26
Average standard deviation of split frequencies: 0.026646
161000 -- [-1668.595] (-1671.876) (-1689.729) (-1686.807) * [-1665.899] (-1675.306) (-1681.527) (-1699.967) -- 0:14:25
162000 -- [-1670.917] (-1686.886) (-1677.001) (-1682.369) * [-1681.755] (-1682.309) (-1682.570) (-1682.638) -- 0:14:23
163000 -- [-1679.706] (-1684.563) (-1683.664) (-1680.336) * (-1675.553) [-1664.956] (-1687.445) (-1700.765) -- 0:14:22
164000 -- [-1675.025] (-1681.679) (-1675.263) (-1669.244) * [-1670.960] (-1678.440) (-1682.404) (-1686.947) -- 0:14:26
165000 -- [-1663.281] (-1692.768) (-1671.360) (-1671.759) * (-1674.951) (-1676.829) (-1674.276) [-1670.281] -- 0:14:25
Average standard deviation of split frequencies: 0.025036
166000 -- (-1680.525) (-1690.933) [-1674.150] (-1691.032) * (-1673.495) [-1667.595] (-1677.444) (-1672.168) -- 0:14:24
167000 -- (-1684.526) [-1670.848] (-1682.588) (-1678.021) * (-1677.645) (-1668.556) (-1684.494) [-1676.494] -- 0:14:22
168000 -- (-1687.214) [-1668.508] (-1675.714) (-1674.051) * (-1684.825) [-1672.758] (-1675.958) (-1676.205) -- 0:14:21
169000 -- (-1676.394) [-1669.525] (-1692.241) (-1671.902) * (-1675.286) [-1683.945] (-1677.778) (-1678.434) -- 0:14:20
170000 -- (-1696.088) [-1675.587] (-1679.490) (-1679.554) * (-1685.864) (-1668.341) (-1672.445) [-1668.161] -- 0:14:19
Average standard deviation of split frequencies: 0.025592
171000 -- (-1676.357) (-1671.399) [-1685.391] (-1684.345) * (-1677.138) (-1677.752) (-1683.388) [-1677.036] -- 0:14:18
172000 -- (-1688.168) (-1680.268) (-1673.497) [-1672.064] * (-1668.754) (-1680.613) [-1674.115] (-1689.009) -- 0:14:16
173000 -- (-1686.683) (-1682.520) (-1674.228) [-1678.907] * [-1667.606] (-1675.877) (-1716.350) (-1670.924) -- 0:14:15
174000 -- (-1673.594) (-1671.426) [-1681.955] (-1673.383) * (-1689.747) [-1668.260] (-1677.132) (-1678.370) -- 0:14:14
175000 -- (-1692.234) [-1676.944] (-1687.326) (-1680.686) * (-1680.901) [-1672.535] (-1683.351) (-1680.905) -- 0:14:13
Average standard deviation of split frequencies: 0.023177
176000 -- (-1667.302) [-1669.705] (-1672.817) (-1685.817) * (-1677.958) (-1674.584) (-1679.969) [-1670.070] -- 0:14:12
177000 -- (-1679.587) (-1664.532) (-1683.986) [-1668.822] * [-1668.252] (-1662.953) (-1709.893) (-1685.540) -- 0:14:10
178000 -- (-1683.510) [-1673.810] (-1684.029) (-1671.387) * [-1667.652] (-1673.697) (-1694.707) (-1688.900) -- 0:14:09
179000 -- (-1691.593) [-1664.600] (-1684.608) (-1673.802) * (-1675.144) [-1669.426] (-1671.031) (-1670.155) -- 0:14:08
180000 -- (-1673.099) (-1680.365) (-1679.576) [-1672.395] * (-1675.042) (-1679.626) [-1675.844] (-1687.442) -- 0:14:07
Average standard deviation of split frequencies: 0.021087
181000 -- (-1686.956) (-1676.664) (-1673.585) [-1677.491] * (-1679.275) (-1686.028) (-1671.362) [-1676.489] -- 0:14:06
182000 -- (-1688.486) [-1681.613] (-1673.254) (-1674.760) * [-1677.714] (-1686.564) (-1674.731) (-1693.972) -- 0:14:04
183000 -- (-1683.437) (-1672.630) (-1686.671) [-1676.599] * (-1673.347) (-1685.315) [-1680.813] (-1686.773) -- 0:14:03
184000 -- (-1674.474) (-1682.747) (-1675.195) [-1672.117] * (-1687.827) (-1696.303) (-1671.394) [-1674.636] -- 0:14:02
185000 -- (-1679.192) [-1677.503] (-1686.229) (-1681.520) * (-1671.400) (-1680.400) [-1677.624] (-1675.602) -- 0:14:01
Average standard deviation of split frequencies: 0.019110
186000 -- (-1684.169) (-1664.371) (-1676.653) [-1683.036] * (-1672.924) [-1670.137] (-1691.186) (-1691.365) -- 0:14:00
187000 -- (-1691.929) (-1683.916) [-1673.196] (-1688.689) * [-1675.954] (-1697.574) (-1688.193) (-1692.949) -- 0:13:59
188000 -- (-1674.593) (-1686.789) [-1670.995] (-1686.982) * (-1673.517) [-1677.595] (-1671.631) (-1676.136) -- 0:13:57
189000 -- (-1677.798) [-1663.123] (-1700.669) (-1683.997) * (-1681.573) (-1681.551) (-1686.957) [-1667.160] -- 0:13:56
190000 -- [-1670.416] (-1683.790) (-1687.451) (-1683.063) * (-1680.085) (-1675.135) [-1670.853] (-1673.914) -- 0:13:55
Average standard deviation of split frequencies: 0.019087
191000 -- (-1675.470) (-1675.330) (-1686.781) [-1675.638] * [-1678.078] (-1674.720) (-1668.587) (-1678.909) -- 0:13:54
192000 -- (-1677.553) (-1701.079) [-1666.639] (-1705.368) * (-1671.796) (-1688.717) (-1676.611) [-1681.709] -- 0:13:57
193000 -- (-1674.225) (-1681.304) [-1683.025] (-1679.232) * (-1680.221) (-1674.056) [-1683.152] (-1686.118) -- 0:13:56
194000 -- (-1672.634) (-1679.982) [-1678.572] (-1666.957) * [-1666.407] (-1685.968) (-1673.330) (-1680.955) -- 0:13:55
195000 -- (-1677.928) [-1671.226] (-1673.246) (-1674.523) * (-1684.820) [-1671.505] (-1686.951) (-1673.654) -- 0:13:53
Average standard deviation of split frequencies: 0.018279
196000 -- [-1679.347] (-1685.877) (-1667.027) (-1672.557) * (-1678.181) [-1675.934] (-1694.134) (-1684.431) -- 0:13:52
197000 -- (-1685.103) (-1691.334) (-1675.918) [-1667.298] * [-1685.280] (-1679.318) (-1689.756) (-1679.074) -- 0:13:51
198000 -- (-1685.293) (-1690.183) (-1681.859) [-1673.102] * (-1677.223) (-1693.437) [-1670.048] (-1686.057) -- 0:13:50
199000 -- (-1681.523) (-1683.928) (-1673.999) [-1672.802] * (-1685.693) (-1684.736) [-1660.555] (-1688.521) -- 0:13:49
200000 -- [-1670.583] (-1681.507) (-1673.657) (-1677.186) * (-1680.746) (-1677.235) [-1670.300] (-1675.633) -- 0:13:47
Average standard deviation of split frequencies: 0.018794
201000 -- [-1672.120] (-1678.727) (-1681.654) (-1673.258) * (-1679.052) (-1679.632) (-1686.331) [-1682.862] -- 0:13:46
202000 -- (-1690.663) (-1695.538) (-1678.490) [-1675.060] * [-1660.867] (-1671.569) (-1684.258) (-1686.482) -- 0:13:45
203000 -- (-1696.463) [-1670.881] (-1673.143) (-1672.128) * [-1669.839] (-1674.194) (-1674.275) (-1683.969) -- 0:13:44
204000 -- (-1672.071) (-1685.882) [-1674.450] (-1685.293) * (-1681.928) (-1671.477) (-1675.247) [-1676.779] -- 0:13:43
205000 -- (-1681.847) (-1693.540) (-1674.233) [-1672.991] * (-1679.066) [-1662.337] (-1677.375) (-1695.071) -- 0:13:46
Average standard deviation of split frequencies: 0.020281
206000 -- [-1675.144] (-1687.010) (-1685.204) (-1685.334) * [-1669.755] (-1689.685) (-1671.889) (-1684.467) -- 0:13:44
207000 -- (-1672.556) (-1687.393) [-1662.905] (-1686.618) * (-1670.474) (-1672.127) [-1676.902] (-1692.085) -- 0:13:43
208000 -- [-1682.727] (-1680.454) (-1679.270) (-1668.032) * (-1678.050) (-1675.523) [-1670.188] (-1689.648) -- 0:13:42
209000 -- (-1678.136) (-1680.229) (-1674.605) [-1679.384] * (-1671.680) (-1678.794) [-1677.426] (-1684.601) -- 0:13:41
210000 -- (-1672.047) (-1683.845) (-1667.448) [-1665.938] * (-1666.553) (-1684.757) (-1678.673) [-1670.229] -- 0:13:40
Average standard deviation of split frequencies: 0.019728
211000 -- (-1681.466) [-1675.521] (-1686.076) (-1672.686) * [-1665.839] (-1688.037) (-1684.222) (-1675.224) -- 0:13:38
212000 -- (-1689.282) [-1674.160] (-1674.168) (-1677.759) * [-1662.733] (-1675.582) (-1681.425) (-1675.218) -- 0:13:37
213000 -- (-1683.261) (-1694.168) (-1670.336) [-1672.112] * (-1676.435) (-1660.912) (-1683.062) [-1672.246] -- 0:13:36
214000 -- [-1676.174] (-1681.024) (-1682.751) (-1674.966) * (-1672.716) (-1680.640) [-1671.409] (-1674.931) -- 0:13:35
215000 -- (-1682.965) [-1687.466] (-1670.626) (-1692.136) * (-1676.087) (-1680.385) (-1671.685) [-1663.327] -- 0:13:34
Average standard deviation of split frequencies: 0.018158
216000 -- (-1677.165) [-1669.090] (-1669.439) (-1701.714) * (-1672.360) (-1684.490) [-1663.538] (-1682.256) -- 0:13:33
217000 -- (-1681.089) (-1681.334) (-1676.810) [-1668.957] * (-1679.416) (-1677.615) [-1666.394] (-1684.078) -- 0:13:31
218000 -- [-1672.607] (-1681.515) (-1666.971) (-1672.650) * (-1679.906) (-1682.300) (-1681.741) [-1670.656] -- 0:13:30
219000 -- (-1685.204) (-1678.707) (-1676.429) [-1664.034] * (-1673.574) (-1690.391) (-1664.400) [-1669.579] -- 0:13:29
220000 -- (-1678.577) [-1669.828] (-1673.115) (-1664.045) * (-1680.945) (-1682.751) (-1689.099) [-1671.884] -- 0:13:28
Average standard deviation of split frequencies: 0.018660
221000 -- (-1675.835) (-1682.822) [-1667.257] (-1682.123) * [-1671.146] (-1670.369) (-1677.084) (-1691.771) -- 0:13:27
222000 -- (-1671.765) [-1683.310] (-1682.650) (-1670.436) * [-1674.620] (-1674.436) (-1682.153) (-1688.218) -- 0:13:26
223000 -- (-1679.304) (-1686.645) (-1678.794) [-1679.247] * [-1670.373] (-1679.970) (-1678.702) (-1674.384) -- 0:13:24
224000 -- (-1684.773) (-1695.176) (-1683.676) [-1671.863] * (-1683.842) (-1685.199) [-1670.133] (-1673.264) -- 0:13:23
225000 -- (-1684.900) (-1688.393) (-1692.434) [-1674.248] * (-1684.757) (-1676.233) (-1680.375) [-1680.639] -- 0:13:22
Average standard deviation of split frequencies: 0.016887
226000 -- [-1680.644] (-1680.507) (-1677.405) (-1679.284) * (-1677.255) (-1689.097) (-1697.260) [-1670.458] -- 0:13:24
227000 -- [-1678.128] (-1694.963) (-1677.979) (-1676.390) * (-1675.091) (-1671.423) [-1686.603] (-1696.065) -- 0:13:23
228000 -- [-1673.265] (-1685.417) (-1691.650) (-1677.834) * (-1671.423) (-1678.026) [-1671.646] (-1680.474) -- 0:13:22
229000 -- [-1663.630] (-1675.654) (-1687.280) (-1668.837) * (-1670.061) (-1667.498) [-1677.180] (-1672.146) -- 0:13:21
230000 -- [-1665.377] (-1675.634) (-1686.289) (-1696.337) * [-1682.129] (-1679.823) (-1675.362) (-1674.860) -- 0:13:20
Average standard deviation of split frequencies: 0.015406
231000 -- (-1667.880) (-1686.152) [-1676.361] (-1683.418) * (-1681.886) (-1681.284) [-1670.339] (-1678.253) -- 0:13:18
232000 -- [-1670.329] (-1675.808) (-1678.745) (-1683.570) * [-1677.516] (-1676.345) (-1677.333) (-1681.922) -- 0:13:17
233000 -- (-1673.449) (-1674.165) [-1667.839] (-1698.554) * (-1667.906) [-1676.734] (-1674.239) (-1673.708) -- 0:13:16
234000 -- (-1689.974) (-1679.635) [-1677.041] (-1676.133) * (-1672.255) (-1686.858) [-1680.852] (-1673.234) -- 0:13:15
235000 -- [-1676.260] (-1676.447) (-1678.054) (-1681.360) * [-1665.628] (-1677.270) (-1679.886) (-1672.480) -- 0:13:17
Average standard deviation of split frequencies: 0.015706
236000 -- (-1689.164) (-1694.747) [-1676.428] (-1674.889) * [-1674.720] (-1674.238) (-1671.123) (-1688.285) -- 0:13:16
237000 -- (-1688.750) [-1674.119] (-1673.966) (-1680.708) * [-1677.199] (-1680.175) (-1695.185) (-1683.038) -- 0:13:15
238000 -- (-1678.801) [-1672.672] (-1683.933) (-1674.369) * (-1676.239) [-1664.428] (-1682.037) (-1693.083) -- 0:13:14
239000 -- (-1681.274) (-1671.707) [-1676.301] (-1679.501) * (-1676.379) [-1675.043] (-1676.683) (-1674.528) -- 0:13:12
240000 -- (-1678.046) (-1667.199) [-1681.148] (-1701.203) * (-1688.419) (-1678.875) [-1676.932] (-1674.036) -- 0:13:11
Average standard deviation of split frequencies: 0.014299
241000 -- (-1676.830) (-1675.184) (-1682.725) [-1674.524] * (-1673.642) (-1667.467) [-1676.748] (-1683.982) -- 0:13:10
242000 -- (-1664.840) [-1666.345] (-1690.535) (-1678.259) * [-1666.585] (-1673.531) (-1684.567) (-1682.535) -- 0:13:09
243000 -- [-1669.897] (-1682.992) (-1673.769) (-1678.233) * (-1681.238) (-1686.598) [-1677.692] (-1680.292) -- 0:13:08
244000 -- (-1686.607) (-1671.153) [-1672.412] (-1675.251) * (-1679.033) (-1688.621) (-1672.492) [-1673.097] -- 0:13:06
245000 -- (-1682.074) (-1686.691) [-1681.897] (-1671.885) * (-1678.529) (-1679.967) (-1688.483) [-1663.572] -- 0:13:05
Average standard deviation of split frequencies: 0.012647
246000 -- (-1679.426) (-1674.590) (-1682.781) [-1668.382] * [-1666.423] (-1671.706) (-1682.299) (-1668.725) -- 0:13:04
247000 -- (-1674.985) (-1686.613) (-1673.403) [-1673.233] * (-1687.911) [-1671.560] (-1685.738) (-1679.221) -- 0:13:03
248000 -- [-1674.701] (-1674.385) (-1687.007) (-1681.794) * (-1672.095) [-1674.692] (-1690.999) (-1684.562) -- 0:13:05
249000 -- (-1682.773) (-1671.109) (-1678.047) [-1674.313] * (-1685.936) [-1673.416] (-1683.704) (-1672.778) -- 0:13:04
250000 -- (-1690.820) (-1684.941) (-1685.304) [-1668.343] * [-1680.656] (-1678.216) (-1678.279) (-1683.015) -- 0:13:03
Average standard deviation of split frequencies: 0.013616
251000 -- (-1679.413) (-1676.480) [-1666.732] (-1685.154) * (-1675.242) [-1663.828] (-1676.290) (-1679.072) -- 0:13:01
252000 -- (-1671.238) [-1668.229] (-1686.733) (-1672.542) * (-1679.922) (-1674.318) [-1672.259] (-1677.290) -- 0:13:00
253000 -- [-1669.526] (-1677.716) (-1685.163) (-1671.548) * (-1693.500) (-1672.244) (-1680.684) [-1672.601] -- 0:12:59
254000 -- (-1680.375) (-1671.108) [-1665.495] (-1694.460) * (-1681.207) [-1679.093] (-1684.398) (-1677.069) -- 0:12:58
255000 -- [-1674.362] (-1675.473) (-1669.064) (-1680.233) * [-1689.306] (-1681.756) (-1680.524) (-1682.646) -- 0:12:57
Average standard deviation of split frequencies: 0.013627
256000 -- (-1686.534) [-1672.346] (-1670.162) (-1684.606) * (-1694.204) [-1685.273] (-1676.131) (-1679.609) -- 0:12:55
257000 -- (-1671.931) (-1674.549) [-1669.872] (-1684.203) * (-1675.674) (-1672.214) (-1672.929) [-1675.183] -- 0:12:54
258000 -- [-1683.881] (-1689.970) (-1676.635) (-1674.874) * (-1678.708) [-1665.214] (-1695.888) (-1689.225) -- 0:12:53
259000 -- (-1685.956) (-1686.181) (-1673.625) [-1665.024] * [-1665.881] (-1666.816) (-1688.049) (-1689.308) -- 0:12:52
260000 -- (-1674.165) (-1706.502) [-1672.565] (-1680.643) * [-1675.871] (-1668.566) (-1676.653) (-1695.445) -- 0:12:51
Average standard deviation of split frequencies: 0.012768
261000 -- (-1690.477) [-1671.895] (-1677.237) (-1674.206) * (-1673.958) (-1682.580) [-1668.930] (-1680.934) -- 0:12:50
262000 -- (-1676.609) [-1663.638] (-1683.485) (-1683.542) * (-1669.336) [-1676.696] (-1683.761) (-1682.527) -- 0:12:48
263000 -- (-1687.589) [-1674.521] (-1679.746) (-1694.657) * (-1676.662) (-1681.985) (-1676.080) [-1670.999] -- 0:12:47
264000 -- (-1674.547) (-1679.174) [-1664.774] (-1676.536) * (-1697.236) [-1673.078] (-1677.011) (-1674.950) -- 0:12:46
265000 -- (-1681.889) (-1673.956) [-1669.811] (-1672.628) * (-1684.824) (-1674.508) (-1677.278) [-1675.504] -- 0:12:45
Average standard deviation of split frequencies: 0.012305
266000 -- (-1672.325) (-1685.845) (-1677.990) [-1676.742] * (-1673.501) (-1695.509) [-1677.696] (-1681.560) -- 0:12:44
267000 -- [-1681.048] (-1681.114) (-1668.481) (-1679.138) * [-1664.479] (-1696.751) (-1681.866) (-1688.731) -- 0:12:43
268000 -- (-1675.368) [-1679.142] (-1683.590) (-1680.716) * (-1677.816) [-1673.579] (-1689.004) (-1688.007) -- 0:12:42
269000 -- (-1687.499) (-1677.085) [-1669.539] (-1678.119) * [-1672.460] (-1681.169) (-1678.086) (-1692.238) -- 0:12:40
270000 -- (-1688.228) (-1682.000) (-1677.126) [-1671.646] * (-1680.642) (-1671.646) (-1680.291) [-1669.244] -- 0:12:42
Average standard deviation of split frequencies: 0.012499
271000 -- (-1674.487) (-1676.649) (-1676.690) [-1685.146] * (-1684.706) [-1675.147] (-1679.311) (-1675.794) -- 0:12:41
272000 -- (-1682.156) [-1665.185] (-1677.307) (-1677.575) * [-1670.935] (-1682.118) (-1697.717) (-1671.677) -- 0:12:40
273000 -- (-1673.529) [-1669.249] (-1681.360) (-1682.760) * (-1685.154) (-1678.013) [-1668.613] (-1678.485) -- 0:12:38
274000 -- [-1662.992] (-1670.469) (-1684.589) (-1678.640) * (-1669.966) (-1671.431) [-1680.458] (-1692.593) -- 0:12:37
275000 -- (-1675.249) [-1664.796] (-1679.019) (-1670.332) * [-1666.890] (-1668.550) (-1687.914) (-1686.037) -- 0:12:36
Average standard deviation of split frequencies: 0.012434
276000 -- (-1678.430) [-1671.972] (-1678.544) (-1675.048) * (-1676.124) (-1673.485) [-1662.367] (-1677.289) -- 0:12:35
277000 -- (-1684.642) (-1684.401) (-1676.889) [-1671.526] * (-1679.161) (-1678.918) [-1669.248] (-1680.465) -- 0:12:34
278000 -- (-1685.118) [-1674.226] (-1672.836) (-1665.597) * (-1689.174) (-1670.343) (-1682.201) [-1665.601] -- 0:12:33
279000 -- (-1686.727) (-1681.999) (-1683.552) [-1665.815] * (-1675.114) (-1681.489) [-1672.910] (-1680.076) -- 0:12:32
280000 -- (-1685.250) (-1686.784) (-1682.620) [-1670.871] * (-1681.581) (-1679.296) (-1667.122) [-1683.038] -- 0:12:30
Average standard deviation of split frequencies: 0.013330
281000 -- (-1687.596) (-1686.153) (-1679.693) [-1667.334] * (-1682.487) [-1676.300] (-1666.427) (-1673.280) -- 0:12:29
282000 -- [-1668.702] (-1669.716) (-1692.698) (-1667.395) * (-1693.304) [-1672.610] (-1675.490) (-1682.563) -- 0:12:28
283000 -- (-1689.674) (-1675.217) (-1682.023) [-1674.858] * (-1679.095) (-1680.492) [-1670.315] (-1670.158) -- 0:12:27
284000 -- (-1695.922) (-1674.906) [-1674.959] (-1668.575) * (-1680.384) (-1689.245) [-1671.403] (-1670.799) -- 0:12:28
285000 -- (-1683.054) (-1683.182) (-1675.649) [-1674.978] * (-1690.182) (-1676.929) [-1671.557] (-1673.391) -- 0:12:27
Average standard deviation of split frequencies: 0.013590
286000 -- (-1684.159) (-1676.679) (-1683.884) [-1688.881] * (-1687.229) (-1683.005) (-1676.941) [-1664.412] -- 0:12:26
287000 -- (-1676.934) [-1672.274] (-1681.237) (-1681.940) * [-1684.271] (-1685.999) (-1687.799) (-1674.950) -- 0:12:25
288000 -- (-1687.629) [-1673.586] (-1684.785) (-1683.075) * (-1679.447) (-1670.230) [-1674.732] (-1679.069) -- 0:12:24
289000 -- [-1676.201] (-1678.267) (-1679.747) (-1676.981) * (-1669.301) (-1693.779) [-1680.699] (-1677.288) -- 0:12:22
290000 -- (-1668.196) (-1679.820) (-1677.945) [-1669.008] * (-1680.287) (-1671.647) (-1682.673) [-1667.496] -- 0:12:21
Average standard deviation of split frequencies: 0.013074
291000 -- [-1669.594] (-1674.422) (-1677.192) (-1679.091) * (-1682.140) [-1664.097] (-1672.241) (-1676.004) -- 0:12:20
292000 -- (-1675.425) [-1673.946] (-1671.815) (-1677.709) * (-1679.964) (-1676.369) [-1672.495] (-1680.641) -- 0:12:19
293000 -- (-1678.529) [-1674.220] (-1681.307) (-1687.338) * (-1689.734) (-1684.843) (-1682.391) [-1658.939] -- 0:12:18
294000 -- (-1676.224) (-1683.894) [-1673.086] (-1679.145) * (-1686.244) (-1674.843) (-1693.868) [-1680.444] -- 0:12:17
295000 -- (-1672.541) (-1676.330) [-1670.251] (-1691.956) * [-1667.901] (-1686.106) (-1688.745) (-1676.073) -- 0:12:16
Average standard deviation of split frequencies: 0.013473
296000 -- [-1684.839] (-1685.444) (-1678.956) (-1673.911) * [-1674.727] (-1688.399) (-1688.205) (-1677.454) -- 0:12:14
297000 -- (-1699.820) (-1687.337) [-1663.897] (-1683.574) * (-1672.261) (-1686.172) (-1687.290) [-1681.803] -- 0:12:13
298000 -- (-1681.189) (-1678.651) [-1672.073] (-1683.473) * [-1672.866] (-1684.250) (-1685.221) (-1683.585) -- 0:12:12
299000 -- [-1661.739] (-1675.032) (-1677.143) (-1686.002) * (-1685.469) [-1676.778] (-1680.776) (-1681.924) -- 0:12:11
300000 -- (-1671.556) (-1687.194) [-1681.493] (-1680.555) * [-1661.428] (-1680.919) (-1674.004) (-1685.739) -- 0:12:10
Average standard deviation of split frequencies: 0.013915
301000 -- [-1665.830] (-1690.960) (-1669.702) (-1682.361) * (-1665.180) (-1677.694) (-1696.121) [-1682.712] -- 0:12:09
302000 -- (-1673.881) (-1680.698) [-1670.500] (-1689.873) * (-1672.015) (-1677.835) (-1699.074) [-1669.460] -- 0:12:08
303000 -- (-1689.089) (-1701.760) [-1668.569] (-1680.146) * [-1670.399] (-1684.079) (-1682.270) (-1682.994) -- 0:12:06
304000 -- (-1685.100) (-1698.614) [-1671.749] (-1668.792) * [-1671.396] (-1674.505) (-1681.965) (-1675.776) -- 0:12:05
305000 -- (-1675.369) (-1673.267) [-1673.228] (-1681.785) * (-1682.637) [-1668.895] (-1681.485) (-1685.747) -- 0:12:04
Average standard deviation of split frequencies: 0.012747
306000 -- [-1668.540] (-1668.758) (-1690.662) (-1679.895) * (-1677.254) [-1671.196] (-1676.819) (-1683.433) -- 0:12:03
307000 -- (-1676.755) (-1669.709) (-1681.314) [-1678.339] * (-1689.803) [-1674.230] (-1671.632) (-1681.753) -- 0:12:02
308000 -- [-1666.835] (-1680.663) (-1675.458) (-1687.653) * (-1667.732) [-1670.494] (-1673.928) (-1670.622) -- 0:12:01
309000 -- [-1664.501] (-1669.757) (-1679.322) (-1686.941) * (-1675.939) [-1682.785] (-1690.452) (-1673.179) -- 0:12:00
310000 -- (-1666.453) (-1673.529) [-1668.425] (-1691.355) * [-1668.999] (-1678.927) (-1665.298) (-1683.226) -- 0:11:58
Average standard deviation of split frequencies: 0.013232
311000 -- [-1673.334] (-1674.481) (-1691.586) (-1686.787) * (-1692.522) (-1675.028) [-1682.980] (-1670.537) -- 0:11:57
312000 -- (-1675.250) [-1669.344] (-1692.509) (-1674.938) * (-1685.918) [-1673.346] (-1675.188) (-1676.075) -- 0:11:58
313000 -- (-1696.592) [-1664.695] (-1683.803) (-1668.943) * (-1675.549) (-1678.982) [-1665.255] (-1665.776) -- 0:11:57
314000 -- [-1685.728] (-1678.293) (-1674.008) (-1689.234) * [-1681.403] (-1676.281) (-1679.105) (-1678.677) -- 0:11:56
315000 -- [-1668.083] (-1683.534) (-1673.027) (-1676.212) * [-1670.402] (-1693.670) (-1672.637) (-1677.902) -- 0:11:55
Average standard deviation of split frequencies: 0.012939
316000 -- [-1675.723] (-1695.180) (-1680.930) (-1672.104) * (-1686.893) (-1671.012) [-1670.467] (-1674.135) -- 0:11:54
317000 -- (-1678.197) [-1684.559] (-1672.883) (-1675.124) * (-1675.960) [-1677.001] (-1674.119) (-1686.226) -- 0:11:53
318000 -- [-1684.640] (-1666.612) (-1690.576) (-1675.341) * (-1675.075) [-1674.959] (-1674.378) (-1686.431) -- 0:11:52
319000 -- (-1687.631) [-1663.234] (-1686.487) (-1688.813) * (-1671.875) [-1670.202] (-1695.594) (-1677.472) -- 0:11:50
320000 -- [-1672.889] (-1684.410) (-1670.595) (-1687.186) * (-1673.341) [-1663.024] (-1683.614) (-1681.471) -- 0:11:49
Average standard deviation of split frequencies: 0.012762
321000 -- (-1686.571) (-1674.134) [-1675.317] (-1677.990) * [-1677.874] (-1692.227) (-1672.456) (-1699.301) -- 0:11:48
322000 -- [-1666.892] (-1671.394) (-1684.238) (-1691.532) * [-1679.546] (-1685.125) (-1683.806) (-1690.905) -- 0:11:47
323000 -- (-1672.948) (-1677.972) [-1679.921] (-1676.332) * (-1692.406) [-1673.384] (-1674.027) (-1678.512) -- 0:11:46
324000 -- (-1670.014) [-1679.932] (-1680.438) (-1673.901) * [-1668.745] (-1672.848) (-1671.400) (-1700.265) -- 0:11:45
325000 -- (-1685.580) (-1682.067) [-1667.902] (-1684.463) * (-1677.424) [-1668.616] (-1679.407) (-1681.218) -- 0:11:44
Average standard deviation of split frequencies: 0.012291
326000 -- (-1677.433) (-1675.118) [-1672.412] (-1675.843) * [-1671.655] (-1687.869) (-1678.552) (-1676.525) -- 0:11:42
327000 -- [-1666.154] (-1679.480) (-1682.552) (-1689.058) * (-1681.393) (-1685.121) (-1676.516) [-1671.989] -- 0:11:41
328000 -- (-1670.380) (-1678.234) [-1676.929] (-1672.698) * (-1669.316) (-1690.578) (-1690.959) [-1664.257] -- 0:11:40
329000 -- (-1678.422) (-1678.947) (-1682.411) [-1684.431] * [-1666.618] (-1690.776) (-1671.468) (-1661.281) -- 0:11:39
330000 -- (-1690.626) (-1684.196) (-1678.729) [-1670.553] * (-1672.186) [-1675.899] (-1671.607) (-1686.106) -- 0:11:38
Average standard deviation of split frequencies: 0.011947
331000 -- (-1692.091) [-1675.291] (-1693.461) (-1676.392) * (-1672.424) (-1680.315) [-1673.093] (-1687.183) -- 0:11:39
332000 -- [-1675.052] (-1688.911) (-1680.761) (-1681.982) * [-1665.954] (-1677.070) (-1681.389) (-1680.179) -- 0:11:38
333000 -- [-1668.602] (-1671.956) (-1683.332) (-1675.054) * (-1678.256) (-1681.078) (-1685.208) [-1675.705] -- 0:11:37
334000 -- (-1676.312) (-1677.749) [-1662.479] (-1690.151) * (-1678.636) [-1676.135] (-1688.476) (-1682.660) -- 0:11:35
335000 -- (-1674.186) (-1679.662) [-1669.440] (-1680.174) * [-1672.480] (-1667.626) (-1683.665) (-1673.164) -- 0:11:34
Average standard deviation of split frequencies: 0.012398
336000 -- (-1681.045) (-1679.022) [-1671.416] (-1689.408) * (-1684.046) (-1670.007) [-1677.388] (-1676.626) -- 0:11:33
337000 -- (-1673.662) [-1663.299] (-1684.881) (-1677.629) * (-1680.850) [-1667.383] (-1696.128) (-1676.508) -- 0:11:32
338000 -- [-1666.468] (-1683.311) (-1680.402) (-1688.176) * [-1670.446] (-1682.686) (-1684.392) (-1673.833) -- 0:11:31
339000 -- [-1684.101] (-1684.392) (-1687.326) (-1700.743) * [-1671.402] (-1670.483) (-1688.663) (-1683.626) -- 0:11:30
340000 -- [-1680.254] (-1677.470) (-1685.109) (-1693.653) * (-1684.071) (-1669.811) (-1699.200) [-1677.877] -- 0:11:29
Average standard deviation of split frequencies: 0.012172
341000 -- (-1697.600) (-1681.064) [-1663.739] (-1686.205) * [-1682.534] (-1674.978) (-1673.635) (-1676.426) -- 0:11:27
342000 -- (-1682.329) (-1683.554) [-1667.332] (-1701.284) * (-1689.689) [-1680.959] (-1682.524) (-1691.258) -- 0:11:26
343000 -- (-1679.010) [-1674.915] (-1672.340) (-1671.600) * (-1684.100) (-1683.525) [-1671.265] (-1690.704) -- 0:11:25
344000 -- (-1671.749) [-1668.197] (-1680.803) (-1673.492) * [-1669.838] (-1676.101) (-1692.166) (-1681.883) -- 0:11:24
345000 -- [-1671.103] (-1675.516) (-1688.678) (-1681.982) * (-1682.715) (-1678.684) [-1667.915] (-1688.409) -- 0:11:23
Average standard deviation of split frequencies: 0.012179
346000 -- (-1686.208) (-1675.476) [-1693.372] (-1679.283) * (-1679.948) [-1679.789] (-1678.253) (-1684.591) -- 0:11:22
347000 -- (-1688.163) (-1667.130) [-1672.755] (-1676.896) * (-1692.529) (-1681.658) [-1675.385] (-1678.151) -- 0:11:21
348000 -- (-1677.523) [-1682.643] (-1690.619) (-1676.897) * (-1684.124) [-1677.017] (-1680.765) (-1680.665) -- 0:11:21
349000 -- (-1685.243) [-1671.592] (-1684.665) (-1674.016) * [-1675.567] (-1677.132) (-1683.226) (-1677.888) -- 0:11:20
350000 -- (-1684.545) (-1675.637) [-1681.178] (-1674.892) * [-1674.654] (-1673.605) (-1678.707) (-1681.631) -- 0:11:19
Average standard deviation of split frequencies: 0.011623
351000 -- (-1683.505) (-1682.753) [-1676.397] (-1669.954) * (-1683.467) [-1666.597] (-1675.825) (-1691.076) -- 0:11:18
352000 -- [-1674.838] (-1684.579) (-1680.543) (-1677.741) * (-1673.529) (-1682.198) (-1696.065) [-1680.471] -- 0:11:17
353000 -- [-1673.762] (-1690.615) (-1680.107) (-1677.297) * [-1678.856] (-1678.911) (-1680.354) (-1690.873) -- 0:11:16
354000 -- (-1672.439) (-1687.660) (-1684.844) [-1681.590] * [-1668.976] (-1671.243) (-1682.094) (-1683.788) -- 0:11:15
355000 -- (-1680.205) [-1674.940] (-1677.004) (-1686.516) * (-1682.643) [-1668.589] (-1685.712) (-1686.725) -- 0:11:14
Average standard deviation of split frequencies: 0.011918
356000 -- (-1682.314) [-1680.955] (-1674.253) (-1689.316) * [-1678.638] (-1672.607) (-1690.546) (-1691.496) -- 0:11:12
357000 -- (-1669.304) (-1671.976) (-1676.036) [-1676.924] * (-1677.915) (-1692.876) [-1674.181] (-1672.226) -- 0:11:11
358000 -- (-1687.630) (-1681.121) [-1666.865] (-1691.274) * (-1665.737) (-1684.806) [-1662.687] (-1679.921) -- 0:11:10
359000 -- [-1672.828] (-1688.670) (-1697.814) (-1672.484) * (-1677.025) (-1675.816) [-1670.438] (-1683.486) -- 0:11:09
360000 -- (-1672.247) (-1683.608) (-1685.170) [-1670.464] * (-1671.515) [-1675.570] (-1678.674) (-1688.146) -- 0:11:08
Average standard deviation of split frequencies: 0.011996
361000 -- (-1691.955) (-1681.042) (-1686.408) [-1672.259] * (-1676.250) (-1682.343) [-1674.973] (-1674.932) -- 0:11:07
362000 -- [-1667.414] (-1681.016) (-1691.264) (-1680.405) * [-1669.917] (-1676.546) (-1684.829) (-1678.955) -- 0:11:06
363000 -- (-1680.020) (-1675.688) [-1669.708] (-1684.963) * (-1691.827) (-1686.258) [-1678.897] (-1683.299) -- 0:11:05
364000 -- (-1667.197) (-1680.277) [-1679.862] (-1697.193) * (-1688.944) (-1676.271) (-1678.805) [-1665.918] -- 0:11:03
365000 -- (-1677.930) [-1675.816] (-1680.361) (-1682.328) * (-1676.101) [-1659.587] (-1673.484) (-1670.435) -- 0:11:02
Average standard deviation of split frequencies: 0.011243
366000 -- [-1677.580] (-1674.666) (-1672.128) (-1677.407) * (-1683.785) [-1675.093] (-1687.847) (-1674.217) -- 0:11:01
367000 -- (-1682.947) (-1695.466) (-1676.934) [-1668.501] * (-1682.385) [-1673.788] (-1691.104) (-1689.461) -- 0:11:00
368000 -- (-1691.740) (-1682.079) (-1679.488) [-1670.805] * (-1683.447) [-1669.089] (-1694.786) (-1670.045) -- 0:10:59
369000 -- (-1690.215) (-1689.241) [-1673.013] (-1683.418) * (-1682.990) (-1694.295) (-1678.734) [-1667.229] -- 0:10:58
370000 -- (-1691.192) (-1676.029) (-1666.285) [-1687.888] * (-1667.329) (-1674.561) (-1682.698) [-1663.750] -- 0:10:57
Average standard deviation of split frequencies: 0.011338
371000 -- (-1694.490) (-1678.567) [-1670.880] (-1674.308) * (-1685.098) (-1670.268) (-1692.216) [-1673.505] -- 0:10:56
372000 -- (-1685.745) [-1670.104] (-1687.267) (-1676.280) * (-1692.451) [-1672.941] (-1678.133) (-1673.491) -- 0:10:56
373000 -- (-1680.579) (-1674.636) [-1665.932] (-1695.856) * (-1684.459) (-1673.553) (-1674.811) [-1669.043] -- 0:10:55
374000 -- [-1669.684] (-1675.050) (-1675.448) (-1698.177) * (-1685.964) (-1671.843) [-1676.030] (-1682.623) -- 0:10:54
375000 -- (-1681.292) [-1676.650] (-1674.704) (-1672.164) * (-1685.424) (-1685.513) [-1670.973] (-1683.936) -- 0:10:53
Average standard deviation of split frequencies: 0.011365
376000 -- (-1674.738) (-1684.516) (-1674.079) [-1668.242] * (-1675.940) (-1668.413) (-1677.054) [-1674.946] -- 0:10:52
377000 -- (-1676.869) (-1680.595) (-1672.477) [-1682.269] * (-1667.961) (-1681.395) [-1675.003] (-1683.824) -- 0:10:51
378000 -- [-1670.011] (-1697.987) (-1675.540) (-1689.231) * [-1669.392] (-1677.634) (-1664.715) (-1681.423) -- 0:10:49
379000 -- (-1676.914) [-1673.929] (-1669.462) (-1699.821) * (-1680.070) (-1674.822) [-1675.856] (-1679.853) -- 0:10:48
380000 -- [-1671.367] (-1666.087) (-1697.323) (-1684.533) * (-1676.043) [-1675.021] (-1670.176) (-1685.246) -- 0:10:47
Average standard deviation of split frequencies: 0.012219
381000 -- (-1681.617) [-1671.443] (-1702.493) (-1686.570) * (-1677.136) [-1669.356] (-1682.104) (-1670.137) -- 0:10:46
382000 -- (-1672.696) [-1675.124] (-1674.204) (-1690.336) * (-1672.860) (-1672.201) (-1698.231) [-1666.901] -- 0:10:45
383000 -- [-1671.366] (-1688.856) (-1681.679) (-1694.948) * (-1684.305) [-1674.968] (-1691.923) (-1687.835) -- 0:10:44
384000 -- (-1700.566) [-1664.555] (-1685.129) (-1677.237) * (-1668.619) (-1683.444) [-1673.435] (-1688.569) -- 0:10:43
385000 -- (-1677.162) (-1678.895) (-1678.418) [-1678.196] * (-1672.184) [-1680.842] (-1681.566) (-1699.509) -- 0:10:42
Average standard deviation of split frequencies: 0.012451
386000 -- (-1674.550) [-1677.462] (-1679.091) (-1695.791) * (-1672.681) [-1672.469] (-1678.698) (-1709.359) -- 0:10:41
387000 -- [-1671.164] (-1674.511) (-1672.496) (-1673.268) * [-1672.931] (-1677.417) (-1681.955) (-1689.647) -- 0:10:39
388000 -- (-1689.797) [-1686.310] (-1686.750) (-1681.091) * (-1673.868) (-1686.277) (-1670.301) [-1676.995] -- 0:10:38
389000 -- (-1682.394) [-1682.551] (-1682.757) (-1696.258) * (-1679.913) [-1677.973] (-1683.233) (-1684.708) -- 0:10:37
390000 -- (-1689.434) [-1675.457] (-1676.364) (-1701.351) * (-1682.252) [-1666.707] (-1679.654) (-1677.060) -- 0:10:36
Average standard deviation of split frequencies: 0.012696
391000 -- (-1693.523) (-1675.169) [-1676.703] (-1684.443) * (-1673.419) (-1674.483) (-1674.416) [-1663.342] -- 0:10:35
392000 -- (-1688.946) (-1684.200) (-1687.810) [-1674.550] * (-1675.257) (-1686.565) (-1690.467) [-1661.441] -- 0:10:34
393000 -- [-1675.193] (-1684.952) (-1681.206) (-1679.463) * [-1678.002] (-1677.259) (-1681.026) (-1672.416) -- 0:10:34
394000 -- (-1674.175) [-1672.897] (-1690.243) (-1675.316) * (-1683.197) (-1681.348) [-1676.900] (-1681.674) -- 0:10:33
395000 -- (-1677.004) (-1689.515) (-1688.686) [-1670.409] * (-1685.389) [-1683.169] (-1684.723) (-1674.939) -- 0:10:32
Average standard deviation of split frequencies: 0.012740
396000 -- (-1686.189) [-1697.963] (-1669.565) (-1687.155) * [-1669.964] (-1678.660) (-1685.855) (-1664.696) -- 0:10:31
397000 -- (-1674.105) (-1674.995) [-1667.037] (-1680.406) * (-1678.665) (-1674.821) (-1678.190) [-1666.091] -- 0:10:30
398000 -- (-1678.174) [-1665.698] (-1687.364) (-1673.891) * (-1682.173) (-1679.202) (-1683.196) [-1679.184] -- 0:10:29
399000 -- (-1670.887) (-1679.225) [-1675.461] (-1677.953) * (-1686.252) [-1675.901] (-1677.357) (-1671.928) -- 0:10:28
400000 -- (-1674.175) [-1663.782] (-1670.335) (-1686.004) * (-1670.457) [-1676.723] (-1667.472) (-1683.867) -- 0:10:27
Average standard deviation of split frequencies: 0.012892
401000 -- (-1676.754) (-1683.053) [-1661.581] (-1673.962) * [-1667.952] (-1698.934) (-1673.797) (-1673.943) -- 0:10:25
402000 -- (-1692.887) (-1683.129) (-1680.422) [-1666.938] * (-1678.741) (-1697.797) (-1681.689) [-1668.774] -- 0:10:24
403000 -- (-1684.740) (-1676.639) [-1671.849] (-1683.156) * (-1679.031) [-1670.347] (-1677.158) (-1684.396) -- 0:10:23
404000 -- (-1675.929) [-1678.748] (-1684.530) (-1675.346) * (-1677.640) [-1669.035] (-1685.351) (-1681.272) -- 0:10:22
405000 -- [-1673.437] (-1679.710) (-1690.916) (-1673.699) * (-1682.102) (-1675.086) [-1673.858] (-1672.001) -- 0:10:21
Average standard deviation of split frequencies: 0.013266
406000 -- (-1694.850) [-1672.587] (-1679.919) (-1680.999) * (-1675.647) [-1666.979] (-1678.311) (-1678.235) -- 0:10:20
407000 -- (-1681.686) (-1678.055) [-1668.297] (-1674.462) * (-1680.545) [-1671.853] (-1691.746) (-1676.138) -- 0:10:19
408000 -- [-1674.982] (-1674.979) (-1680.929) (-1690.252) * [-1663.763] (-1679.040) (-1675.388) (-1702.161) -- 0:10:19
409000 -- (-1692.906) (-1681.593) [-1669.007] (-1679.222) * [-1669.468] (-1703.277) (-1685.716) (-1681.009) -- 0:10:18
410000 -- (-1688.614) (-1672.534) (-1664.656) [-1690.255] * (-1675.870) (-1694.141) (-1681.498) [-1676.164] -- 0:10:17
Average standard deviation of split frequencies: 0.012407
411000 -- (-1675.085) (-1670.465) [-1671.736] (-1679.143) * [-1678.288] (-1680.697) (-1693.404) (-1682.036) -- 0:10:16
412000 -- (-1674.686) [-1678.194] (-1678.707) (-1677.547) * (-1674.716) (-1683.158) [-1675.279] (-1675.827) -- 0:10:15
413000 -- (-1677.347) [-1676.279] (-1685.673) (-1672.933) * (-1671.685) (-1687.179) (-1685.558) [-1670.214] -- 0:10:14
414000 -- [-1671.362] (-1681.074) (-1676.073) (-1673.091) * [-1672.126] (-1699.568) (-1681.864) (-1667.531) -- 0:10:12
415000 -- [-1670.787] (-1678.442) (-1682.948) (-1671.193) * (-1687.888) (-1684.326) (-1687.824) [-1663.611] -- 0:10:11
Average standard deviation of split frequencies: 0.012803
416000 -- [-1678.259] (-1676.618) (-1676.759) (-1676.828) * (-1672.625) [-1670.739] (-1680.884) (-1680.711) -- 0:10:10
417000 -- (-1682.266) (-1674.284) [-1667.838] (-1687.521) * (-1677.718) (-1681.943) (-1678.940) [-1674.018] -- 0:10:09
418000 -- (-1689.927) [-1666.278] (-1665.117) (-1688.806) * (-1676.054) [-1676.059] (-1676.635) (-1672.571) -- 0:10:08
419000 -- (-1679.890) [-1679.391] (-1672.080) (-1674.098) * (-1668.205) [-1674.456] (-1672.528) (-1682.599) -- 0:10:07
420000 -- (-1679.141) (-1685.160) (-1677.232) [-1667.597] * [-1692.682] (-1683.242) (-1681.393) (-1682.244) -- 0:10:06
Average standard deviation of split frequencies: 0.013252
421000 -- (-1681.156) [-1673.124] (-1689.977) (-1665.229) * (-1688.337) (-1664.836) [-1674.448] (-1682.419) -- 0:10:05
422000 -- (-1673.904) [-1680.794] (-1686.941) (-1673.288) * [-1676.361] (-1666.424) (-1675.684) (-1681.572) -- 0:10:04
423000 -- (-1672.548) (-1684.877) [-1667.705] (-1680.161) * (-1678.054) [-1673.245] (-1675.957) (-1690.547) -- 0:10:02
424000 -- (-1675.873) (-1698.816) [-1670.900] (-1675.033) * [-1678.139] (-1685.933) (-1679.936) (-1692.472) -- 0:10:01
425000 -- (-1674.435) [-1676.049] (-1692.605) (-1681.540) * (-1681.684) [-1670.435] (-1683.758) (-1668.901) -- 0:10:00
Average standard deviation of split frequencies: 0.012949
426000 -- (-1688.016) (-1686.722) (-1684.399) [-1675.204] * (-1696.435) (-1665.578) [-1664.909] (-1674.363) -- 0:09:59
427000 -- [-1678.833] (-1682.111) (-1675.659) (-1682.410) * (-1693.320) (-1672.644) (-1683.937) [-1669.736] -- 0:09:58
428000 -- [-1669.982] (-1677.776) (-1676.260) (-1684.302) * (-1674.834) (-1677.651) (-1692.939) [-1667.048] -- 0:09:57
429000 -- (-1681.744) (-1678.913) [-1671.164] (-1684.592) * (-1682.426) (-1681.746) [-1682.378] (-1693.742) -- 0:09:56
430000 -- (-1678.008) (-1686.356) [-1675.418] (-1682.476) * (-1680.751) (-1674.820) (-1672.897) [-1682.366] -- 0:09:55
Average standard deviation of split frequencies: 0.012623
431000 -- [-1676.529] (-1673.820) (-1684.007) (-1681.758) * (-1679.057) (-1695.915) (-1674.307) [-1670.116] -- 0:09:54
432000 -- (-1684.081) (-1680.917) (-1673.257) [-1673.504] * (-1684.081) (-1692.370) [-1680.841] (-1663.388) -- 0:09:52
433000 -- (-1688.581) [-1672.090] (-1683.303) (-1678.752) * [-1665.213] (-1690.095) (-1675.237) (-1680.199) -- 0:09:51
434000 -- (-1673.950) (-1679.735) [-1678.218] (-1692.031) * (-1686.835) [-1673.511] (-1686.374) (-1685.527) -- 0:09:50
435000 -- (-1674.911) [-1665.301] (-1678.187) (-1680.837) * (-1684.015) [-1672.314] (-1674.680) (-1678.887) -- 0:09:49
Average standard deviation of split frequencies: 0.012928
436000 -- (-1680.325) (-1684.640) [-1666.575] (-1674.993) * [-1667.190] (-1676.277) (-1673.123) (-1672.712) -- 0:09:48
437000 -- (-1675.558) (-1684.660) (-1678.866) [-1669.549] * (-1676.875) (-1691.038) (-1671.118) [-1673.183] -- 0:09:47
438000 -- (-1674.615) [-1678.473] (-1677.657) (-1705.750) * [-1675.594] (-1667.040) (-1682.381) (-1674.377) -- 0:09:46
439000 -- [-1676.281] (-1679.613) (-1683.142) (-1682.443) * [-1679.227] (-1674.198) (-1675.573) (-1678.719) -- 0:09:45
440000 -- (-1670.196) (-1680.401) [-1668.577] (-1701.045) * (-1673.402) (-1677.938) [-1676.456] (-1696.078) -- 0:09:44
Average standard deviation of split frequencies: 0.012908
441000 -- (-1683.685) [-1669.456] (-1678.168) (-1688.482) * (-1675.865) (-1680.010) (-1676.413) [-1670.632] -- 0:09:43
442000 -- (-1684.985) (-1675.277) [-1678.811] (-1689.354) * (-1675.174) (-1693.511) [-1677.042] (-1670.912) -- 0:09:41
443000 -- (-1683.070) (-1678.842) (-1675.445) [-1668.583] * (-1675.683) (-1672.407) (-1684.016) [-1679.366] -- 0:09:40
444000 -- (-1673.144) [-1672.203] (-1669.671) (-1688.232) * (-1678.949) (-1683.233) [-1678.350] (-1682.720) -- 0:09:39
445000 -- (-1675.416) (-1671.958) [-1675.828] (-1695.483) * (-1683.006) [-1676.678] (-1688.636) (-1687.413) -- 0:09:38
Average standard deviation of split frequencies: 0.011759
446000 -- (-1672.203) (-1678.880) [-1659.130] (-1688.270) * (-1680.949) [-1672.951] (-1669.536) (-1678.035) -- 0:09:37
447000 -- (-1673.984) [-1667.257] (-1691.953) (-1680.201) * (-1678.898) (-1682.600) [-1668.206] (-1684.142) -- 0:09:36
448000 -- (-1675.766) [-1668.985] (-1685.060) (-1681.657) * (-1678.554) [-1674.735] (-1684.425) (-1680.431) -- 0:09:35
449000 -- [-1666.726] (-1689.348) (-1681.512) (-1684.066) * (-1677.048) [-1675.576] (-1686.412) (-1665.546) -- 0:09:34
450000 -- (-1681.687) (-1678.379) [-1663.085] (-1678.260) * (-1676.520) (-1680.399) (-1680.243) [-1666.992] -- 0:09:33
Average standard deviation of split frequencies: 0.012484
451000 -- [-1668.719] (-1685.232) (-1672.777) (-1693.556) * (-1684.136) (-1676.462) (-1669.500) [-1681.248] -- 0:09:32
452000 -- [-1667.652] (-1681.559) (-1679.177) (-1683.539) * (-1677.153) (-1682.576) (-1692.884) [-1676.339] -- 0:09:31
453000 -- (-1668.655) [-1673.285] (-1684.794) (-1675.567) * (-1676.413) [-1673.367] (-1684.854) (-1684.795) -- 0:09:31
454000 -- [-1674.136] (-1679.175) (-1703.922) (-1673.086) * (-1672.010) (-1679.215) [-1684.362] (-1681.201) -- 0:09:30
455000 -- (-1677.819) [-1678.367] (-1685.543) (-1684.102) * (-1694.662) (-1679.520) (-1689.387) [-1679.884] -- 0:09:28
Average standard deviation of split frequencies: 0.012405
456000 -- (-1675.893) (-1681.374) [-1667.384] (-1697.705) * [-1684.430] (-1676.162) (-1690.426) (-1673.674) -- 0:09:27
457000 -- (-1681.495) (-1680.594) [-1670.246] (-1688.990) * [-1679.237] (-1674.702) (-1685.103) (-1674.623) -- 0:09:26
458000 -- (-1681.472) (-1685.898) (-1671.994) [-1664.324] * [-1667.449] (-1679.150) (-1671.585) (-1686.919) -- 0:09:25
459000 -- (-1672.793) (-1687.845) (-1678.767) [-1671.913] * (-1691.900) (-1683.136) (-1687.311) [-1679.678] -- 0:09:24
460000 -- [-1675.385] (-1678.500) (-1671.610) (-1671.707) * [-1677.587] (-1685.972) (-1676.829) (-1681.077) -- 0:09:23
Average standard deviation of split frequencies: 0.013394
461000 -- (-1671.000) (-1690.748) (-1697.332) [-1678.595] * (-1698.419) (-1672.571) (-1685.296) [-1682.473] -- 0:09:22
462000 -- (-1671.010) [-1669.129] (-1687.696) (-1680.012) * (-1677.094) [-1679.643] (-1693.806) (-1687.951) -- 0:09:21
463000 -- (-1671.613) [-1667.841] (-1693.727) (-1681.819) * (-1691.566) [-1668.909] (-1680.376) (-1666.925) -- 0:09:20
464000 -- (-1696.381) (-1679.650) [-1684.067] (-1686.694) * (-1678.412) (-1671.908) (-1665.391) [-1673.377] -- 0:09:19
465000 -- (-1680.678) [-1674.705] (-1683.932) (-1686.219) * (-1675.383) [-1686.020] (-1663.378) (-1679.721) -- 0:09:18
Average standard deviation of split frequencies: 0.013459
466000 -- (-1688.395) (-1673.537) (-1672.912) [-1680.166] * (-1676.051) (-1672.588) [-1669.832] (-1685.983) -- 0:09:16
467000 -- (-1684.855) (-1674.863) (-1685.189) [-1672.911] * (-1676.674) [-1674.705] (-1671.856) (-1669.387) -- 0:09:15
468000 -- (-1681.408) (-1681.600) (-1678.773) [-1671.406] * (-1668.210) (-1672.710) [-1677.314] (-1669.247) -- 0:09:15
469000 -- [-1673.261] (-1684.932) (-1671.896) (-1674.996) * (-1683.110) (-1685.370) [-1678.590] (-1674.323) -- 0:09:14
470000 -- (-1675.189) (-1675.211) (-1683.445) [-1674.117] * (-1673.795) (-1672.845) (-1684.382) [-1684.161] -- 0:09:13
Average standard deviation of split frequencies: 0.012893
471000 -- (-1690.716) [-1673.079] (-1679.184) (-1683.171) * (-1687.811) (-1679.722) (-1687.437) [-1669.407] -- 0:09:12
472000 -- (-1678.952) [-1680.606] (-1679.303) (-1676.432) * (-1682.830) [-1669.852] (-1680.978) (-1680.207) -- 0:09:11
473000 -- [-1676.953] (-1671.964) (-1689.252) (-1670.809) * (-1692.338) [-1670.915] (-1682.036) (-1679.622) -- 0:09:10
474000 -- [-1677.435] (-1676.880) (-1684.580) (-1690.969) * [-1665.938] (-1680.699) (-1680.770) (-1674.139) -- 0:09:09
475000 -- (-1690.890) [-1670.925] (-1671.583) (-1690.714) * [-1667.142] (-1693.278) (-1674.601) (-1690.968) -- 0:09:08
Average standard deviation of split frequencies: 0.012706
476000 -- (-1685.773) [-1662.582] (-1685.484) (-1671.223) * (-1668.249) [-1671.758] (-1679.463) (-1685.526) -- 0:09:07
477000 -- (-1679.340) [-1663.370] (-1682.326) (-1669.102) * (-1679.164) (-1678.493) (-1688.284) [-1676.895] -- 0:09:06
478000 -- (-1691.339) (-1679.620) (-1689.850) [-1670.913] * [-1676.536] (-1672.796) (-1696.710) (-1682.276) -- 0:09:04
479000 -- (-1686.072) [-1674.678] (-1676.957) (-1695.295) * (-1676.984) [-1680.213] (-1689.797) (-1683.713) -- 0:09:03
480000 -- (-1684.434) [-1679.023] (-1707.610) (-1684.180) * [-1678.741] (-1688.366) (-1680.476) (-1675.087) -- 0:09:02
Average standard deviation of split frequencies: 0.012877
481000 -- (-1680.692) [-1677.894] (-1687.299) (-1685.283) * [-1679.729] (-1671.608) (-1677.052) (-1683.949) -- 0:09:01
482000 -- (-1687.833) (-1675.781) (-1686.843) [-1675.716] * [-1669.791] (-1667.025) (-1673.445) (-1679.309) -- 0:09:00
483000 -- (-1689.548) (-1677.211) [-1667.371] (-1674.541) * (-1675.532) (-1674.344) (-1679.728) [-1680.142] -- 0:08:59
484000 -- (-1679.554) (-1679.617) [-1676.882] (-1669.717) * (-1674.605) (-1682.699) (-1689.188) [-1681.498] -- 0:08:58
485000 -- (-1665.748) (-1698.745) [-1664.965] (-1682.738) * (-1689.283) (-1685.979) (-1681.091) [-1667.692] -- 0:08:57
Average standard deviation of split frequencies: 0.012546
486000 -- (-1686.665) (-1686.367) (-1695.152) [-1682.977] * (-1676.141) (-1672.823) [-1668.911] (-1675.965) -- 0:08:56
487000 -- (-1678.539) (-1677.106) [-1681.959] (-1685.522) * (-1683.350) (-1685.284) (-1684.077) [-1670.548] -- 0:08:55
488000 -- [-1674.297] (-1681.431) (-1681.407) (-1687.459) * (-1674.764) (-1688.749) (-1676.038) [-1673.971] -- 0:08:54
489000 -- (-1685.461) (-1675.232) [-1668.517] (-1682.923) * (-1676.485) (-1677.607) [-1674.837] (-1683.158) -- 0:08:52
490000 -- (-1678.977) [-1672.687] (-1681.180) (-1678.016) * (-1675.770) (-1683.387) [-1681.514] (-1689.647) -- 0:08:52
Average standard deviation of split frequencies: 0.012081
491000 -- (-1675.964) [-1678.316] (-1688.496) (-1675.624) * (-1668.766) [-1677.238] (-1690.430) (-1671.214) -- 0:08:51
492000 -- [-1671.628] (-1670.030) (-1700.419) (-1674.003) * (-1673.679) (-1676.476) [-1678.818] (-1692.871) -- 0:08:50
493000 -- (-1681.365) (-1681.578) (-1692.657) [-1664.559] * (-1670.896) (-1678.983) (-1676.234) [-1667.420] -- 0:08:49
494000 -- (-1683.191) (-1676.975) (-1678.213) [-1669.334] * (-1684.351) (-1685.927) [-1667.820] (-1675.857) -- 0:08:48
495000 -- (-1683.504) (-1673.357) (-1673.011) [-1677.577] * (-1681.904) (-1673.392) [-1676.406] (-1683.087) -- 0:08:47
Average standard deviation of split frequencies: 0.011839
496000 -- (-1685.562) [-1671.963] (-1671.256) (-1671.016) * (-1670.040) (-1684.760) [-1664.240] (-1670.642) -- 0:08:46
497000 -- (-1681.514) (-1667.627) [-1672.488] (-1682.985) * (-1678.611) [-1674.891] (-1682.931) (-1678.552) -- 0:08:45
498000 -- (-1677.099) [-1675.701] (-1668.800) (-1688.759) * (-1683.746) (-1677.653) (-1678.715) [-1673.867] -- 0:08:44
499000 -- (-1679.206) (-1678.020) (-1688.516) [-1673.832] * (-1679.678) (-1685.748) (-1684.926) [-1676.687] -- 0:08:43
500000 -- [-1664.249] (-1680.366) (-1693.032) (-1672.979) * (-1689.686) (-1682.687) (-1680.656) [-1673.567] -- 0:08:42
Average standard deviation of split frequencies: 0.011728
501000 -- [-1674.906] (-1685.492) (-1674.186) (-1671.161) * (-1687.877) [-1669.272] (-1685.826) (-1669.491) -- 0:08:40
502000 -- (-1688.076) (-1681.511) (-1677.502) [-1662.782] * (-1676.271) [-1674.153] (-1675.180) (-1673.083) -- 0:08:39
503000 -- (-1680.760) [-1683.674] (-1678.395) (-1668.289) * (-1680.670) (-1683.399) (-1688.641) [-1666.403] -- 0:08:38
504000 -- (-1675.793) (-1672.322) (-1674.902) [-1655.221] * (-1679.845) (-1671.230) [-1677.058] (-1685.098) -- 0:08:37
505000 -- (-1685.503) (-1670.058) (-1680.259) [-1662.594] * (-1697.596) (-1681.566) [-1668.202] (-1681.184) -- 0:08:36
Average standard deviation of split frequencies: 0.011576
506000 -- (-1678.337) (-1691.190) (-1683.298) [-1679.506] * (-1692.282) (-1684.973) (-1671.259) [-1681.806] -- 0:08:35
507000 -- (-1670.967) [-1683.232] (-1679.143) (-1687.356) * [-1680.622] (-1670.189) (-1676.253) (-1678.377) -- 0:08:34
508000 -- (-1670.915) (-1675.648) [-1668.254] (-1683.376) * [-1671.696] (-1687.626) (-1685.372) (-1671.930) -- 0:08:33
509000 -- (-1681.592) (-1684.145) (-1673.126) [-1678.784] * (-1667.846) [-1678.132] (-1674.591) (-1671.322) -- 0:08:32
510000 -- (-1689.079) (-1688.629) (-1676.595) [-1669.824] * (-1678.025) (-1685.364) (-1680.524) [-1676.247] -- 0:08:32
Average standard deviation of split frequencies: 0.012616
511000 -- (-1693.748) (-1668.816) (-1684.499) [-1665.850] * [-1678.433] (-1666.856) (-1678.075) (-1696.555) -- 0:08:31
512000 -- (-1676.097) (-1680.844) [-1668.901] (-1691.171) * [-1667.907] (-1691.278) (-1680.680) (-1677.469) -- 0:08:29
513000 -- [-1673.174] (-1685.189) (-1669.059) (-1678.008) * [-1664.525] (-1695.335) (-1681.185) (-1674.495) -- 0:08:28
514000 -- (-1684.347) (-1670.681) [-1664.785] (-1680.953) * [-1669.875] (-1678.419) (-1675.881) (-1682.246) -- 0:08:27
515000 -- (-1677.989) [-1673.576] (-1681.686) (-1672.465) * (-1677.744) [-1681.106] (-1679.350) (-1669.723) -- 0:08:26
Average standard deviation of split frequencies: 0.011937
516000 -- (-1681.411) [-1667.484] (-1682.090) (-1680.515) * (-1680.057) [-1674.712] (-1685.204) (-1681.014) -- 0:08:25
517000 -- (-1663.118) (-1677.273) [-1663.942] (-1693.564) * [-1662.718] (-1675.651) (-1694.553) (-1675.652) -- 0:08:24
518000 -- (-1681.016) [-1667.090] (-1674.678) (-1671.139) * [-1672.677] (-1684.993) (-1671.454) (-1670.388) -- 0:08:23
519000 -- (-1674.652) [-1679.215] (-1682.224) (-1675.689) * (-1677.251) (-1693.116) (-1683.186) [-1673.021] -- 0:08:22
520000 -- (-1677.174) (-1685.854) [-1665.941] (-1675.487) * (-1683.366) (-1691.614) (-1684.787) [-1676.584] -- 0:08:21
Average standard deviation of split frequencies: 0.011991
521000 -- (-1667.960) (-1698.493) [-1686.055] (-1672.187) * [-1678.537] (-1681.365) (-1674.546) (-1673.943) -- 0:08:20
522000 -- (-1687.632) (-1693.769) (-1688.435) [-1673.334] * (-1671.404) [-1677.433] (-1679.616) (-1688.002) -- 0:08:19
523000 -- (-1683.474) [-1679.641] (-1675.050) (-1673.321) * (-1677.382) (-1681.996) (-1676.900) [-1667.512] -- 0:08:17
524000 -- (-1679.525) (-1679.596) [-1681.749] (-1683.604) * [-1673.755] (-1670.096) (-1680.533) (-1695.188) -- 0:08:16
525000 -- [-1676.176] (-1674.280) (-1682.938) (-1678.413) * [-1688.359] (-1672.425) (-1681.651) (-1684.388) -- 0:08:15
Average standard deviation of split frequencies: 0.011690
526000 -- (-1683.175) [-1659.138] (-1692.028) (-1665.208) * (-1692.621) [-1675.581] (-1677.595) (-1688.369) -- 0:08:14
527000 -- (-1686.297) [-1663.262] (-1680.159) (-1682.585) * (-1680.551) [-1679.008] (-1672.391) (-1672.393) -- 0:08:13
528000 -- (-1696.425) [-1674.655] (-1677.688) (-1684.691) * (-1685.020) (-1686.842) (-1684.518) [-1675.455] -- 0:08:12
529000 -- (-1674.386) (-1682.838) [-1671.817] (-1674.099) * (-1677.200) (-1683.343) [-1673.296] (-1681.482) -- 0:08:11
530000 -- (-1687.710) (-1678.507) [-1671.417] (-1679.981) * [-1671.921] (-1679.332) (-1686.918) (-1673.295) -- 0:08:10
Average standard deviation of split frequencies: 0.011645
531000 -- [-1677.419] (-1675.085) (-1675.972) (-1682.264) * (-1707.175) (-1688.170) (-1676.084) [-1674.746] -- 0:08:09
532000 -- (-1681.526) (-1687.956) (-1687.387) [-1680.528] * (-1682.042) (-1677.080) [-1666.454] (-1670.671) -- 0:08:08
533000 -- (-1680.808) (-1675.488) [-1665.329] (-1689.975) * (-1672.786) (-1671.203) (-1667.099) [-1670.989] -- 0:08:08
534000 -- [-1675.893] (-1673.602) (-1687.255) (-1682.189) * (-1682.102) (-1672.941) (-1675.497) [-1670.692] -- 0:08:06
535000 -- (-1678.525) (-1679.880) [-1669.002] (-1691.535) * (-1671.397) (-1674.942) (-1684.904) [-1672.414] -- 0:08:05
Average standard deviation of split frequencies: 0.011653
536000 -- [-1665.745] (-1676.429) (-1701.660) (-1673.843) * (-1689.061) (-1689.354) (-1671.815) [-1666.356] -- 0:08:04
537000 -- [-1675.484] (-1681.220) (-1688.371) (-1671.530) * (-1674.054) (-1686.894) (-1673.238) [-1661.745] -- 0:08:03
538000 -- [-1672.787] (-1681.654) (-1685.860) (-1675.206) * (-1688.498) [-1674.843] (-1673.649) (-1673.745) -- 0:08:02
539000 -- [-1678.003] (-1669.806) (-1687.229) (-1671.791) * (-1681.249) [-1672.925] (-1674.509) (-1688.763) -- 0:08:01
540000 -- (-1684.873) (-1681.666) (-1670.200) [-1668.656] * [-1667.081] (-1668.867) (-1691.496) (-1680.554) -- 0:08:00
Average standard deviation of split frequencies: 0.011295
541000 -- [-1678.292] (-1688.235) (-1675.572) (-1667.801) * (-1690.371) [-1660.721] (-1687.975) (-1684.504) -- 0:07:59
542000 -- (-1688.487) (-1685.972) [-1667.870] (-1675.231) * (-1678.271) [-1658.838] (-1678.245) (-1681.807) -- 0:07:58
543000 -- (-1680.693) (-1677.761) (-1680.767) [-1685.927] * (-1676.588) [-1670.258] (-1682.223) (-1671.353) -- 0:07:57
544000 -- (-1674.420) [-1671.745] (-1671.508) (-1668.073) * (-1685.359) [-1666.798] (-1692.921) (-1667.922) -- 0:07:56
545000 -- (-1682.448) [-1677.058] (-1677.185) (-1686.135) * (-1692.500) (-1679.673) (-1667.648) [-1671.046] -- 0:07:55
Average standard deviation of split frequencies: 0.010361
546000 -- (-1672.772) (-1680.807) (-1684.819) [-1673.700] * [-1677.403] (-1676.866) (-1682.443) (-1682.941) -- 0:07:53
547000 -- (-1671.924) (-1676.723) (-1679.258) [-1676.327] * (-1684.339) [-1668.950] (-1680.660) (-1687.330) -- 0:07:52
548000 -- [-1674.150] (-1683.159) (-1685.108) (-1673.545) * (-1692.497) [-1676.042] (-1681.626) (-1677.272) -- 0:07:51
549000 -- [-1681.232] (-1671.831) (-1690.168) (-1671.926) * (-1682.258) [-1681.149] (-1670.567) (-1684.519) -- 0:07:50
550000 -- [-1676.369] (-1673.182) (-1674.189) (-1705.475) * (-1682.421) [-1667.617] (-1677.025) (-1677.729) -- 0:07:49
Average standard deviation of split frequencies: 0.010198
551000 -- (-1682.844) [-1669.836] (-1676.978) (-1681.801) * (-1683.148) (-1675.100) (-1681.886) [-1670.365] -- 0:07:48
552000 -- (-1691.362) [-1673.858] (-1682.455) (-1669.080) * (-1683.413) (-1668.180) (-1690.577) [-1677.641] -- 0:07:47
553000 -- (-1682.319) (-1684.768) (-1676.998) [-1672.104] * (-1689.065) (-1667.270) (-1682.447) [-1672.119] -- 0:07:47
554000 -- (-1672.756) (-1684.829) (-1666.696) [-1670.191] * (-1680.182) (-1689.144) (-1679.909) [-1682.451] -- 0:07:46
555000 -- (-1671.851) (-1676.226) [-1682.510] (-1682.028) * (-1679.528) (-1676.582) (-1705.804) [-1664.968] -- 0:07:45
Average standard deviation of split frequencies: 0.009759
556000 -- (-1675.379) (-1673.565) [-1663.274] (-1684.979) * (-1677.175) (-1673.270) [-1665.115] (-1678.923) -- 0:07:43
557000 -- (-1678.069) [-1681.464] (-1682.683) (-1687.585) * (-1674.763) (-1679.098) [-1675.992] (-1681.304) -- 0:07:42
558000 -- [-1685.334] (-1678.566) (-1683.413) (-1676.045) * (-1674.446) [-1672.069] (-1675.074) (-1684.230) -- 0:07:41
559000 -- (-1683.224) (-1689.777) [-1681.026] (-1679.965) * (-1681.791) [-1669.069] (-1681.879) (-1672.953) -- 0:07:40
560000 -- (-1698.983) (-1690.223) (-1676.919) [-1683.388] * [-1682.423] (-1672.599) (-1664.297) (-1683.265) -- 0:07:39
Average standard deviation of split frequencies: 0.009541
561000 -- (-1688.596) (-1686.220) [-1664.703] (-1679.360) * (-1688.448) (-1684.802) [-1669.623] (-1675.758) -- 0:07:38
562000 -- (-1690.795) (-1686.194) [-1673.383] (-1670.519) * (-1681.324) [-1671.972] (-1690.794) (-1676.194) -- 0:07:37
563000 -- (-1676.925) (-1673.951) [-1673.092] (-1674.916) * [-1682.597] (-1701.244) (-1673.543) (-1668.327) -- 0:07:36
564000 -- [-1677.773] (-1682.099) (-1676.818) (-1691.909) * (-1682.611) [-1666.277] (-1675.204) (-1674.110) -- 0:07:35
565000 -- [-1675.176] (-1680.136) (-1668.991) (-1685.394) * (-1680.198) [-1675.096] (-1689.404) (-1672.578) -- 0:07:34
Average standard deviation of split frequencies: 0.009463
566000 -- (-1671.124) (-1683.726) (-1670.615) [-1669.102] * (-1678.378) (-1671.238) [-1672.405] (-1672.914) -- 0:07:33
567000 -- [-1675.728] (-1678.593) (-1678.600) (-1676.762) * (-1677.589) (-1692.912) [-1674.254] (-1677.013) -- 0:07:32
568000 -- (-1669.160) (-1677.278) [-1672.824] (-1691.076) * (-1681.440) (-1683.794) (-1680.146) [-1676.362] -- 0:07:31
569000 -- (-1688.623) (-1667.943) (-1677.854) [-1677.945] * (-1673.462) (-1681.059) (-1683.876) [-1686.865] -- 0:07:29
570000 -- (-1678.279) (-1685.480) (-1677.753) [-1672.426] * (-1678.558) (-1678.530) [-1672.433] (-1680.205) -- 0:07:28
Average standard deviation of split frequencies: 0.009385
571000 -- (-1676.692) [-1677.469] (-1690.580) (-1674.893) * [-1677.016] (-1672.686) (-1688.613) (-1694.542) -- 0:07:27
572000 -- [-1670.741] (-1675.911) (-1682.566) (-1683.857) * (-1676.605) [-1672.727] (-1678.691) (-1683.571) -- 0:07:26
573000 -- (-1685.885) (-1689.397) [-1677.838] (-1676.505) * (-1674.591) (-1681.030) (-1690.208) [-1671.120] -- 0:07:25
574000 -- (-1686.870) (-1684.681) (-1666.943) [-1667.152] * (-1678.178) [-1672.747] (-1693.046) (-1670.801) -- 0:07:24
575000 -- (-1684.109) (-1675.737) (-1674.211) [-1669.567] * (-1676.019) [-1667.458] (-1690.666) (-1670.785) -- 0:07:23
Average standard deviation of split frequencies: 0.009316
576000 -- [-1673.502] (-1680.591) (-1681.989) (-1687.923) * (-1673.400) (-1680.671) (-1687.406) [-1671.536] -- 0:07:23
577000 -- (-1670.597) (-1688.318) [-1679.271] (-1671.292) * (-1674.540) (-1680.814) [-1684.936] (-1677.825) -- 0:07:22
578000 -- [-1681.864] (-1679.253) (-1683.555) (-1692.723) * (-1686.912) (-1683.588) (-1680.716) [-1673.283] -- 0:07:20
579000 -- (-1677.515) [-1674.966] (-1674.984) (-1670.833) * (-1688.701) (-1666.534) (-1683.821) [-1678.207] -- 0:07:19
580000 -- (-1702.625) [-1670.776] (-1682.376) (-1672.652) * [-1679.712] (-1671.096) (-1675.583) (-1701.450) -- 0:07:18
Average standard deviation of split frequencies: 0.009034
581000 -- (-1676.282) (-1669.798) (-1670.345) [-1676.866] * [-1673.338] (-1687.477) (-1673.750) (-1700.288) -- 0:07:17
582000 -- (-1674.214) (-1685.205) [-1676.424] (-1693.439) * (-1674.407) (-1685.967) [-1672.990] (-1676.448) -- 0:07:16
583000 -- [-1674.417] (-1683.777) (-1689.602) (-1680.780) * (-1675.417) (-1676.657) (-1677.581) [-1670.848] -- 0:07:15
584000 -- (-1678.794) (-1682.953) [-1683.003] (-1677.414) * [-1666.480] (-1678.667) (-1689.788) (-1671.227) -- 0:07:14
585000 -- (-1700.539) (-1675.456) (-1676.051) [-1675.713] * (-1673.218) [-1677.312] (-1687.761) (-1682.683) -- 0:07:13
Average standard deviation of split frequencies: 0.008832
586000 -- (-1675.060) (-1674.821) (-1686.163) [-1678.310] * (-1683.616) (-1681.674) (-1688.158) [-1677.544] -- 0:07:12
587000 -- (-1668.612) (-1687.010) [-1670.127] (-1678.760) * (-1678.353) [-1672.330] (-1688.925) (-1672.169) -- 0:07:11
588000 -- (-1689.705) [-1664.095] (-1700.859) (-1666.224) * (-1674.147) [-1669.586] (-1682.132) (-1671.061) -- 0:07:10
589000 -- [-1669.245] (-1674.497) (-1672.383) (-1678.855) * (-1690.478) (-1680.490) [-1675.171] (-1674.829) -- 0:07:09
590000 -- (-1681.671) (-1686.750) (-1669.522) [-1669.871] * (-1683.512) (-1679.264) [-1677.050] (-1665.611) -- 0:07:08
Average standard deviation of split frequencies: 0.008470
591000 -- (-1679.548) [-1679.747] (-1682.545) (-1685.661) * (-1680.557) (-1689.901) (-1675.547) [-1668.633] -- 0:07:06
592000 -- (-1675.428) (-1670.837) (-1681.290) [-1672.338] * (-1684.738) (-1683.438) [-1675.749] (-1686.022) -- 0:07:05
593000 -- [-1676.699] (-1676.643) (-1681.030) (-1670.071) * (-1678.605) (-1688.041) [-1676.776] (-1678.414) -- 0:07:04
594000 -- (-1681.840) (-1677.650) (-1681.336) [-1693.106] * [-1669.846] (-1681.920) (-1685.301) (-1683.210) -- 0:07:03
595000 -- (-1682.134) (-1680.116) (-1675.053) [-1675.241] * [-1675.986] (-1685.755) (-1665.802) (-1671.877) -- 0:07:02
Average standard deviation of split frequencies: 0.008652
596000 -- (-1692.297) (-1686.326) [-1669.209] (-1670.102) * (-1682.688) (-1676.149) [-1676.158] (-1671.848) -- 0:07:01
597000 -- (-1697.356) (-1695.082) (-1673.278) [-1674.093] * (-1687.023) (-1680.109) [-1683.560] (-1688.514) -- 0:07:00
598000 -- (-1677.019) [-1676.695] (-1672.002) (-1683.936) * (-1692.783) (-1671.991) [-1665.316] (-1660.889) -- 0:06:59
599000 -- (-1680.495) (-1670.835) (-1690.848) [-1670.594] * (-1690.801) [-1685.642] (-1681.477) (-1678.928) -- 0:06:58
600000 -- (-1676.236) (-1668.297) (-1674.898) [-1668.191] * (-1680.151) [-1667.217] (-1680.105) (-1680.612) -- 0:06:57
Average standard deviation of split frequencies: 0.008862
601000 -- [-1674.590] (-1665.475) (-1676.387) (-1665.286) * [-1677.140] (-1682.942) (-1676.472) (-1677.016) -- 0:06:56
602000 -- (-1699.714) (-1687.413) [-1663.725] (-1677.951) * [-1675.304] (-1677.754) (-1685.253) (-1683.871) -- 0:06:55
603000 -- [-1678.458] (-1676.896) (-1667.831) (-1684.251) * (-1686.914) [-1673.661] (-1679.163) (-1676.026) -- 0:06:54
604000 -- (-1684.721) (-1680.939) (-1676.216) [-1679.109] * (-1686.197) (-1673.650) (-1679.663) [-1676.848] -- 0:06:53
605000 -- (-1681.215) (-1685.862) (-1694.023) [-1677.637] * (-1673.258) (-1686.446) [-1672.942] (-1676.885) -- 0:06:51
Average standard deviation of split frequencies: 0.009254
606000 -- [-1675.236] (-1682.776) (-1670.584) (-1685.566) * (-1674.522) [-1670.909] (-1696.788) (-1668.327) -- 0:06:50
607000 -- (-1683.037) (-1699.298) [-1668.695] (-1686.175) * [-1669.017] (-1675.250) (-1669.670) (-1683.665) -- 0:06:50
608000 -- [-1670.429] (-1679.956) (-1683.462) (-1673.718) * (-1680.619) [-1676.185] (-1683.340) (-1679.887) -- 0:06:49
609000 -- (-1680.111) (-1678.113) (-1689.696) [-1684.230] * [-1667.402] (-1676.162) (-1687.837) (-1668.538) -- 0:06:48
610000 -- (-1677.466) (-1684.156) [-1677.064] (-1685.637) * (-1694.638) (-1687.290) [-1672.315] (-1671.062) -- 0:06:47
Average standard deviation of split frequencies: 0.008926
611000 -- (-1685.934) [-1675.490] (-1691.692) (-1685.118) * (-1665.298) [-1674.733] (-1676.075) (-1686.495) -- 0:06:46
612000 -- [-1669.822] (-1668.272) (-1689.736) (-1679.159) * (-1686.304) [-1679.984] (-1684.588) (-1674.105) -- 0:06:45
613000 -- (-1662.831) (-1676.175) (-1679.728) [-1682.796] * (-1681.973) [-1676.022] (-1686.265) (-1672.748) -- 0:06:44
614000 -- (-1671.375) [-1669.204] (-1670.696) (-1682.809) * (-1682.106) [-1684.363] (-1693.259) (-1667.781) -- 0:06:42
615000 -- (-1673.110) (-1666.678) (-1683.374) [-1677.829] * (-1681.916) [-1679.973] (-1678.402) (-1675.481) -- 0:06:41
Average standard deviation of split frequencies: 0.009119
616000 -- (-1691.558) [-1675.034] (-1682.550) (-1675.586) * (-1683.887) [-1673.420] (-1681.180) (-1681.458) -- 0:06:40
617000 -- (-1687.612) (-1687.559) [-1677.401] (-1673.716) * [-1681.500] (-1680.719) (-1677.601) (-1675.634) -- 0:06:39
618000 -- (-1682.729) [-1672.952] (-1671.238) (-1673.578) * (-1677.609) [-1682.080] (-1682.569) (-1667.146) -- 0:06:38
619000 -- (-1680.012) [-1668.965] (-1675.101) (-1681.981) * (-1672.524) (-1683.302) [-1671.032] (-1665.023) -- 0:06:37
620000 -- [-1672.185] (-1677.472) (-1671.345) (-1697.041) * (-1691.714) [-1679.819] (-1681.214) (-1677.680) -- 0:06:36
Average standard deviation of split frequencies: 0.009037
621000 -- (-1676.496) (-1687.534) (-1678.326) [-1692.544] * (-1680.719) (-1684.458) [-1668.635] (-1677.341) -- 0:06:35
622000 -- (-1684.535) [-1671.712] (-1690.582) (-1670.736) * (-1696.181) (-1697.854) (-1668.246) [-1674.417] -- 0:06:34
623000 -- (-1684.557) (-1681.555) (-1682.235) [-1677.741] * (-1679.910) (-1687.477) [-1675.992] (-1675.487) -- 0:06:33
624000 -- (-1679.934) (-1683.844) [-1662.359] (-1672.619) * (-1671.949) (-1675.288) (-1687.189) [-1674.299] -- 0:06:32
625000 -- (-1679.624) (-1685.302) [-1671.161] (-1670.649) * (-1666.693) (-1685.491) (-1673.785) [-1663.943] -- 0:06:31
Average standard deviation of split frequencies: 0.008591
626000 -- [-1673.283] (-1698.222) (-1673.269) (-1691.723) * (-1675.854) (-1695.348) [-1671.263] (-1678.207) -- 0:06:30
627000 -- [-1683.707] (-1678.931) (-1673.687) (-1688.726) * [-1670.757] (-1673.736) (-1680.289) (-1674.920) -- 0:06:29
628000 -- (-1675.278) [-1679.638] (-1692.464) (-1683.074) * (-1672.071) [-1672.912] (-1693.474) (-1671.554) -- 0:06:27
629000 -- (-1682.355) (-1675.868) (-1675.033) [-1666.081] * [-1683.030] (-1677.892) (-1685.127) (-1680.985) -- 0:06:27
630000 -- [-1686.772] (-1683.333) (-1669.137) (-1687.770) * (-1693.088) (-1673.501) [-1673.862] (-1674.548) -- 0:06:26
Average standard deviation of split frequencies: 0.008359
631000 -- [-1676.587] (-1687.996) (-1683.629) (-1683.878) * (-1692.800) (-1673.056) (-1673.891) [-1684.979] -- 0:06:25
632000 -- [-1668.822] (-1676.378) (-1670.325) (-1679.253) * (-1690.763) (-1682.532) [-1673.448] (-1683.161) -- 0:06:24
633000 -- [-1665.274] (-1691.809) (-1694.956) (-1679.990) * (-1680.041) [-1671.608] (-1674.879) (-1688.532) -- 0:06:23
634000 -- [-1669.935] (-1695.834) (-1681.366) (-1677.449) * (-1683.032) [-1687.045] (-1673.917) (-1691.712) -- 0:06:22
635000 -- [-1673.997] (-1670.637) (-1688.719) (-1670.288) * (-1679.105) [-1679.429] (-1685.021) (-1685.494) -- 0:06:21
Average standard deviation of split frequencies: 0.008616
636000 -- (-1684.316) (-1683.796) (-1676.205) [-1669.880] * (-1679.424) (-1684.711) [-1675.853] (-1670.801) -- 0:06:20
637000 -- (-1683.931) (-1681.218) (-1670.851) [-1662.975] * [-1665.557] (-1669.776) (-1669.301) (-1681.454) -- 0:06:18
638000 -- (-1691.939) (-1677.114) (-1687.012) [-1672.259] * (-1674.387) (-1674.629) [-1672.449] (-1680.554) -- 0:06:17
639000 -- (-1697.863) [-1670.026] (-1680.705) (-1671.300) * (-1684.812) (-1668.959) (-1675.295) [-1666.776] -- 0:06:16
640000 -- (-1677.107) (-1677.266) (-1686.265) [-1667.930] * [-1673.439] (-1674.370) (-1683.477) (-1676.820) -- 0:06:15
Average standard deviation of split frequencies: 0.008906
641000 -- (-1663.159) [-1669.894] (-1681.528) (-1670.069) * (-1677.901) (-1674.118) (-1672.333) [-1670.223] -- 0:06:14
642000 -- (-1678.183) (-1688.383) (-1669.219) [-1672.491] * (-1672.573) [-1670.426] (-1696.286) (-1685.213) -- 0:06:13
643000 -- (-1678.082) [-1677.474] (-1674.777) (-1678.695) * (-1690.880) (-1682.601) (-1675.589) [-1673.033] -- 0:06:12
644000 -- (-1677.375) (-1665.289) (-1674.319) [-1669.951] * (-1676.672) (-1678.054) (-1678.056) [-1676.472] -- 0:06:11
645000 -- (-1673.376) (-1673.546) [-1670.095] (-1683.764) * [-1672.788] (-1675.110) (-1691.887) (-1674.821) -- 0:06:10
Average standard deviation of split frequencies: 0.008635
646000 -- (-1675.658) (-1690.666) (-1675.153) [-1671.310] * (-1671.715) (-1682.832) (-1682.400) [-1670.844] -- 0:06:09
647000 -- [-1673.377] (-1691.711) (-1686.863) (-1682.635) * [-1669.226] (-1680.287) (-1677.124) (-1675.589) -- 0:06:08
648000 -- (-1677.439) (-1689.402) [-1675.089] (-1677.413) * (-1691.008) [-1674.064] (-1688.792) (-1672.125) -- 0:06:07
649000 -- (-1683.640) (-1696.255) (-1669.998) [-1670.186] * (-1678.785) [-1676.756] (-1675.125) (-1699.177) -- 0:06:06
650000 -- [-1670.170] (-1687.830) (-1681.156) (-1677.288) * (-1670.519) (-1694.961) (-1679.328) [-1672.210] -- 0:06:05
Average standard deviation of split frequencies: 0.008443
651000 -- [-1665.450] (-1673.819) (-1673.588) (-1682.271) * (-1671.272) (-1674.880) (-1685.823) [-1669.494] -- 0:06:04
652000 -- (-1675.931) [-1675.731] (-1670.526) (-1669.252) * (-1695.246) (-1686.910) (-1677.983) [-1676.041] -- 0:06:02
653000 -- [-1671.119] (-1676.486) (-1672.014) (-1688.493) * [-1680.643] (-1684.706) (-1675.031) (-1684.038) -- 0:06:01
654000 -- (-1677.699) (-1673.707) (-1680.886) [-1674.893] * [-1676.738] (-1695.411) (-1687.130) (-1670.311) -- 0:06:00
655000 -- (-1681.001) (-1671.211) (-1678.436) [-1676.343] * (-1697.518) (-1678.559) [-1669.167] (-1690.924) -- 0:05:59
Average standard deviation of split frequencies: 0.008155
656000 -- (-1672.580) [-1681.876] (-1680.807) (-1680.420) * (-1681.120) [-1672.333] (-1682.959) (-1685.169) -- 0:05:58
657000 -- [-1673.058] (-1676.284) (-1684.399) (-1661.675) * [-1684.365] (-1679.209) (-1681.870) (-1682.454) -- 0:05:57
658000 -- (-1686.674) (-1669.250) (-1678.561) [-1674.205] * (-1678.963) (-1675.584) (-1685.054) [-1659.726] -- 0:05:56
659000 -- (-1691.134) (-1671.746) (-1679.926) [-1677.311] * (-1685.107) (-1670.698) (-1694.048) [-1672.700] -- 0:05:55
660000 -- (-1689.051) (-1671.164) [-1679.949] (-1674.735) * [-1677.946] (-1680.439) (-1674.762) (-1680.622) -- 0:05:54
Average standard deviation of split frequencies: 0.008081
661000 -- (-1677.197) [-1678.126] (-1683.946) (-1673.802) * (-1676.939) (-1681.315) (-1685.293) [-1674.347] -- 0:05:53
662000 -- [-1671.461] (-1664.988) (-1685.651) (-1670.743) * [-1678.235] (-1681.274) (-1676.947) (-1681.244) -- 0:05:52
663000 -- (-1676.392) (-1690.428) [-1692.781] (-1677.291) * (-1688.724) [-1666.780] (-1681.600) (-1685.992) -- 0:05:51
664000 -- [-1682.349] (-1684.778) (-1680.654) (-1683.308) * (-1682.894) [-1667.134] (-1685.791) (-1665.373) -- 0:05:50
665000 -- [-1678.144] (-1690.349) (-1673.030) (-1688.138) * (-1681.895) (-1665.102) (-1681.455) [-1672.936] -- 0:05:49
Average standard deviation of split frequencies: 0.008263
666000 -- (-1671.547) (-1677.549) (-1672.066) [-1680.382] * (-1702.324) (-1672.231) (-1683.733) [-1678.587] -- 0:05:48
667000 -- (-1679.634) [-1683.775] (-1678.048) (-1683.955) * (-1679.034) (-1674.296) (-1680.633) [-1678.496] -- 0:05:47
668000 -- (-1677.627) (-1673.302) (-1675.643) [-1677.119] * (-1704.898) (-1687.669) [-1674.441] (-1677.025) -- 0:05:46
669000 -- (-1677.829) (-1671.349) [-1685.572] (-1677.957) * (-1678.604) (-1684.407) [-1670.119] (-1679.786) -- 0:05:45
670000 -- [-1672.238] (-1671.788) (-1678.875) (-1678.272) * (-1675.875) (-1682.071) [-1670.301] (-1683.506) -- 0:05:44
Average standard deviation of split frequencies: 0.008282
671000 -- (-1673.235) [-1662.469] (-1684.943) (-1672.864) * (-1677.042) (-1669.775) (-1689.814) [-1682.209] -- 0:05:43
672000 -- [-1668.319] (-1676.559) (-1674.114) (-1681.432) * (-1695.103) (-1678.497) [-1669.193] (-1676.901) -- 0:05:42
673000 -- [-1663.208] (-1697.770) (-1680.899) (-1672.547) * (-1675.795) [-1672.178] (-1678.017) (-1675.348) -- 0:05:41
674000 -- (-1675.220) (-1684.294) (-1688.426) [-1678.214] * (-1680.606) [-1675.295] (-1696.019) (-1684.780) -- 0:05:40
675000 -- (-1685.738) (-1695.982) [-1677.055] (-1682.169) * (-1672.876) (-1678.587) (-1672.392) [-1674.278] -- 0:05:38
Average standard deviation of split frequencies: 0.008126
676000 -- (-1684.407) (-1691.631) (-1676.766) [-1676.894] * (-1678.361) [-1669.885] (-1679.558) (-1677.787) -- 0:05:37
677000 -- (-1685.888) (-1687.503) (-1690.221) [-1662.115] * (-1688.246) [-1667.418] (-1676.054) (-1678.542) -- 0:05:36
678000 -- (-1688.870) (-1686.805) (-1670.916) [-1674.151] * (-1684.347) (-1674.545) [-1672.179] (-1678.268) -- 0:05:35
679000 -- (-1672.137) (-1672.891) [-1677.741] (-1678.802) * [-1668.119] (-1676.034) (-1683.684) (-1674.222) -- 0:05:34
680000 -- (-1680.397) [-1665.740] (-1667.635) (-1680.864) * (-1671.026) [-1660.873] (-1681.344) (-1688.111) -- 0:05:33
Average standard deviation of split frequencies: 0.007934
681000 -- (-1673.174) (-1684.350) [-1675.647] (-1667.784) * [-1675.462] (-1681.448) (-1686.292) (-1679.386) -- 0:05:32
682000 -- (-1685.081) (-1680.346) (-1674.055) [-1669.244] * (-1681.912) (-1677.762) [-1690.328] (-1667.546) -- 0:05:31
683000 -- (-1672.965) [-1660.982] (-1678.490) (-1670.365) * (-1676.514) (-1683.463) [-1668.401] (-1677.960) -- 0:05:30
684000 -- [-1674.861] (-1669.438) (-1690.554) (-1684.093) * (-1667.302) (-1686.770) [-1668.538] (-1683.457) -- 0:05:29
685000 -- (-1679.337) (-1683.381) (-1677.529) [-1675.340] * [-1681.382] (-1676.411) (-1670.448) (-1680.022) -- 0:05:28
Average standard deviation of split frequencies: 0.008037
686000 -- (-1666.363) (-1679.266) (-1675.301) [-1670.279] * (-1684.372) (-1678.331) (-1681.453) [-1679.055] -- 0:05:27
687000 -- (-1670.117) [-1676.646] (-1684.585) (-1675.825) * (-1686.821) (-1697.224) (-1677.395) [-1669.894] -- 0:05:26
688000 -- (-1671.060) (-1681.469) (-1670.810) [-1664.398] * (-1669.586) [-1667.789] (-1680.977) (-1674.293) -- 0:05:25
689000 -- (-1686.875) [-1674.193] (-1672.905) (-1665.804) * (-1672.816) [-1666.999] (-1685.391) (-1686.117) -- 0:05:24
690000 -- (-1679.122) (-1674.958) [-1675.444] (-1678.617) * [-1676.478] (-1677.506) (-1674.322) (-1683.713) -- 0:05:23
Average standard deviation of split frequencies: 0.008309
691000 -- (-1685.096) [-1684.847] (-1687.379) (-1678.936) * [-1666.771] (-1677.317) (-1677.992) (-1676.402) -- 0:05:21
692000 -- (-1678.781) (-1691.760) (-1684.771) [-1672.784] * (-1683.468) [-1681.173] (-1680.276) (-1683.678) -- 0:05:20
693000 -- (-1679.837) (-1675.567) (-1680.638) [-1681.512] * [-1677.916] (-1678.539) (-1687.796) (-1674.953) -- 0:05:19
694000 -- (-1668.492) (-1686.245) (-1682.770) [-1678.234] * (-1686.301) (-1679.760) (-1690.238) [-1687.577] -- 0:05:18
695000 -- (-1674.381) [-1672.469] (-1683.949) (-1679.436) * (-1676.879) (-1688.096) (-1683.324) [-1662.385] -- 0:05:18
Average standard deviation of split frequencies: 0.008218
696000 -- (-1684.888) (-1683.395) [-1667.898] (-1685.648) * [-1674.481] (-1674.630) (-1676.912) (-1661.842) -- 0:05:17
697000 -- (-1684.136) [-1668.092] (-1671.082) (-1669.377) * (-1681.836) (-1670.906) (-1672.460) [-1675.045] -- 0:05:16
698000 -- (-1678.855) [-1673.972] (-1673.877) (-1672.394) * (-1670.655) (-1681.035) [-1671.410] (-1671.060) -- 0:05:14
699000 -- (-1680.834) [-1679.401] (-1676.162) (-1682.206) * [-1675.317] (-1673.892) (-1689.665) (-1681.343) -- 0:05:13
700000 -- [-1674.248] (-1679.396) (-1673.306) (-1671.089) * (-1676.726) (-1674.978) (-1671.138) [-1673.815] -- 0:05:12
Average standard deviation of split frequencies: 0.007810
701000 -- (-1676.160) [-1673.935] (-1678.816) (-1675.224) * (-1674.109) (-1682.438) [-1672.558] (-1668.257) -- 0:05:11
702000 -- (-1676.457) (-1672.654) [-1666.162] (-1683.031) * [-1668.041] (-1686.018) (-1677.473) (-1671.181) -- 0:05:10
703000 -- (-1671.880) [-1669.644] (-1666.688) (-1694.079) * [-1676.844] (-1682.953) (-1690.775) (-1689.899) -- 0:05:09
704000 -- (-1666.593) (-1682.321) [-1668.422] (-1694.939) * [-1671.759] (-1670.897) (-1672.856) (-1678.311) -- 0:05:08
705000 -- [-1671.705] (-1677.487) (-1682.322) (-1683.601) * (-1699.992) (-1683.268) (-1670.650) [-1677.694] -- 0:05:07
Average standard deviation of split frequencies: 0.007664
706000 -- [-1666.652] (-1673.440) (-1676.290) (-1699.149) * [-1677.186] (-1690.133) (-1682.167) (-1678.159) -- 0:05:06
707000 -- (-1676.326) (-1683.937) (-1676.894) [-1674.644] * [-1666.156] (-1685.711) (-1692.500) (-1688.894) -- 0:05:05
708000 -- (-1684.663) (-1695.445) (-1674.921) [-1677.024] * (-1667.125) (-1683.369) [-1685.520] (-1672.360) -- 0:05:04
709000 -- (-1682.002) (-1681.012) [-1677.006] (-1677.893) * (-1672.910) (-1691.791) (-1701.884) [-1684.057] -- 0:05:03
710000 -- (-1684.930) (-1678.992) (-1684.710) [-1674.875] * (-1690.846) (-1674.349) (-1678.037) [-1673.748] -- 0:05:02
Average standard deviation of split frequencies: 0.008104
711000 -- (-1689.858) [-1671.884] (-1675.496) (-1665.606) * [-1687.794] (-1676.007) (-1683.704) (-1685.692) -- 0:05:01
712000 -- (-1689.025) (-1672.216) (-1678.369) [-1669.427] * (-1690.822) (-1683.512) [-1672.810] (-1675.010) -- 0:05:00
713000 -- (-1673.109) [-1666.049] (-1674.576) (-1660.787) * (-1670.676) (-1678.549) [-1679.164] (-1678.485) -- 0:04:59
714000 -- [-1665.128] (-1678.583) (-1688.975) (-1685.344) * [-1668.131] (-1680.211) (-1685.952) (-1682.156) -- 0:04:58
715000 -- (-1677.082) [-1676.894] (-1677.988) (-1679.287) * (-1676.746) (-1675.816) (-1683.682) [-1684.331] -- 0:04:57
Average standard deviation of split frequencies: 0.007800
716000 -- (-1684.301) [-1667.818] (-1667.697) (-1682.561) * (-1682.411) (-1670.841) [-1675.832] (-1688.174) -- 0:04:56
717000 -- (-1684.602) (-1675.417) (-1680.427) [-1688.437] * [-1679.129] (-1672.952) (-1677.681) (-1689.693) -- 0:04:55
718000 -- (-1686.977) (-1678.715) (-1675.974) [-1660.979] * [-1672.720] (-1675.149) (-1680.032) (-1677.673) -- 0:04:54
719000 -- (-1684.839) (-1679.756) [-1675.291] (-1666.564) * (-1691.706) [-1664.301] (-1684.803) (-1667.944) -- 0:04:53
720000 -- (-1695.466) (-1680.372) [-1670.347] (-1674.732) * (-1667.612) (-1670.483) (-1691.103) [-1673.468] -- 0:04:52
Average standard deviation of split frequencies: 0.007679
721000 -- (-1682.943) [-1668.861] (-1672.262) (-1677.631) * (-1682.162) (-1691.724) (-1684.302) [-1674.255] -- 0:04:50
722000 -- (-1697.718) (-1682.973) (-1673.094) [-1679.034] * (-1679.921) [-1673.762] (-1684.389) (-1676.956) -- 0:04:49
723000 -- [-1678.854] (-1684.018) (-1683.073) (-1667.162) * (-1675.884) [-1665.273] (-1698.061) (-1670.389) -- 0:04:48
724000 -- (-1674.651) (-1684.560) (-1677.696) [-1671.989] * [-1671.570] (-1683.028) (-1691.993) (-1684.182) -- 0:04:47
725000 -- (-1688.122) (-1681.589) (-1682.807) [-1677.173] * [-1668.272] (-1676.766) (-1671.790) (-1686.445) -- 0:04:46
Average standard deviation of split frequencies: 0.007695
726000 -- [-1672.870] (-1671.316) (-1681.043) (-1685.036) * (-1671.120) [-1667.344] (-1669.229) (-1675.539) -- 0:04:45
727000 -- (-1683.368) (-1675.528) (-1677.037) [-1682.379] * (-1669.349) [-1670.273] (-1682.853) (-1685.982) -- 0:04:44
728000 -- (-1686.989) [-1663.620] (-1673.126) (-1681.211) * [-1672.352] (-1689.184) (-1674.303) (-1681.896) -- 0:04:43
729000 -- [-1678.296] (-1673.665) (-1689.592) (-1677.000) * (-1673.561) (-1683.473) [-1672.203] (-1667.381) -- 0:04:42
730000 -- (-1682.423) (-1677.817) (-1690.872) [-1671.255] * (-1681.105) (-1674.736) (-1683.478) [-1673.348] -- 0:04:41
Average standard deviation of split frequencies: 0.007632
731000 -- (-1696.897) [-1686.471] (-1689.459) (-1685.821) * (-1687.405) (-1684.889) (-1687.293) [-1676.984] -- 0:04:40
732000 -- (-1684.468) (-1676.889) (-1687.209) [-1671.484] * (-1670.499) (-1689.229) [-1673.378] (-1689.347) -- 0:04:39
733000 -- [-1679.381] (-1669.910) (-1686.684) (-1682.138) * (-1682.762) (-1678.492) [-1661.556] (-1667.854) -- 0:04:38
734000 -- (-1694.734) [-1677.894] (-1688.229) (-1684.165) * (-1667.894) (-1670.712) (-1681.317) [-1667.393] -- 0:04:37
735000 -- (-1682.289) (-1680.087) (-1685.913) [-1676.910] * (-1689.060) (-1697.264) (-1685.070) [-1674.359] -- 0:04:36
Average standard deviation of split frequencies: 0.007413
736000 -- (-1669.865) [-1675.646] (-1662.773) (-1695.302) * [-1671.753] (-1684.795) (-1687.568) (-1676.029) -- 0:04:35
737000 -- [-1674.780] (-1679.335) (-1687.787) (-1704.484) * [-1672.867] (-1680.060) (-1680.683) (-1669.043) -- 0:04:34
738000 -- (-1675.027) [-1669.850] (-1682.595) (-1673.547) * [-1674.734] (-1690.332) (-1686.611) (-1674.468) -- 0:04:33
739000 -- (-1684.937) (-1681.911) (-1685.564) [-1674.906] * [-1680.029] (-1682.391) (-1680.808) (-1689.805) -- 0:04:31
740000 -- (-1681.129) [-1671.584] (-1659.843) (-1688.165) * [-1668.760] (-1681.190) (-1675.834) (-1689.822) -- 0:04:30
Average standard deviation of split frequencies: 0.007421
741000 -- (-1671.301) (-1675.842) [-1669.379] (-1680.033) * (-1674.848) (-1668.078) [-1691.173] (-1675.949) -- 0:04:29
742000 -- (-1680.795) (-1679.707) (-1678.674) [-1673.552] * (-1694.351) (-1689.654) [-1671.095] (-1678.836) -- 0:04:28
743000 -- (-1682.084) (-1694.126) [-1666.208] (-1670.873) * (-1685.205) (-1683.700) (-1684.102) [-1674.436] -- 0:04:27
744000 -- (-1682.097) (-1670.869) [-1669.281] (-1688.269) * (-1672.947) (-1684.657) (-1676.210) [-1680.779] -- 0:04:26
745000 -- (-1683.831) [-1666.151] (-1668.857) (-1676.373) * (-1681.600) (-1668.840) (-1681.347) [-1664.165] -- 0:04:25
Average standard deviation of split frequencies: 0.007190
746000 -- (-1679.079) [-1672.611] (-1694.822) (-1693.020) * [-1666.866] (-1675.788) (-1677.490) (-1675.943) -- 0:04:24
747000 -- (-1686.485) (-1684.148) (-1679.160) [-1673.861] * [-1676.332] (-1681.914) (-1679.994) (-1679.481) -- 0:04:23
748000 -- (-1684.285) (-1678.013) [-1680.886] (-1669.792) * (-1677.991) (-1674.099) [-1667.336] (-1673.707) -- 0:04:22
749000 -- (-1691.323) (-1682.962) (-1686.771) [-1676.770] * (-1682.791) [-1666.617] (-1684.036) (-1675.788) -- 0:04:21
750000 -- [-1676.670] (-1684.721) (-1688.160) (-1669.196) * (-1683.194) [-1669.587] (-1668.130) (-1682.735) -- 0:04:20
Average standard deviation of split frequencies: 0.007165
751000 -- [-1666.197] (-1678.305) (-1683.263) (-1683.168) * (-1684.520) (-1676.301) (-1689.611) [-1672.141] -- 0:04:19
752000 -- (-1675.006) (-1687.903) (-1675.877) [-1671.469] * [-1666.658] (-1682.623) (-1672.939) (-1689.910) -- 0:04:18
753000 -- (-1682.500) (-1685.209) [-1677.775] (-1680.851) * (-1679.983) (-1688.163) [-1672.768] (-1676.948) -- 0:04:17
754000 -- (-1679.910) (-1684.168) [-1665.846] (-1672.028) * (-1686.309) [-1669.400] (-1673.389) (-1679.296) -- 0:04:16
755000 -- [-1671.669] (-1673.223) (-1676.141) (-1696.453) * [-1672.051] (-1686.849) (-1675.791) (-1679.392) -- 0:04:15
Average standard deviation of split frequencies: 0.007275
756000 -- [-1672.587] (-1669.962) (-1674.212) (-1677.871) * [-1671.178] (-1692.916) (-1681.343) (-1678.351) -- 0:04:14
757000 -- (-1675.185) [-1662.237] (-1666.455) (-1679.540) * (-1674.471) (-1688.348) [-1676.354] (-1685.235) -- 0:04:13
758000 -- (-1670.865) (-1677.521) [-1670.904] (-1692.342) * (-1669.312) (-1689.637) [-1671.281] (-1675.450) -- 0:04:12
759000 -- (-1676.832) (-1696.641) [-1674.585] (-1687.111) * [-1670.990] (-1684.525) (-1696.435) (-1667.072) -- 0:04:11
760000 -- (-1687.619) (-1684.424) (-1679.273) [-1671.644] * [-1678.127] (-1683.838) (-1686.714) (-1681.700) -- 0:04:10
Average standard deviation of split frequencies: 0.007313
761000 -- (-1673.522) (-1691.301) [-1660.912] (-1682.138) * (-1679.615) (-1690.636) [-1669.268] (-1685.560) -- 0:04:09
762000 -- (-1674.729) (-1684.256) [-1673.214] (-1684.089) * (-1676.586) [-1665.004] (-1687.726) (-1675.466) -- 0:04:07
763000 -- (-1683.603) (-1691.247) [-1668.161] (-1671.469) * (-1683.261) (-1670.688) (-1706.686) [-1681.553] -- 0:04:06
764000 -- (-1672.983) (-1685.885) [-1661.845] (-1690.559) * [-1663.646] (-1672.403) (-1688.378) (-1680.192) -- 0:04:05
765000 -- (-1677.613) [-1680.091] (-1681.404) (-1682.044) * (-1667.753) [-1670.960] (-1672.341) (-1683.389) -- 0:04:04
Average standard deviation of split frequencies: 0.006953
766000 -- (-1698.501) (-1680.833) (-1679.025) [-1673.998] * [-1668.932] (-1687.281) (-1669.653) (-1688.991) -- 0:04:03
767000 -- (-1676.243) (-1682.530) [-1682.996] (-1674.948) * (-1665.323) (-1687.482) [-1673.357] (-1672.689) -- 0:04:02
768000 -- (-1679.266) (-1682.410) (-1668.747) [-1674.901] * (-1680.640) (-1673.586) (-1695.799) [-1671.854] -- 0:04:01
769000 -- (-1679.615) (-1682.467) (-1684.114) [-1671.147] * (-1683.696) (-1672.733) (-1680.367) [-1677.554] -- 0:04:00
770000 -- [-1672.373] (-1676.579) (-1675.165) (-1694.533) * (-1676.822) (-1684.399) (-1696.326) [-1679.348] -- 0:03:59
Average standard deviation of split frequencies: 0.006989
771000 -- (-1685.700) (-1679.071) [-1675.477] (-1685.174) * (-1672.178) [-1674.244] (-1688.733) (-1676.143) -- 0:03:58
772000 -- [-1687.669] (-1681.642) (-1676.203) (-1686.065) * (-1683.640) [-1669.509] (-1678.550) (-1665.429) -- 0:03:57
773000 -- [-1668.405] (-1672.602) (-1673.805) (-1673.562) * [-1676.421] (-1669.699) (-1683.705) (-1678.159) -- 0:03:56
774000 -- (-1670.356) (-1683.356) [-1681.629] (-1683.230) * [-1672.487] (-1674.062) (-1675.223) (-1679.628) -- 0:03:55
775000 -- (-1675.511) (-1670.994) (-1671.658) [-1661.257] * [-1675.919] (-1680.918) (-1691.089) (-1687.053) -- 0:03:54
Average standard deviation of split frequencies: 0.006841
776000 -- (-1686.049) [-1677.560] (-1681.894) (-1672.079) * (-1682.382) (-1670.138) (-1677.308) [-1665.578] -- 0:03:53
777000 -- (-1684.830) (-1677.840) (-1674.223) [-1664.972] * (-1680.748) [-1668.122] (-1681.653) (-1667.794) -- 0:03:52
778000 -- (-1678.744) [-1674.530] (-1682.411) (-1675.974) * [-1673.558] (-1674.863) (-1668.106) (-1678.152) -- 0:03:51
779000 -- (-1664.132) (-1685.941) [-1671.310] (-1675.089) * (-1681.283) [-1660.141] (-1678.269) (-1693.776) -- 0:03:50
780000 -- (-1672.867) (-1667.019) (-1683.378) [-1671.320] * [-1668.741] (-1682.835) (-1675.195) (-1687.977) -- 0:03:49
Average standard deviation of split frequencies: 0.006830
781000 -- (-1679.560) [-1665.881] (-1681.615) (-1674.178) * [-1667.633] (-1681.501) (-1675.889) (-1673.605) -- 0:03:48
782000 -- (-1689.910) [-1662.607] (-1680.290) (-1658.452) * [-1673.927] (-1684.313) (-1684.928) (-1673.853) -- 0:03:47
783000 -- [-1668.005] (-1679.808) (-1686.745) (-1670.403) * (-1663.988) [-1659.228] (-1676.796) (-1679.382) -- 0:03:46
784000 -- [-1673.817] (-1680.400) (-1684.820) (-1684.238) * (-1670.780) (-1673.558) (-1680.818) [-1668.771] -- 0:03:45
785000 -- [-1660.430] (-1690.444) (-1689.642) (-1666.595) * (-1675.172) (-1672.414) [-1672.580] (-1674.488) -- 0:03:44
Average standard deviation of split frequencies: 0.006757
786000 -- (-1678.112) [-1679.899] (-1685.260) (-1680.906) * (-1677.250) [-1667.425] (-1673.868) (-1697.083) -- 0:03:42
787000 -- (-1673.005) (-1680.338) [-1674.283] (-1681.521) * [-1669.478] (-1678.579) (-1666.661) (-1683.154) -- 0:03:41
788000 -- (-1697.072) (-1679.016) [-1682.684] (-1672.487) * (-1666.528) (-1672.211) [-1686.680] (-1672.154) -- 0:03:40
789000 -- (-1677.155) (-1689.188) [-1686.309] (-1677.795) * (-1682.370) (-1674.703) [-1666.194] (-1701.040) -- 0:03:39
790000 -- (-1682.254) (-1690.536) [-1679.998] (-1680.512) * (-1697.723) [-1674.236] (-1670.936) (-1667.103) -- 0:03:38
Average standard deviation of split frequencies: 0.006572
791000 -- (-1678.678) (-1689.179) (-1672.332) [-1676.314] * (-1675.116) (-1678.151) [-1676.343] (-1673.132) -- 0:03:37
792000 -- (-1668.359) [-1676.175] (-1671.845) (-1671.270) * (-1678.925) (-1694.034) (-1677.240) [-1682.300] -- 0:03:36
793000 -- [-1669.349] (-1674.390) (-1671.838) (-1692.593) * (-1680.367) [-1673.774] (-1673.435) (-1688.521) -- 0:03:35
794000 -- (-1674.651) (-1690.475) (-1675.104) [-1677.425] * (-1671.223) [-1678.060] (-1673.751) (-1695.811) -- 0:03:34
795000 -- (-1678.562) [-1675.306] (-1676.931) (-1686.397) * (-1677.807) (-1684.528) (-1674.770) [-1676.134] -- 0:03:33
Average standard deviation of split frequencies: 0.006597
796000 -- (-1683.210) (-1669.629) (-1666.452) [-1669.551] * (-1676.685) (-1681.356) [-1677.257] (-1687.152) -- 0:03:32
797000 -- (-1681.372) [-1673.086] (-1681.215) (-1676.712) * (-1680.972) (-1696.907) [-1670.195] (-1679.554) -- 0:03:31
798000 -- [-1672.489] (-1680.622) (-1686.569) (-1695.569) * [-1673.300] (-1679.459) (-1685.410) (-1702.791) -- 0:03:30
799000 -- (-1678.485) (-1683.158) (-1665.044) [-1673.054] * (-1674.168) (-1677.725) [-1673.780] (-1686.100) -- 0:03:29
800000 -- (-1679.605) (-1686.531) (-1686.135) [-1679.821] * (-1685.901) [-1676.125] (-1687.499) (-1684.984) -- 0:03:28
Average standard deviation of split frequencies: 0.006613
801000 -- [-1671.454] (-1693.402) (-1683.434) (-1672.851) * (-1674.196) (-1674.464) (-1689.543) [-1661.826] -- 0:03:27
802000 -- (-1676.942) (-1682.817) [-1672.669] (-1690.483) * [-1671.188] (-1670.729) (-1687.266) (-1664.278) -- 0:03:26
803000 -- (-1686.475) [-1666.802] (-1677.276) (-1679.874) * (-1678.861) [-1671.962] (-1675.832) (-1671.687) -- 0:03:25
804000 -- (-1673.351) [-1671.515] (-1681.070) (-1687.851) * (-1684.083) (-1675.525) (-1675.030) [-1682.700] -- 0:03:24
805000 -- (-1691.400) (-1682.807) (-1670.141) [-1671.451] * (-1680.302) (-1673.815) (-1696.082) [-1670.838] -- 0:03:23
Average standard deviation of split frequencies: 0.006527
806000 -- (-1671.709) [-1665.243] (-1682.530) (-1678.979) * (-1676.115) (-1677.718) (-1678.657) [-1672.114] -- 0:03:22
807000 -- [-1673.108] (-1682.755) (-1680.660) (-1683.285) * (-1680.167) [-1665.821] (-1694.910) (-1673.515) -- 0:03:21
808000 -- [-1672.709] (-1686.270) (-1678.108) (-1681.165) * [-1671.393] (-1681.595) (-1688.579) (-1668.467) -- 0:03:20
809000 -- (-1679.379) (-1676.302) (-1676.475) [-1679.855] * (-1662.014) (-1678.476) (-1690.173) [-1667.666] -- 0:03:19
810000 -- [-1667.605] (-1681.645) (-1672.187) (-1690.230) * (-1678.146) (-1671.552) (-1704.555) [-1666.198] -- 0:03:18
Average standard deviation of split frequencies: 0.006370
811000 -- [-1675.789] (-1674.470) (-1680.396) (-1674.309) * (-1675.699) [-1676.926] (-1679.724) (-1683.605) -- 0:03:17
812000 -- [-1661.570] (-1686.194) (-1667.237) (-1692.280) * (-1676.312) (-1673.917) [-1677.254] (-1680.502) -- 0:03:16
813000 -- (-1683.778) [-1687.931] (-1690.311) (-1676.978) * (-1667.744) [-1678.988] (-1679.283) (-1674.293) -- 0:03:15
814000 -- [-1665.065] (-1674.798) (-1674.658) (-1688.933) * [-1671.981] (-1677.037) (-1688.761) (-1673.327) -- 0:03:13
815000 -- [-1682.164] (-1673.208) (-1675.009) (-1690.977) * [-1674.806] (-1679.657) (-1685.585) (-1674.054) -- 0:03:12
Average standard deviation of split frequencies: 0.006239
816000 -- (-1687.033) (-1671.083) (-1686.229) [-1666.724] * (-1680.018) (-1676.226) (-1680.963) [-1677.475] -- 0:03:11
817000 -- (-1668.899) (-1678.476) (-1685.159) [-1673.971] * [-1682.815] (-1682.025) (-1684.331) (-1671.069) -- 0:03:10
818000 -- (-1686.064) (-1689.208) (-1676.546) [-1670.590] * (-1680.381) [-1682.270] (-1676.448) (-1679.369) -- 0:03:09
819000 -- (-1676.939) (-1685.666) [-1672.127] (-1676.423) * (-1688.572) (-1688.213) [-1669.337] (-1674.430) -- 0:03:08
820000 -- [-1655.093] (-1674.572) (-1703.629) (-1680.204) * (-1685.706) (-1698.275) (-1675.040) [-1676.409] -- 0:03:07
Average standard deviation of split frequencies: 0.006057
821000 -- (-1670.230) (-1681.881) [-1667.918] (-1679.592) * [-1676.832] (-1694.035) (-1674.684) (-1681.765) -- 0:03:06
822000 -- (-1690.169) [-1678.811] (-1679.616) (-1673.472) * [-1673.224] (-1674.499) (-1681.309) (-1682.151) -- 0:03:05
823000 -- [-1669.049] (-1688.080) (-1670.984) (-1694.161) * (-1678.937) [-1676.038] (-1687.169) (-1694.690) -- 0:03:04
824000 -- (-1675.932) (-1691.783) (-1679.203) [-1669.184] * (-1674.121) (-1681.207) [-1678.960] (-1677.326) -- 0:03:03
825000 -- (-1686.039) (-1682.046) (-1674.699) [-1672.180] * (-1688.846) (-1675.465) [-1686.869] (-1704.033) -- 0:03:02
Average standard deviation of split frequencies: 0.005893
826000 -- (-1691.407) (-1673.112) [-1671.987] (-1668.143) * (-1674.192) (-1691.592) (-1674.809) [-1668.054] -- 0:03:01
827000 -- (-1678.299) (-1669.805) [-1677.740] (-1679.743) * [-1672.936] (-1667.355) (-1705.177) (-1680.896) -- 0:03:00
828000 -- [-1679.809] (-1678.345) (-1682.480) (-1680.330) * (-1673.880) [-1670.166] (-1683.756) (-1679.503) -- 0:02:59
829000 -- (-1684.262) [-1665.744] (-1698.649) (-1677.772) * (-1683.847) [-1680.791] (-1677.866) (-1673.403) -- 0:02:58
830000 -- (-1682.052) (-1671.710) (-1695.987) [-1666.625] * (-1669.995) (-1691.546) [-1675.131] (-1678.807) -- 0:02:57
Average standard deviation of split frequencies: 0.005996
831000 -- (-1697.379) [-1658.109] (-1678.053) (-1678.076) * (-1680.330) [-1675.387] (-1673.788) (-1686.358) -- 0:02:56
832000 -- (-1674.730) (-1676.125) (-1684.710) [-1667.751] * (-1688.804) [-1665.644] (-1689.262) (-1693.341) -- 0:02:55
833000 -- [-1680.913] (-1678.349) (-1684.482) (-1675.399) * (-1683.441) (-1673.742) [-1677.640] (-1675.572) -- 0:02:54
834000 -- (-1675.461) [-1674.878] (-1670.251) (-1668.996) * (-1685.239) (-1677.595) (-1682.772) [-1668.519] -- 0:02:53
835000 -- (-1688.711) (-1684.014) [-1668.472] (-1678.058) * (-1676.976) [-1666.891] (-1681.521) (-1672.281) -- 0:02:52
Average standard deviation of split frequencies: 0.005994
836000 -- (-1686.143) (-1675.129) (-1678.237) [-1676.238] * (-1666.968) [-1673.022] (-1692.888) (-1689.082) -- 0:02:51
837000 -- (-1675.873) (-1683.763) [-1681.975] (-1686.672) * (-1671.234) (-1675.214) (-1684.021) [-1667.624] -- 0:02:50
838000 -- [-1670.201] (-1675.500) (-1681.457) (-1693.140) * (-1665.887) [-1676.140] (-1686.719) (-1675.648) -- 0:02:48
839000 -- [-1667.831] (-1696.327) (-1682.499) (-1682.398) * [-1669.785] (-1683.297) (-1671.432) (-1694.977) -- 0:02:47
840000 -- (-1671.868) (-1690.901) (-1700.212) [-1681.492] * (-1678.126) (-1680.304) (-1682.747) [-1674.633] -- 0:02:46
Average standard deviation of split frequencies: 0.006019
841000 -- (-1678.799) [-1679.404] (-1673.743) (-1667.213) * [-1673.522] (-1669.309) (-1676.004) (-1672.782) -- 0:02:45
842000 -- (-1680.381) (-1668.676) [-1670.795] (-1678.815) * (-1679.072) (-1692.148) (-1669.593) [-1678.001] -- 0:02:44
843000 -- (-1669.994) [-1667.719] (-1683.729) (-1670.375) * [-1667.746] (-1682.646) (-1673.355) (-1683.489) -- 0:02:43
844000 -- (-1688.986) (-1676.057) (-1687.461) [-1680.243] * (-1682.974) (-1690.618) (-1669.910) [-1672.739] -- 0:02:42
845000 -- (-1685.438) [-1670.649] (-1674.442) (-1680.742) * (-1677.335) (-1681.833) [-1659.703] (-1677.513) -- 0:02:41
Average standard deviation of split frequencies: 0.005802
846000 -- (-1679.698) (-1675.023) [-1660.616] (-1678.916) * (-1688.883) (-1675.245) (-1691.651) [-1678.811] -- 0:02:40
847000 -- [-1683.462] (-1685.860) (-1689.773) (-1683.187) * (-1668.431) [-1676.965] (-1683.066) (-1680.309) -- 0:02:39
848000 -- [-1678.807] (-1673.344) (-1688.046) (-1677.961) * (-1685.651) (-1673.276) [-1688.246] (-1676.794) -- 0:02:38
849000 -- (-1679.260) (-1671.957) [-1683.364] (-1675.396) * (-1684.495) [-1670.960] (-1687.512) (-1675.397) -- 0:02:37
850000 -- (-1674.822) [-1670.913] (-1675.818) (-1678.379) * (-1677.824) [-1670.974] (-1692.925) (-1684.935) -- 0:02:36
Average standard deviation of split frequencies: 0.005963
851000 -- (-1673.158) (-1677.238) [-1668.271] (-1679.749) * (-1679.509) [-1679.654] (-1679.987) (-1682.229) -- 0:02:35
852000 -- (-1673.942) (-1687.158) (-1675.120) [-1684.071] * [-1677.748] (-1683.893) (-1683.151) (-1665.116) -- 0:02:34
853000 -- (-1676.673) (-1678.810) [-1663.742] (-1683.913) * (-1669.742) (-1680.861) (-1671.723) [-1671.120] -- 0:02:33
854000 -- (-1680.143) (-1686.378) [-1671.592] (-1682.544) * (-1685.380) (-1677.296) [-1672.013] (-1687.899) -- 0:02:32
855000 -- (-1680.341) [-1672.258] (-1683.943) (-1678.847) * (-1673.661) (-1682.282) (-1673.362) [-1676.538] -- 0:02:31
Average standard deviation of split frequencies: 0.005818
856000 -- (-1677.932) (-1677.616) (-1679.486) [-1681.638] * (-1686.377) [-1677.996] (-1672.588) (-1692.855) -- 0:02:30
857000 -- (-1690.175) (-1668.184) (-1674.641) [-1679.393] * (-1672.299) [-1667.201] (-1697.143) (-1691.169) -- 0:02:29
858000 -- (-1684.265) (-1674.744) (-1676.423) [-1671.343] * (-1688.944) [-1676.039] (-1693.696) (-1677.483) -- 0:02:27
859000 -- (-1687.342) (-1674.449) (-1676.835) [-1670.966] * (-1686.968) (-1672.466) [-1675.547] (-1676.893) -- 0:02:27
860000 -- (-1696.991) (-1676.241) (-1674.149) [-1670.378] * (-1684.349) [-1670.584] (-1676.021) (-1688.275) -- 0:02:26
Average standard deviation of split frequencies: 0.006074
861000 -- [-1675.555] (-1671.135) (-1677.417) (-1675.756) * (-1675.280) (-1674.247) (-1683.058) [-1673.932] -- 0:02:24
862000 -- (-1665.292) [-1669.259] (-1675.511) (-1684.767) * (-1693.543) (-1676.985) (-1683.200) [-1669.716] -- 0:02:23
863000 -- (-1662.086) [-1670.288] (-1686.157) (-1669.386) * (-1677.041) (-1690.978) (-1687.388) [-1674.843] -- 0:02:22
864000 -- (-1696.554) [-1677.813] (-1675.368) (-1684.813) * (-1686.127) [-1671.300] (-1672.374) (-1675.247) -- 0:02:21
865000 -- (-1678.941) [-1670.161] (-1684.226) (-1696.739) * (-1676.526) (-1671.759) [-1675.230] (-1691.908) -- 0:02:20
Average standard deviation of split frequencies: 0.006230
866000 -- [-1671.405] (-1676.392) (-1673.008) (-1698.515) * (-1685.374) (-1676.669) (-1674.818) [-1669.140] -- 0:02:19
867000 -- (-1676.652) [-1682.218] (-1674.213) (-1702.238) * (-1676.603) (-1682.809) [-1676.560] (-1684.054) -- 0:02:18
868000 -- (-1674.074) (-1683.449) (-1682.055) [-1674.317] * (-1679.474) (-1689.611) [-1677.257] (-1685.430) -- 0:02:17
869000 -- [-1685.457] (-1676.073) (-1696.862) (-1693.631) * (-1696.322) [-1674.259] (-1685.529) (-1685.419) -- 0:02:16
870000 -- [-1676.663] (-1682.208) (-1684.300) (-1677.876) * (-1680.320) (-1687.793) [-1674.216] (-1685.173) -- 0:02:15
Average standard deviation of split frequencies: 0.006425
871000 -- [-1677.208] (-1682.834) (-1672.694) (-1690.521) * (-1662.994) (-1700.267) (-1684.480) [-1671.347] -- 0:02:14
872000 -- [-1662.647] (-1674.614) (-1678.715) (-1679.305) * [-1670.576] (-1685.765) (-1676.441) (-1680.447) -- 0:02:13
873000 -- (-1674.496) [-1680.572] (-1673.305) (-1683.662) * (-1681.824) (-1674.954) [-1676.140] (-1677.894) -- 0:02:12
874000 -- (-1679.610) (-1683.854) [-1671.695] (-1677.899) * (-1684.904) (-1680.345) [-1686.911] (-1686.906) -- 0:02:11
875000 -- (-1697.079) (-1681.000) (-1673.207) [-1671.735] * [-1677.142] (-1673.914) (-1683.438) (-1684.724) -- 0:02:10
Average standard deviation of split frequencies: 0.006410
876000 -- (-1676.228) (-1666.688) [-1670.245] (-1665.640) * (-1678.577) (-1685.945) [-1672.165] (-1689.964) -- 0:02:09
877000 -- [-1674.413] (-1685.859) (-1689.725) (-1676.181) * (-1680.970) (-1678.462) [-1677.247] (-1676.219) -- 0:02:08
878000 -- (-1667.328) (-1669.537) (-1686.879) [-1675.129] * (-1694.731) [-1669.123] (-1682.668) (-1670.753) -- 0:02:07
879000 -- (-1681.789) (-1673.309) (-1691.168) [-1672.603] * [-1689.180] (-1671.236) (-1675.283) (-1678.134) -- 0:02:06
880000 -- (-1673.582) (-1678.933) (-1693.406) [-1666.374] * (-1671.595) (-1672.640) (-1691.093) [-1671.288] -- 0:02:05
Average standard deviation of split frequencies: 0.006637
881000 -- [-1668.313] (-1681.714) (-1688.454) (-1681.464) * [-1674.349] (-1682.516) (-1690.251) (-1671.212) -- 0:02:04
882000 -- (-1685.131) [-1669.407] (-1671.280) (-1687.429) * (-1676.216) (-1661.980) [-1670.601] (-1668.462) -- 0:02:03
883000 -- (-1681.595) [-1670.069] (-1676.661) (-1674.968) * (-1690.024) [-1677.865] (-1670.282) (-1678.103) -- 0:02:02
884000 -- (-1668.236) [-1685.545] (-1677.055) (-1693.605) * (-1678.160) [-1677.563] (-1669.094) (-1680.395) -- 0:02:00
885000 -- (-1683.562) (-1673.177) (-1682.290) [-1676.141] * [-1670.845] (-1683.082) (-1669.934) (-1694.725) -- 0:01:59
Average standard deviation of split frequencies: 0.006538
886000 -- (-1687.738) [-1682.610] (-1666.406) (-1681.169) * (-1666.655) [-1676.867] (-1671.779) (-1678.775) -- 0:01:58
887000 -- (-1679.894) (-1684.868) [-1678.444] (-1680.156) * [-1662.983] (-1681.514) (-1682.869) (-1662.286) -- 0:01:57
888000 -- (-1675.102) (-1683.453) [-1674.169] (-1666.796) * [-1670.378] (-1686.848) (-1671.381) (-1678.321) -- 0:01:56
889000 -- (-1673.933) [-1681.226] (-1676.546) (-1682.847) * (-1681.744) (-1685.125) [-1668.007] (-1685.648) -- 0:01:55
890000 -- (-1683.048) [-1676.557] (-1670.630) (-1671.692) * [-1687.377] (-1685.939) (-1668.238) (-1697.798) -- 0:01:54
Average standard deviation of split frequencies: 0.006820
891000 -- (-1679.186) [-1668.525] (-1695.650) (-1663.914) * (-1676.307) (-1688.472) (-1667.720) [-1678.326] -- 0:01:53
892000 -- (-1669.390) (-1680.237) (-1671.567) [-1672.017] * [-1677.171] (-1687.919) (-1671.654) (-1687.201) -- 0:01:52
893000 -- (-1680.334) [-1676.722] (-1671.815) (-1682.135) * (-1690.827) [-1668.523] (-1672.416) (-1679.774) -- 0:01:51
894000 -- (-1686.029) [-1675.252] (-1669.006) (-1683.291) * (-1681.391) (-1676.571) (-1671.677) [-1678.417] -- 0:01:50
895000 -- [-1674.108] (-1684.308) (-1670.532) (-1676.556) * (-1666.478) (-1681.396) (-1679.726) [-1675.630] -- 0:01:49
Average standard deviation of split frequencies: 0.006477
896000 -- (-1669.981) (-1688.636) (-1674.206) [-1680.604] * (-1688.251) (-1681.030) (-1668.428) [-1667.840] -- 0:01:48
897000 -- (-1685.772) [-1667.519] (-1673.417) (-1669.449) * (-1677.176) (-1672.320) (-1683.158) [-1676.699] -- 0:01:47
898000 -- (-1678.852) [-1661.855] (-1680.161) (-1671.259) * (-1683.918) (-1682.633) [-1663.842] (-1680.104) -- 0:01:46
899000 -- (-1668.889) [-1675.418] (-1679.290) (-1675.816) * (-1699.826) (-1684.858) [-1666.677] (-1687.615) -- 0:01:45
900000 -- [-1665.044] (-1688.218) (-1685.878) (-1676.524) * (-1686.064) (-1682.502) [-1669.066] (-1684.248) -- 0:01:44
Average standard deviation of split frequencies: 0.006490
901000 -- (-1679.092) [-1673.660] (-1688.745) (-1673.322) * (-1693.301) (-1695.478) (-1678.522) [-1686.890] -- 0:01:43
902000 -- [-1680.610] (-1669.997) (-1668.720) (-1673.101) * (-1678.827) (-1684.121) [-1672.419] (-1670.970) -- 0:01:42
903000 -- (-1674.320) (-1694.847) (-1683.176) [-1674.755] * (-1678.419) [-1670.030] (-1675.265) (-1671.221) -- 0:01:41
904000 -- (-1682.963) (-1685.160) [-1664.297] (-1686.678) * (-1680.071) (-1672.932) (-1672.395) [-1675.281] -- 0:01:40
905000 -- (-1702.392) [-1674.014] (-1666.444) (-1679.064) * (-1676.343) (-1689.132) (-1677.780) [-1668.249] -- 0:01:39
Average standard deviation of split frequencies: 0.006406
906000 -- (-1686.873) [-1679.719] (-1679.408) (-1679.009) * (-1689.802) (-1687.998) (-1676.217) [-1666.855] -- 0:01:38
907000 -- (-1667.032) [-1677.321] (-1685.254) (-1676.098) * (-1684.741) (-1678.006) [-1670.698] (-1676.369) -- 0:01:36
908000 -- (-1687.612) [-1683.607] (-1683.207) (-1679.968) * (-1683.988) (-1685.538) (-1684.467) [-1673.140] -- 0:01:35
909000 -- [-1664.553] (-1675.654) (-1678.840) (-1681.299) * (-1688.361) [-1670.089] (-1693.121) (-1670.400) -- 0:01:34
910000 -- [-1679.074] (-1677.204) (-1688.530) (-1688.980) * (-1675.038) (-1676.424) [-1665.072] (-1679.329) -- 0:01:33
Average standard deviation of split frequencies: 0.006488
911000 -- [-1666.320] (-1681.971) (-1683.308) (-1679.492) * [-1672.584] (-1672.535) (-1680.739) (-1675.840) -- 0:01:32
912000 -- (-1681.362) (-1691.984) [-1678.308] (-1688.339) * (-1695.261) (-1684.237) [-1676.042] (-1682.829) -- 0:01:31
913000 -- (-1693.074) (-1671.281) [-1666.305] (-1671.818) * [-1667.738] (-1680.669) (-1691.523) (-1674.429) -- 0:01:30
914000 -- (-1691.494) [-1675.058] (-1667.983) (-1691.308) * (-1667.286) (-1673.562) (-1688.979) [-1668.850] -- 0:01:29
915000 -- (-1691.194) (-1676.773) [-1676.033] (-1685.034) * [-1672.664] (-1685.820) (-1683.436) (-1677.680) -- 0:01:28
Average standard deviation of split frequencies: 0.006807
916000 -- (-1675.130) [-1665.066] (-1676.983) (-1689.551) * [-1678.716] (-1673.563) (-1674.532) (-1680.344) -- 0:01:27
917000 -- (-1668.244) (-1674.158) [-1687.120] (-1679.541) * [-1672.730] (-1672.787) (-1677.038) (-1690.062) -- 0:01:26
918000 -- (-1682.123) [-1673.545] (-1677.641) (-1681.060) * [-1665.015] (-1676.956) (-1688.650) (-1680.702) -- 0:01:25
919000 -- (-1685.635) [-1673.567] (-1686.206) (-1702.773) * [-1668.498] (-1674.894) (-1680.110) (-1689.551) -- 0:01:24
920000 -- (-1683.836) [-1664.666] (-1684.279) (-1683.224) * (-1684.661) (-1680.599) (-1683.258) [-1682.003] -- 0:01:23
Average standard deviation of split frequencies: 0.006819
921000 -- (-1693.050) [-1674.783] (-1687.762) (-1668.761) * [-1667.100] (-1684.099) (-1681.752) (-1673.402) -- 0:01:22
922000 -- [-1673.196] (-1687.006) (-1681.427) (-1682.873) * (-1672.056) (-1680.057) [-1688.993] (-1693.668) -- 0:01:21
923000 -- (-1685.616) [-1662.643] (-1672.698) (-1684.974) * (-1676.354) (-1681.627) [-1670.658] (-1677.723) -- 0:01:20
924000 -- (-1679.257) [-1670.964] (-1677.675) (-1671.225) * (-1680.582) (-1681.679) (-1680.971) [-1670.215] -- 0:01:19
925000 -- (-1677.367) [-1680.274] (-1673.287) (-1695.376) * (-1678.247) (-1675.223) [-1666.407] (-1690.552) -- 0:01:18
Average standard deviation of split frequencies: 0.006549
926000 -- [-1672.728] (-1685.846) (-1663.030) (-1685.708) * (-1680.877) (-1675.029) [-1666.477] (-1676.892) -- 0:01:17
927000 -- (-1679.169) (-1675.415) [-1667.510] (-1696.129) * (-1686.987) [-1678.073] (-1675.786) (-1677.401) -- 0:01:16
928000 -- (-1683.829) (-1669.382) [-1669.493] (-1693.344) * (-1672.977) [-1674.674] (-1681.226) (-1682.257) -- 0:01:15
929000 -- (-1673.743) [-1670.913] (-1677.515) (-1689.547) * (-1677.119) (-1686.319) (-1686.513) [-1659.947] -- 0:01:13
930000 -- [-1677.645] (-1679.795) (-1673.239) (-1674.307) * [-1683.883] (-1675.326) (-1677.233) (-1670.459) -- 0:01:12
Average standard deviation of split frequencies: 0.006677
931000 -- (-1679.852) [-1667.763] (-1685.610) (-1678.173) * [-1682.276] (-1680.293) (-1682.184) (-1682.385) -- 0:01:11
932000 -- [-1670.153] (-1680.462) (-1666.259) (-1694.144) * (-1677.935) (-1672.375) (-1680.478) [-1671.918] -- 0:01:10
933000 -- (-1675.484) (-1671.913) [-1673.513] (-1676.005) * (-1669.066) [-1667.835] (-1680.411) (-1683.305) -- 0:01:09
934000 -- (-1693.401) (-1672.543) (-1684.129) [-1670.893] * (-1673.635) (-1669.217) (-1695.949) [-1679.874] -- 0:01:08
935000 -- (-1677.994) (-1678.146) (-1677.291) [-1662.385] * (-1669.864) (-1685.102) [-1678.931] (-1695.970) -- 0:01:07
Average standard deviation of split frequencies: 0.006959
936000 -- (-1686.000) (-1688.571) [-1675.548] (-1689.601) * (-1671.642) (-1692.145) (-1699.671) [-1677.883] -- 0:01:06
937000 -- (-1674.976) (-1671.039) (-1696.139) [-1676.219] * (-1673.994) [-1660.923] (-1684.166) (-1672.276) -- 0:01:05
938000 -- (-1690.252) (-1675.668) (-1690.211) [-1671.340] * (-1684.012) [-1667.285] (-1681.279) (-1689.374) -- 0:01:04
939000 -- (-1685.621) (-1682.766) [-1676.232] (-1670.877) * [-1677.174] (-1683.676) (-1689.621) (-1667.538) -- 0:01:03
940000 -- [-1680.395] (-1684.371) (-1688.522) (-1680.240) * (-1682.696) (-1687.932) [-1675.340] (-1677.371) -- 0:01:02
Average standard deviation of split frequencies: 0.006731
941000 -- (-1684.793) (-1693.044) [-1663.596] (-1669.500) * (-1689.588) [-1681.691] (-1667.441) (-1677.628) -- 0:01:01
942000 -- (-1688.404) (-1681.104) (-1677.498) [-1674.479] * (-1675.098) (-1680.612) [-1675.444] (-1685.943) -- 0:01:00
943000 -- (-1700.031) (-1678.657) (-1683.091) [-1676.325] * [-1673.742] (-1685.551) (-1679.391) (-1681.918) -- 0:00:59
944000 -- [-1661.926] (-1674.112) (-1676.881) (-1679.763) * [-1671.151] (-1684.731) (-1675.226) (-1689.781) -- 0:00:58
945000 -- (-1680.550) [-1676.518] (-1674.831) (-1683.340) * (-1670.333) [-1677.149] (-1694.509) (-1678.351) -- 0:00:57
Average standard deviation of split frequencies: 0.006641
946000 -- (-1680.913) [-1669.621] (-1676.822) (-1701.347) * (-1682.578) (-1685.812) [-1672.424] (-1686.319) -- 0:00:56
947000 -- (-1678.905) (-1680.269) [-1669.293] (-1674.112) * [-1681.844] (-1678.165) (-1674.072) (-1676.010) -- 0:00:55
948000 -- [-1676.279] (-1680.722) (-1683.789) (-1670.561) * (-1675.139) (-1677.767) [-1680.358] (-1680.252) -- 0:00:54
949000 -- [-1675.332] (-1678.024) (-1697.531) (-1680.908) * (-1679.845) (-1671.917) (-1677.549) [-1667.907] -- 0:00:53
950000 -- [-1678.758] (-1690.311) (-1676.688) (-1701.673) * (-1682.911) (-1689.200) [-1676.620] (-1684.936) -- 0:00:52
Average standard deviation of split frequencies: 0.006392
951000 -- (-1681.418) [-1669.573] (-1680.284) (-1688.060) * (-1671.942) (-1683.183) [-1662.498] (-1675.328) -- 0:00:51
952000 -- (-1697.901) [-1676.295] (-1678.140) (-1686.596) * (-1682.873) (-1673.527) [-1671.975] (-1690.457) -- 0:00:50
953000 -- (-1685.225) (-1674.147) (-1688.009) [-1667.150] * (-1674.100) [-1665.138] (-1671.618) (-1676.943) -- 0:00:49
954000 -- (-1678.587) [-1676.735] (-1678.834) (-1687.892) * (-1691.036) [-1677.151] (-1681.928) (-1675.105) -- 0:00:47
955000 -- (-1683.959) [-1676.485] (-1675.395) (-1675.663) * (-1694.138) [-1669.123] (-1673.391) (-1682.205) -- 0:00:46
Average standard deviation of split frequencies: 0.006312
956000 -- (-1691.206) (-1681.256) [-1676.241] (-1678.604) * (-1691.796) (-1672.819) [-1673.419] (-1681.144) -- 0:00:45
957000 -- (-1676.135) [-1670.030] (-1670.157) (-1665.886) * (-1683.096) (-1686.238) [-1672.786] (-1674.087) -- 0:00:44
958000 -- (-1675.274) [-1667.736] (-1668.149) (-1678.855) * [-1665.174] (-1667.376) (-1687.297) (-1674.663) -- 0:00:43
959000 -- (-1686.504) [-1682.229] (-1675.277) (-1675.407) * (-1664.956) (-1675.485) (-1687.852) [-1674.288] -- 0:00:42
960000 -- (-1676.788) [-1668.130] (-1673.951) (-1685.946) * (-1681.712) (-1679.126) (-1672.057) [-1671.172] -- 0:00:41
Average standard deviation of split frequencies: 0.006368
961000 -- (-1673.216) [-1670.144] (-1671.991) (-1681.581) * (-1686.904) [-1676.495] (-1691.742) (-1672.206) -- 0:00:40
962000 -- (-1695.923) (-1674.928) (-1679.732) [-1678.013] * (-1676.262) (-1684.659) [-1675.990] (-1670.729) -- 0:00:39
963000 -- (-1700.490) (-1682.413) (-1676.232) [-1670.582] * (-1684.524) (-1695.567) [-1679.592] (-1682.547) -- 0:00:38
964000 -- (-1671.348) (-1670.231) (-1673.837) [-1677.511] * (-1692.996) [-1682.767] (-1665.153) (-1673.317) -- 0:00:37
965000 -- (-1675.820) [-1669.365] (-1682.825) (-1668.808) * (-1678.076) (-1678.989) [-1674.196] (-1679.426) -- 0:00:36
Average standard deviation of split frequencies: 0.006593
966000 -- (-1661.970) (-1680.911) (-1673.596) [-1673.106] * (-1686.486) (-1678.882) [-1667.581] (-1670.795) -- 0:00:35
967000 -- [-1672.966] (-1672.396) (-1677.683) (-1684.785) * (-1675.665) (-1681.257) [-1668.002] (-1671.640) -- 0:00:34
968000 -- (-1682.531) [-1664.984] (-1687.560) (-1680.761) * (-1667.939) (-1669.670) (-1677.393) [-1667.795] -- 0:00:33
969000 -- (-1685.751) (-1677.510) [-1667.354] (-1691.833) * [-1670.417] (-1673.982) (-1673.642) (-1684.775) -- 0:00:32
970000 -- (-1673.977) [-1670.400] (-1674.985) (-1670.526) * (-1676.374) (-1681.537) [-1676.938] (-1678.363) -- 0:00:31
Average standard deviation of split frequencies: 0.006465
971000 -- (-1676.217) [-1667.853] (-1670.340) (-1676.673) * (-1692.372) (-1671.360) (-1684.815) [-1677.373] -- 0:00:30
972000 -- (-1676.099) (-1670.440) (-1684.018) [-1664.643] * (-1693.325) (-1682.621) (-1673.788) [-1673.004] -- 0:00:29
973000 -- [-1664.813] (-1680.017) (-1685.721) (-1673.517) * (-1684.252) [-1679.759] (-1665.989) (-1676.919) -- 0:00:28
974000 -- (-1675.352) [-1673.571] (-1687.788) (-1694.303) * (-1682.156) (-1687.453) [-1668.939] (-1676.090) -- 0:00:27
975000 -- (-1687.004) (-1681.795) [-1665.737] (-1688.867) * [-1685.159] (-1678.740) (-1678.984) (-1683.403) -- 0:00:26
Average standard deviation of split frequencies: 0.006751
976000 -- (-1682.127) (-1686.942) [-1668.810] (-1669.952) * (-1690.814) (-1689.837) [-1669.138] (-1673.364) -- 0:00:25
977000 -- (-1701.678) (-1681.817) [-1678.099] (-1679.546) * [-1674.648] (-1680.382) (-1677.001) (-1690.656) -- 0:00:23
978000 -- (-1684.914) (-1683.341) (-1690.745) [-1669.258] * (-1688.677) [-1667.385] (-1682.930) (-1676.440) -- 0:00:22
979000 -- (-1669.820) [-1676.431] (-1692.249) (-1676.897) * (-1682.060) (-1679.966) [-1688.379] (-1681.292) -- 0:00:21
980000 -- (-1686.717) [-1670.799] (-1681.904) (-1678.795) * [-1675.561] (-1680.399) (-1678.204) (-1673.857) -- 0:00:20
Average standard deviation of split frequencies: 0.006794
981000 -- (-1676.158) (-1689.618) [-1661.792] (-1675.327) * [-1670.331] (-1682.708) (-1688.100) (-1681.314) -- 0:00:19
982000 -- (-1683.578) (-1694.550) (-1681.767) [-1675.756] * (-1683.430) [-1672.661] (-1684.456) (-1679.566) -- 0:00:18
983000 -- [-1694.179] (-1680.573) (-1686.787) (-1673.297) * (-1673.944) (-1683.562) [-1670.926] (-1686.292) -- 0:00:17
984000 -- (-1676.399) (-1671.769) (-1675.802) [-1675.418] * [-1670.754] (-1673.981) (-1672.266) (-1668.955) -- 0:00:16
985000 -- (-1678.097) [-1668.872] (-1681.139) (-1683.164) * [-1681.104] (-1680.074) (-1678.464) (-1674.099) -- 0:00:15
Average standard deviation of split frequencies: 0.006831
986000 -- (-1677.236) (-1683.314) (-1676.169) [-1667.920] * (-1675.667) (-1677.136) [-1670.138] (-1673.238) -- 0:00:14
987000 -- [-1679.098] (-1676.710) (-1693.328) (-1673.642) * (-1674.179) (-1678.700) [-1670.256] (-1682.380) -- 0:00:13
988000 -- (-1674.743) (-1678.414) (-1679.621) [-1669.306] * (-1667.918) [-1661.394] (-1671.042) (-1673.474) -- 0:00:12
989000 -- (-1670.904) (-1679.414) [-1682.671] (-1683.003) * (-1677.149) (-1676.943) [-1678.515] (-1682.878) -- 0:00:11
990000 -- [-1666.150] (-1673.669) (-1676.441) (-1683.520) * (-1701.127) (-1688.266) [-1682.177] (-1662.321) -- 0:00:10
Average standard deviation of split frequencies: 0.006556
991000 -- (-1678.544) (-1680.411) (-1678.527) [-1667.896] * [-1672.823] (-1683.573) (-1671.575) (-1685.894) -- 0:00:09
992000 -- (-1675.196) (-1691.612) (-1690.729) [-1672.302] * (-1676.328) (-1687.690) (-1671.213) [-1679.608] -- 0:00:08
993000 -- (-1668.842) (-1691.124) (-1680.168) [-1682.911] * (-1684.504) (-1679.719) (-1682.594) [-1674.940] -- 0:00:07
994000 -- (-1687.435) (-1682.385) [-1670.106] (-1688.017) * (-1675.186) (-1670.701) [-1676.590] (-1674.764) -- 0:00:06
995000 -- (-1678.975) (-1675.650) [-1667.793] (-1677.491) * (-1678.471) (-1686.022) [-1669.555] (-1679.313) -- 0:00:05
Average standard deviation of split frequencies: 0.006479
996000 -- (-1676.633) (-1674.696) [-1666.206] (-1686.812) * [-1668.277] (-1703.072) (-1672.056) (-1686.988) -- 0:00:04
997000 -- (-1676.532) (-1686.595) [-1672.971] (-1674.184) * [-1670.582] (-1670.551) (-1675.641) (-1680.212) -- 0:00:03
998000 -- (-1678.692) (-1689.980) [-1668.712] (-1674.356) * [-1675.988] (-1684.075) (-1677.876) (-1670.949) -- 0:00:02
999000 -- (-1675.207) (-1680.933) (-1686.154) [-1669.834] * (-1670.294) [-1671.989] (-1671.491) (-1666.281) -- 0:00:01
1000000 -- (-1691.049) [-1672.620] (-1688.062) (-1678.075) * (-1673.830) (-1681.424) [-1669.808] (-1674.826) -- 0:00:00
Average standard deviation of split frequencies: 0.006229
Analysis completed in 17 mins 23 seconds
Analysis used 1041.27 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -1654.27
Likelihood of best state for "cold" chain of run 2 was -1654.13
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
49.6 % ( 39 %) Dirichlet(Revmat{all})
67.3 % ( 46 %) Slider(Revmat{all})
28.7 % ( 22 %) Dirichlet(Pi{all})
30.7 % ( 24 %) Slider(Pi{all})
56.6 % ( 33 %) Multiplier(Alpha{1,2})
57.4 % ( 20 %) Multiplier(Alpha{3})
74.4 % ( 66 %) Slider(Pinvar{all})
46.3 % ( 47 %) ExtSPR(Tau{all},V{all})
35.6 % ( 36 %) ExtTBR(Tau{all},V{all})
48.1 % ( 52 %) NNI(Tau{all},V{all})
31.9 % ( 25 %) ParsSPR(Tau{all},V{all})
27.3 % ( 21 %) Multiplier(V{all})
60.3 % ( 64 %) Nodeslider(V{all})
25.3 % ( 18 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
48.6 % ( 46 %) Dirichlet(Revmat{all})
67.0 % ( 57 %) Slider(Revmat{all})
28.4 % ( 27 %) Dirichlet(Pi{all})
31.4 % ( 27 %) Slider(Pi{all})
55.9 % ( 31 %) Multiplier(Alpha{1,2})
57.5 % ( 28 %) Multiplier(Alpha{3})
73.9 % ( 60 %) Slider(Pinvar{all})
46.3 % ( 48 %) ExtSPR(Tau{all},V{all})
35.7 % ( 36 %) ExtTBR(Tau{all},V{all})
48.7 % ( 48 %) NNI(Tau{all},V{all})
32.0 % ( 26 %) ParsSPR(Tau{all},V{all})
27.2 % ( 30 %) Multiplier(V{all})
60.6 % ( 67 %) Nodeslider(V{all})
25.5 % ( 15 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.63 0.36 0.19
2 | 166742 0.66 0.40
3 | 166597 165970 0.68
4 | 167114 166626 166951
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.64 0.36 0.19
2 | 165709 0.66 0.39
3 | 167284 166795 0.68
4 | 166790 167137 166285
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -1670.19
|1 1 2 |
| 2 1 21 |
| * 1 2 212 2 |
| 1 11 1 1 2 |
| 2 2 221 2 1 2 12 12 1 |
| 1 12 2 1 22 2 2 11 2|
|22 2 2 2 2 1 1 12 2 12 2 1 |
| 1 2 1 2 2 1 1 11 2 1|
| 2 21 1 12 1 * 1 2 2 1 1 |
| 1 1 221 21 1 1 111 1 2 |
| 1 1 2 1 2 2 2 2 1 2 |
| 1 1 2 1 2 |
| 2 2 |
| 2 2 |
| 1 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -1676.77
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1660.99 -1690.70
2 -1663.91 -1686.03
--------------------------------------
TOTAL -1661.63 -1690.02
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.599662 0.003607 0.487130 0.722433 0.596048 1284.92 1357.45 1.000
r(A<->C){all} 0.124829 0.000788 0.069521 0.178156 0.122810 844.71 935.40 1.002
r(A<->G){all} 0.210341 0.001242 0.141826 0.280114 0.208140 744.89 796.55 1.000
r(A<->T){all} 0.146455 0.000685 0.096114 0.197162 0.144555 1073.46 1146.21 1.000
r(C<->G){all} 0.124336 0.001032 0.063290 0.187711 0.122339 757.89 772.16 1.000
r(C<->T){all} 0.274344 0.001439 0.197504 0.344036 0.272657 717.31 744.82 1.000
r(G<->T){all} 0.119695 0.000737 0.071973 0.176653 0.117801 792.73 929.75 1.000
pi(A){all} 0.278024 0.000336 0.240710 0.313094 0.277435 1214.43 1223.56 1.000
pi(C){all} 0.223619 0.000273 0.193331 0.258340 0.223376 1124.81 1125.40 1.000
pi(G){all} 0.191485 0.000247 0.160068 0.221613 0.191450 1047.02 1144.45 1.000
pi(T){all} 0.306871 0.000349 0.271040 0.344082 0.306356 1007.32 1097.51 1.001
alpha{1,2} 1.582460 0.830411 0.410390 3.442103 1.344566 1276.93 1303.18 1.000
alpha{3} 1.450089 0.825114 0.327144 3.180875 1.212092 1016.56 1171.63 1.001
pinvar{all} 0.173329 0.011015 0.000200 0.354673 0.165884 978.83 1017.88 1.002
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C1
2 -- C10
3 -- C11
4 -- C12
5 -- C13
6 -- C14
7 -- C15
8 -- C16
9 -- C17
10 -- C18
11 -- C19
12 -- C2
13 -- C20
14 -- C21
15 -- C3
16 -- C4
17 -- C5
18 -- C6
19 -- C7
20 -- C8
21 -- C9
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
---------------------------
1 -- .********************
2 -- .*...................
3 -- ..*..................
4 -- ...*.................
5 -- ....*................
6 -- .....*...............
7 -- ......*..............
8 -- .......*.............
9 -- ........*............
10 -- .........*...........
11 -- ..........*..........
12 -- ...........*.........
13 -- ............*........
14 -- .............*.......
15 -- ..............*......
16 -- ...............*.....
17 -- ................*....
18 -- .................*...
19 -- ..................*..
20 -- ...................*.
21 -- ....................*
22 -- .******.*************
23 -- .******.***.*********
24 -- ....*....**.**.**....
25 -- .**...*.......*....**
26 -- .****.*.***.*********
27 -- ....*....**.**.**.*..
28 -- .........**.**.**....
29 -- .**...*.*.....*..*.**
30 -- ...**....**.**.**.*..
31 -- ........*........*...
32 -- .**...*.......*..*.**
33 -- .**...*.*.....*....**
34 -- ..*...........*......
35 -- ..*...*..............
36 -- .*.................**
37 -- .*....*.......*....**
38 -- ...................**
39 -- .*.................*.
40 -- .*..................*
41 -- .*....*............**
42 -- ..*...*.......*......
43 -- .*............*....**
44 -- ....*...***.**.****..
45 -- ...**...***.**.****..
46 -- .........*...*.......
47 -- .**.*.*.***.*********
48 -- .****.*..**.*****.***
49 -- ...............**....
50 -- ............**.......
51 -- ............*...*....
52 -- .............*..*....
53 -- .........*......*....
54 -- .**...*............**
55 -- ..........*..*.......
56 -- ..........*....*.....
57 -- .........*..*........
58 -- .**...........*....**
59 -- .........**..........
60 -- ............*..*.....
61 -- .........*.....*.....
62 -- ......*.......*......
63 -- .........*..**.**....
64 -- ..........*.....*....
65 -- ..........*.*........
66 -- .............*.*.....
---------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
22 3002 1.000000 0.000000 1.000000 1.000000 2
23 3002 1.000000 0.000000 1.000000 1.000000 2
24 2850 0.949367 0.004711 0.946036 0.952698 2
25 2847 0.948368 0.001413 0.947368 0.949367 2
26 2689 0.895736 0.003298 0.893404 0.898068 2
27 2473 0.823784 0.006124 0.819454 0.828115 2
28 2342 0.780147 0.001884 0.778814 0.781479 2
29 1908 0.635576 0.002827 0.633578 0.637575 2
30 1757 0.585276 0.008951 0.578947 0.591606 2
31 1385 0.461359 0.024026 0.444370 0.478348 2
32 727 0.242172 0.003298 0.239840 0.244504 2
33 725 0.241506 0.019315 0.227848 0.255163 2
34 660 0.219853 0.005653 0.215856 0.223851 2
35 651 0.216855 0.021199 0.201865 0.231845 2
36 635 0.211526 0.017430 0.199201 0.223851 2
37 622 0.207195 0.003769 0.204530 0.209860 2
38 524 0.174550 0.007537 0.169221 0.179880 2
39 504 0.167888 0.004711 0.164557 0.171219 2
40 500 0.166556 0.001884 0.165223 0.167888 2
41 445 0.148235 0.008009 0.142572 0.153897 2
42 444 0.147901 0.011306 0.139907 0.155896 2
43 410 0.136576 0.002827 0.134577 0.138574 2
44 388 0.129247 0.001884 0.127915 0.130580 2
45 370 0.123251 0.000942 0.122585 0.123917 2
46 360 0.119920 0.000000 0.119920 0.119920 2
47 356 0.118588 0.003769 0.115923 0.121252 2
48 346 0.115256 0.009422 0.108594 0.121919 2
49 336 0.111925 0.000942 0.111259 0.112592 2
50 334 0.111259 0.002827 0.109260 0.113258 2
51 332 0.110593 0.000942 0.109927 0.111259 2
52 325 0.108261 0.005182 0.104597 0.111925 2
53 324 0.107928 0.000942 0.107262 0.108594 2
54 322 0.107262 0.006595 0.102598 0.111925 2
55 321 0.106929 0.011777 0.098601 0.115256 2
56 320 0.106596 0.012248 0.097935 0.115256 2
57 317 0.105596 0.012719 0.096602 0.114590 2
58 316 0.105263 0.015075 0.094604 0.115923 2
59 311 0.103598 0.006124 0.099267 0.107928 2
60 310 0.103264 0.003769 0.100600 0.105929 2
61 309 0.102931 0.003298 0.100600 0.105263 2
62 309 0.102931 0.002355 0.101266 0.104597 2
63 306 0.101932 0.006595 0.097268 0.106596 2
64 302 0.100600 0.005653 0.096602 0.104597 2
65 302 0.100600 0.004711 0.097268 0.103931 2
66 301 0.100266 0.002355 0.098601 0.101932 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.028990 0.000068 0.013886 0.044491 0.028181 1.000 2
length{all}[2] 0.001899 0.000004 0.000000 0.005517 0.001335 1.001 2
length{all}[3] 0.004814 0.000015 0.000000 0.011999 0.003954 1.000 2
length{all}[4] 0.072367 0.000227 0.044780 0.101163 0.071255 1.001 2
length{all}[5] 0.002476 0.000006 0.000001 0.007468 0.001734 1.000 2
length{all}[6] 0.041713 0.000194 0.016776 0.073436 0.041060 1.000 2
length{all}[7] 0.002581 0.000007 0.000000 0.007749 0.001747 1.000 2
length{all}[8] 0.002243 0.000005 0.000001 0.006764 0.001533 1.000 2
length{all}[9] 0.011429 0.000126 0.000003 0.033326 0.007936 1.000 2
length{all}[10] 0.002084 0.000005 0.000000 0.006320 0.001438 1.000 2
length{all}[11] 0.002064 0.000005 0.000000 0.006200 0.001417 1.000 2
length{all}[12] 0.002169 0.000005 0.000002 0.006513 0.001541 1.001 2
length{all}[13] 0.002090 0.000004 0.000000 0.006165 0.001493 1.000 2
length{all}[14] 0.002114 0.000004 0.000002 0.006242 0.001481 1.000 2
length{all}[15] 0.002610 0.000007 0.000003 0.007760 0.001815 1.000 2
length{all}[16] 0.002090 0.000004 0.000001 0.006238 0.001435 1.002 2
length{all}[17] 0.002060 0.000004 0.000000 0.006178 0.001403 1.000 2
length{all}[18] 0.011686 0.000144 0.000000 0.036006 0.007769 1.000 2
length{all}[19] 0.019070 0.000058 0.005884 0.034653 0.018329 1.000 2
length{all}[20] 0.001851 0.000003 0.000000 0.005524 0.001257 1.000 2
length{all}[21] 0.001865 0.000003 0.000002 0.005566 0.001286 1.001 2
length{all}[22] 0.020005 0.000049 0.007074 0.033294 0.019208 1.000 2
length{all}[23] 0.063546 0.000214 0.037397 0.092517 0.062419 1.000 2
length{all}[24] 0.040026 0.000154 0.013136 0.064665 0.039797 1.000 2
length{all}[25] 0.096405 0.002831 0.001646 0.180993 0.094504 1.000 2
length{all}[26] 0.031411 0.000153 0.008214 0.056722 0.030688 1.000 2
length{all}[27] 0.015919 0.000062 0.001644 0.030273 0.014900 1.000 2
length{all}[28] 0.004033 0.000009 0.000044 0.009736 0.003363 1.000 2
length{all}[29] 0.075144 0.001975 0.000429 0.157895 0.069227 1.000 2
length{all}[30] 0.012592 0.000062 0.000018 0.027496 0.011419 1.000 2
length{all}[31] 0.019639 0.000225 0.000323 0.048462 0.016084 1.000 2
length{all}[32] 0.040917 0.001492 0.000076 0.126582 0.028895 1.001 2
length{all}[33] 0.040829 0.001384 0.000003 0.120908 0.030087 0.999 2
length{all}[34] 0.004192 0.000013 0.000002 0.011592 0.003259 1.002 2
length{all}[35] 0.004175 0.000013 0.000009 0.011329 0.003232 0.999 2
length{all}[36] 0.003750 0.000011 0.000004 0.010787 0.002866 0.998 2
length{all}[37] 0.004311 0.000012 0.000054 0.010576 0.003612 0.999 2
length{all}[38] 0.001849 0.000003 0.000001 0.005151 0.001319 0.999 2
length{all}[39] 0.001885 0.000004 0.000001 0.005933 0.001295 0.999 2
length{all}[40] 0.002127 0.000004 0.000008 0.006393 0.001521 0.998 2
length{all}[41] 0.003501 0.000009 0.000004 0.009406 0.002680 1.003 2
length{all}[42] 0.003771 0.000009 0.000006 0.009881 0.003058 0.998 2
length{all}[43] 0.003761 0.000010 0.000004 0.009427 0.003046 0.999 2
length{all}[44] 0.014890 0.000065 0.000149 0.028935 0.014171 0.997 2
length{all}[45] 0.012740 0.000064 0.000026 0.029054 0.010870 0.997 2
length{all}[46] 0.002117 0.000005 0.000010 0.006428 0.001387 0.997 2
length{all}[47] 0.007072 0.000027 0.000004 0.017134 0.006226 1.002 2
length{all}[48] 0.025826 0.000210 0.000036 0.048146 0.025064 1.002 2
length{all}[49] 0.002102 0.000004 0.000008 0.006428 0.001454 1.009 2
length{all}[50] 0.002089 0.000004 0.000006 0.006010 0.001504 1.003 2
length{all}[51] 0.002186 0.000005 0.000006 0.006137 0.001460 1.000 2
length{all}[52] 0.002053 0.000004 0.000003 0.006087 0.001518 1.016 2
length{all}[53] 0.002245 0.000006 0.000002 0.006290 0.001466 0.998 2
length{all}[54] 0.002870 0.000009 0.000005 0.008919 0.002009 1.018 2
length{all}[55] 0.001916 0.000004 0.000010 0.005999 0.001314 1.000 2
length{all}[56] 0.002131 0.000005 0.000012 0.006380 0.001449 1.001 2
length{all}[57] 0.001944 0.000004 0.000003 0.005467 0.001522 0.997 2
length{all}[58] 0.002797 0.000008 0.000004 0.007867 0.001939 0.997 2
length{all}[59] 0.002039 0.000004 0.000003 0.006041 0.001338 1.002 2
length{all}[60] 0.002064 0.000004 0.000004 0.005749 0.001444 0.997 2
length{all}[61] 0.001995 0.000003 0.000013 0.005752 0.001484 1.010 2
length{all}[62] 0.002639 0.000007 0.000001 0.008029 0.001669 0.998 2
length{all}[63] 0.002049 0.000004 0.000001 0.006391 0.001496 0.997 2
length{all}[64] 0.002103 0.000005 0.000001 0.006737 0.001341 0.997 2
length{all}[65] 0.002042 0.000004 0.000001 0.006529 0.001319 1.007 2
length{all}[66] 0.002104 0.000004 0.000002 0.006563 0.001487 1.002 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.006229
Maximum standard deviation of split frequencies = 0.024026
Average PSRF for parameter values (excluding NA and >10.0) = 1.001
Maximum PSRF for parameter values = 1.018
Clade credibility values:
/---------------------------------------------------------------------- C1 (1)
|
|---------------------------------------------------------------------- C16 (8)
|
| /--------- C10 (2)
| |
| |--------- C11 (3)
| |
| |--------- C15 (7)
| /---95--+
| | |--------- C3 (15)
| | |
| | |--------- C8 (20)
| | |
| /------------64------------+ \--------- C9 (21)
| | |
| | |----------------- C17 (9)
| | |
+ | \----------------- C6 (18)
| |
| /---90--+ /----------------------------------- C12 (4)
| | | |
| | | | /----------------- C13 (5)
| | | | |
| | | | | /--------- C18 (10)
| | | | | |
| | \---59---+ /---95---+ |--------- C19 (11)
| | | | | |
| | | | | |--------- C20 (13)
| /---100--+ | | \---78--+
| | | | | |--------- C21 (14)
| | | \---82---+ |
| | | | |--------- C4 (16)
| | | | |
| | | | \--------- C5 (17)
\---100--+ | |
| | \-------------------------- C7 (19)
| |
| \---------------------------------------------------- C14 (6)
|
\------------------------------------------------------------- C2 (12)
Phylogram (based on average branch lengths):
/------- C1 (1)
|
| C16 (8)
|
| / C10 (2)
| |
| |- C11 (3)
| |
| | C15 (7)
| /-----------------------+
| | | C3 (15)
| | |
| | | C8 (20)
| | |
| /-----------------+ \ C9 (21)
| | |
| | |-- C17 (9)
| | |
+ | \-- C6 (18)
| |
| /------+ /------------------ C12 (4)
| | | |
| | | | /- C13 (5)
| | | | |
| | | | |/ C18 (10)
| | | | ||
| | \--+ /---------+| C19 (11)
| | | | ||
| | | | || C20 (13)
| /---------------+ | | \+
| | | | | | C21 (14)
| | | \---+ |
| | | | | C4 (16)
| | | | |
| | | | \ C5 (17)
\----+ | |
| | \----- C7 (19)
| |
| \---------- C14 (6)
|
\ C2 (12)
|-----------| 0.050 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3001 trees sampled):
50 % credible set contains 1500 trees
90 % credible set contains 2701 trees
95 % credible set contains 2851 trees
99 % credible set contains 2971 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Wed Nov 02 20:10:53 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.05 sec, SCORE=993, Nseq=21, Len=172
C1 ---------------------------------MAALGHKAKLAAVFIGP
C2 ---------------------------------MAALGHKAKLAAVFIGP
C3 --------------------------------------------------
C4 ---------------------------------MALIGPKTTIAAVFIGP
C5 ---------------------------------MALIGPKTTIAAVFIGP
C6 --------------------------------------------------
C7 ---------------------------------MAIIGPKTTIAAVFIGP
C8 MRIDYHSPCRKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGP
C9 MRIDYHSPCRKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGP
C10 MRIDYHSPCRKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGP
C11 MRIDYHSLSWKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGP
C12 ---------------------------------MAVLGPKATFAAVFIGP
C13 ---------------------------------MALIGPKTTIAAVFIGP
C14 ---------------------------------MAVLGPKATLAAVFIGP
C15 --------------------------------------------------
C16 ---------------------------------MAALGHKAKLAAVFIGP
C17 --------------------------------------------------
C18 ---------------------------------MALIGPKTTIAAVFIGP
C19 ---------------------------------MALIGPKTTIAAVFIGP
C20 ---------------------------------MALIGPKTTIAAVFIGP
C21 ---------------------------------MALIGPKTTIAAVFIGP
C1 FIVACMLGISLVYLYQLQNQIFHVNNTIRVTGKPAKLYYSLSTSVTPVAT
C2 FIVACMLGISLVYLYQLQVQIFHVNNTIRVTGKPATVSYTLSTPVTPVAT
C3 -----MLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C4 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C5 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C6 -----MLGIGLVYSLQLQV-------------------------------
C7 FIVACMLGIGLVYLLQLQVQIFHVNDTIRVTGKPATVSYTISTPVTPSAT
C8 FIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C9 FIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C10 FIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C11 FIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C12 FIVACMLGIGLVYLYQVQVKIFHVDDTLRVTGKPATVSYTTSTPVTPSAT
C13 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C14 FIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C15 -----MLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSAT
C16 FIVACMLGISLVYLYQLQVQIFHVNNTIRVTGKPATVSYTLSTPVTPVAT
C17 -----MLGIGLVYSLQLQV-------------------------------
C18 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C19 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C20 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
C21 FLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVAT
****.*** *:*
C1 TLDGTTYTLIRPTSSYTRVYLGKTRGFDTSTFGPKVLNYITSSKPHLNSG
C2 TLDGTTYTLIRPTSSYTRVYLGKTRGFDTSTFGPKVLNYITSSKPHLNSG
C3 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C4 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C5 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C6 --------------------------------------------------
C7 TLDGTTYTLIRPTSSYTRVHLGSPRGFDTSTFGPKTLDYTTSSKPHLNSG
C8 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C9 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C10 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C11 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C12 TLDGTTYTLIRPTSSYTRVYLGSPRGFDTSTFGPKTLDYITSSKPHLNSG
C13 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C14 TLDGTTYTLIRPTSSYTRVYLGKTRGFDTSTFGPKVLDYITSSKPHLNSG
C15 TLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILV
C16 TLDGTTYTLIRPTSSYTRVYLGKTRGFDTSTFGPKVLNYITSSKPHLNSG
C17 --------------------------------------------------
C18 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C19 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C20 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C21 TLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSG
C1 RPYTFRHMPKYMKGLV------
C2 RPYTFRHMPKYMTPSATWRFGM
C3 VHILLRHCPGI-----------
C4 RPYTLRHLPKYMTPPATWRFGL
C5 RPYTLRHLPKYMTPPATWRFGL
C6 ----------------------
C7 RPYTLRHLPKYMTPPAIWRFGM
C8 VHILLRHCPGI-----------
C9 VHILLRHCPGI-----------
C10 VHILLRHCPGI-----------
C11 VHILLRHCPGI-----------
C12 RPYSLKALPRHMRPPATWRYGM
C13 RPYTLRHLPKYMTPPATWRFGM
C14 RPYSLSC---------------
C15 VHILLRHCPGI-----------
C16 RPYTFRHMPKYMKGLV------
C17 ----------------------
C18 RPYTLRHLPKYMTPPATWRFGL
C19 RPYTLRHLPKYMTPPATWRFGL
C20 RPYTLRHLPKYMTPPATWRFGL
C21 RPYTLRHLPKYMTPPATWRFGL
-- Starting log on Thu Nov 03 00:02:35 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/codeml,A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C1 516 sites
reading seq# 2 C2 516 sites
reading seq# 3 C3 516 sites
reading seq# 4 C4 516 sites
reading seq# 5 C5 516 sites
reading seq# 6 C6 516 sites
reading seq# 7 C7 516 sites
reading seq# 8 C8 516 sites
reading seq# 9 C9 516 sites
reading seq#10 C10 516 sites
reading seq#11 C11 516 sites
reading seq#12 C12 516 sites
reading seq#13 C13 516 sites
reading seq#14 C14 516 sites
reading seq#15 C15 516 sites
reading seq#16 C16 516 sites
reading seq#17 C17 516 sites
reading seq#18 C18 516 sites
reading seq#19 C19 516 sites
reading seq#20 C20 516 sites
reading seq#21 C21 516 sitesns = 21 ls = 516
Reading sequences, sequential format..
Reading seq # 1: C1
Reading seq # 2: C2
Reading seq # 3: C3
Reading seq # 4: C4
Reading seq # 5: C5
Reading seq # 6: C6
Reading seq # 7: C7
Reading seq # 8: C8
Reading seq # 9: C9
Reading seq #10: C10
Reading seq #11: C11
Reading seq #12: C12
Reading seq #13: C13
Reading seq #14: C14
Reading seq #15: C15
Reading seq #16: C16
Reading seq #17: C17
Reading seq #18: C18
Reading seq #19: C19
Reading seq #20: C20
Reading seq #21: C21
Sites with gaps or missing data are removed.
117 ambiguity characters in seq. 1
99 ambiguity characters in seq. 2
198 ambiguity characters in seq. 3
99 ambiguity characters in seq. 4
99 ambiguity characters in seq. 5
474 ambiguity characters in seq. 6
99 ambiguity characters in seq. 7
33 ambiguity characters in seq. 8
33 ambiguity characters in seq. 9
33 ambiguity characters in seq. 10
33 ambiguity characters in seq. 11
99 ambiguity characters in seq. 12
99 ambiguity characters in seq. 13
144 ambiguity characters in seq. 14
198 ambiguity characters in seq. 15
117 ambiguity characters in seq. 16
474 ambiguity characters in seq. 17
99 ambiguity characters in seq. 18
99 ambiguity characters in seq. 19
99 ambiguity characters in seq. 20
99 ambiguity characters in seq. 21
158 sites are removed. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172
Sequences read..
Counting site patterns.. 0:00
Compressing, 12 patterns at 14 / 14 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 12 patterns at 14 / 14 sites (100.0%), 0:00
Counting codons..
1680 bytes for distance
11712 bytes for conP
1056 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(1, 16, (((((10, 11, 15, 3, 8, 9), 17, 6), (12, ((13, (18, 19, 20, 21, 4, 5)), 7))), 14), 2)); MP score: 11
58560 bytes for conP, adjusted
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
25
0.101865 0.016747 0.041642 0.060377 0.102066 0.097133 0.095261 0.012092 0.077141 0.051489 0.089017 0.020210 0.034434 0.018128 0.082128 0.085326 0.103500 0.084786 0.019693 0.099406 0.018011 0.052191 0.018845 0.017712 0.101074 0.073313 0.045034 0.083743 0.096156 0.016735 0.300000 0.892575 0.515733
ntime & nrate & np: 30 2 33
Bounds (np=33):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 8.115679
np = 33
lnL0 = -156.952420
Iterating by ming2
Initial: fx= 156.952420
x= 0.10186 0.01675 0.04164 0.06038 0.10207 0.09713 0.09526 0.01209 0.07714 0.05149 0.08902 0.02021 0.03443 0.01813 0.08213 0.08533 0.10350 0.08479 0.01969 0.09941 0.01801 0.05219 0.01884 0.01771 0.10107 0.07331 0.04503 0.08374 0.09616 0.01674 0.30000 0.89257 0.51573
1 h-m-p 0.0000 0.0009 105.9978 ++++ 148.661862 m 0.0009 40 | 1/33
2 h-m-p 0.0000 0.0002 123.7388 ++ 146.677866 m 0.0002 76 | 2/33
3 h-m-p 0.0000 0.0000 3139.7863 ++ 146.579323 m 0.0000 112 | 3/33
4 h-m-p 0.0000 0.0000 117.2414 ++ 146.335225 m 0.0000 148 | 4/33
5 h-m-p 0.0000 0.0001 66.1346 ++ 146.165677 m 0.0001 184 | 5/33
6 h-m-p 0.0000 0.0000 43.6887 ++ 146.144536 m 0.0000 220 | 6/33
7 h-m-p 0.0000 0.0000 475.5211 ++ 146.104804 m 0.0000 256 | 7/33
8 h-m-p 0.0001 0.0024 11.7663 +++ 144.812000 m 0.0024 293 | 8/33
9 h-m-p 0.0000 0.0000 28270.6565 ++ 143.644723 m 0.0000 329 | 9/33
10 h-m-p 0.0000 0.0000 604665.4913 ++ 141.983871 m 0.0000 365 | 10/33
11 h-m-p 0.0000 0.0001 331.3743 ++ 141.064925 m 0.0001 401 | 11/33
12 h-m-p 0.0000 0.0000 2708.4501 ++ 140.974053 m 0.0000 437 | 12/33
13 h-m-p 0.0000 0.0001 437.8588 ++ 138.486706 m 0.0001 473 | 13/33
14 h-m-p 0.0000 0.0000 2503.8001 ++ 138.093100 m 0.0000 509 | 14/33
15 h-m-p 0.0000 0.0000 505.8917 ++ 138.091659 m 0.0000 545 | 15/33
16 h-m-p 0.0000 0.0001 273.4296 ++ 137.284600 m 0.0001 581 | 16/33
17 h-m-p 0.0000 0.0001 82.3704 ++ 137.085321 m 0.0001 617 | 17/33
18 h-m-p 0.0000 0.0000 14573.1284 ++ 136.872190 m 0.0000 653 | 18/33
19 h-m-p 0.0000 0.0000 40.8970 ++ 136.838298 m 0.0000 689 | 19/33
20 h-m-p 0.0000 0.0007 12.9085 ++ 136.684884 m 0.0007 725 | 20/33
21 h-m-p 0.0003 0.0045 20.0758 ++ 135.487951 m 0.0045 761 | 21/33
22 h-m-p 0.0054 0.0271 3.9325 ++ 133.690195 m 0.0271 797 | 22/33
23 h-m-p 0.0000 0.0001 112.5796 ++ 133.531544 m 0.0001 833 | 23/33
24 h-m-p 0.0008 0.0040 12.9731 ++ 132.725070 m 0.0040 869 | 24/33
25 h-m-p 0.0000 0.0002 51.4170 ++ 132.620973 m 0.0002 905 | 25/33
26 h-m-p 0.0123 1.6548 0.3876 ++++ 128.161989 m 1.6548 943 | 25/33
27 h-m-p 0.0000 0.0000 6.6905
h-m-p: 0.00000000e+00 0.00000000e+00 6.69054476e+00 128.161989
.. | 25/33
28 h-m-p 0.0012 0.6155 83.1997 YYYCCCCC 126.759930 7 0.0011 1031 | 25/33
29 h-m-p 0.0060 0.2116 16.0648 +CYCCC 124.911024 4 0.0203 1075 | 25/33
30 h-m-p 0.0057 0.0284 7.8323 YCYCCC 124.419344 5 0.0158 1119 | 25/33
31 h-m-p 0.0028 0.0141 6.6224 ++ 124.087019 m 0.0141 1155 | 26/33
32 h-m-p 0.0415 0.3584 2.2548 CCCC 123.923935 3 0.0669 1197 | 26/33
33 h-m-p 0.2677 1.6234 0.5631 YCCCC 123.506501 4 0.5105 1240 | 26/33
34 h-m-p 0.0380 0.3230 7.5655 CYCC 123.129449 3 0.0402 1288 | 26/33
35 h-m-p 1.6000 8.0000 0.1635 CCCC 122.973233 3 1.4822 1330 | 26/33
36 h-m-p 1.6000 8.0000 0.1248 CCC 122.894648 2 1.9864 1377 | 26/33
37 h-m-p 1.6000 8.0000 0.0395 CCC 122.888810 2 1.4321 1424 | 26/33
38 h-m-p 1.6000 8.0000 0.0080 CC 122.888637 1 1.4020 1469 | 26/33
39 h-m-p 1.6000 8.0000 0.0011 C 122.888620 0 1.7851 1512 | 26/33
40 h-m-p 1.5803 8.0000 0.0012 YC 122.888610 1 2.7108 1556 | 26/33
41 h-m-p 1.6000 8.0000 0.0002 C 122.888608 0 1.8603 1599 | 26/33
42 h-m-p 1.6000 8.0000 0.0001 Y 122.888608 0 1.0706 1642 | 26/33
43 h-m-p 1.6000 8.0000 0.0000 C 122.888608 0 1.6000 1685 | 26/33
44 h-m-p 1.6000 8.0000 0.0000 Y 122.888608 0 1.6000 1728 | 26/33
45 h-m-p 1.6000 8.0000 0.0000 ------C 122.888608 0 0.0001 1777
Out..
lnL = -122.888608
1778 lfun, 5334 eigenQcodon, 106680 P(t)
end of tree file.
Time used: 0:27
Model 2: PositiveSelection
TREE # 1
(1, 16, (((((10, 11, 15, 3, 8, 9), 17, 6), (12, ((13, (18, 19, 20, 21, 4, 5)), 7))), 14), 2)); MP score: 11
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
25
0.060810 0.077591 0.083112 0.057529 0.015367 0.034487 0.034755 0.104112 0.013812 0.025865 0.101478 0.022156 0.079000 0.094234 0.067559 0.042109 0.019427 0.021712 0.028691 0.108402 0.019724 0.055312 0.030483 0.081835 0.072075 0.095412 0.034587 0.082491 0.090735 0.095849 2.080103 1.121526 0.345574 0.167370 1.531574
ntime & nrate & np: 30 3 35
Bounds (np=35):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 4.285870
np = 35
lnL0 = -163.639726
Iterating by ming2
Initial: fx= 163.639726
x= 0.06081 0.07759 0.08311 0.05753 0.01537 0.03449 0.03475 0.10411 0.01381 0.02587 0.10148 0.02216 0.07900 0.09423 0.06756 0.04211 0.01943 0.02171 0.02869 0.10840 0.01972 0.05531 0.03048 0.08183 0.07208 0.09541 0.03459 0.08249 0.09074 0.09585 2.08010 1.12153 0.34557 0.16737 1.53157
1 h-m-p 0.0000 0.0010 307.8464 ++++ 142.132534 m 0.0010 42 | 1/35
2 h-m-p 0.0001 0.0003 75.2872 ++ 140.548904 m 0.0003 80 | 2/35
3 h-m-p 0.0000 0.0000 892.9605 ++ 140.003847 m 0.0000 118 | 3/35
4 h-m-p 0.0001 0.0004 44.3855 ++ 139.399578 m 0.0004 156 | 4/35
5 h-m-p 0.0002 0.0011 25.6689 ++ 138.784717 m 0.0011 194 | 5/35
6 h-m-p 0.0000 0.0001 499.4036 ++ 138.218971 m 0.0001 232 | 6/35
7 h-m-p 0.0000 0.0000 1378.4152 ++ 138.096722 m 0.0000 270 | 7/35
8 h-m-p 0.0001 0.0004 75.7711 ++ 137.372697 m 0.0004 308 | 8/35
9 h-m-p 0.0001 0.0005 71.9026 ++ 136.130239 m 0.0005 346 | 9/35
10 h-m-p 0.0011 0.0056 22.3100 ++ 133.913370 m 0.0056 384 | 10/35
11 h-m-p 0.0009 0.0044 24.6388 ++ 132.120703 m 0.0044 422 | 11/35
12 h-m-p 0.0000 0.0001 688.2763 ++ 131.429344 m 0.0001 460 | 12/35
13 h-m-p 0.0001 0.0004 29.2707 ++ 131.128063 m 0.0004 498 | 13/35
14 h-m-p 0.0000 0.0000 92.7169 ++ 131.075252 m 0.0000 536 | 14/35
15 h-m-p 0.0000 0.0008 75.3537 +++ 129.845211 m 0.0008 575 | 15/35
16 h-m-p 0.0000 0.0000 98.0150 ++ 129.834591 m 0.0000 613 | 16/35
17 h-m-p 0.0000 0.0019 20.6374 ++++ 129.160352 m 0.0019 653 | 17/35
18 h-m-p 0.0000 0.0002 28.9277 ++ 129.003811 m 0.0002 691 | 18/35
19 h-m-p 0.0000 0.0001 104.3223 ++ 128.901099 m 0.0001 729 | 19/35
20 h-m-p 0.0001 0.0004 21.5550 ++ 128.760080 m 0.0004 767 | 20/35
21 h-m-p 0.0001 0.0012 52.7475 ++ 127.705186 m 0.0012 805 | 21/35
22 h-m-p 0.0002 0.0009 82.9286 ++ 126.586961 m 0.0009 843 | 22/35
23 h-m-p 0.0007 0.0037 26.9946 ++ 125.041640 m 0.0037 881 | 23/35
24 h-m-p 0.0041 0.0206 4.5721 ++ 124.207903 m 0.0206 919 | 24/35
25 h-m-p 0.0014 0.0070 8.4114 ++ 123.419346 m 0.0070 957 | 25/35
26 h-m-p 0.0007 0.0033 53.7793 ++ 122.151923 m 0.0033 995 | 26/35
27 h-m-p 0.0922 8.0000 1.8046 +++YCYCCC 117.503329 5 3.6403 1044 | 26/35
28 h-m-p 1.6000 8.0000 0.5979 YCCC 117.372244 3 0.6214 1087 | 26/35
29 h-m-p 0.7523 8.0000 0.4939 ++ 116.501800 m 8.0000 1134 | 26/35
30 h-m-p 1.6000 8.0000 0.4780 +YCCC 116.078259 3 4.4223 1187 | 26/35
31 h-m-p 1.2112 8.0000 1.7454 +YCCC 115.426859 3 3.2672 1240 | 26/35
32 h-m-p 1.6000 8.0000 2.3149 CCCC 115.171359 3 2.0132 1284 | 26/35
33 h-m-p 1.6000 8.0000 1.6092 +YCCC 114.940210 3 4.6381 1328 | 26/35
34 h-m-p 1.6000 8.0000 2.5145 YCCC 114.642071 3 3.1173 1371 | 26/35
35 h-m-p 1.6000 8.0000 2.0444 YCCC 114.537040 3 2.7267 1414 | 26/35
36 h-m-p 1.6000 8.0000 1.8886 YCCC 114.476267 3 2.7865 1457 | 26/35
37 h-m-p 1.6000 8.0000 0.6345 YCC 114.446362 2 2.9193 1498 | 26/35
38 h-m-p 1.6000 8.0000 0.1713 +CCC 114.388353 2 6.1398 1550 | 26/35
39 h-m-p 0.9557 8.0000 1.1005 YCCC 114.366481 3 1.9389 1602 | 26/35
40 h-m-p 1.6000 8.0000 0.1596 CCCC 114.351228 3 2.2120 1646 | 26/35
41 h-m-p 1.0923 8.0000 0.3231 +YCCC 114.331045 3 2.9539 1699 | 26/35
42 h-m-p 1.6000 8.0000 0.5930 YC 114.306394 1 3.3021 1747 | 26/35
43 h-m-p 1.6000 8.0000 0.1742 CCC 114.297795 2 2.2114 1798 | 26/35
44 h-m-p 0.3591 8.0000 1.0728 +++ 114.228552 m 8.0000 1846 | 26/35
45 h-m-p 1.6000 8.0000 5.0685 CYC 114.172908 2 1.8055 1887 | 26/35
46 h-m-p 1.6000 8.0000 1.9554 CYC 114.164003 2 1.7472 1928 | 26/35
47 h-m-p 1.6000 8.0000 0.1932 CC 114.162367 1 2.0327 1968 | 25/35
48 h-m-p 0.6272 3.8832 0.6262 YCCC 114.152445 3 0.3110 2020 | 25/35
49 h-m-p 0.0747 8.0000 2.6074 +++CCCC 114.089695 3 4.9800 2077 | 25/35
50 h-m-p 0.6661 3.3303 17.4863 CCCC 114.053660 3 1.0703 2121 | 25/35
51 h-m-p 0.6025 8.0000 31.0625 ++ 113.665423 m 8.0000 2159 | 25/35
52 h-m-p 0.1330 0.6652 110.8185 ++ 113.458459 m 0.6652 2197 | 25/35
53 h-m-p -0.0000 -0.0000 44.5313
h-m-p: -0.00000000e+00 -0.00000000e+00 4.45313095e+01 113.458459
.. | 25/35
54 h-m-p 0.0012 0.6154 0.8158 ++++YYCCC 113.364169 4 0.2399 2280 | 25/35
55 h-m-p 0.4172 2.0862 0.3992 YCC 113.347239 2 0.2538 2331 | 25/35
56 h-m-p 0.2938 1.9624 0.3449 YCCC 113.341061 3 0.1689 2384 | 25/35
57 h-m-p 0.7419 8.0000 0.0785 YC 113.339939 1 0.3738 2433 | 25/35
58 h-m-p 0.1440 8.0000 0.2038 ++CCCC 113.319909 3 2.9843 2489 | 25/35
59 h-m-p 0.9406 8.0000 0.6467 +YCCC 113.273084 3 2.5785 2543 | 25/35
60 h-m-p 1.6000 8.0000 0.4009 YCC 113.262179 2 0.9728 2594 | 25/35
61 h-m-p 1.6000 8.0000 0.0877 YC 113.260086 1 2.8753 2643 | 25/35
62 h-m-p 1.6000 8.0000 0.0590 CC 113.258321 1 2.3374 2693 | 25/35
63 h-m-p 1.6000 8.0000 0.0262 +YC 113.256666 1 7.1565 2743 | 25/35
64 h-m-p 1.2804 8.0000 0.1464 ++ 113.247528 m 8.0000 2791 | 25/35
65 h-m-p 1.6000 8.0000 0.0862 YCC 113.246602 2 1.0528 2842 | 25/35
66 h-m-p 1.6000 8.0000 0.0137 YC 113.246594 1 1.0963 2891 | 25/35
67 h-m-p 1.6000 8.0000 0.0029 ++ 113.246585 m 8.0000 2939 | 25/35
68 h-m-p 1.6000 8.0000 0.0143 ++ 113.246441 m 8.0000 2987 | 25/35
69 h-m-p 0.0265 8.0000 4.3020 +++C 113.241721 0 1.7016 3038 | 25/35
70 h-m-p 1.6000 8.0000 2.6192 +YC 113.234411 1 4.5076 3078 | 25/35
71 h-m-p 1.6000 8.0000 0.4929 YC 113.234275 1 0.9181 3117 | 25/35
72 h-m-p 1.6000 8.0000 0.0068 C 113.234267 0 1.8718 3165 | 25/35
73 h-m-p 0.4887 8.0000 0.0259 +++ 113.234215 m 8.0000 3214 | 25/35
74 h-m-p 0.1503 8.0000 1.3806 ++C 113.233521 0 2.4831 3264 | 25/35
75 h-m-p 1.6000 8.0000 0.7625 ++ 113.227082 m 8.0000 3302 | 25/35
76 h-m-p 0.0236 2.2414 258.9746 ++++ 112.954242 m 2.2414 3352 | 26/35
77 h-m-p 1.0858 5.4291 34.4731 CCC 112.941999 2 0.2960 3394 | 26/35
78 h-m-p 0.9853 8.0000 10.3569 CCC 112.934403 2 1.3152 3436 | 26/35
79 h-m-p 1.6000 8.0000 0.7240 YC 112.933387 1 1.2556 3475 | 26/35
80 h-m-p 1.6000 8.0000 0.2911 CC 112.932950 1 1.9859 3524 | 26/35
81 h-m-p 1.6000 8.0000 0.2973 CC 112.932823 1 1.8937 3573 | 26/35
82 h-m-p 1.6000 8.0000 0.2133 CC 112.932743 1 2.3499 3622 | 26/35
83 h-m-p 1.6000 8.0000 0.1553 C 112.932741 0 1.4267 3669 | 26/35
84 h-m-p 1.6000 8.0000 0.0135 C 112.932741 0 2.0942 3716 | 26/35
85 h-m-p 1.6000 8.0000 0.0030 Y 112.932741 0 2.7896 3763 | 26/35
86 h-m-p 0.9252 8.0000 0.0092 Y 112.932741 0 1.5595 3810 | 26/35
87 h-m-p 1.6000 8.0000 0.0002 C 112.932741 0 1.7626 3857 | 26/35
88 h-m-p 1.6000 8.0000 0.0000 C 112.932741 0 2.0145 3904 | 26/35
89 h-m-p 1.6000 8.0000 0.0000 C 112.932741 0 1.6000 3951 | 26/35
90 h-m-p 1.6000 8.0000 0.0000 -Y 112.932741 0 0.1000 3999
Out..
lnL = -112.932741
4000 lfun, 16000 eigenQcodon, 360000 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -146.120093 S = -136.242732 -25.868419
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 12 patterns 1:58
did 12 / 12 patterns 1:58end of tree file.
Time used: 1:58
Model 7: beta
TREE # 1
(1, 16, (((((10, 11, 15, 3, 8, 9), 17, 6), (12, ((13, (18, 19, 20, 21, 4, 5)), 7))), 14), 2)); MP score: 11
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
25
0.079301 0.045894 0.075715 0.104762 0.024285 0.042580 0.043812 0.045465 0.031046 0.028884 0.017546 0.017491 0.078841 0.099096 0.051151 0.090698 0.052632 0.077842 0.065767 0.095496 0.033925 0.052946 0.026950 0.060531 0.056742 0.036309 0.042788 0.049500 0.058427 0.038758 190.597030 1.098046 1.105173
ntime & nrate & np: 30 1 33
Bounds (np=33):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 0.096645
np = 33
lnL0 = -184.569703
Iterating by ming2
Initial: fx= 184.569703
x= 0.07930 0.04589 0.07572 0.10476 0.02428 0.04258 0.04381 0.04546 0.03105 0.02888 0.01755 0.01749 0.07884 0.09910 0.05115 0.09070 0.05263 0.07784 0.06577 0.09550 0.03392 0.05295 0.02695 0.06053 0.05674 0.03631 0.04279 0.04950 0.05843 0.03876 190.59703 1.09805 1.10517
1 h-m-p 0.0000 0.0012 126.8083 ++++ 171.415281 m 0.0012 40 | 1/33
2 h-m-p 0.0000 0.0000 104.9750 ++ 171.395660 m 0.0000 76 | 2/33
3 h-m-p 0.0000 0.0000 38125.4988 ++ 168.194829 m 0.0000 112 | 3/33
4 h-m-p 0.0000 0.0000 674596.4186 ++ 167.732622 m 0.0000 148 | 4/33
5 h-m-p 0.0000 0.0000 3000.9139 ++ 167.565159 m 0.0000 184 | 5/33
6 h-m-p 0.0000 0.0000 2114.6040 ++ 166.921845 m 0.0000 220 | 6/33
7 h-m-p 0.0000 0.0000 4639.7894 ++ 166.062789 m 0.0000 256 | 7/33
8 h-m-p 0.0000 0.0000 2662.3841 ++ 165.479472 m 0.0000 292 | 8/33
9 h-m-p 0.0000 0.0000 28757.8702 ++ 163.860289 m 0.0000 328 | 9/33
10 h-m-p 0.0000 0.0000 20511.3307 ++ 163.228488 m 0.0000 364 | 10/33
11 h-m-p 0.0000 0.0000 76222.4087 ++ 163.003012 m 0.0000 400 | 11/33
12 h-m-p 0.0000 0.0000 765.8455 ++ 162.240070 m 0.0000 436 | 12/33
13 h-m-p 0.0000 0.0000 5637.3722 ++ 161.658575 m 0.0000 472 | 13/33
14 h-m-p 0.0000 0.0000 9084.2432 ++ 161.035083 m 0.0000 508 | 14/33
15 h-m-p 0.0000 0.0000 9016.2921 ++ 160.973736 m 0.0000 544 | 15/33
16 h-m-p 0.0000 0.0000 28753.3919 ++ 160.963973 m 0.0000 580 | 16/33
17 h-m-p 0.0000 0.0001 154.2577 ++ 160.441733 m 0.0001 616 | 17/33
18 h-m-p 0.0000 0.0000 10332.8905 ++ 160.344033 m 0.0000 652 | 18/33
19 h-m-p 0.0000 0.0000 430.3837 ++ 159.787895 m 0.0000 688 | 19/33
20 h-m-p 0.0000 0.0000 1123.9586 ++ 158.569262 m 0.0000 724 | 20/33
21 h-m-p 0.0000 0.0000 9432.5563 ++ 158.528824 m 0.0000 760 | 21/33
22 h-m-p 0.0000 0.0001 286.7822 ++ 157.984591 m 0.0001 796 | 22/33
23 h-m-p 0.0000 0.0002 55.9995 ++ 157.700037 m 0.0002 832 | 23/33
24 h-m-p 0.0000 0.0001 235.1117 ++ 157.343123 m 0.0001 868 | 24/33
25 h-m-p 0.0001 0.0007 6.3135 ++ 157.269647 m 0.0007 904 | 25/33
26 h-m-p 0.0045 0.4014 0.3336 +++YYCCCC 156.673587 5 0.2286 951 | 25/33
27 h-m-p 0.0877 8.0000 0.8694 ++CYYCCC 153.023486 5 1.0233 1005 | 25/33
28 h-m-p 0.2041 1.0204 0.2260 +YYCYCCC 152.390409 6 0.6344 1059 | 25/33
29 h-m-p 1.6000 8.0000 0.0652 ++ 150.849661 m 8.0000 1103 | 25/33
30 h-m-p 0.4229 2.1145 0.2776 CYCCC 150.605658 4 0.7954 1154 | 25/33
31 h-m-p 1.6000 8.0000 0.1245 ++ 149.998114 m 8.0000 1198 | 25/33
32 h-m-p 1.4290 7.1450 0.4957 YCYCCC 149.593628 5 3.3514 1250 | 25/33
33 h-m-p 1.0120 5.0599 1.2205 CCCC 149.334783 3 1.3878 1300 | 25/33
34 h-m-p 1.5999 8.0000 1.0587 ++ 148.734458 m 8.0000 1336 | 25/33
35 h-m-p 1.2567 7.0415 6.7397 ++ 143.916492 m 7.0415 1372 | 25/33
36 h-m-p 0.0821 0.4107 150.5096 -------------C 143.916492 0 0.0000 1421 | 25/33
37 h-m-p 0.0000 0.0000 0.1531 ++ 143.916492 m 0.0000 1457 | 25/33
38 h-m-p 0.0000 0.0000 6.3772
h-m-p: 0.00000000e+00 0.00000000e+00 6.37720275e+00 143.916492
.. | 25/33
39 h-m-p 0.0001 0.0272 15.5181 ++++YYYYYC 142.339941 5 0.0136 1543 | 25/33
40 h-m-p 0.0043 0.0214 11.4115 YCYCCC 141.659124 5 0.0116 1587 | 25/33
41 h-m-p 0.0018 0.0091 12.4231 CYCCC 141.515596 4 0.0034 1630 | 25/33
42 h-m-p 0.0102 0.1806 4.1139 ++YYYYCCC 138.743171 6 0.1556 1676 | 25/33
43 h-m-p 0.0205 0.1023 1.1086 YYCCC 138.721168 4 0.0139 1718 | 25/33
44 h-m-p 0.0517 0.6147 0.2986 +YCYC 137.940515 3 0.2948 1759 | 25/33
45 h-m-p 0.0361 0.1803 0.5667 YCYCYCCC 137.517457 7 0.0949 1814 | 25/33
46 h-m-p 0.2011 1.0054 0.0754 YCCYCCC 137.497969 6 0.3006 1868 | 25/33
47 h-m-p 0.2265 1.6862 0.1000 CYC 137.491520 2 0.0737 1915 | 25/33
48 h-m-p 0.1188 8.0000 0.0620 +CCC 137.484556 2 0.4166 1964 | 25/33
49 h-m-p 0.2343 2.5236 0.1103 YC 137.483456 1 0.1353 2009 | 25/33
50 h-m-p 0.3299 8.0000 0.0452 +CCCC 137.480972 3 1.7484 2060 | 25/33
51 h-m-p 0.7979 6.5241 0.0991 YCYCYC 137.477948 5 1.3133 2111 | 25/33
52 h-m-p 0.2374 1.5738 0.5483 CYCYC 137.472005 4 0.4513 2161 | 25/33
53 h-m-p 0.1451 0.7254 1.3872 YCYYC 137.457854 4 0.4161 2211 | 25/33
54 h-m-p 0.2006 1.0028 1.0579 YCC 137.454748 2 0.0932 2250 | 25/33
55 h-m-p 0.0795 0.3989 1.2402 +YYYCC 137.443975 4 0.2984 2292 | 25/33
56 h-m-p 0.0067 0.0336 4.1199 CCC 137.443705 2 0.0095 2332 | 25/33
57 h-m-p 0.0377 0.1885 0.8617 ++ 137.438135 m 0.1885 2368 | 26/33
58 h-m-p 0.8859 8.0000 0.1834 -CYCC 137.433376 3 0.0304 2419 | 25/33
59 h-m-p 0.0000 0.0000 82834.7225 --YC 137.433256 1 0.0000 2465 | 25/33
60 h-m-p 0.0160 8.0000 0.4417 +++YYC 137.421376 2 0.9204 2506 | 25/33
61 h-m-p 0.2690 1.3448 0.4638 ++ 137.404457 m 1.3448 2550 | 26/33
62 h-m-p 0.0676 2.3241 9.2204 +CCCC 137.349343 3 0.4141 2601 | 26/33
63 h-m-p 0.6070 3.0351 5.8081 +CYC 137.192108 2 2.4779 2641 | 26/33
64 h-m-p 0.3486 1.7429 1.8671 +CC 137.158650 1 1.3070 2680 | 26/33
65 h-m-p 0.1754 0.8771 0.9375 ++ 137.154048 m 0.8771 2716 | 26/33
66 h-m-p 0.0000 0.0000 1.1795
h-m-p: 0.00000000e+00 0.00000000e+00 1.17950109e+00 137.154048
.. | 26/33
67 h-m-p 0.0005 0.2707 22.5117 ---YCYC 137.153675 3 0.0000 2799 | 26/33
68 h-m-p 0.0005 0.2641 0.3531 ++CC 137.153210 1 0.0074 2839 | 26/33
69 h-m-p 0.0369 8.0000 0.0708 YC 137.153005 1 0.0838 2883 | 25/33
70 h-m-p 0.0038 1.8856 5.7514 ----Y 137.153005 0 0.0000 2930 | 25/33
71 h-m-p 0.0006 0.0527 0.0225 +++YC 137.152999 1 0.0239 2970 | 26/33
72 h-m-p 0.0160 8.0000 0.0730 +++CC 137.152243 1 1.2466 3019 | 25/33
73 h-m-p 0.0000 0.0003 7008.1550 YC 137.152216 1 0.0000 3063 | 25/33
74 h-m-p 0.0189 8.0000 0.6549 +++++ 137.068180 m 8.0000 3102 | 25/33
75 h-m-p 0.2315 1.9845 22.6300 YCCCC 136.975499 4 0.4970 3153 | 25/33
76 h-m-p 1.6000 8.0000 0.0151 CCC 136.972648 2 1.3043 3193 | 25/33
77 h-m-p 0.1465 8.0000 0.1341 ++CC 136.971963 1 3.1308 3241 | 25/33
78 h-m-p 1.6000 8.0000 0.1820 +C 136.969837 0 6.3275 3286 | 25/33
79 h-m-p 1.6000 8.0000 0.4051 ++ 136.930151 m 8.0000 3330 | 25/33
80 h-m-p 0.0143 0.3955 227.1498 ++YYYCCC 136.532577 5 0.2040 3383 | 25/33
81 h-m-p 1.5829 7.9147 5.8249 CYCC 136.489047 3 1.0957 3424 | 25/33
82 h-m-p 1.6000 8.0000 0.2991 CCCC 136.476089 3 2.6140 3466 | 25/33
83 h-m-p 1.6000 8.0000 0.3500 ++ 136.443771 m 8.0000 3510 | 25/33
84 h-m-p 0.7648 8.0000 3.6613 +YYYCC 136.280703 4 2.9316 3560 | 25/33
85 h-m-p 0.1780 1.1460 60.2897 +YYYYYCYYC 134.799059 8 1.0100 3607 | 25/33
86 h-m-p 0.0005 0.0027 3390.4526 YYYCCCCCC 134.780895 8 0.0007 3656 | 25/33
87 h-m-p 0.0077 0.0383 155.6630 YYCCCCCC 134.756627 7 0.0104 3704 | 25/33
88 h-m-p 0.0970 0.8299 16.7331 +YYYYYYYCCC 134.164719 10 0.4168 3753 | 25/33
89 h-m-p 0.0672 0.3359 35.6802 CYCCCC 133.640946 5 0.1328 3798 | 25/33
90 h-m-p 0.0608 0.3351 77.9021 +YYYYCYYCCC 129.023951 10 0.2802 3848 | 25/33
91 h-m-p 0.0006 0.0031 1377.5416 CYCYCCC 128.811037 6 0.0011 3894 | 25/33
92 h-m-p 0.0617 0.3083 8.8350 YCYCCCC 127.754773 6 0.1659 3940 | 25/33
93 h-m-p 0.3654 1.8270 1.6218 YYCCC 126.150801 4 0.6167 3982 | 25/33
94 h-m-p 0.2170 1.0849 1.3162 +YCYCCC 122.847685 5 0.6578 4027 | 25/33
95 h-m-p 0.1903 0.9516 0.5448 CCCCC 122.592016 4 0.2155 4071 | 25/33
96 h-m-p 0.4177 4.4190 0.2810 YYCCC 122.201751 4 0.6266 4121 | 25/33
97 h-m-p 1.6000 8.0000 0.0782 YCCC 121.443969 3 3.0973 4170 | 25/33
98 h-m-p 0.9373 4.9955 0.2583 CYC 121.281179 2 1.0383 4217 | 25/33
99 h-m-p 1.6000 8.0000 0.1377 YCCC 121.250657 3 1.1133 4266 | 25/33
100 h-m-p 1.6000 8.0000 0.0387 YC 121.240657 1 1.2380 4311 | 25/33
101 h-m-p 1.6000 8.0000 0.0050 CC 121.240076 1 1.5031 4357 | 25/33
102 h-m-p 1.6000 8.0000 0.0011 C 121.240039 0 1.4252 4401 | 25/33
103 h-m-p 1.6000 8.0000 0.0006 YC 121.240027 1 3.8399 4446 | 25/33
104 h-m-p 1.6000 8.0000 0.0004 +YC 121.239991 1 4.7453 4492 | 25/33
105 h-m-p 1.6000 8.0000 0.0007 C 121.239978 0 1.5729 4536 | 25/33
106 h-m-p 1.6000 8.0000 0.0002 C 121.239977 0 1.5123 4580 | 25/33
107 h-m-p 1.6000 8.0000 0.0000 ++ 121.239976 m 8.0000 4624 | 25/33
108 h-m-p 0.0160 8.0000 0.0060 +++YC 121.239715 1 1.8236 4672 | 25/33
109 h-m-p 1.6000 8.0000 0.0015 ++ 121.238723 m 8.0000 4716 | 25/33
110 h-m-p 1.0400 5.2001 0.0017 +CYC 121.238504 2 3.3669 4764 | 25/33
111 h-m-p 1.6000 8.0000 0.0008 YC 121.238493 1 1.1062 4809 | 25/33
112 h-m-p 1.6000 8.0000 0.0002 ++ 121.238492 m 8.0000 4853 | 25/33
113 h-m-p 1.0062 5.0311 0.0006 C 121.238491 0 1.5712 4897 | 25/33
114 h-m-p 0.7211 3.6055 0.0003 ++ 121.238491 m 3.6055 4941 | 26/33
115 h-m-p 1.6000 8.0000 0.0002 -Y 121.238491 0 0.0682 4986 | 26/33
116 h-m-p 0.2643 8.0000 0.0001 +Y 121.238491 0 0.8943 5030 | 26/33
117 h-m-p 1.6000 8.0000 0.0000 Y 121.238491 0 1.6000 5073 | 26/33
118 h-m-p 1.6000 8.0000 0.0000 C 121.238491 0 2.1815 5116 | 26/33
119 h-m-p 1.6000 8.0000 0.0000 -----C 121.238491 0 0.0004 5164
Out..
lnL = -121.238491
5165 lfun, 56815 eigenQcodon, 1549500 P(t)
end of tree file.
Time used: 8:29
Model 8: beta&w>1
TREE # 1
(1, 16, (((((10, 11, 15, 3, 8, 9), 17, 6), (12, ((13, (18, 19, 20, 21, 4, 5)), 7))), 14), 2)); MP score: 11
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
25
0.029953 0.019795 0.028849 0.106479 0.045430 0.048186 0.068152 0.089865 0.025510 0.084329 0.065733 0.020405 0.064351 0.070337 0.038358 0.099058 0.024853 0.088769 0.079224 0.026736 0.081841 0.025955 0.081556 0.091217 0.067885 0.050849 0.020321 0.040664 0.051438 0.095345 1.492311 0.900000 1.192248 1.572231 1.300000
ntime & nrate & np: 30 2 35
Bounds (np=35):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 5.508214
np = 35
lnL0 = -161.204145
Iterating by ming2
Initial: fx= 161.204145
x= 0.02995 0.01979 0.02885 0.10648 0.04543 0.04819 0.06815 0.08987 0.02551 0.08433 0.06573 0.02040 0.06435 0.07034 0.03836 0.09906 0.02485 0.08877 0.07922 0.02674 0.08184 0.02595 0.08156 0.09122 0.06788 0.05085 0.02032 0.04066 0.05144 0.09535 1.49231 0.90000 1.19225 1.57223 1.30000
1 h-m-p 0.0000 0.0015 234.7697 ++++ 138.812584 m 0.0015 42 | 1/35
2 h-m-p 0.0000 0.0000 75.1278 ++ 138.783680 m 0.0000 80 | 2/35
3 h-m-p 0.0000 0.0000 18902.9001 ++ 137.075911 m 0.0000 118 | 3/35
4 h-m-p 0.0000 0.0000 96.7457 ++ 136.942018 m 0.0000 156 | 4/35
5 h-m-p 0.0000 0.0000 1026.6992 ++ 136.712661 m 0.0000 194 | 5/35
6 h-m-p 0.0000 0.0000 1956.4888 ++ 136.518673 m 0.0000 232 | 6/35
7 h-m-p 0.0000 0.0000 11726.1805 ++ 134.140910 m 0.0000 270 | 7/35
8 h-m-p 0.0000 0.0000 60588.3665 ++ 133.011688 m 0.0000 308 | 8/35
9 h-m-p 0.0000 0.0000 39786.9487 ++ 132.570777 m 0.0000 346 | 9/35
10 h-m-p 0.0000 0.0000 1881.8303 ++ 130.787729 m 0.0000 384 | 10/35
11 h-m-p 0.0000 0.0000 14145.5666 ++ 129.096141 m 0.0000 422 | 11/35
12 h-m-p 0.0000 0.0000 22788.1062 ++ 128.649226 m 0.0000 460 | 12/35
13 h-m-p 0.0000 0.0000 2150.2200 ++ 127.992689 m 0.0000 498 | 13/35
14 h-m-p 0.0000 0.0000 1925.0319 ++ 127.752096 m 0.0000 536 | 14/35
15 h-m-p 0.0000 0.0000 789.8115 ++ 127.408174 m 0.0000 574 | 15/35
16 h-m-p 0.0000 0.0000 945.2147 ++ 125.710683 m 0.0000 612 | 16/35
17 h-m-p 0.0000 0.0000 5571.7930 ++ 125.588447 m 0.0000 650 | 17/35
18 h-m-p 0.0000 0.0000 568.3241 ++ 125.448189 m 0.0000 688 | 18/35
19 h-m-p 0.0000 0.0000 530.4278 ++ 125.396696 m 0.0000 726 | 19/35
20 h-m-p 0.0000 0.0000 438.6103 ++ 125.181760 m 0.0000 764 | 20/35
21 h-m-p 0.0000 0.0000 419.5484 ++ 124.739757 m 0.0000 802 | 21/35
22 h-m-p 0.0000 0.0000 387.3492 ++ 124.649756 m 0.0000 840 | 22/35
23 h-m-p 0.0000 0.0001 271.4251 ++ 124.134581 m 0.0001 878 | 23/35
24 h-m-p 0.0001 0.0004 61.6176 ++ 123.570037 m 0.0004 916 | 24/35
25 h-m-p 0.0001 0.0003 27.4460 ++ 123.462345 m 0.0003 954 | 25/35
26 h-m-p 0.0018 0.8942 3.6872 +++YCCCC 121.874442 4 0.2417 1002 | 25/35
27 h-m-p 0.0572 0.2859 3.6863 +YCYCCC 120.798959 5 0.1717 1049 | 25/35
28 h-m-p 0.1020 0.5099 1.6912 ++ 119.009137 m 0.5099 1087 | 26/35
29 h-m-p 0.1453 0.7264 1.3661 YCCCCC 118.710155 5 0.1539 1134 | 26/35
30 h-m-p 0.2975 6.1959 0.7067 +CCCC 118.272360 3 1.1379 1179 | 26/35
31 h-m-p 0.9520 7.4837 0.8447 +YCYC 117.409107 3 2.8451 1231 | 26/35
32 h-m-p 0.5494 2.7469 0.9346 +YYYCYCYYCC 116.556629 10 2.3838 1293 | 26/35
33 h-m-p 1.1615 5.8076 0.7659 CYCC 116.146414 3 1.2978 1345 | 26/35
34 h-m-p 0.3493 1.7465 1.8612 +YYCYCYCCC 115.652817 8 1.1600 1405 | 26/35
35 h-m-p 0.4627 2.3137 2.3642 CYCC 115.526610 3 0.4450 1448 | 26/35
36 h-m-p 0.4833 8.0000 2.1771 +YYCCC 115.048981 4 2.3318 1493 | 26/35
37 h-m-p 1.6000 8.0000 3.0155 CYCCC 114.726957 4 1.4273 1538 | 26/35
38 h-m-p 1.3864 8.0000 3.1046 +YCCC 114.375318 3 3.5999 1582 | 26/35
39 h-m-p 1.6000 8.0000 2.5666 CYCC 114.296880 3 2.1153 1625 | 26/35
40 h-m-p 1.6000 8.0000 2.5992 YCCC 114.251549 3 3.1220 1668 | 26/35
41 h-m-p 1.6000 8.0000 1.6562 CYC 114.245940 2 1.7020 1709 | 26/35
42 h-m-p 1.6000 8.0000 0.8586 YC 114.242857 1 3.7374 1748 | 26/35
43 h-m-p 1.6000 8.0000 0.1192 +YC 114.238138 1 7.1018 1797 | 26/35
44 h-m-p 1.6000 8.0000 0.2335 YCC 114.233237 2 2.9064 1847 | 26/35
45 h-m-p 1.3763 8.0000 0.4932 CCC 114.231810 2 2.0251 1898 | 26/35
46 h-m-p 1.6000 8.0000 0.2413 +YC 114.231353 1 4.1248 1947 | 26/35
47 h-m-p 1.6000 8.0000 0.1988 ++ 114.229574 m 8.0000 1994 | 26/35
48 h-m-p 1.4277 8.0000 1.1137 CCC 114.227936 2 2.3938 2045 | 26/35
49 h-m-p 1.6000 8.0000 0.2131 ++ 114.217800 m 8.0000 2083 | 26/35
50 h-m-p 0.4111 2.0556 2.0382 +YCYYCCC 114.196282 6 1.2770 2141 | 26/35
51 h-m-p 0.7243 4.7978 3.5937 +YCYYCYYCYC 114.145435 9 4.3580 2193 | 26/35
52 h-m-p 0.0265 0.1326 96.3727 +YCCYCC 114.123526 5 0.0771 2240 | 26/35
53 h-m-p 0.0044 0.0315 1706.7238 +YYCYC 114.064569 4 0.0204 2284 | 26/35
54 h-m-p 0.0888 0.4439 14.7593 ++ 114.041114 m 0.4439 2322 | 27/35
55 h-m-p 0.2238 2.6949 29.2782 YCCC 113.955153 3 0.4146 2365 | 27/35
56 h-m-p 0.3194 3.4236 38.0058 ---------------.. | 27/35
57 h-m-p 0.0003 0.1354 2.8298 +++YCCC 113.904500 3 0.0122 2462 | 27/35
58 h-m-p 0.0496 0.2743 0.6953 YYCC 113.895464 3 0.0375 2504 | 27/35
59 h-m-p 0.1610 2.0828 0.1617 YCC 113.893999 2 0.1160 2553 | 27/35
60 h-m-p 0.0426 8.0000 0.4402 ++YCC 113.862989 2 1.1151 2604 | 27/35
61 h-m-p 1.0990 8.0000 0.4467 CCCC 113.819544 3 1.6406 2656 | 27/35
62 h-m-p 1.6000 8.0000 0.0868 YCC 113.816268 2 1.0954 2705 | 27/35
63 h-m-p 1.4714 8.0000 0.0646 +YCC 113.809568 2 4.7898 2755 | 27/35
64 h-m-p 1.6000 8.0000 0.0338 YC 113.809450 1 0.8915 2802 | 27/35
65 h-m-p 1.6000 8.0000 0.0060 ++ 113.809261 m 8.0000 2848 | 27/35
66 h-m-p 0.3439 8.0000 0.1394 ++CC 113.807521 1 5.7073 2898 | 27/35
67 h-m-p 1.6000 8.0000 0.4865 ++ 113.795347 m 8.0000 2944 | 27/35
68 h-m-p 1.6000 8.0000 1.4821 CCC 113.793674 2 1.3089 2994 | 27/35
69 h-m-p 1.6000 8.0000 0.0642 C 113.793611 0 1.6564 3032 | 27/35
70 h-m-p 1.6000 8.0000 0.0301 ++ 113.793185 m 8.0000 3078 | 27/35
71 h-m-p 0.2024 8.0000 1.1896 ++YC 113.789570 1 2.6350 3127 | 27/35
72 h-m-p 1.6000 8.0000 1.3777 ++ 113.756712 m 8.0000 3165 | 27/35
73 h-m-p 0.0890 7.3073 123.8829 +++CYCCC 113.351650 4 4.1467 3213 | 27/35
74 h-m-p 0.9211 4.6057 83.9393 YCCC 113.285870 3 0.4758 3256 | 27/35
75 h-m-p 1.6000 8.0000 22.9631 ++ 113.178503 m 8.0000 3294 | 27/35
76 h-m-p 0.1118 0.5591 283.7659 ++ 113.108233 m 0.5591 3332 | 28/35
77 h-m-p 0.0748 0.3740 285.2463 --------------.. | 28/35
78 h-m-p 0.0041 2.0310 0.4064 YC 113.107408 1 0.0100 3421 | 28/35
79 h-m-p 0.0138 1.8861 0.2961 ++CCCC 113.094127 3 0.3761 3474 | 28/35
80 h-m-p 1.6000 8.0000 0.0343 +YC 113.091489 1 4.3879 3521 | 28/35
81 h-m-p 0.4441 8.0000 0.3392 +CCC 113.080089 2 2.0321 3571 | 28/35
82 h-m-p 1.4428 8.0000 0.4777 CCC 113.066870 2 1.6510 3620 | 28/35
83 h-m-p 1.6000 8.0000 0.0583 YC 113.066593 1 0.8125 3666 | 28/35
84 h-m-p 1.6000 8.0000 0.0104 CC 113.066553 1 1.9690 3713 | 28/35
85 h-m-p 1.5291 8.0000 0.0134 ++ 113.066119 m 8.0000 3758 | 28/35
86 h-m-p 0.0650 8.0000 1.6485 ++CCC 113.060384 2 1.5467 3809 | 28/35
87 h-m-p 1.6000 8.0000 0.7018 CC 113.056026 1 2.5229 3849 | 28/35
88 h-m-p 1.6000 8.0000 0.0923 YC 113.056004 1 1.0230 3895 | 28/35
89 h-m-p 1.6000 8.0000 0.0079 ++ 113.055954 m 8.0000 3940 | 28/35
90 h-m-p 0.0706 8.0000 0.8982 ++YC 113.054722 1 2.1655 3988 | 28/35
91 h-m-p 1.6000 8.0000 0.6508 ++ 113.043977 m 8.0000 4033 | 28/35
92 h-m-p 0.0541 3.1023 96.1440 ++YYCCC 112.970145 4 0.6767 4086 | 28/35
93 h-m-p 1.6000 8.0000 0.6788 YC 112.969120 1 0.9893 4125 | 28/35
94 h-m-p 0.9738 8.0000 0.6896 +YC 112.968731 1 2.9354 4172 | 28/35
95 h-m-p 1.6000 8.0000 0.1202 ++ 112.964531 m 8.0000 4217 | 28/35
96 h-m-p 0.1107 8.0000 8.6912 ++YYCC 112.945761 3 1.3568 4268 | 28/35
97 h-m-p 1.6000 8.0000 5.7757 CC 112.939801 1 1.4329 4308 | 28/35
98 h-m-p 1.6000 8.0000 0.9130 YC 112.939665 1 0.8123 4347 | 28/35
99 h-m-p 1.6000 8.0000 0.0370 YC 112.939664 1 0.8914 4393 | 28/35
100 h-m-p 0.9307 8.0000 0.0354 Y 112.939663 0 0.7157 4438 | 28/35
101 h-m-p 1.6000 8.0000 0.0007 Y 112.939663 0 0.9366 4483 | 28/35
102 h-m-p 1.6000 8.0000 0.0001 Y 112.939663 0 0.9342 4528 | 28/35
103 h-m-p 1.6000 8.0000 0.0000 -Y 112.939663 0 0.1000 4574
Out..
lnL = -112.939663
4575 lfun, 54900 eigenQcodon, 1509750 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -145.764582 S = -136.076289 -22.545725
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 12 patterns 14:52
did 12 / 12 patterns 14:52end of tree file.
Time used: 14:52
The loglikelihoods for models M1, M2, M7 and M8 are -122.888608 -112.932741 -121.238491 -112.939663 respectively
The loglikelihood for model M2a is significantly different from that for M1a. Twice the difference is 19.911734
The loglikelihood for model M8 is significantly different from that for M7. Twice the difference is 16.597656
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
681_NA_AFG25752_1_NA_NA_Rat_Murine_coronavirus ---------------------------------MAALGHKAKLAAVFIGPFIVACMLGIS
8190_NA_AFG25762_1_NA_NA_Rat_Murine_coronavirus ---------------------------------MAALGHKAKLAAVFIGPFIVACMLGIS
A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus -------------------------------------------------------MLGIG
JHM_WU_NS4_AFO11518_1_1947_08_14_USA_Unknown_Murine_coronavirus ---------------------------------MALIGPKTTIAAVFIGPFLVACMLGIG
JHM_WU_Dns2_NS4_AFO11508_1_1947_08_14_USA_Unknown_Murine_coronavirus ---------------------------------MALIGPKTTIAAVFIGPFLVACMLGIG
MHV_2_NA_AAF19387_1_NA_NA_Unknown_Murine_coronavirus -------------------------------------------------------MLGIG
MHV_1_NA_ACN89734_1_NA_USA_Mouse_Murine_coronavirus ---------------------------------MAIIGPKTTIAAVFIGPFIVACMLGIG
MHV_BHKR_lab_USA_icA59_17Cl1_2012_NS4_AGT17728_1_2012_10_25_USA_Mouse_Murine_coronavirus MRIDYHSPCRKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGPFIVACMLGIG
MHV_BHKR_lab_USA_icA59_L94P_2012_NS4_AGT17739_1_2012_10_25_USA_Mouse_Murine_coronavirus MRIDYHSPCRKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGPFIVACMLGIG
MHV_BHKR_lab_USA_icA59_ns2M_2012_NS4_AGT17750_1_2012_10_25_USA_Mouse_Murine_coronavirus MRIDYHSPCRKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGPFIVACMLGIG
MHV_BHKR_lab_USA_infA59_H126A_2012_NS4_AGT17717_1_2012_10_25_USA_Mouse_Murine_coronavirus MRIDYHSLSWKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGPFIVACMLGIG
MHV_MI_ns4_BAJ04697_1_1994_Australia_Mouse_Murine_coronavirus ---------------------------------MAVLGPKATFAAVFIGPFIVACMLGIG
MHV_JHM_IA_NA_ACN89764_1_NA_USA_Mouse_Murine_coronavirus ---------------------------------MALIGPKTTIAAVFIGPFLVACMLGIG
MHV_S_3239_17_NA_AFD97609_1_NA_NA_Unknown_Murine_coronavirus ---------------------------------MAVLGPKATLAAVFIGPFIVACMLGIG
ML_10_ORF4B_AAF69345_1_NA_NA_Unknown_Murine_coronavirus -------------------------------------------------------MLGIG
Parker_NA_YP_003029849_1_NA_NA_Rat_Murine_coronavirus ---------------------------------MAALGHKAKLAAVFIGPFIVACMLGIS
Penn_97_1_ORF4B_AAF69340_1_NA_NA_Unknown_Murine_coronavirus -------------------------------------------------------MLGIG
RJHM_A_NA_ACN89695_1_NA_USA_Mouse_Murine_coronavirus ---------------------------------MALIGPKTTIAAVFIGPFLVACMLGIG
SA59_RJHM_NA_ACN89732_1_NA_USA_Mouse_Murine_coronavirus ---------------------------------MALIGPKTTIAAVFIGPFLVACMLGIG
UNKNOWN_AC_000192_NA_YP_209234_1_NA_NA_Unknown_Murine_coronavirus ---------------------------------MALIGPKTTIAAVFIGPFLVACMLGIG
repA59_RJHM_NA_ACN89715_1_NA_USA_Mouse_Murine_coronavirus ---------------------------------MALIGPKTTIAAVFIGPFLVACMLGIG
****.
681_NA_AFG25752_1_NA_NA_Rat_Murine_coronavirus LVYLYQLQNQIFHVNNTIRVTGKPAKLYYSLSTSVTPVATTLDGTTYTLIRPTSSYTRVY
8190_NA_AFG25762_1_NA_NA_Rat_Murine_coronavirus LVYLYQLQVQIFHVNNTIRVTGKPATVSYTLSTPVTPVATTLDGTTYTLIRPTSSYTRVY
A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus LVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSATTLDGTTYTLIRPTSSYTRVY
JHM_WU_NS4_AFO11518_1_1947_08_14_USA_Unknown_Murine_coronavirus LVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVATTLDGTTYTLIRPTSSYTRVY
JHM_WU_Dns2_NS4_AFO11508_1_1947_08_14_USA_Unknown_Murine_coronavirus LVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVATTLDGTTYTLIRPTSSYTRVY
MHV_2_NA_AAF19387_1_NA_NA_Unknown_Murine_coronavirus LVYSLQLQV---------------------------------------------------
MHV_1_NA_ACN89734_1_NA_USA_Mouse_Murine_coronavirus LVYLLQLQVQIFHVNDTIRVTGKPATVSYTISTPVTPSATTLDGTTYTLIRPTSSYTRVH
MHV_BHKR_lab_USA_icA59_17Cl1_2012_NS4_AGT17728_1_2012_10_25_USA_Mouse_Murine_coronavirus LVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSATTLDGTTYTLIRPTSSYTRVY
MHV_BHKR_lab_USA_icA59_L94P_2012_NS4_AGT17739_1_2012_10_25_USA_Mouse_Murine_coronavirus LVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSATTLDGTTYTLIRPTSSYTRVY
MHV_BHKR_lab_USA_icA59_ns2M_2012_NS4_AGT17750_1_2012_10_25_USA_Mouse_Murine_coronavirus LVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSATTLDGTTYTLIRPTSSYTRVY
MHV_BHKR_lab_USA_infA59_H126A_2012_NS4_AGT17717_1_2012_10_25_USA_Mouse_Murine_coronavirus LVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSATTLDGTTYTLIRPTSSYTRVY
MHV_MI_ns4_BAJ04697_1_1994_Australia_Mouse_Murine_coronavirus LVYLYQVQVKIFHVDDTLRVTGKPATVSYTTSTPVTPSATTLDGTTYTLIRPTSSYTRVY
MHV_JHM_IA_NA_ACN89764_1_NA_USA_Mouse_Murine_coronavirus LVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVATTLDGTTYTLIRPTSSYTRVY
MHV_S_3239_17_NA_AFD97609_1_NA_NA_Unknown_Murine_coronavirus LVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSATTLDGTTYTLIRPTSSYTRVY
ML_10_ORF4B_AAF69345_1_NA_NA_Unknown_Murine_coronavirus LVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSATTLDGTTYTLIRPTSSYTRVY
Parker_NA_YP_003029849_1_NA_NA_Rat_Murine_coronavirus LVYLYQLQVQIFHVNNTIRVTGKPATVSYTLSTPVTPVATTLDGTTYTLIRPTSSYTRVY
Penn_97_1_ORF4B_AAF69340_1_NA_NA_Unknown_Murine_coronavirus LVYSLQLQV---------------------------------------------------
RJHM_A_NA_ACN89695_1_NA_USA_Mouse_Murine_coronavirus LVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVATTLDGTTYTLIRPTSSYTRVY
SA59_RJHM_NA_ACN89732_1_NA_USA_Mouse_Murine_coronavirus LVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVATTLDGTTYTLIRPTSSYTRVY
UNKNOWN_AC_000192_NA_YP_209234_1_NA_NA_Unknown_Murine_coronavirus LVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVATTLDGTTYTLIRPTSSYTRVY
repA59_RJHM_NA_ACN89715_1_NA_USA_Mouse_Murine_coronavirus LVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVATTLDGTTYTLIRPTSSYTRVY
*** *:*
681_NA_AFG25752_1_NA_NA_Rat_Murine_coronavirus LGKTRGFDTSTFGPKVLNYITSSKPHLNSGRPYTFRHMPKYMKGLV------
8190_NA_AFG25762_1_NA_NA_Rat_Murine_coronavirus LGKTRGFDTSTFGPKVLNYITSSKPHLNSGRPYTFRHMPKYMTPSATWRFGM
A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus LGTPRGFDYSTFGPKTLDYVTNLNLILILVVHILLRHCPGI-----------
JHM_WU_NS4_AFO11518_1_1947_08_14_USA_Unknown_Murine_coronavirus LGSSRGFDTSTFGPKTLDYITSSKPHLNSGRPYTLRHLPKYMTPPATWRFGL
JHM_WU_Dns2_NS4_AFO11508_1_1947_08_14_USA_Unknown_Murine_coronavirus LGSSRGFDTSTFGPKTLDYITSSKPHLNSGRPYTLRHLPKYMTPPATWRFGL
MHV_2_NA_AAF19387_1_NA_NA_Unknown_Murine_coronavirus ----------------------------------------------------
MHV_1_NA_ACN89734_1_NA_USA_Mouse_Murine_coronavirus LGSPRGFDTSTFGPKTLDYTTSSKPHLNSGRPYTLRHLPKYMTPPAIWRFGM
MHV_BHKR_lab_USA_icA59_17Cl1_2012_NS4_AGT17728_1_2012_10_25_USA_Mouse_Murine_coronavirus LGTPRGFDYSTFGPKTLDYVTNLNLILILVVHILLRHCPGI-----------
MHV_BHKR_lab_USA_icA59_L94P_2012_NS4_AGT17739_1_2012_10_25_USA_Mouse_Murine_coronavirus LGTPRGFDYSTFGPKTLDYVTNLNLILILVVHILLRHCPGI-----------
MHV_BHKR_lab_USA_icA59_ns2M_2012_NS4_AGT17750_1_2012_10_25_USA_Mouse_Murine_coronavirus LGTPRGFDYSTFGPKTLDYVTNLNLILILVVHILLRHCPGI-----------
MHV_BHKR_lab_USA_infA59_H126A_2012_NS4_AGT17717_1_2012_10_25_USA_Mouse_Murine_coronavirus LGTPRGFDYSTFGPKTLDYVTNLNLILILVVHILLRHCPGI-----------
MHV_MI_ns4_BAJ04697_1_1994_Australia_Mouse_Murine_coronavirus LGSPRGFDTSTFGPKTLDYITSSKPHLNSGRPYSLKALPRHMRPPATWRYGM
MHV_JHM_IA_NA_ACN89764_1_NA_USA_Mouse_Murine_coronavirus LGSSRGFDTSTFGPKTLDYITSSKPHLNSGRPYTLRHLPKYMTPPATWRFGM
MHV_S_3239_17_NA_AFD97609_1_NA_NA_Unknown_Murine_coronavirus LGKTRGFDTSTFGPKVLDYITSSKPHLNSGRPYSLSC---------------
ML_10_ORF4B_AAF69345_1_NA_NA_Unknown_Murine_coronavirus LGTPRGFDYSTFGPKTLDYVTNLNLILILVVHILLRHCPGI-----------
Parker_NA_YP_003029849_1_NA_NA_Rat_Murine_coronavirus LGKTRGFDTSTFGPKVLNYITSSKPHLNSGRPYTFRHMPKYMKGLV------
Penn_97_1_ORF4B_AAF69340_1_NA_NA_Unknown_Murine_coronavirus ----------------------------------------------------
RJHM_A_NA_ACN89695_1_NA_USA_Mouse_Murine_coronavirus LGSSRGFDTSTFGPKTLDYITSSKPHLNSGRPYTLRHLPKYMTPPATWRFGL
SA59_RJHM_NA_ACN89732_1_NA_USA_Mouse_Murine_coronavirus LGSSRGFDTSTFGPKTLDYITSSKPHLNSGRPYTLRHLPKYMTPPATWRFGL
UNKNOWN_AC_000192_NA_YP_209234_1_NA_NA_Unknown_Murine_coronavirus LGSSRGFDTSTFGPKTLDYITSSKPHLNSGRPYTLRHLPKYMTPPATWRFGL
repA59_RJHM_NA_ACN89715_1_NA_USA_Mouse_Murine_coronavirus LGSSRGFDTSTFGPKTLDYITSSKPHLNSGRPYTLRHLPKYMTPPATWRFGL
>681_NA_AFG25752_1_NA_NA_Rat_Murine_coronavirus ---------------------------------------------------------------------------------------------------ATGGCCGCGTTAGGTCATAAGGCTAAATTGGCTGCTGTCTTTATTGGTCCATTTATTGTAGCATGTATGCTAGGCATCAGCCTAGTTTATTTATATCAATTGCAAAACCAAATTTTTCATGTTAATAATACCATACGTGTGACTGGCAAGCCAGCCAAATTATATTATAGTTTAAGTACATCAGTAACGCCAGTTGCAACAACGCTCGACGGTACTACGTATACTTTAATTAGACCCACGAGCTCTTACACAAGAGTTTATCTTGGTAAAACCAGAGGGTTTGATACTAGTACGTTTGGCCCAAAGGTGTTAAATTATATTACTAGTTCTAAACCTCATCTTAATTCTGGTCGTCCATACACCTTTCGGCATATGCCCAAGTATATGAAAGGCTTGGTG------------------ >8190_NA_AFG25762_1_NA_NA_Rat_Murine_coronavirus ---------------------------------------------------------------------------------------------------ATGGCCGCGTTAGGTCATAAGGCTAAATTGGCTGCTGTCTTTATTGGTCCATTTATTGTAGCATGTATGCTAGGCATCAGCCTAGTTTATTTATATCAATTGCAAGTGCAAATTTTTCATGTTAATAATACCATACGTGTGACTGGCAAGCCAGCCACTGTGTCTTATACTTTAAGTACACCAGTAACGCCAGTTGCAACAACGCTCGACGGTACTACGTATACTTTAATTAGACCCACGAGCTCTTATACAAGAGTTTATCTTGGTAAAACCAGAGGGTTTGATACTAGTACGTTTGGCCCAAAGGTGCTAAATTATATTACTAGTTCTAAACCTCATCTTAATTCTGGTCGTCCATACACCTTTCGGCATATGCCCAAGTATATGACACCATCAGCTACATGGAGATTTGGCATG >A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCTAGGCATTGGCCTAGTTTATTTATTGCAATTGCAAGTTCAAATTTTTCATGTTAAGGATACCATACGTGTGACTGGCAAGCCAGCCACTGTGTCTTATACTACAAGTACACCAGTAACACCGAGCGCGACGACGCTCGATGGTACTACGTATACTTTAATTAGACCCACTAGCTCTTATACAAGAGTTTATCTTGGTACTCCAAGAGGTTTTGATTATAGTACATTTGGGCCTAAGACCCTAGATTATGTTACTAATCTAAACCTCATCTTAATTCTGGTCGTCCATATACTTTTAAGGCATTGTCCAGGCATA--------------------------------- >JHM_WU_NS4_AFO11518_1_1947_08_14_USA_Unknown_Murine_coronavirus ---------------------------------------------------------------------------------------------------ATGGCCCTCATCGGTCCCAAGACTACTATTGCTGCTGTCTTTATTGGTCCATTTCTAGTAGCATGTATGCTAGGCATTGGCCTAGTTTATTTATTGCAATTGCAAGTTCAAATTTTTCATGTTAAGGATACCATACGCGTGACTGGCAAGCCAGCCACTGTGTCTTATACTACAAGTACACCAGTAACGCCGGTTGCAACTACGCTCGACGGTACTACGTATACTTTAATTAGACCCACCAGCTCTTATACAAGAGTCTACCTTGGTAGTTCAAGAGGTTTTGATACTAGTACATTTGGTCCTAAGACTCTAGATTATATTACTAGTTCTAAACCTCATCTTAATTCTGGCCGTCCATACACACTTAGGCACTTGCCGAAGTATATGACACCACCAGCTACATGGAGATTTGGCTTG >JHM_WU_Dns2_NS4_AFO11508_1_1947_08_14_USA_Unknown_Murine_coronavirus ---------------------------------------------------------------------------------------------------ATGGCCCTCATCGGTCCCAAGACTACTATTGCTGCTGTCTTTATTGGTCCATTTCTAGTAGCATGTATGCTAGGCATTGGCCTAGTTTATTTATTGCAATTGCAAGTTCAAATTTTTCATGTTAAGGATACCATACGCGTGACTGGCAAGCCAGCCACTGTGTCTTATACTACAAGTACACCAGTAACGCCGGTTGCAACTACGCTCGACGGTACTACGTATACTTTAATTAGACCCACCAGCTCTTATACAAGAGTCTACCTTGGTAGTTCAAGAGGTTTTGATACTAGTACATTTGGTCCTAAGACTCTAGATTATATTACTAGTTCTAAACCTCATCTTAATTCTGGCCGTCCATACACACTTAGGCACTTGCCGAAGTATATGACACCACCAGCTACATGGAGATTTGGCTTG >MHV_2_NA_AAF19387_1_NA_NA_Unknown_Murine_coronavirus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCTAGGCATTGGCCTAGTTTATTCATTGCAATTGCAAGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >MHV_1_NA_ACN89734_1_NA_USA_Mouse_Murine_coronavirus ---------------------------------------------------------------------------------------------------ATGGCCATTATAGGTCCTAAGACAACAATTGCTGCTGTCTTTATTGGTCCATTTATTGTAGCATGTATGCTAGGCATTGGCCTAGTTTATTTATTGCAATTGCAAGTTCAAATTTTTCATGTTAATGATACCATACGTGTGACTGGCAAGCCAGCCACTGTGTCTTATACTATAAGTACACCAGTAACACCGAGCGCGACGACGCTCGACGGTACTACGTATACTTTAATTAGACCCACTAGCTCTTATACAAGAGTCCACCTTGGTAGTCCAAGAGGTTTTGATACTAGTACATTTGGTCCTAAGACTCTAGATTATACTACTAGTTCTAAACCTCATCTTAATTCTGGTCGTCCATACACACTTAGGCATTTGCCGAAGTATATGACACCACCAGCCATATGGAGATTTGGCATG >MHV_BHKR_lab_USA_icA59_17Cl1_2012_NS4_AGT17728_1_2012_10_25_USA_Mouse_Murine_coronavirus ATGAGGATTGACTATCACAGCCCCTGCAGGAAAGACAGAAAATCTAAACAATTTATAGCATTCTCATTGCTACCTGGCCCCGTAAGAGGCAGTCATAGCTATGGCCGTGTTGGTCCTAAGGCTACATTGGCTGCTGTCTTTATTGGTCCATTTATTGTAGCATGTATGCTAGGCATTGGCCTAGTTTATTTATTGCAATTGCAAGTTCAAATTTTTCATGTTAAGGATACCATACGTGTGACTGGCAAGCCAGCCACTGTGTCTTATACTACAAGTACACCAGTAACACCGAGCGCGACGACGCTCGATGGTACTACGTATACTTTAATTAGACCCACTAGCTCTTATACAAGAGTTTATCTTGGTACTCCAAGAGGTTTTGATTATAGTACATTTGGGCCTAAGACCCTAGATTATGTTACTAATCTAAACCTCATCTTAATTCTGGTCGTCCATATACTTTTAAGGCATTGTCCAGGCATA--------------------------------- >MHV_BHKR_lab_USA_icA59_L94P_2012_NS4_AGT17739_1_2012_10_25_USA_Mouse_Murine_coronavirus ATGAGGATTGACTATCACAGCCCCTGCAGGAAAGACAGAAAATCTAAACAATTTATAGCATTCTCATTGCTACCTGGCCCCGTAAGAGGCAGTCATAGCTATGGCCGTGTTGGTCCTAAGGCTACATTGGCTGCTGTCTTTATTGGTCCATTTATTGTAGCATGTATGCTAGGCATTGGCCTAGTTTATTTATTGCAATTGCAAGTTCAAATTTTTCATGTTAAGGATACCATACGTGTGACTGGCAAGCCAGCCACTGTGTCTTATACTACAAGTACACCAGTAACACCGAGCGCGACGACGCTCGATGGTACTACGTATACTTTAATTAGACCCACTAGCTCTTATACAAGAGTTTATCTTGGTACTCCAAGAGGTTTTGATTATAGTACATTTGGGCCTAAGACCCTAGATTATGTTACTAATCTAAACCTCATCTTAATTCTGGTCGTCCATATACTTTTAAGGCATTGTCCAGGCATA--------------------------------- >MHV_BHKR_lab_USA_icA59_ns2M_2012_NS4_AGT17750_1_2012_10_25_USA_Mouse_Murine_coronavirus ATGAGGATTGACTATCACAGCCCCTGCAGGAAAGACAGAAAATCTAAACAATTTATAGCATTCTCATTGCTACCTGGCCCCGTAAGAGGCAGTCATAGCTATGGCCGTGTTGGTCCTAAGGCTACATTGGCTGCTGTCTTTATTGGTCCATTTATTGTAGCATGTATGCTAGGCATTGGCCTAGTTTATTTATTGCAATTGCAAGTTCAAATTTTTCATGTTAAGGATACCATACGTGTGACTGGCAAGCCAGCCACTGTGTCTTATACTACAAGTACACCAGTAACACCGAGCGCGACGACGCTCGATGGTACTACGTATACTTTAATTAGACCCACTAGCTCTTATACAAGAGTTTATCTTGGTACTCCAAGAGGTTTTGATTATAGTACATTTGGGCCTAAGACCCTAGATTATGTTACTAATCTAAACCTCATCTTAATTCTGGTCGTCCATATACTTTTAAGGCATTGTCCAGGCATA--------------------------------- >MHV_BHKR_lab_USA_infA59_H126A_2012_NS4_AGT17717_1_2012_10_25_USA_Mouse_Murine_coronavirus ATGAGGATTGACTATCACAGCCTCTCCTGGAAAGACAGAAAATCTAAACAATTTATAGCATTCTCATTGCTACCTGGCCCCGTAAGAGGCAGTCATAGCTATGGCCGTGTTGGTCCTAAGGCTACATTGGCTGCTGTCTTTATTGGTCCATTTATTGTAGCATGTATGCTAGGCATTGGCCTAGTTTATTTATTGCAATTGCAAGTTCAAATTTTTCATGTTAAGGATACCATACGTGTGACTGGCAAGCCAGCCACTGTGTCTTATACTACAAGTACACCAGTAACACCGAGCGCGACGACGCTCGATGGTACTACGTATACTTTAATTAGACCCACTAGCTCTTATACAAGAGTTTATCTTGGTACTCCAAGAGGTTTTGATTATAGTACATTTGGGCCTAAGACCCTAGATTATGTTACTAATCTAAACCTCATCTTAATTCTGGTCGTCCATATACTTTTAAGGCATTGTCCAGGCATA--------------------------------- >MHV_MI_ns4_BAJ04697_1_1994_Australia_Mouse_Murine_coronavirus ---------------------------------------------------------------------------------------------------ATGGCCGTTCTTGGTCCTAAGGCTACCTTTGCTGCTGTCTTTATTGGTCCATTTATTGTAGCATGTATGCTAGGCATTGGCCTAGTCTATCTATATCAAGTTCAAGTTAAAATTTTTCATGTTGATGATACCTTACGTGTGACTGGCAAGCCAGCCACTGTGTCTTATACTACAAGTACACCAGTAACGCCGAGCGCAACCACGCTCGATGGTACTACGTATACTTTAATTAGACCCACTAGCTCTTATACAAGAGTTTACCTTGGCAGTCCACGAGGTTTTGATACTAGTACATTTGGTCCAAAAACTCTAGATTACATTACTAGTTCTAAACCTCATCTTAATTCTGGTCGTCCCTATAGTCTTAAGGCATTGCCGAGGCATATGAGACCACCAGCTACATGGAGATATGGCATG >MHV_JHM_IA_NA_ACN89764_1_NA_USA_Mouse_Murine_coronavirus ---------------------------------------------------------------------------------------------------ATGGCCCTCATCGGTCCCAAGACTACTATTGCTGCTGTCTTTATTGGTCCATTTCTAGTAGCATGTATGCTAGGCATTGGCCTAGTTTATTTATTGCAATTGCAAGTTCAAATTTTTCATGTTAAGGATACCATACGCGTGACTGGCAAGCCAGCCACTGTGTCTTATACTACAAGTACACCAGTAACGCCGGTTGCAACTACGCTCGACGGTACTACGTATACTTTAATTAGACCCACCAGCTCTTATACAAGAGTCTACCTTGGTAGTTCAAGAGGTTTTGATACTAGTACATTTGGTCCTAAGACTCTAGATTATATTACTAGTTCTAAACCTCATCTTAATTCTGGCCGTCCATACACACTTAGGCACTTGCCGAAGTATATGACACCACCAGCTACATGGAGATTTGGCATG >MHV_S_3239_17_NA_AFD97609_1_NA_NA_Unknown_Murine_coronavirus ---------------------------------------------------------------------------------------------------ATGGCCGTGTTAGGTCCTAAGGCTACATTGGCTGCTGTCTTTATTGGTCCTTTTATTGTAGCATGTATGCTAGGCATTGGCCTAGTTTATTTATTGCAATTGCAAGTTCAAATTTTTCATGTTAAGGATACCATACGTGTGACTGGCAAGCCAGCCACTGTGTCTTATACTACAAGTACACCAGTAACACCGAGCGCGACGACGCTCGATGGTACTACGTATACTTTAATTAGACCCACAAGCTCTTACACAAGAGTTTATCTTGGAAAAACCAGAGGATTTGACACTAGTACATTTGGCCCAAAAGTCTTGGATTATATTACTAGTTCTAAACCTCATCTTAATTCTGGTCGTCCATATTCCTTAAGCTGT--------------------------------------------- >ML_10_ORF4B_AAF69345_1_NA_NA_Unknown_Murine_coronavirus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCTAGGCATTGGCCTAGTTTATTTATTGCAATTGCAAGTTCAAATTTTTCATGTTAAGGATACCATACGTGTGACTGGCAAGCCAGCCACTGTGTCTTATACTACAAGTACACCAGTAACACCGAGCGCGACGACGCTCGATGGTACTACGTATACTTTAATTAGACCCACTAGCTCTTATACAAGAGTTTATCTTGGTACTCCAAGAGGTTTTGATTATAGTACATTTGGGCCTAAGACCCTAGATTATGTTACTAATCTAAACCTCATCTTAATTCTGGTCGTCCATATACTTTTAAGGCATTGTCCAGGCATA--------------------------------- >Parker_NA_YP_003029849_1_NA_NA_Rat_Murine_coronavirus ---------------------------------------------------------------------------------------------------ATGGCCGCGTTAGGTCATAAGGCTAAATTGGCTGCTGTCTTTATTGGTCCATTTATTGTAGCATGTATGCTAGGCATCAGCCTAGTTTATTTATATCAATTGCAAGTGCAAATTTTTCATGTTAATAATACCATACGTGTGACTGGCAAGCCAGCCACTGTGTCTTATACTTTAAGTACACCAGTAACGCCAGTTGCAACAACGCTCGACGGTACTACGTATACTTTAATTAGACCCACGAGCTCTTATACAAGAGTTTATCTTGGTAAAACCAGAGGGTTTGATACTAGTACGTTTGGCCCAAAGGTGCTAAATTATATTACTAGTTCTAAACCTCATCTTAATTCTGGTCGTCCATACACCTTTCGGCATATGCCCAAGTATATGAAAGGCTTGGTG------------------ >Penn_97_1_ORF4B_AAF69340_1_NA_NA_Unknown_Murine_coronavirus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCTAGGCATTGGCCTAGTTTATTCATTGCAATTGCAAGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >RJHM_A_NA_ACN89695_1_NA_USA_Mouse_Murine_coronavirus ---------------------------------------------------------------------------------------------------ATGGCCCTCATCGGTCCCAAGACTACTATTGCTGCTGTCTTTATTGGTCCATTTCTAGTAGCATGTATGCTAGGCATTGGCCTAGTTTATTTATTGCAATTGCAAGTTCAAATTTTTCATGTTAAGGATACCATACGCGTGACTGGCAAGCCAGCCACTGTGTCTTATACTACAAGTACACCAGTAACGCCGGTTGCAACTACGCTCGACGGTACTACGTATACTTTAATTAGACCCACCAGCTCTTATACAAGAGTCTACCTTGGTAGTTCAAGAGGTTTTGATACTAGTACATTTGGTCCTAAGACTCTAGATTATATTACTAGTTCTAAACCTCATCTTAATTCTGGCCGTCCATACACACTTAGGCACTTGCCGAAGTATATGACACCACCAGCTACATGGAGATTTGGCTTG >SA59_RJHM_NA_ACN89732_1_NA_USA_Mouse_Murine_coronavirus ---------------------------------------------------------------------------------------------------ATGGCCCTCATCGGTCCCAAGACTACTATTGCTGCTGTCTTTATTGGTCCATTTCTAGTAGCATGTATGCTAGGCATTGGCCTAGTTTATTTATTGCAATTGCAAGTTCAAATTTTTCATGTTAAGGATACCATACGCGTGACTGGCAAGCCAGCCACTGTGTCTTATACTACAAGTACACCAGTAACGCCGGTTGCAACTACGCTCGACGGTACTACGTATACTTTAATTAGACCCACCAGCTCTTATACAAGAGTCTACCTTGGTAGTTCAAGAGGTTTTGATACTAGTACATTTGGTCCTAAGACTCTAGATTATATTACTAGTTCTAAACCTCATCTTAATTCTGGCCGTCCATACACACTTAGGCACTTGCCGAAGTATATGACACCACCAGCTACATGGAGATTTGGCTTG >UNKNOWN_AC_000192_NA_YP_209234_1_NA_NA_Unknown_Murine_coronavirus ---------------------------------------------------------------------------------------------------ATGGCCCTCATCGGTCCCAAGACTACTATTGCTGCTGTCTTTATTGGTCCATTTCTAGTAGCATGTATGCTAGGCATTGGCCTAGTTTATTTATTGCAATTGCAAGTTCAAATTTTTCATGTTAAGGATACCATACGCGTGACTGGCAAGCCAGCCACTGTGTCTTATACTACAAGTACACCAGTAACGCCGGTTGCAACTACGCTCGACGGTACTACGTATACTTTAATTAGACCCACCAGCTCTTATACAAGAGTCTACCTTGGTAGTTCAAGAGGTTTTGATACTAGTACATTTGGTCCTAAGACTCTAGATTATATTACTAGTTCTAAACCTCATCTTAATTCTGGCCGTCCATACACACTTAGGCACTTGCCGAAGTATATGACACCACCAGCTACATGGAGATTTGGCTTG >repA59_RJHM_NA_ACN89715_1_NA_USA_Mouse_Murine_coronavirus ---------------------------------------------------------------------------------------------------ATGGCCCTCATCGGTCCCAAGACTACTATTGCTGCTGTCTTTATTGGTCCATTTCTAGTAGCATGTATGCTAGGCATTGGCCTAGTTTATTTATTGCAATTGCAAGTTCAAATTTTTCATGTTAAGGATACCATACGCGTGACTGGCAAGCCAGCCACTGTGTCTTATACTACAAGTACACCAGTAACGCCGGTTGCAACTACGCTCGACGGTACTACGTATACTTTAATTAGACCCACCAGCTCTTATACAAGAGTCTACCTTGGTAGTTCAAGAGGTTTTGATACTAGTACATTTGGTCCTAAGACTCTAGATTATATTACTAGTTCTAAACCTCATCTTAATTCTGGCCGTCCATACACACTTAGGCACTTGCCGAAGTATATGACACCACCAGCTACATGGAGATTTGGCTTG
>681_NA_AFG25752_1_NA_NA_Rat_Murine_coronavirus ---------------------------------MAALGHKAKLAAVFIGPFIVACMLGISLVYLYQLQNQIFHVNNTIRVTGKPAKLYYSLSTSVTPVATTLDGTTYTLIRPTSSYTRVYLGKTRGFDTSTFGPKVLNYITSSKPHLNSGRPYTFRHMPKYMKGLV------ >8190_NA_AFG25762_1_NA_NA_Rat_Murine_coronavirus ---------------------------------MAALGHKAKLAAVFIGPFIVACMLGISLVYLYQLQVQIFHVNNTIRVTGKPATVSYTLSTPVTPVATTLDGTTYTLIRPTSSYTRVYLGKTRGFDTSTFGPKVLNYITSSKPHLNSGRPYTFRHMPKYMTPSATWRFGM >A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus -------------------------------------------------------MLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSATTLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILVVHILLRHCPGI----------- >JHM_WU_NS4_AFO11518_1_1947_08_14_USA_Unknown_Murine_coronavirus ---------------------------------MALIGPKTTIAAVFIGPFLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVATTLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSGRPYTLRHLPKYMTPPATWRFGL >JHM_WU_Dns2_NS4_AFO11508_1_1947_08_14_USA_Unknown_Murine_coronavirus ---------------------------------MALIGPKTTIAAVFIGPFLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVATTLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSGRPYTLRHLPKYMTPPATWRFGL >MHV_2_NA_AAF19387_1_NA_NA_Unknown_Murine_coronavirus -------------------------------------------------------MLGIGLVYSLQLQV------------------------------------------------------------------------------------------------------- >MHV_1_NA_ACN89734_1_NA_USA_Mouse_Murine_coronavirus ---------------------------------MAIIGPKTTIAAVFIGPFIVACMLGIGLVYLLQLQVQIFHVNDTIRVTGKPATVSYTISTPVTPSATTLDGTTYTLIRPTSSYTRVHLGSPRGFDTSTFGPKTLDYTTSSKPHLNSGRPYTLRHLPKYMTPPAIWRFGM >MHV_BHKR_lab_USA_icA59_17Cl1_2012_NS4_AGT17728_1_2012_10_25_USA_Mouse_Murine_coronavirus MRIDYHSPCRKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGPFIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSATTLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILVVHILLRHCPGI----------- >MHV_BHKR_lab_USA_icA59_L94P_2012_NS4_AGT17739_1_2012_10_25_USA_Mouse_Murine_coronavirus MRIDYHSPCRKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGPFIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSATTLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILVVHILLRHCPGI----------- >MHV_BHKR_lab_USA_icA59_ns2M_2012_NS4_AGT17750_1_2012_10_25_USA_Mouse_Murine_coronavirus MRIDYHSPCRKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGPFIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSATTLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILVVHILLRHCPGI----------- >MHV_BHKR_lab_USA_infA59_H126A_2012_NS4_AGT17717_1_2012_10_25_USA_Mouse_Murine_coronavirus MRIDYHSLSWKDRKSKQFIAFSLLPGPVRGSHSYGRVGPKATLAAVFIGPFIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSATTLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILVVHILLRHCPGI----------- >MHV_MI_ns4_BAJ04697_1_1994_Australia_Mouse_Murine_coronavirus ---------------------------------MAVLGPKATFAAVFIGPFIVACMLGIGLVYLYQVQVKIFHVDDTLRVTGKPATVSYTTSTPVTPSATTLDGTTYTLIRPTSSYTRVYLGSPRGFDTSTFGPKTLDYITSSKPHLNSGRPYSLKALPRHMRPPATWRYGM >MHV_JHM_IA_NA_ACN89764_1_NA_USA_Mouse_Murine_coronavirus ---------------------------------MALIGPKTTIAAVFIGPFLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVATTLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSGRPYTLRHLPKYMTPPATWRFGM >MHV_S_3239_17_NA_AFD97609_1_NA_NA_Unknown_Murine_coronavirus ---------------------------------MAVLGPKATLAAVFIGPFIVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSATTLDGTTYTLIRPTSSYTRVYLGKTRGFDTSTFGPKVLDYITSSKPHLNSGRPYSLSC--------------- >ML_10_ORF4B_AAF69345_1_NA_NA_Unknown_Murine_coronavirus -------------------------------------------------------MLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPSATTLDGTTYTLIRPTSSYTRVYLGTPRGFDYSTFGPKTLDYVTNLNLILILVVHILLRHCPGI----------- >Parker_NA_YP_003029849_1_NA_NA_Rat_Murine_coronavirus ---------------------------------MAALGHKAKLAAVFIGPFIVACMLGISLVYLYQLQVQIFHVNNTIRVTGKPATVSYTLSTPVTPVATTLDGTTYTLIRPTSSYTRVYLGKTRGFDTSTFGPKVLNYITSSKPHLNSGRPYTFRHMPKYMKGLV------ >Penn_97_1_ORF4B_AAF69340_1_NA_NA_Unknown_Murine_coronavirus -------------------------------------------------------MLGIGLVYSLQLQV------------------------------------------------------------------------------------------------------- >RJHM_A_NA_ACN89695_1_NA_USA_Mouse_Murine_coronavirus ---------------------------------MALIGPKTTIAAVFIGPFLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVATTLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSGRPYTLRHLPKYMTPPATWRFGL >SA59_RJHM_NA_ACN89732_1_NA_USA_Mouse_Murine_coronavirus ---------------------------------MALIGPKTTIAAVFIGPFLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVATTLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSGRPYTLRHLPKYMTPPATWRFGL >UNKNOWN_AC_000192_NA_YP_209234_1_NA_NA_Unknown_Murine_coronavirus ---------------------------------MALIGPKTTIAAVFIGPFLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVATTLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSGRPYTLRHLPKYMTPPATWRFGL >repA59_RJHM_NA_ACN89715_1_NA_USA_Mouse_Murine_coronavirus ---------------------------------MALIGPKTTIAAVFIGPFLVACMLGIGLVYLLQLQVQIFHVKDTIRVTGKPATVSYTTSTPVTPVATTLDGTTYTLIRPTSSYTRVYLGSSRGFDTSTFGPKTLDYITSSKPHLNSGRPYTLRHLPKYMTPPATWRFGL
Reading sequence file /data//pss_subsets/A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/codeml/fasta/A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus.result.1
Found 21 sequences of length 516
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 11.5%
Found 111 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0% 99.1%100.0%
Using a window size of 80 with k as 17
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 8 polymorphic sites
**p-Value(s)**
----------
NSS: 0.00e+00 (1000 permutations)
Max Chi^2: 8.24e-01 (1000 permutations)
PHI (Permutation): 1.00e+00 (1000 permutations)
PHI (Normal): 1.00e+00
#NEXUS
[ID: 8565996087]
begin taxa;
dimensions ntax=21;
taxlabels
681_NA_AFG25752_1_NA_NA_Rat_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_ns2M_2012_NS4_AGT17750_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_infA59_H126A_2012_NS4_AGT17717_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_MI_ns4_BAJ04697_1_1994_Australia_Mouse_Murine_coronavirus
MHV_JHM_IA_NA_ACN89764_1_NA_USA_Mouse_Murine_coronavirus
MHV_S_3239_17_NA_AFD97609_1_NA_NA_Unknown_Murine_coronavirus
ML_10_ORF4B_AAF69345_1_NA_NA_Unknown_Murine_coronavirus
Parker_NA_YP_003029849_1_NA_NA_Rat_Murine_coronavirus
Penn_97_1_ORF4B_AAF69340_1_NA_NA_Unknown_Murine_coronavirus
RJHM_A_NA_ACN89695_1_NA_USA_Mouse_Murine_coronavirus
SA59_RJHM_NA_ACN89732_1_NA_USA_Mouse_Murine_coronavirus
8190_NA_AFG25762_1_NA_NA_Rat_Murine_coronavirus
UNKNOWN_AC_000192_NA_YP_209234_1_NA_NA_Unknown_Murine_coronavirus
repA59_RJHM_NA_ACN89715_1_NA_USA_Mouse_Murine_coronavirus
A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus
JHM_WU_NS4_AFO11518_1_1947_08_14_USA_Unknown_Murine_coronavirus
JHM_WU_Dns2_NS4_AFO11508_1_1947_08_14_USA_Unknown_Murine_coronavirus
MHV_2_NA_AAF19387_1_NA_NA_Unknown_Murine_coronavirus
MHV_1_NA_ACN89734_1_NA_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_17Cl1_2012_NS4_AGT17728_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_L94P_2012_NS4_AGT17739_1_2012_10_25_USA_Mouse_Murine_coronavirus
;
end;
begin trees;
translate
1 681_NA_AFG25752_1_NA_NA_Rat_Murine_coronavirus,
2 MHV_BHKR_lab_USA_icA59_ns2M_2012_NS4_AGT17750_1_2012_10_25_USA_Mouse_Murine_coronavirus,
3 MHV_BHKR_lab_USA_infA59_H126A_2012_NS4_AGT17717_1_2012_10_25_USA_Mouse_Murine_coronavirus,
4 MHV_MI_ns4_BAJ04697_1_1994_Australia_Mouse_Murine_coronavirus,
5 MHV_JHM_IA_NA_ACN89764_1_NA_USA_Mouse_Murine_coronavirus,
6 MHV_S_3239_17_NA_AFD97609_1_NA_NA_Unknown_Murine_coronavirus,
7 ML_10_ORF4B_AAF69345_1_NA_NA_Unknown_Murine_coronavirus,
8 Parker_NA_YP_003029849_1_NA_NA_Rat_Murine_coronavirus,
9 Penn_97_1_ORF4B_AAF69340_1_NA_NA_Unknown_Murine_coronavirus,
10 RJHM_A_NA_ACN89695_1_NA_USA_Mouse_Murine_coronavirus,
11 SA59_RJHM_NA_ACN89732_1_NA_USA_Mouse_Murine_coronavirus,
12 8190_NA_AFG25762_1_NA_NA_Rat_Murine_coronavirus,
13 UNKNOWN_AC_000192_NA_YP_209234_1_NA_NA_Unknown_Murine_coronavirus,
14 repA59_RJHM_NA_ACN89715_1_NA_USA_Mouse_Murine_coronavirus,
15 A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus,
16 JHM_WU_NS4_AFO11518_1_1947_08_14_USA_Unknown_Murine_coronavirus,
17 JHM_WU_Dns2_NS4_AFO11508_1_1947_08_14_USA_Unknown_Murine_coronavirus,
18 MHV_2_NA_AAF19387_1_NA_NA_Unknown_Murine_coronavirus,
19 MHV_1_NA_ACN89734_1_NA_USA_Mouse_Murine_coronavirus,
20 MHV_BHKR_lab_USA_icA59_17Cl1_2012_NS4_AGT17728_1_2012_10_25_USA_Mouse_Murine_coronavirus,
21 MHV_BHKR_lab_USA_icA59_L94P_2012_NS4_AGT17739_1_2012_10_25_USA_Mouse_Murine_coronavirus
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:2.818123e-02,8:1.532660e-03,(((((2:1.334677e-03,3:3.954392e-03,7:1.746548e-03,15:1.815433e-03,20:1.256684e-03,21:1.286051e-03)0.948:9.450369e-02,9:7.935644e-03,18:7.769470e-03)0.636:6.922667e-02,(4:7.125538e-02,((5:1.734095e-03,(10:1.437928e-03,11:1.417219e-03,13:1.493057e-03,14:1.480899e-03,16:1.435307e-03,17:1.402540e-03)0.780:3.362743e-03)0.949:3.979747e-02,19:1.832896e-02)0.824:1.489954e-02)0.585:1.141856e-02)0.896:3.068756e-02,6:4.106017e-02)1.000:6.241906e-02,12:1.540751e-03)1.000:1.920775e-02);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:2.818123e-02,8:1.532660e-03,(((((2:1.334677e-03,3:3.954392e-03,7:1.746548e-03,15:1.815433e-03,20:1.256684e-03,21:1.286051e-03):9.450369e-02,9:7.935644e-03,18:7.769470e-03):6.922667e-02,(4:7.125538e-02,((5:1.734095e-03,(10:1.437928e-03,11:1.417219e-03,13:1.493057e-03,14:1.480899e-03,16:1.435307e-03,17:1.402540e-03):3.362743e-03):3.979747e-02,19:1.832896e-02):1.489954e-02):1.141856e-02):3.068756e-02,6:4.106017e-02):6.241906e-02,12:1.540751e-03):1.920775e-02);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1660.99 -1690.70
2 -1663.91 -1686.03
--------------------------------------
TOTAL -1661.63 -1690.02
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.599662 0.003607 0.487130 0.722433 0.596048 1284.92 1357.45 1.000
r(A<->C){all} 0.124829 0.000788 0.069521 0.178156 0.122810 844.71 935.40 1.002
r(A<->G){all} 0.210341 0.001242 0.141826 0.280114 0.208140 744.89 796.55 1.000
r(A<->T){all} 0.146455 0.000685 0.096114 0.197162 0.144555 1073.46 1146.21 1.000
r(C<->G){all} 0.124336 0.001032 0.063290 0.187711 0.122339 757.89 772.16 1.000
r(C<->T){all} 0.274344 0.001439 0.197504 0.344036 0.272657 717.31 744.82 1.000
r(G<->T){all} 0.119695 0.000737 0.071973 0.176653 0.117801 792.73 929.75 1.000
pi(A){all} 0.278024 0.000336 0.240710 0.313094 0.277435 1214.43 1223.56 1.000
pi(C){all} 0.223619 0.000273 0.193331 0.258340 0.223376 1124.81 1125.40 1.000
pi(G){all} 0.191485 0.000247 0.160068 0.221613 0.191450 1047.02 1144.45 1.000
pi(T){all} 0.306871 0.000349 0.271040 0.344082 0.306356 1007.32 1097.51 1.001
alpha{1,2} 1.582460 0.830411 0.410390 3.442103 1.344566 1276.93 1303.18 1.000
alpha{3} 1.450089 0.825114 0.327144 3.180875 1.212092 1016.56 1171.63 1.001
pinvar{all} 0.173329 0.011015 0.000200 0.354673 0.165884 978.83 1017.88 1.002
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/A59_NA_YP_009824983_1_NA_USA_Unknown_Murine_coronavirus.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 21 ls = 14
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 0 0 0 0 0 0 | Ser TCT 0 0 0 0 0 0 | Tyr TAT 2 2 1 1 1 1 | Cys TGT 0 0 0 0 0 0
TTC 0 0 0 0 0 0 | TCC 0 0 0 0 0 0 | TAC 0 0 0 0 0 0 | TGC 0 0 0 0 0 0
Leu TTA 1 1 1 1 1 0 | TCA 0 0 0 0 0 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 1 1 2 2 2 2 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 0 0 0 0 0 0 | Pro CCT 0 0 0 0 0 0 | His CAT 0 0 0 0 0 0 | Arg CGT 0 0 0 0 0 0
CTC 0 0 0 0 0 0 | CCC 0 0 0 0 0 0 | CAC 0 0 0 0 0 0 | CGC 0 0 0 0 0 0
CTA 2 2 2 2 2 2 | CCA 0 0 0 0 0 0 | Gln CAA 2 2 2 2 2 2 | CGA 0 0 0 0 0 0
CTG 0 0 0 0 0 0 | CCG 0 0 0 0 0 0 | CAG 0 0 0 0 0 0 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 0 0 1 1 1 1 | Thr ACT 0 0 0 0 0 0 | Asn AAT 0 0 0 0 0 0 | Ser AGT 0 0 0 0 0 0
ATC 1 1 0 0 0 0 | ACC 0 0 0 0 0 0 | AAC 1 0 0 0 0 0 | AGC 1 1 0 0 0 0
ATA 0 0 0 0 0 0 | ACA 0 0 0 0 0 0 | Lys AAA 0 0 0 0 0 0 | Arg AGA 0 0 0 0 0 0
Met ATG 1 1 1 1 1 1 | ACG 0 0 0 0 0 0 | AAG 0 0 0 0 0 0 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 1 1 2 2 2 2 | Ala GCT 0 0 0 0 0 0 | Asp GAT 0 0 0 0 0 0 | Gly GGT 0 0 0 0 0 0
GTC 0 0 0 0 0 0 | GCC 0 0 0 0 0 0 | GAC 0 0 0 0 0 0 | GGC 1 1 2 2 2 2
GTA 0 0 0 0 0 0 | GCA 0 0 0 0 0 0 | Glu GAA 0 0 0 0 0 0 | GGA 0 0 0 0 0 0
GTG 0 1 0 0 0 0 | GCG 0 0 0 0 0 0 | GAG 0 0 0 0 0 0 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 0 0 0 0 0 0 | Ser TCT 0 0 0 0 0 0 | Tyr TAT 1 1 1 1 1 2 | Cys TGT 0 0 0 0 0 0
TTC 0 0 0 0 0 0 | TCC 0 0 0 0 0 0 | TAC 0 0 0 0 0 0 | TGC 0 0 0 0 0 0
Leu TTA 1 1 1 1 1 0 | TCA 0 0 0 0 0 0 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 2 2 2 2 2 0 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 0 0 0 0 0 0 | Pro CCT 0 0 0 0 0 0 | His CAT 0 0 0 0 0 0 | Arg CGT 0 0 0 0 0 0
CTC 0 0 0 0 0 0 | CCC 0 0 0 0 0 0 | CAC 0 0 0 0 0 0 | CGC 0 0 0 0 0 0
CTA 2 2 2 2 2 3 | CCA 0 0 0 0 0 0 | Gln CAA 2 2 2 2 2 2 | CGA 0 0 0 0 0 0
CTG 0 0 0 0 0 0 | CCG 0 0 0 0 0 0 | CAG 0 0 0 0 0 0 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 1 1 1 1 1 1 | Thr ACT 0 0 0 0 0 0 | Asn AAT 0 0 0 0 0 0 | Ser AGT 0 0 0 0 0 0
ATC 0 0 0 0 0 0 | ACC 0 0 0 0 0 0 | AAC 0 0 0 0 0 0 | AGC 0 0 0 0 0 0
ATA 0 0 0 0 0 0 | ACA 0 0 0 0 0 0 | Lys AAA 0 0 0 0 0 0 | Arg AGA 0 0 0 0 0 0
Met ATG 1 1 1 1 1 1 | ACG 0 0 0 0 0 0 | AAG 0 0 0 0 0 0 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 2 2 2 2 2 2 | Ala GCT 0 0 0 0 0 0 | Asp GAT 0 0 0 0 0 0 | Gly GGT 0 0 0 0 0 0
GTC 0 0 0 0 0 1 | GCC 0 0 0 0 0 0 | GAC 0 0 0 0 0 0 | GGC 2 2 2 2 2 2
GTA 0 0 0 0 0 0 | GCA 0 0 0 0 0 0 | Glu GAA 0 0 0 0 0 0 | GGA 0 0 0 0 0 0
GTG 0 0 0 0 0 0 | GCG 0 0 0 0 0 0 | GAG 0 0 0 0 0 0 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 0 0 0 0 0 0 | Ser TCT 0 0 0 0 0 0 | Tyr TAT 1 1 1 2 1 1 | Cys TGT 0 0 0 0 0 0
TTC 0 0 0 0 0 0 | TCC 0 0 0 0 0 0 | TAC 0 0 0 0 0 0 | TGC 0 0 0 0 0 0
Leu TTA 1 1 1 1 0 1 | TCA 0 0 0 0 1 0 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 2 2 2 1 2 2 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 0 0 0 0 0 0 | Pro CCT 0 0 0 0 0 0 | His CAT 0 0 0 0 0 0 | Arg CGT 0 0 0 0 0 0
CTC 0 0 0 0 0 0 | CCC 0 0 0 0 0 0 | CAC 0 0 0 0 0 0 | CGC 0 0 0 0 0 0
CTA 2 2 2 2 2 2 | CCA 0 0 0 0 0 0 | Gln CAA 2 2 2 2 2 2 | CGA 0 0 0 0 0 0
CTG 0 0 0 0 0 0 | CCG 0 0 0 0 0 0 | CAG 0 0 0 0 0 0 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 1 1 1 0 1 1 | Thr ACT 0 0 0 0 0 0 | Asn AAT 0 0 0 0 0 0 | Ser AGT 0 0 0 0 0 0
ATC 0 0 0 1 0 0 | ACC 0 0 0 0 0 0 | AAC 0 0 0 0 0 0 | AGC 0 0 0 1 0 0
ATA 0 0 0 0 0 0 | ACA 0 0 0 0 0 0 | Lys AAA 0 0 0 0 0 0 | Arg AGA 0 0 0 0 0 0
Met ATG 1 1 1 1 1 1 | ACG 0 0 0 0 0 0 | AAG 0 0 0 0 0 0 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 2 2 2 1 2 2 | Ala GCT 0 0 0 0 0 0 | Asp GAT 0 0 0 0 0 0 | Gly GGT 0 0 0 0 0 0
GTC 0 0 0 0 0 0 | GCC 0 0 0 0 0 0 | GAC 0 0 0 0 0 0 | GGC 2 2 2 1 2 2
GTA 0 0 0 0 0 0 | GCA 0 0 0 0 0 0 | Glu GAA 0 0 0 0 0 0 | GGA 0 0 0 0 0 0
GTG 0 0 0 1 0 0 | GCG 0 0 0 0 0 0 | GAG 0 0 0 0 0 0 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------
Phe TTT 0 0 0 | Ser TCT 0 0 0 | Tyr TAT 1 1 1 | Cys TGT 0 0 0
TTC 0 0 0 | TCC 0 0 0 | TAC 0 0 0 | TGC 0 0 0
Leu TTA 1 1 1 | TCA 0 0 0 | *** TAA 0 0 0 | *** TGA 0 0 0
TTG 2 2 2 | TCG 0 0 0 | TAG 0 0 0 | Trp TGG 0 0 0
--------------------------------------------------------------------------------------
Leu CTT 0 0 0 | Pro CCT 0 0 0 | His CAT 0 0 0 | Arg CGT 0 0 0
CTC 0 0 0 | CCC 0 0 0 | CAC 0 0 0 | CGC 0 0 0
CTA 2 2 2 | CCA 0 0 0 | Gln CAA 2 2 2 | CGA 0 0 0
CTG 0 0 0 | CCG 0 0 0 | CAG 0 0 0 | CGG 0 0 0
--------------------------------------------------------------------------------------
Ile ATT 1 1 1 | Thr ACT 0 0 0 | Asn AAT 0 0 0 | Ser AGT 0 0 0
ATC 0 0 0 | ACC 0 0 0 | AAC 0 0 0 | AGC 0 0 0
ATA 0 0 0 | ACA 0 0 0 | Lys AAA 0 0 0 | Arg AGA 0 0 0
Met ATG 1 1 1 | ACG 0 0 0 | AAG 0 0 0 | AGG 0 0 0
--------------------------------------------------------------------------------------
Val GTT 2 2 2 | Ala GCT 0 0 0 | Asp GAT 0 0 0 | Gly GGT 0 0 0
GTC 0 0 0 | GCC 0 0 0 | GAC 0 0 0 | GGC 2 2 2
GTA 0 0 0 | GCA 0 0 0 | Glu GAA 0 0 0 | GGA 0 0 0
GTG 0 0 0 | GCG 0 0 0 | GAG 0 0 0 | GGG 0 0 0
--------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C1
position 1: T:0.28571 C:0.28571 A:0.28571 G:0.14286
position 2: T:0.50000 C:0.00000 A:0.35714 G:0.14286
position 3: T:0.21429 C:0.28571 A:0.35714 G:0.14286
Average T:0.33333 C:0.19048 A:0.33333 G:0.14286
#2: C2
position 1: T:0.28571 C:0.28571 A:0.21429 G:0.21429
position 2: T:0.57143 C:0.00000 A:0.28571 G:0.14286
position 3: T:0.21429 C:0.21429 A:0.35714 G:0.21429
Average T:0.35714 C:0.16667 A:0.28571 G:0.19048
#3: C3
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.64286 C:0.00000 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.40476 C:0.14286 A:0.23810 G:0.21429
#4: C4
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.64286 C:0.00000 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.40476 C:0.14286 A:0.23810 G:0.21429
#5: C5
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.64286 C:0.00000 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.40476 C:0.14286 A:0.23810 G:0.21429
#6: C6
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.57143 C:0.07143 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.38095 C:0.16667 A:0.23810 G:0.21429
#7: C7
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.64286 C:0.00000 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.40476 C:0.14286 A:0.23810 G:0.21429
#8: C8
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.64286 C:0.00000 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.40476 C:0.14286 A:0.23810 G:0.21429
#9: C9
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.64286 C:0.00000 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.40476 C:0.14286 A:0.23810 G:0.21429
#10: C10
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.64286 C:0.00000 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.40476 C:0.14286 A:0.23810 G:0.21429
#11: C11
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.64286 C:0.00000 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.40476 C:0.14286 A:0.23810 G:0.21429
#12: C12
position 1: T:0.14286 C:0.35714 A:0.14286 G:0.35714
position 2: T:0.57143 C:0.00000 A:0.28571 G:0.14286
position 3: T:0.35714 C:0.21429 A:0.35714 G:0.07143
Average T:0.35714 C:0.19048 A:0.26190 G:0.19048
#13: C13
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.64286 C:0.00000 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.40476 C:0.14286 A:0.23810 G:0.21429
#14: C14
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.64286 C:0.00000 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.40476 C:0.14286 A:0.23810 G:0.21429
#15: C15
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.64286 C:0.00000 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.40476 C:0.14286 A:0.23810 G:0.21429
#16: C16
position 1: T:0.28571 C:0.28571 A:0.21429 G:0.21429
position 2: T:0.57143 C:0.00000 A:0.28571 G:0.14286
position 3: T:0.21429 C:0.21429 A:0.35714 G:0.21429
Average T:0.35714 C:0.16667 A:0.28571 G:0.19048
#17: C17
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.57143 C:0.07143 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.38095 C:0.16667 A:0.23810 G:0.21429
#18: C18
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.64286 C:0.00000 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.40476 C:0.14286 A:0.23810 G:0.21429
#19: C19
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.64286 C:0.00000 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.40476 C:0.14286 A:0.23810 G:0.21429
#20: C20
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.64286 C:0.00000 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.40476 C:0.14286 A:0.23810 G:0.21429
#21: C21
position 1: T:0.28571 C:0.28571 A:0.14286 G:0.28571
position 2: T:0.64286 C:0.00000 A:0.21429 G:0.14286
position 3: T:0.28571 C:0.14286 A:0.35714 G:0.21429
Average T:0.40476 C:0.14286 A:0.23810 G:0.21429
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 0 | Ser S TCT 0 | Tyr Y TAT 25 | Cys C TGT 0
TTC 0 | TCC 0 | TAC 0 | TGC 0
Leu L TTA 18 | TCA 2 | *** * TAA 0 | *** * TGA 0
TTG 37 | TCG 0 | TAG 0 | Trp W TGG 0
------------------------------------------------------------------------------
Leu L CTT 0 | Pro P CCT 0 | His H CAT 0 | Arg R CGT 0
CTC 0 | CCC 0 | CAC 0 | CGC 0
CTA 43 | CCA 0 | Gln Q CAA 42 | CGA 0
CTG 0 | CCG 0 | CAG 0 | CGG 0
------------------------------------------------------------------------------
Ile I ATT 18 | Thr T ACT 0 | Asn N AAT 0 | Ser S AGT 0
ATC 3 | ACC 0 | AAC 1 | AGC 3
ATA 0 | ACA 0 | Lys K AAA 0 | Arg R AGA 0
Met M ATG 21 | ACG 0 | AAG 0 | AGG 0
------------------------------------------------------------------------------
Val V GTT 39 | Ala A GCT 0 | Asp D GAT 0 | Gly G GGT 0
GTC 1 | GCC 0 | GAC 0 | GGC 39
GTA 0 | GCA 0 | Glu E GAA 0 | GGA 0
GTG 2 | GCG 0 | GAG 0 | GGG 0
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.27891 C:0.28912 A:0.15646 G:0.27551
position 2: T:0.61905 C:0.00680 A:0.23129 G:0.14286
position 3: T:0.27891 C:0.15986 A:0.35714 G:0.20408
Average T:0.39229 C:0.15193 A:0.24830 G:0.20748
Model 1: NearlyNeutral (2 categories)
TREE # 1: (1, 16, (((((10, 11, 15, 3, 8, 9), 17, 6), (12, ((13, (18, 19, 20, 21, 4, 5)), 7))), 14), 2)); MP score: 11
lnL(ntime: 30 np: 33): -122.888608 +0.000000
22..1 22..16 22..23 23..24 24..25 25..26 26..27 27..10 27..11 27..15 27..3 27..8 27..9 26..17 26..6 25..28 28..12 28..29 29..30 30..13 30..31 31..18 31..19 31..20 31..21 31..4 31..5 29..7 24..14 23..2
0.264569 0.000004 0.000004 0.431778 0.000004 0.075899 0.075899 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.533282 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 2.080103 0.944986 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.381526
(1: 0.264569, 16: 0.000004, (((((10: 0.000004, 11: 0.000004, 15: 0.000004, 3: 0.000004, 8: 0.000004, 9: 0.000004): 0.075899, 17: 0.000004, 6: 0.000004): 0.075899, (12: 0.533282, ((13: 0.000004, (18: 0.000004, 19: 0.000004, 20: 0.000004, 21: 0.000004, 4: 0.000004, 5: 0.000004): 0.000004): 0.000004, 7: 0.000004): 0.000004): 0.000004): 0.000004, 14: 0.000004): 0.431778, 2: 0.000004): 0.000004);
(C1: 0.264569, C16: 0.000004, (((((C10: 0.000004, C11: 0.000004, C15: 0.000004, C3: 0.000004, C8: 0.000004, C9: 0.000004): 0.075899, C17: 0.000004, C6: 0.000004): 0.075899, (C12: 0.533282, ((C13: 0.000004, (C18: 0.000004, C19: 0.000004, C20: 0.000004, C21: 0.000004, C4: 0.000004, C5: 0.000004): 0.000004): 0.000004, C7: 0.000004): 0.000004): 0.000004): 0.000004, C14: 0.000004): 0.431778, C2: 0.000004): 0.000004);
Detailed output identifying parameters
kappa (ts/tv) = 2.08010
MLEs of dN/dS (w) for site classes (K=2)
p: 0.94499 0.05501
w: 1.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
22..1 0.265 24.7 17.3 1.0000 0.0882 0.0882 2.2 1.5
22..16 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
22..23 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
23..24 0.432 24.7 17.3 1.0000 0.1439 0.1439 3.6 2.5
24..25 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
25..26 0.076 24.7 17.3 1.0000 0.0253 0.0253 0.6 0.4
26..27 0.076 24.7 17.3 1.0000 0.0253 0.0253 0.6 0.4
27..10 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
27..11 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
27..15 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
27..3 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
27..8 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
27..9 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
26..17 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
26..6 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
25..28 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
28..12 0.533 24.7 17.3 1.0000 0.1778 0.1778 4.4 3.1
28..29 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
29..30 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
30..13 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
30..31 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
31..18 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
31..19 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
31..20 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
31..21 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
31..4 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
31..5 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
29..7 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
24..14 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
23..2 0.000 24.7 17.3 1.0000 0.0000 0.0000 0.0 0.0
Time used: 0:27
Model 2: PositiveSelection (3 categories)
TREE # 1: (1, 16, (((((10, 11, 15, 3, 8, 9), 17, 6), (12, ((13, (18, 19, 20, 21, 4, 5)), 7))), 14), 2)); MP score: 11
lnL(ntime: 30 np: 35): -112.932741 +0.000000
22..1 22..16 22..23 23..24 24..25 25..26 26..27 27..10 27..11 27..15 27..3 27..8 27..9 26..17 26..6 25..28 28..12 28..29 29..30 30..13 30..31 31..18 31..19 31..20 31..21 31..4 31..5 29..7 24..14 23..2
5.255939 0.000004 0.000004 20.026125 0.000004 0.284138 0.284138 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 24.805877 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 190.597030 0.709733 0.000000 0.675058 999.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 50.656317
(1: 5.255939, 16: 0.000004, (((((10: 0.000004, 11: 0.000004, 15: 0.000004, 3: 0.000004, 8: 0.000004, 9: 0.000004): 0.284138, 17: 0.000004, 6: 0.000004): 0.284138, (12: 24.805877, ((13: 0.000004, (18: 0.000004, 19: 0.000004, 20: 0.000004, 21: 0.000004, 4: 0.000004, 5: 0.000004): 0.000004): 0.000004, 7: 0.000004): 0.000004): 0.000004): 0.000004, 14: 0.000004): 20.026125, 2: 0.000004): 0.000004);
(C1: 5.255939, C16: 0.000004, (((((C10: 0.000004, C11: 0.000004, C15: 0.000004, C3: 0.000004, C8: 0.000004, C9: 0.000004): 0.284138, C17: 0.000004, C6: 0.000004): 0.284138, (C12: 24.805877, ((C13: 0.000004, (C18: 0.000004, C19: 0.000004, C20: 0.000004, C21: 0.000004, C4: 0.000004, C5: 0.000004): 0.000004): 0.000004, C7: 0.000004): 0.000004): 0.000004): 0.000004, C14: 0.000004): 20.026125, C2: 0.000004): 0.000004);
Detailed output identifying parameters
kappa (ts/tv) = 190.59703
MLEs of dN/dS (w) for site classes (K=3)
p: 0.70973 0.00000 0.29027
w: 0.67506 1.00000 999.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
22..1 5.256 17.0 25.0 290.4557 4.3042 0.0148 73.2 0.4
22..16 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
22..23 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
23..24 20.026 17.0 25.0 290.4557 16.4000 0.0565 279.0 1.4
24..25 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
25..26 0.284 17.0 25.0 290.4557 0.2327 0.0008 4.0 0.0
26..27 0.284 17.0 25.0 290.4557 0.2327 0.0008 4.0 0.0
27..10 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
27..11 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
27..15 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
27..3 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
27..8 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
27..9 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
26..17 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
26..6 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
25..28 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
28..12 24.806 17.0 25.0 290.4557 20.3143 0.0699 345.5 1.7
28..29 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
29..30 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
30..13 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
30..31 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
31..18 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
31..19 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
31..20 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
31..21 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
31..4 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
31..5 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
29..7 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
24..14 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
23..2 0.000 17.0 25.0 290.4557 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
9 L 1.000** 998.874
10 Y 1.000** 999.000
12 L 1.000** 998.852
14 N 1.000** 999.000
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
2 L 0.500 5.298 +- 4.641
5 S 0.860 8.637 +- 3.247
6 L 0.500 5.298 +- 4.641
9 L 0.992** 9.830 +- 1.211
10 Y 1.000** 9.902 +- 0.910
12 L 0.986* 9.782 +- 1.377
14 N 0.997** 9.881 +- 1.006
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 0.124 0.118 0.112 0.106 0.101 0.096 0.092 0.088 0.084 0.081
w2: 0.000 0.000 0.000 0.000 0.002 0.010 0.033 0.096 0.251 0.607
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.001 0.000 0.000
0.003 0.001 0.001 0.000 0.000
0.009 0.005 0.003 0.001 0.001 0.000 0.000
0.015 0.011 0.009 0.005 0.004 0.001 0.001 0.000 0.000
0.020 0.018 0.017 0.012 0.010 0.006 0.004 0.001 0.001 0.000 0.000
0.021 0.022 0.022 0.020 0.018 0.013 0.011 0.006 0.004 0.001 0.001 0.000 0.000
0.017 0.021 0.023 0.024 0.025 0.022 0.020 0.014 0.012 0.006 0.004 0.001 0.001 0.000 0.000
0.011 0.016 0.020 0.024 0.026 0.027 0.027 0.024 0.022 0.015 0.012 0.006 0.004 0.001 0.001 0.000 0.000
0.005 0.009 0.013 0.019 0.023 0.027 0.030 0.030 0.030 0.026 0.023 0.016 0.013 0.007 0.004 0.001 0.001 0.000 0.000
sum of density on p0-p1 = 1.000000
Time used: 1:58
Model 7: beta (10 categories)
TREE # 1: (1, 16, (((((10, 11, 15, 3, 8, 9), 17, 6), (12, ((13, (18, 19, 20, 21, 4, 5)), 7))), 14), 2)); MP score: 11
lnL(ntime: 30 np: 33): -121.238491 +0.000000
22..1 22..16 22..23 23..24 24..25 25..26 26..27 27..10 27..11 27..15 27..3 27..8 27..9 26..17 26..6 25..28 28..12 28..29 29..30 30..13 30..31 31..18 31..19 31..20 31..21 31..4 31..5 29..7 24..14 23..2
0.277468 0.000004 0.000004 0.458855 0.000004 0.074982 0.074982 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.584654 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 1.492311 0.005000 0.007504
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.471042
(1: 0.277468, 16: 0.000004, (((((10: 0.000004, 11: 0.000004, 15: 0.000004, 3: 0.000004, 8: 0.000004, 9: 0.000004): 0.074982, 17: 0.000004, 6: 0.000004): 0.074982, (12: 0.584654, ((13: 0.000004, (18: 0.000004, 19: 0.000004, 20: 0.000004, 21: 0.000004, 4: 0.000004, 5: 0.000004): 0.000004): 0.000004, 7: 0.000004): 0.000004): 0.000004): 0.000004, 14: 0.000004): 0.458855, 2: 0.000004): 0.000004);
(C1: 0.277468, C16: 0.000004, (((((C10: 0.000004, C11: 0.000004, C15: 0.000004, C3: 0.000004, C8: 0.000004, C9: 0.000004): 0.074982, C17: 0.000004, C6: 0.000004): 0.074982, (C12: 0.584654, ((C13: 0.000004, (C18: 0.000004, C19: 0.000004, C20: 0.000004, C21: 0.000004, C4: 0.000004, C5: 0.000004): 0.000004): 0.000004, C7: 0.000004): 0.000004): 0.000004): 0.000004, C14: 0.000004): 0.458855, C2: 0.000004): 0.000004);
Detailed output identifying parameters
kappa (ts/tv) = 1.49231
Parameters in M7 (beta):
p = 0.00500 q = 0.00750
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 1.00000 1.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
22..1 0.277 25.9 16.1 0.4000 0.0588 0.1469 1.5 2.4
22..16 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
22..23 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
23..24 0.459 25.9 16.1 0.4000 0.0972 0.2429 2.5 3.9
24..25 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
25..26 0.075 25.9 16.1 0.4000 0.0159 0.0397 0.4 0.6
26..27 0.075 25.9 16.1 0.4000 0.0159 0.0397 0.4 0.6
27..10 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
27..11 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
27..15 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
27..3 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
27..8 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
27..9 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
26..17 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
26..6 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
25..28 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
28..12 0.585 25.9 16.1 0.4000 0.1238 0.3095 3.2 5.0
28..29 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
29..30 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
30..13 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
30..31 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
31..18 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
31..19 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
31..20 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
31..21 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
31..4 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
31..5 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
29..7 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
24..14 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
23..2 0.000 25.9 16.1 0.4000 0.0000 0.0000 0.0 0.0
Time used: 8:29
Model 8: beta&w>1 (11 categories)
TREE # 1: (1, 16, (((((10, 11, 15, 3, 8, 9), 17, 6), (12, ((13, (18, 19, 20, 21, 4, 5)), 7))), 14), 2)); MP score: 11
lnL(ntime: 30 np: 35): -112.939663 +0.000000
22..1 22..16 22..23 23..24 24..25 25..26 26..27 27..10 27..11 27..15 27..3 27..8 27..9 26..17 26..6 25..28 28..12 28..29 29..30 30..13 30..31 31..18 31..19 31..20 31..21 31..4 31..5 29..7 24..14 23..2
5.774269 0.000004 0.000004 22.582063 0.000004 0.292301 0.292300 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 27.645771 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 211.441644 0.709509 0.005000 0.005000 999.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 56.586805
(1: 5.774269, 16: 0.000004, (((((10: 0.000004, 11: 0.000004, 15: 0.000004, 3: 0.000004, 8: 0.000004, 9: 0.000004): 0.292300, 17: 0.000004, 6: 0.000004): 0.292301, (12: 27.645771, ((13: 0.000004, (18: 0.000004, 19: 0.000004, 20: 0.000004, 21: 0.000004, 4: 0.000004, 5: 0.000004): 0.000004): 0.000004, 7: 0.000004): 0.000004): 0.000004): 0.000004, 14: 0.000004): 22.582063, 2: 0.000004): 0.000004);
(C1: 5.774269, C16: 0.000004, (((((C10: 0.000004, C11: 0.000004, C15: 0.000004, C3: 0.000004, C8: 0.000004, C9: 0.000004): 0.292300, C17: 0.000004, C6: 0.000004): 0.292301, (C12: 27.645771, ((C13: 0.000004, (C18: 0.000004, C19: 0.000004, C20: 0.000004, C21: 0.000004, C4: 0.000004, C5: 0.000004): 0.000004): 0.000004, C7: 0.000004): 0.000004): 0.000004): 0.000004, C14: 0.000004): 22.582063, C2: 0.000004): 0.000004);
Detailed output identifying parameters
kappa (ts/tv) = 211.44164
Parameters in M8 (beta&w>1):
p0 = 0.70951 p = 0.00500 q = 0.00500
(p1 = 0.29049) w = 999.00000
MLEs of dN/dS (w) for site classes (K=11)
p: 0.07095 0.07095 0.07095 0.07095 0.07095 0.07095 0.07095 0.07095 0.07095 0.07095 0.29049
w: 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 1.00000 1.00000 1.00000 1.00000 999.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
22..1 5.774 17.0 25.0 290.5555 4.7336 0.0163 80.4 0.4
22..16 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
22..23 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
23..24 22.582 17.0 25.0 290.5555 18.5122 0.0637 314.6 1.6
24..25 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
25..26 0.292 17.0 25.0 290.5555 0.2396 0.0008 4.1 0.0
26..27 0.292 17.0 25.0 290.5555 0.2396 0.0008 4.1 0.0
27..10 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
27..11 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
27..15 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
27..3 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
27..8 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
27..9 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
26..17 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
26..6 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
25..28 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
28..12 27.646 17.0 25.0 290.5555 22.6633 0.0780 385.1 2.0
28..29 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
29..30 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
30..13 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
30..31 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
31..18 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
31..19 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
31..20 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
31..21 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
31..4 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
31..5 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
29..7 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
24..14 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
23..2 0.000 17.0 25.0 290.5555 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
9 L 1.000** 998.846
10 Y 1.000** 999.000
12 L 1.000** 998.864
14 N 1.000** 999.000
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
2 L 0.557 5.692 +- 4.732
5 S 0.914 9.096 +- 2.723
6 L 0.557 5.692 +- 4.732
9 L 0.997** 9.855 +- 1.063
10 Y 1.000** 9.886 +- 0.924
12 L 0.994** 9.828 +- 1.175
14 N 0.999** 9.878 +- 0.964
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.021 0.071 0.141 0.201 0.220 0.184 0.112 0.044 0.008 0.000
p : 0.134 0.119 0.109 0.102 0.097 0.093 0.090 0.087 0.085 0.083
q : 0.072 0.083 0.091 0.097 0.101 0.105 0.109 0.111 0.114 0.116
ws: 0.000 0.000 0.000 0.001 0.003 0.011 0.035 0.098 0.252 0.601
Time used: 14:52
Model 1: NearlyNeutral -122.888608
Model 2: PositiveSelection -112.932741
Model 7: beta -121.238491
Model 8: beta&w>1 -112.939663
Model 2 vs 1 19.911734
Additional information for M1 vs M2:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
9 L 1.000** 998.874
10 Y 1.000** 999.000
12 L 1.000** 998.852
14 N 1.000** 999.000
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
2 L 0.500 5.298 +- 4.641
5 S 0.860 8.637 +- 3.247
6 L 0.500 5.298 +- 4.641
9 L 0.992** 9.830 +- 1.211
10 Y 1.000** 9.902 +- 0.910
12 L 0.986* 9.782 +- 1.377
14 N 0.997** 9.881 +- 1.006
Model 8 vs 7 16.597656
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
9 L 1.000** 998.846
10 Y 1.000** 999.000
12 L 1.000** 998.864
14 N 1.000** 999.000
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
2 L 0.557 5.692 +- 4.732
5 S 0.914 9.096 +- 2.723
6 L 0.557 5.692 +- 4.732
9 L 0.997** 9.855 +- 1.063
10 Y 1.000** 9.886 +- 0.924
12 L 0.994** 9.828 +- 1.175
14 N 0.999** 9.878 +- 0.964
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
