--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -4059.59 -4082.26
2 -4060.52 -4082.39
--------------------------------------
TOTAL -4059.95 -4082.33
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.960602 0.007811 0.792385 1.137121 0.952958 926.70 1081.49 1.000
r(A<->C){all} 0.094895 0.000514 0.050050 0.136239 0.093599 853.85 867.14 1.000
r(A<->G){all} 0.243614 0.000778 0.192406 0.301975 0.242388 803.17 989.25 1.002
r(A<->T){all} 0.074763 0.000197 0.050808 0.104558 0.074004 1115.77 1165.61 1.000
r(C<->G){all} 0.110207 0.000535 0.067374 0.156350 0.108718 687.95 774.38 1.000
r(C<->T){all} 0.405297 0.001036 0.343873 0.470783 0.405172 780.61 833.83 1.000
r(G<->T){all} 0.071223 0.000206 0.044967 0.100101 0.070492 1136.62 1206.31 1.000
pi(A){all} 0.251114 0.000116 0.231695 0.273109 0.251028 1039.61 1087.09 1.000
pi(C){all} 0.185638 0.000085 0.168074 0.203668 0.185686 1045.73 1171.41 1.001
pi(G){all} 0.217639 0.000106 0.197029 0.237841 0.217456 1090.43 1113.08 1.000
pi(T){all} 0.345608 0.000137 0.322877 0.368387 0.345575 1045.13 1103.29 1.000
alpha{1,2} 0.235626 0.001746 0.164660 0.325512 0.231239 1067.27 1193.31 1.000
alpha{3} 3.232228 1.666248 1.283614 5.837711 2.956414 1225.80 1252.38 1.000
pinvar{all} 0.086540 0.003210 0.000105 0.190028 0.079067 1135.83 1235.34 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -2683.980277
Model 2: PositiveSelection -2683.980277
Model 7: beta -2680.075031
Model 8: beta&w>1 -2680.075070
Model 2 vs 1 0
Model 8 vs 7 -.000078
-- Starting log on Wed Nov 02 20:10:40 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.09 sec, SCORE=1000, Nseq=15, Len=443
C1 MGRMCIAMAPRTLLLLIGCQLVFGFNEPINIVSHLNDDWFLFGDSRSDCT
C2 MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCT
C3 --------------------------------------------------
C4 --------------------------------------------------
C5 --------------------------------------------------
C6 --------------------------------------------------
C7 --------------------------------------------------
C8 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C9 MACTD-AMAPRTLLLVLSLGYALGFNEPLNVVSHLNDDWFLFGDSRSDCN
C10 MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C11 MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCT
C12 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C13 MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIFSHLNDDWFLFGDSRSDCT
C14 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C15 MGSTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C1 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C2 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C3 --------------------------------------------------
C4 --------------------------------------------------
C5 --------------------------------------------------
C6 --------------------------------------------------
C7 --------------------------------------------------
C8 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C9 HINNLSHQNYNYMDLNPELCKSGKISAKAGNSLFKSFHFTDFYNYTGEGS
C10 YVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGD
C11 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C12 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C13 YVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGD
C14 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C15 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C1 QIIFYEGVNFSPSHGFKCLVEGDNNKWMGNKARFYALLYKKMAQYRSLSF
C2 QIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSF
C3 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C4 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C5 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C6 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C7 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C8 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C9 QIIFYEGVNFTPYVGFKCLNNGDNSRWMGNKARFYTQLYQKMAHYRSLSI
C10 QVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C11 QIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSF
C12 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C13 QVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C14 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C15 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKAAFYARVYEKMAQYRSLSF
***** **: :*:***:*****:
C1 VTVPYAYGGNAKPTSICKDK----TLTLNNPTFISKES--VDYYYVSEAN
C2 VIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEAN
C3 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C4 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C5 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C6 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C7 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C8 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C9 INITYTYNGSAGPVSMCKHTANGATLTLNNPTFIGKEASAPNYYYGSEAN
C10 VNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEAN
C11 VIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEAN
C12 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C13 VNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEAN
C14 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C15 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
: :.*:*.*.* *.*:**.. **********.**: :*** ****
C1 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNIDTGVLYGFN
C2 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C3 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C4 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C5 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C6 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C7 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C8 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C9 FTLHGCDEFIVPLCVFNGEYLSS-----KLYYDDSQYYYNMDTGVLYGFN
C10 FTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C11 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C12 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C13 FTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C14 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C15 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGLN
*** ********** ***. .* : ** *** ***:* *****:*
C1 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C2 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C3 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C4 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C5 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C6 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C7 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C8 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C9 STLNI-----TIGLDLTCIYLLLTPGNYKSISNELLLTMPSKAICLRKAK
C10 STLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C11 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C12 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C13 STLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C14 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C15 CTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
.**:: ****** ** *******::* * **::*******:*.*
C1 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C2 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C3 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C4 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C5 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C6 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C7 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C8 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C9 AFTPVQVVDSRWHSNRQSDNMTAIACQLPYCYFRNTTSDYNG-VYDSHHG
C10 SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C11 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C12 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C13 SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C14 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C15 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
* ********* * ******** *******:****:::*.* .:* ***
C1 DFYFRQLLSGLLYNVSCIAQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C2 DFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C3 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C4 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C5 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C6 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C7 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C8 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C9 DAGFTSVLAGLMYNVSCIAQQGAFVYNNVSSSWPQYPYGHCPTAANIGFI
C10 DFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYM
C11 DFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C12 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C13 DFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYM
C14 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C15 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
* * .:*:**: *****:*****:****** ** * **:********::
C1 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C2 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C3 APVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA
C4 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C5 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C6 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C7 APVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA
C8 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
C9 APVCMYDPLPVILLGVLLGIAVLIIVFLLFYFMTDSGVRLHEI
C10 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C11 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C12 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C13 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C14 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
C15 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
****:******:*********** ****::***:**.*****
-- Starting log on Wed Nov 02 20:12:37 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.14 sec, SCORE=995, Nseq=15, Len=443
C1 MGRMCIAMAPRTLLLLIGCQLVFGFNEPINIVSHLNDDWFLFGDSRSDCT
C2 MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCT
C3 --------------------------------------------------
C4 --------------------------------------------------
C5 --------------------------------------------------
C6 --------------------------------------------------
C7 --------------------------------------------------
C8 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C9 MACTD-AMAPRTLLLVLSLGYALGFNEPLNVVSHLNDDWFLFGDSRSDCN
C10 MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C11 MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCT
C12 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C13 MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIFSHLNDDWFLFGDSRSDCT
C14 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C15 MGSTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C1 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C2 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C3 --------------------------------------------------
C4 --------------------------------------------------
C5 --------------------------------------------------
C6 --------------------------------------------------
C7 --------------------------------------------------
C8 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C9 HINNLSHQNYNYMDLNPELCKSGKISAKAGNSLFKSFHFTDFYNYTGEGS
C10 YVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGD
C11 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C12 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C13 YVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGD
C14 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C15 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C1 QIIFYEGVNFSPSHGFKCLVEGDNNKWMGNKARFYALLYKKMAQYRSLSF
C2 QIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSF
C3 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C4 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C5 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C6 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C7 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C8 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C9 QIIFYEGVNFTPYVGFKCLNNGDNSRWMGNKARFYTQLYQKMAHYRSLSI
C10 QVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C11 QIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSF
C12 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C13 QVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C14 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C15 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKAAFYARVYEKMAQYRSLSF
***** **: :*:***:*****:
C1 VTVPYAYGGNAKPTSICKDK----TLTLNNPTFISKES--VDYYYVSEAN
C2 VIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEAN
C3 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C4 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C5 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C6 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C7 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C8 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C9 INITYTYNGSAGPVSMCKHTANGATLTLNNPTFIGKEASAPNYYYGSEAN
C10 VNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEAN
C11 VIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEAN
C12 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C13 VNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEAN
C14 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C15 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
: :.*:*.*.* *.*:**.. **********.**: :*** ****
C1 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNIDTGVLYGFN
C2 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C3 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C4 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C5 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C6 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C7 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C8 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C9 FTLHGCDEFIVPLCVFNGEYLSS-----KLYYDDSQYYYNMDTGVLYGFN
C10 FTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C11 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C12 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C13 FTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C14 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C15 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGLN
*** ********** ***. .* : ** *** ***:* *****:*
C1 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C2 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C3 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C4 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C5 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C6 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C7 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C8 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C9 STLNI-----TIGLDLTCIYLLLTPGNYKSISNELLLTMPSKAICLRKAK
C10 STLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C11 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C12 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C13 STLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C14 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C15 CTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
.**:: ****** ** *******::* * **::*******:*.*
C1 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C2 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C3 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C4 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C5 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C6 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C7 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C8 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C9 AFTPVQVVDSRWHSNRQSDNMTAIACQLPYCYFRNTTSDYNG-VYDSHHG
C10 SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C11 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C12 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C13 SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C14 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C15 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
* ********* * ******** *******:****:::*.* .:* ***
C1 DFYFRQLLSGLLYNVSCIAQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C2 DFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C3 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C4 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C5 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C6 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C7 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C8 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C9 DAGFTSVLAGLMYNVSCIAQQGAFVYNNVSSSWPQYPYGHCPTAANIGFI
C10 DFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYM
C11 DFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C12 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C13 DFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYM
C14 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C15 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
* * .:*:**: *****:*****:****** ** * **:********::
C1 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C2 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C3 APVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA
C4 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C5 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C6 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C7 APVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA
C8 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
C9 APVCMYDPLPVILLGVLLGIAVLIIVFLLFYFMTDSGVRLHEI
C10 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C11 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C12 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C13 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C14 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
C15 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
****:******:*********** ****::***:**.*****
-- Starting log on Wed Nov 02 21:01:01 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result/gapped_alignment/codeml,A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 15 taxa and 1329 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C1
Taxon 2 -> C10
Taxon 3 -> C11
Taxon 4 -> C12
Taxon 5 -> C13
Taxon 6 -> C14
Taxon 7 -> C15
Taxon 8 -> C2
Taxon 9 -> C3
Taxon 10 -> C4
Taxon 11 -> C5
Taxon 12 -> C6
Taxon 13 -> C7
Taxon 14 -> C8
Taxon 15 -> C9
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1667422868
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 502311935
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 8943948122
Seed = 1500844206
Swapseed = 1667422868
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 73 unique site patterns
Division 2 has 64 unique site patterns
Division 3 has 133 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -6896.311289 -- 49.806583
Chain 2 -- -6445.692252 -- 49.806583
Chain 3 -- -6745.063659 -- 49.806583
Chain 4 -- -6962.794015 -- 49.806583
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -6963.881920 -- 49.806583
Chain 2 -- -7315.324007 -- 49.806583
Chain 3 -- -6804.125444 -- 49.806583
Chain 4 -- -7040.921376 -- 49.806583
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-6896.311] (-6445.692) (-6745.064) (-6962.794) * [-6963.882] (-7315.324) (-6804.125) (-7040.921)
1000 -- (-4203.210) (-4249.892) [-4184.284] (-4228.417) * [-4156.699] (-4198.288) (-4193.532) (-4170.721) -- 0:00:00
2000 -- (-4104.661) [-4106.004] (-4091.120) (-4100.517) * [-4070.222] (-4109.552) (-4111.457) (-4094.074) -- 0:08:19
3000 -- [-4073.566] (-4090.058) (-4077.601) (-4076.388) * [-4061.419] (-4081.502) (-4089.648) (-4077.362) -- 0:11:04
4000 -- (-4079.046) (-4080.464) [-4077.542] (-4067.360) * [-4074.352] (-4075.867) (-4081.693) (-4071.070) -- 0:12:27
5000 -- (-4084.226) (-4067.260) (-4069.448) [-4073.258] * (-4076.222) (-4077.938) [-4065.112] (-4081.530) -- 0:13:16
Average standard deviation of split frequencies: 0.098209
6000 -- (-4084.006) (-4069.929) [-4068.686] (-4071.647) * (-4082.599) (-4068.018) (-4072.417) [-4066.056] -- 0:13:48
7000 -- (-4074.104) [-4064.961] (-4063.977) (-4070.827) * (-4075.410) (-4069.522) [-4059.110] (-4073.732) -- 0:14:11
8000 -- (-4077.759) (-4071.433) [-4076.371] (-4074.410) * [-4077.750] (-4068.266) (-4067.678) (-4078.519) -- 0:14:28
9000 -- (-4071.872) [-4070.453] (-4076.826) (-4071.387) * (-4069.431) [-4061.026] (-4071.515) (-4091.428) -- 0:14:40
10000 -- (-4076.329) (-4071.146) (-4067.036) [-4059.339] * (-4073.453) (-4069.730) [-4067.560] (-4074.735) -- 0:14:51
Average standard deviation of split frequencies: 0.102104
11000 -- (-4074.468) [-4076.115] (-4073.379) (-4084.328) * [-4076.728] (-4067.470) (-4073.819) (-4078.629) -- 0:14:59
12000 -- [-4064.954] (-4069.311) (-4065.429) (-4062.613) * [-4069.277] (-4074.778) (-4078.729) (-4062.141) -- 0:15:05
13000 -- (-4071.745) [-4069.841] (-4087.077) (-4060.141) * (-4084.551) (-4069.543) (-4085.476) [-4070.589] -- 0:15:11
14000 -- [-4063.060] (-4085.410) (-4070.756) (-4070.209) * (-4078.867) (-4065.680) (-4075.903) [-4057.374] -- 0:15:15
15000 -- (-4066.509) (-4069.254) [-4064.317] (-4070.715) * (-4085.800) (-4067.986) (-4060.770) [-4081.858] -- 0:14:13
Average standard deviation of split frequencies: 0.068746
16000 -- (-4079.323) [-4073.462] (-4068.046) (-4071.716) * (-4076.359) (-4070.124) [-4064.344] (-4068.603) -- 0:14:21
17000 -- (-4069.248) [-4060.436] (-4068.183) (-4065.554) * (-4068.384) (-4067.165) [-4066.392] (-4077.296) -- 0:14:27
18000 -- (-4065.914) [-4069.319] (-4059.457) (-4057.217) * (-4083.584) (-4074.277) (-4077.491) [-4069.088] -- 0:14:32
19000 -- (-4062.454) (-4075.322) (-4082.874) [-4062.228] * (-4078.040) (-4080.768) (-4072.839) [-4073.595] -- 0:14:37
20000 -- (-4077.407) (-4075.658) [-4063.246] (-4074.236) * (-4061.697) [-4073.977] (-4067.903) (-4090.012) -- 0:14:42
Average standard deviation of split frequencies: 0.074816
21000 -- [-4067.454] (-4083.678) (-4071.927) (-4058.406) * (-4082.471) [-4075.120] (-4071.196) (-4074.994) -- 0:14:45
22000 -- (-4075.415) (-4057.930) (-4079.578) [-4069.473] * (-4068.588) (-4062.734) [-4063.792] (-4074.993) -- 0:14:49
23000 -- [-4068.605] (-4072.145) (-4062.212) (-4067.429) * [-4070.025] (-4067.894) (-4061.800) (-4073.043) -- 0:14:52
24000 -- (-4074.852) [-4066.990] (-4063.653) (-4069.300) * [-4067.032] (-4077.367) (-4069.381) (-4075.577) -- 0:14:54
25000 -- (-4068.097) (-4074.691) [-4069.193] (-4070.516) * (-4069.370) (-4079.481) [-4063.547] (-4070.046) -- 0:14:57
Average standard deviation of split frequencies: 0.047270
26000 -- (-4063.441) (-4066.165) [-4068.823] (-4067.128) * (-4072.520) (-4075.229) (-4075.943) [-4057.745] -- 0:14:59
27000 -- (-4068.322) [-4070.172] (-4071.889) (-4069.452) * (-4077.141) (-4067.898) [-4067.215] (-4076.941) -- 0:14:24
28000 -- (-4079.243) (-4071.668) [-4065.924] (-4065.134) * (-4076.115) [-4069.907] (-4075.323) (-4064.537) -- 0:14:27
29000 -- [-4080.536] (-4063.351) (-4074.068) (-4071.001) * (-4072.229) (-4074.879) [-4064.462] (-4070.094) -- 0:14:30
30000 -- [-4063.951] (-4067.042) (-4076.298) (-4064.125) * (-4078.274) (-4072.333) (-4086.560) [-4064.234] -- 0:14:33
Average standard deviation of split frequencies: 0.033109
31000 -- (-4065.846) (-4072.546) [-4053.896] (-4073.049) * (-4078.475) (-4066.714) [-4077.458] (-4073.235) -- 0:14:35
32000 -- (-4068.150) (-4078.055) [-4062.500] (-4064.874) * [-4066.412] (-4080.354) (-4064.107) (-4074.669) -- 0:14:37
33000 -- (-4064.443) (-4081.257) (-4069.966) [-4070.926] * (-4079.754) (-4064.916) (-4073.368) [-4070.837] -- 0:14:39
34000 -- (-4075.919) (-4069.430) [-4063.045] (-4077.622) * (-4083.365) (-4074.624) (-4073.751) [-4073.931] -- 0:14:40
35000 -- (-4077.237) (-4072.269) (-4073.316) [-4070.657] * (-4075.558) (-4071.811) [-4069.115] (-4077.344) -- 0:14:42
Average standard deviation of split frequencies: 0.038236
36000 -- [-4072.774] (-4067.654) (-4069.688) (-4077.292) * (-4068.940) (-4067.210) [-4059.833] (-4076.728) -- 0:14:43
37000 -- [-4067.894] (-4076.498) (-4081.611) (-4082.252) * (-4066.068) (-4074.702) [-4072.968] (-4069.343) -- 0:14:44
38000 -- [-4059.077] (-4079.947) (-4077.800) (-4064.649) * (-4093.411) (-4071.817) (-4072.067) [-4072.099] -- 0:14:46
39000 -- [-4069.653] (-4062.844) (-4071.211) (-4069.625) * (-4069.027) [-4074.901] (-4073.201) (-4069.505) -- 0:14:47
40000 -- (-4072.938) [-4065.161] (-4068.469) (-4076.478) * (-4069.933) (-4076.061) (-4071.451) [-4071.760] -- 0:14:48
Average standard deviation of split frequencies: 0.025116
41000 -- (-4077.055) [-4065.999] (-4073.233) (-4075.098) * (-4072.792) (-4062.355) (-4086.555) [-4065.144] -- 0:14:48
42000 -- (-4072.838) [-4064.506] (-4068.955) (-4070.218) * (-4069.469) [-4061.949] (-4069.006) (-4062.658) -- 0:14:49
43000 -- (-4076.336) [-4058.607] (-4068.482) (-4072.537) * (-4084.028) [-4071.953] (-4065.212) (-4075.518) -- 0:14:50
44000 -- (-4077.602) [-4069.001] (-4085.606) (-4066.467) * (-4067.792) [-4061.284] (-4070.564) (-4068.427) -- 0:14:50
45000 -- [-4073.119] (-4071.477) (-4069.400) (-4078.409) * (-4069.265) (-4079.909) (-4068.254) [-4078.344] -- 0:14:30
Average standard deviation of split frequencies: 0.033613
46000 -- (-4075.850) [-4066.878] (-4081.843) (-4072.941) * [-4067.578] (-4071.234) (-4066.377) (-4063.973) -- 0:14:31
47000 -- (-4064.509) [-4072.307] (-4069.499) (-4071.333) * (-4082.356) [-4068.468] (-4061.224) (-4069.270) -- 0:14:31
48000 -- (-4077.430) [-4068.874] (-4070.850) (-4066.569) * (-4073.623) (-4073.061) (-4066.999) [-4071.006] -- 0:14:32
49000 -- (-4073.450) [-4064.318] (-4077.964) (-4069.120) * [-4065.365] (-4066.799) (-4063.455) (-4081.032) -- 0:14:33
50000 -- [-4062.519] (-4061.070) (-4065.626) (-4068.042) * (-4075.278) (-4070.217) [-4061.483] (-4075.696) -- 0:14:34
Average standard deviation of split frequencies: 0.036500
51000 -- [-4065.294] (-4059.496) (-4083.502) (-4068.556) * [-4071.651] (-4066.348) (-4078.664) (-4068.162) -- 0:14:34
52000 -- [-4072.973] (-4061.656) (-4068.018) (-4064.775) * [-4077.129] (-4068.469) (-4076.074) (-4075.752) -- 0:14:35
53000 -- [-4065.023] (-4073.279) (-4074.256) (-4066.106) * (-4067.107) (-4086.201) (-4074.377) [-4074.932] -- 0:14:35
54000 -- (-4072.440) (-4071.661) (-4079.102) [-4066.540] * (-4077.076) (-4068.976) (-4061.464) [-4063.070] -- 0:14:35
55000 -- (-4071.847) (-4068.391) [-4068.524] (-4082.044) * (-4066.199) (-4079.907) [-4067.181] (-4071.194) -- 0:14:36
Average standard deviation of split frequencies: 0.042413
56000 -- [-4067.848] (-4069.748) (-4079.286) (-4064.504) * (-4067.704) (-4070.225) (-4074.922) [-4060.450] -- 0:14:36
57000 -- (-4068.914) [-4061.643] (-4062.270) (-4080.357) * (-4068.967) [-4074.777] (-4079.579) (-4078.998) -- 0:14:36
58000 -- (-4064.813) (-4071.959) [-4059.486] (-4083.743) * (-4067.817) (-4068.318) [-4067.868] (-4084.575) -- 0:14:37
59000 -- (-4085.814) (-4061.665) [-4068.796] (-4071.282) * (-4060.527) (-4074.800) (-4071.560) [-4072.526] -- 0:14:21
60000 -- (-4067.302) [-4068.270] (-4062.770) (-4069.689) * (-4075.679) [-4068.924] (-4071.073) (-4064.675) -- 0:14:21
Average standard deviation of split frequencies: 0.043514
61000 -- [-4066.186] (-4067.190) (-4070.747) (-4071.072) * [-4061.351] (-4062.238) (-4081.870) (-4074.581) -- 0:14:22
62000 -- [-4062.335] (-4063.458) (-4082.938) (-4084.465) * (-4077.873) [-4066.663] (-4072.054) (-4080.709) -- 0:14:22
63000 -- [-4070.684] (-4068.314) (-4070.783) (-4071.018) * (-4067.512) (-4071.133) [-4064.218] (-4073.348) -- 0:14:22
64000 -- [-4061.239] (-4077.891) (-4070.870) (-4075.303) * [-4067.631] (-4082.248) (-4070.831) (-4070.864) -- 0:14:22
65000 -- (-4089.821) [-4071.584] (-4067.312) (-4076.495) * [-4064.381] (-4062.311) (-4070.009) (-4083.370) -- 0:14:23
Average standard deviation of split frequencies: 0.039558
66000 -- (-4070.865) (-4067.123) (-4072.328) [-4069.929] * (-4067.048) (-4065.297) (-4077.013) [-4071.867] -- 0:14:23
67000 -- (-4069.289) (-4066.113) (-4070.664) [-4062.978] * (-4065.526) (-4077.917) [-4061.412] (-4078.171) -- 0:14:23
68000 -- [-4065.729] (-4071.373) (-4062.922) (-4069.185) * (-4084.727) [-4070.664] (-4073.947) (-4081.217) -- 0:14:23
69000 -- (-4077.733) [-4070.175] (-4083.425) (-4072.317) * [-4071.880] (-4082.255) (-4064.478) (-4071.909) -- 0:14:23
70000 -- [-4067.688] (-4066.094) (-4065.682) (-4066.972) * [-4067.184] (-4071.782) (-4071.595) (-4081.061) -- 0:14:23
Average standard deviation of split frequencies: 0.037890
71000 -- (-4082.897) [-4070.379] (-4080.752) (-4058.020) * (-4069.035) [-4069.586] (-4065.519) (-4068.530) -- 0:14:23
72000 -- (-4073.583) (-4070.579) (-4076.630) [-4058.652] * (-4060.938) (-4064.772) [-4062.577] (-4079.129) -- 0:14:36
73000 -- (-4077.060) (-4074.292) [-4068.622] (-4070.183) * [-4067.800] (-4069.490) (-4073.881) (-4086.847) -- 0:14:36
74000 -- (-4074.269) (-4084.123) [-4063.973] (-4055.776) * (-4080.758) (-4067.892) (-4071.982) [-4077.836] -- 0:14:23
75000 -- (-4059.222) (-4064.081) [-4057.650] (-4073.628) * (-4073.471) (-4072.587) (-4075.830) [-4076.651] -- 0:14:23
Average standard deviation of split frequencies: 0.033598
76000 -- (-4076.756) (-4069.201) (-4073.863) [-4067.554] * (-4080.777) (-4069.808) (-4062.922) [-4066.169] -- 0:14:23
77000 -- [-4067.289] (-4069.260) (-4078.910) (-4076.348) * (-4081.246) (-4074.983) [-4066.646] (-4075.715) -- 0:14:23
78000 -- (-4067.184) (-4074.136) (-4072.499) [-4059.437] * (-4062.182) (-4073.096) (-4070.095) [-4067.130] -- 0:14:22
79000 -- [-4071.905] (-4062.021) (-4077.353) (-4078.804) * [-4053.935] (-4080.972) (-4070.163) (-4080.887) -- 0:14:22
80000 -- (-4075.029) (-4075.230) [-4069.751] (-4065.192) * [-4066.140] (-4084.315) (-4078.725) (-4068.911) -- 0:14:22
Average standard deviation of split frequencies: 0.029950
81000 -- [-4068.421] (-4075.584) (-4080.887) (-4067.913) * (-4077.133) [-4073.395] (-4070.223) (-4074.335) -- 0:14:22
82000 -- (-4074.497) (-4074.822) [-4070.099] (-4073.377) * (-4075.116) (-4075.957) (-4071.154) [-4066.179] -- 0:14:22
83000 -- (-4075.722) (-4071.119) [-4076.901] (-4072.156) * (-4068.066) (-4070.493) (-4066.769) [-4062.117] -- 0:14:21
84000 -- (-4075.654) (-4079.856) (-4093.611) [-4061.593] * (-4081.635) (-4085.215) (-4072.153) [-4071.581] -- 0:14:21
85000 -- (-4080.335) (-4087.250) [-4065.216] (-4070.550) * (-4070.751) [-4061.669] (-4064.724) (-4079.042) -- 0:14:21
Average standard deviation of split frequencies: 0.028942
86000 -- [-4075.412] (-4077.132) (-4069.657) (-4066.906) * (-4073.849) (-4081.034) [-4072.099] (-4060.957) -- 0:14:20
87000 -- [-4063.920] (-4073.596) (-4076.847) (-4067.612) * (-4064.374) (-4075.312) (-4067.587) [-4068.441] -- 0:14:10
88000 -- (-4071.593) (-4082.091) (-4074.419) [-4064.820] * (-4076.978) (-4082.645) (-4073.580) [-4069.691] -- 0:14:09
89000 -- (-4074.857) (-4068.885) (-4074.601) [-4068.023] * (-4063.533) (-4082.119) (-4064.313) [-4060.957] -- 0:14:09
90000 -- [-4055.147] (-4072.745) (-4075.531) (-4065.373) * (-4064.376) (-4069.844) (-4075.899) [-4074.249] -- 0:14:09
Average standard deviation of split frequencies: 0.024188
91000 -- (-4071.840) (-4079.674) [-4066.411] (-4064.888) * [-4065.388] (-4081.331) (-4068.477) (-4076.370) -- 0:14:09
92000 -- (-4079.728) (-4072.702) (-4071.611) [-4062.733] * (-4055.919) (-4067.934) (-4064.661) [-4059.697] -- 0:14:08
93000 -- (-4069.612) (-4078.358) [-4067.139] (-4068.436) * (-4065.895) (-4075.228) (-4080.728) [-4069.518] -- 0:14:08
94000 -- (-4067.091) (-4074.358) [-4072.856] (-4073.326) * (-4059.906) (-4076.812) (-4076.918) [-4073.978] -- 0:14:08
95000 -- (-4073.470) (-4069.304) (-4069.292) [-4069.222] * (-4076.108) (-4083.014) [-4071.655] (-4074.530) -- 0:14:07
Average standard deviation of split frequencies: 0.018619
96000 -- (-4069.781) (-4078.393) [-4068.271] (-4069.401) * (-4081.083) (-4093.646) [-4074.502] (-4066.238) -- 0:14:07
97000 -- (-4079.888) [-4069.744] (-4067.996) (-4071.159) * (-4082.966) [-4067.584] (-4082.124) (-4070.740) -- 0:14:07
98000 -- (-4067.131) (-4076.674) (-4089.196) [-4068.259] * (-4076.552) [-4069.928] (-4081.397) (-4077.369) -- 0:14:06
99000 -- (-4078.094) (-4073.343) (-4085.699) [-4071.404] * (-4074.471) (-4069.974) (-4065.007) [-4061.465] -- 0:14:06
100000 -- (-4075.969) [-4065.844] (-4081.067) (-4075.646) * (-4067.755) [-4070.304] (-4072.869) (-4076.083) -- 0:14:06
Average standard deviation of split frequencies: 0.021378
101000 -- (-4072.338) (-4069.849) (-4076.490) [-4069.753] * [-4070.381] (-4069.528) (-4069.784) (-4080.675) -- 0:13:56
102000 -- (-4072.523) (-4069.242) (-4072.296) [-4065.425] * (-4079.289) [-4078.035] (-4080.544) (-4068.177) -- 0:13:56
103000 -- [-4087.813] (-4069.154) (-4076.125) (-4081.174) * [-4068.775] (-4074.740) (-4080.493) (-4075.163) -- 0:13:56
104000 -- (-4096.366) [-4063.937] (-4080.840) (-4065.641) * (-4074.056) [-4061.153] (-4081.292) (-4076.338) -- 0:13:55
105000 -- [-4062.935] (-4065.914) (-4074.876) (-4078.339) * (-4065.472) [-4064.235] (-4062.404) (-4073.263) -- 0:13:55
Average standard deviation of split frequencies: 0.019390
106000 -- (-4068.928) (-4065.902) [-4080.021] (-4086.313) * (-4077.160) (-4068.466) (-4068.559) [-4071.633] -- 0:13:54
107000 -- (-4078.050) (-4071.874) [-4061.573] (-4070.464) * (-4083.221) [-4075.124] (-4059.542) (-4074.524) -- 0:13:54
108000 -- (-4067.098) [-4069.658] (-4067.900) (-4086.878) * [-4063.254] (-4079.537) (-4066.460) (-4072.199) -- 0:13:54
109000 -- (-4071.521) (-4076.985) [-4074.369] (-4072.731) * (-4077.357) (-4086.436) (-4074.483) [-4068.779] -- 0:13:53
110000 -- [-4066.244] (-4067.192) (-4078.198) (-4075.992) * (-4069.290) (-4080.339) (-4074.433) [-4077.769] -- 0:13:53
Average standard deviation of split frequencies: 0.018913
111000 -- (-4067.679) (-4086.964) [-4065.455] (-4069.619) * (-4063.659) (-4065.290) (-4075.073) [-4064.769] -- 0:13:52
112000 -- (-4071.471) [-4063.367] (-4077.186) (-4063.961) * (-4072.923) (-4065.866) (-4070.716) [-4073.778] -- 0:13:52
113000 -- [-4073.130] (-4067.025) (-4078.543) (-4065.683) * (-4073.887) (-4073.208) [-4059.536] (-4070.420) -- 0:13:52
114000 -- (-4079.571) [-4067.536] (-4066.348) (-4059.692) * (-4074.931) (-4064.491) [-4073.974] (-4062.752) -- 0:13:43
115000 -- (-4078.935) [-4065.724] (-4070.558) (-4073.536) * (-4071.364) (-4068.956) (-4086.123) [-4067.802] -- 0:13:43
Average standard deviation of split frequencies: 0.019994
116000 -- (-4080.590) (-4069.551) (-4062.866) [-4066.439] * [-4066.392] (-4071.015) (-4070.608) (-4078.240) -- 0:13:43
117000 -- (-4076.605) (-4081.934) [-4065.705] (-4064.226) * [-4077.297] (-4072.514) (-4067.899) (-4087.433) -- 0:13:42
118000 -- (-4075.779) [-4066.225] (-4083.040) (-4062.218) * (-4070.547) (-4067.874) (-4074.060) [-4067.802] -- 0:13:42
119000 -- (-4068.162) (-4069.357) [-4060.986] (-4064.745) * (-4070.273) [-4061.446] (-4070.299) (-4073.903) -- 0:13:41
120000 -- (-4077.036) (-4068.595) (-4056.781) [-4064.920] * (-4073.220) [-4063.263] (-4070.936) (-4068.098) -- 0:13:41
Average standard deviation of split frequencies: 0.017971
121000 -- [-4063.124] (-4082.686) (-4075.986) (-4066.064) * (-4077.228) [-4071.563] (-4067.912) (-4085.568) -- 0:13:40
122000 -- (-4068.233) [-4069.499] (-4062.972) (-4068.025) * (-4073.192) [-4068.366] (-4068.356) (-4078.658) -- 0:13:40
123000 -- (-4078.965) [-4064.482] (-4062.769) (-4071.355) * (-4083.240) (-4062.075) [-4064.243] (-4078.173) -- 0:13:39
124000 -- (-4064.640) (-4065.732) [-4056.999] (-4076.262) * (-4068.195) (-4078.973) [-4063.939] (-4069.925) -- 0:13:39
125000 -- (-4067.515) [-4068.711] (-4072.807) (-4061.960) * [-4060.284] (-4068.732) (-4065.595) (-4069.404) -- 0:13:39
Average standard deviation of split frequencies: 0.018419
126000 -- [-4066.218] (-4081.081) (-4075.458) (-4079.853) * (-4069.884) [-4071.528] (-4064.920) (-4073.648) -- 0:13:31
127000 -- [-4079.453] (-4063.671) (-4078.306) (-4077.518) * [-4074.557] (-4070.697) (-4082.936) (-4076.110) -- 0:13:31
128000 -- (-4082.013) (-4072.659) (-4077.716) [-4078.331] * [-4068.093] (-4061.193) (-4068.709) (-4069.337) -- 0:13:30
129000 -- [-4073.890] (-4082.713) (-4069.611) (-4072.771) * (-4066.834) [-4069.818] (-4077.174) (-4077.292) -- 0:13:30
130000 -- (-4066.650) [-4071.406] (-4068.531) (-4075.176) * (-4077.054) (-4073.687) [-4060.897] (-4064.984) -- 0:13:29
Average standard deviation of split frequencies: 0.016451
131000 -- [-4072.463] (-4067.251) (-4073.241) (-4075.826) * (-4073.168) [-4073.944] (-4087.558) (-4077.094) -- 0:13:35
132000 -- (-4070.935) (-4072.150) [-4064.874] (-4084.026) * (-4066.596) [-4071.662] (-4078.663) (-4092.609) -- 0:13:35
133000 -- [-4063.457] (-4070.582) (-4068.572) (-4071.476) * (-4074.831) [-4063.369] (-4071.723) (-4074.968) -- 0:13:34
134000 -- (-4069.987) [-4056.471] (-4084.989) (-4077.005) * (-4068.177) (-4059.573) (-4085.983) [-4071.292] -- 0:13:27
135000 -- (-4082.837) (-4063.526) [-4069.869] (-4066.043) * (-4079.881) (-4066.978) (-4080.277) [-4069.634] -- 0:13:27
Average standard deviation of split frequencies: 0.017464
136000 -- (-4072.001) (-4075.666) [-4068.011] (-4066.750) * (-4068.119) (-4060.421) (-4068.834) [-4065.026] -- 0:13:26
137000 -- (-4064.713) (-4074.652) [-4063.713] (-4066.247) * (-4065.824) (-4072.763) (-4072.727) [-4078.665] -- 0:13:26
138000 -- [-4066.569] (-4077.488) (-4068.179) (-4078.904) * (-4076.923) (-4068.669) (-4076.585) [-4068.790] -- 0:13:25
139000 -- (-4067.111) [-4063.045] (-4069.143) (-4080.595) * [-4068.556] (-4078.059) (-4065.469) (-4071.043) -- 0:13:25
140000 -- (-4065.389) (-4077.715) [-4072.836] (-4071.179) * [-4072.644] (-4075.389) (-4065.701) (-4077.046) -- 0:13:24
Average standard deviation of split frequencies: 0.015282
141000 -- [-4071.427] (-4080.561) (-4080.005) (-4072.727) * [-4064.468] (-4066.920) (-4075.483) (-4075.288) -- 0:13:24
142000 -- (-4082.829) (-4084.483) [-4068.354] (-4060.682) * [-4065.047] (-4071.786) (-4067.264) (-4076.067) -- 0:13:23
143000 -- (-4077.568) [-4069.795] (-4066.232) (-4067.170) * (-4068.903) (-4068.133) (-4062.108) [-4063.624] -- 0:13:23
144000 -- (-4077.542) [-4073.631] (-4075.958) (-4087.930) * (-4072.276) (-4073.957) (-4069.452) [-4071.214] -- 0:13:22
145000 -- (-4072.265) [-4061.296] (-4068.287) (-4067.855) * [-4071.760] (-4066.752) (-4071.744) (-4068.792) -- 0:13:21
Average standard deviation of split frequencies: 0.015523
146000 -- (-4071.080) (-4077.286) (-4063.714) [-4067.299] * [-4071.811] (-4070.354) (-4068.576) (-4070.447) -- 0:13:21
147000 -- (-4076.236) (-4081.912) (-4060.494) [-4064.292] * (-4079.640) [-4063.263] (-4076.966) (-4063.987) -- 0:13:14
148000 -- (-4077.604) (-4088.635) (-4073.495) [-4070.789] * [-4065.370] (-4070.918) (-4068.808) (-4071.562) -- 0:13:14
149000 -- (-4068.338) (-4083.396) (-4068.504) [-4069.757] * (-4059.887) (-4072.972) (-4069.220) [-4067.904] -- 0:13:13
150000 -- (-4080.507) [-4065.191] (-4064.768) (-4076.490) * (-4073.543) (-4077.051) [-4068.837] (-4075.250) -- 0:13:13
Average standard deviation of split frequencies: 0.014643
151000 -- (-4069.367) (-4067.277) (-4065.508) [-4076.742] * (-4075.559) (-4075.183) [-4066.308] (-4095.545) -- 0:13:12
152000 -- (-4070.647) [-4071.933] (-4063.408) (-4066.177) * (-4068.669) (-4071.491) (-4067.797) [-4068.411] -- 0:13:12
153000 -- (-4069.634) (-4071.609) [-4062.569] (-4073.181) * (-4084.892) (-4072.943) (-4067.651) [-4068.058] -- 0:13:11
154000 -- (-4064.685) (-4075.762) (-4071.544) [-4077.270] * (-4062.244) [-4065.063] (-4068.737) (-4090.529) -- 0:13:11
155000 -- [-4065.978] (-4064.566) (-4064.066) (-4076.506) * [-4073.254] (-4073.318) (-4067.990) (-4084.469) -- 0:13:10
Average standard deviation of split frequencies: 0.015109
156000 -- [-4068.685] (-4074.083) (-4066.091) (-4076.637) * (-4072.643) (-4072.038) [-4066.326] (-4076.942) -- 0:13:09
157000 -- (-4071.489) (-4067.051) [-4065.560] (-4074.547) * (-4073.037) [-4076.123] (-4074.027) (-4086.789) -- 0:13:09
158000 -- (-4062.753) (-4068.334) [-4070.558] (-4074.994) * (-4066.302) (-4072.795) (-4065.543) [-4069.990] -- 0:13:08
159000 -- (-4077.340) (-4061.710) [-4076.683] (-4067.413) * [-4071.103] (-4083.734) (-4074.816) (-4068.004) -- 0:13:02
160000 -- (-4079.524) [-4062.206] (-4075.172) (-4067.281) * (-4076.898) [-4062.676] (-4070.698) (-4087.768) -- 0:13:02
Average standard deviation of split frequencies: 0.015374
161000 -- (-4086.779) [-4062.913] (-4072.380) (-4062.905) * (-4072.554) [-4075.261] (-4085.093) (-4063.800) -- 0:13:01
162000 -- (-4067.109) [-4065.080] (-4070.456) (-4072.917) * (-4072.334) (-4068.371) [-4063.949] (-4071.310) -- 0:13:01
163000 -- [-4067.730] (-4074.425) (-4067.829) (-4072.975) * (-4077.646) (-4062.350) [-4066.729] (-4073.165) -- 0:13:00
164000 -- (-4063.245) [-4066.759] (-4074.687) (-4067.248) * (-4072.830) (-4071.539) [-4063.354] (-4064.218) -- 0:12:59
165000 -- (-4068.358) (-4068.503) [-4062.756] (-4072.461) * (-4073.718) (-4082.132) [-4069.281] (-4080.717) -- 0:12:59
Average standard deviation of split frequencies: 0.016383
166000 -- (-4065.849) (-4067.198) [-4068.856] (-4075.446) * (-4082.821) (-4084.754) (-4068.659) [-4072.604] -- 0:12:58
167000 -- (-4067.009) (-4075.692) (-4073.219) [-4063.697] * (-4064.071) [-4064.423] (-4071.972) (-4076.481) -- 0:12:58
168000 -- (-4062.673) (-4086.727) (-4082.895) [-4068.800] * [-4073.060] (-4066.962) (-4082.299) (-4078.890) -- 0:12:57
169000 -- [-4062.779] (-4066.534) (-4085.808) (-4075.576) * (-4056.459) (-4087.272) (-4070.268) [-4064.467] -- 0:12:56
170000 -- (-4074.590) (-4068.671) (-4083.689) [-4072.720] * (-4070.329) (-4069.475) (-4081.297) [-4074.746] -- 0:12:51
Average standard deviation of split frequencies: 0.016042
171000 -- (-4066.345) (-4076.967) (-4071.700) [-4069.919] * [-4064.384] (-4068.783) (-4076.103) (-4072.298) -- 0:12:50
172000 -- [-4061.468] (-4071.232) (-4072.588) (-4060.724) * (-4078.500) (-4073.875) [-4059.695] (-4068.273) -- 0:12:50
173000 -- [-4068.085] (-4068.915) (-4069.800) (-4070.722) * [-4060.036] (-4074.131) (-4071.108) (-4075.524) -- 0:12:49
174000 -- (-4069.080) (-4074.992) [-4066.789] (-4063.078) * [-4075.871] (-4070.296) (-4074.482) (-4064.805) -- 0:12:49
175000 -- (-4075.644) [-4077.844] (-4068.985) (-4070.782) * [-4062.853] (-4064.304) (-4079.091) (-4081.846) -- 0:12:48
Average standard deviation of split frequencies: 0.015556
176000 -- (-4059.263) (-4068.643) (-4077.417) [-4076.649] * (-4067.300) (-4072.384) (-4066.951) [-4070.753] -- 0:12:47
177000 -- (-4064.970) [-4062.012] (-4066.495) (-4077.861) * (-4073.431) (-4079.529) [-4065.031] (-4076.287) -- 0:12:47
178000 -- (-4071.004) (-4059.966) (-4070.752) [-4075.380] * (-4073.223) (-4061.164) (-4068.721) [-4077.213] -- 0:12:46
179000 -- (-4060.352) (-4073.940) [-4072.682] (-4082.224) * [-4059.192] (-4079.112) (-4074.091) (-4078.177) -- 0:12:45
180000 -- [-4067.667] (-4077.514) (-4078.647) (-4085.451) * [-4065.858] (-4075.948) (-4073.311) (-4071.223) -- 0:12:45
Average standard deviation of split frequencies: 0.014953
181000 -- (-4069.837) [-4066.873] (-4068.013) (-4079.352) * (-4066.693) (-4081.321) [-4062.403] (-4064.789) -- 0:12:40
182000 -- (-4074.194) (-4065.757) [-4065.302] (-4074.765) * [-4067.380] (-4073.004) (-4071.357) (-4067.998) -- 0:12:39
183000 -- (-4067.393) [-4065.677] (-4077.029) (-4072.000) * (-4080.151) (-4077.754) [-4063.803] (-4077.924) -- 0:12:38
184000 -- [-4066.850] (-4076.391) (-4085.213) (-4083.160) * (-4068.946) (-4091.500) [-4063.820] (-4073.330) -- 0:12:38
185000 -- (-4069.630) (-4074.111) (-4077.056) [-4065.738] * [-4067.870] (-4080.781) (-4072.419) (-4075.863) -- 0:12:37
Average standard deviation of split frequencies: 0.015791
186000 -- (-4069.790) [-4068.105] (-4085.357) (-4067.366) * [-4066.273] (-4082.779) (-4080.317) (-4076.434) -- 0:12:37
187000 -- (-4083.672) (-4063.438) [-4061.130] (-4075.854) * [-4073.861] (-4088.198) (-4071.156) (-4069.491) -- 0:12:36
188000 -- (-4064.971) (-4080.807) (-4071.395) [-4074.006] * (-4074.419) [-4071.867] (-4070.280) (-4076.223) -- 0:12:35
189000 -- (-4075.706) [-4080.110] (-4073.922) (-4071.450) * (-4081.751) (-4085.092) (-4071.630) [-4076.405] -- 0:12:35
190000 -- (-4073.638) (-4066.840) [-4056.751] (-4082.247) * [-4063.731] (-4085.170) (-4070.256) (-4066.020) -- 0:12:34
Average standard deviation of split frequencies: 0.014736
191000 -- (-4073.002) (-4071.055) [-4064.433] (-4073.009) * (-4077.520) (-4069.466) (-4066.482) [-4062.359] -- 0:12:29
192000 -- (-4068.553) [-4061.700] (-4072.044) (-4066.767) * [-4070.000] (-4093.523) (-4071.184) (-4072.703) -- 0:12:29
193000 -- (-4086.407) (-4066.608) [-4067.196] (-4079.296) * (-4063.476) (-4069.358) (-4077.479) [-4064.232] -- 0:12:28
194000 -- [-4072.895] (-4071.397) (-4074.951) (-4070.757) * (-4075.099) [-4064.225] (-4073.468) (-4072.796) -- 0:12:27
195000 -- (-4069.248) [-4073.195] (-4060.486) (-4073.533) * (-4082.913) [-4069.603] (-4069.122) (-4071.394) -- 0:12:27
Average standard deviation of split frequencies: 0.015297
196000 -- [-4063.212] (-4065.639) (-4066.171) (-4083.047) * (-4070.213) (-4069.132) [-4068.374] (-4073.121) -- 0:12:26
197000 -- (-4067.871) [-4081.677] (-4078.728) (-4077.452) * (-4065.046) (-4066.311) (-4078.960) [-4067.746] -- 0:12:25
198000 -- (-4087.011) (-4073.426) [-4071.705] (-4075.882) * (-4070.181) (-4078.301) (-4071.045) [-4062.808] -- 0:12:25
199000 -- [-4070.097] (-4072.379) (-4075.087) (-4078.208) * (-4069.778) (-4069.301) [-4063.265] (-4064.697) -- 0:12:24
200000 -- (-4083.218) (-4073.939) (-4077.604) [-4062.593] * (-4075.876) (-4067.111) (-4060.440) [-4067.682] -- 0:12:24
Average standard deviation of split frequencies: 0.018251
201000 -- (-4076.329) [-4064.040] (-4070.645) (-4069.113) * [-4059.683] (-4079.714) (-4067.750) (-4067.950) -- 0:12:23
202000 -- (-4065.229) (-4071.359) [-4060.078] (-4073.684) * [-4061.286] (-4070.541) (-4070.180) (-4070.765) -- 0:12:22
203000 -- (-4066.249) (-4076.290) [-4075.362] (-4071.146) * [-4068.016] (-4074.242) (-4072.270) (-4077.906) -- 0:12:22
204000 -- (-4069.539) [-4064.935] (-4069.983) (-4077.081) * (-4075.319) [-4071.550] (-4067.963) (-4070.743) -- 0:12:17
205000 -- (-4079.356) (-4074.663) (-4073.462) [-4074.389] * (-4085.281) (-4073.151) [-4068.063] (-4074.086) -- 0:12:16
Average standard deviation of split frequencies: 0.017209
206000 -- (-4069.677) (-4079.499) (-4074.866) [-4060.902] * (-4077.977) [-4071.264] (-4070.490) (-4071.673) -- 0:12:16
207000 -- [-4074.571] (-4072.110) (-4073.050) (-4069.407) * (-4063.185) (-4064.782) [-4065.097] (-4083.149) -- 0:12:15
208000 -- [-4070.683] (-4081.450) (-4081.076) (-4068.880) * [-4069.019] (-4079.894) (-4072.347) (-4070.923) -- 0:12:14
209000 -- (-4099.071) [-4068.404] (-4077.137) (-4060.501) * (-4083.820) (-4064.419) (-4067.650) [-4066.648] -- 0:12:14
210000 -- (-4079.327) [-4068.256] (-4070.626) (-4070.632) * (-4074.813) (-4085.941) [-4064.019] (-4073.314) -- 0:12:13
Average standard deviation of split frequencies: 0.015850
211000 -- (-4080.108) [-4066.209] (-4069.817) (-4062.949) * [-4058.678] (-4068.178) (-4066.845) (-4069.943) -- 0:12:12
212000 -- (-4074.653) (-4078.388) [-4064.247] (-4063.014) * (-4073.148) (-4078.002) (-4078.776) [-4065.038] -- 0:12:12
213000 -- (-4069.828) (-4076.931) (-4070.521) [-4066.552] * (-4077.966) [-4069.621] (-4067.133) (-4067.624) -- 0:12:11
214000 -- (-4073.699) [-4066.011] (-4073.666) (-4079.113) * (-4064.699) [-4079.471] (-4075.319) (-4067.953) -- 0:12:10
215000 -- [-4065.391] (-4057.475) (-4074.828) (-4073.557) * [-4068.299] (-4066.917) (-4065.685) (-4071.627) -- 0:12:10
Average standard deviation of split frequencies: 0.015277
216000 -- [-4066.532] (-4067.466) (-4069.735) (-4068.760) * (-4065.458) [-4072.878] (-4064.019) (-4071.466) -- 0:12:09
217000 -- (-4079.953) (-4074.617) (-4069.023) [-4069.683] * (-4067.961) (-4078.057) (-4066.466) [-4064.104] -- 0:12:08
218000 -- [-4074.116] (-4080.605) (-4061.079) (-4079.245) * [-4067.262] (-4072.284) (-4072.057) (-4087.751) -- 0:12:08
219000 -- (-4074.963) (-4067.010) [-4064.516] (-4084.427) * (-4073.706) (-4074.678) [-4063.753] (-4074.206) -- 0:12:07
220000 -- (-4078.479) (-4077.766) [-4066.269] (-4071.160) * (-4068.528) (-4064.790) [-4063.664] (-4078.748) -- 0:12:06
Average standard deviation of split frequencies: 0.015894
221000 -- [-4073.758] (-4076.138) (-4076.585) (-4066.473) * [-4060.116] (-4081.137) (-4070.131) (-4063.315) -- 0:12:06
222000 -- [-4068.551] (-4061.480) (-4085.749) (-4063.073) * (-4067.256) (-4072.329) [-4063.934] (-4066.606) -- 0:12:05
223000 -- (-4067.103) (-4074.157) (-4086.675) [-4065.398] * (-4065.643) (-4077.590) (-4082.620) [-4060.052] -- 0:12:04
224000 -- (-4064.647) [-4069.014] (-4073.541) (-4074.547) * [-4082.386] (-4066.138) (-4084.563) (-4080.255) -- 0:12:00
225000 -- (-4064.763) (-4086.678) [-4065.997] (-4069.704) * (-4084.736) [-4060.568] (-4069.872) (-4069.124) -- 0:11:59
Average standard deviation of split frequencies: 0.015602
226000 -- [-4069.711] (-4096.446) (-4064.547) (-4061.901) * (-4069.950) [-4063.183] (-4081.180) (-4062.035) -- 0:11:59
227000 -- (-4082.967) (-4061.631) [-4064.799] (-4067.787) * (-4072.958) [-4066.938] (-4073.489) (-4066.070) -- 0:11:58
228000 -- (-4080.183) (-4068.159) (-4078.514) [-4065.939] * (-4080.654) (-4063.530) (-4061.890) [-4064.814] -- 0:11:57
229000 -- (-4073.150) (-4065.967) (-4063.853) [-4069.166] * (-4081.539) (-4064.877) (-4084.762) [-4078.011] -- 0:11:57
230000 -- (-4066.235) [-4071.167] (-4077.259) (-4069.682) * (-4073.397) [-4064.860] (-4072.012) (-4083.499) -- 0:11:56
Average standard deviation of split frequencies: 0.016009
231000 -- (-4069.710) (-4076.012) (-4065.649) [-4077.945] * (-4069.197) (-4081.756) [-4066.215] (-4081.880) -- 0:11:55
232000 -- (-4073.644) (-4079.714) (-4063.412) [-4070.858] * (-4079.098) (-4069.170) [-4074.715] (-4076.430) -- 0:11:55
233000 -- (-4071.653) (-4068.638) [-4069.068] (-4074.185) * [-4067.603] (-4066.737) (-4076.228) (-4081.324) -- 0:11:54
234000 -- (-4075.026) (-4064.503) (-4063.963) [-4067.868] * (-4065.057) [-4066.238] (-4081.935) (-4082.860) -- 0:11:53
235000 -- (-4083.581) (-4068.592) [-4069.523] (-4069.730) * [-4057.773] (-4072.256) (-4066.177) (-4063.988) -- 0:11:52
Average standard deviation of split frequencies: 0.015231
236000 -- (-4092.274) (-4068.714) (-4069.926) [-4066.352] * (-4065.757) (-4079.115) [-4061.842] (-4080.185) -- 0:11:48
237000 -- (-4078.302) (-4067.259) (-4070.755) [-4076.697] * (-4069.085) (-4080.407) [-4065.595] (-4074.820) -- 0:11:48
238000 -- (-4080.288) (-4075.102) (-4071.194) [-4069.185] * [-4064.939] (-4092.580) (-4074.372) (-4074.096) -- 0:11:47
239000 -- (-4070.796) [-4062.650] (-4066.554) (-4072.408) * [-4064.862] (-4079.679) (-4090.167) (-4070.636) -- 0:11:46
240000 -- [-4061.353] (-4067.758) (-4069.731) (-4065.462) * (-4073.477) (-4069.702) (-4083.055) [-4068.382] -- 0:11:46
Average standard deviation of split frequencies: 0.017302
241000 -- (-4069.242) [-4061.245] (-4085.139) (-4071.719) * (-4073.782) (-4067.944) (-4073.178) [-4070.948] -- 0:11:45
242000 -- [-4071.750] (-4073.632) (-4073.593) (-4063.364) * (-4069.074) (-4067.911) (-4081.237) [-4058.518] -- 0:11:44
243000 -- (-4072.745) (-4066.992) [-4064.116] (-4068.974) * (-4072.344) (-4061.287) [-4063.579] (-4072.955) -- 0:11:44
244000 -- [-4064.806] (-4076.708) (-4079.700) (-4068.126) * (-4082.252) (-4069.035) [-4061.032] (-4069.000) -- 0:11:43
245000 -- [-4064.946] (-4073.583) (-4081.712) (-4073.705) * (-4079.773) (-4066.764) (-4072.374) [-4068.739] -- 0:11:42
Average standard deviation of split frequencies: 0.017486
246000 -- (-4069.002) (-4085.355) (-4075.190) [-4069.301] * (-4075.081) (-4063.279) [-4065.509] (-4074.760) -- 0:11:41
247000 -- (-4063.425) (-4078.998) (-4088.718) [-4066.438] * [-4061.885] (-4065.768) (-4088.301) (-4074.780) -- 0:11:41
248000 -- (-4064.212) [-4067.382] (-4076.420) (-4064.307) * [-4068.454] (-4073.033) (-4068.904) (-4072.828) -- 0:11:37
249000 -- (-4076.410) (-4072.982) [-4066.812] (-4082.698) * (-4082.491) (-4065.774) (-4062.728) [-4057.320] -- 0:11:36
250000 -- [-4072.295] (-4071.859) (-4074.920) (-4075.214) * (-4082.399) (-4081.142) [-4057.913] (-4067.785) -- 0:11:36
Average standard deviation of split frequencies: 0.018649
251000 -- (-4069.013) [-4081.656] (-4063.474) (-4088.541) * (-4071.458) (-4077.022) (-4064.603) [-4068.844] -- 0:11:35
252000 -- (-4071.811) (-4078.103) [-4070.144] (-4076.808) * [-4064.752] (-4077.629) (-4066.657) (-4078.692) -- 0:11:34
253000 -- [-4068.074] (-4073.074) (-4074.191) (-4083.284) * (-4075.847) (-4070.674) (-4072.314) [-4069.849] -- 0:11:33
254000 -- [-4065.876] (-4067.647) (-4067.626) (-4069.310) * (-4066.716) [-4070.605] (-4072.053) (-4073.407) -- 0:11:33
255000 -- [-4065.724] (-4067.204) (-4071.229) (-4072.351) * (-4059.452) (-4072.646) [-4065.135] (-4075.076) -- 0:11:32
Average standard deviation of split frequencies: 0.018875
256000 -- (-4086.412) [-4075.520] (-4071.824) (-4064.905) * [-4076.431] (-4080.743) (-4074.133) (-4071.779) -- 0:11:31
257000 -- (-4062.776) (-4083.384) [-4061.312] (-4072.247) * [-4065.953] (-4082.988) (-4072.147) (-4067.016) -- 0:11:30
258000 -- [-4076.545] (-4092.288) (-4083.165) (-4072.883) * (-4087.080) (-4066.275) (-4072.290) [-4060.610] -- 0:11:30
259000 -- (-4070.835) [-4066.436] (-4075.646) (-4069.447) * (-4092.114) [-4077.660] (-4073.274) (-4063.783) -- 0:11:29
260000 -- (-4084.156) [-4074.856] (-4068.094) (-4060.508) * [-4062.721] (-4077.767) (-4090.860) (-4067.737) -- 0:11:28
Average standard deviation of split frequencies: 0.018763
261000 -- (-4081.369) (-4071.834) [-4066.282] (-4070.615) * (-4089.826) [-4070.389] (-4083.917) (-4071.897) -- 0:11:28
262000 -- (-4066.903) [-4063.975] (-4066.416) (-4073.093) * [-4075.425] (-4080.142) (-4081.644) (-4064.525) -- 0:11:27
263000 -- [-4070.402] (-4071.717) (-4063.884) (-4083.914) * [-4062.642] (-4068.417) (-4075.635) (-4071.698) -- 0:11:23
264000 -- [-4067.322] (-4078.843) (-4069.692) (-4063.865) * (-4071.523) (-4078.666) (-4073.944) [-4067.054] -- 0:11:23
265000 -- (-4081.930) (-4081.311) [-4062.045] (-4068.537) * [-4064.817] (-4067.492) (-4077.367) (-4089.067) -- 0:11:22
Average standard deviation of split frequencies: 0.018714
266000 -- (-4087.553) (-4069.702) (-4065.046) [-4069.794] * (-4074.400) [-4079.169] (-4069.431) (-4075.949) -- 0:11:21
267000 -- (-4076.391) (-4073.873) (-4071.201) [-4062.524] * [-4064.767] (-4074.478) (-4066.706) (-4084.705) -- 0:11:20
268000 -- (-4081.376) (-4074.586) (-4080.340) [-4066.247] * (-4083.345) (-4084.123) (-4063.465) [-4068.788] -- 0:11:20
269000 -- (-4093.141) (-4078.902) [-4080.842] (-4063.129) * (-4061.400) (-4076.647) [-4058.265] (-4074.531) -- 0:11:19
270000 -- [-4076.770] (-4073.184) (-4069.905) (-4076.236) * (-4071.369) (-4071.728) (-4065.878) [-4063.596] -- 0:11:18
Average standard deviation of split frequencies: 0.019158
271000 -- (-4085.619) (-4085.358) (-4070.027) [-4066.957] * (-4075.553) [-4064.172] (-4079.089) (-4069.954) -- 0:11:17
272000 -- (-4084.411) (-4076.984) [-4066.246] (-4074.969) * (-4078.035) [-4066.805] (-4075.128) (-4065.173) -- 0:11:17
273000 -- (-4065.583) (-4082.007) (-4061.829) [-4071.747] * (-4063.487) [-4062.904] (-4067.788) (-4075.841) -- 0:11:16
274000 -- (-4078.669) (-4079.033) (-4072.354) [-4071.236] * [-4073.007] (-4075.895) (-4084.049) (-4087.892) -- 0:11:15
275000 -- (-4077.186) [-4065.037] (-4067.977) (-4072.354) * [-4073.903] (-4075.874) (-4075.457) (-4066.518) -- 0:11:14
Average standard deviation of split frequencies: 0.019676
276000 -- (-4067.404) (-4062.963) (-4091.571) [-4070.367] * [-4067.857] (-4086.442) (-4075.254) (-4070.436) -- 0:11:14
277000 -- [-4079.435] (-4064.781) (-4066.727) (-4082.203) * (-4067.232) [-4065.017] (-4072.981) (-4075.256) -- 0:11:13
278000 -- (-4081.652) (-4062.969) [-4066.378] (-4081.111) * [-4059.115] (-4066.909) (-4072.372) (-4076.992) -- 0:11:12
279000 -- (-4079.637) (-4066.884) [-4076.443] (-4080.385) * (-4064.554) (-4079.486) [-4068.402] (-4069.339) -- 0:11:11
280000 -- (-4068.659) (-4072.571) [-4067.153] (-4071.563) * [-4059.182] (-4077.009) (-4062.320) (-4084.541) -- 0:11:08
Average standard deviation of split frequencies: 0.021432
281000 -- (-4080.545) (-4075.245) (-4076.136) [-4063.822] * (-4079.821) (-4068.094) (-4078.347) [-4069.635] -- 0:11:07
282000 -- (-4081.291) (-4065.512) [-4065.243] (-4077.037) * [-4058.392] (-4074.767) (-4074.617) (-4066.571) -- 0:11:07
283000 -- [-4062.432] (-4073.844) (-4069.097) (-4078.150) * (-4082.584) (-4068.168) [-4060.042] (-4068.559) -- 0:11:06
284000 -- [-4065.544] (-4070.480) (-4069.591) (-4073.573) * (-4071.096) [-4067.796] (-4085.388) (-4074.833) -- 0:11:05
285000 -- [-4065.185] (-4084.953) (-4081.403) (-4067.702) * (-4069.507) (-4067.375) (-4069.313) [-4068.619] -- 0:11:04
Average standard deviation of split frequencies: 0.021230
286000 -- (-4064.464) [-4072.166] (-4083.500) (-4076.020) * [-4068.461] (-4070.093) (-4066.612) (-4066.190) -- 0:11:04
287000 -- [-4061.781] (-4072.814) (-4070.370) (-4061.381) * (-4073.653) (-4067.224) (-4080.742) [-4076.807] -- 0:11:03
288000 -- (-4072.892) (-4070.426) [-4066.096] (-4076.552) * (-4069.280) (-4078.593) [-4068.259] (-4065.629) -- 0:11:02
289000 -- (-4067.153) [-4075.536] (-4072.841) (-4068.997) * (-4069.028) (-4065.259) (-4066.088) [-4060.845] -- 0:11:01
290000 -- (-4071.453) (-4070.160) (-4078.126) [-4061.758] * (-4073.368) (-4103.141) [-4062.238] (-4065.465) -- 0:11:01
Average standard deviation of split frequencies: 0.020889
291000 -- (-4069.491) (-4083.173) [-4068.926] (-4067.324) * (-4060.143) (-4085.864) (-4069.398) [-4067.585] -- 0:11:00
292000 -- [-4064.850] (-4069.465) (-4074.415) (-4069.786) * (-4069.050) (-4069.000) (-4074.167) [-4065.327] -- 0:10:59
293000 -- (-4061.344) [-4071.141] (-4072.043) (-4078.804) * [-4061.930] (-4075.635) (-4066.345) (-4077.794) -- 0:10:58
294000 -- (-4076.269) (-4068.391) (-4068.940) [-4059.133] * [-4069.877] (-4093.609) (-4071.594) (-4074.002) -- 0:10:57
295000 -- (-4072.031) (-4078.037) (-4069.094) [-4065.786] * (-4067.559) [-4060.534] (-4075.409) (-4075.184) -- 0:10:57
Average standard deviation of split frequencies: 0.019621
296000 -- (-4074.116) (-4068.193) (-4073.936) [-4071.621] * (-4068.114) [-4066.440] (-4077.892) (-4069.649) -- 0:10:56
297000 -- (-4068.316) (-4070.923) (-4075.249) [-4072.453] * (-4078.347) [-4061.341] (-4075.223) (-4073.436) -- 0:10:55
298000 -- (-4076.290) (-4080.404) [-4062.996] (-4068.469) * (-4074.318) (-4065.160) (-4067.424) [-4070.626] -- 0:10:54
299000 -- [-4069.039] (-4070.054) (-4072.719) (-4070.580) * [-4067.423] (-4073.741) (-4084.540) (-4063.667) -- 0:10:54
300000 -- (-4070.153) (-4065.694) [-4065.211] (-4079.397) * (-4077.876) (-4066.893) (-4084.528) [-4061.486] -- 0:10:53
Average standard deviation of split frequencies: 0.020069
301000 -- [-4073.537] (-4070.279) (-4061.348) (-4074.170) * (-4073.828) (-4075.450) (-4074.298) [-4078.766] -- 0:10:52
302000 -- (-4075.152) (-4084.293) [-4067.181] (-4069.871) * (-4065.555) (-4070.635) [-4076.295] (-4079.329) -- 0:10:51
303000 -- (-4068.380) [-4072.773] (-4072.737) (-4074.725) * (-4067.531) [-4066.314] (-4071.562) (-4084.561) -- 0:10:50
304000 -- [-4069.618] (-4073.936) (-4068.386) (-4080.516) * (-4074.668) (-4087.145) (-4077.243) [-4070.746] -- 0:10:50
305000 -- (-4082.000) (-4076.728) [-4078.096] (-4067.755) * (-4081.783) (-4074.389) [-4061.504] (-4072.211) -- 0:10:49
Average standard deviation of split frequencies: 0.018117
306000 -- [-4066.620] (-4083.835) (-4090.359) (-4064.991) * (-4064.718) (-4056.514) (-4082.910) [-4069.464] -- 0:10:48
307000 -- [-4064.852] (-4072.346) (-4076.859) (-4073.837) * (-4080.790) [-4070.902] (-4062.557) (-4077.194) -- 0:10:45
308000 -- (-4072.076) (-4070.576) (-4070.077) [-4067.149] * (-4085.471) (-4077.788) (-4077.026) [-4069.960] -- 0:10:44
309000 -- (-4070.334) [-4068.924] (-4071.907) (-4075.746) * [-4072.009] (-4071.212) (-4074.237) (-4062.562) -- 0:10:44
310000 -- (-4072.527) (-4082.062) (-4079.168) [-4065.257] * (-4063.474) (-4085.099) (-4078.355) [-4069.169] -- 0:10:43
Average standard deviation of split frequencies: 0.017238
311000 -- [-4071.129] (-4072.579) (-4074.222) (-4064.364) * (-4062.713) [-4057.048] (-4080.777) (-4077.323) -- 0:10:42
312000 -- [-4073.118] (-4077.163) (-4064.750) (-4062.635) * (-4062.960) (-4077.479) (-4067.570) [-4066.433] -- 0:10:41
313000 -- (-4066.178) [-4074.705] (-4067.100) (-4078.771) * (-4064.876) [-4067.418] (-4073.335) (-4071.543) -- 0:10:40
314000 -- (-4067.971) (-4072.267) [-4066.199] (-4070.240) * (-4070.831) (-4083.750) (-4071.344) [-4073.263] -- 0:10:40
315000 -- (-4066.226) [-4063.474] (-4067.525) (-4072.863) * (-4076.682) [-4065.007] (-4076.996) (-4075.824) -- 0:10:39
Average standard deviation of split frequencies: 0.015753
316000 -- [-4064.215] (-4067.399) (-4074.116) (-4067.537) * [-4072.996] (-4068.239) (-4069.060) (-4081.700) -- 0:10:38
317000 -- [-4070.652] (-4066.227) (-4067.556) (-4074.366) * (-4083.749) (-4075.147) [-4066.188] (-4072.832) -- 0:10:35
318000 -- (-4068.825) [-4079.857] (-4069.698) (-4086.930) * [-4067.275] (-4068.595) (-4073.003) (-4071.567) -- 0:10:34
319000 -- (-4089.503) (-4080.580) [-4070.195] (-4068.942) * (-4076.849) (-4080.613) [-4063.172] (-4082.372) -- 0:10:34
320000 -- (-4070.054) (-4088.824) [-4069.490] (-4070.093) * (-4071.744) (-4079.626) (-4075.893) [-4071.571] -- 0:10:33
Average standard deviation of split frequencies: 0.016355
321000 -- (-4064.666) (-4074.310) [-4058.390] (-4073.848) * (-4082.166) (-4076.011) [-4070.452] (-4068.310) -- 0:10:32
322000 -- (-4089.514) (-4077.243) [-4076.669] (-4073.777) * (-4064.899) (-4085.259) [-4070.676] (-4075.248) -- 0:10:31
323000 -- (-4083.971) (-4059.624) [-4059.165] (-4085.258) * (-4083.604) [-4067.358] (-4069.338) (-4075.595) -- 0:10:30
324000 -- (-4073.554) (-4071.715) [-4064.708] (-4083.476) * (-4073.591) (-4073.704) [-4066.728] (-4061.266) -- 0:10:30
325000 -- (-4072.499) (-4072.786) [-4067.945] (-4078.343) * (-4067.695) [-4069.726] (-4078.290) (-4079.827) -- 0:10:29
Average standard deviation of split frequencies: 0.016658
326000 -- (-4077.274) [-4070.485] (-4070.461) (-4070.463) * (-4061.007) [-4074.374] (-4076.017) (-4079.362) -- 0:10:28
327000 -- (-4085.950) [-4071.380] (-4065.719) (-4079.150) * [-4066.439] (-4070.628) (-4073.293) (-4080.680) -- 0:10:25
328000 -- (-4076.373) [-4068.560] (-4068.776) (-4071.956) * [-4067.153] (-4076.528) (-4068.909) (-4075.796) -- 0:10:24
329000 -- (-4070.713) (-4070.633) (-4074.268) [-4059.531] * (-4068.997) (-4071.771) (-4066.915) [-4076.818] -- 0:10:24
330000 -- (-4071.447) (-4070.151) (-4076.155) [-4070.421] * (-4072.256) (-4068.782) (-4072.918) [-4064.080] -- 0:10:23
Average standard deviation of split frequencies: 0.018305
331000 -- (-4071.677) (-4068.038) [-4073.671] (-4064.215) * [-4061.172] (-4056.865) (-4068.721) (-4068.309) -- 0:10:22
332000 -- (-4060.799) (-4074.196) (-4073.914) [-4070.446] * (-4077.271) [-4068.151] (-4091.885) (-4070.934) -- 0:10:21
333000 -- [-4056.130] (-4086.577) (-4079.084) (-4064.037) * (-4068.679) (-4089.272) [-4067.711] (-4064.262) -- 0:10:20
334000 -- (-4062.792) (-4066.782) [-4073.393] (-4068.324) * [-4064.879] (-4074.235) (-4079.738) (-4065.255) -- 0:10:20
335000 -- [-4069.938] (-4070.759) (-4083.544) (-4071.505) * (-4073.387) [-4064.675] (-4066.438) (-4061.190) -- 0:10:19
Average standard deviation of split frequencies: 0.017453
336000 -- [-4072.607] (-4074.584) (-4068.803) (-4072.442) * [-4068.601] (-4068.719) (-4065.445) (-4071.937) -- 0:10:18
337000 -- [-4064.277] (-4086.184) (-4069.486) (-4063.447) * (-4073.089) [-4062.207] (-4071.931) (-4078.069) -- 0:10:17
338000 -- [-4077.313] (-4071.325) (-4071.416) (-4071.146) * (-4077.474) (-4071.341) [-4066.143] (-4080.429) -- 0:10:16
339000 -- (-4078.290) [-4077.519] (-4073.458) (-4070.699) * (-4074.050) [-4064.836] (-4070.980) (-4079.425) -- 0:10:14
340000 -- (-4074.754) (-4085.451) (-4065.271) [-4070.761] * (-4079.314) [-4071.465] (-4072.754) (-4081.261) -- 0:10:13
Average standard deviation of split frequencies: 0.017934
341000 -- (-4084.111) (-4071.999) (-4064.422) [-4068.948] * (-4087.204) [-4068.696] (-4076.579) (-4075.004) -- 0:10:12
342000 -- (-4079.117) (-4072.861) [-4063.902] (-4071.308) * (-4072.638) (-4076.839) (-4077.740) [-4066.965] -- 0:10:11
343000 -- (-4067.413) (-4074.070) [-4063.944] (-4078.095) * (-4071.905) [-4063.856] (-4073.678) (-4068.910) -- 0:10:11
344000 -- [-4064.494] (-4068.689) (-4057.574) (-4066.887) * (-4082.842) (-4063.651) [-4068.040] (-4069.972) -- 0:10:10
345000 -- [-4066.399] (-4066.018) (-4070.471) (-4072.948) * (-4067.956) (-4082.365) (-4081.441) [-4057.923] -- 0:10:09
Average standard deviation of split frequencies: 0.016622
346000 -- [-4062.035] (-4078.175) (-4080.205) (-4069.011) * [-4066.096] (-4065.327) (-4061.213) (-4071.306) -- 0:10:08
347000 -- (-4074.263) [-4070.781] (-4076.288) (-4072.884) * (-4069.387) (-4075.467) (-4067.980) [-4075.980] -- 0:10:07
348000 -- (-4070.688) (-4080.430) (-4068.840) [-4064.903] * (-4069.437) (-4065.966) [-4071.525] (-4063.824) -- 0:10:07
349000 -- [-4066.772] (-4066.107) (-4066.598) (-4070.948) * (-4073.316) [-4064.957] (-4076.858) (-4066.478) -- 0:10:06
350000 -- (-4077.421) [-4066.736] (-4092.494) (-4069.261) * [-4061.940] (-4067.933) (-4071.050) (-4078.363) -- 0:10:05
Average standard deviation of split frequencies: 0.015852
351000 -- (-4071.762) (-4073.515) (-4076.370) [-4061.023] * (-4068.561) [-4067.640] (-4067.168) (-4075.816) -- 0:10:04
352000 -- (-4066.893) (-4076.654) [-4063.459] (-4074.907) * [-4070.510] (-4077.395) (-4062.132) (-4077.283) -- 0:10:01
353000 -- (-4072.888) (-4070.752) (-4069.355) [-4065.566] * (-4081.669) [-4062.283] (-4070.191) (-4072.953) -- 0:10:01
354000 -- (-4076.913) (-4077.515) [-4071.969] (-4077.711) * (-4066.976) (-4062.434) (-4082.270) [-4062.070] -- 0:10:00
355000 -- (-4076.253) [-4061.281] (-4074.615) (-4068.694) * [-4071.395] (-4078.597) (-4083.327) (-4060.383) -- 0:09:59
Average standard deviation of split frequencies: 0.016387
356000 -- (-4061.045) [-4068.011] (-4070.713) (-4080.327) * [-4067.159] (-4072.308) (-4073.540) (-4068.032) -- 0:09:58
357000 -- [-4070.463] (-4069.659) (-4091.039) (-4077.397) * (-4072.640) (-4059.499) (-4081.185) [-4058.732] -- 0:09:57
358000 -- [-4064.107] (-4061.075) (-4077.523) (-4069.084) * [-4062.772] (-4070.424) (-4079.789) (-4073.094) -- 0:09:57
359000 -- (-4078.612) (-4060.242) (-4073.316) [-4066.301] * (-4065.797) (-4069.317) [-4070.642] (-4089.640) -- 0:09:56
360000 -- [-4067.714] (-4082.491) (-4061.816) (-4080.712) * (-4075.220) [-4067.211] (-4063.275) (-4067.947) -- 0:09:55
Average standard deviation of split frequencies: 0.016120
361000 -- (-4071.203) (-4074.919) [-4063.310] (-4065.675) * (-4071.920) (-4065.706) [-4062.496] (-4077.501) -- 0:09:54
362000 -- (-4066.499) (-4069.729) [-4067.900] (-4082.807) * (-4070.016) (-4078.000) (-4074.500) [-4071.726] -- 0:09:53
363000 -- (-4081.473) (-4064.620) [-4060.821] (-4067.567) * (-4065.434) (-4082.367) [-4073.226] (-4078.830) -- 0:09:53
364000 -- (-4068.972) (-4073.161) (-4069.160) [-4069.717] * (-4069.981) (-4073.572) [-4068.493] (-4072.320) -- 0:09:52
365000 -- (-4074.860) (-4078.194) (-4072.319) [-4063.386] * (-4074.317) (-4080.252) [-4071.663] (-4070.690) -- 0:09:51
Average standard deviation of split frequencies: 0.016422
366000 -- (-4074.156) [-4064.111] (-4080.291) (-4066.264) * (-4081.520) (-4061.511) (-4071.805) [-4066.240] -- 0:09:50
367000 -- (-4066.762) (-4064.773) [-4066.109] (-4084.238) * (-4077.828) (-4066.651) [-4074.698] (-4086.076) -- 0:09:49
368000 -- (-4068.506) (-4071.094) (-4065.105) [-4075.155] * (-4072.035) (-4066.667) [-4076.194] (-4082.631) -- 0:09:49
369000 -- [-4075.492] (-4086.581) (-4070.093) (-4068.083) * (-4076.026) (-4066.245) [-4066.670] (-4080.178) -- 0:09:48
370000 -- (-4072.459) (-4096.691) (-4069.202) [-4063.646] * (-4071.252) [-4064.172] (-4057.296) (-4067.793) -- 0:09:47
Average standard deviation of split frequencies: 0.015632
371000 -- (-4077.133) (-4068.969) [-4074.046] (-4070.935) * [-4069.035] (-4075.459) (-4075.429) (-4077.967) -- 0:09:46
372000 -- (-4080.355) (-4070.921) (-4079.945) [-4071.357] * [-4069.040] (-4065.903) (-4081.667) (-4075.219) -- 0:09:44
373000 -- [-4071.242] (-4071.184) (-4075.147) (-4071.547) * [-4078.440] (-4080.025) (-4077.681) (-4084.341) -- 0:09:43
374000 -- (-4079.937) (-4071.703) [-4064.910] (-4059.857) * (-4073.330) (-4070.750) [-4066.039] (-4080.474) -- 0:09:42
375000 -- (-4072.065) [-4065.841] (-4064.212) (-4080.158) * (-4060.657) [-4068.381] (-4070.682) (-4064.304) -- 0:09:41
Average standard deviation of split frequencies: 0.015410
376000 -- (-4069.755) (-4080.307) (-4074.109) [-4067.271] * [-4062.217] (-4063.760) (-4073.534) (-4072.089) -- 0:09:40
377000 -- (-4070.328) (-4073.864) [-4076.906] (-4075.941) * (-4067.565) (-4085.382) [-4068.553] (-4067.509) -- 0:09:40
378000 -- (-4072.039) (-4080.087) [-4068.068] (-4076.423) * (-4078.992) (-4070.375) (-4067.481) [-4060.529] -- 0:09:39
379000 -- [-4061.932] (-4078.604) (-4074.440) (-4085.825) * (-4086.937) (-4071.163) [-4067.668] (-4060.241) -- 0:09:38
380000 -- [-4066.089] (-4077.043) (-4078.113) (-4073.727) * [-4072.989] (-4075.473) (-4085.693) (-4082.009) -- 0:09:37
Average standard deviation of split frequencies: 0.015634
381000 -- (-4065.940) [-4068.910] (-4080.506) (-4071.999) * (-4071.047) (-4082.329) [-4063.189] (-4064.162) -- 0:09:36
382000 -- (-4061.971) (-4077.953) [-4068.274] (-4073.931) * (-4075.376) (-4068.039) (-4082.352) [-4070.444] -- 0:09:35
383000 -- (-4064.324) (-4076.917) [-4063.334] (-4068.258) * (-4076.113) (-4071.938) (-4074.279) [-4064.397] -- 0:09:35
384000 -- (-4073.967) (-4079.283) [-4073.962] (-4077.551) * [-4067.005] (-4071.362) (-4073.429) (-4067.887) -- 0:09:34
385000 -- [-4066.285] (-4071.061) (-4083.888) (-4069.038) * [-4067.736] (-4074.362) (-4076.846) (-4072.386) -- 0:09:33
Average standard deviation of split frequencies: 0.016283
386000 -- [-4077.858] (-4070.260) (-4061.817) (-4079.400) * (-4065.751) (-4064.252) [-4069.503] (-4071.987) -- 0:09:32
387000 -- (-4063.442) (-4076.293) (-4080.908) [-4061.971] * [-4064.154] (-4072.531) (-4070.258) (-4061.076) -- 0:09:31
388000 -- (-4070.734) (-4080.288) [-4064.562] (-4071.014) * [-4068.886] (-4067.086) (-4066.215) (-4072.366) -- 0:09:29
389000 -- (-4064.557) (-4078.400) (-4067.868) [-4078.116] * (-4070.382) (-4068.132) [-4076.713] (-4059.612) -- 0:09:28
390000 -- (-4079.264) (-4077.929) [-4068.529] (-4077.949) * (-4075.684) [-4061.607] (-4070.472) (-4078.758) -- 0:09:27
Average standard deviation of split frequencies: 0.016189
391000 -- (-4083.753) (-4066.282) [-4059.201] (-4067.924) * (-4074.296) (-4070.547) [-4058.636] (-4069.603) -- 0:09:26
392000 -- (-4091.278) (-4072.816) (-4066.647) [-4079.887] * (-4068.753) (-4074.943) (-4077.820) [-4060.615] -- 0:09:26
393000 -- (-4079.834) (-4082.679) [-4061.100] (-4079.257) * (-4072.528) (-4066.616) [-4060.191] (-4071.297) -- 0:09:25
394000 -- [-4060.341] (-4073.715) (-4067.994) (-4077.190) * [-4072.361] (-4062.795) (-4073.091) (-4072.497) -- 0:09:24
395000 -- (-4078.689) (-4085.274) [-4063.752] (-4069.613) * (-4067.822) [-4070.428] (-4063.096) (-4083.593) -- 0:09:23
Average standard deviation of split frequencies: 0.017013
396000 -- (-4075.709) (-4070.480) [-4065.992] (-4081.078) * (-4081.332) (-4073.705) (-4071.322) [-4061.893] -- 0:09:22
397000 -- [-4065.886] (-4068.890) (-4080.862) (-4079.057) * (-4070.766) (-4068.995) [-4061.101] (-4069.991) -- 0:09:21
398000 -- [-4076.215] (-4064.474) (-4068.253) (-4074.480) * [-4068.786] (-4080.731) (-4067.319) (-4084.211) -- 0:09:21
399000 -- [-4065.572] (-4076.262) (-4074.027) (-4079.093) * [-4067.438] (-4064.484) (-4067.703) (-4071.953) -- 0:09:18
400000 -- [-4060.901] (-4064.365) (-4079.593) (-4087.948) * (-4088.261) (-4071.909) [-4070.970] (-4074.215) -- 0:09:18
Average standard deviation of split frequencies: 0.015981
401000 -- [-4067.286] (-4072.656) (-4077.817) (-4079.299) * (-4067.703) [-4070.695] (-4071.846) (-4062.111) -- 0:09:17
402000 -- (-4083.755) (-4080.315) [-4062.697] (-4064.967) * [-4061.269] (-4090.593) (-4061.410) (-4069.734) -- 0:09:16
403000 -- (-4079.563) (-4067.977) [-4063.209] (-4083.212) * (-4071.577) (-4062.754) [-4057.045] (-4068.963) -- 0:09:15
404000 -- (-4078.762) (-4073.551) [-4073.056] (-4061.039) * [-4072.342] (-4076.630) (-4070.115) (-4086.481) -- 0:09:14
405000 -- (-4077.711) [-4068.045] (-4065.353) (-4074.057) * [-4063.402] (-4086.067) (-4080.257) (-4072.733) -- 0:09:13
Average standard deviation of split frequencies: 0.016395
406000 -- (-4071.736) (-4076.926) [-4084.227] (-4077.594) * (-4074.020) (-4081.787) (-4072.988) [-4071.841] -- 0:09:13
407000 -- (-4067.208) (-4071.805) [-4072.184] (-4083.062) * (-4075.859) (-4077.597) (-4076.056) [-4067.435] -- 0:09:12
408000 -- (-4080.289) (-4067.439) (-4070.592) [-4070.025] * (-4070.860) (-4067.004) [-4074.929] (-4080.919) -- 0:09:11
409000 -- (-4076.459) (-4068.087) [-4066.668] (-4085.503) * [-4065.408] (-4078.929) (-4075.968) (-4062.997) -- 0:09:10
410000 -- (-4077.942) (-4082.448) (-4068.502) [-4066.562] * (-4074.679) [-4065.787] (-4081.742) (-4067.546) -- 0:09:09
Average standard deviation of split frequencies: 0.017697
411000 -- (-4066.096) [-4064.709] (-4066.472) (-4079.057) * (-4074.949) (-4078.132) [-4074.079] (-4078.619) -- 0:09:08
412000 -- (-4067.875) (-4060.143) [-4065.013] (-4075.418) * [-4069.187] (-4071.423) (-4073.294) (-4071.395) -- 0:09:08
413000 -- (-4069.565) (-4065.931) (-4074.590) [-4065.380] * (-4066.589) [-4067.391] (-4071.651) (-4074.888) -- 0:09:05
414000 -- (-4068.336) [-4067.410] (-4073.080) (-4077.377) * (-4072.053) (-4072.909) (-4075.230) [-4059.325] -- 0:09:04
415000 -- (-4063.656) (-4076.603) (-4065.372) [-4067.805] * (-4069.294) (-4069.527) [-4073.188] (-4084.885) -- 0:09:04
Average standard deviation of split frequencies: 0.016951
416000 -- (-4073.033) [-4072.781] (-4067.145) (-4064.606) * (-4078.405) [-4058.788] (-4064.509) (-4068.281) -- 0:09:03
417000 -- (-4083.538) (-4074.950) [-4062.968] (-4077.231) * (-4070.646) (-4080.639) [-4075.911] (-4075.936) -- 0:09:02
418000 -- [-4066.472] (-4070.586) (-4067.394) (-4060.313) * (-4079.155) (-4069.617) (-4064.786) [-4071.153] -- 0:09:01
419000 -- (-4072.626) (-4075.721) [-4058.676] (-4066.419) * [-4070.086] (-4075.080) (-4064.719) (-4064.651) -- 0:09:00
420000 -- (-4072.181) (-4067.367) [-4066.317] (-4075.917) * (-4082.431) (-4068.319) [-4065.594] (-4067.221) -- 0:08:59
Average standard deviation of split frequencies: 0.017556
421000 -- [-4068.533] (-4075.393) (-4069.712) (-4074.360) * [-4068.240] (-4074.385) (-4068.771) (-4079.431) -- 0:08:59
422000 -- (-4069.070) (-4070.429) [-4068.089] (-4083.465) * (-4071.952) (-4081.585) [-4069.119] (-4072.182) -- 0:08:58
423000 -- (-4073.302) (-4064.846) [-4059.700] (-4076.565) * (-4073.157) (-4077.562) (-4061.884) [-4074.058] -- 0:08:57
424000 -- (-4079.986) [-4062.530] (-4066.922) (-4085.427) * [-4072.019] (-4074.567) (-4065.149) (-4074.506) -- 0:08:56
425000 -- (-4083.373) (-4079.170) (-4086.867) [-4064.755] * (-4072.312) (-4075.200) (-4068.401) [-4061.066] -- 0:08:54
Average standard deviation of split frequencies: 0.016599
426000 -- (-4077.861) (-4075.995) [-4067.435] (-4081.611) * (-4075.718) (-4075.268) (-4089.906) [-4063.770] -- 0:08:53
427000 -- (-4069.697) [-4066.540] (-4085.525) (-4075.036) * (-4084.507) [-4062.464] (-4073.779) (-4067.028) -- 0:08:52
428000 -- (-4072.303) (-4076.450) (-4085.827) [-4062.899] * (-4064.889) [-4069.711] (-4071.701) (-4065.492) -- 0:08:51
429000 -- (-4081.083) [-4075.950] (-4078.652) (-4067.530) * (-4072.057) (-4065.574) (-4068.438) [-4072.112] -- 0:08:51
430000 -- (-4074.511) (-4089.178) (-4093.219) [-4066.067] * (-4077.741) (-4071.390) [-4068.975] (-4071.182) -- 0:08:50
Average standard deviation of split frequencies: 0.016328
431000 -- (-4076.065) [-4068.628] (-4074.869) (-4071.903) * [-4071.886] (-4074.605) (-4079.081) (-4085.912) -- 0:08:49
432000 -- (-4072.700) (-4058.649) [-4066.450] (-4072.090) * [-4061.291] (-4081.046) (-4085.786) (-4074.686) -- 0:08:48
433000 -- (-4074.830) (-4064.728) [-4062.230] (-4069.513) * (-4068.577) (-4077.148) [-4067.032] (-4073.409) -- 0:08:47
434000 -- (-4086.160) (-4067.087) [-4071.666] (-4079.753) * (-4075.611) (-4072.268) (-4087.158) [-4070.540] -- 0:08:46
435000 -- [-4074.807] (-4065.682) (-4069.905) (-4069.885) * (-4063.990) (-4075.088) (-4067.508) [-4061.474] -- 0:08:46
Average standard deviation of split frequencies: 0.015182
436000 -- [-4059.956] (-4076.787) (-4065.936) (-4068.853) * (-4062.471) [-4076.014] (-4071.986) (-4078.028) -- 0:08:45
437000 -- (-4066.463) [-4061.882] (-4065.660) (-4075.463) * (-4066.790) (-4071.363) [-4064.644] (-4076.928) -- 0:08:43
438000 -- (-4066.760) (-4072.865) [-4062.996] (-4074.976) * (-4062.890) (-4071.571) (-4091.677) [-4058.796] -- 0:08:42
439000 -- [-4069.292] (-4060.535) (-4068.104) (-4085.149) * (-4078.630) (-4077.012) (-4085.828) [-4059.014] -- 0:08:41
440000 -- (-4073.878) (-4071.780) [-4070.594] (-4066.716) * (-4078.076) (-4065.226) (-4077.743) [-4059.401] -- 0:08:40
Average standard deviation of split frequencies: 0.014486
441000 -- (-4095.498) (-4072.715) [-4070.727] (-4064.802) * [-4070.038] (-4069.459) (-4068.514) (-4082.926) -- 0:08:39
442000 -- (-4074.110) (-4070.219) [-4065.079] (-4063.902) * (-4070.169) [-4067.556] (-4065.996) (-4063.736) -- 0:08:38
443000 -- (-4074.210) (-4086.166) (-4073.617) [-4062.127] * (-4074.084) (-4078.607) (-4075.230) [-4063.734] -- 0:08:38
444000 -- (-4087.417) [-4070.559] (-4085.857) (-4082.057) * (-4077.322) (-4076.601) (-4063.734) [-4069.819] -- 0:08:37
445000 -- (-4075.141) (-4085.583) (-4065.981) [-4063.052] * (-4080.048) (-4076.463) (-4070.091) [-4061.302] -- 0:08:36
Average standard deviation of split frequencies: 0.014974
446000 -- [-4067.728] (-4076.290) (-4077.437) (-4072.939) * [-4074.546] (-4066.806) (-4072.944) (-4069.799) -- 0:08:35
447000 -- (-4075.996) (-4062.755) [-4075.890] (-4070.272) * (-4069.137) (-4077.995) [-4082.811] (-4071.302) -- 0:08:34
448000 -- (-4071.297) (-4074.674) (-4060.777) [-4067.834] * (-4068.519) [-4070.557] (-4085.156) (-4075.152) -- 0:08:33
449000 -- [-4063.765] (-4073.153) (-4060.452) (-4066.118) * [-4075.104] (-4065.863) (-4085.915) (-4064.769) -- 0:08:31
450000 -- [-4081.841] (-4080.537) (-4072.903) (-4084.485) * (-4074.906) (-4070.913) [-4067.947] (-4067.568) -- 0:08:30
Average standard deviation of split frequencies: 0.015429
451000 -- (-4068.883) [-4070.809] (-4080.619) (-4075.870) * (-4074.741) [-4069.753] (-4079.270) (-4067.614) -- 0:08:30
452000 -- (-4067.926) [-4063.530] (-4068.861) (-4084.305) * (-4077.925) (-4071.009) (-4086.673) [-4071.912] -- 0:08:29
453000 -- (-4085.577) (-4069.218) [-4068.312] (-4071.850) * [-4082.326] (-4077.288) (-4076.498) (-4075.681) -- 0:08:28
454000 -- (-4074.520) (-4078.655) (-4071.465) [-4064.305] * [-4071.502] (-4069.946) (-4068.795) (-4076.313) -- 0:08:27
455000 -- (-4072.019) [-4064.854] (-4063.798) (-4072.920) * (-4077.161) [-4073.321] (-4070.662) (-4078.237) -- 0:08:26
Average standard deviation of split frequencies: 0.015894
456000 -- [-4073.192] (-4070.027) (-4100.319) (-4066.387) * (-4081.477) (-4076.218) (-4060.964) [-4076.276] -- 0:08:25
457000 -- [-4068.809] (-4073.478) (-4065.086) (-4091.579) * [-4067.107] (-4074.624) (-4072.045) (-4072.136) -- 0:08:24
458000 -- (-4077.365) [-4061.482] (-4072.785) (-4075.071) * (-4068.449) (-4075.515) [-4073.507] (-4065.069) -- 0:08:24
459000 -- (-4067.142) (-4076.740) [-4064.326] (-4067.015) * (-4084.163) [-4075.091] (-4064.375) (-4074.465) -- 0:08:23
460000 -- (-4070.275) (-4079.134) [-4066.064] (-4066.354) * (-4071.427) (-4075.547) (-4074.397) [-4069.765] -- 0:08:22
Average standard deviation of split frequencies: 0.015136
461000 -- (-4071.068) (-4079.847) [-4077.036] (-4071.061) * [-4060.669] (-4080.477) (-4069.776) (-4070.432) -- 0:08:21
462000 -- (-4064.742) (-4061.374) [-4076.196] (-4062.760) * (-4080.827) [-4064.375] (-4069.584) (-4086.196) -- 0:08:20
463000 -- [-4056.824] (-4067.373) (-4072.406) (-4069.167) * [-4076.170] (-4073.092) (-4088.938) (-4067.221) -- 0:08:18
464000 -- [-4061.458] (-4070.088) (-4081.665) (-4072.706) * (-4065.723) (-4079.928) [-4060.514] (-4067.799) -- 0:08:17
465000 -- (-4075.071) [-4073.903] (-4077.343) (-4065.357) * (-4064.485) [-4059.398] (-4071.631) (-4062.395) -- 0:08:17
Average standard deviation of split frequencies: 0.014668
466000 -- (-4073.504) [-4073.380] (-4065.503) (-4070.846) * (-4071.079) (-4073.831) (-4070.655) [-4076.072] -- 0:08:16
467000 -- (-4073.131) [-4071.601] (-4074.011) (-4067.587) * (-4072.262) (-4069.985) (-4066.380) [-4065.729] -- 0:08:15
468000 -- (-4085.214) (-4091.516) (-4069.901) [-4066.521] * (-4079.196) [-4080.060] (-4078.533) (-4082.464) -- 0:08:14
469000 -- (-4075.839) [-4065.952] (-4070.583) (-4077.330) * [-4068.395] (-4070.945) (-4067.389) (-4079.158) -- 0:08:13
470000 -- (-4084.864) [-4072.610] (-4068.045) (-4066.533) * [-4070.304] (-4076.654) (-4071.961) (-4071.985) -- 0:08:12
Average standard deviation of split frequencies: 0.013479
471000 -- [-4065.200] (-4071.237) (-4075.615) (-4090.991) * (-4074.422) (-4070.744) [-4064.023] (-4065.679) -- 0:08:11
472000 -- (-4072.183) (-4066.541) [-4072.427] (-4060.989) * (-4094.677) [-4072.875] (-4062.399) (-4082.003) -- 0:08:11
473000 -- [-4072.004] (-4078.060) (-4082.203) (-4065.552) * (-4083.424) (-4059.979) [-4061.625] (-4084.580) -- 0:08:10
474000 -- [-4065.490] (-4074.201) (-4082.427) (-4076.027) * (-4072.526) [-4063.707] (-4073.397) (-4068.034) -- 0:08:09
475000 -- (-4065.223) [-4073.777] (-4068.411) (-4071.473) * (-4077.088) (-4063.512) (-4057.741) [-4065.551] -- 0:08:08
Average standard deviation of split frequencies: 0.013617
476000 -- (-4062.748) (-4061.236) [-4063.029] (-4071.342) * [-4070.446] (-4064.197) (-4073.299) (-4069.654) -- 0:08:07
477000 -- (-4078.652) [-4072.117] (-4074.195) (-4079.019) * (-4080.023) [-4066.323] (-4086.542) (-4069.283) -- 0:08:06
478000 -- (-4061.431) [-4067.537] (-4072.053) (-4061.314) * (-4076.052) (-4077.607) (-4066.113) [-4075.962] -- 0:08:05
479000 -- [-4061.720] (-4071.414) (-4070.517) (-4082.807) * (-4076.458) (-4068.929) (-4072.241) [-4060.566] -- 0:08:05
480000 -- (-4071.098) (-4084.105) [-4062.651] (-4070.562) * (-4080.427) [-4069.969] (-4080.880) (-4069.765) -- 0:08:03
Average standard deviation of split frequencies: 0.014098
481000 -- (-4075.942) (-4073.101) [-4077.727] (-4078.145) * [-4065.974] (-4078.092) (-4066.059) (-4072.123) -- 0:08:02
482000 -- [-4080.799] (-4074.980) (-4080.850) (-4065.644) * (-4077.813) (-4072.320) (-4084.682) [-4064.766] -- 0:08:01
483000 -- (-4081.641) [-4064.540] (-4076.880) (-4079.979) * [-4073.177] (-4068.460) (-4088.326) (-4072.767) -- 0:08:00
484000 -- (-4070.604) (-4060.492) [-4070.228] (-4069.968) * [-4076.489] (-4069.898) (-4065.897) (-4064.842) -- 0:07:59
485000 -- (-4066.737) (-4074.781) (-4078.814) [-4060.490] * (-4085.787) (-4084.069) (-4081.459) [-4061.306] -- 0:07:58
Average standard deviation of split frequencies: 0.013620
486000 -- (-4079.343) [-4068.293] (-4087.211) (-4073.883) * [-4075.259] (-4070.270) (-4066.848) (-4069.923) -- 0:07:58
487000 -- (-4076.803) (-4088.649) (-4083.777) [-4071.079] * (-4073.192) [-4072.153] (-4070.829) (-4070.302) -- 0:07:57
488000 -- (-4073.193) (-4072.356) (-4063.176) [-4063.434] * (-4073.522) (-4064.091) [-4058.686] (-4068.400) -- 0:07:56
489000 -- (-4082.621) (-4061.544) [-4060.740] (-4068.139) * (-4073.736) (-4067.948) [-4066.400] (-4068.184) -- 0:07:55
490000 -- (-4065.053) (-4079.825) (-4066.297) [-4063.092] * (-4072.215) (-4064.737) (-4073.877) [-4083.012] -- 0:07:54
Average standard deviation of split frequencies: 0.013410
491000 -- (-4094.998) (-4062.460) [-4073.210] (-4076.927) * (-4076.325) [-4072.636] (-4064.237) (-4080.038) -- 0:07:53
492000 -- (-4072.611) (-4078.956) (-4072.646) [-4066.186] * (-4080.854) (-4075.969) [-4061.856] (-4069.810) -- 0:07:52
493000 -- [-4068.758] (-4079.955) (-4071.465) (-4078.287) * (-4065.084) (-4063.768) [-4077.441] (-4073.950) -- 0:07:52
494000 -- (-4068.229) (-4074.715) (-4069.845) [-4063.626] * (-4068.293) (-4083.695) [-4057.084] (-4069.604) -- 0:07:50
495000 -- (-4067.161) [-4071.457] (-4061.548) (-4077.803) * (-4066.922) (-4078.042) [-4067.105] (-4077.572) -- 0:07:49
Average standard deviation of split frequencies: 0.013623
496000 -- (-4083.248) [-4067.424] (-4074.184) (-4080.887) * (-4082.581) (-4076.315) (-4067.365) [-4071.003] -- 0:07:48
497000 -- (-4078.792) (-4066.339) [-4064.328] (-4076.191) * (-4087.133) (-4076.593) (-4078.547) [-4078.949] -- 0:07:47
498000 -- [-4071.468] (-4071.903) (-4074.432) (-4070.400) * (-4077.172) (-4077.549) [-4060.012] (-4071.991) -- 0:07:46
499000 -- (-4062.456) (-4067.762) (-4076.798) [-4074.699] * (-4061.135) (-4072.270) [-4063.301] (-4065.696) -- 0:07:45
500000 -- (-4089.049) (-4078.330) [-4069.440] (-4066.513) * (-4067.971) (-4072.490) [-4066.340] (-4068.822) -- 0:07:45
Average standard deviation of split frequencies: 0.013221
501000 -- [-4069.476] (-4064.856) (-4066.958) (-4087.538) * (-4080.195) [-4065.625] (-4070.087) (-4068.218) -- 0:07:44
502000 -- (-4069.836) [-4069.503] (-4080.487) (-4065.296) * [-4061.571] (-4070.969) (-4074.345) (-4068.634) -- 0:07:43
503000 -- [-4063.067] (-4071.011) (-4074.845) (-4082.511) * [-4061.117] (-4065.043) (-4074.343) (-4067.519) -- 0:07:42
504000 -- (-4080.065) (-4071.992) (-4068.152) [-4072.221] * (-4065.846) (-4072.602) [-4068.427] (-4082.936) -- 0:07:41
505000 -- (-4075.347) (-4075.724) (-4081.010) [-4064.017] * [-4062.809] (-4073.389) (-4055.688) (-4065.851) -- 0:07:40
Average standard deviation of split frequencies: 0.013276
506000 -- (-4069.515) [-4067.493] (-4086.637) (-4076.459) * (-4071.202) (-4071.601) [-4069.756] (-4078.733) -- 0:07:39
507000 -- (-4074.270) (-4068.210) (-4070.902) [-4065.697] * (-4065.257) (-4075.160) [-4067.413] (-4077.622) -- 0:07:38
508000 -- (-4074.548) (-4067.414) (-4082.232) [-4067.224] * (-4065.858) (-4083.237) (-4064.943) [-4073.749] -- 0:07:38
509000 -- (-4064.209) (-4072.440) (-4071.034) [-4075.464] * (-4074.699) (-4072.967) [-4073.080] (-4070.847) -- 0:07:37
510000 -- [-4066.685] (-4076.458) (-4062.061) (-4064.802) * (-4083.913) (-4065.570) [-4069.239] (-4077.123) -- 0:07:36
Average standard deviation of split frequencies: 0.012693
511000 -- (-4066.938) [-4064.030] (-4079.895) (-4064.691) * (-4079.651) (-4066.306) (-4072.641) [-4065.681] -- 0:07:35
512000 -- (-4074.303) (-4070.155) (-4085.085) [-4074.451] * (-4075.982) (-4072.723) (-4063.161) [-4065.333] -- 0:07:34
513000 -- (-4077.494) (-4064.284) (-4066.698) [-4063.807] * (-4057.735) (-4073.735) (-4064.881) [-4086.331] -- 0:07:33
514000 -- [-4075.839] (-4067.598) (-4064.019) (-4069.909) * (-4071.758) (-4067.615) [-4064.781] (-4070.895) -- 0:07:32
515000 -- (-4085.536) [-4066.510] (-4068.226) (-4069.180) * [-4063.976] (-4066.417) (-4075.144) (-4085.296) -- 0:07:32
Average standard deviation of split frequencies: 0.011762
516000 -- (-4077.874) (-4080.124) (-4076.198) [-4064.454] * (-4075.490) [-4056.766] (-4056.811) (-4100.722) -- 0:07:31
517000 -- (-4077.549) (-4068.512) [-4067.141] (-4065.234) * (-4084.174) [-4071.897] (-4068.941) (-4078.837) -- 0:07:30
518000 -- (-4081.422) (-4072.707) [-4070.140] (-4067.461) * (-4089.336) [-4070.603] (-4071.369) (-4068.582) -- 0:07:29
519000 -- (-4073.597) (-4072.134) (-4085.561) [-4072.031] * (-4075.432) (-4070.710) [-4068.924] (-4084.679) -- 0:07:28
520000 -- (-4075.320) (-4066.471) [-4069.505] (-4069.840) * (-4064.923) (-4082.815) [-4071.247] (-4065.048) -- 0:07:27
Average standard deviation of split frequencies: 0.012449
521000 -- (-4072.376) (-4070.090) (-4073.348) [-4058.279] * [-4062.021] (-4083.425) (-4068.380) (-4069.845) -- 0:07:25
522000 -- [-4066.659] (-4079.676) (-4073.980) (-4074.045) * (-4073.709) [-4071.676] (-4071.626) (-4069.390) -- 0:07:25
523000 -- (-4079.171) (-4063.530) (-4073.359) [-4065.942] * (-4071.146) (-4072.072) [-4079.438] (-4076.690) -- 0:07:24
524000 -- (-4076.038) (-4064.366) [-4068.508] (-4076.924) * [-4076.039] (-4065.176) (-4068.370) (-4088.202) -- 0:07:23
525000 -- (-4071.391) [-4071.356] (-4079.402) (-4082.140) * (-4084.832) (-4067.735) (-4064.073) [-4078.002] -- 0:07:22
Average standard deviation of split frequencies: 0.011837
526000 -- [-4062.812] (-4060.401) (-4077.615) (-4083.000) * [-4077.149] (-4074.580) (-4072.287) (-4080.853) -- 0:07:21
527000 -- (-4087.419) (-4069.023) (-4079.728) [-4078.720] * [-4073.359] (-4073.636) (-4090.914) (-4076.335) -- 0:07:20
528000 -- (-4075.411) (-4072.345) (-4074.603) [-4064.191] * (-4074.364) [-4063.941] (-4073.003) (-4067.892) -- 0:07:19
529000 -- (-4060.725) (-4066.679) (-4076.219) [-4064.252] * (-4062.683) (-4074.321) (-4075.785) [-4068.585] -- 0:07:18
530000 -- (-4065.928) (-4062.576) (-4073.201) [-4072.752] * (-4075.696) [-4071.010] (-4084.384) (-4075.085) -- 0:07:18
Average standard deviation of split frequencies: 0.011215
531000 -- (-4070.358) (-4071.370) (-4071.342) [-4071.443] * (-4075.271) (-4067.156) (-4071.997) [-4072.732] -- 0:07:17
532000 -- [-4074.461] (-4078.833) (-4074.026) (-4070.528) * (-4075.709) (-4079.329) [-4073.200] (-4074.917) -- 0:07:16
533000 -- (-4073.760) (-4065.573) (-4070.770) [-4063.139] * (-4066.711) (-4070.062) [-4065.636] (-4082.247) -- 0:07:15
534000 -- (-4063.118) [-4073.253] (-4084.201) (-4069.035) * (-4082.907) (-4072.721) [-4076.346] (-4074.620) -- 0:07:14
535000 -- [-4057.654] (-4081.267) (-4071.466) (-4066.230) * (-4069.312) [-4068.516] (-4073.026) (-4070.047) -- 0:07:13
Average standard deviation of split frequencies: 0.011030
536000 -- (-4077.264) [-4077.747] (-4065.605) (-4063.355) * (-4062.788) (-4068.045) (-4072.698) [-4073.309] -- 0:07:12
537000 -- (-4081.802) (-4080.502) [-4061.234] (-4073.897) * (-4086.337) (-4080.982) [-4061.300] (-4063.273) -- 0:07:11
538000 -- (-4070.794) (-4075.854) [-4066.738] (-4076.034) * [-4072.255] (-4067.094) (-4065.603) (-4082.804) -- 0:07:10
539000 -- (-4084.627) (-4069.981) (-4074.401) [-4066.275] * (-4067.185) [-4057.380] (-4059.822) (-4072.253) -- 0:07:09
540000 -- (-4071.646) [-4062.402] (-4074.564) (-4068.640) * (-4078.960) (-4076.229) (-4073.152) [-4067.897] -- 0:07:08
Average standard deviation of split frequencies: 0.011044
541000 -- [-4077.418] (-4074.424) (-4079.321) (-4060.300) * (-4067.865) (-4087.384) (-4068.778) [-4066.114] -- 0:07:07
542000 -- [-4067.017] (-4076.449) (-4070.201) (-4065.380) * (-4071.036) (-4072.394) [-4070.781] (-4063.790) -- 0:07:06
543000 -- (-4070.201) (-4077.770) (-4074.040) [-4069.082] * (-4075.117) (-4069.761) [-4068.788] (-4071.484) -- 0:07:05
544000 -- [-4060.611] (-4062.947) (-4087.139) (-4070.357) * (-4067.643) (-4067.861) [-4064.263] (-4071.990) -- 0:07:04
545000 -- (-4071.662) (-4083.193) [-4065.157] (-4068.352) * (-4082.057) [-4071.928] (-4068.762) (-4068.305) -- 0:07:04
Average standard deviation of split frequencies: 0.011116
546000 -- (-4067.078) (-4067.917) [-4064.717] (-4062.578) * [-4063.005] (-4069.997) (-4084.245) (-4077.727) -- 0:07:03
547000 -- (-4065.829) (-4068.176) [-4070.817] (-4081.664) * (-4063.486) (-4074.615) [-4056.532] (-4068.213) -- 0:07:02
548000 -- (-4059.722) [-4066.453] (-4062.910) (-4071.665) * (-4080.630) (-4091.601) [-4072.046] (-4079.696) -- 0:07:01
549000 -- (-4080.597) (-4073.005) (-4064.473) [-4068.699] * (-4087.378) (-4065.346) [-4075.935] (-4079.456) -- 0:07:00
550000 -- [-4067.386] (-4093.215) (-4067.671) (-4072.609) * (-4077.654) (-4063.085) (-4075.057) [-4062.003] -- 0:06:59
Average standard deviation of split frequencies: 0.010594
551000 -- (-4078.673) [-4074.729] (-4075.650) (-4073.389) * (-4075.830) [-4070.063] (-4068.548) (-4067.157) -- 0:06:58
552000 -- [-4064.705] (-4072.218) (-4068.283) (-4073.336) * (-4072.546) [-4067.969] (-4073.056) (-4079.211) -- 0:06:57
553000 -- (-4072.917) [-4071.192] (-4072.193) (-4062.237) * [-4076.587] (-4057.780) (-4070.202) (-4082.515) -- 0:06:57
554000 -- (-4074.436) (-4081.822) (-4077.315) [-4063.249] * (-4066.219) (-4077.687) (-4073.584) [-4067.023] -- 0:06:56
555000 -- (-4073.522) (-4065.941) [-4072.470] (-4068.457) * (-4069.499) [-4068.099] (-4077.001) (-4069.823) -- 0:06:55
Average standard deviation of split frequencies: 0.010527
556000 -- (-4067.294) [-4071.092] (-4066.560) (-4075.621) * (-4062.174) [-4076.173] (-4083.289) (-4070.594) -- 0:06:53
557000 -- (-4071.516) (-4076.175) [-4061.981] (-4067.999) * (-4078.609) (-4084.228) [-4062.523] (-4079.843) -- 0:06:52
558000 -- [-4065.453] (-4072.576) (-4062.279) (-4073.926) * [-4069.016] (-4066.003) (-4067.103) (-4071.728) -- 0:06:51
559000 -- (-4062.537) (-4076.707) (-4065.613) [-4065.682] * (-4070.555) (-4065.158) [-4064.586] (-4071.901) -- 0:06:51
560000 -- [-4071.262] (-4073.632) (-4082.936) (-4067.535) * (-4075.177) (-4072.580) [-4064.140] (-4089.897) -- 0:06:50
Average standard deviation of split frequencies: 0.010265
561000 -- (-4080.184) [-4061.073] (-4075.378) (-4069.311) * (-4066.775) (-4083.667) (-4063.161) [-4070.782] -- 0:06:49
562000 -- (-4062.133) (-4062.891) (-4068.461) [-4073.685] * (-4075.682) (-4079.767) [-4073.296] (-4064.498) -- 0:06:48
563000 -- [-4061.175] (-4064.243) (-4080.215) (-4070.602) * [-4061.810] (-4073.361) (-4068.830) (-4075.988) -- 0:06:47
564000 -- (-4072.661) [-4066.805] (-4064.815) (-4077.747) * (-4066.777) (-4071.472) [-4070.732] (-4072.574) -- 0:06:46
565000 -- [-4069.565] (-4086.703) (-4066.954) (-4077.812) * (-4069.055) (-4069.395) [-4071.127] (-4077.896) -- 0:06:45
Average standard deviation of split frequencies: 0.009335
566000 -- (-4064.517) (-4086.305) [-4079.594] (-4061.728) * (-4074.846) [-4072.729] (-4056.279) (-4076.530) -- 0:06:44
567000 -- (-4066.175) (-4075.798) (-4083.286) [-4067.607] * (-4066.046) (-4065.885) [-4067.591] (-4071.755) -- 0:06:43
568000 -- (-4084.363) [-4067.147] (-4073.126) (-4063.039) * [-4066.958] (-4067.872) (-4066.872) (-4071.706) -- 0:06:43
569000 -- [-4069.047] (-4071.495) (-4071.970) (-4072.470) * [-4069.981] (-4074.007) (-4076.350) (-4065.570) -- 0:06:42
570000 -- (-4073.604) (-4068.024) (-4069.622) [-4071.812] * (-4063.665) (-4079.723) (-4068.809) [-4073.541] -- 0:06:41
Average standard deviation of split frequencies: 0.009121
571000 -- (-4069.861) (-4066.853) [-4071.803] (-4063.107) * (-4075.330) (-4082.194) (-4070.372) [-4055.586] -- 0:06:40
572000 -- (-4077.017) [-4065.247] (-4083.699) (-4067.790) * (-4068.075) (-4092.612) [-4071.452] (-4078.325) -- 0:06:39
573000 -- (-4063.421) (-4076.891) [-4065.063] (-4073.351) * [-4074.029] (-4081.698) (-4077.952) (-4070.921) -- 0:06:38
574000 -- [-4061.073] (-4064.185) (-4079.438) (-4068.897) * [-4070.222] (-4073.385) (-4073.030) (-4056.844) -- 0:06:37
575000 -- [-4070.917] (-4073.448) (-4081.228) (-4059.920) * [-4076.321] (-4069.500) (-4079.547) (-4071.736) -- 0:06:36
Average standard deviation of split frequencies: 0.008934
576000 -- (-4079.512) (-4072.358) [-4061.255] (-4062.366) * [-4061.544] (-4070.903) (-4077.312) (-4069.371) -- 0:06:36
577000 -- [-4074.153] (-4068.018) (-4066.869) (-4081.242) * (-4065.175) (-4080.960) (-4079.537) [-4061.154] -- 0:06:34
578000 -- (-4067.787) (-4071.882) (-4075.171) [-4060.804] * (-4071.459) (-4068.925) [-4063.341] (-4071.181) -- 0:06:33
579000 -- (-4075.476) (-4079.162) (-4074.472) [-4066.141] * (-4070.210) [-4058.590] (-4071.270) (-4073.315) -- 0:06:32
580000 -- [-4066.602] (-4070.326) (-4066.639) (-4067.705) * (-4063.725) [-4064.257] (-4085.199) (-4072.600) -- 0:06:31
Average standard deviation of split frequencies: 0.008321
581000 -- (-4065.097) [-4070.664] (-4069.365) (-4064.863) * (-4067.029) (-4077.296) [-4061.051] (-4071.860) -- 0:06:30
582000 -- (-4080.942) [-4063.619] (-4071.231) (-4074.118) * (-4062.637) [-4063.403] (-4070.553) (-4086.333) -- 0:06:29
583000 -- (-4074.755) (-4066.990) (-4064.718) [-4060.840] * (-4068.518) [-4075.274] (-4072.656) (-4081.784) -- 0:06:29
584000 -- (-4074.142) [-4075.719] (-4061.475) (-4072.249) * (-4073.892) [-4070.951] (-4071.652) (-4082.673) -- 0:06:28
585000 -- (-4071.747) [-4074.980] (-4077.650) (-4063.722) * (-4071.780) [-4066.638] (-4066.376) (-4080.388) -- 0:06:27
Average standard deviation of split frequencies: 0.007642
586000 -- (-4078.060) (-4082.634) [-4067.521] (-4077.307) * [-4060.270] (-4082.669) (-4070.711) (-4080.710) -- 0:06:26
587000 -- (-4074.473) (-4061.853) (-4065.915) [-4059.913] * (-4073.782) (-4073.871) [-4065.392] (-4074.045) -- 0:06:25
588000 -- [-4075.482] (-4073.301) (-4071.214) (-4069.311) * [-4065.284] (-4063.583) (-4062.919) (-4076.642) -- 0:06:24
589000 -- (-4078.136) (-4069.378) [-4073.480] (-4072.261) * (-4073.788) [-4067.246] (-4063.712) (-4082.231) -- 0:06:23
590000 -- (-4062.407) (-4077.318) [-4075.877] (-4086.249) * [-4063.904] (-4054.807) (-4071.859) (-4083.363) -- 0:06:22
Average standard deviation of split frequencies: 0.007083
591000 -- (-4082.284) (-4071.435) (-4085.050) [-4071.458] * [-4067.055] (-4083.124) (-4072.424) (-4074.740) -- 0:06:22
592000 -- (-4068.440) (-4075.843) (-4068.721) [-4069.332] * (-4069.073) (-4073.813) [-4068.574] (-4086.755) -- 0:06:20
593000 -- (-4076.432) (-4083.169) [-4061.637] (-4075.903) * (-4075.035) [-4070.277] (-4071.779) (-4080.905) -- 0:06:20
594000 -- (-4077.495) (-4080.951) (-4070.828) [-4073.138] * [-4065.546] (-4069.538) (-4072.905) (-4076.804) -- 0:06:19
595000 -- (-4070.995) (-4075.329) (-4067.666) [-4065.678] * (-4068.917) [-4086.121] (-4069.839) (-4078.204) -- 0:06:17
Average standard deviation of split frequencies: 0.007217
596000 -- [-4067.070] (-4069.961) (-4075.547) (-4069.882) * [-4062.656] (-4079.286) (-4075.524) (-4063.108) -- 0:06:16
597000 -- (-4082.733) (-4069.641) [-4067.984] (-4069.657) * (-4070.793) [-4069.577] (-4068.527) (-4066.507) -- 0:06:15
598000 -- (-4071.915) [-4063.613] (-4059.118) (-4071.381) * (-4075.813) [-4075.865] (-4069.037) (-4091.004) -- 0:06:15
599000 -- (-4078.738) (-4080.152) [-4065.586] (-4073.042) * (-4077.143) (-4079.857) (-4072.536) [-4062.107] -- 0:06:14
600000 -- (-4074.198) (-4078.477) (-4081.437) [-4069.992] * (-4079.523) [-4061.262] (-4065.531) (-4068.566) -- 0:06:13
Average standard deviation of split frequencies: 0.007161
601000 -- [-4068.357] (-4084.093) (-4066.325) (-4071.694) * [-4078.281] (-4074.298) (-4072.662) (-4071.784) -- 0:06:12
602000 -- (-4074.832) [-4073.554] (-4072.973) (-4062.564) * (-4068.108) [-4072.680] (-4067.957) (-4095.015) -- 0:06:11
603000 -- (-4069.305) (-4079.970) [-4062.838] (-4076.280) * (-4073.057) (-4086.641) [-4071.707] (-4076.679) -- 0:06:10
604000 -- (-4078.998) [-4066.054] (-4071.425) (-4084.575) * (-4073.677) [-4075.202] (-4071.342) (-4070.551) -- 0:06:09
605000 -- (-4069.103) (-4069.042) [-4064.575] (-4069.220) * (-4074.381) [-4078.487] (-4077.525) (-4078.520) -- 0:06:08
Average standard deviation of split frequencies: 0.007617
606000 -- [-4072.867] (-4064.475) (-4064.031) (-4074.981) * [-4062.530] (-4082.867) (-4072.906) (-4074.954) -- 0:06:07
607000 -- [-4061.321] (-4092.344) (-4075.416) (-4063.372) * (-4065.702) (-4080.374) (-4077.523) [-4067.120] -- 0:06:07
608000 -- (-4076.450) (-4069.328) [-4062.106] (-4090.306) * (-4069.470) [-4064.573] (-4069.811) (-4079.695) -- 0:06:06
609000 -- (-4076.002) [-4064.824] (-4072.742) (-4083.023) * (-4065.449) (-4074.882) (-4070.223) [-4067.801] -- 0:06:05
610000 -- (-4084.216) (-4066.121) [-4070.668] (-4082.862) * (-4069.069) [-4065.656] (-4070.495) (-4074.046) -- 0:06:03
Average standard deviation of split frequencies: 0.007494
611000 -- (-4061.698) (-4081.634) (-4068.212) [-4072.605] * (-4082.771) [-4063.185] (-4071.299) (-4061.667) -- 0:06:02
612000 -- (-4065.502) [-4077.830] (-4071.623) (-4076.969) * (-4076.241) (-4074.308) (-4075.485) [-4066.491] -- 0:06:02
613000 -- (-4064.936) (-4066.177) [-4071.765] (-4075.091) * [-4075.153] (-4068.877) (-4077.291) (-4082.747) -- 0:06:01
614000 -- (-4082.077) (-4069.718) [-4059.523] (-4079.743) * [-4061.226] (-4069.439) (-4072.093) (-4061.640) -- 0:06:00
615000 -- [-4071.731] (-4078.680) (-4078.901) (-4066.215) * [-4066.911] (-4066.838) (-4075.766) (-4083.004) -- 0:05:59
Average standard deviation of split frequencies: 0.006951
616000 -- (-4067.723) (-4085.836) [-4068.659] (-4075.523) * (-4070.786) [-4060.774] (-4081.083) (-4075.210) -- 0:05:58
617000 -- (-4067.824) (-4082.796) [-4065.090] (-4066.796) * (-4070.925) (-4067.452) [-4061.324] (-4090.819) -- 0:05:57
618000 -- [-4062.716] (-4088.060) (-4069.697) (-4078.150) * (-4079.635) (-4066.359) (-4076.842) [-4069.579] -- 0:05:56
619000 -- (-4081.818) [-4061.074] (-4078.012) (-4067.798) * [-4067.536] (-4075.231) (-4097.322) (-4061.909) -- 0:05:55
620000 -- [-4062.440] (-4075.751) (-4074.170) (-4067.173) * (-4078.160) (-4075.613) (-4074.665) [-4062.785] -- 0:05:54
Average standard deviation of split frequencies: 0.006931
621000 -- (-4076.002) (-4076.476) [-4076.903] (-4066.608) * (-4079.739) (-4072.111) [-4066.714] (-4062.091) -- 0:05:53
622000 -- (-4073.859) (-4068.209) [-4062.916] (-4065.087) * [-4070.195] (-4074.218) (-4075.102) (-4078.180) -- 0:05:53
623000 -- (-4078.751) (-4073.888) (-4064.806) [-4078.197] * [-4064.324] (-4068.906) (-4082.174) (-4070.723) -- 0:05:52
624000 -- (-4071.663) (-4068.683) [-4072.984] (-4068.999) * (-4074.556) [-4060.538] (-4089.704) (-4069.571) -- 0:05:51
625000 -- (-4063.760) [-4062.308] (-4071.575) (-4067.875) * (-4068.482) [-4063.344] (-4082.820) (-4070.563) -- 0:05:50
Average standard deviation of split frequencies: 0.006840
626000 -- [-4073.828] (-4078.204) (-4072.020) (-4062.907) * (-4069.748) (-4061.601) (-4082.256) [-4063.764] -- 0:05:48
627000 -- (-4068.572) [-4067.327] (-4074.137) (-4072.065) * (-4078.324) [-4058.464] (-4085.753) (-4070.504) -- 0:05:48
628000 -- (-4065.018) [-4072.133] (-4081.711) (-4067.342) * [-4069.319] (-4070.858) (-4087.329) (-4062.927) -- 0:05:47
629000 -- (-4071.136) (-4070.215) (-4061.721) [-4062.465] * (-4069.355) (-4079.530) (-4072.761) [-4063.934] -- 0:05:46
630000 -- (-4074.389) [-4067.163] (-4077.663) (-4063.605) * (-4073.546) (-4068.710) [-4067.111] (-4081.755) -- 0:05:45
Average standard deviation of split frequencies: 0.007039
631000 -- [-4070.606] (-4072.633) (-4075.163) (-4075.109) * (-4089.076) [-4064.644] (-4068.498) (-4062.352) -- 0:05:44
632000 -- (-4070.932) (-4065.284) (-4068.884) [-4076.575] * (-4071.698) (-4078.715) [-4060.512] (-4077.218) -- 0:05:43
633000 -- (-4074.144) [-4069.476] (-4066.491) (-4071.432) * (-4082.002) (-4070.002) [-4073.951] (-4073.489) -- 0:05:42
634000 -- (-4074.965) (-4076.300) (-4072.592) [-4070.956] * (-4062.513) (-4076.113) [-4081.089] (-4076.903) -- 0:05:41
635000 -- [-4070.481] (-4067.674) (-4067.609) (-4070.021) * (-4071.541) (-4073.007) [-4057.985] (-4063.362) -- 0:05:40
Average standard deviation of split frequencies: 0.007196
636000 -- (-4069.479) (-4073.541) (-4077.300) [-4071.237] * (-4086.045) (-4078.510) [-4065.339] (-4072.899) -- 0:05:39
637000 -- (-4073.537) [-4067.644] (-4074.085) (-4065.889) * (-4068.891) (-4068.087) (-4068.531) [-4068.335] -- 0:05:39
638000 -- (-4087.580) (-4069.465) [-4061.601] (-4072.439) * (-4083.006) (-4068.738) (-4062.624) [-4066.190] -- 0:05:37
639000 -- (-4068.146) [-4069.045] (-4063.183) (-4067.833) * [-4061.963] (-4068.071) (-4075.267) (-4066.130) -- 0:05:36
640000 -- (-4060.779) (-4069.365) [-4062.792] (-4081.514) * [-4065.905] (-4059.644) (-4082.312) (-4080.615) -- 0:05:35
Average standard deviation of split frequencies: 0.007205
641000 -- (-4077.640) (-4068.386) (-4078.489) [-4076.474] * (-4085.151) (-4071.396) [-4061.228] (-4062.336) -- 0:05:34
642000 -- (-4063.531) [-4064.798] (-4082.152) (-4073.066) * [-4076.388] (-4077.385) (-4070.149) (-4074.673) -- 0:05:34
643000 -- (-4076.025) (-4076.035) [-4065.126] (-4076.416) * [-4077.634] (-4069.937) (-4077.938) (-4065.232) -- 0:05:33
644000 -- (-4066.337) [-4067.215] (-4067.487) (-4075.210) * (-4085.660) (-4068.297) [-4060.871] (-4070.279) -- 0:05:32
645000 -- (-4063.703) [-4072.556] (-4066.278) (-4067.273) * (-4070.260) (-4068.884) [-4073.070] (-4071.308) -- 0:05:31
Average standard deviation of split frequencies: 0.007145
646000 -- (-4078.152) (-4069.456) [-4067.237] (-4070.476) * (-4071.265) [-4067.612] (-4065.327) (-4070.291) -- 0:05:30
647000 -- [-4072.376] (-4072.520) (-4069.648) (-4075.152) * (-4074.506) (-4062.797) (-4069.127) [-4067.462] -- 0:05:29
648000 -- (-4074.178) (-4083.617) (-4082.123) [-4071.380] * (-4080.459) (-4070.593) [-4065.364] (-4078.474) -- 0:05:28
649000 -- (-4071.524) (-4071.827) [-4070.942] (-4074.471) * (-4067.284) (-4075.724) [-4067.939] (-4071.951) -- 0:05:27
650000 -- (-4063.756) [-4065.751] (-4066.084) (-4079.947) * [-4081.031] (-4079.847) (-4071.540) (-4078.037) -- 0:05:26
Average standard deviation of split frequencies: 0.007215
651000 -- (-4087.142) (-4068.529) [-4080.154] (-4072.997) * (-4070.272) [-4072.931] (-4071.951) (-4058.656) -- 0:05:25
652000 -- (-4074.645) (-4072.301) (-4074.573) [-4077.249] * (-4070.438) (-4074.471) (-4078.315) [-4066.451] -- 0:05:24
653000 -- (-4064.155) [-4072.402] (-4061.777) (-4080.833) * (-4089.442) (-4068.721) [-4071.655] (-4080.657) -- 0:05:23
654000 -- (-4087.796) [-4070.454] (-4064.337) (-4078.857) * [-4072.825] (-4063.148) (-4079.848) (-4061.819) -- 0:05:22
655000 -- [-4069.943] (-4079.628) (-4078.158) (-4061.121) * (-4068.445) [-4064.117] (-4064.820) (-4074.515) -- 0:05:21
Average standard deviation of split frequencies: 0.006857
656000 -- [-4067.118] (-4072.185) (-4061.194) (-4069.377) * (-4090.733) (-4077.472) (-4070.129) [-4069.337] -- 0:05:20
657000 -- (-4075.350) [-4079.738] (-4076.729) (-4076.035) * (-4078.859) (-4073.438) (-4060.915) [-4061.907] -- 0:05:20
658000 -- (-4077.659) (-4077.405) [-4075.988] (-4075.390) * (-4090.587) [-4072.637] (-4065.652) (-4074.605) -- 0:05:19
659000 -- (-4070.127) (-4079.831) (-4066.302) [-4069.030] * (-4069.471) [-4085.126] (-4076.484) (-4068.916) -- 0:05:18
660000 -- (-4075.413) [-4062.162] (-4089.879) (-4069.864) * [-4071.728] (-4060.514) (-4074.931) (-4071.153) -- 0:05:17
Average standard deviation of split frequencies: 0.006897
661000 -- [-4069.741] (-4072.059) (-4078.972) (-4069.025) * (-4079.072) [-4073.360] (-4074.904) (-4067.320) -- 0:05:16
662000 -- (-4078.554) (-4073.328) (-4078.368) [-4068.649] * (-4064.994) (-4077.844) (-4068.180) [-4073.675] -- 0:05:15
663000 -- (-4074.983) (-4077.784) [-4066.731] (-4066.406) * (-4070.342) [-4071.871] (-4074.838) (-4088.925) -- 0:05:14
664000 -- (-4073.146) (-4071.433) (-4079.763) [-4064.398] * [-4070.769] (-4073.330) (-4071.510) (-4071.947) -- 0:05:13
665000 -- [-4061.848] (-4069.112) (-4079.372) (-4059.769) * [-4066.851] (-4073.848) (-4075.764) (-4070.475) -- 0:05:12
Average standard deviation of split frequencies: 0.006606
666000 -- (-4082.671) [-4068.806] (-4076.881) (-4066.197) * (-4072.842) (-4071.747) (-4070.617) [-4063.592] -- 0:05:11
667000 -- (-4075.560) (-4057.949) (-4066.930) [-4062.005] * (-4064.557) [-4062.195] (-4083.121) (-4071.773) -- 0:05:10
668000 -- (-4080.342) [-4054.742] (-4077.031) (-4074.872) * (-4068.702) [-4071.453] (-4071.304) (-4067.749) -- 0:05:09
669000 -- (-4072.998) (-4068.491) [-4068.592] (-4066.355) * (-4072.561) (-4079.645) (-4073.010) [-4069.996] -- 0:05:08
670000 -- [-4065.424] (-4072.577) (-4064.216) (-4077.595) * (-4066.526) [-4065.614] (-4082.503) (-4065.403) -- 0:05:07
Average standard deviation of split frequencies: 0.006355
671000 -- (-4063.088) (-4077.364) [-4066.302] (-4074.284) * (-4077.639) (-4091.158) (-4078.688) [-4059.968] -- 0:05:06
672000 -- (-4072.108) [-4065.269] (-4066.911) (-4061.535) * (-4079.184) [-4066.203] (-4071.501) (-4067.961) -- 0:05:06
673000 -- (-4072.334) (-4060.436) [-4069.462] (-4072.615) * (-4074.400) [-4069.827] (-4069.017) (-4066.873) -- 0:05:05
674000 -- (-4084.936) [-4067.430] (-4075.453) (-4067.956) * [-4070.814] (-4079.709) (-4067.582) (-4074.635) -- 0:05:03
675000 -- (-4075.846) [-4085.236] (-4072.724) (-4069.524) * (-4072.928) (-4066.461) [-4064.953] (-4077.062) -- 0:05:02
Average standard deviation of split frequencies: 0.006392
676000 -- (-4071.781) (-4075.665) (-4071.682) [-4064.531] * (-4075.303) (-4071.316) [-4067.507] (-4080.501) -- 0:05:01
677000 -- (-4062.643) (-4069.922) [-4062.542] (-4074.170) * (-4069.954) (-4070.197) [-4068.792] (-4062.829) -- 0:05:01
678000 -- (-4066.206) (-4078.772) (-4071.407) [-4070.178] * [-4064.471] (-4067.972) (-4080.965) (-4080.378) -- 0:05:00
679000 -- (-4070.599) [-4062.551] (-4069.331) (-4072.227) * [-4066.157] (-4073.035) (-4084.212) (-4076.341) -- 0:04:59
680000 -- (-4076.385) (-4070.144) [-4066.274] (-4076.482) * [-4077.687] (-4061.407) (-4070.526) (-4075.253) -- 0:04:58
Average standard deviation of split frequencies: 0.006435
681000 -- (-4078.329) [-4062.384] (-4066.220) (-4071.423) * (-4068.866) (-4068.793) [-4071.169] (-4079.645) -- 0:04:57
682000 -- (-4080.412) (-4080.649) (-4067.402) [-4066.263] * (-4069.170) [-4072.285] (-4084.140) (-4072.149) -- 0:04:56
683000 -- (-4070.578) (-4076.398) [-4072.174] (-4075.941) * (-4068.624) (-4066.992) [-4068.687] (-4061.732) -- 0:04:55
684000 -- (-4070.802) (-4074.951) (-4071.205) [-4064.229] * (-4073.958) (-4060.249) [-4064.466] (-4082.045) -- 0:04:54
685000 -- (-4068.635) [-4064.109] (-4063.861) (-4062.309) * (-4073.513) (-4075.566) (-4065.774) [-4073.565] -- 0:04:53
Average standard deviation of split frequencies: 0.007072
686000 -- (-4060.705) [-4066.839] (-4074.689) (-4087.731) * (-4074.022) (-4070.151) [-4068.540] (-4062.905) -- 0:04:52
687000 -- (-4066.486) [-4071.342] (-4088.518) (-4067.471) * (-4072.074) (-4067.229) [-4066.044] (-4069.797) -- 0:04:51
688000 -- (-4079.743) (-4060.157) [-4066.087] (-4064.958) * (-4073.423) (-4081.830) [-4069.869] (-4078.578) -- 0:04:50
689000 -- (-4070.662) (-4083.054) (-4063.253) [-4067.688] * (-4074.308) [-4061.984] (-4071.089) (-4071.509) -- 0:04:49
690000 -- (-4061.851) [-4070.542] (-4069.539) (-4068.414) * [-4072.488] (-4070.663) (-4072.406) (-4077.030) -- 0:04:48
Average standard deviation of split frequencies: 0.006882
691000 -- [-4067.481] (-4079.872) (-4069.094) (-4067.561) * [-4061.498] (-4076.057) (-4070.658) (-4081.141) -- 0:04:47
692000 -- (-4069.794) (-4082.689) [-4062.178] (-4068.656) * (-4066.303) (-4072.364) (-4073.659) [-4075.654] -- 0:04:47
693000 -- (-4080.650) [-4089.463] (-4071.657) (-4080.590) * (-4096.376) [-4077.180] (-4068.745) (-4069.964) -- 0:04:46
694000 -- (-4079.256) (-4073.004) [-4067.214] (-4075.267) * (-4070.637) (-4075.398) [-4069.981] (-4062.485) -- 0:04:45
695000 -- (-4085.253) [-4072.629] (-4061.066) (-4076.232) * (-4086.614) (-4073.805) [-4062.803] (-4077.700) -- 0:04:44
Average standard deviation of split frequencies: 0.006829
696000 -- (-4071.896) (-4060.787) [-4067.280] (-4077.202) * (-4078.580) [-4064.585] (-4071.878) (-4078.432) -- 0:04:43
697000 -- (-4067.499) [-4065.536] (-4069.851) (-4068.527) * (-4071.001) (-4063.936) (-4073.379) [-4058.017] -- 0:04:42
698000 -- (-4065.039) (-4074.166) [-4072.330] (-4074.897) * (-4067.100) (-4068.606) (-4067.510) [-4060.732] -- 0:04:41
699000 -- (-4072.340) (-4078.437) [-4066.609] (-4063.520) * [-4072.466] (-4060.211) (-4081.512) (-4071.754) -- 0:04:40
700000 -- (-4079.836) [-4069.943] (-4067.348) (-4070.317) * (-4074.442) [-4068.851] (-4083.217) (-4086.431) -- 0:04:39
Average standard deviation of split frequencies: 0.006672
701000 -- (-4085.622) (-4071.139) (-4063.575) [-4060.195] * [-4061.713] (-4070.658) (-4083.839) (-4070.479) -- 0:04:38
702000 -- (-4075.698) [-4070.246] (-4083.141) (-4072.000) * [-4065.991] (-4074.755) (-4074.688) (-4069.079) -- 0:04:37
703000 -- (-4061.231) [-4059.298] (-4073.737) (-4073.402) * (-4072.726) (-4075.910) (-4072.748) [-4064.462] -- 0:04:36
704000 -- (-4074.956) [-4066.589] (-4079.309) (-4068.675) * [-4070.877] (-4071.729) (-4070.760) (-4073.411) -- 0:04:35
705000 -- (-4075.730) [-4065.407] (-4073.889) (-4075.103) * (-4062.434) (-4072.977) [-4071.418] (-4071.980) -- 0:04:34
Average standard deviation of split frequencies: 0.006371
706000 -- (-4062.972) (-4077.526) [-4064.278] (-4078.095) * (-4070.157) (-4073.269) (-4080.618) [-4063.755] -- 0:04:34
707000 -- (-4065.975) [-4074.026] (-4075.282) (-4071.918) * [-4061.157] (-4067.766) (-4083.822) (-4074.874) -- 0:04:33
708000 -- [-4062.186] (-4071.575) (-4059.848) (-4061.348) * [-4071.872] (-4073.288) (-4070.819) (-4084.850) -- 0:04:32
709000 -- [-4075.185] (-4072.062) (-4061.949) (-4060.469) * (-4065.039) [-4070.683] (-4065.509) (-4072.608) -- 0:04:30
710000 -- (-4068.038) [-4069.483] (-4064.594) (-4076.964) * (-4065.286) (-4071.946) (-4062.502) [-4067.482] -- 0:04:29
Average standard deviation of split frequencies: 0.006606
711000 -- (-4073.789) (-4077.148) [-4059.232] (-4069.751) * (-4076.929) (-4072.798) (-4064.682) [-4070.670] -- 0:04:29
712000 -- (-4068.108) (-4065.490) [-4077.020] (-4074.656) * (-4075.845) (-4059.863) (-4059.822) [-4070.360] -- 0:04:28
713000 -- (-4074.819) (-4069.660) [-4068.341] (-4066.466) * (-4066.368) [-4065.338] (-4062.521) (-4071.301) -- 0:04:27
714000 -- [-4080.097] (-4088.428) (-4076.347) (-4066.521) * (-4065.842) [-4067.019] (-4074.223) (-4077.000) -- 0:04:26
715000 -- (-4066.809) (-4076.670) [-4072.064] (-4064.906) * (-4083.521) [-4080.745] (-4069.817) (-4066.307) -- 0:04:25
Average standard deviation of split frequencies: 0.006968
716000 -- [-4068.457] (-4067.920) (-4079.233) (-4070.159) * (-4070.737) (-4071.040) [-4070.572] (-4078.622) -- 0:04:24
717000 -- (-4081.884) [-4067.288] (-4083.459) (-4069.674) * (-4074.561) (-4066.989) [-4070.207] (-4074.192) -- 0:04:23
718000 -- (-4079.455) (-4064.064) (-4078.959) [-4070.829] * (-4072.894) (-4075.774) (-4071.439) [-4068.245] -- 0:04:22
719000 -- (-4074.463) (-4067.283) (-4067.928) [-4075.095] * (-4082.284) [-4067.024] (-4069.574) (-4075.349) -- 0:04:21
720000 -- (-4083.232) (-4072.975) [-4069.404] (-4081.509) * (-4069.476) [-4068.742] (-4075.480) (-4062.711) -- 0:04:20
Average standard deviation of split frequencies: 0.007168
721000 -- (-4071.110) (-4075.874) (-4065.195) [-4069.217] * [-4064.842] (-4061.592) (-4069.786) (-4071.149) -- 0:04:19
722000 -- [-4071.544] (-4062.303) (-4074.977) (-4070.285) * [-4065.266] (-4069.154) (-4063.334) (-4082.999) -- 0:04:18
723000 -- (-4076.440) (-4067.907) [-4062.249] (-4071.130) * [-4077.355] (-4088.229) (-4073.727) (-4072.342) -- 0:04:17
724000 -- (-4073.630) (-4074.015) [-4066.992] (-4068.185) * (-4090.453) (-4079.284) (-4083.245) [-4065.403] -- 0:04:16
725000 -- (-4067.662) (-4065.464) [-4072.716] (-4081.704) * (-4080.511) (-4074.459) [-4067.855] (-4080.380) -- 0:04:16
Average standard deviation of split frequencies: 0.007115
726000 -- (-4072.318) [-4071.291] (-4081.795) (-4072.471) * [-4070.276] (-4070.846) (-4067.681) (-4070.834) -- 0:04:15
727000 -- (-4073.319) (-4068.515) [-4062.640] (-4084.522) * [-4070.185] (-4065.377) (-4070.332) (-4073.455) -- 0:04:14
728000 -- [-4069.512] (-4068.616) (-4071.263) (-4073.156) * [-4068.611] (-4087.526) (-4069.135) (-4062.655) -- 0:04:13
729000 -- (-4068.380) [-4070.139] (-4077.380) (-4066.433) * (-4074.966) (-4084.330) (-4075.347) [-4069.069] -- 0:04:12
730000 -- (-4070.101) [-4064.867] (-4061.106) (-4077.243) * (-4075.976) [-4064.996] (-4066.721) (-4058.654) -- 0:04:11
Average standard deviation of split frequencies: 0.007823
731000 -- (-4065.761) (-4072.087) [-4061.800] (-4073.321) * (-4064.467) (-4062.499) [-4063.965] (-4072.035) -- 0:04:10
732000 -- (-4077.509) (-4076.259) [-4069.986] (-4078.752) * (-4067.604) (-4073.257) (-4060.111) [-4074.239] -- 0:04:09
733000 -- (-4082.262) (-4069.573) (-4075.855) [-4077.354] * (-4070.856) (-4081.330) [-4060.480] (-4069.713) -- 0:04:08
734000 -- [-4066.075] (-4075.135) (-4068.231) (-4066.139) * (-4086.005) (-4068.464) [-4069.185] (-4077.599) -- 0:04:07
735000 -- [-4066.979] (-4077.214) (-4075.581) (-4076.522) * (-4063.082) (-4069.992) [-4070.837] (-4071.929) -- 0:04:06
Average standard deviation of split frequencies: 0.008006
736000 -- (-4069.385) (-4062.413) [-4052.972] (-4076.518) * (-4067.463) (-4066.286) [-4072.283] (-4071.398) -- 0:04:05
737000 -- (-4086.722) [-4068.373] (-4064.829) (-4070.341) * (-4074.966) (-4082.118) (-4058.002) [-4074.562] -- 0:04:04
738000 -- (-4076.783) (-4066.400) [-4067.489] (-4077.940) * [-4068.621] (-4075.633) (-4083.453) (-4073.753) -- 0:04:03
739000 -- (-4070.325) (-4059.455) (-4077.098) [-4062.997] * (-4069.600) (-4069.124) [-4081.352] (-4070.074) -- 0:04:02
740000 -- (-4062.005) (-4069.154) (-4085.642) [-4063.698] * (-4077.801) (-4079.632) [-4064.530] (-4084.597) -- 0:04:02
Average standard deviation of split frequencies: 0.007399
741000 -- (-4079.088) (-4075.291) (-4069.336) [-4066.692] * (-4062.995) (-4077.986) [-4080.078] (-4085.404) -- 0:04:01
742000 -- (-4076.913) (-4058.586) [-4068.372] (-4064.017) * (-4081.751) [-4070.365] (-4069.283) (-4079.359) -- 0:04:00
743000 -- (-4076.656) (-4069.332) [-4069.980] (-4061.829) * (-4060.822) (-4072.645) [-4064.304] (-4081.043) -- 0:03:59
744000 -- (-4064.607) (-4071.074) (-4079.356) [-4063.157] * (-4078.398) (-4070.431) (-4059.453) [-4068.255] -- 0:03:58
745000 -- (-4068.929) [-4066.570] (-4067.235) (-4061.928) * [-4061.599] (-4068.981) (-4071.758) (-4074.307) -- 0:03:57
Average standard deviation of split frequencies: 0.007557
746000 -- [-4066.276] (-4075.732) (-4071.330) (-4064.961) * [-4072.065] (-4078.019) (-4080.118) (-4076.118) -- 0:03:56
747000 -- (-4085.448) [-4067.896] (-4069.177) (-4067.601) * [-4073.323] (-4065.408) (-4073.279) (-4072.262) -- 0:03:55
748000 -- (-4069.863) (-4077.243) (-4080.015) [-4067.380] * (-4070.556) (-4067.395) [-4066.185] (-4078.258) -- 0:03:54
749000 -- (-4080.765) [-4067.429] (-4070.160) (-4073.856) * (-4081.123) [-4071.641] (-4075.660) (-4061.783) -- 0:03:53
750000 -- (-4069.071) [-4063.746] (-4073.386) (-4077.723) * (-4083.942) (-4083.250) (-4072.022) [-4062.009] -- 0:03:52
Average standard deviation of split frequencies: 0.007222
751000 -- (-4066.806) [-4068.003] (-4075.417) (-4076.257) * (-4072.574) (-4073.232) [-4068.167] (-4059.582) -- 0:03:51
752000 -- (-4066.810) [-4060.056] (-4072.083) (-4067.768) * (-4069.377) (-4069.068) [-4070.113] (-4074.440) -- 0:03:50
753000 -- [-4068.573] (-4085.365) (-4074.909) (-4077.244) * (-4072.930) (-4069.832) (-4077.705) [-4060.251] -- 0:03:49
754000 -- (-4065.650) [-4064.105] (-4081.653) (-4086.921) * (-4072.126) (-4065.016) (-4069.196) [-4071.686] -- 0:03:49
755000 -- (-4070.604) (-4069.159) (-4076.976) [-4082.457] * (-4071.467) [-4067.856] (-4076.081) (-4077.526) -- 0:03:48
Average standard deviation of split frequencies: 0.006989
756000 -- [-4070.019] (-4075.687) (-4081.518) (-4072.012) * (-4088.469) (-4068.593) (-4084.529) [-4076.371] -- 0:03:47
757000 -- [-4061.371] (-4095.472) (-4072.885) (-4069.028) * [-4066.960] (-4071.356) (-4074.461) (-4072.899) -- 0:03:46
758000 -- (-4083.554) (-4075.250) [-4070.142] (-4063.450) * (-4080.107) [-4058.362] (-4068.365) (-4072.037) -- 0:03:45
759000 -- (-4063.523) [-4067.734] (-4081.484) (-4071.768) * (-4076.629) (-4069.674) (-4072.170) [-4064.703] -- 0:03:44
760000 -- [-4069.701] (-4079.654) (-4071.733) (-4072.076) * (-4063.696) (-4066.506) [-4078.395] (-4079.056) -- 0:03:43
Average standard deviation of split frequencies: 0.006972
761000 -- [-4067.545] (-4075.360) (-4069.768) (-4056.914) * [-4062.980] (-4074.326) (-4071.405) (-4072.975) -- 0:03:42
762000 -- [-4056.356] (-4061.489) (-4074.253) (-4065.492) * (-4079.232) (-4070.907) [-4070.132] (-4073.524) -- 0:03:41
763000 -- [-4067.533] (-4066.242) (-4078.777) (-4079.812) * [-4068.437] (-4073.024) (-4070.492) (-4089.810) -- 0:03:40
764000 -- (-4075.214) (-4069.449) [-4064.142] (-4070.830) * (-4083.943) [-4083.450] (-4073.128) (-4066.366) -- 0:03:39
765000 -- (-4067.982) (-4065.348) (-4079.707) [-4064.550] * (-4066.175) (-4082.148) (-4081.880) [-4071.089] -- 0:03:38
Average standard deviation of split frequencies: 0.007129
766000 -- (-4071.618) (-4078.356) (-4068.493) [-4058.122] * (-4079.158) (-4060.277) (-4068.989) [-4066.718] -- 0:03:37
767000 -- (-4076.158) (-4076.259) (-4074.363) [-4071.405] * (-4066.895) [-4064.036] (-4074.113) (-4075.700) -- 0:03:36
768000 -- [-4056.739] (-4074.410) (-4073.289) (-4064.581) * (-4067.375) (-4074.685) [-4067.566] (-4067.851) -- 0:03:35
769000 -- [-4078.845] (-4092.617) (-4061.442) (-4066.511) * [-4070.326] (-4081.794) (-4081.988) (-4059.334) -- 0:03:35
770000 -- [-4076.357] (-4079.636) (-4066.844) (-4072.483) * (-4077.884) [-4065.888] (-4071.619) (-4069.094) -- 0:03:34
Average standard deviation of split frequencies: 0.006907
771000 -- (-4065.368) (-4078.578) [-4070.550] (-4085.193) * [-4072.004] (-4064.372) (-4076.695) (-4077.898) -- 0:03:33
772000 -- (-4075.203) [-4065.083] (-4080.846) (-4074.831) * (-4078.306) (-4082.172) [-4064.949] (-4068.283) -- 0:03:32
773000 -- (-4070.678) (-4061.932) (-4070.587) [-4070.392] * (-4070.892) [-4073.060] (-4076.878) (-4082.705) -- 0:03:31
774000 -- [-4068.837] (-4074.273) (-4078.455) (-4071.871) * (-4077.745) (-4070.637) (-4066.495) [-4076.720] -- 0:03:30
775000 -- [-4067.315] (-4072.091) (-4070.416) (-4073.116) * (-4067.646) (-4065.301) [-4064.513] (-4065.823) -- 0:03:29
Average standard deviation of split frequencies: 0.006606
776000 -- (-4066.920) [-4068.029] (-4067.293) (-4068.453) * (-4076.202) (-4078.209) (-4066.093) [-4071.128] -- 0:03:28
777000 -- [-4072.437] (-4067.530) (-4068.251) (-4076.954) * (-4072.446) (-4079.471) (-4067.459) [-4070.650] -- 0:03:27
778000 -- (-4073.931) [-4070.517] (-4072.826) (-4073.286) * (-4062.742) (-4084.735) (-4078.378) [-4070.659] -- 0:03:26
779000 -- (-4076.541) [-4060.515] (-4091.364) (-4073.064) * (-4080.785) (-4091.208) (-4074.331) [-4071.227] -- 0:03:25
780000 -- (-4067.138) (-4067.598) (-4078.964) [-4067.340] * (-4075.460) (-4070.580) [-4078.565] (-4068.353) -- 0:03:25
Average standard deviation of split frequencies: 0.006340
781000 -- (-4062.109) [-4077.655] (-4066.581) (-4068.162) * [-4073.905] (-4080.275) (-4073.737) (-4062.692) -- 0:03:24
782000 -- (-4067.175) [-4066.399] (-4069.159) (-4081.990) * (-4071.597) (-4070.167) (-4076.973) [-4066.327] -- 0:03:23
783000 -- [-4066.777] (-4076.763) (-4074.384) (-4069.009) * (-4072.693) [-4071.336] (-4081.309) (-4070.467) -- 0:03:22
784000 -- (-4070.258) (-4066.300) (-4076.739) [-4061.169] * (-4080.050) (-4072.389) [-4075.610] (-4068.502) -- 0:03:21
785000 -- [-4060.165] (-4072.782) (-4071.867) (-4072.485) * (-4065.110) (-4072.092) (-4078.753) [-4067.387] -- 0:03:20
Average standard deviation of split frequencies: 0.006047
786000 -- [-4072.266] (-4071.008) (-4070.524) (-4063.973) * (-4068.895) (-4066.440) (-4081.926) [-4066.857] -- 0:03:19
787000 -- (-4072.757) (-4074.778) [-4070.880] (-4070.583) * (-4079.489) (-4083.045) (-4074.290) [-4066.627] -- 0:03:18
788000 -- (-4070.070) [-4071.398] (-4076.306) (-4078.727) * (-4069.575) [-4068.965] (-4077.695) (-4074.679) -- 0:03:17
789000 -- (-4070.828) (-4073.430) (-4080.952) [-4064.724] * (-4077.305) (-4066.637) (-4066.314) [-4072.669] -- 0:03:16
790000 -- (-4083.168) (-4076.529) (-4087.709) [-4065.150] * [-4066.895] (-4062.370) (-4062.806) (-4087.109) -- 0:03:15
Average standard deviation of split frequencies: 0.005888
791000 -- (-4063.417) (-4075.443) (-4071.173) [-4065.745] * (-4079.807) [-4067.502] (-4066.460) (-4074.913) -- 0:03:14
792000 -- [-4071.136] (-4065.367) (-4083.395) (-4068.010) * (-4069.615) [-4066.464] (-4070.440) (-4071.052) -- 0:03:13
793000 -- (-4065.940) [-4059.854] (-4088.378) (-4065.520) * (-4064.690) (-4065.918) [-4071.634] (-4066.174) -- 0:03:12
794000 -- (-4065.997) [-4070.775] (-4073.020) (-4069.552) * (-4079.065) (-4068.669) (-4071.117) [-4059.856] -- 0:03:11
795000 -- [-4061.790] (-4076.519) (-4069.819) (-4073.829) * (-4075.742) (-4075.170) [-4066.267] (-4075.300) -- 0:03:11
Average standard deviation of split frequencies: 0.006070
796000 -- [-4071.028] (-4078.470) (-4067.610) (-4075.376) * (-4074.413) [-4068.775] (-4075.128) (-4080.459) -- 0:03:10
797000 -- [-4072.214] (-4083.036) (-4064.628) (-4075.358) * [-4059.243] (-4077.011) (-4069.913) (-4081.879) -- 0:03:09
798000 -- [-4064.694] (-4073.478) (-4066.242) (-4075.188) * (-4071.567) (-4083.551) [-4066.015] (-4068.130) -- 0:03:08
799000 -- (-4068.994) (-4070.970) (-4066.693) [-4076.155] * (-4065.023) (-4071.093) [-4068.778] (-4068.810) -- 0:03:07
800000 -- (-4087.186) [-4073.898] (-4063.052) (-4084.284) * (-4071.447) [-4072.434] (-4075.089) (-4075.071) -- 0:03:06
Average standard deviation of split frequencies: 0.005937
801000 -- [-4060.170] (-4070.164) (-4071.283) (-4071.758) * (-4074.116) [-4065.853] (-4079.651) (-4076.343) -- 0:03:05
802000 -- [-4073.819] (-4071.845) (-4080.746) (-4077.224) * [-4064.003] (-4087.356) (-4068.852) (-4070.422) -- 0:03:04
803000 -- (-4064.803) (-4074.294) [-4071.036] (-4081.898) * [-4063.597] (-4085.581) (-4074.111) (-4075.994) -- 0:03:03
804000 -- (-4063.332) (-4077.404) [-4073.870] (-4070.032) * (-4074.373) [-4067.823] (-4070.507) (-4079.900) -- 0:03:02
805000 -- [-4065.727] (-4078.228) (-4069.707) (-4065.681) * (-4070.924) (-4072.747) (-4068.143) [-4062.352] -- 0:03:01
Average standard deviation of split frequencies: 0.005995
806000 -- (-4081.315) (-4068.056) [-4060.636] (-4079.815) * (-4073.451) [-4066.439] (-4074.734) (-4064.751) -- 0:03:00
807000 -- (-4070.194) [-4078.028] (-4075.454) (-4076.155) * (-4068.416) (-4064.385) [-4070.837] (-4067.206) -- 0:02:59
808000 -- (-4067.724) [-4060.569] (-4077.995) (-4067.558) * (-4075.971) (-4073.089) (-4073.796) [-4077.628] -- 0:02:58
809000 -- (-4070.619) [-4058.078] (-4072.398) (-4071.279) * (-4068.347) (-4070.009) [-4075.615] (-4085.266) -- 0:02:58
810000 -- (-4075.137) (-4074.464) (-4073.597) [-4073.007] * (-4078.115) (-4079.676) [-4074.388] (-4072.727) -- 0:02:57
Average standard deviation of split frequencies: 0.005791
811000 -- [-4062.070] (-4069.612) (-4069.751) (-4071.392) * [-4065.532] (-4079.203) (-4068.931) (-4067.492) -- 0:02:56
812000 -- (-4081.859) (-4074.155) [-4066.350] (-4078.839) * (-4082.502) (-4069.835) (-4072.708) [-4066.099] -- 0:02:55
813000 -- (-4077.989) (-4069.570) [-4073.857] (-4076.574) * (-4074.688) (-4075.144) (-4068.636) [-4064.818] -- 0:02:54
814000 -- (-4069.399) (-4066.233) (-4074.809) [-4069.417] * (-4073.256) (-4081.394) [-4073.928] (-4066.329) -- 0:02:53
815000 -- [-4070.362] (-4089.789) (-4080.765) (-4080.011) * [-4071.086] (-4075.299) (-4065.163) (-4074.495) -- 0:02:52
Average standard deviation of split frequencies: 0.005753
816000 -- [-4069.447] (-4080.627) (-4079.163) (-4075.722) * (-4082.474) (-4070.019) [-4064.233] (-4069.861) -- 0:02:51
817000 -- [-4071.593] (-4079.418) (-4081.638) (-4072.377) * (-4077.979) [-4066.081] (-4066.577) (-4065.965) -- 0:02:50
818000 -- (-4068.944) [-4066.333] (-4077.087) (-4063.885) * [-4071.941] (-4067.503) (-4074.339) (-4070.085) -- 0:02:49
819000 -- (-4055.328) [-4076.609] (-4081.756) (-4090.672) * (-4075.267) (-4069.361) [-4066.249] (-4071.047) -- 0:02:48
820000 -- (-4069.746) [-4077.498] (-4069.971) (-4070.498) * (-4070.705) (-4073.135) [-4062.765] (-4066.770) -- 0:02:47
Average standard deviation of split frequencies: 0.006175
821000 -- (-4075.516) [-4064.752] (-4065.297) (-4083.028) * (-4072.819) [-4065.726] (-4079.812) (-4080.761) -- 0:02:46
822000 -- (-4076.049) (-4074.498) [-4072.660] (-4080.842) * (-4072.866) (-4072.464) (-4082.940) [-4058.320] -- 0:02:45
823000 -- (-4072.221) (-4062.284) [-4072.579] (-4068.810) * (-4068.675) [-4066.060] (-4086.902) (-4065.026) -- 0:02:44
824000 -- [-4069.384] (-4062.039) (-4077.604) (-4069.366) * (-4072.904) (-4072.491) [-4078.115] (-4083.684) -- 0:02:44
825000 -- (-4066.627) [-4067.992] (-4078.001) (-4081.792) * (-4073.472) [-4073.870] (-4073.240) (-4082.508) -- 0:02:43
Average standard deviation of split frequencies: 0.005660
826000 -- [-4070.732] (-4059.221) (-4064.062) (-4063.486) * [-4074.304] (-4078.530) (-4072.662) (-4073.142) -- 0:02:42
827000 -- (-4077.225) (-4068.261) [-4066.745] (-4072.508) * (-4068.982) [-4067.540] (-4075.749) (-4067.915) -- 0:02:41
828000 -- (-4080.373) [-4069.782] (-4065.261) (-4080.535) * (-4074.954) (-4074.667) [-4063.260] (-4074.484) -- 0:02:40
829000 -- (-4077.544) (-4075.385) (-4083.580) [-4065.502] * (-4086.319) [-4072.794] (-4073.366) (-4069.010) -- 0:02:39
830000 -- [-4066.546] (-4076.361) (-4081.047) (-4069.475) * (-4079.196) (-4072.917) [-4057.825] (-4073.875) -- 0:02:38
Average standard deviation of split frequencies: 0.005604
831000 -- (-4071.978) (-4079.914) (-4079.740) [-4061.665] * (-4072.314) (-4077.572) [-4076.994] (-4070.677) -- 0:02:37
832000 -- (-4074.236) (-4072.119) (-4069.414) [-4068.948] * (-4075.826) [-4061.291] (-4066.371) (-4061.933) -- 0:02:36
833000 -- (-4065.479) (-4072.052) [-4064.621] (-4069.356) * (-4093.347) (-4061.217) [-4060.614] (-4066.777) -- 0:02:35
834000 -- [-4067.952] (-4079.983) (-4071.207) (-4067.619) * [-4079.453] (-4069.747) (-4061.213) (-4062.342) -- 0:02:34
835000 -- [-4064.708] (-4066.313) (-4076.013) (-4081.682) * (-4073.872) (-4072.263) (-4065.676) [-4065.008] -- 0:02:33
Average standard deviation of split frequencies: 0.005404
836000 -- (-4071.415) (-4083.996) (-4075.933) [-4063.000] * [-4074.984] (-4071.309) (-4067.564) (-4074.563) -- 0:02:32
837000 -- (-4080.565) (-4073.694) [-4073.035] (-4068.058) * (-4061.180) (-4073.365) (-4081.613) [-4070.289] -- 0:02:31
838000 -- (-4076.006) (-4077.893) [-4071.501] (-4090.067) * (-4073.052) [-4069.219] (-4074.857) (-4082.475) -- 0:02:30
839000 -- (-4076.690) [-4065.615] (-4072.943) (-4076.673) * [-4061.219] (-4067.865) (-4081.532) (-4075.862) -- 0:02:30
840000 -- (-4069.782) [-4067.608] (-4069.712) (-4077.696) * [-4063.856] (-4071.473) (-4069.660) (-4071.679) -- 0:02:29
Average standard deviation of split frequencies: 0.005491
841000 -- [-4062.766] (-4068.355) (-4069.908) (-4076.766) * (-4068.989) (-4057.639) [-4074.018] (-4084.477) -- 0:02:28
842000 -- (-4086.774) [-4065.893] (-4069.626) (-4069.846) * (-4076.924) (-4076.328) (-4075.626) [-4069.574] -- 0:02:27
843000 -- (-4080.051) [-4067.295] (-4076.493) (-4076.093) * (-4075.425) (-4062.524) [-4061.958] (-4067.273) -- 0:02:26
844000 -- (-4071.087) (-4084.521) [-4069.715] (-4069.287) * (-4065.327) (-4065.349) (-4076.623) [-4066.270] -- 0:02:25
845000 -- (-4080.372) (-4078.989) (-4071.170) [-4065.956] * (-4069.219) (-4085.370) [-4070.533] (-4070.543) -- 0:02:24
Average standard deviation of split frequencies: 0.005758
846000 -- (-4078.479) (-4070.025) [-4064.899] (-4076.800) * (-4076.331) (-4067.937) [-4072.049] (-4073.336) -- 0:02:23
847000 -- [-4061.990] (-4070.852) (-4069.165) (-4071.614) * (-4064.817) (-4070.921) [-4064.365] (-4071.438) -- 0:02:22
848000 -- (-4068.271) [-4070.630] (-4074.912) (-4075.505) * (-4073.075) (-4063.738) (-4065.860) [-4066.146] -- 0:02:21
849000 -- (-4066.414) (-4066.555) (-4068.018) [-4063.592] * [-4069.726] (-4069.557) (-4077.238) (-4086.541) -- 0:02:20
850000 -- (-4065.560) [-4063.549] (-4065.671) (-4076.229) * (-4078.566) (-4075.512) (-4065.448) [-4089.610] -- 0:02:19
Average standard deviation of split frequencies: 0.005796
851000 -- (-4076.577) (-4073.556) (-4069.110) [-4074.512] * [-4063.811] (-4077.187) (-4074.148) (-4067.083) -- 0:02:18
852000 -- [-4061.143] (-4071.036) (-4068.063) (-4077.655) * (-4067.389) [-4065.049] (-4081.834) (-4075.009) -- 0:02:17
853000 -- [-4073.646] (-4068.787) (-4078.106) (-4088.144) * (-4075.313) [-4065.800] (-4068.791) (-4085.205) -- 0:02:17
854000 -- (-4070.322) (-4074.855) [-4071.890] (-4081.542) * (-4072.008) (-4064.065) (-4071.700) [-4078.367] -- 0:02:16
855000 -- (-4089.399) [-4070.239] (-4068.092) (-4075.125) * [-4070.226] (-4068.599) (-4064.775) (-4073.878) -- 0:02:15
Average standard deviation of split frequencies: 0.005553
856000 -- [-4064.857] (-4085.527) (-4079.978) (-4080.943) * (-4071.181) (-4068.448) [-4059.936] (-4090.477) -- 0:02:14
857000 -- (-4078.985) (-4078.695) (-4060.367) [-4061.921] * (-4059.414) [-4062.983] (-4074.462) (-4079.955) -- 0:02:13
858000 -- (-4074.001) (-4074.107) (-4061.670) [-4070.511] * [-4073.008] (-4074.446) (-4065.650) (-4071.382) -- 0:02:12
859000 -- [-4080.015] (-4064.599) (-4066.699) (-4076.208) * [-4062.365] (-4077.724) (-4069.754) (-4071.099) -- 0:02:11
860000 -- (-4071.552) [-4067.970] (-4071.028) (-4084.072) * (-4062.110) [-4065.160] (-4073.249) (-4078.516) -- 0:02:10
Average standard deviation of split frequencies: 0.005728
861000 -- (-4071.159) (-4082.739) (-4081.117) [-4065.716] * (-4077.285) [-4062.028] (-4072.481) (-4065.278) -- 0:02:09
862000 -- (-4071.507) (-4063.198) (-4072.704) [-4059.186] * (-4075.267) (-4063.826) (-4076.973) [-4066.832] -- 0:02:08
863000 -- [-4066.462] (-4070.188) (-4066.905) (-4085.175) * (-4073.391) (-4075.450) [-4067.605] (-4066.083) -- 0:02:07
864000 -- (-4065.044) (-4069.609) [-4058.268] (-4070.739) * (-4084.513) (-4065.283) [-4075.927] (-4079.622) -- 0:02:06
865000 -- [-4064.864] (-4089.209) (-4078.832) (-4076.991) * (-4079.582) (-4075.602) [-4066.532] (-4079.342) -- 0:02:05
Average standard deviation of split frequencies: 0.005738
866000 -- (-4073.250) (-4076.611) [-4068.603] (-4079.445) * (-4070.697) [-4070.390] (-4062.209) (-4081.920) -- 0:02:04
867000 -- [-4066.545] (-4072.943) (-4069.877) (-4081.421) * (-4077.422) (-4072.712) [-4071.953] (-4075.161) -- 0:02:03
868000 -- (-4085.946) [-4067.839] (-4072.956) (-4090.699) * (-4070.528) (-4069.098) (-4077.272) [-4063.119] -- 0:02:03
869000 -- (-4078.649) (-4064.062) (-4068.255) [-4070.900] * (-4075.367) (-4066.686) (-4071.021) [-4066.303] -- 0:02:02
870000 -- (-4066.085) [-4072.107] (-4078.241) (-4097.415) * (-4074.006) (-4084.271) (-4077.447) [-4060.754] -- 0:02:01
Average standard deviation of split frequencies: 0.005820
871000 -- (-4083.564) [-4063.502] (-4065.017) (-4071.924) * [-4063.533] (-4075.190) (-4069.659) (-4070.387) -- 0:02:00
872000 -- (-4086.864) (-4069.759) [-4078.426] (-4067.147) * (-4070.611) (-4093.923) [-4065.917] (-4070.627) -- 0:01:59
873000 -- (-4071.777) (-4080.658) (-4082.177) [-4070.817] * [-4066.565] (-4069.766) (-4064.729) (-4084.948) -- 0:01:58
874000 -- [-4079.003] (-4074.627) (-4061.257) (-4074.651) * (-4066.750) [-4075.894] (-4068.266) (-4076.676) -- 0:01:57
875000 -- (-4078.242) (-4064.109) (-4075.175) [-4066.797] * (-4058.275) (-4088.789) [-4063.227] (-4075.125) -- 0:01:56
Average standard deviation of split frequencies: 0.005830
876000 -- (-4084.591) [-4069.362] (-4072.636) (-4082.056) * (-4069.131) (-4069.586) [-4070.569] (-4072.794) -- 0:01:55
877000 -- (-4070.691) (-4081.653) (-4074.708) [-4077.243] * (-4063.269) (-4074.264) (-4081.276) [-4067.897] -- 0:01:54
878000 -- (-4070.565) [-4071.664] (-4071.768) (-4064.432) * (-4070.041) (-4068.859) (-4082.072) [-4068.849] -- 0:01:53
879000 -- (-4079.661) [-4072.848] (-4076.408) (-4078.604) * (-4065.153) (-4085.863) (-4064.253) [-4067.145] -- 0:01:52
880000 -- (-4088.510) (-4063.693) (-4076.351) [-4061.763] * (-4069.127) (-4073.033) [-4068.929] (-4063.640) -- 0:01:51
Average standard deviation of split frequencies: 0.005554
881000 -- (-4088.402) (-4069.350) (-4081.528) [-4063.283] * [-4072.238] (-4072.466) (-4074.076) (-4063.468) -- 0:01:50
882000 -- (-4065.144) (-4079.386) [-4071.325] (-4083.229) * (-4083.341) (-4060.211) [-4072.007] (-4068.205) -- 0:01:49
883000 -- (-4070.747) (-4070.848) (-4064.241) [-4056.105] * (-4078.411) [-4062.897] (-4078.729) (-4080.648) -- 0:01:49
884000 -- (-4075.683) (-4076.927) [-4062.153] (-4066.106) * (-4080.239) (-4072.057) [-4059.288] (-4065.276) -- 0:01:48
885000 -- [-4072.554] (-4075.600) (-4074.994) (-4066.696) * (-4074.883) (-4063.014) (-4074.395) [-4060.362] -- 0:01:47
Average standard deviation of split frequencies: 0.005720
886000 -- (-4071.566) (-4074.853) [-4068.260] (-4071.563) * [-4075.247] (-4067.906) (-4069.811) (-4071.387) -- 0:01:46
887000 -- (-4067.116) (-4065.567) [-4064.737] (-4071.334) * (-4070.638) [-4067.736] (-4072.851) (-4073.193) -- 0:01:45
888000 -- (-4064.931) (-4071.959) [-4071.978] (-4070.209) * [-4066.975] (-4076.467) (-4081.527) (-4073.366) -- 0:01:44
889000 -- (-4081.950) (-4083.356) [-4067.149] (-4065.551) * (-4078.368) (-4068.266) (-4075.710) [-4067.938] -- 0:01:43
890000 -- [-4063.685] (-4075.694) (-4059.447) (-4069.642) * [-4069.460] (-4066.628) (-4077.612) (-4076.385) -- 0:01:42
Average standard deviation of split frequencies: 0.005954
891000 -- (-4067.847) (-4067.877) (-4080.635) [-4071.293] * (-4068.707) [-4068.467] (-4076.855) (-4074.735) -- 0:01:41
892000 -- (-4071.822) [-4077.180] (-4071.962) (-4079.288) * (-4072.864) (-4077.520) [-4063.818] (-4078.959) -- 0:01:40
893000 -- (-4082.659) [-4063.986] (-4078.651) (-4072.048) * (-4075.796) (-4068.993) (-4073.280) [-4065.541] -- 0:01:39
894000 -- (-4079.234) (-4059.941) (-4085.450) [-4068.489] * (-4074.193) [-4061.078] (-4070.891) (-4076.739) -- 0:01:38
895000 -- [-4057.219] (-4077.652) (-4060.194) (-4066.682) * (-4078.136) (-4084.905) [-4067.772] (-4068.779) -- 0:01:37
Average standard deviation of split frequencies: 0.005963
896000 -- (-4066.767) (-4073.611) [-4065.705] (-4064.813) * [-4069.669] (-4080.899) (-4065.145) (-4092.705) -- 0:01:36
897000 -- (-4073.248) (-4076.401) (-4067.091) [-4077.181] * [-4066.591] (-4073.949) (-4070.988) (-4078.242) -- 0:01:35
898000 -- (-4084.457) [-4074.605] (-4068.681) (-4089.083) * (-4080.318) (-4073.932) [-4066.330] (-4081.131) -- 0:01:35
899000 -- (-4066.727) (-4065.169) [-4061.697] (-4070.327) * (-4073.813) (-4071.571) [-4073.400] (-4077.880) -- 0:01:34
900000 -- (-4077.595) (-4064.353) (-4083.905) [-4070.413] * (-4075.911) (-4071.829) [-4073.252] (-4070.280) -- 0:01:33
Average standard deviation of split frequencies: 0.005975
901000 -- (-4079.317) (-4066.652) [-4076.988] (-4073.629) * (-4085.313) (-4070.667) (-4066.453) [-4060.717] -- 0:01:32
902000 -- (-4086.204) [-4071.226] (-4073.989) (-4074.594) * (-4074.723) [-4068.758] (-4076.435) (-4071.742) -- 0:01:31
903000 -- [-4061.240] (-4074.622) (-4072.193) (-4066.018) * (-4082.578) [-4069.786] (-4066.176) (-4080.525) -- 0:01:30
904000 -- (-4074.323) (-4071.953) [-4069.278] (-4064.362) * [-4071.033] (-4077.238) (-4071.934) (-4094.601) -- 0:01:29
905000 -- (-4069.938) [-4061.124] (-4071.891) (-4075.401) * [-4080.272] (-4077.315) (-4072.455) (-4075.233) -- 0:01:28
Average standard deviation of split frequencies: 0.005875
906000 -- (-4085.664) (-4082.473) [-4076.240] (-4054.895) * (-4069.528) (-4077.677) [-4061.151] (-4070.705) -- 0:01:27
907000 -- (-4077.596) (-4068.382) (-4073.498) [-4068.517] * (-4070.610) (-4061.376) [-4080.304] (-4083.309) -- 0:01:26
908000 -- (-4069.174) (-4074.358) (-4073.774) [-4069.995] * (-4062.250) [-4066.117] (-4068.503) (-4086.090) -- 0:01:25
909000 -- (-4067.741) (-4074.601) [-4070.172] (-4081.845) * (-4073.492) (-4060.120) (-4079.446) [-4066.323] -- 0:01:24
910000 -- (-4064.850) [-4073.706] (-4075.804) (-4073.057) * (-4081.381) (-4070.000) [-4071.690] (-4072.664) -- 0:01:23
Average standard deviation of split frequencies: 0.006018
911000 -- (-4072.008) (-4072.861) (-4065.655) [-4067.027] * (-4078.689) [-4070.942] (-4067.456) (-4068.807) -- 0:01:22
912000 -- (-4070.970) (-4073.920) (-4068.148) [-4070.061] * (-4067.798) (-4066.542) (-4073.855) [-4076.149] -- 0:01:22
913000 -- (-4068.201) (-4077.507) (-4065.732) [-4072.718] * (-4077.635) (-4078.992) (-4069.852) [-4060.590] -- 0:01:21
914000 -- (-4082.220) (-4077.575) [-4066.406] (-4066.978) * (-4066.936) (-4083.785) (-4063.416) [-4075.906] -- 0:01:20
915000 -- [-4061.153] (-4075.883) (-4087.027) (-4073.297) * [-4064.443] (-4070.121) (-4061.778) (-4097.549) -- 0:01:19
Average standard deviation of split frequencies: 0.006004
916000 -- (-4080.119) (-4069.640) (-4058.605) [-4060.271] * (-4076.509) (-4066.650) [-4059.636] (-4076.880) -- 0:01:18
917000 -- (-4073.561) (-4086.696) [-4062.431] (-4080.057) * (-4078.673) [-4079.929] (-4069.759) (-4069.827) -- 0:01:17
918000 -- [-4064.103] (-4072.276) (-4070.053) (-4078.608) * (-4074.576) (-4084.723) (-4076.209) [-4057.996] -- 0:01:16
919000 -- [-4072.638] (-4085.535) (-4072.641) (-4081.789) * (-4071.823) (-4068.829) (-4066.454) [-4065.956] -- 0:01:15
920000 -- [-4073.365] (-4076.156) (-4066.535) (-4077.083) * (-4069.079) (-4070.238) (-4073.805) [-4060.843] -- 0:01:14
Average standard deviation of split frequencies: 0.005995
921000 -- (-4076.644) (-4059.447) [-4073.658] (-4068.135) * (-4072.375) (-4066.503) (-4081.432) [-4070.039] -- 0:01:13
922000 -- (-4078.349) (-4072.749) (-4081.477) [-4062.280] * [-4068.123] (-4073.593) (-4067.909) (-4074.756) -- 0:01:12
923000 -- (-4075.985) (-4067.752) [-4070.639] (-4061.896) * (-4074.808) (-4065.764) [-4063.413] (-4066.875) -- 0:01:11
924000 -- (-4075.278) (-4062.537) (-4088.348) [-4063.923] * (-4062.822) (-4063.676) [-4074.373] (-4079.237) -- 0:01:10
925000 -- (-4068.683) [-4064.431] (-4069.928) (-4068.937) * (-4083.260) (-4066.502) (-4067.355) [-4066.223] -- 0:01:09
Average standard deviation of split frequencies: 0.006088
926000 -- (-4064.489) (-4074.779) (-4068.109) [-4064.438] * (-4071.861) [-4062.222] (-4086.864) (-4066.436) -- 0:01:08
927000 -- (-4085.239) (-4070.136) (-4072.257) [-4068.751] * (-4069.730) (-4068.646) (-4074.675) [-4070.163] -- 0:01:08
928000 -- (-4070.340) (-4078.305) [-4070.805] (-4061.784) * [-4062.048] (-4076.319) (-4084.579) (-4069.027) -- 0:01:07
929000 -- (-4076.526) (-4074.577) (-4068.566) [-4067.059] * (-4066.993) (-4081.972) (-4064.206) [-4067.170] -- 0:01:06
930000 -- (-4066.616) (-4071.260) [-4062.124] (-4079.354) * (-4072.600) (-4075.727) (-4063.919) [-4076.001] -- 0:01:05
Average standard deviation of split frequencies: 0.006226
931000 -- (-4076.417) (-4083.447) [-4062.744] (-4078.775) * [-4063.708] (-4076.852) (-4069.265) (-4069.564) -- 0:01:04
932000 -- [-4064.264] (-4065.112) (-4068.891) (-4073.795) * (-4058.762) (-4082.443) (-4072.568) [-4063.888] -- 0:01:03
933000 -- (-4071.768) (-4068.464) [-4067.105] (-4071.845) * (-4071.992) (-4060.126) (-4073.038) [-4063.361] -- 0:01:02
934000 -- (-4064.211) (-4064.845) (-4085.191) [-4068.242] * (-4065.639) (-4070.655) (-4072.599) [-4069.175] -- 0:01:01
935000 -- (-4068.413) [-4066.152] (-4072.004) (-4071.272) * (-4071.286) (-4071.989) (-4082.892) [-4064.027] -- 0:01:00
Average standard deviation of split frequencies: 0.006736
936000 -- (-4077.568) [-4071.685] (-4073.743) (-4066.823) * (-4072.873) (-4073.292) (-4067.750) [-4069.077] -- 0:00:59
937000 -- (-4069.323) (-4085.579) (-4066.602) [-4072.051] * (-4071.133) (-4070.585) [-4067.449] (-4071.889) -- 0:00:58
938000 -- (-4067.463) (-4078.367) [-4057.707] (-4084.907) * (-4078.761) (-4070.046) [-4071.182] (-4084.002) -- 0:00:57
939000 -- (-4074.263) [-4064.444] (-4068.900) (-4076.184) * (-4079.320) (-4061.744) [-4068.915] (-4074.085) -- 0:00:56
940000 -- (-4074.023) (-4064.919) [-4060.862] (-4083.821) * (-4076.568) (-4064.956) [-4068.239] (-4082.080) -- 0:00:55
Average standard deviation of split frequencies: 0.006390
941000 -- [-4064.364] (-4076.431) (-4072.043) (-4068.551) * [-4072.411] (-4085.245) (-4071.284) (-4074.462) -- 0:00:54
942000 -- (-4071.262) [-4069.384] (-4068.505) (-4069.997) * [-4070.432] (-4065.059) (-4072.593) (-4071.382) -- 0:00:54
943000 -- [-4070.393] (-4074.232) (-4079.858) (-4086.844) * [-4067.845] (-4073.665) (-4076.280) (-4077.555) -- 0:00:53
944000 -- [-4073.441] (-4068.666) (-4078.091) (-4075.104) * (-4075.639) (-4070.652) [-4072.541] (-4064.319) -- 0:00:52
945000 -- [-4064.489] (-4075.157) (-4078.375) (-4088.482) * (-4072.927) (-4072.786) (-4066.595) [-4068.665] -- 0:00:51
Average standard deviation of split frequencies: 0.006312
946000 -- (-4077.498) (-4069.522) (-4086.873) [-4085.143] * (-4066.004) (-4078.765) [-4063.755] (-4074.408) -- 0:00:50
947000 -- (-4069.404) (-4061.345) [-4071.453] (-4081.454) * [-4069.282] (-4080.282) (-4075.659) (-4075.822) -- 0:00:49
948000 -- (-4075.461) (-4089.486) (-4064.301) [-4069.755] * [-4069.282] (-4070.752) (-4063.537) (-4072.234) -- 0:00:48
949000 -- (-4087.781) (-4069.683) [-4064.833] (-4063.772) * (-4073.410) (-4075.019) [-4058.225] (-4078.995) -- 0:00:47
950000 -- (-4076.302) [-4063.558] (-4072.495) (-4064.013) * (-4075.131) (-4073.291) [-4059.337] (-4084.873) -- 0:00:46
Average standard deviation of split frequencies: 0.006508
951000 -- (-4072.365) (-4083.916) (-4067.547) [-4077.284] * (-4082.848) [-4065.027] (-4059.332) (-4073.730) -- 0:00:45
952000 -- (-4062.860) (-4079.298) [-4059.974] (-4079.560) * (-4073.892) (-4067.032) [-4060.522] (-4074.551) -- 0:00:44
953000 -- (-4078.022) (-4071.311) [-4065.151] (-4079.669) * [-4070.248] (-4073.858) (-4080.608) (-4069.711) -- 0:00:43
954000 -- (-4080.984) [-4069.532] (-4070.804) (-4070.790) * (-4072.661) (-4074.837) (-4071.430) [-4060.014] -- 0:00:42
955000 -- (-4092.486) [-4068.495] (-4070.796) (-4084.206) * [-4069.759] (-4075.284) (-4078.244) (-4065.566) -- 0:00:41
Average standard deviation of split frequencies: 0.006431
956000 -- (-4076.545) (-4064.641) (-4068.304) [-4082.050] * (-4070.783) (-4085.497) [-4077.652] (-4071.807) -- 0:00:41
957000 -- (-4070.363) [-4070.680] (-4075.716) (-4094.066) * (-4080.750) (-4068.466) [-4067.789] (-4076.664) -- 0:00:40
958000 -- (-4070.033) [-4070.915] (-4075.113) (-4087.689) * (-4078.693) (-4071.768) (-4086.476) [-4068.265] -- 0:00:39
959000 -- (-4071.999) (-4075.360) [-4067.545] (-4084.432) * [-4063.892] (-4068.868) (-4074.826) (-4077.997) -- 0:00:38
960000 -- (-4068.964) [-4073.995] (-4073.373) (-4076.693) * (-4077.849) (-4070.935) [-4079.097] (-4067.621) -- 0:00:37
Average standard deviation of split frequencies: 0.006604
961000 -- (-4074.103) (-4070.249) [-4072.468] (-4073.775) * (-4075.802) [-4062.580] (-4076.086) (-4074.474) -- 0:00:36
962000 -- (-4068.253) (-4084.229) (-4064.864) [-4067.230] * (-4077.535) (-4066.454) (-4083.303) [-4061.789] -- 0:00:35
963000 -- (-4078.256) [-4068.536] (-4076.172) (-4071.669) * (-4070.341) (-4065.930) (-4077.150) [-4065.083] -- 0:00:34
964000 -- (-4069.670) (-4070.416) [-4074.900] (-4072.881) * (-4088.392) (-4071.416) [-4072.394] (-4069.667) -- 0:00:33
965000 -- (-4079.166) [-4076.375] (-4073.940) (-4071.662) * (-4069.079) [-4064.319] (-4074.467) (-4084.389) -- 0:00:32
Average standard deviation of split frequencies: 0.006405
966000 -- [-4074.277] (-4075.174) (-4079.811) (-4069.087) * [-4068.042] (-4070.552) (-4084.775) (-4072.254) -- 0:00:31
967000 -- (-4064.252) [-4066.623] (-4071.711) (-4071.054) * (-4085.357) (-4073.629) [-4070.656] (-4068.582) -- 0:00:30
968000 -- (-4079.272) (-4066.639) (-4062.553) [-4072.726] * (-4071.341) [-4064.117] (-4063.450) (-4066.672) -- 0:00:29
969000 -- (-4069.063) (-4075.066) [-4073.885] (-4066.160) * [-4056.250] (-4071.401) (-4066.603) (-4068.531) -- 0:00:28
970000 -- (-4065.126) (-4069.036) (-4070.525) [-4072.404] * (-4075.901) (-4061.544) [-4065.174] (-4069.976) -- 0:00:27
Average standard deviation of split frequencies: 0.006455
971000 -- (-4073.471) (-4079.894) [-4065.642] (-4070.984) * (-4064.766) (-4071.585) [-4066.567] (-4066.312) -- 0:00:27
972000 -- (-4064.407) (-4073.703) [-4071.889] (-4073.223) * (-4094.813) [-4066.772] (-4070.824) (-4070.609) -- 0:00:26
973000 -- [-4075.850] (-4069.497) (-4082.581) (-4064.306) * [-4075.942] (-4067.003) (-4071.187) (-4082.877) -- 0:00:25
974000 -- [-4067.723] (-4071.240) (-4064.521) (-4067.631) * (-4070.575) [-4058.749] (-4076.646) (-4067.032) -- 0:00:24
975000 -- (-4071.743) (-4071.211) (-4071.529) [-4067.623] * (-4066.986) [-4068.605] (-4060.951) (-4072.549) -- 0:00:23
Average standard deviation of split frequencies: 0.006219
976000 -- (-4070.319) [-4057.815] (-4082.106) (-4080.531) * [-4069.392] (-4072.327) (-4068.563) (-4073.429) -- 0:00:22
977000 -- [-4062.459] (-4072.805) (-4068.417) (-4069.803) * (-4074.612) [-4065.164] (-4077.912) (-4065.651) -- 0:00:21
978000 -- (-4075.201) (-4066.126) (-4062.561) [-4061.649] * (-4064.616) (-4081.989) (-4081.902) [-4075.840] -- 0:00:20
979000 -- (-4072.396) (-4067.576) [-4069.650] (-4068.133) * (-4081.710) (-4070.563) (-4075.211) [-4066.947] -- 0:00:19
980000 -- [-4062.226] (-4073.437) (-4072.925) (-4077.618) * (-4071.406) [-4072.459] (-4065.644) (-4065.388) -- 0:00:18
Average standard deviation of split frequencies: 0.006229
981000 -- [-4057.167] (-4082.011) (-4069.513) (-4077.065) * (-4063.161) [-4074.957] (-4078.923) (-4068.774) -- 0:00:17
982000 -- (-4076.120) [-4065.983] (-4070.872) (-4070.532) * [-4068.028] (-4094.450) (-4074.419) (-4076.443) -- 0:00:16
983000 -- (-4068.515) (-4093.903) [-4066.014] (-4082.173) * (-4074.583) [-4063.912] (-4068.285) (-4068.653) -- 0:00:15
984000 -- (-4072.623) (-4073.718) (-4075.507) [-4063.490] * (-4065.562) [-4078.858] (-4078.227) (-4068.238) -- 0:00:14
985000 -- [-4064.193] (-4074.091) (-4071.376) (-4067.558) * (-4060.950) (-4067.533) (-4076.053) [-4063.302] -- 0:00:13
Average standard deviation of split frequencies: 0.005956
986000 -- (-4084.608) (-4078.541) [-4062.430] (-4067.839) * (-4075.269) (-4082.920) (-4081.887) [-4069.257] -- 0:00:13
987000 -- (-4070.818) (-4079.121) (-4069.796) [-4069.206] * [-4069.695] (-4077.118) (-4078.678) (-4057.746) -- 0:00:12
988000 -- [-4066.954] (-4075.617) (-4067.001) (-4073.021) * (-4087.485) (-4067.665) (-4075.309) [-4064.579] -- 0:00:11
989000 -- (-4076.724) [-4066.857] (-4075.179) (-4079.421) * (-4073.356) (-4069.323) (-4081.472) [-4062.924] -- 0:00:10
990000 -- (-4064.451) (-4078.156) (-4081.188) [-4075.153] * (-4082.178) [-4072.416] (-4069.630) (-4084.550) -- 0:00:09
Average standard deviation of split frequencies: 0.005889
991000 -- (-4069.459) (-4075.813) [-4070.423] (-4074.883) * (-4071.273) [-4070.881] (-4076.192) (-4074.142) -- 0:00:08
992000 -- [-4081.144] (-4071.886) (-4065.429) (-4082.529) * (-4068.910) (-4069.111) (-4076.160) [-4068.085] -- 0:00:07
993000 -- (-4074.807) (-4072.947) [-4065.797] (-4065.402) * (-4065.210) (-4071.069) [-4076.970] (-4063.083) -- 0:00:06
994000 -- (-4076.928) (-4068.854) (-4069.337) [-4062.402] * [-4069.636] (-4075.942) (-4070.881) (-4067.623) -- 0:00:05
995000 -- (-4069.811) (-4063.692) (-4071.865) [-4061.656] * [-4072.039] (-4086.472) (-4077.536) (-4071.165) -- 0:00:04
Average standard deviation of split frequencies: 0.005423
996000 -- (-4075.645) (-4066.812) [-4071.968] (-4056.558) * (-4074.662) [-4058.812] (-4069.024) (-4065.459) -- 0:00:03
997000 -- (-4071.215) (-4065.049) [-4063.845] (-4062.971) * (-4064.274) (-4081.599) [-4067.222] (-4073.688) -- 0:00:02
998000 -- (-4079.410) (-4070.762) (-4073.978) [-4067.826] * (-4070.460) (-4070.955) (-4073.064) [-4063.784] -- 0:00:01
999000 -- (-4068.875) [-4070.270] (-4066.828) (-4081.646) * (-4071.825) [-4066.155] (-4082.114) (-4066.403) -- 0:00:00
1000000 -- [-4056.122] (-4076.460) (-4069.469) (-4066.493) * (-4074.734) (-4067.852) (-4061.303) [-4060.747] -- 0:00:00
Average standard deviation of split frequencies: 0.005221
Analysis completed in 15 mins 31 seconds
Analysis used 930.80 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -4050.86
Likelihood of best state for "cold" chain of run 2 was -4050.86
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
36.5 % ( 26 %) Dirichlet(Revmat{all})
54.7 % ( 39 %) Slider(Revmat{all})
20.6 % ( 26 %) Dirichlet(Pi{all})
25.9 % ( 22 %) Slider(Pi{all})
29.5 % ( 23 %) Multiplier(Alpha{1,2})
49.9 % ( 31 %) Multiplier(Alpha{3})
59.9 % ( 34 %) Slider(Pinvar{all})
24.7 % ( 21 %) ExtSPR(Tau{all},V{all})
14.4 % ( 12 %) ExtTBR(Tau{all},V{all})
28.0 % ( 31 %) NNI(Tau{all},V{all})
27.2 % ( 26 %) ParsSPR(Tau{all},V{all})
26.9 % ( 21 %) Multiplier(V{all})
38.2 % ( 35 %) Nodeslider(V{all})
24.8 % ( 22 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
36.7 % ( 31 %) Dirichlet(Revmat{all})
56.4 % ( 48 %) Slider(Revmat{all})
21.4 % ( 27 %) Dirichlet(Pi{all})
25.6 % ( 25 %) Slider(Pi{all})
30.1 % ( 27 %) Multiplier(Alpha{1,2})
49.5 % ( 21 %) Multiplier(Alpha{3})
61.0 % ( 44 %) Slider(Pinvar{all})
24.8 % ( 26 %) ExtSPR(Tau{all},V{all})
14.4 % ( 8 %) ExtTBR(Tau{all},V{all})
28.0 % ( 25 %) NNI(Tau{all},V{all})
27.3 % ( 24 %) ParsSPR(Tau{all},V{all})
27.0 % ( 25 %) Multiplier(V{all})
38.4 % ( 30 %) Nodeslider(V{all})
24.6 % ( 26 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.71 0.49 0.32
2 | 167536 0.74 0.52
3 | 166874 166736 0.76
4 | 166195 166267 166392
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.72 0.49 0.32
2 | 166374 0.74 0.52
3 | 166642 167024 0.76
4 | 166687 166771 166502
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -4065.25
| 2 1 |
| 2 |
| 2 1 2 1 2 |
| 2 22 1 21 1|
| 1 1 2 2 2 1 1 2 1 1 2 |
| 2 1 2 1 221 1 1 2 2 1 *21 1 2|
| 1 1 2 1 22 2221 2 11 1 2 |
| 1 2 1 2 1 21 1 2 1* *2 1 |
| 1 1 1 12 2 1 2 2 2 1 222 2 |
| 1 1 1 2 |
| 2 1 1 1 1 2 1 2 |
|1 2 2 11 2 2 1 |
|2 2 22 |
| 1 1 1 |
| 2 1 1 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -4071.16
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -4059.59 -4082.26
2 -4060.52 -4082.39
--------------------------------------
TOTAL -4059.95 -4082.33
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.960602 0.007811 0.792385 1.137121 0.952958 926.70 1081.49 1.000
r(A<->C){all} 0.094895 0.000514 0.050050 0.136239 0.093599 853.85 867.14 1.000
r(A<->G){all} 0.243614 0.000778 0.192406 0.301975 0.242388 803.17 989.25 1.002
r(A<->T){all} 0.074763 0.000197 0.050808 0.104558 0.074004 1115.77 1165.61 1.000
r(C<->G){all} 0.110207 0.000535 0.067374 0.156350 0.108718 687.95 774.38 1.000
r(C<->T){all} 0.405297 0.001036 0.343873 0.470783 0.405172 780.61 833.83 1.000
r(G<->T){all} 0.071223 0.000206 0.044967 0.100101 0.070492 1136.62 1206.31 1.000
pi(A){all} 0.251114 0.000116 0.231695 0.273109 0.251028 1039.61 1087.09 1.000
pi(C){all} 0.185638 0.000085 0.168074 0.203668 0.185686 1045.73 1171.41 1.001
pi(G){all} 0.217639 0.000106 0.197029 0.237841 0.217456 1090.43 1113.08 1.000
pi(T){all} 0.345608 0.000137 0.322877 0.368387 0.345575 1045.13 1103.29 1.000
alpha{1,2} 0.235626 0.001746 0.164660 0.325512 0.231239 1067.27 1193.31 1.000
alpha{3} 3.232228 1.666248 1.283614 5.837711 2.956414 1225.80 1252.38 1.000
pinvar{all} 0.086540 0.003210 0.000105 0.190028 0.079067 1135.83 1235.34 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C1
2 -- C10
3 -- C11
4 -- C12
5 -- C13
6 -- C14
7 -- C15
8 -- C2
9 -- C3
10 -- C4
11 -- C5
12 -- C6
13 -- C7
14 -- C8
15 -- C9
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
---------------------
1 -- .**************
2 -- .*.............
3 -- ..*............
4 -- ...*...........
5 -- ....*..........
6 -- .....*.........
7 -- ......*........
8 -- .......*.......
9 -- ........*......
10 -- .........*.....
11 -- ..........*....
12 -- ...........*...
13 -- ............*..
14 -- .............*.
15 -- ..............*
16 -- .*.****.*******
17 -- .*..*..........
18 -- .....**......*.
19 -- ...*.**......*.
20 -- ..*....*.......
21 -- ........*...*..
22 -- ........*****..
23 -- .*..*...*****.*
24 -- ........*****.*
25 -- .........***...
26 -- ......*......*.
27 -- .....*.......*.
28 -- .*..*...*****..
29 -- .....**........
30 -- .........**....
31 -- ..........**...
32 -- .........*.*...
33 -- .*.****.******.
34 -- ........*..**..
35 -- ........***.*..
36 -- ........**.**..
37 -- ........**..*..
38 -- ........*.*.*..
39 -- ........*.***..
---------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
16 3002 1.000000 0.000000 1.000000 1.000000 2
17 3002 1.000000 0.000000 1.000000 1.000000 2
18 3001 0.999667 0.000471 0.999334 1.000000 2
19 2999 0.999001 0.000471 0.998668 0.999334 2
20 2945 0.981013 0.006124 0.976682 0.985343 2
21 2744 0.914057 0.003769 0.911392 0.916722 2
22 2693 0.897069 0.007066 0.892072 0.902065 2
23 1860 0.619587 0.001884 0.618254 0.620919 2
24 1860 0.619587 0.013191 0.610260 0.628914 2
25 1176 0.391739 0.000942 0.391073 0.392405 2
26 1017 0.338774 0.007066 0.333777 0.343771 2
27 1005 0.334777 0.008009 0.329114 0.340440 2
28 993 0.330779 0.009893 0.323784 0.337775 2
29 980 0.326449 0.000942 0.325783 0.327115 2
30 727 0.242172 0.000471 0.241839 0.242505 2
31 681 0.226849 0.003298 0.224517 0.229181 2
32 675 0.224850 0.008009 0.219187 0.230513 2
33 537 0.178881 0.002355 0.177215 0.180546 2
34 431 0.143571 0.001413 0.142572 0.144570 2
35 419 0.139574 0.006124 0.135243 0.143904 2
36 414 0.137908 0.012248 0.129247 0.146569 2
37 399 0.132911 0.007066 0.127915 0.137908 2
38 397 0.132245 0.017430 0.119920 0.144570 2
39 387 0.128914 0.007066 0.123917 0.133911 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.006049 0.000006 0.001803 0.010874 0.005782 1.000 2
length{all}[2] 0.000871 0.000001 0.000000 0.002577 0.000625 1.001 2
length{all}[3] 0.000811 0.000001 0.000000 0.002375 0.000573 1.000 2
length{all}[4] 0.001021 0.000001 0.000000 0.003074 0.000683 1.001 2
length{all}[5] 0.001670 0.000001 0.000029 0.003979 0.001378 1.000 2
length{all}[6] 0.000834 0.000001 0.000000 0.002449 0.000586 1.000 2
length{all}[7] 0.005940 0.000005 0.001943 0.010420 0.005605 1.000 2
length{all}[8] 0.000844 0.000001 0.000000 0.002575 0.000579 1.000 2
length{all}[9] 0.001192 0.000001 0.000000 0.003547 0.000837 1.000 2
length{all}[10] 0.001200 0.000002 0.000001 0.003740 0.000803 1.001 2
length{all}[11] 0.001194 0.000001 0.000000 0.003681 0.000822 1.000 2
length{all}[12] 0.001187 0.000001 0.000000 0.003605 0.000828 1.000 2
length{all}[13] 0.001205 0.000001 0.000000 0.003656 0.000848 1.000 2
length{all}[14] 0.000851 0.000001 0.000000 0.002531 0.000588 1.002 2
length{all}[15] 0.688567 0.006364 0.534930 0.842158 0.683250 1.000 2
length{all}[16] 0.094656 0.000179 0.069013 0.122073 0.094509 1.000 2
length{all}[17] 0.044114 0.000069 0.028530 0.060235 0.043848 1.000 2
length{all}[18] 0.014591 0.000014 0.007899 0.022202 0.014241 1.000 2
length{all}[19] 0.028100 0.000042 0.015890 0.040713 0.027668 1.000 2
length{all}[20] 0.003428 0.000004 0.000206 0.007017 0.003142 1.000 2
length{all}[21] 0.003271 0.000005 0.000001 0.007362 0.002864 1.000 2
length{all}[22] 0.027067 0.000212 0.000045 0.049981 0.027631 1.000 2
length{all}[23] 0.010340 0.000032 0.000230 0.020383 0.009943 1.000 2
length{all}[24] 0.026939 0.000158 0.003104 0.050760 0.026768 1.001 2
length{all}[25] 0.002272 0.000004 0.000001 0.006054 0.001796 1.001 2
length{all}[26] 0.000849 0.000001 0.000001 0.002709 0.000577 1.000 2
length{all}[27] 0.000847 0.000001 0.000000 0.002480 0.000615 1.003 2
length{all}[28] 0.012194 0.000037 0.000697 0.023394 0.011552 1.000 2
length{all}[29] 0.000839 0.000001 0.000001 0.002382 0.000606 1.002 2
length{all}[30] 0.001131 0.000001 0.000001 0.003597 0.000730 1.000 2
length{all}[31] 0.001154 0.000001 0.000001 0.003342 0.000814 0.999 2
length{all}[32] 0.001183 0.000001 0.000001 0.003450 0.000821 1.001 2
length{all}[33] 0.012492 0.000084 0.000187 0.029604 0.011069 0.998 2
length{all}[34] 0.001290 0.000002 0.000002 0.003785 0.000891 1.000 2
length{all}[35] 0.001213 0.000002 0.000011 0.004003 0.000787 0.998 2
length{all}[36] 0.001305 0.000002 0.000002 0.004137 0.000852 0.998 2
length{all}[37] 0.001135 0.000001 0.000003 0.003384 0.000748 0.997 2
length{all}[38] 0.001258 0.000002 0.000003 0.003792 0.000868 1.006 2
length{all}[39] 0.001141 0.000001 0.000009 0.003284 0.000824 1.002 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.005221
Maximum standard deviation of split frequencies = 0.017430
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.006
Clade credibility values:
/----------------------------------------------------------------------- C1 (1)
|
| /------------ C10 (2)
| /----------------100---------------+
| | \------------ C13 (5)
| |
| | /------------ C3 (9)
| | /-----91----+
| | | \------------ C7 (13)
| /-----62----+ |
| | | |------------------------ C4 (10)
| | | /----90----+
| | | | |------------------------ C5 (11)
| | | | |
+ | \-----62----+ \------------------------ C6 (12)
|----100----+ |
| | \----------------------------------- C9 (15)
| |
| | /------------------------ C12 (4)
| | |
| \----------------100---------------+ /------------ C14 (6)
| | |
| \----100----+------------ C15 (7)
| |
| \------------ C8 (14)
|
| /------------ C11 (3)
\----------------------------98----------------------------+
\------------ C2 (8)
Phylogram (based on average branch lengths):
/- C1 (1)
|
| / C10 (2)
| /---+
| | \ C13 (5)
| |
| | / C3 (9)
| | |
| | | C7 (13)
| /+ |
| || | C4 (10)
| || /--+
| || | | C5 (11)
| || | |
+ |\-+ \ C6 (12)
|-------+ |
| | \------------------------------------------------------------ C9 (15)
| |
| | / C12 (4)
| | |
| \--+/ C14 (6)
| ||
| \+ C15 (7)
| |
| \ C8 (14)
|
| C11 (3)
|
\ C2 (8)
|-------| 0.100 expected changes per site
Calculating tree probabilities...
Credible sets of trees (703 trees sampled):
50 % credible set contains 62 trees
90 % credible set contains 403 trees
95 % credible set contains 553 trees
99 % credible set contains 673 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Wed Nov 02 20:10:40 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.09 sec, SCORE=1000, Nseq=15, Len=443
C1 MGRMCIAMAPRTLLLLIGCQLVFGFNEPINIVSHLNDDWFLFGDSRSDCT
C2 MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCT
C3 --------------------------------------------------
C4 --------------------------------------------------
C5 --------------------------------------------------
C6 --------------------------------------------------
C7 --------------------------------------------------
C8 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C9 MACTD-AMAPRTLLLVLSLGYALGFNEPLNVVSHLNDDWFLFGDSRSDCN
C10 MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C11 MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCT
C12 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C13 MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIFSHLNDDWFLFGDSRSDCT
C14 MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C15 MGSTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCT
C1 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C2 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C3 --------------------------------------------------
C4 --------------------------------------------------
C5 --------------------------------------------------
C6 --------------------------------------------------
C7 --------------------------------------------------
C8 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C9 HINNLSHQNYNYMDLNPELCKSGKISAKAGNSLFKSFHFTDFYNYTGEGS
C10 YVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGD
C11 YVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGD
C12 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C13 YVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGD
C14 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C15 YVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGD
C1 QIIFYEGVNFSPSHGFKCLVEGDNNKWMGNKARFYALLYKKMAQYRSLSF
C2 QIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSF
C3 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C4 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C5 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C6 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C7 ---------------------------MGNKARFYARVYEKMAQYRSLSF
C8 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C9 QIIFYEGVNFTPYVGFKCLNNGDNSRWMGNKARFYTQLYQKMAHYRSLSI
C10 QVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C11 QIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSF
C12 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C13 QVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C14 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSF
C15 QIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKAAFYARVYEKMAQYRSLSF
***** **: :*:***:*****:
C1 VTVPYAYGGNAKPTSICKDK----TLTLNNPTFISKES--VDYYYVSEAN
C2 VIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEAN
C3 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C4 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C5 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C6 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C7 VNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEAN
C8 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C9 INITYTYNGSAGPVSMCKHTANGATLTLNNPTFIGKEASAPNYYYGSEAN
C10 VNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEAN
C11 VIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEAN
C12 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C13 VNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEAN
C14 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
C15 VNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEAN
: :.*:*.*.* *.*:**.. **********.**: :*** ****
C1 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNIDTGVLYGFN
C2 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C3 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C4 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C5 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C6 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C7 FTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFN
C8 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C9 FTLHGCDEFIVPLCVFNGEYLSS-----KLYYDDSQYYYNMDTGVLYGFN
C10 FTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C11 FTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C12 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C13 FTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFN
C14 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFN
C15 FTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGLN
*** ********** ***. .* : ** *** ***:* *****:*
C1 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C2 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C3 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C4 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C5 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C6 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C7 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
C8 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C9 STLNI-----TIGLDLTCIYLLLTPGNYKSISNELLLTMPSKAICLRKAK
C10 STLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C11 STLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
C12 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C13 STLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C14 STLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
C15 CTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
.**:: ****** ** *******::* * **::*******:*.*
C1 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C2 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C3 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C4 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C5 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C6 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C7 RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHG
C8 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C9 AFTPVQVVDSRWHSNRQSDNMTAIACQLPYCYFRNTTSDYNG-VYDSHHG
C10 SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C11 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHG
C12 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C13 SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C14 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
C15 RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHG
* ********* * ******** *******:****:::*.* .:* ***
C1 DFYFRQLLSGLLYNVSCIAQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C2 DFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C3 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C4 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C5 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C6 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C7 DFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYM
C8 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C9 DAGFTSVLAGLMYNVSCIAQQGAFVYNNVSSSWPQYPYGHCPTAANIGFI
C10 DFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYM
C11 DFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYM
C12 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C13 DFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYM
C14 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
C15 DFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYM
* * .:*:**: *****:*****:****** ** * **:********::
C1 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C2 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C3 APVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA
C4 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C5 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C6 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C7 APVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA
C8 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
C9 APVCMYDPLPVILLGVLLGIAVLIIVFLLFYFMTDSGVRLHEI
C10 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C11 APVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA
C12 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C13 APVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA
C14 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
C15 APVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
****:******:*********** ****::***:**.*****
-- Starting log on Wed Nov 02 23:51:01 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/codeml,A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C1 1329 sites
reading seq# 2 C2 1329 sites
reading seq# 3 C3 1329 sites
reading seq# 4 C4 1329 sites
reading seq# 5 C5 1329 sites
reading seq# 6 C6 1329 sites
reading seq# 7 C7 1329 sites
reading seq# 8 C8 1329 sites
reading seq# 9 C9 1329 sites
reading seq#10 C10 1329 sites
reading seq#11 C11 1329 sites
reading seq#12 C12 1329 sites
reading seq#13 C13 1329 sites
reading seq#14 C14 1329 sites
reading seq#15 C15 1329 sitesns = 15 ls = 1329
Reading sequences, sequential format..
Reading seq # 1: C1
Reading seq # 2: C2
Reading seq # 3: C3
Reading seq # 4: C4
Reading seq # 5: C5
Reading seq # 6: C6
Reading seq # 7: C7
Reading seq # 8: C8
Reading seq # 9: C9
Reading seq #10: C10
Reading seq #11: C11
Reading seq #12: C12
Reading seq #13: C13
Reading seq #14: C14
Reading seq #15: C15
Sites with gaps or missing data are removed.
18 ambiguity characters in seq. 1
12 ambiguity characters in seq. 2
393 ambiguity characters in seq. 3
393 ambiguity characters in seq. 4
393 ambiguity characters in seq. 5
393 ambiguity characters in seq. 6
393 ambiguity characters in seq. 7
12 ambiguity characters in seq. 8
36 ambiguity characters in seq. 9
12 ambiguity characters in seq. 10
12 ambiguity characters in seq. 11
12 ambiguity characters in seq. 12
12 ambiguity characters in seq. 13
12 ambiguity characters in seq. 14
12 ambiguity characters in seq. 15
144 sites are removed. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 171 172 173 174 189 190 224 225 226 227 228 256 257 258 259 260 343
Sequences read..
Counting site patterns.. 0:00
Compressing, 228 patterns at 299 / 299 sites (100.0%), 0:01
Collecting fpatt[] & pose[], 228 patterns at 299 / 299 sites (100.0%), 0:01
Counting codons..
840 bytes for distance
222528 bytes for conP
20064 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(1, (((10, 13), (((3, 7), 4, 5, 6), 9)), (12, (14, 15, 8))), (11, 2)); MP score: 313
1112640 bytes for conP, adjusted
0.081404 0.038526 0.054547 0.014268 0.104251 0.029205 0.107699 0.049048 0.105704 0.057016 0.064226 0.070626 0.014127 0.078421 0.055768 0.085838 0.060678 0.083545 0.022316 0.090512 0.070775 0.071663 0.090750 0.029866 0.300000 0.608472 0.139905
ntime & nrate & np: 24 2 27
Bounds (np=27):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 14.193731
np = 27
lnL0 = -3634.973819
Iterating by ming2
Initial: fx= 3634.973819
x= 0.08140 0.03853 0.05455 0.01427 0.10425 0.02921 0.10770 0.04905 0.10570 0.05702 0.06423 0.07063 0.01413 0.07842 0.05577 0.08584 0.06068 0.08355 0.02232 0.09051 0.07077 0.07166 0.09075 0.02987 0.30000 0.60847 0.13990
1 h-m-p 0.0000 0.0001 3973.9011 ++ 3211.488909 m 0.0001 32 | 1/27
2 h-m-p 0.0000 0.0000 1048.8757 ++ 3174.525556 m 0.0000 62 | 2/27
3 h-m-p 0.0000 0.0000 154331.7496 ++ 3147.542763 m 0.0000 92 | 3/27
4 h-m-p 0.0000 0.0000 4899.1705 ++ 3145.621250 m 0.0000 122 | 4/27
5 h-m-p 0.0000 0.0000 4271.1327 ++ 3048.004915 m 0.0000 152 | 5/27
6 h-m-p 0.0000 0.0000 7274.8828 ++ 3026.457486 m 0.0000 182 | 6/27
7 h-m-p 0.0000 0.0000 61794.5076 ++ 3009.778187 m 0.0000 212 | 7/27
8 h-m-p 0.0000 0.0000 9423.1155 ++ 3007.116610 m 0.0000 242 | 8/27
9 h-m-p 0.0000 0.0000 6874.9579 ++ 2995.988742 m 0.0000 272 | 9/27
10 h-m-p 0.0000 0.0000 2904.0399 ++ 2980.777387 m 0.0000 302 | 10/27
11 h-m-p 0.0000 0.0000 2251.7981 ++ 2966.961638 m 0.0000 332 | 11/27
12 h-m-p 0.0000 0.0003 467.9875 ++ 2937.468645 m 0.0003 362 | 11/27
13 h-m-p 0.0000 0.0000 787.1540 ++ 2931.667293 m 0.0000 392 | 11/27
14 h-m-p 0.0000 0.0000 2301.5271 +YYYYCYCCC 2920.906514 8 0.0000 434 | 11/27
15 h-m-p 0.0000 0.0002 765.5815 CCCCC 2916.216989 4 0.0001 472 | 11/27
16 h-m-p 0.0001 0.0004 123.7918 CCCC 2915.255615 3 0.0001 508 | 11/27
17 h-m-p 0.0001 0.0004 103.5723 CCC 2914.857257 2 0.0001 542 | 11/27
18 h-m-p 0.0001 0.0005 32.1333 ++ 2913.275266 m 0.0005 572 | 11/27
19 h-m-p 0.0003 0.0023 44.2310 CCCC 2911.654452 3 0.0006 608 | 11/27
20 h-m-p 0.0002 0.0009 118.6242 CCC 2910.505480 2 0.0002 642 | 11/27
21 h-m-p 0.0002 0.0008 58.0737 CCCC 2909.986469 3 0.0002 678 | 11/27
22 h-m-p 0.0004 0.0035 34.6520 +YCC 2907.670063 2 0.0010 712 | 11/27
23 h-m-p 0.0002 0.0011 111.1266 YCCC 2904.010649 3 0.0004 747 | 11/27
24 h-m-p 0.0017 0.0083 3.2908 CCC 2903.879144 2 0.0020 781 | 11/27
25 h-m-p 0.0008 0.0164 8.1006 +CCCC 2902.774339 3 0.0044 818 | 11/27
26 h-m-p 0.0091 0.0457 1.4385 +YYCYYCCC 2881.055391 7 0.0400 860 | 11/27
27 h-m-p 0.1069 1.5897 0.5378 ++ 2797.728644 m 1.5897 890 | 11/27
28 h-m-p 0.0135 0.2807 63.2009 CYC 2778.861239 2 0.0102 939 | 11/27
29 h-m-p 0.2472 1.2358 0.0819 ++ 2758.398678 m 1.2358 969 | 12/27
30 h-m-p 0.0565 0.2827 0.5325 +YYCYCCC 2740.702864 6 0.2385 1025 | 12/27
31 h-m-p 0.1694 8.0000 0.7497 +YYCCC 2730.121808 4 1.0534 1077 | 12/27
32 h-m-p 0.3730 1.8650 0.1547 +YYYCCC 2720.938380 5 1.3964 1130 | 12/27
33 h-m-p 0.5978 2.9892 0.0912 +YYCCC 2708.727018 4 2.0738 1182 | 12/27
34 h-m-p 1.5584 8.0000 0.1214 YYCCC 2702.180054 4 2.2436 1233 | 12/27
35 h-m-p 1.6000 8.0000 0.0761 YCYC 2697.686207 3 3.5013 1282 | 12/27
36 h-m-p 1.6000 8.0000 0.0519 CCCC 2695.904562 3 2.3582 1333 | 12/27
37 h-m-p 1.1338 5.6689 0.0674 CCCCC 2693.845902 4 1.5644 1386 | 12/27
38 h-m-p 1.6000 8.0000 0.0350 +YCCC 2691.798885 3 4.7943 1437 | 12/27
39 h-m-p 0.9601 4.8006 0.1646 +YCCC 2689.106941 3 2.7064 1488 | 12/27
40 h-m-p 1.6000 8.0000 0.1338 YC 2687.049288 1 3.5071 1534 | 12/27
41 h-m-p 1.6000 8.0000 0.0357 YCC 2686.577329 2 2.6067 1582 | 12/27
42 h-m-p 1.2247 6.1233 0.0735 YCC 2686.324626 2 2.1316 1630 | 12/27
43 h-m-p 0.7828 3.9142 0.0204 +YC 2686.131020 1 2.2338 1677 | 12/27
44 h-m-p 0.4666 2.3330 0.0152 ++ 2686.023979 m 2.3330 1722 | 13/27
45 h-m-p 1.6000 8.0000 0.0126 YC 2686.006106 1 0.9351 1768 | 13/27
46 h-m-p 0.5013 8.0000 0.0234 CC 2685.984118 1 0.7905 1814 | 13/27
47 h-m-p 1.6000 8.0000 0.0063 +YC 2685.954265 1 4.2308 1860 | 13/27
48 h-m-p 1.6000 8.0000 0.0025 +YC 2685.893957 1 5.1801 1906 | 13/27
49 h-m-p 1.5874 8.0000 0.0082 +YC 2685.735428 1 6.7243 1952 | 13/27
50 h-m-p 1.6000 8.0000 0.0176 ++ 2685.243702 m 8.0000 1996 | 13/27
51 h-m-p 1.6000 8.0000 0.0473 YCCC 2684.704663 3 3.5352 2045 | 13/27
52 h-m-p 1.6000 8.0000 0.0514 YCC 2684.425473 2 2.5795 2092 | 13/27
53 h-m-p 1.6000 8.0000 0.0146 +YCC 2684.182417 2 4.6109 2140 | 13/27
54 h-m-p 1.6000 8.0000 0.0211 YC 2684.017109 1 2.9372 2185 | 13/27
55 h-m-p 1.6000 8.0000 0.0204 C 2683.982619 0 1.6000 2229 | 13/27
56 h-m-p 1.6000 8.0000 0.0009 C 2683.980551 0 1.7695 2273 | 13/27
57 h-m-p 1.6000 8.0000 0.0009 C 2683.980335 0 1.7455 2317 | 13/27
58 h-m-p 1.6000 8.0000 0.0007 C 2683.980283 0 1.8010 2361 | 13/27
59 h-m-p 1.6000 8.0000 0.0004 C 2683.980279 0 1.7344 2405 | 13/27
60 h-m-p 1.6000 8.0000 0.0001 C 2683.980277 0 1.9227 2449 | 13/27
61 h-m-p 1.6000 8.0000 0.0000 C 2683.980277 0 1.3741 2493 | 13/27
62 h-m-p 1.6000 8.0000 0.0000 C 2683.980277 0 1.6000 2537 | 13/27
63 h-m-p 1.6000 8.0000 0.0000 --C 2683.980277 0 0.0354 2583 | 13/27
64 h-m-p 0.0241 8.0000 0.0000 -------------.. | 13/27
65 h-m-p 0.0100 5.0178 0.0045 ------------- | 13/27
66 h-m-p 0.0100 5.0178 0.0045 -------------
Out..
lnL = -2683.980277
2749 lfun, 8247 eigenQcodon, 131952 P(t)
end of tree file.
Time used: 1:12
Model 2: PositiveSelection
TREE # 1
(1, (((10, 13), (((3, 7), 4, 5, 6), 9)), (12, (14, 15, 8))), (11, 2)); MP score: 313
0.046632 0.052555 0.066434 0.030182 0.078954 0.094306 0.067141 0.068142 0.052517 0.102082 0.020120 0.075273 0.037637 0.084710 0.049777 0.044920 0.101865 0.050914 0.087586 0.020263 0.043401 0.070684 0.095304 0.101141 2.494198 0.908972 0.404629 0.420138 1.550269
ntime & nrate & np: 24 3 29
Bounds (np=29):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 4.615263
np = 29
lnL0 = -3576.055246
Iterating by ming2
Initial: fx= 3576.055246
x= 0.04663 0.05256 0.06643 0.03018 0.07895 0.09431 0.06714 0.06814 0.05252 0.10208 0.02012 0.07527 0.03764 0.08471 0.04978 0.04492 0.10187 0.05091 0.08759 0.02026 0.04340 0.07068 0.09530 0.10114 2.49420 0.90897 0.40463 0.42014 1.55027
1 h-m-p 0.0000 0.0001 4133.8077 ++ 3123.364357 m 0.0001 63 | 1/29
2 h-m-p 0.0000 0.0001 974.1236 ++ 3065.258545 m 0.0001 124 | 2/29
3 h-m-p 0.0000 0.0000 22531.4347 ++ 3047.792327 m 0.0000 184 | 3/29
4 h-m-p 0.0000 0.0000 296855.2750 ++ 2987.127118 m 0.0000 243 | 3/29
5 h-m-p 0.0000 0.0000 7563.9458 ++ 2978.514664 m 0.0000 301 | 4/29
6 h-m-p 0.0000 0.0000 1192.2772 ++ 2962.912689 m 0.0000 359 | 4/29
7 h-m-p 0.0000 0.0000 631264.3001
h-m-p: 5.99574835e-24 2.99787417e-23 6.31264300e+05 2962.912689
.. | 4/29
8 h-m-p 0.0000 0.0000 146808.7537 -YCYYCYCYC 2950.802097 8 0.0000 482 | 4/29
9 h-m-p 0.0000 0.0000 870.0068 ++ 2950.702256 m 0.0000 539 | 5/29
10 h-m-p 0.0000 0.0000 15777.1656 ++ 2943.364006 m 0.0000 596 | 6/29
11 h-m-p 0.0000 0.0000 11598.5413 ++ 2936.667679 m 0.0000 652 | 7/29
12 h-m-p 0.0000 0.0000 66658.5974 ++ 2927.337571 m 0.0000 707 | 8/29
13 h-m-p 0.0000 0.0000 40740.3163 ++ 2924.139737 m 0.0000 761 | 9/29
14 h-m-p 0.0000 0.0000 5096.0132 ++ 2921.387457 m 0.0000 814 | 10/29
15 h-m-p 0.0000 0.0000 2493.7660 ++ 2920.205882 m 0.0000 866 | 11/29
16 h-m-p 0.0000 0.0003 478.5297 +++ 2883.609332 m 0.0003 918 | 12/29
17 h-m-p 0.0000 0.0002 932.3160 +YYCCCC 2854.769666 5 0.0002 977 | 12/29
18 h-m-p 0.0000 0.0000 4087.2881 ++ 2837.204137 m 0.0000 1026 | 13/29
19 h-m-p 0.0002 0.0018 232.5297 +YC 2829.987002 1 0.0006 1077 | 13/29
20 h-m-p 0.0001 0.0006 610.1498 ++ 2807.261827 m 0.0006 1125 | 13/29
21 h-m-p -0.0000 -0.0000 299.2982
h-m-p: -1.98147115e-20 -9.90735574e-20 2.99298178e+02 2807.261827
.. | 13/29
22 h-m-p 0.0000 0.0001 1429.3301 +YCYCCC 2773.768319 5 0.0001 1228 | 13/29
23 h-m-p 0.0001 0.0007 653.5817 YCYC 2769.614899 3 0.0001 1280 | 13/29
24 h-m-p 0.0001 0.0006 460.7110 +YYYYYCCCCC 2740.933223 9 0.0004 1342 | 12/29
25 h-m-p 0.0002 0.0008 417.9734 CYCCC 2734.803326 4 0.0001 1397 | 12/29
26 h-m-p 0.0001 0.0005 277.1465 +CYCC 2727.073013 3 0.0004 1452 | 12/29
27 h-m-p 0.0000 0.0001 1086.2771 CCYC 2725.542682 3 0.0000 1506 | 12/29
28 h-m-p 0.0001 0.0003 241.7657 +YCYCCC 2722.373064 5 0.0002 1564 | 12/29
29 h-m-p 0.0001 0.0020 351.6125 +CYCCC 2706.049394 4 0.0010 1621 | 12/29
30 h-m-p 0.0001 0.0007 454.9052 YCCC 2701.549923 3 0.0003 1675 | 12/29
31 h-m-p 0.0002 0.0010 280.2663 YCCCC 2696.939219 4 0.0005 1731 | 12/29
32 h-m-p 0.0006 0.0031 29.4091 CCCC 2696.659848 3 0.0007 1786 | 12/29
33 h-m-p 0.0005 0.0033 39.9896 +CCC 2695.959449 2 0.0018 1840 | 12/29
34 h-m-p 0.0008 0.0041 53.9315 YCCC 2695.231625 3 0.0016 1894 | 12/29
35 h-m-p 0.0002 0.0012 111.2276 ++ 2693.663864 m 0.0012 1943 | 13/29
36 h-m-p 0.0509 1.0060 1.8015 +CCCCC 2691.147267 4 0.2426 2001 | 13/29
37 h-m-p 0.1371 0.6854 2.1084 CCCC 2689.697226 3 0.1544 2055 | 13/29
38 h-m-p 0.2271 1.1353 0.5614 YCCC 2686.373635 3 0.5764 2108 | 13/29
39 h-m-p 0.2097 1.0483 0.3327 YCCC 2684.967025 3 0.4777 2161 | 13/29
40 h-m-p 0.2166 1.0828 0.1850 +CC 2684.403803 1 0.7916 2212 | 13/29
41 h-m-p 0.3188 1.5941 0.1206 +CC 2684.111809 1 1.1975 2263 | 13/29
42 h-m-p 1.6000 8.0000 0.0685 YCC 2684.008358 2 1.1819 2314 | 13/29
43 h-m-p 0.2952 1.4761 0.0152 ++ 2683.988081 m 1.4761 2362 | 13/29
44 h-m-p -0.0000 -0.0000 0.0164
h-m-p: -2.78974181e-17 -1.39487090e-16 1.63758296e-02 2683.988081
.. | 13/29
45 h-m-p 0.0000 0.0068 8.8719 +YC 2683.984509 1 0.0001 2457 | 13/29
46 h-m-p 0.0001 0.0031 7.9733 YC 2683.983024 1 0.0001 2506 | 13/29
47 h-m-p 0.0001 0.0008 6.8738 YC 2683.982281 1 0.0001 2555 | 13/29
48 h-m-p 0.0000 0.0001 3.8656 ++ 2683.981915 m 0.0001 2603 | 14/29
49 h-m-p 0.0001 0.0256 2.7539 CC 2683.981519 1 0.0002 2653 | 14/29
50 h-m-p 0.0001 0.0079 5.1761 YC 2683.981306 1 0.0001 2701 | 14/29
51 h-m-p 0.0004 0.0613 0.7830 Y 2683.981243 0 0.0003 2748 | 14/29
52 h-m-p 0.0002 0.1174 1.5486 C 2683.981118 0 0.0003 2795 | 14/29
53 h-m-p 0.0005 0.1805 1.0208 C 2683.981037 0 0.0004 2842 | 14/29
54 h-m-p 0.0029 1.4423 0.2384 Y 2683.980986 0 0.0023 2889 | 14/29
55 h-m-p 0.0062 3.0775 0.8832 YC 2683.980715 1 0.0037 2937 | 14/29
56 h-m-p 0.0012 0.4180 2.6602 YC 2683.980557 1 0.0007 2985 | 14/29
57 h-m-p 0.0197 8.0000 0.0986 Y 2683.980497 0 0.0132 3032 | 14/29
58 h-m-p 0.0160 8.0000 0.1941 Y 2683.980325 0 0.0261 3079 | 14/29
59 h-m-p 0.1567 8.0000 0.0324 YC 2683.980289 1 0.0808 3127 | 14/29
60 h-m-p 1.6000 8.0000 0.0001 Y 2683.980277 0 0.9424 3174 | 14/29
61 h-m-p 1.6000 8.0000 0.0000 Y 2683.980277 0 0.8879 3221 | 14/29
62 h-m-p 0.5637 8.0000 0.0000 -----C 2683.980277 0 0.0001 3273
Out..
lnL = -2683.980277
3274 lfun, 13096 eigenQcodon, 235728 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -2697.507506 S = -2527.259989 -165.213605
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 228 patterns 3:18
did 20 / 228 patterns 3:18
did 30 / 228 patterns 3:18
did 40 / 228 patterns 3:18
did 50 / 228 patterns 3:18
did 60 / 228 patterns 3:18
did 70 / 228 patterns 3:18
did 80 / 228 patterns 3:18
did 90 / 228 patterns 3:18
did 100 / 228 patterns 3:18
did 110 / 228 patterns 3:18
did 120 / 228 patterns 3:19
did 130 / 228 patterns 3:19
did 140 / 228 patterns 3:19
did 150 / 228 patterns 3:19
did 160 / 228 patterns 3:19
did 170 / 228 patterns 3:19
did 180 / 228 patterns 3:19
did 190 / 228 patterns 3:19
did 200 / 228 patterns 3:19
did 210 / 228 patterns 3:19
did 220 / 228 patterns 3:19
did 228 / 228 patterns 3:19end of tree file.
Time used: 3:19
Model 7: beta
TREE # 1
(1, (((10, 13), (((3, 7), 4, 5, 6), 9)), (12, (14, 15, 8))), (11, 2)); MP score: 313
0.109339 0.051322 0.088338 0.014187 0.086681 0.081350 0.061574 0.081632 0.030937 0.014383 0.069661 0.012361 0.082406 0.029830 0.015435 0.025272 0.100721 0.089223 0.036814 0.045006 0.021408 0.067226 0.028929 0.013567 2.494195 1.016529 1.834695
ntime & nrate & np: 24 1 27
Bounds (np=27):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 7.942283
np = 27
lnL0 = -3660.618081
Iterating by ming2
Initial: fx= 3660.618081
x= 0.10934 0.05132 0.08834 0.01419 0.08668 0.08135 0.06157 0.08163 0.03094 0.01438 0.06966 0.01236 0.08241 0.02983 0.01544 0.02527 0.10072 0.08922 0.03681 0.04501 0.02141 0.06723 0.02893 0.01357 2.49419 1.01653 1.83469
1 h-m-p 0.0000 0.0000 12452.1557 ++ 2954.006548 m 0.0000 59 | 1/27
2 h-m-p 0.0000 0.0000 1056.1402 ++ 2949.695780 m 0.0000 116 | 2/27
3 h-m-p 0.0000 0.0000 5290.7829 ++ 2946.464071 m 0.0000 172 | 3/27
4 h-m-p 0.0000 0.0000 3821.6028 ++ 2924.692447 m 0.0000 227 | 4/27
5 h-m-p 0.0000 0.0001 785.6309 ++ 2904.130534 m 0.0001 281 | 5/27
6 h-m-p 0.0000 0.0000 1078.4017 ++ 2898.963421 m 0.0000 334 | 6/27
7 h-m-p 0.0000 0.0000 777.1472 ++ 2887.368055 m 0.0000 386 | 7/27
8 h-m-p 0.0000 0.0001 947.6321 ++ 2843.670771 m 0.0001 437 | 8/27
9 h-m-p 0.0000 0.0000 1347.2188 ++ 2839.520122 m 0.0000 487 | 9/27
10 h-m-p 0.0000 0.0000 3254.1574 ++ 2814.943663 m 0.0000 536 | 9/27
11 h-m-p 0.0000 0.0000 2897.8134 ++ 2810.159253 m 0.0000 584 | 10/27
12 h-m-p 0.0000 0.0000 1407.7122 ++ 2810.140078 m 0.0000 632 | 10/27
13 h-m-p -0.0000 -0.0000 1140.5896
h-m-p: -0.00000000e+00 -0.00000000e+00 1.14058962e+03 2810.140078
.. | 10/27
14 h-m-p 0.0000 0.0000 646.9038 ++ 2803.109754 m 0.0000 723 | 11/27
15 h-m-p 0.0000 0.0000 603.5539 ++ 2799.211226 m 0.0000 770 | 11/27
16 h-m-p 0.0000 0.0000 431.0404
h-m-p: 1.29867816e-22 6.49339079e-22 4.31040431e+02 2799.211226
.. | 11/27
17 h-m-p 0.0000 0.0001 526.0864 +YCCYCCC 2787.577424 6 0.0001 871 | 11/27
18 h-m-p 0.0000 0.0005 1497.9250 YYYCC 2782.075082 4 0.0000 922 | 11/27
19 h-m-p 0.0000 0.0000 457.6408 ++ 2777.120999 m 0.0000 968 | 12/27
20 h-m-p 0.0000 0.0000 1722.4023 +CYYC 2768.141360 3 0.0000 1019 | 12/27
21 h-m-p 0.0000 0.0000 796.1319 +YCYCCC 2765.483112 5 0.0000 1073 | 12/27
22 h-m-p 0.0001 0.0003 436.1556 +YCCC 2757.406317 3 0.0002 1124 | 12/27
23 h-m-p 0.0002 0.0020 563.6071 YYCCC 2749.422169 4 0.0003 1175 | 12/27
24 h-m-p 0.0004 0.0022 265.6647 +YCCCCC 2731.915221 5 0.0012 1230 | 12/27
25 h-m-p 0.0003 0.0015 585.0251 CYCCCC 2714.046384 5 0.0006 1284 | 12/27
26 h-m-p 0.0002 0.0010 169.1284 YCCCC 2710.691243 4 0.0004 1336 | 12/27
27 h-m-p 0.0012 0.0060 50.7302 YYCC 2709.344132 3 0.0011 1385 | 12/27
28 h-m-p 0.0010 0.0049 16.6001 YYC 2709.088553 2 0.0008 1432 | 12/27
29 h-m-p 0.0005 0.0026 25.1952 CYCCC 2708.619203 4 0.0008 1484 | 12/27
30 h-m-p 0.0027 0.0401 7.2614 ++ 2706.054166 m 0.0401 1529 | 12/27
31 h-m-p 0.0016 0.0121 181.9613 CCCCC 2701.586490 4 0.0030 1582 | 12/27
32 h-m-p 0.0752 0.3761 2.0877 YCYCCC 2690.177565 5 0.2008 1635 | 12/27
33 h-m-p 0.1040 0.5200 3.1097 YCYCCC 2685.710450 5 0.2777 1688 | 12/27
34 h-m-p 0.1163 0.5813 0.8154 CYCCC 2682.487685 4 0.1561 1740 | 12/27
35 h-m-p 0.3211 1.9812 0.3964 CYCC 2681.568613 3 0.4241 1790 | 12/27
36 h-m-p 0.5437 2.9374 0.3092 CCCC 2681.008651 3 0.6481 1841 | 12/27
37 h-m-p 0.9150 4.5749 0.0770 CYC 2680.494854 2 0.8546 1889 | 12/27
38 h-m-p 1.5048 8.0000 0.0437 CCC 2680.279759 2 1.4194 1938 | 12/27
39 h-m-p 1.3827 8.0000 0.0449 YCC 2680.139934 2 2.5041 1986 | 12/27
40 h-m-p 1.6000 8.0000 0.0293 CC 2680.081410 1 1.9446 2033 | 12/27
41 h-m-p 1.6000 8.0000 0.0072 YC 2680.075560 1 1.1057 2079 | 12/27
42 h-m-p 1.3731 8.0000 0.0058 C 2680.075063 0 1.1228 2124 | 12/27
43 h-m-p 1.6000 8.0000 0.0004 C 2680.075033 0 1.9574 2169 | 12/27
44 h-m-p 1.6000 8.0000 0.0002 C 2680.075031 0 1.4852 2214 | 12/27
45 h-m-p 1.6000 8.0000 0.0000 C 2680.075031 0 1.6000 2259 | 12/27
46 h-m-p 1.6000 8.0000 0.0000 Y 2680.075031 0 3.3983 2304 | 12/27
47 h-m-p 1.6000 8.0000 0.0000 C 2680.075031 0 1.6000 2349 | 12/27
48 h-m-p 1.6000 8.0000 0.0000 C 2680.075031 0 1.6000 2394 | 12/27
49 h-m-p 1.0218 8.0000 0.0000 C 2680.075031 0 1.5252 2439 | 12/27
50 h-m-p 1.6000 8.0000 0.0000 ------------C 2680.075031 0 0.0000 2496
Out..
lnL = -2680.075031
2497 lfun, 27467 eigenQcodon, 599280 P(t)
end of tree file.
Time used: 8:32
Model 8: beta&w>1
TREE # 1
(1, (((10, 13), (((3, 7), 4, 5, 6), 9)), (12, (14, 15, 8))), (11, 2)); MP score: 313
0.063432 0.096369 0.039941 0.016170 0.047157 0.031154 0.109284 0.073459 0.037325 0.043223 0.058701 0.033369 0.105476 0.025406 0.012650 0.038409 0.017321 0.056228 0.013099 0.065663 0.070703 0.104678 0.103919 0.088355 2.234063 0.900000 1.188451 1.350540 1.300000
ntime & nrate & np: 24 2 29
Bounds (np=29):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 6.498400
np = 29
lnL0 = -3723.426954
Iterating by ming2
Initial: fx= 3723.426954
x= 0.06343 0.09637 0.03994 0.01617 0.04716 0.03115 0.10928 0.07346 0.03733 0.04322 0.05870 0.03337 0.10548 0.02541 0.01265 0.03841 0.01732 0.05623 0.01310 0.06566 0.07070 0.10468 0.10392 0.08835 2.23406 0.90000 1.18845 1.35054 1.30000
1 h-m-p 0.0000 0.0000 14585.2881 ++ 2976.754907 m 0.0000 63 | 1/29
2 h-m-p 0.0000 0.0000 965.0400 ++ 2932.041146 m 0.0000 124 | 2/29
3 h-m-p 0.0000 0.0000 7575.7388 ++ 2913.506006 m 0.0000 184 | 3/29
4 h-m-p 0.0000 0.0000 13428.9749 ++ 2908.860152 m 0.0000 243 | 4/29
5 h-m-p 0.0000 0.0000 1467.9084 ++ 2881.181830 m 0.0000 301 | 5/29
6 h-m-p 0.0000 0.0000 589.1132 ++ 2868.127246 m 0.0000 358 | 6/29
7 h-m-p 0.0000 0.0000 89740.7685 ++ 2858.351160 m 0.0000 414 | 7/29
8 h-m-p 0.0000 0.0000 4867.9024 ++ 2850.924461 m 0.0000 469 | 8/29
9 h-m-p 0.0000 0.0000 6189.9516 ++ 2838.254571 m 0.0000 523 | 9/29
10 h-m-p 0.0000 0.0000 3216.3676 ++ 2822.282759 m 0.0000 576 | 10/29
11 h-m-p 0.0000 0.0000 2612.0376 ++ 2811.664214 m 0.0000 628 | 11/29
12 h-m-p 0.0000 0.0000 1549.7421 ++ 2810.225223 m 0.0000 679 | 12/29
13 h-m-p 0.0000 0.0005 182.9013 ++CCYC 2801.376871 3 0.0004 737 | 12/29
14 h-m-p 0.0001 0.0003 332.4871 ++ 2790.395142 m 0.0003 786 | 13/29
15 h-m-p 0.0001 0.0004 334.8513 +YYYYC 2785.111663 4 0.0003 840 | 13/29
16 h-m-p 0.0001 0.0004 810.4430 ++ 2762.325245 m 0.0004 888 | 13/29
17 h-m-p -0.0000 -0.0000 383.4597
h-m-p: -4.80700246e-19 -2.40350123e-18 3.83459690e+02 2762.325245
.. | 13/29
18 h-m-p 0.0000 0.0001 1012.6007 +CCCCC 2750.717678 4 0.0000 990 | 13/29
19 h-m-p 0.0000 0.0001 381.2815 +YYYYYC 2742.910962 5 0.0001 1044 | 13/29
20 h-m-p 0.0000 0.0000 2192.3591 YCCCC 2739.147410 4 0.0000 1099 | 13/29
21 h-m-p 0.0000 0.0002 508.7525 +YCC 2735.120168 2 0.0001 1151 | 13/29
22 h-m-p 0.0001 0.0007 233.2223 ++ 2720.985304 m 0.0007 1199 | 13/29
23 h-m-p 0.0001 0.0006 559.7563 +YYCCC 2707.022488 4 0.0004 1254 | 13/29
24 h-m-p 0.0003 0.0014 319.9345 YCCCCC 2696.426036 5 0.0006 1311 | 13/29
25 h-m-p 0.0001 0.0006 98.3159 YCYCCC 2695.245488 5 0.0003 1367 | 12/29
26 h-m-p 0.0001 0.0021 246.9820 +CCCCC 2689.542779 4 0.0006 1424 | 12/29
27 h-m-p 0.0004 0.0022 122.9593 CYC 2688.140527 2 0.0005 1476 | 12/29
28 h-m-p 0.0007 0.0037 54.0376 YC 2687.078418 1 0.0018 1526 | 12/29
29 h-m-p 0.0019 0.0104 52.1862 CYC 2686.818857 2 0.0005 1578 | 12/29
30 h-m-p 0.0008 0.0073 32.3353 YC 2686.708905 1 0.0004 1628 | 12/29
31 h-m-p 0.0018 0.0223 7.4897 ++ 2686.357809 m 0.0223 1677 | 13/29
32 h-m-p 0.0031 0.0154 47.2184 ++ 2683.464048 m 0.0154 1726 | 14/29
33 h-m-p 0.0575 0.2873 3.2785 YCCCC 2682.526130 4 0.1316 1781 | 14/29
34 h-m-p 0.0116 0.0578 0.4979 ++ 2681.958985 m 0.0578 1828 | 14/29
35 h-m-p 0.0016 0.0326 16.0745 CYC 2681.922706 2 0.0004 1878 | 14/29
36 h-m-p 0.0083 0.7343 0.8183 ++YCCC 2680.888686 3 0.2772 1932 | 13/29
37 h-m-p 0.0017 0.0087 45.1268 YYC 2680.720251 2 0.0014 1981 | 13/29
38 h-m-p 0.0888 0.4442 0.3271 ++ 2680.349932 m 0.4442 2029 | 13/29
39 h-m-p 0.0000 0.0000 0.2465
h-m-p: 0.00000000e+00 0.00000000e+00 2.46487509e-01 2680.349932
.. | 13/29
40 h-m-p 0.0000 0.0002 51.2491 +YYC 2680.301288 2 0.0000 2125 | 13/29
41 h-m-p 0.0001 0.0019 25.8161 YC 2680.261912 1 0.0001 2174 | 13/29
42 h-m-p 0.0000 0.0002 25.4733 YC 2680.245849 1 0.0001 2223 | 13/29
43 h-m-p 0.0000 0.0000 23.2843 ++ 2680.239945 m 0.0000 2271 | 14/29
44 h-m-p 0.0001 0.0105 8.2386 +CC 2680.233200 1 0.0003 2322 | 14/29
45 h-m-p 0.0002 0.0064 14.4647 CC 2680.228188 1 0.0002 2371 | 14/29
46 h-m-p 0.0002 0.0162 8.8575 +CC 2680.214463 1 0.0009 2421 | 14/29
47 h-m-p 0.0008 0.0283 9.6091 YC 2680.207734 1 0.0005 2469 | 14/29
48 h-m-p 0.0004 0.0287 10.4653 CC 2680.199298 1 0.0006 2518 | 14/29
49 h-m-p 0.0008 0.1185 8.1803 +CC 2680.164599 1 0.0038 2568 | 14/29
50 h-m-p 0.0005 0.0047 59.8783 CYC 2680.127864 2 0.0006 2618 | 14/29
51 h-m-p 0.0013 0.0082 25.8043 YC 2680.110322 1 0.0006 2666 | 14/29
52 h-m-p 0.0008 0.0042 14.2480 YC 2680.083264 1 0.0020 2714 | 14/29
53 h-m-p 0.0261 0.1303 0.5631 YC 2680.082243 1 0.0036 2762 | 14/29
54 h-m-p 0.0160 8.0000 0.4598 +C 2680.077080 0 0.0640 2810 | 14/29
55 h-m-p 0.4793 8.0000 0.0614 CC 2680.076386 1 0.1897 2859 | 14/29
56 h-m-p 0.8901 8.0000 0.0131 YC 2680.075074 1 0.5665 2907 | 14/29
57 h-m-p 1.6000 8.0000 0.0005 Y 2680.075070 0 1.1274 2954 | 14/29
58 h-m-p 1.6000 8.0000 0.0000 Y 2680.075070 0 1.0324 3001 | 14/29
59 h-m-p 1.6000 8.0000 0.0000 -------Y 2680.075070 0 0.0000 3055
Out..
lnL = -2680.075070
3056 lfun, 36672 eigenQcodon, 806784 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -2700.901064 S = -2535.451622 -189.341857
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 228 patterns 15:31
did 20 / 228 patterns 15:32
did 30 / 228 patterns 15:32
did 40 / 228 patterns 15:32
did 50 / 228 patterns 15:32
did 60 / 228 patterns 15:32
did 70 / 228 patterns 15:33
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did 228 / 228 patterns 15:36end of tree file.
Time used: 15:36
The loglikelihoods for models M1, M2, M7 and M8 are -2683.980277 -2683.980277 -2680.075031 -2680.075070 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus MGRMCIAMAPRTLLLLIGCQLVFGFNEPINIVSHLNDDWFLFGDSRSDCTYVENNGHPKL
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCTYVENNGHPKL
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus ------------------------------------------------------------
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus ------------------------------------------------------------
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus ------------------------------------------------------------
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus ------------------------------------------------------------
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus ------------------------------------------------------------
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCTYVENNGHPKL
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus MACTD-AMAPRTLLLVLSLGYALGFNEPLNVVSHLNDDWFLFGDSRSDCNHINNLSHQNY
MHV_S_3239_17_NA_AFD97612_1_NA_NA_Unknown_Murine_coronavirus MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCTYVENNGHPKL
Parker_HE_YP_003029847_1_NA_NA_Rat_Murine_coronavirus MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCTYVENNGHPKL
RJHM_A_NA_ACN89693_1_NA_USA_Mouse_Murine_coronavirus MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCTYVENNGHPKL
S_HE_ADI59789_1_NA_USA_Mouse_Murine_coronavirus MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIFSHLNDDWFLFGDSRSDCTYVENNGHPKL
SA59_RJHM_NA_ACN89727_1_NA_USA_Mouse_Murine_coronavirus MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCTYVENNGHPKL
UNKNOWN_AC_000192_HE_YP_209232_1_NA_NA_Unknown_Murine_coronavirus MGSTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCTYVENNGHPKL
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus DWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGDQIIFYEGVNFSPSHGFKCLV
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus DWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGDQIIFYEGVNFSPSHGFKCLV
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus ------------------------------------------------------------
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus ------------------------------------------------------------
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus ------------------------------------------------------------
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus ------------------------------------------------------------
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus ------------------------------------------------------------
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus DWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGDQIVFYEGVNFSPNHGFKCLA
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus NYMDLNPELCKSGKISAKAGNSLFKSFHFTDFYNYTGEGSQIIFYEGVNFTPYVGFKCLN
MHV_S_3239_17_NA_AFD97612_1_NA_NA_Unknown_Murine_coronavirus DWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGDQVIFYEGVNFSPSHGFKCLA
Parker_HE_YP_003029847_1_NA_NA_Rat_Murine_coronavirus DWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGDQIIFYEGVNFSPSHGFKCLV
RJHM_A_NA_ACN89693_1_NA_USA_Mouse_Murine_coronavirus DWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGDQIVFYEGVNFSPNHGFKCLA
S_HE_ADI59789_1_NA_USA_Mouse_Murine_coronavirus DWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGDQVIFYEGVNFSPSHGFKCLA
SA59_RJHM_NA_ACN89727_1_NA_USA_Mouse_Murine_coronavirus DWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGDQIVFYEGVNFSPNHGFKCLA
UNKNOWN_AC_000192_HE_YP_209232_1_NA_NA_Unknown_Murine_coronavirus DWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGDQIVFYEGVNFSPNHGFKCLA
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus EGDNNKWMGNKARFYALLYKKMAQYRSLSFVTVPYAYGGNAKPTSICKDK----TLTLNN
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus EGDNKKWMGNKARFYALLYKKMAQYRSLSFVIVPYAYGGNAKPTSICKDK----TLTLNN
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus -------MGNKARFYARVYEKMAQYRSLSFVNVSYAYGGNAKPASICKDN----TLTLNN
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus -------MGNKARFYARVYEKMAQYRSLSFVNVSYAYGGNAKPASICKDN----TLTLNN
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus -------MGNKARFYARVYEKMAQYRSLSFVNVSYAYGGNAKPASICKDN----TLTLNN
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus -------MGNKARFYARVYEKMAQYRSLSFVNVSYAYGGNAKPASICKDN----TLTLNN
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus -------MGNKARFYARVYEKMAQYRSLSFVNVSYAYGGNAKPASICKDN----TLTLNN
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus YGDNKRWMGNKARFYARVYEKMAQYRSLSFVNVPYAYGGKAKPTSICKHK----TLTLNN
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus NGDNSRWMGNKARFYTQLYQKMAHYRSLSIINITYTYNGSAGPVSMCKHTANGATLTLNN
MHV_S_3239_17_NA_AFD97612_1_NA_NA_Unknown_Murine_coronavirus YGDNKRWMGNKARFYARVYEKMAQYRSLSFVNVSYAYGGNAKPTSICKDK----TLTLNN
Parker_HE_YP_003029847_1_NA_NA_Rat_Murine_coronavirus EGDNKKWMGNKARFYALLYKKMAQYRSLSFVIVPYAYGGNAKPTSICKDK----TLTLNN
RJHM_A_NA_ACN89693_1_NA_USA_Mouse_Murine_coronavirus YGDNKRWMGNKARFYARVYEKMAQYRSLSFVNVPYAYGGKAKPTSICKHK----TLTLNN
S_HE_ADI59789_1_NA_USA_Mouse_Murine_coronavirus YGDNKRWMGNKARFYARVYEKMAQYRSLSFVNVSYAYGGNAKPTSICKDK----TLTLNN
SA59_RJHM_NA_ACN89727_1_NA_USA_Mouse_Murine_coronavirus YGDNKRWMGNKARFYARVYEKMAQYRSLSFVNVPYAYGGKAKPTSICKHK----TLTLNN
UNKNOWN_AC_000192_HE_YP_209232_1_NA_NA_Unknown_Murine_coronavirus YGDNKRWMGNKAAFYARVYEKMAQYRSLSFVNVPYAYGGKAKPTSICKHK----TLTLNN
***** **: :*:***:*****:: :.*:*.*.* *.*:**.. ******
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus PTFISKES--VDYYYVSEANFTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYN
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus PTFISKESNYVDYYYVSEANFTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYN
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus PTFISKESNYVDYYYESEANFTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYN
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus PTFISKESNYVDYYYESEANFTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYN
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus PTFISKESNYVDYYYESEANFTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYN
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus PTFISKESNYVDYYYESEANFTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYN
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus PTFISKESNYVDYYYESEANFTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYN
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus PTFISKESNYVDYYYESEANFTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYN
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus PTFIGKEASAPNYYYGSEANFTLHGCDEFIVPLCVFNGEYLSS-----KLYYDDSQYYYN
MHV_S_3239_17_NA_AFD97612_1_NA_NA_Unknown_Murine_coronavirus PTFISKESNYVDYYYESEANFTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYN
Parker_HE_YP_003029847_1_NA_NA_Rat_Murine_coronavirus PTFISKESNYVDYYYVSEANFTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYN
RJHM_A_NA_ACN89693_1_NA_USA_Mouse_Murine_coronavirus PTFISKESNYVDYYYESEANFTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYN
S_HE_ADI59789_1_NA_USA_Mouse_Murine_coronavirus PTFISKESNYVDYYYESEANFTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYN
SA59_RJHM_NA_ACN89727_1_NA_USA_Mouse_Murine_coronavirus PTFISKESNYVDYYYESEANFTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYN
UNKNOWN_AC_000192_HE_YP_209232_1_NA_NA_Unknown_Murine_coronavirus PTFISKESNYVDYYYESEANFTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYN
****.**: :*** ******* ********** ***. .* : ** *** ***
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus IDTGVLYGFNSTLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus MDTGVLYGFNSTLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus MDIGVLYGFNSTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus MDIGVLYGFNSTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus MDIGVLYGFNSTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus MDIGVLYGFNSTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus MDIGVLYGFNSTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTK
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus MDTGVLYGFNSTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus MDTGVLYGFNSTLNI-----TIGLDLTCIYLLLTPGNYKSISNELLLTMPSKAICLRKAK
MHV_S_3239_17_NA_AFD97612_1_NA_NA_Unknown_Murine_coronavirus MDTGVLYGFNSTLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
Parker_HE_YP_003029847_1_NA_NA_Rat_Murine_coronavirus MDTGVLYGFNSTLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPK
RJHM_A_NA_ACN89693_1_NA_USA_Mouse_Murine_coronavirus MDTGVLYGFNSTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
S_HE_ADI59789_1_NA_USA_Mouse_Murine_coronavirus MDTGVLYGFNSTLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
SA59_RJHM_NA_ACN89727_1_NA_USA_Mouse_Murine_coronavirus MDTGVLYGFNSTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
UNKNOWN_AC_000192_HE_YP_209232_1_NA_NA_Unknown_Murine_coronavirus MDTGVLYGLNCTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPK
:* *****:*.**:: ****** ** *******::* * **::*******:*.*
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHGDFYFRQLLSG
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHGDFYFRQLLSG
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHGDFHFRQLLSG
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHGDFHFRQLLSG
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHGDFHFRQLLSG
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHGDFHFRQLLSG
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus RFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHGDFHFRQLLSG
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHGDFHFRQLLSG
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus AFTPVQVVDSRWHSNRQSDNMTAIACQLPYCYFRNTTSDYNG-VYDSHHGDAGFTSVLAG
MHV_S_3239_17_NA_AFD97612_1_NA_NA_Unknown_Murine_coronavirus SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHGDFHFRQLLSG
Parker_HE_YP_003029847_1_NA_NA_Rat_Murine_coronavirus RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHGDFYFRQLLSG
RJHM_A_NA_ACN89693_1_NA_USA_Mouse_Murine_coronavirus RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHGDFHFRQLLSG
S_HE_ADI59789_1_NA_USA_Mouse_Murine_coronavirus SFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHGDFHFRQLLSG
SA59_RJHM_NA_ACN89727_1_NA_USA_Mouse_Murine_coronavirus RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHGDFHFRQLLSG
UNKNOWN_AC_000192_HE_YP_209232_1_NA_NA_Unknown_Murine_coronavirus RFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHGDFHFRQLLSG
* ********* * ******** *******:****:::*.* .:* **** * .:*:*
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus LLYNVSCIAQQGAFLYNNVSSIWPVYGYGHCPTAANIGYMAPVCLYDPLPVILLGVLLGI
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus LLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYMAPVCLYDPLPVILLGVLLGI
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus LLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYMAPVCIYDPLPVILLGVLLGI
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus LLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYMAPVCIYDPLPVILLGVLLGI
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus LLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYMAPVCIYDPLPVILLGVLLGI
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus LLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYMAPVCIYDPLPVILLGVLLGI
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus LLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYMAPVCIYDPLPVILLGVLLGI
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus LLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYMAPVCIYDPLPVVLLGVLLGI
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus LMYNVSCIAQQGAFVYNNVSSSWPQYPYGHCPTAANIGFIAPVCMYDPLPVILLGVLLGI
MHV_S_3239_17_NA_AFD97612_1_NA_NA_Unknown_Murine_coronavirus LLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYMAPVCIYDPLPVILLGVLLGI
Parker_HE_YP_003029847_1_NA_NA_Rat_Murine_coronavirus LLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYMAPVCLYDPLPVILLGVLLGI
RJHM_A_NA_ACN89693_1_NA_USA_Mouse_Murine_coronavirus LLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYMAPVCIYDPLPVILLGVLLGI
S_HE_ADI59789_1_NA_USA_Mouse_Murine_coronavirus LLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYMAPVCIYDPLPVILLGVLLGI
SA59_RJHM_NA_ACN89727_1_NA_USA_Mouse_Murine_coronavirus LLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYMAPVCIYDPLPVVLLGVLLGI
UNKNOWN_AC_000192_HE_YP_209232_1_NA_NA_Unknown_Murine_coronavirus LLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYMAPVCIYDPLPVVLLGVLLGI
*: *****:*****:****** ** * **:********::****:******:********
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus AVLIIVFLILYFMADSSVRLHEA
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus AVLIIVFLILYFMADSSVRLHEA
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus AVLTIVFLMFYFMTDSGVRLHEA
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus AVLIIVFLMFYFMTDSGVRLHEA
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus AVLIIVFLMFYFMTDSGVRLHEA
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus AVLIIVFLMFYFMTDSGVRLHEA
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus AVLTIVFLMFYFMTDSGVRLHEA
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus AVLIIVFLILYFMTDSGVRLHEA
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus AVLIIVFLLFYFMTDSGVRLHEI
MHV_S_3239_17_NA_AFD97612_1_NA_NA_Unknown_Murine_coronavirus AVLIIVFLMFYFMTDSGVRLHEA
Parker_HE_YP_003029847_1_NA_NA_Rat_Murine_coronavirus AVLIIVFLILYFMADSSVRLHEA
RJHM_A_NA_ACN89693_1_NA_USA_Mouse_Murine_coronavirus AVLIIVFLMFYFMTDSGVRLHEA
S_HE_ADI59789_1_NA_USA_Mouse_Murine_coronavirus AVLIIVFLMFYFMTDSGVRLHEA
SA59_RJHM_NA_ACN89727_1_NA_USA_Mouse_Murine_coronavirus AVLIIVFLILYFMTDSGVRLHEA
UNKNOWN_AC_000192_HE_YP_209232_1_NA_NA_Unknown_Murine_coronavirus AVLIIVFLILYFMTDSGVRLHEA
*** ****::***:**.*****
>681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus ATGGGCAGAATGTGCATAGCTATGGCTCCTCGCACACTGCTTTTGCTGATTGGCTGTCAGCTGGTGTTTGGGTTCAATGAACCTATTAACATCGTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTAGAAAACAATGGTCACCCTAAATTAGATTGGCTAGACCTCGACCCAAAATTGTGTAATTCAGGAAAGATAGCTGCGAAGAGTGGTAATTCTCTCTTCCGGAGTTTTCACTTTACTGATTTTTACAATTATACGGGTGAGGGAGACCAAATAATATTTTATGAAGGAGTTAATTTTAGTCCCAGCCATGGATTTAAATGCCTGGTTGAAGGAGATAATAATAAGTGGATGGGCAATAAAGCTCGATTTTATGCCCTATTGTACAAGAAGATGGCCCAATATAGGAGCCTATCTTTTGTTACTGTGCCTTATGCCTATGGAGGTAACGCCAAGCCCACCTCCATTTGTAAAGACAAA------------ACTTTAACACTCAATAATCCCACCTTCATTTCGAAGGAATCT------GTTGATTATTACTATGTGAGTGAGGCTAATTTCACACTACAAGGTTGTGATGAATTCATAGTCCCGCTCTGTGTTTTTAATGGTCATTCCAGGGGCAGTTCTTCGGATCCTGCCAACAAATATTATACTGACTCTCAGAGTTACTATAATATTGATACTGGTGTCCTATATGGCTTCAATTCGACCTTGGATGTAGGCAACACTGCTCAGAATCCAGGTCTTGATCTCACTTGTATGTATCTTGTTTTAACTCCCGGTAATTATAAGGCAGTGTCCTTAGAATATTTGTTAACTATACCCTCAAAGGCTATCTGTCTTCGTAAGCCTAAGCGCTTTATGCCTGTGCAGGTAGTAGATTCAAGGTGGAATAGTACCCGTCAGTCTGACAATATGACCGCTGTAGCCTGTCAGCTGCCATATTGTTTCTTCCGCAATACTTCTGCGGATTATAGTGGTGATACACATGATGTACACCATGGTGATTTTTATTTCAGGCAGTTATTGTCTGGGTTGCTTTATAATGTGTCCTGTATTGCCCAACAGGGTGCATTTCTTTATAATAATGTTAGCTCCATCTGGCCAGTTTATGGCTATGGCCACTGTCCAACTGCTGCTAATATTGGTTATATGGCACCCGTTTGTCTTTATGACCCCCTACCGGTCATATTACTAGGTGTCTTATTGGGTATAGCTGTGTTAATTATTGTTTTTCTTATTTTGTATTTTATGGCGGATAGCAGTGTTAGGTTGCATGAGGCC >8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus ATGGGCAGAATGTGCATAGCTATGGCTCCTCGCACACTGCTTTTGCTGATTGGCTGTCAGCTGGTGTTAGGGTTCAATGAACCTATTAACATCGTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTAGAAAACAATGGTCACCCTAAATTAGATTGGCTAGACCTCGACCCAAAATTGTGTAATTCAGGAAAGATAGCTGCGAAGAGTGGTAATTCTCTCTTCCGGAGTTTTCACTTTACTGATTTTTACAATTATACGGGTGAGGGAGACCAAATAATATTTTATGAAGGAGTTAATTTTAGTCCCAGCCATGGATTTAAATGCCTGGTTGAAGGAGATAATAAAAAGTGGATGGGCAATAAAGCTCGATTTTATGCCCTATTGTACAAGAAGATGGCCCAATATAGGAGCCTATCTTTTGTTATTGTGCCTTATGCCTATGGAGGTAACGCCAAGCCCACCTCCATTTGCAAAGACAAA------------ACTTTAACACTCAATAATCCCACCTTCATTTCGAAGGAATCTAATTATGTTGATTATTACTATGTGAGTGAGGCTAATTTCACACTACAAGGTTGTGATGAATTCATAGTCCCGCTCTGTGTTTTTAATGGTCATTCCAGGGGCAGTTCTTCGGATCCTGCCAACAAATATTATACTGACTCTCAGAGTTACTATAATATGGATACTGGTGTCCTATATGGCTTCAATTCGACCTTGGATGTAGGCAACACTGCTCAGAATCCAGGTCTTGATCTCACTTGTATGTATCTTGTTTTAACTCCCGGTAATTATAAGGCAGTGTCCTTAGAATATTTGTTAACTATACCCTCAAAGGCTATCTGTCTTCGTAAGCCTAAGCGCTTTATGCCTGTGCAGGTAGTAGATTCAAGGTGGAATAGCACCCGTCAGTCTGACAATATGACCGCTGTAGCCTGTCAGCTGCCATATTGTTTCTTCCGCAATACTTCTGCGGATTATAGTGGTGATACACATGATGTACACCATGGTGATTTTTATTTCAGGCAGTTATTGTCTGGTTTGCTTTATAATGTGTCCTGTATTTCCCAACAGGGTGCATTTCTTTATAATAATGTTAGCTCCATCTGGCCAGTTTATGGCTATGGCCACTGTCCAACTGCTGCTAACATTGGTTATATGGCACCCGTTTGTCTTTATGACCCCCTACCGGTCATATTACTAGGTGTCTTATTGGGTATAGCTGTGTTAATTATTGTTTTTCTTATTTTGTATTTTATGGCGGATAGCAGTGTTAGGTTGCATGAGGCC >A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCGTTTGTTAATGTGTCTTATGCCTATGGAGGTAATGCAAAGCCCGCCTCCATTTGCAAAGACAAT------------ACTTTAACACTCAATAACCCCACCTTCATATCGAAGGAGTCTAATTATGTTGATTATTACTATGAGAGTGAGGCTAATTTCACACTAGAAGGTTGTGATGAATTTATAGTACCGCTCTGTGGTTTTAATGGCCATTCCAAGGGCAGCTCTTCGGATGCTGCCAATAAATATTATACTGACTCTCAGAGTTACTATAATATGGATATTGGTGTCTTATATGGGTTCAATTCGACCTTGGATGTTGGCAACACTGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAATATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCATAAGACAAAGCGCTTTATGCCTGTGCAGGTAGTTGACTCAAGGTGGAGTAGCATCCGCCAGTCAGACAATATGACCGCTGCAGCCTGTCAGCTGCCATATTGTTTCTTTCGCAACACATCTGCGAATTATAGTGGTGGCACACATGATGCGCACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTATATAATGTTTCCTGTATTGCCCAGCAGGGTGCATTTCTTTATAATAATGTTAGTTCCTCTTGGCCAGCCTATGGGTACGGTCATTGTCCAACGGCAGCTAACATTGGTTATATGGCACCTGTTTGTATCTATGACCCTCTCCCGGTCATACTGCTAGGTGTGTTATTGGGTATAGCTGTGTTGACTATTGTGTTTTTGATGTTTTATTTTATGACGGATAGCGGTGTTAGATTGCATGAGGCA >MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCGTTTGTTAATGTGTCTTATGCCTATGGAGGTAATGCAAAGCCCGCCTCCATTTGCAAAGACAAT------------ACTTTAACACTCAATAACCCCACCTTCATATCGAAGGAGTCTAATTATGTTGATTATTACTATGAGAGTGAGGCTAATTTCACACTAGAAGGTTGTGATGAATTTATAGTACCGCTCTGTGGTTTTAATGGCCATTCCAAGGGCAGCTCTTCGGATGCTGCCAATAAATATTATACTGACTCTCAGAGTTACTATAATATGGATATTGGTGTCTTATATGGGTTCAATTCGACCTTGGATGTTGGCAACACTGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAGTATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCATAAGACAAAGCGCTTTATGCCTGTGCAGGTAGTTGACTCAAGGTGGAGTAGCATCCGCCAGTCAGACAATATGACCGCTGCAGCCTGTCAGCTGCCATATTGTTTCTTTCGCAACACATCTGCGAATTATAGTGGTGGCACACATGATGCGCACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTATATAATGTTTCCTGTATTGCCCAGCAGGGTGCATTTCTTTATAATAATGTTAGTTCCTCTTGGCCAGCCTATGGGTACGGTCATTGTCCAACGGCAGCTAACATTGGTTATATGGCACCTGTTTGTATCTATGACCCTCTCCCGGTCATACTGCTAGGTGTGTTATTGGGTATAGCTGTGTTGATTATTGTGTTTTTGATGTTTTATTTTATGACGGATAGCGGTGTTAGATTGCATGAGGCA >MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCGTTTGTTAATGTGTCTTATGCCTATGGAGGTAATGCAAAGCCCGCCTCCATTTGCAAAGACAAT------------ACTTTAACACTCAATAACCCCACCTTCATATCGAAGGAGTCTAATTATGTTGATTATTACTATGAGAGTGAGGCTAATTTCACACTAGAAGGTTGTGATGAATTTATAGTACCGCTCTGTGGTTTTAATGGCCATTCCAAGGGCAGCTCTTCGGATGCTGCCAATAAATATTATACTGACTCTCAGAGTTACTATAATATGGATATTGGTGTCTTATATGGGTTCAATTCGACCTTGGATGTTGGCAACACTGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAGTATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCATAAGACAAAGCGCTTTATGCCTGTGCAGGTAGTTGACTCAAGGTGGAGTAGCATCCGCCAGTCAGACAATATGACCGCTGCAGCCTGTCAGCTGCCATATTGTTTCTTTCGCAACACATCTGCGAATTATAGTGGTGGCACACATGATGCGCACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTATATAATGTTTCCTGTATTGCCCAGCAGGGTGCATTTCTTTATAATAATGTTAGTTCCTCTTGGCCAGCCTATGGGTACGGTCATTGTCCAACGGCAGCTAACATTGGTTATATGGCACCTGTTTGTATCTATGACCCTCTCCCGGTCATACTGCTAGGTGTGTTATTGGGTATAGCTGTGTTGATTATTGTGTTTTTGATGTTTTATTTTATGACGGATAGCGGTGTTAGATTGCATGAGGCA >MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCGTTTGTTAATGTGTCTTATGCCTATGGAGGTAATGCAAAGCCCGCCTCCATTTGCAAAGACAAT------------ACTTTAACACTCAATAACCCCACCTTCATATCGAAGGAGTCTAATTATGTTGATTATTACTATGAGAGTGAGGCTAATTTCACACTAGAAGGTTGTGATGAATTTATAGTACCGCTCTGTGGTTTTAATGGCCATTCCAAGGGCAGCTCTTCGGATGCTGCCAATAAATATTATACTGACTCTCAGAGTTACTATAATATGGATATTGGTGTCTTATATGGGTTCAATTCGACCTTGGATGTTGGCAACACTGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAGTATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCATAAGACAAAGCGCTTTATGCCTGTGCAGGTAGTTGACTCAAGGTGGAGTAGCATCCGCCAGTCAGACAATATGACCGCTGCAGCCTGTCAGCTGCCATATTGTTTCTTTCGCAACACATCTGCGAATTATAGTGGTGGCACACATGATGCGCACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTATATAATGTTTCCTGTATTGCCCAGCAGGGTGCATTTCTTTATAATAATGTTAGTTCCTCTTGGCCAGCCTATGGGTACGGTCATTGTCCAACGGCAGCTAACATTGGTTATATGGCACCTGTTTGTATCTATGACCCTCTCCCGGTCATACTGCTAGGTGTGTTATTGGGTATAGCTGTGTTGATTATTGTGTTTTTGATGTTTTATTTTATGACGGATAGCGGTGTTAGATTGCATGAGGCA >MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCGTTTGTTAATGTGTCTTATGCCTATGGAGGTAATGCAAAGCCCGCCTCCATTTGCAAAGACAAT------------ACTTTAACACTCAATAACCCCACCTTCATATCGAAGGAGTCTAATTATGTTGATTATTACTATGAGAGTGAGGCTAATTTCACACTAGAAGGTTGTGATGAATTTATAGTACCGCTCTGTGGTTTTAATGGCCATTCCAAGGGCAGCTCTTCGGATGCTGCCAATAAATATTATACTGACTCTCAGAGTTACTATAATATGGATATTGGTGTCTTATATGGGTTCAATTCGACCTTGGATGTTGGCAACACTGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAATATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCATAAGACAAAGCGCTTTATGCCTGTGCAGGTAGTTGACTCAAGGTGGAGTAGCATCCGCCAGTCAGACAATATGACCGCTGCAGCCTGTCAGCTGCCATATTGTTTCTTTCGCAACACATCTGCGAATTATAGTGGTGGCACACATGATGCGCACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTATATAATGTTTCCTGTATTGCCCAGCAGGGTGCATTTCTTTATAATAATGTTAGTTCCTCTTGGCCAGCCTATGGGTACGGTCATTGTCCAACGGCAGCTAACATTGGTTATATGGCACCTGTTTGTATCTATGACCCTCTCCCGGTCATACTGCTAGGTGTGTTATTGGGTATAGCTGTGTTGACTATTGTGTTTTTGATGTTTTATTTTATGACGGATAGCGGTGTTAGATTGCATGAGGCA >MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus ATGGGCAGGACGTGCATAGCTATGGCTCCTCGCACACTGCTTTTGCTGATTGGCTGTCAGCTGGTGTTTGGGTTCAATGAACCTCTTAACATCGTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTAGAAAATAACGGTCATCCTAAATTAGATTGGCTAGACCTTGACCCAAAATTGTGTAATTCAGGAAAGATTTCTGCGAAGAGTGGTAACTCTCTCTTCCGGAGTTTTCACTTCACTGATTTTTACAATTATACGGGTGAGGGAGACCAAATTGTATTTTATGAAGGAGTTAATTTTAGTCCCAACCATGGCTTTAAATGCCTGGCTTATGGAGATAATAAAAGATGGATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCCTTTGTTAATGTGCCTTATGCCTATGGGGGTAAAGCCAAGCCCACCTCCATTTGCAAACATAAA------------ACTTTAACACTCAACAACCCCACCTTCATCTCGAAGGAGTCCAATTATGTTGATTATTATTACGAGAGTGAGGCTAATTTCACACTAGCAGGTTGTGATGAATTTATAGTACCGCTCTGTGTTTTTAATGGCCACTCCAAGGGCAGTTCTTCGGACCCTGCCAACAAATATTATATGGACTCGCAGAGTTACTATAATATGGATACTGGTGTCTTATATGGGTTCAACTCCACTTTGGATGTTGGCAATACCGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAATATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCGTAAGCCAAAGCGCTTTATGCCTGTGCAGGTAGTGGATTCAAGGTGGAATAGTACCCGCCAGTCTGACAATATGACCGCTGTAGCTTGTCAGCTGCCATATTGCTTTTTCCGCAATACATCTGCGGATTATAGTGGTGGTACGCATGATGTACACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTACTTAATGTTTCCTGTATCGCCCAGCAGGGTGCATTTCTTTATAATAACGTTAGCTCCTCTTGGCCAGCCTATGGGTATGGCCAGTGTCCAACGGCTGCTAACATTGGTTATATGGCACCTGTTTGTATTTATGACCCATTACCGGTCGTATTACTCGGTGTCTTATTGGGTATAGCTGTGTTAATTATTGTTTTTCTTATTTTGTATTTCATGACGGATAGCGGTGTTAGATTGCATGAGGCA >MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus ATGGCGTGCACAGAT---GCAATGGCACCGCGCACGCTATTATTGGTCTTATCTCTTGGTTATGCATTGGGGTTCAATGAACCTCTTAATGTTGTTTCACATTTAAATGATGACTGGTTTCTTTTTGGCGACAGTAGGTCTGACTGCAACCACATAAATAATCTCAGCCATCAGAATTATAATTATATGGACCTCAACCCAGAATTGTGTAAGTCGGGCAAGATTTCTGCTAAAGCGGGTAATTCCCTCTTTAAAAGTTTTCATTTTACCGACTTCTACAATTATACTGGTGAGGGGTCTCAAATTATATTTTATGAAGGAGTTAATTTTACCCCGTATGTGGGGTTTAAGTGTTTGAATAATGGTGATAATAGTAGGTGGATGGGTAATAAAGCTCGATTTTATACCCAGTTGTATCAGAAGATGGCCCATTATCGGAGCTTGTCTATAATTAATATTACTTATACATATAATGGCAGTGCTGGTCCTGTCTCTATGTGTAAGCATACTGCTAATGGTGCCACTCTGACCTTAAATAACCCTACCTTTATAGGTAAGGAGGCTAGTGCACCTAATTATTATTACGGGAGTGAGGCAAATTTTACACTGCACGGTTGCGATGAGTTTATTGTTCCACTCTGTGTTTTTAATGGCGAGTATCTGTCTAGT---------------AAGTTGTATTATGATGATAGTCAATATTACTATAATATGGATACTGGCGTTTTATACGGGTTTAACTCAACTTTGAATATT---------------ACTATCGGTTTGGATTTAACCTGTATTTATCTCTTATTAACTCCTGGTAATTATAAATCTATCTCTAATGAGTTGTTGCTTACTATGCCCTCAAAAGCTATTTGCCTGCGTAAAGCCAAGGCGTTTACGCCTGTGCAAGTGGTTGATTCTAGATGGCATAGTAATAGGCAATCTGATAATATGACAGCTATAGCCTGTCAATTACCATATTGCTACTTTCGTAACACCACTAGTGATTATAATGGT---GTTTATGATTCGCATCATGGGGATGCGGGTTTTACCAGTGTCTTGGCTGGTCTTATGTATAATGTCTCCTGTATAGCCCAGCAGGGTGCATTTGTTTATAACAATGTTAGTAGCAGTTGGCCACAGTATCCCTATGGACACTGTCCCACGGCAGCTAACATTGGATTTATAGCACCTGTTTGCATGTACGACCCCTTACCGGTCATATTGCTCGGTGTATTATTGGGTATAGCTGTGTTGATTATTGTGTTTTTGTTGTTCTATTTTATGACGGACAGCGGTGTTAGATTGCATGAAATA >MHV_S_3239_17_NA_AFD97612_1_NA_NA_Unknown_Murine_coronavirus ATGGGCTGTATGTGCATAGCTATGGCTCCTCGCACACTGCTCTTGCTGATTGGCTGTCAGCTGGTGTTTGGGTTCAATGAACCTCTTAACATCGTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTGGAAAATAACGGTCATCCTAAATTAGATTGGCTTGATCTTGACCCGAAATTGTGTAATTCAGGAAGAATTTCCGCAAAGAGTGGCAACTCTCTCTTTAGGAGTTTCCATTTTATTGATTTTTACAATTATTCAGGAGAAGGCGACCAAGTTATATTTTATGAAGGAGTTAATTTTAGTCCCAGCCATGGCTTTAAATGCCTGGCTTATGGAGATAATAAAAGATGGATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCCTTTGTTAATGTGTCTTATGCCTATGGAGGTAATGCTAAGCCTACTTCCATTTGCAAGGACAAA------------ACTTTAACACTCAACAACCCCACCTTCATTTCGAAGGAGTCCAATTATGTTGATTATTATTACGAGAGTGAGGCTAATTTCACACTACAAGGTTGTGATGAATTTATAGTACCGCTCTGCGTTTTTAATGGCCATTCCAAGGGCAGCTCTTCGGATCCTGCCAATAAATATTATACTGACTCTCAGAGTTACTATAATATGGATACCGGTGTTTTATATGGGTTCAATTCGACCTTGGATGTTGGCAATACTGTACAAAATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAGTATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCGTAAGCCAAAGAGCTTCATGCCTGTGCAGGTAGTGGATTCAAGGTGGAATAGTACCCGCCAGTCAGACAATATGACTGCTGTAGCTTGTCAGCTGCCATATTGCTTTTTCCGCAACACATCTGCGGATTATAGTGGTGGTACACATGATGTACACCATGGTGATTTTCACTTCAGGCAGTTATTGTCTGGTTTGCTATATAATGTTTCCTGTATTGCCCAACAGGGTGCATTTGTTTACAATAATGTTAGCTCCTCTTGGCCAGCCTATGGGTACGGTCATTGTCCAACGGCAGCTAACATTGGTTATATGGCGCCTGTTTGTATCTATGACCCCCTTCCGGTCATACTGCTAGGTGTATTATTGGGTATAGCTGTGTTGATTATTGTGTTTTTGATGTTTTATTTTATGACGGATAGCGGTGTTAGATTGCATGAGGCA >Parker_HE_YP_003029847_1_NA_NA_Rat_Murine_coronavirus ATGGGCAGAATGTGCATAGCTATGGCTCCTCGCACACTGCTTTTGCTGATTGGCTGTCAGCTGGTGTTAGGGTTCAATGAACCTATTAACATCGTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTAGAAAACAATGGTCACCCTAAATTAGATTGGCTAGACCTCGACCCAAAATTGTGTAATTCAGGAAAGATAGCTGCGAAGAGTGGTAATTCTCTCTTCCGGAGTTTTCACTTTACTGATTTTTACAATTATACGGGTGAGGGAGACCAAATAATATTTTATGAAGGAGTTAATTTTAGTCCCAGCCATGGATTTAAATGCCTGGTTGAAGGAGATAATAAAAAGTGGATGGGCAATAAAGCTCGATTTTATGCCCTATTGTACAAGAAGATGGCCCAATATAGGAGCCTATCTTTTGTTATTGTGCCTTATGCCTATGGAGGTAACGCCAAGCCCACCTCCATTTGCAAAGACAAA------------ACTTTAACACTCAATAATCCCACCTTCATTTCGAAGGAATCTAATTATGTTGATTATTACTATGTGAGTGAGGCTAATTTCACACTACAAGGTTGTGATGAATTCATAGTCCCGCTCTGTGTTTTTAATGGTCATTCCAGGGGCAGTTCTTCGGATCCTGCCAACAAATATTATACTGACTCTCAGAGTTACTATAATATGGATACTGGTGTCCTATATGGCTTCAATTCGACCTTGGATGTAGGCAACACTGCTCAGAATCCAGGTCTTGATCTCACTTGTATGTATCTTGTTTTAACTCCCGGTAATTATAAGGCAGTGTCCTTAGAATATTTGTTAACTATACCCTCAAAGGCTATCTGTCTTCGTAAGCCTAAGCGCTTTATGCCTGTGCAGGTAGTAGATTCAAGGTGGAATAGCACCCGTCAGTCTGACAATATGACCGCTGTAGCCTGTCAGCTGCCATATTGTTTCTTCCGCAATACTTCTGCGGATTATAGTGGTGATACACATGATGTACACCATGGTGATTTTTATTTCAGGCAGTTATTGTCTGGTTTGCTTTATAATGTGTCCTGTATTTCCCAACAGGGTGCATTTCTTTATAATAATGTTAGCTCCATCTGGCCAGTTTATGGCTATGGCCACTGTCCAACTGCTGCTAACATTGGTTATATGGCACCCGTTTGTCTTTATGACCCCCTACCGGTCATATTACTAGGTGTCTTATTGGGTATAGCTGTGTTAATTATTGTTTTTCTTATTTTGTATTTTATGGCGGATAGCAGTGTTAGGTTGCATGAGGCC >RJHM_A_NA_ACN89693_1_NA_USA_Mouse_Murine_coronavirus ATGGGCAGGACGTGCATAGCTATGGCTCCTCGCACACTGCTTTTGCTGATTGGCTGTCAGCTGGTGTTTGGGTTCAATGAACCTCTTAACATCGTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTAGAAAATAACGGTCATCCTAAATTAGATTGGCTAGACCTTGACCCAAAATTGTGTAATTCAGGAAAGATTTCTGCGAAGAGTGGTAACTCTCTCTTCCGGAGTTTTCACTTCACTGATTTTTACAATTATACGGGTGAGGGAGACCAAATTGTATTTTATGAAGGAGTTAATTTTAGTCCCAACCATGGCTTTAAATGCCTGGCTTATGGAGATAATAAAAGATGGATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCCTTTGTTAATGTGCCTTATGCCTATGGGGGTAAAGCCAAGCCCACCTCCATTTGCAAACATAAA------------ACTTTAACACTCAACAACCCCACCTTCATCTCGAAGGAGTCCAATTATGTTGATTATTATTACGAGAGTGAGGCTAATTTCACACTAGCAGGTTGTGATGAATTTATAGTACCGCTCTGTGTTTTTAATGGCCACTCCAAGGGCAGTTCTTCGGACCCTGCCAACAAATATTATATGGACTCGCAGAGTTACTATAATATGGATACTGGTGTCTTATATGGGTTCAACTCCACTTTGGATGTTGGCAATACCGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAATATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCGTAAGCCAAAGCGCTTTATGCCTGTGCAGGTAGTGGATTCAAGGTGGAATAGTACCCGCCAGTCTGACAATATGACCGCTGTAGCTTGTCAGCTGCCATATTGCTTTTTCCGCAATACATCTGCGGATTATAGTGGTGGTACGCATGATGTACACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTACTTAATGTTTCCTGTATCGCCCAGCAGGGTGCATTTCTTTATAATAACGTTAGCTCCTCTTGGCCAGCCTATGGGTATGGCCAGTGTCCAACGGCAGCTAACATTGGTTATATGGCACCTGTTTGTATCTATGACCCTCTCCCGGTCATACTGCTAGGTGTGTTATTGGGTATAGCTGTGTTGATTATTGTGTTTTTGATGTTTTATTTCATGACGGATAGCGGTGTTAGATTGCATGAGGCA >S_HE_ADI59789_1_NA_USA_Mouse_Murine_coronavirus ATGGGCTGTATGTGCATAGCTATGGCTCCTCGCACACTGCTCTTGCTGATTGGCTGTCAGCTGGTGTTTGGGTTCAATGAACCTCTTAACATCTTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTGGAAAATAACGGTCATCCTAAATTAGATTGGCTTGATCTTGACCCGAAATTGTGTAATTCAGGAAGAATTTCCGCAAAGAGTGGCAACTCTCTCTTTAGGAGTTTCCATTTTATTGATTTTTACAATTATTCAGGAGAAGGCGACCAAGTTATATTTTATGAAGGAGTTAATTTTAGTCCCAGCCATGGCTTTAAATGCCTGGCTTATGGAGATAATAAAAGATGGATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCCTTTGTTAATGTGTCTTATGCCTATGGAGGTAATGCTAAGCCTACTTCCATTTGCAAGGACAAA------------ACTTTAACACTCAACAACCCCACCTTCATTTCGAAGGAGTCCAATTATGTTGATTATTATTACGAGAGTGAGGCTAATTTCACACTACAAGGTTGTGATGAATTTATAGTACCGCTCTGCGTTTTTAATGGCCATTCCAAGGGCAGCTCTTCGGATCCTGCCAATAAATATTATACTGACTCTCAGAGTTACTATAATATGGATACCGGTGTTTTATATGGGTTCAATTCGACCTTGGATGTTGGCAATACTGTACAAAATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAGTATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCGTAAGCCAAAGAGCTTCATGCCTGTGCAGGTAGTGGATTCAAGGTGGAATAGTACCCGCCAGTCAGACAATATGACTGCTGTAGCTTGTCAGCTGCCATATTGCTTTTTCCGCAACACATCTGCGGATTATAGTGGTGGTACACATGATGTACACCATGGTGATTTTCACTTCAGGCAGTTATTGTCTGGTTTGCTATATAATGTTTCCTGTATTGCCCAACAGGGTGCATTTGTTTACAATAATGTTAGCTCCTCTTGGCCAGCCTATGGGTACGGTCATTGTCCAACGGCAGCTAACATTGGTTATATGGCGCCTGTTTGTATCTATGACCCCCTTCCGGTCATACTGCTAGGTGTATTATTGGGTATAGCTGTGTTGATTATTGTGTTTTTGATGTTTTATTTTATGACGGATAGCGGTGTTAGATTGCATGAGGCA >SA59_RJHM_NA_ACN89727_1_NA_USA_Mouse_Murine_coronavirus ATGGGCAGGACGTGCATAGCTATGGCTCCTCGCACACTGCTTTTGCTGATTGGCTGTCAGCTGGTGTTTGGGTTCAATGAACCTCTTAACATCGTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTAGAAAATAACGGTCATCCTAAATTAGATTGGCTAGACCTTGACCCAAAATTGTGTAATTCAGGAAAGATTTCTGCGAAGAGTGGTAACTCTCTCTTCCGGAGTTTTCACTTCACTGATTTTTACAATTATACGGGTGAGGGAGACCAAATTGTATTTTATGAAGGAGTTAATTTTAGTCCCAACCATGGCTTTAAATGCCTGGCTTATGGAGATAATAAAAGATGGATGGGCAATAAAGCTCGATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCCTTTGTTAATGTGCCTTATGCCTATGGGGGTAAAGCCAAGCCCACCTCCATTTGCAAACATAAA------------ACTTTAACACTCAACAACCCCACCTTCATCTCGAAGGAGTCCAATTATGTTGATTATTATTACGAGAGTGAGGCTAATTTCACACTAGCAGGTTGTGATGAATTTATAGTACCGCTCTGTGTTTTTAATGGCCACTCCAAGGGCAGTTCTTCGGACCCTGCCAACAAATATTATATGGACTCGCAGAGTTACTATAATATGGATACTGGTGTCTTATATGGGTTCAACTCCACTTTGGATGTTGGCAATACCGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAATATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCGTAAGCCAAAGCGCTTTATGCCTGTGCAGGTAGTGGATTCAAGGTGGAATAGTACCCGCCAGTCTGACAATATGACCGCTGTAGCTTGTCAGCTGCCATATTGCTTTTTCCGCAATACATCTGCGGATTATAGTGGTGGTACGCATGATGTACACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTACTTAATGTTTCCTGTATCGCCCAGCAGGGTGCATTTCTTTATAATAACGTTAGCTCCTCTTGGCCAGCCTATGGGTATGGCCAGTGTCCAACGGCTGCTAACATTGGTTATATGGCACCTGTTTGTATTTATGACCCATTACCGGTCGTATTACTCGGTGTCTTATTGGGTATAGCTGTGTTAATTATTGTTTTTCTTATTTTGTATTTCATGACGGATAGCGGTGTTAGATTGCATGAGGCA >UNKNOWN_AC_000192_HE_YP_209232_1_NA_NA_Unknown_Murine_coronavirus ATGGGCAGTACGTGCATAGCTATGGCTCCTCGCACACTGCTTTTGCTGATTGGCTGTCAGCTGGTGTTTGGGTTCAATGAACCTCTTAACATCGTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTATGTAGAAAATAACGGTCATCCTAAATTAGATTGGCTAGACCTTGACCCAAAATTGTGTAATTCAGGAAAGATTTCTGCGAAGAGTGGTAACTCTCTCTTCCGGAGTTTTCACTTCACTGATTTTTACAATTATACGGGTGAGGGAGACCAAATTGTATTTTATGAAGGAGTTAATTTTAGTCCCAACCATGGCTTTAAATGCCTGGCTTATGGAGATAATAAAAGATGGATGGGCAATAAAGCTGCATTTTATGCCCGAGTGTATGAGAAGATGGCCCAATATAGGAGCCTATCCTTTGTTAATGTGCCTTATGCCTATGGGGGTAAAGCCAAGCCCACCTCCATTTGCAAACATAAA------------ACTTTAACACTCAACAACCCCACCTTCATCTCGAAGGAGTCCAATTATGTTGATTATTATTACGAGAGTGAGGCTAATTTCACACTAGCAGGTTGTGATGAATTTATAGTACCGCTCTGTGTTTTCAATGGCCACTCCAAGGGCAGTTCTTCGGACCCTGCCAACAAATATTATATGGACTCGCAGAGTTACTATAATATGGATACTGGTGTCTTATATGGGTTGAACTGCACTTTGGATGTTGGCAATACCGCTAAGGATCCGGGTCTTGATCTCACTTGTAGGTATCTTGCATTGACTCCTGGTAATTATAAGGCTGTGTCCTTAGAATATTTGTTAAGCTTACCCTCAAAGGCTATTTGCCTCCGTAAGCCAAAGCGCTTTATGCCTGTGCAGGTAGTGGATTCAAGGTGGAATAGTACCCGCCAGTCTGACAATATGACCGCTGTAGCTTGTCAGCTGCCATATTGCTTTTTCCGCAATACATCTGCGGATTATAGTGGTGGTACGCATGATGTACACCATGGTGATTTTCATTTCAGGCAGTTATTGTCTGGTTTGTTACTTAATGTTTCCTGTATCGCCCAGCAGGGTGCATTTCTTTATAATAACGTTAGCTCCTCTTGGCCAGCCTATGGGTATGGCCAGTGTCCAACGGCTGCTAACATTGGTTATATGGCACCTGTTTGTATTTATGACCCATTACCGGTCGTATTACTCGGTGTCTTATTGGGTATAGCTGTGTTAATTATTGTTTTTCTTATTTTGTATTTCATGACGGATAGCGGTGTTAGATTGCATGAGGCA
>681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus MGRMCIAMAPRTLLLLIGCQLVFGFNEPINIVSHLNDDWFLFGDSRSDCTYVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGDQIIFYEGVNFSPSHGFKCLVEGDNNKWMGNKARFYALLYKKMAQYRSLSFVTVPYAYGGNAKPTSICKDK----TLTLNNPTFISKES--VDYYYVSEANFTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNIDTGVLYGFNSTLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPKRFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHGDFYFRQLLSGLLYNVSCIAQQGAFLYNNVSSIWPVYGYGHCPTAANIGYMAPVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA >8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCTYVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGDQIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSFVIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEANFTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFNSTLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPKRFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHGDFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYMAPVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA >A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus -------------------------------------------------------------------------------------------------------------------------------MGNKARFYARVYEKMAQYRSLSFVNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEANFTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFNSTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTKRFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHGDFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYMAPVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA >MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus -------------------------------------------------------------------------------------------------------------------------------MGNKARFYARVYEKMAQYRSLSFVNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEANFTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFNSTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTKRFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHGDFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYMAPVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA >MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus -------------------------------------------------------------------------------------------------------------------------------MGNKARFYARVYEKMAQYRSLSFVNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEANFTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFNSTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTKRFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHGDFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYMAPVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA >MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus -------------------------------------------------------------------------------------------------------------------------------MGNKARFYARVYEKMAQYRSLSFVNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEANFTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFNSTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTKRFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHGDFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYMAPVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA >MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus -------------------------------------------------------------------------------------------------------------------------------MGNKARFYARVYEKMAQYRSLSFVNVSYAYGGNAKPASICKDN----TLTLNNPTFISKESNYVDYYYESEANFTLEGCDEFIVPLCGFNGHSKGSSSDAANKYYTDSQSYYNMDIGVLYGFNSTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLHKTKRFMPVQVVDSRWSSIRQSDNMTAAACQLPYCFFRNTSANYSGGTHDAHHGDFHFRQLLSGLLYNVSCIAQQGAFLYNNVSSSWPAYGYGHCPTAANIGYMAPVCIYDPLPVILLGVLLGIAVLTIVFLMFYFMTDSGVRLHEA >MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCTYVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGDQIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSFVNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEANFTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFNSTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPKRFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHGDFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYMAPVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA >MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus MACTD-AMAPRTLLLVLSLGYALGFNEPLNVVSHLNDDWFLFGDSRSDCNHINNLSHQNYNYMDLNPELCKSGKISAKAGNSLFKSFHFTDFYNYTGEGSQIIFYEGVNFTPYVGFKCLNNGDNSRWMGNKARFYTQLYQKMAHYRSLSIINITYTYNGSAGPVSMCKHTANGATLTLNNPTFIGKEASAPNYYYGSEANFTLHGCDEFIVPLCVFNGEYLSS-----KLYYDDSQYYYNMDTGVLYGFNSTLNI-----TIGLDLTCIYLLLTPGNYKSISNELLLTMPSKAICLRKAKAFTPVQVVDSRWHSNRQSDNMTAIACQLPYCYFRNTTSDYNG-VYDSHHGDAGFTSVLAGLMYNVSCIAQQGAFVYNNVSSSWPQYPYGHCPTAANIGFIAPVCMYDPLPVILLGVLLGIAVLIIVFLLFYFMTDSGVRLHEI >MHV_S_3239_17_NA_AFD97612_1_NA_NA_Unknown_Murine_coronavirus MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCTYVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGDQVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSFVNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEANFTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFNSTLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPKSFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHGDFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYMAPVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA >Parker_HE_YP_003029847_1_NA_NA_Rat_Murine_coronavirus MGRMCIAMAPRTLLLLIGCQLVLGFNEPINIVSHLNDDWFLFGDSRSDCTYVENNGHPKLDWLDLDPKLCNSGKIAAKSGNSLFRSFHFTDFYNYTGEGDQIIFYEGVNFSPSHGFKCLVEGDNKKWMGNKARFYALLYKKMAQYRSLSFVIVPYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYVSEANFTLQGCDEFIVPLCVFNGHSRGSSSDPANKYYTDSQSYYNMDTGVLYGFNSTLDVGNTAQNPGLDLTCMYLVLTPGNYKAVSLEYLLTIPSKAICLRKPKRFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHHGDFYFRQLLSGLLYNVSCISQQGAFLYNNVSSIWPVYGYGHCPTAANIGYMAPVCLYDPLPVILLGVLLGIAVLIIVFLILYFMADSSVRLHEA >RJHM_A_NA_ACN89693_1_NA_USA_Mouse_Murine_coronavirus MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCTYVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGDQIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSFVNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEANFTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFNSTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPKRFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHGDFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYMAPVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA >S_HE_ADI59789_1_NA_USA_Mouse_Murine_coronavirus MGCMCIAMAPRTLLLLIGCQLVFGFNEPLNIFSHLNDDWFLFGDSRSDCTYVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFIDFYNYSGEGDQVIFYEGVNFSPSHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSFVNVSYAYGGNAKPTSICKDK----TLTLNNPTFISKESNYVDYYYESEANFTLQGCDEFIVPLCVFNGHSKGSSSDPANKYYTDSQSYYNMDTGVLYGFNSTLDVGNTVQNPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPKSFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHGDFHFRQLLSGLLYNVSCIAQQGAFVYNNVSSSWPAYGYGHCPTAANIGYMAPVCIYDPLPVILLGVLLGIAVLIIVFLMFYFMTDSGVRLHEA >SA59_RJHM_NA_ACN89727_1_NA_USA_Mouse_Murine_coronavirus MGRTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCTYVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGDQIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKARFYARVYEKMAQYRSLSFVNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEANFTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGFNSTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPKRFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHGDFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYMAPVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA >UNKNOWN_AC_000192_HE_YP_209232_1_NA_NA_Unknown_Murine_coronavirus MGSTCIAMAPRTLLLLIGCQLVFGFNEPLNIVSHLNDDWFLFGDSRSDCTYVENNGHPKLDWLDLDPKLCNSGKISAKSGNSLFRSFHFTDFYNYTGEGDQIVFYEGVNFSPNHGFKCLAYGDNKRWMGNKAAFYARVYEKMAQYRSLSFVNVPYAYGGKAKPTSICKHK----TLTLNNPTFISKESNYVDYYYESEANFTLAGCDEFIVPLCVFNGHSKGSSSDPANKYYMDSQSYYNMDTGVLYGLNCTLDVGNTAKDPGLDLTCRYLALTPGNYKAVSLEYLLSLPSKAICLRKPKRFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHHGDFHFRQLLSGLLLNVSCIAQQGAFLYNNVSSSWPAYGYGQCPTAANIGYMAPVCIYDPLPVVLLGVLLGIAVLIIVFLILYFMTDSGVRLHEA
Reading sequence file /data//pss_subsets/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result/original_alignment/codeml/fasta/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1
Found 15 sequences of length 1329
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 9.4%
Found 191 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0% 77.4%100.0%
Using a window size of 80 with k as 11
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 200 polymorphic sites
**p-Value(s)**
----------
NSS: 0.00e+00 (1000 permutations)
Max Chi^2: 5.00e-03 (1000 permutations)
PHI (Permutation): 3.00e-03 (1000 permutations)
PHI (Normal): 1.71e-03
#NEXUS
[ID: 8943948122]
begin taxa;
dimensions ntax=15;
taxlabels
681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus
MHV_S_3239_17_NA_AFD97612_1_NA_NA_Unknown_Murine_coronavirus
Parker_HE_YP_003029847_1_NA_NA_Rat_Murine_coronavirus
RJHM_A_NA_ACN89693_1_NA_USA_Mouse_Murine_coronavirus
S_HE_ADI59789_1_NA_USA_Mouse_Murine_coronavirus
SA59_RJHM_NA_ACN89727_1_NA_USA_Mouse_Murine_coronavirus
UNKNOWN_AC_000192_HE_YP_209232_1_NA_NA_Unknown_Murine_coronavirus
8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus
A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus
MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus
MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus
;
end;
begin trees;
translate
1 681_NA_AFG25756_1_NA_NA_Rat_Murine_coronavirus,
2 MHV_S_3239_17_NA_AFD97612_1_NA_NA_Unknown_Murine_coronavirus,
3 Parker_HE_YP_003029847_1_NA_NA_Rat_Murine_coronavirus,
4 RJHM_A_NA_ACN89693_1_NA_USA_Mouse_Murine_coronavirus,
5 S_HE_ADI59789_1_NA_USA_Mouse_Murine_coronavirus,
6 SA59_RJHM_NA_ACN89727_1_NA_USA_Mouse_Murine_coronavirus,
7 UNKNOWN_AC_000192_HE_YP_209232_1_NA_NA_Unknown_Murine_coronavirus,
8 8190_NA_AFG25766_1_NA_NA_Rat_Murine_coronavirus,
9 A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus,
10 MHV_BHKR_lab_USA_icA59_17Cl1_2012_HE_AGT17726_1_2012_10_25_USA_Mouse_Murine_coronavirus,
11 MHV_BHKR_lab_USA_icA59_L94P_2012_HE_AGT17737_1_2012_10_25_USA_Mouse_Murine_coronavirus,
12 MHV_BHKR_lab_USA_icA59_ns2M_2012_HE_AGT17748_1_2012_10_25_USA_Mouse_Murine_coronavirus,
13 MHV_BHKR_lab_USA_infA59_H126A_2012_HE_AGT17715_1_2012_10_25_USA_Mouse_Murine_coronavirus,
14 MHV_JHM_IA_NA_ACN89762_1_NA_USA_Mouse_Murine_coronavirus,
15 MHV_MI_HE_BAJ04695_1_1994_Australia_Mouse_Murine_coronavirus
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:5.782277e-03,(((2:6.250088e-04,5:1.378368e-03)1.000:4.384808e-02,(((9:8.374804e-04,13:8.483244e-04)0.914:2.863582e-03,10:8.025373e-04,11:8.219522e-04,12:8.282963e-04)0.897:2.763095e-02,15:6.832505e-01)0.620:2.676815e-02)0.620:9.943413e-03,(4:6.834026e-04,(6:5.864482e-04,7:5.605053e-03,14:5.877993e-04)1.000:1.424100e-02)0.999:2.766754e-02)1.000:9.450870e-02,(3:5.733128e-04,8:5.787140e-04)0.981:3.141800e-03);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:5.782277e-03,(((2:6.250088e-04,5:1.378368e-03):4.384808e-02,(((9:8.374804e-04,13:8.483244e-04):2.863582e-03,10:8.025373e-04,11:8.219522e-04,12:8.282963e-04):2.763095e-02,15:6.832505e-01):2.676815e-02):9.943413e-03,(4:6.834026e-04,(6:5.864482e-04,7:5.605053e-03,14:5.877993e-04):1.424100e-02):2.766754e-02):9.450870e-02,(3:5.733128e-04,8:5.787140e-04):3.141800e-03);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -4059.59 -4082.26
2 -4060.52 -4082.39
--------------------------------------
TOTAL -4059.95 -4082.33
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.960602 0.007811 0.792385 1.137121 0.952958 926.70 1081.49 1.000
r(A<->C){all} 0.094895 0.000514 0.050050 0.136239 0.093599 853.85 867.14 1.000
r(A<->G){all} 0.243614 0.000778 0.192406 0.301975 0.242388 803.17 989.25 1.002
r(A<->T){all} 0.074763 0.000197 0.050808 0.104558 0.074004 1115.77 1165.61 1.000
r(C<->G){all} 0.110207 0.000535 0.067374 0.156350 0.108718 687.95 774.38 1.000
r(C<->T){all} 0.405297 0.001036 0.343873 0.470783 0.405172 780.61 833.83 1.000
r(G<->T){all} 0.071223 0.000206 0.044967 0.100101 0.070492 1136.62 1206.31 1.000
pi(A){all} 0.251114 0.000116 0.231695 0.273109 0.251028 1039.61 1087.09 1.000
pi(C){all} 0.185638 0.000085 0.168074 0.203668 0.185686 1045.73 1171.41 1.001
pi(G){all} 0.217639 0.000106 0.197029 0.237841 0.217456 1090.43 1113.08 1.000
pi(T){all} 0.345608 0.000137 0.322877 0.368387 0.345575 1045.13 1103.29 1.000
alpha{1,2} 0.235626 0.001746 0.164660 0.325512 0.231239 1067.27 1193.31 1.000
alpha{3} 3.232228 1.666248 1.283614 5.837711 2.956414 1225.80 1252.38 1.000
pinvar{all} 0.086540 0.003210 0.000105 0.190028 0.079067 1135.83 1235.34 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/A59_HE_YP_009824981_1_NA_USA_Unknown_Murine_coronavirus.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 15 ls = 299
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 8 8 11 11 11 11 | Ser TCT 6 6 6 6 6 6 | Tyr TAT 23 23 22 22 22 22 | Cys TGT 10 9 8 8 8 8
TTC 7 7 5 5 5 5 | TCC 5 6 5 5 5 5 | TAC 3 3 3 3 3 3 | TGC 0 1 2 2 2 2
Leu TTA 8 8 8 8 8 8 | TCA 2 2 3 3 3 3 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 8 8 9 9 9 9 | TCG 2 2 3 3 3 3 | TAG 0 0 0 0 0 0 | Trp TGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 7 7 3 3 3 3 | Pro CCT 3 3 4 4 4 4 | His CAT 4 4 7 7 7 7 | Arg CGT 2 2 0 0 0 0
CTC 3 3 5 5 5 5 | CCC 6 6 3 3 3 3 | CAC 2 2 1 1 1 1 | CGC 2 2 3 3 3 3
CTA 6 6 3 3 3 3 | CCA 4 4 3 3 3 3 | Gln CAA 3 3 1 1 1 1 | CGA 1 1 2 2 2 2
CTG 1 1 2 2 2 2 | CCG 2 2 3 3 3 3 | CAG 6 6 7 7 7 7 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 8 8 6 7 7 7 | Thr ACT 9 8 5 4 4 4 | Asn AAT 16 15 16 16 16 16 | Ser AGT 6 5 5 5 5 5
ATC 2 2 2 2 2 2 | ACC 5 5 3 3 3 3 | AAC 2 3 3 3 3 3 | AGC 3 4 5 5 5 5
ATA 4 4 4 4 4 4 | ACA 3 3 5 5 5 5 | Lys AAA 4 4 3 3 3 3 | Arg AGA 0 0 1 1 1 1
Met ATG 7 8 8 8 8 8 | ACG 0 0 2 2 2 2 | AAG 8 8 8 8 8 8 | AGG 5 5 4 4 4 4
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 9 9 8 8 8 8 | Ala GCT 7 7 7 7 7 7 | Asp GAT 10 10 9 9 9 9 | Gly GGT 12 13 15 15 15 15
GTC 4 4 2 2 2 2 | GCC 7 6 7 7 7 7 | GAC 4 4 5 5 5 5 | GGC 5 5 3 3 3 3
GTA 5 5 2 2 2 2 | GCA 3 3 7 7 7 7 | Glu GAA 3 3 3 2 2 2 | GGA 1 1 1 1 1 1
GTG 6 6 7 7 7 7 | GCG 2 2 2 2 2 2 | GAG 2 2 5 6 6 6 | GGG 1 0 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 11 9 13 10 8 10 | Ser TCT 6 4 7 5 6 4 | Tyr TAT 22 22 22 21 23 22 | Cys TGT 8 7 6 6 9 7
TTC 5 6 1 6 7 6 | TCC 5 8 1 7 6 8 | TAC 3 2 5 4 3 2 | TGC 2 3 4 4 1 3
Leu TTA 8 11 8 7 8 8 | TCA 3 2 2 3 2 2 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 9 8 14 9 8 9 | TCG 3 2 1 2 2 2 | TAG 0 0 0 0 0 0 | Trp TGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 3 5 2 3 7 4 | Pro CCT 4 4 6 4 3 5 | His CAT 7 5 6 5 4 5 | Arg CGT 0 1 2 1 2 1
CTC 5 5 3 4 3 5 | CCC 3 3 4 3 6 3 | CAC 1 2 2 2 2 2 | CGC 3 3 0 2 2 3
CTA 3 2 0 4 6 3 | CCA 3 5 3 4 4 4 | Gln CAA 1 1 4 3 3 1 | CGA 2 2 1 2 1 2
CTG 2 1 4 2 1 2 | CCG 3 3 1 3 2 3 | CAG 7 8 5 6 6 8 | CGG 0 0 1 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 6 7 9 7 8 5 | Thr ACT 5 5 9 6 8 5 | Asn AAT 16 11 16 15 15 11 | Ser AGT 5 5 9 4 5 5
ATC 2 2 2 1 2 3 | ACC 3 4 6 4 5 4 | AAC 3 6 5 4 3 6 | AGC 5 4 3 6 4 4
ATA 4 2 8 3 4 3 | ACA 5 3 3 4 3 3 | Lys AAA 3 5 4 3 4 5 | Arg AGA 1 1 2 1 0 1
Met ATG 8 8 9 8 8 9 | ACG 2 3 3 2 0 3 | AAG 8 8 5 9 8 8 | AGG 4 4 1 4 5 4
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 8 9 9 10 9 8 | Ala GCT 7 9 8 9 7 8 | Asp GAT 9 11 10 10 10 11 | Gly GGT 15 13 13 14 13 13
GTC 2 3 4 1 4 2 | GCC 7 6 4 5 6 6 | GAC 5 3 2 4 4 3 | GGC 3 4 3 3 5 4
GTA 2 5 1 5 5 4 | GCA 7 5 4 4 3 6 | Glu GAA 3 2 1 1 3 2 | GGA 1 0 2 1 1 0
GTG 7 6 4 7 6 8 | GCG 2 1 2 2 2 1 | GAG 5 5 5 6 2 5 | GGG 2 3 3 2 0 3
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------
Phe TTT 10 9 8 | Ser TCT 5 4 4 | Tyr TAT 21 22 22 | Cys TGT 6 7 7
TTC 6 6 6 | TCC 7 8 7 | TAC 4 2 2 | TGC 4 3 4
Leu TTA 7 11 11 | TCA 3 2 2 | *** TAA 0 0 0 | *** TGA 0 0 0
TTG 9 8 9 | TCG 2 2 2 | TAG 0 0 0 | Trp TGG 2 2 2
--------------------------------------------------------------------------------------
Leu CTT 3 5 5 | Pro CCT 4 4 4 | His CAT 5 5 5 | Arg CGT 1 1 1
CTC 4 5 5 | CCC 3 3 3 | CAC 2 2 2 | CGC 2 3 3
CTA 4 2 2 | CCA 4 5 5 | Gln CAA 3 1 1 | CGA 2 2 1
CTG 2 1 1 | CCG 3 3 3 | CAG 6 8 8 | CGG 0 0 0
--------------------------------------------------------------------------------------
Ile ATT 7 7 7 | Thr ACT 6 5 5 | Asn AAT 15 11 11 | Ser AGT 4 5 5
ATC 1 2 2 | ACC 4 4 4 | AAC 4 6 6 | AGC 6 4 4
ATA 3 2 2 | ACA 4 3 3 | Lys AAA 3 5 5 | Arg AGA 1 1 1
Met ATG 8 8 8 | ACG 2 3 3 | AAG 9 8 8 | AGG 4 4 4
--------------------------------------------------------------------------------------
Val GTT 10 9 9 | Ala GCT 9 9 9 | Asp GAT 10 11 11 | Gly GGT 14 13 13
GTC 1 3 3 | GCC 5 6 6 | GAC 4 3 3 | GGC 3 4 4
GTA 5 5 5 | GCA 4 5 6 | Glu GAA 1 2 2 | GGA 1 0 0
GTG 7 6 6 | GCG 2 1 1 | GAG 6 5 5 | GGG 2 3 3
--------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C1
position 1: T:0.28094 C:0.17391 A:0.27425 G:0.27090
position 2: T:0.31104 C:0.22074 A:0.30100 G:0.16722
position 3: T:0.46823 C:0.20067 A:0.15719 G:0.17391
Average T:0.35340 C:0.19844 A:0.24415 G:0.20401
#2: C2
position 1: T:0.28428 C:0.17391 A:0.27425 G:0.26756
position 2: T:0.31438 C:0.21739 A:0.30100 G:0.16722
position 3: T:0.45819 C:0.21070 A:0.15719 G:0.17391
Average T:0.35229 C:0.20067 A:0.24415 G:0.20290
#3: C3
position 1: T:0.29097 C:0.15719 A:0.26756 G:0.28428
position 2: T:0.28428 C:0.22742 A:0.31104 G:0.17726
position 3: T:0.44147 C:0.19064 A:0.15385 G:0.21405
Average T:0.33891 C:0.19175 A:0.24415 G:0.22520
#4: C4
position 1: T:0.29097 C:0.15719 A:0.26756 G:0.28428
position 2: T:0.28763 C:0.22408 A:0.31104 G:0.17726
position 3: T:0.44147 C:0.19064 A:0.15050 G:0.21739
Average T:0.34002 C:0.19064 A:0.24303 G:0.22631
#5: C5
position 1: T:0.29097 C:0.15719 A:0.26756 G:0.28428
position 2: T:0.28763 C:0.22408 A:0.31104 G:0.17726
position 3: T:0.44147 C:0.19064 A:0.15050 G:0.21739
Average T:0.34002 C:0.19064 A:0.24303 G:0.22631
#6: C6
position 1: T:0.29097 C:0.15719 A:0.26756 G:0.28428
position 2: T:0.28763 C:0.22408 A:0.31104 G:0.17726
position 3: T:0.44147 C:0.19064 A:0.15050 G:0.21739
Average T:0.34002 C:0.19064 A:0.24303 G:0.22631
#7: C7
position 1: T:0.29097 C:0.15719 A:0.26756 G:0.28428
position 2: T:0.28428 C:0.22742 A:0.31104 G:0.17726
position 3: T:0.44147 C:0.19064 A:0.15385 G:0.21405
Average T:0.33891 C:0.19175 A:0.24415 G:0.22520
#8: C8
position 1: T:0.28763 C:0.16722 A:0.26087 G:0.28428
position 2: T:0.29766 C:0.22408 A:0.30435 G:0.17391
position 3: T:0.42475 C:0.21405 A:0.15385 G:0.20736
Average T:0.33668 C:0.20178 A:0.23969 G:0.22185
#9: C9
position 1: T:0.28763 C:0.14716 A:0.31438 G:0.25084
position 2: T:0.30435 C:0.21405 A:0.30769 G:0.17391
position 3: T:0.49164 C:0.16388 A:0.14381 G:0.20067
Average T:0.36120 C:0.17503 A:0.25530 G:0.20847
#10: C10
position 1: T:0.28763 C:0.16054 A:0.27090 G:0.28094
position 2: T:0.29097 C:0.22408 A:0.31104 G:0.17391
position 3: T:0.43478 C:0.20067 A:0.15050 G:0.21405
Average T:0.33779 C:0.19509 A:0.24415 G:0.22297
#11: C11
position 1: T:0.28428 C:0.17391 A:0.27425 G:0.26756
position 2: T:0.31438 C:0.21739 A:0.30100 G:0.16722
position 3: T:0.45819 C:0.21070 A:0.15719 G:0.17391
Average T:0.35229 C:0.20067 A:0.24415 G:0.20290
#12: C12
position 1: T:0.28428 C:0.17057 A:0.26421 G:0.28094
position 2: T:0.29766 C:0.22408 A:0.30435 G:0.17391
position 3: T:0.41472 C:0.21405 A:0.14716 G:0.22408
Average T:0.33222 C:0.20290 A:0.23857 G:0.22631
#13: C13
position 1: T:0.28763 C:0.16054 A:0.27090 G:0.28094
position 2: T:0.29097 C:0.22408 A:0.31104 G:0.17391
position 3: T:0.43478 C:0.20067 A:0.15050 G:0.21405
Average T:0.33779 C:0.19509 A:0.24415 G:0.22297
#14: C14
position 1: T:0.28763 C:0.16722 A:0.26087 G:0.28428
position 2: T:0.29766 C:0.22408 A:0.30435 G:0.17391
position 3: T:0.42475 C:0.21405 A:0.15385 G:0.20736
Average T:0.33668 C:0.20178 A:0.23969 G:0.22185
#15: C15
position 1: T:0.28763 C:0.16388 A:0.26087 G:0.28763
position 2: T:0.29766 C:0.22408 A:0.30435 G:0.17391
position 3: T:0.42140 C:0.21405 A:0.15385 G:0.21070
Average T:0.33556 C:0.20067 A:0.23969 G:0.22408
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 148 | Ser S TCT 81 | Tyr Y TAT 331 | Cys C TGT 114
TTC 83 | TCC 88 | TAC 45 | TGC 37
Leu L TTA 127 | TCA 37 | *** * TAA 0 | *** * TGA 0
TTG 135 | TCG 34 | TAG 0 | Trp W TGG 30
------------------------------------------------------------------------------
Leu L CTT 63 | Pro P CCT 60 | His H CAT 83 | Arg R CGT 14
CTC 65 | CCC 55 | CAC 25 | CGC 37
CTA 50 | CCA 57 | Gln Q CAA 28 | CGA 25
CTG 26 | CCG 40 | CAG 102 | CGG 1
------------------------------------------------------------------------------
Ile I ATT 106 | Thr T ACT 88 | Asn N AAT 216 | Ser S AGT 78
ATC 29 | ACC 60 | AAC 60 | AGC 67
ATA 55 | ACA 57 | Lys K AAA 57 | Arg R AGA 13
Met M ATG 121 | ACG 29 | AAG 119 | AGG 60
------------------------------------------------------------------------------
Val V GTT 131 | Ala A GCT 117 | Asp D GAT 149 | Gly G GGT 206
GTC 39 | GCC 92 | GAC 59 | GGC 55
GTA 55 | GCA 78 | Glu E GAA 32 | GGA 12
GTG 97 | GCG 26 | GAG 71 | GGG 30
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.28763 C:0.16299 A:0.27090 G:0.27848
position 2: T:0.29654 C:0.22274 A:0.30702 G:0.17369
position 3: T:0.44259 C:0.19978 A:0.15229 G:0.20535
Average T:0.34225 C:0.19517 A:0.24340 G:0.21918
Model 1: NearlyNeutral (2 categories)
TREE # 1: (1, (((10, 13), (((3, 7), 4, 5, 6), 9)), (12, (14, 15, 8))), (11, 2)); MP score: 313
check convergence..
lnL(ntime: 24 np: 27): -2683.980277 +0.000000
16..1 16..17 17..18 18..19 19..10 19..13 18..20 20..21 21..22 22..3 22..7 21..4 21..5 21..6 20..9 17..23 23..12 23..24 24..14 24..15 24..8 16..25 25..11 25..2
0.017753 0.322437 0.022275 0.079064 0.000004 0.000004 0.000004 0.110112 0.007221 0.000004 0.000004 0.000004 0.000004 0.000004 1.923355 0.100167 0.000004 0.060486 0.000004 0.018397 0.000004 0.007282 0.000004 0.000004 2.494198 0.791286 0.029574
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 2.668601
(1: 0.017753, (((10: 0.000004, 13: 0.000004): 0.079064, (((3: 0.000004, 7: 0.000004): 0.007221, 4: 0.000004, 5: 0.000004, 6: 0.000004): 0.110112, 9: 1.923355): 0.000004): 0.022275, (12: 0.000004, (14: 0.000004, 15: 0.018397, 8: 0.000004): 0.060486): 0.100167): 0.322437, (11: 0.000004, 2: 0.000004): 0.007282);
(C1: 0.017753, (((C10: 0.000004, C13: 0.000004): 0.079064, (((C3: 0.000004, C7: 0.000004): 0.007221, C4: 0.000004, C5: 0.000004, C6: 0.000004): 0.110112, C9: 1.923355): 0.000004): 0.022275, (C12: 0.000004, (C14: 0.000004, C15: 0.018397, C8: 0.000004): 0.060486): 0.100167): 0.322437, (C11: 0.000004, C2: 0.000004): 0.007282);
Detailed output identifying parameters
kappa (ts/tv) = 2.49420
MLEs of dN/dS (w) for site classes (K=2)
p: 0.79129 0.20871
w: 0.02957 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
16..1 0.018 694.2 202.8 0.2321 0.0034 0.0146 2.4 3.0
16..17 0.322 694.2 202.8 0.2321 0.0615 0.2649 42.7 53.7
17..18 0.022 694.2 202.8 0.2321 0.0042 0.0183 2.9 3.7
18..19 0.079 694.2 202.8 0.2321 0.0151 0.0650 10.5 13.2
19..10 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
19..13 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
18..20 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
20..21 0.110 694.2 202.8 0.2321 0.0210 0.0905 14.6 18.3
21..22 0.007 694.2 202.8 0.2321 0.0014 0.0059 1.0 1.2
22..3 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
22..7 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
21..4 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
21..5 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
21..6 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
20..9 1.923 694.2 202.8 0.2321 0.3668 1.5803 254.7 320.4
17..23 0.100 694.2 202.8 0.2321 0.0191 0.0823 13.3 16.7
23..12 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
23..24 0.060 694.2 202.8 0.2321 0.0115 0.0497 8.0 10.1
24..14 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
24..15 0.018 694.2 202.8 0.2321 0.0035 0.0151 2.4 3.1
24..8 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
16..25 0.007 694.2 202.8 0.2321 0.0014 0.0060 1.0 1.2
25..11 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
25..2 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
Time used: 1:12
Model 2: PositiveSelection (3 categories)
TREE # 1: (1, (((10, 13), (((3, 7), 4, 5, 6), 9)), (12, (14, 15, 8))), (11, 2)); MP score: 313
lnL(ntime: 24 np: 29): -2683.980277 +0.000000
16..1 16..17 17..18 18..19 19..10 19..13 18..20 20..21 21..22 22..3 22..7 21..4 21..5 21..6 20..9 17..23 23..12 23..24 24..14 24..15 24..8 16..25 25..11 25..2
0.017753 0.322437 0.022275 0.079064 0.000004 0.000004 0.000004 0.110112 0.007221 0.000004 0.000004 0.000004 0.000004 0.000004 1.923354 0.100167 0.000004 0.060486 0.000004 0.018396 0.000004 0.007282 0.000004 0.000004 2.494195 0.791286 0.105416 0.029574 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 2.668599
(1: 0.017753, (((10: 0.000004, 13: 0.000004): 0.079064, (((3: 0.000004, 7: 0.000004): 0.007221, 4: 0.000004, 5: 0.000004, 6: 0.000004): 0.110112, 9: 1.923354): 0.000004): 0.022275, (12: 0.000004, (14: 0.000004, 15: 0.018396, 8: 0.000004): 0.060486): 0.100167): 0.322437, (11: 0.000004, 2: 0.000004): 0.007282);
(C1: 0.017753, (((C10: 0.000004, C13: 0.000004): 0.079064, (((C3: 0.000004, C7: 0.000004): 0.007221, C4: 0.000004, C5: 0.000004, C6: 0.000004): 0.110112, C9: 1.923354): 0.000004): 0.022275, (C12: 0.000004, (C14: 0.000004, C15: 0.018396, C8: 0.000004): 0.060486): 0.100167): 0.322437, (C11: 0.000004, C2: 0.000004): 0.007282);
Detailed output identifying parameters
kappa (ts/tv) = 2.49419
MLEs of dN/dS (w) for site classes (K=3)
p: 0.79129 0.10542 0.10330
w: 0.02957 1.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
16..1 0.018 694.2 202.8 0.2321 0.0034 0.0146 2.4 3.0
16..17 0.322 694.2 202.8 0.2321 0.0615 0.2649 42.7 53.7
17..18 0.022 694.2 202.8 0.2321 0.0042 0.0183 2.9 3.7
18..19 0.079 694.2 202.8 0.2321 0.0151 0.0650 10.5 13.2
19..10 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
19..13 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
18..20 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
20..21 0.110 694.2 202.8 0.2321 0.0210 0.0905 14.6 18.3
21..22 0.007 694.2 202.8 0.2321 0.0014 0.0059 1.0 1.2
22..3 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
22..7 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
21..4 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
21..5 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
21..6 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
20..9 1.923 694.2 202.8 0.2321 0.3668 1.5803 254.7 320.4
17..23 0.100 694.2 202.8 0.2321 0.0191 0.0823 13.3 16.7
23..12 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
23..24 0.060 694.2 202.8 0.2321 0.0115 0.0497 8.0 10.1
24..14 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
24..15 0.018 694.2 202.8 0.2321 0.0035 0.0151 2.4 3.1
24..8 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
16..25 0.007 694.2 202.8 0.2321 0.0014 0.0060 1.0 1.2
25..11 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
25..2 0.000 694.2 202.8 0.2321 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.948 0.044 0.005 0.001 0.001 0.000 0.000 0.000 0.000 0.000
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.018
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.059 0.882
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.009 0.030 0.000
sum of density on p0-p1 = 1.000000
Time used: 3:19
Model 7: beta (10 categories)
TREE # 1: (1, (((10, 13), (((3, 7), 4, 5, 6), 9)), (12, (14, 15, 8))), (11, 2)); MP score: 313
lnL(ntime: 24 np: 27): -2680.075031 +0.000000
16..1 16..17 17..18 18..19 19..10 19..13 18..20 20..21 21..22 22..3 22..7 21..4 21..5 21..6 20..9 17..23 23..12 23..24 24..14 24..15 24..8 16..25 25..11 25..2
0.017630 0.317322 0.020697 0.076585 0.000004 0.000004 0.006876 0.102967 0.007128 0.000004 0.000004 0.000004 0.000004 0.000004 1.872590 0.100369 0.000004 0.059420 0.000004 0.018067 0.000004 0.007175 0.000004 0.000004 2.234063 0.157935 0.838839
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 2.606875
(1: 0.017630, (((10: 0.000004, 13: 0.000004): 0.076585, (((3: 0.000004, 7: 0.000004): 0.007128, 4: 0.000004, 5: 0.000004, 6: 0.000004): 0.102967, 9: 1.872590): 0.006876): 0.020697, (12: 0.000004, (14: 0.000004, 15: 0.018067, 8: 0.000004): 0.059420): 0.100369): 0.317322, (11: 0.000004, 2: 0.000004): 0.007175);
(C1: 0.017630, (((C10: 0.000004, C13: 0.000004): 0.076585, (((C3: 0.000004, C7: 0.000004): 0.007128, C4: 0.000004, C5: 0.000004, C6: 0.000004): 0.102967, C9: 1.872590): 0.006876): 0.020697, (C12: 0.000004, (C14: 0.000004, C15: 0.018067, C8: 0.000004): 0.059420): 0.100369): 0.317322, (C11: 0.000004, C2: 0.000004): 0.007175);
Detailed output identifying parameters
kappa (ts/tv) = 2.23406
Parameters in M7 (beta):
p = 0.15794 q = 0.83884
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00000 0.00001 0.00020 0.00170 0.00832 0.02956 0.08444 0.20515 0.43525 0.80371
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
16..1 0.018 698.5 198.5 0.1568 0.0027 0.0171 1.9 3.4
16..17 0.317 698.5 198.5 0.1568 0.0483 0.3080 33.7 61.1
17..18 0.021 698.5 198.5 0.1568 0.0032 0.0201 2.2 4.0
18..19 0.077 698.5 198.5 0.1568 0.0117 0.0743 8.1 14.8
19..10 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
19..13 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
18..20 0.007 698.5 198.5 0.1568 0.0010 0.0067 0.7 1.3
20..21 0.103 698.5 198.5 0.1568 0.0157 0.0999 10.9 19.8
21..22 0.007 698.5 198.5 0.1568 0.0011 0.0069 0.8 1.4
22..3 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
22..7 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
21..4 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
21..5 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
21..6 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
20..9 1.873 698.5 198.5 0.1568 0.2850 1.8174 199.1 360.8
17..23 0.100 698.5 198.5 0.1568 0.0153 0.0974 10.7 19.3
23..12 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
23..24 0.059 698.5 198.5 0.1568 0.0090 0.0577 6.3 11.4
24..14 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
24..15 0.018 698.5 198.5 0.1568 0.0028 0.0175 1.9 3.5
24..8 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
16..25 0.007 698.5 198.5 0.1568 0.0011 0.0070 0.8 1.4
25..11 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
25..2 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
Time used: 8:32
Model 8: beta&w>1 (11 categories)
TREE # 1: (1, (((10, 13), (((3, 7), 4, 5, 6), 9)), (12, (14, 15, 8))), (11, 2)); MP score: 313
lnL(ntime: 24 np: 29): -2680.075070 +0.000000
16..1 16..17 17..18 18..19 19..10 19..13 18..20 20..21 21..22 22..3 22..7 21..4 21..5 21..6 20..9 17..23 23..12 23..24 24..14 24..15 24..8 16..25 25..11 25..2
0.017630 0.317322 0.020697 0.076586 0.000004 0.000004 0.006876 0.102967 0.007128 0.000004 0.000004 0.000004 0.000004 0.000004 1.872591 0.100369 0.000004 0.059420 0.000004 0.018067 0.000004 0.007175 0.000004 0.000004 2.234066 0.999990 0.157937 0.838892 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 2.606877
(1: 0.017630, (((10: 0.000004, 13: 0.000004): 0.076586, (((3: 0.000004, 7: 0.000004): 0.007128, 4: 0.000004, 5: 0.000004, 6: 0.000004): 0.102967, 9: 1.872591): 0.006876): 0.020697, (12: 0.000004, (14: 0.000004, 15: 0.018067, 8: 0.000004): 0.059420): 0.100369): 0.317322, (11: 0.000004, 2: 0.000004): 0.007175);
(C1: 0.017630, (((C10: 0.000004, C13: 0.000004): 0.076586, (((C3: 0.000004, C7: 0.000004): 0.007128, C4: 0.000004, C5: 0.000004, C6: 0.000004): 0.102967, C9: 1.872591): 0.006876): 0.020697, (C12: 0.000004, (C14: 0.000004, C15: 0.018067, C8: 0.000004): 0.059420): 0.100369): 0.317322, (C11: 0.000004, C2: 0.000004): 0.007175);
Detailed output identifying parameters
kappa (ts/tv) = 2.23407
Parameters in M8 (beta&w>1):
p0 = 0.99999 p = 0.15794 q = 0.83889
(p1 = 0.00001) w = 1.00000
MLEs of dN/dS (w) for site classes (K=11)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.00001
w: 0.00000 0.00001 0.00020 0.00170 0.00832 0.02955 0.08444 0.20513 0.43522 0.80368 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
16..1 0.018 698.5 198.5 0.1568 0.0027 0.0171 1.9 3.4
16..17 0.317 698.5 198.5 0.1568 0.0483 0.3080 33.7 61.1
17..18 0.021 698.5 198.5 0.1568 0.0032 0.0201 2.2 4.0
18..19 0.077 698.5 198.5 0.1568 0.0117 0.0743 8.1 14.8
19..10 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
19..13 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
18..20 0.007 698.5 198.5 0.1568 0.0010 0.0067 0.7 1.3
20..21 0.103 698.5 198.5 0.1568 0.0157 0.0999 10.9 19.8
21..22 0.007 698.5 198.5 0.1568 0.0011 0.0069 0.8 1.4
22..3 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
22..7 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
21..4 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
21..5 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
21..6 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
20..9 1.873 698.5 198.5 0.1568 0.2850 1.8174 199.1 360.8
17..23 0.100 698.5 198.5 0.1568 0.0153 0.0974 10.7 19.3
23..12 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
23..24 0.059 698.5 198.5 0.1568 0.0090 0.0577 6.3 11.4
24..14 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
24..15 0.018 698.5 198.5 0.1568 0.0028 0.0175 1.9 3.5
24..8 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
16..25 0.007 698.5 198.5 0.1568 0.0011 0.0070 0.8 1.4
25..11 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
25..2 0.000 698.5 198.5 0.1568 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
71 Q 0.718 1.291 +- 0.375
158 R 0.631 1.204 +- 0.426
241 V 0.541 1.124 +- 0.446
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.998
p : 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.006 0.153 0.321 0.263 0.145 0.068 0.030 0.014
ws: 0.992 0.007 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
Time used: 15:36
Model 1: NearlyNeutral -2683.980277 Model 2: PositiveSelection -2683.980277 Model 7: beta -2680.075031 Model 8: beta&w>1 -2680.075070 Model 2 vs 1 0 Model 8 vs 7 -.000078
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
