--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1245.09 -1262.36
2 -1244.65 -1264.30
--------------------------------------
TOTAL -1244.84 -1263.74
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.030732 0.000050 0.018454 0.045844 0.030110 1201.96 1287.90 1.000
r(A<->C){all} 0.057318 0.002968 0.000099 0.168631 0.040671 223.82 255.03 1.000
r(A<->G){all} 0.315890 0.007947 0.140527 0.481337 0.311583 279.29 287.16 1.000
r(A<->T){all} 0.100707 0.002260 0.023162 0.195861 0.093045 357.29 377.40 1.002
r(C<->G){all} 0.058094 0.002829 0.000112 0.164934 0.042517 217.92 237.55 1.002
r(C<->T){all} 0.399493 0.009361 0.212513 0.576424 0.394017 250.55 270.01 1.001
r(G<->T){all} 0.068499 0.001500 0.008707 0.145823 0.061764 379.90 430.13 1.001
pi(A){all} 0.240680 0.000215 0.211198 0.268821 0.240145 992.25 1051.35 1.000
pi(C){all} 0.118561 0.000115 0.097590 0.139653 0.118070 1032.60 1051.76 1.000
pi(G){all} 0.179613 0.000169 0.154288 0.204536 0.179884 1103.89 1108.01 1.000
pi(T){all} 0.461146 0.000283 0.428555 0.493103 0.461157 983.22 987.20 1.000
alpha{1,2} 0.448037 0.399503 0.000653 1.632841 0.214891 904.78 923.38 1.001
alpha{3} 1.480502 1.334148 0.003359 3.689984 1.189478 1013.64 1140.40 1.005
pinvar{all} 0.551921 0.052222 0.080379 0.887493 0.595825 460.25 540.65 1.010
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -1189.294580
Model 2: PositiveSelection -1188.623994
Model 7: beta -1189.361587
Model 8: beta&w>1 -1188.623988
Model 2 vs 1 1.341172
Model 8 vs 7 1.475198
-- Starting log on Sat Nov 05 01:39:58 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.09 sec, SCORE=1000, Nseq=26, Len=279
C1 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C2 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C3 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C4 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C5 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C6 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C7 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C8 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C9 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C10 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C11 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C12 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C13 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C14 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C15 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C16 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C17 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C18 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C19 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C20 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C21 SGKVIFGLKTMFLFSIFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C22 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C23 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C24 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C25 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C26 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
***************:**********************************
C1 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C2 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C3 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C4 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C5 LFLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C6 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C7 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C8 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C9 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C10 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C11 LFLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C12 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C13 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C14 LFLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C15 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C16 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C17 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C18 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C19 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C20 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C21 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C22 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C23 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C24 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C25 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C26 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
*.************************************************
C1 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C2 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C3 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C4 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C5 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C6 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C7 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C8 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C9 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C10 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C11 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C12 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C13 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C14 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C15 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C16 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C17 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C18 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C19 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C20 LQMDVQGLVNVLACLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C21 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C22 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C23 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C24 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C25 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C26 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
************.*************************************
C1 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C2 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C3 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C4 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C5 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C6 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C7 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C8 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C9 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C10 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C11 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C12 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVFFSPESVFSVFGDVKLTL
C13 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFNVFGDVKLTL
C14 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C15 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C16 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C17 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C18 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C19 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLILFFSPESVFSVFGDVKLTL
C20 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C21 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C22 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C23 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C24 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C25 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C26 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
*******************************::*******.*********
C1 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C2 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C3 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C4 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C5 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C6 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C7 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C8 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C9 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C10 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C11 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C12 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C13 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C14 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C15 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C16 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C17 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C18 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C19 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C20 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C21 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C22 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C23 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C24 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C25 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C26 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
**************************************************
C1 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C2 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C3 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C4 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C5 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C6 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C7 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C8 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C9 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C10 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C11 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C12 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C13 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C14 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C15 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C16 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C17 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C18 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C19 PHGPFDALWLSFKLLGIGGDRCIKISTIQ
C20 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C21 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C22 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C23 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C24 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C25 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C26 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
***************************:*
-- Starting log on Sat Nov 05 01:40:41 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.38 sec, SCORE=1000, Nseq=26, Len=279
C1 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C2 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C3 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C4 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C5 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C6 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C7 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C8 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C9 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C10 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C11 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C12 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C13 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C14 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C15 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C16 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C17 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C18 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C19 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C20 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C21 SGKVIFGLKTMFLFSIFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C22 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C23 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C24 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C25 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C26 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
***************:**********************************
C1 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C2 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C3 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C4 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C5 LFLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C6 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C7 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C8 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C9 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C10 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C11 LFLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C12 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C13 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C14 LFLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C15 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C16 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C17 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C18 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C19 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C20 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C21 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C22 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C23 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C24 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C25 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C26 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
*.************************************************
C1 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C2 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C3 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C4 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C5 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C6 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C7 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C8 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C9 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C10 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C11 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C12 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C13 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C14 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C15 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C16 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C17 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C18 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C19 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C20 LQMDVQGLVNVLACLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C21 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C22 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C23 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C24 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C25 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C26 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
************.*************************************
C1 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C2 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C3 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C4 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C5 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C6 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C7 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C8 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C9 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C10 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C11 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C12 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVFFSPESVFSVFGDVKLTL
C13 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFNVFGDVKLTL
C14 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C15 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C16 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C17 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C18 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C19 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLILFFSPESVFSVFGDVKLTL
C20 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C21 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C22 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C23 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C24 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C25 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C26 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
*******************************::*******.*********
C1 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C2 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C3 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C4 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C5 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C6 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C7 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C8 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C9 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C10 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C11 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C12 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C13 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C14 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C15 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C16 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C17 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C18 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C19 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C20 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C21 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C22 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C23 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C24 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C25 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C26 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
**************************************************
C1 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C2 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C3 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C4 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C5 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C6 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C7 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C8 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C9 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C10 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C11 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C12 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C13 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C14 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C15 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C16 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C17 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C18 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C19 PHGPFDALWLSFKLLGIGGDRCIKISTIQ
C20 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C21 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C22 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C23 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C24 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C25 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C26 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
***************************:*
-- Starting log on Sat Nov 05 03:25:38 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63.result/gapped_alignment/codeml,NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 26 taxa and 837 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C1
Taxon 2 -> C10
Taxon 3 -> C11
Taxon 4 -> C12
Taxon 5 -> C13
Taxon 6 -> C14
Taxon 7 -> C15
Taxon 8 -> C16
Taxon 9 -> C17
Taxon 10 -> C18
Taxon 11 -> C19
Taxon 12 -> C2
Taxon 13 -> C20
Taxon 14 -> C21
Taxon 15 -> C22
Taxon 16 -> C23
Taxon 17 -> C24
Taxon 18 -> C25
Taxon 19 -> C26
Taxon 20 -> C3
Taxon 21 -> C4
Taxon 22 -> C5
Taxon 23 -> C6
Taxon 24 -> C7
Taxon 25 -> C8
Taxon 26 -> C9
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1667618740
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 1158949077
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 4530146734
Seed = 795314029
Swapseed = 1667618740
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 10 unique site patterns
Division 2 has 6 unique site patterns
Division 3 has 16 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -2070.736418 -- 74.568658
Chain 2 -- -2116.693463 -- 74.568658
Chain 3 -- -2119.506984 -- 74.568658
Chain 4 -- -2079.002356 -- 74.568658
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -2100.126934 -- 74.568658
Chain 2 -- -2082.052704 -- 74.568658
Chain 3 -- -2138.382528 -- 74.568658
Chain 4 -- -2106.645476 -- 74.568658
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-2070.736] (-2116.693) (-2119.507) (-2079.002) * [-2100.127] (-2082.053) (-2138.383) (-2106.645)
1000 -- (-1302.378) (-1333.701) [-1264.269] (-1306.312) * (-1349.511) [-1298.781] (-1314.720) (-1297.431) -- 0:00:00
2000 -- [-1257.057] (-1288.311) (-1260.109) (-1271.586) * [-1259.421] (-1263.319) (-1285.056) (-1274.962) -- 0:08:19
3000 -- [-1254.515] (-1262.629) (-1255.889) (-1265.807) * [-1253.928] (-1256.121) (-1284.450) (-1262.725) -- 0:05:32
4000 -- (-1265.417) (-1267.539) [-1255.046] (-1251.815) * (-1260.987) (-1251.903) (-1267.179) [-1249.686] -- 0:04:09
5000 -- (-1257.008) (-1272.509) [-1256.556] (-1251.425) * (-1254.801) (-1268.346) (-1264.421) [-1253.811] -- 0:06:38
Average standard deviation of split frequencies: 0.090444
6000 -- (-1264.319) (-1255.165) [-1254.794] (-1253.813) * (-1254.312) [-1258.141] (-1248.619) (-1257.028) -- 0:05:31
7000 -- (-1255.240) (-1255.982) (-1256.444) [-1249.205] * (-1255.510) (-1256.622) (-1258.671) [-1249.100] -- 0:04:43
8000 -- (-1256.572) [-1258.083] (-1256.186) (-1249.614) * (-1264.834) [-1260.125] (-1256.616) (-1250.594) -- 0:06:12
9000 -- (-1248.303) [-1251.160] (-1258.554) (-1248.621) * (-1247.706) (-1248.646) (-1269.917) [-1254.607] -- 0:05:30
10000 -- (-1250.939) (-1273.431) [-1259.339] (-1247.866) * (-1256.258) (-1259.364) (-1264.764) [-1250.154] -- 0:06:36
Average standard deviation of split frequencies: 0.073106
11000 -- (-1253.970) [-1244.937] (-1269.839) (-1247.433) * (-1258.062) [-1252.798] (-1257.659) (-1253.502) -- 0:05:59
12000 -- [-1253.995] (-1253.653) (-1266.799) (-1246.650) * (-1287.896) (-1258.096) (-1287.208) [-1246.207] -- 0:05:29
13000 -- (-1263.542) (-1259.740) [-1262.018] (-1255.314) * (-1264.218) (-1257.457) (-1284.437) [-1251.471] -- 0:06:19
14000 -- (-1264.339) (-1256.421) (-1258.673) [-1255.880] * (-1257.098) (-1249.807) (-1260.861) [-1246.402] -- 0:05:52
15000 -- (-1263.473) (-1254.970) [-1250.709] (-1259.079) * (-1254.056) (-1254.549) (-1265.699) [-1254.606] -- 0:06:34
Average standard deviation of split frequencies: 0.060381
16000 -- (-1275.651) (-1252.312) [-1257.372] (-1254.641) * (-1254.979) (-1263.892) (-1278.612) [-1251.276] -- 0:06:09
17000 -- (-1275.334) (-1257.895) [-1252.201] (-1258.410) * [-1247.066] (-1272.594) (-1268.398) (-1244.695) -- 0:05:46
18000 -- (-1257.295) (-1252.427) [-1253.209] (-1252.382) * [-1246.866] (-1262.430) (-1262.357) (-1252.652) -- 0:06:21
19000 -- (-1275.964) [-1250.295] (-1264.057) (-1253.164) * [-1253.135] (-1256.409) (-1268.164) (-1255.552) -- 0:06:01
20000 -- (-1317.783) (-1263.587) (-1256.497) [-1253.844] * (-1259.705) (-1262.475) (-1275.730) [-1253.287] -- 0:05:43
Average standard deviation of split frequencies: 0.056657
21000 -- (-1296.891) (-1258.574) (-1264.559) [-1249.681] * [-1254.894] (-1269.182) (-1260.763) (-1260.933) -- 0:06:12
22000 -- (-1299.286) (-1255.579) (-1267.455) [-1253.420] * [-1254.871] (-1252.199) (-1256.603) (-1266.836) -- 0:05:55
23000 -- (-1302.815) (-1250.680) [-1262.844] (-1261.693) * [-1249.444] (-1260.512) (-1253.813) (-1262.031) -- 0:06:22
24000 -- (-1306.591) [-1246.954] (-1266.358) (-1258.936) * (-1254.414) (-1251.035) (-1257.419) [-1257.340] -- 0:06:06
25000 -- (-1295.418) (-1252.542) [-1255.079] (-1255.664) * [-1247.647] (-1280.145) (-1258.393) (-1255.288) -- 0:05:51
Average standard deviation of split frequencies: 0.042890
26000 -- (-1296.639) (-1248.334) (-1262.253) [-1253.825] * (-1261.074) (-1304.918) (-1264.677) [-1252.078] -- 0:06:14
27000 -- (-1314.838) (-1256.846) (-1267.461) [-1252.858] * (-1251.780) (-1291.927) (-1264.986) [-1250.051] -- 0:06:00
28000 -- (-1297.778) [-1253.008] (-1269.207) (-1266.501) * [-1247.885] (-1292.926) (-1265.030) (-1252.826) -- 0:05:47
29000 -- (-1302.800) [-1250.434] (-1250.982) (-1254.335) * (-1255.985) (-1296.958) (-1254.787) [-1248.939] -- 0:06:08
30000 -- (-1308.281) (-1252.501) (-1251.922) [-1249.262] * (-1255.894) (-1292.182) (-1254.007) [-1247.325] -- 0:05:55
Average standard deviation of split frequencies: 0.041353
31000 -- (-1307.151) (-1249.720) [-1248.556] (-1251.348) * [-1247.675] (-1292.897) (-1245.601) (-1258.714) -- 0:06:15
32000 -- (-1305.816) (-1250.430) [-1244.381] (-1260.812) * [-1248.142] (-1301.720) (-1263.223) (-1254.831) -- 0:06:03
33000 -- (-1306.095) (-1246.713) [-1255.527] (-1248.487) * (-1258.776) (-1305.402) [-1249.328] (-1258.474) -- 0:05:51
34000 -- (-1305.623) [-1256.279] (-1257.760) (-1255.264) * (-1253.350) (-1304.690) [-1250.178] (-1265.826) -- 0:06:09
35000 -- (-1304.856) [-1252.134] (-1275.043) (-1252.774) * (-1258.194) (-1295.611) [-1244.449] (-1295.660) -- 0:05:58
Average standard deviation of split frequencies: 0.036262
36000 -- (-1309.222) [-1259.196] (-1266.091) (-1249.290) * [-1245.943] (-1312.134) (-1257.073) (-1301.014) -- 0:06:14
37000 -- (-1309.444) [-1250.884] (-1257.814) (-1252.858) * [-1250.834] (-1291.501) (-1255.884) (-1288.935) -- 0:06:04
38000 -- (-1304.151) (-1247.983) [-1247.061] (-1267.779) * (-1252.019) (-1288.937) [-1250.038] (-1286.756) -- 0:05:54
39000 -- (-1299.425) (-1252.753) (-1267.660) [-1248.947] * [-1248.702] (-1289.800) (-1248.918) (-1285.071) -- 0:06:09
40000 -- (-1301.778) (-1265.409) [-1250.406] (-1258.849) * (-1254.741) (-1300.959) [-1249.335] (-1291.409) -- 0:06:00
Average standard deviation of split frequencies: 0.038233
41000 -- (-1306.442) [-1250.826] (-1258.285) (-1249.216) * [-1250.493] (-1293.566) (-1251.632) (-1280.346) -- 0:06:14
42000 -- (-1314.552) [-1256.419] (-1253.383) (-1246.815) * (-1256.733) (-1287.431) [-1248.716] (-1272.870) -- 0:06:04
43000 -- (-1304.664) (-1255.689) (-1255.610) [-1253.136] * (-1254.445) (-1300.325) [-1247.751] (-1287.961) -- 0:05:56
44000 -- (-1306.682) [-1250.296] (-1247.867) (-1257.583) * [-1249.382] (-1293.262) (-1252.889) (-1286.666) -- 0:06:09
45000 -- (-1301.489) (-1246.748) (-1254.870) [-1247.761] * (-1255.280) (-1310.100) [-1256.406] (-1290.244) -- 0:06:00
Average standard deviation of split frequencies: 0.034697
46000 -- (-1309.973) (-1249.271) (-1246.063) [-1249.356] * (-1254.283) (-1304.339) [-1247.712] (-1285.327) -- 0:06:13
47000 -- (-1307.773) [-1254.110] (-1267.701) (-1267.408) * (-1253.649) (-1302.498) [-1250.138] (-1283.912) -- 0:06:04
48000 -- (-1312.343) (-1239.369) (-1251.593) [-1242.571] * (-1257.311) (-1296.318) [-1249.800] (-1289.815) -- 0:05:57
49000 -- (-1307.385) (-1248.278) [-1246.629] (-1249.059) * (-1251.952) (-1293.279) [-1254.300] (-1301.108) -- 0:06:08
50000 -- (-1302.637) [-1254.403] (-1254.523) (-1258.799) * (-1248.711) (-1303.428) [-1250.662] (-1298.244) -- 0:06:01
Average standard deviation of split frequencies: 0.033980
51000 -- (-1300.190) (-1262.331) [-1246.813] (-1267.048) * (-1254.864) (-1289.957) [-1254.626] (-1286.885) -- 0:05:53
52000 -- (-1302.402) [-1245.664] (-1244.602) (-1268.282) * [-1253.891] (-1291.954) (-1255.585) (-1289.391) -- 0:06:04
53000 -- (-1302.840) (-1251.377) [-1251.775] (-1258.135) * [-1253.059] (-1293.346) (-1261.322) (-1287.484) -- 0:05:57
54000 -- (-1301.114) [-1256.143] (-1258.804) (-1267.926) * [-1253.105] (-1288.051) (-1254.259) (-1293.572) -- 0:06:07
55000 -- (-1309.823) (-1262.050) [-1259.021] (-1251.145) * [-1253.188] (-1290.609) (-1256.260) (-1286.464) -- 0:06:00
Average standard deviation of split frequencies: 0.029532
56000 -- (-1304.408) (-1264.373) (-1251.319) [-1253.227] * [-1248.362] (-1291.604) (-1258.859) (-1283.044) -- 0:05:54
57000 -- (-1299.396) [-1250.375] (-1254.959) (-1256.970) * (-1251.035) (-1299.084) [-1247.924] (-1286.402) -- 0:06:03
58000 -- (-1297.860) [-1251.200] (-1248.971) (-1257.900) * [-1251.382] (-1303.319) (-1255.702) (-1280.035) -- 0:05:57
59000 -- (-1315.054) [-1245.139] (-1264.273) (-1250.235) * [-1249.178] (-1298.375) (-1253.437) (-1277.795) -- 0:05:50
60000 -- (-1316.141) (-1252.849) (-1253.838) [-1243.732] * (-1252.490) (-1294.930) [-1242.909] (-1291.452) -- 0:06:00
Average standard deviation of split frequencies: 0.030814
61000 -- (-1309.100) [-1247.941] (-1255.587) (-1261.618) * (-1254.574) (-1300.127) [-1258.258] (-1281.692) -- 0:05:54
62000 -- (-1309.788) [-1247.951] (-1256.371) (-1257.911) * [-1253.029] (-1311.373) (-1257.202) (-1287.306) -- 0:06:03
63000 -- (-1302.987) (-1256.746) [-1253.499] (-1257.212) * [-1245.707] (-1313.405) (-1245.179) (-1281.172) -- 0:05:56
64000 -- (-1306.180) (-1251.445) (-1251.666) [-1251.947] * [-1245.161] (-1290.623) (-1247.107) (-1285.579) -- 0:05:51
65000 -- (-1296.125) [-1249.307] (-1264.246) (-1246.521) * [-1250.688] (-1293.701) (-1253.092) (-1286.730) -- 0:05:59
Average standard deviation of split frequencies: 0.028150
66000 -- (-1294.112) [-1243.818] (-1257.123) (-1254.161) * (-1244.352) (-1291.420) [-1246.516] (-1288.197) -- 0:05:53
67000 -- (-1296.252) [-1246.699] (-1261.674) (-1263.457) * (-1261.138) (-1307.211) [-1251.370] (-1281.548) -- 0:06:02
68000 -- (-1302.066) [-1251.643] (-1261.079) (-1278.274) * (-1251.346) (-1295.251) [-1250.332] (-1284.092) -- 0:05:56
69000 -- (-1303.264) (-1258.089) [-1247.690] (-1255.967) * [-1247.638] (-1286.446) (-1251.026) (-1284.666) -- 0:05:50
70000 -- (-1302.025) (-1254.651) (-1261.990) [-1252.471] * [-1242.349] (-1289.530) (-1251.062) (-1295.354) -- 0:05:58
Average standard deviation of split frequencies: 0.025224
71000 -- (-1316.597) (-1249.373) (-1254.499) [-1252.346] * [-1244.402] (-1289.027) (-1252.102) (-1282.799) -- 0:05:53
72000 -- (-1319.242) [-1248.951] (-1258.155) (-1254.739) * [-1249.933] (-1285.366) (-1255.133) (-1290.928) -- 0:06:00
73000 -- (-1311.972) (-1255.397) (-1263.606) [-1248.705] * (-1250.600) (-1302.909) [-1249.447] (-1290.766) -- 0:05:55
74000 -- (-1306.157) (-1253.652) (-1250.935) [-1249.006] * (-1253.969) (-1288.716) [-1252.957] (-1285.208) -- 0:05:50
75000 -- (-1308.320) [-1244.584] (-1264.110) (-1245.600) * (-1248.616) (-1293.281) [-1251.962] (-1284.319) -- 0:05:57
Average standard deviation of split frequencies: 0.024617
76000 -- (-1297.807) [-1244.275] (-1254.645) (-1262.285) * [-1247.597] (-1306.489) (-1253.718) (-1284.973) -- 0:05:52
77000 -- (-1304.273) (-1250.670) [-1245.721] (-1258.953) * [-1250.208] (-1296.662) (-1266.073) (-1286.239) -- 0:05:47
78000 -- (-1310.868) (-1256.701) (-1260.356) [-1251.726] * [-1257.396] (-1287.591) (-1251.298) (-1280.819) -- 0:05:54
79000 -- (-1305.580) (-1247.975) (-1258.816) [-1250.760] * (-1249.021) (-1291.037) [-1251.596] (-1291.098) -- 0:05:49
80000 -- (-1311.832) (-1259.778) [-1246.562] (-1256.642) * [-1248.301] (-1304.301) (-1250.949) (-1289.578) -- 0:05:56
Average standard deviation of split frequencies: 0.024069
81000 -- (-1303.608) (-1256.703) (-1247.650) [-1248.440] * [-1253.688] (-1292.554) (-1259.397) (-1295.012) -- 0:05:51
82000 -- (-1327.503) (-1260.263) [-1245.539] (-1258.510) * [-1255.149] (-1296.104) (-1251.022) (-1291.438) -- 0:05:47
83000 -- (-1301.627) (-1263.403) (-1250.345) [-1256.499] * (-1256.201) (-1282.242) [-1251.490] (-1286.578) -- 0:05:53
84000 -- (-1301.233) (-1255.736) (-1251.438) [-1252.146] * (-1250.409) (-1293.520) [-1247.275] (-1274.417) -- 0:05:48
85000 -- (-1304.246) (-1250.825) (-1254.145) [-1248.376] * [-1256.868] (-1304.060) (-1248.253) (-1284.197) -- 0:05:44
Average standard deviation of split frequencies: 0.023414
86000 -- (-1308.395) (-1253.735) (-1254.681) [-1251.449] * [-1244.969] (-1297.331) (-1244.518) (-1287.495) -- 0:05:50
87000 -- (-1308.554) (-1255.970) (-1249.746) [-1245.551] * [-1252.621] (-1295.556) (-1252.039) (-1303.839) -- 0:05:46
88000 -- (-1302.350) (-1263.589) (-1247.678) [-1249.519] * [-1249.437] (-1288.735) (-1255.409) (-1299.123) -- 0:05:52
89000 -- (-1294.854) (-1252.324) (-1250.444) [-1255.906] * (-1272.295) (-1301.089) [-1251.892] (-1287.152) -- 0:05:48
90000 -- (-1297.111) (-1260.472) [-1248.835] (-1258.972) * [-1247.979] (-1295.566) (-1251.163) (-1294.218) -- 0:05:43
Average standard deviation of split frequencies: 0.022422
91000 -- (-1297.092) (-1265.273) (-1261.141) [-1249.013] * [-1244.724] (-1286.677) (-1255.709) (-1296.563) -- 0:05:49
92000 -- (-1303.896) [-1246.431] (-1251.974) (-1257.076) * (-1250.445) (-1292.611) [-1251.090] (-1287.637) -- 0:05:45
93000 -- (-1298.777) (-1266.097) [-1253.027] (-1246.978) * (-1263.389) (-1298.525) [-1253.112] (-1294.390) -- 0:05:51
94000 -- (-1300.985) (-1267.120) (-1259.146) [-1251.005] * [-1254.464] (-1302.760) (-1255.288) (-1283.075) -- 0:05:46
95000 -- (-1301.601) (-1256.983) [-1255.971] (-1264.135) * (-1257.991) (-1289.782) [-1249.253] (-1282.983) -- 0:05:42
Average standard deviation of split frequencies: 0.022506
96000 -- (-1304.230) (-1252.295) (-1257.961) [-1247.195] * [-1254.357] (-1298.334) (-1256.733) (-1295.252) -- 0:05:48
97000 -- (-1303.614) (-1247.279) [-1251.232] (-1252.556) * [-1254.196] (-1283.388) (-1259.912) (-1293.691) -- 0:05:44
98000 -- (-1310.710) (-1254.245) (-1255.803) [-1253.652] * (-1256.600) (-1304.121) [-1251.144] (-1286.111) -- 0:05:40
99000 -- (-1294.297) [-1249.147] (-1255.690) (-1248.915) * [-1249.910] (-1292.610) (-1256.155) (-1280.657) -- 0:05:45
100000 -- (-1292.262) (-1262.202) [-1250.798] (-1252.714) * [-1253.494] (-1288.118) (-1265.186) (-1295.235) -- 0:05:42
Average standard deviation of split frequencies: 0.022339
101000 -- (-1299.590) (-1249.618) [-1252.490] (-1258.947) * (-1250.934) (-1314.145) [-1250.397] (-1282.098) -- 0:05:47
102000 -- (-1305.447) [-1254.900] (-1256.161) (-1264.480) * (-1254.713) (-1290.552) [-1245.388] (-1289.172) -- 0:05:43
103000 -- (-1303.538) (-1252.055) [-1255.529] (-1263.796) * (-1253.485) (-1311.210) [-1251.279] (-1283.675) -- 0:05:39
104000 -- (-1312.179) [-1250.838] (-1244.699) (-1253.825) * [-1253.783] (-1304.397) (-1257.021) (-1279.297) -- 0:05:44
105000 -- (-1309.882) [-1248.669] (-1249.864) (-1247.921) * (-1260.379) (-1289.982) [-1246.741] (-1282.151) -- 0:05:40
Average standard deviation of split frequencies: 0.021307
106000 -- (-1321.853) [-1249.235] (-1258.420) (-1258.039) * [-1253.257] (-1303.402) (-1251.200) (-1284.321) -- 0:05:37
107000 -- (-1306.969) [-1258.580] (-1251.820) (-1251.772) * (-1254.424) (-1297.918) [-1250.877] (-1282.488) -- 0:05:42
108000 -- (-1310.833) [-1250.374] (-1270.206) (-1247.793) * [-1253.636] (-1301.457) (-1248.609) (-1288.831) -- 0:05:38
109000 -- (-1306.703) [-1254.631] (-1258.450) (-1255.307) * (-1265.193) (-1303.893) [-1254.830] (-1296.740) -- 0:05:43
110000 -- (-1307.522) (-1252.934) (-1262.771) [-1253.082] * [-1250.631] (-1299.717) (-1256.047) (-1289.072) -- 0:05:39
Average standard deviation of split frequencies: 0.021831
111000 -- (-1315.714) (-1256.491) (-1266.608) [-1253.391] * [-1254.957] (-1301.335) (-1252.417) (-1279.846) -- 0:05:36
112000 -- (-1297.150) (-1257.710) (-1262.319) [-1256.846] * (-1255.246) (-1301.931) [-1245.939] (-1277.758) -- 0:05:40
113000 -- (-1300.645) (-1246.896) (-1265.159) [-1252.316] * (-1249.484) (-1299.800) [-1249.359] (-1282.414) -- 0:05:37
114000 -- (-1305.782) [-1249.905] (-1252.754) (-1252.012) * [-1257.826] (-1293.356) (-1252.042) (-1283.112) -- 0:05:41
115000 -- (-1300.087) (-1251.127) (-1262.357) [-1257.427] * (-1249.754) (-1298.114) [-1250.530] (-1286.809) -- 0:05:38
Average standard deviation of split frequencies: 0.021318
116000 -- (-1290.800) [-1252.353] (-1250.317) (-1254.653) * [-1248.346] (-1300.327) (-1266.689) (-1285.046) -- 0:05:35
117000 -- (-1289.136) [-1256.667] (-1261.510) (-1252.488) * [-1258.667] (-1295.508) (-1255.345) (-1279.988) -- 0:05:39
118000 -- (-1296.789) (-1273.372) [-1259.194] (-1252.713) * (-1247.983) (-1312.002) [-1257.884] (-1278.755) -- 0:05:36
119000 -- (-1306.841) (-1269.429) (-1253.227) [-1247.697] * [-1245.543] (-1306.979) (-1258.678) (-1279.233) -- 0:05:33
120000 -- (-1297.086) (-1258.225) (-1248.302) [-1251.776] * (-1251.951) (-1305.793) [-1257.445] (-1278.961) -- 0:05:37
Average standard deviation of split frequencies: 0.021255
121000 -- (-1302.835) [-1247.271] (-1254.140) (-1256.343) * (-1246.801) (-1294.973) [-1241.362] (-1275.876) -- 0:05:34
122000 -- (-1299.772) (-1248.787) [-1249.157] (-1261.371) * (-1247.599) (-1293.499) [-1246.759] (-1285.831) -- 0:05:38
123000 -- (-1309.520) (-1257.818) (-1264.553) [-1253.292] * [-1252.657] (-1301.464) (-1251.928) (-1284.138) -- 0:05:35
124000 -- (-1310.896) (-1259.650) [-1252.768] (-1258.196) * [-1254.453] (-1300.830) (-1260.630) (-1284.923) -- 0:05:32
125000 -- (-1308.301) (-1244.199) (-1249.814) [-1250.681] * (-1262.517) (-1301.410) [-1264.541] (-1278.453) -- 0:05:36
Average standard deviation of split frequencies: 0.020485
126000 -- (-1307.138) [-1255.034] (-1255.563) (-1250.305) * [-1250.418] (-1294.612) (-1250.753) (-1294.496) -- 0:05:32
127000 -- (-1313.273) (-1257.427) [-1245.481] (-1250.190) * [-1249.128] (-1296.039) (-1251.733) (-1282.403) -- 0:05:36
128000 -- (-1314.626) (-1252.781) (-1252.683) [-1257.981] * [-1247.288] (-1289.908) (-1260.161) (-1277.176) -- 0:05:33
129000 -- (-1310.427) (-1246.572) (-1249.696) [-1249.269] * [-1250.278] (-1298.017) (-1249.758) (-1285.566) -- 0:05:30
130000 -- (-1303.931) [-1251.788] (-1254.984) (-1251.430) * [-1248.970] (-1287.765) (-1251.819) (-1289.039) -- 0:05:34
Average standard deviation of split frequencies: 0.021165
131000 -- (-1307.744) [-1250.688] (-1258.620) (-1270.771) * (-1253.527) (-1301.647) [-1248.258] (-1288.595) -- 0:05:31
132000 -- (-1308.954) (-1259.370) [-1246.376] (-1276.767) * (-1251.239) (-1308.890) [-1251.541] (-1275.741) -- 0:05:28
133000 -- (-1305.161) [-1245.902] (-1246.927) (-1257.862) * (-1252.163) (-1295.030) [-1257.206] (-1279.429) -- 0:05:32
134000 -- (-1309.712) (-1252.675) [-1253.705] (-1252.129) * [-1253.243] (-1284.619) (-1246.352) (-1285.236) -- 0:05:29
135000 -- (-1317.715) (-1253.641) (-1260.416) [-1243.373] * [-1253.128] (-1306.056) (-1249.879) (-1282.886) -- 0:05:33
Average standard deviation of split frequencies: 0.020426
136000 -- (-1311.167) (-1266.626) [-1250.448] (-1250.230) * (-1248.127) (-1300.014) [-1250.488] (-1292.541) -- 0:05:30
137000 -- (-1319.384) [-1250.622] (-1259.824) (-1248.044) * [-1246.752] (-1299.263) (-1252.628) (-1276.592) -- 0:05:27
138000 -- (-1310.243) (-1261.368) (-1254.618) [-1248.713] * (-1250.147) (-1294.813) [-1256.579] (-1285.536) -- 0:05:31
139000 -- (-1305.508) (-1254.128) (-1255.798) [-1251.035] * [-1247.886] (-1297.617) (-1257.648) (-1285.584) -- 0:05:28
140000 -- (-1302.079) (-1258.508) (-1251.765) [-1248.738] * (-1250.936) (-1282.872) [-1252.275] (-1292.534) -- 0:05:25
Average standard deviation of split frequencies: 0.020604
141000 -- (-1306.335) (-1273.604) (-1243.826) [-1246.793] * [-1248.082] (-1292.737) (-1256.934) (-1283.193) -- 0:05:28
142000 -- (-1301.083) (-1263.858) (-1256.190) [-1244.030] * [-1248.129] (-1292.101) (-1250.654) (-1281.506) -- 0:05:26
143000 -- (-1303.778) [-1256.314] (-1265.560) (-1251.126) * (-1248.706) (-1292.365) [-1254.455] (-1283.037) -- 0:05:29
144000 -- (-1295.062) [-1247.050] (-1243.664) (-1252.944) * [-1252.996] (-1302.460) (-1252.318) (-1292.979) -- 0:05:26
145000 -- (-1295.343) [-1245.148] (-1248.819) (-1247.183) * [-1245.379] (-1290.452) (-1263.431) (-1294.130) -- 0:05:24
Average standard deviation of split frequencies: 0.020610
146000 -- (-1291.429) (-1253.230) (-1258.642) [-1250.971] * [-1253.870] (-1302.953) (-1255.607) (-1288.660) -- 0:05:27
147000 -- (-1293.736) (-1256.210) [-1245.157] (-1256.100) * [-1251.677] (-1295.871) (-1258.906) (-1295.306) -- 0:05:24
148000 -- (-1313.721) [-1250.040] (-1247.617) (-1251.034) * [-1245.522] (-1288.337) (-1254.673) (-1286.166) -- 0:05:28
149000 -- (-1296.606) [-1252.213] (-1250.306) (-1249.632) * (-1246.894) (-1291.009) [-1252.055] (-1278.414) -- 0:05:25
150000 -- (-1293.339) (-1248.181) (-1259.485) [-1254.271] * [-1249.423] (-1298.240) (-1248.433) (-1292.114) -- 0:05:23
Average standard deviation of split frequencies: 0.019479
151000 -- (-1298.426) [-1250.895] (-1263.440) (-1251.003) * (-1247.025) (-1294.804) [-1253.419] (-1287.735) -- 0:05:26
152000 -- (-1298.376) (-1254.356) (-1258.027) [-1246.690] * (-1252.094) (-1298.402) [-1254.905] (-1280.688) -- 0:05:23
153000 -- (-1303.836) (-1245.779) (-1253.294) [-1252.881] * (-1253.425) (-1310.276) [-1246.199] (-1285.781) -- 0:05:21
154000 -- (-1308.146) [-1244.642] (-1253.225) (-1258.035) * [-1250.311] (-1299.511) (-1264.699) (-1290.824) -- 0:05:24
155000 -- (-1315.136) [-1243.372] (-1246.176) (-1264.136) * (-1257.239) (-1286.436) [-1248.147] (-1291.347) -- 0:05:21
Average standard deviation of split frequencies: 0.020505
156000 -- (-1307.476) (-1252.184) [-1246.740] (-1261.427) * [-1251.867] (-1294.750) (-1250.000) (-1291.187) -- 0:05:24
157000 -- (-1294.320) [-1255.643] (-1269.485) (-1250.685) * [-1253.104] (-1289.834) (-1251.273) (-1290.118) -- 0:05:22
158000 -- (-1292.996) (-1256.919) (-1259.086) [-1251.072] * (-1255.138) (-1301.527) [-1257.722] (-1284.677) -- 0:05:19
159000 -- (-1299.383) [-1253.679] (-1253.005) (-1261.801) * [-1249.881] (-1300.811) (-1251.296) (-1289.341) -- 0:05:22
160000 -- (-1301.417) (-1258.383) [-1247.153] (-1252.514) * (-1250.571) (-1294.647) [-1250.380] (-1285.119) -- 0:05:20
Average standard deviation of split frequencies: 0.019333
161000 -- (-1305.555) (-1266.693) (-1261.040) [-1244.015] * (-1248.660) (-1295.469) [-1253.113] (-1278.106) -- 0:05:17
162000 -- (-1296.397) (-1246.837) [-1254.512] (-1256.615) * [-1249.855] (-1306.856) (-1247.327) (-1280.598) -- 0:05:20
163000 -- (-1306.216) [-1250.204] (-1248.529) (-1263.848) * [-1247.195] (-1301.839) (-1246.853) (-1280.330) -- 0:05:18
164000 -- (-1305.351) (-1252.927) [-1246.190] (-1253.424) * [-1255.840] (-1300.408) (-1251.854) (-1286.920) -- 0:05:21
165000 -- (-1307.428) (-1259.339) [-1249.574] (-1256.178) * (-1252.639) (-1297.477) [-1244.366] (-1292.172) -- 0:05:18
Average standard deviation of split frequencies: 0.018675
166000 -- (-1301.772) [-1244.945] (-1253.594) (-1252.015) * [-1251.111] (-1293.420) (-1246.741) (-1289.448) -- 0:05:16
167000 -- (-1300.101) (-1258.458) (-1260.985) [-1251.793] * (-1254.453) (-1310.239) [-1248.017] (-1290.269) -- 0:05:19
168000 -- (-1301.706) (-1254.674) [-1256.163] (-1258.042) * (-1246.161) (-1296.877) [-1247.453] (-1290.251) -- 0:05:16
169000 -- (-1308.021) [-1243.715] (-1255.306) (-1258.178) * (-1253.249) (-1298.812) [-1251.705] (-1290.129) -- 0:05:14
170000 -- (-1314.345) (-1252.474) (-1261.098) [-1252.327] * [-1251.707] (-1293.897) (-1249.997) (-1285.703) -- 0:05:17
Average standard deviation of split frequencies: 0.017820
171000 -- (-1299.441) (-1246.089) (-1266.032) [-1260.876] * (-1255.195) (-1296.636) [-1246.672] (-1293.159) -- 0:05:15
172000 -- (-1304.067) (-1247.490) (-1257.115) [-1250.106] * (-1248.611) (-1306.912) [-1242.342] (-1288.258) -- 0:05:17
173000 -- (-1301.349) (-1250.100) (-1260.844) [-1244.661] * (-1247.320) (-1291.384) [-1247.309] (-1285.222) -- 0:05:15
174000 -- (-1299.344) [-1250.329] (-1256.962) (-1250.927) * (-1253.789) (-1295.659) [-1246.780] (-1287.171) -- 0:05:13
175000 -- (-1297.902) [-1254.326] (-1254.291) (-1247.236) * [-1248.474] (-1304.248) (-1251.059) (-1278.120) -- 0:05:15
Average standard deviation of split frequencies: 0.017621
176000 -- (-1305.155) [-1245.721] (-1266.561) (-1253.244) * [-1250.331] (-1292.705) (-1250.810) (-1288.044) -- 0:05:13
177000 -- (-1306.416) [-1252.003] (-1259.809) (-1253.654) * [-1249.297] (-1298.041) (-1259.171) (-1288.618) -- 0:05:16
178000 -- (-1306.624) [-1248.232] (-1265.855) (-1267.353) * [-1251.309] (-1298.085) (-1251.677) (-1283.343) -- 0:05:14
179000 -- (-1308.620) (-1256.912) (-1259.360) [-1256.972] * [-1252.963] (-1298.141) (-1268.617) (-1279.981) -- 0:05:11
180000 -- (-1324.783) [-1250.905] (-1249.677) (-1251.115) * (-1249.446) (-1295.070) [-1250.344] (-1303.506) -- 0:05:14
Average standard deviation of split frequencies: 0.017250
181000 -- (-1301.874) [-1249.203] (-1269.822) (-1247.190) * (-1254.694) (-1296.018) [-1255.189] (-1297.935) -- 0:05:12
182000 -- (-1297.483) (-1242.619) (-1259.825) [-1251.844] * (-1257.129) (-1309.518) [-1247.631] (-1291.582) -- 0:05:10
183000 -- (-1304.763) [-1242.939] (-1257.623) (-1257.850) * (-1256.796) (-1292.685) [-1250.239] (-1285.937) -- 0:05:12
184000 -- (-1306.959) (-1248.775) [-1247.304] (-1263.426) * (-1246.473) (-1297.834) [-1249.279] (-1290.366) -- 0:05:10
185000 -- (-1302.912) [-1250.791] (-1258.566) (-1272.091) * [-1248.313] (-1300.873) (-1251.949) (-1284.653) -- 0:05:12
Average standard deviation of split frequencies: 0.016366
186000 -- (-1306.957) [-1244.208] (-1254.494) (-1255.217) * (-1255.859) (-1300.567) [-1251.529] (-1291.412) -- 0:05:10
187000 -- (-1305.605) [-1250.113] (-1256.221) (-1270.627) * (-1252.742) (-1288.750) [-1243.799] (-1294.745) -- 0:05:08
188000 -- (-1314.403) (-1250.644) [-1247.310] (-1257.588) * (-1251.049) (-1302.554) [-1251.467] (-1286.139) -- 0:05:10
189000 -- (-1300.847) (-1254.710) [-1250.218] (-1248.634) * (-1261.814) (-1302.680) [-1251.279] (-1284.222) -- 0:05:08
190000 -- (-1313.001) [-1249.805] (-1258.022) (-1261.632) * [-1252.915] (-1287.396) (-1253.522) (-1293.591) -- 0:05:06
Average standard deviation of split frequencies: 0.016424
191000 -- (-1303.314) [-1246.983] (-1252.407) (-1256.745) * [-1247.395] (-1299.676) (-1263.696) (-1286.740) -- 0:05:09
192000 -- (-1301.893) (-1252.498) (-1244.185) [-1265.022] * (-1249.506) (-1299.864) [-1242.346] (-1276.308) -- 0:05:07
193000 -- (-1302.649) [-1254.679] (-1253.109) (-1255.507) * (-1254.138) (-1299.165) [-1249.529] (-1302.374) -- 0:05:09
194000 -- (-1310.308) [-1252.316] (-1252.688) (-1257.772) * (-1253.157) (-1315.020) [-1252.483] (-1288.961) -- 0:05:07
195000 -- (-1301.128) (-1252.278) (-1264.790) [-1252.078] * (-1250.778) (-1309.600) [-1246.311] (-1285.163) -- 0:05:05
Average standard deviation of split frequencies: 0.015977
196000 -- (-1297.799) (-1245.303) [-1245.645] (-1273.346) * (-1253.563) (-1312.135) [-1246.977] (-1287.796) -- 0:05:07
197000 -- (-1308.713) (-1259.768) [-1259.155] (-1253.478) * (-1249.554) (-1300.938) [-1250.254] (-1290.770) -- 0:05:05
198000 -- (-1319.107) (-1249.431) [-1254.382] (-1250.597) * [-1249.723] (-1295.993) (-1253.515) (-1281.881) -- 0:05:03
199000 -- (-1303.553) (-1261.360) (-1256.629) [-1247.394] * [-1246.932] (-1291.518) (-1257.184) (-1293.956) -- 0:05:05
200000 -- (-1312.450) (-1269.712) (-1251.322) [-1264.673] * (-1249.975) (-1293.158) [-1251.338] (-1289.205) -- 0:05:04
Average standard deviation of split frequencies: 0.015932
201000 -- (-1299.658) (-1254.685) [-1257.418] (-1249.795) * [-1247.777] (-1291.653) (-1248.822) (-1290.911) -- 0:05:06
202000 -- (-1304.583) (-1253.682) (-1253.040) [-1256.867] * [-1249.381] (-1292.571) (-1250.258) (-1284.305) -- 0:05:04
203000 -- (-1313.166) (-1262.781) (-1261.193) [-1247.643] * [-1253.715] (-1282.730) (-1264.136) (-1292.408) -- 0:05:02
204000 -- (-1306.342) (-1265.122) [-1245.007] (-1257.926) * (-1258.151) (-1292.969) [-1261.849] (-1285.330) -- 0:05:04
205000 -- (-1309.609) (-1262.014) [-1250.124] (-1244.869) * [-1249.551] (-1289.485) (-1258.549) (-1290.401) -- 0:05:02
Average standard deviation of split frequencies: 0.014332
206000 -- (-1302.870) (-1249.101) [-1254.477] (-1244.825) * (-1251.531) (-1286.875) [-1246.049] (-1275.495) -- 0:05:00
207000 -- (-1297.264) (-1258.935) (-1259.674) [-1247.231] * [-1252.913] (-1299.265) (-1249.207) (-1281.519) -- 0:05:02
208000 -- (-1297.154) (-1269.847) [-1247.817] (-1252.949) * (-1252.713) (-1309.941) [-1253.794] (-1289.659) -- 0:05:00
209000 -- (-1300.659) (-1270.232) [-1251.188] (-1250.911) * (-1257.208) (-1291.785) [-1251.819] (-1287.222) -- 0:05:02
210000 -- (-1303.278) (-1258.688) [-1250.203] (-1251.409) * (-1258.225) (-1291.091) [-1249.141] (-1289.790) -- 0:05:00
Average standard deviation of split frequencies: 0.014305
211000 -- (-1298.373) (-1253.993) (-1257.812) [-1257.842] * (-1256.837) (-1303.197) [-1246.832] (-1282.476) -- 0:04:59
212000 -- (-1300.313) (-1265.044) (-1251.414) [-1253.367] * (-1251.082) (-1313.032) [-1248.307] (-1280.851) -- 0:05:01
213000 -- (-1304.745) (-1258.149) [-1256.826] (-1255.635) * (-1256.756) (-1293.408) [-1257.497] (-1292.084) -- 0:04:59
214000 -- (-1302.664) (-1255.570) [-1248.550] (-1257.915) * [-1246.182] (-1308.452) (-1248.149) (-1294.140) -- 0:04:57
215000 -- (-1305.336) (-1258.072) [-1254.787] (-1260.127) * (-1254.796) (-1299.985) [-1253.325] (-1277.480) -- 0:04:59
Average standard deviation of split frequencies: 0.014511
216000 -- (-1328.943) (-1252.976) (-1249.661) [-1249.879] * [-1255.373] (-1302.350) (-1254.612) (-1287.988) -- 0:04:57
217000 -- (-1301.970) (-1248.021) [-1250.725] (-1268.660) * [-1250.304] (-1290.064) (-1248.921) (-1286.997) -- 0:04:59
218000 -- (-1313.006) (-1251.063) (-1258.645) [-1255.965] * (-1248.651) (-1299.130) [-1248.352] (-1286.752) -- 0:04:57
219000 -- (-1307.999) [-1251.492] (-1253.724) (-1247.910) * [-1252.907] (-1297.210) (-1248.633) (-1282.224) -- 0:04:55
220000 -- (-1301.251) [-1258.397] (-1262.408) (-1250.622) * (-1254.809) (-1294.694) [-1254.664] (-1298.298) -- 0:04:57
Average standard deviation of split frequencies: 0.014790
221000 -- (-1323.287) [-1244.209] (-1269.143) (-1252.473) * [-1254.906] (-1298.621) (-1246.982) (-1298.982) -- 0:04:56
222000 -- (-1313.278) (-1259.383) (-1252.576) [-1248.843] * (-1257.138) (-1293.440) [-1246.590] (-1289.131) -- 0:04:54
223000 -- (-1305.518) (-1256.894) [-1252.641] (-1242.749) * (-1265.949) (-1293.728) [-1252.925] (-1277.340) -- 0:04:56
224000 -- (-1304.277) (-1258.356) [-1254.860] (-1254.123) * (-1260.687) (-1292.957) [-1252.143] (-1281.500) -- 0:04:54
225000 -- (-1311.632) (-1258.673) [-1250.820] (-1253.578) * (-1256.036) (-1290.102) [-1253.826] (-1279.175) -- 0:04:56
Average standard deviation of split frequencies: 0.014184
226000 -- (-1309.363) (-1261.132) (-1254.687) [-1245.316] * (-1248.068) (-1303.512) [-1246.718] (-1295.514) -- 0:04:54
227000 -- (-1296.583) (-1311.273) [-1246.783] (-1257.220) * (-1257.694) (-1296.431) [-1259.868] (-1280.773) -- 0:04:52
228000 -- (-1305.598) (-1293.844) [-1249.116] (-1251.508) * [-1260.736] (-1307.049) (-1252.217) (-1277.574) -- 0:04:54
229000 -- (-1300.891) (-1295.893) [-1249.151] (-1255.689) * [-1255.539] (-1289.715) (-1253.908) (-1285.451) -- 0:04:52
230000 -- (-1311.127) (-1292.793) (-1250.154) [-1250.381] * (-1253.865) (-1299.423) [-1254.291] (-1275.781) -- 0:04:51
Average standard deviation of split frequencies: 0.014306
231000 -- (-1296.682) (-1306.339) [-1251.935] (-1245.758) * (-1251.919) (-1293.543) [-1265.298] (-1283.268) -- 0:04:52
232000 -- (-1300.445) (-1293.047) [-1251.031] (-1250.738) * (-1254.770) (-1296.760) [-1265.178] (-1288.387) -- 0:04:51
233000 -- (-1295.145) (-1291.905) [-1250.346] (-1252.152) * (-1264.291) (-1293.153) [-1255.752] (-1294.230) -- 0:04:52
234000 -- (-1306.918) (-1298.013) [-1249.312] (-1247.691) * [-1249.903] (-1296.037) (-1258.095) (-1283.537) -- 0:04:51
235000 -- (-1306.624) (-1298.522) (-1250.494) [-1250.044] * (-1255.305) (-1298.171) [-1252.530] (-1286.526) -- 0:04:49
Average standard deviation of split frequencies: 0.013604
236000 -- (-1294.768) (-1298.962) (-1255.540) [-1249.081] * [-1250.552] (-1298.138) (-1254.789) (-1283.797) -- 0:04:51
237000 -- (-1299.925) (-1299.652) (-1250.491) [-1254.718] * (-1247.554) (-1293.247) [-1253.189] (-1299.974) -- 0:04:49
238000 -- (-1316.705) (-1302.960) [-1251.051] (-1249.329) * (-1250.955) (-1308.477) [-1248.630] (-1276.735) -- 0:04:51
239000 -- (-1306.455) (-1288.147) [-1252.478] (-1246.887) * [-1247.503] (-1299.943) (-1249.717) (-1279.257) -- 0:04:49
240000 -- (-1297.271) (-1313.298) (-1256.841) [-1250.493] * (-1245.362) (-1295.803) [-1252.041] (-1291.716) -- 0:04:48
Average standard deviation of split frequencies: 0.013886
241000 -- (-1297.661) (-1302.976) [-1245.708] (-1257.299) * (-1253.039) (-1299.752) [-1254.644] (-1275.843) -- 0:04:49
242000 -- (-1291.757) (-1294.211) (-1256.887) [-1243.641] * (-1249.876) (-1301.232) [-1249.669] (-1288.909) -- 0:04:48
243000 -- (-1312.246) (-1296.786) (-1272.631) [-1250.516] * (-1249.244) (-1290.144) [-1249.042] (-1286.178) -- 0:04:46
244000 -- (-1298.306) (-1303.840) (-1253.342) [-1253.100] * [-1245.797] (-1297.043) (-1271.274) (-1296.316) -- 0:04:48
245000 -- (-1305.265) (-1294.747) [-1247.583] (-1249.921) * (-1245.521) (-1293.206) [-1251.396] (-1281.092) -- 0:04:46
Average standard deviation of split frequencies: 0.013511
246000 -- (-1301.071) (-1301.898) (-1257.975) [-1244.791] * (-1246.883) (-1288.797) [-1252.384] (-1287.652) -- 0:04:48
247000 -- (-1301.682) (-1311.572) (-1254.656) [-1258.412] * [-1249.753] (-1295.455) (-1247.441) (-1277.839) -- 0:04:46
248000 -- (-1305.423) (-1303.006) [-1252.544] (-1251.300) * (-1256.082) (-1303.079) [-1242.384] (-1280.715) -- 0:04:45
249000 -- (-1307.420) (-1289.532) [-1257.432] (-1251.419) * (-1261.281) (-1289.707) [-1245.232] (-1286.278) -- 0:04:46
250000 -- (-1309.811) (-1302.518) [-1257.900] (-1256.687) * (-1256.924) (-1290.720) [-1246.819] (-1284.213) -- 0:04:45
Average standard deviation of split frequencies: 0.013263
251000 -- (-1291.387) (-1301.173) (-1253.744) [-1256.337] * (-1249.623) (-1290.488) [-1243.259] (-1285.835) -- 0:04:43
252000 -- (-1294.021) (-1305.800) [-1254.780] (-1245.379) * (-1258.600) (-1300.090) [-1241.132] (-1286.103) -- 0:04:44
253000 -- (-1304.768) (-1293.904) [-1250.630] (-1253.955) * [-1249.542] (-1303.154) (-1253.342) (-1286.127) -- 0:04:43
254000 -- (-1319.938) (-1298.663) (-1249.235) [-1251.148] * [-1249.109] (-1297.139) (-1254.921) (-1285.291) -- 0:04:44
255000 -- (-1298.322) (-1298.984) [-1249.366] (-1251.371) * (-1256.507) (-1301.147) [-1251.648] (-1288.260) -- 0:04:43
Average standard deviation of split frequencies: 0.013426
256000 -- (-1296.995) (-1296.529) [-1245.408] (-1245.814) * [-1252.602] (-1287.492) (-1256.970) (-1279.995) -- 0:04:41
257000 -- (-1296.401) (-1298.085) (-1260.787) [-1243.548] * [-1241.571] (-1303.935) (-1254.009) (-1286.075) -- 0:04:43
258000 -- (-1302.527) (-1302.328) [-1247.752] (-1254.374) * (-1253.569) (-1287.918) [-1255.517] (-1297.052) -- 0:04:41
259000 -- (-1291.576) (-1299.345) (-1260.673) [-1259.087] * [-1246.188] (-1299.836) (-1250.344) (-1282.122) -- 0:04:40
260000 -- (-1294.227) (-1306.913) (-1263.496) [-1254.094] * [-1250.370] (-1296.018) (-1257.729) (-1301.056) -- 0:04:41
Average standard deviation of split frequencies: 0.013218
261000 -- (-1288.987) (-1310.479) (-1261.079) [-1252.133] * [-1248.701] (-1296.069) (-1250.874) (-1279.376) -- 0:04:40
262000 -- (-1299.692) (-1303.146) (-1256.244) [-1250.359] * (-1254.205) (-1296.526) [-1251.285] (-1290.084) -- 0:04:41
263000 -- (-1305.606) (-1296.481) [-1255.067] (-1251.340) * [-1253.438] (-1302.617) (-1251.791) (-1279.130) -- 0:04:40
264000 -- (-1295.788) (-1296.510) (-1254.080) [-1248.808] * [-1251.942] (-1310.566) (-1252.804) (-1282.016) -- 0:04:38
265000 -- (-1299.903) (-1294.081) [-1252.718] (-1258.105) * [-1248.863] (-1293.467) (-1250.527) (-1290.345) -- 0:04:40
Average standard deviation of split frequencies: 0.012886
266000 -- (-1297.178) (-1295.945) (-1253.260) [-1248.324] * [-1247.150] (-1295.274) (-1259.666) (-1293.640) -- 0:04:38
267000 -- (-1299.681) (-1296.441) (-1255.142) [-1248.030] * [-1251.843] (-1292.285) (-1262.032) (-1279.049) -- 0:04:40
268000 -- (-1297.397) (-1296.150) (-1249.801) [-1250.049] * (-1254.648) (-1294.010) [-1252.785] (-1283.628) -- 0:04:38
269000 -- (-1302.335) (-1299.662) (-1249.759) [-1250.855] * (-1255.096) (-1294.087) [-1252.328] (-1284.091) -- 0:04:37
270000 -- (-1288.219) (-1292.957) [-1251.615] (-1249.290) * (-1256.274) (-1291.272) [-1252.266] (-1287.053) -- 0:04:38
Average standard deviation of split frequencies: 0.012280
271000 -- (-1307.104) (-1297.508) [-1256.910] (-1249.852) * (-1250.481) (-1290.387) [-1246.416] (-1287.154) -- 0:04:37
272000 -- (-1302.456) (-1293.254) [-1252.691] (-1254.243) * [-1250.751] (-1289.508) (-1248.668) (-1282.918) -- 0:04:35
273000 -- (-1299.704) (-1300.306) (-1246.569) [-1248.930] * (-1252.853) (-1305.207) [-1249.772] (-1291.920) -- 0:04:36
274000 -- (-1310.799) (-1290.382) [-1250.301] (-1250.482) * (-1259.644) (-1304.598) [-1251.176] (-1279.447) -- 0:04:35
275000 -- (-1295.718) (-1287.659) [-1251.141] (-1250.942) * [-1255.845] (-1300.926) (-1251.485) (-1284.782) -- 0:04:36
Average standard deviation of split frequencies: 0.011986
276000 -- (-1301.513) (-1288.604) (-1249.303) [-1250.121] * [-1257.027] (-1295.715) (-1259.913) (-1297.796) -- 0:04:35
277000 -- (-1296.842) (-1298.564) [-1248.515] (-1246.499) * [-1250.490] (-1290.911) (-1256.120) (-1284.344) -- 0:04:34
278000 -- (-1298.835) (-1301.839) [-1247.962] (-1246.966) * (-1253.980) (-1287.650) [-1252.250] (-1285.844) -- 0:04:35
279000 -- (-1299.327) (-1316.030) [-1254.807] (-1250.872) * [-1253.998] (-1289.775) (-1263.960) (-1296.522) -- 0:04:33
280000 -- (-1299.548) (-1290.060) (-1251.471) [-1250.550] * (-1257.189) (-1305.347) [-1247.714] (-1294.098) -- 0:04:32
Average standard deviation of split frequencies: 0.012410
281000 -- (-1297.587) (-1298.683) (-1247.726) [-1250.212] * (-1252.856) (-1292.846) [-1246.922] (-1289.336) -- 0:04:33
282000 -- (-1291.696) (-1304.391) [-1253.519] (-1248.740) * (-1255.824) (-1298.195) [-1254.636] (-1276.949) -- 0:04:32
283000 -- (-1295.129) (-1289.023) [-1247.963] (-1258.594) * (-1251.984) (-1300.191) [-1246.871] (-1279.283) -- 0:04:33
284000 -- (-1300.311) (-1289.381) [-1244.535] (-1250.471) * (-1249.583) (-1301.844) [-1246.325] (-1286.538) -- 0:04:32
285000 -- (-1308.322) (-1287.087) [-1250.123] (-1264.525) * (-1270.929) (-1294.519) [-1251.678] (-1289.165) -- 0:04:30
Average standard deviation of split frequencies: 0.012225
286000 -- (-1305.439) (-1301.273) [-1245.007] (-1253.510) * [-1250.746] (-1295.390) (-1248.411) (-1280.304) -- 0:04:32
287000 -- (-1303.200) (-1301.062) [-1248.887] (-1253.164) * [-1250.265] (-1294.290) (-1259.531) (-1288.597) -- 0:04:30
288000 -- (-1301.588) (-1297.167) [-1246.526] (-1269.637) * [-1245.574] (-1309.449) (-1259.688) (-1289.035) -- 0:04:31
289000 -- (-1302.757) (-1298.396) [-1246.928] (-1260.349) * [-1254.040] (-1291.698) (-1250.088) (-1298.381) -- 0:04:30
290000 -- (-1289.199) (-1288.436) [-1245.164] (-1254.033) * [-1249.407] (-1288.438) (-1254.350) (-1281.629) -- 0:04:29
Average standard deviation of split frequencies: 0.012067
291000 -- (-1300.836) (-1299.360) (-1248.992) [-1252.799] * [-1255.114] (-1303.635) (-1265.230) (-1284.662) -- 0:04:30
292000 -- (-1309.218) (-1294.212) (-1249.598) [-1260.612] * [-1248.401] (-1297.504) (-1267.902) (-1301.650) -- 0:04:29
293000 -- (-1308.084) (-1285.778) [-1245.414] (-1251.806) * [-1246.594] (-1292.604) (-1257.778) (-1299.244) -- 0:04:27
294000 -- (-1297.897) (-1294.725) (-1250.600) [-1249.651] * (-1247.498) (-1301.195) [-1250.310] (-1293.932) -- 0:04:28
295000 -- (-1296.840) (-1283.892) (-1252.064) [-1248.094] * [-1240.666] (-1296.965) (-1264.622) (-1289.745) -- 0:04:27
Average standard deviation of split frequencies: 0.011986
296000 -- (-1310.084) (-1287.549) (-1253.210) [-1244.832] * [-1248.917] (-1298.399) (-1255.413) (-1285.960) -- 0:04:28
297000 -- (-1303.131) (-1298.383) [-1246.678] (-1253.057) * [-1244.872] (-1300.180) (-1260.071) (-1284.773) -- 0:04:27
298000 -- (-1312.000) (-1288.919) [-1240.887] (-1247.879) * [-1247.914] (-1288.740) (-1252.974) (-1287.084) -- 0:04:26
299000 -- (-1300.739) (-1296.623) [-1253.550] (-1253.532) * [-1249.677] (-1298.372) (-1245.375) (-1288.642) -- 0:04:27
300000 -- (-1287.768) (-1299.811) (-1261.298) [-1246.254] * (-1251.802) (-1295.294) [-1251.300] (-1289.946) -- 0:04:26
Average standard deviation of split frequencies: 0.011207
301000 -- (-1305.174) (-1295.666) [-1257.026] (-1254.518) * (-1266.989) (-1288.677) [-1245.045] (-1292.349) -- 0:04:27
302000 -- (-1301.931) (-1298.461) (-1264.290) [-1245.849] * [-1251.986] (-1288.279) (-1245.903) (-1281.802) -- 0:04:25
303000 -- (-1298.980) (-1303.373) (-1251.221) [-1250.152] * [-1247.669] (-1287.891) (-1250.582) (-1289.117) -- 0:04:24
304000 -- (-1297.520) (-1297.963) [-1250.102] (-1251.603) * [-1251.470] (-1309.626) (-1249.992) (-1283.664) -- 0:04:25
305000 -- (-1303.274) (-1297.615) [-1252.410] (-1259.811) * [-1251.651] (-1293.138) (-1249.504) (-1283.192) -- 0:04:24
Average standard deviation of split frequencies: 0.011156
306000 -- (-1306.721) (-1303.397) [-1253.225] (-1257.616) * (-1256.971) (-1302.834) [-1250.837] (-1274.983) -- 0:04:23
307000 -- (-1295.547) (-1296.204) [-1247.680] (-1255.772) * [-1249.319] (-1293.727) (-1264.702) (-1287.531) -- 0:04:24
308000 -- (-1313.769) (-1297.049) (-1262.424) [-1254.375] * (-1258.136) (-1295.825) [-1246.690] (-1287.013) -- 0:04:22
309000 -- (-1303.498) (-1294.788) [-1246.291] (-1256.770) * (-1265.594) (-1295.436) [-1251.006] (-1284.731) -- 0:04:23
310000 -- (-1303.437) (-1311.919) [-1243.146] (-1250.184) * [-1264.597] (-1300.880) (-1254.155) (-1286.675) -- 0:04:22
Average standard deviation of split frequencies: 0.011676
311000 -- (-1298.725) (-1289.126) [-1255.588] (-1248.558) * [-1256.075] (-1289.817) (-1250.205) (-1288.628) -- 0:04:21
312000 -- (-1309.265) (-1300.433) (-1261.420) [-1250.797] * (-1262.122) (-1293.354) [-1252.509] (-1290.122) -- 0:04:22
313000 -- (-1305.573) (-1296.256) [-1250.849] (-1246.833) * [-1255.923] (-1297.471) (-1250.339) (-1287.011) -- 0:04:21
314000 -- (-1310.982) (-1293.379) (-1253.089) [-1248.021] * (-1250.804) (-1297.589) [-1249.324] (-1283.237) -- 0:04:22
315000 -- (-1296.501) (-1297.837) (-1243.139) [-1253.594] * (-1249.021) (-1304.618) [-1247.744] (-1286.206) -- 0:04:20
Average standard deviation of split frequencies: 0.011530
316000 -- (-1298.434) (-1298.953) (-1250.259) [-1257.898] * (-1248.359) (-1292.067) [-1248.085] (-1284.993) -- 0:04:19
317000 -- (-1310.377) (-1295.368) [-1250.888] (-1256.705) * (-1253.649) (-1295.009) [-1256.853] (-1281.549) -- 0:04:20
318000 -- (-1302.964) (-1289.836) (-1250.184) [-1248.016] * [-1252.257] (-1289.735) (-1257.074) (-1283.816) -- 0:04:19
319000 -- (-1295.636) (-1288.994) (-1255.025) [-1251.714] * [-1244.858] (-1305.793) (-1260.031) (-1286.046) -- 0:04:18
320000 -- (-1308.279) (-1304.408) [-1249.529] (-1250.165) * [-1252.967] (-1308.933) (-1261.304) (-1279.681) -- 0:04:19
Average standard deviation of split frequencies: 0.011788
321000 -- (-1308.182) (-1294.210) (-1256.816) [-1246.506] * [-1243.412] (-1301.400) (-1253.600) (-1284.009) -- 0:04:18
322000 -- (-1292.113) (-1294.733) [-1252.415] (-1253.038) * [-1245.563] (-1307.659) (-1259.724) (-1291.760) -- 0:04:18
323000 -- (-1301.641) (-1296.646) (-1259.419) [-1248.183] * (-1249.377) (-1293.443) [-1249.990] (-1277.011) -- 0:04:17
324000 -- (-1292.071) (-1288.413) (-1255.097) [-1250.842] * [-1251.387] (-1287.727) (-1250.836) (-1283.263) -- 0:04:16
325000 -- (-1300.828) (-1302.317) (-1248.676) [-1245.603] * [-1246.385] (-1285.655) (-1252.404) (-1285.761) -- 0:04:17
Average standard deviation of split frequencies: 0.011201
326000 -- (-1296.438) (-1297.963) (-1249.661) [-1248.764] * [-1251.498] (-1287.575) (-1249.616) (-1281.255) -- 0:04:16
327000 -- (-1301.026) (-1294.858) [-1253.376] (-1247.998) * (-1246.177) (-1293.651) [-1251.349] (-1284.882) -- 0:04:17
328000 -- (-1297.820) (-1296.646) [-1262.123] (-1255.230) * [-1257.651] (-1291.012) (-1252.450) (-1293.885) -- 0:04:16
329000 -- (-1302.294) (-1297.029) [-1249.870] (-1251.128) * (-1256.129) (-1299.844) [-1248.257] (-1285.646) -- 0:04:14
330000 -- (-1295.354) (-1291.216) [-1250.983] (-1255.403) * (-1257.601) (-1303.087) [-1242.350] (-1280.823) -- 0:04:15
Average standard deviation of split frequencies: 0.012080
331000 -- (-1296.687) (-1313.682) (-1247.273) [-1258.035] * (-1257.823) (-1301.463) [-1249.253] (-1297.222) -- 0:04:14
332000 -- (-1307.553) (-1293.975) [-1253.484] (-1250.927) * (-1260.164) (-1291.377) [-1249.445] (-1282.590) -- 0:04:13
333000 -- (-1300.534) (-1313.000) [-1255.732] (-1250.370) * [-1245.117] (-1297.157) (-1257.593) (-1281.597) -- 0:04:14
334000 -- (-1290.294) (-1294.162) (-1250.869) [-1247.682] * (-1263.632) (-1286.787) [-1246.211] (-1288.999) -- 0:04:13
335000 -- (-1300.439) (-1289.198) (-1247.616) [-1244.764] * [-1253.380] (-1301.014) (-1252.851) (-1283.010) -- 0:04:14
Average standard deviation of split frequencies: 0.012653
336000 -- (-1305.140) (-1305.115) (-1255.495) [-1250.479] * [-1245.604] (-1295.195) (-1256.007) (-1287.448) -- 0:04:12
337000 -- (-1303.276) (-1298.583) (-1249.318) [-1246.686] * (-1254.197) (-1296.306) [-1253.661] (-1290.305) -- 0:04:11
338000 -- (-1300.847) (-1291.873) (-1257.041) [-1249.940] * [-1260.423] (-1311.556) (-1247.845) (-1291.200) -- 0:04:12
339000 -- (-1308.789) (-1299.879) (-1257.412) [-1254.970] * (-1266.392) (-1291.556) [-1251.182] (-1287.371) -- 0:04:11
340000 -- (-1297.161) (-1294.200) [-1257.259] (-1247.136) * (-1258.205) (-1295.338) [-1248.269] (-1289.132) -- 0:04:10
Average standard deviation of split frequencies: 0.011656
341000 -- (-1300.421) (-1304.449) [-1249.936] (-1245.255) * [-1242.586] (-1294.730) (-1252.055) (-1285.472) -- 0:04:11
342000 -- (-1304.524) (-1299.924) (-1260.228) [-1248.417] * [-1245.900] (-1309.739) (-1254.339) (-1275.674) -- 0:04:10
343000 -- (-1293.606) (-1284.862) (-1261.700) [-1249.285] * [-1252.145] (-1291.055) (-1255.279) (-1285.766) -- 0:04:10
344000 -- (-1299.879) (-1293.782) (-1255.952) [-1252.135] * (-1254.988) (-1307.601) [-1248.509] (-1282.117) -- 0:04:09
345000 -- (-1310.296) (-1299.552) [-1260.568] (-1256.324) * (-1245.372) (-1300.799) [-1256.109] (-1281.424) -- 0:04:08
Average standard deviation of split frequencies: 0.011727
346000 -- (-1301.582) (-1301.992) (-1259.953) [-1251.991] * (-1254.832) (-1302.516) [-1247.840] (-1284.621) -- 0:04:09
347000 -- (-1298.985) (-1291.655) (-1262.150) [-1253.594] * (-1260.010) (-1304.534) [-1245.566] (-1293.002) -- 0:04:08
348000 -- (-1306.085) (-1292.840) [-1244.838] (-1257.948) * [-1250.883] (-1295.678) (-1250.092) (-1280.453) -- 0:04:07
349000 -- (-1305.854) (-1294.493) (-1251.506) [-1251.758] * [-1251.986] (-1294.479) (-1249.620) (-1285.997) -- 0:04:08
350000 -- (-1306.230) (-1302.070) (-1249.133) [-1249.173] * [-1241.314] (-1296.635) (-1260.817) (-1292.394) -- 0:04:07
Average standard deviation of split frequencies: 0.011725
351000 -- (-1296.573) (-1286.665) (-1253.736) [-1250.243] * [-1245.493] (-1294.213) (-1270.088) (-1270.968) -- 0:04:07
352000 -- (-1298.885) (-1293.488) (-1250.666) [-1249.816] * [-1246.196] (-1293.917) (-1254.815) (-1287.508) -- 0:04:06
353000 -- (-1299.447) (-1296.367) [-1254.401] (-1247.016) * (-1245.917) (-1291.488) [-1249.115] (-1293.041) -- 0:04:05
354000 -- (-1297.687) (-1286.447) (-1250.316) [-1246.734] * (-1249.656) (-1292.599) [-1252.580] (-1280.330) -- 0:04:06
355000 -- (-1305.817) (-1297.488) [-1244.903] (-1255.200) * [-1248.872] (-1297.533) (-1250.372) (-1292.706) -- 0:04:05
Average standard deviation of split frequencies: 0.012367
356000 -- (-1290.627) (-1301.394) [-1247.705] (-1261.811) * (-1247.389) (-1294.890) [-1242.255] (-1288.776) -- 0:04:04
357000 -- (-1301.848) (-1300.458) [-1245.694] (-1259.992) * (-1251.773) (-1289.961) [-1248.335] (-1292.741) -- 0:04:04
358000 -- (-1305.652) (-1290.230) [-1248.008] (-1257.569) * (-1255.016) (-1298.722) [-1262.681] (-1288.172) -- 0:04:03
359000 -- (-1294.385) (-1306.094) (-1249.766) [-1244.751] * (-1255.410) (-1291.790) [-1264.691] (-1299.944) -- 0:04:04
360000 -- (-1297.118) (-1289.000) [-1250.113] (-1256.555) * (-1253.022) (-1301.492) [-1260.105] (-1281.862) -- 0:04:03
Average standard deviation of split frequencies: 0.012999
361000 -- (-1304.788) (-1303.177) [-1251.706] (-1251.299) * [-1248.045] (-1295.688) (-1249.776) (-1286.585) -- 0:04:02
362000 -- (-1304.915) (-1291.274) (-1247.169) [-1249.559] * [-1261.394] (-1300.621) (-1249.018) (-1302.691) -- 0:04:03
363000 -- (-1303.339) (-1290.975) [-1248.173] (-1246.572) * (-1249.715) (-1297.598) [-1248.659] (-1296.857) -- 0:04:02
364000 -- (-1299.385) (-1300.043) [-1246.777] (-1260.198) * [-1242.972] (-1306.950) (-1246.842) (-1275.362) -- 0:04:02
365000 -- (-1308.625) (-1300.555) [-1255.433] (-1271.917) * (-1255.894) (-1304.917) [-1250.447] (-1287.373) -- 0:04:01
Average standard deviation of split frequencies: 0.012518
366000 -- (-1308.715) (-1295.654) [-1247.740] (-1246.593) * (-1250.494) (-1308.863) [-1252.390] (-1286.824) -- 0:04:00
367000 -- (-1294.903) (-1294.697) [-1247.463] (-1251.142) * [-1244.201] (-1286.480) (-1257.005) (-1293.821) -- 0:04:01
368000 -- (-1296.983) (-1300.613) [-1243.736] (-1249.292) * [-1243.781] (-1286.127) (-1258.059) (-1284.123) -- 0:04:00
369000 -- (-1302.452) (-1297.755) [-1257.500] (-1248.777) * (-1257.401) (-1291.232) [-1264.685] (-1286.585) -- 0:03:59
370000 -- (-1315.953) (-1298.115) [-1257.191] (-1246.431) * (-1251.374) (-1293.376) [-1254.122] (-1282.677) -- 0:04:00
Average standard deviation of split frequencies: 0.012826
371000 -- (-1316.298) (-1295.776) [-1260.471] (-1254.811) * [-1247.706] (-1299.192) (-1250.461) (-1290.914) -- 0:03:59
372000 -- (-1295.430) (-1296.572) (-1246.792) [-1254.615] * (-1250.876) (-1289.824) [-1250.183] (-1288.863) -- 0:03:59
373000 -- (-1314.437) (-1301.108) [-1251.897] (-1252.661) * (-1249.197) (-1291.675) [-1253.208] (-1293.481) -- 0:03:58
374000 -- (-1306.051) (-1291.963) [-1253.355] (-1251.253) * (-1252.786) (-1290.995) [-1252.248] (-1289.724) -- 0:03:57
375000 -- (-1297.456) (-1291.726) (-1248.289) [-1246.186] * [-1243.053] (-1303.256) (-1254.457) (-1293.897) -- 0:03:58
Average standard deviation of split frequencies: 0.012516
376000 -- (-1297.652) (-1301.395) [-1252.244] (-1248.991) * [-1248.837] (-1303.799) (-1251.569) (-1285.279) -- 0:03:57
377000 -- (-1303.153) (-1302.001) [-1259.065] (-1242.867) * [-1245.440] (-1306.316) (-1257.993) (-1277.319) -- 0:03:56
378000 -- (-1305.492) (-1304.885) [-1249.522] (-1248.089) * [-1254.665] (-1296.270) (-1250.538) (-1294.353) -- 0:03:56
379000 -- (-1301.425) (-1300.214) [-1252.281] (-1246.500) * [-1246.533] (-1298.435) (-1253.508) (-1278.581) -- 0:03:55
380000 -- (-1298.846) (-1302.647) (-1256.655) [-1252.478] * [-1249.071] (-1301.780) (-1255.436) (-1296.381) -- 0:03:56
Average standard deviation of split frequencies: 0.012384
381000 -- (-1291.902) (-1304.917) (-1247.875) [-1246.153] * [-1262.016] (-1292.098) (-1249.788) (-1290.277) -- 0:03:55
382000 -- (-1304.758) (-1291.862) (-1254.698) [-1245.037] * (-1275.725) (-1303.343) [-1246.192] (-1283.527) -- 0:03:54
383000 -- (-1304.419) (-1297.116) (-1253.735) [-1249.972] * (-1250.637) (-1293.460) [-1251.502] (-1285.217) -- 0:03:55
384000 -- (-1305.920) (-1302.600) [-1255.094] (-1256.160) * (-1250.850) (-1288.276) [-1255.951] (-1283.276) -- 0:03:54
385000 -- (-1299.222) (-1298.382) (-1251.654) [-1247.934] * (-1266.220) (-1288.352) [-1244.312] (-1277.447) -- 0:03:53
Average standard deviation of split frequencies: 0.011613
386000 -- (-1301.863) (-1295.391) (-1246.703) [-1251.966] * [-1250.313] (-1293.246) (-1257.572) (-1278.722) -- 0:03:53
387000 -- (-1292.954) (-1298.518) [-1252.312] (-1251.320) * (-1265.158) (-1301.063) [-1250.206] (-1286.494) -- 0:03:52
388000 -- (-1292.834) (-1296.051) (-1257.090) [-1242.441] * (-1253.970) (-1302.382) [-1250.835] (-1289.696) -- 0:03:53
389000 -- (-1299.208) (-1287.183) (-1254.542) [-1249.260] * (-1254.248) (-1299.575) [-1244.993] (-1290.861) -- 0:03:52
390000 -- (-1301.180) (-1287.465) [-1258.113] (-1245.993) * [-1245.291] (-1304.185) (-1250.893) (-1283.913) -- 0:03:51
Average standard deviation of split frequencies: 0.011173
391000 -- (-1303.093) (-1298.344) [-1247.727] (-1246.877) * (-1268.514) (-1292.522) [-1251.842] (-1285.236) -- 0:03:52
392000 -- (-1303.932) (-1290.648) [-1256.215] (-1244.559) * (-1255.057) (-1301.365) [-1247.231] (-1277.855) -- 0:03:51
393000 -- (-1295.482) (-1304.661) (-1251.844) [-1247.111] * [-1246.391] (-1298.833) (-1248.143) (-1288.380) -- 0:03:50
394000 -- (-1313.864) (-1299.146) [-1257.790] (-1250.593) * (-1254.663) (-1298.064) [-1260.260] (-1290.632) -- 0:03:50
395000 -- (-1305.741) (-1285.043) (-1248.507) [-1250.348] * (-1253.216) (-1292.434) [-1248.391] (-1278.813) -- 0:03:49
Average standard deviation of split frequencies: 0.011353
396000 -- (-1299.293) (-1284.697) (-1248.663) [-1246.477] * [-1250.034] (-1292.649) (-1264.621) (-1289.245) -- 0:03:50
397000 -- (-1303.979) (-1284.999) (-1254.827) [-1248.925] * [-1246.444] (-1304.374) (-1257.815) (-1287.136) -- 0:03:49
398000 -- (-1303.065) (-1297.243) [-1257.164] (-1248.741) * (-1247.531) (-1301.365) [-1244.967] (-1286.181) -- 0:03:48
399000 -- (-1314.165) (-1300.233) [-1261.481] (-1250.846) * (-1262.813) (-1291.436) [-1253.028] (-1275.210) -- 0:03:48
400000 -- (-1315.169) (-1298.881) (-1246.724) [-1245.946] * (-1256.057) (-1291.406) [-1241.811] (-1288.956) -- 0:03:48
Average standard deviation of split frequencies: 0.011573
401000 -- (-1318.356) (-1298.812) [-1247.434] (-1248.052) * (-1254.433) (-1295.501) [-1249.822] (-1282.462) -- 0:03:47
402000 -- (-1305.474) (-1305.626) [-1251.454] (-1250.882) * [-1257.796] (-1298.400) (-1248.959) (-1287.676) -- 0:03:47
403000 -- (-1300.866) (-1289.233) [-1255.217] (-1249.403) * [-1252.888] (-1294.842) (-1250.756) (-1285.211) -- 0:03:46
404000 -- (-1296.532) (-1292.733) [-1258.383] (-1249.616) * (-1262.474) (-1295.408) [-1250.557] (-1283.249) -- 0:03:47
405000 -- (-1298.519) (-1295.123) [-1248.249] (-1258.218) * [-1247.190] (-1298.229) (-1252.251) (-1287.978) -- 0:03:46
Average standard deviation of split frequencies: 0.011611
406000 -- (-1295.615) (-1294.733) (-1254.410) [-1263.651] * (-1249.133) (-1299.437) [-1243.952] (-1273.656) -- 0:03:45
407000 -- (-1291.528) (-1287.012) [-1248.423] (-1258.353) * [-1242.189] (-1292.838) (-1250.232) (-1281.444) -- 0:03:45
408000 -- (-1293.656) (-1302.349) (-1254.429) [-1255.614] * [-1249.929] (-1292.999) (-1260.670) (-1284.386) -- 0:03:44
409000 -- (-1297.914) (-1296.880) [-1252.301] (-1255.902) * [-1251.704] (-1299.592) (-1251.149) (-1275.037) -- 0:03:45
410000 -- (-1303.429) (-1303.208) [-1247.452] (-1258.555) * (-1260.034) (-1284.491) [-1256.050] (-1284.488) -- 0:03:44
Average standard deviation of split frequencies: 0.011400
411000 -- (-1302.041) (-1297.474) [-1252.558] (-1257.010) * (-1258.826) (-1305.826) [-1250.143] (-1277.938) -- 0:03:43
412000 -- (-1292.842) (-1303.309) [-1253.426] (-1253.134) * (-1259.179) (-1296.212) [-1244.062] (-1282.202) -- 0:03:44
413000 -- (-1301.518) (-1293.653) (-1238.355) [-1248.716] * [-1250.545] (-1295.593) (-1252.907) (-1294.625) -- 0:03:43
414000 -- (-1303.827) (-1291.920) [-1254.596] (-1254.803) * [-1250.465] (-1313.744) (-1268.922) (-1286.075) -- 0:03:42
415000 -- (-1299.973) (-1295.653) (-1261.925) [-1250.499] * (-1252.226) (-1295.299) [-1253.285] (-1280.390) -- 0:03:42
Average standard deviation of split frequencies: 0.010866
416000 -- (-1313.842) (-1298.745) [-1248.068] (-1244.523) * (-1247.895) (-1295.578) [-1243.497] (-1286.368) -- 0:03:41
417000 -- (-1297.149) (-1297.820) (-1256.254) [-1247.495] * [-1257.165] (-1298.701) (-1247.617) (-1280.671) -- 0:03:42
418000 -- (-1317.369) (-1291.779) [-1251.195] (-1253.834) * [-1254.603] (-1291.314) (-1262.897) (-1287.844) -- 0:03:41
419000 -- (-1292.897) (-1299.268) [-1258.586] (-1256.022) * (-1242.890) (-1296.577) [-1249.156] (-1282.918) -- 0:03:40
420000 -- (-1293.258) (-1288.787) [-1256.267] (-1250.348) * (-1244.256) (-1290.715) [-1257.573] (-1288.029) -- 0:03:40
Average standard deviation of split frequencies: 0.010880
421000 -- (-1305.388) (-1293.888) [-1252.974] (-1253.589) * [-1246.620] (-1298.270) (-1250.281) (-1291.495) -- 0:03:40
422000 -- (-1287.655) (-1293.021) [-1245.489] (-1253.665) * [-1251.314] (-1303.250) (-1248.558) (-1290.057) -- 0:03:39
423000 -- (-1293.182) (-1295.532) [-1253.384] (-1254.491) * [-1242.646] (-1295.783) (-1257.464) (-1279.536) -- 0:03:39
424000 -- (-1297.770) (-1303.508) (-1263.116) [-1244.231] * [-1252.114] (-1301.326) (-1248.001) (-1280.467) -- 0:03:38
425000 -- (-1301.907) (-1287.534) [-1251.867] (-1249.426) * [-1255.572] (-1306.126) (-1251.080) (-1288.211) -- 0:03:39
Average standard deviation of split frequencies: 0.010724
426000 -- (-1293.094) (-1287.396) (-1249.593) [-1252.703] * (-1251.749) (-1298.729) [-1249.191] (-1299.667) -- 0:03:38
427000 -- (-1290.240) (-1289.755) (-1263.677) [-1254.818] * [-1247.113] (-1299.579) (-1251.057) (-1282.076) -- 0:03:37
428000 -- (-1295.865) (-1292.097) [-1250.315] (-1253.999) * [-1249.540] (-1300.983) (-1248.810) (-1285.656) -- 0:03:37
429000 -- (-1287.038) (-1305.584) (-1256.715) [-1248.599] * (-1256.931) (-1298.976) [-1244.307] (-1283.226) -- 0:03:36
430000 -- (-1300.404) (-1301.318) (-1255.464) [-1247.496] * (-1250.475) (-1285.080) [-1248.043] (-1283.145) -- 0:03:36
Average standard deviation of split frequencies: 0.011244
431000 -- (-1296.479) (-1284.174) [-1249.709] (-1251.941) * [-1244.975] (-1301.639) (-1251.018) (-1286.627) -- 0:03:36
432000 -- (-1296.420) (-1290.866) [-1249.395] (-1259.378) * (-1254.893) (-1285.339) [-1254.451] (-1280.602) -- 0:03:35
433000 -- (-1312.482) (-1303.142) [-1256.038] (-1254.575) * (-1252.384) (-1296.068) [-1251.532] (-1289.634) -- 0:03:36
434000 -- (-1295.970) (-1295.290) [-1254.940] (-1260.958) * (-1251.730) (-1297.516) [-1258.589] (-1286.422) -- 0:03:35
435000 -- (-1286.169) (-1300.385) [-1253.096] (-1246.641) * (-1266.941) (-1292.216) [-1255.235] (-1288.770) -- 0:03:34
Average standard deviation of split frequencies: 0.011748
436000 -- (-1295.033) (-1293.997) (-1243.949) [-1249.085] * (-1257.466) (-1296.939) [-1248.988] (-1291.126) -- 0:03:34
437000 -- (-1306.435) (-1288.431) (-1255.486) [-1249.964] * [-1243.467] (-1302.635) (-1251.042) (-1297.665) -- 0:03:33
438000 -- (-1303.466) (-1300.044) [-1243.376] (-1250.781) * [-1247.007] (-1297.885) (-1250.691) (-1295.803) -- 0:03:34
439000 -- (-1302.683) (-1300.214) (-1251.248) [-1252.963] * (-1254.637) (-1298.230) [-1249.166] (-1279.851) -- 0:03:33
440000 -- (-1299.788) (-1296.860) (-1251.131) [-1243.552] * [-1245.433] (-1296.920) (-1255.939) (-1280.918) -- 0:03:32
Average standard deviation of split frequencies: 0.012158
441000 -- (-1311.829) (-1295.627) [-1256.587] (-1251.637) * (-1254.952) (-1293.308) [-1255.470] (-1291.285) -- 0:03:32
442000 -- (-1296.637) (-1298.078) [-1241.349] (-1254.048) * (-1259.720) (-1297.179) [-1254.640] (-1289.727) -- 0:03:32
443000 -- (-1305.606) (-1308.291) [-1251.051] (-1260.480) * [-1245.243] (-1299.588) (-1250.919) (-1280.348) -- 0:03:31
444000 -- (-1305.296) (-1313.723) [-1246.146] (-1257.496) * [-1256.173] (-1290.048) (-1250.783) (-1292.792) -- 0:03:31
445000 -- (-1295.627) (-1298.523) (-1253.791) [-1253.227] * (-1262.991) (-1298.782) [-1253.445] (-1283.437) -- 0:03:30
Average standard deviation of split frequencies: 0.012069
446000 -- (-1304.944) (-1300.108) [-1263.403] (-1250.262) * (-1252.871) (-1292.416) [-1248.242] (-1281.930) -- 0:03:31
447000 -- (-1299.048) (-1298.617) (-1246.303) [-1252.426] * (-1257.542) (-1288.557) [-1245.603] (-1294.510) -- 0:03:30
448000 -- (-1296.768) (-1291.783) [-1245.474] (-1255.913) * (-1250.772) (-1291.555) [-1241.262] (-1287.756) -- 0:03:29
449000 -- (-1305.399) (-1293.645) [-1252.468] (-1250.542) * [-1245.705] (-1292.643) (-1257.070) (-1279.035) -- 0:03:29
450000 -- (-1298.243) (-1317.229) (-1253.185) [-1250.813] * (-1249.654) (-1289.612) [-1253.119] (-1286.194) -- 0:03:29
Average standard deviation of split frequencies: 0.012328
451000 -- (-1295.804) (-1292.489) [-1249.554] (-1252.911) * [-1245.758] (-1296.915) (-1245.838) (-1285.301) -- 0:03:28
452000 -- (-1294.508) (-1290.876) (-1248.095) [-1253.569] * [-1247.461] (-1292.194) (-1254.339) (-1280.496) -- 0:03:28
453000 -- (-1295.239) (-1300.468) [-1251.467] (-1252.207) * [-1253.784] (-1304.342) (-1257.689) (-1280.483) -- 0:03:27
454000 -- (-1305.801) (-1286.929) [-1252.867] (-1246.111) * (-1257.898) (-1300.904) [-1251.018] (-1287.581) -- 0:03:28
455000 -- (-1305.602) (-1291.902) (-1253.940) [-1253.416] * (-1254.720) (-1288.987) [-1247.642] (-1291.841) -- 0:03:27
Average standard deviation of split frequencies: 0.012293
456000 -- (-1288.128) (-1296.778) [-1251.137] (-1255.507) * (-1254.759) (-1295.559) [-1253.680] (-1285.946) -- 0:03:26
457000 -- (-1294.906) (-1302.766) [-1249.526] (-1248.809) * (-1244.745) (-1299.811) [-1257.600] (-1287.366) -- 0:03:26
458000 -- (-1309.213) (-1300.156) (-1256.757) [-1253.601] * (-1254.747) (-1291.950) [-1250.614] (-1279.303) -- 0:03:25
459000 -- (-1307.732) (-1297.282) [-1253.143] (-1263.769) * [-1254.143] (-1288.370) (-1250.148) (-1287.154) -- 0:03:26
460000 -- (-1290.400) (-1302.046) [-1251.984] (-1250.311) * [-1260.271] (-1289.008) (-1247.357) (-1296.171) -- 0:03:25
Average standard deviation of split frequencies: 0.012039
461000 -- (-1291.953) (-1292.051) (-1252.312) [-1257.956] * [-1249.968] (-1301.150) (-1246.233) (-1295.475) -- 0:03:24
462000 -- (-1299.273) (-1301.677) [-1245.419] (-1249.929) * [-1249.436] (-1291.248) (-1263.985) (-1285.777) -- 0:03:24
463000 -- (-1303.604) (-1293.609) [-1252.180] (-1253.737) * [-1245.916] (-1295.986) (-1248.284) (-1283.254) -- 0:03:24
464000 -- (-1303.717) (-1298.185) (-1245.735) [-1252.450] * (-1249.975) (-1306.699) [-1250.561] (-1282.616) -- 0:03:23
465000 -- (-1306.361) (-1304.847) (-1257.372) [-1245.443] * (-1255.005) (-1305.260) [-1254.670] (-1276.440) -- 0:03:23
Average standard deviation of split frequencies: 0.012233
466000 -- (-1306.403) (-1305.152) (-1253.364) [-1246.724] * [-1249.145] (-1296.394) (-1250.430) (-1287.270) -- 0:03:22
467000 -- (-1303.907) (-1295.915) [-1248.362] (-1247.900) * [-1243.653] (-1318.261) (-1254.781) (-1278.755) -- 0:03:23
468000 -- (-1297.386) (-1295.919) [-1247.020] (-1249.663) * [-1249.672] (-1301.023) (-1263.380) (-1281.609) -- 0:03:22
469000 -- (-1299.068) (-1284.699) [-1245.406] (-1252.114) * [-1254.816] (-1304.467) (-1262.979) (-1278.409) -- 0:03:21
470000 -- (-1301.611) (-1286.612) [-1250.064] (-1259.388) * [-1243.703] (-1302.903) (-1250.182) (-1287.634) -- 0:03:21
Average standard deviation of split frequencies: 0.012489
471000 -- (-1289.595) (-1292.319) (-1252.087) [-1249.333] * [-1246.114] (-1302.791) (-1252.119) (-1299.038) -- 0:03:21
472000 -- (-1308.665) (-1295.470) [-1252.043] (-1247.347) * [-1250.893] (-1289.626) (-1248.608) (-1298.121) -- 0:03:20
473000 -- (-1303.998) (-1290.309) (-1252.198) [-1244.492] * (-1248.391) (-1298.136) [-1243.856] (-1279.452) -- 0:03:20
474000 -- (-1307.273) (-1289.537) (-1247.820) [-1253.665] * (-1257.878) (-1296.062) [-1250.507] (-1287.272) -- 0:03:19
475000 -- (-1308.383) (-1294.576) (-1250.548) [-1260.360] * [-1247.105] (-1298.934) (-1254.140) (-1291.249) -- 0:03:20
Average standard deviation of split frequencies: 0.012637
476000 -- (-1302.944) (-1289.389) [-1251.826] (-1256.128) * (-1251.443) (-1288.964) [-1259.529] (-1294.732) -- 0:03:19
477000 -- (-1298.887) (-1304.954) [-1255.936] (-1256.337) * [-1248.970] (-1288.312) (-1255.812) (-1280.415) -- 0:03:18
478000 -- (-1292.512) (-1291.606) (-1252.951) [-1251.418] * [-1249.042] (-1305.676) (-1252.080) (-1274.867) -- 0:03:18
479000 -- (-1300.428) (-1291.353) [-1255.551] (-1255.990) * [-1244.914] (-1304.702) (-1254.160) (-1286.610) -- 0:03:17
480000 -- (-1290.595) (-1304.890) (-1253.566) [-1249.721] * [-1259.521] (-1300.495) (-1246.799) (-1287.288) -- 0:03:18
Average standard deviation of split frequencies: 0.012226
481000 -- (-1296.310) (-1305.852) [-1248.575] (-1242.265) * [-1242.199] (-1290.833) (-1250.170) (-1278.973) -- 0:03:17
482000 -- (-1309.587) (-1290.332) (-1257.023) [-1252.018] * [-1248.787] (-1300.656) (-1250.467) (-1291.016) -- 0:03:16
483000 -- (-1294.235) (-1300.281) [-1258.209] (-1251.011) * (-1243.604) (-1298.141) [-1248.814] (-1277.555) -- 0:03:16
484000 -- (-1295.472) (-1308.853) [-1252.402] (-1248.617) * [-1248.556] (-1300.015) (-1254.757) (-1291.493) -- 0:03:16
485000 -- (-1309.300) (-1292.111) [-1250.992] (-1256.997) * (-1254.496) (-1294.456) [-1248.459] (-1300.494) -- 0:03:15
Average standard deviation of split frequencies: 0.012392
486000 -- (-1299.020) (-1312.213) [-1252.030] (-1254.581) * (-1261.719) (-1300.366) [-1256.704] (-1290.196) -- 0:03:15
487000 -- (-1299.489) (-1306.193) [-1252.517] (-1254.886) * [-1250.065] (-1307.087) (-1247.388) (-1284.050) -- 0:03:14
488000 -- (-1293.540) (-1309.574) [-1247.966] (-1251.950) * (-1249.860) (-1302.705) [-1250.678] (-1286.195) -- 0:03:15
489000 -- (-1299.409) (-1295.347) (-1246.894) [-1251.041] * (-1248.884) (-1302.810) [-1245.634] (-1302.002) -- 0:03:14
490000 -- (-1297.275) (-1307.173) (-1246.732) [-1251.460] * [-1251.132] (-1299.257) (-1251.797) (-1279.214) -- 0:03:13
Average standard deviation of split frequencies: 0.012285
491000 -- (-1288.471) (-1298.380) (-1255.813) [-1250.594] * [-1251.779] (-1301.049) (-1251.167) (-1282.172) -- 0:03:13
492000 -- (-1295.804) (-1304.332) [-1248.497] (-1257.803) * [-1244.720] (-1291.976) (-1256.196) (-1289.874) -- 0:03:13
493000 -- (-1297.824) (-1288.278) (-1251.723) [-1251.114] * [-1249.665] (-1297.044) (-1244.728) (-1297.816) -- 0:03:12
494000 -- (-1303.296) (-1291.838) (-1255.211) [-1250.122] * (-1249.467) (-1298.258) [-1244.047] (-1292.080) -- 0:03:12
495000 -- (-1292.542) (-1295.169) (-1257.156) [-1247.996] * [-1254.818] (-1293.037) (-1256.696) (-1282.586) -- 0:03:11
Average standard deviation of split frequencies: 0.012355
496000 -- (-1296.295) (-1301.799) [-1251.708] (-1256.189) * [-1254.766] (-1303.303) (-1243.613) (-1287.860) -- 0:03:12
497000 -- (-1304.479) (-1295.582) (-1243.603) [-1252.780] * (-1246.162) (-1300.719) [-1259.900] (-1282.482) -- 0:03:11
498000 -- (-1307.511) (-1302.335) [-1245.255] (-1258.607) * [-1251.024] (-1307.833) (-1249.633) (-1286.536) -- 0:03:10
499000 -- (-1294.438) (-1308.891) (-1254.761) [-1263.758] * [-1257.742] (-1306.676) (-1250.669) (-1284.741) -- 0:03:10
500000 -- (-1289.599) (-1299.063) [-1248.340] (-1249.709) * (-1249.850) (-1294.545) [-1251.008] (-1289.835) -- 0:03:10
Average standard deviation of split frequencies: 0.012775
501000 -- (-1303.408) (-1293.997) (-1247.446) [-1251.282] * [-1251.945] (-1292.867) (-1252.466) (-1284.498) -- 0:03:09
502000 -- (-1302.555) (-1289.104) (-1258.286) [-1248.415] * (-1255.038) (-1294.651) [-1246.526] (-1298.759) -- 0:03:09
503000 -- (-1297.135) (-1301.650) (-1252.097) [-1248.555] * [-1253.350] (-1291.081) (-1268.195) (-1290.261) -- 0:03:08
504000 -- (-1291.513) (-1297.544) [-1251.740] (-1251.861) * (-1247.095) (-1301.839) [-1249.650] (-1282.146) -- 0:03:08
505000 -- (-1295.333) (-1303.155) (-1256.869) [-1259.800] * (-1257.001) (-1299.396) [-1242.225] (-1272.826) -- 0:03:08
Average standard deviation of split frequencies: 0.012320
506000 -- (-1307.247) (-1296.523) (-1253.070) [-1257.029] * (-1251.696) (-1298.992) [-1241.480] (-1281.437) -- 0:03:07
507000 -- (-1300.010) (-1283.712) [-1251.411] (-1252.132) * (-1250.260) (-1297.408) [-1243.926] (-1275.046) -- 0:03:07
508000 -- (-1299.477) (-1287.231) (-1255.878) [-1250.092] * [-1254.892] (-1298.833) (-1250.242) (-1282.899) -- 0:03:06
509000 -- (-1290.797) (-1300.935) [-1244.386] (-1249.816) * (-1262.134) (-1298.268) [-1249.158] (-1279.186) -- 0:03:07
510000 -- (-1294.429) (-1298.813) [-1249.378] (-1250.389) * (-1256.605) (-1303.125) [-1248.553] (-1272.220) -- 0:03:06
Average standard deviation of split frequencies: 0.012275
511000 -- (-1289.041) (-1303.024) [-1245.183] (-1256.323) * (-1262.453) (-1296.368) [-1246.915] (-1285.890) -- 0:03:05
512000 -- (-1294.756) (-1291.546) (-1251.697) [-1251.630] * [-1255.627] (-1302.431) (-1248.489) (-1287.184) -- 0:03:05
513000 -- (-1295.557) (-1303.885) (-1257.937) [-1251.073] * [-1262.881] (-1297.016) (-1241.870) (-1279.795) -- 0:03:05
514000 -- (-1301.439) (-1304.517) (-1246.963) [-1249.646] * [-1254.116] (-1306.544) (-1255.606) (-1290.607) -- 0:03:04
515000 -- (-1301.983) (-1296.657) [-1248.205] (-1244.419) * (-1249.713) (-1294.826) [-1247.192] (-1276.054) -- 0:03:04
Average standard deviation of split frequencies: 0.011610
516000 -- (-1311.729) (-1305.639) [-1244.391] (-1254.353) * [-1248.460] (-1301.988) (-1249.838) (-1287.490) -- 0:03:03
517000 -- (-1300.229) (-1302.229) [-1252.662] (-1252.528) * (-1245.564) (-1300.295) [-1244.615] (-1275.721) -- 0:03:04
518000 -- (-1300.636) (-1307.447) (-1248.382) [-1246.538] * (-1255.125) (-1293.217) [-1247.958] (-1283.421) -- 0:03:03
519000 -- (-1303.203) (-1299.937) (-1245.069) [-1248.693] * (-1255.949) (-1301.321) [-1246.460] (-1284.375) -- 0:03:02
520000 -- (-1300.485) (-1311.778) [-1246.330] (-1249.757) * (-1243.025) (-1289.290) [-1249.104] (-1286.782) -- 0:03:02
Average standard deviation of split frequencies: 0.011750
521000 -- (-1289.817) (-1300.946) (-1245.291) [-1254.776] * (-1259.348) (-1300.005) [-1250.580] (-1289.607) -- 0:03:02
522000 -- (-1294.461) (-1300.045) [-1247.524] (-1262.776) * (-1254.958) (-1300.685) [-1255.360] (-1278.811) -- 0:03:02
523000 -- (-1307.151) (-1300.959) (-1257.000) [-1254.408] * (-1244.307) (-1304.671) [-1247.078] (-1283.044) -- 0:03:01
524000 -- (-1295.692) (-1306.991) (-1250.297) [-1254.752] * [-1248.674] (-1298.444) (-1261.786) (-1285.379) -- 0:03:00
525000 -- (-1296.064) (-1314.672) (-1264.989) [-1252.137] * [-1252.685] (-1295.753) (-1262.874) (-1283.592) -- 0:03:00
Average standard deviation of split frequencies: 0.011689
526000 -- (-1302.872) (-1302.550) (-1246.934) [-1255.972] * [-1256.412] (-1287.662) (-1263.887) (-1286.130) -- 0:03:00
527000 -- (-1292.715) (-1304.459) [-1242.633] (-1263.559) * [-1254.343] (-1301.625) (-1261.472) (-1280.570) -- 0:02:59
528000 -- (-1285.990) (-1297.478) [-1248.111] (-1254.668) * [-1247.854] (-1293.198) (-1251.063) (-1285.609) -- 0:02:59
529000 -- (-1295.815) (-1287.864) (-1249.254) [-1252.779] * [-1248.369] (-1297.598) (-1252.798) (-1287.764) -- 0:02:58
530000 -- (-1302.734) (-1295.085) (-1258.844) [-1249.901] * (-1251.784) (-1294.603) [-1255.146] (-1287.233) -- 0:02:59
Average standard deviation of split frequencies: 0.010892
531000 -- (-1292.052) (-1289.894) [-1254.373] (-1251.157) * [-1247.194] (-1311.083) (-1255.829) (-1281.456) -- 0:02:58
532000 -- (-1293.864) (-1295.142) [-1249.862] (-1247.764) * [-1248.971] (-1299.061) (-1255.384) (-1282.369) -- 0:02:57
533000 -- (-1305.578) (-1292.539) [-1257.185] (-1249.223) * [-1254.235] (-1296.476) (-1264.252) (-1296.584) -- 0:02:57
534000 -- (-1309.878) (-1287.468) (-1270.481) [-1242.120] * [-1247.410] (-1291.502) (-1255.117) (-1281.322) -- 0:02:57
535000 -- (-1309.420) (-1295.569) [-1249.957] (-1253.014) * (-1253.572) (-1305.727) [-1252.586] (-1278.106) -- 0:02:56
Average standard deviation of split frequencies: 0.011570
536000 -- (-1301.875) (-1294.773) (-1252.928) [-1243.303] * [-1256.244] (-1285.477) (-1249.598) (-1279.681) -- 0:02:56
537000 -- (-1292.475) (-1298.833) (-1256.198) [-1248.077] * [-1246.108] (-1297.758) (-1255.098) (-1278.730) -- 0:02:55
538000 -- (-1300.181) (-1295.213) [-1249.874] (-1249.424) * (-1255.502) (-1294.472) [-1252.220] (-1285.290) -- 0:02:56
539000 -- (-1306.085) (-1294.857) [-1247.431] (-1252.052) * [-1250.325] (-1292.956) (-1258.451) (-1289.173) -- 0:02:55
540000 -- (-1299.037) (-1304.590) (-1252.313) [-1245.188] * (-1252.622) (-1295.398) [-1241.377] (-1285.384) -- 0:02:54
Average standard deviation of split frequencies: 0.011467
541000 -- (-1289.363) (-1301.979) (-1249.728) [-1249.112] * (-1249.633) (-1305.026) [-1242.262] (-1281.333) -- 0:02:54
542000 -- (-1307.306) (-1301.749) [-1249.511] (-1255.140) * [-1252.519] (-1296.308) (-1252.819) (-1283.622) -- 0:02:54
543000 -- (-1292.248) (-1295.226) (-1252.272) [-1251.629] * [-1250.035] (-1292.329) (-1257.302) (-1295.855) -- 0:02:54
544000 -- (-1298.851) (-1290.416) [-1254.130] (-1263.473) * (-1257.408) (-1304.231) [-1247.908] (-1294.517) -- 0:02:53
545000 -- (-1299.105) (-1306.691) (-1260.076) [-1257.982] * (-1247.168) (-1296.988) [-1253.264] (-1286.117) -- 0:02:52
Average standard deviation of split frequencies: 0.010567
546000 -- (-1300.121) (-1287.501) [-1258.809] (-1249.561) * [-1252.880] (-1301.343) (-1253.267) (-1271.243) -- 0:02:52
547000 -- (-1294.993) (-1284.427) (-1249.055) [-1248.548] * (-1254.166) (-1291.403) [-1260.512] (-1284.680) -- 0:02:52
548000 -- (-1292.285) (-1287.649) (-1247.520) [-1248.323] * (-1249.790) (-1284.886) [-1251.350] (-1290.507) -- 0:02:51
549000 -- (-1294.707) (-1300.495) (-1247.274) [-1246.156] * [-1248.618] (-1285.390) (-1245.078) (-1290.218) -- 0:02:51
550000 -- (-1293.860) (-1302.321) (-1255.090) [-1251.383] * [-1253.653] (-1291.938) (-1250.595) (-1293.324) -- 0:02:51
Average standard deviation of split frequencies: 0.010930
551000 -- (-1291.037) (-1297.790) (-1245.541) [-1251.827] * (-1245.587) (-1297.147) [-1246.330] (-1284.468) -- 0:02:51
552000 -- (-1295.123) (-1286.167) (-1252.994) [-1257.530] * [-1242.153] (-1289.042) (-1249.472) (-1285.802) -- 0:02:50
553000 -- (-1293.256) (-1302.237) [-1248.362] (-1255.278) * [-1244.067] (-1292.658) (-1252.104) (-1296.183) -- 0:02:49
554000 -- (-1295.719) (-1292.397) (-1259.777) [-1255.806] * [-1249.519] (-1304.462) (-1262.029) (-1289.416) -- 0:02:49
555000 -- (-1294.981) (-1293.346) [-1263.375] (-1253.819) * [-1248.511] (-1292.180) (-1252.634) (-1298.290) -- 0:02:49
Average standard deviation of split frequencies: 0.010549
556000 -- (-1300.471) (-1294.473) [-1247.554] (-1253.902) * (-1253.739) (-1292.418) [-1245.918] (-1291.653) -- 0:02:48
557000 -- (-1299.432) (-1294.831) [-1250.294] (-1245.645) * [-1249.542] (-1296.029) (-1256.474) (-1274.519) -- 0:02:48
558000 -- (-1296.754) (-1302.063) (-1260.973) [-1250.364] * (-1246.824) (-1308.315) [-1253.824] (-1279.654) -- 0:02:47
559000 -- (-1294.540) (-1297.014) [-1255.130] (-1254.005) * [-1252.737] (-1294.216) (-1249.110) (-1290.394) -- 0:02:48
560000 -- (-1293.000) (-1296.575) (-1252.929) [-1246.724] * [-1247.253] (-1290.100) (-1260.930) (-1295.020) -- 0:02:47
Average standard deviation of split frequencies: 0.010710
561000 -- (-1300.539) (-1308.019) [-1249.166] (-1252.140) * [-1247.989] (-1296.536) (-1273.250) (-1285.149) -- 0:02:46
562000 -- (-1304.866) (-1299.825) (-1255.636) [-1255.376] * [-1246.439] (-1300.551) (-1260.448) (-1299.802) -- 0:02:46
563000 -- (-1306.447) (-1293.417) [-1252.672] (-1247.325) * (-1258.345) (-1303.635) [-1253.761] (-1281.749) -- 0:02:46
564000 -- (-1301.089) (-1295.228) [-1254.049] (-1249.840) * (-1252.492) (-1307.893) [-1251.875] (-1283.806) -- 0:02:46
565000 -- (-1307.176) (-1299.274) (-1248.143) [-1250.235] * [-1257.734] (-1292.009) (-1253.019) (-1288.498) -- 0:02:45
Average standard deviation of split frequencies: 0.010568
566000 -- (-1292.505) (-1302.938) [-1244.904] (-1258.552) * [-1252.151] (-1293.225) (-1257.777) (-1281.969) -- 0:02:44
567000 -- (-1295.965) (-1298.254) [-1249.965] (-1249.395) * [-1251.242] (-1297.709) (-1254.318) (-1290.821) -- 0:02:44
568000 -- (-1302.193) (-1294.283) [-1249.120] (-1249.506) * [-1243.343] (-1286.414) (-1255.815) (-1288.816) -- 0:02:44
569000 -- (-1303.450) (-1296.803) [-1249.340] (-1250.633) * [-1252.247] (-1292.953) (-1259.694) (-1287.242) -- 0:02:43
570000 -- (-1302.762) (-1291.943) (-1250.055) [-1255.358] * [-1247.537] (-1297.815) (-1254.013) (-1278.926) -- 0:02:43
Average standard deviation of split frequencies: 0.010702
571000 -- (-1307.214) (-1295.602) [-1244.577] (-1252.037) * [-1248.019] (-1295.237) (-1257.452) (-1279.649) -- 0:02:43
572000 -- (-1303.633) (-1293.555) (-1253.255) [-1247.566] * (-1250.868) (-1290.098) [-1245.005] (-1280.889) -- 0:02:43
573000 -- (-1299.381) (-1301.465) [-1251.837] (-1251.739) * [-1250.650] (-1309.815) (-1247.867) (-1280.179) -- 0:02:42
574000 -- (-1305.274) (-1297.656) [-1248.206] (-1266.639) * (-1246.538) (-1302.091) [-1253.194] (-1277.125) -- 0:02:41
575000 -- (-1309.243) (-1288.101) (-1248.399) [-1269.276] * (-1252.463) (-1295.173) [-1253.347] (-1286.538) -- 0:02:41
Average standard deviation of split frequencies: 0.010887
576000 -- (-1305.603) (-1292.727) [-1254.254] (-1246.735) * [-1253.125] (-1282.363) (-1257.103) (-1283.169) -- 0:02:41
577000 -- (-1306.341) (-1289.522) (-1250.627) [-1250.170] * (-1257.723) (-1304.977) [-1250.829] (-1280.329) -- 0:02:40
578000 -- (-1302.241) (-1295.437) [-1246.917] (-1245.652) * (-1266.935) (-1297.402) [-1255.487] (-1274.580) -- 0:02:40
579000 -- (-1304.184) (-1291.664) [-1246.343] (-1254.163) * (-1253.286) (-1295.356) [-1253.202] (-1277.694) -- 0:02:39
580000 -- (-1307.778) (-1303.508) [-1249.845] (-1259.271) * (-1245.159) (-1296.834) [-1254.235] (-1292.799) -- 0:02:40
Average standard deviation of split frequencies: 0.010915
581000 -- (-1306.124) (-1296.907) [-1244.314] (-1247.645) * [-1253.041] (-1305.600) (-1244.905) (-1289.822) -- 0:02:39
582000 -- (-1305.237) (-1291.249) (-1245.240) [-1263.329] * (-1248.392) (-1316.907) [-1253.128] (-1289.868) -- 0:02:38
583000 -- (-1289.027) (-1296.307) [-1251.213] (-1253.439) * [-1246.453] (-1303.557) (-1256.649) (-1292.268) -- 0:02:38
584000 -- (-1298.189) (-1288.274) (-1254.985) [-1252.449] * [-1255.474] (-1318.100) (-1258.093) (-1284.981) -- 0:02:38
585000 -- (-1308.035) (-1291.444) [-1243.715] (-1254.755) * [-1256.821] (-1290.520) (-1257.723) (-1283.474) -- 0:02:37
Average standard deviation of split frequencies: 0.010843
586000 -- (-1299.452) (-1296.308) [-1248.268] (-1254.891) * [-1245.869] (-1304.906) (-1249.283) (-1294.612) -- 0:02:37
587000 -- (-1296.030) (-1293.704) (-1250.518) [-1247.678] * [-1244.738] (-1307.093) (-1251.257) (-1295.114) -- 0:02:36
588000 -- (-1296.957) (-1310.291) (-1258.845) [-1249.535] * [-1248.714] (-1288.397) (-1251.351) (-1279.278) -- 0:02:36
589000 -- (-1297.538) (-1306.735) (-1252.503) [-1255.626] * (-1257.598) (-1294.496) [-1256.804] (-1281.254) -- 0:02:36
590000 -- (-1305.069) (-1302.052) (-1251.633) [-1251.727] * (-1252.967) (-1293.153) [-1256.142] (-1285.526) -- 0:02:35
Average standard deviation of split frequencies: 0.010809
591000 -- (-1301.160) (-1294.626) (-1252.551) [-1247.678] * (-1265.037) (-1300.787) [-1252.971] (-1286.690) -- 0:02:35
592000 -- (-1301.600) (-1298.058) [-1248.862] (-1249.634) * [-1257.730] (-1296.948) (-1257.473) (-1291.994) -- 0:02:35
593000 -- (-1314.966) (-1289.336) [-1255.714] (-1254.623) * [-1248.227] (-1297.465) (-1256.052) (-1284.213) -- 0:02:34
594000 -- (-1303.347) (-1294.118) [-1251.198] (-1252.005) * [-1257.032] (-1315.931) (-1253.210) (-1295.432) -- 0:02:34
595000 -- (-1308.000) (-1291.792) [-1262.380] (-1253.713) * [-1254.890] (-1294.399) (-1255.492) (-1295.535) -- 0:02:33
Average standard deviation of split frequencies: 0.010732
596000 -- (-1295.560) (-1300.608) (-1246.657) [-1253.149] * (-1253.658) (-1286.731) [-1256.867] (-1286.568) -- 0:02:33
597000 -- (-1308.108) (-1296.371) [-1252.760] (-1248.824) * (-1252.254) (-1291.349) [-1246.094] (-1287.487) -- 0:02:33
598000 -- (-1298.239) (-1306.668) (-1251.676) [-1253.674] * (-1259.144) (-1294.198) [-1254.786] (-1285.238) -- 0:02:32
599000 -- (-1292.031) (-1296.139) (-1259.605) [-1255.056] * (-1253.133) (-1298.255) [-1263.729] (-1289.347) -- 0:02:32
600000 -- (-1300.499) (-1295.531) (-1250.601) [-1251.205] * (-1255.405) (-1296.614) [-1252.635] (-1283.594) -- 0:02:32
Average standard deviation of split frequencies: 0.010952
601000 -- (-1293.123) (-1287.944) (-1255.084) [-1247.627] * [-1250.409] (-1298.317) (-1245.912) (-1294.539) -- 0:02:32
602000 -- (-1299.667) (-1297.903) (-1250.933) [-1249.360] * [-1242.769] (-1295.586) (-1254.259) (-1297.511) -- 0:02:31
603000 -- (-1300.002) (-1290.145) [-1246.102] (-1251.810) * [-1249.825] (-1310.002) (-1251.949) (-1286.936) -- 0:02:30
604000 -- (-1296.924) (-1294.797) (-1251.518) [-1257.852] * [-1254.284] (-1294.269) (-1259.722) (-1289.827) -- 0:02:30
605000 -- (-1297.068) (-1299.706) (-1251.005) [-1257.319] * (-1248.794) (-1303.545) [-1256.147] (-1286.473) -- 0:02:30
Average standard deviation of split frequencies: 0.010671
606000 -- (-1294.991) (-1303.597) (-1254.781) [-1259.198] * [-1246.669] (-1300.712) (-1264.244) (-1281.557) -- 0:02:29
607000 -- (-1301.384) (-1297.977) (-1255.316) [-1254.728] * [-1249.638] (-1304.257) (-1261.007) (-1276.237) -- 0:02:29
608000 -- (-1300.859) (-1288.092) (-1254.035) [-1251.296] * (-1252.337) (-1315.763) [-1249.063] (-1286.128) -- 0:02:28
609000 -- (-1293.006) (-1293.566) (-1257.013) [-1245.726] * [-1252.060] (-1324.825) (-1258.015) (-1295.212) -- 0:02:28
610000 -- (-1291.202) (-1296.566) [-1256.637] (-1249.433) * (-1252.631) (-1300.398) [-1248.886] (-1290.170) -- 0:02:28
Average standard deviation of split frequencies: 0.010965
611000 -- (-1284.078) (-1302.782) (-1256.170) [-1259.125] * (-1246.756) (-1293.045) [-1244.859] (-1285.692) -- 0:02:27
612000 -- (-1295.678) (-1291.242) [-1244.959] (-1251.372) * (-1257.134) (-1303.630) [-1251.789] (-1283.124) -- 0:02:27
613000 -- (-1300.786) (-1298.798) [-1249.461] (-1256.472) * (-1252.887) (-1295.044) [-1247.644] (-1283.768) -- 0:02:27
614000 -- (-1301.366) (-1302.995) [-1251.403] (-1253.221) * [-1252.783] (-1288.889) (-1265.125) (-1278.474) -- 0:02:26
615000 -- (-1298.661) (-1302.486) (-1247.571) [-1245.628] * (-1253.275) (-1289.416) [-1248.176] (-1284.893) -- 0:02:26
Average standard deviation of split frequencies: 0.010957
616000 -- (-1302.057) (-1306.383) [-1247.061] (-1243.836) * [-1247.313] (-1292.510) (-1245.620) (-1295.670) -- 0:02:25
617000 -- (-1299.662) (-1305.929) (-1248.357) [-1247.529] * (-1246.930) (-1300.433) [-1246.561] (-1297.533) -- 0:02:25
618000 -- (-1301.056) (-1301.639) (-1251.081) [-1255.091] * [-1255.921] (-1319.745) (-1249.385) (-1298.278) -- 0:02:25
619000 -- (-1300.956) (-1303.983) (-1252.311) [-1254.574] * [-1246.798] (-1292.746) (-1248.592) (-1282.285) -- 0:02:24
620000 -- (-1307.863) (-1297.748) [-1258.237] (-1247.085) * (-1254.761) (-1293.523) [-1243.204] (-1282.998) -- 0:02:24
Average standard deviation of split frequencies: 0.010685
621000 -- (-1299.830) (-1289.196) (-1247.676) [-1246.628] * (-1246.269) (-1297.832) [-1251.287] (-1290.045) -- 0:02:24
622000 -- (-1298.474) (-1303.353) (-1259.059) [-1255.371] * (-1248.709) (-1295.698) [-1245.819] (-1280.337) -- 0:02:23
623000 -- (-1289.550) (-1302.677) (-1247.483) [-1254.770] * (-1248.058) (-1314.178) [-1252.192] (-1291.622) -- 0:02:23
624000 -- (-1298.706) (-1298.013) (-1247.044) [-1240.592] * (-1243.065) (-1293.707) [-1257.803] (-1276.897) -- 0:02:22
625000 -- (-1299.952) (-1297.722) (-1256.485) [-1247.644] * [-1250.178] (-1316.898) (-1257.307) (-1279.842) -- 0:02:22
Average standard deviation of split frequencies: 0.010398
626000 -- (-1290.273) (-1296.520) (-1254.400) [-1253.712] * [-1241.106] (-1304.979) (-1254.749) (-1283.369) -- 0:02:22
627000 -- (-1301.851) (-1285.697) [-1254.341] (-1247.322) * (-1249.549) (-1308.828) [-1248.883] (-1283.483) -- 0:02:21
628000 -- (-1293.808) (-1292.683) (-1244.941) [-1256.714] * (-1255.939) (-1292.649) [-1250.048] (-1286.040) -- 0:02:21
629000 -- (-1294.522) (-1292.900) (-1249.492) [-1249.116] * [-1248.405] (-1299.884) (-1249.049) (-1298.986) -- 0:02:20
630000 -- (-1291.452) (-1293.459) [-1243.197] (-1254.685) * [-1255.872] (-1306.450) (-1251.561) (-1280.269) -- 0:02:20
Average standard deviation of split frequencies: 0.010415
631000 -- (-1302.046) (-1293.405) (-1250.804) [-1253.914] * (-1249.885) (-1296.450) [-1248.986] (-1294.234) -- 0:02:20
632000 -- (-1302.918) (-1290.698) (-1242.797) [-1249.402] * (-1254.061) (-1292.863) [-1262.752] (-1299.081) -- 0:02:19
633000 -- (-1305.823) (-1297.327) (-1249.774) [-1247.676] * (-1256.221) (-1295.653) [-1257.236] (-1285.765) -- 0:02:19
634000 -- (-1308.627) (-1291.803) (-1252.892) [-1253.011] * (-1249.192) (-1289.526) [-1249.537] (-1294.961) -- 0:02:19
635000 -- (-1309.041) (-1298.359) [-1256.320] (-1261.657) * [-1250.072] (-1288.335) (-1253.932) (-1287.824) -- 0:02:19
Average standard deviation of split frequencies: 0.010549
636000 -- (-1303.262) (-1305.151) [-1259.409] (-1244.883) * (-1258.668) (-1312.160) [-1252.066] (-1287.120) -- 0:02:18
637000 -- (-1296.120) (-1297.018) (-1254.718) [-1249.610] * (-1254.145) (-1290.492) [-1238.700] (-1279.550) -- 0:02:17
638000 -- (-1299.292) (-1294.377) [-1248.389] (-1248.272) * [-1243.373] (-1298.426) (-1260.089) (-1283.700) -- 0:02:17
639000 -- (-1294.397) (-1292.957) (-1245.525) [-1250.253] * (-1259.131) (-1305.253) [-1250.193] (-1287.934) -- 0:02:17
640000 -- (-1295.301) (-1305.147) [-1257.457] (-1260.224) * [-1254.090] (-1291.673) (-1263.628) (-1281.036) -- 0:02:16
Average standard deviation of split frequencies: 0.010494
641000 -- (-1297.732) (-1299.468) [-1250.018] (-1246.300) * (-1246.065) (-1300.338) [-1244.025] (-1283.260) -- 0:02:16
642000 -- (-1291.215) (-1297.822) [-1242.905] (-1266.911) * (-1252.601) (-1293.434) [-1249.917] (-1285.261) -- 0:02:16
643000 -- (-1307.671) (-1303.230) [-1242.258] (-1258.494) * [-1252.807] (-1305.077) (-1253.138) (-1281.642) -- 0:02:16
644000 -- (-1299.749) (-1289.455) [-1251.129] (-1253.165) * (-1262.542) (-1293.071) [-1270.267] (-1292.524) -- 0:02:15
645000 -- (-1294.533) (-1301.263) [-1249.416] (-1248.718) * [-1258.792] (-1290.583) (-1259.526) (-1302.388) -- 0:02:14
Average standard deviation of split frequencies: 0.009921
646000 -- (-1307.759) (-1298.918) (-1253.059) [-1249.512] * (-1246.757) (-1296.153) [-1251.257] (-1280.672) -- 0:02:14
647000 -- (-1295.759) (-1290.799) (-1255.633) [-1254.411] * [-1242.794] (-1302.421) (-1246.900) (-1285.605) -- 0:02:14
648000 -- (-1310.846) (-1304.378) [-1243.715] (-1244.615) * [-1245.339] (-1294.924) (-1254.180) (-1286.505) -- 0:02:13
649000 -- (-1295.807) (-1289.570) (-1253.291) [-1246.533] * (-1252.236) (-1302.946) [-1254.512] (-1281.459) -- 0:02:13
650000 -- (-1305.636) (-1286.133) [-1252.597] (-1247.934) * [-1246.297] (-1290.426) (-1248.598) (-1282.017) -- 0:02:13
Average standard deviation of split frequencies: 0.009828
651000 -- (-1289.960) (-1293.939) [-1246.788] (-1245.343) * [-1254.161] (-1294.427) (-1253.521) (-1294.477) -- 0:02:12
652000 -- (-1306.004) (-1297.039) [-1249.481] (-1245.001) * [-1248.626] (-1307.043) (-1249.316) (-1279.399) -- 0:02:12
653000 -- (-1291.750) (-1303.750) [-1255.901] (-1257.210) * (-1248.007) (-1286.610) [-1244.873] (-1284.873) -- 0:02:11
654000 -- (-1297.637) (-1297.618) [-1247.440] (-1251.708) * [-1246.680] (-1301.402) (-1254.721) (-1282.533) -- 0:02:11
655000 -- (-1304.361) (-1285.891) [-1246.494] (-1253.501) * [-1244.222] (-1292.195) (-1256.701) (-1285.090) -- 0:02:11
Average standard deviation of split frequencies: 0.009897
656000 -- (-1315.342) (-1299.456) [-1247.520] (-1260.007) * [-1249.794] (-1291.665) (-1255.556) (-1296.698) -- 0:02:11
657000 -- (-1297.760) (-1299.856) (-1247.299) [-1251.476] * [-1256.831] (-1299.871) (-1244.489) (-1290.210) -- 0:02:10
658000 -- (-1299.626) (-1297.467) (-1250.659) [-1244.520] * [-1255.213] (-1301.847) (-1249.694) (-1290.035) -- 0:02:09
659000 -- (-1297.990) (-1299.550) [-1252.611] (-1249.188) * (-1260.282) (-1304.810) [-1251.510] (-1283.883) -- 0:02:09
660000 -- (-1296.938) (-1297.510) [-1246.976] (-1250.918) * (-1251.139) (-1292.681) [-1246.332] (-1289.512) -- 0:02:09
Average standard deviation of split frequencies: 0.009973
661000 -- (-1301.319) (-1301.163) (-1256.161) [-1251.611] * (-1245.171) (-1286.875) [-1248.738] (-1284.233) -- 0:02:08
662000 -- (-1295.665) (-1286.712) [-1250.993] (-1264.719) * (-1243.232) (-1296.566) [-1250.561] (-1287.100) -- 0:02:08
663000 -- (-1296.912) (-1291.991) [-1249.849] (-1257.195) * [-1247.478] (-1295.216) (-1254.459) (-1278.062) -- 0:02:08
664000 -- (-1310.790) (-1285.761) (-1261.774) [-1245.589] * (-1257.476) (-1290.562) [-1252.155] (-1298.951) -- 0:02:08
665000 -- (-1295.678) (-1302.452) (-1256.039) [-1247.095] * (-1250.708) (-1294.902) [-1252.634] (-1282.796) -- 0:02:07
Average standard deviation of split frequencies: 0.009261
666000 -- (-1302.627) (-1294.326) (-1251.227) [-1252.653] * (-1255.819) (-1302.736) [-1243.661] (-1286.320) -- 0:02:06
667000 -- (-1298.495) (-1289.531) (-1258.773) [-1248.439] * (-1254.667) (-1298.360) [-1249.266] (-1285.358) -- 0:02:06
668000 -- (-1294.615) (-1293.841) (-1252.810) [-1251.348] * (-1254.906) (-1297.677) [-1255.280] (-1280.609) -- 0:02:06
669000 -- (-1300.422) (-1293.327) [-1244.601] (-1262.465) * (-1256.472) (-1288.691) [-1252.441] (-1286.345) -- 0:02:05
670000 -- (-1287.067) (-1290.549) (-1255.892) [-1245.477] * (-1260.001) (-1290.746) [-1248.202] (-1284.151) -- 0:02:05
Average standard deviation of split frequencies: 0.009658
671000 -- (-1305.284) (-1300.654) (-1251.267) [-1245.618] * [-1261.456] (-1297.329) (-1252.743) (-1286.501) -- 0:02:05
672000 -- (-1299.421) (-1309.664) (-1252.597) [-1249.676] * (-1255.240) (-1290.841) [-1244.365] (-1295.528) -- 0:02:04
673000 -- (-1310.326) (-1299.233) (-1249.160) [-1256.155] * (-1258.528) (-1302.032) [-1251.976] (-1298.057) -- 0:02:04
674000 -- (-1304.085) (-1299.278) [-1249.845] (-1256.843) * [-1247.754] (-1295.744) (-1244.599) (-1287.923) -- 0:02:03
675000 -- (-1312.455) (-1303.814) [-1253.645] (-1259.889) * [-1250.619] (-1303.731) (-1249.413) (-1294.529) -- 0:02:03
Average standard deviation of split frequencies: 0.009677
676000 -- (-1298.864) (-1295.774) (-1260.646) [-1259.391] * (-1254.831) (-1298.460) [-1247.676] (-1288.557) -- 0:02:03
677000 -- (-1301.251) (-1299.590) (-1256.638) [-1248.172] * [-1247.225] (-1299.269) (-1247.831) (-1287.252) -- 0:02:03
678000 -- (-1297.565) (-1301.566) (-1249.473) [-1249.741] * (-1257.072) (-1297.609) [-1258.075] (-1289.090) -- 0:02:02
679000 -- (-1297.089) (-1285.283) (-1259.081) [-1252.951] * (-1247.373) (-1293.982) [-1242.162] (-1287.908) -- 0:02:01
680000 -- (-1305.767) (-1294.105) [-1244.382] (-1253.050) * [-1250.860] (-1296.780) (-1252.319) (-1303.187) -- 0:02:01
Average standard deviation of split frequencies: 0.009946
681000 -- (-1295.572) (-1289.765) (-1250.606) [-1245.859] * [-1251.003] (-1296.961) (-1253.180) (-1282.881) -- 0:02:01
682000 -- (-1299.062) (-1295.241) (-1259.731) [-1247.866] * (-1250.570) (-1287.999) [-1252.949] (-1294.708) -- 0:02:00
683000 -- (-1309.976) (-1291.822) (-1254.103) [-1247.528] * (-1256.887) (-1304.122) [-1247.364] (-1299.171) -- 0:02:00
684000 -- (-1306.907) (-1292.034) [-1249.021] (-1248.461) * (-1254.796) (-1309.815) [-1245.076] (-1286.043) -- 0:02:00
685000 -- (-1301.706) (-1291.275) [-1253.901] (-1251.880) * (-1246.782) (-1292.721) [-1246.581] (-1290.975) -- 0:02:00
Average standard deviation of split frequencies: 0.009701
686000 -- (-1301.841) (-1297.284) [-1255.685] (-1247.721) * (-1243.400) (-1303.190) [-1245.758] (-1289.738) -- 0:01:59
687000 -- (-1302.542) (-1305.847) (-1250.720) [-1248.217] * (-1245.436) (-1294.346) [-1255.142] (-1289.217) -- 0:01:58
688000 -- (-1302.438) (-1297.448) (-1242.541) [-1247.588] * (-1252.754) (-1296.050) [-1257.484] (-1291.174) -- 0:01:58
689000 -- (-1303.010) (-1286.329) (-1253.972) [-1246.083] * [-1257.852] (-1294.509) (-1249.844) (-1283.965) -- 0:01:58
690000 -- (-1291.589) (-1289.245) [-1255.010] (-1254.594) * (-1262.686) (-1289.278) [-1253.967] (-1285.746) -- 0:01:58
Average standard deviation of split frequencies: 0.009778
691000 -- (-1294.210) (-1300.018) [-1255.954] (-1254.402) * [-1246.952] (-1288.307) (-1258.373) (-1285.666) -- 0:01:57
692000 -- (-1300.191) (-1288.989) [-1248.728] (-1263.119) * (-1244.464) (-1290.699) [-1255.431] (-1281.173) -- 0:01:57
693000 -- (-1296.368) (-1298.676) [-1246.097] (-1254.076) * (-1254.734) (-1308.754) [-1251.563] (-1284.865) -- 0:01:56
694000 -- (-1298.209) (-1288.951) [-1246.910] (-1251.177) * (-1268.078) (-1287.598) [-1251.341] (-1296.084) -- 0:01:56
695000 -- (-1298.723) (-1300.395) (-1249.427) [-1245.522] * (-1259.107) (-1298.779) [-1254.301] (-1288.581) -- 0:01:55
Average standard deviation of split frequencies: 0.009958
696000 -- (-1296.265) (-1294.163) (-1259.887) [-1252.759] * (-1258.512) (-1285.827) [-1249.393] (-1287.032) -- 0:01:55
697000 -- (-1308.581) (-1293.753) [-1251.838] (-1246.347) * (-1262.032) (-1295.090) [-1251.243] (-1295.864) -- 0:01:55
698000 -- (-1306.982) (-1303.561) [-1245.694] (-1249.454) * [-1252.068] (-1300.201) (-1247.690) (-1287.029) -- 0:01:55
699000 -- (-1300.155) (-1286.557) (-1254.415) [-1249.891] * [-1251.982] (-1299.168) (-1254.049) (-1280.618) -- 0:01:54
700000 -- (-1305.573) (-1288.656) (-1253.964) [-1251.523] * [-1253.152] (-1293.847) (-1253.935) (-1275.977) -- 0:01:54
Average standard deviation of split frequencies: 0.010197
701000 -- (-1309.516) (-1295.290) (-1260.001) [-1251.296] * [-1258.430] (-1288.210) (-1260.063) (-1293.746) -- 0:01:53
702000 -- (-1296.443) (-1286.392) (-1258.437) [-1248.212] * [-1245.100] (-1295.161) (-1252.360) (-1288.894) -- 0:01:53
703000 -- (-1294.652) (-1295.594) [-1251.551] (-1271.707) * (-1248.920) (-1297.366) [-1265.799] (-1280.164) -- 0:01:52
704000 -- (-1302.125) (-1298.080) [-1253.633] (-1261.040) * [-1243.942] (-1291.150) (-1256.798) (-1284.039) -- 0:01:52
705000 -- (-1302.304) (-1293.033) [-1243.623] (-1270.357) * (-1254.691) (-1288.819) [-1242.637] (-1284.586) -- 0:01:52
Average standard deviation of split frequencies: 0.009696
706000 -- (-1303.436) (-1297.436) [-1246.877] (-1262.427) * (-1256.741) (-1294.569) [-1246.418] (-1277.507) -- 0:01:52
707000 -- (-1308.493) (-1302.482) [-1255.741] (-1260.432) * (-1248.858) (-1303.096) [-1246.971] (-1296.937) -- 0:01:51
708000 -- (-1298.739) (-1292.547) [-1250.410] (-1247.385) * [-1243.939] (-1295.079) (-1250.660) (-1283.261) -- 0:01:50
709000 -- (-1295.487) (-1294.640) (-1251.040) [-1243.321] * (-1250.612) (-1293.559) [-1255.266] (-1293.443) -- 0:01:50
710000 -- (-1296.493) (-1292.590) (-1254.784) [-1247.483] * [-1248.117] (-1295.920) (-1243.233) (-1285.333) -- 0:01:50
Average standard deviation of split frequencies: 0.009705
711000 -- (-1304.742) (-1301.953) [-1252.970] (-1246.913) * (-1251.836) (-1302.960) [-1247.181] (-1301.171) -- 0:01:50
712000 -- (-1310.419) (-1289.457) (-1259.687) [-1250.062] * [-1246.823] (-1294.066) (-1245.405) (-1288.468) -- 0:01:49
713000 -- (-1307.939) (-1293.460) (-1254.940) [-1250.714] * (-1251.021) (-1295.290) [-1246.482] (-1291.549) -- 0:01:49
714000 -- (-1300.514) (-1316.203) (-1250.777) [-1253.036] * (-1260.965) (-1299.885) [-1246.924] (-1287.721) -- 0:01:48
715000 -- (-1290.799) (-1316.292) [-1248.220] (-1248.582) * [-1250.189] (-1289.558) (-1248.429) (-1291.327) -- 0:01:48
Average standard deviation of split frequencies: 0.009876
716000 -- (-1298.475) (-1298.614) (-1250.031) [-1251.668] * [-1249.281] (-1287.635) (-1246.352) (-1281.346) -- 0:01:47
717000 -- (-1290.644) (-1306.174) (-1249.140) [-1248.291] * [-1246.660] (-1298.901) (-1247.926) (-1275.073) -- 0:01:47
718000 -- (-1294.252) (-1295.177) (-1247.508) [-1253.208] * [-1254.126] (-1297.014) (-1248.321) (-1290.697) -- 0:01:47
719000 -- (-1303.708) (-1299.762) [-1246.118] (-1250.391) * [-1245.509] (-1296.681) (-1251.393) (-1295.931) -- 0:01:47
720000 -- (-1302.286) (-1297.395) (-1252.747) [-1251.592] * [-1251.544] (-1301.848) (-1248.953) (-1282.729) -- 0:01:46
Average standard deviation of split frequencies: 0.010406
721000 -- (-1298.471) (-1305.289) (-1260.501) [-1251.177] * (-1247.616) (-1302.104) [-1248.739] (-1282.045) -- 0:01:46
722000 -- (-1335.149) (-1295.148) [-1260.526] (-1245.906) * (-1253.957) (-1300.351) [-1245.676] (-1292.106) -- 0:01:45
723000 -- (-1305.031) (-1292.359) (-1253.454) [-1252.487] * (-1252.187) (-1301.833) [-1241.992] (-1288.840) -- 0:01:45
724000 -- (-1293.966) (-1297.727) (-1249.956) [-1246.086] * (-1258.380) (-1290.704) [-1241.811] (-1289.311) -- 0:01:44
725000 -- (-1300.588) (-1292.709) [-1241.263] (-1255.425) * [-1251.258] (-1285.434) (-1257.786) (-1292.903) -- 0:01:44
Average standard deviation of split frequencies: 0.010276
726000 -- (-1312.303) (-1301.339) [-1250.073] (-1250.230) * (-1251.877) (-1290.055) [-1247.563] (-1295.238) -- 0:01:44
727000 -- (-1291.645) (-1303.875) (-1244.814) [-1251.634] * [-1250.557] (-1295.432) (-1249.264) (-1285.418) -- 0:01:44
728000 -- (-1295.795) (-1296.334) (-1250.783) [-1251.021] * (-1254.637) (-1296.959) [-1245.787] (-1286.300) -- 0:01:43
729000 -- (-1299.249) (-1293.683) (-1250.844) [-1247.713] * [-1249.796] (-1294.336) (-1254.580) (-1290.458) -- 0:01:42
730000 -- (-1299.358) (-1295.034) [-1250.153] (-1252.822) * (-1248.581) (-1291.108) [-1245.996] (-1281.872) -- 0:01:42
Average standard deviation of split frequencies: 0.010117
731000 -- (-1297.227) (-1304.224) (-1260.648) [-1246.006] * (-1260.559) (-1295.467) [-1249.767] (-1288.380) -- 0:01:42
732000 -- (-1298.070) (-1309.624) [-1248.203] (-1245.781) * [-1247.850] (-1287.312) (-1256.393) (-1292.854) -- 0:01:42
733000 -- (-1297.107) (-1299.709) (-1251.934) [-1246.580] * (-1249.201) (-1297.143) [-1254.614] (-1284.628) -- 0:01:41
734000 -- (-1299.440) (-1297.473) (-1254.026) [-1250.377] * [-1242.653] (-1286.755) (-1248.065) (-1286.305) -- 0:01:41
735000 -- (-1307.924) (-1296.801) [-1248.367] (-1248.772) * [-1245.206] (-1294.233) (-1247.318) (-1280.440) -- 0:01:40
Average standard deviation of split frequencies: 0.010148
736000 -- (-1295.769) (-1294.469) [-1247.192] (-1258.597) * [-1252.424] (-1294.133) (-1248.096) (-1282.920) -- 0:01:40
737000 -- (-1297.044) (-1293.115) (-1259.390) [-1244.857] * [-1252.043] (-1309.575) (-1248.788) (-1285.885) -- 0:01:39
738000 -- (-1299.219) (-1301.926) (-1247.679) [-1251.129] * [-1246.681] (-1306.852) (-1249.595) (-1294.336) -- 0:01:39
739000 -- (-1315.918) (-1288.719) [-1254.429] (-1257.930) * (-1250.267) (-1293.625) [-1255.568] (-1288.685) -- 0:01:39
740000 -- (-1300.655) (-1300.495) [-1258.815] (-1256.327) * (-1248.320) (-1301.970) [-1252.493] (-1285.396) -- 0:01:39
Average standard deviation of split frequencies: 0.010156
741000 -- (-1292.114) (-1304.968) (-1251.485) [-1251.815] * [-1257.030] (-1294.609) (-1252.636) (-1293.984) -- 0:01:38
742000 -- (-1303.042) (-1308.512) [-1251.311] (-1248.007) * (-1267.917) (-1290.789) [-1244.611] (-1288.629) -- 0:01:38
743000 -- (-1302.701) (-1303.355) (-1253.529) [-1253.786] * [-1256.961] (-1291.217) (-1247.108) (-1278.031) -- 0:01:37
744000 -- (-1300.658) (-1301.651) [-1246.703] (-1256.445) * [-1249.333] (-1299.363) (-1246.166) (-1287.973) -- 0:01:37
745000 -- (-1304.418) (-1297.827) (-1256.232) [-1256.375] * (-1251.471) (-1300.154) [-1255.477] (-1290.919) -- 0:01:36
Average standard deviation of split frequencies: 0.010295
746000 -- (-1293.863) (-1312.555) [-1251.036] (-1258.396) * [-1254.854] (-1295.387) (-1250.686) (-1301.325) -- 0:01:36
747000 -- (-1299.411) (-1284.156) [-1248.273] (-1265.923) * [-1255.770] (-1296.240) (-1258.476) (-1299.888) -- 0:01:36
748000 -- (-1295.248) (-1293.150) [-1254.092] (-1262.197) * (-1259.419) (-1290.257) [-1250.808] (-1287.542) -- 0:01:36
749000 -- (-1294.517) (-1297.011) [-1248.998] (-1263.849) * (-1262.270) (-1298.135) [-1253.909] (-1285.914) -- 0:01:35
750000 -- (-1299.863) (-1295.024) [-1257.122] (-1253.946) * [-1256.279] (-1290.848) (-1250.939) (-1289.577) -- 0:01:35
Average standard deviation of split frequencies: 0.010299
751000 -- (-1293.692) (-1292.585) [-1250.932] (-1259.506) * [-1252.359] (-1295.388) (-1255.800) (-1275.272) -- 0:01:34
752000 -- (-1293.253) (-1293.827) (-1251.701) [-1245.870] * [-1248.421] (-1290.187) (-1259.752) (-1278.853) -- 0:01:34
753000 -- (-1293.456) (-1298.432) (-1250.616) [-1244.522] * [-1248.098] (-1298.141) (-1248.382) (-1290.890) -- 0:01:34
754000 -- (-1294.677) (-1300.137) [-1259.728] (-1247.963) * (-1257.856) (-1309.551) [-1254.632] (-1292.652) -- 0:01:33
755000 -- (-1290.551) (-1295.652) [-1250.457] (-1255.828) * [-1254.027] (-1301.205) (-1255.812) (-1294.242) -- 0:01:33
Average standard deviation of split frequencies: 0.010657
756000 -- (-1300.149) (-1297.900) (-1255.256) [-1256.581] * (-1248.160) (-1294.615) [-1249.279] (-1303.754) -- 0:01:32
757000 -- (-1298.368) (-1297.590) (-1254.775) [-1250.279] * (-1254.464) (-1303.331) [-1245.776] (-1287.578) -- 0:01:32
758000 -- (-1299.872) (-1289.434) [-1253.650] (-1247.612) * (-1251.608) (-1295.087) [-1245.958] (-1296.067) -- 0:01:31
759000 -- (-1301.198) (-1297.071) (-1257.526) [-1249.349] * (-1257.493) (-1295.558) [-1251.037] (-1285.764) -- 0:01:31
760000 -- (-1306.134) (-1302.453) (-1247.579) [-1251.901] * (-1251.819) (-1302.190) [-1250.913] (-1282.502) -- 0:01:31
Average standard deviation of split frequencies: 0.010718
761000 -- (-1308.458) (-1297.191) [-1251.169] (-1254.454) * [-1248.476] (-1298.834) (-1251.751) (-1285.036) -- 0:01:31
762000 -- (-1295.515) (-1299.837) (-1260.276) [-1247.325] * (-1247.534) (-1299.975) [-1258.181] (-1299.122) -- 0:01:30
763000 -- (-1297.599) (-1296.350) [-1246.894] (-1254.150) * [-1253.528] (-1303.586) (-1248.601) (-1285.982) -- 0:01:30
764000 -- (-1298.183) (-1290.564) [-1246.179] (-1254.915) * (-1248.920) (-1290.347) [-1257.076] (-1284.166) -- 0:01:29
765000 -- (-1309.640) (-1295.227) [-1248.723] (-1253.572) * (-1257.386) (-1303.092) [-1250.037] (-1288.751) -- 0:01:29
Average standard deviation of split frequencies: 0.010722
766000 -- (-1306.286) (-1286.094) (-1250.793) [-1252.278] * (-1261.245) (-1294.063) [-1248.707] (-1284.367) -- 0:01:28
767000 -- (-1307.111) (-1300.182) [-1259.036] (-1248.333) * [-1250.479] (-1295.916) (-1248.541) (-1286.228) -- 0:01:28
768000 -- (-1303.049) (-1290.450) (-1262.292) [-1252.312] * (-1261.878) (-1295.280) [-1264.313] (-1278.072) -- 0:01:28
769000 -- (-1291.666) (-1309.391) (-1246.924) [-1260.315] * (-1253.002) (-1300.416) [-1250.230] (-1283.967) -- 0:01:28
770000 -- (-1290.300) (-1316.176) [-1245.496] (-1253.317) * [-1242.738] (-1298.992) (-1258.820) (-1283.105) -- 0:01:27
Average standard deviation of split frequencies: 0.010585
771000 -- (-1290.552) (-1283.916) [-1254.102] (-1246.259) * [-1254.231] (-1309.091) (-1258.609) (-1276.089) -- 0:01:27
772000 -- (-1295.156) (-1291.261) [-1245.445] (-1253.048) * [-1248.469] (-1288.757) (-1254.198) (-1282.394) -- 0:01:26
773000 -- (-1296.442) (-1306.108) (-1255.440) [-1242.856] * [-1248.946] (-1288.740) (-1246.191) (-1291.853) -- 0:01:26
774000 -- (-1288.644) (-1305.644) [-1249.638] (-1248.703) * [-1251.521] (-1300.877) (-1256.586) (-1281.946) -- 0:01:25
775000 -- (-1305.761) (-1302.572) (-1254.361) [-1251.893] * [-1244.973] (-1290.815) (-1252.168) (-1289.796) -- 0:01:25
Average standard deviation of split frequencies: 0.010645
776000 -- (-1293.206) (-1286.151) [-1247.244] (-1252.276) * (-1247.900) (-1292.087) [-1249.445] (-1301.413) -- 0:01:25
777000 -- (-1288.896) (-1301.115) [-1253.864] (-1254.965) * [-1247.427] (-1298.701) (-1253.931) (-1291.257) -- 0:01:24
778000 -- (-1286.742) (-1294.791) [-1249.852] (-1261.650) * [-1243.662] (-1297.828) (-1254.511) (-1279.306) -- 0:01:24
779000 -- (-1289.588) (-1306.728) (-1254.212) [-1252.847] * (-1251.822) (-1303.980) [-1248.507] (-1282.499) -- 0:01:23
780000 -- (-1297.115) (-1309.609) (-1254.454) [-1249.904] * (-1248.942) (-1296.898) [-1241.574] (-1290.874) -- 0:01:23
Average standard deviation of split frequencies: 0.010628
781000 -- (-1294.611) (-1291.221) (-1251.028) [-1246.522] * [-1252.056] (-1299.882) (-1256.055) (-1288.070) -- 0:01:23
782000 -- (-1288.374) (-1299.567) [-1245.735] (-1252.921) * (-1254.049) (-1292.291) [-1252.455] (-1286.015) -- 0:01:22
783000 -- (-1303.806) (-1302.463) [-1253.733] (-1257.706) * [-1255.338] (-1299.774) (-1251.178) (-1292.945) -- 0:01:22
784000 -- (-1315.429) (-1291.154) (-1256.984) [-1248.578] * (-1251.952) (-1310.120) [-1248.254] (-1292.473) -- 0:01:22
785000 -- (-1296.107) (-1310.729) (-1248.227) [-1245.516] * [-1257.139] (-1301.333) (-1252.768) (-1303.169) -- 0:01:21
Average standard deviation of split frequencies: 0.010374
786000 -- (-1294.296) (-1281.504) (-1255.002) [-1245.874] * (-1251.286) (-1307.799) [-1249.983] (-1282.497) -- 0:01:21
787000 -- (-1309.302) (-1298.665) (-1258.445) [-1251.234] * [-1247.220] (-1293.971) (-1254.319) (-1291.610) -- 0:01:20
788000 -- (-1296.620) (-1293.808) (-1259.861) [-1248.441] * [-1245.060] (-1288.441) (-1259.158) (-1283.268) -- 0:01:20
789000 -- (-1306.180) (-1292.381) (-1264.765) [-1248.079] * [-1246.335] (-1294.777) (-1254.648) (-1292.429) -- 0:01:20
790000 -- (-1303.415) (-1301.026) [-1257.186] (-1250.659) * (-1243.752) (-1297.673) [-1245.955] (-1285.865) -- 0:01:19
Average standard deviation of split frequencies: 0.010563
791000 -- (-1294.898) (-1291.657) [-1245.421] (-1256.287) * (-1249.979) (-1295.380) [-1254.072] (-1291.043) -- 0:01:19
792000 -- (-1300.154) (-1292.030) (-1249.162) [-1248.448] * [-1248.677] (-1299.959) (-1258.260) (-1299.016) -- 0:01:19
793000 -- (-1289.520) (-1296.457) (-1248.262) [-1245.916] * [-1245.160] (-1299.839) (-1249.107) (-1302.095) -- 0:01:18
794000 -- (-1290.173) (-1295.915) [-1244.504] (-1256.877) * [-1242.879] (-1301.414) (-1246.067) (-1283.929) -- 0:01:18
795000 -- (-1295.128) (-1294.983) [-1246.769] (-1255.106) * [-1251.209] (-1305.558) (-1250.212) (-1282.523) -- 0:01:17
Average standard deviation of split frequencies: 0.010449
796000 -- (-1290.334) (-1297.604) (-1257.787) [-1241.305] * [-1261.307] (-1299.986) (-1258.858) (-1298.429) -- 0:01:17
797000 -- (-1293.528) (-1290.722) (-1254.022) [-1252.385] * (-1251.980) (-1293.820) [-1244.936] (-1281.116) -- 0:01:17
798000 -- (-1295.760) (-1303.511) [-1246.014] (-1263.733) * [-1245.777] (-1295.411) (-1252.800) (-1281.919) -- 0:01:16
799000 -- (-1300.234) (-1305.545) [-1255.061] (-1262.323) * [-1244.621] (-1297.096) (-1251.283) (-1277.316) -- 0:01:16
800000 -- (-1296.934) (-1295.489) (-1246.443) [-1264.741] * [-1257.513] (-1290.730) (-1253.458) (-1282.554) -- 0:01:16
Average standard deviation of split frequencies: 0.010283
801000 -- (-1302.807) (-1298.452) (-1258.360) [-1254.297] * (-1253.405) (-1293.075) [-1248.371] (-1275.549) -- 0:01:15
802000 -- (-1285.888) (-1288.908) [-1252.181] (-1251.617) * (-1257.018) (-1304.383) [-1251.493] (-1272.793) -- 0:01:15
803000 -- (-1290.264) (-1292.961) [-1251.115] (-1253.485) * (-1252.736) (-1296.710) [-1246.258] (-1286.123) -- 0:01:14
804000 -- (-1310.024) (-1303.841) [-1245.305] (-1258.701) * (-1266.804) (-1298.169) [-1256.581] (-1289.353) -- 0:01:14
805000 -- (-1301.928) (-1296.329) [-1246.515] (-1247.253) * (-1258.851) (-1295.532) [-1252.904] (-1281.740) -- 0:01:14
Average standard deviation of split frequencies: 0.010034
806000 -- (-1300.397) (-1285.938) [-1248.715] (-1248.655) * [-1255.779] (-1302.105) (-1250.720) (-1285.021) -- 0:01:13
807000 -- (-1295.918) (-1297.130) [-1247.683] (-1251.052) * (-1246.155) (-1290.509) [-1252.793] (-1280.694) -- 0:01:13
808000 -- (-1292.641) (-1286.975) [-1245.075] (-1254.222) * [-1242.835] (-1300.116) (-1252.668) (-1283.169) -- 0:01:12
809000 -- (-1300.342) (-1290.118) (-1252.974) [-1244.669] * [-1247.945] (-1291.959) (-1251.360) (-1282.051) -- 0:01:12
810000 -- (-1313.348) (-1300.738) (-1250.755) [-1249.858] * [-1245.329] (-1297.627) (-1251.275) (-1292.156) -- 0:01:12
Average standard deviation of split frequencies: 0.010118
811000 -- (-1296.983) (-1311.581) [-1249.211] (-1251.668) * [-1244.599] (-1295.776) (-1253.390) (-1285.826) -- 0:01:11
812000 -- (-1302.325) (-1295.153) (-1249.896) [-1243.925] * [-1247.838] (-1297.448) (-1252.763) (-1278.600) -- 0:01:11
813000 -- (-1301.180) (-1296.826) (-1259.710) [-1250.187] * (-1263.231) (-1294.565) [-1247.838] (-1288.777) -- 0:01:11
814000 -- (-1303.668) (-1297.518) [-1245.749] (-1256.018) * [-1251.760] (-1292.720) (-1251.807) (-1278.248) -- 0:01:10
815000 -- (-1300.366) (-1298.977) (-1253.181) [-1246.437] * (-1251.231) (-1304.174) [-1246.343] (-1289.867) -- 0:01:10
Average standard deviation of split frequencies: 0.009885
816000 -- (-1311.864) (-1285.319) (-1248.156) [-1250.567] * (-1254.247) (-1299.464) [-1249.990] (-1274.877) -- 0:01:09
817000 -- (-1298.141) (-1309.253) (-1257.919) [-1251.130] * (-1251.647) (-1301.744) [-1252.703] (-1279.334) -- 0:01:09
818000 -- (-1312.450) (-1297.901) [-1244.014] (-1255.556) * (-1251.760) (-1291.449) [-1256.241] (-1292.054) -- 0:01:09
819000 -- (-1289.102) (-1291.238) (-1251.320) [-1249.083] * [-1254.016] (-1309.911) (-1252.441) (-1292.740) -- 0:01:08
820000 -- (-1288.543) (-1293.845) (-1248.227) [-1253.689] * (-1259.772) (-1305.070) [-1250.167] (-1287.540) -- 0:01:08
Average standard deviation of split frequencies: 0.009791
821000 -- (-1291.519) (-1299.341) [-1242.351] (-1260.656) * (-1248.785) (-1324.375) [-1245.133] (-1289.113) -- 0:01:08
822000 -- (-1294.520) (-1301.369) (-1253.180) [-1252.942] * (-1246.423) (-1307.949) [-1244.624] (-1286.428) -- 0:01:07
823000 -- (-1295.057) (-1300.400) (-1250.048) [-1246.124] * [-1249.366] (-1304.425) (-1256.949) (-1278.574) -- 0:01:07
824000 -- (-1303.939) (-1293.770) (-1251.222) [-1247.661] * (-1248.680) (-1302.389) [-1246.735] (-1288.594) -- 0:01:06
825000 -- (-1295.487) (-1294.461) [-1248.654] (-1247.159) * [-1248.061] (-1292.187) (-1269.510) (-1296.100) -- 0:01:06
Average standard deviation of split frequencies: 0.009897
826000 -- (-1307.586) (-1305.322) [-1254.852] (-1259.163) * (-1255.957) (-1308.144) [-1257.907] (-1288.172) -- 0:01:06
827000 -- (-1308.965) (-1291.632) [-1251.380] (-1251.814) * (-1251.418) (-1296.238) [-1249.490] (-1287.596) -- 0:01:05
828000 -- (-1293.645) (-1310.396) (-1254.245) [-1248.491] * (-1260.741) (-1296.737) [-1260.214] (-1298.704) -- 0:01:05
829000 -- (-1301.364) (-1289.259) (-1255.116) [-1251.318] * [-1264.009] (-1286.171) (-1253.681) (-1280.072) -- 0:01:04
830000 -- (-1293.316) (-1288.517) (-1255.702) [-1251.951] * [-1252.354] (-1310.532) (-1253.415) (-1285.236) -- 0:01:04
Average standard deviation of split frequencies: 0.009880
831000 -- (-1289.705) (-1287.175) [-1253.068] (-1258.907) * [-1249.082] (-1298.444) (-1253.821) (-1280.012) -- 0:01:04
832000 -- (-1295.473) (-1291.063) [-1257.927] (-1266.449) * [-1249.550] (-1296.944) (-1250.953) (-1288.771) -- 0:01:03
833000 -- (-1305.986) (-1296.328) [-1247.817] (-1251.314) * (-1259.043) (-1298.253) [-1252.662] (-1298.974) -- 0:01:03
834000 -- (-1313.488) (-1288.136) (-1257.957) [-1246.362] * (-1263.370) (-1291.105) [-1247.856] (-1292.159) -- 0:01:03
835000 -- (-1304.174) (-1304.305) [-1250.953] (-1250.518) * [-1249.287] (-1300.480) (-1264.507) (-1293.770) -- 0:01:02
Average standard deviation of split frequencies: 0.009826
836000 -- (-1296.318) (-1297.522) [-1245.678] (-1260.502) * (-1252.353) (-1308.827) [-1252.861] (-1282.023) -- 0:01:02
837000 -- (-1321.327) (-1287.805) [-1244.592] (-1257.491) * (-1247.892) (-1302.415) [-1244.789] (-1277.373) -- 0:01:01
838000 -- (-1306.466) (-1289.055) [-1246.017] (-1260.427) * [-1255.883] (-1300.113) (-1249.188) (-1290.782) -- 0:01:01
839000 -- (-1296.586) (-1305.995) [-1249.758] (-1262.411) * (-1259.018) (-1291.728) [-1248.418] (-1278.881) -- 0:01:01
840000 -- (-1294.060) (-1286.937) (-1257.555) [-1251.527] * (-1260.674) (-1300.781) [-1260.084] (-1277.689) -- 0:01:00
Average standard deviation of split frequencies: 0.009918
841000 -- (-1291.332) (-1293.511) [-1245.983] (-1255.447) * (-1246.707) (-1292.366) [-1250.809] (-1293.380) -- 0:01:00
842000 -- (-1301.808) (-1315.924) [-1249.303] (-1250.948) * (-1256.915) (-1289.888) [-1245.171] (-1286.177) -- 0:01:00
843000 -- (-1295.103) (-1291.481) (-1248.484) [-1257.510] * [-1245.312] (-1306.738) (-1254.653) (-1279.542) -- 0:00:59
844000 -- (-1302.881) (-1293.241) [-1248.181] (-1247.210) * [-1251.826] (-1294.738) (-1255.942) (-1299.601) -- 0:00:59
845000 -- (-1305.688) (-1295.050) [-1251.004] (-1251.375) * (-1247.758) (-1314.208) [-1241.813] (-1294.819) -- 0:00:58
Average standard deviation of split frequencies: 0.009793
846000 -- (-1304.190) (-1293.089) (-1254.036) [-1248.686] * (-1261.258) (-1285.827) [-1248.017] (-1282.784) -- 0:00:58
847000 -- (-1305.109) (-1287.574) (-1259.089) [-1252.244] * [-1254.888] (-1285.617) (-1253.645) (-1295.275) -- 0:00:58
848000 -- (-1297.198) (-1285.974) (-1255.843) [-1266.593] * [-1255.950] (-1288.022) (-1257.147) (-1301.832) -- 0:00:57
849000 -- (-1299.767) (-1297.640) [-1250.186] (-1242.914) * [-1251.164] (-1284.902) (-1254.682) (-1278.020) -- 0:00:57
850000 -- (-1285.304) (-1300.275) [-1245.996] (-1255.061) * [-1253.027] (-1300.636) (-1261.323) (-1277.116) -- 0:00:57
Average standard deviation of split frequencies: 0.009638
851000 -- (-1295.993) (-1299.121) (-1255.524) [-1252.439] * (-1259.742) (-1301.913) [-1249.180] (-1277.632) -- 0:00:56
852000 -- (-1305.079) (-1289.586) (-1259.388) [-1250.280] * (-1253.680) (-1296.991) [-1250.158] (-1289.472) -- 0:00:56
853000 -- (-1312.267) (-1305.093) (-1259.437) [-1247.181] * [-1247.832] (-1301.113) (-1248.249) (-1284.949) -- 0:00:55
854000 -- (-1300.323) (-1304.917) (-1253.536) [-1249.736] * (-1260.898) (-1298.849) [-1255.050] (-1289.166) -- 0:00:55
855000 -- (-1301.520) (-1297.956) [-1264.420] (-1249.900) * (-1251.241) (-1297.255) [-1250.424] (-1291.524) -- 0:00:55
Average standard deviation of split frequencies: 0.009852
856000 -- (-1290.472) (-1305.050) [-1246.816] (-1247.694) * (-1254.951) (-1291.271) [-1251.729] (-1275.601) -- 0:00:54
857000 -- (-1298.549) (-1308.160) [-1251.012] (-1249.363) * (-1254.967) (-1299.782) [-1255.350] (-1281.636) -- 0:00:54
858000 -- (-1292.250) (-1302.090) (-1247.340) [-1247.624] * [-1245.860] (-1288.861) (-1265.681) (-1293.118) -- 0:00:53
859000 -- (-1293.010) (-1290.064) (-1249.452) [-1248.873] * (-1251.324) (-1298.788) [-1261.596] (-1293.055) -- 0:00:53
860000 -- (-1291.946) (-1298.464) (-1255.116) [-1257.600] * (-1251.544) (-1300.544) [-1248.852] (-1287.436) -- 0:00:53
Average standard deviation of split frequencies: 0.009482
861000 -- (-1308.083) (-1304.380) (-1256.723) [-1241.745] * [-1246.201] (-1285.133) (-1255.768) (-1275.147) -- 0:00:52
862000 -- (-1297.428) (-1288.034) [-1247.493] (-1250.621) * [-1251.819] (-1292.656) (-1256.406) (-1286.466) -- 0:00:52
863000 -- (-1300.556) (-1294.201) [-1251.859] (-1249.778) * (-1262.285) (-1303.233) [-1248.765] (-1288.464) -- 0:00:52
864000 -- (-1305.409) (-1289.113) (-1257.669) [-1254.835] * (-1245.660) (-1311.643) [-1249.597] (-1281.866) -- 0:00:51
865000 -- (-1289.133) (-1299.491) (-1245.563) [-1251.653] * (-1253.062) (-1300.865) [-1251.199] (-1276.751) -- 0:00:51
Average standard deviation of split frequencies: 0.009859
866000 -- (-1296.189) (-1306.971) (-1254.251) [-1251.184] * [-1250.526] (-1290.310) (-1261.701) (-1271.668) -- 0:00:50
867000 -- (-1306.087) (-1290.667) (-1253.368) [-1255.660] * (-1248.110) (-1301.251) [-1252.618] (-1281.932) -- 0:00:50
868000 -- (-1306.835) (-1299.303) (-1254.447) [-1259.219] * (-1257.153) (-1304.980) [-1255.928] (-1297.231) -- 0:00:50
869000 -- (-1302.354) (-1299.274) (-1248.658) [-1254.776] * (-1255.201) (-1288.895) [-1256.706] (-1291.680) -- 0:00:49
870000 -- (-1313.106) (-1293.913) (-1254.885) [-1251.646] * [-1250.981] (-1307.820) (-1249.536) (-1294.458) -- 0:00:49
Average standard deviation of split frequencies: 0.010022
871000 -- (-1297.028) (-1299.562) (-1256.647) [-1251.026] * [-1257.219] (-1294.173) (-1254.439) (-1293.169) -- 0:00:49
872000 -- (-1297.394) (-1294.375) [-1259.600] (-1256.047) * (-1250.252) (-1296.607) [-1255.127] (-1279.467) -- 0:00:48
873000 -- (-1293.636) (-1310.250) [-1258.288] (-1256.651) * (-1245.470) (-1305.663) [-1256.514] (-1298.546) -- 0:00:48
874000 -- (-1298.009) (-1285.912) (-1265.902) [-1252.387] * [-1245.597] (-1289.603) (-1261.892) (-1286.413) -- 0:00:47
875000 -- (-1307.184) (-1285.915) [-1252.444] (-1244.756) * (-1253.220) (-1295.972) [-1255.575] (-1278.716) -- 0:00:47
Average standard deviation of split frequencies: 0.010017
876000 -- (-1302.859) (-1292.097) [-1246.656] (-1249.932) * (-1254.452) (-1312.081) [-1252.463] (-1283.054) -- 0:00:47
877000 -- (-1296.572) (-1297.907) (-1259.489) [-1251.215] * [-1248.661] (-1304.646) (-1253.258) (-1290.985) -- 0:00:46
878000 -- (-1305.418) (-1298.017) (-1253.476) [-1247.852] * (-1250.111) (-1318.637) [-1247.891] (-1280.315) -- 0:00:46
879000 -- (-1301.206) (-1298.179) [-1248.940] (-1246.074) * [-1244.726] (-1295.363) (-1261.570) (-1290.636) -- 0:00:45
880000 -- (-1299.864) (-1311.521) (-1250.835) [-1251.064] * [-1247.882] (-1299.610) (-1251.712) (-1303.187) -- 0:00:45
Average standard deviation of split frequencies: 0.010028
881000 -- (-1292.513) (-1305.014) [-1250.695] (-1252.457) * [-1251.860] (-1295.709) (-1261.373) (-1277.762) -- 0:00:45
882000 -- (-1295.137) (-1297.864) [-1252.141] (-1253.024) * (-1249.524) (-1298.572) [-1248.862] (-1287.280) -- 0:00:44
883000 -- (-1303.667) (-1303.487) [-1255.826] (-1257.939) * (-1249.539) (-1301.261) [-1249.395] (-1281.343) -- 0:00:44
884000 -- (-1294.020) (-1290.132) [-1250.957] (-1254.941) * [-1248.069] (-1295.289) (-1259.768) (-1280.129) -- 0:00:44
885000 -- (-1306.014) (-1305.397) (-1255.150) [-1246.629] * (-1258.105) (-1301.244) [-1262.700] (-1283.393) -- 0:00:43
Average standard deviation of split frequencies: 0.009979
886000 -- (-1291.682) (-1295.518) [-1250.866] (-1249.819) * [-1246.186] (-1299.206) (-1255.990) (-1281.597) -- 0:00:43
887000 -- (-1290.145) (-1287.958) (-1247.618) [-1248.931] * (-1246.662) (-1306.351) [-1246.827] (-1290.082) -- 0:00:43
888000 -- (-1300.570) (-1301.940) (-1254.458) [-1248.445] * (-1246.145) (-1296.055) [-1249.457] (-1284.034) -- 0:00:42
889000 -- (-1297.925) (-1289.176) [-1241.970] (-1250.793) * (-1258.946) (-1294.560) [-1248.649] (-1276.175) -- 0:00:42
890000 -- (-1296.624) (-1299.839) [-1247.737] (-1258.226) * (-1245.858) (-1308.525) [-1251.116] (-1284.168) -- 0:00:41
Average standard deviation of split frequencies: 0.009676
891000 -- (-1288.047) (-1301.344) (-1255.953) [-1260.317] * (-1250.772) (-1294.406) [-1259.696] (-1280.531) -- 0:00:41
892000 -- (-1301.779) (-1297.298) (-1257.584) [-1248.068] * [-1254.502] (-1301.646) (-1265.521) (-1296.622) -- 0:00:41
893000 -- (-1292.852) (-1291.511) (-1257.069) [-1250.161] * [-1250.012] (-1292.323) (-1259.449) (-1286.666) -- 0:00:40
894000 -- (-1300.126) (-1293.001) (-1250.222) [-1244.091] * [-1252.894] (-1291.741) (-1258.052) (-1295.508) -- 0:00:40
895000 -- (-1296.685) (-1298.456) [-1245.986] (-1249.633) * (-1250.072) (-1293.323) [-1251.098] (-1300.681) -- 0:00:40
Average standard deviation of split frequencies: 0.009961
896000 -- (-1290.033) (-1296.351) (-1253.325) [-1246.966] * (-1252.478) (-1288.306) [-1252.416] (-1288.280) -- 0:00:39
897000 -- (-1299.335) (-1295.902) (-1260.012) [-1249.751] * (-1255.105) (-1298.275) [-1251.950] (-1281.637) -- 0:00:39
898000 -- (-1294.876) (-1290.650) (-1265.041) [-1257.488] * (-1252.165) (-1287.244) [-1250.147] (-1280.474) -- 0:00:38
899000 -- (-1294.451) (-1289.884) (-1248.398) [-1247.560] * (-1255.114) (-1295.973) [-1251.105] (-1284.006) -- 0:00:38
900000 -- (-1296.278) (-1295.287) [-1251.352] (-1248.691) * (-1248.287) (-1290.732) [-1252.308] (-1290.874) -- 0:00:38
Average standard deviation of split frequencies: 0.009782
901000 -- (-1300.212) (-1303.118) (-1252.683) [-1252.298] * (-1257.075) (-1288.358) [-1247.582] (-1285.636) -- 0:00:37
902000 -- (-1310.486) (-1303.031) [-1251.008] (-1251.037) * (-1253.540) (-1297.444) [-1244.764] (-1285.525) -- 0:00:37
903000 -- (-1292.683) (-1296.552) (-1251.499) [-1252.893] * [-1258.598] (-1299.731) (-1253.629) (-1294.174) -- 0:00:36
904000 -- (-1288.891) (-1309.940) (-1259.684) [-1248.248] * (-1264.270) (-1294.167) [-1246.491] (-1283.417) -- 0:00:36
905000 -- (-1304.313) (-1307.157) (-1263.183) [-1247.710] * [-1250.344] (-1293.925) (-1246.986) (-1302.456) -- 0:00:36
Average standard deviation of split frequencies: 0.009817
906000 -- (-1302.520) (-1306.882) [-1253.720] (-1259.826) * (-1259.435) (-1300.903) [-1244.685] (-1282.114) -- 0:00:35
907000 -- (-1294.571) (-1291.668) [-1252.688] (-1250.742) * [-1259.131] (-1296.491) (-1248.260) (-1287.157) -- 0:00:35
908000 -- (-1299.679) (-1293.653) (-1249.997) [-1252.943] * (-1257.951) (-1292.349) [-1250.689] (-1295.120) -- 0:00:35
909000 -- (-1296.366) (-1287.416) (-1258.215) [-1250.802] * [-1252.692] (-1292.516) (-1253.490) (-1291.904) -- 0:00:34
910000 -- (-1302.160) (-1296.025) (-1258.987) [-1248.152] * (-1244.816) (-1285.659) [-1246.517] (-1293.368) -- 0:00:34
Average standard deviation of split frequencies: 0.009753
911000 -- (-1297.505) (-1300.795) (-1266.673) [-1249.466] * (-1245.140) (-1300.080) [-1247.623] (-1283.921) -- 0:00:33
912000 -- (-1289.545) (-1293.455) (-1258.436) [-1255.858] * (-1255.434) (-1303.795) [-1256.838] (-1288.271) -- 0:00:33
913000 -- (-1298.282) (-1294.590) (-1268.022) [-1249.640] * (-1249.222) (-1300.624) [-1246.379] (-1290.034) -- 0:00:33
914000 -- (-1302.699) (-1296.657) [-1245.176] (-1252.788) * (-1254.978) (-1293.358) [-1248.314] (-1289.744) -- 0:00:32
915000 -- (-1297.295) (-1303.543) (-1250.590) [-1251.648] * [-1248.122] (-1295.679) (-1247.695) (-1279.445) -- 0:00:32
Average standard deviation of split frequencies: 0.009504
916000 -- (-1289.525) (-1300.812) (-1248.476) [-1249.814] * [-1250.234] (-1303.400) (-1252.038) (-1290.943) -- 0:00:32
917000 -- (-1298.040) (-1289.803) [-1248.107] (-1247.867) * (-1249.824) (-1299.822) [-1249.985] (-1291.043) -- 0:00:31
918000 -- (-1299.802) (-1293.640) (-1256.152) [-1251.314] * [-1253.799] (-1294.810) (-1256.424) (-1294.836) -- 0:00:31
919000 -- (-1301.234) (-1298.128) [-1252.142] (-1260.282) * [-1248.908] (-1304.424) (-1243.216) (-1302.290) -- 0:00:30
920000 -- (-1297.160) (-1296.234) (-1252.300) [-1251.625] * (-1247.500) (-1310.236) [-1258.749] (-1276.704) -- 0:00:30
Average standard deviation of split frequencies: 0.009467
921000 -- (-1301.477) (-1309.481) [-1245.989] (-1256.033) * [-1246.367] (-1296.205) (-1256.790) (-1283.471) -- 0:00:30
922000 -- (-1299.746) (-1295.147) (-1248.675) [-1247.437] * [-1250.918] (-1302.343) (-1256.724) (-1288.247) -- 0:00:29
923000 -- (-1303.929) (-1306.745) (-1257.001) [-1250.020] * (-1249.997) (-1306.389) [-1246.744] (-1288.783) -- 0:00:29
924000 -- (-1300.444) (-1300.191) [-1258.947] (-1258.427) * (-1250.984) (-1304.420) [-1245.099] (-1275.202) -- 0:00:28
925000 -- (-1294.590) (-1289.024) (-1255.784) [-1252.140] * (-1250.235) (-1288.278) [-1253.551] (-1288.399) -- 0:00:28
Average standard deviation of split frequencies: 0.009548
926000 -- (-1309.463) (-1293.987) (-1261.186) [-1244.287] * (-1248.361) (-1301.786) [-1247.622] (-1282.266) -- 0:00:28
927000 -- (-1319.380) (-1300.609) [-1251.332] (-1266.532) * [-1255.890] (-1287.760) (-1246.966) (-1284.239) -- 0:00:27
928000 -- (-1308.882) (-1308.131) (-1256.072) [-1252.211] * (-1259.744) (-1288.139) [-1254.292] (-1290.013) -- 0:00:27
929000 -- (-1306.186) (-1294.304) (-1254.003) [-1250.792] * [-1251.344] (-1297.570) (-1253.168) (-1292.005) -- 0:00:26
930000 -- (-1326.228) (-1294.045) (-1247.633) [-1246.821] * [-1253.172] (-1302.375) (-1244.288) (-1286.710) -- 0:00:26
Average standard deviation of split frequencies: 0.009399
931000 -- (-1311.074) (-1292.324) (-1256.230) [-1241.812] * (-1248.531) (-1296.042) [-1255.597] (-1285.484) -- 0:00:26
932000 -- (-1298.079) (-1292.215) (-1262.104) [-1254.991] * [-1251.140] (-1297.511) (-1255.219) (-1291.087) -- 0:00:25
933000 -- (-1296.189) (-1292.495) (-1258.123) [-1262.616] * [-1245.310] (-1303.560) (-1255.181) (-1290.607) -- 0:00:25
934000 -- (-1293.790) (-1293.742) [-1251.251] (-1248.683) * (-1255.137) (-1291.852) [-1251.828] (-1282.423) -- 0:00:25
935000 -- (-1304.036) (-1298.185) [-1248.908] (-1254.274) * (-1243.315) (-1291.949) [-1246.240] (-1286.721) -- 0:00:24
Average standard deviation of split frequencies: 0.009339
936000 -- (-1304.429) (-1298.460) [-1251.694] (-1248.752) * [-1247.612] (-1305.233) (-1246.780) (-1286.504) -- 0:00:24
937000 -- (-1306.268) (-1297.236) (-1247.260) [-1255.842] * [-1247.119] (-1291.495) (-1255.925) (-1276.863) -- 0:00:24
938000 -- (-1298.610) (-1304.454) [-1257.114] (-1248.966) * [-1247.022] (-1303.546) (-1255.820) (-1278.609) -- 0:00:23
939000 -- (-1307.665) (-1304.839) [-1248.430] (-1254.783) * (-1251.049) (-1295.808) [-1250.212] (-1280.519) -- 0:00:23
940000 -- (-1289.084) (-1295.297) [-1249.302] (-1252.251) * (-1249.865) (-1285.138) [-1249.546] (-1291.123) -- 0:00:22
Average standard deviation of split frequencies: 0.009162
941000 -- (-1304.761) (-1292.256) (-1251.226) [-1248.292] * (-1248.108) (-1297.096) [-1262.039] (-1298.861) -- 0:00:22
942000 -- (-1309.733) (-1304.559) [-1258.090] (-1254.228) * [-1251.557] (-1282.919) (-1250.124) (-1286.407) -- 0:00:22
943000 -- (-1298.064) (-1301.955) [-1251.338] (-1255.846) * (-1248.287) (-1291.623) [-1252.219] (-1286.814) -- 0:00:21
944000 -- (-1295.624) (-1304.106) [-1249.390] (-1260.097) * (-1246.933) (-1288.733) [-1247.012] (-1285.499) -- 0:00:21
945000 -- (-1297.108) (-1311.072) [-1243.659] (-1254.802) * (-1250.665) (-1296.104) [-1246.248] (-1289.530) -- 0:00:20
Average standard deviation of split frequencies: 0.009240
946000 -- (-1315.658) (-1289.764) [-1242.670] (-1255.903) * (-1248.594) (-1294.142) [-1244.213] (-1294.150) -- 0:00:20
947000 -- (-1310.165) (-1299.548) [-1257.658] (-1250.310) * [-1245.966] (-1292.210) (-1253.625) (-1289.812) -- 0:00:20
948000 -- (-1297.780) (-1299.975) (-1252.940) [-1250.210] * (-1256.128) (-1291.172) [-1252.352] (-1280.640) -- 0:00:19
949000 -- (-1297.585) (-1296.001) [-1247.260] (-1254.017) * (-1260.122) (-1294.842) [-1248.676] (-1283.236) -- 0:00:19
950000 -- (-1289.037) (-1297.988) (-1251.532) [-1260.562] * [-1251.069] (-1304.321) (-1258.830) (-1287.807) -- 0:00:19
Average standard deviation of split frequencies: 0.009066
951000 -- (-1292.728) (-1296.456) [-1242.288] (-1249.040) * (-1253.478) (-1311.550) [-1246.803] (-1290.078) -- 0:00:18
952000 -- (-1298.738) (-1288.047) (-1256.718) [-1258.989] * [-1250.513] (-1301.026) (-1250.960) (-1271.167) -- 0:00:18
953000 -- (-1297.120) (-1300.797) (-1248.369) [-1243.866] * (-1251.759) (-1298.386) [-1250.337] (-1292.887) -- 0:00:17
954000 -- (-1307.464) (-1298.496) [-1252.707] (-1264.459) * [-1249.314] (-1295.718) (-1248.928) (-1289.697) -- 0:00:17
955000 -- (-1300.249) (-1297.841) [-1256.003] (-1245.596) * (-1251.393) (-1296.025) [-1245.944] (-1293.711) -- 0:00:17
Average standard deviation of split frequencies: 0.008951
956000 -- (-1311.073) (-1292.680) [-1252.443] (-1249.621) * [-1254.415] (-1307.914) (-1250.914) (-1285.338) -- 0:00:16
957000 -- (-1298.040) (-1291.550) [-1258.206] (-1253.110) * [-1245.445] (-1307.024) (-1260.453) (-1282.658) -- 0:00:16
958000 -- (-1301.412) (-1290.659) [-1250.788] (-1258.456) * (-1251.860) (-1290.135) [-1247.575] (-1277.272) -- 0:00:16
959000 -- (-1303.646) (-1296.119) [-1256.693] (-1256.908) * (-1252.982) (-1282.998) [-1246.981] (-1290.775) -- 0:00:15
960000 -- (-1300.176) (-1309.380) [-1252.904] (-1253.117) * (-1257.003) (-1287.759) [-1247.389] (-1295.046) -- 0:00:15
Average standard deviation of split frequencies: 0.008886
961000 -- (-1296.655) (-1291.238) [-1254.009] (-1252.695) * (-1256.893) (-1285.252) [-1243.352] (-1291.596) -- 0:00:14
962000 -- (-1293.107) (-1287.214) [-1250.558] (-1254.273) * [-1254.804] (-1293.195) (-1257.138) (-1298.501) -- 0:00:14
963000 -- (-1297.408) (-1292.104) [-1252.588] (-1260.590) * (-1255.620) (-1305.867) [-1256.627] (-1293.319) -- 0:00:14
964000 -- (-1293.712) (-1302.521) [-1247.942] (-1255.845) * (-1252.326) (-1303.022) [-1250.450] (-1270.253) -- 0:00:13
965000 -- (-1298.948) (-1296.544) (-1239.108) [-1250.261] * (-1253.991) (-1288.415) [-1249.740] (-1284.036) -- 0:00:13
Average standard deviation of split frequencies: 0.008763
966000 -- (-1300.831) (-1299.983) (-1254.840) [-1250.360] * [-1244.647] (-1298.892) (-1252.948) (-1289.988) -- 0:00:12
967000 -- (-1305.241) (-1291.187) [-1250.244] (-1254.622) * (-1249.179) (-1291.874) [-1248.452] (-1283.455) -- 0:00:12
968000 -- (-1306.023) (-1294.841) [-1252.244] (-1258.166) * (-1247.159) (-1292.901) [-1254.281] (-1278.161) -- 0:00:12
969000 -- (-1305.126) (-1292.838) [-1244.086] (-1259.067) * (-1273.405) (-1296.076) [-1245.558] (-1291.144) -- 0:00:11
970000 -- (-1295.941) (-1306.300) [-1252.584] (-1255.665) * (-1252.194) (-1294.048) [-1248.452] (-1287.570) -- 0:00:11
Average standard deviation of split frequencies: 0.008742
971000 -- (-1300.123) (-1295.698) (-1250.106) [-1249.486] * [-1249.658] (-1284.792) (-1250.686) (-1281.748) -- 0:00:11
972000 -- (-1306.647) (-1303.529) [-1246.234] (-1252.274) * (-1250.253) (-1292.990) [-1253.930] (-1289.211) -- 0:00:10
973000 -- (-1310.786) (-1283.897) (-1252.716) [-1253.247] * [-1251.482] (-1309.061) (-1259.921) (-1291.231) -- 0:00:10
974000 -- (-1293.380) (-1286.071) (-1253.598) [-1253.658] * [-1248.842] (-1291.145) (-1247.352) (-1289.097) -- 0:00:09
975000 -- (-1305.079) (-1308.105) [-1253.450] (-1258.394) * [-1245.106] (-1294.646) (-1272.962) (-1284.565) -- 0:00:09
Average standard deviation of split frequencies: 0.008630
976000 -- (-1305.562) (-1303.493) [-1249.403] (-1243.849) * (-1244.258) (-1302.199) [-1260.091] (-1286.315) -- 0:00:09
977000 -- (-1292.712) (-1301.771) (-1250.928) [-1258.343] * (-1249.678) (-1303.279) [-1248.579] (-1292.672) -- 0:00:08
978000 -- (-1299.194) (-1296.037) (-1252.102) [-1249.496] * [-1248.231] (-1305.101) (-1262.688) (-1294.060) -- 0:00:08
979000 -- (-1296.355) (-1295.956) (-1249.304) [-1250.059] * [-1252.988] (-1301.454) (-1252.304) (-1289.720) -- 0:00:08
980000 -- (-1305.676) (-1297.161) [-1246.791] (-1247.835) * (-1250.195) (-1297.454) [-1254.049] (-1281.720) -- 0:00:07
Average standard deviation of split frequencies: 0.008524
981000 -- (-1310.141) (-1289.693) [-1245.411] (-1250.547) * (-1253.697) (-1289.222) [-1247.133] (-1282.003) -- 0:00:07
982000 -- (-1302.005) (-1291.198) (-1254.757) [-1246.517] * [-1245.519] (-1301.254) (-1254.983) (-1287.814) -- 0:00:06
983000 -- (-1311.801) (-1300.535) [-1249.702] (-1252.748) * (-1252.212) (-1290.137) [-1250.266] (-1291.973) -- 0:00:06
984000 -- (-1312.477) (-1297.981) (-1257.028) [-1246.231] * (-1253.255) (-1291.227) [-1248.456] (-1282.487) -- 0:00:06
985000 -- (-1305.240) (-1300.826) [-1249.960] (-1257.444) * [-1247.794] (-1291.382) (-1243.667) (-1284.962) -- 0:00:05
Average standard deviation of split frequencies: 0.008252
986000 -- (-1302.472) (-1291.321) [-1251.542] (-1256.985) * (-1253.301) (-1290.401) [-1252.479] (-1280.473) -- 0:00:05
987000 -- (-1300.246) (-1291.214) (-1259.111) [-1245.196] * (-1249.839) (-1291.616) [-1252.474] (-1277.110) -- 0:00:04
988000 -- (-1296.202) (-1310.203) (-1250.630) [-1243.416] * [-1251.090] (-1291.710) (-1248.241) (-1291.803) -- 0:00:04
989000 -- (-1305.352) (-1295.351) [-1248.708] (-1249.206) * [-1248.412] (-1295.935) (-1244.402) (-1289.616) -- 0:00:04
990000 -- (-1300.371) (-1300.008) (-1252.062) [-1247.706] * (-1259.716) (-1294.526) [-1245.630] (-1297.593) -- 0:00:03
Average standard deviation of split frequencies: 0.008470
991000 -- (-1300.265) (-1295.284) (-1254.732) [-1251.020] * (-1256.630) (-1291.836) [-1253.230] (-1286.964) -- 0:00:03
992000 -- (-1293.300) (-1295.592) (-1258.585) [-1247.576] * [-1249.015] (-1322.258) (-1255.390) (-1288.426) -- 0:00:03
993000 -- (-1314.916) (-1295.107) [-1255.201] (-1257.528) * [-1253.125] (-1299.680) (-1254.689) (-1282.143) -- 0:00:02
994000 -- (-1290.141) (-1295.642) (-1259.771) [-1253.417] * [-1250.314] (-1304.520) (-1251.260) (-1288.815) -- 0:00:02
995000 -- (-1303.768) (-1294.504) (-1253.495) [-1252.057] * (-1250.800) (-1299.921) [-1244.087] (-1297.389) -- 0:00:01
Average standard deviation of split frequencies: 0.008351
996000 -- (-1293.758) (-1290.382) [-1245.428] (-1253.792) * [-1256.792] (-1292.921) (-1249.677) (-1293.716) -- 0:00:01
997000 -- (-1297.874) (-1299.252) (-1252.662) [-1249.208] * (-1242.630) (-1297.534) [-1250.529] (-1308.754) -- 0:00:01
998000 -- (-1298.026) (-1292.149) [-1255.054] (-1254.425) * [-1247.971] (-1298.081) (-1253.492) (-1288.369) -- 0:00:00
999000 -- (-1293.112) (-1295.484) (-1257.650) [-1250.606] * [-1252.541] (-1292.711) (-1251.013) (-1296.519) -- 0:00:00
1000000 -- (-1302.544) (-1294.725) [-1260.310] (-1255.970) * (-1245.383) (-1300.502) [-1253.826] (-1283.114) -- 0:00:00
Average standard deviation of split frequencies: 0.008134
Analysis completed in 6 mins 20 seconds
Analysis used 380.28 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -1236.34
Likelihood of best state for "cold" chain of run 2 was -1236.13
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
68.1 % ( 68 %) Dirichlet(Revmat{all})
85.4 % ( 82 %) Slider(Revmat{all})
26.5 % ( 30 %) Dirichlet(Pi{all})
28.8 % ( 26 %) Slider(Pi{all})
82.9 % ( 61 %) Multiplier(Alpha{1,2})
73.3 % ( 46 %) Multiplier(Alpha{3})
87.7 % ( 69 %) Slider(Pinvar{all})
60.4 % ( 59 %) ExtSPR(Tau{all},V{all})
51.8 % ( 55 %) ExtTBR(Tau{all},V{all})
69.7 % ( 75 %) NNI(Tau{all},V{all})
38.7 % ( 37 %) ParsSPR(Tau{all},V{all})
27.6 % ( 28 %) Multiplier(V{all})
77.2 % ( 75 %) Nodeslider(V{all})
26.9 % ( 16 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
68.1 % ( 65 %) Dirichlet(Revmat{all})
85.2 % ( 76 %) Slider(Revmat{all})
27.0 % ( 21 %) Dirichlet(Pi{all})
28.9 % ( 31 %) Slider(Pi{all})
82.4 % ( 65 %) Multiplier(Alpha{1,2})
72.6 % ( 47 %) Multiplier(Alpha{3})
86.1 % ( 76 %) Slider(Pinvar{all})
60.8 % ( 66 %) ExtSPR(Tau{all},V{all})
52.0 % ( 57 %) ExtTBR(Tau{all},V{all})
69.5 % ( 73 %) NNI(Tau{all},V{all})
38.9 % ( 41 %) ParsSPR(Tau{all},V{all})
27.7 % ( 29 %) Multiplier(V{all})
77.2 % ( 79 %) Nodeslider(V{all})
27.2 % ( 20 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.40 0.02 0.00
2 | 166643 0.09 0.00
3 | 166496 167259 0.29
4 | 166439 166687 166476
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.40 0.00 0.00
2 | 166848 0.01 0.00
3 | 166337 166653 0.31
4 | 166893 166828 166441
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -1247.78
| 1 2 21 |
| 1 2 |
|2 2 1 2 |
| 2 2 21 2 2 1 1 1 1 |
| 1 2 * 221 * 11 2 * 1 2 |
| 1 1 1 21 2 1 *2 21 2|
| 2 2 1 21 1 1 2 1 1 12 |
| 2 11 2 2 22 1 2 2 2 21 2 ** 2 1|
|1* *1 1 2 1 2 1 1 2 2 |
| 2 2 1 1 1 * 11 122 1 |
| 2 1 1 |
| 2 2 2 |
| 1 2 1 1 |
| 1 |
| 2 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -1253.74
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1245.09 -1262.36
2 -1244.65 -1264.30
--------------------------------------
TOTAL -1244.84 -1263.74
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.030732 0.000050 0.018454 0.045844 0.030110 1201.96 1287.90 1.000
r(A<->C){all} 0.057318 0.002968 0.000099 0.168631 0.040671 223.82 255.03 1.000
r(A<->G){all} 0.315890 0.007947 0.140527 0.481337 0.311583 279.29 287.16 1.000
r(A<->T){all} 0.100707 0.002260 0.023162 0.195861 0.093045 357.29 377.40 1.002
r(C<->G){all} 0.058094 0.002829 0.000112 0.164934 0.042517 217.92 237.55 1.002
r(C<->T){all} 0.399493 0.009361 0.212513 0.576424 0.394017 250.55 270.01 1.001
r(G<->T){all} 0.068499 0.001500 0.008707 0.145823 0.061764 379.90 430.13 1.001
pi(A){all} 0.240680 0.000215 0.211198 0.268821 0.240145 992.25 1051.35 1.000
pi(C){all} 0.118561 0.000115 0.097590 0.139653 0.118070 1032.60 1051.76 1.000
pi(G){all} 0.179613 0.000169 0.154288 0.204536 0.179884 1103.89 1108.01 1.000
pi(T){all} 0.461146 0.000283 0.428555 0.493103 0.461157 983.22 987.20 1.000
alpha{1,2} 0.448037 0.399503 0.000653 1.632841 0.214891 904.78 923.38 1.001
alpha{3} 1.480502 1.334148 0.003359 3.689984 1.189478 1013.64 1140.40 1.005
pinvar{all} 0.551921 0.052222 0.080379 0.887493 0.595825 460.25 540.65 1.010
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C1
2 -- C10
3 -- C11
4 -- C12
5 -- C13
6 -- C14
7 -- C15
8 -- C16
9 -- C17
10 -- C18
11 -- C19
12 -- C2
13 -- C20
14 -- C21
15 -- C22
16 -- C23
17 -- C24
18 -- C25
19 -- C26
20 -- C3
21 -- C4
22 -- C5
23 -- C6
24 -- C7
25 -- C8
26 -- C9
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
--------------------------------
1 -- .*************************
2 -- .*........................
3 -- ..*.......................
4 -- ...*......................
5 -- ....*.....................
6 -- .....*....................
7 -- ......*...................
8 -- .......*..................
9 -- ........*.................
10 -- .........*................
11 -- ..........*...............
12 -- ...........*..............
13 -- ............*.............
14 -- .............*............
15 -- ..............*...........
16 -- ...............*..........
17 -- ................*.........
18 -- .................*........
19 -- ..................*.......
20 -- ...................*......
21 -- ....................*.....
22 -- .....................*....
23 -- ......................*...
24 -- .......................*..
25 -- ........................*.
26 -- .........................*
27 -- .......*..*.*******.......
28 -- ...**.*..*.*...........**.
29 -- ..*..*...............*....
30 -- .*.......................*
31 -- ...............**.........
32 -- ..*..*..*............*....
33 -- ............*******.......
34 -- .......*....*******.......
35 -- ..*..................*....
36 -- ..*..*....................
37 -- .....*...............*....
38 -- .......*..*...............
39 -- ..........*.*******.......
40 -- ............*.....*.......
41 -- ............**.****.......
42 -- ............*....*........
43 -- ...............***........
44 -- ............*****.*.......
45 -- .............*.**.........
46 -- ............*.*****.......
47 -- ............*..**.........
48 -- ..............*...*.......
49 -- ............**............
50 -- ...............**.*.......
51 -- .............*...*........
52 -- ..............*..*........
53 -- ............******........
54 -- .............**...........
55 -- ..............***.........
56 -- .................**.......
57 -- ...*....................*.
58 -- ............*.*...........
59 -- .............*....*.......
60 -- .............******.......
61 -- .......*..*.*******...*...
62 -- .......*..*.*******.*.....
63 -- ......*................*..
64 -- ............***..**.......
65 -- .*..................*....*
66 -- ....*.*...................
67 -- ...**.*..*.*.......*...**.
68 -- ....*......*..............
69 -- ...**....*.*...........**.
70 -- ...**.*..*.*........*..**.
71 -- ...................**.....
--------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
27 3002 1.000000 0.000000 1.000000 1.000000 2
28 2999 0.999001 0.001413 0.998001 1.000000 2
29 2994 0.997335 0.001884 0.996003 0.998668 2
30 2930 0.976016 0.008480 0.970020 0.982012 2
31 2905 0.967688 0.004240 0.964690 0.970686 2
32 2897 0.965023 0.005182 0.961359 0.968688 2
33 2869 0.955696 0.013662 0.946036 0.965356 2
34 1125 0.374750 0.019315 0.361093 0.388408 2
35 1016 0.338441 0.000942 0.337775 0.339107 2
36 999 0.332778 0.012719 0.323784 0.341772 2
37 985 0.328115 0.011777 0.319787 0.336442 2
38 944 0.314457 0.002827 0.312458 0.316456 2
39 920 0.306462 0.020728 0.291805 0.321119 2
40 347 0.115590 0.001413 0.114590 0.116589 2
41 345 0.114923 0.003298 0.112592 0.117255 2
42 341 0.113591 0.007066 0.108594 0.118588 2
43 338 0.112592 0.016959 0.100600 0.124584 2
44 335 0.111592 0.001413 0.110593 0.112592 2
45 334 0.111259 0.000942 0.110593 0.111925 2
46 326 0.108594 0.002827 0.106596 0.110593 2
47 324 0.107928 0.015075 0.097268 0.118588 2
48 323 0.107595 0.009893 0.100600 0.114590 2
49 323 0.107595 0.012719 0.098601 0.116589 2
50 321 0.106929 0.011777 0.098601 0.115256 2
51 321 0.106929 0.009893 0.099933 0.113924 2
52 318 0.105929 0.000000 0.105929 0.105929 2
53 317 0.105596 0.003298 0.103264 0.107928 2
54 313 0.104264 0.016488 0.092605 0.115923 2
55 313 0.104264 0.003298 0.101932 0.106596 2
56 311 0.103598 0.003298 0.101266 0.105929 2
57 308 0.102598 0.000942 0.101932 0.103264 2
58 307 0.102265 0.007066 0.097268 0.107262 2
59 307 0.102265 0.017430 0.089940 0.114590 2
60 307 0.102265 0.001413 0.101266 0.103264 2
61 295 0.098268 0.007066 0.093271 0.103264 2
62 295 0.098268 0.009893 0.091272 0.105263 2
63 291 0.096935 0.009893 0.089940 0.103931 2
64 291 0.096935 0.005182 0.093271 0.100600 2
65 291 0.096935 0.013662 0.087275 0.106596 2
66 291 0.096935 0.007066 0.091939 0.101932 2
67 286 0.095270 0.009422 0.088608 0.101932 2
68 286 0.095270 0.016017 0.083944 0.106596 2
69 283 0.094270 0.008951 0.087941 0.100600 2
70 281 0.093604 0.012719 0.084610 0.102598 2
71 277 0.092272 0.016488 0.080613 0.103931 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.000425 0.000000 0.000000 0.001305 0.000274 1.000 2
length{all}[2] 0.000433 0.000000 0.000000 0.001345 0.000290 1.000 2
length{all}[3] 0.000430 0.000000 0.000000 0.001344 0.000291 1.000 2
length{all}[4] 0.001284 0.000001 0.000131 0.002799 0.001116 1.000 2
length{all}[5] 0.000870 0.000000 0.000030 0.002226 0.000707 1.000 2
length{all}[6] 0.000852 0.000000 0.000003 0.002161 0.000693 1.000 2
length{all}[7] 0.000435 0.000000 0.000000 0.001338 0.000292 1.003 2
length{all}[8] 0.000435 0.000000 0.000000 0.001355 0.000284 1.000 2
length{all}[9] 0.000439 0.000000 0.000000 0.001348 0.000296 1.002 2
length{all}[10] 0.000435 0.000000 0.000000 0.001310 0.000289 1.000 2
length{all}[11] 0.002160 0.000001 0.000375 0.004086 0.001989 1.000 2
length{all}[12] 0.000437 0.000000 0.000001 0.001367 0.000292 1.000 2
length{all}[13] 0.000835 0.000000 0.000008 0.002068 0.000681 1.000 2
length{all}[14] 0.000851 0.000000 0.000036 0.002173 0.000676 1.000 2
length{all}[15] 0.000416 0.000000 0.000000 0.001278 0.000286 1.000 2
length{all}[16] 0.000438 0.000000 0.000000 0.001318 0.000302 1.000 2
length{all}[17] 0.000445 0.000000 0.000000 0.001396 0.000304 1.000 2
length{all}[18] 0.000416 0.000000 0.000000 0.001241 0.000291 1.000 2
length{all}[19] 0.000420 0.000000 0.000000 0.001270 0.000283 1.000 2
length{all}[20] 0.000419 0.000000 0.000000 0.001288 0.000291 1.000 2
length{all}[21] 0.000831 0.000000 0.000024 0.002024 0.000691 1.000 2
length{all}[22] 0.000435 0.000000 0.000000 0.001398 0.000290 1.000 2
length{all}[23] 0.000422 0.000000 0.000000 0.001310 0.000281 1.000 2
length{all}[24] 0.000437 0.000000 0.000000 0.001389 0.000288 1.000 2
length{all}[25] 0.000429 0.000000 0.000000 0.001242 0.000304 1.000 2
length{all}[26] 0.000430 0.000000 0.000000 0.001289 0.000292 1.000 2
length{all}[27] 0.002519 0.000001 0.000678 0.004798 0.002332 1.000 2
length{all}[28] 0.001290 0.000001 0.000089 0.002891 0.001113 1.000 2
length{all}[29] 0.000866 0.000000 0.000024 0.002075 0.000703 1.000 2
length{all}[30] 0.000834 0.000000 0.000008 0.002075 0.000689 1.000 2
length{all}[31] 0.000829 0.000000 0.000006 0.002071 0.000658 1.000 2
length{all}[32] 0.000862 0.000000 0.000010 0.002116 0.000696 1.000 2
length{all}[33] 0.000837 0.000000 0.000022 0.002057 0.000684 1.000 2
length{all}[34] 0.000503 0.000000 0.000000 0.001493 0.000349 1.000 2
length{all}[35] 0.000415 0.000000 0.000001 0.001309 0.000268 0.999 2
length{all}[36] 0.000429 0.000000 0.000000 0.001291 0.000279 1.002 2
length{all}[37] 0.000424 0.000000 0.000000 0.001254 0.000302 0.999 2
length{all}[38] 0.000466 0.000000 0.000000 0.001331 0.000324 0.999 2
length{all}[39] 0.000442 0.000000 0.000001 0.001260 0.000303 1.000 2
length{all}[40] 0.000429 0.000000 0.000000 0.001354 0.000283 0.997 2
length{all}[41] 0.000437 0.000000 0.000003 0.001287 0.000296 1.006 2
length{all}[42] 0.000453 0.000000 0.000000 0.001325 0.000310 0.998 2
length{all}[43] 0.000419 0.000000 0.000000 0.001205 0.000288 1.005 2
length{all}[44] 0.000417 0.000000 0.000001 0.001274 0.000265 0.997 2
length{all}[45] 0.000393 0.000000 0.000001 0.001269 0.000254 0.997 2
length{all}[46] 0.000412 0.000000 0.000000 0.001226 0.000290 0.998 2
length{all}[47] 0.000420 0.000000 0.000000 0.001269 0.000273 0.997 2
length{all}[48] 0.000476 0.000000 0.000001 0.001393 0.000332 0.997 2
length{all}[49] 0.000435 0.000000 0.000001 0.001297 0.000302 1.001 2
length{all}[50] 0.000390 0.000000 0.000000 0.001146 0.000276 0.997 2
length{all}[51] 0.000449 0.000000 0.000003 0.001256 0.000295 1.000 2
length{all}[52] 0.000465 0.000000 0.000003 0.001307 0.000331 0.997 2
length{all}[53] 0.000442 0.000000 0.000002 0.001284 0.000297 0.997 2
length{all}[54] 0.000386 0.000000 0.000001 0.001225 0.000254 0.998 2
length{all}[55] 0.000412 0.000000 0.000005 0.001362 0.000276 0.997 2
length{all}[56] 0.000439 0.000000 0.000002 0.001253 0.000316 0.997 2
length{all}[57] 0.000459 0.000000 0.000002 0.001331 0.000337 0.997 2
length{all}[58] 0.000469 0.000000 0.000000 0.001507 0.000296 0.999 2
length{all}[59] 0.000404 0.000000 0.000000 0.001105 0.000283 1.015 2
length{all}[60] 0.000430 0.000000 0.000001 0.001368 0.000269 0.999 2
length{all}[61] 0.000480 0.000000 0.000002 0.001546 0.000318 1.040 2
length{all}[62] 0.000408 0.000000 0.000001 0.001134 0.000251 1.000 2
length{all}[63] 0.000438 0.000000 0.000000 0.001298 0.000281 0.997 2
length{all}[64] 0.000435 0.000000 0.000000 0.001301 0.000295 0.997 2
length{all}[65] 0.000391 0.000000 0.000000 0.001173 0.000263 1.000 2
length{all}[66] 0.000378 0.000000 0.000001 0.001087 0.000279 0.998 2
length{all}[67] 0.000434 0.000000 0.000002 0.001354 0.000307 1.000 2
length{all}[68] 0.000389 0.000000 0.000004 0.001209 0.000257 1.001 2
length{all}[69] 0.000477 0.000000 0.000002 0.001323 0.000337 0.997 2
length{all}[70] 0.000466 0.000000 0.000002 0.001345 0.000318 1.001 2
length{all}[71] 0.000415 0.000000 0.000000 0.001149 0.000283 1.011 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.008134
Maximum standard deviation of split frequencies = 0.020728
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.040
Clade credibility values:
/---------------------------------------------------------------------- C1 (1)
|
|---------------------------------------------------------------------- C3 (20)
|
|---------------------------------------------------------------------- C4 (21)
|
|---------------------------------------------------------------------- C6 (23)
|
| /---------------------------------------------------- C16 (8)
| |
| |---------------------------------------------------- C19 (11)
| |
| | /----------------------------------- C20 (13)
|-------100-------+ |
| | |----------------------------------- C21 (14)
| | |
| | |----------------------------------- C22 (15)
| | |
| \-------96-------+ /----------------- C23 (16)
| |--------97-------+
| | \----------------- C24 (17)
| |
| |----------------------------------- C25 (18)
| |
+ \----------------------------------- C26 (19)
|
| /----------------- C12 (4)
| |
| |----------------- C13 (5)
| |
| |----------------- C15 (7)
| |
|-------------------------100------------------------+----------------- C18 (10)
| |
| |----------------- C2 (12)
| |
| |----------------- C7 (24)
| |
| \----------------- C8 (25)
|
| /----------------- C10 (2)
|-------------------------98-------------------------+
| \----------------- C9 (26)
|
| /----------------- C11 (3)
| |
| /-------100-------+----------------- C14 (6)
| | |
\----------------97----------------+ \----------------- C5 (22)
|
\----------------------------------- C17 (9)
Phylogram (based on average branch lengths):
/---- C1 (1)
|
|----- C3 (20)
|
|----------- C4 (21)
|
|----- C6 (23)
|
| /---- C16 (8)
| |
| |-------------------------------- C19 (11)
| |
| | /----------- C20 (13)
|-------------------------------------+ |
| | |----------- C21 (14)
| | |
| | |---- C22 (15)
| | |
| \----------+ /---- C23 (16)
| |----------+
| | \---- C24 (17)
| |
| |----- C25 (18)
| |
+ \---- C26 (19)
|
| /------------------ C12 (4)
| |
| |----------- C13 (5)
| |
| |----- C15 (7)
| |
|-----------------+----- C18 (10)
| |
| |----- C2 (12)
| |
| |----- C7 (24)
| |
| \----- C8 (25)
|
| /----- C10 (2)
|----------+
| \----- C9 (26)
|
| /---- C11 (3)
| |
| /-----------+----------- C14 (6)
| | |
\----------+ \---- C5 (22)
|
\----- C17 (9)
|---------------| 0.001 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3002 trees sampled):
50 % credible set contains 1501 trees
90 % credible set contains 2702 trees
95 % credible set contains 2852 trees
99 % credible set contains 2972 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Sat Nov 05 01:39:58 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.09 sec, SCORE=1000, Nseq=26, Len=279
C1 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C2 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C3 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C4 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C5 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C6 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C7 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C8 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C9 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C10 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C11 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C12 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C13 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C14 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C15 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C16 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C17 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C18 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C19 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C20 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C21 SGKVIFGLKTMFLFSIFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C22 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C23 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C24 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C25 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
C26 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLS
***************:**********************************
C1 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C2 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C3 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C4 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C5 LFLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C6 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C7 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C8 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C9 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C10 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C11 LFLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C12 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C13 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C14 LFLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C15 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C16 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C17 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C18 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C19 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C20 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C21 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C22 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C23 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C24 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C25 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
C26 LVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSV
*.************************************************
C1 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C2 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C3 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C4 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C5 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C6 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C7 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C8 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C9 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C10 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C11 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C12 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C13 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C14 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C15 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C16 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C17 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C18 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C19 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C20 LQMDVQGLVNVLACLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C21 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C22 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C23 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C24 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C25 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
C26 LQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYS
************.*************************************
C1 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C2 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C3 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C4 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C5 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C6 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C7 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C8 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C9 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C10 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C11 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C12 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVFFSPESVFSVFGDVKLTL
C13 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFNVFGDVKLTL
C14 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C15 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C16 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C17 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C18 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTL
C19 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLILFFSPESVFSVFGDVKLTL
C20 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C21 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C22 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C23 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C24 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C25 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
C26 GDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTL
*******************************::*******.*********
C1 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C2 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C3 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C4 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C5 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C6 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C7 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C8 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C9 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C10 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C11 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C12 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C13 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C14 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C15 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C16 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C17 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C18 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C19 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C20 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C21 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C22 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C23 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C24 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C25 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
C26 VVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHA
**************************************************
C1 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C2 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C3 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C4 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C5 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C6 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C7 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C8 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C9 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C10 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C11 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C12 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C13 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C14 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C15 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C16 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C17 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C18 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C19 PHGPFDALWLSFKLLGIGGDRCIKISTIQ
C20 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C21 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C22 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C23 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C24 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C25 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
C26 PHGPFDALWLSFKLLGIGGDRCIKISTVQ
***************************:*
-- Starting log on Sat Nov 05 04:40:01 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63.result/original_alignment/codeml,NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C1 837 sites
reading seq# 2 C2 837 sites
reading seq# 3 C3 837 sites
reading seq# 4 C4 837 sites
reading seq# 5 C5 837 sites
reading seq# 6 C6 837 sites
reading seq# 7 C7 837 sites
reading seq# 8 C8 837 sites
reading seq# 9 C9 837 sites
reading seq#10 C10 837 sites
reading seq#11 C11 837 sites
reading seq#12 C12 837 sites
reading seq#13 C13 837 sites
reading seq#14 C14 837 sites
reading seq#15 C15 837 sites
reading seq#16 C16 837 sites
reading seq#17 C17 837 sites
reading seq#18 C18 837 sites
reading seq#19 C19 837 sites
reading seq#20 C20 837 sites
reading seq#21 C21 837 sites
reading seq#22 C22 837 sites
reading seq#23 C23 837 sites
reading seq#24 C24 837 sites
reading seq#25 C25 837 sites
reading seq#26 C26 837 sitesns = 26 ls = 837
Reading sequences, sequential format..
Reading seq # 1: C1
Reading seq # 2: C2
Reading seq # 3: C3
Reading seq # 4: C4
Reading seq # 5: C5
Reading seq # 6: C6
Reading seq # 7: C7
Reading seq # 8: C8
Reading seq # 9: C9
Reading seq #10: C10
Reading seq #11: C11
Reading seq #12: C12
Reading seq #13: C13
Reading seq #14: C14
Reading seq #15: C15
Reading seq #16: C16
Reading seq #17: C17
Reading seq #18: C18
Reading seq #19: C19
Reading seq #20: C20
Reading seq #21: C21
Reading seq #22: C22
Reading seq #23: C23
Reading seq #24: C24
Reading seq #25: C25
Reading seq #26: C26
Sequences read..
Counting site patterns.. 0:00
Compressing, 65 patterns at 279 / 279 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 65 patterns at 279 / 279 sites (100.0%), 0:00
Counting codons..
2600 bytes for distance
63440 bytes for conP
5720 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(1, 3, 4, 6, (16, 19, (20, 21, 22, (23, 24), 25, 26)), (12, 13, 15, 18, 2, 7, 8), (10, 9), ((11, 14, 5), 17)); MP score: 23
253760 bytes for conP, adjusted
0.011545 0.108957 0.101423 0.034627 0.082373 0.067405 0.083925 0.031169 0.099003 0.065845 0.062603 0.075983 0.011576 0.034228 0.083120 0.058076 0.045054 0.020415 0.054310 0.030002 0.030294 0.071085 0.075296 0.015483 0.094007 0.059410 0.026967 0.084883 0.037291 0.045453 0.044991 0.022007 0.107428 0.300000 0.580850 0.382824
ntime & nrate & np: 33 2 36
Bounds (np=36):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 8.310230
np = 36
lnL0 = -1587.074321
Iterating by ming2
Initial: fx= 1587.074321
x= 0.01154 0.10896 0.10142 0.03463 0.08237 0.06740 0.08392 0.03117 0.09900 0.06584 0.06260 0.07598 0.01158 0.03423 0.08312 0.05808 0.04505 0.02041 0.05431 0.03000 0.03029 0.07108 0.07530 0.01548 0.09401 0.05941 0.02697 0.08488 0.03729 0.04545 0.04499 0.02201 0.10743 0.30000 0.58085 0.38282
1 h-m-p 0.0000 0.0001 1152.0989 ++ 1513.633654 m 0.0001 41 | 1/36
2 h-m-p 0.0000 0.0000 75544.0995 ++ 1513.359648 m 0.0000 80 | 2/36
3 h-m-p 0.0000 0.0000 4239.9924 ++ 1489.896067 m 0.0000 119 | 3/36
4 h-m-p 0.0000 0.0001 630.3248 ++ 1450.475708 m 0.0001 158 | 4/36
5 h-m-p 0.0000 0.0000 3294.6153 ++ 1426.610293 m 0.0000 197 | 5/36
6 h-m-p 0.0000 0.0000 3316.4698 ++ 1415.685289 m 0.0000 236 | 6/36
7 h-m-p 0.0000 0.0000 19048.4303 ++ 1414.609091 m 0.0000 275 | 7/36
8 h-m-p 0.0000 0.0000 660514.8392 ++ 1397.364291 m 0.0000 314 | 8/36
9 h-m-p 0.0000 0.0000 7956.4393 ++ 1396.263027 m 0.0000 353 | 9/36
10 h-m-p 0.0000 0.0000 251667.2113 ++ 1359.896067 m 0.0000 392 | 10/36
11 h-m-p 0.0000 0.0000 3421536.7808 ++ 1323.197466 m 0.0000 431 | 11/36
12 h-m-p 0.0000 0.0000 64089.4988 ++ 1321.226354 m 0.0000 470 | 12/36
13 h-m-p 0.0000 0.0000 5584.0745 ++ 1311.706201 m 0.0000 509 | 13/36
14 h-m-p 0.0000 0.0000 34924.4766 ++ 1302.017767 m 0.0000 548 | 14/36
15 h-m-p 0.0000 0.0000 7144.5230 ++ 1298.146463 m 0.0000 587 | 15/36
16 h-m-p 0.0000 0.0000 7858.8200 ++ 1291.725389 m 0.0000 626 | 16/36
17 h-m-p 0.0000 0.0000 5331.6518 ++ 1279.006380 m 0.0000 665 | 17/36
18 h-m-p 0.0000 0.0000 1978.3925 ++ 1255.803331 m 0.0000 704 | 18/36
19 h-m-p 0.0000 0.0000 1155.7540 ++ 1255.286528 m 0.0000 743 | 19/36
20 h-m-p 0.0000 0.0001 247.2436 ++ 1248.376355 m 0.0001 782 | 19/36
21 h-m-p 0.0000 0.0001 551.6483 +YYYCYCCC 1240.803841 7 0.0000 833 | 19/36
22 h-m-p 0.0000 0.0000 554.3848 +YYYYCC 1238.478397 5 0.0000 879 | 19/36
23 h-m-p 0.0000 0.0000 1066.9187 +YYYYYYYY 1234.384924 7 0.0000 926 | 19/36
24 h-m-p 0.0000 0.0000 3116.8629 YCYCCC 1233.934709 5 0.0000 973 | 19/36
25 h-m-p 0.0000 0.0000 194.9867 +YYCCCC 1233.086792 5 0.0000 1021 | 19/36
26 h-m-p 0.0000 0.0001 355.0793 +YYYCCC 1230.458141 5 0.0001 1068 | 19/36
27 h-m-p 0.0000 0.0002 81.9122 +YYCCCC 1229.687087 5 0.0001 1116 | 19/36
28 h-m-p 0.0001 0.0016 99.4944 +YCYYCCC 1220.848268 6 0.0013 1166 | 19/36
29 h-m-p 0.0003 0.0015 88.6454 +YCYCCC 1218.325559 5 0.0008 1214 | 19/36
30 h-m-p 0.0005 0.0025 38.1863 +YYYCCC 1216.604428 5 0.0018 1261 | 19/36
31 h-m-p 0.0008 0.0058 84.3816 +YYYYCCC 1213.171983 6 0.0033 1309 | 19/36
32 h-m-p 0.0010 0.0052 22.4734 +YYCYC 1211.699281 4 0.0036 1354 | 19/36
33 h-m-p 0.0015 0.0074 26.7632 +YCCCC 1210.409637 4 0.0045 1401 | 19/36
34 h-m-p 0.0242 0.1208 2.5436 ++ 1205.508173 m 0.1208 1440 | 19/36
35 h-m-p 0.0465 0.2325 0.4212 +YYCYCC 1204.002344 5 0.1634 1487 | 19/36
36 h-m-p 0.0098 0.0488 2.0769 YCYCCC 1203.251163 5 0.0253 1551 | 19/36
37 h-m-p 0.0562 0.2809 0.8419 +YYCCC 1201.207069 4 0.1912 1597 | 19/36
38 h-m-p 0.0246 0.1232 4.0835 YCCCC 1198.851994 4 0.0605 1660 | 19/36
39 h-m-p 0.0357 0.1785 0.9137 ++ 1196.458228 m 0.1785 1699 | 20/36
40 h-m-p 0.0051 0.0582 27.7357 YC 1195.806793 1 0.0128 1756 | 20/36
41 h-m-p 0.3229 1.6146 0.8029 CYCCC 1194.934683 4 0.2561 1802 | 20/36
42 h-m-p 0.7701 3.8505 0.1985 YCCCC 1193.745611 4 1.8619 1864 | 20/36
43 h-m-p 0.4293 2.1463 0.6423 CCCC 1193.461317 3 0.6583 1925 | 20/36
44 h-m-p 1.3992 6.9961 0.2504 CCC 1192.890306 2 1.7316 1984 | 20/36
45 h-m-p 1.3958 6.9791 0.1821 CCCCC 1192.618258 4 1.6827 2047 | 20/36
46 h-m-p 1.6000 8.0000 0.1523 CCCC 1192.437605 3 1.8019 2108 | 20/36
47 h-m-p 1.3047 8.0000 0.2103 CCC 1192.361327 2 1.7991 2167 | 20/36
48 h-m-p 1.6000 8.0000 0.1553 YC 1192.322132 1 2.8351 2223 | 20/36
49 h-m-p 1.6000 8.0000 0.2118 CCC 1192.269911 2 1.9945 2282 | 20/36
50 h-m-p 1.6000 8.0000 0.0868 CC 1192.250549 1 1.6148 2339 | 20/36
51 h-m-p 1.6000 8.0000 0.0347 CCC 1192.233165 2 2.0734 2398 | 20/36
52 h-m-p 1.6000 8.0000 0.0179 YCCC 1192.186809 3 3.7231 2458 | 20/36
53 h-m-p 1.6000 8.0000 0.0265 CC 1192.165749 1 1.7042 2515 | 20/36
54 h-m-p 1.6000 8.0000 0.0064 YC 1192.152964 1 2.5621 2571 | 20/36
55 h-m-p 1.1749 8.0000 0.0139 +CC 1192.128729 1 4.0277 2629 | 20/36
56 h-m-p 0.6309 8.0000 0.0886 +YC 1192.080628 1 3.8103 2686 | 20/36
57 h-m-p 1.6000 8.0000 0.1265 +YCC 1191.940196 2 5.2195 2745 | 20/36
58 h-m-p 1.6000 8.0000 0.0706 YCCC 1191.694368 3 3.7329 2805 | 20/36
59 h-m-p 1.6000 8.0000 0.0722 CCC 1191.527840 2 1.9774 2864 | 20/36
60 h-m-p 1.0670 8.0000 0.1338 +YC 1191.302569 1 3.0255 2921 | 20/36
61 h-m-p 1.6000 8.0000 0.0220 YC 1190.848422 1 3.9721 2977 | 20/36
62 h-m-p 0.4289 8.0000 0.2037 +YCCC 1190.346031 3 3.1834 3038 | 20/36
63 h-m-p 0.7792 8.0000 0.8322 YCCC 1190.013390 3 1.4972 3098 | 20/36
64 h-m-p 1.6000 8.0000 0.3760 CCCC 1189.732876 3 2.3355 3159 | 20/36
65 h-m-p 1.6000 8.0000 0.0582 YCCC 1189.525776 3 3.0674 3219 | 20/36
66 h-m-p 0.6768 8.0000 0.2639 +CCC 1189.361283 2 2.6789 3279 | 20/36
67 h-m-p 1.6000 8.0000 0.2826 C 1189.305899 0 1.6000 3334 | 20/36
68 h-m-p 1.6000 8.0000 0.0072 CY 1189.295450 1 1.6481 3391 | 20/36
69 h-m-p 0.3548 8.0000 0.0333 +C 1189.294596 0 1.3092 3447 | 20/36
70 h-m-p 1.6000 8.0000 0.0053 Y 1189.294581 0 1.1376 3502 | 20/36
71 h-m-p 1.6000 8.0000 0.0004 C 1189.294580 0 1.2984 3557 | 20/36
72 h-m-p 1.6000 8.0000 0.0001 C 1189.294580 0 1.5035 3612 | 20/36
73 h-m-p 1.6000 8.0000 0.0000 C 1189.294580 0 0.4000 3667 | 20/36
74 h-m-p 0.6477 8.0000 0.0000 Y 1189.294580 0 0.1170 3722 | 20/36
75 h-m-p 0.1461 8.0000 0.0000 ----------Y 1189.294580 0 0.0000 3787
Out..
lnL = -1189.294580
3788 lfun, 11364 eigenQcodon, 250008 P(t)
end of tree file.
Time used: 1:11
Model 2: PositiveSelection
TREE # 1
(1, 3, 4, 6, (16, 19, (20, 21, 22, (23, 24), 25, 26)), (12, 13, 15, 18, 2, 7, 8), (10, 9), ((11, 14, 5), 17)); MP score: 23
0.080628 0.042627 0.039258 0.018074 0.104218 0.044410 0.046896 0.085870 0.057280 0.107310 0.026799 0.087325 0.091756 0.010598 0.090033 0.034385 0.046917 0.051691 0.046434 0.056773 0.056198 0.075961 0.100249 0.027061 0.109395 0.032613 0.066006 0.104780 0.093676 0.061319 0.065525 0.091759 0.011838 4.340822 1.593125 0.260127 0.323530 1.407234
ntime & nrate & np: 33 3 38
Bounds (np=38):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 3.358831
np = 38
lnL0 = -1576.343715
Iterating by ming2
Initial: fx= 1576.343715
x= 0.08063 0.04263 0.03926 0.01807 0.10422 0.04441 0.04690 0.08587 0.05728 0.10731 0.02680 0.08733 0.09176 0.01060 0.09003 0.03438 0.04692 0.05169 0.04643 0.05677 0.05620 0.07596 0.10025 0.02706 0.10940 0.03261 0.06601 0.10478 0.09368 0.06132 0.06553 0.09176 0.01184 4.34082 1.59312 0.26013 0.32353 1.40723
1 h-m-p 0.0000 0.0001 1088.6832 ++ 1512.045291 m 0.0001 43 | 1/38
2 h-m-p 0.0000 0.0000 13351.1583 ++ 1505.308626 m 0.0000 84 | 2/38
3 h-m-p 0.0000 0.0001 632.4841 ++ 1481.818743 m 0.0001 125 | 3/38
4 h-m-p 0.0000 0.0002 253.1546 ++ 1462.354612 m 0.0002 166 | 4/38
5 h-m-p 0.0000 0.0000 1130.1676 ++ 1459.618900 m 0.0000 207 | 5/38
6 h-m-p 0.0000 0.0000 12263.9213 ++ 1447.968404 m 0.0000 248 | 6/38
7 h-m-p 0.0000 0.0000 1420.2772 ++ 1445.284751 m 0.0000 289 | 7/38
8 h-m-p 0.0000 0.0000 6632.0846 ++ 1423.600037 m 0.0000 330 | 8/38
9 h-m-p 0.0000 0.0000 20375.6034 ++ 1422.729639 m 0.0000 371 | 9/38
10 h-m-p 0.0000 0.0000 13199.8835 ++ 1401.919928 m 0.0000 412 | 10/38
11 h-m-p 0.0000 0.0000 45907.9126 ++ 1401.048321 m 0.0000 453 | 11/38
12 h-m-p 0.0000 0.0000 177991.1354 ++ 1392.843986 m 0.0000 494 | 12/38
13 h-m-p 0.0000 0.0000 36296.1753 ++ 1390.842748 m 0.0000 535 | 13/38
14 h-m-p 0.0000 0.0000 78418.8001 ++ 1380.350564 m 0.0000 576 | 14/38
15 h-m-p 0.0000 0.0000 1850.1329 ++ 1375.261390 m 0.0000 617 | 15/38
16 h-m-p 0.0000 0.0000 5798.0481 ++ 1373.879628 m 0.0000 658 | 16/38
17 h-m-p 0.0000 0.0000 2086.3560 ++ 1369.235613 m 0.0000 699 | 17/38
18 h-m-p 0.0000 0.0000 24485.1922 ++ 1365.318552 m 0.0000 740 | 18/38
19 h-m-p 0.0000 0.0000 175719.6975 ++ 1362.327006 m 0.0000 781 | 19/38
20 h-m-p 0.0000 0.0001 2965.7102 ++ 1341.434258 m 0.0001 822 | 19/38
21 h-m-p -0.0000 -0.0000 883.0807
h-m-p: -0.00000000e+00 -0.00000000e+00 8.83080692e+02 1341.434258
.. | 19/38
22 h-m-p 0.0000 0.0001 630.1876 ++ 1299.893126 m 0.0001 901 | 19/38
23 h-m-p 0.0000 0.0000 14653.9368 +CCYYYCCCCC 1278.745015 9 0.0000 958 | 19/38
24 h-m-p 0.0000 0.0000 6397.0495 +YYCYYYCC 1266.626544 7 0.0000 1009 | 19/38
25 h-m-p 0.0000 0.0000 23594.5175 +CCYYYCYCCC 1244.192630 9 0.0000 1065 | 19/38
26 h-m-p 0.0000 0.0000 4069.8606 +YYCYYCCC 1238.753440 7 0.0000 1117 | 19/38
27 h-m-p 0.0000 0.0000 4907.8302 +YYYYCYCCCC 1230.801149 9 0.0000 1172 | 19/38
28 h-m-p 0.0000 0.0000 8255.8042 +YYCYYYC 1223.659209 6 0.0000 1222 | 19/38
29 h-m-p 0.0000 0.0000 3499.8989 ++ 1222.037323 m 0.0000 1263 | 20/38
30 h-m-p 0.0000 0.0000 1614.0251 +YYCYCCC 1210.912915 6 0.0000 1314 | 20/38
31 h-m-p 0.0000 0.0000 715.9959 +YYYCCC 1208.823980 5 0.0000 1363 | 20/38
32 h-m-p 0.0000 0.0000 1109.1028 +YYYCCC 1206.856686 5 0.0000 1412 | 20/38
33 h-m-p 0.0000 0.0000 8522.8578 +YYYYCYCCC 1202.946300 8 0.0000 1465 | 20/38
34 h-m-p 0.0000 0.0000 588.4541 CCCC 1202.723303 3 0.0000 1512 | 20/38
35 h-m-p 0.0000 0.0001 437.6052 +YCYYYCC 1198.464608 6 0.0001 1563 | 20/38
36 h-m-p 0.0119 5.9328 11.3587 --YCCC 1198.373536 3 0.0004 1611 | 20/38
37 h-m-p 0.0013 0.0148 3.0302 ++ 1197.860023 m 0.0148 1652 | 21/38
38 h-m-p 0.0140 1.2731 3.0271 ++CYCC 1195.997175 3 0.2676 1700 | 21/38
39 h-m-p 0.1350 0.6749 0.3670 YCYCCC 1194.660486 5 0.3296 1749 | 20/38
40 h-m-p 0.1168 1.9903 1.0356 +CCCC 1193.378150 3 0.6168 1814 | 20/38
41 h-m-p 1.4673 7.3364 0.4238 CYCCC 1192.330871 4 1.2091 1862 | 20/38
42 h-m-p 0.9507 4.7535 0.3829 CCC 1191.907095 2 0.8679 1925 | 20/38
43 h-m-p 0.8813 4.9445 0.3771 YCCC 1191.213961 3 2.1896 1989 | 19/38
44 h-m-p 0.0063 0.0313 34.0660 CYC 1191.194173 2 0.0012 2051 | 19/38
45 h-m-p 0.1128 8.0000 0.3569 ++CCC 1190.909461 2 1.8906 2098 | 19/38
46 h-m-p 1.2986 6.4932 0.1528 CYCCC 1190.665134 4 2.4759 2165 | 19/38
47 h-m-p 1.6000 8.0000 0.1589 CCC 1190.567732 2 2.0304 2229 | 19/38
48 h-m-p 1.6000 8.0000 0.1503 YCCC 1190.372176 3 3.8839 2294 | 19/38
49 h-m-p 0.4312 2.1560 0.2658 ++ 1190.162068 m 2.1560 2354 | 20/38
50 h-m-p 0.5577 3.2946 1.0271 YC 1190.096506 1 0.2833 2415 | 20/38
51 h-m-p 1.6000 8.0000 0.1410 CCC 1189.991553 2 1.8073 2460 | 20/38
52 h-m-p 1.6000 8.0000 0.1489 YCCC 1189.860883 3 3.7872 2524 | 20/38
53 h-m-p 1.6000 8.0000 0.1501 CCC 1189.732888 2 2.2273 2587 | 20/38
54 h-m-p 1.6000 8.0000 0.1132 YCCC 1189.640812 3 2.7702 2651 | 20/38
55 h-m-p 1.6000 8.0000 0.0588 CCC 1189.588981 2 1.7286 2714 | 20/38
56 h-m-p 0.3969 8.0000 0.2562 +CCC 1189.526920 2 1.6376 2778 | 19/38
57 h-m-p 0.0197 0.1282 21.2686 -CC 1189.525039 1 0.0015 2840 | 19/38
58 h-m-p 0.3384 6.2093 0.0936 ++YC 1189.452325 1 3.5399 2884 | 19/38
59 h-m-p 0.0714 0.3569 0.2623 ++ 1189.420081 m 0.3569 2944 | 20/38
60 h-m-p 0.0659 3.1219 1.4216 ++YCCC 1189.238193 3 0.8252 3011 | 20/38
61 h-m-p 1.6000 8.0000 0.4019 CYC 1189.115021 2 1.4641 3055 | 20/38
62 h-m-p 1.6000 8.0000 0.3554 YC 1189.014565 1 2.7387 3115 | 20/38
63 h-m-p 1.6000 8.0000 0.3142 CCCC 1188.950333 3 2.1355 3180 | 20/38
64 h-m-p 1.6000 8.0000 0.2460 CCC 1188.879308 2 2.6599 3243 | 20/38
65 h-m-p 1.6000 8.0000 0.0495 CCC 1188.826235 2 2.5701 3306 | 20/38
66 h-m-p 1.3532 8.0000 0.0941 +YCC 1188.737812 2 4.1393 3369 | 20/38
67 h-m-p 0.6745 8.0000 0.5773 +CYC 1188.646523 2 3.2393 3432 | 20/38
68 h-m-p 1.6000 8.0000 0.4639 CCC 1188.629046 2 1.3822 3495 | 20/38
69 h-m-p 1.6000 8.0000 0.1746 CC 1188.626749 1 2.1687 3556 | 20/38
70 h-m-p 1.6000 8.0000 0.0549 CC 1188.625509 1 2.2522 3617 | 20/38
71 h-m-p 1.6000 8.0000 0.0143 CC 1188.624428 1 2.2637 3678 | 20/38
72 h-m-p 1.5740 8.0000 0.0206 C 1188.624229 0 1.3494 3737 | 20/38
73 h-m-p 1.6000 8.0000 0.0060 YC 1188.624110 1 3.9115 3797 | 20/38
74 h-m-p 1.6000 8.0000 0.0026 C 1188.624005 0 2.2113 3856 | 20/38
75 h-m-p 0.5363 8.0000 0.0108 Y 1188.623995 0 1.2699 3915 | 20/38
76 h-m-p 1.6000 8.0000 0.0012 C 1188.623994 0 1.9165 3974 | 20/38
77 h-m-p 1.6000 8.0000 0.0013 Y 1188.623994 0 2.7070 4033 | 20/38
78 h-m-p 1.6000 8.0000 0.0002 Y 1188.623994 0 0.7256 4092 | 20/38
79 h-m-p 1.6000 8.0000 0.0001 ----C 1188.623994 0 0.0016 4155 | 20/38
80 h-m-p 0.0160 8.0000 0.0001 +C 1188.623994 0 0.0640 4215 | 20/38
81 h-m-p 0.1306 8.0000 0.0001 --Y 1188.623994 0 0.0020 4276 | 20/38
82 h-m-p 0.0160 8.0000 0.0000 -----C 1188.623994 0 0.0000 4340
Out..
lnL = -1188.623994
4341 lfun, 17364 eigenQcodon, 429759 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -1196.502101 S = -1161.416973 -66.285222
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 65 patterns 3:14
did 20 / 65 patterns 3:14
did 30 / 65 patterns 3:14
did 40 / 65 patterns 3:14
did 50 / 65 patterns 3:14
did 60 / 65 patterns 3:14
did 65 / 65 patterns 3:14end of tree file.
Time used: 3:14
Model 7: beta
TREE # 1
(1, 3, 4, 6, (16, 19, (20, 21, 22, (23, 24), 25, 26)), (12, 13, 15, 18, 2, 7, 8), (10, 9), ((11, 14, 5), 17)); MP score: 23
0.093610 0.102256 0.035458 0.051883 0.058064 0.072596 0.031370 0.096993 0.029921 0.030051 0.029219 0.024670 0.055582 0.044097 0.068626 0.033922 0.050254 0.040293 0.011894 0.033584 0.031167 0.071614 0.059212 0.057551 0.019057 0.058439 0.012589 0.044749 0.087602 0.033117 0.055706 0.057293 0.015490 4.606659 1.100763 1.818728
ntime & nrate & np: 33 1 36
Bounds (np=36):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 4.391315
np = 36
lnL0 = -1504.415922
Iterating by ming2
Initial: fx= 1504.415922
x= 0.09361 0.10226 0.03546 0.05188 0.05806 0.07260 0.03137 0.09699 0.02992 0.03005 0.02922 0.02467 0.05558 0.04410 0.06863 0.03392 0.05025 0.04029 0.01189 0.03358 0.03117 0.07161 0.05921 0.05755 0.01906 0.05844 0.01259 0.04475 0.08760 0.03312 0.05571 0.05729 0.01549 4.60666 1.10076 1.81873
1 h-m-p 0.0000 0.0001 1065.0036 ++ 1433.809329 m 0.0001 41 | 1/36
2 h-m-p 0.0000 0.0000 42893.0422 ++ 1418.623103 m 0.0000 80 | 2/36
3 h-m-p 0.0000 0.0000 2980.1324 +YCYYYCYCCC 1410.385733 9 0.0000 133 | 2/36
4 h-m-p 0.0000 0.0000 1693.7763 ++ 1401.713567 m 0.0000 172 | 2/36
5 h-m-p 0.0000 0.0000 1870.7149 +YYYCYCCC 1394.526911 7 0.0000 222 | 2/36
6 h-m-p 0.0000 0.0000 941.5513 +YYCYCC 1388.326592 5 0.0000 269 | 2/36
7 h-m-p 0.0000 0.0000 1037.4821 +YYYYCC 1385.599085 5 0.0000 315 | 2/36
8 h-m-p 0.0000 0.0000 2587.5535 +YYCCCC 1383.839128 5 0.0000 363 | 2/36
9 h-m-p 0.0000 0.0000 2687.6543 +YYCYYC 1374.691514 5 0.0000 410 | 2/36
10 h-m-p 0.0000 0.0000 1131.9872 +YYYCCC 1370.573441 5 0.0000 457 | 2/36
11 h-m-p 0.0000 0.0000 4261.8617 +YYYCCC 1363.735532 5 0.0000 504 | 2/36
12 h-m-p 0.0000 0.0000 2689.1691 +CYCYYCCC 1352.574796 7 0.0000 555 | 2/36
13 h-m-p 0.0000 0.0000 4378.4899 ++ 1346.892188 m 0.0000 594 | 3/36
14 h-m-p 0.0000 0.0000 2220.5390 +YYYYCYCCC 1343.482700 8 0.0000 645 | 3/36
15 h-m-p 0.0000 0.0000 2953.3681 ++ 1333.465336 m 0.0000 684 | 4/36
16 h-m-p 0.0000 0.0000 2772.2494 ++ 1330.542274 m 0.0000 723 | 5/36
17 h-m-p 0.0000 0.0000 1207.1406 ++ 1326.624287 m 0.0000 762 | 6/36
18 h-m-p 0.0000 0.0000 2540.0552 ++ 1300.325163 m 0.0000 801 | 7/36
19 h-m-p 0.0000 0.0000 8246.2019 ++ 1279.845607 m 0.0000 840 | 8/36
20 h-m-p 0.0000 0.0001 563.6685 ++ 1266.294697 m 0.0001 879 | 9/36
21 h-m-p 0.0000 0.0000 973374.8197 ++ 1263.691812 m 0.0000 918 | 10/36
22 h-m-p 0.0000 0.0000 1503.4252 ++ 1262.995361 m 0.0000 957 | 11/36
23 h-m-p 0.0000 0.0000 20102.6407 ++ 1249.547577 m 0.0000 996 | 12/36
24 h-m-p 0.0000 0.0000 677.6290 ++ 1245.202002 m 0.0000 1035 | 13/36
25 h-m-p 0.0000 0.0000 115793.2930 ++ 1240.277457 m 0.0000 1074 | 14/36
26 h-m-p 0.0000 0.0000 854.8486 ++ 1238.718199 m 0.0000 1113 | 15/36
27 h-m-p 0.0000 0.0000 9393.1184 ++ 1231.208774 m 0.0000 1152 | 16/36
28 h-m-p 0.0000 0.0000 439.0054 ++ 1228.777873 m 0.0000 1191 | 17/36
29 h-m-p 0.0001 0.0007 54.3870 ++ 1219.058756 m 0.0007 1230 | 18/36
30 h-m-p 0.0000 0.0000 225.3184 ++ 1216.622287 m 0.0000 1269 | 19/36
31 h-m-p 0.0001 0.0016 63.8409 ++YYCYC 1213.874687 4 0.0011 1315 | 19/36
32 h-m-p 0.0000 0.0002 38.8141 YCYCCC 1213.376457 5 0.0001 1362 | 19/36
33 h-m-p 0.0009 0.0359 3.9962 ++YCYYCC 1207.988307 5 0.0300 1411 | 19/36
34 h-m-p 0.0041 0.0207 7.7984 +YYCCC 1204.585328 4 0.0145 1457 | 19/36
35 h-m-p 0.0113 0.0677 9.9996 +YYYCCC 1202.615529 5 0.0408 1504 | 19/36
36 h-m-p 0.3757 1.8786 0.2385 +YYCCC 1199.408456 4 1.1949 1550 | 19/36
37 h-m-p 0.1586 0.7931 1.0955 +YYCYCCC 1196.574064 6 0.5212 1616 | 19/36
38 h-m-p 1.0998 5.4988 0.2411 YYCCC 1196.133915 4 0.3840 1661 | 19/36
39 h-m-p 0.0890 1.1823 1.0407 +CYYYCYYYYY 1193.446456 10 1.0816 1730 | 19/36
40 h-m-p 0.0050 0.0249 4.5039 CYCCC 1193.402541 4 0.0099 1777 | 19/36
41 h-m-p 0.0112 0.0560 2.1207 ++ 1193.293815 m 0.0560 1816 | 19/36
42 h-m-p 0.0000 0.0000 0.0726
h-m-p: 1.11965665e-16 5.59828324e-16 7.26074065e-02 1193.293815
.. | 19/36
43 h-m-p 0.0000 0.0001 8539.1293 YCYCCCC 1190.602131 6 0.0000 1919 | 19/36
44 h-m-p 0.0000 0.0001 530.3339 CYCCC 1189.869062 4 0.0000 1965 | 19/36
45 h-m-p 0.0000 0.0001 175.9296 YCYCCC 1189.462429 5 0.0000 2012 | 19/36
46 h-m-p 0.0000 0.0001 70.2595 YYC 1189.433088 2 0.0000 2053 | 19/36
47 h-m-p 0.0000 0.0010 21.1049 CC 1189.423141 1 0.0000 2094 | 19/36
48 h-m-p 0.0001 0.0024 12.3717 CC 1189.422090 1 0.0000 2135 | 19/36
49 h-m-p 0.0001 0.0122 1.7141 C 1189.422031 0 0.0000 2174 | 19/36
50 h-m-p 0.0000 0.0118 2.2299 C 1189.421968 0 0.0000 2213 | 19/36
51 h-m-p 0.0001 0.0152 1.8659 C 1189.421924 0 0.0001 2252 | 19/36
52 h-m-p 0.0000 0.0169 2.6631 C 1189.421871 0 0.0001 2291 | 19/36
53 h-m-p 0.0000 0.0202 3.6969 YC 1189.421781 1 0.0001 2331 | 19/36
54 h-m-p 0.0005 0.0156 0.5348 -Y 1189.421779 0 0.0000 2371 | 19/36
55 h-m-p 0.0007 0.3477 0.0969 C 1189.421763 0 0.0007 2427 | 19/36
56 h-m-p 0.0000 0.0218 3.7562 +C 1189.421585 0 0.0002 2484 | 19/36
57 h-m-p 0.0000 0.0023 29.7234 +++YC 1189.408955 1 0.0017 2527 | 19/36
58 h-m-p 0.0000 0.0000 2247.5197 ++ 1189.401828 m 0.0000 2566 | 19/36
59 h-m-p -0.0000 -0.0000 0.1596
h-m-p: -0.00000000e+00 -0.00000000e+00 1.59603612e-01 1189.401828
.. | 19/36
60 h-m-p 0.0000 0.0001 62.2800 CCC 1189.368493 2 0.0000 2662 | 19/36
61 h-m-p 0.0002 0.0012 5.4058 -C 1189.368270 0 0.0000 2702 | 19/36
62 h-m-p 0.0001 0.0091 0.9785 C 1189.368256 0 0.0000 2741 | 19/36
63 h-m-p 0.0001 0.0647 0.3268 C 1189.368255 0 0.0000 2797 | 19/36
64 h-m-p 0.0002 0.0755 0.2792 C 1189.368254 0 0.0000 2853 | 19/36
65 h-m-p 0.0015 0.7427 0.1035 Y 1189.368250 0 0.0009 2909 | 19/36
66 h-m-p 0.0001 0.0514 2.9143 Y 1189.368245 0 0.0000 2965 | 19/36
67 h-m-p 0.0003 0.1503 2.4660 Y 1189.368232 0 0.0001 3004 | 19/36
68 h-m-p 0.0001 0.0276 3.4250 Y 1189.368227 0 0.0000 3043 | 19/36
69 h-m-p 0.0002 0.0442 0.6741 -C 1189.368226 0 0.0000 3083 | 19/36
70 h-m-p 0.0018 0.9237 0.1149 Y 1189.368222 0 0.0012 3139 | 19/36
71 h-m-p 0.0000 0.0065 9.5704 +++++ 1189.365325 m 0.0065 3198 | 20/36
72 h-m-p 0.0000 0.0004 1571.4079 YC 1189.364658 1 0.0000 3238 | 20/36
73 h-m-p 0.0318 0.1588 0.2272 ----C 1189.364658 0 0.0000 3281 | 20/36
74 h-m-p 0.0022 1.0891 0.5851 +++YYYYY 1189.362386 4 0.1394 3343 | 20/36
75 h-m-p 0.0003 0.0017 310.3090 -C 1189.362297 0 0.0000 3399 | 20/36
76 h-m-p 0.0204 0.7577 0.2227 -Y 1189.362289 0 0.0022 3439 | 20/36
77 h-m-p 0.0003 0.1401 31.9729 +YYY 1189.361846 2 0.0011 3497 | 20/36
78 h-m-p 0.8964 8.0000 0.0400 C 1189.361593 0 0.8102 3536 | 20/36
79 h-m-p 1.6000 8.0000 0.0006 Y 1189.361589 0 0.6640 3591 | 19/36
80 h-m-p 0.0487 8.0000 0.0082 Y 1189.361589 0 0.0072 3646 | 19/36
81 h-m-p 0.0997 1.8848 0.0006 +++ 1189.361588 m 1.8848 3703 | 20/36
82 h-m-p 1.1168 8.0000 0.0010 Y 1189.361587 0 0.7468 3759 | 20/36
83 h-m-p 1.4879 8.0000 0.0005 C 1189.361587 0 1.6395 3814 | 20/36
84 h-m-p 1.6000 8.0000 0.0001 Y 1189.361587 0 3.4985 3869 | 20/36
85 h-m-p 1.6000 8.0000 0.0001 -C 1189.361587 0 0.1361 3925 | 20/36
86 h-m-p 0.1558 8.0000 0.0001 Y 1189.361587 0 0.0305 3980 | 20/36
87 h-m-p 0.0315 8.0000 0.0001 Y 1189.361587 0 0.0051 4035 | 20/36
88 h-m-p 0.0160 8.0000 0.0001 C 1189.361587 0 0.0040 4090 | 20/36
89 h-m-p 0.0160 8.0000 0.0001 ------C 1189.361587 0 0.0000 4151
Out..
lnL = -1189.361587
4152 lfun, 45672 eigenQcodon, 1370160 P(t)
end of tree file.
Time used: 9:46
Model 8: beta&w>1
TREE # 1
(1, 3, 4, 6, (16, 19, (20, 21, 22, (23, 24), 25, 26)), (12, 13, 15, 18, 2, 7, 8), (10, 9), ((11, 14, 5), 17)); MP score: 23
0.085269 0.070809 0.097387 0.057282 0.061568 0.032455 0.020730 0.101738 0.085221 0.028236 0.045703 0.104055 0.026668 0.044363 0.059412 0.064315 0.063395 0.036016 0.087266 0.090160 0.069380 0.043666 0.075932 0.069327 0.056789 0.094858 0.068379 0.095589 0.043350 0.046120 0.081947 0.090308 0.093851 4.204327 0.900000 1.047003 1.653799 1.300000
ntime & nrate & np: 33 2 38
Bounds (np=38):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 3.999917
np = 38
lnL0 = -1585.372768
Iterating by ming2
Initial: fx= 1585.372768
x= 0.08527 0.07081 0.09739 0.05728 0.06157 0.03245 0.02073 0.10174 0.08522 0.02824 0.04570 0.10406 0.02667 0.04436 0.05941 0.06431 0.06339 0.03602 0.08727 0.09016 0.06938 0.04367 0.07593 0.06933 0.05679 0.09486 0.06838 0.09559 0.04335 0.04612 0.08195 0.09031 0.09385 4.20433 0.90000 1.04700 1.65380 1.30000
1 h-m-p 0.0000 0.0002 924.4937 ++ 1449.030174 m 0.0002 43 | 1/38
2 h-m-p 0.0000 0.0000 19661.1968 +CYYYYYCCCC 1427.992269 9 0.0000 99 | 1/38
3 h-m-p 0.0000 0.0000 9587.0836 ++ 1420.295065 m 0.0000 140 | 2/38
4 h-m-p 0.0000 0.0000 9927.5814 ++ 1363.485789 m 0.0000 181 | 3/38
5 h-m-p 0.0000 0.0000 54904.7938 ++ 1360.320669 m 0.0000 222 | 4/38
6 h-m-p 0.0000 0.0000 7222.1272 ++ 1354.300128 m 0.0000 263 | 5/38
7 h-m-p 0.0000 0.0000 1042.1711 ++ 1349.684706 m 0.0000 304 | 6/38
8 h-m-p 0.0000 0.0000 1912.9057 ++ 1291.170011 m 0.0000 345 | 7/38
9 h-m-p 0.0000 0.0000 19571.7150 ++ 1284.665207 m 0.0000 386 | 8/38
10 h-m-p 0.0000 0.0000 11540.8448 ++ 1266.056833 m 0.0000 427 | 9/38
11 h-m-p 0.0000 0.0000 5187.8629 ++ 1248.191040 m 0.0000 468 | 10/38
12 h-m-p 0.0000 0.0000 2563.5412 ++ 1246.227167 m 0.0000 509 | 11/38
13 h-m-p 0.0000 0.0000 6805.9939 ++ 1246.075345 m 0.0000 550 | 12/38
14 h-m-p 0.0000 0.0000 3392.7455 ++ 1243.021104 m 0.0000 591 | 13/38
15 h-m-p 0.0000 0.0000 4556.2630 ++ 1233.253472 m 0.0000 632 | 14/38
16 h-m-p 0.0000 0.0000 7104.3500 ++ 1218.361873 m 0.0000 673 | 15/38
17 h-m-p 0.0000 0.0000 1282.0105 ++ 1212.942436 m 0.0000 714 | 16/38
18 h-m-p 0.0000 0.0000 1269.6035 ++ 1212.459600 m 0.0000 755 | 17/38
19 h-m-p 0.0000 0.0000 1536.7851 ++ 1210.297232 m 0.0000 796 | 18/38
20 h-m-p 0.0000 0.0000 1083.7042 ++ 1210.155284 m 0.0000 837 | 19/38
21 h-m-p 0.0000 0.0017 25.3948 +++CYYYYCCCCC 1208.084634 9 0.0012 895 | 19/38
22 h-m-p 0.0001 0.0006 190.3993 +YYYCCC 1204.174882 5 0.0005 944 | 19/38
23 h-m-p 0.0002 0.0010 30.7250 CCCC 1203.855676 3 0.0003 991 | 19/38
24 h-m-p 0.0002 0.0018 49.9070 +CYCCC 1199.675860 4 0.0015 1041 | 19/38
25 h-m-p 0.0011 0.0057 12.0365 +YCYCCC 1198.972133 5 0.0032 1091 | 19/38
26 h-m-p 0.0004 0.0020 42.5642 YCYCCC 1198.243279 5 0.0011 1140 | 19/38
27 h-m-p 0.0011 0.0053 30.1592 +CCC 1196.644975 2 0.0043 1186 | 19/38
28 h-m-p 0.0003 0.0013 28.0484 ++ 1196.116193 m 0.0013 1227 | 20/38
29 h-m-p 0.0018 0.0227 16.3475 +CYCCC 1195.123602 4 0.0119 1276 | 20/38
30 h-m-p 0.0044 0.0218 22.9633 CCCC 1194.687852 3 0.0051 1323 | 20/38
31 h-m-p 0.0035 0.0175 32.7613 CYCCC 1193.567542 4 0.0082 1372 | 20/38
32 h-m-p 0.0065 0.0324 6.3334 CCCC 1193.352560 3 0.0102 1419 | 19/38
33 h-m-p 0.0004 0.0022 67.3833 ++ 1192.382920 m 0.0022 1460 | 19/38
34 h-m-p -0.0000 -0.0000 3.0498
h-m-p: -0.00000000e+00 -0.00000000e+00 3.04983656e+00 1192.382920
.. | 19/38
35 h-m-p 0.0000 0.0001 692.0091 CYYC 1190.912848 3 0.0000 1543 | 19/38
36 h-m-p 0.0000 0.0001 259.4918 YCYCCC 1190.111185 5 0.0000 1592 | 19/38
37 h-m-p 0.0000 0.0001 88.9534 CCY 1190.049410 2 0.0000 1637 | 19/38
38 h-m-p 0.0000 0.0017 45.5938 CYC 1190.019957 2 0.0000 1681 | 19/38
39 h-m-p 0.0001 0.0010 14.9315 CC 1190.015864 1 0.0000 1724 | 19/38
40 h-m-p 0.0000 0.0017 13.9957 CC 1190.013521 1 0.0000 1767 | 19/38
41 h-m-p 0.0000 0.0104 20.4997 ++YCC 1189.961037 2 0.0008 1813 | 19/38
42 h-m-p 0.0000 0.0003 319.6492 YYC 1189.916260 2 0.0000 1856 | 19/38
43 h-m-p 0.0001 0.0005 178.5173 YC 1189.892795 1 0.0000 1898 | 19/38
44 h-m-p 0.0001 0.0015 111.4937 YC 1189.882272 1 0.0000 1940 | 19/38
45 h-m-p 0.0002 0.0040 15.1158 YCC 1189.866036 2 0.0004 1984 | 19/38
46 h-m-p 0.0000 0.0004 256.7399 +YCYC 1189.711134 3 0.0002 2030 | 19/38
47 h-m-p 0.0000 0.0000 3926.6641 +YC 1189.572377 1 0.0000 2073 | 19/38
48 h-m-p 0.0004 0.0020 4.8398 -YC 1189.572246 1 0.0000 2116 | 19/38
49 h-m-p 0.0001 0.0284 1.2140 +YC 1189.571728 1 0.0006 2159 | 19/38
50 h-m-p 0.0000 0.0056 47.9715 ++YC 1189.551563 1 0.0006 2203 | 19/38
51 h-m-p 0.0000 0.0008 2057.7470 ++YCYCYCCC 1188.838638 7 0.0004 2257 | 19/38
52 h-m-p 0.2130 1.0649 0.2118 +CC 1188.720484 1 0.7524 2301 | 19/38
53 h-m-p 0.0888 0.4441 0.4716 ++ 1188.655644 m 0.4441 2361 | 20/38
54 h-m-p 1.0313 8.0000 0.2030 CCC 1188.634435 2 1.1733 2425 | 20/38
55 h-m-p 1.6000 8.0000 0.0647 CC 1188.627114 1 1.3776 2486 | 20/38
56 h-m-p 1.5298 8.0000 0.0583 CC 1188.624666 1 1.3093 2547 | 20/38
57 h-m-p 1.6000 8.0000 0.0220 C 1188.624068 0 1.5767 2606 | 20/38
58 h-m-p 1.6000 8.0000 0.0084 YC 1188.624015 1 1.0170 2666 | 20/38
59 h-m-p 1.6000 8.0000 0.0040 C 1188.624000 0 1.5184 2725 | 20/38
60 h-m-p 1.6000 8.0000 0.0038 C 1188.623989 0 1.9328 2784 | 20/38
61 h-m-p 1.6000 8.0000 0.0006 Y 1188.623988 0 1.1318 2843 | 20/38
62 h-m-p 1.6000 8.0000 0.0001 Y 1188.623988 0 1.2722 2902 | 20/38
63 h-m-p 1.6000 8.0000 0.0000 C 1188.623988 0 0.5916 2961 | 20/38
64 h-m-p 0.8507 8.0000 0.0000 ----Y 1188.623988 0 0.0008 3024
Out..
lnL = -1188.623988
3025 lfun, 36300 eigenQcodon, 1098075 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -1196.199556 S = -1161.416992 -39.858404
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 65 patterns 15:01
did 20 / 65 patterns 15:01
did 30 / 65 patterns 15:02
did 40 / 65 patterns 15:02
did 50 / 65 patterns 15:02
did 60 / 65 patterns 15:02
did 65 / 65 patterns 15:02end of tree file.
Time used: 15:02
The loglikelihoods for models M1, M2, M7 and M8 are -1189.294580 -1188.623994 -1189.361587 -1188.623988 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
Amsterdam_057_1ab_VIPR_ALG1_93004446_10013_10849_1_NA_Netherlands_Unknown_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
Amsterdam_496_1ab_VIPR_ALG1_93004453_9998_10834_1_NA_Netherlands_Unknown_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_DEN_2005_1062_PP1ab_VIPR_ALG1_380710266_9968_10804_1_2005_04_12_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_DEN_2005_193_PP1ab_VIPR_ALG1_380710224_9968_10804_1_2005_01_11_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_DEN_2005_1862_PP1ab_VIPR_ALG1_380710274_9968_10804_1_2005_11_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLFLTMFLKHK
NL63_DEN_2005_1876_PP1ab_VIPR_ALG1_380710282_9968_10804_1_2005_11_21_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_DEN_2005_232_PP1ab_VIPR_ALG1_380710232_9953_10789_1_2005_01_18_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_DEN_2005_235_PP1ab_VIPR_ALG1_380710240_9953_10789_1_2005_01_19_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_DEN_2005_347_PP1ab_VIPR_ALG1_380710256_9968_10804_1_2005_02_01_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_DEN_2005_271_PP1ab_VIPR_ALG1_380710248_9968_10804_1_2005_01_23_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_DEN_2008_16_PP1ab_VIPR_ALG1_380710208_9968_10804_1_2008_01_08_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLFLTMFLKHK
NL63_DEN_2009_14_PP1ab_VIPR_ALG1_380710192_9953_10789_1_2009_03_01_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_DEN_2009_15_PP1ab_VIPR_ALG1_380710200_9953_10789_1_2009_02_13_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_DEN_2009_20_PP1ab_VIPR_ALG1_380710216_9968_10804_1_2009_03_12_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLFLTMFLKHK
NL63_DEN_2009_9_PP1ab_VIPR_ALG1_380710184_9953_10789_1_2009_03_16_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_human_USA_838_9_1983_Pp1ab_VIPR_ALG1_530802111_9948_10784_1_1983_08_16_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_human_USA_0111_25_2001_Pp1ab_VIPR_ALG1_530802127_9933_10769_1_2001_11_21_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_human_USA_8712_17_1987_Pp1ab_VIPR_ALG1_530802079_9939_10775_1_1987_12_16_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_human_USA_901_24_1990_Pp1ab_VIPR_ALG1_530802119_9948_10784_1_1990_01_05_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_human_USA_891_6_1989_Pp1ab_VIPR_ALG1_530802095_9948_10784_1_1989_01_05_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSIFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_human_USA_891_4_1989_Pp1ab_VIPR_ALG1_530802143_9948_10784_1_1989_01_03_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_human_USA_903_28_1990_Pp1ab_VIPR_ALG1_530802103_9948_10784_1_1990_03_21_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_human_USA_911_56_1991_Pp1ab_VIPR_ALG1_530802087_9948_10784_1_1991_01_24_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_human_USA_904_20_1990_Pp1ab_VIPR_ALG1_530802063_9948_10784_1_1990_04_26_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
NL63_human_USA_905_25_1990_Pp1ab_VIPR_ALG1_530802135_9948_10784_1_1990_05_29_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHK
***************:***********************************.********
Amsterdam_057_1ab_VIPR_ALG1_93004446_10013_10849_1_NA_Netherlands_Unknown_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
Amsterdam_496_1ab_VIPR_ALG1_93004453_9998_10834_1_NA_Netherlands_Unknown_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_DEN_2005_1062_PP1ab_VIPR_ALG1_380710266_9968_10804_1_2005_04_12_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_DEN_2005_193_PP1ab_VIPR_ALG1_380710224_9968_10804_1_2005_01_11_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_DEN_2005_1862_PP1ab_VIPR_ALG1_380710274_9968_10804_1_2005_11_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_DEN_2005_1876_PP1ab_VIPR_ALG1_380710282_9968_10804_1_2005_11_21_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_DEN_2005_232_PP1ab_VIPR_ALG1_380710232_9953_10789_1_2005_01_18_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_DEN_2005_235_PP1ab_VIPR_ALG1_380710240_9953_10789_1_2005_01_19_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_DEN_2005_347_PP1ab_VIPR_ALG1_380710256_9968_10804_1_2005_02_01_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_DEN_2005_271_PP1ab_VIPR_ALG1_380710248_9968_10804_1_2005_01_23_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_DEN_2008_16_PP1ab_VIPR_ALG1_380710208_9968_10804_1_2008_01_08_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_DEN_2009_14_PP1ab_VIPR_ALG1_380710192_9953_10789_1_2009_03_01_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_DEN_2009_15_PP1ab_VIPR_ALG1_380710200_9953_10789_1_2009_02_13_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_DEN_2009_20_PP1ab_VIPR_ALG1_380710216_9968_10804_1_2009_03_12_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_DEN_2009_9_PP1ab_VIPR_ALG1_380710184_9953_10789_1_2009_03_16_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_human_USA_838_9_1983_Pp1ab_VIPR_ALG1_530802111_9948_10784_1_1983_08_16_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_human_USA_0111_25_2001_Pp1ab_VIPR_ALG1_530802127_9933_10769_1_2001_11_21_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_human_USA_8712_17_1987_Pp1ab_VIPR_ALG1_530802079_9939_10775_1_1987_12_16_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_human_USA_901_24_1990_Pp1ab_VIPR_ALG1_530802119_9948_10784_1_1990_01_05_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLACLFVVFL
NL63_human_USA_891_6_1989_Pp1ab_VIPR_ALG1_530802095_9948_10784_1_1989_01_05_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_human_USA_891_4_1989_Pp1ab_VIPR_ALG1_530802143_9948_10784_1_1989_01_03_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_human_USA_903_28_1990_Pp1ab_VIPR_ALG1_530802103_9948_10784_1_1990_03_21_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_human_USA_911_56_1991_Pp1ab_VIPR_ALG1_530802087_9948_10784_1_1991_01_24_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_human_USA_904_20_1990_Pp1ab_VIPR_ALG1_530802063_9948_10784_1_1990_04_26_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
NL63_human_USA_905_25_1990_Pp1ab_VIPR_ALG1_530802135_9948_10784_1_1990_05_29_USA_Human_Human_coronavirus_NL63 FLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFL
****************************************************.*******
Amsterdam_057_1ab_VIPR_ALG1_93004446_10013_10849_1_NA_Netherlands_Unknown_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
Amsterdam_496_1ab_VIPR_ALG1_93004453_9998_10834_1_NA_Netherlands_Unknown_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_DEN_2005_1062_PP1ab_VIPR_ALG1_380710266_9968_10804_1_2005_04_12_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_DEN_2005_193_PP1ab_VIPR_ALG1_380710224_9968_10804_1_2005_01_11_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_DEN_2005_1862_PP1ab_VIPR_ALG1_380710274_9968_10804_1_2005_11_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_DEN_2005_1876_PP1ab_VIPR_ALG1_380710282_9968_10804_1_2005_11_21_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_DEN_2005_232_PP1ab_VIPR_ALG1_380710232_9953_10789_1_2005_01_18_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_DEN_2005_235_PP1ab_VIPR_ALG1_380710240_9953_10789_1_2005_01_19_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_DEN_2005_347_PP1ab_VIPR_ALG1_380710256_9968_10804_1_2005_02_01_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_DEN_2005_271_PP1ab_VIPR_ALG1_380710248_9968_10804_1_2005_01_23_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_DEN_2008_16_PP1ab_VIPR_ALG1_380710208_9968_10804_1_2008_01_08_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_DEN_2009_14_PP1ab_VIPR_ALG1_380710192_9953_10789_1_2009_03_01_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_DEN_2009_15_PP1ab_VIPR_ALG1_380710200_9953_10789_1_2009_02_13_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_DEN_2009_20_PP1ab_VIPR_ALG1_380710216_9968_10804_1_2009_03_12_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_DEN_2009_9_PP1ab_VIPR_ALG1_380710184_9953_10789_1_2009_03_16_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_human_USA_838_9_1983_Pp1ab_VIPR_ALG1_530802111_9948_10784_1_1983_08_16_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_human_USA_0111_25_2001_Pp1ab_VIPR_ALG1_530802127_9933_10769_1_2001_11_21_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_human_USA_8712_17_1987_Pp1ab_VIPR_ALG1_530802079_9939_10775_1_1987_12_16_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_human_USA_901_24_1990_Pp1ab_VIPR_ALG1_530802119_9948_10784_1_1990_01_05_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_human_USA_891_6_1989_Pp1ab_VIPR_ALG1_530802095_9948_10784_1_1989_01_05_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_human_USA_891_4_1989_Pp1ab_VIPR_ALG1_530802143_9948_10784_1_1989_01_03_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_human_USA_903_28_1990_Pp1ab_VIPR_ALG1_530802103_9948_10784_1_1990_03_21_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_human_USA_911_56_1991_Pp1ab_VIPR_ALG1_530802087_9948_10784_1_1991_01_24_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_human_USA_904_20_1990_Pp1ab_VIPR_ALG1_530802063_9948_10784_1_1990_04_26_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
NL63_human_USA_905_25_1990_Pp1ab_VIPR_ALG1_530802135_9948_10784_1_1990_05_29_USA_Human_Human_coronavirus_NL63 HTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRL
************************************************************
Amsterdam_057_1ab_VIPR_ALG1_93004446_10013_10849_1_NA_Netherlands_Unknown_Human_coronavirus_NL63 IVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
Amsterdam_496_1ab_VIPR_ALG1_93004453_9998_10834_1_NA_Netherlands_Unknown_Human_coronavirus_NL63 IVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_DEN_2005_1062_PP1ab_VIPR_ALG1_380710266_9968_10804_1_2005_04_12_USA_Human_Human_coronavirus_NL63 IVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_DEN_2005_193_PP1ab_VIPR_ALG1_380710224_9968_10804_1_2005_01_11_USA_Human_Human_coronavirus_NL63 IVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_DEN_2005_1862_PP1ab_VIPR_ALG1_380710274_9968_10804_1_2005_11_USA_Human_Human_coronavirus_NL63 IVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_DEN_2005_1876_PP1ab_VIPR_ALG1_380710282_9968_10804_1_2005_11_21_USA_Human_Human_coronavirus_NL63 IVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_DEN_2005_232_PP1ab_VIPR_ALG1_380710232_9953_10789_1_2005_01_18_USA_Human_Human_coronavirus_NL63 IVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_DEN_2005_235_PP1ab_VIPR_ALG1_380710240_9953_10789_1_2005_01_19_USA_Human_Human_coronavirus_NL63 IVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_DEN_2005_347_PP1ab_VIPR_ALG1_380710256_9968_10804_1_2005_02_01_USA_Human_Human_coronavirus_NL63 IVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_DEN_2005_271_PP1ab_VIPR_ALG1_380710248_9968_10804_1_2005_01_23_USA_Human_Human_coronavirus_NL63 IVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_DEN_2008_16_PP1ab_VIPR_ALG1_380710208_9968_10804_1_2008_01_08_USA_Human_Human_coronavirus_NL63 IVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_DEN_2009_14_PP1ab_VIPR_ALG1_380710192_9953_10789_1_2009_03_01_USA_Human_Human_coronavirus_NL63 IVFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_DEN_2009_15_PP1ab_VIPR_ALG1_380710200_9953_10789_1_2009_02_13_USA_Human_Human_coronavirus_NL63 IVIFSPESVFNVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_DEN_2009_20_PP1ab_VIPR_ALG1_380710216_9968_10804_1_2009_03_12_USA_Human_Human_coronavirus_NL63 IVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_DEN_2009_9_PP1ab_VIPR_ALG1_380710184_9953_10789_1_2009_03_16_USA_Human_Human_coronavirus_NL63 IVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_human_USA_838_9_1983_Pp1ab_VIPR_ALG1_530802111_9948_10784_1_1983_08_16_USA_Human_Human_coronavirus_NL63 IIFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63 IVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_human_USA_0111_25_2001_Pp1ab_VIPR_ALG1_530802127_9933_10769_1_2001_11_21_USA_Human_Human_coronavirus_NL63 IVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_human_USA_8712_17_1987_Pp1ab_VIPR_ALG1_530802079_9939_10775_1_1987_12_16_USA_Human_Human_coronavirus_NL63 ILFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_human_USA_901_24_1990_Pp1ab_VIPR_ALG1_530802119_9948_10784_1_1990_01_05_USA_Human_Human_coronavirus_NL63 IIFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_human_USA_891_6_1989_Pp1ab_VIPR_ALG1_530802095_9948_10784_1_1989_01_05_USA_Human_Human_coronavirus_NL63 IIFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_human_USA_891_4_1989_Pp1ab_VIPR_ALG1_530802143_9948_10784_1_1989_01_03_USA_Human_Human_coronavirus_NL63 IIFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_human_USA_903_28_1990_Pp1ab_VIPR_ALG1_530802103_9948_10784_1_1990_03_21_USA_Human_Human_coronavirus_NL63 IIFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_human_USA_911_56_1991_Pp1ab_VIPR_ALG1_530802087_9948_10784_1_1991_01_24_USA_Human_Human_coronavirus_NL63 IIFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_human_USA_904_20_1990_Pp1ab_VIPR_ALG1_530802063_9948_10784_1_1990_04_26_USA_Human_Human_coronavirus_NL63 IIFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
NL63_human_USA_905_25_1990_Pp1ab_VIPR_ALG1_530802135_9948_10784_1_1990_05_29_USA_Human_Human_coronavirus_NL63 IIFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEF
*::*******.*************************************************
Amsterdam_057_1ab_VIPR_ALG1_93004446_10013_10849_1_NA_Netherlands_Unknown_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
Amsterdam_496_1ab_VIPR_ALG1_93004453_9998_10834_1_NA_Netherlands_Unknown_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_DEN_2005_1062_PP1ab_VIPR_ALG1_380710266_9968_10804_1_2005_04_12_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_DEN_2005_193_PP1ab_VIPR_ALG1_380710224_9968_10804_1_2005_01_11_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_DEN_2005_1862_PP1ab_VIPR_ALG1_380710274_9968_10804_1_2005_11_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_DEN_2005_1876_PP1ab_VIPR_ALG1_380710282_9968_10804_1_2005_11_21_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_DEN_2005_232_PP1ab_VIPR_ALG1_380710232_9953_10789_1_2005_01_18_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_DEN_2005_235_PP1ab_VIPR_ALG1_380710240_9953_10789_1_2005_01_19_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_DEN_2005_347_PP1ab_VIPR_ALG1_380710256_9968_10804_1_2005_02_01_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_DEN_2005_271_PP1ab_VIPR_ALG1_380710248_9968_10804_1_2005_01_23_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_DEN_2008_16_PP1ab_VIPR_ALG1_380710208_9968_10804_1_2008_01_08_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_DEN_2009_14_PP1ab_VIPR_ALG1_380710192_9953_10789_1_2009_03_01_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_DEN_2009_15_PP1ab_VIPR_ALG1_380710200_9953_10789_1_2009_02_13_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_DEN_2009_20_PP1ab_VIPR_ALG1_380710216_9968_10804_1_2009_03_12_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_DEN_2009_9_PP1ab_VIPR_ALG1_380710184_9953_10789_1_2009_03_16_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_human_USA_838_9_1983_Pp1ab_VIPR_ALG1_530802111_9948_10784_1_1983_08_16_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_human_USA_0111_25_2001_Pp1ab_VIPR_ALG1_530802127_9933_10769_1_2001_11_21_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_human_USA_8712_17_1987_Pp1ab_VIPR_ALG1_530802079_9939_10775_1_1987_12_16_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTIQ
NL63_human_USA_901_24_1990_Pp1ab_VIPR_ALG1_530802119_9948_10784_1_1990_01_05_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_human_USA_891_6_1989_Pp1ab_VIPR_ALG1_530802095_9948_10784_1_1989_01_05_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_human_USA_891_4_1989_Pp1ab_VIPR_ALG1_530802143_9948_10784_1_1989_01_03_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_human_USA_903_28_1990_Pp1ab_VIPR_ALG1_530802103_9948_10784_1_1990_03_21_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_human_USA_911_56_1991_Pp1ab_VIPR_ALG1_530802087_9948_10784_1_1991_01_24_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_human_USA_904_20_1990_Pp1ab_VIPR_ALG1_530802063_9948_10784_1_1990_04_26_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
NL63_human_USA_905_25_1990_Pp1ab_VIPR_ALG1_530802135_9948_10784_1_1990_05_29_USA_Human_Human_coronavirus_NL63 KYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
*************************************:*
>Amsterdam_057_1ab_VIPR_ALG1_93004446_10013_10849_1_NA_Netherlands_Unknown_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTGTAATTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >Amsterdam_496_1ab_VIPR_ALG1_93004453_9998_10834_1_NA_Netherlands_Unknown_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTTTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTAGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTGTAATTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_DEN_2005_1062_PP1ab_VIPR_ALG1_380710266_9968_10804_1_2005_04_12_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTGTAATTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_DEN_2005_193_PP1ab_VIPR_ALG1_380710224_9968_10804_1_2005_01_11_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTGTAATTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTTAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_DEN_2005_1862_PP1ab_VIPR_ALG1_380710274_9968_10804_1_2005_11_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTATTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTATCACGTTTGATTGTAATTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_DEN_2005_1876_PP1ab_VIPR_ALG1_380710282_9968_10804_1_2005_11_21_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTGTAATTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_DEN_2005_232_PP1ab_VIPR_ALG1_380710232_9953_10789_1_2005_01_18_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTTTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTAGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTGTAATTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_DEN_2005_235_PP1ab_VIPR_ALG1_380710240_9953_10789_1_2005_01_19_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTTTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTAGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTGTAATTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_DEN_2005_347_PP1ab_VIPR_ALG1_380710256_9968_10804_1_2005_02_01_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTGTAATTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATCTCAACTGTCCAA >NL63_DEN_2005_271_PP1ab_VIPR_ALG1_380710248_9968_10804_1_2005_01_23_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTGTAATTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATCTCAACTGTCCAA >NL63_DEN_2008_16_PP1ab_VIPR_ALG1_380710208_9968_10804_1_2008_01_08_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTATTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTATCACGTTTGATTGTAATTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_DEN_2009_14_PP1ab_VIPR_ALG1_380710192_9953_10789_1_2009_03_01_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTGTTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTTTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTAGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTGTATTTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_DEN_2009_15_PP1ab_VIPR_ALG1_380710200_9953_10789_1_2009_02_13_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTTTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTAGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTGTAATTTTTTCACCTGAAAGTGTATTTAATGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_DEN_2009_20_PP1ab_VIPR_ALG1_380710216_9968_10804_1_2009_03_12_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTATTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTATCACGTTTGATTGTAATTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGCACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_DEN_2009_9_PP1ab_VIPR_ALG1_380710184_9953_10789_1_2009_03_16_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTTTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTAGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTGTAATTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_human_USA_838_9_1983_Pp1ab_VIPR_ALG1_530802111_9948_10784_1_1983_08_16_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTCACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTATATTTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTCACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAATTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTATCACGTTTGATTGTAATTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_human_USA_0111_25_2001_Pp1ab_VIPR_ALG1_530802127_9933_10769_1_2001_11_21_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTTTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTTACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTAGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTGTAATTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTTACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAACTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_human_USA_8712_17_1987_Pp1ab_VIPR_ALG1_530802079_9939_10775_1_1987_12_16_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTGGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTCACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGATTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTTTATTTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTCACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGACGCACTTTGGTTATCATTCAAATTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTATCCAA >NL63_human_USA_901_24_1990_Pp1ab_VIPR_ALG1_530802119_9948_10784_1_1990_01_05_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTAGCCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTCACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTATATTTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTCACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAATTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_human_USA_891_6_1989_Pp1ab_VIPR_ALG1_530802095_9948_10784_1_1989_01_05_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCATTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTAGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTCACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTATATTTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTCACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAATTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_human_USA_891_4_1989_Pp1ab_VIPR_ALG1_530802143_9948_10784_1_1989_01_03_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTAGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTCACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTATATTTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTCACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAATTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_human_USA_903_28_1990_Pp1ab_VIPR_ALG1_530802103_9948_10784_1_1990_03_21_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGATCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTAGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTCACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTATATTTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTCACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAATTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_human_USA_911_56_1991_Pp1ab_VIPR_ALG1_530802087_9948_10784_1_1991_01_24_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGATCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTAGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTCACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTATATTTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTCACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAATTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_human_USA_904_20_1990_Pp1ab_VIPR_ALG1_530802063_9948_10784_1_1990_04_26_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTAGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTCACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTATATTTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTCACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAATTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA >NL63_human_USA_905_25_1990_Pp1ab_VIPR_ALG1_530802135_9948_10784_1_1990_05_29_USA_Human_Human_coronavirus_NL63 AGTGGTAAGGTTATTTTTGGTTTAAAAACAATGTTTTTATTTAGCGTTTTCTTCACAATGTTTTGGGCAGAACTCTTTATTTATACAAACACTATATGGATAAACCCTGTGATACTTACACCTATATTTTGTCTACTTTTGTTTTTGTCATTAGTTTTAACTATGTTTCTTAAACATAAGTTTTTGTTTTTGCAAGTATTTTTATTACCTACTGTTATTGCAACTGCTTTATATAATTGTGTTTTGGATTATTACATAGTAAAATTTTTGGCTGACCATTTTAACTATAATGTTTCAGTATTACAAATGGATGTTCAGGGTTTAGTTAATGTTTTAGTCTGTTTATTTGTTGTATTTTTACACACATGGCGCTTTTCTAAAGAACGTTTCACACATTGGTTTACATATGTGTGTTCTCTTATAGCAGTTGCTTACACTTATTTTTATAGTGGTGACTTTTTGAGTTTGCTTGTTATGTTTTTATGTGCTATATCTAGTGATTGGTACATTGGTGCCATTGTTTTTAGGTTGTCACGTTTGATTATATTTTTTTCACCTGAAAGTGTATTTAGTGTTTTTGGTGATGTGAAACTCACTTTAGTTGTTTATTTAATTTGTGGTTATTTAGTTTGTACTTATTGGGGCATTTTGTATTGGTTCAATAGGTTTTTTAAATGTACTATGGGTGTTTATGATTTTAAGGTGAGTGCTGCTGAATTTAAATACATGGTTGCTAATGGACTTCATGCACCACATGGACCTTTTGATGCACTTTGGTTATCATTCAAATTACTTGGTATTGGTGGTGACCGTTGTATAAAAATTTCAACTGTCCAA
>Amsterdam_057_1ab_VIPR_ALG1_93004446_10013_10849_1_NA_Netherlands_Unknown_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >Amsterdam_496_1ab_VIPR_ALG1_93004453_9998_10834_1_NA_Netherlands_Unknown_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_DEN_2005_1062_PP1ab_VIPR_ALG1_380710266_9968_10804_1_2005_04_12_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_DEN_2005_193_PP1ab_VIPR_ALG1_380710224_9968_10804_1_2005_01_11_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_DEN_2005_1862_PP1ab_VIPR_ALG1_380710274_9968_10804_1_2005_11_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLFLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_DEN_2005_1876_PP1ab_VIPR_ALG1_380710282_9968_10804_1_2005_11_21_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_DEN_2005_232_PP1ab_VIPR_ALG1_380710232_9953_10789_1_2005_01_18_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_DEN_2005_235_PP1ab_VIPR_ALG1_380710240_9953_10789_1_2005_01_19_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_DEN_2005_347_PP1ab_VIPR_ALG1_380710256_9968_10804_1_2005_02_01_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_DEN_2005_271_PP1ab_VIPR_ALG1_380710248_9968_10804_1_2005_01_23_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_DEN_2008_16_PP1ab_VIPR_ALG1_380710208_9968_10804_1_2008_01_08_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLFLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_DEN_2009_14_PP1ab_VIPR_ALG1_380710192_9953_10789_1_2009_03_01_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_DEN_2009_15_PP1ab_VIPR_ALG1_380710200_9953_10789_1_2009_02_13_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFNVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_DEN_2009_20_PP1ab_VIPR_ALG1_380710216_9968_10804_1_2009_03_12_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLFLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_DEN_2009_9_PP1ab_VIPR_ALG1_380710184_9953_10789_1_2009_03_16_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_human_USA_838_9_1983_Pp1ab_VIPR_ALG1_530802111_9948_10784_1_1983_08_16_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_human_USA_0111_25_2001_Pp1ab_VIPR_ALG1_530802127_9933_10769_1_2001_11_21_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIVIFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_human_USA_8712_17_1987_Pp1ab_VIPR_ALG1_530802079_9939_10775_1_1987_12_16_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLILFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTIQ >NL63_human_USA_901_24_1990_Pp1ab_VIPR_ALG1_530802119_9948_10784_1_1990_01_05_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLACLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_human_USA_891_6_1989_Pp1ab_VIPR_ALG1_530802095_9948_10784_1_1989_01_05_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSIFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_human_USA_891_4_1989_Pp1ab_VIPR_ALG1_530802143_9948_10784_1_1989_01_03_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_human_USA_903_28_1990_Pp1ab_VIPR_ALG1_530802103_9948_10784_1_1990_03_21_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_human_USA_911_56_1991_Pp1ab_VIPR_ALG1_530802087_9948_10784_1_1991_01_24_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_human_USA_904_20_1990_Pp1ab_VIPR_ALG1_530802063_9948_10784_1_1990_04_26_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ >NL63_human_USA_905_25_1990_Pp1ab_VIPR_ALG1_530802135_9948_10784_1_1990_05_29_USA_Human_Human_coronavirus_NL63 SGKVIFGLKTMFLFSVFFTMFWAELFIYTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVLDYYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSLLVMFLCAISSDWYIGAIVFRLSRLIIFFSPESVFSVFGDVKLTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGDRCIKISTVQ
Reading sequence file /data//pss_subsets/NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63.result/original_alignment/codeml/fasta/NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63.result.1
Found 26 sequences of length 837
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 0.6%
Found 12 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0%100.0%
Using a window size of 80 with k as 1
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 14 polymorphic sites
**p-Value(s)**
----------
NSS: 1.00e+00 (1000 permutations)
Max Chi^2: 5.63e-01 (1000 permutations)
PHI (Permutation): 6.63e-01 (1000 permutations)
PHI (Normal): 2.54e-01
#NEXUS
[ID: 4530146734]
begin taxa;
dimensions ntax=26;
taxlabels
Amsterdam_057_1ab_VIPR_ALG1_93004446_10013_10849_1_NA_Netherlands_Unknown_Human_coronavirus_NL63
NL63_DEN_2005_271_PP1ab_VIPR_ALG1_380710248_9968_10804_1_2005_01_23_USA_Human_Human_coronavirus_NL63
NL63_DEN_2008_16_PP1ab_VIPR_ALG1_380710208_9968_10804_1_2008_01_08_USA_Human_Human_coronavirus_NL63
NL63_DEN_2009_14_PP1ab_VIPR_ALG1_380710192_9953_10789_1_2009_03_01_USA_Human_Human_coronavirus_NL63
NL63_DEN_2009_15_PP1ab_VIPR_ALG1_380710200_9953_10789_1_2009_02_13_USA_Human_Human_coronavirus_NL63
NL63_DEN_2009_20_PP1ab_VIPR_ALG1_380710216_9968_10804_1_2009_03_12_USA_Human_Human_coronavirus_NL63
NL63_DEN_2009_9_PP1ab_VIPR_ALG1_380710184_9953_10789_1_2009_03_16_USA_Human_Human_coronavirus_NL63
NL63_human_USA_838_9_1983_Pp1ab_VIPR_ALG1_530802111_9948_10784_1_1983_08_16_USA_Human_Human_coronavirus_NL63
NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63
NL63_human_USA_0111_25_2001_Pp1ab_VIPR_ALG1_530802127_9933_10769_1_2001_11_21_USA_Human_Human_coronavirus_NL63
NL63_human_USA_8712_17_1987_Pp1ab_VIPR_ALG1_530802079_9939_10775_1_1987_12_16_USA_Human_Human_coronavirus_NL63
Amsterdam_496_1ab_VIPR_ALG1_93004453_9998_10834_1_NA_Netherlands_Unknown_Human_coronavirus_NL63
NL63_human_USA_901_24_1990_Pp1ab_VIPR_ALG1_530802119_9948_10784_1_1990_01_05_USA_Human_Human_coronavirus_NL63
NL63_human_USA_891_6_1989_Pp1ab_VIPR_ALG1_530802095_9948_10784_1_1989_01_05_USA_Human_Human_coronavirus_NL63
NL63_human_USA_891_4_1989_Pp1ab_VIPR_ALG1_530802143_9948_10784_1_1989_01_03_USA_Human_Human_coronavirus_NL63
NL63_human_USA_903_28_1990_Pp1ab_VIPR_ALG1_530802103_9948_10784_1_1990_03_21_USA_Human_Human_coronavirus_NL63
NL63_human_USA_911_56_1991_Pp1ab_VIPR_ALG1_530802087_9948_10784_1_1991_01_24_USA_Human_Human_coronavirus_NL63
NL63_human_USA_904_20_1990_Pp1ab_VIPR_ALG1_530802063_9948_10784_1_1990_04_26_USA_Human_Human_coronavirus_NL63
NL63_human_USA_905_25_1990_Pp1ab_VIPR_ALG1_530802135_9948_10784_1_1990_05_29_USA_Human_Human_coronavirus_NL63
NL63_DEN_2005_1062_PP1ab_VIPR_ALG1_380710266_9968_10804_1_2005_04_12_USA_Human_Human_coronavirus_NL63
NL63_DEN_2005_193_PP1ab_VIPR_ALG1_380710224_9968_10804_1_2005_01_11_USA_Human_Human_coronavirus_NL63
NL63_DEN_2005_1862_PP1ab_VIPR_ALG1_380710274_9968_10804_1_2005_11_USA_Human_Human_coronavirus_NL63
NL63_DEN_2005_1876_PP1ab_VIPR_ALG1_380710282_9968_10804_1_2005_11_21_USA_Human_Human_coronavirus_NL63
NL63_DEN_2005_232_PP1ab_VIPR_ALG1_380710232_9953_10789_1_2005_01_18_USA_Human_Human_coronavirus_NL63
NL63_DEN_2005_235_PP1ab_VIPR_ALG1_380710240_9953_10789_1_2005_01_19_USA_Human_Human_coronavirus_NL63
NL63_DEN_2005_347_PP1ab_VIPR_ALG1_380710256_9968_10804_1_2005_02_01_USA_Human_Human_coronavirus_NL63
;
end;
begin trees;
translate
1 Amsterdam_057_1ab_VIPR_ALG1_93004446_10013_10849_1_NA_Netherlands_Unknown_Human_coronavirus_NL63,
2 NL63_DEN_2005_271_PP1ab_VIPR_ALG1_380710248_9968_10804_1_2005_01_23_USA_Human_Human_coronavirus_NL63,
3 NL63_DEN_2008_16_PP1ab_VIPR_ALG1_380710208_9968_10804_1_2008_01_08_USA_Human_Human_coronavirus_NL63,
4 NL63_DEN_2009_14_PP1ab_VIPR_ALG1_380710192_9953_10789_1_2009_03_01_USA_Human_Human_coronavirus_NL63,
5 NL63_DEN_2009_15_PP1ab_VIPR_ALG1_380710200_9953_10789_1_2009_02_13_USA_Human_Human_coronavirus_NL63,
6 NL63_DEN_2009_20_PP1ab_VIPR_ALG1_380710216_9968_10804_1_2009_03_12_USA_Human_Human_coronavirus_NL63,
7 NL63_DEN_2009_9_PP1ab_VIPR_ALG1_380710184_9953_10789_1_2009_03_16_USA_Human_Human_coronavirus_NL63,
8 NL63_human_USA_838_9_1983_Pp1ab_VIPR_ALG1_530802111_9948_10784_1_1983_08_16_USA_Human_Human_coronavirus_NL63,
9 NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63,
10 NL63_human_USA_0111_25_2001_Pp1ab_VIPR_ALG1_530802127_9933_10769_1_2001_11_21_USA_Human_Human_coronavirus_NL63,
11 NL63_human_USA_8712_17_1987_Pp1ab_VIPR_ALG1_530802079_9939_10775_1_1987_12_16_USA_Human_Human_coronavirus_NL63,
12 Amsterdam_496_1ab_VIPR_ALG1_93004453_9998_10834_1_NA_Netherlands_Unknown_Human_coronavirus_NL63,
13 NL63_human_USA_901_24_1990_Pp1ab_VIPR_ALG1_530802119_9948_10784_1_1990_01_05_USA_Human_Human_coronavirus_NL63,
14 NL63_human_USA_891_6_1989_Pp1ab_VIPR_ALG1_530802095_9948_10784_1_1989_01_05_USA_Human_Human_coronavirus_NL63,
15 NL63_human_USA_891_4_1989_Pp1ab_VIPR_ALG1_530802143_9948_10784_1_1989_01_03_USA_Human_Human_coronavirus_NL63,
16 NL63_human_USA_903_28_1990_Pp1ab_VIPR_ALG1_530802103_9948_10784_1_1990_03_21_USA_Human_Human_coronavirus_NL63,
17 NL63_human_USA_911_56_1991_Pp1ab_VIPR_ALG1_530802087_9948_10784_1_1991_01_24_USA_Human_Human_coronavirus_NL63,
18 NL63_human_USA_904_20_1990_Pp1ab_VIPR_ALG1_530802063_9948_10784_1_1990_04_26_USA_Human_Human_coronavirus_NL63,
19 NL63_human_USA_905_25_1990_Pp1ab_VIPR_ALG1_530802135_9948_10784_1_1990_05_29_USA_Human_Human_coronavirus_NL63,
20 NL63_DEN_2005_1062_PP1ab_VIPR_ALG1_380710266_9968_10804_1_2005_04_12_USA_Human_Human_coronavirus_NL63,
21 NL63_DEN_2005_193_PP1ab_VIPR_ALG1_380710224_9968_10804_1_2005_01_11_USA_Human_Human_coronavirus_NL63,
22 NL63_DEN_2005_1862_PP1ab_VIPR_ALG1_380710274_9968_10804_1_2005_11_USA_Human_Human_coronavirus_NL63,
23 NL63_DEN_2005_1876_PP1ab_VIPR_ALG1_380710282_9968_10804_1_2005_11_21_USA_Human_Human_coronavirus_NL63,
24 NL63_DEN_2005_232_PP1ab_VIPR_ALG1_380710232_9953_10789_1_2005_01_18_USA_Human_Human_coronavirus_NL63,
25 NL63_DEN_2005_235_PP1ab_VIPR_ALG1_380710240_9953_10789_1_2005_01_19_USA_Human_Human_coronavirus_NL63,
26 NL63_DEN_2005_347_PP1ab_VIPR_ALG1_380710256_9968_10804_1_2005_02_01_USA_Human_Human_coronavirus_NL63
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:2.743757e-04,20:2.909748e-04,21:6.910245e-04,23:2.805491e-04,(8:2.837192e-04,11:1.989040e-03,(13:6.808010e-04,14:6.764057e-04,15:2.861148e-04,(16:3.017169e-04,17:3.042514e-04)0.968:6.575010e-04,18:2.911742e-04,19:2.826839e-04)0.956:6.843061e-04)1.000:2.331624e-03,(4:1.116476e-03,5:7.073368e-04,7:2.920274e-04,10:2.890456e-04,12:2.918536e-04,24:2.883383e-04,25:3.036153e-04)0.999:1.113409e-03,(2:2.902620e-04,26:2.922923e-04)0.976:6.890974e-04,((3:2.910658e-04,6:6.925566e-04,22:2.896480e-04)0.997:7.034044e-04,9:2.962653e-04)0.965:6.956017e-04);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:2.743757e-04,20:2.909748e-04,21:6.910245e-04,23:2.805491e-04,(8:2.837192e-04,11:1.989040e-03,(13:6.808010e-04,14:6.764057e-04,15:2.861148e-04,(16:3.017169e-04,17:3.042514e-04):6.575010e-04,18:2.911742e-04,19:2.826839e-04):6.843061e-04):2.331624e-03,(4:1.116476e-03,5:7.073368e-04,7:2.920274e-04,10:2.890456e-04,12:2.918536e-04,24:2.883383e-04,25:3.036153e-04):1.113409e-03,(2:2.902620e-04,26:2.922923e-04):6.890974e-04,((3:2.910658e-04,6:6.925566e-04,22:2.896480e-04):7.034044e-04,9:2.962653e-04):6.956017e-04);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1245.09 -1262.36
2 -1244.65 -1264.30
--------------------------------------
TOTAL -1244.84 -1263.74
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.030732 0.000050 0.018454 0.045844 0.030110 1201.96 1287.90 1.000
r(A<->C){all} 0.057318 0.002968 0.000099 0.168631 0.040671 223.82 255.03 1.000
r(A<->G){all} 0.315890 0.007947 0.140527 0.481337 0.311583 279.29 287.16 1.000
r(A<->T){all} 0.100707 0.002260 0.023162 0.195861 0.093045 357.29 377.40 1.002
r(C<->G){all} 0.058094 0.002829 0.000112 0.164934 0.042517 217.92 237.55 1.002
r(C<->T){all} 0.399493 0.009361 0.212513 0.576424 0.394017 250.55 270.01 1.001
r(G<->T){all} 0.068499 0.001500 0.008707 0.145823 0.061764 379.90 430.13 1.001
pi(A){all} 0.240680 0.000215 0.211198 0.268821 0.240145 992.25 1051.35 1.000
pi(C){all} 0.118561 0.000115 0.097590 0.139653 0.118070 1032.60 1051.76 1.000
pi(G){all} 0.179613 0.000169 0.154288 0.204536 0.179884 1103.89 1108.01 1.000
pi(T){all} 0.461146 0.000283 0.428555 0.493103 0.461157 983.22 987.20 1.000
alpha{1,2} 0.448037 0.399503 0.000653 1.632841 0.214891 904.78 923.38 1.001
alpha{3} 1.480502 1.334148 0.003359 3.689984 1.189478 1013.64 1140.40 1.005
pinvar{all} 0.551921 0.052222 0.080379 0.887493 0.595825 460.25 540.65 1.010
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/NL63_human_USA_012_31_2001_Pp1ab_VIPR_ALG1_530802071_9948_10784_1_2001_02_23_USA_Human_Human_coronavirus_NL63.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 26 ls = 279
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 30 30 30 30 31 30 | Ser TCT 3 3 3 3 3 3 | Tyr TAT 12 12 12 12 12 12 | Cys TGT 9 9 9 9 9 9
TTC 4 4 4 4 4 4 | TCC 0 0 0 0 0 0 | TAC 4 4 4 4 4 4 | TGC 0 0 0 0 0 0
Leu TTA 16 16 16 16 17 16 | TCA 6 6 6 6 6 6 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 12 12 12 12 11 12 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 8 8 8 8 8 8
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 9 9 9 9 9 9 | Pro CCT 5 5 5 5 5 5 | His CAT 5 5 5 5 5 5 | Arg CGT 3 3 3 3 3 3
CTC 1 1 1 1 1 1 | CCC 0 0 0 0 0 0 | CAC 1 1 1 1 1 1 | CGC 1 1 1 1 1 1
CTA 2 2 2 2 2 2 | CCA 1 1 1 1 1 1 | Gln CAA 3 3 3 3 3 3 | CGA 0 0 0 0 0 0
CTG 0 0 0 0 0 0 | CCG 0 0 0 0 0 0 | CAG 1 1 1 1 1 1 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 11 11 11 11 11 11 | Thr ACT 9 9 9 9 9 9 | Asn AAT 5 5 5 5 5 5 | Ser AGT 7 7 7 7 7 7
ATC 0 0 0 0 0 0 | ACC 0 0 0 0 0 0 | AAC 3 3 3 3 3 3 | AGC 1 1 1 1 1 1
ATA 8 8 8 8 8 8 | ACA 7 7 7 7 7 7 | Lys AAA 9 9 9 9 9 9 | Arg AGA 0 0 0 0 0 0
Met ATG 7 7 7 7 7 7 | ACG 0 0 0 0 0 0 | AAG 3 3 3 3 3 3 | AGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 19 19 19 20 18 19 | Ala GCT 7 7 7 7 7 7 | Asp GAT 6 6 6 6 6 6 | Gly GGT 11 11 11 11 11 11
GTC 2 1 2 2 2 2 | GCC 1 1 1 1 1 1 | GAC 3 3 3 3 3 3 | GGC 1 1 1 1 1 1
GTA 6 7 6 6 6 6 | GCA 5 5 5 5 5 5 | Glu GAA 4 4 4 4 4 4 | GGA 2 2 2 2 2 2
GTG 4 4 4 3 4 4 | GCG 0 0 0 0 0 0 | GAG 0 0 0 0 0 0 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 30 30 30 30 31 31 | Ser TCT 3 3 3 3 3 3 | Tyr TAT 12 12 12 12 12 12 | Cys TGT 9 9 9 9 9 9
TTC 4 4 4 4 4 4 | TCC 0 0 0 0 0 0 | TAC 4 4 4 4 4 4 | TGC 0 0 0 0 0 0
Leu TTA 16 16 16 16 17 16 | TCA 6 6 6 6 6 6 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 12 12 12 12 11 12 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 8 8 8 8 8 8
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 9 9 9 9 9 9 | Pro CCT 5 5 5 5 5 5 | His CAT 5 5 5 5 5 5 | Arg CGT 3 3 3 3 3 3
CTC 1 1 1 1 1 1 | CCC 0 0 0 0 0 0 | CAC 1 1 1 1 1 1 | CGC 1 1 1 1 1 1
CTA 2 2 2 2 2 2 | CCA 1 1 1 1 1 1 | Gln CAA 3 3 3 3 3 3 | CGA 0 0 0 0 0 0
CTG 0 0 0 0 0 0 | CCG 0 0 0 0 0 0 | CAG 1 1 1 1 1 1 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 11 11 10 10 11 10 | Thr ACT 9 9 9 9 9 9 | Asn AAT 5 5 5 5 5 5 | Ser AGT 7 7 7 7 7 7
ATC 0 0 1 1 0 0 | ACC 0 0 0 0 0 0 | AAC 3 3 3 3 3 3 | AGC 1 1 1 1 1 1
ATA 8 8 8 8 8 8 | ACA 7 7 7 7 7 7 | Lys AAA 9 9 9 9 9 9 | Arg AGA 0 0 0 0 0 0
Met ATG 7 7 7 7 7 7 | ACG 0 0 0 0 0 0 | AAG 3 3 3 3 3 3 | AGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 19 19 19 19 18 19 | Ala GCT 7 7 7 7 7 7 | Asp GAT 6 6 6 6 6 6 | Gly GGT 11 11 11 11 11 11
GTC 1 1 2 2 2 1 | GCC 1 1 1 1 1 1 | GAC 3 3 3 3 3 3 | GGC 1 1 1 1 1 1
GTA 7 7 6 6 6 6 | GCA 5 5 5 5 5 5 | Glu GAA 4 4 4 4 4 4 | GGA 2 2 2 2 2 2
GTG 4 4 4 4 4 5 | GCG 0 0 0 0 0 0 | GAG 0 0 0 0 0 0 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 30 31 30 30 30 30 | Ser TCT 3 3 3 3 3 3 | Tyr TAT 12 12 12 12 12 12 | Cys TGT 9 8 9 9 9 9
TTC 4 4 4 5 4 4 | TCC 0 0 0 0 0 0 | TAC 4 4 4 4 4 4 | TGC 0 1 0 0 0 0
Leu TTA 16 17 16 17 17 16 | TCA 6 6 6 6 6 6 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 12 11 12 12 11 12 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 8 8 8 8 8 8
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 9 9 9 8 9 9 | Pro CCT 5 5 5 5 5 5 | His CAT 5 5 5 5 5 5 | Arg CGT 3 3 3 3 3 3
CTC 1 1 1 2 1 1 | CCC 0 0 0 0 0 0 | CAC 1 1 1 1 1 1 | CGC 1 1 1 1 1 1
CTA 2 2 2 1 2 2 | CCA 1 1 1 1 1 1 | Gln CAA 3 3 3 3 3 3 | CGA 0 0 0 0 0 0
CTG 0 0 0 0 0 0 | CCG 0 0 0 0 0 0 | CAG 1 1 1 1 1 1 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 11 11 11 10 11 11 | Thr ACT 9 9 9 9 9 9 | Asn AAT 6 5 5 5 5 5 | Ser AGT 6 7 7 7 7 7
ATC 0 0 0 0 0 0 | ACC 0 0 0 0 0 0 | AAC 3 3 3 3 3 3 | AGC 1 1 1 1 1 1
ATA 8 8 8 9 8 8 | ACA 7 7 7 7 7 7 | Lys AAA 9 9 9 9 9 9 | Arg AGA 0 0 0 0 0 0
Met ATG 7 7 7 7 7 7 | ACG 0 0 0 0 0 0 | AAG 3 3 3 3 3 3 | AGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 19 18 19 19 19 19 | Ala GCT 7 7 7 7 7 7 | Asp GAT 6 6 6 6 6 6 | Gly GGT 11 11 11 11 11 11
GTC 1 2 1 2 2 1 | GCC 1 1 1 1 1 1 | GAC 3 3 3 3 3 3 | GGC 1 1 1 1 1 1
GTA 7 6 7 5 6 7 | GCA 5 5 5 5 5 5 | Glu GAA 4 4 4 4 4 4 | GGA 2 2 2 2 2 2
GTG 4 4 4 4 4 4 | GCG 0 0 0 0 0 0 | GAG 0 0 0 0 0 0 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 30 30 30 30 30 30 | Ser TCT 3 3 3 3 3 3 | Tyr TAT 12 12 12 12 12 12 | Cys TGT 9 9 9 9 9 9
TTC 5 5 5 5 5 5 | TCC 0 0 0 0 0 0 | TAC 4 4 4 4 4 4 | TGC 0 0 0 0 0 0
Leu TTA 18 18 18 18 18 18 | TCA 6 6 6 6 6 6 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 12 11 11 11 11 11 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 8 8 8 8 8 8
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 8 8 8 8 8 8 | Pro CCT 5 5 5 5 5 5 | His CAT 5 5 5 5 5 5 | Arg CGT 3 3 3 3 3 3
CTC 2 2 2 2 2 2 | CCC 0 0 0 0 0 0 | CAC 1 1 1 1 1 1 | CGC 1 1 1 1 1 1
CTA 1 1 1 1 1 1 | CCA 1 1 1 1 1 1 | Gln CAA 3 3 3 3 3 3 | CGA 0 0 0 0 0 0
CTG 0 0 0 0 0 0 | CCG 0 0 0 0 0 0 | CAG 1 1 1 1 1 1 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 10 10 11 10 10 10 | Thr ACT 9 9 9 9 9 9 | Asn AAT 5 5 5 5 5 5 | Ser AGT 7 7 7 7 7 7
ATC 1 0 0 0 0 0 | ACC 0 0 0 0 0 0 | AAC 3 3 3 3 3 3 | AGC 1 1 1 1 1 1
ATA 8 9 9 9 9 9 | ACA 7 7 7 7 7 7 | Lys AAA 9 9 9 9 9 9 | Arg AGA 0 0 0 0 0 0
Met ATG 7 7 7 7 7 7 | ACG 0 0 0 0 0 0 | AAG 3 3 3 3 3 3 | AGG 2 2 2 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 19 19 18 19 19 19 | Ala GCT 7 7 7 7 7 7 | Asp GAT 6 6 6 6 7 7 | Gly GGT 11 11 11 11 11 11
GTC 1 1 2 2 2 2 | GCC 1 2 1 1 1 1 | GAC 3 3 3 3 2 2 | GGC 1 1 1 1 1 1
GTA 5 5 5 5 5 5 | GCA 5 5 5 5 5 5 | Glu GAA 4 4 4 4 4 4 | GGA 2 2 2 2 2 2
GTG 4 4 4 4 4 4 | GCG 0 0 0 0 0 0 | GAG 0 0 0 0 0 0 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
----------------------------------------------------------------------
Phe TTT 30 30 | Ser TCT 3 3 | Tyr TAT 12 12 | Cys TGT 9 9
TTC 5 5 | TCC 0 0 | TAC 4 4 | TGC 0 0
Leu TTA 18 18 | TCA 6 6 | *** TAA 0 0 | *** TGA 0 0
TTG 11 11 | TCG 0 0 | TAG 0 0 | Trp TGG 8 8
----------------------------------------------------------------------
Leu CTT 8 8 | Pro CCT 5 5 | His CAT 5 5 | Arg CGT 3 3
CTC 2 2 | CCC 0 0 | CAC 1 1 | CGC 1 1
CTA 1 1 | CCA 1 1 | Gln CAA 3 3 | CGA 0 0
CTG 0 0 | CCG 0 0 | CAG 1 1 | CGG 0 0
----------------------------------------------------------------------
Ile ATT 10 10 | Thr ACT 9 9 | Asn AAT 5 5 | Ser AGT 7 7
ATC 0 0 | ACC 0 0 | AAC 3 3 | AGC 1 1
ATA 9 9 | ACA 7 7 | Lys AAA 9 9 | Arg AGA 0 0
Met ATG 7 7 | ACG 0 0 | AAG 3 3 | AGG 2 2
----------------------------------------------------------------------
Val GTT 19 19 | Ala GCT 7 7 | Asp GAT 6 6 | Gly GGT 11 11
GTC 2 2 | GCC 1 1 | GAC 3 3 | GGC 1 1
GTA 5 5 | GCA 5 5 | Glu GAA 4 4 | GGA 2 2
GTG 4 4 | GCG 0 0 | GAG 0 0 | GGG 0 0
----------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C1
position 1: T:0.37276 C:0.11470 A:0.25806 G:0.25448
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.54122 C:0.07885 A:0.24731 G:0.13262
Average T:0.46117 C:0.11708 A:0.23895 G:0.18280
#2: C2
position 1: T:0.37276 C:0.11470 A:0.25806 G:0.25448
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.54122 C:0.07527 A:0.25090 G:0.13262
Average T:0.46117 C:0.11589 A:0.24014 G:0.18280
#3: C3
position 1: T:0.37276 C:0.11470 A:0.25806 G:0.25448
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.54122 C:0.07885 A:0.24731 G:0.13262
Average T:0.46117 C:0.11708 A:0.23895 G:0.18280
#4: C4
position 1: T:0.37276 C:0.11470 A:0.25806 G:0.25448
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.54480 C:0.07885 A:0.24731 G:0.12903
Average T:0.46237 C:0.11708 A:0.23895 G:0.18160
#5: C5
position 1: T:0.37634 C:0.11470 A:0.25806 G:0.25090
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.54122 C:0.07885 A:0.25090 G:0.12903
Average T:0.46237 C:0.11708 A:0.24014 G:0.18041
#6: C6
position 1: T:0.37276 C:0.11470 A:0.25806 G:0.25448
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.54122 C:0.07885 A:0.24731 G:0.13262
Average T:0.46117 C:0.11708 A:0.23895 G:0.18280
#7: C7
position 1: T:0.37276 C:0.11470 A:0.25806 G:0.25448
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.54122 C:0.07527 A:0.25090 G:0.13262
Average T:0.46117 C:0.11589 A:0.24014 G:0.18280
#8: C8
position 1: T:0.37276 C:0.11470 A:0.25806 G:0.25448
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.54122 C:0.07527 A:0.25090 G:0.13262
Average T:0.46117 C:0.11589 A:0.24014 G:0.18280
#9: C9
position 1: T:0.37276 C:0.11470 A:0.25806 G:0.25448
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.53763 C:0.08244 A:0.24731 G:0.13262
Average T:0.45998 C:0.11828 A:0.23895 G:0.18280
#10: C10
position 1: T:0.37276 C:0.11470 A:0.25806 G:0.25448
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.53763 C:0.08244 A:0.24731 G:0.13262
Average T:0.45998 C:0.11828 A:0.23895 G:0.18280
#11: C11
position 1: T:0.37634 C:0.11470 A:0.25806 G:0.25090
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.54122 C:0.07885 A:0.25090 G:0.12903
Average T:0.46237 C:0.11708 A:0.24014 G:0.18041
#12: C12
position 1: T:0.37634 C:0.11470 A:0.25448 G:0.25448
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.54122 C:0.07527 A:0.24731 G:0.13620
Average T:0.46237 C:0.11589 A:0.23775 G:0.18399
#13: C13
position 1: T:0.37276 C:0.11470 A:0.25806 G:0.25448
position 2: T:0.46953 C:0.15771 A:0.21505 G:0.15771
position 3: T:0.54122 C:0.07527 A:0.25090 G:0.13262
Average T:0.46117 C:0.11589 A:0.24134 G:0.18160
#14: C14
position 1: T:0.37634 C:0.11470 A:0.25806 G:0.25090
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.53763 C:0.08244 A:0.25090 G:0.12903
Average T:0.46117 C:0.11828 A:0.24014 G:0.18041
#15: C15
position 1: T:0.37276 C:0.11470 A:0.25806 G:0.25448
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.54122 C:0.07527 A:0.25090 G:0.13262
Average T:0.46117 C:0.11589 A:0.24014 G:0.18280
#16: C16
position 1: T:0.37993 C:0.11111 A:0.25806 G:0.25090
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.53405 C:0.08602 A:0.24731 G:0.13262
Average T:0.46117 C:0.11828 A:0.23895 G:0.18160
#17: C17
position 1: T:0.37276 C:0.11470 A:0.25806 G:0.25448
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.54122 C:0.07885 A:0.25090 G:0.12903
Average T:0.46117 C:0.11708 A:0.24014 G:0.18160
#18: C18
position 1: T:0.37276 C:0.11470 A:0.25806 G:0.25448
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.54122 C:0.07527 A:0.25090 G:0.13262
Average T:0.46117 C:0.11589 A:0.24014 G:0.18280
#19: C19
position 1: T:0.38351 C:0.11111 A:0.25806 G:0.24731
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.53405 C:0.08602 A:0.24731 G:0.13262
Average T:0.46237 C:0.11828 A:0.23895 G:0.18041
#20: C20
position 1: T:0.37993 C:0.11111 A:0.25806 G:0.25090
position 2: T:0.46595 C:0.16129 A:0.21147 G:0.16129
position 3: T:0.53405 C:0.08602 A:0.25090 G:0.12903
Average T:0.45998 C:0.11947 A:0.24014 G:0.18041
#21: C21
position 1: T:0.37993 C:0.11111 A:0.26165 G:0.24731
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.53405 C:0.08602 A:0.25090 G:0.12903
Average T:0.46117 C:0.11828 A:0.24134 G:0.17921
#22: C22
position 1: T:0.37993 C:0.11111 A:0.25806 G:0.25090
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.53405 C:0.08602 A:0.25090 G:0.12903
Average T:0.46117 C:0.11828 A:0.24014 G:0.18041
#23: C23
position 1: T:0.37993 C:0.11111 A:0.25806 G:0.25090
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.53763 C:0.08244 A:0.25090 G:0.12903
Average T:0.46237 C:0.11708 A:0.24014 G:0.18041
#24: C24
position 1: T:0.37993 C:0.11111 A:0.25806 G:0.25090
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.53763 C:0.08244 A:0.25090 G:0.12903
Average T:0.46237 C:0.11708 A:0.24014 G:0.18041
#25: C25
position 1: T:0.37993 C:0.11111 A:0.25806 G:0.25090
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.53405 C:0.08602 A:0.25090 G:0.12903
Average T:0.46117 C:0.11828 A:0.24014 G:0.18041
#26: C26
position 1: T:0.37993 C:0.11111 A:0.25806 G:0.25090
position 2: T:0.46953 C:0.15771 A:0.21147 G:0.16129
position 3: T:0.53405 C:0.08602 A:0.25090 G:0.12903
Average T:0.46117 C:0.11828 A:0.24014 G:0.18041
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 784 | Ser S TCT 78 | Tyr Y TAT 312 | Cys C TGT 233
TTC 113 | TCC 0 | TAC 104 | TGC 1
Leu L TTA 437 | TCA 156 | *** * TAA 0 | *** * TGA 0
TTG 301 | TCG 0 | TAG 0 | Trp W TGG 208
------------------------------------------------------------------------------
Leu L CTT 225 | Pro P CCT 130 | His H CAT 130 | Arg R CGT 78
CTC 35 | CCC 0 | CAC 26 | CGC 26
CTA 43 | CCA 26 | Gln Q CAA 78 | CGA 0
CTG 0 | CCG 0 | CAG 26 | CGG 0
------------------------------------------------------------------------------
Ile I ATT 275 | Thr T ACT 234 | Asn N AAT 131 | Ser S AGT 181
ATC 3 | ACC 0 | AAC 78 | AGC 26
ATA 216 | ACA 182 | Lys K AAA 234 | Arg R AGA 0
Met M ATG 182 | ACG 0 | AAG 78 | AGG 52
------------------------------------------------------------------------------
Val V GTT 491 | Ala A GCT 182 | Asp D GAT 158 | Gly G GGT 286
GTC 43 | GCC 27 | GAC 76 | GGC 26
GTA 153 | GCA 130 | Glu E GAA 104 | GGA 52
GTG 104 | GCG 0 | GAG 0 | GGG 0
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.37593 C:0.11345 A:0.25806 G:0.25255
position 2: T:0.46940 C:0.15784 A:0.21161 G:0.16115
position 3: T:0.53874 C:0.08051 A:0.24966 G:0.13110
Average T:0.46135 C:0.11727 A:0.23978 G:0.18160
Model 1: NearlyNeutral (2 categories)
TREE # 1: (1, 3, 4, 6, (16, 19, (20, 21, 22, (23, 24), 25, 26)), (12, 13, 15, 18, 2, 7, 8), (10, 9), ((11, 14, 5), 17)); MP score: 23
lnL(ntime: 33 np: 36): -1189.294580 +0.000000
27..1 27..3 27..4 27..6 27..28 28..16 28..19 28..29 29..20 29..21 29..22 29..30 30..23 30..24 29..25 29..26 27..31 31..12 31..13 31..15 31..18 31..2 31..7 31..8 27..32 32..10 32..9 27..33 33..34 34..11 34..14 34..5 33..17
0.000004 0.000004 0.003850 0.000004 0.019539 0.000004 0.015451 0.003808 0.003825 0.003813 0.000004 0.003816 0.000004 0.000004 0.000004 0.000004 0.007684 0.007688 0.003803 0.000004 0.000004 0.000004 0.000004 0.000004 0.003823 0.000004 0.000004 0.003839 0.003870 0.000004 0.003842 0.000004 0.000004 4.340822 0.882418 0.000001
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.088728
(1: 0.000004, 3: 0.000004, 4: 0.003850, 6: 0.000004, (16: 0.000004, 19: 0.015451, (20: 0.003825, 21: 0.003813, 22: 0.000004, (23: 0.000004, 24: 0.000004): 0.003816, 25: 0.000004, 26: 0.000004): 0.003808): 0.019539, (12: 0.007688, 13: 0.003803, 15: 0.000004, 18: 0.000004, 2: 0.000004, 7: 0.000004, 8: 0.000004): 0.007684, (10: 0.000004, 9: 0.000004): 0.003823, ((11: 0.000004, 14: 0.003842, 5: 0.000004): 0.003870, 17: 0.000004): 0.003839);
(C1: 0.000004, C3: 0.000004, C4: 0.003850, C6: 0.000004, (C16: 0.000004, C19: 0.015451, (C20: 0.003825, C21: 0.003813, C22: 0.000004, (C23: 0.000004, C24: 0.000004): 0.003816, C25: 0.000004, C26: 0.000004): 0.003808): 0.019539, (C12: 0.007688, C13: 0.003803, C15: 0.000004, C18: 0.000004, C2: 0.000004, C7: 0.000004, C8: 0.000004): 0.007684, (C10: 0.000004, C9: 0.000004): 0.003823, ((C11: 0.000004, C14: 0.003842, C5: 0.000004): 0.003870, C17: 0.000004): 0.003839);
Detailed output identifying parameters
kappa (ts/tv) = 4.34082
MLEs of dN/dS (w) for site classes (K=2)
p: 0.88242 0.11758
w: 0.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
27..1 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
27..3 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
27..4 0.004 680.1 156.9 0.1176 0.0005 0.0045 0.4 0.7
27..6 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
27..28 0.020 680.1 156.9 0.1176 0.0027 0.0230 1.8 3.6
28..16 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
28..19 0.015 680.1 156.9 0.1176 0.0021 0.0182 1.5 2.9
28..29 0.004 680.1 156.9 0.1176 0.0005 0.0045 0.4 0.7
29..20 0.004 680.1 156.9 0.1176 0.0005 0.0045 0.4 0.7
29..21 0.004 680.1 156.9 0.1176 0.0005 0.0045 0.4 0.7
29..22 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
29..30 0.004 680.1 156.9 0.1176 0.0005 0.0045 0.4 0.7
30..23 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
30..24 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
29..25 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
29..26 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
27..31 0.008 680.1 156.9 0.1176 0.0011 0.0090 0.7 1.4
31..12 0.008 680.1 156.9 0.1176 0.0011 0.0091 0.7 1.4
31..13 0.004 680.1 156.9 0.1176 0.0005 0.0045 0.4 0.7
31..15 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
31..18 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
31..2 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
31..7 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
31..8 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
27..32 0.004 680.1 156.9 0.1176 0.0005 0.0045 0.4 0.7
32..10 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
32..9 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
27..33 0.004 680.1 156.9 0.1176 0.0005 0.0045 0.4 0.7
33..34 0.004 680.1 156.9 0.1176 0.0005 0.0046 0.4 0.7
34..11 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
34..14 0.004 680.1 156.9 0.1176 0.0005 0.0045 0.4 0.7
34..5 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
33..17 0.000 680.1 156.9 0.1176 0.0000 0.0000 0.0 0.0
Time used: 1:11
Model 2: PositiveSelection (3 categories)
TREE # 1: (1, 3, 4, 6, (16, 19, (20, 21, 22, (23, 24), 25, 26)), (12, 13, 15, 18, 2, 7, 8), (10, 9), ((11, 14, 5), 17)); MP score: 23
lnL(ntime: 33 np: 38): -1188.623994 +0.000000
27..1 27..3 27..4 27..6 27..28 28..16 28..19 28..29 29..20 29..21 29..22 29..30 30..23 30..24 29..25 29..26 27..31 31..12 31..13 31..15 31..18 31..2 31..7 31..8 27..32 32..10 32..9 27..33 33..34 34..11 34..14 34..5 33..17
0.000004 0.000004 0.003894 0.000004 0.020124 0.000004 0.015809 0.003848 0.003865 0.003852 0.000004 0.003855 0.000004 0.000004 0.000004 0.000004 0.007713 0.007713 0.003771 0.000004 0.000004 0.000004 0.000004 0.000004 0.003868 0.000004 0.000004 0.003884 0.003952 0.000004 0.003891 0.000004 0.000004 4.606659 0.939707 0.000008 0.000001 2.594018
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.090113
(1: 0.000004, 3: 0.000004, 4: 0.003894, 6: 0.000004, (16: 0.000004, 19: 0.015809, (20: 0.003865, 21: 0.003852, 22: 0.000004, (23: 0.000004, 24: 0.000004): 0.003855, 25: 0.000004, 26: 0.000004): 0.003848): 0.020124, (12: 0.007713, 13: 0.003771, 15: 0.000004, 18: 0.000004, 2: 0.000004, 7: 0.000004, 8: 0.000004): 0.007713, (10: 0.000004, 9: 0.000004): 0.003868, ((11: 0.000004, 14: 0.003891, 5: 0.000004): 0.003952, 17: 0.000004): 0.003884);
(C1: 0.000004, C3: 0.000004, C4: 0.003894, C6: 0.000004, (C16: 0.000004, C19: 0.015809, (C20: 0.003865, C21: 0.003852, C22: 0.000004, (C23: 0.000004, C24: 0.000004): 0.003855, C25: 0.000004, C26: 0.000004): 0.003848): 0.020124, (C12: 0.007713, C13: 0.003771, C15: 0.000004, C18: 0.000004, C2: 0.000004, C7: 0.000004, C8: 0.000004): 0.007713, (C10: 0.000004, C9: 0.000004): 0.003868, ((C11: 0.000004, C14: 0.003891, C5: 0.000004): 0.003952, C17: 0.000004): 0.003884);
Detailed output identifying parameters
kappa (ts/tv) = 4.60666
MLEs of dN/dS (w) for site classes (K=3)
p: 0.93971 0.00001 0.06029
w: 0.00000 1.00000 2.59402
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
27..1 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
27..3 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
27..4 0.004 678.9 158.1 0.1564 0.0006 0.0041 0.4 0.6
27..6 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
27..28 0.020 678.9 158.1 0.1564 0.0033 0.0212 2.3 3.4
28..16 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
28..19 0.016 678.9 158.1 0.1564 0.0026 0.0167 1.8 2.6
28..29 0.004 678.9 158.1 0.1564 0.0006 0.0041 0.4 0.6
29..20 0.004 678.9 158.1 0.1564 0.0006 0.0041 0.4 0.6
29..21 0.004 678.9 158.1 0.1564 0.0006 0.0041 0.4 0.6
29..22 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
29..30 0.004 678.9 158.1 0.1564 0.0006 0.0041 0.4 0.6
30..23 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
30..24 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
29..25 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
29..26 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
27..31 0.008 678.9 158.1 0.1564 0.0013 0.0081 0.9 1.3
31..12 0.008 678.9 158.1 0.1564 0.0013 0.0081 0.9 1.3
31..13 0.004 678.9 158.1 0.1564 0.0006 0.0040 0.4 0.6
31..15 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
31..18 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
31..2 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
31..7 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
31..8 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
27..32 0.004 678.9 158.1 0.1564 0.0006 0.0041 0.4 0.6
32..10 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
32..9 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
27..33 0.004 678.9 158.1 0.1564 0.0006 0.0041 0.4 0.6
33..34 0.004 678.9 158.1 0.1564 0.0007 0.0042 0.4 0.7
34..11 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
34..14 0.004 678.9 158.1 0.1564 0.0006 0.0041 0.4 0.6
34..5 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
33..17 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
16 V 1.000** 2.594
52 V 1.000** 2.594
113 V 1.000** 2.594
182 V 1.000** 2.594
183 I 1.000** 2.594
191 S 1.000** 2.594
278 V 1.000** 2.594
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
182 V 0.830 3.962 +- 2.548
183 I 0.779 3.738 +- 2.554
278 V 0.539 2.771 +- 2.770
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 0.953 0.046 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.174 0.182 0.169 0.139 0.107 0.079 0.057 0.041 0.030 0.022
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.090
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.012 0.080 0.810
sum of density on p0-p1 = 1.000000
Time used: 3:14
Model 7: beta (10 categories)
TREE # 1: (1, 3, 4, 6, (16, 19, (20, 21, 22, (23, 24), 25, 26)), (12, 13, 15, 18, 2, 7, 8), (10, 9), ((11, 14, 5), 17)); MP score: 23
lnL(ntime: 33 np: 36): -1189.361587 +0.000000
27..1 27..3 27..4 27..6 27..28 28..16 28..19 28..29 29..20 29..21 29..22 29..30 30..23 30..24 29..25 29..26 27..31 31..12 31..13 31..15 31..18 31..2 31..7 31..8 27..32 32..10 32..9 27..33 33..34 34..11 34..14 34..5 33..17
0.000004 0.000004 0.003824 0.000004 0.019409 0.000004 0.015340 0.003778 0.003797 0.003784 0.000004 0.003787 0.000004 0.000004 0.000004 0.000004 0.007629 0.007631 0.003774 0.000004 0.000004 0.000004 0.000004 0.000004 0.003795 0.000004 0.000004 0.003812 0.003844 0.000004 0.003815 0.000004 0.000004 4.204327 0.005000 0.047017
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.088093
(1: 0.000004, 3: 0.000004, 4: 0.003824, 6: 0.000004, (16: 0.000004, 19: 0.015340, (20: 0.003797, 21: 0.003784, 22: 0.000004, (23: 0.000004, 24: 0.000004): 0.003787, 25: 0.000004, 26: 0.000004): 0.003778): 0.019409, (12: 0.007631, 13: 0.003774, 15: 0.000004, 18: 0.000004, 2: 0.000004, 7: 0.000004, 8: 0.000004): 0.007629, (10: 0.000004, 9: 0.000004): 0.003795, ((11: 0.000004, 14: 0.003815, 5: 0.000004): 0.003844, 17: 0.000004): 0.003812);
(C1: 0.000004, C3: 0.000004, C4: 0.003824, C6: 0.000004, (C16: 0.000004, C19: 0.015340, (C20: 0.003797, C21: 0.003784, C22: 0.000004, (C23: 0.000004, C24: 0.000004): 0.003787, C25: 0.000004, C26: 0.000004): 0.003778): 0.019409, (C12: 0.007631, C13: 0.003774, C15: 0.000004, C18: 0.000004, C2: 0.000004, C7: 0.000004, C8: 0.000004): 0.007629, (C10: 0.000004, C9: 0.000004): 0.003795, ((C11: 0.000004, C14: 0.003815, C5: 0.000004): 0.003844, C17: 0.000004): 0.003812);
Detailed output identifying parameters
kappa (ts/tv) = 4.20433
Parameters in M7 (beta):
p = 0.00500 q = 0.04702
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
27..1 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
27..3 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
27..4 0.004 680.7 156.3 0.1000 0.0005 0.0048 0.3 0.7
27..6 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
27..28 0.019 680.7 156.3 0.1000 0.0024 0.0241 1.6 3.8
28..16 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
28..19 0.015 680.7 156.3 0.1000 0.0019 0.0191 1.3 3.0
28..29 0.004 680.7 156.3 0.1000 0.0005 0.0047 0.3 0.7
29..20 0.004 680.7 156.3 0.1000 0.0005 0.0047 0.3 0.7
29..21 0.004 680.7 156.3 0.1000 0.0005 0.0047 0.3 0.7
29..22 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
29..30 0.004 680.7 156.3 0.1000 0.0005 0.0047 0.3 0.7
30..23 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
30..24 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
29..25 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
29..26 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
27..31 0.008 680.7 156.3 0.1000 0.0009 0.0095 0.6 1.5
31..12 0.008 680.7 156.3 0.1000 0.0009 0.0095 0.6 1.5
31..13 0.004 680.7 156.3 0.1000 0.0005 0.0047 0.3 0.7
31..15 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
31..18 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
31..2 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
31..7 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
31..8 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
27..32 0.004 680.7 156.3 0.1000 0.0005 0.0047 0.3 0.7
32..10 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
32..9 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
27..33 0.004 680.7 156.3 0.1000 0.0005 0.0047 0.3 0.7
33..34 0.004 680.7 156.3 0.1000 0.0005 0.0048 0.3 0.7
34..11 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
34..14 0.004 680.7 156.3 0.1000 0.0005 0.0047 0.3 0.7
34..5 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
33..17 0.000 680.7 156.3 0.1000 0.0000 0.0000 0.0 0.0
Time used: 9:46
Model 8: beta&w>1 (11 categories)
TREE # 1: (1, 3, 4, 6, (16, 19, (20, 21, 22, (23, 24), 25, 26)), (12, 13, 15, 18, 2, 7, 8), (10, 9), ((11, 14, 5), 17)); MP score: 23
lnL(ntime: 33 np: 38): -1188.623988 +0.000000
27..1 27..3 27..4 27..6 27..28 28..16 28..19 28..29 29..20 29..21 29..22 29..30 30..23 30..24 29..25 29..26 27..31 31..12 31..13 31..15 31..18 31..2 31..7 31..8 27..32 32..10 32..9 27..33 33..34 34..11 34..14 34..5 33..17
0.000004 0.000004 0.003893 0.000004 0.020124 0.000004 0.015809 0.003848 0.003865 0.003852 0.000004 0.003855 0.000004 0.000004 0.000004 0.000004 0.007713 0.007713 0.003771 0.000004 0.000004 0.000004 0.000004 0.000004 0.003868 0.000004 0.000004 0.003884 0.003952 0.000004 0.003891 0.000004 0.000004 4.606626 0.939710 0.005000 2.040694 2.593912
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 0.090113
(1: 0.000004, 3: 0.000004, 4: 0.003893, 6: 0.000004, (16: 0.000004, 19: 0.015809, (20: 0.003865, 21: 0.003852, 22: 0.000004, (23: 0.000004, 24: 0.000004): 0.003855, 25: 0.000004, 26: 0.000004): 0.003848): 0.020124, (12: 0.007713, 13: 0.003771, 15: 0.000004, 18: 0.000004, 2: 0.000004, 7: 0.000004, 8: 0.000004): 0.007713, (10: 0.000004, 9: 0.000004): 0.003868, ((11: 0.000004, 14: 0.003891, 5: 0.000004): 0.003952, 17: 0.000004): 0.003884);
(C1: 0.000004, C3: 0.000004, C4: 0.003893, C6: 0.000004, (C16: 0.000004, C19: 0.015809, (C20: 0.003865, C21: 0.003852, C22: 0.000004, (C23: 0.000004, C24: 0.000004): 0.003855, C25: 0.000004, C26: 0.000004): 0.003848): 0.020124, (C12: 0.007713, C13: 0.003771, C15: 0.000004, C18: 0.000004, C2: 0.000004, C7: 0.000004, C8: 0.000004): 0.007713, (C10: 0.000004, C9: 0.000004): 0.003868, ((C11: 0.000004, C14: 0.003891, C5: 0.000004): 0.003952, C17: 0.000004): 0.003884);
Detailed output identifying parameters
kappa (ts/tv) = 4.60663
Parameters in M8 (beta&w>1):
p0 = 0.93971 p = 0.00500 q = 2.04069
(p1 = 0.06029) w = 2.59391
MLEs of dN/dS (w) for site classes (K=11)
p: 0.09397 0.09397 0.09397 0.09397 0.09397 0.09397 0.09397 0.09397 0.09397 0.09397 0.06029
w: 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00001 2.59391
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
27..1 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
27..3 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
27..4 0.004 678.9 158.1 0.1564 0.0006 0.0041 0.4 0.6
27..6 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
27..28 0.020 678.9 158.1 0.1564 0.0033 0.0212 2.3 3.4
28..16 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
28..19 0.016 678.9 158.1 0.1564 0.0026 0.0167 1.8 2.6
28..29 0.004 678.9 158.1 0.1564 0.0006 0.0041 0.4 0.6
29..20 0.004 678.9 158.1 0.1564 0.0006 0.0041 0.4 0.6
29..21 0.004 678.9 158.1 0.1564 0.0006 0.0041 0.4 0.6
29..22 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
29..30 0.004 678.9 158.1 0.1564 0.0006 0.0041 0.4 0.6
30..23 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
30..24 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
29..25 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
29..26 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
27..31 0.008 678.9 158.1 0.1564 0.0013 0.0081 0.9 1.3
31..12 0.008 678.9 158.1 0.1564 0.0013 0.0081 0.9 1.3
31..13 0.004 678.9 158.1 0.1564 0.0006 0.0040 0.4 0.6
31..15 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
31..18 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
31..2 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
31..7 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
31..8 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
27..32 0.004 678.9 158.1 0.1564 0.0006 0.0041 0.4 0.6
32..10 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
32..9 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
27..33 0.004 678.9 158.1 0.1564 0.0006 0.0041 0.4 0.6
33..34 0.004 678.9 158.1 0.1564 0.0007 0.0042 0.4 0.7
34..11 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
34..14 0.004 678.9 158.1 0.1564 0.0006 0.0041 0.4 0.6
34..5 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
33..17 0.000 678.9 158.1 0.1564 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
16 V 1.000** 2.594
52 V 1.000** 2.594
113 V 1.000** 2.594
182 V 1.000** 2.594
183 I 1.000** 2.594
191 S 1.000** 2.594
278 V 1.000** 2.594
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
113 V 0.511 1.951 +- 2.103
182 V 0.862 3.007 +- 1.972
183 I 0.828 2.902 +- 1.984
278 V 0.546 2.092 +- 2.155
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.985
p : 0.921 0.072 0.006 0.001 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.001 0.011 0.036 0.069 0.105 0.141 0.177 0.213 0.248
ws: 0.288 0.267 0.184 0.111 0.064 0.037 0.022 0.013 0.008 0.005
Time used: 15:02
Model 1: NearlyNeutral -1189.294580 Model 2: PositiveSelection -1188.623994 Model 7: beta -1189.361587 Model 8: beta&w>1 -1188.623988 Model 2 vs 1 1.341172 Model 8 vs 7 1.475198
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
