--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -2201.07 -2234.00
2 -2203.37 -2240.33
--------------------------------------
TOTAL -2201.67 -2239.64
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.722374 0.006013 0.581276 0.885971 0.717310 965.49 975.01 1.000
r(A<->C){all} 0.083517 0.000644 0.037871 0.133808 0.081824 739.88 797.00 1.000
r(A<->G){all} 0.179708 0.001030 0.121399 0.246706 0.177974 780.22 831.89 1.000
r(A<->T){all} 0.153406 0.000760 0.101639 0.211179 0.151782 563.45 756.63 1.000
r(C<->G){all} 0.029484 0.000266 0.000611 0.058661 0.027708 494.16 538.84 1.000
r(C<->T){all} 0.470278 0.001841 0.387270 0.555125 0.470413 486.81 619.75 1.001
r(G<->T){all} 0.083606 0.000422 0.047249 0.126850 0.082255 912.00 920.84 1.000
pi(A){all} 0.262169 0.000233 0.231899 0.292024 0.262150 834.66 1040.46 1.000
pi(C){all} 0.203610 0.000186 0.177673 0.229175 0.203384 911.73 1009.33 1.000
pi(G){all} 0.218775 0.000222 0.191313 0.248524 0.218365 946.58 972.31 1.000
pi(T){all} 0.315445 0.000256 0.284858 0.345653 0.315528 1008.10 1060.01 1.000
alpha{1,2} 0.169066 0.003277 0.054137 0.292813 0.166508 605.12 613.20 1.000
alpha{3} 2.309145 1.437202 0.607576 4.674229 2.044494 708.59 905.62 1.000
pinvar{all} 0.256067 0.010549 0.034623 0.424268 0.266987 480.35 575.74 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -2082.031067
Model 2: PositiveSelection -2082.031067
Model 7: beta -2079.659619
Model 8: beta&w>1 -2079.629114
Model 2 vs 1 0
Model 8 vs 7 .061010
-- Starting log on Fri Nov 04 00:59:45 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.11 sec, SCORE=1000, Nseq=44, Len=234
C1 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C2 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C3 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C4 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C5 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C6 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C7 --------MTDANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C8 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C9 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C10 MGDKGVLYNNNASCN-DNIVTHLKNWNFGWNVILTIFILILQFGHYKYSR
C11 --------MSNNSIPQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C12 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C13 -------MGDNDTCN-DTIVTHLKNWNFGWNVILTIFILILQFGHYKYSR
C14 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C15 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C16 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C17 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C18 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C19 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C20 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C21 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C22 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C23 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C24 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C25 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C26 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C27 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C28 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C29 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C30 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C31 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C32 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C33 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C34 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C35 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C36 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C37 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C38 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C39 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C40 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C41 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C42 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C43 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C44 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
: . :*********.**:******:***********
C1 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C2 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFFMAVSTLVMW
C3 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C4 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C5 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVIW
C6 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C7 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C8 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C9 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVALSLFMAVSTLIMW
C10 IFYGIKMLVLWLLWPLVLALSIFDTYANWNENWAFVALSLFMAIATLIMW
C11 VFYGLKMLVLWLLWPLVLALSIFDTWANWGTNWAFVAFSLFMAVSTLIMW
C12 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C13 IFYGVKMLVLWLLWPLVLALSIFDTYANWNENWAFVALSLFMAIATFVMW
C14 IFYGLKMLILWLLWPLVLALSIFDSWANWGSNWAFVAFSLFMAVSTLIMW
C15 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C16 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C17 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C18 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C19 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C20 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C21 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C22 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C23 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C24 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C25 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C26 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C27 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C28 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C29 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C30 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C31 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C32 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C33 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C34 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C35 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C36 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C37 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C38 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C39 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C40 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C41 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C42 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C43 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C44 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
:***:***:***************::***. ******:*::**::*:::*
C1 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C2 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C3 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C4 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C5 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C6 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C7 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C8 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C9 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C10 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPTLQAPTGITV
C11 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPTQQAPTGITV
C12 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C13 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPTQQAPTGITV
C14 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C15 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C16 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C17 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C18 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C19 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C20 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C21 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C22 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C23 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C24 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C25 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C26 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C27 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C28 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C29 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C30 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C31 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C32 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C33 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C34 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C35 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C36 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C37 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C38 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C39 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C40 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C41 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C42 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C43 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C44 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
****.*********************************** ********
C1 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C2 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C3 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C4 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C5 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C6 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C7 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSRNS
C8 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C9 TLLSGVLYVDGHRLASGVQVQNLPEYMTVAVPSTTIIYSRVGRSVNSRNS
C10 TLLSGVLYVDGHRIASGIQVHNLPEYMSVAVPSTTIIYSRVGRSVNSRNN
C11 TLLSGVLYVDGHRLASGIQVHNLPEYMSVAVPSTTIIYSRVGRSVNSRNS
C12 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C13 TLLSGVLYVDGHRIASGIQVHNLPEYMSVAVPSTTIIYSRVGRSVNSRNN
C14 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSRNS
C15 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C16 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C17 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C18 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C19 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C20 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSRNS
C21 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C22 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C23 TLLSGVLYVDGHRLASGVQVHNLPEYMAVAVPSTTIIYSRVGRSVNSQNS
C24 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C25 TLLSGVLYVDGHRLASGVQVHNLPEYMAVAVPSTTIIYSRVGRSVNSQNS
C26 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C27 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C28 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C29 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C30 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C31 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C32 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C33 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C34 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C35 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C36 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C37 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C38 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C39 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C40 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C41 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C42 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C43 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C44 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
*************:***:**:****:*:*******************:*.
C1 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C2 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C3 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C4 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C5 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C6 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C7 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C8 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C9 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C10 TGWMFYVRVKHGDFSAVSSPQSNMTENERLLHLV
C11 TGWVFYVRVKHGDFSAVSSPTSNMSENERLLHLI
C12 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C13 TGWMFYVRVKHGDFSAVSSPQSNMTENERLLHLV
C14 TGWVFYVRVKHGDFSAVSSPQSNMSENERLLHLI
C15 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C16 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C17 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C18 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C19 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C20 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C21 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C22 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C23 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C24 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C25 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C26 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C27 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C28 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C29 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C30 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C31 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C32 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C33 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C34 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C35 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C36 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C37 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C38 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C39 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C40 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C41 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C42 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C43 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C44 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
***:**************** ***:*******:.
-- Starting log on Fri Nov 04 01:00:16 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.45 sec, SCORE=995, Nseq=44, Len=234
C1 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C2 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C3 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C4 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C5 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C6 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C7 --------MTDANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C8 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C9 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C10 MGDKGVLYNNNASCN-DNIVTHLKNWNFGWNVILTIFILILQFGHYKYSR
C11 --------MSNNSIPQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C12 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C13 -------MGDNDTCN-DTIVTHLKNWNFGWNVILTIFILILQFGHYKYSR
C14 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C15 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C16 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C17 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C18 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C19 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C20 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C21 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C22 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C23 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C24 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C25 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C26 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C27 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C28 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C29 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C30 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C31 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C32 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C33 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C34 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C35 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C36 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C37 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C38 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C39 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C40 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C41 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C42 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C43 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C44 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
: . :*********.**:******:***********
C1 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C2 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFFMAVSTLVMW
C3 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C4 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C5 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVIW
C6 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C7 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C8 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C9 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVALSLFMAVSTLIMW
C10 IFYGIKMLVLWLLWPLVLALSIFDTYANWNENWAFVALSLFMAIATLIMW
C11 VFYGLKMLVLWLLWPLVLALSIFDTWANWGTNWAFVAFSLFMAVSTLIMW
C12 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C13 IFYGVKMLVLWLLWPLVLALSIFDTYANWNENWAFVALSLFMAIATFVMW
C14 IFYGLKMLILWLLWPLVLALSIFDSWANWGSNWAFVAFSLFMAVSTLIMW
C15 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C16 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C17 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C18 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C19 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C20 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C21 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C22 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C23 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C24 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C25 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C26 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C27 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C28 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C29 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C30 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C31 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C32 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C33 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C34 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C35 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C36 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C37 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C38 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C39 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C40 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C41 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C42 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C43 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C44 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
:***:***:***************::***. ******:*::**::*:::*
C1 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C2 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C3 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C4 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C5 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C6 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C7 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C8 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C9 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C10 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPTLQAPTGITV
C11 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPTQQAPTGITV
C12 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C13 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPTQQAPTGITV
C14 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C15 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C16 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C17 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C18 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C19 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C20 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C21 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C22 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C23 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C24 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C25 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C26 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C27 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C28 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C29 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C30 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C31 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C32 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C33 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C34 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C35 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C36 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C37 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C38 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C39 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C40 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C41 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C42 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C43 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C44 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
****.*********************************** ********
C1 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C2 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C3 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C4 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C5 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C6 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C7 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSRNS
C8 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C9 TLLSGVLYVDGHRLASGVQVQNLPEYMTVAVPSTTIIYSRVGRSVNSRNS
C10 TLLSGVLYVDGHRIASGIQVHNLPEYMSVAVPSTTIIYSRVGRSVNSRNN
C11 TLLSGVLYVDGHRLASGIQVHNLPEYMSVAVPSTTIIYSRVGRSVNSRNS
C12 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C13 TLLSGVLYVDGHRIASGIQVHNLPEYMSVAVPSTTIIYSRVGRSVNSRNN
C14 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSRNS
C15 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C16 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C17 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C18 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C19 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C20 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSRNS
C21 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C22 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C23 TLLSGVLYVDGHRLASGVQVHNLPEYMAVAVPSTTIIYSRVGRSVNSQNS
C24 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C25 TLLSGVLYVDGHRLASGVQVHNLPEYMAVAVPSTTIIYSRVGRSVNSQNS
C26 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C27 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C28 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C29 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C30 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C31 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C32 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C33 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C34 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C35 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C36 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C37 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C38 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C39 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C40 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C41 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C42 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C43 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C44 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
*************:***:**:****:*:*******************:*.
C1 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C2 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C3 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C4 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C5 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C6 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C7 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C8 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C9 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C10 TGWMFYVRVKHGDFSAVSSPQSNMTENERLLHLV
C11 TGWVFYVRVKHGDFSAVSSPTSNMSENERLLHLI
C12 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C13 TGWMFYVRVKHGDFSAVSSPQSNMTENERLLHLV
C14 TGWVFYVRVKHGDFSAVSSPQSNMSENERLLHLI
C15 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C16 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C17 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C18 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C19 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C20 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C21 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C22 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C23 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C24 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C25 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C26 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C27 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C28 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C29 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C30 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C31 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C32 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C33 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C34 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C35 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C36 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C37 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C38 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C39 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C40 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C41 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C42 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C43 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C44 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
***:**************** ***:*******:.
-- Starting log on Fri Nov 04 01:38:50 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E.result/gapped_alignment/codeml,229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 30 taxa and 702 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C10
Taxon 2 -> C11
Taxon 3 -> C12
Taxon 4 -> C14
Taxon 5 -> C15
Taxon 6 -> C16
Taxon 7 -> C18
Taxon 8 -> C19
Taxon 9 -> C2
Taxon 10 -> C20
Taxon 11 -> C21
Taxon 12 -> C22
Taxon 13 -> C23
Taxon 14 -> C24
Taxon 15 -> C25
Taxon 16 -> C29
Taxon 17 -> C31
Taxon 18 -> C32
Taxon 19 -> C33
Taxon 20 -> C35
Taxon 21 -> C38
Taxon 22 -> C39
Taxon 23 -> C4
Taxon 24 -> C40
Taxon 25 -> C41
Taxon 26 -> C43
Taxon 27 -> C44
Taxon 28 -> C6
Taxon 29 -> C8
Taxon 30 -> C9
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1667525932
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 538756955
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 6716124624
Seed = 1341040686
Swapseed = 1667525932
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 44 unique site patterns
Division 2 has 18 unique site patterns
Division 3 has 91 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -5455.768235 -- 82.122948
Chain 2 -- -4804.562520 -- 82.122948
Chain 3 -- -5542.835731 -- 82.122948
Chain 4 -- -5031.772771 -- 82.122948
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -5222.763903 -- 82.122948
Chain 2 -- -4758.034579 -- 82.122948
Chain 3 -- -5581.643552 -- 82.122948
Chain 4 -- -5638.175198 -- 82.122948
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-5455.768] (-4804.563) (-5542.836) (-5031.773) * [-5222.764] (-4758.035) (-5581.644) (-5638.175)
1000 -- (-2525.759) [-2438.529] (-2605.767) (-2576.429) * (-2456.726) (-2522.385) [-2403.174] (-2495.852) -- 0:16:39
2000 -- (-2337.006) (-2314.080) (-2360.405) [-2302.270] * (-2288.094) (-2306.126) (-2254.790) [-2253.868] -- 0:16:38
3000 -- (-2256.040) (-2248.007) (-2249.569) [-2236.878] * (-2264.517) (-2264.579) (-2244.671) [-2241.140] -- 0:16:37
4000 -- [-2220.075] (-2266.152) (-2224.020) (-2231.349) * (-2256.343) (-2232.541) (-2242.671) [-2224.891] -- 0:16:36
5000 -- (-2217.474) (-2246.868) [-2222.667] (-2248.664) * (-2236.701) (-2245.061) (-2255.937) [-2225.421] -- 0:16:35
Average standard deviation of split frequencies: 0.089921
6000 -- (-2230.486) [-2230.275] (-2223.836) (-2246.842) * (-2246.564) (-2234.851) (-2230.026) [-2227.793] -- 0:16:34
7000 -- [-2224.760] (-2229.609) (-2239.028) (-2237.392) * (-2223.000) (-2249.429) [-2214.813] (-2228.546) -- 0:16:33
8000 -- (-2236.921) (-2246.267) (-2228.416) [-2228.788] * (-2223.791) (-2232.104) [-2224.365] (-2221.084) -- 0:16:32
9000 -- (-2228.774) (-2237.632) (-2238.968) [-2215.319] * (-2233.784) (-2236.864) [-2223.768] (-2224.388) -- 0:16:31
10000 -- (-2234.369) (-2241.550) (-2233.990) [-2219.301] * (-2228.533) (-2219.345) (-2220.263) [-2216.732] -- 0:16:30
Average standard deviation of split frequencies: 0.080396
11000 -- (-2244.999) (-2228.829) (-2236.131) [-2215.270] * [-2219.173] (-2229.648) (-2227.319) (-2228.413) -- 0:16:29
12000 -- (-2242.160) [-2217.909] (-2245.553) (-2222.305) * (-2212.922) (-2226.052) (-2239.115) [-2212.837] -- 0:16:28
13000 -- (-2231.306) [-2219.453] (-2220.484) (-2227.823) * [-2224.786] (-2250.752) (-2224.414) (-2209.859) -- 0:16:27
14000 -- (-2227.988) (-2242.300) (-2237.799) [-2211.944] * [-2228.437] (-2241.171) (-2215.384) (-2227.522) -- 0:16:26
15000 -- (-2229.018) (-2246.151) (-2207.605) [-2221.889] * (-2239.541) (-2241.823) (-2212.541) [-2221.204] -- 0:16:25
Average standard deviation of split frequencies: 0.078823
16000 -- (-2251.825) [-2223.259] (-2236.977) (-2245.075) * (-2234.472) (-2244.684) [-2221.306] (-2225.132) -- 0:16:24
17000 -- (-2215.595) (-2237.577) (-2231.873) [-2215.249] * [-2231.439] (-2230.650) (-2217.757) (-2227.764) -- 0:16:23
18000 -- (-2242.113) (-2226.983) (-2233.521) [-2202.648] * (-2242.582) (-2240.640) [-2215.461] (-2238.085) -- 0:16:22
19000 -- (-2223.933) (-2216.024) [-2229.071] (-2213.131) * (-2219.430) (-2231.851) [-2227.122] (-2222.596) -- 0:16:21
20000 -- (-2213.977) [-2212.946] (-2231.526) (-2219.058) * (-2239.123) (-2232.104) (-2227.204) [-2217.497] -- 0:16:20
Average standard deviation of split frequencies: 0.067452
21000 -- (-2223.311) (-2228.287) [-2222.820] (-2207.712) * (-2240.085) (-2212.522) [-2223.336] (-2219.557) -- 0:16:19
22000 -- (-2213.980) [-2214.216] (-2210.194) (-2240.075) * (-2217.822) [-2217.899] (-2220.695) (-2227.861) -- 0:16:18
23000 -- (-2221.399) (-2225.467) [-2202.076] (-2229.896) * (-2216.604) [-2219.596] (-2224.433) (-2234.669) -- 0:16:17
24000 -- (-2219.671) (-2224.878) (-2239.933) [-2212.360] * [-2219.739] (-2238.883) (-2238.840) (-2219.059) -- 0:15:35
25000 -- (-2217.790) [-2211.605] (-2226.794) (-2207.327) * (-2224.204) (-2243.780) [-2208.840] (-2210.771) -- 0:15:36
Average standard deviation of split frequencies: 0.047403
26000 -- (-2224.227) (-2218.905) (-2242.363) [-2214.575] * (-2226.889) (-2253.942) (-2218.148) [-2213.573] -- 0:15:36
27000 -- (-2224.873) (-2215.211) (-2232.494) [-2225.501] * [-2221.896] (-2235.090) (-2215.334) (-2214.194) -- 0:15:36
28000 -- (-2235.283) (-2228.173) (-2228.328) [-2205.735] * (-2221.224) [-2210.699] (-2212.259) (-2237.692) -- 0:15:37
29000 -- (-2230.323) (-2235.172) (-2224.302) [-2226.705] * (-2234.938) (-2224.518) [-2209.375] (-2224.742) -- 0:15:37
30000 -- (-2226.356) (-2246.482) (-2219.661) [-2216.890] * (-2240.420) [-2214.998] (-2239.587) (-2220.928) -- 0:15:37
Average standard deviation of split frequencies: 0.044817
31000 -- [-2223.883] (-2225.190) (-2208.128) (-2231.120) * (-2235.589) [-2223.423] (-2221.120) (-2242.716) -- 0:15:37
32000 -- (-2231.836) (-2227.202) [-2224.115] (-2222.685) * (-2218.149) (-2240.090) (-2217.419) [-2230.359] -- 0:15:37
33000 -- (-2213.291) (-2219.731) (-2225.435) [-2208.448] * [-2201.758] (-2237.143) (-2225.633) (-2232.324) -- 0:15:37
34000 -- [-2215.793] (-2221.455) (-2232.682) (-2229.494) * [-2210.624] (-2225.593) (-2245.368) (-2230.413) -- 0:15:37
35000 -- (-2202.320) (-2252.247) [-2215.990] (-2226.421) * (-2234.595) [-2219.172] (-2235.825) (-2210.288) -- 0:15:37
Average standard deviation of split frequencies: 0.043450
36000 -- [-2227.215] (-2222.003) (-2229.030) (-2222.866) * (-2229.312) (-2223.937) (-2226.798) [-2220.183] -- 0:15:37
37000 -- (-2246.751) (-2215.282) (-2243.488) [-2216.834] * (-2225.763) (-2239.772) [-2213.384] (-2231.283) -- 0:15:36
38000 -- [-2211.090] (-2209.304) (-2225.930) (-2227.364) * (-2229.287) (-2233.595) [-2212.291] (-2238.136) -- 0:15:36
39000 -- (-2235.160) [-2206.331] (-2239.793) (-2234.523) * [-2207.717] (-2225.915) (-2218.036) (-2232.218) -- 0:15:36
40000 -- (-2227.922) [-2218.698] (-2222.049) (-2251.419) * (-2225.293) (-2227.007) [-2222.339] (-2230.498) -- 0:15:36
Average standard deviation of split frequencies: 0.040670
41000 -- (-2218.573) (-2230.294) (-2230.512) [-2214.057] * (-2238.112) (-2206.639) [-2215.549] (-2232.754) -- 0:15:35
42000 -- (-2219.337) [-2216.884] (-2228.808) (-2230.539) * [-2209.312] (-2204.460) (-2229.827) (-2230.209) -- 0:15:35
43000 -- (-2241.530) [-2207.780] (-2219.494) (-2211.498) * (-2235.313) (-2217.794) [-2214.218] (-2227.365) -- 0:15:34
44000 -- (-2246.330) [-2219.960] (-2220.850) (-2228.367) * (-2229.162) [-2221.291] (-2226.138) (-2219.991) -- 0:15:34
45000 -- (-2242.462) [-2223.298] (-2229.268) (-2211.709) * (-2240.827) [-2216.736] (-2210.242) (-2216.843) -- 0:15:33
Average standard deviation of split frequencies: 0.033130
46000 -- (-2215.753) (-2223.442) (-2250.965) [-2202.562] * (-2231.887) (-2217.353) (-2215.569) [-2221.270] -- 0:15:33
47000 -- (-2234.630) (-2230.004) [-2217.101] (-2226.603) * [-2217.617] (-2220.068) (-2226.494) (-2217.617) -- 0:15:32
48000 -- (-2222.228) (-2225.450) (-2210.582) [-2218.779] * (-2233.046) [-2216.586] (-2236.879) (-2214.893) -- 0:15:32
49000 -- (-2211.824) (-2246.958) [-2228.342] (-2215.880) * (-2225.861) [-2210.683] (-2223.754) (-2216.902) -- 0:15:31
50000 -- (-2227.038) (-2228.183) (-2237.519) [-2206.933] * (-2211.633) [-2224.840] (-2226.401) (-2248.768) -- 0:15:31
Average standard deviation of split frequencies: 0.034115
51000 -- (-2236.804) (-2224.909) (-2230.358) [-2213.734] * [-2221.572] (-2230.339) (-2214.253) (-2223.957) -- 0:15:30
52000 -- (-2226.857) (-2218.580) [-2203.108] (-2207.259) * (-2229.979) (-2232.598) (-2218.964) [-2210.055] -- 0:15:29
53000 -- [-2232.510] (-2223.096) (-2230.535) (-2234.694) * (-2225.063) (-2234.920) [-2213.341] (-2221.671) -- 0:15:29
54000 -- [-2231.045] (-2225.368) (-2226.437) (-2235.625) * (-2231.137) (-2226.666) (-2216.019) [-2215.852] -- 0:15:28
55000 -- (-2236.056) (-2205.759) [-2206.618] (-2219.064) * (-2235.624) (-2233.682) (-2222.499) [-2206.725] -- 0:15:27
Average standard deviation of split frequencies: 0.035431
56000 -- [-2215.254] (-2219.620) (-2220.252) (-2223.424) * (-2215.815) (-2231.757) [-2208.835] (-2219.334) -- 0:15:27
57000 -- [-2231.331] (-2236.160) (-2209.467) (-2238.791) * (-2229.797) [-2212.827] (-2223.638) (-2223.004) -- 0:15:26
58000 -- (-2229.902) (-2220.977) [-2204.360] (-2239.085) * (-2220.466) [-2209.860] (-2208.432) (-2222.363) -- 0:15:09
59000 -- (-2219.934) (-2238.357) [-2211.731] (-2223.167) * (-2220.239) (-2224.812) [-2213.138] (-2221.183) -- 0:15:09
60000 -- (-2225.634) (-2226.344) (-2212.488) [-2204.690] * (-2257.094) [-2232.474] (-2227.863) (-2234.700) -- 0:15:08
Average standard deviation of split frequencies: 0.033753
61000 -- (-2234.049) (-2226.217) [-2215.528] (-2216.418) * (-2231.460) (-2248.261) [-2213.548] (-2216.192) -- 0:15:08
62000 -- (-2231.326) [-2219.357] (-2223.180) (-2220.500) * (-2229.854) (-2225.843) [-2214.021] (-2221.801) -- 0:15:07
63000 -- [-2218.864] (-2212.736) (-2231.970) (-2230.322) * (-2230.266) [-2213.663] (-2210.949) (-2225.820) -- 0:15:07
64000 -- (-2228.497) [-2202.996] (-2239.887) (-2238.029) * (-2234.735) (-2225.252) [-2205.729] (-2235.862) -- 0:15:06
65000 -- [-2210.055] (-2220.462) (-2210.270) (-2246.698) * (-2235.822) (-2222.213) (-2209.970) [-2212.616] -- 0:15:06
Average standard deviation of split frequencies: 0.028984
66000 -- (-2235.846) [-2206.523] (-2211.116) (-2224.069) * (-2233.922) (-2219.343) (-2216.185) [-2228.119] -- 0:15:05
67000 -- (-2234.358) (-2208.725) [-2210.737] (-2217.794) * (-2235.075) (-2217.041) [-2215.848] (-2225.087) -- 0:15:05
68000 -- (-2221.933) (-2215.442) (-2219.673) [-2206.257] * (-2242.491) [-2203.062] (-2239.751) (-2230.573) -- 0:15:04
69000 -- [-2227.063] (-2234.709) (-2225.875) (-2241.583) * (-2233.730) (-2219.044) [-2211.527] (-2225.848) -- 0:15:04
70000 -- [-2226.105] (-2228.190) (-2226.526) (-2217.423) * (-2219.823) (-2216.148) [-2210.259] (-2241.362) -- 0:15:03
Average standard deviation of split frequencies: 0.029454
71000 -- (-2235.369) (-2212.200) (-2234.513) [-2215.485] * (-2236.771) [-2224.770] (-2227.941) (-2231.270) -- 0:15:02
72000 -- (-2236.394) [-2213.862] (-2230.740) (-2240.810) * [-2212.013] (-2225.224) (-2223.940) (-2248.548) -- 0:15:02
73000 -- (-2241.740) [-2212.396] (-2230.754) (-2232.031) * [-2222.043] (-2216.705) (-2233.437) (-2235.549) -- 0:15:01
74000 -- (-2236.013) (-2223.009) (-2239.938) [-2202.336] * (-2232.483) [-2216.723] (-2236.243) (-2227.250) -- 0:15:00
75000 -- (-2222.559) [-2203.650] (-2222.249) (-2230.894) * (-2229.490) (-2218.195) [-2204.913] (-2228.488) -- 0:15:00
Average standard deviation of split frequencies: 0.029793
76000 -- (-2217.050) (-2215.891) [-2202.061] (-2237.868) * (-2225.188) (-2218.301) [-2211.759] (-2228.516) -- 0:14:59
77000 -- (-2236.520) (-2222.475) [-2214.644] (-2235.273) * (-2217.243) (-2222.796) [-2225.618] (-2221.229) -- 0:14:59
78000 -- (-2224.086) (-2219.499) [-2228.144] (-2230.750) * (-2223.220) (-2212.996) [-2224.648] (-2225.226) -- 0:14:58
79000 -- (-2229.782) [-2215.061] (-2227.099) (-2220.394) * (-2232.049) (-2228.306) (-2228.635) [-2221.878] -- 0:14:57
80000 -- (-2232.159) (-2228.238) [-2209.630] (-2228.601) * (-2232.363) [-2215.060] (-2231.748) (-2240.049) -- 0:14:57
Average standard deviation of split frequencies: 0.028182
81000 -- (-2224.193) (-2219.964) [-2226.782] (-2215.984) * (-2234.731) [-2212.813] (-2212.980) (-2245.860) -- 0:14:44
82000 -- (-2219.459) (-2223.204) [-2220.514] (-2238.940) * (-2219.765) [-2216.697] (-2237.878) (-2245.119) -- 0:14:44
83000 -- (-2232.694) (-2226.627) (-2222.335) [-2232.403] * (-2222.889) (-2218.767) (-2226.595) [-2227.069] -- 0:14:43
84000 -- (-2238.539) [-2214.093] (-2208.342) (-2229.355) * [-2209.680] (-2221.743) (-2234.217) (-2220.439) -- 0:14:43
85000 -- (-2220.077) [-2231.587] (-2223.009) (-2237.410) * (-2211.746) (-2221.675) (-2223.250) [-2213.243] -- 0:14:42
Average standard deviation of split frequencies: 0.027158
86000 -- (-2225.688) (-2238.873) (-2219.494) [-2218.868] * (-2205.000) (-2217.214) (-2225.501) [-2210.512] -- 0:14:42
87000 -- (-2237.788) (-2230.471) (-2226.658) [-2216.625] * (-2219.162) (-2208.649) (-2243.069) [-2217.157] -- 0:14:41
88000 -- [-2211.574] (-2235.164) (-2233.451) (-2229.507) * (-2233.349) (-2234.247) [-2227.822] (-2233.737) -- 0:14:40
89000 -- [-2216.673] (-2224.870) (-2219.351) (-2227.382) * [-2226.019] (-2239.954) (-2220.873) (-2227.223) -- 0:14:40
90000 -- (-2224.765) (-2218.016) (-2220.724) [-2218.663] * (-2231.008) (-2225.617) (-2227.334) [-2225.304] -- 0:14:39
Average standard deviation of split frequencies: 0.025242
91000 -- (-2216.580) (-2223.786) [-2201.460] (-2218.566) * (-2215.304) (-2232.293) (-2230.890) [-2231.530] -- 0:14:39
92000 -- (-2209.252) (-2227.050) [-2229.806] (-2229.200) * (-2218.158) (-2218.091) (-2234.821) [-2219.741] -- 0:14:38
93000 -- (-2237.782) [-2210.989] (-2220.672) (-2223.083) * (-2221.590) (-2233.098) (-2238.056) [-2221.339] -- 0:14:37
94000 -- (-2244.468) (-2222.692) (-2229.781) [-2211.183] * (-2222.857) (-2226.271) (-2246.056) [-2209.503] -- 0:14:37
95000 -- (-2217.804) (-2232.291) [-2207.896] (-2234.778) * (-2235.868) [-2222.961] (-2236.767) (-2218.033) -- 0:14:36
Average standard deviation of split frequencies: 0.023957
96000 -- [-2205.149] (-2235.106) (-2226.425) (-2227.232) * (-2234.008) [-2217.795] (-2241.879) (-2219.503) -- 0:14:35
97000 -- [-2217.712] (-2233.178) (-2224.276) (-2228.129) * (-2222.361) [-2217.009] (-2223.197) (-2222.226) -- 0:14:35
98000 -- [-2233.828] (-2221.455) (-2221.850) (-2218.744) * (-2223.232) [-2217.312] (-2226.661) (-2231.902) -- 0:14:34
99000 -- (-2229.437) (-2204.994) (-2216.942) [-2219.061] * [-2216.743] (-2241.530) (-2222.852) (-2243.015) -- 0:14:33
100000 -- (-2227.053) (-2216.490) (-2241.305) [-2222.611] * (-2226.375) (-2222.107) [-2214.120] (-2236.398) -- 0:14:33
Average standard deviation of split frequencies: 0.024083
101000 -- (-2218.141) [-2212.959] (-2242.691) (-2235.102) * (-2236.926) (-2235.440) [-2215.138] (-2237.644) -- 0:14:32
102000 -- (-2214.601) [-2221.295] (-2247.269) (-2228.762) * (-2229.929) (-2222.564) (-2223.783) [-2215.217] -- 0:14:31
103000 -- (-2232.099) [-2200.817] (-2228.917) (-2251.329) * (-2229.100) (-2227.493) (-2226.823) [-2210.039] -- 0:14:30
104000 -- (-2226.893) [-2211.173] (-2223.466) (-2242.899) * (-2230.067) (-2235.024) (-2212.982) [-2223.556] -- 0:14:30
105000 -- [-2212.951] (-2215.975) (-2240.406) (-2226.719) * (-2216.173) (-2228.053) [-2212.961] (-2222.498) -- 0:14:29
Average standard deviation of split frequencies: 0.022920
106000 -- (-2209.914) [-2217.878] (-2222.941) (-2230.796) * (-2214.769) [-2211.412] (-2222.836) (-2237.102) -- 0:14:28
107000 -- [-2202.149] (-2220.468) (-2233.459) (-2228.807) * (-2232.946) [-2213.295] (-2231.223) (-2227.658) -- 0:14:27
108000 -- [-2200.036] (-2217.783) (-2226.805) (-2233.938) * (-2221.364) [-2212.884] (-2219.207) (-2220.054) -- 0:14:27
109000 -- (-2225.099) (-2225.566) (-2235.380) [-2217.959] * (-2245.123) [-2210.235] (-2242.141) (-2230.664) -- 0:14:18
110000 -- (-2225.068) (-2220.277) (-2255.410) [-2211.724] * (-2235.074) (-2228.672) (-2231.869) [-2211.630] -- 0:14:17
Average standard deviation of split frequencies: 0.020985
111000 -- (-2221.118) [-2214.930] (-2256.526) (-2245.737) * (-2224.810) (-2233.304) [-2221.927] (-2243.784) -- 0:14:16
112000 -- (-2237.762) (-2204.894) (-2238.273) [-2218.817] * [-2222.295] (-2229.321) (-2241.896) (-2236.587) -- 0:14:16
113000 -- (-2217.385) [-2222.203] (-2226.431) (-2219.437) * (-2216.825) (-2227.332) (-2226.018) [-2230.041] -- 0:14:15
114000 -- [-2211.450] (-2219.225) (-2216.943) (-2220.711) * (-2221.152) (-2211.790) [-2219.069] (-2224.616) -- 0:14:14
115000 -- (-2226.647) (-2229.255) [-2218.496] (-2229.313) * [-2204.931] (-2220.755) (-2229.029) (-2235.835) -- 0:14:14
Average standard deviation of split frequencies: 0.021018
116000 -- (-2223.713) (-2232.164) (-2217.936) [-2222.994] * (-2219.317) (-2234.047) [-2209.975] (-2226.795) -- 0:14:13
117000 -- (-2224.118) (-2235.911) [-2208.210] (-2223.346) * (-2230.093) (-2225.174) [-2215.218] (-2232.712) -- 0:14:12
118000 -- (-2226.353) (-2258.510) [-2218.618] (-2218.477) * (-2220.152) (-2230.735) [-2219.262] (-2236.363) -- 0:14:12
119000 -- (-2232.635) (-2248.867) [-2218.049] (-2210.876) * [-2215.936] (-2220.513) (-2211.457) (-2251.561) -- 0:14:11
120000 -- (-2233.953) (-2240.601) [-2219.898] (-2224.120) * (-2238.457) [-2224.087] (-2217.172) (-2239.508) -- 0:14:10
Average standard deviation of split frequencies: 0.021243
121000 -- (-2227.799) (-2238.615) (-2236.798) [-2213.321] * (-2224.095) (-2228.151) (-2223.514) [-2216.977] -- 0:14:09
122000 -- (-2231.343) [-2223.161] (-2233.165) (-2217.959) * (-2241.339) [-2218.843] (-2221.808) (-2220.024) -- 0:14:09
123000 -- (-2227.356) [-2218.472] (-2221.768) (-2209.610) * (-2232.022) [-2216.816] (-2227.212) (-2221.122) -- 0:14:08
124000 -- [-2212.953] (-2234.831) (-2217.036) (-2213.195) * (-2220.940) (-2223.760) [-2222.994] (-2226.624) -- 0:14:07
125000 -- (-2210.991) [-2213.464] (-2229.999) (-2225.817) * (-2236.310) (-2217.146) [-2216.061] (-2219.061) -- 0:14:07
Average standard deviation of split frequencies: 0.019973
126000 -- [-2210.740] (-2235.355) (-2221.919) (-2223.114) * (-2239.529) (-2210.374) [-2212.052] (-2215.157) -- 0:14:06
127000 -- (-2229.970) (-2239.123) [-2212.954] (-2214.790) * (-2229.308) [-2216.709] (-2214.342) (-2227.883) -- 0:14:05
128000 -- [-2206.891] (-2241.165) (-2214.922) (-2236.012) * (-2216.083) (-2222.125) (-2210.651) [-2218.760] -- 0:14:04
129000 -- [-2218.802] (-2219.751) (-2219.131) (-2224.687) * (-2221.665) (-2245.517) [-2217.957] (-2223.435) -- 0:14:03
130000 -- [-2226.362] (-2232.975) (-2233.543) (-2225.193) * (-2219.527) (-2232.218) [-2224.657] (-2244.920) -- 0:14:03
Average standard deviation of split frequencies: 0.020100
131000 -- (-2232.203) (-2219.506) [-2210.292] (-2222.968) * (-2229.339) [-2225.071] (-2223.623) (-2235.704) -- 0:14:02
132000 -- (-2227.566) (-2239.571) (-2223.956) [-2234.217] * (-2234.162) (-2228.637) [-2215.547] (-2231.395) -- 0:14:01
133000 -- (-2221.810) (-2235.891) [-2216.682] (-2239.002) * (-2229.961) (-2233.480) (-2219.501) [-2220.581] -- 0:14:00
134000 -- (-2217.500) (-2221.762) [-2217.176] (-2235.165) * [-2211.942] (-2217.370) (-2243.897) (-2226.285) -- 0:14:00
135000 -- (-2224.131) [-2213.326] (-2233.794) (-2220.982) * (-2229.486) [-2232.136] (-2214.482) (-2227.867) -- 0:13:59
Average standard deviation of split frequencies: 0.019490
136000 -- (-2212.654) (-2217.992) (-2235.162) [-2222.086] * (-2229.021) (-2216.390) (-2222.499) [-2216.337] -- 0:13:58
137000 -- (-2232.608) [-2227.670] (-2229.756) (-2222.905) * (-2233.845) (-2236.545) [-2203.328] (-2221.179) -- 0:13:57
138000 -- (-2233.386) (-2230.318) [-2202.777] (-2237.894) * (-2228.064) (-2218.307) (-2208.926) [-2214.822] -- 0:13:57
139000 -- (-2232.546) (-2228.173) [-2215.704] (-2220.607) * (-2236.672) (-2233.641) (-2232.862) [-2217.669] -- 0:13:56
140000 -- (-2236.811) (-2219.855) (-2231.547) [-2207.245] * (-2219.566) (-2225.970) [-2213.696] (-2216.010) -- 0:13:55
Average standard deviation of split frequencies: 0.020331
141000 -- (-2230.108) (-2213.298) [-2219.423] (-2221.002) * (-2231.324) [-2215.552] (-2231.148) (-2217.144) -- 0:13:54
142000 -- (-2222.875) (-2224.126) [-2216.320] (-2246.665) * [-2216.562] (-2220.136) (-2212.210) (-2219.385) -- 0:13:53
143000 -- (-2217.120) (-2232.631) [-2218.520] (-2216.539) * (-2230.840) [-2209.140] (-2220.520) (-2220.254) -- 0:13:53
144000 -- [-2225.149] (-2227.764) (-2245.465) (-2216.289) * (-2220.658) (-2214.635) (-2226.256) [-2211.016] -- 0:13:46
145000 -- (-2215.358) (-2232.612) [-2213.814] (-2229.561) * (-2246.296) (-2218.781) [-2225.051] (-2254.850) -- 0:13:45
Average standard deviation of split frequencies: 0.018530
146000 -- (-2231.469) (-2209.168) [-2220.614] (-2230.070) * (-2237.078) [-2220.516] (-2220.908) (-2251.029) -- 0:13:44
147000 -- (-2240.742) [-2211.328] (-2216.545) (-2224.421) * (-2237.038) (-2216.404) [-2208.656] (-2246.694) -- 0:13:43
148000 -- (-2256.984) [-2212.797] (-2222.939) (-2219.020) * [-2216.095] (-2227.192) (-2214.639) (-2245.268) -- 0:13:43
149000 -- (-2232.416) (-2234.179) (-2215.265) [-2219.833] * [-2207.251] (-2218.538) (-2225.361) (-2222.121) -- 0:13:42
150000 -- [-2230.964] (-2231.720) (-2217.808) (-2224.532) * [-2210.680] (-2221.716) (-2228.281) (-2217.265) -- 0:13:41
Average standard deviation of split frequencies: 0.018326
151000 -- (-2227.104) (-2231.296) [-2207.898] (-2223.383) * (-2220.167) (-2232.697) (-2235.700) [-2218.489] -- 0:13:40
152000 -- (-2247.653) [-2214.246] (-2222.774) (-2221.647) * (-2233.588) (-2240.597) (-2243.254) [-2219.207] -- 0:13:40
153000 -- (-2252.861) [-2216.713] (-2202.495) (-2224.939) * (-2224.542) (-2251.125) (-2249.217) [-2219.850] -- 0:13:39
154000 -- (-2235.857) (-2217.324) [-2202.993] (-2220.985) * (-2230.386) (-2242.122) (-2227.012) [-2205.686] -- 0:13:38
155000 -- (-2230.219) (-2207.096) [-2216.046] (-2217.301) * [-2213.424] (-2233.529) (-2228.403) (-2222.109) -- 0:13:37
Average standard deviation of split frequencies: 0.018754
156000 -- (-2225.666) (-2246.639) [-2224.538] (-2223.715) * (-2230.786) [-2214.392] (-2235.902) (-2224.710) -- 0:13:36
157000 -- (-2254.751) (-2220.590) (-2211.370) [-2211.347] * (-2223.786) (-2207.664) (-2238.094) [-2212.137] -- 0:13:36
158000 -- (-2221.582) (-2219.864) [-2221.432] (-2219.767) * (-2217.929) [-2205.092] (-2224.519) (-2224.398) -- 0:13:35
159000 -- (-2233.978) (-2221.215) [-2221.102] (-2231.377) * [-2213.382] (-2207.999) (-2223.354) (-2230.251) -- 0:13:34
160000 -- (-2246.618) [-2213.322] (-2219.917) (-2214.317) * [-2224.177] (-2234.504) (-2239.274) (-2221.154) -- 0:13:33
Average standard deviation of split frequencies: 0.019886
161000 -- (-2236.115) (-2230.543) (-2222.596) [-2215.451] * (-2229.083) (-2234.650) (-2221.633) [-2212.358] -- 0:13:32
162000 -- (-2229.580) [-2219.649] (-2211.877) (-2228.502) * [-2206.880] (-2229.547) (-2233.897) (-2221.142) -- 0:13:32
163000 -- (-2224.272) [-2220.356] (-2218.021) (-2220.110) * [-2215.283] (-2251.505) (-2213.570) (-2216.234) -- 0:13:31
164000 -- (-2250.235) (-2233.173) (-2214.084) [-2221.189] * (-2229.457) (-2219.412) (-2217.756) [-2221.102] -- 0:13:30
165000 -- (-2234.459) (-2229.673) [-2222.713] (-2202.192) * (-2213.098) (-2215.041) [-2216.027] (-2215.101) -- 0:13:29
Average standard deviation of split frequencies: 0.018208
166000 -- (-2249.651) (-2236.390) [-2216.071] (-2218.100) * (-2239.868) (-2211.273) (-2231.461) [-2219.691] -- 0:13:28
167000 -- (-2224.234) (-2236.516) [-2207.945] (-2225.676) * (-2226.787) (-2217.940) [-2225.023] (-2226.760) -- 0:13:23
168000 -- (-2222.054) [-2233.839] (-2217.825) (-2222.247) * (-2222.342) (-2220.526) [-2206.073] (-2225.277) -- 0:13:22
169000 -- (-2219.639) (-2240.578) [-2218.489] (-2212.403) * [-2221.865] (-2221.058) (-2216.204) (-2230.237) -- 0:13:21
170000 -- (-2218.461) (-2220.994) (-2220.420) [-2211.438] * (-2226.241) (-2207.109) (-2222.973) [-2218.547] -- 0:13:20
Average standard deviation of split frequencies: 0.016961
171000 -- [-2207.491] (-2228.641) (-2223.991) (-2218.063) * (-2239.291) [-2207.276] (-2217.896) (-2231.559) -- 0:13:19
172000 -- (-2232.400) [-2232.253] (-2216.954) (-2213.532) * [-2218.001] (-2237.276) (-2217.100) (-2226.704) -- 0:13:19
173000 -- [-2212.315] (-2227.609) (-2230.278) (-2234.450) * (-2221.629) (-2220.915) (-2227.069) [-2216.645] -- 0:13:18
174000 -- [-2222.781] (-2231.380) (-2233.353) (-2210.186) * (-2222.493) (-2214.316) (-2206.955) [-2224.136] -- 0:13:17
175000 -- (-2234.448) (-2229.412) [-2206.325] (-2212.761) * (-2228.176) (-2224.317) [-2209.609] (-2229.667) -- 0:13:16
Average standard deviation of split frequencies: 0.017033
176000 -- (-2216.978) (-2216.490) (-2224.882) [-2206.059] * [-2217.022] (-2225.707) (-2214.289) (-2231.079) -- 0:13:15
177000 -- (-2245.003) (-2234.194) (-2220.146) [-2209.725] * (-2241.945) (-2211.820) (-2225.519) [-2207.903] -- 0:13:15
178000 -- (-2231.666) (-2219.531) (-2248.379) [-2226.435] * (-2233.092) (-2226.254) [-2220.668] (-2219.202) -- 0:13:14
179000 -- [-2209.896] (-2239.777) (-2235.352) (-2226.949) * (-2228.861) (-2223.287) (-2216.238) [-2216.322] -- 0:13:13
180000 -- (-2217.679) (-2233.726) [-2228.431] (-2213.171) * (-2248.214) (-2238.861) (-2219.657) [-2224.697] -- 0:13:12
Average standard deviation of split frequencies: 0.018054
181000 -- (-2221.109) (-2230.618) [-2216.831] (-2223.945) * (-2228.202) (-2227.827) [-2212.168] (-2243.087) -- 0:13:11
182000 -- (-2241.875) [-2227.220] (-2217.146) (-2230.015) * (-2248.765) (-2221.620) (-2218.514) [-2224.108] -- 0:13:11
183000 -- (-2235.253) (-2225.313) [-2230.427] (-2222.302) * (-2241.589) (-2223.273) (-2226.020) [-2211.384] -- 0:13:10
184000 -- (-2232.137) (-2235.749) [-2218.636] (-2212.052) * (-2234.053) (-2215.974) [-2198.704] (-2225.509) -- 0:13:09
185000 -- [-2216.070] (-2237.793) (-2228.230) (-2218.011) * (-2221.909) (-2225.756) (-2219.556) [-2217.678] -- 0:13:08
Average standard deviation of split frequencies: 0.016871
186000 -- [-2218.102] (-2225.687) (-2235.407) (-2216.133) * [-2212.234] (-2222.380) (-2214.985) (-2241.913) -- 0:13:07
187000 -- (-2217.788) [-2213.535] (-2225.946) (-2234.760) * (-2227.558) (-2226.307) [-2221.629] (-2236.809) -- 0:13:06
188000 -- (-2234.000) (-2213.552) (-2222.597) [-2210.170] * (-2216.811) [-2221.709] (-2230.158) (-2218.612) -- 0:13:06
189000 -- (-2243.017) (-2211.444) (-2234.381) [-2208.687] * (-2234.481) (-2230.215) [-2225.177] (-2225.601) -- 0:13:05
190000 -- (-2228.416) (-2231.985) [-2206.278] (-2199.000) * (-2225.193) (-2237.462) (-2221.701) [-2217.803] -- 0:13:04
Average standard deviation of split frequencies: 0.017423
191000 -- (-2248.813) [-2224.574] (-2219.492) (-2226.445) * [-2207.406] (-2232.675) (-2219.998) (-2218.656) -- 0:13:03
192000 -- (-2240.436) (-2214.228) (-2232.468) [-2211.933] * [-2212.713] (-2226.421) (-2225.310) (-2234.686) -- 0:13:02
193000 -- (-2231.630) (-2233.302) [-2214.283] (-2213.002) * [-2212.063] (-2221.358) (-2216.874) (-2232.766) -- 0:13:01
194000 -- (-2223.989) [-2217.790] (-2227.549) (-2220.646) * [-2231.511] (-2234.780) (-2226.691) (-2225.969) -- 0:13:01
195000 -- (-2243.235) (-2225.851) (-2230.129) [-2219.251] * (-2229.043) [-2229.404] (-2221.788) (-2226.155) -- 0:13:00
Average standard deviation of split frequencies: 0.016645
196000 -- (-2231.384) (-2218.988) [-2227.909] (-2212.110) * (-2224.388) (-2225.185) (-2219.556) [-2208.489] -- 0:12:59
197000 -- (-2234.770) (-2216.853) (-2220.051) [-2200.924] * (-2213.816) (-2232.392) [-2215.567] (-2241.510) -- 0:12:58
198000 -- [-2213.673] (-2230.190) (-2214.590) (-2218.962) * (-2217.762) [-2216.307] (-2218.971) (-2224.402) -- 0:12:57
199000 -- [-2207.033] (-2240.653) (-2224.185) (-2235.533) * [-2213.212] (-2213.504) (-2239.361) (-2245.318) -- 0:12:56
200000 -- [-2219.360] (-2227.060) (-2233.750) (-2231.491) * (-2241.877) [-2208.343] (-2234.499) (-2223.044) -- 0:12:56
Average standard deviation of split frequencies: 0.016065
201000 -- (-2235.006) [-2223.242] (-2240.695) (-2236.001) * [-2212.678] (-2225.405) (-2250.377) (-2223.219) -- 0:12:55
202000 -- (-2244.882) [-2213.128] (-2242.534) (-2230.753) * (-2213.497) (-2217.627) (-2231.342) [-2213.073] -- 0:12:54
203000 -- (-2236.705) [-2214.573] (-2214.745) (-2248.270) * (-2221.035) (-2232.214) (-2232.700) [-2212.651] -- 0:12:49
204000 -- (-2226.525) [-2228.398] (-2232.827) (-2225.736) * (-2221.456) (-2221.768) (-2220.914) [-2212.795] -- 0:12:48
205000 -- (-2237.564) (-2216.149) (-2239.996) [-2219.166] * (-2221.299) (-2226.301) (-2226.010) [-2219.817] -- 0:12:47
Average standard deviation of split frequencies: 0.014505
206000 -- [-2216.487] (-2221.813) (-2218.279) (-2211.081) * (-2231.941) (-2227.682) (-2227.568) [-2224.773] -- 0:12:47
207000 -- (-2228.912) (-2225.751) [-2217.065] (-2208.555) * (-2224.832) (-2232.705) [-2227.167] (-2229.575) -- 0:12:46
208000 -- [-2221.626] (-2218.736) (-2231.697) (-2222.696) * (-2239.563) [-2220.770] (-2212.849) (-2229.812) -- 0:12:45
209000 -- (-2224.615) (-2211.756) (-2237.887) [-2219.357] * (-2225.495) [-2220.386] (-2216.044) (-2220.565) -- 0:12:44
210000 -- [-2219.828] (-2209.417) (-2211.675) (-2209.976) * [-2208.897] (-2232.063) (-2229.566) (-2228.020) -- 0:12:43
Average standard deviation of split frequencies: 0.014825
211000 -- (-2228.448) (-2220.793) (-2220.199) [-2224.919] * (-2220.296) (-2225.437) [-2213.471] (-2231.125) -- 0:12:42
212000 -- (-2221.970) (-2216.528) (-2220.187) [-2207.356] * [-2223.196] (-2227.602) (-2239.209) (-2229.013) -- 0:12:41
213000 -- [-2217.706] (-2232.798) (-2235.978) (-2227.663) * (-2209.960) (-2227.728) (-2219.936) [-2218.164] -- 0:12:41
214000 -- (-2226.254) (-2224.871) (-2223.098) [-2205.529] * (-2209.940) [-2216.721] (-2243.250) (-2234.188) -- 0:12:40
215000 -- (-2222.803) (-2219.403) (-2234.898) [-2211.499] * (-2209.920) (-2228.218) [-2213.821] (-2233.337) -- 0:12:39
Average standard deviation of split frequencies: 0.013953
216000 -- (-2214.566) (-2238.095) (-2245.823) [-2221.047] * (-2217.355) (-2212.965) [-2217.520] (-2239.226) -- 0:12:38
217000 -- (-2217.482) [-2212.745] (-2230.799) (-2220.730) * (-2231.560) (-2212.781) [-2209.152] (-2231.549) -- 0:12:37
218000 -- (-2230.471) (-2217.042) (-2252.597) [-2217.855] * (-2209.566) (-2206.024) (-2226.776) [-2223.290] -- 0:12:36
219000 -- (-2216.007) (-2218.509) (-2238.399) [-2227.352] * (-2230.269) (-2236.963) (-2225.954) [-2222.248] -- 0:12:36
220000 -- (-2227.876) [-2221.813] (-2227.250) (-2206.193) * (-2227.392) (-2224.868) [-2219.229] (-2224.326) -- 0:12:35
Average standard deviation of split frequencies: 0.014990
221000 -- (-2219.598) (-2231.754) [-2213.952] (-2237.723) * (-2227.260) [-2217.807] (-2222.075) (-2225.582) -- 0:12:34
222000 -- (-2241.780) (-2221.969) [-2202.432] (-2230.300) * (-2228.898) (-2208.244) (-2221.847) [-2216.777] -- 0:12:33
223000 -- (-2222.515) (-2220.706) [-2225.022] (-2256.395) * (-2230.747) (-2221.284) (-2217.606) [-2211.046] -- 0:12:32
224000 -- (-2221.511) (-2225.894) [-2218.379] (-2228.193) * [-2223.954] (-2212.479) (-2244.619) (-2217.285) -- 0:12:31
225000 -- (-2249.477) (-2215.262) (-2220.457) [-2213.093] * (-2221.737) [-2218.688] (-2231.042) (-2229.683) -- 0:12:30
Average standard deviation of split frequencies: 0.013721
226000 -- (-2221.318) (-2218.651) [-2220.279] (-2232.945) * [-2202.226] (-2218.897) (-2239.375) (-2222.235) -- 0:12:30
227000 -- (-2236.746) (-2228.885) [-2227.299] (-2216.356) * [-2220.166] (-2237.089) (-2263.938) (-2224.893) -- 0:12:29
228000 -- (-2230.650) (-2227.738) [-2212.840] (-2219.713) * (-2243.328) (-2224.873) (-2250.363) [-2216.732] -- 0:12:24
229000 -- (-2223.057) [-2212.833] (-2221.427) (-2221.955) * (-2232.483) [-2220.799] (-2225.851) (-2216.926) -- 0:12:24
230000 -- (-2213.026) [-2216.661] (-2229.389) (-2217.110) * (-2233.568) [-2218.838] (-2237.659) (-2225.796) -- 0:12:23
Average standard deviation of split frequencies: 0.013334
231000 -- (-2218.926) (-2230.782) [-2226.930] (-2227.486) * (-2229.858) [-2211.747] (-2228.060) (-2226.990) -- 0:12:22
232000 -- (-2235.841) (-2216.545) [-2218.876] (-2237.123) * (-2235.521) (-2223.894) [-2217.990] (-2232.652) -- 0:12:21
233000 -- (-2231.985) (-2226.308) (-2244.125) [-2212.533] * [-2212.036] (-2235.939) (-2221.745) (-2212.458) -- 0:12:20
234000 -- (-2229.832) (-2232.494) (-2225.319) [-2220.689] * (-2212.382) (-2226.291) (-2226.029) [-2215.951] -- 0:12:19
235000 -- (-2214.117) (-2221.573) [-2216.823] (-2242.090) * [-2218.785] (-2224.169) (-2237.563) (-2211.786) -- 0:12:18
Average standard deviation of split frequencies: 0.013951
236000 -- (-2239.935) (-2221.818) [-2213.206] (-2218.024) * (-2239.598) (-2219.936) (-2215.374) [-2212.853] -- 0:12:18
237000 -- (-2218.488) [-2221.794] (-2219.596) (-2218.129) * (-2230.472) (-2265.336) (-2205.850) [-2216.365] -- 0:12:17
238000 -- [-2225.768] (-2228.257) (-2215.768) (-2220.148) * (-2229.158) (-2242.165) (-2214.283) [-2215.570] -- 0:12:16
239000 -- (-2227.881) (-2226.268) [-2214.442] (-2216.246) * (-2248.584) [-2228.163] (-2223.855) (-2246.465) -- 0:12:15
240000 -- (-2223.017) [-2214.318] (-2222.133) (-2228.591) * (-2233.276) [-2206.098] (-2236.622) (-2220.549) -- 0:12:14
Average standard deviation of split frequencies: 0.013838
241000 -- (-2210.277) (-2231.997) (-2221.350) [-2225.464] * [-2230.773] (-2217.481) (-2225.015) (-2242.222) -- 0:12:13
242000 -- [-2207.033] (-2225.637) (-2212.729) (-2238.293) * (-2224.370) [-2221.164] (-2229.335) (-2221.884) -- 0:12:12
243000 -- (-2221.510) [-2216.991] (-2217.047) (-2229.254) * (-2244.326) (-2214.907) (-2245.971) [-2210.871] -- 0:12:12
244000 -- (-2217.278) (-2237.903) (-2234.648) [-2200.657] * [-2232.652] (-2208.371) (-2220.570) (-2227.917) -- 0:12:11
245000 -- (-2234.119) (-2241.983) [-2216.865] (-2236.099) * (-2230.726) (-2219.120) (-2215.819) [-2227.002] -- 0:12:10
Average standard deviation of split frequencies: 0.013931
246000 -- [-2239.667] (-2223.434) (-2238.165) (-2236.111) * (-2231.487) [-2215.634] (-2222.670) (-2246.760) -- 0:12:09
247000 -- (-2211.476) (-2226.116) [-2215.335] (-2229.978) * (-2237.259) (-2217.936) [-2228.510] (-2217.748) -- 0:12:08
248000 -- (-2217.518) [-2215.728] (-2227.441) (-2227.227) * (-2234.524) (-2219.951) [-2221.622] (-2223.694) -- 0:12:07
249000 -- [-2220.686] (-2237.785) (-2216.325) (-2239.441) * [-2213.004] (-2233.012) (-2235.522) (-2246.923) -- 0:12:03
250000 -- (-2221.839) (-2225.495) [-2214.902] (-2232.283) * [-2215.524] (-2227.140) (-2226.108) (-2222.522) -- 0:12:06
Average standard deviation of split frequencies: 0.013741
251000 -- (-2235.190) (-2223.215) [-2213.783] (-2235.801) * (-2230.639) [-2208.187] (-2237.022) (-2233.291) -- 0:12:05
252000 -- (-2232.136) (-2247.129) [-2217.028] (-2224.601) * [-2220.424] (-2234.279) (-2242.277) (-2216.485) -- 0:12:04
253000 -- (-2221.873) (-2238.907) [-2211.823] (-2240.836) * (-2248.196) [-2211.788] (-2229.546) (-2219.677) -- 0:12:00
254000 -- (-2214.143) (-2242.156) [-2193.895] (-2217.260) * (-2232.357) (-2237.771) [-2225.226] (-2219.077) -- 0:11:59
255000 -- [-2215.235] (-2217.328) (-2215.342) (-2225.908) * (-2230.953) (-2220.846) [-2214.531] (-2240.600) -- 0:11:58
Average standard deviation of split frequencies: 0.013639
256000 -- [-2217.823] (-2229.009) (-2221.278) (-2228.056) * (-2241.247) (-2237.299) [-2204.414] (-2219.511) -- 0:11:57
257000 -- (-2229.730) (-2240.341) [-2224.012] (-2211.315) * (-2219.315) (-2221.369) [-2205.910] (-2228.049) -- 0:11:56
258000 -- [-2208.593] (-2237.050) (-2258.579) (-2208.994) * [-2221.182] (-2228.284) (-2220.931) (-2227.243) -- 0:11:56
259000 -- [-2204.745] (-2246.385) (-2222.186) (-2226.268) * [-2217.619] (-2217.013) (-2229.065) (-2227.347) -- 0:11:55
260000 -- [-2220.215] (-2236.469) (-2226.972) (-2220.537) * (-2211.465) [-2214.497] (-2239.813) (-2224.021) -- 0:11:54
Average standard deviation of split frequencies: 0.014257
261000 -- (-2227.153) (-2231.309) (-2222.255) [-2211.943] * (-2235.289) (-2221.770) (-2232.261) [-2217.422] -- 0:11:53
262000 -- (-2234.756) [-2216.024] (-2234.592) (-2222.636) * (-2229.454) [-2216.634] (-2220.838) (-2227.311) -- 0:11:52
263000 -- (-2240.730) (-2221.389) [-2215.996] (-2221.302) * [-2219.245] (-2226.214) (-2227.331) (-2230.104) -- 0:11:51
264000 -- (-2244.981) (-2224.149) [-2218.409] (-2218.515) * (-2219.186) (-2236.790) [-2226.746] (-2239.004) -- 0:11:50
265000 -- [-2218.211] (-2240.467) (-2226.275) (-2224.133) * (-2225.489) (-2228.092) [-2226.827] (-2226.461) -- 0:11:50
Average standard deviation of split frequencies: 0.013372
266000 -- (-2234.957) (-2221.189) [-2226.916] (-2227.980) * (-2242.980) (-2231.184) [-2222.703] (-2234.429) -- 0:11:49
267000 -- (-2233.809) [-2219.014] (-2224.079) (-2231.328) * (-2231.060) (-2224.418) [-2229.982] (-2229.480) -- 0:11:48
268000 -- (-2235.033) (-2231.628) [-2229.407] (-2207.989) * [-2220.591] (-2229.153) (-2227.307) (-2221.832) -- 0:11:47
269000 -- (-2255.524) (-2226.776) (-2216.421) [-2228.155] * (-2219.267) [-2226.853] (-2243.155) (-2255.687) -- 0:11:46
270000 -- (-2233.609) (-2231.524) [-2219.294] (-2224.172) * [-2212.908] (-2235.968) (-2216.667) (-2244.260) -- 0:11:45
Average standard deviation of split frequencies: 0.012790
271000 -- (-2224.774) [-2211.878] (-2238.568) (-2225.565) * (-2222.088) [-2221.951] (-2226.832) (-2210.824) -- 0:11:44
272000 -- (-2223.532) [-2220.934] (-2241.539) (-2217.787) * (-2234.924) (-2216.672) [-2215.751] (-2222.272) -- 0:11:43
273000 -- (-2242.656) (-2231.450) (-2234.028) [-2208.763] * [-2216.232] (-2231.550) (-2239.302) (-2236.884) -- 0:11:43
274000 -- (-2235.218) [-2216.225] (-2245.056) (-2229.535) * [-2209.306] (-2230.697) (-2232.675) (-2225.663) -- 0:11:42
275000 -- [-2220.034] (-2225.855) (-2235.660) (-2230.399) * (-2220.142) (-2233.008) [-2228.484] (-2233.967) -- 0:11:41
Average standard deviation of split frequencies: 0.013276
276000 -- [-2217.816] (-2248.239) (-2216.754) (-2233.540) * (-2220.748) [-2225.459] (-2220.582) (-2229.715) -- 0:11:40
277000 -- [-2216.812] (-2242.424) (-2222.862) (-2229.699) * [-2207.134] (-2209.677) (-2224.747) (-2217.242) -- 0:11:39
278000 -- (-2239.794) (-2249.095) [-2229.052] (-2224.388) * [-2213.015] (-2231.519) (-2226.630) (-2220.716) -- 0:11:38
279000 -- (-2210.605) (-2236.663) [-2213.022] (-2205.078) * (-2233.746) (-2217.129) (-2232.671) [-2214.149] -- 0:11:37
280000 -- (-2224.974) [-2218.064] (-2232.573) (-2224.076) * (-2234.795) [-2224.390] (-2242.901) (-2228.805) -- 0:11:36
Average standard deviation of split frequencies: 0.013830
281000 -- (-2245.696) (-2209.391) (-2228.344) [-2217.319] * [-2207.343] (-2216.960) (-2233.578) (-2224.886) -- 0:11:35
282000 -- [-2227.189] (-2230.875) (-2224.273) (-2222.322) * (-2216.494) (-2213.624) (-2231.001) [-2207.109] -- 0:11:35
283000 -- (-2216.429) [-2224.229] (-2219.747) (-2210.461) * (-2232.501) (-2206.168) (-2232.059) [-2222.220] -- 0:11:34
284000 -- [-2229.287] (-2229.632) (-2222.241) (-2220.423) * (-2219.892) [-2214.247] (-2223.254) (-2229.891) -- 0:11:33
285000 -- (-2231.472) (-2223.586) [-2218.033] (-2231.030) * (-2220.937) (-2217.558) [-2217.578] (-2237.053) -- 0:11:32
Average standard deviation of split frequencies: 0.013801
286000 -- (-2242.355) (-2230.941) (-2214.518) [-2221.631] * (-2236.398) [-2220.491] (-2232.450) (-2223.341) -- 0:11:31
287000 -- (-2227.008) (-2229.105) [-2214.623] (-2245.518) * (-2227.415) [-2214.379] (-2235.961) (-2227.450) -- 0:11:30
288000 -- (-2221.953) [-2228.969] (-2220.708) (-2226.692) * (-2226.065) [-2215.097] (-2237.596) (-2245.332) -- 0:11:29
289000 -- (-2233.739) (-2225.833) (-2234.478) [-2217.518] * (-2218.880) (-2233.362) (-2230.119) [-2213.119] -- 0:11:28
290000 -- (-2233.168) (-2218.090) (-2242.983) [-2217.028] * (-2237.933) (-2229.846) [-2223.988] (-2230.962) -- 0:11:27
Average standard deviation of split frequencies: 0.013498
291000 -- (-2238.520) (-2214.613) (-2237.131) [-2215.283] * (-2229.136) (-2224.824) (-2239.293) [-2204.456] -- 0:11:24
292000 -- (-2241.203) (-2244.692) [-2225.505] (-2210.391) * (-2240.413) (-2238.702) (-2219.740) [-2224.390] -- 0:11:23
293000 -- (-2223.956) (-2232.227) [-2210.377] (-2217.927) * (-2212.688) (-2261.843) (-2218.455) [-2217.552] -- 0:11:22
294000 -- (-2244.814) (-2233.309) [-2215.781] (-2203.639) * (-2214.021) (-2245.940) [-2214.121] (-2230.596) -- 0:11:21
295000 -- (-2222.350) (-2231.231) (-2239.914) [-2209.071] * (-2222.172) [-2227.700] (-2223.750) (-2231.230) -- 0:11:21
Average standard deviation of split frequencies: 0.013427
296000 -- (-2227.300) (-2227.149) (-2252.560) [-2214.383] * [-2206.358] (-2260.990) (-2225.760) (-2228.899) -- 0:11:20
297000 -- (-2233.970) (-2238.303) [-2230.497] (-2221.548) * [-2208.416] (-2236.475) (-2232.056) (-2233.566) -- 0:11:19
298000 -- (-2223.457) [-2217.935] (-2235.064) (-2215.324) * (-2222.905) [-2216.053] (-2223.656) (-2237.032) -- 0:11:18
299000 -- (-2240.955) (-2214.967) [-2209.925] (-2210.337) * [-2217.881] (-2239.252) (-2221.014) (-2244.503) -- 0:11:17
300000 -- (-2228.280) [-2215.527] (-2213.461) (-2223.471) * [-2213.832] (-2216.148) (-2214.502) (-2222.539) -- 0:11:16
Average standard deviation of split frequencies: 0.012739
301000 -- (-2219.226) (-2223.219) [-2205.247] (-2230.192) * [-2225.950] (-2235.693) (-2231.675) (-2207.292) -- 0:11:15
302000 -- (-2220.378) [-2218.564] (-2205.322) (-2210.569) * (-2220.640) (-2220.813) (-2213.964) [-2217.567] -- 0:11:14
303000 -- [-2222.308] (-2226.892) (-2207.765) (-2224.737) * (-2218.002) [-2220.654] (-2234.989) (-2226.497) -- 0:11:13
304000 -- (-2228.801) (-2228.303) (-2233.484) [-2210.716] * (-2209.261) (-2229.128) (-2236.291) [-2223.154] -- 0:11:13
305000 -- (-2245.512) (-2227.893) [-2221.255] (-2215.476) * (-2223.296) (-2220.493) (-2218.306) [-2220.224] -- 0:11:12
Average standard deviation of split frequencies: 0.011857
306000 -- [-2218.259] (-2234.861) (-2222.075) (-2221.237) * (-2228.131) [-2220.418] (-2215.730) (-2251.090) -- 0:11:11
307000 -- (-2216.100) (-2222.872) (-2238.833) [-2214.264] * (-2237.200) [-2218.249] (-2215.531) (-2236.922) -- 0:11:10
308000 -- [-2204.338] (-2228.769) (-2231.803) (-2232.176) * (-2225.915) (-2217.329) [-2213.606] (-2247.757) -- 0:11:09
309000 -- (-2226.567) (-2243.257) (-2224.295) [-2217.731] * (-2234.304) [-2214.427] (-2221.808) (-2230.805) -- 0:11:08
310000 -- (-2219.606) (-2239.774) [-2222.371] (-2215.745) * (-2213.946) (-2225.514) [-2208.199] (-2247.923) -- 0:11:07
Average standard deviation of split frequencies: 0.010760
311000 -- [-2220.925] (-2231.094) (-2257.275) (-2233.914) * (-2243.965) (-2220.749) [-2206.840] (-2209.522) -- 0:11:06
312000 -- (-2237.654) (-2226.841) [-2221.965] (-2232.210) * (-2221.410) (-2227.300) (-2230.317) [-2208.070] -- 0:11:05
313000 -- (-2213.673) (-2221.255) (-2245.705) [-2214.968] * (-2219.069) [-2200.741] (-2211.635) (-2211.326) -- 0:11:05
314000 -- [-2208.877] (-2227.001) (-2238.836) (-2238.854) * [-2215.672] (-2208.306) (-2228.964) (-2232.894) -- 0:11:01
315000 -- [-2224.472] (-2231.694) (-2230.812) (-2223.701) * (-2226.829) (-2225.215) [-2218.623] (-2229.262) -- 0:11:01
Average standard deviation of split frequencies: 0.011223
316000 -- (-2216.668) (-2227.064) (-2210.434) [-2222.289] * (-2236.000) (-2240.824) [-2217.023] (-2227.138) -- 0:11:00
317000 -- (-2217.011) (-2233.797) (-2223.753) [-2215.064] * (-2224.111) (-2239.043) [-2220.194] (-2219.611) -- 0:10:59
318000 -- [-2215.611] (-2237.801) (-2229.524) (-2230.147) * (-2232.358) [-2223.056] (-2221.520) (-2222.187) -- 0:10:58
319000 -- (-2215.209) [-2216.910] (-2225.784) (-2222.645) * [-2224.697] (-2239.754) (-2217.012) (-2231.874) -- 0:10:57
320000 -- (-2223.803) (-2215.550) [-2213.516] (-2211.992) * (-2218.061) (-2232.597) [-2217.603] (-2213.837) -- 0:10:56
Average standard deviation of split frequencies: 0.010558
321000 -- (-2227.264) (-2243.397) [-2212.081] (-2212.891) * (-2224.940) [-2225.225] (-2247.852) (-2222.952) -- 0:10:55
322000 -- (-2232.645) (-2222.979) [-2213.875] (-2222.145) * (-2230.994) [-2223.803] (-2235.725) (-2212.395) -- 0:10:54
323000 -- (-2221.757) [-2208.604] (-2221.802) (-2208.398) * (-2221.593) [-2212.005] (-2242.848) (-2216.259) -- 0:10:53
324000 -- (-2229.203) (-2211.200) (-2251.325) [-2206.171] * (-2221.834) (-2222.865) (-2244.086) [-2206.841] -- 0:10:53
325000 -- (-2207.695) [-2211.509] (-2237.866) (-2233.445) * (-2216.398) [-2219.615] (-2230.515) (-2229.543) -- 0:10:52
Average standard deviation of split frequencies: 0.009859
326000 -- [-2220.169] (-2224.171) (-2235.641) (-2231.424) * (-2227.146) (-2228.784) [-2231.228] (-2225.430) -- 0:10:51
327000 -- (-2207.481) (-2210.861) [-2213.736] (-2246.980) * (-2214.762) [-2218.384] (-2233.845) (-2221.319) -- 0:10:50
328000 -- (-2224.282) [-2203.805] (-2221.821) (-2249.586) * [-2205.131] (-2234.791) (-2231.722) (-2212.822) -- 0:10:49
329000 -- (-2227.525) (-2212.010) (-2229.899) [-2220.312] * (-2216.041) (-2218.606) (-2231.760) [-2209.624] -- 0:10:48
330000 -- (-2213.112) [-2218.421] (-2246.323) (-2243.641) * (-2211.034) [-2217.157] (-2229.884) (-2220.965) -- 0:10:47
Average standard deviation of split frequencies: 0.009190
331000 -- (-2216.207) [-2206.546] (-2219.277) (-2224.546) * [-2209.819] (-2221.753) (-2229.725) (-2238.198) -- 0:10:46
332000 -- [-2219.803] (-2216.085) (-2204.117) (-2228.430) * [-2211.312] (-2227.646) (-2213.296) (-2224.590) -- 0:10:45
333000 -- (-2226.941) (-2216.745) [-2214.106] (-2213.922) * (-2235.409) (-2244.119) [-2218.941] (-2202.751) -- 0:10:44
334000 -- (-2245.123) (-2218.898) [-2209.430] (-2235.916) * (-2238.727) [-2223.964] (-2223.035) (-2205.624) -- 0:10:44
335000 -- (-2220.156) (-2225.331) [-2215.429] (-2237.162) * (-2230.874) (-2229.071) [-2226.407] (-2243.969) -- 0:10:43
Average standard deviation of split frequencies: 0.008757
336000 -- (-2232.246) (-2224.245) [-2223.752] (-2233.858) * (-2209.910) [-2225.502] (-2214.717) (-2228.149) -- 0:10:42
337000 -- (-2229.548) (-2231.390) (-2227.769) [-2223.534] * [-2221.995] (-2231.861) (-2225.551) (-2219.213) -- 0:10:41
338000 -- (-2222.700) (-2223.393) [-2205.278] (-2212.640) * (-2256.908) [-2209.453] (-2242.538) (-2221.235) -- 0:10:40
339000 -- (-2227.292) [-2212.684] (-2209.617) (-2225.418) * (-2241.169) [-2215.053] (-2242.995) (-2222.968) -- 0:10:37
340000 -- (-2249.206) [-2213.962] (-2201.183) (-2234.745) * (-2223.757) [-2204.025] (-2253.490) (-2221.981) -- 0:10:36
Average standard deviation of split frequencies: 0.008698
341000 -- (-2219.101) [-2204.907] (-2228.536) (-2239.573) * [-2230.007] (-2217.607) (-2232.709) (-2242.503) -- 0:10:35
342000 -- (-2234.408) (-2210.888) [-2232.214] (-2216.897) * (-2217.910) (-2228.414) (-2225.857) [-2216.899] -- 0:10:34
343000 -- (-2227.635) (-2213.522) (-2233.288) [-2212.498] * [-2222.676] (-2213.573) (-2221.601) (-2259.751) -- 0:10:34
344000 -- (-2226.578) (-2246.454) [-2213.846] (-2222.407) * (-2246.417) (-2214.733) [-2215.874] (-2248.625) -- 0:10:33
345000 -- [-2220.330] (-2252.004) (-2228.897) (-2218.416) * (-2221.052) (-2218.412) [-2213.448] (-2236.362) -- 0:10:32
Average standard deviation of split frequencies: 0.009166
346000 -- (-2223.627) (-2232.132) (-2223.179) [-2221.077] * (-2253.825) (-2218.558) (-2238.007) [-2214.491] -- 0:10:31
347000 -- (-2241.925) (-2231.751) (-2214.852) [-2222.532] * (-2213.533) [-2215.852] (-2230.565) (-2218.407) -- 0:10:30
348000 -- (-2221.924) (-2218.632) [-2207.804] (-2205.841) * (-2236.914) (-2211.261) (-2218.474) [-2208.951] -- 0:10:29
349000 -- (-2216.993) [-2218.709] (-2235.310) (-2221.707) * (-2231.571) (-2216.249) [-2212.794] (-2224.085) -- 0:10:28
350000 -- [-2223.949] (-2231.577) (-2221.844) (-2213.450) * (-2217.655) [-2217.656] (-2230.574) (-2223.313) -- 0:10:27
Average standard deviation of split frequencies: 0.008909
351000 -- [-2231.588] (-2222.477) (-2236.160) (-2230.374) * (-2227.389) [-2205.931] (-2248.468) (-2231.090) -- 0:10:26
352000 -- (-2244.708) (-2239.590) [-2212.332] (-2209.783) * [-2203.111] (-2220.664) (-2223.945) (-2230.102) -- 0:10:25
353000 -- (-2234.072) (-2246.822) [-2218.925] (-2231.622) * (-2213.144) (-2228.588) [-2231.245] (-2249.661) -- 0:10:25
354000 -- (-2243.406) [-2230.945] (-2230.422) (-2215.011) * (-2226.426) (-2217.863) (-2215.282) [-2223.216] -- 0:10:24
355000 -- [-2225.721] (-2228.335) (-2217.058) (-2215.858) * [-2221.533] (-2226.489) (-2213.335) (-2238.331) -- 0:10:23
Average standard deviation of split frequencies: 0.008658
356000 -- (-2243.382) (-2229.176) (-2234.856) [-2217.305] * (-2225.694) [-2230.248] (-2231.298) (-2224.968) -- 0:10:22
357000 -- (-2242.958) (-2234.080) (-2220.390) [-2215.870] * [-2222.108] (-2237.786) (-2234.432) (-2238.674) -- 0:10:21
358000 -- (-2244.440) (-2225.856) (-2219.006) [-2219.225] * (-2224.298) [-2218.989] (-2243.769) (-2236.732) -- 0:10:20
359000 -- (-2241.016) (-2226.148) [-2211.680] (-2216.816) * (-2220.843) [-2221.690] (-2229.387) (-2227.237) -- 0:10:19
360000 -- [-2207.640] (-2240.505) (-2237.161) (-2212.648) * (-2219.045) (-2216.973) (-2220.858) [-2219.415] -- 0:10:18
Average standard deviation of split frequencies: 0.008385
361000 -- (-2216.645) (-2252.709) (-2223.534) [-2223.067] * (-2220.482) (-2226.528) (-2229.211) [-2218.351] -- 0:10:17
362000 -- (-2233.477) (-2224.975) (-2217.034) [-2233.445] * (-2228.069) (-2221.209) [-2224.475] (-2220.067) -- 0:10:16
363000 -- [-2221.768] (-2226.674) (-2213.718) (-2230.472) * (-2236.161) (-2226.869) [-2217.717] (-2230.555) -- 0:10:15
364000 -- (-2243.143) (-2232.246) [-2204.351] (-2244.852) * (-2236.345) (-2214.444) [-2206.181] (-2228.600) -- 0:10:15
365000 -- (-2242.353) (-2231.230) [-2218.106] (-2241.881) * (-2242.123) (-2222.441) [-2214.922] (-2225.825) -- 0:10:14
Average standard deviation of split frequencies: 0.008070
366000 -- (-2220.342) (-2228.222) [-2213.122] (-2236.468) * (-2235.348) (-2232.279) [-2214.518] (-2228.022) -- 0:10:13
367000 -- (-2236.902) (-2219.251) [-2205.544] (-2199.394) * (-2233.627) (-2211.571) (-2234.827) [-2229.470] -- 0:10:12
368000 -- (-2232.211) (-2248.126) (-2228.392) [-2206.506] * (-2216.054) (-2225.182) (-2225.894) [-2210.255] -- 0:10:11
369000 -- (-2230.206) [-2213.179] (-2242.023) (-2206.962) * (-2226.633) [-2225.832] (-2234.119) (-2211.618) -- 0:10:10
370000 -- [-2214.587] (-2219.073) (-2240.037) (-2215.466) * (-2243.094) (-2226.933) [-2205.493] (-2224.296) -- 0:10:09
Average standard deviation of split frequencies: 0.007949
371000 -- (-2217.827) [-2214.655] (-2222.957) (-2218.306) * (-2233.947) [-2214.274] (-2228.185) (-2223.442) -- 0:10:08
372000 -- (-2242.949) [-2210.073] (-2239.112) (-2226.717) * (-2217.967) (-2231.017) (-2223.451) [-2216.134] -- 0:10:07
373000 -- (-2239.924) (-2213.570) [-2238.227] (-2213.507) * (-2229.130) (-2239.956) (-2217.469) [-2214.842] -- 0:10:06
374000 -- [-2214.095] (-2216.291) (-2230.088) (-2232.482) * (-2236.624) [-2227.923] (-2234.865) (-2227.772) -- 0:10:05
375000 -- (-2217.547) (-2226.082) [-2232.689] (-2244.783) * (-2227.433) [-2210.456] (-2226.962) (-2224.400) -- 0:10:05
Average standard deviation of split frequencies: 0.007757
376000 -- [-2225.113] (-2242.535) (-2243.129) (-2235.403) * (-2231.132) (-2207.760) [-2226.535] (-2231.068) -- 0:10:04
377000 -- (-2232.688) (-2224.068) [-2234.466] (-2222.877) * (-2214.562) [-2211.936] (-2225.716) (-2242.618) -- 0:10:03
378000 -- (-2221.264) (-2237.592) (-2236.494) [-2216.575] * (-2239.825) [-2217.678] (-2208.246) (-2237.064) -- 0:10:00
379000 -- (-2243.634) (-2225.345) [-2222.832] (-2222.711) * (-2234.853) (-2217.149) (-2230.095) [-2216.328] -- 0:09:59
380000 -- (-2224.715) (-2241.695) (-2240.953) [-2218.734] * (-2222.946) [-2204.020] (-2224.690) (-2226.652) -- 0:09:58
Average standard deviation of split frequencies: 0.007607
381000 -- [-2221.520] (-2213.695) (-2228.915) (-2229.978) * (-2233.465) (-2222.975) (-2227.463) [-2222.403] -- 0:09:57
382000 -- (-2237.729) [-2222.745] (-2246.698) (-2216.006) * [-2216.579] (-2228.050) (-2236.700) (-2224.171) -- 0:09:56
383000 -- [-2226.662] (-2226.681) (-2225.183) (-2227.062) * (-2231.548) (-2232.389) (-2229.303) [-2224.915] -- 0:09:56
384000 -- (-2252.624) [-2226.422] (-2232.110) (-2212.876) * (-2224.297) (-2224.297) (-2232.752) [-2219.518] -- 0:09:55
385000 -- (-2217.866) (-2230.136) [-2214.186] (-2232.160) * [-2211.778] (-2218.648) (-2235.870) (-2214.107) -- 0:09:54
Average standard deviation of split frequencies: 0.008192
386000 -- (-2227.610) [-2211.486] (-2204.289) (-2229.984) * [-2220.023] (-2220.339) (-2247.414) (-2222.946) -- 0:09:53
387000 -- [-2211.751] (-2234.190) (-2219.004) (-2243.289) * (-2217.882) (-2232.950) (-2238.016) [-2226.734] -- 0:09:52
388000 -- (-2233.052) [-2223.600] (-2216.807) (-2224.868) * (-2229.453) (-2228.040) [-2211.432] (-2221.553) -- 0:09:51
389000 -- (-2227.724) (-2221.843) (-2206.957) [-2220.288] * [-2216.865] (-2228.324) (-2238.680) (-2229.472) -- 0:09:50
390000 -- (-2228.405) (-2225.764) [-2235.005] (-2216.559) * (-2210.154) (-2234.568) (-2228.395) [-2212.627] -- 0:09:49
Average standard deviation of split frequencies: 0.007938
391000 -- [-2207.282] (-2220.522) (-2237.989) (-2226.089) * (-2218.072) [-2221.158] (-2232.947) (-2226.973) -- 0:09:48
392000 -- [-2212.797] (-2221.345) (-2224.957) (-2222.783) * (-2220.642) (-2226.614) (-2240.780) [-2218.803] -- 0:09:47
393000 -- (-2223.239) (-2247.471) (-2234.197) [-2220.929] * (-2217.039) (-2229.855) (-2242.992) [-2200.470] -- 0:09:46
394000 -- (-2227.739) (-2227.671) (-2235.135) [-2223.733] * [-2219.039] (-2222.386) (-2227.792) (-2217.788) -- 0:09:46
395000 -- [-2214.046] (-2259.069) (-2225.117) (-2227.343) * (-2232.239) (-2228.876) [-2216.500] (-2231.255) -- 0:09:45
Average standard deviation of split frequencies: 0.007728
396000 -- (-2225.785) (-2239.044) (-2205.474) [-2208.991] * [-2219.702] (-2222.785) (-2222.098) (-2255.755) -- 0:09:44
397000 -- (-2220.716) (-2248.851) [-2220.568] (-2226.259) * (-2214.500) [-2219.490] (-2219.086) (-2243.188) -- 0:09:43
398000 -- (-2230.381) (-2222.166) (-2230.230) [-2222.002] * (-2223.189) [-2221.753] (-2243.963) (-2232.675) -- 0:09:42
399000 -- (-2229.356) (-2215.580) (-2242.484) [-2215.067] * (-2227.307) (-2246.016) [-2199.803] (-2230.339) -- 0:09:41
400000 -- (-2236.778) [-2220.114] (-2219.914) (-2213.124) * [-2220.122] (-2241.182) (-2219.149) (-2230.623) -- 0:09:40
Average standard deviation of split frequencies: 0.007439
401000 -- (-2229.070) (-2218.903) (-2225.383) [-2210.982] * [-2226.517] (-2239.287) (-2231.595) (-2247.217) -- 0:09:39
402000 -- [-2220.662] (-2263.655) (-2216.474) (-2233.848) * (-2227.933) [-2238.138] (-2241.538) (-2231.447) -- 0:09:38
403000 -- (-2222.128) (-2229.695) [-2224.892] (-2231.248) * (-2240.620) (-2252.176) [-2216.281] (-2213.938) -- 0:09:36
404000 -- (-2218.575) (-2230.671) (-2223.920) [-2218.953] * [-2215.553] (-2230.353) (-2221.017) (-2226.268) -- 0:09:35
405000 -- (-2209.184) [-2222.511] (-2221.377) (-2228.124) * (-2215.554) (-2227.462) [-2230.422] (-2239.703) -- 0:09:34
Average standard deviation of split frequencies: 0.007169
406000 -- (-2247.783) (-2230.168) [-2229.041] (-2230.157) * [-2210.322] (-2240.487) (-2230.183) (-2218.359) -- 0:09:33
407000 -- (-2234.231) [-2225.606] (-2233.744) (-2222.281) * (-2227.190) [-2213.468] (-2232.332) (-2218.988) -- 0:09:32
408000 -- [-2210.154] (-2240.438) (-2239.335) (-2230.327) * (-2224.493) (-2229.267) [-2207.306] (-2210.018) -- 0:09:31
409000 -- (-2218.931) [-2222.276] (-2228.614) (-2232.966) * [-2211.698] (-2241.804) (-2228.517) (-2218.921) -- 0:09:30
410000 -- [-2212.156] (-2217.716) (-2232.728) (-2225.643) * [-2207.915] (-2238.947) (-2229.500) (-2208.280) -- 0:09:29
Average standard deviation of split frequencies: 0.007218
411000 -- [-2224.124] (-2212.099) (-2228.323) (-2220.016) * (-2220.584) (-2235.060) (-2228.220) [-2207.098] -- 0:09:28
412000 -- (-2219.379) (-2231.499) (-2229.546) [-2222.295] * (-2217.750) [-2210.008] (-2220.419) (-2228.288) -- 0:09:28
413000 -- (-2218.794) (-2245.991) (-2237.809) [-2208.490] * [-2216.668] (-2217.538) (-2237.717) (-2231.705) -- 0:09:27
414000 -- (-2234.051) (-2225.209) (-2234.323) [-2217.282] * [-2217.708] (-2226.070) (-2212.322) (-2227.793) -- 0:09:26
415000 -- (-2216.364) (-2214.962) (-2236.819) [-2217.410] * [-2231.507] (-2219.259) (-2209.922) (-2230.232) -- 0:09:25
Average standard deviation of split frequencies: 0.007338
416000 -- (-2222.798) [-2220.836] (-2227.226) (-2222.472) * (-2223.508) (-2219.464) (-2229.598) [-2200.754] -- 0:09:24
417000 -- (-2226.159) [-2217.908] (-2219.959) (-2223.526) * (-2220.515) (-2216.923) (-2220.646) [-2208.301] -- 0:09:23
418000 -- (-2231.690) [-2217.121] (-2232.772) (-2207.774) * [-2224.483] (-2241.289) (-2236.498) (-2215.488) -- 0:09:22
419000 -- (-2227.108) (-2218.186) [-2212.641] (-2230.920) * [-2206.449] (-2229.313) (-2245.914) (-2227.588) -- 0:09:21
420000 -- (-2245.366) [-2204.548] (-2217.354) (-2221.671) * (-2225.758) [-2207.483] (-2217.572) (-2229.451) -- 0:09:20
Average standard deviation of split frequencies: 0.006948
421000 -- [-2224.397] (-2213.810) (-2246.955) (-2222.551) * (-2246.869) (-2221.355) [-2207.283] (-2228.723) -- 0:09:19
422000 -- (-2231.590) (-2240.575) (-2250.295) [-2215.651] * (-2227.897) (-2231.272) (-2220.404) [-2218.012] -- 0:09:18
423000 -- [-2206.067] (-2237.522) (-2239.731) (-2222.252) * (-2221.841) (-2222.605) (-2224.322) [-2217.182] -- 0:09:17
424000 -- (-2205.609) (-2215.099) (-2232.776) [-2211.413] * (-2217.288) [-2209.613] (-2216.696) (-2224.815) -- 0:09:16
425000 -- [-2213.696] (-2219.701) (-2227.155) (-2227.655) * (-2222.120) [-2218.535] (-2217.739) (-2218.065) -- 0:09:16
Average standard deviation of split frequencies: 0.006833
426000 -- (-2206.245) (-2234.208) (-2242.115) [-2221.593] * (-2227.903) [-2218.373] (-2210.515) (-2222.759) -- 0:09:15
427000 -- [-2217.859] (-2231.343) (-2237.418) (-2217.862) * (-2237.058) (-2225.018) [-2218.494] (-2231.240) -- 0:09:14
428000 -- (-2245.027) (-2229.283) (-2214.309) [-2216.551] * (-2215.603) [-2211.180] (-2223.416) (-2239.618) -- 0:09:13
429000 -- (-2242.854) (-2223.860) (-2222.293) [-2209.784] * (-2231.707) [-2198.531] (-2244.819) (-2230.904) -- 0:09:12
430000 -- (-2238.837) [-2216.319] (-2227.656) (-2230.139) * (-2224.684) [-2209.103] (-2229.998) (-2235.205) -- 0:09:11
Average standard deviation of split frequencies: 0.007115
431000 -- (-2223.211) [-2203.084] (-2227.648) (-2228.179) * (-2231.725) (-2213.063) [-2212.896] (-2211.310) -- 0:09:10
432000 -- [-2232.439] (-2206.019) (-2238.968) (-2233.655) * (-2241.642) [-2219.960] (-2214.052) (-2211.415) -- 0:09:09
433000 -- (-2231.042) (-2239.058) [-2212.385] (-2221.712) * [-2225.766] (-2229.467) (-2212.769) (-2240.469) -- 0:09:08
434000 -- (-2220.618) (-2237.275) [-2206.230] (-2217.846) * (-2226.003) (-2230.290) [-2224.290] (-2229.138) -- 0:09:07
435000 -- (-2241.991) (-2217.127) [-2217.962] (-2226.937) * (-2247.615) (-2226.826) (-2220.419) [-2211.015] -- 0:09:06
Average standard deviation of split frequencies: 0.007499
436000 -- (-2248.160) (-2218.782) [-2214.747] (-2232.224) * (-2243.359) [-2207.669] (-2219.694) (-2226.883) -- 0:09:05
437000 -- (-2227.170) [-2216.943] (-2225.013) (-2226.160) * (-2240.068) (-2229.147) (-2226.974) [-2219.165] -- 0:09:04
438000 -- (-2233.397) (-2213.828) (-2232.489) [-2217.648] * (-2216.330) (-2223.006) [-2217.705] (-2233.471) -- 0:09:02
439000 -- (-2229.165) (-2214.847) (-2236.162) [-2221.699] * (-2235.919) (-2217.409) [-2219.381] (-2239.494) -- 0:09:01
440000 -- (-2229.273) (-2222.580) (-2226.152) [-2212.690] * (-2219.726) [-2204.700] (-2231.424) (-2213.624) -- 0:09:00
Average standard deviation of split frequencies: 0.007488
441000 -- (-2241.696) (-2227.176) (-2235.043) [-2214.760] * (-2230.615) (-2220.406) [-2219.010] (-2223.416) -- 0:08:59
442000 -- (-2224.448) (-2222.839) (-2255.287) [-2215.212] * (-2243.372) (-2220.104) [-2207.137] (-2218.311) -- 0:08:59
443000 -- [-2217.409] (-2233.263) (-2221.916) (-2232.565) * (-2226.934) (-2209.623) (-2251.613) [-2219.206] -- 0:08:58
444000 -- (-2209.492) (-2213.064) [-2218.815] (-2224.095) * (-2221.539) [-2205.689] (-2220.850) (-2241.680) -- 0:08:57
445000 -- (-2230.605) (-2214.662) (-2215.047) [-2223.572] * (-2217.441) (-2232.548) [-2226.516] (-2221.208) -- 0:08:56
Average standard deviation of split frequencies: 0.008358
446000 -- (-2208.513) [-2216.353] (-2224.636) (-2230.922) * (-2222.190) [-2212.161] (-2219.553) (-2231.127) -- 0:08:55
447000 -- (-2232.838) [-2222.042] (-2216.100) (-2219.279) * (-2236.080) (-2214.794) (-2221.713) [-2213.282] -- 0:08:54
448000 -- (-2241.040) [-2221.463] (-2231.267) (-2214.646) * (-2210.077) [-2215.098] (-2254.997) (-2212.148) -- 0:08:53
449000 -- (-2216.291) (-2220.283) (-2218.465) [-2218.855] * (-2214.496) (-2215.318) (-2223.340) [-2225.986] -- 0:08:52
450000 -- (-2224.566) (-2227.270) (-2224.384) [-2224.878] * (-2209.850) (-2225.861) (-2234.997) [-2222.522] -- 0:08:51
Average standard deviation of split frequencies: 0.008267
451000 -- (-2237.765) [-2219.560] (-2233.589) (-2220.461) * [-2219.213] (-2221.743) (-2230.576) (-2227.406) -- 0:08:50
452000 -- (-2237.967) [-2212.828] (-2235.453) (-2204.060) * (-2208.082) (-2228.192) (-2222.994) [-2206.607] -- 0:08:49
453000 -- (-2218.219) (-2220.727) [-2210.463] (-2233.454) * (-2218.173) (-2225.504) (-2237.423) [-2217.917] -- 0:08:48
454000 -- (-2220.091) [-2203.826] (-2211.734) (-2216.367) * [-2213.006] (-2215.659) (-2241.200) (-2208.452) -- 0:08:47
455000 -- (-2228.590) (-2214.789) (-2237.757) [-2223.453] * (-2223.013) [-2210.644] (-2234.488) (-2224.256) -- 0:08:47
Average standard deviation of split frequencies: 0.008580
456000 -- (-2220.446) [-2215.921] (-2220.773) (-2240.987) * (-2231.942) [-2212.272] (-2235.859) (-2227.110) -- 0:08:46
457000 -- (-2223.549) [-2222.423] (-2227.374) (-2212.752) * [-2212.549] (-2220.743) (-2247.501) (-2219.763) -- 0:08:45
458000 -- (-2231.637) (-2232.330) [-2212.635] (-2212.332) * [-2219.214] (-2211.949) (-2229.461) (-2224.455) -- 0:08:44
459000 -- [-2222.296] (-2237.450) (-2214.702) (-2231.448) * [-2213.942] (-2215.770) (-2250.581) (-2224.094) -- 0:08:43
460000 -- (-2212.521) (-2227.437) [-2209.606] (-2232.779) * (-2220.830) (-2226.009) (-2243.529) [-2209.950] -- 0:08:42
Average standard deviation of split frequencies: 0.008846
461000 -- [-2211.511] (-2242.522) (-2215.725) (-2244.901) * [-2207.436] (-2227.401) (-2222.487) (-2227.270) -- 0:08:41
462000 -- [-2207.830] (-2238.617) (-2204.003) (-2226.289) * (-2230.658) (-2228.508) (-2214.457) [-2222.552] -- 0:08:40
463000 -- (-2210.732) (-2230.371) (-2227.434) [-2220.300] * (-2239.400) [-2208.878] (-2218.882) (-2217.664) -- 0:08:39
464000 -- [-2217.337] (-2226.623) (-2212.885) (-2226.883) * (-2234.772) [-2203.152] (-2233.935) (-2223.128) -- 0:08:38
465000 -- (-2230.784) (-2213.294) (-2229.402) [-2210.918] * [-2214.312] (-2218.079) (-2231.718) (-2216.553) -- 0:08:37
Average standard deviation of split frequencies: 0.008872
466000 -- (-2232.571) (-2237.110) (-2234.648) [-2200.803] * (-2239.168) (-2215.911) (-2218.471) [-2207.555] -- 0:08:36
467000 -- (-2236.458) (-2222.124) (-2225.571) [-2211.974] * (-2238.083) [-2211.441] (-2232.467) (-2231.881) -- 0:08:35
468000 -- (-2227.524) (-2221.123) (-2215.599) [-2216.724] * [-2208.939] (-2227.062) (-2243.179) (-2241.083) -- 0:08:34
469000 -- (-2243.621) (-2229.026) (-2219.823) [-2210.600] * (-2229.134) [-2215.111] (-2217.285) (-2230.880) -- 0:08:32
470000 -- (-2254.620) (-2231.353) [-2206.028] (-2207.852) * (-2228.936) (-2231.286) [-2218.100] (-2240.326) -- 0:08:31
Average standard deviation of split frequencies: 0.009269
471000 -- [-2235.095] (-2236.039) (-2212.869) (-2222.931) * (-2232.144) [-2221.721] (-2222.628) (-2219.032) -- 0:08:31
472000 -- (-2233.353) [-2224.795] (-2210.088) (-2209.497) * (-2234.172) (-2226.416) [-2210.451] (-2214.349) -- 0:08:30
473000 -- (-2226.305) (-2235.452) (-2223.882) [-2219.156] * [-2230.707] (-2246.674) (-2232.247) (-2227.396) -- 0:08:29
474000 -- [-2223.948] (-2233.685) (-2249.142) (-2217.357) * (-2234.275) (-2226.608) (-2223.451) [-2217.561] -- 0:08:28
475000 -- (-2218.063) (-2227.861) [-2231.592] (-2245.670) * (-2220.733) (-2231.829) (-2239.512) [-2211.094] -- 0:08:27
Average standard deviation of split frequencies: 0.009306
476000 -- [-2216.633] (-2226.902) (-2248.833) (-2227.017) * (-2239.593) [-2210.280] (-2233.674) (-2222.083) -- 0:08:26
477000 -- (-2221.967) (-2245.428) (-2236.122) [-2237.652] * (-2233.182) [-2219.277] (-2252.617) (-2221.463) -- 0:08:25
478000 -- (-2234.356) (-2237.094) [-2208.805] (-2229.039) * (-2221.218) (-2227.473) (-2235.019) [-2224.987] -- 0:08:24
479000 -- (-2224.436) (-2228.494) [-2224.402] (-2236.141) * (-2221.320) (-2233.946) (-2231.368) [-2220.717] -- 0:08:23
480000 -- (-2228.333) [-2225.430] (-2221.915) (-2245.220) * (-2228.256) (-2212.606) [-2227.587] (-2217.749) -- 0:08:22
Average standard deviation of split frequencies: 0.009681
481000 -- (-2213.915) (-2218.192) [-2212.270] (-2228.397) * (-2249.279) [-2216.773] (-2234.285) (-2218.787) -- 0:08:21
482000 -- (-2217.496) (-2215.603) [-2211.023] (-2239.763) * (-2227.369) (-2227.472) (-2234.999) [-2212.315] -- 0:08:20
483000 -- (-2236.566) [-2217.980] (-2222.951) (-2228.878) * (-2221.742) [-2217.716] (-2212.927) (-2226.726) -- 0:08:19
484000 -- (-2226.022) (-2223.484) [-2206.062] (-2227.756) * (-2239.722) (-2221.656) (-2212.808) [-2219.553] -- 0:08:18
485000 -- [-2214.083] (-2233.185) (-2214.063) (-2229.229) * (-2232.857) [-2202.534] (-2224.185) (-2233.190) -- 0:08:18
Average standard deviation of split frequencies: 0.009387
486000 -- (-2241.326) [-2221.411] (-2242.320) (-2213.939) * (-2238.766) (-2230.060) (-2221.402) [-2218.281] -- 0:08:17
487000 -- (-2226.678) (-2243.895) [-2215.355] (-2222.588) * (-2241.486) (-2243.827) [-2210.388] (-2208.749) -- 0:08:16
488000 -- (-2219.865) (-2236.651) [-2206.834] (-2218.422) * (-2229.155) [-2229.897] (-2229.062) (-2215.035) -- 0:08:15
489000 -- (-2237.496) (-2225.144) (-2216.229) [-2212.462] * (-2226.610) [-2212.890] (-2222.913) (-2216.928) -- 0:08:14
490000 -- (-2234.415) [-2223.702] (-2223.585) (-2215.462) * (-2235.600) (-2213.165) (-2212.336) [-2214.720] -- 0:08:13
Average standard deviation of split frequencies: 0.009497
491000 -- (-2204.860) (-2236.118) (-2220.940) [-2208.757] * (-2215.282) (-2236.859) [-2212.708] (-2248.533) -- 0:08:12
492000 -- [-2229.461] (-2235.669) (-2211.507) (-2213.515) * [-2219.784] (-2233.324) (-2225.712) (-2230.404) -- 0:08:10
493000 -- (-2220.312) (-2213.639) (-2217.602) [-2214.263] * (-2224.619) [-2217.833] (-2236.808) (-2224.730) -- 0:08:09
494000 -- (-2226.317) [-2221.076] (-2223.755) (-2221.178) * (-2225.054) [-2213.142] (-2239.852) (-2237.604) -- 0:08:08
495000 -- [-2215.466] (-2215.698) (-2213.063) (-2211.796) * (-2232.993) (-2222.620) (-2231.337) [-2247.610] -- 0:08:07
Average standard deviation of split frequencies: 0.009407
496000 -- [-2233.764] (-2219.843) (-2228.058) (-2229.618) * (-2250.313) [-2207.330] (-2224.218) (-2226.169) -- 0:08:06
497000 -- (-2227.226) (-2232.896) [-2220.395] (-2223.244) * [-2222.717] (-2216.106) (-2224.879) (-2245.783) -- 0:08:05
498000 -- [-2222.898] (-2235.790) (-2238.672) (-2219.302) * [-2222.710] (-2222.786) (-2215.921) (-2235.556) -- 0:08:04
499000 -- (-2233.614) [-2210.540] (-2257.633) (-2217.858) * (-2227.183) (-2229.687) [-2233.868] (-2237.460) -- 0:08:03
500000 -- [-2219.250] (-2216.178) (-2249.433) (-2213.822) * (-2233.995) (-2226.409) [-2215.101] (-2241.461) -- 0:08:03
Average standard deviation of split frequencies: 0.009692
501000 -- (-2236.379) (-2227.206) (-2248.970) [-2207.838] * (-2223.060) (-2224.284) [-2236.094] (-2222.290) -- 0:08:02
502000 -- [-2219.106] (-2221.602) (-2239.724) (-2222.761) * (-2249.201) (-2228.712) [-2213.301] (-2228.421) -- 0:08:01
503000 -- (-2215.024) (-2240.507) [-2213.148] (-2235.676) * (-2235.366) (-2219.623) [-2224.477] (-2229.700) -- 0:08:00
504000 -- (-2219.937) [-2213.323] (-2229.518) (-2230.031) * (-2231.369) (-2224.974) [-2221.840] (-2218.311) -- 0:07:59
505000 -- [-2204.912] (-2226.147) (-2228.264) (-2231.226) * [-2224.148] (-2230.070) (-2219.834) (-2235.403) -- 0:07:58
Average standard deviation of split frequencies: 0.009707
506000 -- [-2220.968] (-2236.114) (-2240.914) (-2232.342) * [-2218.866] (-2211.297) (-2235.264) (-2227.061) -- 0:07:57
507000 -- (-2229.405) (-2221.983) [-2212.666] (-2229.659) * (-2222.454) (-2232.786) [-2221.990] (-2209.305) -- 0:07:56
508000 -- (-2222.298) (-2216.058) (-2218.938) [-2227.687] * (-2225.671) (-2213.674) (-2242.907) [-2223.584] -- 0:07:55
509000 -- (-2222.752) (-2224.512) (-2230.032) [-2219.007] * (-2218.675) (-2218.941) [-2220.374] (-2234.635) -- 0:07:54
510000 -- [-2212.432] (-2228.888) (-2232.060) (-2207.151) * [-2218.285] (-2222.192) (-2225.361) (-2226.163) -- 0:07:53
Average standard deviation of split frequencies: 0.010107
511000 -- (-2223.458) [-2202.990] (-2221.620) (-2225.766) * (-2228.372) (-2234.752) (-2232.885) [-2206.016] -- 0:07:52
512000 -- (-2227.077) [-2210.250] (-2222.167) (-2227.927) * (-2236.458) [-2199.150] (-2224.925) (-2222.486) -- 0:07:51
513000 -- (-2233.566) (-2218.790) [-2211.922] (-2215.826) * (-2226.089) (-2228.019) [-2209.238] (-2214.178) -- 0:07:50
514000 -- (-2223.451) (-2216.829) (-2220.706) [-2222.545] * [-2197.796] (-2244.706) (-2213.903) (-2215.941) -- 0:07:49
515000 -- [-2218.482] (-2224.211) (-2223.357) (-2215.762) * (-2214.702) (-2254.233) (-2217.770) [-2224.882] -- 0:07:48
Average standard deviation of split frequencies: 0.010144
516000 -- (-2222.867) (-2226.153) [-2203.496] (-2213.789) * (-2205.833) (-2220.504) [-2216.109] (-2219.100) -- 0:07:48
517000 -- (-2240.164) (-2242.018) (-2224.452) [-2229.252] * [-2226.756] (-2229.680) (-2225.739) (-2235.317) -- 0:07:47
518000 -- (-2215.468) (-2222.434) [-2214.419] (-2231.430) * (-2220.989) (-2217.035) [-2211.137] (-2232.077) -- 0:07:46
519000 -- (-2230.196) (-2220.044) [-2203.165] (-2230.131) * (-2223.398) (-2230.189) [-2217.961] (-2225.343) -- 0:07:45
520000 -- (-2214.828) (-2220.686) [-2216.442] (-2231.151) * (-2227.980) (-2248.883) (-2220.646) [-2217.763] -- 0:07:44
Average standard deviation of split frequencies: 0.009785
521000 -- (-2215.056) [-2222.173] (-2226.538) (-2223.158) * (-2231.349) (-2240.262) (-2212.992) [-2204.985] -- 0:07:43
522000 -- (-2208.041) (-2240.529) (-2225.195) [-2224.677] * (-2242.000) (-2233.034) (-2226.121) [-2222.888] -- 0:07:42
523000 -- (-2216.648) [-2206.483] (-2211.047) (-2236.397) * (-2246.321) [-2215.341] (-2222.953) (-2231.085) -- 0:07:41
524000 -- (-2225.163) (-2227.828) (-2227.752) [-2225.112] * (-2236.305) (-2226.911) [-2212.185] (-2219.082) -- 0:07:40
525000 -- (-2227.846) (-2221.885) [-2208.871] (-2214.275) * (-2227.825) (-2245.044) [-2200.679] (-2227.029) -- 0:07:39
Average standard deviation of split frequencies: 0.009767
526000 -- (-2226.234) [-2214.545] (-2222.034) (-2220.610) * (-2227.157) (-2235.478) [-2221.073] (-2216.838) -- 0:07:38
527000 -- (-2224.747) [-2233.352] (-2223.082) (-2203.971) * [-2229.762] (-2239.530) (-2230.528) (-2236.734) -- 0:07:37
528000 -- (-2226.158) (-2219.538) [-2217.051] (-2208.489) * (-2219.251) (-2240.641) [-2222.127] (-2232.450) -- 0:07:36
529000 -- (-2241.939) (-2214.774) (-2226.324) [-2217.662] * (-2244.001) (-2222.892) [-2226.468] (-2218.685) -- 0:07:35
530000 -- [-2212.538] (-2221.453) (-2234.134) (-2221.026) * (-2220.878) (-2241.891) (-2240.169) [-2206.957] -- 0:07:34
Average standard deviation of split frequencies: 0.009579
531000 -- (-2220.037) [-2207.120] (-2220.741) (-2232.307) * [-2203.583] (-2254.163) (-2213.253) (-2203.900) -- 0:07:33
532000 -- (-2222.603) (-2231.824) (-2222.983) [-2219.350] * (-2221.562) (-2227.510) (-2231.122) [-2201.939] -- 0:07:33
533000 -- [-2218.976] (-2213.332) (-2231.301) (-2220.102) * [-2222.178] (-2235.755) (-2217.329) (-2207.843) -- 0:07:32
534000 -- (-2209.728) [-2219.916] (-2230.237) (-2227.243) * (-2236.566) (-2243.446) (-2215.515) [-2207.490] -- 0:07:31
535000 -- (-2217.550) (-2231.006) [-2222.433] (-2225.610) * (-2221.729) (-2224.420) [-2213.540] (-2222.765) -- 0:07:30
Average standard deviation of split frequencies: 0.009484
536000 -- (-2211.064) (-2228.312) [-2209.595] (-2227.802) * [-2211.182] (-2233.940) (-2224.571) (-2231.111) -- 0:07:29
537000 -- (-2209.084) [-2221.970] (-2218.630) (-2231.048) * (-2228.261) [-2224.269] (-2221.911) (-2224.306) -- 0:07:27
538000 -- (-2236.001) (-2213.176) (-2230.337) [-2230.329] * [-2206.241] (-2249.753) (-2230.626) (-2223.609) -- 0:07:26
539000 -- (-2215.559) (-2237.982) [-2213.197] (-2229.049) * [-2213.003] (-2228.829) (-2225.031) (-2222.062) -- 0:07:25
540000 -- [-2224.607] (-2218.345) (-2209.967) (-2234.963) * (-2229.133) (-2208.141) [-2211.487] (-2219.382) -- 0:07:24
Average standard deviation of split frequencies: 0.009162
541000 -- (-2225.831) (-2217.565) (-2225.362) [-2210.978] * (-2225.837) [-2214.099] (-2212.188) (-2237.202) -- 0:07:23
542000 -- (-2235.734) [-2216.070] (-2230.072) (-2221.337) * (-2235.709) (-2212.506) (-2232.652) [-2207.783] -- 0:07:22
543000 -- (-2224.199) [-2199.111] (-2235.697) (-2220.464) * (-2239.655) [-2209.534] (-2240.003) (-2221.668) -- 0:07:21
544000 -- (-2229.259) (-2218.811) (-2227.418) [-2217.040] * (-2228.260) (-2213.427) [-2219.931] (-2222.805) -- 0:07:20
545000 -- (-2230.800) (-2223.500) [-2221.913] (-2210.615) * (-2218.048) [-2219.088] (-2234.742) (-2217.177) -- 0:07:19
Average standard deviation of split frequencies: 0.009278
546000 -- (-2234.792) (-2222.323) (-2222.892) [-2229.487] * [-2222.310] (-2227.664) (-2238.789) (-2251.745) -- 0:07:19
547000 -- (-2238.679) (-2233.487) [-2215.320] (-2234.051) * (-2214.997) [-2220.133] (-2220.968) (-2238.092) -- 0:07:18
548000 -- (-2239.393) [-2231.051] (-2209.982) (-2232.065) * [-2218.023] (-2219.296) (-2219.414) (-2220.568) -- 0:07:17
549000 -- [-2217.956] (-2213.025) (-2225.705) (-2234.956) * (-2223.102) (-2222.773) [-2208.428] (-2261.394) -- 0:07:16
550000 -- (-2241.075) (-2218.910) (-2230.657) [-2212.879] * [-2224.520] (-2217.579) (-2224.507) (-2247.931) -- 0:07:15
Average standard deviation of split frequencies: 0.009145
551000 -- (-2224.416) (-2240.089) (-2218.060) [-2211.066] * (-2215.065) (-2230.502) [-2208.905] (-2242.696) -- 0:07:14
552000 -- (-2239.295) [-2210.384] (-2240.752) (-2217.896) * (-2230.235) (-2226.568) [-2212.491] (-2237.327) -- 0:07:13
553000 -- (-2227.224) [-2208.425] (-2245.229) (-2229.777) * [-2218.534] (-2237.283) (-2218.844) (-2230.195) -- 0:07:12
554000 -- (-2225.387) (-2222.370) (-2227.564) [-2216.668] * (-2249.761) (-2238.921) (-2225.580) [-2219.887] -- 0:07:11
555000 -- [-2206.243] (-2234.209) (-2220.320) (-2215.687) * (-2227.577) (-2220.106) (-2212.814) [-2214.702] -- 0:07:10
Average standard deviation of split frequencies: 0.009367
556000 -- (-2218.579) (-2230.447) (-2229.181) [-2205.412] * [-2215.009] (-2221.139) (-2231.558) (-2238.010) -- 0:07:09
557000 -- [-2226.564] (-2234.950) (-2221.612) (-2224.286) * (-2217.042) [-2211.688] (-2221.780) (-2233.381) -- 0:07:08
558000 -- [-2215.671] (-2238.496) (-2216.994) (-2224.090) * [-2210.114] (-2215.168) (-2215.861) (-2235.103) -- 0:07:07
559000 -- (-2234.046) (-2240.591) (-2223.882) [-2209.496] * (-2207.523) [-2214.738] (-2217.840) (-2228.332) -- 0:07:06
560000 -- (-2232.518) (-2227.748) (-2215.652) [-2212.356] * (-2225.294) (-2228.932) (-2212.911) [-2222.042] -- 0:07:05
Average standard deviation of split frequencies: 0.009220
561000 -- (-2228.466) (-2228.762) (-2215.738) [-2213.595] * [-2218.281] (-2228.309) (-2224.043) (-2226.287) -- 0:07:04
562000 -- [-2214.239] (-2224.181) (-2211.326) (-2222.937) * (-2225.502) [-2217.666] (-2214.756) (-2236.449) -- 0:07:03
563000 -- [-2224.709] (-2221.126) (-2222.834) (-2214.371) * (-2228.776) [-2218.647] (-2211.423) (-2234.227) -- 0:07:02
564000 -- [-2210.001] (-2226.516) (-2248.188) (-2226.520) * [-2223.608] (-2216.121) (-2235.457) (-2235.801) -- 0:07:01
565000 -- [-2222.546] (-2237.574) (-2252.342) (-2213.575) * (-2236.410) [-2217.935] (-2226.855) (-2224.033) -- 0:07:00
Average standard deviation of split frequencies: 0.009627
566000 -- [-2224.445] (-2222.097) (-2229.161) (-2229.314) * [-2214.199] (-2215.704) (-2233.737) (-2232.378) -- 0:06:59
567000 -- (-2220.839) [-2229.017] (-2217.795) (-2225.268) * (-2217.788) [-2215.256] (-2224.465) (-2239.203) -- 0:06:58
568000 -- [-2228.020] (-2242.348) (-2236.033) (-2228.887) * (-2228.270) (-2223.909) (-2233.028) [-2228.954] -- 0:06:57
569000 -- (-2219.945) (-2216.509) [-2222.128] (-2229.766) * [-2220.268] (-2248.126) (-2230.487) (-2222.000) -- 0:06:56
570000 -- (-2227.466) [-2211.566] (-2247.077) (-2237.353) * [-2227.428] (-2250.845) (-2248.179) (-2211.635) -- 0:06:55
Average standard deviation of split frequencies: 0.009471
571000 -- (-2215.599) [-2218.470] (-2231.573) (-2224.515) * (-2221.464) (-2222.342) (-2238.935) [-2210.020] -- 0:06:54
572000 -- (-2220.416) (-2233.093) [-2210.564] (-2215.207) * (-2222.846) (-2231.456) (-2249.862) [-2203.396] -- 0:06:53
573000 -- (-2221.857) (-2250.263) [-2223.772] (-2233.033) * [-2222.599] (-2216.994) (-2239.083) (-2227.610) -- 0:06:52
574000 -- (-2211.716) (-2215.047) [-2207.543] (-2242.105) * (-2215.301) [-2222.455] (-2232.634) (-2214.525) -- 0:06:51
575000 -- (-2233.468) [-2215.939] (-2218.697) (-2215.686) * (-2223.982) (-2207.461) [-2208.995] (-2217.295) -- 0:06:50
Average standard deviation of split frequencies: 0.009271
576000 -- (-2217.013) [-2214.973] (-2245.463) (-2214.010) * (-2218.595) (-2225.310) [-2218.813] (-2221.737) -- 0:06:50
577000 -- (-2229.986) [-2207.487] (-2238.349) (-2217.845) * (-2232.269) [-2223.314] (-2220.517) (-2225.858) -- 0:06:49
578000 -- (-2238.022) (-2225.923) (-2240.709) [-2209.964] * (-2213.424) (-2224.868) (-2212.054) [-2212.257] -- 0:06:48
579000 -- (-2245.382) (-2217.516) [-2221.314] (-2216.528) * (-2214.548) (-2233.289) (-2226.825) [-2206.646] -- 0:06:47
580000 -- [-2229.137] (-2217.163) (-2237.445) (-2219.940) * (-2214.623) (-2214.521) (-2219.021) [-2196.972] -- 0:06:46
Average standard deviation of split frequencies: 0.009137
581000 -- (-2226.305) (-2229.770) (-2239.186) [-2209.698] * (-2226.933) (-2234.469) [-2211.252] (-2221.280) -- 0:06:45
582000 -- (-2231.377) (-2207.891) (-2238.419) [-2218.140] * (-2233.105) (-2238.074) [-2229.497] (-2217.907) -- 0:06:44
583000 -- [-2214.878] (-2225.446) (-2217.691) (-2223.634) * (-2243.200) [-2219.390] (-2228.602) (-2226.482) -- 0:06:43
584000 -- (-2229.435) (-2230.414) [-2228.262] (-2217.389) * [-2212.524] (-2239.392) (-2228.410) (-2217.500) -- 0:06:42
585000 -- (-2231.506) (-2233.445) [-2235.866] (-2220.726) * [-2212.716] (-2223.603) (-2231.737) (-2241.244) -- 0:06:41
Average standard deviation of split frequencies: 0.009010
586000 -- [-2220.001] (-2215.549) (-2238.481) (-2236.567) * [-2227.266] (-2227.734) (-2226.466) (-2226.202) -- 0:06:40
587000 -- (-2208.694) (-2238.102) (-2218.950) [-2210.098] * [-2217.092] (-2242.790) (-2220.519) (-2222.064) -- 0:06:39
588000 -- [-2207.202] (-2237.930) (-2220.139) (-2221.227) * (-2217.971) (-2232.308) [-2207.616] (-2212.414) -- 0:06:38
589000 -- (-2216.469) [-2205.869] (-2222.442) (-2242.982) * (-2215.410) [-2209.113] (-2216.328) (-2227.553) -- 0:06:37
590000 -- (-2213.730) [-2209.715] (-2214.241) (-2233.060) * (-2214.808) (-2230.727) (-2214.963) [-2234.687] -- 0:06:36
Average standard deviation of split frequencies: 0.009512
591000 -- (-2219.409) (-2221.133) [-2217.235] (-2244.504) * (-2219.162) [-2214.722] (-2216.474) (-2231.571) -- 0:06:35
592000 -- [-2221.337] (-2228.212) (-2234.769) (-2224.002) * [-2221.607] (-2233.289) (-2225.300) (-2233.067) -- 0:06:34
593000 -- [-2217.456] (-2242.398) (-2247.690) (-2232.386) * [-2208.496] (-2225.993) (-2213.656) (-2240.561) -- 0:06:33
594000 -- (-2213.042) (-2245.251) (-2227.136) [-2220.159] * (-2226.489) (-2223.024) (-2239.930) [-2213.795] -- 0:06:32
595000 -- [-2224.068] (-2229.903) (-2220.293) (-2217.774) * (-2230.607) [-2204.956] (-2224.263) (-2229.628) -- 0:06:31
Average standard deviation of split frequencies: 0.009947
596000 -- (-2220.763) (-2250.296) (-2231.533) [-2221.420] * (-2235.519) (-2221.472) (-2230.314) [-2226.850] -- 0:06:30
597000 -- [-2214.263] (-2238.534) (-2221.410) (-2236.910) * (-2224.763) (-2226.868) (-2227.579) [-2215.631] -- 0:06:29
598000 -- [-2206.588] (-2231.675) (-2220.933) (-2233.746) * (-2212.333) (-2226.667) (-2230.473) [-2212.906] -- 0:06:28
599000 -- [-2213.092] (-2220.571) (-2229.647) (-2237.687) * (-2210.236) [-2210.743] (-2232.857) (-2223.954) -- 0:06:27
600000 -- (-2231.736) (-2220.571) [-2221.829] (-2228.323) * (-2213.016) (-2216.939) [-2216.148] (-2232.233) -- 0:06:26
Average standard deviation of split frequencies: 0.010137
601000 -- (-2230.093) (-2218.885) (-2216.251) [-2213.872] * (-2233.590) [-2226.502] (-2228.286) (-2235.510) -- 0:06:25
602000 -- (-2202.760) [-2220.467] (-2216.551) (-2222.456) * (-2210.589) [-2227.632] (-2220.459) (-2243.234) -- 0:06:24
603000 -- [-2212.079] (-2215.970) (-2236.564) (-2226.709) * (-2212.757) (-2240.497) (-2211.534) [-2213.987] -- 0:06:23
604000 -- [-2209.937] (-2231.496) (-2227.301) (-2239.399) * (-2220.244) (-2226.162) [-2221.586] (-2231.990) -- 0:06:22
605000 -- (-2211.697) (-2215.316) (-2224.002) [-2216.710] * [-2216.161] (-2253.446) (-2216.863) (-2222.333) -- 0:06:21
Average standard deviation of split frequencies: 0.010355
606000 -- (-2209.298) (-2234.930) [-2217.514] (-2220.243) * (-2228.315) (-2225.805) [-2223.979] (-2228.216) -- 0:06:20
607000 -- (-2226.926) [-2208.780] (-2214.988) (-2244.882) * (-2234.515) [-2208.494] (-2221.591) (-2231.002) -- 0:06:20
608000 -- (-2232.030) [-2211.630] (-2220.508) (-2222.498) * (-2227.637) [-2211.422] (-2222.156) (-2238.155) -- 0:06:19
609000 -- (-2210.853) (-2207.170) [-2216.011] (-2226.754) * [-2216.220] (-2216.116) (-2207.657) (-2234.421) -- 0:06:18
610000 -- [-2221.748] (-2222.342) (-2224.613) (-2208.870) * [-2212.016] (-2221.917) (-2220.065) (-2225.247) -- 0:06:17
Average standard deviation of split frequencies: 0.010383
611000 -- (-2229.818) (-2220.452) (-2235.702) [-2215.195] * [-2229.789] (-2221.801) (-2225.896) (-2246.598) -- 0:06:16
612000 -- (-2221.680) (-2214.690) (-2240.890) [-2222.814] * (-2238.597) (-2204.637) [-2218.496] (-2243.689) -- 0:06:15
613000 -- (-2233.025) [-2221.972] (-2218.535) (-2235.827) * (-2216.504) (-2228.554) [-2207.198] (-2220.957) -- 0:06:14
614000 -- (-2235.489) (-2225.691) [-2212.147] (-2216.152) * (-2233.742) (-2218.044) (-2223.576) [-2212.324] -- 0:06:13
615000 -- (-2227.929) (-2210.816) (-2241.219) [-2223.127] * (-2226.956) (-2241.500) [-2208.138] (-2201.318) -- 0:06:12
Average standard deviation of split frequencies: 0.010086
616000 -- (-2217.378) (-2220.537) (-2255.678) [-2213.535] * (-2226.751) (-2226.642) (-2219.041) [-2216.555] -- 0:06:11
617000 -- (-2244.254) (-2219.732) [-2216.856] (-2235.336) * (-2229.199) (-2235.458) (-2235.855) [-2218.746] -- 0:06:10
618000 -- [-2214.141] (-2211.971) (-2235.467) (-2247.359) * (-2244.377) [-2207.119] (-2211.627) (-2224.942) -- 0:06:09
619000 -- (-2218.558) [-2216.934] (-2231.230) (-2238.125) * (-2212.923) (-2211.096) [-2227.751] (-2241.319) -- 0:06:08
620000 -- (-2236.986) (-2239.893) (-2225.309) [-2234.991] * (-2213.906) [-2224.732] (-2211.338) (-2244.993) -- 0:06:07
Average standard deviation of split frequencies: 0.010466
621000 -- (-2228.305) [-2219.790] (-2220.187) (-2242.799) * (-2240.230) [-2216.060] (-2215.596) (-2238.439) -- 0:06:06
622000 -- (-2217.938) (-2242.448) [-2213.294] (-2242.711) * (-2236.622) (-2220.141) [-2220.105] (-2227.949) -- 0:06:05
623000 -- [-2227.866] (-2229.308) (-2215.015) (-2230.794) * (-2226.605) [-2239.279] (-2235.422) (-2229.499) -- 0:06:04
624000 -- (-2237.465) (-2235.158) [-2227.905] (-2223.321) * [-2223.810] (-2223.355) (-2219.960) (-2232.367) -- 0:06:03
625000 -- (-2225.745) (-2221.855) (-2253.121) [-2210.689] * (-2209.025) [-2243.498] (-2223.639) (-2237.358) -- 0:06:03
Average standard deviation of split frequencies: 0.010222
626000 -- (-2220.026) [-2215.113] (-2237.270) (-2230.853) * (-2225.274) (-2236.243) (-2220.471) [-2215.533] -- 0:06:01
627000 -- [-2222.183] (-2214.580) (-2232.659) (-2244.027) * [-2225.779] (-2224.190) (-2227.210) (-2231.643) -- 0:06:00
628000 -- (-2236.158) (-2225.263) [-2232.576] (-2233.078) * (-2230.159) (-2221.353) (-2235.626) [-2219.579] -- 0:05:59
629000 -- (-2219.269) [-2216.817] (-2228.684) (-2239.922) * [-2218.833] (-2235.013) (-2219.594) (-2221.514) -- 0:05:58
630000 -- [-2224.483] (-2208.604) (-2219.796) (-2232.807) * [-2224.232] (-2235.716) (-2211.854) (-2219.930) -- 0:05:57
Average standard deviation of split frequencies: 0.009812
631000 -- (-2240.549) [-2211.422] (-2234.214) (-2243.626) * [-2223.041] (-2233.602) (-2252.836) (-2231.686) -- 0:05:56
632000 -- (-2218.786) (-2219.869) [-2216.615] (-2237.678) * (-2232.589) [-2208.937] (-2237.048) (-2210.999) -- 0:05:55
633000 -- (-2230.358) (-2239.425) (-2241.953) [-2212.154] * (-2235.964) [-2225.915] (-2240.030) (-2227.438) -- 0:05:54
634000 -- (-2259.577) [-2209.601] (-2217.893) (-2209.351) * (-2228.000) (-2216.570) (-2217.370) [-2219.538] -- 0:05:53
635000 -- (-2232.247) [-2219.189] (-2224.853) (-2231.140) * (-2223.263) (-2221.577) (-2218.734) [-2210.648] -- 0:05:52
Average standard deviation of split frequencies: 0.009492
636000 -- [-2212.977] (-2226.533) (-2224.358) (-2219.109) * (-2231.136) (-2233.565) [-2215.852] (-2217.635) -- 0:05:51
637000 -- (-2219.293) [-2210.644] (-2227.303) (-2221.854) * (-2248.125) (-2230.782) (-2207.533) [-2216.652] -- 0:05:51
638000 -- (-2218.252) [-2208.387] (-2227.183) (-2212.033) * (-2217.017) [-2206.751] (-2234.373) (-2216.640) -- 0:05:50
639000 -- (-2228.833) [-2211.327] (-2223.048) (-2210.838) * (-2223.151) [-2210.199] (-2222.091) (-2211.752) -- 0:05:49
640000 -- (-2223.641) (-2218.064) (-2228.233) [-2220.679] * [-2218.680] (-2210.274) (-2224.260) (-2227.293) -- 0:05:48
Average standard deviation of split frequencies: 0.009172
641000 -- [-2220.373] (-2235.966) (-2228.288) (-2213.684) * (-2227.820) (-2226.987) (-2229.315) [-2207.948] -- 0:05:47
642000 -- (-2225.066) (-2259.439) (-2222.201) [-2213.819] * (-2207.439) (-2214.270) [-2209.922] (-2246.578) -- 0:05:46
643000 -- (-2225.864) (-2243.376) [-2222.767] (-2217.396) * [-2226.641] (-2231.415) (-2226.715) (-2236.984) -- 0:05:45
644000 -- (-2206.586) [-2219.059] (-2233.258) (-2235.177) * (-2243.115) [-2224.917] (-2229.893) (-2230.661) -- 0:05:44
645000 -- (-2232.827) (-2224.275) [-2217.043] (-2220.588) * [-2226.970] (-2246.747) (-2226.550) (-2241.058) -- 0:05:43
Average standard deviation of split frequencies: 0.009285
646000 -- (-2258.161) (-2227.294) (-2218.994) [-2222.605] * (-2220.446) (-2219.616) (-2236.112) [-2229.701] -- 0:05:42
647000 -- (-2229.461) (-2218.035) [-2217.382] (-2213.007) * (-2247.777) (-2225.750) (-2225.413) [-2229.405] -- 0:05:41
648000 -- (-2232.244) [-2207.669] (-2219.784) (-2211.966) * (-2233.661) (-2222.094) [-2222.616] (-2219.833) -- 0:05:40
649000 -- (-2217.669) [-2210.163] (-2236.563) (-2217.714) * (-2224.512) (-2234.500) [-2212.177] (-2234.559) -- 0:05:39
650000 -- (-2209.435) [-2209.787] (-2237.271) (-2213.291) * (-2233.468) (-2237.186) [-2216.235] (-2224.313) -- 0:05:38
Average standard deviation of split frequencies: 0.008878
651000 -- (-2254.391) (-2219.068) [-2214.083] (-2231.648) * (-2231.511) [-2228.366] (-2218.046) (-2221.674) -- 0:05:37
652000 -- [-2240.035] (-2211.870) (-2228.845) (-2223.051) * (-2216.802) (-2240.510) (-2226.988) [-2222.588] -- 0:05:36
653000 -- (-2221.909) [-2205.339] (-2212.085) (-2239.760) * [-2224.190] (-2234.110) (-2235.615) (-2241.888) -- 0:05:35
654000 -- (-2226.390) (-2209.201) [-2218.402] (-2244.113) * (-2241.095) (-2235.059) (-2228.987) [-2230.805] -- 0:05:34
655000 -- [-2207.672] (-2216.489) (-2215.636) (-2246.469) * (-2220.017) [-2220.149] (-2223.314) (-2223.002) -- 0:05:33
Average standard deviation of split frequencies: 0.009404
656000 -- [-2211.221] (-2215.645) (-2221.508) (-2228.170) * (-2249.768) [-2206.127] (-2218.739) (-2221.534) -- 0:05:32
657000 -- (-2225.079) [-2206.729] (-2235.721) (-2231.209) * (-2249.966) [-2207.516] (-2228.239) (-2226.983) -- 0:05:31
658000 -- [-2220.329] (-2208.662) (-2235.550) (-2225.577) * (-2241.467) (-2228.919) [-2228.772] (-2233.450) -- 0:05:30
659000 -- (-2215.405) [-2219.215] (-2238.587) (-2236.828) * [-2220.478] (-2220.038) (-2238.016) (-2257.209) -- 0:05:29
660000 -- [-2217.664] (-2232.865) (-2232.432) (-2226.917) * [-2227.152] (-2223.390) (-2226.868) (-2248.116) -- 0:05:28
Average standard deviation of split frequencies: 0.009531
661000 -- [-2229.902] (-2236.363) (-2240.943) (-2227.444) * (-2212.273) (-2223.312) [-2216.460] (-2249.788) -- 0:05:27
662000 -- (-2232.213) (-2229.478) (-2249.063) [-2205.063] * (-2221.764) (-2226.937) [-2215.277] (-2230.377) -- 0:05:26
663000 -- (-2219.559) (-2234.440) [-2212.022] (-2210.591) * (-2247.409) (-2243.054) [-2206.419] (-2210.577) -- 0:05:25
664000 -- (-2224.051) (-2224.977) [-2207.424] (-2218.863) * (-2218.607) (-2219.713) (-2227.131) [-2209.888] -- 0:05:24
665000 -- (-2211.125) (-2240.269) (-2226.159) [-2205.966] * (-2238.706) (-2224.102) [-2209.008] (-2223.021) -- 0:05:23
Average standard deviation of split frequencies: 0.009591
666000 -- (-2228.018) (-2220.756) (-2217.749) [-2201.893] * (-2224.738) (-2208.950) (-2213.538) [-2221.565] -- 0:05:22
667000 -- (-2227.792) (-2221.000) (-2221.407) [-2220.620] * [-2231.511] (-2226.933) (-2221.391) (-2225.084) -- 0:05:22
668000 -- (-2223.119) (-2224.013) (-2215.818) [-2214.843] * [-2220.330] (-2238.227) (-2226.616) (-2225.968) -- 0:05:21
669000 -- (-2251.994) (-2227.707) [-2223.114] (-2214.130) * (-2224.154) (-2231.430) [-2230.927] (-2251.283) -- 0:05:20
670000 -- (-2245.720) [-2214.416] (-2218.455) (-2213.334) * (-2230.139) [-2214.364] (-2212.695) (-2222.464) -- 0:05:19
Average standard deviation of split frequencies: 0.009501
671000 -- (-2235.988) [-2219.079] (-2230.154) (-2223.409) * (-2230.379) (-2229.886) (-2221.649) [-2206.810] -- 0:05:18
672000 -- (-2229.836) (-2236.472) [-2209.585] (-2235.975) * (-2240.143) (-2233.428) (-2217.784) [-2218.008] -- 0:05:17
673000 -- [-2219.692] (-2232.661) (-2223.819) (-2225.499) * (-2251.305) (-2249.339) [-2226.263] (-2225.770) -- 0:05:16
674000 -- [-2212.619] (-2226.042) (-2222.212) (-2248.494) * (-2231.381) (-2227.664) [-2217.642] (-2216.083) -- 0:05:15
675000 -- (-2226.118) [-2225.096] (-2228.124) (-2239.396) * (-2237.296) [-2230.869] (-2232.853) (-2240.214) -- 0:05:14
Average standard deviation of split frequencies: 0.009018
676000 -- (-2226.081) [-2206.624] (-2233.899) (-2224.299) * (-2232.290) (-2235.575) (-2225.938) [-2219.562] -- 0:05:13
677000 -- (-2216.215) [-2222.177] (-2227.414) (-2219.326) * (-2225.297) (-2231.394) [-2205.443] (-2234.985) -- 0:05:12
678000 -- (-2229.765) [-2216.451] (-2227.435) (-2212.739) * (-2237.551) (-2212.908) (-2244.024) [-2211.642] -- 0:05:11
679000 -- (-2234.059) (-2219.687) [-2213.046] (-2220.814) * (-2230.219) (-2218.149) (-2240.330) [-2216.053] -- 0:05:10
680000 -- (-2242.432) (-2216.923) [-2231.519] (-2217.857) * [-2226.388] (-2227.483) (-2244.318) (-2229.593) -- 0:05:09
Average standard deviation of split frequencies: 0.009275
681000 -- (-2216.211) (-2235.547) (-2211.657) [-2208.743] * (-2212.435) [-2216.127] (-2244.565) (-2219.471) -- 0:05:08
682000 -- (-2224.328) (-2215.340) (-2227.797) [-2208.330] * [-2210.673] (-2239.682) (-2222.550) (-2217.759) -- 0:05:07
683000 -- (-2247.190) (-2213.545) (-2226.471) [-2216.941] * [-2218.973] (-2234.035) (-2235.905) (-2227.764) -- 0:05:06
684000 -- [-2229.514] (-2222.588) (-2229.900) (-2216.007) * (-2219.900) (-2234.329) (-2231.796) [-2203.007] -- 0:05:05
685000 -- (-2231.314) (-2224.802) (-2241.800) [-2206.135] * (-2239.660) (-2222.689) (-2231.832) [-2207.997] -- 0:05:04
Average standard deviation of split frequencies: 0.009151
686000 -- (-2230.276) (-2215.812) (-2240.120) [-2204.939] * (-2246.031) (-2221.592) (-2217.858) [-2215.400] -- 0:05:03
687000 -- (-2219.629) (-2222.443) [-2209.188] (-2238.951) * (-2230.749) (-2225.560) (-2231.530) [-2219.488] -- 0:05:02
688000 -- [-2219.917] (-2231.794) (-2221.038) (-2229.832) * (-2235.495) [-2221.575] (-2214.654) (-2223.567) -- 0:05:02
689000 -- [-2223.547] (-2231.803) (-2230.991) (-2236.072) * (-2225.359) (-2243.695) (-2237.106) [-2209.786] -- 0:05:01
690000 -- [-2224.421] (-2219.221) (-2217.565) (-2254.086) * (-2229.928) (-2227.770) (-2233.071) [-2216.394] -- 0:05:00
Average standard deviation of split frequencies: 0.009328
691000 -- [-2215.979] (-2230.180) (-2205.488) (-2225.083) * [-2212.734] (-2224.216) (-2233.472) (-2232.742) -- 0:04:59
692000 -- [-2208.101] (-2229.947) (-2216.061) (-2253.288) * (-2219.145) [-2210.873] (-2232.316) (-2236.469) -- 0:04:58
693000 -- (-2221.323) [-2207.567] (-2214.964) (-2228.020) * [-2215.361] (-2230.034) (-2246.690) (-2219.551) -- 0:04:57
694000 -- (-2223.771) [-2207.601] (-2237.985) (-2226.508) * [-2213.106] (-2218.997) (-2214.689) (-2243.996) -- 0:04:55
695000 -- [-2207.156] (-2222.410) (-2223.513) (-2224.580) * (-2234.582) [-2218.675] (-2215.499) (-2222.511) -- 0:04:54
Average standard deviation of split frequencies: 0.009187
696000 -- (-2225.210) (-2218.599) [-2220.434] (-2232.247) * [-2222.227] (-2217.886) (-2212.293) (-2255.327) -- 0:04:53
697000 -- [-2232.653] (-2217.938) (-2208.576) (-2227.122) * [-2217.976] (-2219.688) (-2228.972) (-2233.792) -- 0:04:53
698000 -- (-2223.718) [-2222.047] (-2217.604) (-2222.509) * (-2216.853) (-2225.331) [-2222.005] (-2234.901) -- 0:04:52
699000 -- [-2221.948] (-2208.801) (-2236.151) (-2226.423) * [-2218.225] (-2218.984) (-2230.400) (-2218.966) -- 0:04:51
700000 -- [-2216.082] (-2232.128) (-2226.186) (-2228.515) * (-2212.771) [-2210.769] (-2225.126) (-2234.848) -- 0:04:50
Average standard deviation of split frequencies: 0.009358
701000 -- (-2223.418) [-2228.536] (-2240.811) (-2228.565) * (-2225.134) [-2219.338] (-2226.969) (-2228.512) -- 0:04:49
702000 -- (-2253.052) (-2225.471) [-2217.861] (-2229.145) * (-2232.355) [-2215.827] (-2233.024) (-2224.496) -- 0:04:48
703000 -- (-2233.829) (-2223.440) [-2214.459] (-2224.029) * (-2216.088) [-2217.408] (-2222.304) (-2212.859) -- 0:04:47
704000 -- (-2236.922) (-2224.379) (-2226.963) [-2218.161] * [-2212.015] (-2205.976) (-2205.855) (-2212.220) -- 0:04:46
705000 -- (-2225.610) (-2216.736) [-2198.764] (-2222.368) * [-2214.540] (-2221.942) (-2235.566) (-2229.647) -- 0:04:45
Average standard deviation of split frequencies: 0.009631
706000 -- (-2222.026) (-2219.911) [-2202.624] (-2236.351) * [-2224.640] (-2208.558) (-2216.860) (-2218.519) -- 0:04:44
707000 -- (-2218.470) (-2225.293) [-2213.349] (-2217.231) * (-2241.382) [-2212.290] (-2212.306) (-2217.855) -- 0:04:43
708000 -- (-2224.961) [-2224.374] (-2226.885) (-2221.247) * (-2229.369) (-2231.881) [-2210.706] (-2206.465) -- 0:04:42
709000 -- (-2234.506) [-2213.478] (-2210.287) (-2240.553) * [-2212.879] (-2234.272) (-2212.186) (-2215.203) -- 0:04:41
710000 -- [-2212.061] (-2231.615) (-2230.845) (-2223.865) * [-2221.413] (-2215.268) (-2217.412) (-2220.880) -- 0:04:40
Average standard deviation of split frequencies: 0.009447
711000 -- [-2218.565] (-2216.891) (-2236.770) (-2232.450) * (-2236.167) (-2212.408) (-2230.579) [-2212.289] -- 0:04:39
712000 -- [-2225.092] (-2209.914) (-2235.158) (-2228.121) * (-2226.271) [-2225.530] (-2235.095) (-2224.119) -- 0:04:38
713000 -- (-2229.890) [-2216.459] (-2245.413) (-2236.316) * (-2223.354) [-2218.626] (-2226.800) (-2217.912) -- 0:04:37
714000 -- (-2227.654) (-2232.582) (-2235.659) [-2226.016] * (-2227.968) [-2224.661] (-2235.220) (-2215.246) -- 0:04:36
715000 -- (-2251.513) (-2217.405) (-2239.451) [-2215.007] * (-2213.514) (-2234.018) [-2213.904] (-2201.706) -- 0:04:35
Average standard deviation of split frequencies: 0.009467
716000 -- [-2215.891] (-2217.823) (-2249.157) (-2217.654) * (-2226.983) (-2222.083) [-2225.241] (-2224.756) -- 0:04:34
717000 -- (-2225.665) (-2227.321) (-2222.457) [-2224.182] * [-2229.294] (-2222.830) (-2224.725) (-2221.696) -- 0:04:33
718000 -- (-2216.800) [-2220.117] (-2223.569) (-2230.526) * (-2234.328) (-2238.698) (-2243.087) [-2214.055] -- 0:04:32
719000 -- (-2232.909) (-2233.208) [-2213.953] (-2230.238) * (-2231.919) (-2226.276) [-2212.635] (-2226.817) -- 0:04:32
720000 -- (-2214.700) (-2221.628) (-2230.730) [-2217.585] * (-2227.057) (-2219.533) (-2223.791) [-2218.785] -- 0:04:31
Average standard deviation of split frequencies: 0.009672
721000 -- [-2221.885] (-2213.610) (-2228.861) (-2218.277) * (-2229.037) (-2232.990) (-2227.869) [-2225.959] -- 0:04:30
722000 -- (-2234.193) (-2234.031) (-2220.629) [-2216.360] * (-2236.904) [-2208.242] (-2227.532) (-2237.574) -- 0:04:29
723000 -- (-2226.329) (-2239.687) [-2212.673] (-2221.517) * (-2221.276) (-2248.369) [-2216.314] (-2246.126) -- 0:04:28
724000 -- (-2241.856) [-2222.833] (-2214.669) (-2237.760) * (-2229.855) [-2217.433] (-2232.431) (-2229.287) -- 0:04:27
725000 -- (-2207.843) (-2224.925) (-2218.363) [-2217.157] * (-2237.006) [-2213.753] (-2230.340) (-2219.971) -- 0:04:26
Average standard deviation of split frequencies: 0.009270
726000 -- [-2214.642] (-2223.976) (-2230.482) (-2227.582) * (-2225.743) (-2218.105) [-2214.248] (-2208.180) -- 0:04:24
727000 -- (-2217.326) [-2238.955] (-2238.683) (-2226.036) * (-2222.927) (-2239.198) [-2227.532] (-2235.050) -- 0:04:23
728000 -- [-2222.458] (-2233.310) (-2221.063) (-2222.619) * (-2221.999) (-2238.259) [-2218.437] (-2209.503) -- 0:04:23
729000 -- (-2225.305) (-2219.091) [-2201.624] (-2223.073) * (-2219.833) (-2226.275) [-2218.380] (-2216.882) -- 0:04:22
730000 -- (-2228.754) (-2221.202) [-2211.446] (-2213.969) * (-2223.552) (-2241.378) [-2225.326] (-2227.256) -- 0:04:21
Average standard deviation of split frequencies: 0.009142
731000 -- (-2228.970) (-2240.123) [-2217.094] (-2244.110) * (-2248.982) (-2228.621) (-2235.168) [-2218.228] -- 0:04:20
732000 -- (-2235.257) (-2246.578) [-2223.678] (-2216.366) * (-2226.250) [-2208.691] (-2220.456) (-2220.926) -- 0:04:19
733000 -- (-2244.194) (-2213.354) [-2235.844] (-2219.190) * (-2219.788) [-2210.202] (-2214.963) (-2227.508) -- 0:04:18
734000 -- [-2212.190] (-2223.305) (-2248.167) (-2244.495) * (-2228.147) (-2215.260) [-2215.948] (-2230.908) -- 0:04:17
735000 -- [-2207.992] (-2221.831) (-2222.344) (-2227.223) * (-2233.324) (-2220.238) (-2228.283) [-2226.566] -- 0:04:16
Average standard deviation of split frequencies: 0.009254
736000 -- [-2206.124] (-2242.264) (-2218.451) (-2217.139) * [-2215.928] (-2225.678) (-2226.802) (-2219.331) -- 0:04:15
737000 -- [-2220.542] (-2234.475) (-2219.639) (-2223.813) * (-2241.754) (-2234.043) (-2226.939) [-2208.690] -- 0:04:14
738000 -- (-2224.160) (-2223.349) (-2253.546) [-2220.972] * (-2243.711) [-2208.283] (-2217.614) (-2214.695) -- 0:04:13
739000 -- [-2213.507] (-2221.802) (-2226.343) (-2236.806) * (-2206.220) [-2215.127] (-2216.418) (-2217.020) -- 0:04:12
740000 -- [-2217.778] (-2211.905) (-2228.167) (-2220.832) * (-2216.630) (-2235.923) (-2240.629) [-2218.441] -- 0:04:11
Average standard deviation of split frequencies: 0.009258
741000 -- (-2218.809) (-2234.068) (-2224.608) [-2209.747] * [-2220.287] (-2223.983) (-2230.364) (-2232.924) -- 0:04:10
742000 -- [-2215.522] (-2244.382) (-2213.798) (-2227.510) * [-2219.575] (-2205.720) (-2230.584) (-2244.490) -- 0:04:09
743000 -- (-2219.691) (-2225.966) (-2234.705) [-2226.894] * (-2231.430) (-2215.164) (-2222.637) [-2214.185] -- 0:04:08
744000 -- (-2228.419) [-2236.393] (-2226.115) (-2225.050) * (-2247.424) (-2219.927) (-2222.077) [-2215.404] -- 0:04:07
745000 -- (-2225.464) (-2225.031) (-2228.975) [-2209.039] * (-2228.859) (-2228.965) (-2228.174) [-2208.764] -- 0:04:06
Average standard deviation of split frequencies: 0.009124
746000 -- (-2224.975) [-2214.296] (-2227.342) (-2220.114) * [-2228.296] (-2227.832) (-2230.553) (-2226.733) -- 0:04:05
747000 -- [-2219.508] (-2216.816) (-2242.199) (-2223.611) * (-2212.427) (-2233.005) [-2210.405] (-2235.674) -- 0:04:04
748000 -- (-2216.370) (-2225.894) [-2221.169] (-2218.679) * (-2224.052) (-2229.786) [-2217.799] (-2226.832) -- 0:04:03
749000 -- (-2239.017) (-2233.736) [-2215.105] (-2221.927) * (-2217.474) [-2216.200] (-2228.809) (-2218.545) -- 0:04:02
750000 -- (-2226.211) [-2227.692] (-2219.190) (-2246.393) * (-2233.015) (-2222.398) (-2211.068) [-2213.752] -- 0:04:02
Average standard deviation of split frequencies: 0.009127
751000 -- (-2228.763) [-2205.472] (-2235.864) (-2224.333) * [-2219.224] (-2251.977) (-2224.123) (-2224.840) -- 0:04:01
752000 -- [-2214.650] (-2221.458) (-2209.551) (-2231.558) * (-2239.108) (-2234.300) (-2223.822) [-2225.693] -- 0:04:00
753000 -- (-2225.824) [-2217.322] (-2229.666) (-2226.966) * (-2244.808) (-2221.546) [-2217.987] (-2217.869) -- 0:03:59
754000 -- (-2234.981) [-2227.444] (-2241.445) (-2233.047) * [-2218.823] (-2230.284) (-2206.174) (-2244.792) -- 0:03:58
755000 -- [-2214.568] (-2215.030) (-2228.496) (-2228.905) * [-2205.933] (-2222.556) (-2222.726) (-2230.122) -- 0:03:57
Average standard deviation of split frequencies: 0.008511
756000 -- (-2220.503) (-2223.097) [-2208.194] (-2219.971) * (-2218.086) [-2213.527] (-2235.133) (-2222.267) -- 0:03:56
757000 -- (-2211.922) [-2227.926] (-2224.891) (-2235.818) * (-2223.299) [-2228.341] (-2223.888) (-2236.567) -- 0:03:55
758000 -- (-2215.009) [-2217.888] (-2242.861) (-2235.155) * [-2213.908] (-2212.269) (-2251.164) (-2217.863) -- 0:03:54
759000 -- [-2226.184] (-2229.060) (-2228.038) (-2232.861) * [-2201.829] (-2244.161) (-2234.731) (-2223.508) -- 0:03:53
760000 -- (-2235.468) [-2218.399] (-2225.062) (-2223.463) * (-2223.480) (-2235.459) (-2236.449) [-2219.607] -- 0:03:52
Average standard deviation of split frequencies: 0.008783
761000 -- (-2233.244) (-2218.459) [-2224.599] (-2237.276) * (-2239.708) (-2229.807) (-2228.691) [-2221.657] -- 0:03:51
762000 -- (-2227.609) (-2225.311) [-2208.209] (-2223.903) * [-2212.338] (-2228.647) (-2220.252) (-2231.082) -- 0:03:50
763000 -- [-2211.170] (-2229.787) (-2214.476) (-2229.395) * (-2232.967) (-2216.999) [-2206.685] (-2219.821) -- 0:03:49
764000 -- (-2226.082) (-2246.253) (-2229.624) [-2217.444] * (-2235.781) (-2236.525) [-2226.365] (-2217.833) -- 0:03:48
765000 -- (-2233.980) (-2225.888) (-2243.433) [-2225.110] * (-2241.764) [-2227.257] (-2235.645) (-2226.191) -- 0:03:47
Average standard deviation of split frequencies: 0.008811
766000 -- (-2221.107) [-2223.037] (-2232.966) (-2231.004) * (-2232.383) (-2214.979) (-2246.344) [-2210.730] -- 0:03:46
767000 -- (-2228.843) (-2222.297) [-2227.657] (-2221.644) * (-2230.197) (-2221.079) (-2215.452) [-2211.080] -- 0:03:45
768000 -- (-2226.742) [-2212.889] (-2204.124) (-2219.224) * [-2217.551] (-2224.023) (-2220.173) (-2228.253) -- 0:03:44
769000 -- (-2226.497) (-2223.136) (-2227.369) [-2203.629] * (-2246.047) [-2220.132] (-2222.713) (-2224.752) -- 0:03:43
770000 -- (-2221.625) [-2227.068] (-2225.475) (-2216.062) * [-2232.216] (-2243.148) (-2236.065) (-2221.292) -- 0:03:42
Average standard deviation of split frequencies: 0.008732
771000 -- (-2212.072) (-2224.857) [-2218.547] (-2219.835) * (-2229.110) (-2243.873) (-2234.625) [-2222.508] -- 0:03:41
772000 -- [-2207.814] (-2221.488) (-2241.522) (-2227.913) * (-2230.124) [-2229.720] (-2211.989) (-2223.316) -- 0:03:40
773000 -- (-2225.482) (-2243.920) (-2232.646) [-2212.070] * (-2237.666) [-2216.247] (-2236.542) (-2229.049) -- 0:03:39
774000 -- (-2227.219) (-2206.245) (-2212.608) [-2210.725] * (-2231.804) (-2221.990) (-2239.436) [-2222.800] -- 0:03:38
775000 -- (-2223.038) [-2221.709] (-2240.193) (-2220.578) * (-2236.549) (-2217.689) [-2216.923] (-2229.449) -- 0:03:37
Average standard deviation of split frequencies: 0.008841
776000 -- [-2215.809] (-2235.553) (-2217.361) (-2210.676) * (-2231.105) [-2229.925] (-2231.786) (-2229.041) -- 0:03:36
777000 -- (-2216.691) (-2231.088) (-2222.356) [-2213.897] * [-2217.113] (-2224.153) (-2240.974) (-2215.566) -- 0:03:35
778000 -- (-2221.735) (-2227.216) (-2230.044) [-2220.268] * [-2216.170] (-2246.242) (-2220.157) (-2227.414) -- 0:03:34
779000 -- (-2230.379) (-2216.995) (-2238.907) [-2213.066] * (-2237.873) (-2226.635) [-2220.185] (-2210.481) -- 0:03:33
780000 -- [-2222.071] (-2205.006) (-2226.177) (-2240.768) * (-2233.033) (-2207.531) (-2231.063) [-2227.767] -- 0:03:32
Average standard deviation of split frequencies: 0.008838
781000 -- (-2248.760) [-2217.528] (-2226.156) (-2226.770) * (-2232.878) [-2221.261] (-2220.964) (-2219.509) -- 0:03:31
782000 -- (-2246.917) (-2215.977) (-2235.421) [-2216.366] * (-2226.658) [-2213.255] (-2241.061) (-2222.612) -- 0:03:31
783000 -- [-2216.408] (-2216.833) (-2227.057) (-2232.102) * (-2223.348) (-2227.257) (-2256.940) [-2209.793] -- 0:03:30
784000 -- (-2251.656) (-2227.277) [-2210.138] (-2208.014) * (-2235.242) [-2214.232] (-2219.953) (-2224.027) -- 0:03:29
785000 -- [-2224.884] (-2238.110) (-2209.706) (-2217.446) * (-2232.963) (-2216.065) (-2212.690) [-2207.398] -- 0:03:28
Average standard deviation of split frequencies: 0.008620
786000 -- [-2226.698] (-2211.837) (-2230.820) (-2246.654) * (-2224.717) (-2218.469) (-2223.314) [-2225.403] -- 0:03:27
787000 -- (-2235.948) [-2229.058] (-2226.396) (-2245.483) * [-2218.019] (-2231.745) (-2214.308) (-2229.825) -- 0:03:26
788000 -- (-2228.272) (-2215.701) (-2221.291) [-2221.642] * [-2208.482] (-2242.075) (-2210.001) (-2212.084) -- 0:03:25
789000 -- (-2216.503) [-2212.364] (-2211.974) (-2224.221) * (-2215.480) (-2232.337) [-2226.010] (-2227.906) -- 0:03:24
790000 -- (-2233.238) [-2221.164] (-2215.942) (-2239.422) * [-2217.693] (-2236.786) (-2238.171) (-2209.431) -- 0:03:23
Average standard deviation of split frequencies: 0.008912
791000 -- [-2235.654] (-2237.034) (-2230.447) (-2208.250) * (-2221.436) [-2213.191] (-2229.248) (-2229.625) -- 0:03:22
792000 -- (-2221.271) (-2244.293) [-2212.693] (-2228.204) * (-2232.206) (-2213.052) (-2229.446) [-2223.788] -- 0:03:21
793000 -- (-2220.732) (-2241.699) (-2225.251) [-2209.473] * [-2207.956] (-2232.054) (-2230.538) (-2229.623) -- 0:03:20
794000 -- [-2225.696] (-2211.287) (-2223.439) (-2232.864) * (-2226.290) [-2217.606] (-2225.852) (-2222.645) -- 0:03:19
795000 -- (-2226.512) [-2235.296] (-2229.845) (-2244.671) * (-2240.877) (-2218.853) [-2211.176] (-2222.139) -- 0:03:18
Average standard deviation of split frequencies: 0.008703
796000 -- [-2210.942] (-2241.342) (-2219.636) (-2224.185) * (-2230.566) [-2227.577] (-2227.547) (-2221.562) -- 0:03:17
797000 -- [-2213.272] (-2233.806) (-2227.961) (-2235.645) * [-2208.740] (-2228.928) (-2221.581) (-2241.486) -- 0:03:16
798000 -- (-2218.450) (-2224.475) [-2216.648] (-2227.482) * (-2215.936) [-2216.529] (-2226.549) (-2232.272) -- 0:03:15
799000 -- (-2232.846) [-2212.207] (-2213.274) (-2228.079) * (-2228.965) [-2206.459] (-2236.975) (-2229.918) -- 0:03:14
800000 -- (-2232.396) (-2243.105) [-2205.452] (-2236.839) * (-2226.487) [-2231.748] (-2209.408) (-2220.615) -- 0:03:13
Average standard deviation of split frequencies: 0.008506
801000 -- (-2227.230) [-2218.810] (-2224.655) (-2219.009) * (-2231.319) (-2216.641) [-2214.269] (-2222.752) -- 0:03:12
802000 -- [-2208.482] (-2237.043) (-2222.594) (-2206.778) * (-2236.057) (-2234.226) (-2215.719) [-2202.438] -- 0:03:11
803000 -- (-2224.472) [-2236.549] (-2225.797) (-2208.740) * (-2230.411) (-2222.581) [-2216.478] (-2214.678) -- 0:03:10
804000 -- (-2232.547) [-2214.478] (-2236.093) (-2222.737) * (-2219.375) [-2223.169] (-2206.933) (-2232.983) -- 0:03:09
805000 -- (-2224.999) [-2207.561] (-2247.058) (-2241.570) * (-2243.637) (-2219.535) [-2210.224] (-2220.565) -- 0:03:08
Average standard deviation of split frequencies: 0.008390
806000 -- (-2224.216) (-2219.981) (-2213.982) [-2231.125] * (-2214.800) [-2215.483] (-2211.808) (-2242.285) -- 0:03:07
807000 -- (-2245.364) (-2237.569) (-2231.843) [-2219.647] * (-2218.008) (-2227.129) [-2229.180] (-2241.762) -- 0:03:06
808000 -- (-2233.520) (-2227.894) [-2217.746] (-2226.860) * (-2228.692) (-2232.409) [-2231.452] (-2211.822) -- 0:03:05
809000 -- (-2220.065) (-2232.833) [-2207.973] (-2223.114) * (-2206.852) [-2212.932] (-2232.159) (-2224.816) -- 0:03:04
810000 -- (-2241.704) (-2231.273) (-2219.285) [-2217.438] * [-2220.778] (-2228.429) (-2250.299) (-2223.043) -- 0:03:03
Average standard deviation of split frequencies: 0.008482
811000 -- (-2230.151) (-2223.657) [-2207.075] (-2231.278) * (-2225.510) (-2218.932) (-2231.517) [-2213.612] -- 0:03:02
812000 -- (-2218.476) (-2219.925) (-2232.849) [-2210.269] * (-2245.807) [-2221.714] (-2215.790) (-2227.346) -- 0:03:01
813000 -- (-2218.779) (-2241.930) (-2235.999) [-2210.955] * (-2215.014) (-2217.823) [-2227.460] (-2241.731) -- 0:03:01
814000 -- (-2226.910) (-2229.536) (-2257.745) [-2214.836] * [-2214.310] (-2222.687) (-2227.088) (-2221.704) -- 0:03:00
815000 -- [-2227.207] (-2243.224) (-2223.858) (-2227.974) * (-2213.490) (-2233.283) [-2221.242] (-2220.509) -- 0:02:59
Average standard deviation of split frequencies: 0.008473
816000 -- (-2221.412) (-2242.470) (-2221.584) [-2213.110] * (-2215.658) (-2218.891) (-2226.755) [-2214.001] -- 0:02:58
817000 -- [-2197.906] (-2226.489) (-2226.117) (-2230.997) * (-2237.130) (-2221.577) (-2222.539) [-2214.609] -- 0:02:57
818000 -- [-2202.858] (-2225.489) (-2228.004) (-2223.118) * (-2220.238) [-2228.861] (-2233.578) (-2222.809) -- 0:02:56
819000 -- (-2201.751) [-2206.427] (-2244.383) (-2215.216) * (-2235.462) (-2220.224) [-2218.673] (-2222.939) -- 0:02:55
820000 -- (-2220.417) (-2209.630) (-2247.692) [-2211.224] * (-2226.563) (-2237.723) (-2234.414) [-2220.730] -- 0:02:54
Average standard deviation of split frequencies: 0.008856
821000 -- (-2239.077) (-2216.298) (-2241.651) [-2218.757] * (-2225.903) [-2230.913] (-2218.663) (-2218.853) -- 0:02:53
822000 -- (-2224.016) [-2209.876] (-2235.580) (-2211.678) * (-2239.570) [-2207.241] (-2225.908) (-2218.455) -- 0:02:52
823000 -- (-2223.667) (-2222.801) (-2226.675) [-2213.605] * (-2242.584) (-2218.102) [-2204.872] (-2228.679) -- 0:02:51
824000 -- (-2228.958) (-2227.802) [-2212.950] (-2213.136) * [-2219.897] (-2221.634) (-2220.136) (-2222.615) -- 0:02:50
825000 -- (-2220.691) (-2218.060) [-2217.742] (-2243.740) * (-2231.887) [-2219.801] (-2216.807) (-2216.942) -- 0:02:49
Average standard deviation of split frequencies: 0.008921
826000 -- (-2225.040) [-2209.297] (-2226.550) (-2232.985) * (-2237.516) [-2211.351] (-2230.678) (-2201.805) -- 0:02:48
827000 -- [-2219.968] (-2224.416) (-2236.333) (-2213.162) * (-2220.744) [-2224.065] (-2231.091) (-2213.507) -- 0:02:47
828000 -- (-2246.074) (-2221.274) (-2223.333) [-2234.690] * (-2225.385) (-2216.312) (-2228.612) [-2222.620] -- 0:02:46
829000 -- (-2232.479) (-2219.988) [-2207.082] (-2220.319) * (-2228.296) (-2223.432) [-2212.583] (-2242.332) -- 0:02:45
830000 -- (-2229.101) [-2212.890] (-2207.568) (-2217.226) * (-2225.956) (-2226.807) [-2202.947] (-2222.588) -- 0:02:44
Average standard deviation of split frequencies: 0.008990
831000 -- [-2204.958] (-2227.245) (-2230.472) (-2220.509) * (-2247.493) [-2214.971] (-2237.319) (-2239.575) -- 0:02:43
832000 -- (-2217.371) [-2217.730] (-2216.313) (-2223.883) * [-2210.548] (-2219.528) (-2226.102) (-2215.502) -- 0:02:42
833000 -- (-2222.123) (-2242.029) (-2234.598) [-2215.656] * [-2220.937] (-2223.783) (-2226.521) (-2242.954) -- 0:02:41
834000 -- (-2203.479) (-2230.190) (-2222.482) [-2233.615] * (-2231.833) (-2221.346) [-2226.372] (-2230.896) -- 0:02:40
835000 -- (-2214.057) [-2209.084] (-2227.012) (-2220.545) * [-2220.855] (-2223.193) (-2224.270) (-2225.090) -- 0:02:39
Average standard deviation of split frequencies: 0.009180
836000 -- [-2212.157] (-2206.441) (-2230.916) (-2217.685) * (-2239.230) [-2211.552] (-2213.858) (-2232.726) -- 0:02:38
837000 -- [-2213.279] (-2214.838) (-2221.429) (-2232.208) * [-2207.548] (-2232.890) (-2236.110) (-2223.638) -- 0:02:37
838000 -- [-2213.947] (-2222.827) (-2221.836) (-2214.690) * [-2207.080] (-2220.406) (-2228.178) (-2232.128) -- 0:02:36
839000 -- [-2210.860] (-2219.807) (-2226.209) (-2221.315) * (-2212.303) (-2233.533) (-2224.738) [-2210.908] -- 0:02:36
840000 -- (-2234.712) [-2204.388] (-2234.024) (-2228.404) * (-2223.116) (-2246.727) [-2216.418] (-2232.222) -- 0:02:35
Average standard deviation of split frequencies: 0.009072
841000 -- [-2220.762] (-2214.637) (-2232.705) (-2226.648) * (-2233.342) (-2253.934) (-2219.949) [-2198.319] -- 0:02:34
842000 -- [-2215.066] (-2219.673) (-2232.355) (-2214.099) * (-2221.965) (-2220.926) [-2210.983] (-2221.370) -- 0:02:33
843000 -- (-2218.314) (-2214.376) (-2237.048) [-2213.355] * [-2217.471] (-2236.418) (-2219.793) (-2232.125) -- 0:02:31
844000 -- (-2208.188) (-2222.052) (-2212.984) [-2218.837] * (-2211.889) (-2233.960) (-2218.253) [-2208.183] -- 0:02:31
845000 -- [-2211.366] (-2253.702) (-2227.606) (-2224.286) * (-2222.515) [-2223.479] (-2225.893) (-2216.067) -- 0:02:30
Average standard deviation of split frequencies: 0.009007
846000 -- (-2224.012) (-2256.443) (-2219.319) [-2214.103] * (-2225.786) (-2220.398) (-2221.466) [-2200.813] -- 0:02:29
847000 -- (-2232.994) [-2213.189] (-2217.309) (-2228.476) * (-2240.302) (-2240.379) (-2247.682) [-2223.885] -- 0:02:28
848000 -- (-2249.679) [-2222.462] (-2225.491) (-2235.093) * [-2223.084] (-2218.181) (-2229.262) (-2229.656) -- 0:02:27
849000 -- [-2231.254] (-2233.141) (-2216.494) (-2252.656) * (-2212.967) (-2229.342) (-2236.088) [-2223.765] -- 0:02:26
850000 -- (-2247.727) [-2220.371] (-2224.237) (-2221.256) * [-2215.114] (-2223.134) (-2216.581) (-2254.979) -- 0:02:25
Average standard deviation of split frequencies: 0.008797
851000 -- (-2226.486) (-2220.741) (-2227.363) [-2213.697] * (-2216.601) (-2230.974) (-2229.362) [-2226.073] -- 0:02:24
852000 -- [-2226.506] (-2216.215) (-2239.708) (-2222.957) * (-2235.063) (-2235.117) [-2220.374] (-2230.144) -- 0:02:23
853000 -- (-2225.353) [-2213.533] (-2228.513) (-2221.950) * (-2236.170) (-2217.709) (-2229.472) [-2220.600] -- 0:02:22
854000 -- (-2234.535) (-2223.657) [-2228.136] (-2234.563) * (-2231.601) [-2232.789] (-2234.061) (-2223.772) -- 0:02:21
855000 -- (-2231.532) (-2231.083) [-2220.387] (-2241.193) * (-2231.093) (-2245.773) (-2214.336) [-2213.548] -- 0:02:20
Average standard deviation of split frequencies: 0.008880
856000 -- (-2240.270) (-2234.776) [-2216.598] (-2220.921) * (-2237.671) (-2226.181) [-2214.289] (-2227.976) -- 0:02:19
857000 -- (-2220.705) (-2227.519) (-2219.027) [-2227.548] * [-2225.177] (-2236.758) (-2213.293) (-2211.220) -- 0:02:18
858000 -- (-2218.710) [-2220.924] (-2232.196) (-2222.882) * (-2248.618) (-2227.156) (-2231.930) [-2222.225] -- 0:02:17
859000 -- (-2221.178) (-2244.981) [-2218.824] (-2236.780) * (-2233.301) (-2223.216) (-2225.314) [-2215.070] -- 0:02:16
860000 -- [-2209.235] (-2234.651) (-2231.906) (-2241.208) * (-2236.873) (-2228.691) [-2214.581] (-2211.025) -- 0:02:15
Average standard deviation of split frequencies: 0.008983
861000 -- (-2234.020) (-2227.179) [-2217.089] (-2224.434) * [-2205.225] (-2228.315) (-2255.952) (-2230.108) -- 0:02:14
862000 -- (-2227.845) (-2226.589) (-2206.361) [-2231.637] * (-2213.640) (-2235.937) [-2227.123] (-2236.405) -- 0:02:13
863000 -- [-2216.165] (-2256.329) (-2227.259) (-2222.282) * [-2220.785] (-2250.076) (-2233.343) (-2230.331) -- 0:02:12
864000 -- [-2216.685] (-2240.628) (-2216.646) (-2229.299) * [-2219.826] (-2228.211) (-2232.632) (-2220.604) -- 0:02:11
865000 -- (-2239.277) [-2216.985] (-2214.303) (-2224.967) * (-2229.847) (-2239.070) (-2230.673) [-2217.167] -- 0:02:10
Average standard deviation of split frequencies: 0.009205
866000 -- [-2216.234] (-2221.064) (-2227.639) (-2217.948) * (-2241.663) (-2243.960) (-2229.326) [-2219.752] -- 0:02:09
867000 -- (-2211.339) [-2203.382] (-2217.103) (-2255.841) * (-2222.493) (-2233.245) [-2222.507] (-2215.355) -- 0:02:08
868000 -- (-2218.084) (-2216.202) (-2222.397) [-2222.702] * (-2214.106) (-2235.929) [-2208.898] (-2220.507) -- 0:02:07
869000 -- [-2221.821] (-2214.342) (-2224.474) (-2227.931) * (-2234.161) (-2228.907) [-2216.919] (-2226.176) -- 0:02:06
870000 -- (-2223.576) [-2229.126] (-2211.048) (-2228.873) * (-2235.905) [-2211.402] (-2214.774) (-2241.786) -- 0:02:05
Average standard deviation of split frequencies: 0.009033
871000 -- (-2223.269) (-2225.640) [-2212.514] (-2222.898) * (-2232.985) (-2236.276) [-2204.870] (-2208.216) -- 0:02:05
872000 -- (-2239.123) (-2239.278) (-2215.825) [-2211.638] * (-2228.852) [-2210.677] (-2202.338) (-2220.690) -- 0:02:04
873000 -- (-2228.520) (-2233.647) [-2203.045] (-2220.224) * (-2233.164) [-2211.063] (-2235.845) (-2229.032) -- 0:02:03
874000 -- (-2230.853) (-2226.287) [-2217.988] (-2230.668) * (-2234.466) (-2217.063) (-2229.433) [-2206.928] -- 0:02:02
875000 -- (-2231.788) (-2228.740) [-2221.316] (-2238.746) * (-2218.485) [-2206.171] (-2237.447) (-2216.581) -- 0:02:01
Average standard deviation of split frequencies: 0.009002
876000 -- (-2237.874) (-2225.151) (-2234.628) [-2206.660] * (-2229.547) (-2218.487) (-2215.961) [-2215.506] -- 0:02:00
877000 -- (-2229.709) (-2223.946) (-2216.842) [-2209.831] * [-2214.840] (-2238.779) (-2230.941) (-2243.067) -- 0:01:59
878000 -- (-2238.123) (-2221.147) (-2233.167) [-2205.123] * [-2205.591] (-2220.835) (-2220.608) (-2225.882) -- 0:01:58
879000 -- (-2231.798) [-2214.714] (-2223.499) (-2202.432) * (-2222.980) (-2234.414) [-2215.275] (-2221.761) -- 0:01:57
880000 -- (-2238.583) (-2219.236) [-2219.847] (-2206.376) * (-2228.710) [-2220.768] (-2218.072) (-2245.605) -- 0:01:56
Average standard deviation of split frequencies: 0.009241
881000 -- (-2243.374) (-2220.154) (-2234.028) [-2211.619] * (-2233.535) [-2221.307] (-2212.614) (-2249.520) -- 0:01:55
882000 -- (-2241.665) [-2209.753] (-2220.032) (-2233.346) * (-2226.297) [-2224.181] (-2202.733) (-2230.393) -- 0:01:54
883000 -- [-2230.543] (-2228.858) (-2229.895) (-2253.781) * (-2224.863) (-2224.719) [-2212.290] (-2232.201) -- 0:01:53
884000 -- (-2227.208) (-2243.241) [-2215.330] (-2219.681) * (-2232.993) (-2227.622) (-2227.729) [-2222.571] -- 0:01:52
885000 -- (-2219.293) (-2231.321) (-2213.028) [-2212.770] * (-2228.568) (-2209.250) (-2217.248) [-2216.273] -- 0:01:51
Average standard deviation of split frequencies: 0.009120
886000 -- (-2224.413) [-2224.928] (-2217.081) (-2208.116) * (-2232.996) (-2205.534) [-2207.750] (-2242.530) -- 0:01:50
887000 -- (-2236.687) (-2222.939) [-2218.316] (-2215.666) * (-2237.946) [-2210.136] (-2217.663) (-2224.399) -- 0:01:49
888000 -- (-2239.054) (-2223.013) [-2202.625] (-2217.135) * (-2238.175) [-2211.252] (-2237.895) (-2223.357) -- 0:01:48
889000 -- (-2242.446) [-2217.745] (-2219.936) (-2219.140) * (-2224.685) [-2205.441] (-2241.135) (-2210.886) -- 0:01:47
890000 -- (-2221.452) [-2208.435] (-2224.810) (-2217.035) * (-2238.169) [-2207.226] (-2250.591) (-2226.139) -- 0:01:46
Average standard deviation of split frequencies: 0.008950
891000 -- (-2224.118) (-2226.716) (-2238.685) [-2219.012] * (-2230.754) (-2223.607) (-2248.842) [-2206.827] -- 0:01:45
892000 -- (-2215.590) (-2208.668) [-2218.911] (-2225.055) * (-2251.336) (-2202.317) (-2236.226) [-2212.619] -- 0:01:44
893000 -- (-2232.435) (-2220.335) [-2212.296] (-2207.144) * (-2233.455) (-2217.629) (-2237.715) [-2233.083] -- 0:01:43
894000 -- [-2204.776] (-2246.770) (-2216.524) (-2216.541) * (-2244.458) (-2220.475) (-2218.925) [-2211.329] -- 0:01:42
895000 -- (-2232.758) (-2222.466) (-2214.949) [-2218.555] * (-2224.124) (-2235.451) (-2234.488) [-2218.781] -- 0:01:41
Average standard deviation of split frequencies: 0.008728
896000 -- (-2236.659) (-2236.234) [-2204.714] (-2217.986) * (-2237.175) [-2213.655] (-2228.821) (-2228.900) -- 0:01:40
897000 -- (-2252.364) (-2234.568) (-2219.824) [-2213.968] * [-2223.983] (-2213.211) (-2233.277) (-2222.790) -- 0:01:39
898000 -- [-2226.114] (-2237.979) (-2235.097) (-2234.341) * [-2213.296] (-2222.928) (-2234.871) (-2219.492) -- 0:01:38
899000 -- [-2218.630] (-2233.185) (-2224.884) (-2235.965) * (-2220.933) (-2238.182) (-2244.236) [-2221.528] -- 0:01:37
900000 -- [-2218.577] (-2239.097) (-2215.480) (-2225.115) * (-2229.105) (-2240.050) (-2241.243) [-2228.138] -- 0:01:36
Average standard deviation of split frequencies: 0.008945
901000 -- (-2207.529) [-2216.406] (-2225.207) (-2234.723) * [-2209.081] (-2233.495) (-2228.335) (-2220.387) -- 0:01:35
902000 -- [-2237.604] (-2222.152) (-2225.333) (-2217.575) * (-2231.409) (-2233.641) (-2214.619) [-2226.347] -- 0:01:34
903000 -- (-2232.738) (-2232.251) [-2225.076] (-2229.127) * [-2213.798] (-2229.676) (-2236.758) (-2236.415) -- 0:01:33
904000 -- (-2243.643) (-2230.348) [-2212.275] (-2227.334) * [-2225.551] (-2242.706) (-2222.959) (-2230.610) -- 0:01:32
905000 -- (-2227.779) (-2223.611) [-2219.922] (-2229.065) * (-2240.998) (-2219.127) [-2211.515] (-2218.715) -- 0:01:31
Average standard deviation of split frequencies: 0.009222
906000 -- (-2232.559) (-2215.422) [-2228.769] (-2223.359) * (-2238.718) [-2219.768] (-2234.214) (-2237.222) -- 0:01:30
907000 -- (-2197.795) (-2229.710) (-2222.486) [-2229.624] * (-2229.801) (-2229.003) (-2233.313) [-2216.530] -- 0:01:30
908000 -- (-2215.612) (-2228.002) (-2222.905) [-2219.590] * [-2206.391] (-2212.648) (-2234.391) (-2235.210) -- 0:01:29
909000 -- [-2204.277] (-2217.790) (-2232.414) (-2228.824) * (-2208.866) (-2206.216) (-2227.632) [-2221.684] -- 0:01:28
910000 -- [-2203.405] (-2224.490) (-2238.659) (-2221.436) * (-2222.500) (-2223.211) [-2212.918] (-2216.715) -- 0:01:27
Average standard deviation of split frequencies: 0.009142
911000 -- [-2208.911] (-2223.039) (-2219.726) (-2225.207) * [-2220.290] (-2226.402) (-2232.386) (-2231.610) -- 0:01:26
912000 -- [-2206.047] (-2226.735) (-2232.920) (-2223.469) * [-2222.746] (-2235.045) (-2241.462) (-2221.726) -- 0:01:25
913000 -- (-2212.845) [-2219.017] (-2245.499) (-2241.572) * (-2212.499) (-2251.821) (-2235.515) [-2222.940] -- 0:01:24
914000 -- (-2214.598) (-2216.849) [-2218.875] (-2234.949) * (-2220.531) (-2225.091) (-2240.541) [-2202.193] -- 0:01:23
915000 -- [-2213.425] (-2220.154) (-2242.626) (-2224.619) * (-2248.867) (-2230.083) [-2231.887] (-2215.403) -- 0:01:22
Average standard deviation of split frequencies: 0.008887
916000 -- (-2217.470) [-2226.663] (-2228.946) (-2217.881) * (-2241.588) (-2234.774) [-2213.145] (-2213.844) -- 0:01:21
917000 -- (-2221.998) (-2220.947) (-2236.826) [-2215.775] * (-2232.473) (-2214.572) [-2227.044] (-2223.139) -- 0:01:20
918000 -- (-2218.855) [-2215.349] (-2246.227) (-2235.643) * (-2240.118) (-2211.646) [-2210.422] (-2226.599) -- 0:01:19
919000 -- (-2238.164) [-2217.379] (-2231.047) (-2238.575) * [-2224.905] (-2213.767) (-2216.276) (-2215.495) -- 0:01:18
920000 -- (-2237.136) [-2218.086] (-2241.825) (-2232.668) * (-2215.184) (-2225.888) (-2223.260) [-2208.660] -- 0:01:17
Average standard deviation of split frequencies: 0.008928
921000 -- (-2233.488) [-2224.651] (-2239.358) (-2236.837) * (-2225.546) (-2225.228) (-2233.793) [-2212.325] -- 0:01:16
922000 -- (-2223.757) [-2211.749] (-2229.537) (-2233.445) * (-2253.294) (-2236.041) (-2231.086) [-2219.910] -- 0:01:15
923000 -- [-2227.659] (-2233.438) (-2226.151) (-2229.604) * (-2235.877) (-2234.313) (-2226.416) [-2227.532] -- 0:01:14
924000 -- (-2237.960) [-2206.988] (-2225.320) (-2224.546) * (-2232.087) [-2213.355] (-2223.467) (-2233.232) -- 0:01:13
925000 -- (-2243.610) (-2220.560) (-2241.171) [-2221.109] * (-2224.715) (-2227.457) (-2229.992) [-2228.042] -- 0:01:12
Average standard deviation of split frequencies: 0.008736
926000 -- (-2229.861) (-2217.088) (-2228.179) [-2210.412] * [-2218.787] (-2232.211) (-2225.281) (-2214.336) -- 0:01:11
927000 -- (-2225.727) (-2225.476) (-2229.481) [-2211.107] * (-2233.025) (-2232.696) (-2234.095) [-2208.612] -- 0:01:10
928000 -- [-2219.729] (-2223.296) (-2239.455) (-2218.385) * (-2248.450) (-2224.175) [-2215.981] (-2220.188) -- 0:01:09
929000 -- (-2214.201) (-2225.547) (-2244.820) [-2210.741] * (-2217.068) [-2224.731] (-2233.789) (-2240.931) -- 0:01:08
930000 -- [-2208.712] (-2231.282) (-2230.679) (-2210.937) * (-2222.292) [-2215.245] (-2261.481) (-2216.134) -- 0:01:07
Average standard deviation of split frequencies: 0.008475
931000 -- (-2226.746) (-2232.724) [-2217.068] (-2227.112) * (-2220.883) (-2221.864) (-2227.877) [-2215.773] -- 0:01:06
932000 -- (-2223.496) (-2224.603) [-2213.608] (-2230.977) * (-2223.297) [-2227.840] (-2227.571) (-2243.875) -- 0:01:05
933000 -- (-2208.586) [-2225.440] (-2233.584) (-2229.575) * (-2225.213) (-2213.131) (-2214.157) [-2206.518] -- 0:01:04
934000 -- [-2221.956] (-2248.764) (-2226.456) (-2237.888) * (-2217.439) (-2222.101) (-2209.668) [-2213.335] -- 0:01:03
935000 -- (-2213.369) [-2219.844] (-2227.773) (-2232.032) * (-2230.391) (-2207.084) [-2214.041] (-2227.012) -- 0:01:02
Average standard deviation of split frequencies: 0.008472
936000 -- (-2213.677) (-2223.727) [-2223.488] (-2227.468) * (-2237.008) (-2212.542) [-2204.882] (-2222.100) -- 0:01:02
937000 -- [-2221.490] (-2226.092) (-2235.340) (-2237.490) * (-2228.325) [-2215.322] (-2217.192) (-2222.615) -- 0:01:01
938000 -- (-2218.390) (-2227.948) (-2234.267) [-2224.920] * [-2214.458] (-2227.422) (-2228.012) (-2225.813) -- 0:01:00
939000 -- (-2210.961) (-2222.454) (-2233.356) [-2224.794] * (-2237.745) (-2231.470) [-2237.739] (-2216.155) -- 0:00:59
940000 -- (-2220.278) (-2219.723) (-2235.104) [-2214.770] * (-2232.490) (-2223.972) [-2221.520] (-2220.275) -- 0:00:58
Average standard deviation of split frequencies: 0.008303
941000 -- (-2226.794) [-2212.916] (-2245.529) (-2220.388) * (-2229.441) (-2233.966) (-2238.418) [-2216.287] -- 0:00:57
942000 -- (-2238.262) (-2218.015) [-2222.714] (-2215.899) * (-2218.210) [-2215.381] (-2224.351) (-2221.850) -- 0:00:56
943000 -- (-2238.421) [-2222.800] (-2221.797) (-2215.571) * [-2208.598] (-2219.568) (-2251.814) (-2233.985) -- 0:00:55
944000 -- (-2219.167) (-2217.818) (-2228.611) [-2214.180] * (-2216.520) (-2228.780) [-2228.159] (-2251.962) -- 0:00:54
945000 -- (-2248.430) (-2218.012) [-2227.885] (-2218.615) * (-2208.954) (-2225.605) [-2226.552] (-2238.760) -- 0:00:53
Average standard deviation of split frequencies: 0.008360
946000 -- (-2220.420) (-2231.633) (-2224.708) [-2219.516] * (-2213.230) (-2229.743) (-2218.258) [-2216.459] -- 0:00:52
947000 -- (-2229.559) [-2207.880] (-2230.175) (-2234.961) * (-2229.776) (-2227.718) [-2215.185] (-2236.818) -- 0:00:51
948000 -- [-2230.366] (-2227.762) (-2246.174) (-2230.421) * (-2230.340) (-2227.576) (-2225.165) [-2217.775] -- 0:00:50
949000 -- (-2239.387) (-2229.406) (-2230.220) [-2214.312] * (-2240.773) [-2214.181] (-2227.205) (-2226.087) -- 0:00:49
950000 -- [-2221.086] (-2220.456) (-2215.842) (-2211.720) * [-2230.449] (-2220.587) (-2226.353) (-2228.735) -- 0:00:48
Average standard deviation of split frequencies: 0.008464
951000 -- (-2223.582) (-2209.887) [-2211.976] (-2234.016) * [-2221.300] (-2210.957) (-2229.726) (-2247.266) -- 0:00:47
952000 -- (-2229.376) (-2223.722) (-2224.553) [-2212.767] * (-2239.522) (-2220.506) [-2220.780] (-2237.814) -- 0:00:46
953000 -- (-2226.876) (-2222.795) [-2211.810] (-2225.846) * [-2229.691] (-2228.686) (-2236.764) (-2221.463) -- 0:00:45
954000 -- (-2219.328) [-2218.727] (-2219.322) (-2229.222) * (-2213.011) (-2218.284) (-2226.994) [-2202.435] -- 0:00:44
955000 -- [-2216.517] (-2219.089) (-2210.362) (-2248.138) * (-2223.977) [-2231.862] (-2230.699) (-2221.620) -- 0:00:43
Average standard deviation of split frequencies: 0.008485
956000 -- (-2239.541) (-2226.051) (-2211.468) [-2222.311] * (-2221.821) (-2224.149) (-2236.366) [-2212.005] -- 0:00:42
957000 -- [-2212.515] (-2230.329) (-2218.451) (-2231.894) * [-2215.992] (-2219.208) (-2212.703) (-2221.408) -- 0:00:41
958000 -- (-2226.279) (-2210.757) [-2210.602] (-2241.192) * [-2224.411] (-2229.506) (-2222.842) (-2226.491) -- 0:00:40
959000 -- (-2236.712) (-2229.777) (-2241.014) [-2210.410] * (-2231.494) (-2220.112) (-2221.127) [-2210.040] -- 0:00:39
960000 -- [-2208.987] (-2235.605) (-2233.051) (-2223.001) * (-2234.373) (-2233.968) (-2214.790) [-2214.338] -- 0:00:38
Average standard deviation of split frequencies: 0.008412
961000 -- [-2219.722] (-2231.887) (-2224.919) (-2216.250) * [-2215.075] (-2228.008) (-2245.155) (-2230.298) -- 0:00:37
962000 -- [-2227.204] (-2239.933) (-2228.865) (-2228.906) * (-2225.473) [-2216.353] (-2220.968) (-2232.637) -- 0:00:36
963000 -- [-2220.756] (-2244.545) (-2227.087) (-2214.766) * (-2237.992) (-2219.974) [-2227.366] (-2238.081) -- 0:00:35
964000 -- (-2223.808) (-2247.868) (-2241.728) [-2212.066] * (-2231.849) [-2201.379] (-2221.758) (-2251.910) -- 0:00:34
965000 -- (-2224.686) (-2224.308) (-2221.935) [-2212.143] * (-2241.350) (-2218.037) [-2220.426] (-2222.782) -- 0:00:33
Average standard deviation of split frequencies: 0.008467
966000 -- (-2221.803) (-2232.374) (-2226.565) [-2229.616] * (-2257.018) [-2216.132] (-2222.227) (-2235.914) -- 0:00:32
967000 -- (-2218.008) [-2225.238] (-2218.257) (-2242.592) * (-2226.146) (-2235.240) (-2230.122) [-2211.322] -- 0:00:31
968000 -- (-2232.097) [-2220.327] (-2219.785) (-2221.476) * [-2235.887] (-2230.452) (-2226.043) (-2223.150) -- 0:00:31
969000 -- (-2221.595) (-2219.562) (-2222.855) [-2208.433] * (-2220.230) (-2218.104) (-2225.912) [-2218.257] -- 0:00:30
970000 -- (-2234.019) (-2233.715) (-2224.039) [-2205.769] * (-2227.391) [-2221.964] (-2228.147) (-2220.021) -- 0:00:29
Average standard deviation of split frequencies: 0.008658
971000 -- (-2221.200) [-2213.713] (-2227.902) (-2214.296) * (-2230.267) (-2223.383) [-2215.216] (-2213.514) -- 0:00:28
972000 -- [-2212.607] (-2232.572) (-2222.459) (-2204.482) * (-2239.364) (-2219.458) [-2218.609] (-2225.753) -- 0:00:27
973000 -- (-2223.792) [-2213.885] (-2235.742) (-2226.201) * (-2234.400) (-2228.003) [-2211.184] (-2242.225) -- 0:00:26
974000 -- (-2218.125) (-2210.507) (-2243.061) [-2224.791] * (-2238.319) [-2208.075] (-2223.218) (-2228.868) -- 0:00:25
975000 -- [-2201.614] (-2214.749) (-2224.892) (-2235.612) * (-2225.871) (-2233.380) [-2226.439] (-2214.450) -- 0:00:24
Average standard deviation of split frequencies: 0.008519
976000 -- (-2224.455) [-2222.629] (-2225.555) (-2249.080) * (-2232.113) (-2234.182) (-2219.850) [-2205.802] -- 0:00:23
977000 -- [-2213.591] (-2211.378) (-2250.339) (-2226.440) * (-2251.885) (-2227.703) (-2224.154) [-2216.721] -- 0:00:22
978000 -- (-2223.011) [-2219.765] (-2229.342) (-2231.604) * (-2235.663) [-2209.192] (-2223.610) (-2210.570) -- 0:00:21
979000 -- [-2222.304] (-2220.151) (-2218.408) (-2226.617) * (-2248.281) (-2230.664) (-2206.927) [-2213.230] -- 0:00:20
980000 -- (-2214.431) (-2229.180) (-2220.772) [-2222.413] * (-2245.891) (-2223.054) [-2222.441] (-2226.796) -- 0:00:19
Average standard deviation of split frequencies: 0.008556
981000 -- (-2206.493) [-2225.361] (-2226.761) (-2233.815) * (-2223.963) (-2240.166) [-2221.953] (-2217.192) -- 0:00:18
982000 -- (-2225.969) (-2225.010) (-2213.788) [-2216.434] * [-2222.874] (-2232.972) (-2213.129) (-2221.092) -- 0:00:17
983000 -- (-2239.377) (-2213.656) [-2211.439] (-2234.075) * (-2230.836) (-2229.665) [-2214.036] (-2226.745) -- 0:00:16
984000 -- [-2229.734] (-2237.470) (-2236.247) (-2232.284) * (-2229.789) (-2233.649) [-2214.010] (-2221.605) -- 0:00:15
985000 -- (-2221.573) [-2225.099] (-2240.522) (-2238.048) * (-2228.269) (-2233.423) [-2213.152] (-2230.740) -- 0:00:14
Average standard deviation of split frequencies: 0.008371
986000 -- (-2241.268) [-2214.749] (-2215.868) (-2231.649) * (-2223.385) (-2254.485) [-2211.267] (-2239.076) -- 0:00:13
987000 -- (-2233.905) (-2222.675) [-2231.332] (-2244.648) * [-2214.498] (-2228.719) (-2226.371) (-2218.006) -- 0:00:12
988000 -- (-2229.513) (-2227.952) [-2207.727] (-2226.357) * [-2213.719] (-2225.648) (-2232.923) (-2222.750) -- 0:00:11
989000 -- (-2231.599) (-2227.444) [-2212.453] (-2227.227) * (-2228.741) (-2228.616) (-2223.102) [-2210.478] -- 0:00:10
990000 -- (-2228.845) (-2219.791) [-2221.326] (-2218.134) * [-2205.931] (-2231.946) (-2229.107) (-2217.310) -- 0:00:09
Average standard deviation of split frequencies: 0.008393
991000 -- (-2236.259) [-2223.784] (-2232.425) (-2235.935) * (-2227.086) [-2221.013] (-2210.155) (-2231.134) -- 0:00:08
992000 -- (-2231.320) [-2221.805] (-2239.879) (-2244.392) * (-2234.573) (-2224.644) [-2206.403] (-2218.613) -- 0:00:07
993000 -- (-2226.265) (-2227.663) [-2219.507] (-2231.449) * (-2224.271) (-2224.290) [-2231.953] (-2224.595) -- 0:00:06
994000 -- [-2219.281] (-2220.108) (-2233.119) (-2248.697) * (-2217.553) (-2240.100) [-2208.221] (-2215.608) -- 0:00:05
995000 -- [-2212.772] (-2221.979) (-2223.767) (-2240.633) * (-2225.568) [-2212.553] (-2243.313) (-2229.793) -- 0:00:04
Average standard deviation of split frequencies: 0.008315
996000 -- (-2226.272) [-2211.363] (-2223.321) (-2206.366) * (-2211.082) (-2235.365) (-2250.789) [-2220.877] -- 0:00:03
997000 -- [-2227.740] (-2224.272) (-2221.466) (-2213.901) * (-2219.045) (-2234.556) (-2242.962) [-2223.891] -- 0:00:02
998000 -- [-2215.973] (-2233.810) (-2225.117) (-2213.440) * [-2220.370] (-2229.702) (-2241.183) (-2226.435) -- 0:00:01
999000 -- (-2223.855) [-2212.159] (-2222.454) (-2216.376) * (-2215.294) (-2229.949) (-2248.231) [-2226.783] -- 0:00:00
1000000 -- (-2234.563) [-2223.425] (-2225.662) (-2226.519) * (-2217.348) [-2228.352] (-2242.701) (-2240.161) -- 0:00:00
Average standard deviation of split frequencies: 0.008447
Analysis completed in 16 mins 9 seconds
Analysis used 967.93 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -2192.50
Likelihood of best state for "cold" chain of run 2 was -2193.70
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
48.1 % ( 32 %) Dirichlet(Revmat{all})
64.8 % ( 55 %) Slider(Revmat{all})
26.4 % ( 26 %) Dirichlet(Pi{all})
28.5 % ( 25 %) Slider(Pi{all})
38.2 % ( 39 %) Multiplier(Alpha{1,2})
51.1 % ( 35 %) Multiplier(Alpha{3})
59.5 % ( 31 %) Slider(Pinvar{all})
44.7 % ( 39 %) ExtSPR(Tau{all},V{all})
36.7 % ( 38 %) ExtTBR(Tau{all},V{all})
52.2 % ( 56 %) NNI(Tau{all},V{all})
35.3 % ( 34 %) ParsSPR(Tau{all},V{all})
27.2 % ( 29 %) Multiplier(V{all})
63.4 % ( 65 %) Nodeslider(V{all})
25.3 % ( 25 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
46.6 % ( 27 %) Dirichlet(Revmat{all})
65.3 % ( 57 %) Slider(Revmat{all})
26.5 % ( 28 %) Dirichlet(Pi{all})
28.7 % ( 20 %) Slider(Pi{all})
38.0 % ( 33 %) Multiplier(Alpha{1,2})
51.2 % ( 15 %) Multiplier(Alpha{3})
60.4 % ( 34 %) Slider(Pinvar{all})
44.9 % ( 37 %) ExtSPR(Tau{all},V{all})
36.5 % ( 29 %) ExtTBR(Tau{all},V{all})
52.3 % ( 46 %) NNI(Tau{all},V{all})
35.2 % ( 35 %) ParsSPR(Tau{all},V{all})
27.3 % ( 20 %) Multiplier(V{all})
63.6 % ( 65 %) Nodeslider(V{all})
25.4 % ( 28 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.54 0.24 0.09
2 | 166895 0.57 0.28
3 | 166565 166691 0.60
4 | 166828 166306 166715
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.55 0.25 0.09
2 | 166829 0.57 0.28
3 | 167279 166570 0.60
4 | 166477 166377 166468
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -2212.93
| 2 |
|1 1 |
| 1 22 1 2 |
| 2 222 1 2 1 11 2 1 11 2 |
| 21 1 1 2 1 2 1 22 |
| 21 2221 * 1 2 1 1 2 *1 1 |
|2 1 2 1 1 1 1 2 1 1 1 *1 1|
| 2 1 21 2 ** * 1 12 2 * 2 11 2 |
| 12 1 2 2 22 12 1 2 |
| 2 2 *22 * 2 2* 2|
| 1 1 1 2 2 2 1 |
| 1 1 2 |
| |
| |
| 1 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -2222.16
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -2201.07 -2234.00
2 -2203.37 -2240.33
--------------------------------------
TOTAL -2201.67 -2239.64
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.722374 0.006013 0.581276 0.885971 0.717310 965.49 975.01 1.000
r(A<->C){all} 0.083517 0.000644 0.037871 0.133808 0.081824 739.88 797.00 1.000
r(A<->G){all} 0.179708 0.001030 0.121399 0.246706 0.177974 780.22 831.89 1.000
r(A<->T){all} 0.153406 0.000760 0.101639 0.211179 0.151782 563.45 756.63 1.000
r(C<->G){all} 0.029484 0.000266 0.000611 0.058661 0.027708 494.16 538.84 1.000
r(C<->T){all} 0.470278 0.001841 0.387270 0.555125 0.470413 486.81 619.75 1.001
r(G<->T){all} 0.083606 0.000422 0.047249 0.126850 0.082255 912.00 920.84 1.000
pi(A){all} 0.262169 0.000233 0.231899 0.292024 0.262150 834.66 1040.46 1.000
pi(C){all} 0.203610 0.000186 0.177673 0.229175 0.203384 911.73 1009.33 1.000
pi(G){all} 0.218775 0.000222 0.191313 0.248524 0.218365 946.58 972.31 1.000
pi(T){all} 0.315445 0.000256 0.284858 0.345653 0.315528 1008.10 1060.01 1.000
alpha{1,2} 0.169066 0.003277 0.054137 0.292813 0.166508 605.12 613.20 1.000
alpha{3} 2.309145 1.437202 0.607576 4.674229 2.044494 708.59 905.62 1.000
pinvar{all} 0.256067 0.010549 0.034623 0.424268 0.266987 480.35 575.74 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C10
2 -- C11
3 -- C12
4 -- C14
5 -- C15
6 -- C16
7 -- C18
8 -- C19
9 -- C2
10 -- C20
11 -- C21
12 -- C22
13 -- C23
14 -- C24
15 -- C25
16 -- C29
17 -- C31
18 -- C32
19 -- C33
20 -- C35
21 -- C38
22 -- C39
23 -- C4
24 -- C40
25 -- C41
26 -- C43
27 -- C44
28 -- C6
29 -- C8
30 -- C9
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
------------------------------------
1 -- .*****************************
2 -- .*............................
3 -- ..*...........................
4 -- ...*..........................
5 -- ....*.........................
6 -- .....*........................
7 -- ......*.......................
8 -- .......*......................
9 -- ........*.....................
10 -- .........*....................
11 -- ..........*...................
12 -- ...........*..................
13 -- ............*.................
14 -- .............*................
15 -- ..............*...............
16 -- ...............*..............
17 -- ................*.............
18 -- .................*............
19 -- ..................*...........
20 -- ...................*..........
21 -- ....................*.........
22 -- .....................*........
23 -- ......................*.......
24 -- .......................*......
25 -- ........................*.....
26 -- .........................*....
27 -- ..........................*...
28 -- ...........................*..
29 -- ............................*.
30 -- .............................*
31 -- ...............*.*............
32 -- ........*.***************..**.
33 -- ............*.*...............
34 -- ............******..**.*......
35 -- ..........************.**.....
36 -- .*******.*...............**..*
37 -- ...........*......**..........
38 -- ..........***************..**.
39 -- ..*.****.*...............**...
40 -- ..........***************.....
41 -- ..*.****.................**...
42 -- ....****.................**...
43 -- ..*.****.*...............**..*
44 -- .*.*..........................
45 -- ..******.*...............**..*
46 -- ..................**..........
47 -- ...........................**.
48 -- ...........*......*...........
49 -- ..........***************..*..
50 -- ...........*.......*..........
51 -- ..........***************...*.
52 -- .*.*.........................*
53 -- ..........************.*......
54 -- ...........***********.*......
55 -- ..........**......**....*.....
56 -- ..........*.******..**.*......
57 -- ..........*.............*.....
58 -- ...........*......**....*.....
59 -- ............******..**.**.....
60 -- ..........**......**..........
61 -- ..........*.******..**.**.....
62 -- ...........***********.**.....
63 -- ..*......*....................
64 -- .....**.......................
65 -- .......*.................*....
66 -- .......*..................*...
67 -- ......**......................
68 -- .....*...................*....
69 -- .....*.*......................
70 -- ......*..................*....
71 -- .........................**...
72 -- ....*.*.......................
73 -- ....*..*......................
74 -- ......*...................*...
75 -- .............*.*.*............
76 -- .....*....................*...
77 -- ....**........................
78 -- ................*......*......
79 -- ....*.....................*...
80 -- .....................*.*......
81 -- ............*.*........*......
82 -- ............***...............
83 -- .....***.................**...
84 -- ............*.*.....*.........
85 -- ....*....................*....
86 -- ............******...*.*......
87 -- .............*......*.........
------------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
31 3002 1.000000 0.000000 1.000000 1.000000 2
32 3002 1.000000 0.000000 1.000000 1.000000 2
33 3002 1.000000 0.000000 1.000000 1.000000 2
34 3001 0.999667 0.000471 0.999334 1.000000 2
35 3000 0.999334 0.000000 0.999334 0.999334 2
36 3000 0.999334 0.000000 0.999334 0.999334 2
37 2985 0.994337 0.003298 0.992005 0.996669 2
38 2947 0.981679 0.007066 0.976682 0.986676 2
39 2805 0.934377 0.000471 0.934044 0.934710 2
40 2794 0.930713 0.000942 0.930047 0.931379 2
41 2216 0.738175 0.032976 0.714857 0.761492 2
42 2172 0.723518 0.002827 0.721519 0.725516 2
43 1945 0.647901 0.017430 0.635576 0.660227 2
44 1653 0.550633 0.026852 0.531646 0.569620 2
45 1265 0.421386 0.026852 0.402398 0.440373 2
46 1020 0.339773 0.016959 0.327781 0.351765 2
47 1010 0.336442 0.024497 0.319121 0.353764 2
48 1001 0.333444 0.006124 0.329114 0.337775 2
49 990 0.329780 0.016017 0.318454 0.341106 2
50 980 0.326449 0.010364 0.319121 0.333777 2
51 895 0.298135 0.013662 0.288474 0.307795 2
52 778 0.259161 0.002827 0.257162 0.261159 2
53 634 0.211193 0.001884 0.209860 0.212525 2
54 627 0.208861 0.015546 0.197868 0.219853 2
55 604 0.201199 0.009422 0.194537 0.207861 2
56 603 0.200866 0.000471 0.200533 0.201199 2
57 598 0.199201 0.000000 0.199201 0.199201 2
58 596 0.198534 0.008480 0.192538 0.204530 2
59 589 0.196203 0.000471 0.195869 0.196536 2
60 587 0.195536 0.008951 0.189207 0.201865 2
61 577 0.192205 0.005182 0.188541 0.195869 2
62 575 0.191539 0.008009 0.185876 0.197202 2
63 355 0.118254 0.016488 0.106596 0.129913 2
64 330 0.109927 0.006595 0.105263 0.114590 2
65 328 0.109260 0.006595 0.104597 0.113924 2
66 325 0.108261 0.014604 0.097935 0.118588 2
67 323 0.107595 0.010835 0.099933 0.115256 2
68 321 0.106929 0.004240 0.103931 0.109927 2
69 320 0.106596 0.003769 0.103931 0.109260 2
70 319 0.106262 0.005182 0.102598 0.109927 2
71 316 0.105263 0.011306 0.097268 0.113258 2
72 310 0.103264 0.005653 0.099267 0.107262 2
73 303 0.100933 0.012719 0.091939 0.109927 2
74 303 0.100933 0.002355 0.099267 0.102598 2
75 300 0.099933 0.001884 0.098601 0.101266 2
76 300 0.099933 0.006595 0.095270 0.104597 2
77 299 0.099600 0.004240 0.096602 0.102598 2
78 295 0.098268 0.008951 0.091939 0.104597 2
79 295 0.098268 0.004240 0.095270 0.101266 2
80 293 0.097602 0.006124 0.093271 0.101932 2
81 293 0.097602 0.005182 0.093937 0.101266 2
82 293 0.097602 0.014604 0.087275 0.107928 2
83 292 0.097268 0.015075 0.086609 0.107928 2
84 287 0.095603 0.008009 0.089940 0.101266 2
85 287 0.095603 0.008951 0.089274 0.101932 2
86 285 0.094937 0.009893 0.087941 0.101932 2
87 269 0.089607 0.019315 0.075949 0.103264 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.258525 0.001763 0.178954 0.343641 0.254746 1.000 2
length{all}[2] 0.071797 0.000265 0.040956 0.103968 0.070219 1.004 2
length{all}[3] 0.003615 0.000007 0.000116 0.008677 0.003020 1.000 2
length{all}[4] 0.049510 0.000159 0.026645 0.074907 0.048280 1.000 2
length{all}[5] 0.003431 0.000006 0.000081 0.008060 0.002905 1.001 2
length{all}[6] 0.001624 0.000003 0.000000 0.005020 0.001115 1.000 2
length{all}[7] 0.001647 0.000003 0.000000 0.004897 0.001107 1.000 2
length{all}[8] 0.001706 0.000003 0.000001 0.005198 0.001155 1.001 2
length{all}[9] 0.004282 0.000014 0.000001 0.011448 0.003224 1.000 2
length{all}[10] 0.005632 0.000011 0.000459 0.011741 0.005010 1.000 2
length{all}[11] 0.001602 0.000003 0.000001 0.004944 0.001096 1.000 2
length{all}[12] 0.001648 0.000003 0.000000 0.004740 0.001148 1.000 2
length{all}[13] 0.001579 0.000003 0.000001 0.004671 0.001107 1.001 2
length{all}[14] 0.001630 0.000003 0.000001 0.004824 0.001142 1.000 2
length{all}[15] 0.001636 0.000003 0.000000 0.004836 0.001155 1.001 2
length{all}[16] 0.001601 0.000003 0.000001 0.004640 0.001133 1.000 2
length{all}[17] 0.001704 0.000003 0.000001 0.005073 0.001190 1.000 2
length{all}[18] 0.001637 0.000003 0.000000 0.004914 0.001117 1.000 2
length{all}[19] 0.003280 0.000006 0.000022 0.007873 0.002675 1.000 2
length{all}[20] 0.001660 0.000003 0.000000 0.005119 0.001159 1.000 2
length{all}[21] 0.001625 0.000003 0.000000 0.004891 0.001119 1.000 2
length{all}[22] 0.003339 0.000006 0.000137 0.007983 0.002827 1.000 2
length{all}[23] 0.001712 0.000003 0.000002 0.004860 0.001232 1.001 2
length{all}[24] 0.001627 0.000003 0.000000 0.004949 0.001157 1.000 2
length{all}[25] 0.001670 0.000003 0.000001 0.005106 0.001159 1.000 2
length{all}[26] 0.001664 0.000003 0.000000 0.005007 0.001184 1.000 2
length{all}[27] 0.003316 0.000006 0.000057 0.008163 0.002772 1.000 2
length{all}[28] 0.001590 0.000003 0.000000 0.004720 0.001093 1.000 2
length{all}[29] 0.003279 0.000006 0.000018 0.007893 0.002739 1.001 2
length{all}[30] 0.028833 0.000070 0.012742 0.044964 0.027963 1.000 2
length{all}[31] 0.006555 0.000011 0.001157 0.013125 0.005956 1.000 2
length{all}[32] 0.086133 0.000499 0.044185 0.127893 0.084707 1.000 2
length{all}[33] 0.004950 0.000008 0.000574 0.010560 0.004472 1.000 2
length{all}[34] 0.004944 0.000008 0.000552 0.010444 0.004374 1.000 2
length{all}[35] 0.004960 0.000008 0.000686 0.010510 0.004327 1.000 2
length{all}[36] 0.065939 0.000405 0.029006 0.106366 0.064344 1.000 2
length{all}[37] 0.003214 0.000005 0.000119 0.007764 0.002667 1.000 2
length{all}[38] 0.010936 0.000026 0.001598 0.020709 0.010112 1.000 2
length{all}[39] 0.011704 0.000033 0.001595 0.023210 0.010935 1.000 2
length{all}[40] 0.003223 0.000005 0.000108 0.007679 0.002672 1.000 2
length{all}[41] 0.003592 0.000007 0.000011 0.008635 0.003047 1.000 2
length{all}[42] 0.003321 0.000006 0.000015 0.007933 0.002838 1.000 2
length{all}[43] 0.010723 0.000044 0.000022 0.022531 0.009663 1.000 2
length{all}[44] 0.014512 0.000060 0.001168 0.028942 0.013643 0.999 2
length{all}[45] 0.016677 0.000083 0.000103 0.033954 0.015728 0.999 2
length{all}[46] 0.001682 0.000003 0.000002 0.004925 0.001194 0.999 2
length{all}[47] 0.001612 0.000003 0.000003 0.004747 0.001149 1.000 2
length{all}[48] 0.001702 0.000003 0.000000 0.005172 0.001156 0.999 2
length{all}[49] 0.001781 0.000003 0.000001 0.005262 0.001272 0.999 2
length{all}[50] 0.001666 0.000003 0.000002 0.005099 0.001154 1.001 2
length{all}[51] 0.001558 0.000002 0.000002 0.004584 0.001132 1.000 2
length{all}[52] 0.008747 0.000038 0.000015 0.021144 0.007641 0.999 2
length{all}[53] 0.001644 0.000003 0.000005 0.004718 0.001132 1.000 2
length{all}[54] 0.001664 0.000003 0.000003 0.005117 0.001109 1.002 2
length{all}[55] 0.001671 0.000003 0.000002 0.005457 0.001138 0.999 2
length{all}[56] 0.001693 0.000003 0.000003 0.004971 0.001172 0.999 2
length{all}[57] 0.001702 0.000003 0.000001 0.005447 0.001110 0.999 2
length{all}[58] 0.001662 0.000003 0.000004 0.005138 0.001156 0.999 2
length{all}[59] 0.001640 0.000003 0.000002 0.005047 0.001171 1.000 2
length{all}[60] 0.001566 0.000002 0.000001 0.004284 0.001089 1.001 2
length{all}[61] 0.001548 0.000003 0.000002 0.004567 0.001101 0.998 2
length{all}[62] 0.001565 0.000003 0.000002 0.004929 0.001080 0.999 2
length{all}[63] 0.002213 0.000004 0.000001 0.006153 0.001641 1.000 2
length{all}[64] 0.001663 0.000002 0.000000 0.004954 0.001146 0.999 2
length{all}[65] 0.001692 0.000003 0.000011 0.005670 0.001195 0.997 2
length{all}[66] 0.001570 0.000003 0.000002 0.004512 0.001090 1.001 2
length{all}[67] 0.001618 0.000003 0.000001 0.004639 0.001143 1.002 2
length{all}[68] 0.001653 0.000003 0.000001 0.005037 0.001055 0.997 2
length{all}[69] 0.001539 0.000003 0.000003 0.004865 0.000984 0.997 2
length{all}[70] 0.001740 0.000003 0.000005 0.005152 0.001196 0.997 2
length{all}[71] 0.001575 0.000002 0.000005 0.004536 0.001017 0.997 2
length{all}[72] 0.001774 0.000003 0.000021 0.004915 0.001348 1.009 2
length{all}[73] 0.001747 0.000003 0.000015 0.004700 0.001280 1.005 2
length{all}[74] 0.001743 0.000003 0.000001 0.005190 0.001172 1.001 2
length{all}[75] 0.001621 0.000002 0.000022 0.004684 0.001149 0.997 2
length{all}[76] 0.001786 0.000003 0.000003 0.005140 0.001293 0.997 2
length{all}[77] 0.001717 0.000003 0.000003 0.005499 0.001114 0.997 2
length{all}[78] 0.001563 0.000002 0.000008 0.004436 0.001094 1.003 2
length{all}[79] 0.001756 0.000003 0.000007 0.005234 0.001238 0.997 2
length{all}[80] 0.001605 0.000002 0.000027 0.004471 0.001159 1.015 2
length{all}[81] 0.001521 0.000002 0.000009 0.004198 0.001129 1.008 2
length{all}[82] 0.001620 0.000003 0.000008 0.004794 0.001157 0.997 2
length{all}[83] 0.001721 0.000003 0.000000 0.004795 0.001093 1.000 2
length{all}[84] 0.001586 0.000002 0.000004 0.004491 0.001140 1.018 2
length{all}[85] 0.001675 0.000002 0.000000 0.005061 0.001265 1.000 2
length{all}[86] 0.001649 0.000002 0.000004 0.004760 0.001154 0.998 2
length{all}[87] 0.001567 0.000003 0.000001 0.004672 0.001036 0.997 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.008447
Maximum standard deviation of split frequencies = 0.032976
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.018
Clade credibility values:
/---------------------------------------------------------------------- C10 (1)
|
| /------------------------------------------------------------ C2 (9)
| |
| | /------------------------------ C21 (11)
| | |
| | | /---------- C22 (12)
| | | |
| | |---------99--------+---------- C33 (19)
| | | |
| | | \---------- C35 (20)
| | |
| | | /---------- C23 (13)
| | | /---100---+
| | | | \---------- C25 (15)
| | | |
| | | |-------------------- C24 (14)
|---100---+ /---100---+ |
| | | | | /---------- C29 (16)
| | | | |---100---+
| | | | | \---------- C32 (18)
| | | |---100---+
| | | | |-------------------- C31 (17)
| | | | |
+ | | | |-------------------- C38 (21)
| | /----93---+ | |
| | | | | |-------------------- C39 (22)
| | | | | |
| | | | | \-------------------- C40 (24)
| | | | |
| | | | \------------------------------ C41 (25)
| \----98---+ |
| | \---------------------------------------- C4 (23)
| |
| |-------------------------------------------------- C6 (28)
| |
| \-------------------------------------------------- C8 (29)
|
| /---------- C11 (2)
| /-------------------55------------------+
| | \---------- C14 (4)
| |
| | /-------------------- C12 (3)
| | |
| | | /---------- C15 (5)
| | | |
| | /----74---+ |---------- C16 (6)
\--------100--------+ | | |
| | | |---------- C18 (7)
| | \----72---+
| | |---------- C19 (8)
| /----93---+ |
| | | |---------- C43 (26)
| | | |
| | | \---------- C44 (27)
\----65---+ |
| \------------------------------ C20 (10)
|
\---------------------------------------- C9 (30)
Phylogram (based on average branch lengths):
/----------------------------------------------------------------------- C10 (1)
|
| /- C2 (9)
| |
| | /- C21 (11)
| | |
| | |/ C22 (12)
| | ||
| | |+- C33 (19)
| | ||
| | |\ C35 (20)
| | |
| | | / C23 (13)
| | | /+
| | | |\ C25 (15)
| | | |
| | | | C24 (14)
|-----------------------+ /+ |
| | || |/- C29 (16)
| | || |+
| | || |\- C32 (18)
| | ||-+
| | || | C31 (17)
| | || |
+ | || | C38 (21)
| | /+| |
| | ||| | C39 (22)
| | ||| |
| | ||| \ C40 (24)
| | |||
| | ||\- C41 (25)
| \-+|
| |\- C4 (23)
| |
| |- C6 (28)
| |
| \- C8 (29)
|
| /------------------- C11 (2)
| /---+
| | \------------- C14 (4)
| |
| | / C12 (3)
| | |
| | |- C15 (5)
| | |
| | /+- C16 (6)
\-----------------+ ||
| ||- C18 (7)
| ||
| ||- C19 (8)
| /--+|
| | ||- C43 (26)
| | ||
| | |\- C44 (27)
\--+ |
| \- C20 (10)
|
\------- C9 (30)
|------------| 0.050 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3002 trees sampled):
50 % credible set contains 1501 trees
90 % credible set contains 2702 trees
95 % credible set contains 2852 trees
99 % credible set contains 2972 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Fri Nov 04 00:59:45 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.11 sec, SCORE=1000, Nseq=44, Len=234
C1 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C2 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C3 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C4 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C5 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C6 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C7 --------MTDANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C8 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C9 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C10 MGDKGVLYNNNASCN-DNIVTHLKNWNFGWNVILTIFILILQFGHYKYSR
C11 --------MSNNSIPQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C12 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C13 -------MGDNDTCN-DTIVTHLKNWNFGWNVILTIFILILQFGHYKYSR
C14 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C15 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C16 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C17 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C18 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C19 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C20 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C21 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C22 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C23 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C24 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C25 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C26 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C27 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C28 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C29 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C30 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C31 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C32 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C33 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C34 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C35 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C36 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C37 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C38 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C39 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C40 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C41 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C42 --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSR
C43 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
C44 --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSR
: . :*********.**:******:***********
C1 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C2 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFFMAVSTLVMW
C3 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C4 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C5 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVIW
C6 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C7 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C8 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C9 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVALSLFMAVSTLIMW
C10 IFYGIKMLVLWLLWPLVLALSIFDTYANWNENWAFVALSLFMAIATLIMW
C11 VFYGLKMLVLWLLWPLVLALSIFDTWANWGTNWAFVAFSLFMAVSTLIMW
C12 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C13 IFYGVKMLVLWLLWPLVLALSIFDTYANWNENWAFVALSLFMAIATFVMW
C14 IFYGLKMLILWLLWPLVLALSIFDSWANWGSNWAFVAFSLFMAVSTLIMW
C15 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C16 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C17 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C18 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C19 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C20 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C21 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C22 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C23 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C24 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C25 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C26 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C27 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C28 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C29 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C30 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C31 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C32 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C33 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C34 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C35 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C36 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C37 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C38 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C39 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C40 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C41 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C42 LFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMW
C43 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
C44 IFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMW
:***:***:***************::***. ******:*::**::*:::*
C1 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C2 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C3 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C4 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C5 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C6 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C7 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C8 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C9 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C10 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPTLQAPTGITV
C11 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPTQQAPTGITV
C12 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C13 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPTQQAPTGITV
C14 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C15 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C16 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C17 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C18 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C19 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C20 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C21 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C22 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C23 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C24 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C25 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C26 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C27 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C28 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C29 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C30 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C31 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C32 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C33 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C34 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C35 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C36 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C37 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C38 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C39 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C40 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C41 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C42 VMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C43 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
C44 VMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITV
****.*********************************** ********
C1 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C2 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C3 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C4 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C5 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C6 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C7 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSRNS
C8 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C9 TLLSGVLYVDGHRLASGVQVQNLPEYMTVAVPSTTIIYSRVGRSVNSRNS
C10 TLLSGVLYVDGHRIASGIQVHNLPEYMSVAVPSTTIIYSRVGRSVNSRNN
C11 TLLSGVLYVDGHRLASGIQVHNLPEYMSVAVPSTTIIYSRVGRSVNSRNS
C12 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C13 TLLSGVLYVDGHRIASGIQVHNLPEYMSVAVPSTTIIYSRVGRSVNSRNN
C14 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSRNS
C15 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C16 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C17 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C18 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C19 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C20 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSRNS
C21 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C22 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C23 TLLSGVLYVDGHRLASGVQVHNLPEYMAVAVPSTTIIYSRVGRSVNSQNS
C24 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C25 TLLSGVLYVDGHRLASGVQVHNLPEYMAVAVPSTTIIYSRVGRSVNSQNS
C26 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C27 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C28 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C29 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C30 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C31 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C32 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C33 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C34 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C35 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C36 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C37 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C38 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C39 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C40 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C41 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C42 TLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNS
C43 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
C44 TLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNS
*************:***:**:****:*:*******************:*.
C1 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C2 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C3 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C4 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C5 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C6 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C7 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C8 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C9 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C10 TGWMFYVRVKHGDFSAVSSPQSNMTENERLLHLV
C11 TGWVFYVRVKHGDFSAVSSPTSNMSENERLLHLI
C12 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C13 TGWMFYVRVKHGDFSAVSSPQSNMTENERLLHLV
C14 TGWVFYVRVKHGDFSAVSSPQSNMSENERLLHLI
C15 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C16 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C17 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C18 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C19 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C20 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C21 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C22 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C23 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C24 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C25 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C26 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C27 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C28 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C29 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C30 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C31 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C32 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C33 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C34 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C35 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C36 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C37 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C38 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C39 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C40 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C41 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C42 TGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
C43 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
C44 TGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
***:**************** ***:*******:.
-- Starting log on Fri Nov 04 04:51:23 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E.result/original_alignment/codeml,229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C8 702 sites
reading seq# 2 C14 702 sites
reading seq# 3 C44 702 sites
reading seq# 4 C6 702 sites
reading seq# 5 C35 702 sites
reading seq# 6 C20 702 sites
reading seq# 7 C16 702 sites
reading seq# 8 C23 702 sites
reading seq# 9 C21 702 sites
reading seq#10 C33 702 sites
reading seq#11 C12 702 sites
reading seq#12 C9 702 sites
reading seq#13 C38 702 sites
reading seq#14 C15 702 sites
reading seq#15 C25 702 sites
reading seq#16 C41 702 sites
reading seq#17 C4 702 sites
reading seq#18 C29 702 sites
reading seq#19 C22 702 sites
reading seq#20 C19 702 sites
reading seq#21 C2 702 sites
reading seq#22 C10 702 sites
reading seq#23 C11 702 sites
reading seq#24 C43 702 sites
reading seq#25 C39 702 sites
reading seq#26 C24 702 sites
reading seq#27 C18 702 sites
reading seq#28 C31 702 sites
reading seq#29 C32 702 sites
reading seq#30 C40 702 sitesns = 30 ls = 702
Reading sequences, sequential format..
Reading seq # 1: C8
Reading seq # 2: C14
Reading seq # 3: C44
Reading seq # 4: C6
Reading seq # 5: C35
Reading seq # 6: C20
Reading seq # 7: C16
Reading seq # 8: C23
Reading seq # 9: C21
Reading seq #10: C33
Reading seq #11: C12
Reading seq #12: C9
Reading seq #13: C38
Reading seq #14: C15
Reading seq #15: C25
Reading seq #16: C41
Reading seq #17: C4
Reading seq #18: C29
Reading seq #19: C22
Reading seq #20: C19
Reading seq #21: C2
Reading seq #22: C10
Reading seq #23: C11
Reading seq #24: C43
Reading seq #25: C39
Reading seq #26: C24
Reading seq #27: C18
Reading seq #28: C31
Reading seq #29: C32
Reading seq #30: C40
Sites with gaps or missing data are removed.
27 ambiguity characters in seq. 1
24 ambiguity characters in seq. 2
24 ambiguity characters in seq. 3
27 ambiguity characters in seq. 4
27 ambiguity characters in seq. 5
24 ambiguity characters in seq. 6
24 ambiguity characters in seq. 7
27 ambiguity characters in seq. 8
27 ambiguity characters in seq. 9
27 ambiguity characters in seq. 10
24 ambiguity characters in seq. 11
24 ambiguity characters in seq. 12
27 ambiguity characters in seq. 13
24 ambiguity characters in seq. 14
27 ambiguity characters in seq. 15
27 ambiguity characters in seq. 16
27 ambiguity characters in seq. 17
27 ambiguity characters in seq. 18
27 ambiguity characters in seq. 19
24 ambiguity characters in seq. 20
27 ambiguity characters in seq. 21
3 ambiguity characters in seq. 22
24 ambiguity characters in seq. 23
24 ambiguity characters in seq. 24
27 ambiguity characters in seq. 25
27 ambiguity characters in seq. 26
24 ambiguity characters in seq. 27
27 ambiguity characters in seq. 28
27 ambiguity characters in seq. 29
27 ambiguity characters in seq. 30
9 sites are removed. 1 2 3 4 5 6 7 8 16
Sequences read..
Counting site patterns.. 0:00
Compressing, 174 patterns at 225 / 225 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 174 patterns at 225 / 225 sites (100.0%), 0:00
Counting codons..
3480 bytes for distance
169824 bytes for conP
15312 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(22, (21, (((9, (19, 10, 5), ((8, 15), 26, (18, 29), 28, 13, 25, 30), 16), 17), 4, 1)), ((23, 2), (((11, (14, 7, 27, 20, 24, 3)), 6), 12))); MP score: 235
1273680 bytes for conP, adjusted
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
33
0.055134 0.091584 0.019900 0.097184 0.034239 0.068102 0.079608 0.044147 0.100601 0.049149 0.018086 0.077526 0.090798 0.012957 0.039851 0.098938 0.059480 0.077759 0.051699 0.032307 0.061136 0.047830 0.017848 0.052089 0.039165 0.035991 0.065376 0.096538 0.026975 0.023510 0.032144 0.064487 0.040769 0.093355 0.024376 0.069043 0.018731 0.047710 0.026108 0.096670 0.036272 0.095721 0.077668 0.095073 0.300000 0.868192 0.411891
ntime & nrate & np: 44 2 47
Bounds (np=47):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 14.044057
np = 47
lnL0 = -2790.988989
Iterating by ming2
Initial: fx= 2790.988989
x= 0.05513 0.09158 0.01990 0.09718 0.03424 0.06810 0.07961 0.04415 0.10060 0.04915 0.01809 0.07753 0.09080 0.01296 0.03985 0.09894 0.05948 0.07776 0.05170 0.03231 0.06114 0.04783 0.01785 0.05209 0.03917 0.03599 0.06538 0.09654 0.02697 0.02351 0.03214 0.06449 0.04077 0.09335 0.02438 0.06904 0.01873 0.04771 0.02611 0.09667 0.03627 0.09572 0.07767 0.09507 0.30000 0.86819 0.41189
1 h-m-p 0.0000 0.0001 2197.3086 ++ 2593.219035 m 0.0001 52 | 1/47
2 h-m-p 0.0000 0.0000 1686.7244 ++ 2559.883529 m 0.0000 102 | 2/47
3 h-m-p 0.0000 0.0000 8229.2287 ++ 2558.506506 m 0.0000 152 | 3/47
4 h-m-p 0.0000 0.0000 26461.2022 ++ 2517.481114 m 0.0000 202 | 4/47
5 h-m-p 0.0000 0.0000 3108767.7655 ++ 2487.417678 m 0.0000 252 | 5/47
6 h-m-p 0.0000 0.0000 45763.9816 ++ 2470.770003 m 0.0000 302 | 6/47
7 h-m-p 0.0000 0.0000 35547.0044 ++ 2469.638082 m 0.0000 352 | 7/47
8 h-m-p 0.0000 0.0000 38817.2628 ++ 2458.304415 m 0.0000 402 | 8/47
9 h-m-p 0.0000 0.0000 38722.2939 ++ 2456.279715 m 0.0000 452 | 9/47
10 h-m-p 0.0000 0.0000 41886.1633 ++ 2429.204846 m 0.0000 502 | 10/47
11 h-m-p 0.0000 0.0000 66327.4328 ++ 2416.668340 m 0.0000 552 | 11/47
12 h-m-p 0.0000 0.0000 20860.9350 ++ 2414.985042 m 0.0000 602 | 12/47
13 h-m-p 0.0000 0.0000 20321.0568 ++ 2391.657153 m 0.0000 652 | 13/47
14 h-m-p 0.0000 0.0000 12018.6214 ++ 2353.880556 m 0.0000 702 | 14/47
15 h-m-p 0.0000 0.0000 6727.4045 ++ 2349.759475 m 0.0000 752 | 15/47
16 h-m-p 0.0000 0.0000 6378.4649 ++ 2321.598326 m 0.0000 802 | 16/47
17 h-m-p 0.0000 0.0000 3741.0912 ++ 2317.690443 m 0.0000 852 | 17/47
18 h-m-p 0.0000 0.0000 3969.2121 ++ 2315.756941 m 0.0000 902 | 18/47
19 h-m-p 0.0000 0.0000 1302.4541 +CYCYCCC 2300.187374 6 0.0000 963 | 18/47
20 h-m-p 0.0000 0.0000 1394.5167 +YYCCYYC 2291.899755 6 0.0000 1023 | 18/47
21 h-m-p 0.0000 0.0000 1772.0930 +YYYYYC 2288.016798 5 0.0000 1079 | 18/47
22 h-m-p 0.0000 0.0000 810.9760 +YYYCCC 2285.909655 5 0.0000 1137 | 18/47
23 h-m-p 0.0000 0.0000 3824.9057 +YYCYC 2283.275745 4 0.0000 1193 | 18/47
24 h-m-p 0.0000 0.0000 1744.2551 +YYYYCYCCC 2279.978526 8 0.0000 1255 | 18/47
25 h-m-p 0.0000 0.0001 568.3223 +YYCYYCCC 2267.893777 7 0.0001 1316 | 18/47
26 h-m-p 0.0000 0.0000 7135.1320 +YYYYCC 2258.376970 5 0.0000 1373 | 18/47
27 h-m-p 0.0000 0.0001 281.4630 YCYCCC 2257.186290 5 0.0000 1431 | 18/47
28 h-m-p 0.0000 0.0001 234.5827 +YYCCCC 2255.009431 5 0.0001 1490 | 18/47
29 h-m-p 0.0000 0.0001 1586.2048 +YYYCCCC 2245.542687 6 0.0000 1550 | 18/47
30 h-m-p 0.0001 0.0006 63.9645 YCCCC 2243.695858 4 0.0003 1607 | 18/47
31 h-m-p 0.0003 0.0019 59.3720 CCCC 2240.656075 3 0.0005 1663 | 18/47
32 h-m-p 0.0002 0.0010 88.7770 YCCC 2237.563009 3 0.0004 1718 | 18/47
33 h-m-p 0.0003 0.0013 67.9406 YCCCC 2234.604324 4 0.0006 1775 | 18/47
34 h-m-p 0.0001 0.0006 108.1390 +YCCC 2232.938739 3 0.0003 1831 | 18/47
35 h-m-p 0.0004 0.0021 25.8693 +YYCCC 2230.152545 4 0.0014 1888 | 18/47
36 h-m-p 0.0007 0.0033 45.7868 CCCC 2229.149450 3 0.0007 1944 | 18/47
37 h-m-p 0.0014 0.0191 24.7460 YCCC 2227.057062 3 0.0024 1999 | 18/47
38 h-m-p 0.0016 0.0079 12.8679 +CYYCYCCC 2212.263468 7 0.0073 2061 | 18/47
39 h-m-p 0.0006 0.0031 44.5701 YCCCC 2207.835881 4 0.0013 2118 | 18/47
40 h-m-p 0.0087 0.0433 1.0691 +YCYYCYCYC 2196.565134 8 0.0403 2181 | 18/47
41 h-m-p 0.0104 0.0521 1.2760 +YYYYCYCCC 2183.041347 8 0.0438 2243 | 18/47
42 h-m-p 0.0147 0.0735 1.3445 +CYYCC 2169.368978 4 0.0643 2300 | 18/47
43 h-m-p 0.0020 0.0101 0.8513 ++ 2167.868686 m 0.0101 2350 | 18/47
44 h-m-p 0.0148 0.1592 0.5818 +YCYCCC 2156.185802 5 0.1405 2439 | 18/47
45 h-m-p 0.0703 0.3513 0.6789 +YYCCCCC 2129.495335 6 0.3345 2530 | 18/47
46 h-m-p 0.1034 0.7221 2.1965 YYCCC 2117.845611 4 0.1429 2615 | 18/47
47 h-m-p 0.0197 0.0983 0.8989 +YYYCCC 2113.471668 5 0.0743 2673 | 18/47
48 h-m-p 0.2070 2.0401 0.3228 +CCCC 2101.185559 3 0.9933 2759 | 18/47
49 h-m-p 0.0831 0.4154 0.2526 +YYCCC 2097.609355 4 0.2693 2845 | 18/47
50 h-m-p 0.0165 0.0827 0.6188 +YYYC 2095.413813 3 0.0609 2928 | 18/47
51 h-m-p 0.0520 0.2598 0.3363 ++ 2091.266872 m 0.2598 3007 | 18/47
52 h-m-p 0.0000 0.0000 0.3265
h-m-p: 7.26751546e-18 3.63375773e-17 3.26500051e-01 2091.266872
.. | 18/47
53 h-m-p 0.0000 0.0001 371.2684 +YYC 2089.401120 2 0.0000 3165 | 18/47
54 h-m-p 0.0000 0.0001 227.2373 +YCYCCC 2088.611330 5 0.0000 3224 | 18/47
55 h-m-p 0.0001 0.0004 112.8709 CYC 2088.312642 2 0.0001 3277 | 18/47
56 h-m-p 0.0000 0.0001 196.1392 +CCC 2087.844014 2 0.0001 3332 | 18/47
57 h-m-p 0.0000 0.0000 241.2677 ++ 2087.382801 m 0.0000 3382 | 18/47
58 h-m-p 0.0000 0.0003 333.7973 +YYYYYCCC 2086.278884 7 0.0001 3442 | 18/47
59 h-m-p 0.0000 0.0002 457.7923 YCCCC 2085.450812 4 0.0001 3499 | 18/47
60 h-m-p 0.0001 0.0003 490.7997 CCCC 2084.544486 3 0.0001 3555 | 18/47
61 h-m-p 0.0001 0.0006 148.0260 YCCC 2084.403682 3 0.0000 3610 | 18/47
62 h-m-p 0.0001 0.0005 131.6668 YC 2084.084441 1 0.0001 3661 | 18/47
63 h-m-p 0.0001 0.0004 218.7719 YCC 2083.881893 2 0.0001 3714 | 18/47
64 h-m-p 0.0001 0.0004 117.9777 CCC 2083.746831 2 0.0001 3768 | 18/47
65 h-m-p 0.0001 0.0006 111.4520 CYC 2083.643286 2 0.0001 3821 | 18/47
66 h-m-p 0.0001 0.0005 105.1844 C 2083.554286 0 0.0001 3871 | 18/47
67 h-m-p 0.0000 0.0002 151.6695 YCC 2083.442168 2 0.0001 3924 | 18/47
68 h-m-p 0.0001 0.0003 83.1265 YC 2083.408851 1 0.0000 3975 | 18/47
69 h-m-p 0.0001 0.0012 56.1602 YC 2083.362871 1 0.0001 4026 | 18/47
70 h-m-p 0.0001 0.0007 83.3407 YC 2083.332586 1 0.0001 4077 | 18/47
71 h-m-p 0.0002 0.0017 21.0720 YC 2083.323442 1 0.0001 4128 | 18/47
72 h-m-p 0.0000 0.0026 38.8556 +CC 2083.287582 1 0.0002 4181 | 18/47
73 h-m-p 0.0001 0.0010 56.9402 C 2083.279931 0 0.0000 4231 | 18/47
74 h-m-p 0.0001 0.0047 17.7431 CC 2083.270335 1 0.0002 4283 | 18/47
75 h-m-p 0.0000 0.0002 30.1662 YC 2083.262633 1 0.0001 4334 | 18/47
76 h-m-p 0.0002 0.0016 12.6517 +YC 2083.242988 1 0.0006 4386 | 18/47
77 h-m-p 0.0001 0.0017 143.9510 YC 2083.201723 1 0.0001 4437 | 18/47
78 h-m-p 0.0010 0.0116 18.3053 +CCC 2083.077422 2 0.0032 4492 | 18/47
79 h-m-p 0.0011 0.0077 54.4107 CCC 2082.927223 2 0.0013 4546 | 18/47
80 h-m-p 0.0014 0.0233 52.5390 C 2082.785073 0 0.0014 4596 | 18/47
81 h-m-p 0.0049 0.0550 14.4969 YC 2082.688808 1 0.0037 4647 | 18/47
82 h-m-p 0.2570 1.2851 0.0504 +YCCC 2082.106626 3 0.8273 4703 | 18/47
83 h-m-p 1.6000 8.0000 0.0226 YCCC 2082.044543 3 0.6526 4787 | 18/47
84 h-m-p 1.3809 8.0000 0.0107 YC 2082.031853 1 0.9365 4867 | 18/47
85 h-m-p 1.6000 8.0000 0.0015 YC 2082.031110 1 0.8790 4947 | 18/47
86 h-m-p 1.6000 8.0000 0.0001 Y 2082.031070 0 0.9507 5026 | 18/47
87 h-m-p 1.6000 8.0000 0.0001 Y 2082.031067 0 1.2304 5105 | 18/47
88 h-m-p 1.6000 8.0000 0.0000 Y 2082.031067 0 0.9338 5184 | 18/47
89 h-m-p 1.6000 8.0000 0.0000 C 2082.031067 0 0.5744 5263 | 18/47
90 h-m-p 1.6000 8.0000 0.0000 C 2082.031067 0 0.3334 5342 | 18/47
91 h-m-p 0.5669 8.0000 0.0000 C 2082.031067 0 0.1417 5421 | 18/47
92 h-m-p 0.1882 8.0000 0.0000 Y 2082.031067 0 0.1882 5500 | 18/47
93 h-m-p 0.1958 8.0000 0.0000 ---------------.. | 18/47
94 h-m-p 0.0044 2.2038 0.0046 ------------ | 18/47
95 h-m-p 0.0044 2.2038 0.0046 ------------
Out..
lnL = -2082.031067
5771 lfun, 17313 eigenQcodon, 507848 P(t)
end of tree file.
Time used: 3:29
Model 2: PositiveSelection
TREE # 1
(22, (21, (((9, (19, 10, 5), ((8, 15), 26, (18, 29), 28, 13, 25, 30), 16), 17), 4, 1)), ((23, 2), (((11, (14, 7, 27, 20, 24, 3)), 6), 12))); MP score: 235
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
33
0.015394 0.088323 0.014422 0.024502 0.039767 0.092679 0.033065 0.074747 0.054150 0.081515 0.095380 0.049579 0.091319 0.022823 0.082441 0.032143 0.019978 0.087695 0.014123 0.075985 0.098438 0.103250 0.028129 0.090537 0.017650 0.098431 0.072586 0.084331 0.050790 0.066103 0.016901 0.026851 0.101564 0.039907 0.060568 0.064989 0.018434 0.059290 0.094615 0.105014 0.016956 0.071160 0.045372 0.046019 2.080529 0.974012 0.507997 0.480994 1.340984
ntime & nrate & np: 44 3 49
Bounds (np=49):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 5.404728
np = 49
lnL0 = -2809.086910
Iterating by ming2
Initial: fx= 2809.086910
x= 0.01539 0.08832 0.01442 0.02450 0.03977 0.09268 0.03306 0.07475 0.05415 0.08152 0.09538 0.04958 0.09132 0.02282 0.08244 0.03214 0.01998 0.08769 0.01412 0.07598 0.09844 0.10325 0.02813 0.09054 0.01765 0.09843 0.07259 0.08433 0.05079 0.06610 0.01690 0.02685 0.10156 0.03991 0.06057 0.06499 0.01843 0.05929 0.09462 0.10501 0.01696 0.07116 0.04537 0.04602 2.08053 0.97401 0.50800 0.48099 1.34098
1 h-m-p 0.0000 0.0001 4499.0128 ++ 2500.559276 m 0.0001 103 | 1/49
2 h-m-p 0.0000 0.0000 1084.8731 ++ 2485.159199 m 0.0000 204 | 2/49
3 h-m-p 0.0000 0.0000 14357.3969 ++ 2481.553853 m 0.0000 304 | 3/49
4 h-m-p 0.0000 0.0000 47682.9184 ++ 2458.621060 m 0.0000 403 | 4/49
5 h-m-p 0.0000 0.0000 103238.9650 ++ 2435.351590 m 0.0000 501 | 5/49
6 h-m-p 0.0000 0.0000 5331.5769 ++ 2418.548934 m 0.0000 598 | 6/49
7 h-m-p 0.0000 0.0000 6281.4030 ++ 2415.036374 m 0.0000 694 | 7/49
8 h-m-p 0.0000 0.0000 5184.7735 ++ 2351.543225 m 0.0000 789 | 8/49
9 h-m-p 0.0000 0.0000 6453.5248 ++ 2338.239340 m 0.0000 883 | 9/49
10 h-m-p 0.0000 0.0000 5277.1819 ++ 2300.638008 m 0.0000 976 | 10/49
11 h-m-p 0.0000 0.0000 34211.4357 ++ 2285.014707 m 0.0000 1068 | 11/49
12 h-m-p 0.0000 0.0000 52270.1822 ++ 2277.627486 m 0.0000 1159 | 12/49
13 h-m-p 0.0000 0.0000 1597.8919 ++ 2272.979601 m 0.0000 1249 | 13/49
14 h-m-p 0.0000 0.0000 5602.2762 ++ 2268.287869 m 0.0000 1338 | 14/49
15 h-m-p 0.0000 0.0000 22450.9012 ++ 2266.926473 m 0.0000 1426 | 15/49
16 h-m-p 0.0000 0.0000 18762.0397 ++ 2264.189273 m 0.0000 1513 | 16/49
17 h-m-p 0.0000 0.0000 1058.3928 ++ 2261.149551 m 0.0000 1599 | 17/49
18 h-m-p 0.0000 0.0000 1736.3998 ++ 2254.439003 m 0.0000 1684 | 18/49
19 h-m-p 0.0000 0.0000 5268.6028 ++ 2227.754917 m 0.0000 1768 | 18/49
20 h-m-p 0.0000 0.0000 3343.9242 +YYYCYCYC 2222.816514 7 0.0000 1862 | 18/49
21 h-m-p 0.0000 0.0000 1764.6356 +YYYYCYCCC 2213.617043 8 0.0000 1957 | 18/49
22 h-m-p 0.0000 0.0000 978.6077 +YYCYC 2210.949761 4 0.0000 2046 | 18/49
23 h-m-p 0.0000 0.0000 1440.8005 +YYCYC 2208.324614 4 0.0000 2135 | 18/49
24 h-m-p 0.0000 0.0000 538.5627 YCYCCC 2207.536521 5 0.0000 2226 | 18/49
25 h-m-p 0.0000 0.0000 355.9444 YCYCCC 2206.938792 5 0.0000 2317 | 18/49
26 h-m-p 0.0000 0.0001 279.0866 +YYYCCC 2205.103364 5 0.0001 2408 | 18/49
27 h-m-p 0.0000 0.0000 2442.7813 ++ 2198.442011 m 0.0000 2491 | 18/49
28 h-m-p -0.0000 -0.0000 135.6341
h-m-p: -3.57985904e-21 -1.78992952e-20 1.35634062e+02 2198.442011
.. | 18/49
29 h-m-p 0.0000 0.0001 1066.7472 +YYCCC 2190.217792 4 0.0001 2661 | 18/49
30 h-m-p 0.0000 0.0002 535.0011 +CYCYYYC 2163.383154 6 0.0002 2753 | 18/49
31 h-m-p 0.0000 0.0000 1852.9603 +CYCCC 2158.951184 4 0.0000 2844 | 18/49
32 h-m-p 0.0000 0.0000 17734.6377 ++ 2157.932208 m 0.0000 2927 | 18/49
33 h-m-p -0.0000 -0.0000 1288.0642
h-m-p: -5.87111759e-23 -2.93555879e-22 1.28806417e+03 2157.932208
.. | 18/49
34 h-m-p 0.0000 0.0001 2260.6987 CYCYCCC 2155.758964 6 0.0000 3100 | 18/49
35 h-m-p 0.0000 0.0001 407.2626 +CYYYCYCCC 2146.666532 8 0.0001 3196 | 18/49
36 h-m-p 0.0000 0.0001 1052.3364 +YCYCCC 2136.557536 5 0.0001 3289 | 18/49
37 h-m-p 0.0000 0.0000 612.2539 ++ 2135.679034 m 0.0000 3372 | 19/49
38 h-m-p 0.0000 0.0001 1456.3826 +YYYYC 2130.378351 4 0.0000 3460 | 19/49
39 h-m-p 0.0000 0.0000 1585.7958 CYCC 2129.237420 3 0.0000 3547 | 19/49
40 h-m-p 0.0000 0.0003 609.9892 YYCCC 2127.318687 4 0.0001 3635 | 19/49
41 h-m-p 0.0001 0.0003 404.8149 +YYCCC 2123.330639 4 0.0002 3724 | 19/49
42 h-m-p 0.0000 0.0002 482.9911 YCCCC 2121.761506 4 0.0001 3813 | 19/49
43 h-m-p 0.0000 0.0001 567.3882 YCYCCC 2120.934371 5 0.0000 3903 | 19/49
44 h-m-p 0.0000 0.0001 449.1950 YCCCC 2119.761180 4 0.0001 3992 | 19/49
45 h-m-p 0.0000 0.0001 316.3602 +YCCC 2118.880109 3 0.0001 4080 | 19/49
46 h-m-p 0.0000 0.0002 417.5267 +YCYCC 2117.040927 4 0.0001 4169 | 19/49
47 h-m-p 0.0002 0.0010 212.4700 YCCCC 2114.052707 4 0.0005 4258 | 19/49
48 h-m-p 0.0001 0.0003 401.6999 YCCC 2112.618160 3 0.0001 4345 | 19/49
49 h-m-p 0.0001 0.0003 470.7258 +YYCCC 2110.317315 4 0.0002 4434 | 19/49
50 h-m-p 0.0001 0.0007 121.5568 YCCC 2109.604543 3 0.0003 4521 | 19/49
51 h-m-p 0.0000 0.0001 498.4709 ++ 2108.608682 m 0.0001 4603 | 20/49
52 h-m-p 0.0001 0.0007 145.7344 YCYCCC 2107.612497 5 0.0003 4693 | 20/49
53 h-m-p 0.0002 0.0012 148.3346 +YCCC 2105.956489 3 0.0007 4780 | 20/49
54 h-m-p 0.0002 0.0012 145.6934 +YYCCC 2104.149651 4 0.0008 4868 | 19/49
55 h-m-p 0.0002 0.0009 748.3385 CYC 2102.486441 2 0.0002 4952 | 19/49
56 h-m-p 0.0001 0.0003 672.4604 +YCCC 2101.042909 3 0.0002 5040 | 19/49
57 h-m-p 0.0005 0.0027 168.1063 CCCC 2100.176477 3 0.0004 5128 | 19/49
58 h-m-p 0.0009 0.0047 54.3090 CCC 2099.618932 2 0.0010 5214 | 19/49
59 h-m-p 0.0006 0.0031 76.6928 CCC 2099.079015 2 0.0007 5300 | 19/49
60 h-m-p 0.0023 0.0115 13.1398 YCCC 2098.957061 3 0.0012 5387 | 19/49
61 h-m-p 0.0017 0.0280 8.9001 YC 2098.713849 1 0.0035 5470 | 19/49
62 h-m-p 0.0033 0.0269 9.2430 YC 2098.622169 1 0.0016 5553 | 19/49
63 h-m-p 0.0025 0.1841 5.9724 ++YCYCCC 2092.216726 5 0.1068 5645 | 19/49
64 h-m-p 0.0409 0.2046 4.1134 +YCCCC 2089.372905 4 0.1220 5735 | 19/49
65 h-m-p 0.0329 0.1644 1.5067 +YYCCC 2087.138424 4 0.1183 5824 | 19/49
66 h-m-p 0.0087 0.0434 2.3340 ++ 2085.560442 m 0.0434 5906 | 19/49
67 h-m-p 0.0000 0.0000 0.5113
h-m-p: 4.15631442e-18 2.07815721e-17 5.11297478e-01 2085.560442
.. | 19/49
68 h-m-p 0.0000 0.0001 384.5791 YCCC 2084.316483 3 0.0000 6072 | 19/49
69 h-m-p 0.0000 0.0001 175.8230 YCCCC 2083.791399 4 0.0000 6161 | 19/49
70 h-m-p 0.0001 0.0004 106.5293 CCC 2083.582346 2 0.0001 6247 | 19/49
71 h-m-p 0.0000 0.0001 72.6223 +YC 2083.423212 1 0.0001 6331 | 19/49
72 h-m-p 0.0001 0.0014 51.6326 YCC 2083.351830 2 0.0001 6416 | 19/49
73 h-m-p 0.0001 0.0008 68.4833 CC 2083.263982 1 0.0001 6500 | 19/49
74 h-m-p 0.0000 0.0001 122.8929 ++ 2083.148021 m 0.0001 6582 | 19/49
75 h-m-p 0.0001 0.0007 106.1873 CYC 2083.049877 2 0.0001 6667 | 19/49
76 h-m-p 0.0001 0.0006 65.0319 YC 2083.015347 1 0.0001 6750 | 19/49
77 h-m-p 0.0000 0.0014 88.8542 +CC 2082.897565 1 0.0002 6835 | 19/49
78 h-m-p 0.0001 0.0005 131.9916 YCC 2082.855536 2 0.0000 6920 | 19/49
79 h-m-p 0.0001 0.0021 47.6123 CCC 2082.813966 2 0.0001 7006 | 19/49
80 h-m-p 0.0001 0.0003 65.1285 CCC 2082.777823 2 0.0001 7092 | 19/49
81 h-m-p 0.0000 0.0001 117.0125 +C 2082.729214 0 0.0001 7175 | 19/49
82 h-m-p 0.0001 0.0003 76.1151 YC 2082.678048 1 0.0001 7258 | 19/49
83 h-m-p 0.0001 0.0007 143.9317 YC 2082.593475 1 0.0001 7341 | 19/49
84 h-m-p 0.0001 0.0006 288.7236 CC 2082.482865 1 0.0001 7425 | 19/49
85 h-m-p 0.0001 0.0007 47.5129 YC 2082.470673 1 0.0001 7508 | 19/49
86 h-m-p 0.0001 0.0023 54.5934 +YCC 2082.434858 2 0.0002 7594 | 19/49
87 h-m-p 0.0003 0.0016 28.2938 CC 2082.424874 1 0.0001 7678 | 19/49
88 h-m-p 0.0001 0.0011 32.4608 YC 2082.409047 1 0.0002 7761 | 19/49
89 h-m-p 0.0000 0.0002 100.6995 CCC 2082.391215 2 0.0001 7847 | 19/49
90 h-m-p 0.0008 0.0723 7.1195 YC 2082.372031 1 0.0014 7930 | 19/49
91 h-m-p 0.0001 0.0022 134.0480 YC 2082.327531 1 0.0002 8013 | 19/49
92 h-m-p 0.0009 0.0204 25.5632 YCC 2082.321308 2 0.0001 8098 | 19/49
93 h-m-p 0.0000 0.0043 113.8726 ++CC 2082.216820 1 0.0005 8184 | 19/49
94 h-m-p 0.0009 0.0064 64.7061 CCC 2082.097723 2 0.0011 8270 | 19/49
95 h-m-p 0.0043 0.0216 2.7395 CC 2082.087880 1 0.0037 8354 | 19/49
96 h-m-p 0.1538 5.1063 0.0658 +CCC 2082.050926 2 0.7526 8441 | 19/49
97 h-m-p 0.1497 1.2006 0.3306 YC 2082.033796 1 0.1223 8524 | 19/49
98 h-m-p 1.6000 8.0000 0.0029 YC 2082.031173 1 1.0766 8607 | 19/49
99 h-m-p 1.6000 8.0000 0.0010 YC 2082.031071 1 0.9136 8690 | 19/49
100 h-m-p 1.6000 8.0000 0.0003 Y 2082.031067 0 0.9935 8772 | 19/49
101 h-m-p 1.6000 8.0000 0.0000 Y 2082.031067 0 0.9446 8854 | 19/49
102 h-m-p 1.6000 8.0000 0.0000 Y 2082.031067 0 1.1180 8936 | 19/49
103 h-m-p 1.6000 8.0000 0.0000 --Y 2082.031067 0 0.0250 9020
Out..
lnL = -2082.031067
9021 lfun, 36084 eigenQcodon, 1190772 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -2094.207235 S = -1995.025910 -91.427893
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 174 patterns 11:41
did 20 / 174 patterns 11:41
did 30 / 174 patterns 11:41
did 40 / 174 patterns 11:41
did 50 / 174 patterns 11:41
did 60 / 174 patterns 11:41
did 70 / 174 patterns 11:42
did 80 / 174 patterns 11:42
did 90 / 174 patterns 11:42
did 100 / 174 patterns 11:42
did 110 / 174 patterns 11:42
did 120 / 174 patterns 11:42
did 130 / 174 patterns 11:42
did 140 / 174 patterns 11:42
did 150 / 174 patterns 11:42
did 160 / 174 patterns 11:42
did 170 / 174 patterns 11:42
did 174 / 174 patterns 11:42end of tree file.
Time used: 11:42
Model 7: beta
TREE # 1
(22, (21, (((9, (19, 10, 5), ((8, 15), 26, (18, 29), 28, 13, 25, 30), 16), 17), 4, 1)), ((23, 2), (((11, (14, 7, 27, 20, 24, 3)), 6), 12))); MP score: 235
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
33
0.059863 0.026074 0.030213 0.014852 0.054034 0.021573 0.058662 0.070203 0.055832 0.099125 0.081358 0.033716 0.038075 0.090118 0.067130 0.037105 0.057381 0.074869 0.024029 0.048816 0.014495 0.096875 0.050610 0.073969 0.060211 0.101186 0.107049 0.093268 0.064090 0.020336 0.010766 0.101819 0.038165 0.106272 0.036244 0.083774 0.082805 0.081713 0.073745 0.033766 0.096941 0.059383 0.076588 0.011052 2.080529 0.798306 1.425530
ntime & nrate & np: 44 1 47
Bounds (np=47):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 8.787109
np = 47
lnL0 = -2738.152866
Iterating by ming2
Initial: fx= 2738.152866
x= 0.05986 0.02607 0.03021 0.01485 0.05403 0.02157 0.05866 0.07020 0.05583 0.09912 0.08136 0.03372 0.03807 0.09012 0.06713 0.03711 0.05738 0.07487 0.02403 0.04882 0.01450 0.09687 0.05061 0.07397 0.06021 0.10119 0.10705 0.09327 0.06409 0.02034 0.01077 0.10182 0.03816 0.10627 0.03624 0.08377 0.08281 0.08171 0.07375 0.03377 0.09694 0.05938 0.07659 0.01105 2.08053 0.79831 1.42553
1 h-m-p 0.0000 0.0001 3179.8686 ++ 2453.618776 m 0.0001 99 | 1/47
2 h-m-p 0.0000 0.0001 1075.4822 ++ 2400.570125 m 0.0001 196 | 2/47
3 h-m-p 0.0000 0.0000 37958.8678 ++ 2355.727348 m 0.0000 292 | 3/47
4 h-m-p 0.0000 0.0000 191916.7113 ++ 2337.759894 m 0.0000 387 | 4/47
5 h-m-p 0.0000 0.0000 2632.0415 ++ 2280.270794 m 0.0000 481 | 5/47
6 h-m-p 0.0000 0.0000 1287.0925 ++ 2271.843282 m 0.0000 574 | 6/47
7 h-m-p 0.0000 0.0000 1826.3466 ++ 2250.387242 m 0.0000 666 | 7/47
8 h-m-p 0.0000 0.0000 2778.6667 ++ 2239.756152 m 0.0000 757 | 8/47
9 h-m-p 0.0000 0.0000 14252.3738 ++ 2204.359843 m 0.0000 847 | 9/47
10 h-m-p 0.0000 0.0000 10884.5043 ++ 2198.297930 m 0.0000 936 | 10/47
11 h-m-p 0.0000 0.0000 9199.6642 ++ 2197.640519 m 0.0000 1024 | 11/47
12 h-m-p 0.0000 0.0000 5193.9984 ++ 2196.820130 m 0.0000 1111 | 12/47
13 h-m-p 0.0000 0.0000 6913.1775 ++ 2193.937685 m 0.0000 1197 | 13/47
14 h-m-p 0.0000 0.0000 4424.7198 ++ 2186.753590 m 0.0000 1282 | 14/47
15 h-m-p 0.0000 0.0000 4924.1578 ++ 2184.199526 m 0.0000 1366 | 15/47
16 h-m-p 0.0000 0.0000 4572.3491 ++ 2172.631063 m 0.0000 1449 | 16/47
17 h-m-p 0.0000 0.0000 1948.5044 ++ 2172.315863 m 0.0000 1531 | 17/47
18 h-m-p 0.0000 0.0000 1427.7042 ++ 2169.036387 m 0.0000 1612 | 18/47
19 h-m-p 0.0000 0.0001 419.9082 +CCYC 2162.131234 3 0.0001 1699 | 18/47
20 h-m-p 0.0000 0.0000 672.4236 +YYCYC 2160.153123 4 0.0000 1784 | 18/47
21 h-m-p 0.0000 0.0001 322.1045 +YYYCCC 2158.337446 5 0.0001 1871 | 18/47
22 h-m-p 0.0000 0.0000 1679.9408 +YYYCCC 2154.446469 5 0.0000 1958 | 18/47
23 h-m-p 0.0000 0.0001 895.5996 +YYYYYCCCCC 2149.597714 9 0.0001 2051 | 18/47
24 h-m-p 0.0000 0.0002 995.3061 +YYYCCC 2139.729980 5 0.0002 2138 | 18/47
25 h-m-p 0.0000 0.0001 1158.7495 +YYCCC 2134.581918 4 0.0001 2224 | 18/47
26 h-m-p 0.0000 0.0000 939.7550 +YYYYYC 2132.131064 5 0.0000 2309 | 18/47
27 h-m-p 0.0000 0.0001 2153.5756 +YYYC 2124.768663 3 0.0001 2392 | 18/47
28 h-m-p 0.0001 0.0005 146.6272 CCC 2123.786832 2 0.0002 2475 | 18/47
29 h-m-p 0.0001 0.0003 125.8863 YCCC 2123.180008 3 0.0001 2559 | 18/47
30 h-m-p 0.0004 0.0021 39.4940 YCC 2122.601306 2 0.0006 2641 | 18/47
31 h-m-p 0.0003 0.0034 74.6273 +YCCCC 2117.561809 4 0.0021 2728 | 18/47
32 h-m-p 0.0009 0.0046 59.7504 YCCCC 2114.148818 4 0.0023 2814 | 18/47
33 h-m-p 0.0003 0.0014 31.5949 ++ 2113.076212 m 0.0014 2893 | 18/47
34 h-m-p -0.0000 -0.0000 26.9592
h-m-p: -8.66272640e-21 -4.33136320e-20 2.69591975e+01 2113.076212
.. | 18/47
35 h-m-p 0.0000 0.0001 828.0101 +CYC 2104.507653 2 0.0000 3052 | 18/47
36 h-m-p 0.0000 0.0001 450.4084 +YYYCYCCC 2098.289339 7 0.0001 3142 | 18/47
37 h-m-p 0.0000 0.0001 633.4735 +YYCCCC 2095.464220 5 0.0000 3230 | 18/47
38 h-m-p 0.0000 0.0001 427.7383 +YCC 2093.365896 2 0.0001 3313 | 18/47
39 h-m-p 0.0000 0.0002 221.1614 YCCCC 2092.137614 4 0.0001 3399 | 18/47
40 h-m-p 0.0000 0.0001 401.3808 YCYC 2091.389341 3 0.0000 3482 | 18/47
41 h-m-p 0.0000 0.0001 419.7356 +YCCC 2089.870153 3 0.0001 3567 | 18/47
42 h-m-p 0.0000 0.0001 322.1835 ++ 2089.012796 m 0.0001 3646 | 18/47
43 h-m-p 0.0001 0.0006 384.4584 YCCC 2087.433065 3 0.0001 3730 | 18/47
44 h-m-p 0.0000 0.0001 483.7813 YCCCC 2086.507968 4 0.0001 3816 | 18/47
45 h-m-p 0.0000 0.0000 82.9968 ++ 2086.416500 m 0.0000 3895 | 19/47
46 h-m-p 0.0000 0.0003 104.8468 YCCC 2086.287311 3 0.0001 3979 | 19/47
47 h-m-p 0.0000 0.0006 209.9810 +YYC 2085.909788 2 0.0001 4060 | 19/47
48 h-m-p 0.0001 0.0003 211.9272 CCCC 2085.585500 3 0.0001 4144 | 19/47
49 h-m-p 0.0001 0.0003 240.8590 CCC 2085.321210 2 0.0001 4226 | 19/47
50 h-m-p 0.0001 0.0005 193.0952 CCC 2084.943310 2 0.0001 4308 | 19/47
51 h-m-p 0.0001 0.0003 94.9730 CCCC 2084.859828 3 0.0001 4392 | 19/47
52 h-m-p 0.0001 0.0019 61.5985 YC 2084.716439 1 0.0002 4471 | 19/47
53 h-m-p 0.0001 0.0007 44.4599 YC 2084.691760 1 0.0001 4550 | 19/47
54 h-m-p 0.0001 0.0033 22.8047 YC 2084.659732 1 0.0002 4629 | 19/47
55 h-m-p 0.0004 0.0085 14.9338 C 2084.654791 0 0.0001 4707 | 19/47
56 h-m-p 0.0001 0.0129 15.3132 +YC 2084.614104 1 0.0008 4787 | 18/47
57 h-m-p 0.0001 0.0041 104.4553 YCC 2084.595137 2 0.0001 4868 | 18/47
58 h-m-p 0.0001 0.0004 44.4198 +YC 2084.565175 1 0.0002 4949 | 18/47
59 h-m-p 0.0003 0.0013 25.3520 CC 2084.560266 1 0.0001 5030 | 18/47
60 h-m-p 0.0002 0.1044 12.6574 ++CC 2084.416776 1 0.0052 5113 | 18/47
61 h-m-p 0.0007 0.0165 97.1321 +CCCC 2083.808453 3 0.0027 5199 | 18/47
62 h-m-p 0.0008 0.0047 342.0555 +YCYCCC 2081.780464 5 0.0022 5287 | 18/47
63 h-m-p 0.0074 0.0368 8.0557 CCC 2081.741034 2 0.0026 5370 | 18/47
64 h-m-p 0.0005 0.0198 42.7398 ++YCCC 2081.277797 3 0.0055 5456 | 18/47
65 h-m-p 0.3273 1.6364 0.3920 YCCC 2079.905791 3 0.7253 5540 | 18/47
66 h-m-p 1.3656 6.8278 0.0597 CCC 2079.727976 2 1.2122 5623 | 18/47
67 h-m-p 0.6749 3.3746 0.0114 YC 2079.670519 1 1.1681 5703 | 18/47
68 h-m-p 0.9214 8.0000 0.0144 CC 2079.661273 1 0.9952 5784 | 18/47
69 h-m-p 1.6000 8.0000 0.0061 YC 2079.660016 1 0.7584 5864 | 18/47
70 h-m-p 1.6000 8.0000 0.0010 YC 2079.659665 1 0.9065 5944 | 18/47
71 h-m-p 0.5518 8.0000 0.0016 C 2079.659625 0 0.8782 6023 | 18/47
72 h-m-p 1.6000 8.0000 0.0006 Y 2079.659620 0 1.0114 6102 | 18/47
73 h-m-p 1.6000 8.0000 0.0000 Y 2079.659619 0 0.9969 6181 | 18/47
74 h-m-p 1.6000 8.0000 0.0000 Y 2079.659619 0 1.2000 6260 | 18/47
75 h-m-p 1.6000 8.0000 0.0000 -Y 2079.659619 0 0.1705 6340 | 18/47
76 h-m-p 0.1639 8.0000 0.0000 C 2079.659619 0 0.2418 6419 | 18/47
77 h-m-p 0.3124 8.0000 0.0000 ---------------.. | 18/47
78 h-m-p 0.0038 1.9199 0.0095 ------------
Out..
lnL = -2079.659619
6601 lfun, 72611 eigenQcodon, 2904440 P(t)
end of tree file.
Time used: 31:45
Model 8: beta&w>1
TREE # 1
(22, (21, (((9, (19, 10, 5), ((8, 15), 26, (18, 29), 28, 13, 25, 30), 16), 17), 4, 1)), ((23, 2), (((11, (14, 7, 27, 20, 24, 3)), 6), 12))); MP score: 235
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
33
0.101699 0.087309 0.046554 0.075325 0.023103 0.024020 0.034432 0.106105 0.073057 0.090389 0.092543 0.062694 0.040506 0.107720 0.021538 0.012438 0.031549 0.081196 0.045934 0.015875 0.071609 0.055002 0.056075 0.077311 0.103981 0.101722 0.051951 0.050777 0.014467 0.031952 0.106056 0.024783 0.086758 0.085066 0.037479 0.084329 0.068277 0.037071 0.064414 0.023589 0.101154 0.036489 0.077271 0.057724 2.017593 0.900000 0.580249 1.442056 1.300000
ntime & nrate & np: 44 2 49
Bounds (np=49):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 8.591765
np = 49
lnL0 = -2573.263290
Iterating by ming2
Initial: fx= 2573.263290
x= 0.10170 0.08731 0.04655 0.07532 0.02310 0.02402 0.03443 0.10610 0.07306 0.09039 0.09254 0.06269 0.04051 0.10772 0.02154 0.01244 0.03155 0.08120 0.04593 0.01587 0.07161 0.05500 0.05608 0.07731 0.10398 0.10172 0.05195 0.05078 0.01447 0.03195 0.10606 0.02478 0.08676 0.08507 0.03748 0.08433 0.06828 0.03707 0.06441 0.02359 0.10115 0.03649 0.07727 0.05772 2.01759 0.90000 0.58025 1.44206 1.30000
1 h-m-p 0.0000 0.0001 1496.6956 ++ 2442.668208 m 0.0001 103 | 1/49
2 h-m-p 0.0000 0.0000 1494.3756 ++ 2425.114683 m 0.0000 204 | 2/49
3 h-m-p 0.0000 0.0000 29677.2253 ++ 2398.188079 m 0.0000 304 | 3/49
4 h-m-p 0.0000 0.0000 2521.0689 ++ 2390.465430 m 0.0000 403 | 4/49
5 h-m-p 0.0000 0.0000 1080.8455 ++ 2366.817076 m 0.0000 501 | 4/49
6 h-m-p 0.0000 0.0000 2114.5765 +YCCCY 2351.308962 4 0.0000 607 | 4/49
7 h-m-p 0.0000 0.0000 15653.9265 ++ 2343.880631 m 0.0000 704 | 5/49
8 h-m-p 0.0000 0.0000 1382.7023 ++ 2337.575937 m 0.0000 801 | 6/49
9 h-m-p 0.0000 0.0000 3222.2977 ++ 2293.295873 m 0.0000 897 | 7/49
10 h-m-p 0.0000 0.0000 2732.3960 ++ 2277.891579 m 0.0000 992 | 8/49
11 h-m-p 0.0000 0.0000 4578.2630 ++ 2261.133454 m 0.0000 1086 | 9/49
12 h-m-p 0.0000 0.0000 32431.8281 ++ 2241.856217 m 0.0000 1179 | 10/49
13 h-m-p 0.0000 0.0000 56792.9635 ++ 2238.578285 m 0.0000 1271 | 11/49
14 h-m-p 0.0000 0.0000 9844.6818 ++ 2231.934663 m 0.0000 1362 | 12/49
15 h-m-p 0.0000 0.0000 4759.0075 ++ 2215.131433 m 0.0000 1452 | 13/49
16 h-m-p 0.0000 0.0000 2965.9624 ++ 2212.850955 m 0.0000 1541 | 14/49
17 h-m-p 0.0000 0.0000 4872.7557 ++ 2206.684587 m 0.0000 1629 | 15/49
18 h-m-p 0.0000 0.0000 2670.5483 ++ 2204.589704 m 0.0000 1716 | 16/49
19 h-m-p 0.0000 0.0000 1600.5098 ++ 2204.329103 m 0.0000 1802 | 17/49
20 h-m-p 0.0000 0.0000 741.1068 ++ 2199.241726 m 0.0000 1887 | 18/49
21 h-m-p 0.0000 0.0001 975.7683 +CYYCCC 2188.352756 5 0.0001 1981 | 18/49
22 h-m-p 0.0000 0.0000 1500.0669 +YYYYYCCCCC 2185.063893 9 0.0000 2078 | 18/49
23 h-m-p 0.0000 0.0000 1052.3075 +YCYCCC 2181.507332 5 0.0000 2170 | 18/49
24 h-m-p 0.0000 0.0001 950.6835 +YYYCYCCC 2177.106395 7 0.0001 2264 | 18/49
25 h-m-p 0.0000 0.0000 14821.6422 +YYYYYCCCCC 2173.762281 9 0.0000 2361 | 18/49
26 h-m-p 0.0000 0.0001 1224.6738 +CYCCC 2164.833587 4 0.0001 2452 | 18/49
27 h-m-p 0.0000 0.0000 2213.8369 +YYCCC 2161.499096 4 0.0000 2542 | 18/49
28 h-m-p 0.0000 0.0001 895.2591 YC 2159.408767 1 0.0000 2626 | 18/49
29 h-m-p 0.0001 0.0003 104.9239 +YYCYC 2156.474394 4 0.0002 2715 | 18/49
30 h-m-p 0.0001 0.0007 37.8631 +YYYYCC 2153.910086 5 0.0005 2805 | 18/49
31 h-m-p 0.0001 0.0003 157.3147 +YYYCCC 2149.478352 5 0.0002 2896 | 18/49
32 h-m-p 0.0002 0.0011 65.8010 +YCYCCC 2147.291660 5 0.0007 2988 | 18/49
33 h-m-p 0.0003 0.0016 83.3297 CCCCC 2145.429359 4 0.0004 3079 | 18/49
34 h-m-p 0.0002 0.0010 94.8880 YCCC 2142.769059 3 0.0005 3167 | 18/49
35 h-m-p 0.0002 0.0010 99.1373 CCCC 2141.230229 3 0.0003 3256 | 18/49
36 h-m-p 0.0007 0.0070 41.7262 +YYC 2137.581273 2 0.0026 3342 | 18/49
37 h-m-p 0.0002 0.0010 161.5129 CCCCC 2135.498917 4 0.0004 3433 | 18/49
38 h-m-p 0.0012 0.0058 31.9799 CYCC 2134.510692 3 0.0015 3521 | 18/49
39 h-m-p 0.0017 0.0152 28.4088 YCCC 2132.418809 3 0.0035 3609 | 18/49
40 h-m-p 0.0087 0.0621 11.5288 +CCC 2127.985005 2 0.0384 3697 | 18/49
41 h-m-p 0.0018 0.0092 23.5748 ++ 2125.763220 m 0.0092 3780 | 19/49
42 h-m-p 0.0050 0.0252 12.3298 +YCCCC 2123.569598 4 0.0148 3871 | 19/49
43 h-m-p 0.0113 0.0566 3.1755 +CYCC 2120.932500 3 0.0419 3959 | 19/49
44 h-m-p 0.0106 0.0531 2.8444 ++ 2114.220114 m 0.0531 4041 | 19/49
45 h-m-p 0.0259 0.1297 5.5640 +YYCCC 2108.499195 4 0.0849 4130 | 18/49
46 h-m-p 0.0148 0.0742 5.1626 ++ 2104.262553 m 0.0742 4212 | 18/49
47 h-m-p 0.0122 0.0612 2.5592 ++ 2100.456290 m 0.0612 4295 | 18/49
48 h-m-p 0.0344 0.6653 4.5577 +YYCC 2097.090303 3 0.1100 4383 | 18/49
49 h-m-p 0.1337 0.6685 0.5110 +YYCCC 2089.797236 4 0.4297 4473 | 18/49
50 h-m-p 0.0277 0.1387 1.9176 +CYC 2085.258571 2 0.1095 4560 | 18/49
51 h-m-p 0.0026 0.0130 2.7241 ++ 2084.731432 m 0.0130 4643 | 18/49
52 h-m-p 0.1660 0.8299 0.1426 ++ 2082.855834 m 0.8299 4726 | 18/49
53 h-m-p 0.0000 0.0000 0.3732
h-m-p: 1.58534093e-17 7.92670463e-17 3.73175641e-01 2082.855834
.. | 18/49
54 h-m-p 0.0000 0.0001 1076.0309 CYYCCC 2081.105717 5 0.0000 4897 | 18/49
55 h-m-p 0.0000 0.0001 181.8176 CCC 2080.610813 2 0.0000 4984 | 18/49
56 h-m-p 0.0001 0.0003 66.3168 CYC 2080.515025 2 0.0000 5070 | 18/49
57 h-m-p 0.0000 0.0001 45.0423 ++ 2080.418384 m 0.0001 5153 | 18/49
58 h-m-p -0.0000 -0.0000 138.2031
h-m-p: -1.83006101e-22 -9.15030507e-22 1.38203105e+02 2080.418384
.. | 18/49
59 h-m-p 0.0000 0.0001 54.8062 +YYC 2080.366079 2 0.0000 5319 | 18/49
60 h-m-p 0.0001 0.0014 33.0578 +YCC 2080.300718 2 0.0002 5406 | 18/49
61 h-m-p 0.0000 0.0001 98.8772 ++ 2080.202170 m 0.0001 5489 | 19/49
62 h-m-p 0.0000 0.0005 179.9326 CCC 2080.065181 2 0.0001 5576 | 19/49
63 h-m-p 0.0003 0.0050 43.3241 C 2080.037831 0 0.0001 5658 | 19/49
64 h-m-p 0.0001 0.0009 32.4033 CC 2080.016281 1 0.0001 5742 | 19/49
65 h-m-p 0.0000 0.0016 95.0484 +YC 2079.963190 1 0.0001 5826 | 19/49
66 h-m-p 0.0003 0.0021 35.2330 YC 2079.934452 1 0.0002 5909 | 18/49
67 h-m-p 0.0001 0.0014 87.9411 YCC 2079.913063 2 0.0000 5994 | 18/49
68 h-m-p 0.0000 0.0002 44.1582 YC 2079.896553 1 0.0001 6078 | 18/49
69 h-m-p 0.0000 0.0000 56.7785 ++ 2079.885625 m 0.0000 6161 | 18/49
70 h-m-p 0.0000 0.0008 101.6458 +YCC 2079.828861 2 0.0001 6248 | 18/49
71 h-m-p 0.0001 0.0005 257.5230 YCC 2079.788551 2 0.0000 6334 | 18/49
72 h-m-p 0.0004 0.0018 12.6973 YC 2079.786031 1 0.0001 6418 | 18/49
73 h-m-p 0.0000 0.0019 28.2945 +CC 2079.774580 1 0.0002 6504 | 18/49
74 h-m-p 0.0003 0.0049 13.6146 YC 2079.770851 1 0.0001 6588 | 18/49
75 h-m-p 0.0000 0.0014 39.8536 CC 2079.765371 1 0.0001 6673 | 18/49
76 h-m-p 0.0001 0.0027 24.4860 YC 2079.762461 1 0.0001 6757 | 18/49
77 h-m-p 0.0002 0.0053 10.5293 YC 2079.760787 1 0.0001 6841 | 18/49
78 h-m-p 0.0000 0.0050 31.4642 +YC 2079.755987 1 0.0001 6926 | 18/49
79 h-m-p 0.0009 0.0075 3.4121 -C 2079.755786 0 0.0001 7010 | 18/49
80 h-m-p 0.0000 0.0046 4.8416 CC 2079.755544 1 0.0001 7095 | 18/49
81 h-m-p 0.0001 0.0062 4.0681 C 2079.755305 0 0.0001 7178 | 18/49
82 h-m-p 0.0002 0.0209 2.3507 +YC 2079.754743 1 0.0005 7263 | 18/49
83 h-m-p 0.0000 0.0033 34.0932 YC 2079.753592 1 0.0001 7347 | 18/49
84 h-m-p 0.0008 0.0333 2.8242 +YC 2079.750268 1 0.0027 7432 | 18/49
85 h-m-p 0.0021 0.0213 3.6773 CC 2079.746030 1 0.0030 7517 | 18/49
86 h-m-p 0.0008 0.0047 13.7512 +CC 2079.730403 1 0.0030 7603 | 18/49
87 h-m-p 0.0003 0.0016 14.8791 ++ 2079.715795 m 0.0016 7686 | 19/49
88 h-m-p 0.0130 0.0663 1.1804 YC 2079.714769 1 0.0026 7770 | 19/49
89 h-m-p 0.0054 0.4631 0.5706 +YC 2079.708117 1 0.0352 7854 | 19/49
90 h-m-p 0.0736 0.7005 0.2725 ++ 2079.668722 m 0.7005 7936 | 19/49
91 h-m-p -0.0000 -0.0000 0.1806
h-m-p: -1.82631474e-16 -9.13157371e-16 1.80551325e-01 2079.668722
.. | 19/49
92 h-m-p 0.0000 0.0030 3.6364 +C 2079.668309 0 0.0000 8098 | 19/49
93 h-m-p 0.0000 0.0172 5.0953 Y 2079.668143 0 0.0000 8180 | 19/49
94 h-m-p 0.0001 0.0304 1.7514 +C 2079.667838 0 0.0003 8263 | 19/49
95 h-m-p 0.0002 0.0184 1.9254 Y 2079.667738 0 0.0001 8345 | 19/49
96 h-m-p 0.0000 0.0123 6.6626 +C 2079.667349 0 0.0001 8428 | 19/49
97 h-m-p 0.0001 0.0005 9.7971 C 2079.667031 0 0.0001 8510 | 19/49
98 h-m-p 0.0004 0.0025 1.7315 Y 2079.666981 0 0.0001 8592 | 19/49
99 h-m-p 0.0001 0.0028 1.4958 Y 2079.666963 0 0.0000 8674 | 19/49
100 h-m-p 0.0000 0.0029 1.4570 +Y 2079.666912 0 0.0002 8757 | 19/49
101 h-m-p 0.0002 0.0789 1.4913 C 2079.666841 0 0.0003 8839 | 19/49
102 h-m-p 0.0000 0.0137 10.3164 +Y 2079.666610 0 0.0001 8922 | 19/49
103 h-m-p 0.0001 0.0097 22.1671 YC 2079.666213 1 0.0001 9005 | 19/49
104 h-m-p 0.0003 0.0396 7.0411 YC 2079.665287 1 0.0007 9088 | 19/49
105 h-m-p 0.0000 0.0035 163.9216 YC 2079.663104 1 0.0001 9171 | 19/49
106 h-m-p 0.0017 0.0159 6.9775 -CC 2079.662907 1 0.0002 9256 | 19/49
107 h-m-p 0.0001 0.0159 16.7543 YC 2079.662454 1 0.0002 9339 | 19/49
108 h-m-p 0.0001 0.0085 37.0051 YC 2079.662225 1 0.0000 9422 | 19/49
109 h-m-p 0.0006 0.1169 2.2163 C 2079.661977 0 0.0007 9504 | 19/49
110 h-m-p 0.0001 0.0048 20.1784 Y 2079.661874 0 0.0000 9586 | 19/49
111 h-m-p 0.0004 0.1998 1.5217 +C 2079.661518 0 0.0016 9669 | 19/49
112 h-m-p 0.0003 0.0105 8.8539 C 2079.661435 0 0.0001 9751 | 19/49
113 h-m-p 0.0001 0.0209 9.1675 C 2079.661342 0 0.0001 9833 | 19/49
114 h-m-p 0.0001 0.0173 10.1080 C 2079.661198 0 0.0001 9915 | 19/49
115 h-m-p 0.0003 0.0323 3.2144 Y 2079.661100 0 0.0002 9997 | 19/49
116 h-m-p 0.0000 0.0169 25.5779 +C 2079.660713 0 0.0001 10080 | 19/49
117 h-m-p 0.0080 0.2662 0.3703 -C 2079.660697 0 0.0005 10163 | 19/49
118 h-m-p 0.0000 0.0151 4.3106 C 2079.660677 0 0.0001 10245 | 19/49
119 h-m-p 0.0022 1.0771 0.4493 Y 2079.660559 0 0.0035 10327 | 19/49
120 h-m-p 0.0042 2.0792 0.5034 YC 2079.660271 1 0.0088 10410 | 19/49
121 h-m-p 0.0023 0.9645 1.8995 +++YCCCC 2079.636511 4 0.1741 10502 | 19/49
122 h-m-p 1.6000 8.0000 0.0244 CC 2079.634778 1 1.2855 10586 | 18/49
123 h-m-p 0.2113 2.0067 0.1483 YC 2079.634097 1 0.1543 10669 | 18/49
124 h-m-p 0.5044 8.0000 0.0454 +CCC 2079.631111 2 2.4136 10757 | 18/49
125 h-m-p 1.6000 8.0000 0.0325 YC 2079.629832 1 0.8189 10841 | 18/49
126 h-m-p 0.6777 8.0000 0.0393 YC 2079.629200 1 1.1183 10925 | 18/49
127 h-m-p 1.6000 8.0000 0.0081 C 2079.629120 0 1.4727 11008 | 18/49
128 h-m-p 1.6000 8.0000 0.0074 Y 2079.629115 0 0.7057 11091 | 18/49
129 h-m-p 1.6000 8.0000 0.0001 Y 2079.629114 0 0.9618 11174 | 18/49
130 h-m-p 1.2445 8.0000 0.0001 C 2079.629114 0 1.0917 11257 | 18/49
131 h-m-p 1.6000 8.0000 0.0000 Y 2079.629114 0 0.7915 11340 | 18/49
132 h-m-p 1.6000 8.0000 0.0000 C 2079.629114 0 0.4000 11423 | 18/49
133 h-m-p 0.6170 8.0000 0.0000 -Y 2079.629114 0 0.0099 11507 | 18/49
134 h-m-p 0.0269 8.0000 0.0000 ----C 2079.629114 0 0.0000 11594
Out..
lnL = -2079.629114
11595 lfun, 139140 eigenQcodon, 5611980 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -2094.089419 S = -1996.584998 -115.604340
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 174 patterns 1:09:59
did 20 / 174 patterns 1:09:59
did 30 / 174 patterns 1:10:00
did 40 / 174 patterns 1:10:00
did 50 / 174 patterns 1:10:00
did 60 / 174 patterns 1:10:00
did 70 / 174 patterns 1:10:00
did 80 / 174 patterns 1:10:01
did 90 / 174 patterns 1:10:01
did 100 / 174 patterns 1:10:01
did 110 / 174 patterns 1:10:01
did 120 / 174 patterns 1:10:01
did 130 / 174 patterns 1:10:02
did 140 / 174 patterns 1:10:02
did 150 / 174 patterns 1:10:02
did 160 / 174 patterns 1:10:02
did 170 / 174 patterns 1:10:02
did 174 / 174 patterns 1:10:02end of tree file.
Time used: 1:10:03
The loglikelihoods for models M1, M2, M7 and M8 are -2082.031067 -2082.031067 -2079.659619 -2079.629114 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
229E_human_USA_933_50_1993_M_AGT21348_1_1993_03_18_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
BtKY229E_8_M_APD51510_1_2010_06_Kenya_Bat_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLIL
camel_Riyadh_Ry141_2015_M_YP_009194642_1_2015_03_Saudi_Arabia_Camel_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVL
229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
HCoV_229E_Seattle_USA_SC9773_2016_NA_APT69892_1_2016_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
Camel229E_CoV_KCSP1_KEN_2015_NA_AOG74792_1_2015_Kenya_Camel_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVL
Camel229E_CoV_JC49_KSA_2014_NA_AOI28270_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVL
HCoV_229E_Seattle_USA_SC1143_2016_NA_APT69865_1_2016_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
HCoV_229E_BN1_GER_2015_NA_AOG74786_1_2015_Germany_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
HCoV_229E_Seattle_USA_SC9724_2018_NA_QEO75988_1_2018_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
CA08_1_2008_M_AFI49434_1_2008_USA_Camel_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVL
BtCoV_FO1A_F2_Hip_aba_GHA_2010_NA_ALK28784_1_2010_Ghana_Bat_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVL
HCoV_229E_USA_ACRI_0256_2017_M_QJY77966_1_2017_02_24_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
Camel229E_CoV_AC04_KSA_2014_NA_AOI28286_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVL
HCoV_229E_Seattle_USA_SC1212_2016_NA_APT69872_1_2016_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
J0304_NA_AFR79260_1_2009_Italy_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
229E_human_USA_933_40_1993_M_AGT21370_1_1993_03_11_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
HCoV_229E_Seattle_USA_SC379_2016_NA_ARK08623_1_2016_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
HCoV_229E_Seattle_USA_SC0865_2019_NA_QEG03788_1_2019_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
Camel229E_CoV_JC52_KSA_2014_NA_AOI28278_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVL
229E_M_AAG48596_1_NA_Thailand_Unknown_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
BtCoV_AT1A_F1_Hip_aba_GHA_2010_NA_ALK28796_1_2010_Ghana_Bat_Human_coronavirus_229E MGDKGVLYNNNASCN-DNIVTHLKNWNFGWNVILTIFILILQFGHYKYSRIFYGIKMLVL
BtKY229E_1_M_APD51502_1_2009_06_20_Kenya_Bat_Human_coronavirus_229E --------MSNNSIPQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRVFYGLKMLVL
camel_Abu_Dhabi_B38_M_ATI09440_1_2015_United_Arab_Emirates_Camel_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVL
HCoV_229E_USA_UNM_0186_2016_M_QJY77950_1_2016_02_09_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
HCoV_229E_Seattle_USA_SC1073_2016_NA_APT69886_1_2016_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
Camel229E_CoV_JC50_KSA_2014_NA_AOI28261_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVL
HCoV_229E_Seattle_USA_SC579_2016_NA_APT69852_1_2016_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
HCoV_229E_Seattle_USA_SC677_2016_NA_APT69859_1_2016_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
HCoV_229E_USA_UAMS_DID_0108_2017_M_QJY77982_1_2017_01_27_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVL
.: . ::*********.**:******:***********:***:***:*
229E_human_USA_933_50_1993_M_AGT21348_1_1993_03_18_USA_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
BtKY229E_8_M_APD51510_1_2010_06_Kenya_Bat_Human_coronavirus_229E WLLWPLVLALSIFDSWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAW
camel_Riyadh_Ry141_2015_M_YP_009194642_1_2015_03_Saudi_Arabia_Camel_Human_coronavirus_229E WLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAW
229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
HCoV_229E_Seattle_USA_SC9773_2016_NA_APT69892_1_2016_USA_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
Camel229E_CoV_KCSP1_KEN_2015_NA_AOG74792_1_2015_Kenya_Camel_Human_coronavirus_229E WLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAW
Camel229E_CoV_JC49_KSA_2014_NA_AOI28270_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E WLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAW
HCoV_229E_Seattle_USA_SC1143_2016_NA_APT69865_1_2016_USA_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
HCoV_229E_BN1_GER_2015_NA_AOG74786_1_2015_Germany_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
HCoV_229E_Seattle_USA_SC9724_2018_NA_QEO75988_1_2018_USA_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
CA08_1_2008_M_AFI49434_1_2008_USA_Camel_Human_coronavirus_229E WLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAW
BtCoV_FO1A_F2_Hip_aba_GHA_2010_NA_ALK28784_1_2010_Ghana_Bat_Human_coronavirus_229E WLLWPLVLALSIFDTWANWGSNWAFVALSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAW
HCoV_229E_USA_ACRI_0256_2017_M_QJY77966_1_2017_02_24_USA_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
Camel229E_CoV_AC04_KSA_2014_NA_AOI28286_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E WLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAW
HCoV_229E_Seattle_USA_SC1212_2016_NA_APT69872_1_2016_USA_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
J0304_NA_AFR79260_1_2009_Italy_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
229E_human_USA_933_40_1993_M_AGT21370_1_1993_03_11_USA_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
HCoV_229E_Seattle_USA_SC379_2016_NA_ARK08623_1_2016_USA_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
HCoV_229E_Seattle_USA_SC0865_2019_NA_QEG03788_1_2019_USA_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
Camel229E_CoV_JC52_KSA_2014_NA_AOI28278_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E WLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAW
229E_M_AAG48596_1_NA_Thailand_Unknown_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFFMAVSTLVMWVMYFANSFRLFRRARTFWAW
BtCoV_AT1A_F1_Hip_aba_GHA_2010_NA_ALK28796_1_2010_Ghana_Bat_Human_coronavirus_229E WLLWPLVLALSIFDTYANWNENWAFVALSLFMAIATLIMWVMYFVNSFRLFRRARTFWAW
BtKY229E_1_M_APD51502_1_2009_06_20_Kenya_Bat_Human_coronavirus_229E WLLWPLVLALSIFDTWANWGTNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAW
camel_Abu_Dhabi_B38_M_ATI09440_1_2015_United_Arab_Emirates_Camel_Human_coronavirus_229E WLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAW
HCoV_229E_USA_UNM_0186_2016_M_QJY77950_1_2016_02_09_USA_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
HCoV_229E_Seattle_USA_SC1073_2016_NA_APT69886_1_2016_USA_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
Camel229E_CoV_JC50_KSA_2014_NA_AOI28261_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E WLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAW
HCoV_229E_Seattle_USA_SC579_2016_NA_APT69852_1_2016_USA_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
HCoV_229E_Seattle_USA_SC677_2016_NA_APT69859_1_2016_USA_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
HCoV_229E_USA_UAMS_DID_0108_2017_M_QJY77982_1_2017_01_27_USA_Human_Human_coronavirus_229E WLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAW
**************::***. ******:*::**::**:******.***************
229E_human_USA_933_50_1993_M_AGT21348_1_1993_03_18_USA_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
BtKY229E_8_M_APD51510_1_2010_06_Kenya_Bat_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
camel_Riyadh_Ry141_2015_M_YP_009194642_1_2015_03_Saudi_Arabia_Camel_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEHMTVA
229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
HCoV_229E_Seattle_USA_SC9773_2016_NA_APT69892_1_2016_USA_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
Camel229E_CoV_KCSP1_KEN_2015_NA_AOG74792_1_2015_Kenya_Camel_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
Camel229E_CoV_JC49_KSA_2014_NA_AOI28270_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEHMTVA
HCoV_229E_Seattle_USA_SC1143_2016_NA_APT69865_1_2016_USA_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMAVA
HCoV_229E_BN1_GER_2015_NA_AOG74786_1_2015_Germany_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
HCoV_229E_Seattle_USA_SC9724_2018_NA_QEO75988_1_2018_USA_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
CA08_1_2008_M_AFI49434_1_2008_USA_Camel_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEHMTVA
BtCoV_FO1A_F2_Hip_aba_GHA_2010_NA_ALK28784_1_2010_Ghana_Bat_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVQNLPEYMTVA
HCoV_229E_USA_ACRI_0256_2017_M_QJY77966_1_2017_02_24_USA_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
Camel229E_CoV_AC04_KSA_2014_NA_AOI28286_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEHMTVA
HCoV_229E_Seattle_USA_SC1212_2016_NA_APT69872_1_2016_USA_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMAVA
J0304_NA_AFR79260_1_2009_Italy_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
229E_human_USA_933_40_1993_M_AGT21370_1_1993_03_11_USA_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
HCoV_229E_Seattle_USA_SC379_2016_NA_ARK08623_1_2016_USA_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
HCoV_229E_Seattle_USA_SC0865_2019_NA_QEG03788_1_2019_USA_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
Camel229E_CoV_JC52_KSA_2014_NA_AOI28278_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEHMTVA
229E_M_AAG48596_1_NA_Thailand_Unknown_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
BtCoV_AT1A_F1_Hip_aba_GHA_2010_NA_ALK28796_1_2010_Ghana_Bat_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPTLQAPTGITVTLLSGVLYVDGHRIASGIQVHNLPEYMSVA
BtKY229E_1_M_APD51502_1_2009_06_20_Kenya_Bat_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPTQQAPTGITVTLLSGVLYVDGHRLASGIQVHNLPEYMSVA
camel_Abu_Dhabi_B38_M_ATI09440_1_2015_United_Arab_Emirates_Camel_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEHMTVA
HCoV_229E_USA_UNM_0186_2016_M_QJY77950_1_2016_02_09_USA_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
HCoV_229E_Seattle_USA_SC1073_2016_NA_APT69886_1_2016_USA_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
Camel229E_CoV_JC50_KSA_2014_NA_AOI28261_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEHMTVA
HCoV_229E_Seattle_USA_SC579_2016_NA_APT69852_1_2016_USA_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
HCoV_229E_Seattle_USA_SC677_2016_NA_APT69859_1_2016_USA_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
HCoV_229E_USA_UAMS_DID_0108_2017_M_QJY77982_1_2017_01_27_USA_Human_Human_coronavirus_229E NPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVA
******************** *********************:***:**:****:*:**
229E_human_USA_933_50_1993_M_AGT21348_1_1993_03_18_USA_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
BtKY229E_8_M_APD51510_1_2010_06_Kenya_Bat_Human_coronavirus_229E VPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPQSNMSENERLLHLI
camel_Riyadh_Ry141_2015_M_YP_009194642_1_2015_03_Saudi_Arabia_Camel_Human_coronavirus_229E VPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
HCoV_229E_Seattle_USA_SC9773_2016_NA_APT69892_1_2016_USA_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
Camel229E_CoV_KCSP1_KEN_2015_NA_AOG74792_1_2015_Kenya_Camel_Human_coronavirus_229E VPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
Camel229E_CoV_JC49_KSA_2014_NA_AOI28270_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E VPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
HCoV_229E_Seattle_USA_SC1143_2016_NA_APT69865_1_2016_USA_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
HCoV_229E_BN1_GER_2015_NA_AOG74786_1_2015_Germany_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
HCoV_229E_Seattle_USA_SC9724_2018_NA_QEO75988_1_2018_USA_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
CA08_1_2008_M_AFI49434_1_2008_USA_Camel_Human_coronavirus_229E VPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
BtCoV_FO1A_F2_Hip_aba_GHA_2010_NA_ALK28784_1_2010_Ghana_Bat_Human_coronavirus_229E VPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
HCoV_229E_USA_ACRI_0256_2017_M_QJY77966_1_2017_02_24_USA_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
Camel229E_CoV_AC04_KSA_2014_NA_AOI28286_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E VPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
HCoV_229E_Seattle_USA_SC1212_2016_NA_APT69872_1_2016_USA_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
J0304_NA_AFR79260_1_2009_Italy_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
229E_human_USA_933_40_1993_M_AGT21370_1_1993_03_11_USA_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
HCoV_229E_Seattle_USA_SC379_2016_NA_ARK08623_1_2016_USA_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
HCoV_229E_Seattle_USA_SC0865_2019_NA_QEG03788_1_2019_USA_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
Camel229E_CoV_JC52_KSA_2014_NA_AOI28278_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E VPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
229E_M_AAG48596_1_NA_Thailand_Unknown_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
BtCoV_AT1A_F1_Hip_aba_GHA_2010_NA_ALK28796_1_2010_Ghana_Bat_Human_coronavirus_229E VPSTTIIYSRVGRSVNSRNNTGWMFYVRVKHGDFSAVSSPQSNMTENERLLHLV
BtKY229E_1_M_APD51502_1_2009_06_20_Kenya_Bat_Human_coronavirus_229E VPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMSENERLLHLI
camel_Abu_Dhabi_B38_M_ATI09440_1_2015_United_Arab_Emirates_Camel_Human_coronavirus_229E VPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
HCoV_229E_USA_UNM_0186_2016_M_QJY77950_1_2016_02_09_USA_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
HCoV_229E_Seattle_USA_SC1073_2016_NA_APT69886_1_2016_USA_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
Camel229E_CoV_JC50_KSA_2014_NA_AOI28261_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E VPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI
HCoV_229E_Seattle_USA_SC579_2016_NA_APT69852_1_2016_USA_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
HCoV_229E_Seattle_USA_SC677_2016_NA_APT69859_1_2016_USA_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
HCoV_229E_USA_UAMS_DID_0108_2017_M_QJY77982_1_2017_01_27_USA_Human_Human_coronavirus_229E VPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
*****************:*.***:**************** ***:*******:.
>229E_human_USA_933_50_1993_M_AGT21348_1_1993_03_18_USA_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACATTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTTTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTTCTTATGGCCGTATCAACACTCGTTATGTGGGTGATGTACTTCGCAAACAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCCCCCATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >BtKY229E_8_M_APD51510_1_2010_06_Kenya_Bat_Human_coronavirus_229E ------------------------ATGACCGAAGCTAATATTACTCAGGAGGAGTTGGTAACTCACCTGAAGAATTGGAATTTTAGTTGGAATATTATTCTGACTATATTCATCGTCATTTTACAGTTTGGCCATTATAAATATTCAAGAATCTTCTATGGATTGAAGATGCTGATTTTGTGGCTTTTATGGCCACTTGTGCTTGCACTTTCTATTTTCGATTCTTGGGCAAATTGGGGATCCAATTGGGCCTTTGTTGCATTCAGCCTTTTTATGGCCGTATCAACACTCATCATGTGGGTGATGTACTTCGTAAACAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAATCCGGAAGTGAATGCAATCACAGTCACAACCGTGCTGGGACAGACGTACTACCAACCCATTCAACAAGCTCCTACAGGCATTACGGTGACCTTGCTGAGCGGCGTGCTTTACGTGGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACTTACCTGAATACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGGGTTGGAAGGTCCGTAAATTCACGAAACAGCACAGGCTGGGTTTTCTACGTTCGAGTAAAACACGGTGACTTTTCTGCAGTGAGCTCTCCACAGAGCAATATGTCAGAAAATGAAAGATTGCTTCATTTGATC >camel_Riyadh_Ry141_2015_M_YP_009194642_1_2015_03_Saudi_Arabia_Camel_Human_coronavirus_229E ------------------------ATGACTGAAGCTAATATTACTCAGGAGGAGTTGGTAACTCACCTGAAAAATTGGAATTTTAGTTGGAATATTATTCTAACTATTTTCATTGTCATTCTTCAGTTTGGCCATTATAAATACTCAAGAATCTTTTATGGTCTGAAGATGCTAGTTTTGTGGCTTTTGTGGCCACTTGTACTTGCACTTTCAATCTTTGACACTTGGGCAAACTGGGGATCCAACTGGGCCTTTGTCGCATTCAGCCTTTTTATGGCCGTATCAACACTCATTATGTGGGTGATGTATTTCGTAAATAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAATCCGGAAGTGAATGCAATCACAGTCACAACCGTGCTGGGACAGACGTACTACCAACCCATTCAACAAGCTCCAACAGGCATTACGGTGACCTTGTTGAGCGGCGTGCTTTACGTGGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAACACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCACGAAACAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGACTTTTCTGCAGTGAGCTCTCCTACGAGCAATATGACAGAAAACGAAAGATTGCTTCATTTGATC >229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACACTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTTTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTTCTTATGGCCGTATCAACACTCGTTATGTGGGTGATGTACTTCGCAAACAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCCCCCATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >HCoV_229E_Seattle_USA_SC9773_2016_NA_APT69892_1_2016_USA_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACACTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTTTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTCCTTATGGCCGTATCAACACTCGTTATGTGGGTGATGTACTTTGCAAATAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCTAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCCCCCATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >Camel229E_CoV_KCSP1_KEN_2015_NA_AOG74792_1_2015_Kenya_Camel_Human_coronavirus_229E ------------------------ATGACTGAAGCTAATATTACTCAGGAGGAGTTGGTAACTCACCTGAAAAATTGGAATTTTAGTTGGAATATTATTCTAACTATTTTCATTGTCATTCTTCAGTTTGGCCATTATAAATACTCAAGAATCTTTTATGGTCTGAAGATGCTAGTTTTGTGGCTTTTGTGGCCACTTGTACTTGCACTTTCAATCTTTGACACTTGGGCAAACTGGGGATCCAACTGGGCCTTTGTCGCATTCAGCCTTTTTATGGCCGTATCAACACTCATTATGTGGGTGATGTATTTCGTAAATAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAACCCGGAAGTGAATGCAATCACAGTCACAACCGTGCTGGGACAGACGTACTACCAACCCATTCAACAAGCTCCAACAGGCATTACGGTGACTTTGCTGAGCGGTGTGCTTTACGTGGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCACGAAACAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGACTTTTCTGCAGTGAGCTCTCCTACGAGCAATATGACAGAAAACGAAAGATTGCTTCATTTGATC >Camel229E_CoV_JC49_KSA_2014_NA_AOI28270_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E ------------------------ATGACTGAAGCTAATATTACTCAGGAGGAGTTGGTAACTCACCTGAAAAATTGGAATTTTAGTTGGAATATTATTCTAACTATTTTCATTGTCATTCTTCAGTTTGGCCATTATAAATACTCAAGAATCTTTTATGGTCTGAAGATGCTAGTTTTGTGGCTTTTGTGGCCACTTGTACTTGCACTTTCAATCTTTGACACTTGGGCAAACTGGGGATCCAACTGGGCCTTTGTCGCATTCAGCCTTTTTATGGCCGTATCAACACTCATTATGTGGGTGATGTATTTCGTAAATAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAACCCGGAAGTGAATGCAATCACAGTCACAACCGTGCTGGGACAGACGTACTACCAACCCATTCAACAAGCTCCAACAGGCATTACGGTGACCTTGTTGAGCGGCGTGCTTTACGTGGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAACACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCACGAAACAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGACTTTTCTGCAGTGAGCTCTCCTACGAGCAATATGACAGAAAACGAAAGATTGCTTCATTTGATC >HCoV_229E_Seattle_USA_SC1143_2016_NA_APT69865_1_2016_USA_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACACTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTCTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTCCTTATGGCCGTATCAACACTCGTTATGTGGGTTATGTACTTTGCAAATAGTTTCAGACTTTTCAGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGGCAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCCCCCATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >HCoV_229E_BN1_GER_2015_NA_AOG74786_1_2015_Germany_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACACTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTTTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTCCTTATGGCCGTATCAACACTCGTTATGTGGGTGATGTACTTTGCAAATAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCCCCCATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >HCoV_229E_Seattle_USA_SC9724_2018_NA_QEO75988_1_2018_USA_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACACTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTTTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTCCTTATGGCCGTATCAACACTCGTTATGTGGGTGATGTACTTTGCAAATAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCTAGTACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCCCCCATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >CA08_1_2008_M_AFI49434_1_2008_USA_Camel_Human_coronavirus_229E ------------------------ATGACTGAAGCTAATATTACTCAGGAGGAGTTGGTAACTCACCTGAAAAATTGGAATTTTAGTTGGAATATTATTCTAACTATTTTCATTGTCATTCTTCAGTTTGGCCATTATAAATACTCAAGAATCTTTTATGGTCTGAAGATGCTAGTTTTGTGGCTTTTGTGGCCACTTGTACTTGCACTTTCAATCTTTGACACTTGGGCAAACTGGGGATCCAACTGGGCCTTTGTCGCATTCAGCCTTTTTATGGCCGTATCAACACTCATTATGTGGGTGATGTATTTCGTAAATAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAACCCGGAAGTGAATGCAATCACAGTCACAACCGTGCTGGGACAGACGTACTACCAACCCATTCAACAAGCTCCAACAGGCATTACGGTGACCTTGCTGAGCGGCGTGCTTTACGTGGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAACACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCACGAAACAGCACAGGTTGGGTTTTCTACGTACGAGTAAAACACGGTGACTTTTCTGCAGTGAGCTCTCCTACGAGCAATATGACAGAAAACGAAAGATTGCTTCATTTGATC >BtCoV_FO1A_F2_Hip_aba_GHA_2010_NA_ALK28784_1_2010_Ghana_Bat_Human_coronavirus_229E ------------------------ATGACTGAAGCTAATATTACTCAGGAGGAGTTGGTAACTCACCTGAAAAATTGGAATTTTAGTTGGAATATTATTCTAACTATTTTCATTGTCATTCTTCAGTTTGGCCATTATAAATACTCAAGAATCTTTTATGGGCTGAAAATGCTAGTTTTGTGGCTTTTGTGGCCACTTGTACTTGCACTTTCAATCTTTGACACTTGGGCAAACTGGGGATCCAACTGGGCCTTTGTTGCACTCAGCCTTTTTATGGCCGTATCAACACTCATTATGTGGGTGATGTACTTCGTAAACAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAACCCGGAAGTGAATGCAATCACAGTCACGACCGTGCTGGGACAGACGTACTACCAACCCATTCAACAAGCTCCTACAGGCATCACGGTGACCTTGCTGAGCGGCGTGCTTTACGTGGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCAAAATTTACCTGAGTACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGGGTCGGAAGATCCGTAAATTCACGAAACAGCACTGGCTGGGTTTTCTACGTACGAGTAAAGCACGGTGACTTTTCTGCAGTGAGCTCACCGACGAGCAACATGACAGAAAATGAAAGATTGCTTCATTTGATC >HCoV_229E_USA_ACRI_0256_2017_M_QJY77966_1_2017_02_24_USA_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACACTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTCTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTCCTTATGGCCGTATCAACACTCGTTATGTGGGTGATGTACTTTGCAAATAGTTTCAGACTTTTCAGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCCCCCATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >Camel229E_CoV_AC04_KSA_2014_NA_AOI28286_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E ------------------------ATGACTGAAGCTAATATTACTCAGGAGGAGTTGGTAACTCACCTGAAAAATTGGAATTTTAGTTGGAATATTATTCTAACTATTTTCATTGTCATTCTTCAGTTTGGCCATTATAAATACTCAAGAATCTTTTATGGTCTGAAGATGCTAGTTTTGTGGCTTTTGTGGCCACTTGTACTTGCACTTTCAATTTTTGACACTTGGGCAAACTGGGGATCCAACTGGGCCTTTGTCGCATTCAGCCTTTTTATGGCCGTATCAACACTCATTATGTGGGTGATGTATTTCGTAAATAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAACCCGGAAGTGAATGCAATCACAGTCACAACCGTGCTGGGACAGACGTACTACCAACCCATTCAACAAGCTCCAACAGGCATTACGGTGACCTTGTTGAGCGGCGTGCTTTACGTGGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAACACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCACGAAACAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGACTTTTCTGCAGTGAGCTCTCCTACGAGCAATATGACAGAAAACGAAAGATTGCTTCATTTGATC >HCoV_229E_Seattle_USA_SC1212_2016_NA_APT69872_1_2016_USA_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACACTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTCTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTCCTTATGGCCGTATCAACACTCGTTATGTGGGTTATGTACTTTGCAAATAGTTTCAGACTTTTCAGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGGCAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCCCCCATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >J0304_NA_AFR79260_1_2009_Italy_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACACTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTTTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTCCTTATGGCCGTATCAACACTCGTTATGTGGGTGATGTACTTTGCAAATAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCCCCCATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >229E_human_USA_933_40_1993_M_AGT21370_1_1993_03_11_USA_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACACTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTTTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTTCTTATGGCCGTATCAACACTCGTTATGTGGGTGATGTACTTCGCAAATAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCCCCCATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >HCoV_229E_Seattle_USA_SC379_2016_NA_ARK08623_1_2016_USA_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACACTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTCTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTCCTTATGGCCGTATCAACACTCGTTATGTGGGTGATGTACTTTGCAAATAGTTTCAGACTTTTCAGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCGAGTACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCTCCTATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >HCoV_229E_Seattle_USA_SC0865_2019_NA_QEG03788_1_2019_USA_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACACTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTTTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTCCTTATGGCCGTATCAACACTCGTTATGTGGGTGATGTACTTTGCAAATAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCTAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCCCCCATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >Camel229E_CoV_JC52_KSA_2014_NA_AOI28278_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E ------------------------ATGACTGAAGCTAATATTACTCAGGAGGAGTTGGTAACTCACCTGAAAAATTGGAATTTTAGTTGGAATATTATTCTAACTATTTTCATTGTCATTCTTCAGTTTGGCCATTATAAATACTCAAGAATCTTTTATGGTCTGAAGATGCTAGTTTTGTGGCTTTTGTGGCCACTTGTACTTGCACTTTCAATCTTTGACACTTGGGCAAACTGGGGATCCAACTGGGCCTTTGTCGCATTCAGCCTTTTTATGGCCGTATCAACACTCATTATGTGGGTGATGTATTTCGTAAATAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAACCCGGAAGTGAATGCAATCACAGTCACAACCGTGCTGGGACAGACGTACTACCAACCCATTCAACAAGCTCCAACAGGCATTACGGTGACCTTGTTGAGCGGCGTGCTTTACGTGGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAACACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCACGAAACAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGACTTTTCTGCAGTGAGCTCTCCTACGAGCAATATGACAGAAAACGAAAGATTGCTTCATTTGATC >229E_M_AAG48596_1_NA_Thailand_Unknown_Human_coronavirus_229E ------------------------ATGTCAAATGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACACTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTCGTACTTGCTTTGTCAATCTTTGACACCTGGGCTAATTGGGATTCTAATTGGGCCTTTGTTGCATTTAGCTTTTTTATGGCCGTATCAACACTCGTTATGTGGGTGATGTACTTCGCAAACAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGCTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCACAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCTCCCATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >BtCoV_AT1A_F1_Hip_aba_GHA_2010_NA_ALK28796_1_2010_Ghana_Bat_Human_coronavirus_229E ATGGGTGACAAAGGTGTGTTGTACAACAACAATGCCTCGTGTAAC---GACAATATCGTTACACACTTGAAAAATTGGAATTTTGGTTGGAATGTTATCCTAACCATATTCATTCTAATTTTGCAGTTTGGACATTACAAATATTCCAGAATCTTTTATGGCATCAAAATGCTCGTGTTGTGGCTGTTATGGCCACTTGTACTCGCATTGTCTATTTTTGACACCTATGCTAACTGGAATGAGAATTGGGCCTTTGTTGCATTAAGCCTTTTTATGGCCATAGCCACACTTATTATGTGGGTTATGTATTTCGTAAATAGTTTCAGACTTTTCCGTCGTGCTCGAACTTTTTGGGCATGGAACCCGGAAGTGAATGCAATCACAGTCACAACCGTGCTGGGACAGACTTACTACCAACCTACTCTACAAGCCCCCACAGGGATTACAGTAACCCTGTTGAGCGGTGTTCTTTACGTGGACGGCCATAGAATCGCTTCAGGTATTCAGGTTCATAATTTACCTGAGTACATGTCGGTTGCCGTGCCGAGCACTACTATTATTTATAGTAGGGTCGGGAGGTCTGTCAATTCACGTAACAACACAGGTTGGATGTTTTATGTCAGAGTAAAGCACGGTGACTTTTCTGCAGTGAGCTCTCCACAGAGCAATATGACAGAAAATGAGCGATTGCTTCATTTAGTC >BtKY229E_1_M_APD51502_1_2009_06_20_Kenya_Bat_Human_coronavirus_229E ------------------------ATGTCGAACAATTCAATTCCGCAGGAGGAGTTGGTAACTCACCTGAAAAATTGGAACTTTAGTTGGAATATAATTCTGACTATTTTCATTGTCATTTTACAGTTTGGCCATTATAAATACTCAAGAGTCTTCTATGGTTTGAAAATGTTAGTACTTTGGTTATTATGGCCACTTGTACTTGCACTTTCAATCTTTGACACTTGGGCTAATTGGGGAACCAATTGGGCCTTTGTTGCATTCAGCCTTTTTATGGCCGTATCAACACTCATTATGTGGGTGATGTACTTCGTAAACAGTTTCAGACTTTTCCGCCGTGCTCGAACTTTTTGGGCATGGAATCCGGAAGTGAATGCAATCACAGTCACAACCGTGCTGGGACAGACGTACTACCAACCCACACAACAAGCTCCTACAGGCATTACGGTGACCTTGCTGAGCGGTGTGCTTTACGTGGACGGACATAGATTGGCTTCAGGTATTCAGGTTCATAACCTACCTGAATACATGTCAGTTGCCGTGCCGAGTACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCACGAAACAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGACTTTTCTGCAGTCAGCTCACCTACGAGCAACATGTCAGAAAATGAAAGATTGCTTCATTTAATC >camel_Abu_Dhabi_B38_M_ATI09440_1_2015_United_Arab_Emirates_Camel_Human_coronavirus_229E ------------------------ATGACTGAAGCTAATATTACTCAGGAGGAGTTGGTAACTCACCTGAAAAATTGGAATTTTAGTTGGAATATTATTCTAACTATTTTCATTGTCATTCTTCAGTTTGGCCATTATAAATACTCAAGAATCTTTTATGGTCTGAAGATGCTAGTTTTGTGGCTTTTGTGGCCACTTGTACTTGCACTTTCAATCTTTGACACTTGGGCAAACTGGGGATCCAACTGGGCCTTTGTCGCATTCAGCCTTTTTATGGCCGTATCAACACTCATTATGTGGGTGATGTATTTCGTAAATAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAACCCGGAAGTGAATGCAATCACAGTCACAACCGTGCTGGGACAGACGTACTACCAACCCATTCAACAAGCTCCAACAGGCATTACGGTGACCTTGTTGAGCGGCGTGCTTTACGTGGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAACACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCACGAAACAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGACTTTTCTGCAGTGAGCTCTCCTACGAGCAATATGACAGAAAACGAAAGATTGCTTCATTTGATC >HCoV_229E_USA_UNM_0186_2016_M_QJY77950_1_2016_02_09_USA_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACATTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTCTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTCCTTATGGCCGTATCAACACTCGTTATGTGGGTGATGTACTTTGCAAATAGTTTCAGACTTTTCAGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCCCCCATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >HCoV_229E_Seattle_USA_SC1073_2016_NA_APT69886_1_2016_USA_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACACTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTCTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTCCTTATGGCCGTATCAACACTCGTTATGTGGGTGATGTACTTTGCAAATAGTTTCAGACTTTTCAGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCCCCCATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >Camel229E_CoV_JC50_KSA_2014_NA_AOI28261_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E ------------------------ATGACTGAAGCTAATATTACTCAGGAGGAGTTGGTAACTCACCTGAAAAATTGGAATTTTAGTTGGAATATTATTCTAACTATTTTCATTGTCATTCTTCAGTTTGGCCATTATAAATACTCAAGAATCTTTTATGGTCTGAAGATGCTAGTTTTGTGGCTTTTGTGGCCACTTGTACTTGCACTTTCAATCTTTGACACTTGGGCAAACTGGGGATCCAACTGGGCCTTTGTCGCATTCAGCCTTTTTATGGCCGTATCAACACTCATTATGTGGGTGATGTATTTCGTAAATAGTTTCAGACTTTTCCGACGTGCTCGAACTTTTTGGGCATGGAACCCGGAAGTGAATGCAATCACAGTCACAACCGTGCTGGGACAGACGTACTACCAACCCATTCAACAAGCTCCAACAGGCATTACGGTGACCTTGTTGAGCGGCGTGCTTTACGTGGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAACACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCACGAAACAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGACTTTTCTGCAGTGAGCTCTCCTACGAGCAATATGACAGAAAACGAAAGATTGCTTCATTTGATC >HCoV_229E_Seattle_USA_SC579_2016_NA_APT69852_1_2016_USA_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACACTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTCTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTCCTTATGGCCGTATCAACACTCGTTATGTGGGTGATGTACTTTGCAAATAGTTTCAGACTTTTCAGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCCCCCATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >HCoV_229E_Seattle_USA_SC677_2016_NA_APT69859_1_2016_USA_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACACTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTCTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTCCTTATGGCCGTATCAACACTCGTTATGTGGGTGATGTACTTTGCAAATAGTTTCAGACTTTTCAGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCGAGTACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCTCCTATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC >HCoV_229E_USA_UAMS_DID_0108_2017_M_QJY77982_1_2017_01_27_USA_Human_Human_coronavirus_229E ------------------------ATGTCAAACGACAATTGTACG---GGTGACATTGTCACCCATTTGAAGAATTGGAATTTTGGTTGGAATGTTATTCTAACCATATTCATTGTTATTCTTCAGTTTGGACACTATAAATACTCCAGATTGTTTTATGGTTTGAAGATGCTTGTACTGTGGCTTCTTTGGCCACTTGTACTTGCTCTGTCAATCTTTGACACCTGGGCTAATTGGGACTCTAATTGGGCCTTTGTTGCATTTAGCTTCCTTATGGCCGTATCAACACTCGTTATGTGGGTGATGTACTTTGCAAATAGTTTCAGACTTTTCAGACGTGCTCGAACTTTTTGGGCATGGAATCCTGAGGTTAATGCAATCACTGTCACAACCGTGTTGGGACAGACATACTATCAACCCATTCAACAAGCTCCAACAGGCATTACTGTGACCTTGTTGAGCGGCGTGCTTTACGTTGACGGACATAGATTGGCTTCAGGTGTTCAGGTTCATAACCTACCTGAATACATGACAGTTGCCGTGCCGAGCACTACTATAATTTATAGTAGAGTCGGAAGGTCCGTAAATTCTCAAAATAGCACAGGCTGGGTTTTCTACGTACGAGTAAAACACGGTGATTTTTCTGCAGTGAGCTCCCCCATGAGCAACATGACAGAAAACGAAAGATTGCTTCATTTTTTC
>229E_human_USA_933_50_1993_M_AGT21348_1_1993_03_18_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >BtKY229E_8_M_APD51510_1_2010_06_Kenya_Bat_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLILWLLWPLVLALSIFDSWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPQSNMSENERLLHLI >camel_Riyadh_Ry141_2015_M_YP_009194642_1_2015_03_Saudi_Arabia_Camel_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI >229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >HCoV_229E_Seattle_USA_SC9773_2016_NA_APT69892_1_2016_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >Camel229E_CoV_KCSP1_KEN_2015_NA_AOG74792_1_2015_Kenya_Camel_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI >Camel229E_CoV_JC49_KSA_2014_NA_AOI28270_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI >HCoV_229E_Seattle_USA_SC1143_2016_NA_APT69865_1_2016_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMAVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >HCoV_229E_BN1_GER_2015_NA_AOG74786_1_2015_Germany_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >HCoV_229E_Seattle_USA_SC9724_2018_NA_QEO75988_1_2018_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >CA08_1_2008_M_AFI49434_1_2008_USA_Camel_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI >BtCoV_FO1A_F2_Hip_aba_GHA_2010_NA_ALK28784_1_2010_Ghana_Bat_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVALSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVQNLPEYMTVAVPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI >HCoV_229E_USA_ACRI_0256_2017_M_QJY77966_1_2017_02_24_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >Camel229E_CoV_AC04_KSA_2014_NA_AOI28286_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI >HCoV_229E_Seattle_USA_SC1212_2016_NA_APT69872_1_2016_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMAVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >J0304_NA_AFR79260_1_2009_Italy_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >229E_human_USA_933_40_1993_M_AGT21370_1_1993_03_11_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >HCoV_229E_Seattle_USA_SC379_2016_NA_ARK08623_1_2016_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >HCoV_229E_Seattle_USA_SC0865_2019_NA_QEG03788_1_2019_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >Camel229E_CoV_JC52_KSA_2014_NA_AOI28278_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI >229E_M_AAG48596_1_NA_Thailand_Unknown_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFFMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >BtCoV_AT1A_F1_Hip_aba_GHA_2010_NA_ALK28796_1_2010_Ghana_Bat_Human_coronavirus_229E MGDKGVLYNNNASCN-DNIVTHLKNWNFGWNVILTIFILILQFGHYKYSRIFYGIKMLVLWLLWPLVLALSIFDTYANWNENWAFVALSLFMAIATLIMWVMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPTLQAPTGITVTLLSGVLYVDGHRIASGIQVHNLPEYMSVAVPSTTIIYSRVGRSVNSRNNTGWMFYVRVKHGDFSAVSSPQSNMTENERLLHLV >BtKY229E_1_M_APD51502_1_2009_06_20_Kenya_Bat_Human_coronavirus_229E --------MSNNSIPQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRVFYGLKMLVLWLLWPLVLALSIFDTWANWGTNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPTQQAPTGITVTLLSGVLYVDGHRLASGIQVHNLPEYMSVAVPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMSENERLLHLI >camel_Abu_Dhabi_B38_M_ATI09440_1_2015_United_Arab_Emirates_Camel_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI >HCoV_229E_USA_UNM_0186_2016_M_QJY77950_1_2016_02_09_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >HCoV_229E_Seattle_USA_SC1073_2016_NA_APT69886_1_2016_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >Camel229E_CoV_JC50_KSA_2014_NA_AOI28261_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E --------MTEANITQEELVTHLKNWNFSWNIILTIFIVILQFGHYKYSRIFYGLKMLVLWLLWPLVLALSIFDTWANWGSNWAFVAFSLFMAVSTLIMWVMYFVNSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEHMTVAVPSTTIIYSRVGRSVNSRNSTGWVFYVRVKHGDFSAVSSPTSNMTENERLLHLI >HCoV_229E_Seattle_USA_SC579_2016_NA_APT69852_1_2016_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >HCoV_229E_Seattle_USA_SC677_2016_NA_APT69859_1_2016_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF >HCoV_229E_USA_UAMS_DID_0108_2017_M_QJY77982_1_2017_01_27_USA_Human_Human_coronavirus_229E --------MSNDNCT-GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSNWAFVAFSFLMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNAITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF
Reading sequence file /data//pss_subsets/229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E.result/original_alignment/codeml/fasta/229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E.result.1
Found 30 sequences of length 702
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 7.1%
Found 105 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0% 99.8%100.0%
Using a window size of 80 with k as 12
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 118 polymorphic sites
**p-Value(s)**
----------
NSS: 4.00e-03 (1000 permutations)
Max Chi^2: 2.00e-03 (1000 permutations)
PHI (Permutation): 0.00e+00 (1000 permutations)
PHI (Normal): 2.66e-05
#NEXUS
[ID: 6716124624]
begin taxa;
dimensions ntax=30;
taxlabels
BtCoV_AT1A_F1_Hip_aba_GHA_2010_NA_ALK28796_1_2010_Ghana_Bat_Human_coronavirus_229E
BtKY229E_1_M_APD51502_1_2009_06_20_Kenya_Bat_Human_coronavirus_229E
CA08_1_2008_M_AFI49434_1_2008_USA_Camel_Human_coronavirus_229E
BtKY229E_8_M_APD51510_1_2010_06_Kenya_Bat_Human_coronavirus_229E
Camel229E_CoV_AC04_KSA_2014_NA_AOI28286_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E
Camel229E_CoV_JC49_KSA_2014_NA_AOI28270_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E
Camel229E_CoV_JC50_KSA_2014_NA_AOI28261_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E
Camel229E_CoV_JC52_KSA_2014_NA_AOI28278_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E
229E_M_AAG48596_1_NA_Thailand_Unknown_Human_coronavirus_229E
Camel229E_CoV_KCSP1_KEN_2015_NA_AOG74792_1_2015_Kenya_Camel_Human_coronavirus_229E
HCoV_229E_BN1_GER_2015_NA_AOG74786_1_2015_Germany_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC0865_2019_NA_QEG03788_1_2019_USA_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC1143_2016_NA_APT69865_1_2016_USA_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC1073_2016_NA_APT69886_1_2016_USA_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC1212_2016_NA_APT69872_1_2016_USA_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC379_2016_NA_ARK08623_1_2016_USA_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC579_2016_NA_APT69852_1_2016_USA_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC677_2016_NA_APT69859_1_2016_USA_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC9724_2018_NA_QEO75988_1_2018_USA_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC9773_2016_NA_APT69892_1_2016_USA_Human_Human_coronavirus_229E
HCoV_229E_USA_ACRI_0256_2017_M_QJY77966_1_2017_02_24_USA_Human_Human_coronavirus_229E
HCoV_229E_USA_UNM_0186_2016_M_QJY77950_1_2016_02_09_USA_Human_Human_coronavirus_229E
229E_human_USA_933_40_1993_M_AGT21370_1_1993_03_11_USA_Human_Human_coronavirus_229E
HCoV_229E_USA_UAMS_DID_0108_2017_M_QJY77982_1_2017_01_27_USA_Human_Human_coronavirus_229E
J0304_NA_AFR79260_1_2009_Italy_Human_Human_coronavirus_229E
camel_Abu_Dhabi_B38_M_ATI09440_1_2015_United_Arab_Emirates_Camel_Human_coronavirus_229E
camel_Riyadh_Ry141_2015_M_YP_009194642_1_2015_03_Saudi_Arabia_Camel_Human_coronavirus_229E
229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E
229E_human_USA_933_50_1993_M_AGT21348_1_1993_03_18_USA_Human_Human_coronavirus_229E
BtCoV_FO1A_F2_Hip_aba_GHA_2010_NA_ALK28784_1_2010_Ghana_Bat_Human_coronavirus_229E
;
end;
begin trees;
translate
1 BtCoV_AT1A_F1_Hip_aba_GHA_2010_NA_ALK28796_1_2010_Ghana_Bat_Human_coronavirus_229E,
2 BtKY229E_1_M_APD51502_1_2009_06_20_Kenya_Bat_Human_coronavirus_229E,
3 CA08_1_2008_M_AFI49434_1_2008_USA_Camel_Human_coronavirus_229E,
4 BtKY229E_8_M_APD51510_1_2010_06_Kenya_Bat_Human_coronavirus_229E,
5 Camel229E_CoV_AC04_KSA_2014_NA_AOI28286_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E,
6 Camel229E_CoV_JC49_KSA_2014_NA_AOI28270_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E,
7 Camel229E_CoV_JC50_KSA_2014_NA_AOI28261_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E,
8 Camel229E_CoV_JC52_KSA_2014_NA_AOI28278_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E,
9 229E_M_AAG48596_1_NA_Thailand_Unknown_Human_coronavirus_229E,
10 Camel229E_CoV_KCSP1_KEN_2015_NA_AOG74792_1_2015_Kenya_Camel_Human_coronavirus_229E,
11 HCoV_229E_BN1_GER_2015_NA_AOG74786_1_2015_Germany_Human_Human_coronavirus_229E,
12 HCoV_229E_Seattle_USA_SC0865_2019_NA_QEG03788_1_2019_USA_Human_Human_coronavirus_229E,
13 HCoV_229E_Seattle_USA_SC1143_2016_NA_APT69865_1_2016_USA_Human_Human_coronavirus_229E,
14 HCoV_229E_Seattle_USA_SC1073_2016_NA_APT69886_1_2016_USA_Human_Human_coronavirus_229E,
15 HCoV_229E_Seattle_USA_SC1212_2016_NA_APT69872_1_2016_USA_Human_Human_coronavirus_229E,
16 HCoV_229E_Seattle_USA_SC379_2016_NA_ARK08623_1_2016_USA_Human_Human_coronavirus_229E,
17 HCoV_229E_Seattle_USA_SC579_2016_NA_APT69852_1_2016_USA_Human_Human_coronavirus_229E,
18 HCoV_229E_Seattle_USA_SC677_2016_NA_APT69859_1_2016_USA_Human_Human_coronavirus_229E,
19 HCoV_229E_Seattle_USA_SC9724_2018_NA_QEO75988_1_2018_USA_Human_Human_coronavirus_229E,
20 HCoV_229E_Seattle_USA_SC9773_2016_NA_APT69892_1_2016_USA_Human_Human_coronavirus_229E,
21 HCoV_229E_USA_ACRI_0256_2017_M_QJY77966_1_2017_02_24_USA_Human_Human_coronavirus_229E,
22 HCoV_229E_USA_UNM_0186_2016_M_QJY77950_1_2016_02_09_USA_Human_Human_coronavirus_229E,
23 229E_human_USA_933_40_1993_M_AGT21370_1_1993_03_11_USA_Human_Human_coronavirus_229E,
24 HCoV_229E_USA_UAMS_DID_0108_2017_M_QJY77982_1_2017_01_27_USA_Human_Human_coronavirus_229E,
25 J0304_NA_AFR79260_1_2009_Italy_Human_Human_coronavirus_229E,
26 camel_Abu_Dhabi_B38_M_ATI09440_1_2015_United_Arab_Emirates_Camel_Human_coronavirus_229E,
27 camel_Riyadh_Ry141_2015_M_YP_009194642_1_2015_03_Saudi_Arabia_Camel_Human_coronavirus_229E,
28 229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E,
29 229E_human_USA_933_50_1993_M_AGT21348_1_1993_03_18_USA_Human_Human_coronavirus_229E,
30 BtCoV_FO1A_F2_Hip_aba_GHA_2010_NA_ALK28784_1_2010_Ghana_Bat_Human_coronavirus_229E
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:2.547464e-01,(9:3.223809e-03,(((11:1.096265e-03,(12:1.147756e-03,19:2.675411e-03,20:1.158822e-03)0.994:2.666585e-03,((13:1.107110e-03,15:1.154878e-03)1.000:4.472361e-03,14:1.141785e-03,(16:1.132888e-03,18:1.117111e-03)1.000:5.956230e-03,17:1.190347e-03,21:1.119318e-03,22:2.827243e-03,24:1.156663e-03)1.000:4.374438e-03,25:1.158656e-03)0.999:4.326721e-03,23:1.231541e-03)0.931:2.671713e-03,28:1.093460e-03,29:2.738804e-03)0.982:1.011232e-02)1.000:8.470743e-02,((2:7.021927e-02,4:4.828035e-02)0.551:1.364317e-02,(((3:3.020103e-03,(5:2.904645e-03,6:1.114931e-03,7:1.106746e-03,8:1.154565e-03,26:1.184243e-03,27:2.771995e-03)0.724:2.837984e-03)0.738:3.046771e-03,10:5.010419e-03)0.934:1.093455e-02,30:2.796263e-02)0.648:9.662754e-03)0.999:6.434421e-02);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:2.547464e-01,(9:3.223809e-03,(((11:1.096265e-03,(12:1.147756e-03,19:2.675411e-03,20:1.158822e-03):2.666585e-03,((13:1.107110e-03,15:1.154878e-03):4.472361e-03,14:1.141785e-03,(16:1.132888e-03,18:1.117111e-03):5.956230e-03,17:1.190347e-03,21:1.119318e-03,22:2.827243e-03,24:1.156663e-03):4.374438e-03,25:1.158656e-03):4.326721e-03,23:1.231541e-03):2.671713e-03,28:1.093460e-03,29:2.738804e-03):1.011232e-02):8.470743e-02,((2:7.021927e-02,4:4.828035e-02):1.364317e-02,(((3:3.020103e-03,(5:2.904645e-03,6:1.114931e-03,7:1.106746e-03,8:1.154565e-03,26:1.184243e-03,27:2.771995e-03):2.837984e-03):3.046771e-03,10:5.010419e-03):1.093455e-02,30:2.796263e-02):9.662754e-03):6.434421e-02);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -2201.07 -2234.00
2 -2203.37 -2240.33
--------------------------------------
TOTAL -2201.67 -2239.64
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.722374 0.006013 0.581276 0.885971 0.717310 965.49 975.01 1.000
r(A<->C){all} 0.083517 0.000644 0.037871 0.133808 0.081824 739.88 797.00 1.000
r(A<->G){all} 0.179708 0.001030 0.121399 0.246706 0.177974 780.22 831.89 1.000
r(A<->T){all} 0.153406 0.000760 0.101639 0.211179 0.151782 563.45 756.63 1.000
r(C<->G){all} 0.029484 0.000266 0.000611 0.058661 0.027708 494.16 538.84 1.000
r(C<->T){all} 0.470278 0.001841 0.387270 0.555125 0.470413 486.81 619.75 1.001
r(G<->T){all} 0.083606 0.000422 0.047249 0.126850 0.082255 912.00 920.84 1.000
pi(A){all} 0.262169 0.000233 0.231899 0.292024 0.262150 834.66 1040.46 1.000
pi(C){all} 0.203610 0.000186 0.177673 0.229175 0.203384 911.73 1009.33 1.000
pi(G){all} 0.218775 0.000222 0.191313 0.248524 0.218365 946.58 972.31 1.000
pi(T){all} 0.315445 0.000256 0.284858 0.345653 0.315528 1008.10 1060.01 1.000
alpha{1,2} 0.169066 0.003277 0.054137 0.292813 0.166508 605.12 613.20 1.000
alpha{3} 2.309145 1.437202 0.607576 4.674229 2.044494 708.59 905.62 1.000
pinvar{all} 0.256067 0.010549 0.034623 0.424268 0.266987 480.35 575.74 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/229E_human_USA_932_72_1993_M_AGT21363_1_1993_02_22_USA_Human_Human_coronavirus_229E.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 30 ls = 225
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 10 6 8 10 10 8 | Ser TCT 3 4 2 3 3 2 | Tyr TAT 4 4 4 4 4 4 | Cys TGT 1 0 0 1 1 0
TTC 6 8 6 6 6 6 | TCC 3 2 2 3 3 2 | TAC 6 6 5 6 6 6 | TGC 0 0 0 0 0 0
Leu TTA 0 3 0 0 0 0 | TCA 4 5 5 4 4 5 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 9 7 8 9 9 7 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 11 11 11 11 11 11
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 10 8 9 10 10 9 | Pro CCT 2 2 2 2 3 2 | His CAT 5 4 4 4 4 4 | Arg CGT 1 1 1 1 1 1
CTC 1 1 1 1 1 1 | CCC 2 1 1 2 2 1 | CAC 1 2 3 2 2 2 | CGC 0 0 0 0 0 0
CTA 2 0 3 2 2 3 | CCA 2 2 2 2 2 2 | Gln CAA 4 3 3 4 4 3 | CGA 3 4 4 3 3 4
CTG 1 5 3 1 1 4 | CCG 1 2 2 1 0 2 | CAG 3 4 3 3 3 3 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 7 9 10 7 7 10 | Thr ACT 5 6 8 5 5 9 | Asn AAT 10 11 9 10 11 8 | Ser AGT 2 3 3 2 2 3
ATC 2 5 4 2 2 4 | ACC 5 3 2 5 5 1 | AAC 5 3 5 5 4 6 | AGC 6 6 6 6 6 6
ATA 2 2 1 2 2 1 | ACA 7 6 7 7 7 7 | Lys AAA 2 2 3 2 2 3 | Arg AGA 5 4 5 5 5 5
Met ATG 8 7 7 8 8 7 | ACG 1 2 3 1 1 3 | AAG 2 2 1 2 2 1 | AGG 1 2 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 10 7 5 10 10 5 | Ala GCT 5 4 4 5 5 4 | Asp GAT 1 1 0 1 1 0 | Gly GGT 5 2 3 5 5 4
GTC 3 2 4 3 3 4 | GCC 3 3 3 3 3 3 | GAC 5 2 3 5 5 3 | GGC 3 4 4 3 3 3
GTA 6 5 7 6 6 7 | GCA 5 6 6 5 5 6 | Glu GAA 3 5 5 3 3 5 | GGA 4 5 4 4 4 4
GTG 6 9 8 6 6 8 | GCG 0 0 0 0 0 0 | GAG 1 2 2 1 1 2 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 8 10 10 10 8 8 | Ser TCT 2 3 3 3 2 1 | Tyr TAT 4 4 4 4 4 3 | Cys TGT 0 1 1 1 0 0
TTC 6 6 6 6 6 5 | TCC 2 3 3 3 2 2 | TAC 5 6 6 6 5 7 | TGC 0 0 0 0 0 0
Leu TTA 0 0 0 0 0 1 | TCA 5 4 4 4 5 6 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 8 8 9 9 7 7 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 11 11 11 11 11 11
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 9 10 10 10 9 9 | Pro CCT 2 2 2 3 2 2 | His CAT 4 4 4 4 4 3 | Arg CGT 1 1 1 1 1 1
CTC 1 1 1 1 1 2 | CCC 1 2 2 2 1 1 | CAC 3 2 2 2 3 2 | CGC 0 0 0 0 0 0
CTA 3 2 2 2 3 2 | CCA 2 2 2 2 2 1 | Gln CAA 3 4 4 4 3 4 | CGA 4 2 3 3 4 4
CTG 3 2 1 1 4 4 | CCG 2 1 1 0 2 3 | CAG 3 3 3 3 3 3 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 10 7 7 7 10 9 | Thr ACT 8 5 5 5 8 9 | Asn AAT 8 11 11 11 8 8 | Ser AGT 3 2 2 3 3 3
ATC 4 2 2 2 4 5 | ACC 2 5 5 5 2 2 | AAC 6 4 4 4 6 6 | AGC 6 6 6 5 6 6
ATA 1 2 2 2 1 1 | ACA 7 6 7 7 7 5 | Lys AAA 3 2 2 2 3 3 | Arg AGA 5 6 5 5 5 5
Met ATG 7 8 8 8 7 7 | ACG 3 1 1 1 3 4 | AAG 1 2 2 2 1 1 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 5 11 10 10 5 6 | Ala GCT 4 5 5 5 4 4 | Asp GAT 0 1 1 1 0 0 | Gly GGT 3 5 5 5 4 2
GTC 4 3 3 3 4 3 | GCC 3 3 3 3 3 3 | GAC 3 5 5 5 3 3 | GGC 4 3 3 3 3 4
GTA 7 6 6 6 7 7 | GCA 6 6 5 5 6 6 | Glu GAA 5 3 3 3 5 4 | GGA 4 4 4 4 4 4
GTG 8 5 6 6 8 8 | GCG 0 0 0 0 0 0 | GAG 2 1 1 1 2 3 | GGG 0 0 0 0 0 1
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 10 8 10 10 10 10 | Ser TCT 3 2 3 3 3 4 | Tyr TAT 4 4 4 4 4 4 | Cys TGT 1 0 1 1 1 1
TTC 6 6 6 6 6 6 | TCC 3 2 3 3 3 2 | TAC 6 5 6 6 6 6 | TGC 0 0 0 0 0 0
Leu TTA 0 0 0 0 0 0 | TCA 4 5 4 4 4 4 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 8 8 8 9 9 8 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 11 11 11 11 11 11
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 10 9 10 10 10 10 | Pro CCT 2 2 2 2 2 3 | His CAT 4 4 4 4 4 4 | Arg CGT 1 1 1 1 1 1
CTC 1 1 1 1 1 1 | CCC 2 1 2 2 2 1 | CAC 2 3 2 2 2 2 | CGC 0 0 0 0 0 0
CTA 2 3 2 2 2 2 | CCA 2 2 2 2 2 2 | Gln CAA 4 3 4 4 4 4 | CGA 2 4 2 3 3 2
CTG 2 3 2 1 1 2 | CCG 1 2 1 1 1 1 | CAG 3 3 3 3 3 3 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 7 11 7 7 7 7 | Thr ACT 5 8 5 5 5 5 | Asn AAT 11 8 11 11 11 11 | Ser AGT 2 3 2 2 2 3
ATC 2 3 2 2 2 2 | ACC 5 2 5 5 5 5 | AAC 4 6 4 4 4 4 | AGC 6 6 6 6 6 5
ATA 2 1 2 2 2 2 | ACA 7 7 6 7 7 7 | Lys AAA 2 3 2 2 2 2 | Arg AGA 6 5 6 5 5 6
Met ATG 8 7 8 8 8 8 | ACG 1 3 1 1 1 1 | AAG 2 1 2 2 2 2 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 10 5 11 10 10 10 | Ala GCT 5 4 5 5 5 5 | Asp GAT 1 0 1 1 1 1 | Gly GGT 5 3 5 5 5 5
GTC 3 4 3 3 3 3 | GCC 3 3 3 3 3 3 | GAC 5 3 5 5 5 5 | GGC 3 4 3 3 3 3
GTA 6 7 6 6 6 6 | GCA 5 6 6 5 5 5 | Glu GAA 3 5 3 3 3 3 | GGA 4 4 4 4 4 4
GTG 6 8 5 6 6 6 | GCG 0 0 0 0 0 0 | GAG 1 2 1 1 1 1 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 10 8 11 9 7 8 | Ser TCT 3 2 3 4 1 2 | Tyr TAT 4 4 4 6 3 4 | Cys TGT 1 0 1 1 0 0
TTC 6 6 6 4 7 6 | TCC 3 2 2 1 1 2 | TAC 6 5 6 5 7 5 | TGC 0 0 0 0 0 0
Leu TTA 0 0 0 4 5 0 | TCA 4 5 5 2 9 5 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 9 8 8 6 5 8 | TCG 0 0 0 2 1 0 | TAG 0 0 0 0 0 0 | Trp TGG 11 11 11 10 11 11
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 10 9 8 6 8 9 | Pro CCT 3 2 2 2 3 2 | His CAT 4 4 4 4 4 4 | Arg CGT 1 1 1 3 1 1
CTC 1 1 2 2 1 1 | CCC 2 1 2 1 1 1 | CAC 2 3 2 2 2 3 | CGC 0 0 0 0 1 0
CTA 2 3 2 3 1 3 | CCA 2 2 2 2 1 2 | Gln CAA 4 3 4 2 3 3 | CGA 3 4 3 2 3 4
CTG 1 3 2 3 4 3 | CCG 0 2 1 2 3 2 | CAG 3 3 3 4 3 3 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 7 10 7 8 9 10 | Thr ACT 5 8 5 5 6 8 | Asn AAT 11 8 11 13 9 8 | Ser AGT 2 3 2 2 4 3
ATC 2 4 2 6 3 4 | ACC 5 2 5 4 3 2 | AAC 4 6 4 7 6 6 | AGC 6 6 6 5 5 6
ATA 2 1 2 2 2 1 | ACA 7 7 7 8 6 7 | Lys AAA 2 3 2 3 4 3 | Arg AGA 5 5 5 4 5 5
Met ATG 8 7 8 7 7 7 | ACG 1 3 1 0 3 3 | AAG 2 1 2 1 0 1 | AGG 1 1 1 2 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 10 5 10 7 4 5 | Ala GCT 5 4 5 3 4 4 | Asp GAT 1 0 2 0 0 0 | Gly GGT 5 3 5 5 4 3
GTC 3 4 3 5 5 4 | GCC 3 3 3 6 3 3 | GAC 5 3 4 4 3 3 | GGC 3 4 3 2 3 4
GTA 6 7 6 4 8 7 | GCA 5 6 5 5 5 6 | Glu GAA 3 5 3 2 4 5 | GGA 4 4 4 2 4 4
GTG 6 8 6 6 7 8 | GCG 0 0 0 0 0 0 | GAG 1 2 1 3 2 2 | GGG 0 0 0 2 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 10 10 8 10 10 10 | Ser TCT 3 3 2 3 4 3 | Tyr TAT 4 4 4 4 4 4 | Cys TGT 1 1 0 1 1 1
TTC 6 6 6 6 6 6 | TCC 3 3 2 3 2 3 | TAC 6 6 5 6 6 6 | TGC 0 0 0 0 0 0
Leu TTA 0 0 0 0 0 0 | TCA 4 4 5 4 4 4 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 8 8 8 8 8 8 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 11 11 11 11 11 11
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 10 10 9 10 10 10 | Pro CCT 2 2 2 2 3 2 | His CAT 5 4 4 4 4 4 | Arg CGT 1 1 1 1 1 1
CTC 1 1 1 1 1 1 | CCC 2 2 1 2 1 2 | CAC 1 2 3 2 2 2 | CGC 0 0 0 0 0 0
CTA 2 2 3 2 2 2 | CCA 2 2 2 2 2 2 | Gln CAA 4 4 3 4 4 4 | CGA 2 2 4 2 2 2
CTG 2 2 3 2 2 2 | CCG 1 1 2 1 1 1 | CAG 3 3 3 3 3 3 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 7 7 10 7 7 7 | Thr ACT 5 5 8 5 5 5 | Asn AAT 11 11 8 11 11 11 | Ser AGT 2 2 3 2 3 2
ATC 2 2 4 2 2 2 | ACC 5 5 2 5 5 5 | AAC 4 4 6 4 4 4 | AGC 6 6 6 6 5 6
ATA 2 2 1 2 2 2 | ACA 7 7 7 7 7 7 | Lys AAA 2 2 3 2 2 2 | Arg AGA 6 6 5 6 6 6
Met ATG 8 8 7 8 8 8 | ACG 1 1 3 1 1 1 | AAG 2 2 1 2 2 2 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 10 10 5 10 10 10 | Ala GCT 5 5 4 5 5 5 | Asp GAT 1 1 0 1 1 1 | Gly GGT 5 5 3 5 5 5
GTC 3 3 4 3 3 3 | GCC 3 3 3 3 3 3 | GAC 5 5 3 5 5 5 | GGC 3 3 4 3 3 3
GTA 6 6 7 6 6 6 | GCA 5 5 6 5 5 5 | Glu GAA 3 3 5 3 3 3 | GGA 4 4 4 4 4 4
GTG 6 6 8 6 6 6 | GCG 0 0 0 0 0 0 | GAG 1 1 2 1 1 1 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C8
position 1: T:0.25333 C:0.16889 A:0.31111 G:0.26667
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.36000 C:0.22667 A:0.21778 G:0.19556
Average T:0.32741 C:0.20296 A:0.25333 G:0.21630
#2: C14
position 1: T:0.24889 C:0.17333 A:0.32444 G:0.25333
position 2: T:0.37333 C:0.21333 A:0.22667 G:0.18667
position 3: T:0.32000 C:0.21333 A:0.23111 G:0.23556
Average T:0.31407 C:0.20000 A:0.26074 G:0.22519
#3: C44
position 1: T:0.22667 C:0.18222 A:0.33333 G:0.25778
position 2: T:0.37333 C:0.21778 A:0.22222 G:0.18667
position 3: T:0.32000 C:0.21778 A:0.24444 G:0.21778
Average T:0.30667 C:0.20593 A:0.26667 G:0.22074
#4: C6
position 1: T:0.25333 C:0.16889 A:0.31111 G:0.26667
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.35556 C:0.23111 A:0.21778 G:0.19556
Average T:0.32593 C:0.20444 A:0.25333 G:0.21630
#5: C35
position 1: T:0.25333 C:0.16889 A:0.31111 G:0.26667
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.36444 C:0.22667 A:0.21778 G:0.19111
Average T:0.32889 C:0.20296 A:0.25333 G:0.21481
#6: C20
position 1: T:0.22667 C:0.18222 A:0.33333 G:0.25778
position 2: T:0.37333 C:0.21778 A:0.22222 G:0.18667
position 3: T:0.32444 C:0.21333 A:0.24444 G:0.21778
Average T:0.30815 C:0.20444 A:0.26667 G:0.22074
#7: C16
position 1: T:0.22667 C:0.18222 A:0.33333 G:0.25778
position 2: T:0.37333 C:0.21778 A:0.22222 G:0.18667
position 3: T:0.31556 C:0.22222 A:0.24444 G:0.21778
Average T:0.30519 C:0.20741 A:0.26667 G:0.22074
#8: C23
position 1: T:0.24889 C:0.16889 A:0.31111 G:0.27111
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.36444 C:0.22667 A:0.21778 G:0.19111
Average T:0.32741 C:0.20296 A:0.25333 G:0.21630
#9: C21
position 1: T:0.25333 C:0.16889 A:0.31111 G:0.26667
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.36000 C:0.22667 A:0.21778 G:0.19556
Average T:0.32741 C:0.20296 A:0.25333 G:0.21630
#10: C33
position 1: T:0.25333 C:0.16889 A:0.31111 G:0.26667
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.36889 C:0.22222 A:0.21778 G:0.19111
Average T:0.33037 C:0.20148 A:0.25333 G:0.21481
#11: C12
position 1: T:0.22222 C:0.18667 A:0.33333 G:0.25778
position 2: T:0.37333 C:0.21778 A:0.22222 G:0.18667
position 3: T:0.32000 C:0.21778 A:0.24444 G:0.21778
Average T:0.30519 C:0.20741 A:0.26667 G:0.22074
#12: C9
position 1: T:0.22667 C:0.18222 A:0.33333 G:0.25778
position 2: T:0.37333 C:0.21778 A:0.22222 G:0.18667
position 3: T:0.30222 C:0.22667 A:0.23556 G:0.23556
Average T:0.30074 C:0.20889 A:0.26370 G:0.22667
#13: C38
position 1: T:0.24889 C:0.16889 A:0.31556 G:0.26667
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.36000 C:0.22667 A:0.21778 G:0.19556
Average T:0.32593 C:0.20296 A:0.25481 G:0.21630
#14: C15
position 1: T:0.22667 C:0.18222 A:0.33333 G:0.25778
position 2: T:0.37333 C:0.21778 A:0.22222 G:0.18667
position 3: T:0.32000 C:0.21778 A:0.24444 G:0.21778
Average T:0.30667 C:0.20593 A:0.26667 G:0.22074
#15: C25
position 1: T:0.24889 C:0.16889 A:0.31111 G:0.27111
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.36444 C:0.22667 A:0.21778 G:0.19111
Average T:0.32741 C:0.20296 A:0.25333 G:0.21630
#16: C41
position 1: T:0.25333 C:0.16889 A:0.31111 G:0.26667
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.36000 C:0.22667 A:0.21778 G:0.19556
Average T:0.32741 C:0.20296 A:0.25333 G:0.21630
#17: C4
position 1: T:0.25333 C:0.16889 A:0.31111 G:0.26667
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.36000 C:0.22667 A:0.21778 G:0.19556
Average T:0.32741 C:0.20296 A:0.25333 G:0.21630
#18: C29
position 1: T:0.24889 C:0.16889 A:0.31556 G:0.26667
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.37333 C:0.21333 A:0.21778 G:0.19556
Average T:0.33037 C:0.19852 A:0.25481 G:0.21630
#19: C22
position 1: T:0.25333 C:0.16889 A:0.31111 G:0.26667
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.36444 C:0.22667 A:0.21778 G:0.19111
Average T:0.32889 C:0.20296 A:0.25333 G:0.21481
#20: C19
position 1: T:0.22667 C:0.18222 A:0.33333 G:0.25778
position 2: T:0.37333 C:0.21778 A:0.22222 G:0.18667
position 3: T:0.31556 C:0.22222 A:0.24444 G:0.21778
Average T:0.30519 C:0.20741 A:0.26667 G:0.22074
#21: C2
position 1: T:0.25333 C:0.16889 A:0.31111 G:0.26667
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.36000 C:0.22222 A:0.22222 G:0.19556
Average T:0.32741 C:0.20148 A:0.25481 G:0.21630
#22: C10
position 1: T:0.24000 C:0.16889 A:0.34222 G:0.24889
position 2: T:0.36444 C:0.20889 A:0.24889 G:0.17778
position 3: T:0.34667 C:0.24000 A:0.20000 G:0.21333
Average T:0.31704 C:0.20593 A:0.26370 G:0.21333
#23: C11
position 1: T:0.25333 C:0.17333 A:0.32444 G:0.24889
position 2: T:0.36889 C:0.22222 A:0.22222 G:0.18667
position 3: T:0.29778 C:0.22667 A:0.26667 G:0.20889
Average T:0.30667 C:0.20741 A:0.27111 G:0.21481
#24: C43
position 1: T:0.22667 C:0.18222 A:0.33333 G:0.25778
position 2: T:0.37333 C:0.21778 A:0.22222 G:0.18667
position 3: T:0.31556 C:0.22222 A:0.24444 G:0.21778
Average T:0.30519 C:0.20741 A:0.26667 G:0.22074
#25: C39
position 1: T:0.24889 C:0.16889 A:0.31556 G:0.26667
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.36444 C:0.22222 A:0.21778 G:0.19556
Average T:0.32741 C:0.20148 A:0.25481 G:0.21630
#26: C24
position 1: T:0.24889 C:0.16889 A:0.31556 G:0.26667
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.36000 C:0.22667 A:0.21778 G:0.19556
Average T:0.32593 C:0.20296 A:0.25481 G:0.21630
#27: C18
position 1: T:0.22667 C:0.18222 A:0.33333 G:0.25778
position 2: T:0.37333 C:0.21778 A:0.22222 G:0.18667
position 3: T:0.31556 C:0.22222 A:0.24444 G:0.21778
Average T:0.30519 C:0.20741 A:0.26667 G:0.22074
#28: C31
position 1: T:0.24889 C:0.16889 A:0.31556 G:0.26667
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.36000 C:0.22667 A:0.21778 G:0.19556
Average T:0.32593 C:0.20296 A:0.25481 G:0.21630
#29: C32
position 1: T:0.24889 C:0.16889 A:0.31556 G:0.26667
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.37333 C:0.21333 A:0.21778 G:0.19556
Average T:0.33037 C:0.19852 A:0.25481 G:0.21630
#30: C40
position 1: T:0.24889 C:0.16889 A:0.31556 G:0.26667
position 2: T:0.36889 C:0.21333 A:0.23111 G:0.18667
position 3: T:0.36000 C:0.22667 A:0.21778 G:0.19556
Average T:0.32593 C:0.20296 A:0.25481 G:0.21630
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 275 | Ser S TCT 82 | Tyr Y TAT 120 | Cys C TGT 19
TTC 180 | TCC 73 | TAC 174 | TGC 0
Leu L TTA 13 | TCA 135 | *** * TAA 0 | *** * TGA 0
TTG 239 | TCG 3 | TAG 0 | Trp W TGG 329
------------------------------------------------------------------------------
Leu L CTT 281 | Pro P CCT 66 | His H CAT 121 | Arg R CGT 32
CTC 33 | CCC 46 | CAC 65 | CGC 1
CTA 66 | CCA 58 | Gln Q CAA 108 | CGA 90
CTG 70 | CCG 41 | CAG 92 | CGG 0
------------------------------------------------------------------------------
Ile I ATT 242 | Thr T ACT 181 | Asn N AAT 302 | Ser S AGT 75
ATC 86 | ACC 117 | AAC 143 | AGC 175
ATA 51 | ACA 205 | Lys K AAA 72 | Arg R AGA 157
Met M ATG 228 | ACG 51 | AAG 48 | AGG 32
------------------------------------------------------------------------------
Val V GTT 246 | Ala A GCT 137 | Asp D GAT 20 | Gly G GGT 129
GTC 101 | GCC 93 | GAC 125 | GGC 97
GTA 188 | GCA 162 | Glu E GAA 109 | GGA 119
GTG 200 | GCG 0 | GAG 44 | GGG 3
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.24326 C:0.17333 A:0.32074 G:0.26267
position 2: T:0.37022 C:0.21481 A:0.22859 G:0.18637
position 3: T:0.34489 C:0.22356 A:0.22711 G:0.20444
Average T:0.31946 C:0.20390 A:0.25881 G:0.21783
Model 1: NearlyNeutral (2 categories)
TREE # 1: (22, (21, (((9, (19, 10, 5), ((8, 15), 26, (18, 29), 28, 13, 25, 30), 16), 17), 4, 1)), ((23, 2), (((11, (14, 7, 27, 20, 24, 3)), 6), 12))); MP score: 235
check convergence..
lnL(ntime: 44 np: 47): -2082.031067 +0.000000
31..22 31..32 32..21 32..33 33..34 34..35 35..9 35..36 36..19 36..10 36..5 35..37 37..38 38..8 38..15 37..26 37..39 39..18 39..29 37..28 37..13 37..25 37..30 35..16 34..17 33..4 33..1 31..40 40..41 41..23 41..2 40..42 42..43 43..44 44..11 44..45 45..14 45..7 45..27 45..20 45..24 45..3 43..6 42..12
0.670095 0.254286 0.000554 0.032386 0.004654 0.009334 0.000004 0.004664 0.000004 0.004661 0.000004 0.009329 0.009360 0.000004 0.000004 0.000004 0.014032 0.000004 0.000004 0.000004 0.000004 0.004653 0.000004 0.000004 0.000004 0.000004 0.004653 0.140346 0.030467 0.187860 0.113735 0.019434 0.026705 0.004618 0.004578 0.004577 0.004586 0.000004 0.000004 0.000004 0.000004 0.004582 0.009175 0.074490 2.080529 0.875418 0.026275
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.647887
(22: 0.670095, (21: 0.000554, (((9: 0.000004, (19: 0.000004, 10: 0.004661, 5: 0.000004): 0.004664, ((8: 0.000004, 15: 0.000004): 0.009360, 26: 0.000004, (18: 0.000004, 29: 0.000004): 0.014032, 28: 0.000004, 13: 0.000004, 25: 0.004653, 30: 0.000004): 0.009329, 16: 0.000004): 0.009334, 17: 0.000004): 0.004654, 4: 0.000004, 1: 0.004653): 0.032386): 0.254286, ((23: 0.187860, 2: 0.113735): 0.030467, (((11: 0.004578, (14: 0.004586, 7: 0.000004, 27: 0.000004, 20: 0.000004, 24: 0.000004, 3: 0.004582): 0.004577): 0.004618, 6: 0.009175): 0.026705, 12: 0.074490): 0.019434): 0.140346);
(C10: 0.670095, (C2: 0.000554, (((C21: 0.000004, (C22: 0.000004, C33: 0.004661, C35: 0.000004): 0.004664, ((C23: 0.000004, C25: 0.000004): 0.009360, C24: 0.000004, (C29: 0.000004, C32: 0.000004): 0.014032, C31: 0.000004, C38: 0.000004, C39: 0.004653, C40: 0.000004): 0.009329, C41: 0.000004): 0.009334, C4: 0.000004): 0.004654, C6: 0.000004, C8: 0.004653): 0.032386): 0.254286, ((C11: 0.187860, C14: 0.113735): 0.030467, (((C12: 0.004578, (C15: 0.004586, C16: 0.000004, C18: 0.000004, C19: 0.000004, C43: 0.000004, C44: 0.004582): 0.004577): 0.004618, C20: 0.009175): 0.026705, C9: 0.074490): 0.019434): 0.140346);
Detailed output identifying parameters
kappa (ts/tv) = 2.08053
MLEs of dN/dS (w) for site classes (K=2)
p: 0.87542 0.12458
w: 0.02628 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..22 0.670 497.2 177.8 0.1476 0.0886 0.6003 44.1 106.7
31..32 0.254 497.2 177.8 0.1476 0.0336 0.2278 16.7 40.5
32..21 0.001 497.2 177.8 0.1476 0.0001 0.0005 0.0 0.1
32..33 0.032 497.2 177.8 0.1476 0.0043 0.0290 2.1 5.2
33..34 0.005 497.2 177.8 0.1476 0.0006 0.0042 0.3 0.7
34..35 0.009 497.2 177.8 0.1476 0.0012 0.0084 0.6 1.5
35..9 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
35..36 0.005 497.2 177.8 0.1476 0.0006 0.0042 0.3 0.7
36..19 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
36..10 0.005 497.2 177.8 0.1476 0.0006 0.0042 0.3 0.7
36..5 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
35..37 0.009 497.2 177.8 0.1476 0.0012 0.0084 0.6 1.5
37..38 0.009 497.2 177.8 0.1476 0.0012 0.0084 0.6 1.5
38..8 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
38..15 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
37..26 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
37..39 0.014 497.2 177.8 0.1476 0.0019 0.0126 0.9 2.2
39..18 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
39..29 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
37..28 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
37..13 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
37..25 0.005 497.2 177.8 0.1476 0.0006 0.0042 0.3 0.7
37..30 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
35..16 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
34..17 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
33..4 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
33..1 0.005 497.2 177.8 0.1476 0.0006 0.0042 0.3 0.7
31..40 0.140 497.2 177.8 0.1476 0.0186 0.1257 9.2 22.4
40..41 0.030 497.2 177.8 0.1476 0.0040 0.0273 2.0 4.9
41..23 0.188 497.2 177.8 0.1476 0.0248 0.1683 12.4 29.9
41..2 0.114 497.2 177.8 0.1476 0.0150 0.1019 7.5 18.1
40..42 0.019 497.2 177.8 0.1476 0.0026 0.0174 1.3 3.1
42..43 0.027 497.2 177.8 0.1476 0.0035 0.0239 1.8 4.3
43..44 0.005 497.2 177.8 0.1476 0.0006 0.0041 0.3 0.7
44..11 0.005 497.2 177.8 0.1476 0.0006 0.0041 0.3 0.7
44..45 0.005 497.2 177.8 0.1476 0.0006 0.0041 0.3 0.7
45..14 0.005 497.2 177.8 0.1476 0.0006 0.0041 0.3 0.7
45..7 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
45..27 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
45..20 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
45..24 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
45..3 0.005 497.2 177.8 0.1476 0.0006 0.0041 0.3 0.7
43..6 0.009 497.2 177.8 0.1476 0.0012 0.0082 0.6 1.5
42..12 0.074 497.2 177.8 0.1476 0.0098 0.0667 4.9 11.9
Time used: 3:29
Model 2: PositiveSelection (3 categories)
TREE # 1: (22, (21, (((9, (19, 10, 5), ((8, 15), 26, (18, 29), 28, 13, 25, 30), 16), 17), 4, 1)), ((23, 2), (((11, (14, 7, 27, 20, 24, 3)), 6), 12))); MP score: 235
lnL(ntime: 44 np: 49): -2082.031067 +0.000000
31..22 31..32 32..21 32..33 33..34 34..35 35..9 35..36 36..19 36..10 36..5 35..37 37..38 38..8 38..15 37..26 37..39 39..18 39..29 37..28 37..13 37..25 37..30 35..16 34..17 33..4 33..1 31..40 40..41 41..23 41..2 40..42 42..43 43..44 44..11 44..45 45..14 45..7 45..27 45..20 45..24 45..3 43..6 42..12
0.670095 0.254286 0.000554 0.032386 0.004654 0.009334 0.000004 0.004664 0.000004 0.004661 0.000004 0.009330 0.009360 0.000004 0.000004 0.000004 0.014032 0.000004 0.000004 0.000004 0.000004 0.004653 0.000004 0.000004 0.000004 0.000004 0.004653 0.140346 0.030467 0.187860 0.113735 0.019434 0.026705 0.004618 0.004578 0.004577 0.004586 0.000004 0.000004 0.000004 0.000004 0.004582 0.009175 0.074490 2.080529 0.875418 0.080383 0.026275 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.647887
(22: 0.670095, (21: 0.000554, (((9: 0.000004, (19: 0.000004, 10: 0.004661, 5: 0.000004): 0.004664, ((8: 0.000004, 15: 0.000004): 0.009360, 26: 0.000004, (18: 0.000004, 29: 0.000004): 0.014032, 28: 0.000004, 13: 0.000004, 25: 0.004653, 30: 0.000004): 0.009330, 16: 0.000004): 0.009334, 17: 0.000004): 0.004654, 4: 0.000004, 1: 0.004653): 0.032386): 0.254286, ((23: 0.187860, 2: 0.113735): 0.030467, (((11: 0.004578, (14: 0.004586, 7: 0.000004, 27: 0.000004, 20: 0.000004, 24: 0.000004, 3: 0.004582): 0.004577): 0.004618, 6: 0.009175): 0.026705, 12: 0.074490): 0.019434): 0.140346);
(C10: 0.670095, (C2: 0.000554, (((C21: 0.000004, (C22: 0.000004, C33: 0.004661, C35: 0.000004): 0.004664, ((C23: 0.000004, C25: 0.000004): 0.009360, C24: 0.000004, (C29: 0.000004, C32: 0.000004): 0.014032, C31: 0.000004, C38: 0.000004, C39: 0.004653, C40: 0.000004): 0.009330, C41: 0.000004): 0.009334, C4: 0.000004): 0.004654, C6: 0.000004, C8: 0.004653): 0.032386): 0.254286, ((C11: 0.187860, C14: 0.113735): 0.030467, (((C12: 0.004578, (C15: 0.004586, C16: 0.000004, C18: 0.000004, C19: 0.000004, C43: 0.000004, C44: 0.004582): 0.004577): 0.004618, C20: 0.009175): 0.026705, C9: 0.074490): 0.019434): 0.140346);
Detailed output identifying parameters
kappa (ts/tv) = 2.08053
MLEs of dN/dS (w) for site classes (K=3)
p: 0.87542 0.08038 0.04420
w: 0.02628 1.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..22 0.670 497.2 177.8 0.1476 0.0886 0.6003 44.1 106.7
31..32 0.254 497.2 177.8 0.1476 0.0336 0.2278 16.7 40.5
32..21 0.001 497.2 177.8 0.1476 0.0001 0.0005 0.0 0.1
32..33 0.032 497.2 177.8 0.1476 0.0043 0.0290 2.1 5.2
33..34 0.005 497.2 177.8 0.1476 0.0006 0.0042 0.3 0.7
34..35 0.009 497.2 177.8 0.1476 0.0012 0.0084 0.6 1.5
35..9 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
35..36 0.005 497.2 177.8 0.1476 0.0006 0.0042 0.3 0.7
36..19 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
36..10 0.005 497.2 177.8 0.1476 0.0006 0.0042 0.3 0.7
36..5 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
35..37 0.009 497.2 177.8 0.1476 0.0012 0.0084 0.6 1.5
37..38 0.009 497.2 177.8 0.1476 0.0012 0.0084 0.6 1.5
38..8 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
38..15 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
37..26 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
37..39 0.014 497.2 177.8 0.1476 0.0019 0.0126 0.9 2.2
39..18 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
39..29 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
37..28 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
37..13 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
37..25 0.005 497.2 177.8 0.1476 0.0006 0.0042 0.3 0.7
37..30 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
35..16 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
34..17 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
33..4 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
33..1 0.005 497.2 177.8 0.1476 0.0006 0.0042 0.3 0.7
31..40 0.140 497.2 177.8 0.1476 0.0186 0.1257 9.2 22.4
40..41 0.030 497.2 177.8 0.1476 0.0040 0.0273 2.0 4.9
41..23 0.188 497.2 177.8 0.1476 0.0248 0.1683 12.4 29.9
41..2 0.114 497.2 177.8 0.1476 0.0150 0.1019 7.5 18.1
40..42 0.019 497.2 177.8 0.1476 0.0026 0.0174 1.3 3.1
42..43 0.027 497.2 177.8 0.1476 0.0035 0.0239 1.8 4.3
43..44 0.005 497.2 177.8 0.1476 0.0006 0.0041 0.3 0.7
44..11 0.005 497.2 177.8 0.1476 0.0006 0.0041 0.3 0.7
44..45 0.005 497.2 177.8 0.1476 0.0006 0.0041 0.3 0.7
45..14 0.005 497.2 177.8 0.1476 0.0006 0.0041 0.3 0.7
45..7 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
45..27 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
45..20 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
45..24 0.000 497.2 177.8 0.1476 0.0000 0.0000 0.0 0.0
45..3 0.005 497.2 177.8 0.1476 0.0006 0.0041 0.3 0.7
43..6 0.009 497.2 177.8 0.1476 0.0012 0.0082 0.6 1.5
42..12 0.074 497.2 177.8 0.1476 0.0098 0.0667 4.9 11.9
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C8)
Pr(w>1) post mean +- SE for w
2 S 0.527 1.297 +- 0.398
3 N 0.603 1.354 +- 0.384
5 N 0.631 1.376 +- 0.406
72 S 0.597 1.347 +- 0.386
169 T 0.518 1.287 +- 0.374
212 M 0.688 1.415 +- 0.414
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.911 0.073 0.009 0.003 0.001 0.001 0.001 0.001 0.000 0.000
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.096
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.239 0.662
sum of density on p0-p1 = 1.000000
Time used: 11:42
Model 7: beta (10 categories)
TREE # 1: (22, (21, (((9, (19, 10, 5), ((8, 15), 26, (18, 29), 28, 13, 25, 30), 16), 17), 4, 1)), ((23, 2), (((11, (14, 7, 27, 20, 24, 3)), 6), 12))); MP score: 235
check convergence..
lnL(ntime: 44 np: 47): -2079.659619 +0.000000
31..22 31..32 32..21 32..33 33..34 34..35 35..9 35..36 36..19 36..10 36..5 35..37 37..38 38..8 38..15 37..26 37..39 39..18 39..29 37..28 37..13 37..25 37..30 35..16 34..17 33..4 33..1 31..40 40..41 41..23 41..2 40..42 42..43 43..44 44..11 44..45 45..14 45..7 45..27 45..20 45..24 45..3 43..6 42..12
0.667266 0.247160 0.000247 0.032939 0.004687 0.009403 0.000004 0.004701 0.000004 0.004698 0.000004 0.009401 0.009432 0.000004 0.000004 0.000004 0.014141 0.000004 0.000004 0.000004 0.000004 0.004689 0.000004 0.000004 0.000004 0.000004 0.004686 0.147751 0.030501 0.187795 0.114174 0.019028 0.026687 0.004632 0.004590 0.004589 0.004599 0.000004 0.000004 0.000004 0.000004 0.004595 0.009201 0.074794 2.017593 0.086574 0.608538
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.646459
(22: 0.667266, (21: 0.000247, (((9: 0.000004, (19: 0.000004, 10: 0.004698, 5: 0.000004): 0.004701, ((8: 0.000004, 15: 0.000004): 0.009432, 26: 0.000004, (18: 0.000004, 29: 0.000004): 0.014141, 28: 0.000004, 13: 0.000004, 25: 0.004689, 30: 0.000004): 0.009401, 16: 0.000004): 0.009403, 17: 0.000004): 0.004687, 4: 0.000004, 1: 0.004686): 0.032939): 0.247160, ((23: 0.187795, 2: 0.114174): 0.030501, (((11: 0.004590, (14: 0.004599, 7: 0.000004, 27: 0.000004, 20: 0.000004, 24: 0.000004, 3: 0.004595): 0.004589): 0.004632, 6: 0.009201): 0.026687, 12: 0.074794): 0.019028): 0.147751);
(C10: 0.667266, (C2: 0.000247, (((C21: 0.000004, (C22: 0.000004, C33: 0.004698, C35: 0.000004): 0.004701, ((C23: 0.000004, C25: 0.000004): 0.009432, C24: 0.000004, (C29: 0.000004, C32: 0.000004): 0.014141, C31: 0.000004, C38: 0.000004, C39: 0.004689, C40: 0.000004): 0.009401, C41: 0.000004): 0.009403, C4: 0.000004): 0.004687, C6: 0.000004, C8: 0.004686): 0.032939): 0.247160, ((C11: 0.187795, C14: 0.114174): 0.030501, (((C12: 0.004590, (C15: 0.004599, C16: 0.000004, C18: 0.000004, C19: 0.000004, C43: 0.000004, C44: 0.004595): 0.004589): 0.004632, C20: 0.009201): 0.026687, C9: 0.074794): 0.019028): 0.147751);
Detailed output identifying parameters
kappa (ts/tv) = 2.01759
Parameters in M7 (beta):
p = 0.08657 q = 0.60854
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00000 0.00000 0.00000 0.00001 0.00023 0.00236 0.01619 0.08246 0.31710 0.81876
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..22 0.667 498.0 177.0 0.1237 0.0778 0.6291 38.8 111.4
31..32 0.247 498.0 177.0 0.1237 0.0288 0.2330 14.4 41.3
32..21 0.000 498.0 177.0 0.1237 0.0000 0.0002 0.0 0.0
32..33 0.033 498.0 177.0 0.1237 0.0038 0.0311 1.9 5.5
33..34 0.005 498.0 177.0 0.1237 0.0005 0.0044 0.3 0.8
34..35 0.009 498.0 177.0 0.1237 0.0011 0.0089 0.5 1.6
35..9 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
35..36 0.005 498.0 177.0 0.1237 0.0005 0.0044 0.3 0.8
36..19 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
36..10 0.005 498.0 177.0 0.1237 0.0005 0.0044 0.3 0.8
36..5 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
35..37 0.009 498.0 177.0 0.1237 0.0011 0.0089 0.5 1.6
37..38 0.009 498.0 177.0 0.1237 0.0011 0.0089 0.5 1.6
38..8 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
38..15 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
37..26 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
37..39 0.014 498.0 177.0 0.1237 0.0016 0.0133 0.8 2.4
39..18 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
39..29 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
37..28 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
37..13 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
37..25 0.005 498.0 177.0 0.1237 0.0005 0.0044 0.3 0.8
37..30 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
35..16 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
34..17 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
33..4 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
33..1 0.005 498.0 177.0 0.1237 0.0005 0.0044 0.3 0.8
31..40 0.148 498.0 177.0 0.1237 0.0172 0.1393 8.6 24.7
40..41 0.031 498.0 177.0 0.1237 0.0036 0.0288 1.8 5.1
41..23 0.188 498.0 177.0 0.1237 0.0219 0.1771 10.9 31.3
41..2 0.114 498.0 177.0 0.1237 0.0133 0.1076 6.6 19.1
40..42 0.019 498.0 177.0 0.1237 0.0022 0.0179 1.1 3.2
42..43 0.027 498.0 177.0 0.1237 0.0031 0.0252 1.6 4.5
43..44 0.005 498.0 177.0 0.1237 0.0005 0.0044 0.3 0.8
44..11 0.005 498.0 177.0 0.1237 0.0005 0.0043 0.3 0.8
44..45 0.005 498.0 177.0 0.1237 0.0005 0.0043 0.3 0.8
45..14 0.005 498.0 177.0 0.1237 0.0005 0.0043 0.3 0.8
45..7 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
45..27 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
45..20 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
45..24 0.000 498.0 177.0 0.1237 0.0000 0.0000 0.0 0.0
45..3 0.005 498.0 177.0 0.1237 0.0005 0.0043 0.3 0.8
43..6 0.009 498.0 177.0 0.1237 0.0011 0.0087 0.5 1.5
42..12 0.075 498.0 177.0 0.1237 0.0087 0.0705 4.3 12.5
Time used: 31:45
Model 8: beta&w>1 (11 categories)
TREE # 1: (22, (21, (((9, (19, 10, 5), ((8, 15), 26, (18, 29), 28, 13, 25, 30), 16), 17), 4, 1)), ((23, 2), (((11, (14, 7, 27, 20, 24, 3)), 6), 12))); MP score: 235
lnL(ntime: 44 np: 49): -2079.629114 +0.000000
31..22 31..32 32..21 32..33 33..34 34..35 35..9 35..36 36..19 36..10 36..5 35..37 37..38 38..8 38..15 37..26 37..39 39..18 39..29 37..28 37..13 37..25 37..30 35..16 34..17 33..4 33..1 31..40 40..41 41..23 41..2 40..42 42..43 43..44 44..11 44..45 45..14 45..7 45..27 45..20 45..24 45..3 43..6 42..12
0.670716 0.247835 0.000289 0.032787 0.004671 0.009371 0.000004 0.004684 0.000004 0.004682 0.000004 0.009369 0.009400 0.000004 0.000004 0.000004 0.014092 0.000004 0.000004 0.000004 0.000004 0.004673 0.000004 0.000004 0.000004 0.000004 0.004670 0.147371 0.030678 0.188006 0.114144 0.018898 0.026637 0.004628 0.004583 0.004583 0.004592 0.000004 0.000004 0.000004 0.000004 0.004589 0.009184 0.074706 2.027284 0.952182 0.112992 1.290080 1.103749
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.649911
(22: 0.670716, (21: 0.000289, (((9: 0.000004, (19: 0.000004, 10: 0.004682, 5: 0.000004): 0.004684, ((8: 0.000004, 15: 0.000004): 0.009400, 26: 0.000004, (18: 0.000004, 29: 0.000004): 0.014092, 28: 0.000004, 13: 0.000004, 25: 0.004673, 30: 0.000004): 0.009369, 16: 0.000004): 0.009371, 17: 0.000004): 0.004671, 4: 0.000004, 1: 0.004670): 0.032787): 0.247835, ((23: 0.188006, 2: 0.114144): 0.030678, (((11: 0.004583, (14: 0.004592, 7: 0.000004, 27: 0.000004, 20: 0.000004, 24: 0.000004, 3: 0.004589): 0.004583): 0.004628, 6: 0.009184): 0.026637, 12: 0.074706): 0.018898): 0.147371);
(C10: 0.670716, (C2: 0.000289, (((C21: 0.000004, (C22: 0.000004, C33: 0.004682, C35: 0.000004): 0.004684, ((C23: 0.000004, C25: 0.000004): 0.009400, C24: 0.000004, (C29: 0.000004, C32: 0.000004): 0.014092, C31: 0.000004, C38: 0.000004, C39: 0.004673, C40: 0.000004): 0.009369, C41: 0.000004): 0.009371, C4: 0.000004): 0.004671, C6: 0.000004, C8: 0.004670): 0.032787): 0.247835, ((C11: 0.188006, C14: 0.114144): 0.030678, (((C12: 0.004583, (C15: 0.004592, C16: 0.000004, C18: 0.000004, C19: 0.000004, C43: 0.000004, C44: 0.004589): 0.004583): 0.004628, C20: 0.009184): 0.026637, C9: 0.074706): 0.018898): 0.147371);
Detailed output identifying parameters
kappa (ts/tv) = 2.02728
Parameters in M8 (beta&w>1):
p0 = 0.95218 p = 0.11299 q = 1.29008
(p1 = 0.04782) w = 1.10375
MLEs of dN/dS (w) for site classes (K=11)
p: 0.09522 0.09522 0.09522 0.09522 0.09522 0.09522 0.09522 0.09522 0.09522 0.09522 0.04782
w: 0.00000 0.00000 0.00000 0.00006 0.00059 0.00348 0.01531 0.05489 0.17157 0.50931 1.10375
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..22 0.671 497.8 177.2 0.1247 0.0787 0.6308 39.2 111.8
31..32 0.248 497.8 177.2 0.1247 0.0291 0.2331 14.5 41.3
32..21 0.000 497.8 177.2 0.1247 0.0000 0.0003 0.0 0.0
32..33 0.033 497.8 177.2 0.1247 0.0038 0.0308 1.9 5.5
33..34 0.005 497.8 177.2 0.1247 0.0005 0.0044 0.3 0.8
34..35 0.009 497.8 177.2 0.1247 0.0011 0.0088 0.5 1.6
35..9 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
35..36 0.005 497.8 177.2 0.1247 0.0005 0.0044 0.3 0.8
36..19 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
36..10 0.005 497.8 177.2 0.1247 0.0005 0.0044 0.3 0.8
36..5 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
35..37 0.009 497.8 177.2 0.1247 0.0011 0.0088 0.5 1.6
37..38 0.009 497.8 177.2 0.1247 0.0011 0.0088 0.5 1.6
38..8 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
38..15 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
37..26 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
37..39 0.014 497.8 177.2 0.1247 0.0017 0.0133 0.8 2.3
39..18 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
39..29 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
37..28 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
37..13 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
37..25 0.005 497.8 177.2 0.1247 0.0005 0.0044 0.3 0.8
37..30 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
35..16 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
34..17 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
33..4 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
33..1 0.005 497.8 177.2 0.1247 0.0005 0.0044 0.3 0.8
31..40 0.147 497.8 177.2 0.1247 0.0173 0.1386 8.6 24.6
40..41 0.031 497.8 177.2 0.1247 0.0036 0.0289 1.8 5.1
41..23 0.188 497.8 177.2 0.1247 0.0220 0.1768 11.0 31.3
41..2 0.114 497.8 177.2 0.1247 0.0134 0.1074 6.7 19.0
40..42 0.019 497.8 177.2 0.1247 0.0022 0.0178 1.1 3.1
42..43 0.027 497.8 177.2 0.1247 0.0031 0.0251 1.6 4.4
43..44 0.005 497.8 177.2 0.1247 0.0005 0.0044 0.3 0.8
44..11 0.005 497.8 177.2 0.1247 0.0005 0.0043 0.3 0.8
44..45 0.005 497.8 177.2 0.1247 0.0005 0.0043 0.3 0.8
45..14 0.005 497.8 177.2 0.1247 0.0005 0.0043 0.3 0.8
45..7 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
45..27 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
45..20 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
45..24 0.000 497.8 177.2 0.1247 0.0000 0.0000 0.0 0.0
45..3 0.005 497.8 177.2 0.1247 0.0005 0.0043 0.3 0.8
43..6 0.009 497.8 177.2 0.1247 0.0011 0.0086 0.5 1.5
42..12 0.075 497.8 177.2 0.1247 0.0088 0.0703 4.4 12.4
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C8)
Pr(w>1) post mean +- SE for w
2 S 0.559 0.829
3 N 0.716 0.932
5 N 0.741 0.947
72 S 0.686 0.912
169 T 0.561 0.831
212 M 0.844 1.010
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C8)
Pr(w>1) post mean +- SE for w
2 S 0.662 1.223 +- 0.541
3 N 0.809 1.392 +- 0.446
4 D 0.555 1.096 +- 0.556
5 N 0.837 1.421 +- 0.431
42 L 0.563 1.099 +- 0.571
72 S 0.789 1.367 +- 0.467
169 T 0.654 1.214 +- 0.536
212 M 0.905 1.489 +- 0.370
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000
p : 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.000 0.001 0.015 0.058 0.127 0.204 0.272 0.322
ws: 0.933 0.063 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000
Time used: 1:10:03
Model 1: NearlyNeutral -2082.031067 Model 2: PositiveSelection -2082.031067 Model 7: beta -2079.659619 Model 8: beta&w>1 -2079.629114 Model 2 vs 1 0 Model 8 vs 7 .061010
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
