--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -797.17 -839.79
2 -799.19 -834.06
--------------------------------------
TOTAL -797.74 -839.10
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.625090 0.009972 0.450834 0.826889 0.616595 1118.23 1141.12 1.000
r(A<->C){all} 0.118538 0.001743 0.042614 0.201875 0.115312 561.90 580.62 1.000
r(A<->G){all} 0.349618 0.003786 0.234982 0.477647 0.348056 442.23 492.09 1.001
r(A<->T){all} 0.082693 0.000633 0.039826 0.135408 0.079446 695.58 707.90 1.000
r(C<->G){all} 0.057952 0.001396 0.000984 0.128877 0.051685 317.78 385.54 1.001
r(C<->T){all} 0.334969 0.003871 0.223381 0.463935 0.332549 419.55 428.03 1.000
r(G<->T){all} 0.056231 0.000703 0.011966 0.110081 0.052500 625.52 646.37 1.001
pi(A){all} 0.290273 0.000699 0.237966 0.340017 0.290677 885.86 953.84 1.000
pi(C){all} 0.172348 0.000458 0.130792 0.213566 0.171984 937.67 971.73 1.000
pi(G){all} 0.154383 0.000430 0.115777 0.197246 0.153665 883.85 956.49 1.001
pi(T){all} 0.382995 0.000873 0.324079 0.438182 0.383014 907.27 942.53 1.000
alpha{1,2} 0.581751 0.172991 0.159159 1.327740 0.468631 912.88 933.08 1.000
alpha{3} 2.606183 1.609897 0.698327 5.058081 2.335589 1365.20 1367.83 1.000
pinvar{all} 0.122708 0.007913 0.000063 0.290919 0.104895 965.80 1035.83 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -712.952919
Model 2: PositiveSelection -712.952919
Model 7: beta -709.304528
Model 8: beta&w>1 -709.304655
Model 2 vs 1 0
Model 8 vs 7 -.000254
-- Starting log on Fri Nov 04 00:59:53 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/229E_human_USA_932_72_1993_E_AGT21362_1_1993_02_22_USA_Human_Human_coronavirus_229E.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.07 sec, SCORE=1000, Nseq=43, Len=77
C1 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C2 MFLKLVDDHALVVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C3 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C4 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C5 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C6 MFLKLVDDHALVVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C7 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C8 MFLKLVDDHAIIVNVILWLIVLLVVLLICITLIKLIKLCFTCHMFCSRTV
C9 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTV
C10 MFLKLVDDHAIIVNVLLWLIVLLVVLLICITLIKLIKLCFTCHMFCSRTV
C11 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTV
C12 MFLKLVDDHALVVNVLLWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C13 MFLKLVDDHALVVNVLLWCVVLIVVLLVCITIIKLIKLCFTCHMFCNRTV
C14 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C15 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTV
C16 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C17 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C18 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C19 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C20 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTF
C21 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C22 MFLKLVDDHALIVNVLIWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C23 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C24 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C25 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C26 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C27 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C28 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C29 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C30 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C31 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C32 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C33 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C34 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C35 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C36 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C37 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C38 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C39 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C40 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C41 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C42 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C43 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
**********::***::* :**:*:**:***:**************.:*.
C1 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C2 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C3 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C4 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C5 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C6 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C7 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C8 YDPVRNAYHIYQSYMHIDPFPK-FPDV
C9 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C10 YNPVRNAYHIYQSYMHIDPFPT--FDV
C11 YGPIKNVYHIYQSYMHIDPFPTQIIDV
C12 YGPIKNVYHIYQSYMHIDPFPKQVISV
C13 YGPIKNVYHIYQSYMHIDPFPKQIIDV
C14 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C15 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C16 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C17 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C18 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C19 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C20 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C21 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C22 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C23 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C24 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C25 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C26 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C27 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C28 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C29 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C30 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C31 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C32 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C33 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C34 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C35 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C36 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C37 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C38 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C39 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C40 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C41 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C42 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C43 YGPIKNVYHIYQSYMHIDPFPRQIIDV
*.*::*.************** ..
-- Starting log on Fri Nov 04 01:00:39 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/229E_human_USA_932_72_1993_E_AGT21362_1_1993_02_22_USA_Human_Human_coronavirus_229E.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.19 sec, SCORE=996, Nseq=43, Len=77
C1 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C2 MFLKLVDDHALVVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C3 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C4 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C5 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C6 MFLKLVDDHALVVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C7 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C8 MFLKLVDDHAIIVNVILWLIVLLVVLLICITLIKLIKLCFTCHMFCSRTV
C9 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTV
C10 MFLKLVDDHAIIVNVLLWLIVLLVVLLICITLIKLIKLCFTCHMFCSRTV
C11 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTV
C12 MFLKLVDDHALVVNVLLWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C13 MFLKLVDDHALVVNVLLWCVVLIVVLLVCITIIKLIKLCFTCHMFCNRTV
C14 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C15 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTV
C16 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C17 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C18 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C19 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C20 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTF
C21 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C22 MFLKLVDDHALIVNVLIWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C23 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C24 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C25 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C26 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C27 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C28 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C29 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C30 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C31 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C32 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C33 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C34 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C35 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C36 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C37 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C38 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C39 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C40 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C41 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C42 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C43 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
**********::***::* :**:*:**:***:**************.:*.
C1 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C2 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C3 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C4 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C5 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C6 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C7 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C8 YDPVRNAYHIYQSYMHIDPFPK-FPDV
C9 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C10 YNPVRNAYHIYQSYMHIDPFPT--FDV
C11 YGPIKNVYHIYQSYMHIDPFPTQIIDV
C12 YGPIKNVYHIYQSYMHIDPFPKQVISV
C13 YGPIKNVYHIYQSYMHIDPFPKQIIDV
C14 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C15 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C16 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C17 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C18 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C19 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C20 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C21 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C22 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C23 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C24 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C25 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C26 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C27 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C28 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C29 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C30 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C31 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C32 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C33 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C34 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C35 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C36 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C37 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C38 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C39 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C40 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C41 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C42 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C43 YGPIKNVYHIYQSYMHIDPFPRQIIDV
*.*::*.************** ..
-- Starting log on Fri Nov 04 01:27:04 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/229E_human_USA_932_72_1993_E_AGT21362_1_1993_02_22_USA_Human_Human_coronavirus_229E.result/gapped_alignment/codeml,229E_human_USA_932_72_1993_E_AGT21362_1_1993_02_22_USA_Human_Human_coronavirus_229E.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 30 taxa and 231 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C1
Taxon 2 -> C11
Taxon 3 -> C12
Taxon 4 -> C14
Taxon 5 -> C15
Taxon 6 -> C17
Taxon 7 -> C18
Taxon 8 -> C19
Taxon 9 -> C2
Taxon 10 -> C20
Taxon 11 -> C21
Taxon 12 -> C22
Taxon 13 -> C24
Taxon 14 -> C25
Taxon 15 -> C27
Taxon 16 -> C29
Taxon 17 -> C3
Taxon 18 -> C31
Taxon 19 -> C32
Taxon 20 -> C33
Taxon 21 -> C34
Taxon 22 -> C36
Taxon 23 -> C39
Taxon 24 -> C4
Taxon 25 -> C42
Taxon 26 -> C5
Taxon 27 -> C6
Taxon 28 -> C7
Taxon 29 -> C8
Taxon 30 -> C9
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1667525233
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 36262966
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 6891716140
Seed = 931412313
Swapseed = 1667525233
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 21 unique site patterns
Division 2 has 13 unique site patterns
Division 3 has 43 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -2068.269606 -- 82.122948
Chain 2 -- -2014.633208 -- 82.122948
Chain 3 -- -1787.223064 -- 82.122948
Chain 4 -- -2002.716719 -- 82.122948
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -1681.649202 -- 82.122948
Chain 2 -- -1794.071945 -- 82.122948
Chain 3 -- -2092.211633 -- 82.122948
Chain 4 -- -2013.354411 -- 82.122948
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-2068.270] (-2014.633) (-1787.223) (-2002.717) * [-1681.649] (-1794.072) (-2092.212) (-2013.354)
1000 -- (-964.703) (-951.831) [-892.604] (-903.166) * (-928.169) (-936.471) (-966.456) [-903.071] -- 0:16:39
2000 -- (-844.039) (-918.854) (-829.659) [-823.487] * [-843.859] (-873.843) (-835.963) (-832.159) -- 0:08:19
3000 -- (-833.746) (-879.153) [-817.868] (-814.962) * [-819.981] (-839.406) (-837.526) (-815.276) -- 0:11:04
4000 -- (-843.157) (-850.904) [-808.048] (-813.052) * [-799.913] (-828.965) (-841.234) (-825.935) -- 0:12:27
5000 -- (-817.408) (-822.671) [-805.316] (-811.559) * (-813.841) [-816.656] (-814.483) (-817.775) -- 0:09:57
Average standard deviation of split frequencies: 0.080381
6000 -- (-802.460) (-805.971) [-803.435] (-820.527) * (-829.646) (-817.920) [-815.148] (-814.326) -- 0:11:02
7000 -- (-798.510) [-811.636] (-828.719) (-840.891) * (-824.490) (-818.569) (-817.209) [-810.615] -- 0:11:49
8000 -- (-816.303) [-805.520] (-821.997) (-843.147) * [-808.830] (-848.660) (-822.721) (-812.758) -- 0:10:20
9000 -- (-799.446) [-812.419] (-827.534) (-836.735) * [-810.948] (-834.941) (-809.685) (-817.101) -- 0:11:00
10000 -- (-821.847) (-815.780) [-813.106] (-832.749) * [-821.351] (-848.018) (-819.880) (-834.213) -- 0:11:33
Average standard deviation of split frequencies: 0.076690
11000 -- (-803.444) (-815.725) [-814.676] (-851.451) * [-823.942] (-831.772) (-811.664) (-828.564) -- 0:10:29
12000 -- [-817.094] (-818.119) (-809.802) (-841.356) * (-831.983) (-809.921) [-801.774] (-839.290) -- 0:10:58
13000 -- (-831.967) [-813.334] (-814.433) (-844.845) * (-824.348) (-823.485) [-811.966] (-818.790) -- 0:11:23
14000 -- (-833.609) [-801.273] (-829.718) (-845.836) * (-814.505) (-817.096) [-816.087] (-811.116) -- 0:11:44
15000 -- [-826.078] (-809.924) (-828.716) (-848.407) * (-815.703) (-842.632) (-821.057) [-808.979] -- 0:10:56
Average standard deviation of split frequencies: 0.052074
16000 -- (-816.700) [-818.568] (-806.602) (-836.289) * (-812.813) (-825.719) (-808.449) [-804.832] -- 0:11:16
17000 -- (-817.065) [-814.813] (-829.759) (-830.797) * [-805.187] (-821.678) (-820.667) (-813.131) -- 0:11:33
18000 -- (-818.705) (-827.163) [-818.672] (-837.548) * (-819.125) [-820.846] (-830.478) (-813.629) -- 0:10:54
19000 -- (-830.996) (-824.332) [-816.065] (-828.208) * (-821.917) (-820.146) [-811.054] (-847.652) -- 0:11:11
20000 -- (-810.739) (-818.626) [-813.939] (-816.900) * (-818.949) (-804.526) (-841.220) [-820.541] -- 0:11:26
Average standard deviation of split frequencies: 0.044949
21000 -- [-808.483] (-813.943) (-807.160) (-830.522) * (-830.415) (-815.147) (-833.223) [-817.428] -- 0:10:52
22000 -- (-817.482) (-812.774) (-829.664) [-808.763] * (-822.080) [-806.945] (-814.456) (-842.812) -- 0:11:06
23000 -- (-821.643) [-800.756] (-833.294) (-807.331) * (-826.318) [-813.077] (-839.882) (-827.984) -- 0:11:19
24000 -- (-804.936) [-818.705] (-822.105) (-836.674) * (-809.603) [-808.764] (-820.887) (-821.366) -- 0:10:50
25000 -- (-817.952) (-835.949) (-811.968) [-817.996] * (-818.801) [-805.755] (-817.430) (-834.155) -- 0:11:03
Average standard deviation of split frequencies: 0.047054
26000 -- (-818.268) [-805.983] (-811.580) (-823.632) * (-811.089) [-818.628] (-818.724) (-813.789) -- 0:11:14
27000 -- [-812.985] (-815.288) (-813.431) (-818.016) * (-806.949) (-817.089) (-830.493) [-809.482] -- 0:10:48
28000 -- (-828.074) [-803.897] (-845.619) (-810.766) * (-811.343) (-824.449) (-829.617) [-819.301] -- 0:10:59
29000 -- (-814.025) (-821.027) (-813.898) [-798.539] * (-822.642) [-828.084] (-822.845) (-813.500) -- 0:11:09
30000 -- (-835.562) (-827.103) (-821.993) [-812.918] * (-821.680) (-810.153) (-823.350) [-807.536] -- 0:10:46
Average standard deviation of split frequencies: 0.047653
31000 -- (-839.507) (-830.899) (-820.485) [-811.064] * (-829.324) [-800.581] (-821.513) (-833.165) -- 0:10:56
32000 -- (-824.587) (-828.520) [-830.127] (-817.782) * (-827.494) [-807.573] (-821.226) (-824.489) -- 0:11:05
33000 -- (-835.832) (-832.324) [-808.745] (-819.569) * (-827.416) (-816.307) (-819.629) [-813.389] -- 0:11:13
34000 -- (-816.748) (-811.224) [-809.178] (-808.455) * (-835.927) [-814.109] (-814.163) (-821.568) -- 0:10:53
35000 -- (-816.885) (-823.075) [-815.312] (-831.256) * (-832.071) (-814.875) (-818.858) [-816.201] -- 0:11:01
Average standard deviation of split frequencies: 0.043074
36000 -- (-812.076) (-828.580) [-811.560] (-823.315) * [-799.347] (-828.072) (-808.105) (-821.900) -- 0:11:09
37000 -- (-826.810) [-819.312] (-826.444) (-828.768) * [-814.275] (-825.122) (-813.750) (-817.275) -- 0:10:50
38000 -- (-826.287) [-811.008] (-822.162) (-819.442) * [-816.684] (-823.757) (-811.521) (-812.076) -- 0:10:58
39000 -- (-836.081) [-799.506] (-823.258) (-822.547) * (-839.003) (-821.151) [-818.360] (-813.072) -- 0:11:05
40000 -- (-828.335) [-802.648] (-820.996) (-823.740) * (-831.076) [-804.326] (-813.235) (-813.399) -- 0:10:48
Average standard deviation of split frequencies: 0.047030
41000 -- (-819.278) (-806.039) (-822.710) [-823.971] * (-831.045) [-807.846] (-806.194) (-814.920) -- 0:10:54
42000 -- (-842.097) [-815.308] (-813.625) (-832.148) * (-832.264) [-824.318] (-811.749) (-837.941) -- 0:11:01
43000 -- (-845.996) (-823.682) [-817.842] (-846.823) * (-827.432) [-809.719] (-818.806) (-817.082) -- 0:10:45
44000 -- (-826.037) [-814.671] (-817.624) (-826.103) * (-814.662) (-828.272) (-821.239) [-812.696] -- 0:10:51
45000 -- (-841.997) (-817.596) (-827.475) [-811.412] * (-822.384) (-829.480) (-826.114) [-806.773] -- 0:10:57
Average standard deviation of split frequencies: 0.038430
46000 -- (-843.344) [-810.617] (-811.631) (-816.524) * (-832.633) (-820.891) [-815.183] (-818.953) -- 0:10:42
47000 -- (-821.572) [-809.874] (-825.371) (-828.701) * [-821.110] (-828.901) (-815.228) (-827.793) -- 0:10:48
48000 -- (-824.548) [-810.324] (-820.824) (-816.971) * [-809.437] (-809.180) (-823.252) (-841.588) -- 0:10:54
49000 -- (-855.301) (-818.461) [-807.915] (-809.960) * (-813.213) [-801.146] (-828.308) (-837.757) -- 0:10:59
50000 -- (-829.236) [-819.294] (-834.897) (-808.786) * (-809.798) (-821.555) [-813.795] (-833.039) -- 0:10:46
Average standard deviation of split frequencies: 0.033856
51000 -- (-833.647) [-815.141] (-827.060) (-822.313) * (-801.821) (-841.475) [-803.889] (-821.619) -- 0:10:51
52000 -- (-814.736) (-837.262) (-819.318) [-812.626] * [-811.192] (-822.179) (-819.544) (-816.533) -- 0:10:56
53000 -- (-820.940) (-832.422) (-827.171) [-821.691] * (-807.961) (-836.244) [-816.705] (-825.664) -- 0:10:43
54000 -- [-815.125] (-836.681) (-835.387) (-819.628) * (-806.556) (-825.915) [-800.950] (-819.405) -- 0:10:48
55000 -- (-825.876) (-828.070) (-828.284) [-813.933] * [-807.137] (-808.583) (-821.564) (-827.300) -- 0:10:52
Average standard deviation of split frequencies: 0.032093
56000 -- (-818.108) (-817.082) (-830.798) [-811.679] * (-808.968) [-819.662] (-844.506) (-817.942) -- 0:10:40
57000 -- (-832.059) (-810.203) (-835.261) [-813.600] * (-820.196) [-804.295] (-848.060) (-813.765) -- 0:10:45
58000 -- (-818.489) (-809.908) [-810.404] (-833.978) * (-814.138) (-833.302) (-822.618) [-815.530] -- 0:10:49
59000 -- (-836.508) (-818.460) (-812.954) [-814.746] * (-829.361) (-830.515) (-816.389) [-810.348] -- 0:10:53
60000 -- (-822.131) (-814.575) (-815.194) [-806.740] * (-808.432) (-833.043) [-814.153] (-819.748) -- 0:10:42
Average standard deviation of split frequencies: 0.033907
61000 -- (-846.812) (-823.097) (-828.629) [-804.773] * (-820.569) (-838.783) (-827.464) [-800.378] -- 0:10:46
62000 -- (-847.566) (-808.461) (-827.054) [-810.954] * (-815.074) (-857.010) (-815.174) [-806.780] -- 0:10:50
63000 -- (-834.773) [-811.594] (-831.835) (-819.405) * (-827.185) (-830.542) [-818.984] (-827.266) -- 0:10:39
64000 -- (-810.540) (-815.396) (-843.420) [-825.044] * (-814.528) [-812.891] (-842.971) (-813.971) -- 0:10:43
65000 -- (-845.248) [-810.718] (-860.760) (-816.076) * (-817.307) [-808.333] (-837.048) (-816.530) -- 0:10:47
Average standard deviation of split frequencies: 0.028570
66000 -- (-818.761) (-819.840) [-808.351] (-825.504) * (-815.604) (-815.518) (-817.957) [-808.057] -- 0:10:36
67000 -- [-811.939] (-821.273) (-813.471) (-836.269) * (-834.343) [-802.311] (-819.115) (-844.196) -- 0:10:40
68000 -- (-814.770) (-814.769) [-817.597] (-822.600) * (-817.211) [-811.907] (-803.513) (-851.309) -- 0:10:44
69000 -- (-825.591) [-810.599] (-810.934) (-821.449) * (-854.724) (-807.704) [-804.519] (-847.999) -- 0:10:47
70000 -- (-800.919) (-828.053) (-837.942) [-817.109] * (-838.359) (-806.361) [-810.518] (-814.145) -- 0:10:37
Average standard deviation of split frequencies: 0.028645
71000 -- (-830.243) (-807.076) (-823.890) [-808.228] * (-832.145) [-820.411] (-815.589) (-830.968) -- 0:10:41
72000 -- (-814.518) (-816.041) (-828.589) [-805.465] * (-810.781) (-817.770) [-810.089] (-834.955) -- 0:10:44
73000 -- (-805.057) (-822.892) (-832.342) [-810.151] * [-806.772] (-850.963) (-826.588) (-817.715) -- 0:10:34
74000 -- (-801.888) (-822.034) (-832.142) [-807.508] * [-812.515] (-818.857) (-830.898) (-832.398) -- 0:10:38
75000 -- [-815.075] (-816.198) (-840.829) (-831.867) * [-812.869] (-833.953) (-831.451) (-836.278) -- 0:10:41
Average standard deviation of split frequencies: 0.030262
76000 -- (-829.158) (-811.813) (-828.595) [-808.264] * (-807.371) [-813.970] (-813.797) (-814.030) -- 0:10:32
77000 -- (-835.907) (-820.593) [-820.005] (-812.677) * (-816.774) (-825.452) [-814.631] (-821.628) -- 0:10:35
78000 -- (-829.753) (-831.218) (-817.700) [-814.129] * (-810.965) (-843.854) [-823.084] (-815.987) -- 0:10:38
79000 -- (-814.210) (-836.946) [-828.615] (-828.052) * (-811.948) (-824.679) [-819.789] (-844.176) -- 0:10:29
80000 -- (-805.629) (-835.515) (-834.830) [-803.959] * [-810.608] (-827.074) (-802.934) (-852.531) -- 0:10:32
Average standard deviation of split frequencies: 0.024836
81000 -- (-812.060) [-802.205] (-831.663) (-829.292) * (-798.564) (-823.451) (-835.582) [-820.128] -- 0:10:35
82000 -- (-819.997) [-806.105] (-814.951) (-819.510) * [-818.013] (-824.876) (-836.288) (-814.576) -- 0:10:38
83000 -- (-821.898) (-822.593) [-808.819] (-821.002) * (-802.345) (-847.888) [-814.645] (-822.338) -- 0:10:29
84000 -- (-834.517) (-818.078) [-807.836] (-824.089) * (-816.142) (-853.955) [-806.040] (-828.103) -- 0:10:32
85000 -- [-809.496] (-834.199) (-808.381) (-823.101) * (-827.846) (-829.169) [-800.712] (-829.459) -- 0:10:35
Average standard deviation of split frequencies: 0.025352
86000 -- (-815.999) (-812.858) [-812.648] (-819.347) * (-836.549) [-807.898] (-828.031) (-825.962) -- 0:10:27
87000 -- (-825.716) (-814.742) [-811.738] (-817.898) * (-812.719) (-810.309) [-810.749] (-835.101) -- 0:10:29
88000 -- (-845.527) (-804.778) (-806.077) [-803.145] * (-830.766) [-807.169] (-827.108) (-829.830) -- 0:10:32
89000 -- (-828.775) [-807.489] (-804.681) (-817.717) * (-818.993) (-812.370) [-805.875] (-834.910) -- 0:10:24
90000 -- [-815.366] (-818.389) (-819.321) (-818.671) * [-828.762] (-819.470) (-804.706) (-820.210) -- 0:10:26
Average standard deviation of split frequencies: 0.024047
91000 -- (-816.320) [-798.464] (-800.020) (-836.570) * (-818.060) (-822.854) [-817.289] (-810.908) -- 0:10:29
92000 -- (-830.382) [-808.154] (-798.443) (-820.980) * (-820.957) [-819.440] (-815.081) (-820.813) -- 0:10:31
93000 -- (-838.855) [-811.307] (-803.011) (-839.084) * [-804.867] (-830.382) (-835.701) (-827.020) -- 0:10:24
94000 -- (-841.800) (-800.392) [-812.154] (-841.861) * (-799.331) (-829.038) (-831.640) [-818.611] -- 0:10:26
95000 -- (-823.445) [-810.485] (-836.937) (-817.777) * [-810.748] (-822.249) (-838.592) (-820.455) -- 0:10:28
Average standard deviation of split frequencies: 0.022557
96000 -- (-830.781) [-812.047] (-837.099) (-824.377) * [-804.336] (-813.607) (-834.529) (-855.363) -- 0:10:21
97000 -- [-807.125] (-818.583) (-832.260) (-833.599) * (-817.901) [-815.461] (-845.222) (-845.657) -- 0:10:23
98000 -- [-810.283] (-825.629) (-817.588) (-836.039) * [-814.439] (-820.114) (-839.331) (-816.442) -- 0:10:25
99000 -- [-805.532] (-818.680) (-819.102) (-837.508) * (-828.477) (-809.262) [-808.960] (-822.925) -- 0:10:18
100000 -- (-808.864) (-821.633) [-820.476] (-843.331) * (-824.992) [-813.399] (-805.519) (-803.706) -- 0:10:21
Average standard deviation of split frequencies: 0.023999
101000 -- (-847.769) [-817.152] (-817.920) (-817.715) * (-829.420) [-810.798] (-818.414) (-837.451) -- 0:10:23
102000 -- (-825.768) (-843.361) [-810.949] (-820.819) * (-828.645) [-812.673] (-818.867) (-835.016) -- 0:10:25
103000 -- [-819.355] (-834.988) (-818.478) (-814.892) * (-819.516) (-809.300) [-812.413] (-831.427) -- 0:10:18
104000 -- (-811.524) (-843.117) [-826.437] (-819.746) * (-822.222) [-808.048] (-825.287) (-812.908) -- 0:10:20
105000 -- (-821.455) (-831.695) (-817.144) [-808.160] * (-828.614) (-839.568) [-827.762] (-815.033) -- 0:10:22
Average standard deviation of split frequencies: 0.024321
106000 -- (-833.462) (-814.751) (-798.518) [-813.297] * [-824.748] (-824.053) (-827.880) (-845.146) -- 0:10:15
107000 -- (-809.926) (-818.084) (-821.809) [-803.883] * (-827.400) [-826.843] (-818.521) (-847.222) -- 0:10:17
108000 -- (-835.420) (-820.975) (-802.296) [-808.978] * (-835.378) (-821.576) (-833.602) [-813.211] -- 0:10:19
109000 -- (-834.395) (-817.497) (-810.764) [-819.553] * (-825.226) [-812.726] (-826.845) (-805.887) -- 0:10:13
110000 -- (-849.765) (-816.272) (-843.584) [-811.467] * (-831.378) [-813.717] (-819.376) (-832.924) -- 0:10:14
Average standard deviation of split frequencies: 0.023295
111000 -- (-836.886) [-816.143] (-807.291) (-817.075) * (-830.696) (-808.815) (-829.359) [-813.281] -- 0:10:16
112000 -- (-848.141) (-825.948) (-806.083) [-816.618] * (-831.646) [-804.209] (-819.145) (-825.427) -- 0:10:10
113000 -- (-838.056) (-841.874) [-804.107] (-824.619) * (-824.020) (-821.196) (-824.573) [-808.013] -- 0:10:12
114000 -- (-831.673) (-822.409) (-812.495) [-806.535] * (-856.041) (-824.735) (-816.397) [-810.966] -- 0:10:13
115000 -- (-814.698) (-817.709) (-838.624) [-793.107] * (-843.078) [-817.776] (-819.634) (-807.339) -- 0:10:15
Average standard deviation of split frequencies: 0.024637
116000 -- (-819.192) (-821.633) [-815.756] (-823.981) * (-832.737) (-807.380) (-820.322) [-797.730] -- 0:10:09
117000 -- (-811.614) (-815.244) [-815.864] (-812.175) * (-805.334) (-823.485) (-828.580) [-811.242] -- 0:10:11
118000 -- [-810.176] (-815.385) (-819.861) (-816.270) * (-814.777) (-817.141) (-827.878) [-814.072] -- 0:10:12
119000 -- (-814.752) (-815.633) (-815.000) [-817.518] * [-811.635] (-810.307) (-835.805) (-842.183) -- 0:10:07
120000 -- (-822.763) (-833.083) (-818.185) [-810.376] * [-810.132] (-823.703) (-826.652) (-838.306) -- 0:10:08
Average standard deviation of split frequencies: 0.023806
121000 -- (-832.162) (-834.632) (-816.244) [-806.795] * [-810.316] (-825.743) (-823.816) (-833.133) -- 0:10:10
122000 -- (-823.848) (-826.576) [-817.249] (-819.643) * (-832.844) (-840.962) (-824.875) [-801.674] -- 0:10:04
123000 -- (-838.512) (-827.685) (-810.576) [-803.257] * (-820.831) [-817.404] (-811.842) (-816.128) -- 0:10:06
124000 -- (-824.883) (-835.340) (-812.548) [-800.900] * (-829.737) (-814.898) [-808.259] (-834.151) -- 0:10:07
125000 -- (-824.297) (-819.326) (-806.603) [-810.815] * (-831.663) (-809.905) [-814.941] (-833.996) -- 0:10:02
Average standard deviation of split frequencies: 0.025838
126000 -- (-828.769) (-817.458) (-821.939) [-820.429] * (-833.735) [-804.384] (-816.714) (-824.017) -- 0:10:03
127000 -- (-832.234) (-853.920) (-819.575) [-817.475] * (-813.079) [-816.371] (-817.474) (-829.466) -- 0:10:04
128000 -- (-816.706) (-849.007) [-805.739] (-811.976) * (-807.528) [-805.345] (-815.484) (-821.759) -- 0:10:06
129000 -- (-808.952) (-825.474) [-810.041] (-816.993) * [-811.668] (-802.954) (-815.692) (-834.500) -- 0:10:00
130000 -- (-831.767) (-825.835) (-826.463) [-806.898] * (-807.247) (-823.839) [-806.107] (-841.441) -- 0:10:02
Average standard deviation of split frequencies: 0.025705
131000 -- (-825.362) [-814.815] (-825.267) (-814.770) * (-823.889) [-811.538] (-807.868) (-818.058) -- 0:10:03
132000 -- (-819.284) (-825.135) [-817.894] (-820.177) * (-832.374) (-819.924) [-812.158] (-817.678) -- 0:09:58
133000 -- (-807.253) [-812.399] (-819.800) (-817.974) * (-827.879) (-838.480) (-814.928) [-811.533] -- 0:09:59
134000 -- [-804.121] (-839.078) (-819.067) (-815.663) * (-841.934) (-820.055) (-817.892) [-809.747] -- 0:10:01
135000 -- (-814.194) (-823.334) (-826.769) [-811.355] * (-826.870) (-819.236) (-813.856) [-809.231] -- 0:09:55
Average standard deviation of split frequencies: 0.025455
136000 -- (-818.573) (-854.747) [-809.178] (-819.314) * (-833.684) (-832.870) (-830.203) [-809.828] -- 0:09:57
137000 -- (-826.690) (-838.149) (-824.126) [-813.633] * (-821.092) (-819.519) [-820.281] (-817.886) -- 0:09:58
138000 -- (-821.862) (-819.394) (-811.600) [-807.553] * (-832.948) [-802.383] (-827.741) (-811.476) -- 0:09:53
139000 -- [-802.604] (-838.982) (-811.239) (-831.009) * (-822.955) [-820.742] (-817.352) (-828.577) -- 0:09:54
140000 -- [-813.331] (-848.492) (-813.056) (-832.944) * (-820.625) [-815.355] (-825.063) (-831.231) -- 0:09:55
Average standard deviation of split frequencies: 0.024506
141000 -- [-802.891] (-835.697) (-824.492) (-827.230) * (-816.975) [-824.730] (-822.969) (-824.254) -- 0:09:50
142000 -- (-823.312) (-824.093) [-812.150] (-813.163) * [-821.529] (-826.496) (-819.085) (-828.945) -- 0:09:52
143000 -- (-815.883) [-810.944] (-822.217) (-826.905) * (-811.606) (-815.368) (-830.233) [-811.382] -- 0:09:53
144000 -- (-826.885) [-807.254] (-832.960) (-830.251) * [-807.973] (-834.712) (-846.759) (-828.271) -- 0:09:48
145000 -- (-828.254) [-804.158] (-834.207) (-837.351) * [-822.545] (-819.095) (-820.364) (-823.961) -- 0:09:49
Average standard deviation of split frequencies: 0.022904
146000 -- (-827.364) (-811.778) [-815.082] (-839.131) * (-819.839) [-818.484] (-814.346) (-823.114) -- 0:09:50
147000 -- (-841.169) (-821.879) (-811.358) [-817.327] * (-830.805) [-815.335] (-814.642) (-808.681) -- 0:09:51
148000 -- (-830.909) (-817.289) [-814.315] (-823.369) * (-825.584) (-817.134) (-841.330) [-809.262] -- 0:09:47
149000 -- (-830.701) [-819.262] (-835.605) (-813.737) * [-803.463] (-837.509) (-832.323) (-814.657) -- 0:09:48
150000 -- (-831.355) (-814.797) [-812.012] (-822.789) * [-804.496] (-813.917) (-853.091) (-824.113) -- 0:09:49
Average standard deviation of split frequencies: 0.024835
151000 -- (-822.765) (-807.391) (-821.405) [-814.768] * (-809.226) (-816.441) (-824.076) [-802.337] -- 0:09:44
152000 -- (-836.349) (-816.503) [-793.705] (-812.534) * (-814.323) (-816.496) [-814.929] (-810.359) -- 0:09:45
153000 -- (-830.595) (-835.024) (-801.311) [-809.027] * (-834.603) (-829.638) (-811.728) [-809.806] -- 0:09:46
154000 -- (-831.610) [-819.547] (-826.214) (-826.287) * [-812.215] (-819.826) (-814.223) (-815.357) -- 0:09:42
155000 -- (-819.591) [-803.913] (-822.126) (-817.323) * [-816.167] (-830.013) (-809.999) (-825.476) -- 0:09:43
Average standard deviation of split frequencies: 0.023702
156000 -- [-803.725] (-821.167) (-835.572) (-812.546) * (-818.352) (-829.038) [-807.090] (-830.465) -- 0:09:44
157000 -- (-827.814) (-804.684) (-813.529) [-810.906] * (-815.367) (-813.790) [-807.754] (-820.422) -- 0:09:39
158000 -- (-823.434) (-824.013) [-801.054] (-826.314) * (-829.883) (-824.630) [-812.598] (-817.439) -- 0:09:40
159000 -- [-799.689] (-829.152) (-805.059) (-825.539) * (-815.079) [-808.979] (-814.975) (-847.374) -- 0:09:41
160000 -- (-813.906) (-825.890) [-807.116] (-828.634) * (-826.782) [-812.832] (-835.735) (-807.439) -- 0:09:42
Average standard deviation of split frequencies: 0.023381
161000 -- (-824.199) (-834.313) [-806.681] (-828.929) * (-813.498) [-821.564] (-822.853) (-844.824) -- 0:09:38
162000 -- [-813.144] (-820.515) (-819.439) (-823.820) * (-813.621) (-820.079) [-808.276] (-820.531) -- 0:09:39
163000 -- [-808.212] (-826.830) (-823.296) (-826.015) * (-819.055) (-824.083) [-818.395] (-814.515) -- 0:09:40
164000 -- (-806.393) (-814.993) [-792.308] (-848.237) * (-814.068) [-811.496] (-823.491) (-835.106) -- 0:09:36
165000 -- [-808.037] (-819.158) (-835.493) (-811.047) * (-821.443) [-807.391] (-830.612) (-810.530) -- 0:09:36
Average standard deviation of split frequencies: 0.022541
166000 -- (-826.324) (-830.107) (-829.748) [-816.773] * (-823.080) (-821.949) [-806.888] (-828.120) -- 0:09:37
167000 -- (-813.703) (-832.158) [-808.528] (-826.510) * (-817.924) [-810.451] (-838.359) (-818.648) -- 0:09:33
168000 -- (-803.639) [-831.006] (-810.898) (-833.624) * [-821.246] (-821.622) (-819.757) (-814.665) -- 0:09:34
169000 -- (-817.954) (-816.528) [-810.063] (-833.846) * (-805.673) [-814.725] (-828.967) (-821.222) -- 0:09:35
170000 -- (-815.209) (-823.538) [-812.485] (-820.692) * (-820.472) [-813.397] (-828.823) (-806.786) -- 0:09:36
Average standard deviation of split frequencies: 0.024600
171000 -- (-818.365) (-805.883) [-804.639] (-826.169) * [-809.003] (-807.599) (-819.211) (-813.223) -- 0:09:32
172000 -- (-823.195) [-806.289] (-830.825) (-847.152) * [-799.935] (-855.558) (-806.402) (-817.283) -- 0:09:32
173000 -- (-827.634) (-812.360) [-814.544] (-849.059) * (-824.323) (-840.526) [-809.921] (-854.392) -- 0:09:33
174000 -- (-826.484) (-814.549) [-822.106] (-833.278) * (-820.818) (-830.534) [-811.330] (-841.195) -- 0:09:29
175000 -- (-825.243) [-826.363] (-823.260) (-834.529) * [-818.890] (-825.944) (-809.666) (-823.034) -- 0:09:30
Average standard deviation of split frequencies: 0.023269
176000 -- (-824.093) [-807.956] (-811.624) (-819.312) * [-818.606] (-815.556) (-833.936) (-821.382) -- 0:09:31
177000 -- (-809.003) (-819.240) [-808.145] (-842.726) * (-815.652) [-820.076] (-823.322) (-851.584) -- 0:09:27
178000 -- [-803.489] (-831.043) (-815.987) (-816.077) * (-816.837) [-810.960] (-839.175) (-811.808) -- 0:09:28
179000 -- [-804.328] (-817.297) (-818.477) (-839.984) * [-818.781] (-818.292) (-829.786) (-820.313) -- 0:09:28
180000 -- [-813.219] (-821.941) (-826.527) (-831.313) * (-819.480) [-811.044] (-831.555) (-829.019) -- 0:09:29
Average standard deviation of split frequencies: 0.021934
181000 -- (-815.551) [-821.014] (-836.851) (-813.663) * (-824.359) [-811.090] (-833.929) (-815.958) -- 0:09:25
182000 -- [-803.239] (-815.835) (-812.935) (-831.529) * [-816.665] (-809.018) (-825.056) (-818.474) -- 0:09:26
183000 -- [-804.655] (-822.732) (-815.474) (-821.546) * (-821.612) (-809.416) [-819.216] (-813.771) -- 0:09:26
184000 -- (-809.244) [-808.021] (-814.764) (-829.588) * (-827.576) [-821.524] (-834.581) (-824.751) -- 0:09:23
185000 -- (-816.826) [-820.509] (-809.210) (-819.058) * (-807.829) [-815.408] (-825.748) (-842.197) -- 0:09:23
Average standard deviation of split frequencies: 0.023523
186000 -- (-820.276) (-829.901) [-808.214] (-827.686) * [-810.863] (-822.934) (-833.430) (-847.935) -- 0:09:24
187000 -- (-841.631) [-804.114] (-814.038) (-828.804) * (-840.970) (-826.415) [-809.769] (-826.784) -- 0:09:20
188000 -- (-848.400) (-807.843) [-829.514] (-833.706) * (-819.116) (-814.629) [-803.789] (-836.398) -- 0:09:21
189000 -- (-841.637) (-810.325) (-830.169) [-808.972] * (-833.272) (-809.811) [-810.096] (-827.120) -- 0:09:22
190000 -- (-822.664) (-819.355) (-829.730) [-803.539] * (-838.642) (-813.607) [-817.483] (-826.291) -- 0:09:22
Average standard deviation of split frequencies: 0.022406
191000 -- [-814.334] (-825.325) (-825.664) (-828.325) * (-831.602) (-811.275) (-832.950) [-815.207] -- 0:09:19
192000 -- (-815.067) (-815.366) (-823.697) [-817.116] * (-833.625) (-839.280) (-828.176) [-801.596] -- 0:09:19
193000 -- (-810.753) (-821.684) (-832.838) [-804.551] * (-842.171) (-824.257) [-810.358] (-806.028) -- 0:09:20
194000 -- (-819.155) [-813.544] (-819.737) (-821.205) * (-813.130) (-823.358) [-821.717] (-817.932) -- 0:09:16
195000 -- [-804.472] (-815.967) (-821.687) (-817.665) * (-812.778) (-824.883) [-815.964] (-819.907) -- 0:09:17
Average standard deviation of split frequencies: 0.020895
196000 -- (-815.077) [-809.823] (-825.996) (-829.547) * (-820.717) (-806.089) [-811.304] (-821.666) -- 0:09:17
197000 -- [-810.029] (-815.380) (-805.319) (-832.065) * (-822.356) [-811.975] (-826.214) (-837.063) -- 0:09:14
198000 -- (-816.207) [-811.142] (-815.171) (-849.452) * (-818.523) [-799.109] (-839.186) (-819.104) -- 0:09:14
199000 -- [-810.869] (-808.236) (-813.574) (-840.874) * (-835.562) (-812.364) [-811.068] (-833.147) -- 0:09:15
200000 -- [-811.162] (-805.505) (-851.493) (-833.214) * (-823.183) (-827.662) (-817.669) [-824.281] -- 0:09:16
Average standard deviation of split frequencies: 0.020849
201000 -- (-823.192) [-813.368] (-829.040) (-840.207) * (-825.016) (-822.795) (-832.599) [-814.766] -- 0:09:12
202000 -- (-823.030) (-818.570) [-815.160] (-822.456) * [-814.990] (-821.013) (-831.020) (-811.748) -- 0:09:13
203000 -- (-819.655) (-813.894) [-817.457] (-830.593) * [-806.680] (-814.629) (-840.376) (-833.097) -- 0:09:13
204000 -- [-821.879] (-839.006) (-814.326) (-825.262) * (-806.908) [-835.663] (-832.440) (-838.752) -- 0:09:10
205000 -- (-821.335) (-826.714) [-826.957] (-838.366) * [-804.463] (-811.942) (-837.845) (-828.502) -- 0:09:10
Average standard deviation of split frequencies: 0.021167
206000 -- (-810.756) (-821.229) (-846.168) [-809.907] * (-803.330) [-817.462] (-839.864) (-847.212) -- 0:09:11
207000 -- (-804.873) (-822.685) [-820.215] (-822.085) * [-808.249] (-825.933) (-824.942) (-838.377) -- 0:09:07
208000 -- [-800.504] (-846.350) (-801.049) (-802.694) * [-803.835] (-810.925) (-827.444) (-816.849) -- 0:09:08
209000 -- (-808.103) (-810.882) (-820.820) [-820.094] * (-813.037) (-803.169) [-814.544] (-813.944) -- 0:09:08
210000 -- (-812.175) (-846.915) (-849.860) [-823.475] * [-806.083] (-822.402) (-830.480) (-828.972) -- 0:09:09
Average standard deviation of split frequencies: 0.019510
211000 -- (-820.330) (-833.099) (-837.813) [-817.247] * (-844.760) [-803.261] (-811.237) (-832.337) -- 0:09:05
212000 -- [-818.079] (-822.964) (-819.401) (-827.309) * (-813.586) (-818.906) [-804.563] (-833.533) -- 0:09:06
213000 -- (-821.449) [-803.415] (-812.613) (-825.629) * (-832.140) (-805.487) [-802.878] (-838.900) -- 0:09:06
214000 -- [-823.027] (-808.949) (-819.278) (-806.217) * (-817.998) [-802.363] (-819.440) (-833.864) -- 0:09:03
215000 -- (-830.328) [-833.110] (-820.715) (-816.574) * (-815.543) [-802.882] (-820.722) (-835.560) -- 0:09:04
Average standard deviation of split frequencies: 0.018141
216000 -- (-826.154) (-831.582) (-842.489) [-811.802] * [-810.360] (-815.548) (-822.188) (-824.972) -- 0:09:04
217000 -- [-805.832] (-815.574) (-819.369) (-812.446) * (-836.414) (-824.363) (-828.536) [-816.698] -- 0:09:01
218000 -- (-820.088) (-827.309) (-826.478) [-811.791] * (-830.631) (-813.077) [-821.602] (-816.178) -- 0:09:01
219000 -- [-814.565] (-834.846) (-807.828) (-852.539) * (-841.107) [-814.132] (-829.204) (-813.409) -- 0:09:02
220000 -- (-829.538) (-808.261) (-805.625) [-807.747] * (-847.428) (-833.843) (-853.953) [-804.097] -- 0:08:58
Average standard deviation of split frequencies: 0.017691
221000 -- (-811.268) (-818.515) [-804.947] (-824.365) * (-821.098) (-822.257) (-816.096) [-822.241] -- 0:08:59
222000 -- (-834.325) (-816.010) [-812.234] (-840.319) * (-819.669) (-823.856) (-817.904) [-816.281] -- 0:08:59
223000 -- (-803.835) [-807.865] (-833.186) (-846.521) * (-826.753) (-817.365) [-815.210] (-810.013) -- 0:08:56
224000 -- [-807.957] (-818.417) (-838.383) (-818.378) * (-813.364) (-812.359) (-820.562) [-813.879] -- 0:08:56
225000 -- (-812.993) (-831.373) (-818.585) [-815.516] * [-813.145] (-827.027) (-810.064) (-811.818) -- 0:08:57
Average standard deviation of split frequencies: 0.016426
226000 -- [-802.752] (-841.279) (-814.205) (-821.706) * [-816.722] (-825.161) (-845.934) (-813.366) -- 0:08:57
227000 -- [-805.384] (-825.301) (-820.826) (-825.279) * [-825.017] (-841.873) (-822.618) (-810.655) -- 0:08:54
228000 -- [-820.616] (-821.951) (-825.122) (-816.928) * (-823.225) (-834.637) (-853.196) [-805.457] -- 0:08:54
229000 -- [-823.778] (-830.759) (-843.654) (-815.566) * (-825.749) (-837.403) [-826.846] (-813.164) -- 0:08:55
230000 -- (-818.563) (-828.930) [-809.950] (-817.932) * (-816.877) (-859.157) (-831.849) [-802.471] -- 0:08:52
Average standard deviation of split frequencies: 0.015455
231000 -- (-825.317) [-817.856] (-819.873) (-836.415) * (-823.921) (-828.190) (-832.067) [-804.198] -- 0:08:52
232000 -- (-819.890) [-804.601] (-822.364) (-820.391) * (-832.778) (-839.070) (-824.981) [-804.522] -- 0:08:52
233000 -- (-821.232) [-811.998] (-819.672) (-824.112) * [-801.523] (-826.257) (-831.707) (-807.918) -- 0:08:49
234000 -- (-836.515) (-810.055) [-808.224] (-826.442) * [-823.015] (-821.771) (-835.629) (-802.136) -- 0:08:50
235000 -- (-825.197) (-817.638) [-807.422] (-825.370) * (-810.007) (-820.785) [-820.869] (-809.007) -- 0:08:50
Average standard deviation of split frequencies: 0.016666
236000 -- [-822.954] (-844.326) (-809.673) (-819.841) * (-823.312) [-829.411] (-822.316) (-813.233) -- 0:08:47
237000 -- (-814.791) (-830.041) [-822.157] (-834.298) * (-827.424) (-824.491) (-830.732) [-806.337] -- 0:08:47
238000 -- [-805.496] (-831.358) (-832.377) (-815.408) * (-829.298) [-810.577] (-847.749) (-806.095) -- 0:08:48
239000 -- [-816.826] (-841.242) (-830.013) (-810.178) * (-814.918) (-820.144) (-843.401) [-802.484] -- 0:08:45
240000 -- (-825.912) (-839.313) (-821.440) [-812.402] * [-807.865] (-821.343) (-852.055) (-811.448) -- 0:08:45
Average standard deviation of split frequencies: 0.015670
241000 -- (-829.677) (-816.372) [-806.429] (-818.104) * (-803.030) (-825.349) (-843.663) [-800.893] -- 0:08:45
242000 -- (-822.160) [-817.249] (-810.506) (-820.389) * (-811.590) (-820.352) (-830.152) [-804.118] -- 0:08:43
243000 -- [-802.998] (-826.721) (-820.268) (-819.278) * [-814.144] (-832.728) (-824.234) (-809.375) -- 0:08:43
244000 -- (-825.243) (-795.855) [-799.854] (-824.241) * (-807.830) [-828.661] (-820.769) (-808.805) -- 0:08:43
245000 -- [-819.541] (-818.686) (-816.153) (-830.998) * (-816.828) (-828.907) (-807.818) [-814.623] -- 0:08:43
Average standard deviation of split frequencies: 0.015270
246000 -- (-818.445) (-808.390) [-811.537] (-820.658) * [-817.073] (-825.507) (-834.118) (-833.674) -- 0:08:41
247000 -- (-807.640) [-832.670] (-822.065) (-850.774) * (-814.822) [-815.479] (-836.260) (-828.753) -- 0:08:41
248000 -- (-811.214) (-828.830) (-819.854) [-821.425] * (-819.850) [-806.528] (-852.191) (-815.294) -- 0:08:41
249000 -- (-814.090) (-819.695) [-815.696] (-844.120) * (-831.551) [-806.459] (-824.167) (-818.566) -- 0:08:38
250000 -- [-814.321] (-827.591) (-815.561) (-836.416) * (-825.454) (-812.693) [-822.474] (-809.038) -- 0:08:39
Average standard deviation of split frequencies: 0.014516
251000 -- (-805.311) (-823.595) [-811.667] (-825.775) * [-817.285] (-844.025) (-829.481) (-808.953) -- 0:08:39
252000 -- (-798.706) (-822.166) [-811.742] (-834.911) * (-820.783) (-819.073) (-823.901) [-809.555] -- 0:08:36
253000 -- (-816.488) [-804.880] (-841.541) (-811.581) * (-832.990) (-812.535) (-835.408) [-806.763] -- 0:08:36
254000 -- (-811.738) (-809.577) (-840.225) [-792.786] * (-822.410) (-821.481) (-832.148) [-792.785] -- 0:08:36
255000 -- (-815.486) (-825.546) (-825.550) [-802.197] * (-822.972) (-821.891) (-852.487) [-805.419] -- 0:08:34
Average standard deviation of split frequencies: 0.015595
256000 -- (-818.408) (-834.622) (-827.631) [-795.309] * [-815.173] (-822.160) (-829.385) (-836.940) -- 0:08:34
257000 -- (-820.284) (-803.406) (-839.726) [-818.788] * [-810.391] (-840.156) (-839.607) (-808.687) -- 0:08:34
258000 -- (-834.043) [-812.852] (-825.588) (-810.972) * (-818.885) (-822.852) (-808.826) [-815.030] -- 0:08:31
259000 -- (-839.974) [-816.970] (-814.871) (-824.376) * (-831.130) (-828.063) [-817.970] (-816.249) -- 0:08:32
260000 -- (-834.509) (-822.619) (-805.604) [-810.219] * (-832.249) (-833.195) (-814.624) [-803.632] -- 0:08:32
Average standard deviation of split frequencies: 0.017237
261000 -- (-831.868) (-815.602) (-825.585) [-809.153] * (-835.727) (-826.126) (-815.492) [-810.698] -- 0:08:29
262000 -- (-820.942) [-809.262] (-827.247) (-829.520) * (-818.479) (-817.395) [-833.663] (-823.857) -- 0:08:29
263000 -- (-820.596) [-818.918] (-836.363) (-820.291) * [-821.767] (-818.638) (-842.480) (-820.892) -- 0:08:30
264000 -- (-813.915) [-808.759] (-829.018) (-822.856) * (-822.771) [-810.802] (-815.375) (-828.925) -- 0:08:30
265000 -- [-815.379] (-813.577) (-848.459) (-827.515) * (-824.124) (-825.302) [-815.537] (-812.009) -- 0:08:27
Average standard deviation of split frequencies: 0.017888
266000 -- (-825.037) [-812.160] (-833.940) (-814.900) * (-813.246) (-827.182) (-822.436) [-802.083] -- 0:08:27
267000 -- (-814.569) [-811.045] (-826.929) (-817.986) * (-835.340) [-812.379] (-837.472) (-806.875) -- 0:08:27
268000 -- (-826.256) [-805.883] (-812.033) (-817.710) * (-812.922) (-824.559) (-810.719) [-808.610] -- 0:08:25
269000 -- [-827.082] (-817.782) (-831.381) (-840.458) * (-816.784) [-819.157] (-824.510) (-826.462) -- 0:08:25
270000 -- (-816.551) (-832.871) [-798.853] (-830.390) * (-824.389) (-822.689) (-831.663) [-832.841] -- 0:08:25
Average standard deviation of split frequencies: 0.018777
271000 -- (-826.732) (-843.843) [-804.150] (-837.411) * (-829.093) (-819.618) (-834.686) [-812.547] -- 0:08:23
272000 -- (-819.685) [-802.299] (-820.577) (-819.559) * (-818.320) [-810.966] (-824.787) (-821.783) -- 0:08:23
273000 -- (-795.087) (-812.135) [-799.194] (-818.558) * [-814.745] (-817.231) (-820.372) (-821.113) -- 0:08:23
274000 -- (-813.701) (-807.486) [-806.319] (-820.226) * [-809.933] (-827.953) (-823.566) (-833.922) -- 0:08:23
275000 -- [-798.968] (-819.722) (-807.317) (-841.563) * [-814.640] (-838.992) (-823.358) (-835.188) -- 0:08:20
Average standard deviation of split frequencies: 0.019161
276000 -- (-802.815) (-836.729) [-812.735] (-809.602) * [-814.825] (-841.252) (-813.395) (-836.662) -- 0:08:21
277000 -- (-847.357) (-827.247) [-813.065] (-814.076) * (-812.167) (-847.742) [-809.882] (-837.216) -- 0:08:21
278000 -- (-865.113) (-819.484) (-807.056) [-798.872] * (-825.880) (-828.619) [-809.801] (-841.242) -- 0:08:18
279000 -- (-837.085) [-805.721] (-828.236) (-806.492) * [-798.754] (-824.060) (-835.057) (-831.217) -- 0:08:18
280000 -- (-848.443) [-819.980] (-829.791) (-813.732) * (-818.024) (-823.228) (-825.729) [-829.450] -- 0:08:18
Average standard deviation of split frequencies: 0.018633
281000 -- (-836.169) [-822.714] (-819.504) (-825.551) * [-802.924] (-833.526) (-829.877) (-826.214) -- 0:08:16
282000 -- (-829.000) [-820.390] (-830.666) (-829.859) * (-816.397) (-839.727) [-819.633] (-826.033) -- 0:08:16
283000 -- (-836.785) (-802.380) (-818.708) [-806.458] * (-806.718) [-815.516] (-815.148) (-832.260) -- 0:08:16
284000 -- (-823.967) (-817.431) [-822.171] (-808.388) * [-805.745] (-833.678) (-816.184) (-819.521) -- 0:08:16
285000 -- (-832.562) (-816.083) [-806.472] (-813.023) * (-831.635) (-847.723) [-813.924] (-835.526) -- 0:08:14
Average standard deviation of split frequencies: 0.018131
286000 -- (-832.771) (-847.140) (-811.071) [-803.717] * [-816.232] (-839.599) (-839.804) (-826.270) -- 0:08:14
287000 -- (-823.340) (-834.837) [-813.777] (-817.717) * [-812.671] (-832.514) (-852.478) (-828.551) -- 0:08:14
288000 -- (-808.241) [-815.551] (-814.834) (-816.470) * [-804.019] (-820.486) (-843.257) (-839.993) -- 0:08:11
289000 -- (-812.368) (-832.618) [-822.813] (-848.481) * (-809.261) (-831.039) (-825.792) [-812.667] -- 0:08:12
290000 -- (-822.773) [-814.407] (-825.770) (-836.985) * [-810.799] (-832.944) (-823.722) (-816.389) -- 0:08:12
Average standard deviation of split frequencies: 0.017485
291000 -- (-818.641) [-809.591] (-842.245) (-815.683) * [-817.594] (-829.229) (-841.302) (-816.965) -- 0:08:09
292000 -- (-827.149) [-806.433] (-820.038) (-835.709) * (-820.379) [-814.301] (-833.373) (-837.035) -- 0:08:09
293000 -- [-812.535] (-821.114) (-828.485) (-823.877) * (-818.452) (-820.645) (-834.018) [-821.067] -- 0:08:09
294000 -- (-833.740) (-811.569) (-825.541) [-821.328] * (-810.747) [-816.577] (-830.670) (-823.837) -- 0:08:09
295000 -- (-816.405) [-806.643] (-837.887) (-814.354) * (-820.112) (-824.038) (-825.085) [-817.229] -- 0:08:07
Average standard deviation of split frequencies: 0.017867
296000 -- (-821.913) [-800.952] (-827.552) (-834.029) * [-819.125] (-837.878) (-810.646) (-813.333) -- 0:08:07
297000 -- (-829.247) (-833.243) [-809.487] (-819.401) * (-825.037) (-828.895) (-829.180) [-811.182] -- 0:08:07
298000 -- (-821.720) (-837.252) (-838.553) [-809.268] * (-829.910) [-807.422] (-805.206) (-807.230) -- 0:08:05
299000 -- (-831.163) (-838.835) (-839.235) [-806.296] * [-810.978] (-808.491) (-814.959) (-835.026) -- 0:08:05
300000 -- (-819.633) (-824.609) (-839.306) [-813.069] * (-840.839) [-797.743] (-820.724) (-839.891) -- 0:08:05
Average standard deviation of split frequencies: 0.017981
301000 -- (-833.119) (-804.828) (-819.249) [-803.203] * (-829.499) (-813.481) [-800.383] (-839.927) -- 0:08:03
302000 -- (-833.797) (-812.440) (-838.916) [-803.765] * (-835.358) (-804.024) (-830.593) [-815.168] -- 0:08:03
303000 -- (-813.672) (-818.809) (-837.933) [-808.068] * (-833.726) [-813.779] (-825.848) (-823.140) -- 0:08:03
304000 -- (-817.903) [-815.660] (-823.361) (-823.065) * (-827.698) [-805.908] (-815.749) (-804.085) -- 0:08:03
305000 -- (-823.302) [-807.470] (-823.090) (-834.080) * (-819.078) [-810.525] (-823.250) (-816.515) -- 0:08:00
Average standard deviation of split frequencies: 0.017668
306000 -- (-821.229) [-808.851] (-836.954) (-843.084) * (-815.166) [-808.744] (-822.422) (-838.684) -- 0:08:00
307000 -- (-822.124) [-809.817] (-825.845) (-812.176) * (-824.730) [-811.422] (-815.182) (-826.488) -- 0:08:00
308000 -- [-809.425] (-807.931) (-839.412) (-815.476) * (-813.126) (-810.941) [-810.016] (-814.846) -- 0:07:58
309000 -- (-819.421) [-804.106] (-831.660) (-828.503) * (-833.039) (-806.625) [-814.089] (-816.165) -- 0:07:58
310000 -- [-814.457] (-808.693) (-837.890) (-833.441) * (-835.436) [-815.753] (-796.038) (-828.854) -- 0:07:58
Average standard deviation of split frequencies: 0.017497
311000 -- (-822.480) (-824.256) [-819.208] (-823.306) * (-817.717) (-825.018) [-801.452] (-834.010) -- 0:07:56
312000 -- (-822.122) [-811.830] (-820.134) (-819.622) * (-839.635) (-809.971) [-808.763] (-841.569) -- 0:07:56
313000 -- (-816.115) [-813.008] (-819.040) (-826.278) * (-840.207) (-820.601) (-821.857) [-824.826] -- 0:07:56
314000 -- (-823.887) [-798.598] (-831.392) (-821.743) * (-813.270) [-815.634] (-828.128) (-825.705) -- 0:07:56
315000 -- (-822.618) [-804.914] (-814.285) (-830.422) * (-816.901) (-809.867) (-838.482) [-812.789] -- 0:07:54
Average standard deviation of split frequencies: 0.016876
316000 -- (-816.436) (-823.554) [-816.309] (-821.414) * (-821.265) [-812.841] (-822.213) (-808.219) -- 0:07:54
317000 -- [-816.638] (-830.136) (-812.296) (-836.631) * (-829.893) (-822.809) (-813.294) [-799.614] -- 0:07:54
318000 -- [-816.196] (-811.358) (-839.966) (-826.645) * [-813.590] (-822.040) (-820.133) (-814.966) -- 0:07:51
319000 -- [-811.111] (-834.670) (-832.970) (-812.049) * (-808.451) [-809.325] (-826.202) (-839.102) -- 0:07:51
320000 -- (-811.261) (-840.874) (-827.436) [-808.830] * (-823.515) [-807.891] (-840.042) (-818.225) -- 0:07:51
Average standard deviation of split frequencies: 0.016814
321000 -- [-807.383] (-831.108) (-839.374) (-813.204) * (-818.713) [-809.661] (-818.663) (-826.392) -- 0:07:49
322000 -- (-814.709) [-816.403] (-834.219) (-827.250) * [-806.420] (-822.646) (-826.493) (-817.991) -- 0:07:49
323000 -- (-836.930) [-807.707] (-814.798) (-834.739) * [-814.851] (-825.843) (-823.868) (-817.971) -- 0:07:49
324000 -- (-837.827) (-819.817) [-815.959] (-823.011) * (-821.419) (-813.700) [-817.054] (-835.158) -- 0:07:47
325000 -- (-856.321) [-812.470] (-819.370) (-830.053) * (-813.987) (-817.002) (-833.468) [-820.965] -- 0:07:47
Average standard deviation of split frequencies: 0.016765
326000 -- [-820.525] (-819.579) (-819.119) (-819.750) * (-832.974) [-811.211] (-833.788) (-816.870) -- 0:07:47
327000 -- (-828.987) (-822.772) (-830.544) [-806.962] * [-816.181] (-815.535) (-821.581) (-810.465) -- 0:07:45
328000 -- (-830.230) (-822.164) (-803.074) [-820.509] * [-819.390] (-828.196) (-823.545) (-830.698) -- 0:07:45
329000 -- (-810.993) (-834.725) (-802.448) [-814.650] * (-811.256) (-834.756) [-814.358] (-810.124) -- 0:07:45
330000 -- (-831.149) (-837.219) [-809.499] (-808.848) * (-812.664) (-837.420) [-813.445] (-838.480) -- 0:07:42
Average standard deviation of split frequencies: 0.017286
331000 -- (-846.441) (-822.551) (-809.182) [-798.623] * [-808.671] (-831.597) (-823.863) (-822.074) -- 0:07:42
332000 -- (-825.105) (-824.574) (-826.276) [-820.165] * [-814.080] (-819.553) (-834.545) (-834.864) -- 0:07:42
333000 -- (-822.281) (-826.116) (-850.387) [-810.473] * (-814.492) [-814.202] (-828.769) (-832.981) -- 0:07:42
334000 -- (-822.432) (-812.656) [-826.525] (-819.198) * [-807.568] (-807.061) (-831.513) (-811.765) -- 0:07:40
335000 -- [-823.367] (-816.752) (-832.777) (-834.440) * [-810.373] (-817.326) (-830.443) (-812.181) -- 0:07:40
Average standard deviation of split frequencies: 0.016924
336000 -- (-824.294) (-822.530) (-836.793) [-819.981] * (-814.662) (-820.691) [-809.809] (-817.181) -- 0:07:40
337000 -- (-829.812) [-814.348] (-834.257) (-819.363) * (-819.856) (-814.053) (-811.084) [-822.289] -- 0:07:38
338000 -- (-827.756) [-812.631] (-820.046) (-820.497) * (-836.807) (-821.070) (-826.810) [-815.478] -- 0:07:38
339000 -- (-835.450) (-812.193) [-818.508] (-820.064) * (-832.589) (-812.523) (-829.731) [-818.352] -- 0:07:38
340000 -- (-822.879) [-813.432] (-815.409) (-853.913) * (-803.598) (-810.416) (-840.145) [-818.272] -- 0:07:36
Average standard deviation of split frequencies: 0.016605
341000 -- (-806.289) [-810.561] (-812.432) (-841.699) * (-826.332) [-808.262] (-832.334) (-816.027) -- 0:07:36
342000 -- (-813.798) (-814.151) [-814.720] (-835.577) * (-832.393) (-823.377) (-822.720) [-822.079] -- 0:07:35
343000 -- (-820.889) (-827.496) [-827.202] (-817.967) * (-816.023) (-812.816) [-828.555] (-815.828) -- 0:07:33
344000 -- (-831.839) (-811.660) (-818.777) [-813.449] * (-820.060) [-806.256] (-821.216) (-804.240) -- 0:07:33
345000 -- [-822.244] (-820.689) (-822.040) (-821.935) * (-815.527) (-818.241) [-800.781] (-822.648) -- 0:07:33
Average standard deviation of split frequencies: 0.015625
346000 -- (-820.568) (-822.581) (-829.685) [-810.799] * (-817.416) (-820.160) (-810.415) [-814.115] -- 0:07:33
347000 -- (-820.520) (-815.224) (-806.092) [-813.430] * (-837.373) [-816.585] (-828.609) (-812.477) -- 0:07:31
348000 -- [-815.161] (-834.763) (-811.729) (-821.390) * (-817.560) [-800.860] (-804.682) (-823.813) -- 0:07:31
349000 -- [-807.845] (-815.050) (-821.632) (-820.238) * (-813.962) [-815.477] (-811.332) (-822.280) -- 0:07:31
350000 -- (-834.083) (-829.603) [-804.886] (-818.197) * (-816.629) (-836.483) (-805.336) [-806.785] -- 0:07:29
Average standard deviation of split frequencies: 0.014451
351000 -- (-826.530) [-816.162] (-815.345) (-830.644) * (-827.634) (-830.920) (-805.728) [-810.603] -- 0:07:29
352000 -- (-835.609) [-813.442] (-811.368) (-829.260) * (-820.360) (-814.807) (-815.399) [-815.264] -- 0:07:29
353000 -- (-832.987) (-815.762) (-839.071) [-815.943] * (-823.839) (-818.558) (-812.469) [-813.813] -- 0:07:27
354000 -- (-820.151) (-828.618) (-830.378) [-804.837] * (-818.017) (-848.407) (-829.567) [-810.711] -- 0:07:27
355000 -- (-833.133) (-831.970) (-833.790) [-809.818] * (-825.775) (-837.508) [-812.216] (-812.503) -- 0:07:26
Average standard deviation of split frequencies: 0.014442
356000 -- (-836.756) [-807.740] (-826.744) (-808.328) * (-812.163) (-828.423) (-814.981) [-807.559] -- 0:07:25
357000 -- [-812.403] (-826.583) (-820.622) (-818.578) * [-816.058] (-825.125) (-828.780) (-801.454) -- 0:07:24
358000 -- (-843.764) [-818.380] (-815.576) (-822.802) * (-835.489) [-822.367] (-825.330) (-812.895) -- 0:07:24
359000 -- (-819.902) (-823.774) (-820.063) [-819.442] * (-834.836) (-809.210) (-835.757) [-808.146] -- 0:07:22
360000 -- [-805.156] (-817.691) (-833.862) (-818.727) * (-828.789) [-797.723] (-818.508) (-806.044) -- 0:07:22
Average standard deviation of split frequencies: 0.015113
361000 -- (-816.866) (-833.696) [-810.852] (-819.257) * (-813.763) [-808.418] (-833.539) (-815.889) -- 0:07:22
362000 -- (-819.892) (-842.166) (-829.089) [-817.771] * [-814.900] (-835.298) (-839.787) (-828.415) -- 0:07:20
363000 -- (-827.359) [-799.717] (-846.970) (-824.052) * (-810.037) [-811.132] (-846.289) (-825.416) -- 0:07:20
364000 -- (-817.521) (-826.109) [-814.451] (-827.930) * (-828.455) (-805.932) [-825.131] (-825.498) -- 0:07:20
365000 -- (-817.040) [-809.537] (-827.837) (-814.416) * (-824.744) [-816.580] (-815.391) (-818.597) -- 0:07:18
Average standard deviation of split frequencies: 0.015134
366000 -- [-807.744] (-826.339) (-822.605) (-808.812) * (-811.850) (-826.317) (-821.190) [-810.613] -- 0:07:18
367000 -- (-819.019) (-829.778) (-810.563) [-814.938] * [-814.298] (-834.546) (-812.911) (-805.917) -- 0:07:18
368000 -- (-809.659) (-825.556) (-838.526) [-807.320] * (-832.630) (-834.140) [-801.910] (-809.865) -- 0:07:17
369000 -- (-818.258) (-811.252) (-823.834) [-812.511] * (-824.650) (-859.542) (-838.114) [-810.655] -- 0:07:16
370000 -- (-821.061) (-809.028) (-825.610) [-818.163] * [-816.049] (-827.435) (-846.770) (-798.641) -- 0:07:15
Average standard deviation of split frequencies: 0.015023
371000 -- (-819.581) [-814.393] (-838.129) (-819.743) * (-829.300) (-828.087) (-814.779) [-807.363] -- 0:07:15
372000 -- (-808.251) (-823.317) [-814.541] (-828.129) * (-847.992) [-810.626] (-825.164) (-805.888) -- 0:07:13
373000 -- [-816.299] (-820.953) (-816.693) (-833.941) * (-847.273) (-830.518) (-814.871) [-809.824] -- 0:07:13
374000 -- (-829.677) (-817.375) [-816.576] (-851.427) * (-824.533) [-814.712] (-820.541) (-821.440) -- 0:07:13
375000 -- (-822.505) [-808.452] (-823.698) (-841.402) * (-807.545) [-815.070] (-829.876) (-830.418) -- 0:07:11
Average standard deviation of split frequencies: 0.014692
376000 -- [-815.987] (-826.480) (-835.871) (-806.351) * (-822.820) [-811.876] (-835.374) (-824.253) -- 0:07:11
377000 -- (-829.958) (-820.153) (-856.934) [-822.676] * (-817.624) [-808.276] (-819.986) (-808.057) -- 0:07:11
378000 -- (-821.522) [-821.133] (-839.525) (-824.703) * (-825.124) [-812.448] (-818.150) (-813.107) -- 0:07:09
379000 -- (-814.454) (-822.782) (-835.974) [-805.943] * (-842.213) [-802.481] (-825.485) (-818.448) -- 0:07:09
380000 -- (-824.209) (-818.517) (-836.177) [-814.725] * (-826.497) (-802.116) [-804.221] (-807.987) -- 0:07:09
Average standard deviation of split frequencies: 0.014473
381000 -- (-809.995) (-814.656) (-820.970) [-808.483] * (-816.493) (-803.731) [-806.737] (-824.252) -- 0:07:08
382000 -- (-811.504) (-824.721) [-824.432] (-821.640) * (-823.058) [-810.190] (-812.100) (-823.298) -- 0:07:07
383000 -- [-809.398] (-836.830) (-837.431) (-818.744) * (-821.018) (-813.770) [-822.303] (-814.830) -- 0:07:06
384000 -- [-812.330] (-825.602) (-840.379) (-831.326) * [-814.000] (-829.302) (-826.113) (-820.146) -- 0:07:06
385000 -- (-822.075) (-841.877) [-828.543] (-819.071) * (-823.441) (-816.158) (-828.291) [-798.001] -- 0:07:04
Average standard deviation of split frequencies: 0.014579
386000 -- (-816.528) (-824.901) (-837.308) [-810.746] * (-817.803) [-815.072] (-812.285) (-831.106) -- 0:07:04
387000 -- (-819.769) (-831.238) (-839.347) [-808.254] * (-812.129) [-818.709] (-812.197) (-813.926) -- 0:07:04
388000 -- [-810.518] (-833.160) (-818.966) (-821.329) * (-826.685) [-815.778] (-811.754) (-830.875) -- 0:07:02
389000 -- (-814.867) (-823.709) [-820.571] (-834.981) * (-821.388) [-807.635] (-831.068) (-830.323) -- 0:07:02
390000 -- (-840.250) (-816.254) (-818.009) [-814.010] * (-840.038) [-818.899] (-824.040) (-835.670) -- 0:07:02
Average standard deviation of split frequencies: 0.014480
391000 -- [-806.109] (-824.583) (-845.099) (-836.060) * (-824.392) [-819.013] (-820.853) (-808.299) -- 0:07:02
392000 -- (-823.916) [-814.506] (-836.679) (-841.844) * [-798.906] (-816.679) (-816.671) (-827.842) -- 0:07:00
393000 -- [-802.997] (-810.429) (-831.437) (-827.235) * (-826.707) [-812.526] (-811.322) (-835.805) -- 0:07:00
394000 -- (-812.718) (-829.484) [-812.890] (-820.447) * (-824.219) [-804.434] (-830.928) (-805.441) -- 0:06:59
395000 -- (-817.049) (-835.696) [-808.396] (-826.423) * (-808.389) [-810.668] (-840.103) (-809.283) -- 0:06:58
Average standard deviation of split frequencies: 0.014248
396000 -- (-821.512) (-820.353) [-805.001] (-830.275) * (-821.462) (-817.220) (-832.518) [-809.127] -- 0:06:57
397000 -- [-816.899] (-835.881) (-813.816) (-847.378) * (-830.037) (-832.310) (-828.552) [-819.363] -- 0:06:57
398000 -- (-804.970) (-818.552) [-804.445] (-837.503) * (-819.736) (-820.961) [-823.146] (-823.842) -- 0:06:55
399000 -- (-861.432) (-825.982) [-810.948] (-842.271) * (-821.742) [-804.116] (-821.063) (-818.183) -- 0:06:55
400000 -- (-819.247) (-822.121) [-806.882] (-837.957) * (-827.414) [-825.363] (-821.488) (-833.350) -- 0:06:55
Average standard deviation of split frequencies: 0.014560
401000 -- (-831.106) (-835.441) [-816.529] (-824.678) * (-834.693) [-808.883] (-808.908) (-831.219) -- 0:06:55
402000 -- [-814.958] (-824.216) (-816.517) (-833.042) * (-840.571) (-807.203) [-812.785] (-820.047) -- 0:06:53
403000 -- (-817.747) (-828.769) [-806.769] (-840.662) * (-824.279) (-809.464) (-810.696) [-826.157] -- 0:06:53
404000 -- [-829.851] (-840.607) (-819.527) (-848.181) * [-830.503] (-815.118) (-835.596) (-834.072) -- 0:06:53
405000 -- [-815.724] (-836.330) (-822.516) (-821.748) * (-824.746) (-810.610) (-836.097) [-822.989] -- 0:06:51
Average standard deviation of split frequencies: 0.014477
406000 -- (-808.111) (-820.814) (-827.711) [-805.884] * [-806.786] (-819.228) (-832.250) (-809.116) -- 0:06:51
407000 -- (-823.977) (-827.000) (-837.039) [-828.102] * (-805.462) (-815.019) (-817.126) [-804.692] -- 0:06:50
408000 -- (-817.531) [-804.914] (-807.042) (-843.278) * [-811.543] (-814.407) (-828.908) (-824.016) -- 0:06:49
409000 -- (-812.447) (-823.893) [-807.743] (-843.998) * (-808.101) (-827.982) (-833.291) [-818.391] -- 0:06:48
410000 -- (-824.556) (-808.901) [-806.912] (-836.801) * [-818.102] (-817.755) (-825.601) (-813.443) -- 0:06:48
Average standard deviation of split frequencies: 0.014277
411000 -- (-834.055) (-810.101) [-814.492] (-846.169) * (-828.275) (-817.344) (-813.698) [-821.339] -- 0:06:46
412000 -- (-812.541) (-830.038) [-811.586] (-824.320) * (-834.050) (-839.790) (-819.604) [-811.165] -- 0:06:46
413000 -- (-833.224) (-834.454) [-801.219] (-830.700) * (-845.756) (-818.300) (-813.758) [-816.617] -- 0:06:46
414000 -- (-823.962) (-835.701) [-806.432] (-816.965) * (-827.682) (-832.038) [-806.715] (-821.759) -- 0:06:46
415000 -- (-849.334) (-823.027) (-813.195) [-822.713] * [-804.201] (-818.544) (-827.347) (-812.983) -- 0:06:44
Average standard deviation of split frequencies: 0.013704
416000 -- (-812.982) (-810.838) (-820.529) [-814.393] * [-806.227] (-821.648) (-832.246) (-810.797) -- 0:06:44
417000 -- (-836.253) (-820.076) [-807.619] (-815.186) * [-814.076] (-833.541) (-813.832) (-818.024) -- 0:06:44
418000 -- (-835.778) (-815.148) (-817.189) [-815.633] * (-819.773) (-827.582) (-814.797) [-814.988] -- 0:06:42
419000 -- (-818.187) (-830.910) [-815.437] (-821.564) * (-813.885) (-816.776) [-809.096] (-829.539) -- 0:06:42
420000 -- (-838.021) (-832.512) [-813.762] (-827.819) * (-810.881) (-818.714) [-816.346] (-826.383) -- 0:06:41
Average standard deviation of split frequencies: 0.013342
421000 -- (-833.310) (-824.005) (-822.781) [-807.952] * (-817.586) (-818.029) (-814.526) [-806.660] -- 0:06:40
422000 -- [-818.716] (-823.627) (-820.998) (-831.221) * (-819.613) (-811.679) (-838.498) [-807.865] -- 0:06:39
423000 -- [-819.450] (-817.639) (-816.079) (-832.550) * (-822.544) (-822.639) [-815.007] (-813.592) -- 0:06:39
424000 -- (-823.773) (-827.590) (-812.096) [-818.917] * (-809.874) (-816.070) (-809.032) [-815.537] -- 0:06:39
425000 -- (-819.986) (-819.980) [-805.008] (-838.522) * (-828.100) (-821.269) (-826.281) [-821.334] -- 0:06:37
Average standard deviation of split frequencies: 0.013417
426000 -- (-815.914) [-812.135] (-814.251) (-840.094) * (-844.038) (-807.876) (-813.134) [-805.499] -- 0:06:37
427000 -- [-817.315] (-817.835) (-809.999) (-824.343) * (-818.316) (-808.609) (-822.872) [-815.084] -- 0:06:37
428000 -- [-802.016] (-831.777) (-819.031) (-832.619) * (-825.903) (-804.124) (-835.166) [-814.030] -- 0:06:35
429000 -- (-822.050) (-823.233) (-821.924) [-825.543] * (-823.967) (-813.583) (-840.693) [-812.973] -- 0:06:35
430000 -- [-819.840] (-835.332) (-802.288) (-823.961) * (-820.809) [-816.355] (-833.660) (-830.822) -- 0:06:35
Average standard deviation of split frequencies: 0.013067
431000 -- [-820.117] (-831.360) (-808.501) (-823.995) * (-847.947) (-820.860) (-832.568) [-813.765] -- 0:06:33
432000 -- (-813.349) (-831.698) (-800.826) [-822.229] * (-822.510) (-816.110) (-829.305) [-819.105] -- 0:06:33
433000 -- (-851.195) (-827.783) [-803.087] (-825.578) * (-835.412) (-831.603) (-823.838) [-805.695] -- 0:06:32
434000 -- (-835.371) (-824.316) (-820.421) [-810.701] * (-820.493) (-806.492) (-839.482) [-815.993] -- 0:06:32
435000 -- (-828.164) (-844.654) (-813.551) [-816.182] * (-816.335) [-814.783] (-818.121) (-815.415) -- 0:06:30
Average standard deviation of split frequencies: 0.013312
436000 -- (-812.405) (-821.825) (-820.943) [-814.442] * (-809.838) (-837.788) (-813.195) [-803.537] -- 0:06:30
437000 -- (-828.777) (-831.313) (-817.249) [-813.723] * [-819.493] (-820.925) (-814.797) (-821.163) -- 0:06:30
438000 -- (-841.700) (-809.026) (-823.223) [-813.277] * (-817.738) [-813.742] (-816.956) (-819.993) -- 0:06:28
439000 -- (-826.017) (-820.247) (-813.541) [-814.729] * (-836.526) [-799.895] (-815.081) (-820.384) -- 0:06:28
440000 -- [-805.406] (-820.672) (-822.178) (-808.883) * (-835.792) (-807.231) (-817.862) [-813.875] -- 0:06:28
Average standard deviation of split frequencies: 0.013171
441000 -- [-805.358] (-835.050) (-816.365) (-805.910) * (-821.182) (-804.451) [-819.914] (-821.918) -- 0:06:26
442000 -- (-803.938) [-815.354] (-817.958) (-826.713) * (-817.106) [-807.646] (-811.634) (-833.943) -- 0:06:26
443000 -- (-819.655) (-830.669) [-818.184] (-842.993) * [-816.889] (-831.765) (-829.892) (-809.234) -- 0:06:26
444000 -- (-815.335) (-813.339) (-820.926) [-807.229] * (-829.473) (-823.915) [-812.742] (-821.214) -- 0:06:24
445000 -- (-808.254) [-811.019] (-827.981) (-809.883) * [-818.813] (-852.050) (-804.190) (-826.549) -- 0:06:24
Average standard deviation of split frequencies: 0.013014
446000 -- [-813.011] (-821.176) (-834.772) (-830.390) * (-821.140) (-840.558) (-824.015) [-817.971] -- 0:06:23
447000 -- [-810.784] (-848.854) (-813.449) (-833.845) * (-834.117) (-831.337) [-815.425] (-822.118) -- 0:06:23
448000 -- (-837.102) [-823.586] (-812.080) (-823.514) * (-830.855) [-811.988] (-807.370) (-830.102) -- 0:06:21
449000 -- [-806.890] (-812.216) (-833.766) (-820.966) * (-818.566) [-807.755] (-810.781) (-822.562) -- 0:06:21
450000 -- [-814.436] (-830.956) (-836.348) (-831.236) * (-815.783) (-812.597) (-805.968) [-832.865] -- 0:06:21
Average standard deviation of split frequencies: 0.013598
451000 -- [-806.081] (-819.560) (-818.691) (-829.557) * (-817.857) (-821.934) (-818.023) [-813.086] -- 0:06:19
452000 -- (-831.322) [-802.995] (-817.635) (-838.460) * (-816.165) (-825.545) (-826.653) [-800.052] -- 0:06:19
453000 -- (-817.672) [-823.491] (-818.803) (-838.852) * (-812.527) [-815.933] (-821.988) (-818.226) -- 0:06:19
454000 -- (-805.305) (-831.806) (-829.968) [-811.610] * (-807.574) [-808.434] (-840.705) (-828.181) -- 0:06:17
455000 -- (-816.411) [-807.807] (-839.471) (-817.457) * (-811.874) [-804.549] (-835.972) (-822.702) -- 0:06:17
Average standard deviation of split frequencies: 0.013730
456000 -- (-805.945) (-823.724) (-832.168) [-818.364] * (-834.283) [-811.121] (-813.933) (-822.249) -- 0:06:16
457000 -- (-818.325) (-824.880) (-826.375) [-814.772] * (-830.966) [-812.132] (-828.525) (-834.516) -- 0:06:15
458000 -- (-811.306) (-824.923) [-815.327] (-832.677) * [-807.541] (-812.391) (-831.383) (-829.126) -- 0:06:15
459000 -- (-817.387) (-828.669) [-810.538] (-828.790) * (-810.123) (-809.847) (-835.451) [-829.945] -- 0:06:14
460000 -- (-814.841) [-824.881] (-807.850) (-826.700) * (-803.647) (-814.129) (-821.206) [-824.095] -- 0:06:13
Average standard deviation of split frequencies: 0.012823
461000 -- (-826.709) [-824.168] (-814.187) (-815.555) * [-810.911] (-813.575) (-822.724) (-822.686) -- 0:06:12
462000 -- (-845.859) [-823.705] (-828.680) (-815.232) * [-801.932] (-824.391) (-828.666) (-815.869) -- 0:06:12
463000 -- (-833.243) (-819.320) [-799.715] (-825.735) * (-814.115) [-817.173] (-825.729) (-821.032) -- 0:06:12
464000 -- (-834.841) (-827.030) (-817.051) [-805.660] * [-816.042] (-827.405) (-834.836) (-830.859) -- 0:06:10
465000 -- (-836.043) (-816.638) [-822.352] (-811.037) * (-822.158) (-818.329) (-832.888) [-809.488] -- 0:06:10
Average standard deviation of split frequencies: 0.012708
466000 -- (-832.678) (-822.317) (-824.608) [-797.715] * (-826.311) (-821.085) (-821.299) [-822.941] -- 0:06:10
467000 -- (-829.489) (-821.865) (-827.558) [-797.101] * (-803.304) [-809.315] (-826.424) (-859.648) -- 0:06:08
468000 -- (-821.676) (-814.903) (-827.670) [-827.136] * (-827.470) (-824.806) [-818.775] (-821.729) -- 0:06:08
469000 -- (-827.015) (-828.919) (-838.684) [-812.425] * [-815.450] (-817.642) (-811.151) (-843.625) -- 0:06:07
470000 -- [-825.756] (-836.919) (-824.690) (-822.958) * [-803.889] (-828.289) (-818.740) (-821.304) -- 0:06:06
Average standard deviation of split frequencies: 0.012770
471000 -- (-825.689) (-831.450) (-830.489) [-805.689] * (-812.264) [-813.916] (-822.901) (-810.545) -- 0:06:06
472000 -- (-826.995) (-810.650) (-830.042) [-811.092] * (-807.578) (-821.552) (-821.823) [-814.561] -- 0:06:05
473000 -- (-812.674) [-807.237] (-826.108) (-812.125) * (-819.087) (-817.103) [-804.899] (-808.690) -- 0:06:04
474000 -- (-811.579) [-807.997] (-823.018) (-812.561) * (-816.265) (-830.711) [-802.210] (-819.167) -- 0:06:03
475000 -- (-823.416) (-825.644) [-811.574] (-834.182) * (-817.885) [-817.707] (-818.752) (-821.552) -- 0:06:03
Average standard deviation of split frequencies: 0.013215
476000 -- [-814.362] (-816.021) (-840.645) (-831.603) * (-824.934) [-807.571] (-827.882) (-827.132) -- 0:06:02
477000 -- [-803.677] (-842.262) (-828.223) (-833.250) * (-808.477) (-807.557) [-808.913] (-833.453) -- 0:06:01
478000 -- (-811.309) (-821.147) [-812.839] (-821.941) * (-813.546) [-808.805] (-830.916) (-824.855) -- 0:06:01
479000 -- [-814.351] (-811.173) (-836.323) (-823.411) * (-844.530) [-804.390] (-827.879) (-821.695) -- 0:06:00
480000 -- [-807.056] (-825.183) (-823.796) (-816.355) * (-832.946) [-804.161] (-832.677) (-809.706) -- 0:05:59
Average standard deviation of split frequencies: 0.013240
481000 -- (-818.092) (-824.339) (-822.518) [-805.773] * (-814.039) [-810.420] (-847.162) (-824.990) -- 0:05:59
482000 -- (-822.226) (-831.589) (-822.299) [-809.758] * (-839.259) (-821.973) (-817.351) [-812.472] -- 0:05:58
483000 -- (-845.338) (-842.439) [-822.873] (-812.796) * (-835.426) (-815.840) (-819.418) [-815.723] -- 0:05:57
484000 -- (-814.692) (-849.067) [-808.949] (-810.196) * (-841.337) [-803.947] (-821.624) (-817.778) -- 0:05:57
485000 -- (-820.929) (-827.022) (-811.414) [-811.599] * (-833.893) (-812.001) (-822.097) [-812.893] -- 0:05:56
Average standard deviation of split frequencies: 0.012306
486000 -- (-827.593) (-819.543) (-823.201) [-819.667] * (-833.776) [-817.735] (-835.138) (-823.507) -- 0:05:55
487000 -- (-828.852) [-822.485] (-824.153) (-809.001) * (-830.562) (-824.936) (-826.815) [-805.933] -- 0:05:54
488000 -- (-815.552) [-811.081] (-823.505) (-812.300) * (-823.812) (-828.380) (-818.015) [-810.918] -- 0:05:54
489000 -- [-812.557] (-814.835) (-822.222) (-815.495) * (-832.418) (-825.666) [-814.245] (-814.617) -- 0:05:53
490000 -- (-833.430) (-818.612) (-813.292) [-810.845] * (-841.655) (-844.074) (-816.991) [-821.937] -- 0:05:52
Average standard deviation of split frequencies: 0.012610
491000 -- (-837.515) (-829.288) (-812.761) [-806.147] * (-834.965) (-815.735) (-825.062) [-810.422] -- 0:05:52
492000 -- (-833.655) (-834.967) (-816.215) [-798.513] * (-830.761) (-831.435) (-828.279) [-820.383] -- 0:05:52
493000 -- (-827.043) [-820.580] (-825.029) (-816.562) * (-825.892) [-819.141] (-826.393) (-811.446) -- 0:05:50
494000 -- (-832.929) [-817.868] (-816.918) (-811.089) * (-819.336) [-812.490] (-861.181) (-812.565) -- 0:05:50
495000 -- [-808.057] (-806.055) (-841.011) (-817.802) * (-823.114) [-811.846] (-824.210) (-812.503) -- 0:05:49
Average standard deviation of split frequencies: 0.011910
496000 -- [-807.785] (-816.810) (-832.485) (-818.673) * (-816.100) (-809.620) (-844.421) [-821.225] -- 0:05:48
497000 -- (-824.561) [-803.538] (-808.341) (-807.357) * (-823.913) [-806.463] (-840.768) (-815.676) -- 0:05:48
498000 -- (-815.364) (-820.652) (-824.297) [-815.237] * (-829.255) (-807.190) [-829.349] (-840.119) -- 0:05:47
499000 -- [-813.302] (-817.551) (-806.255) (-803.591) * (-828.067) [-808.532] (-820.914) (-839.782) -- 0:05:46
500000 -- (-838.373) [-803.436] (-810.165) (-802.828) * (-811.232) (-822.631) [-820.784] (-828.090) -- 0:05:46
Average standard deviation of split frequencies: 0.011681
501000 -- (-805.236) (-815.473) [-812.358] (-835.244) * (-807.361) (-827.796) [-819.622] (-811.407) -- 0:05:45
502000 -- [-804.269] (-818.237) (-813.505) (-835.881) * (-813.199) (-820.403) [-812.039] (-828.990) -- 0:05:45
503000 -- [-808.151] (-831.526) (-818.642) (-811.840) * (-828.063) (-835.726) [-800.265] (-813.822) -- 0:05:43
504000 -- (-826.726) [-809.192] (-818.803) (-812.682) * (-824.331) (-846.593) (-823.612) [-821.207] -- 0:05:43
505000 -- (-829.840) (-813.956) (-839.125) [-818.558] * (-837.109) (-837.845) [-824.534] (-814.870) -- 0:05:43
Average standard deviation of split frequencies: 0.010976
506000 -- (-843.609) [-806.392] (-823.674) (-818.098) * (-832.258) (-861.952) [-813.528] (-829.949) -- 0:05:41
507000 -- (-829.805) (-803.480) (-834.286) [-811.032] * (-812.740) (-839.529) [-808.935] (-840.364) -- 0:05:41
508000 -- (-835.885) [-806.360] (-845.004) (-812.221) * (-816.340) [-825.953] (-817.516) (-814.826) -- 0:05:40
509000 -- (-823.201) [-803.739] (-834.283) (-821.455) * (-810.364) [-812.464] (-825.184) (-835.432) -- 0:05:39
510000 -- [-812.272] (-835.473) (-845.450) (-822.818) * (-833.395) [-806.605] (-822.416) (-809.649) -- 0:05:39
Average standard deviation of split frequencies: 0.011625
511000 -- (-824.675) (-814.834) (-819.089) [-822.787] * (-837.655) [-808.769] (-828.143) (-814.149) -- 0:05:38
512000 -- (-822.348) [-810.353] (-811.131) (-813.073) * (-820.840) (-822.097) [-809.786] (-813.110) -- 0:05:38
513000 -- (-816.733) (-834.555) [-806.366] (-812.469) * (-824.187) [-812.038] (-825.662) (-819.538) -- 0:05:37
514000 -- [-816.409] (-831.424) (-812.335) (-808.182) * (-812.027) (-834.179) [-803.897] (-845.305) -- 0:05:36
515000 -- (-822.688) (-816.563) [-810.224] (-828.890) * [-803.181] (-834.755) (-806.503) (-824.726) -- 0:05:36
Average standard deviation of split frequencies: 0.011534
516000 -- (-816.536) (-834.719) (-811.195) [-803.332] * [-801.698] (-839.021) (-813.831) (-809.814) -- 0:05:34
517000 -- (-837.106) [-815.523] (-812.700) (-813.480) * [-804.619] (-825.382) (-820.465) (-817.073) -- 0:05:34
518000 -- (-837.694) (-822.770) [-806.427] (-814.783) * [-816.884] (-814.925) (-828.283) (-826.414) -- 0:05:34
519000 -- (-826.562) (-830.294) [-809.368] (-812.925) * [-810.045] (-818.744) (-841.293) (-826.641) -- 0:05:32
520000 -- (-822.374) (-820.836) (-819.124) [-813.218] * (-807.958) (-812.634) [-819.870] (-823.305) -- 0:05:32
Average standard deviation of split frequencies: 0.010751
521000 -- (-827.276) (-827.577) [-811.453] (-836.117) * (-819.869) [-810.101] (-826.348) (-826.295) -- 0:05:31
522000 -- (-827.318) (-829.816) (-815.532) [-807.576] * (-802.283) [-805.364] (-829.104) (-831.504) -- 0:05:30
523000 -- [-811.426] (-843.910) (-822.788) (-824.210) * (-822.518) [-808.867] (-843.695) (-813.102) -- 0:05:30
524000 -- (-823.800) (-844.990) (-810.598) [-805.233] * [-817.361] (-806.200) (-834.297) (-823.098) -- 0:05:29
525000 -- (-805.477) (-808.836) (-842.633) [-815.858] * (-820.752) (-826.753) (-839.153) [-809.250] -- 0:05:29
Average standard deviation of split frequencies: 0.010250
526000 -- (-815.288) [-800.683] (-820.240) (-827.975) * (-824.198) (-835.502) [-806.037] (-823.255) -- 0:05:28
527000 -- (-818.117) [-805.998] (-818.273) (-841.311) * [-817.797] (-817.489) (-817.154) (-820.144) -- 0:05:27
528000 -- (-820.494) [-805.261] (-822.825) (-838.424) * (-840.681) (-806.997) [-818.601] (-812.938) -- 0:05:27
529000 -- (-802.642) (-825.606) [-825.322] (-825.668) * (-834.123) (-833.163) [-813.418] (-826.485) -- 0:05:25
530000 -- (-826.872) [-826.774] (-812.034) (-836.072) * (-817.905) (-818.787) (-813.189) [-806.176] -- 0:05:25
Average standard deviation of split frequencies: 0.010521
531000 -- (-808.897) (-819.545) [-816.805] (-835.030) * [-813.061] (-828.867) (-811.893) (-811.293) -- 0:05:25
532000 -- (-822.860) [-813.401] (-807.909) (-818.238) * [-819.535] (-819.948) (-819.873) (-811.666) -- 0:05:23
533000 -- (-827.744) [-819.575] (-810.772) (-843.566) * (-805.104) (-809.885) (-837.504) [-809.652] -- 0:05:23
534000 -- (-822.543) [-812.083] (-808.046) (-817.879) * (-803.663) (-805.700) (-825.371) [-817.286] -- 0:05:22
535000 -- (-826.065) [-815.653] (-809.506) (-815.871) * (-821.737) (-831.669) (-824.288) [-805.733] -- 0:05:22
Average standard deviation of split frequencies: 0.011241
536000 -- (-818.834) [-812.227] (-819.787) (-815.518) * [-816.770] (-822.122) (-820.396) (-813.501) -- 0:05:21
537000 -- (-814.543) (-823.843) (-835.061) [-810.868] * [-813.137] (-820.866) (-818.378) (-834.587) -- 0:05:20
538000 -- (-814.256) [-804.825] (-813.038) (-829.969) * [-822.534] (-819.501) (-822.583) (-820.520) -- 0:05:20
539000 -- (-803.919) (-811.349) (-825.438) [-808.223] * (-823.953) [-826.266] (-805.665) (-824.921) -- 0:05:19
540000 -- (-805.416) (-810.001) (-835.853) [-801.056] * [-814.795] (-823.025) (-816.269) (-830.090) -- 0:05:18
Average standard deviation of split frequencies: 0.011171
541000 -- (-815.473) [-805.435] (-834.448) (-828.068) * (-826.083) [-823.329] (-818.645) (-839.444) -- 0:05:18
542000 -- (-831.908) [-809.633] (-853.938) (-815.078) * (-823.045) (-815.589) [-815.569] (-842.486) -- 0:05:16
543000 -- (-818.398) (-820.821) (-823.053) [-819.205] * (-842.975) [-820.851] (-821.170) (-809.597) -- 0:05:16
544000 -- [-809.587] (-827.122) (-823.846) (-816.495) * (-829.254) [-808.082] (-828.680) (-811.825) -- 0:05:16
545000 -- (-824.395) (-817.779) (-828.344) [-820.804] * (-825.032) [-814.987] (-818.115) (-831.785) -- 0:05:14
Average standard deviation of split frequencies: 0.011062
546000 -- (-815.364) [-815.256] (-835.011) (-823.992) * (-840.323) (-827.571) [-813.525] (-820.711) -- 0:05:14
547000 -- (-824.112) (-811.482) [-819.896] (-812.781) * (-831.612) [-810.531] (-815.081) (-838.222) -- 0:05:13
548000 -- (-844.786) (-824.813) (-811.566) [-814.876] * [-813.596] (-819.407) (-827.545) (-821.771) -- 0:05:12
549000 -- (-826.082) (-833.979) [-803.860] (-814.370) * [-814.631] (-811.878) (-818.939) (-823.583) -- 0:05:12
550000 -- [-805.371] (-813.578) (-802.045) (-839.392) * (-832.823) (-801.941) [-822.125] (-814.253) -- 0:05:11
Average standard deviation of split frequencies: 0.010968
551000 -- (-815.109) (-818.616) [-807.903] (-828.279) * (-811.004) [-808.636] (-828.549) (-808.316) -- 0:05:11
552000 -- (-819.524) (-807.544) [-802.664] (-831.031) * (-819.528) (-831.977) (-823.756) [-821.669] -- 0:05:10
553000 -- [-808.100] (-803.810) (-818.459) (-825.168) * (-818.359) [-816.456] (-819.880) (-832.391) -- 0:05:09
554000 -- (-835.330) (-817.644) [-801.764] (-830.785) * (-823.208) [-808.801] (-826.396) (-822.378) -- 0:05:09
555000 -- (-807.023) (-831.910) [-808.747] (-835.555) * (-827.234) [-810.455] (-830.716) (-823.730) -- 0:05:07
Average standard deviation of split frequencies: 0.011446
556000 -- [-816.231] (-822.592) (-806.676) (-832.909) * (-830.539) [-806.962] (-825.460) (-847.047) -- 0:05:07
557000 -- (-816.327) (-835.746) [-803.132] (-838.314) * (-809.652) [-806.087] (-831.507) (-822.631) -- 0:05:06
558000 -- (-824.771) (-841.798) [-799.618] (-815.226) * (-809.960) [-807.125] (-805.632) (-845.914) -- 0:05:05
559000 -- (-823.865) (-825.361) [-809.519] (-811.148) * (-808.134) [-808.644] (-819.029) (-846.782) -- 0:05:05
560000 -- [-813.364] (-827.671) (-837.006) (-832.491) * [-810.556] (-828.960) (-811.155) (-835.911) -- 0:05:04
Average standard deviation of split frequencies: 0.011324
561000 -- (-821.673) (-800.752) [-830.675] (-827.397) * (-819.424) (-837.030) (-808.993) [-820.123] -- 0:05:03
562000 -- (-810.542) (-798.937) [-803.864] (-827.342) * (-819.047) (-805.936) [-819.319] (-825.853) -- 0:05:03
563000 -- [-815.998] (-816.155) (-813.897) (-856.400) * (-826.758) (-827.611) (-812.066) [-825.476] -- 0:05:02
564000 -- (-821.845) (-819.718) [-811.088] (-861.125) * (-821.501) (-832.246) [-811.592] (-816.557) -- 0:05:01
565000 -- (-825.032) (-825.289) [-809.039] (-838.643) * (-817.885) (-813.598) [-811.606] (-841.991) -- 0:05:01
Average standard deviation of split frequencies: 0.011478
566000 -- (-805.889) (-830.785) [-805.087] (-842.811) * (-818.718) [-802.903] (-828.806) (-847.311) -- 0:05:00
567000 -- (-802.968) (-839.766) [-801.475] (-816.088) * [-818.593] (-827.673) (-823.561) (-827.187) -- 0:05:00
568000 -- [-802.501] (-837.932) (-822.728) (-813.354) * (-808.706) [-793.792] (-827.605) (-837.443) -- 0:04:58
569000 -- (-809.858) (-835.963) [-800.714] (-819.162) * (-821.268) [-809.993] (-841.509) (-826.625) -- 0:04:58
570000 -- [-817.463] (-838.742) (-825.790) (-837.168) * (-796.602) [-808.280] (-833.756) (-834.330) -- 0:04:57
Average standard deviation of split frequencies: 0.011487
571000 -- [-806.973] (-827.545) (-809.551) (-831.754) * [-802.573] (-813.458) (-824.836) (-826.167) -- 0:04:56
572000 -- [-807.639] (-813.199) (-812.898) (-837.198) * [-815.866] (-813.839) (-819.717) (-821.188) -- 0:04:56
573000 -- (-831.508) [-806.444] (-819.366) (-826.030) * (-825.830) (-822.428) [-820.714] (-833.956) -- 0:04:55
574000 -- (-823.016) (-819.027) [-807.455] (-830.201) * (-829.678) [-814.941] (-823.236) (-836.693) -- 0:04:54
575000 -- (-811.441) (-819.577) (-820.595) [-813.318] * (-818.865) (-814.223) (-832.565) [-810.249] -- 0:04:54
Average standard deviation of split frequencies: 0.011483
576000 -- [-807.755] (-812.924) (-826.690) (-835.805) * (-819.290) (-822.332) [-829.891] (-831.371) -- 0:04:53
577000 -- [-808.187] (-816.334) (-851.797) (-818.119) * (-821.375) [-797.125] (-832.348) (-830.919) -- 0:04:52
578000 -- (-807.334) [-806.962] (-823.531) (-821.213) * [-801.555] (-818.601) (-833.087) (-816.855) -- 0:04:52
579000 -- (-821.964) (-820.986) (-835.670) [-807.876] * [-813.988] (-817.487) (-823.290) (-817.946) -- 0:04:51
580000 -- (-814.130) (-825.117) (-831.611) [-807.251] * [-824.999] (-809.320) (-827.189) (-810.937) -- 0:04:50
Average standard deviation of split frequencies: 0.010808
581000 -- (-810.610) (-823.613) (-852.532) [-814.315] * (-840.349) (-804.248) (-830.788) [-811.865] -- 0:04:49
582000 -- [-821.571] (-834.490) (-839.827) (-832.486) * [-807.398] (-827.485) (-823.048) (-813.503) -- 0:04:49
583000 -- (-822.015) (-833.154) [-812.484] (-809.343) * (-832.416) (-823.825) [-807.196] (-828.342) -- 0:04:48
584000 -- (-810.253) (-845.790) (-819.979) [-818.871] * [-808.273] (-819.335) (-816.815) (-812.136) -- 0:04:47
585000 -- (-802.326) (-830.133) (-818.120) [-805.472] * (-841.947) (-811.027) [-815.623] (-832.268) -- 0:04:47
Average standard deviation of split frequencies: 0.010709
586000 -- (-817.768) (-825.494) (-814.254) [-815.268] * (-822.961) [-805.712] (-830.821) (-833.521) -- 0:04:46
587000 -- (-829.766) (-819.781) [-818.361] (-815.430) * (-814.320) (-815.610) [-825.813] (-850.341) -- 0:04:45
588000 -- (-834.643) (-809.042) (-811.730) [-801.016] * [-827.226] (-807.489) (-847.301) (-821.469) -- 0:04:45
589000 -- (-809.051) (-825.300) (-819.042) [-808.398] * [-824.001] (-805.422) (-833.340) (-830.822) -- 0:04:44
590000 -- (-828.801) (-831.068) (-812.371) [-801.893] * [-806.894] (-800.821) (-830.779) (-831.730) -- 0:04:43
Average standard deviation of split frequencies: 0.011123
591000 -- (-807.641) (-832.778) (-825.431) [-797.098] * [-818.295] (-811.711) (-818.757) (-828.452) -- 0:04:43
592000 -- (-812.787) [-814.564] (-817.181) (-808.029) * (-824.732) (-819.161) [-817.726] (-828.364) -- 0:04:42
593000 -- (-813.673) [-804.524] (-810.718) (-817.462) * (-818.547) [-811.848] (-837.783) (-829.096) -- 0:04:41
594000 -- (-840.728) [-808.850] (-812.833) (-819.687) * (-812.754) (-825.908) [-808.789] (-814.915) -- 0:04:40
595000 -- (-821.918) (-825.396) [-815.192] (-837.685) * [-817.266] (-813.894) (-832.831) (-822.705) -- 0:04:40
Average standard deviation of split frequencies: 0.011147
596000 -- (-821.915) [-820.433] (-808.965) (-812.246) * (-819.991) [-813.183] (-823.585) (-838.085) -- 0:04:39
597000 -- (-809.018) [-810.012] (-819.203) (-825.978) * [-813.098] (-819.800) (-820.182) (-835.181) -- 0:04:38
598000 -- (-832.374) (-807.680) (-824.376) [-816.056] * (-827.594) (-825.236) (-827.396) [-814.663] -- 0:04:38
599000 -- (-822.227) (-820.909) (-814.507) [-808.617] * (-822.508) (-817.750) (-853.160) [-816.156] -- 0:04:37
600000 -- (-826.597) (-835.027) (-823.295) [-802.972] * (-804.749) [-810.340] (-834.206) (-818.477) -- 0:04:36
Average standard deviation of split frequencies: 0.010791
601000 -- (-825.663) (-828.819) [-818.999] (-821.831) * [-812.657] (-811.587) (-810.541) (-832.778) -- 0:04:36
602000 -- [-814.618] (-821.775) (-826.882) (-823.144) * (-827.965) (-835.015) [-797.187] (-825.799) -- 0:04:35
603000 -- (-821.478) (-808.993) [-807.424] (-815.652) * (-812.381) (-817.497) [-810.015] (-843.831) -- 0:04:34
604000 -- (-843.694) (-806.168) (-820.273) [-815.608] * (-832.254) (-815.538) [-816.399] (-836.969) -- 0:04:34
605000 -- [-806.908] (-819.131) (-841.023) (-813.555) * (-819.320) (-805.910) [-819.757] (-837.118) -- 0:04:33
Average standard deviation of split frequencies: 0.010088
606000 -- (-820.966) (-810.908) [-802.193] (-846.167) * (-818.070) [-809.438] (-813.558) (-846.733) -- 0:04:32
607000 -- (-833.932) [-806.248] (-836.219) (-819.738) * [-805.955] (-809.683) (-828.685) (-833.292) -- 0:04:31
608000 -- (-819.740) (-841.443) [-819.064] (-821.390) * (-806.647) (-823.697) (-832.973) [-825.880] -- 0:04:31
609000 -- (-804.750) [-815.889] (-815.637) (-841.929) * (-818.148) [-819.142] (-823.553) (-826.382) -- 0:04:30
610000 -- (-826.431) (-822.214) [-819.210] (-824.291) * (-816.027) [-812.331] (-815.870) (-837.073) -- 0:04:29
Average standard deviation of split frequencies: 0.010011
611000 -- (-809.706) [-805.188] (-809.996) (-811.984) * [-814.726] (-818.971) (-814.664) (-825.481) -- 0:04:29
612000 -- (-816.251) [-795.763] (-826.384) (-818.861) * (-819.077) (-824.996) (-832.182) [-813.446] -- 0:04:28
613000 -- [-819.362] (-815.067) (-851.551) (-814.891) * (-829.031) (-836.074) (-802.814) [-806.584] -- 0:04:27
614000 -- (-827.725) (-831.551) [-800.896] (-829.348) * (-819.242) (-838.012) [-800.837] (-810.766) -- 0:04:27
615000 -- (-813.073) (-829.266) (-809.246) [-817.658] * (-805.522) (-825.533) [-816.196] (-823.933) -- 0:04:26
Average standard deviation of split frequencies: 0.009996
616000 -- [-819.709] (-827.236) (-811.767) (-817.387) * (-826.583) (-838.953) [-811.629] (-827.101) -- 0:04:25
617000 -- (-822.225) [-808.094] (-808.989) (-834.764) * (-827.929) (-832.314) (-832.406) [-828.437] -- 0:04:25
618000 -- (-814.506) [-822.212] (-811.527) (-826.801) * [-821.176] (-834.295) (-818.576) (-821.291) -- 0:04:24
619000 -- (-820.757) [-807.991] (-809.596) (-826.417) * (-816.989) (-828.860) (-838.431) [-807.117] -- 0:04:23
620000 -- [-807.303] (-813.151) (-809.279) (-813.518) * (-807.433) (-815.982) (-820.031) [-803.482] -- 0:04:22
Average standard deviation of split frequencies: 0.010609
621000 -- (-817.268) (-823.698) [-805.687] (-817.078) * [-800.929] (-831.214) (-815.620) (-813.922) -- 0:04:22
622000 -- (-826.352) [-804.548] (-803.099) (-814.040) * [-813.002] (-836.508) (-805.970) (-819.489) -- 0:04:21
623000 -- [-803.655] (-812.645) (-803.670) (-828.766) * (-814.641) (-846.915) [-796.899] (-811.656) -- 0:04:20
624000 -- [-808.838] (-828.893) (-804.304) (-840.578) * (-812.360) (-843.447) [-816.941] (-842.109) -- 0:04:20
625000 -- (-828.630) [-821.211] (-825.472) (-828.206) * [-808.097] (-831.637) (-811.770) (-836.469) -- 0:04:19
Average standard deviation of split frequencies: 0.011037
626000 -- [-818.191] (-824.786) (-830.446) (-802.866) * (-823.103) [-817.244] (-807.563) (-844.564) -- 0:04:18
627000 -- (-825.559) (-824.008) (-832.320) [-813.685] * [-815.166] (-811.520) (-811.752) (-842.688) -- 0:04:18
628000 -- (-823.185) (-819.610) (-834.589) [-811.146] * (-819.157) [-808.390] (-823.414) (-831.348) -- 0:04:17
629000 -- (-814.724) (-814.243) [-820.079] (-835.860) * (-820.949) [-813.254] (-818.069) (-843.845) -- 0:04:16
630000 -- [-808.614] (-825.980) (-811.464) (-801.409) * (-821.187) [-813.363] (-818.043) (-843.716) -- 0:04:16
Average standard deviation of split frequencies: 0.010488
631000 -- (-828.180) (-822.606) [-815.026] (-824.326) * (-831.122) [-816.935] (-818.270) (-837.704) -- 0:04:15
632000 -- (-829.302) (-808.036) [-809.023] (-801.184) * (-821.177) [-804.035] (-819.403) (-839.427) -- 0:04:15
633000 -- [-806.664] (-818.741) (-814.042) (-815.746) * (-814.627) [-811.282] (-809.690) (-836.525) -- 0:04:13
634000 -- (-822.782) (-810.165) [-815.421] (-833.566) * (-831.840) (-814.645) [-805.847] (-821.293) -- 0:04:13
635000 -- (-817.309) [-809.916] (-845.564) (-828.600) * (-826.394) (-818.276) (-818.401) [-801.920] -- 0:04:12
Average standard deviation of split frequencies: 0.010817
636000 -- (-818.115) [-801.253] (-826.237) (-832.670) * [-815.328] (-801.112) (-830.106) (-812.832) -- 0:04:11
637000 -- (-819.942) [-812.900] (-810.503) (-833.771) * (-816.866) [-818.963] (-817.251) (-815.007) -- 0:04:11
638000 -- (-810.881) (-834.410) (-807.105) [-815.932] * (-806.650) (-831.077) (-830.143) [-804.086] -- 0:04:10
639000 -- (-825.622) (-824.621) [-807.589] (-822.363) * (-823.711) (-828.248) (-823.925) [-827.170] -- 0:04:09
640000 -- (-807.239) [-798.162] (-827.589) (-828.449) * (-809.070) [-808.816] (-817.318) (-834.587) -- 0:04:09
Average standard deviation of split frequencies: 0.010255
641000 -- (-824.617) [-806.017] (-847.531) (-811.244) * (-820.320) (-850.102) (-831.960) [-824.097] -- 0:04:08
642000 -- (-818.818) [-815.185] (-837.775) (-812.838) * (-832.342) [-814.590] (-829.776) (-824.362) -- 0:04:07
643000 -- (-821.000) (-827.442) [-831.114] (-821.203) * [-800.886] (-816.565) (-803.880) (-842.852) -- 0:04:07
644000 -- [-807.819] (-818.509) (-825.435) (-837.206) * (-809.575) [-808.942] (-810.619) (-827.061) -- 0:04:06
645000 -- (-817.079) (-819.395) [-804.916] (-853.757) * (-821.298) [-813.676] (-805.208) (-824.094) -- 0:04:06
Average standard deviation of split frequencies: 0.009486
646000 -- (-824.275) (-815.749) [-804.284] (-831.506) * (-833.274) (-803.848) (-827.078) [-814.986] -- 0:04:04
647000 -- [-809.271] (-827.396) (-813.030) (-826.678) * (-824.160) (-821.231) (-837.948) [-822.698] -- 0:04:04
648000 -- (-818.678) (-826.540) [-808.524] (-836.620) * [-807.939] (-822.928) (-824.687) (-822.300) -- 0:04:03
649000 -- (-809.753) (-827.338) [-808.431] (-811.634) * [-815.805] (-836.543) (-808.897) (-833.946) -- 0:04:02
650000 -- [-812.372] (-814.498) (-824.692) (-811.760) * [-807.207] (-817.902) (-817.242) (-832.733) -- 0:04:02
Average standard deviation of split frequencies: 0.009305
651000 -- [-810.753] (-821.948) (-827.593) (-818.502) * (-816.031) (-834.450) (-813.421) [-800.561] -- 0:04:01
652000 -- (-822.786) [-815.537] (-841.333) (-823.771) * (-838.628) (-808.090) (-824.470) [-798.471] -- 0:04:00
653000 -- (-813.637) [-806.956] (-825.020) (-818.704) * (-826.463) (-817.407) [-820.901] (-818.221) -- 0:04:00
654000 -- [-802.101] (-827.788) (-808.505) (-833.792) * (-834.803) [-807.504] (-808.055) (-828.439) -- 0:03:59
655000 -- [-812.498] (-813.802) (-836.228) (-817.941) * (-827.688) [-807.431] (-813.407) (-815.949) -- 0:03:59
Average standard deviation of split frequencies: 0.009409
656000 -- (-804.667) [-807.165] (-853.121) (-827.468) * (-833.201) (-814.104) (-810.961) [-823.812] -- 0:03:58
657000 -- (-828.304) (-809.057) [-813.675] (-824.624) * (-800.977) (-819.205) [-817.589] (-830.399) -- 0:03:57
658000 -- (-827.130) [-810.551] (-813.539) (-823.631) * [-813.985] (-823.632) (-811.745) (-812.545) -- 0:03:57
659000 -- (-814.236) (-818.608) (-823.676) [-821.270] * (-817.328) (-820.776) [-808.933] (-839.275) -- 0:03:55
660000 -- (-812.367) [-800.789] (-828.311) (-807.880) * (-811.769) (-801.067) [-809.559] (-822.324) -- 0:03:55
Average standard deviation of split frequencies: 0.009900
661000 -- (-810.239) [-810.744] (-809.281) (-808.368) * (-832.537) (-812.661) (-831.112) [-810.754] -- 0:03:54
662000 -- (-817.452) [-810.841] (-840.247) (-840.759) * [-812.519] (-822.560) (-816.432) (-831.897) -- 0:03:53
663000 -- (-830.938) [-810.686] (-822.258) (-821.810) * (-816.872) [-816.514] (-819.632) (-829.821) -- 0:03:53
664000 -- (-820.929) (-815.741) (-808.857) [-802.987] * (-821.371) [-811.144] (-821.112) (-835.037) -- 0:03:52
665000 -- (-818.810) (-824.053) [-804.696] (-821.149) * (-829.291) [-804.077] (-836.489) (-831.243) -- 0:03:51
Average standard deviation of split frequencies: 0.009887
666000 -- (-835.265) (-824.710) [-804.738] (-815.479) * [-815.201] (-832.823) (-824.301) (-832.929) -- 0:03:51
667000 -- (-835.685) (-826.770) (-809.642) [-815.709] * [-819.650] (-820.202) (-816.063) (-832.742) -- 0:03:50
668000 -- (-831.943) (-840.951) (-808.725) [-805.232] * (-841.094) [-807.728] (-815.506) (-817.120) -- 0:03:50
669000 -- (-830.526) (-830.248) [-802.696] (-805.718) * (-847.530) [-805.318] (-830.564) (-821.450) -- 0:03:49
670000 -- (-816.652) [-811.512] (-816.036) (-819.804) * (-834.372) (-838.405) [-817.733] (-820.597) -- 0:03:48
Average standard deviation of split frequencies: 0.009950
671000 -- (-805.404) (-822.758) [-811.816] (-817.190) * (-824.183) (-822.261) [-813.409] (-814.522) -- 0:03:47
672000 -- [-796.003] (-849.979) (-800.692) (-815.527) * (-807.306) (-825.002) (-826.720) [-809.477] -- 0:03:46
673000 -- [-815.086] (-827.385) (-801.616) (-841.241) * (-813.478) (-812.321) (-833.266) [-811.025] -- 0:03:46
674000 -- (-821.103) [-799.089] (-817.926) (-854.984) * (-832.749) [-805.554] (-854.998) (-821.887) -- 0:03:45
675000 -- (-826.009) [-807.991] (-810.515) (-828.786) * (-831.309) (-825.724) (-846.579) [-821.639] -- 0:03:44
Average standard deviation of split frequencies: 0.009894
676000 -- (-813.658) [-812.496] (-813.821) (-827.638) * [-812.300] (-827.528) (-841.515) (-816.404) -- 0:03:44
677000 -- [-808.955] (-824.240) (-816.748) (-828.129) * (-814.797) (-834.748) [-810.865] (-830.521) -- 0:03:43
678000 -- [-814.978] (-842.162) (-837.800) (-818.218) * (-814.721) (-822.527) (-827.040) [-820.308] -- 0:03:42
679000 -- [-806.543] (-831.450) (-834.821) (-825.412) * [-800.682] (-836.717) (-823.766) (-820.324) -- 0:03:42
680000 -- [-817.147] (-819.402) (-834.949) (-822.395) * (-816.785) (-831.552) [-822.224] (-821.542) -- 0:03:41
Average standard deviation of split frequencies: 0.009371
681000 -- [-802.658] (-840.439) (-826.429) (-818.479) * (-823.474) (-833.032) [-813.904] (-818.311) -- 0:03:40
682000 -- [-817.700] (-839.376) (-823.700) (-817.154) * (-816.451) [-817.484] (-819.303) (-813.616) -- 0:03:40
683000 -- [-811.181] (-851.160) (-831.815) (-841.725) * (-818.863) (-832.980) [-812.803] (-819.314) -- 0:03:39
684000 -- [-807.333] (-846.848) (-817.867) (-822.503) * (-824.609) (-840.990) (-819.194) [-803.231] -- 0:03:38
685000 -- [-799.218] (-858.476) (-828.793) (-823.738) * (-803.919) [-823.295] (-820.899) (-833.268) -- 0:03:37
Average standard deviation of split frequencies: 0.009363
686000 -- [-810.367] (-846.049) (-823.937) (-815.359) * (-827.762) (-836.603) [-817.599] (-821.205) -- 0:03:37
687000 -- [-818.802] (-808.570) (-838.685) (-826.190) * (-830.033) [-814.901] (-831.281) (-810.852) -- 0:03:36
688000 -- (-820.598) [-815.774] (-818.977) (-824.800) * (-839.759) [-816.843] (-823.127) (-821.108) -- 0:03:35
689000 -- (-837.903) (-818.742) [-815.694] (-816.193) * (-827.970) (-804.533) (-822.425) [-808.415] -- 0:03:35
690000 -- (-827.072) (-806.941) [-823.647] (-829.097) * (-821.477) (-839.454) [-821.926] (-815.536) -- 0:03:34
Average standard deviation of split frequencies: 0.009129
691000 -- [-817.522] (-833.567) (-814.423) (-827.296) * (-829.306) (-838.227) [-817.594] (-810.771) -- 0:03:33
692000 -- (-816.095) (-842.246) [-808.655] (-822.032) * (-837.522) (-818.762) (-814.927) [-821.786] -- 0:03:33
693000 -- [-812.223] (-826.679) (-829.000) (-817.104) * (-836.756) [-809.528] (-804.891) (-835.380) -- 0:03:32
694000 -- (-816.188) (-838.679) (-832.203) [-813.937] * [-811.113] (-819.944) (-810.809) (-836.749) -- 0:03:31
695000 -- (-807.377) (-815.291) (-830.471) [-808.060] * (-819.346) (-809.753) [-821.098] (-846.337) -- 0:03:31
Average standard deviation of split frequencies: 0.008868
696000 -- (-807.367) (-806.736) [-806.792] (-811.065) * (-806.701) [-807.109] (-821.407) (-827.110) -- 0:03:30
697000 -- (-823.428) (-802.753) (-842.707) [-810.565] * [-815.556] (-828.402) (-820.283) (-830.174) -- 0:03:29
698000 -- (-820.798) (-820.536) (-815.274) [-833.722] * [-805.631] (-824.721) (-810.372) (-825.654) -- 0:03:28
699000 -- [-801.850] (-821.765) (-833.171) (-824.740) * (-825.407) (-813.610) [-799.669] (-824.185) -- 0:03:28
700000 -- (-820.657) [-812.658] (-822.590) (-812.697) * (-812.379) (-837.646) [-828.213] (-825.868) -- 0:03:27
Average standard deviation of split frequencies: 0.009335
701000 -- (-814.190) [-807.035] (-839.407) (-822.417) * (-804.142) (-825.137) [-818.340] (-839.463) -- 0:03:26
702000 -- (-833.576) [-805.041] (-845.344) (-814.819) * (-823.820) (-831.176) [-811.469] (-819.918) -- 0:03:26
703000 -- (-835.559) (-815.752) (-846.074) [-816.687] * (-827.252) (-811.335) [-809.161] (-827.178) -- 0:03:25
704000 -- [-809.099] (-826.163) (-832.080) (-828.491) * [-821.638] (-816.427) (-818.332) (-837.680) -- 0:03:24
705000 -- (-836.315) (-823.916) [-815.505] (-827.250) * [-812.373] (-801.782) (-818.547) (-837.899) -- 0:03:24
Average standard deviation of split frequencies: 0.009431
706000 -- (-814.127) (-825.973) [-817.698] (-824.752) * (-825.022) [-803.609] (-817.102) (-822.855) -- 0:03:23
707000 -- (-809.282) (-832.328) (-827.605) [-809.521] * (-824.934) [-810.878] (-806.086) (-821.470) -- 0:03:22
708000 -- [-803.570] (-831.580) (-829.227) (-808.401) * (-813.609) (-814.966) (-816.450) [-806.455] -- 0:03:22
709000 -- [-807.980] (-824.079) (-833.736) (-825.137) * [-807.696] (-822.044) (-813.122) (-806.533) -- 0:03:21
710000 -- (-807.148) (-824.365) (-831.405) [-812.685] * (-818.973) (-832.406) (-811.261) [-815.644] -- 0:03:20
Average standard deviation of split frequencies: 0.009245
711000 -- (-824.855) (-824.608) [-816.106] (-809.893) * (-809.666) (-839.399) (-809.040) [-815.185] -- 0:03:19
712000 -- (-829.779) (-817.367) [-805.443] (-832.308) * [-808.847] (-832.280) (-815.384) (-812.465) -- 0:03:19
713000 -- (-819.292) (-844.004) [-816.080] (-829.340) * (-819.867) (-820.273) [-819.716] (-806.910) -- 0:03:18
714000 -- (-815.355) (-871.386) (-812.943) [-812.642] * (-816.429) (-844.965) [-814.834] (-815.039) -- 0:03:17
715000 -- [-804.808] (-844.110) (-825.392) (-804.783) * (-827.941) (-836.916) [-816.834] (-828.754) -- 0:03:17
Average standard deviation of split frequencies: 0.009629
716000 -- (-812.654) (-832.944) (-824.316) [-810.426] * (-826.515) [-798.509] (-817.117) (-813.322) -- 0:03:16
717000 -- (-840.055) [-806.779] (-836.806) (-818.177) * (-817.950) (-808.290) (-855.781) [-803.393] -- 0:03:15
718000 -- (-832.692) (-821.756) (-836.476) [-822.262] * [-821.686] (-811.221) (-829.946) (-825.516) -- 0:03:15
719000 -- (-827.493) [-814.957] (-821.538) (-820.004) * (-811.835) (-832.178) (-816.357) [-810.262] -- 0:03:14
720000 -- (-836.329) [-806.112] (-816.713) (-821.567) * [-815.636] (-824.012) (-818.297) (-814.114) -- 0:03:13
Average standard deviation of split frequencies: 0.009669
721000 -- [-844.764] (-810.019) (-818.711) (-830.048) * (-835.284) [-813.526] (-829.161) (-813.231) -- 0:03:13
722000 -- (-825.157) [-810.718] (-823.731) (-823.810) * (-823.968) (-817.574) (-820.437) [-823.990] -- 0:03:12
723000 -- (-835.332) [-819.024] (-820.898) (-825.619) * [-815.215] (-816.998) (-829.400) (-811.997) -- 0:03:11
724000 -- (-822.205) [-808.830] (-808.447) (-828.538) * (-806.743) (-804.262) (-830.854) [-806.534] -- 0:03:10
725000 -- (-809.309) (-818.887) [-805.146] (-816.125) * (-809.376) [-806.932] (-818.577) (-818.185) -- 0:03:10
Average standard deviation of split frequencies: 0.009760
726000 -- (-816.566) (-831.079) (-821.690) [-803.431] * (-826.342) [-825.502] (-825.731) (-818.178) -- 0:03:09
727000 -- (-818.342) (-810.783) (-822.158) [-805.426] * (-832.969) (-836.871) (-820.258) [-798.379] -- 0:03:08
728000 -- (-818.825) (-812.383) [-806.280] (-824.117) * (-833.350) (-830.074) (-817.999) [-810.513] -- 0:03:08
729000 -- [-812.248] (-803.915) (-807.807) (-837.230) * (-826.241) (-825.649) [-807.512] (-815.573) -- 0:03:07
730000 -- (-815.421) [-811.136] (-832.347) (-844.357) * (-846.231) (-826.605) [-825.917] (-821.077) -- 0:03:06
Average standard deviation of split frequencies: 0.009799
731000 -- [-811.301] (-810.102) (-836.161) (-835.313) * (-835.913) [-814.517] (-826.952) (-809.911) -- 0:03:06
732000 -- (-821.899) (-820.159) (-836.233) [-818.847] * (-841.230) (-805.954) (-823.372) [-806.322] -- 0:03:05
733000 -- [-821.826] (-833.962) (-844.332) (-814.803) * (-832.672) [-813.336] (-816.831) (-828.697) -- 0:03:05
734000 -- [-806.248] (-827.348) (-823.840) (-840.424) * (-822.136) (-805.617) [-810.364] (-821.416) -- 0:03:04
735000 -- [-804.420] (-823.899) (-824.699) (-812.894) * (-833.012) [-813.756] (-826.156) (-821.882) -- 0:03:03
Average standard deviation of split frequencies: 0.009527
736000 -- (-815.391) (-813.056) (-830.461) [-807.013] * (-831.991) (-810.585) (-843.309) [-808.260] -- 0:03:02
737000 -- (-825.216) (-834.932) [-817.440] (-821.517) * (-824.304) (-837.781) (-820.072) [-817.571] -- 0:03:01
738000 -- (-824.777) (-830.375) (-817.398) [-806.075] * (-840.288) (-838.147) [-814.306] (-802.918) -- 0:03:01
739000 -- (-817.656) [-811.863] (-849.194) (-812.576) * (-814.459) (-832.553) (-824.062) [-804.081] -- 0:03:00
740000 -- (-806.076) (-819.321) [-834.657] (-820.816) * (-818.897) (-832.091) [-813.695] (-816.558) -- 0:02:59
Average standard deviation of split frequencies: 0.009308
741000 -- (-810.507) (-810.886) [-816.568] (-817.567) * (-816.663) (-820.973) (-829.543) [-803.663] -- 0:02:59
742000 -- (-831.549) [-804.952] (-831.229) (-815.728) * (-827.815) (-823.650) (-823.012) [-811.225] -- 0:02:58
743000 -- (-835.984) (-806.874) (-818.125) [-800.827] * (-830.399) [-813.997] (-844.312) (-809.711) -- 0:02:57
744000 -- (-849.960) (-811.058) (-824.835) [-819.080] * (-843.547) (-829.165) (-815.389) [-811.926] -- 0:02:57
745000 -- (-822.990) (-834.851) [-820.822] (-819.526) * (-827.413) (-812.736) (-819.782) [-808.798] -- 0:02:56
Average standard deviation of split frequencies: 0.009400
746000 -- (-821.523) (-835.973) [-822.785] (-806.033) * (-845.164) [-814.093] (-846.190) (-805.287) -- 0:02:56
747000 -- (-833.124) (-824.331) (-823.063) [-807.509] * (-817.950) (-819.058) (-830.112) [-805.809] -- 0:02:55
748000 -- (-834.249) [-814.120] (-820.374) (-826.809) * (-835.153) [-822.361] (-810.061) (-823.619) -- 0:02:54
749000 -- (-835.754) (-840.539) [-811.140] (-824.692) * (-834.243) (-815.793) [-811.037] (-812.185) -- 0:02:53
750000 -- [-819.423] (-848.628) (-817.372) (-821.365) * (-841.860) [-808.680] (-827.507) (-837.298) -- 0:02:53
Average standard deviation of split frequencies: 0.009125
751000 -- [-819.899] (-834.803) (-825.302) (-823.828) * (-844.386) (-812.926) (-827.401) [-811.880] -- 0:02:52
752000 -- (-813.490) (-818.717) (-821.746) [-813.060] * (-834.409) [-805.215] (-825.606) (-816.020) -- 0:02:51
753000 -- (-831.852) [-805.313] (-811.295) (-817.693) * (-823.962) [-814.483] (-817.972) (-806.137) -- 0:02:50
754000 -- (-838.659) (-820.446) (-809.704) [-822.172] * (-845.573) (-829.668) (-826.402) [-813.351] -- 0:02:50
755000 -- (-826.613) [-815.336] (-821.145) (-838.826) * (-829.336) (-814.564) (-825.997) [-812.857] -- 0:02:49
Average standard deviation of split frequencies: 0.009295
756000 -- (-827.453) [-809.441] (-815.556) (-828.732) * (-834.705) [-814.476] (-811.631) (-821.085) -- 0:02:49
757000 -- (-828.820) [-812.793] (-817.873) (-823.711) * [-816.938] (-830.658) (-824.682) (-826.924) -- 0:02:48
758000 -- (-822.190) [-817.301] (-824.186) (-831.444) * (-812.578) (-843.115) (-825.872) [-819.668] -- 0:02:47
759000 -- [-805.703] (-838.742) (-816.216) (-825.066) * [-810.834] (-835.184) (-828.853) (-820.664) -- 0:02:47
760000 -- (-810.419) (-832.225) (-817.089) [-811.395] * [-810.414] (-844.008) (-832.939) (-802.636) -- 0:02:46
Average standard deviation of split frequencies: 0.009296
761000 -- (-807.765) [-823.873] (-818.216) (-807.229) * (-813.159) [-818.873] (-844.428) (-816.187) -- 0:02:45
762000 -- (-827.288) (-815.287) [-817.058] (-819.688) * (-828.770) [-805.396] (-847.953) (-813.746) -- 0:02:44
763000 -- (-826.799) [-818.011] (-822.255) (-831.539) * (-828.660) [-817.157] (-825.461) (-834.501) -- 0:02:44
764000 -- [-799.664] (-824.120) (-823.333) (-818.339) * (-823.162) (-813.426) [-814.148] (-832.580) -- 0:02:43
765000 -- [-809.160] (-828.378) (-828.137) (-820.971) * [-816.110] (-810.251) (-821.997) (-852.427) -- 0:02:42
Average standard deviation of split frequencies: 0.009308
766000 -- (-824.455) (-837.966) (-825.269) [-806.031] * (-815.231) [-825.601] (-830.495) (-838.589) -- 0:02:41
767000 -- [-809.916] (-844.863) (-813.953) (-822.675) * (-809.986) [-807.092] (-836.734) (-819.728) -- 0:02:41
768000 -- (-796.147) (-834.440) (-821.886) [-818.374] * [-822.049] (-811.482) (-825.540) (-829.550) -- 0:02:40
769000 -- [-799.722] (-837.038) (-844.776) (-823.564) * (-811.642) (-816.138) [-812.588] (-803.257) -- 0:02:39
770000 -- [-798.768] (-811.744) (-860.134) (-824.857) * (-816.225) (-816.523) [-810.976] (-811.953) -- 0:02:39
Average standard deviation of split frequencies: 0.009749
771000 -- (-822.512) [-824.587] (-836.762) (-841.633) * (-818.625) (-816.020) [-807.788] (-808.063) -- 0:02:38
772000 -- (-823.802) [-807.488] (-804.959) (-831.563) * (-829.590) (-814.943) (-831.826) [-803.727] -- 0:02:38
773000 -- (-838.985) (-822.946) [-806.787] (-815.505) * (-825.108) (-825.880) (-821.389) [-822.377] -- 0:02:37
774000 -- (-802.918) (-827.541) [-797.998] (-814.252) * [-811.602] (-851.652) (-821.969) (-819.569) -- 0:02:36
775000 -- (-836.112) [-812.058] (-816.476) (-829.045) * (-836.192) (-829.661) (-828.112) [-830.645] -- 0:02:35
Average standard deviation of split frequencies: 0.009796
776000 -- (-839.991) (-823.830) [-813.449] (-828.693) * (-816.987) (-816.389) (-828.300) [-824.288] -- 0:02:35
777000 -- (-816.466) (-830.248) (-823.211) [-803.994] * [-809.723] (-813.911) (-834.088) (-826.756) -- 0:02:34
778000 -- (-829.591) (-830.407) [-807.720] (-813.496) * [-822.519] (-815.843) (-837.357) (-821.055) -- 0:02:33
779000 -- (-823.984) (-819.922) (-819.954) [-815.920] * (-811.889) (-809.145) [-822.319] (-818.985) -- 0:02:32
780000 -- (-823.242) [-816.854] (-816.285) (-835.315) * [-818.970] (-828.122) (-817.478) (-815.706) -- 0:02:32
Average standard deviation of split frequencies: 0.009907
781000 -- (-847.019) (-818.439) [-798.563] (-816.885) * [-801.905] (-848.099) (-815.222) (-811.821) -- 0:02:31
782000 -- (-817.350) (-834.900) (-812.758) [-814.100] * (-804.035) (-816.167) (-832.658) [-806.533] -- 0:02:31
783000 -- (-823.864) (-822.250) (-833.792) [-810.839] * (-839.920) (-835.228) [-802.506] (-818.006) -- 0:02:30
784000 -- (-823.885) (-821.661) (-820.474) [-811.217] * (-829.633) (-838.645) (-811.642) [-816.792] -- 0:02:29
785000 -- (-815.120) (-812.124) [-800.182] (-810.042) * (-814.242) [-809.676] (-817.165) (-838.184) -- 0:02:28
Average standard deviation of split frequencies: 0.009990
786000 -- [-808.716] (-811.161) (-823.187) (-823.748) * [-810.811] (-822.284) (-806.007) (-833.570) -- 0:02:28
787000 -- [-808.402] (-815.956) (-816.689) (-817.928) * (-824.269) (-828.826) [-811.955] (-823.972) -- 0:02:27
788000 -- (-819.342) (-818.075) (-848.686) [-817.245] * (-830.956) (-825.106) [-804.821] (-844.598) -- 0:02:26
789000 -- (-831.149) [-835.214] (-838.664) (-840.929) * (-817.898) (-843.236) [-803.063] (-824.567) -- 0:02:26
790000 -- (-822.921) (-815.762) [-809.416] (-829.666) * (-825.529) (-816.148) [-815.562] (-850.454) -- 0:02:25
Average standard deviation of split frequencies: 0.009800
791000 -- (-832.563) (-813.400) (-826.327) [-808.380] * (-830.345) [-811.531] (-835.276) (-803.793) -- 0:02:24
792000 -- (-831.687) [-809.003] (-824.011) (-809.422) * (-818.751) (-830.798) (-815.808) [-817.915] -- 0:02:23
793000 -- (-827.767) (-817.519) [-819.058] (-813.771) * (-812.491) (-809.857) [-810.819] (-832.139) -- 0:02:23
794000 -- (-819.045) [-810.087] (-825.729) (-826.751) * (-819.350) [-812.312] (-819.524) (-822.957) -- 0:02:22
795000 -- [-812.574] (-808.796) (-834.744) (-812.529) * [-812.603] (-815.506) (-822.637) (-831.414) -- 0:02:21
Average standard deviation of split frequencies: 0.009883
796000 -- [-801.642] (-803.952) (-820.492) (-824.648) * [-798.952] (-820.899) (-828.564) (-829.274) -- 0:02:21
797000 -- (-825.463) (-810.940) (-837.729) [-803.722] * (-811.490) [-822.041] (-831.068) (-846.727) -- 0:02:20
798000 -- (-822.289) [-812.118] (-828.769) (-812.038) * [-814.876] (-821.961) (-819.879) (-834.664) -- 0:02:19
799000 -- (-841.922) (-830.493) (-850.060) [-808.491] * [-806.878] (-824.988) (-812.938) (-825.436) -- 0:02:19
800000 -- (-835.848) (-828.563) (-841.781) [-804.950] * (-835.057) (-825.364) [-830.009] (-817.721) -- 0:02:18
Average standard deviation of split frequencies: 0.009991
801000 -- (-837.961) (-820.536) (-833.000) [-809.308] * (-801.670) (-839.973) (-810.589) [-810.618] -- 0:02:17
802000 -- (-832.932) (-821.043) (-812.409) [-813.255] * [-818.201] (-836.748) (-810.933) (-832.007) -- 0:02:17
803000 -- (-827.847) [-818.811] (-825.529) (-824.502) * [-816.356] (-834.054) (-816.430) (-827.582) -- 0:02:16
804000 -- (-842.888) (-841.124) [-810.901] (-806.818) * [-800.513] (-815.170) (-833.511) (-839.033) -- 0:02:15
805000 -- (-817.730) (-809.670) (-815.887) [-816.362] * (-796.884) (-817.765) [-815.412] (-829.075) -- 0:02:14
Average standard deviation of split frequencies: 0.009632
806000 -- (-824.880) [-818.601] (-819.017) (-803.931) * (-809.301) (-831.152) [-809.127] (-810.153) -- 0:02:14
807000 -- (-823.352) [-817.166] (-817.527) (-815.269) * (-814.784) [-811.937] (-819.722) (-814.480) -- 0:02:13
808000 -- (-816.868) (-815.718) [-816.500] (-829.433) * (-826.396) [-819.917] (-835.710) (-820.227) -- 0:02:12
809000 -- (-829.641) (-825.106) [-797.896] (-843.128) * (-822.967) (-827.413) [-824.380] (-822.604) -- 0:02:12
810000 -- [-816.139] (-821.742) (-817.462) (-840.424) * [-811.185] (-811.515) (-825.359) (-823.510) -- 0:02:11
Average standard deviation of split frequencies: 0.009740
811000 -- (-813.950) (-830.108) [-824.147] (-838.988) * [-835.117] (-822.719) (-843.677) (-818.917) -- 0:02:10
812000 -- (-812.807) [-808.660] (-842.059) (-825.341) * (-834.232) [-813.558] (-839.332) (-816.477) -- 0:02:10
813000 -- (-822.325) [-798.956] (-827.262) (-815.824) * (-816.136) [-807.103] (-833.715) (-832.140) -- 0:02:09
814000 -- (-831.649) (-818.777) [-824.170] (-812.373) * (-820.179) [-817.380] (-843.208) (-845.859) -- 0:02:08
815000 -- (-830.976) (-818.702) (-814.012) [-813.497] * (-809.644) [-819.372] (-822.245) (-831.368) -- 0:02:08
Average standard deviation of split frequencies: 0.009550
816000 -- (-832.107) (-798.574) (-814.826) [-819.126] * (-812.365) (-816.861) [-811.652] (-825.546) -- 0:02:07
817000 -- (-826.436) (-816.482) [-808.979] (-827.471) * (-814.740) (-828.005) [-815.701] (-817.813) -- 0:02:06
818000 -- (-814.024) [-802.615] (-815.923) (-826.664) * (-820.517) (-822.361) [-810.274] (-809.823) -- 0:02:05
819000 -- (-818.810) [-817.811] (-823.449) (-826.627) * (-814.484) (-815.135) (-826.916) [-814.171] -- 0:02:05
820000 -- (-828.228) (-807.083) [-814.457] (-833.963) * (-825.362) [-810.086] (-808.827) (-824.514) -- 0:02:04
Average standard deviation of split frequencies: 0.009460
821000 -- (-803.348) [-817.001] (-822.308) (-845.767) * (-821.153) (-828.262) [-818.943] (-817.328) -- 0:02:03
822000 -- [-801.112] (-823.171) (-825.502) (-823.208) * (-819.393) (-818.792) [-813.193] (-820.068) -- 0:02:03
823000 -- [-810.277] (-809.271) (-822.014) (-848.903) * (-825.155) (-833.088) [-829.052] (-806.526) -- 0:02:02
824000 -- (-817.286) (-810.826) (-835.030) [-818.047] * [-813.958] (-835.059) (-827.389) (-800.440) -- 0:02:01
825000 -- (-824.149) (-818.003) [-823.512] (-823.748) * [-803.304] (-823.814) (-811.996) (-807.179) -- 0:02:01
Average standard deviation of split frequencies: 0.009809
826000 -- (-825.159) (-822.763) (-810.556) [-805.511] * [-812.277] (-831.206) (-820.594) (-805.071) -- 0:02:00
827000 -- [-808.135] (-815.421) (-804.393) (-814.929) * [-806.878] (-834.056) (-839.322) (-812.703) -- 0:01:59
828000 -- (-817.306) [-806.427] (-830.003) (-810.450) * [-812.004] (-842.792) (-824.725) (-812.801) -- 0:01:59
829000 -- (-818.608) [-810.493] (-818.839) (-827.149) * (-811.411) (-834.203) [-813.455] (-805.787) -- 0:01:58
830000 -- (-825.916) (-813.148) (-816.979) [-821.948] * (-837.289) (-822.446) (-802.048) [-802.810] -- 0:01:57
Average standard deviation of split frequencies: 0.009594
831000 -- (-819.830) (-824.513) [-815.224] (-815.146) * (-824.483) (-815.251) (-814.336) [-800.392] -- 0:01:56
832000 -- (-828.793) (-817.612) (-833.663) [-822.720] * (-819.252) (-848.528) (-824.034) [-803.119] -- 0:01:56
833000 -- (-827.439) (-807.421) (-823.096) [-810.822] * [-829.138] (-836.795) (-823.626) (-829.822) -- 0:01:55
834000 -- (-832.318) [-826.612] (-824.379) (-825.996) * (-810.818) [-816.611] (-814.215) (-816.097) -- 0:01:54
835000 -- (-814.633) (-823.400) [-807.989] (-810.610) * (-811.443) (-825.586) [-814.058] (-825.854) -- 0:01:54
Average standard deviation of split frequencies: 0.009339
836000 -- (-828.604) [-823.257] (-821.989) (-816.315) * (-820.349) (-843.760) [-817.378] (-828.614) -- 0:01:53
837000 -- [-819.514] (-820.149) (-827.246) (-828.718) * (-809.754) (-818.067) [-816.681] (-815.944) -- 0:01:52
838000 -- [-826.134] (-813.484) (-818.316) (-821.383) * (-812.213) [-813.415] (-817.310) (-812.298) -- 0:01:52
839000 -- (-841.820) (-818.394) (-825.480) [-823.962] * (-827.187) (-832.177) (-820.999) [-805.477] -- 0:01:51
840000 -- (-834.985) (-816.231) [-818.162] (-813.814) * (-811.282) (-834.424) (-829.517) [-810.590] -- 0:01:50
Average standard deviation of split frequencies: 0.008744
841000 -- (-834.191) (-815.036) [-807.431] (-827.891) * (-809.079) (-831.494) (-832.944) [-808.517] -- 0:01:50
842000 -- (-825.021) [-802.446] (-809.412) (-827.599) * [-819.875] (-822.171) (-810.518) (-813.568) -- 0:01:49
843000 -- (-837.615) (-827.028) [-805.842] (-816.623) * (-836.264) [-809.422] (-822.013) (-814.268) -- 0:01:48
844000 -- (-820.909) (-839.685) (-807.119) [-807.125] * (-838.230) (-821.470) (-829.623) [-804.250] -- 0:01:48
845000 -- (-812.948) (-814.490) [-817.520] (-842.459) * (-832.181) (-823.499) [-817.307] (-807.426) -- 0:01:47
Average standard deviation of split frequencies: 0.008724
846000 -- (-811.599) (-844.283) (-825.921) [-810.421] * (-807.261) [-811.443] (-852.126) (-835.206) -- 0:01:46
847000 -- (-814.644) (-826.172) [-802.162] (-826.876) * [-822.462] (-819.647) (-821.837) (-832.709) -- 0:01:46
848000 -- (-816.927) (-827.071) [-819.841] (-833.297) * [-823.475] (-838.736) (-804.432) (-813.839) -- 0:01:45
849000 -- [-809.375] (-819.590) (-822.108) (-824.217) * (-825.541) (-815.132) [-811.187] (-835.567) -- 0:01:44
850000 -- (-817.077) (-816.727) [-821.320] (-812.171) * [-804.764] (-813.231) (-833.144) (-837.461) -- 0:01:43
Average standard deviation of split frequencies: 0.008918
851000 -- (-832.131) (-830.598) (-823.877) [-814.282] * (-817.897) [-818.499] (-822.811) (-831.491) -- 0:01:43
852000 -- (-837.019) (-817.164) [-820.127] (-814.263) * (-822.844) (-829.910) [-798.875] (-820.463) -- 0:01:42
853000 -- [-819.473] (-835.635) (-811.453) (-816.234) * (-820.095) (-825.172) [-811.343] (-830.230) -- 0:01:41
854000 -- (-825.979) [-808.514] (-818.609) (-829.435) * (-822.922) (-801.566) (-822.212) [-823.914] -- 0:01:41
855000 -- (-819.367) (-821.103) [-811.595] (-828.578) * (-848.494) [-819.595] (-822.998) (-822.254) -- 0:01:40
Average standard deviation of split frequencies: 0.008742
856000 -- (-834.286) [-812.463] (-837.154) (-817.646) * (-852.930) (-814.815) [-806.408] (-818.470) -- 0:01:39
857000 -- [-817.587] (-826.560) (-814.331) (-811.398) * (-819.017) (-832.120) [-806.366] (-819.661) -- 0:01:39
858000 -- (-808.943) (-824.002) [-838.744] (-806.209) * (-828.849) (-826.678) (-834.413) [-820.200] -- 0:01:38
859000 -- [-805.952] (-818.120) (-838.205) (-834.588) * (-814.640) (-822.813) (-830.130) [-814.419] -- 0:01:37
860000 -- [-808.650] (-812.792) (-835.112) (-823.592) * (-815.542) (-829.551) (-816.842) [-813.883] -- 0:01:37
Average standard deviation of split frequencies: 0.008935
861000 -- (-816.776) [-804.470] (-848.670) (-824.002) * [-817.609] (-843.529) (-810.687) (-811.546) -- 0:01:36
862000 -- (-823.820) [-801.167] (-839.954) (-828.090) * (-827.552) (-828.949) (-826.343) [-809.993] -- 0:01:35
863000 -- [-817.553] (-807.847) (-850.508) (-823.426) * [-817.540] (-825.379) (-819.730) (-827.457) -- 0:01:34
864000 -- [-812.915] (-837.009) (-831.390) (-821.057) * (-819.027) (-834.873) (-812.111) [-810.756] -- 0:01:34
865000 -- (-830.881) (-828.527) [-815.578] (-828.059) * [-822.069] (-831.950) (-815.999) (-824.736) -- 0:01:33
Average standard deviation of split frequencies: 0.008965
866000 -- [-817.254] (-847.735) (-819.460) (-810.941) * (-805.341) (-830.010) (-808.812) [-813.363] -- 0:01:32
867000 -- (-831.883) (-832.588) [-815.217] (-808.750) * [-814.402] (-821.217) (-832.220) (-799.531) -- 0:01:32
868000 -- (-829.812) (-838.899) (-833.674) [-808.488] * (-812.546) (-811.079) (-817.407) [-824.452] -- 0:01:31
869000 -- (-829.802) (-831.403) (-830.803) [-816.350] * [-815.962] (-817.469) (-811.767) (-815.817) -- 0:01:30
870000 -- (-833.483) [-817.143] (-817.425) (-809.719) * [-802.381] (-803.863) (-836.476) (-831.498) -- 0:01:30
Average standard deviation of split frequencies: 0.008815
871000 -- (-803.824) (-831.100) (-818.191) [-815.755] * [-812.609] (-824.322) (-821.123) (-813.037) -- 0:01:29
872000 -- (-809.872) (-825.113) (-828.895) [-807.863] * (-814.984) (-825.201) [-800.931] (-834.566) -- 0:01:28
873000 -- (-817.967) (-827.101) [-803.686] (-835.315) * [-815.223] (-825.047) (-808.089) (-826.844) -- 0:01:28
874000 -- (-833.232) (-827.926) (-828.818) [-804.275] * [-811.237] (-817.023) (-848.874) (-827.040) -- 0:01:27
875000 -- (-838.374) (-837.440) [-826.479] (-812.419) * (-810.763) [-814.114] (-824.193) (-819.116) -- 0:01:26
Average standard deviation of split frequencies: 0.008795
876000 -- [-807.583] (-824.195) (-818.624) (-816.660) * (-804.735) (-822.060) [-811.714] (-804.883) -- 0:01:25
877000 -- [-804.049] (-827.081) (-810.678) (-827.514) * (-815.267) (-827.407) [-828.634] (-841.110) -- 0:01:25
878000 -- [-828.388] (-825.657) (-820.410) (-823.064) * [-807.743] (-826.832) (-831.316) (-827.986) -- 0:01:24
879000 -- (-825.307) (-822.112) (-835.237) [-801.580] * (-810.975) (-828.014) (-818.285) [-805.775] -- 0:01:23
880000 -- [-811.873] (-826.843) (-819.113) (-810.071) * (-825.043) (-822.677) (-819.466) [-807.355] -- 0:01:23
Average standard deviation of split frequencies: 0.008498
881000 -- (-817.387) (-836.893) (-819.028) [-805.792] * [-815.308] (-836.162) (-821.859) (-806.317) -- 0:01:22
882000 -- [-817.117] (-832.089) (-821.444) (-818.265) * (-828.256) (-804.057) (-821.219) [-801.267] -- 0:01:21
883000 -- [-813.174] (-837.938) (-821.373) (-810.836) * (-834.046) [-805.285] (-810.113) (-813.358) -- 0:01:21
884000 -- (-835.807) (-832.275) (-823.696) [-806.920] * (-815.137) [-813.289] (-822.356) (-818.224) -- 0:01:20
885000 -- (-823.503) (-823.092) (-820.699) [-808.524] * (-828.159) (-824.344) (-820.204) [-816.454] -- 0:01:19
Average standard deviation of split frequencies: 0.008014
886000 -- (-828.693) (-811.652) (-819.462) [-811.815] * (-847.749) (-810.537) [-810.151] (-829.428) -- 0:01:19
887000 -- [-829.134] (-822.436) (-838.222) (-824.906) * (-830.655) (-829.023) (-810.536) [-821.300] -- 0:01:18
888000 -- (-840.614) (-838.783) (-816.794) [-798.338] * (-806.110) (-818.665) (-813.382) [-814.284] -- 0:01:17
889000 -- (-830.552) (-830.728) (-813.953) [-805.988] * (-806.537) [-820.045] (-802.871) (-802.712) -- 0:01:16
890000 -- (-817.321) (-812.440) (-831.997) [-820.880] * [-807.041] (-826.105) (-834.268) (-823.483) -- 0:01:16
Average standard deviation of split frequencies: 0.008154
891000 -- [-809.924] (-819.440) (-830.049) (-820.288) * [-809.308] (-816.246) (-835.604) (-816.532) -- 0:01:15
892000 -- (-816.079) (-819.403) (-840.858) [-822.299] * (-819.266) (-820.836) [-806.292] (-832.632) -- 0:01:14
893000 -- (-836.259) [-817.225] (-837.252) (-805.873) * [-807.355] (-797.742) (-822.818) (-829.689) -- 0:01:14
894000 -- [-817.146] (-818.228) (-843.730) (-804.870) * (-826.059) [-803.238] (-822.313) (-823.084) -- 0:01:13
895000 -- (-840.448) [-812.607] (-836.865) (-834.313) * (-826.152) [-824.294] (-823.437) (-825.212) -- 0:01:12
Average standard deviation of split frequencies: 0.007958
896000 -- (-840.551) [-817.683] (-844.374) (-812.182) * [-811.326] (-835.491) (-808.721) (-846.916) -- 0:01:12
897000 -- (-811.793) (-812.602) (-846.046) [-806.505] * (-816.971) (-800.249) (-815.649) [-812.943] -- 0:01:11
898000 -- (-824.188) (-833.757) (-835.038) [-804.373] * (-823.067) (-812.760) (-812.082) [-806.841] -- 0:01:10
899000 -- (-814.952) [-820.412] (-837.900) (-808.248) * (-812.711) (-824.079) [-812.618] (-818.286) -- 0:01:09
900000 -- (-828.744) (-826.686) (-815.560) [-802.504] * (-801.981) (-816.483) [-817.087] (-803.321) -- 0:01:09
Average standard deviation of split frequencies: 0.008358
901000 -- (-854.892) (-820.631) (-811.400) [-804.690] * (-828.116) (-817.454) (-827.911) [-813.633] -- 0:01:08
902000 -- (-834.603) (-820.457) [-811.104] (-819.819) * (-827.492) (-832.444) (-828.833) [-810.946] -- 0:01:07
903000 -- (-821.635) (-828.680) [-818.695] (-835.169) * (-825.794) (-829.887) (-817.343) [-806.906] -- 0:01:07
904000 -- (-827.582) [-809.331] (-808.459) (-820.362) * (-821.759) (-843.466) (-830.952) [-815.553] -- 0:01:06
905000 -- [-801.672] (-826.013) (-817.562) (-823.749) * (-819.074) [-825.133] (-835.402) (-831.678) -- 0:01:05
Average standard deviation of split frequencies: 0.008423
906000 -- [-807.401] (-831.222) (-834.724) (-812.658) * (-819.688) [-832.013] (-813.507) (-829.281) -- 0:01:05
907000 -- [-816.344] (-827.094) (-838.923) (-808.045) * (-810.493) (-817.600) [-806.174] (-815.775) -- 0:01:04
908000 -- (-822.261) (-831.834) (-833.210) [-807.862] * [-819.751] (-821.393) (-816.367) (-820.331) -- 0:01:03
909000 -- (-816.433) (-836.262) (-841.268) [-802.697] * [-807.112] (-819.271) (-828.240) (-823.049) -- 0:01:03
910000 -- [-818.856] (-837.915) (-830.080) (-819.330) * [-816.718] (-811.273) (-812.610) (-841.928) -- 0:01:02
Average standard deviation of split frequencies: 0.008574
911000 -- (-812.146) (-828.707) (-826.169) [-825.521] * (-825.994) (-824.117) [-815.650] (-818.934) -- 0:01:01
912000 -- (-824.580) [-812.991] (-810.907) (-826.269) * (-816.744) (-816.036) [-804.208] (-827.465) -- 0:01:00
913000 -- (-840.634) (-815.010) [-812.111] (-819.695) * [-819.539] (-830.583) (-805.287) (-827.368) -- 0:01:00
914000 -- (-827.724) [-819.586] (-821.270) (-833.912) * [-806.310] (-814.657) (-812.337) (-829.808) -- 0:00:59
915000 -- [-820.105] (-832.086) (-813.979) (-813.724) * (-825.661) [-814.819] (-823.859) (-816.982) -- 0:00:58
Average standard deviation of split frequencies: 0.008379
916000 -- (-857.197) [-808.315] (-803.833) (-809.818) * (-822.909) (-817.631) (-827.053) [-821.577] -- 0:00:58
917000 -- [-815.441] (-818.423) (-827.841) (-817.262) * (-836.633) [-831.121] (-839.199) (-818.806) -- 0:00:57
918000 -- (-813.719) (-856.062) (-821.398) [-813.605] * (-820.903) [-812.004] (-840.423) (-832.284) -- 0:00:56
919000 -- (-804.117) (-825.355) [-809.654] (-826.608) * [-807.786] (-831.859) (-833.881) (-801.403) -- 0:00:56
920000 -- (-815.043) (-822.809) [-804.587] (-811.955) * [-810.443] (-812.350) (-811.405) (-814.443) -- 0:00:55
Average standard deviation of split frequencies: 0.008464
921000 -- [-818.187] (-818.690) (-805.933) (-823.089) * (-820.005) [-817.509] (-806.843) (-819.780) -- 0:00:54
922000 -- (-820.880) [-795.863] (-817.123) (-816.760) * (-825.300) [-803.728] (-807.687) (-819.112) -- 0:00:54
923000 -- (-815.708) [-807.563] (-813.216) (-821.072) * (-827.920) (-816.332) [-812.175] (-829.710) -- 0:00:53
924000 -- (-839.534) [-821.216] (-823.112) (-832.391) * (-821.645) (-816.480) [-810.974] (-805.985) -- 0:00:52
925000 -- (-827.032) [-812.455] (-825.058) (-824.295) * [-800.519] (-832.289) (-819.172) (-825.248) -- 0:00:51
Average standard deviation of split frequencies: 0.008447
926000 -- (-830.984) (-820.331) [-823.068] (-814.150) * (-815.327) [-819.703] (-818.450) (-810.245) -- 0:00:51
927000 -- (-825.838) (-826.238) (-823.054) [-802.874] * (-823.420) [-815.605] (-830.330) (-816.660) -- 0:00:50
928000 -- (-838.803) (-810.260) (-827.673) [-800.742] * (-796.785) [-799.769] (-817.309) (-824.291) -- 0:00:49
929000 -- [-822.103] (-817.285) (-833.032) (-822.022) * [-809.190] (-813.555) (-825.840) (-831.077) -- 0:00:49
930000 -- [-811.276] (-823.356) (-828.245) (-804.127) * (-836.672) (-821.588) (-814.707) [-822.263] -- 0:00:48
Average standard deviation of split frequencies: 0.008199
931000 -- (-813.754) (-839.506) (-817.221) [-804.559] * (-825.688) (-845.937) [-809.633] (-817.527) -- 0:00:47
932000 -- (-838.351) [-823.391] (-818.673) (-811.650) * (-842.670) (-849.008) [-817.958] (-818.663) -- 0:00:47
933000 -- (-819.582) (-820.035) (-820.177) [-803.281] * (-828.861) (-848.311) (-820.395) [-810.551] -- 0:00:46
934000 -- (-852.477) (-810.616) (-828.944) [-809.312] * (-817.006) (-827.025) [-805.260] (-800.339) -- 0:00:45
935000 -- (-827.536) (-826.252) (-835.257) [-809.382] * (-811.253) (-848.128) [-805.919] (-827.461) -- 0:00:45
Average standard deviation of split frequencies: 0.007806
936000 -- (-830.960) [-803.471] (-818.530) (-813.673) * (-818.771) (-828.613) [-815.724] (-812.525) -- 0:00:44
937000 -- [-809.501] (-806.313) (-822.624) (-808.191) * [-814.012] (-822.903) (-815.311) (-830.466) -- 0:00:43
938000 -- (-838.442) (-802.717) (-834.874) [-813.091] * (-815.426) [-801.443] (-831.327) (-832.971) -- 0:00:42
939000 -- (-844.239) [-813.868] (-811.044) (-823.932) * (-831.556) (-814.389) [-820.141] (-815.449) -- 0:00:42
940000 -- (-850.437) (-822.463) [-811.585] (-822.768) * [-818.766] (-817.773) (-831.046) (-806.171) -- 0:00:41
Average standard deviation of split frequencies: 0.007768
941000 -- (-822.993) [-815.057] (-820.506) (-821.741) * (-840.614) (-823.514) (-827.128) [-804.331] -- 0:00:40
942000 -- (-837.487) (-809.081) [-811.092] (-830.501) * (-828.055) (-835.273) (-844.195) [-806.935] -- 0:00:40
943000 -- (-840.233) (-818.146) (-816.018) [-820.439] * (-833.177) (-816.957) (-821.625) [-805.710] -- 0:00:39
944000 -- (-844.699) [-814.174] (-820.468) (-818.299) * (-821.040) (-827.592) (-820.281) [-800.140] -- 0:00:38
945000 -- (-839.361) [-810.762] (-827.326) (-821.295) * (-821.313) (-811.433) (-849.777) [-811.188] -- 0:00:38
Average standard deviation of split frequencies: 0.007911
946000 -- (-851.946) (-813.002) (-835.411) [-818.122] * (-820.484) (-827.395) (-824.043) [-810.251] -- 0:00:37
947000 -- (-826.934) [-824.684] (-827.544) (-826.440) * (-823.145) (-829.838) (-825.924) [-811.482] -- 0:00:36
948000 -- (-827.609) (-818.024) (-817.478) [-809.290] * (-842.622) (-826.477) [-824.222] (-818.812) -- 0:00:36
949000 -- [-818.446] (-824.084) (-825.591) (-801.041) * (-822.466) (-833.879) (-817.994) [-815.404] -- 0:00:35
950000 -- (-804.845) (-828.141) [-812.310] (-847.972) * (-844.513) (-827.702) [-824.503] (-810.094) -- 0:00:34
Average standard deviation of split frequencies: 0.007980
951000 -- [-813.946] (-807.276) (-813.139) (-838.300) * (-822.345) (-836.922) (-832.911) [-818.785] -- 0:00:33
952000 -- (-829.037) (-806.770) [-801.345] (-807.586) * (-822.384) (-829.070) [-821.640] (-826.551) -- 0:00:33
953000 -- (-823.380) [-810.300] (-821.786) (-835.120) * (-823.018) [-810.145] (-804.039) (-829.458) -- 0:00:32
954000 -- (-817.388) [-822.611] (-830.388) (-844.605) * [-803.912] (-812.926) (-814.691) (-828.492) -- 0:00:31
955000 -- (-813.473) [-806.591] (-841.482) (-829.255) * [-803.164] (-838.792) (-821.042) (-821.581) -- 0:00:31
Average standard deviation of split frequencies: 0.007905
956000 -- [-822.603] (-824.733) (-839.242) (-837.424) * [-804.918] (-830.092) (-829.945) (-806.870) -- 0:00:30
957000 -- (-830.028) (-810.307) (-840.534) [-815.893] * (-810.313) (-829.316) (-816.193) [-815.066] -- 0:00:29
958000 -- (-832.533) [-816.239] (-817.747) (-838.142) * (-819.218) (-823.817) (-830.955) [-803.277] -- 0:00:29
959000 -- (-833.236) [-807.837] (-832.595) (-828.139) * (-823.075) (-818.954) (-809.828) [-802.153] -- 0:00:28
960000 -- (-839.112) [-815.016] (-816.665) (-824.060) * (-811.944) (-802.016) [-801.598] (-826.414) -- 0:00:27
Average standard deviation of split frequencies: 0.007989
961000 -- (-821.037) [-812.882] (-816.211) (-817.762) * (-821.241) (-816.407) [-816.213] (-829.204) -- 0:00:27
962000 -- (-819.376) (-824.134) [-805.577] (-860.076) * [-808.573] (-823.083) (-827.273) (-820.481) -- 0:00:26
963000 -- (-820.530) [-812.196] (-811.528) (-816.759) * (-832.965) [-810.927] (-822.857) (-836.888) -- 0:00:25
964000 -- [-809.856] (-814.445) (-814.662) (-811.564) * (-837.188) [-815.326] (-813.896) (-835.281) -- 0:00:24
965000 -- (-820.245) [-807.662] (-815.498) (-814.062) * (-836.889) (-804.276) (-825.611) [-823.535] -- 0:00:24
Average standard deviation of split frequencies: 0.007930
966000 -- (-811.330) [-808.456] (-826.972) (-815.960) * (-835.463) [-809.052] (-824.000) (-813.122) -- 0:00:23
967000 -- [-807.402] (-814.919) (-819.737) (-831.745) * (-822.338) (-835.472) (-820.307) [-814.438] -- 0:00:22
968000 -- (-812.021) [-803.396] (-821.818) (-841.609) * (-831.108) (-823.166) (-830.814) [-809.889] -- 0:00:22
969000 -- [-803.238] (-809.962) (-829.117) (-826.969) * (-813.304) [-816.812] (-821.178) (-809.663) -- 0:00:21
970000 -- (-829.165) (-827.168) [-820.814] (-810.307) * (-807.796) (-809.480) (-836.026) [-813.443] -- 0:00:20
Average standard deviation of split frequencies: 0.007968
971000 -- (-817.784) (-808.024) (-822.493) [-806.327] * (-841.314) (-812.730) [-817.634] (-809.284) -- 0:00:20
972000 -- (-825.662) [-813.714] (-826.890) (-828.650) * (-819.322) (-839.816) [-821.643] (-816.781) -- 0:00:19
973000 -- (-821.964) [-821.199] (-829.092) (-817.592) * (-812.531) (-817.344) (-820.324) [-811.359] -- 0:00:18
974000 -- [-816.325] (-819.681) (-824.764) (-819.971) * (-836.275) (-814.804) (-811.988) [-814.963] -- 0:00:18
975000 -- (-814.501) [-809.585] (-836.973) (-828.524) * (-823.215) (-813.735) (-837.811) [-812.201] -- 0:00:17
Average standard deviation of split frequencies: 0.007652
976000 -- [-813.866] (-795.355) (-820.487) (-812.736) * (-815.102) [-817.333] (-830.880) (-819.986) -- 0:00:16
977000 -- [-804.982] (-815.263) (-841.208) (-808.889) * [-808.230] (-814.507) (-832.706) (-823.881) -- 0:00:15
978000 -- (-805.999) [-817.795] (-844.503) (-842.988) * (-815.041) (-810.837) [-825.338] (-816.873) -- 0:00:15
979000 -- (-821.288) (-830.868) [-826.411] (-822.383) * (-819.065) (-815.495) (-835.297) [-827.191] -- 0:00:14
980000 -- (-809.236) [-810.166] (-830.484) (-820.577) * (-810.580) (-812.917) (-849.036) [-809.025] -- 0:00:13
Average standard deviation of split frequencies: 0.007676
981000 -- (-824.081) (-810.581) [-824.098] (-807.042) * (-803.859) (-829.889) (-829.496) [-801.463] -- 0:00:13
982000 -- (-820.223) [-805.672] (-832.291) (-829.940) * (-825.788) (-817.669) (-833.594) [-807.625] -- 0:00:12
983000 -- [-801.901] (-807.482) (-841.300) (-807.404) * (-840.205) [-809.191] (-823.453) (-830.136) -- 0:00:11
984000 -- (-819.942) [-814.597] (-839.894) (-836.628) * [-814.597] (-835.266) (-824.419) (-817.111) -- 0:00:11
985000 -- (-821.213) [-806.466] (-823.018) (-831.114) * (-822.710) (-852.581) [-821.424] (-817.517) -- 0:00:10
Average standard deviation of split frequencies: 0.007754
986000 -- (-835.104) [-820.996] (-853.305) (-816.876) * (-819.621) (-810.932) [-807.705] (-818.665) -- 0:00:09
987000 -- [-805.730] (-821.734) (-839.416) (-845.585) * (-825.161) [-809.122] (-834.735) (-828.928) -- 0:00:09
988000 -- (-801.827) [-802.563] (-861.026) (-829.823) * (-812.868) (-841.380) [-817.017] (-831.277) -- 0:00:08
989000 -- [-813.943] (-802.175) (-837.342) (-824.524) * [-807.900] (-837.862) (-826.319) (-814.262) -- 0:00:07
990000 -- [-811.903] (-827.179) (-835.633) (-830.700) * [-812.580] (-823.437) (-819.618) (-816.917) -- 0:00:06
Average standard deviation of split frequencies: 0.007732
991000 -- (-820.694) [-814.215] (-845.977) (-823.791) * (-815.330) [-811.680] (-817.542) (-823.070) -- 0:00:06
992000 -- (-827.342) [-810.767] (-840.192) (-822.693) * (-828.082) (-814.244) [-810.828] (-826.039) -- 0:00:05
993000 -- (-831.979) [-820.138] (-830.823) (-834.411) * (-820.797) (-802.422) [-806.782] (-826.295) -- 0:00:04
994000 -- [-820.139] (-829.610) (-830.832) (-806.702) * (-828.539) (-825.592) [-803.618] (-827.525) -- 0:00:04
995000 -- (-812.332) (-848.353) (-807.184) [-819.143] * (-807.987) [-803.064] (-819.371) (-837.053) -- 0:00:03
Average standard deviation of split frequencies: 0.007292
996000 -- (-834.941) [-824.122] (-807.452) (-838.788) * (-811.169) [-809.866] (-819.098) (-841.957) -- 0:00:02
997000 -- (-837.365) (-834.445) [-801.252] (-829.887) * (-807.418) [-800.851] (-839.712) (-841.433) -- 0:00:02
998000 -- (-822.386) (-841.836) (-822.816) [-806.878] * (-827.436) [-812.716] (-822.798) (-825.607) -- 0:00:01
999000 -- [-815.510] (-815.459) (-841.300) (-820.517) * (-833.090) [-813.659] (-820.123) (-841.131) -- 0:00:00
1000000 -- (-828.880) (-818.113) (-834.892) [-806.334] * (-811.557) (-809.681) [-797.847] (-833.395) -- 0:00:00
Average standard deviation of split frequencies: 0.007449
Analysis completed in 11 mins 33 seconds
Analysis used 692.45 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -788.07
Likelihood of best state for "cold" chain of run 2 was -788.08
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
58.4 % ( 49 %) Dirichlet(Revmat{all})
73.1 % ( 65 %) Slider(Revmat{all})
38.6 % ( 35 %) Dirichlet(Pi{all})
37.9 % ( 34 %) Slider(Pi{all})
54.8 % ( 22 %) Multiplier(Alpha{1,2})
58.3 % ( 35 %) Multiplier(Alpha{3})
78.1 % ( 50 %) Slider(Pinvar{all})
63.2 % ( 60 %) ExtSPR(Tau{all},V{all})
53.3 % ( 49 %) ExtTBR(Tau{all},V{all})
68.3 % ( 61 %) NNI(Tau{all},V{all})
48.8 % ( 44 %) ParsSPR(Tau{all},V{all})
27.5 % ( 31 %) Multiplier(V{all})
77.4 % ( 74 %) Nodeslider(V{all})
25.7 % ( 29 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
60.3 % ( 52 %) Dirichlet(Revmat{all})
73.9 % ( 65 %) Slider(Revmat{all})
38.9 % ( 23 %) Dirichlet(Pi{all})
37.8 % ( 25 %) Slider(Pi{all})
55.0 % ( 30 %) Multiplier(Alpha{1,2})
58.5 % ( 26 %) Multiplier(Alpha{3})
78.3 % ( 55 %) Slider(Pinvar{all})
63.0 % ( 56 %) ExtSPR(Tau{all},V{all})
53.6 % ( 54 %) ExtTBR(Tau{all},V{all})
68.5 % ( 80 %) NNI(Tau{all},V{all})
48.7 % ( 43 %) ParsSPR(Tau{all},V{all})
27.5 % ( 23 %) Multiplier(V{all})
77.3 % ( 79 %) Nodeslider(V{all})
25.6 % ( 25 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.45 0.14 0.03
2 | 166520 0.47 0.16
3 | 166504 167149 0.48
4 | 166845 166633 166349
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.46 0.15 0.03
2 | 166387 0.48 0.16
3 | 166344 166590 0.48
4 | 167169 166575 166935
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -808.12
| 2 1 1 |
| 1 |
|1 2 1 1 2|
| * 12 1 2 2 1 2 2 |
| * 1 1 1 2 |
| 2 122 2 2 1 21 2 1 |
| 21 1 2 11 1 1 1 2 *1 11 1 1 1 2 |
| 1 2 1 21 * 22 12 22211 1 |
|2 2 1 2 22 1 1 1 1 |
| 1 1 1*2 1 2 2 1 * 2 1 2 |
| 2 2 22 * 22 |
| 1 2 2 1 2 1 2 1|
| 2 1 |
| 1 2 2 |
| 2 2 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -816.62
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -797.17 -839.79
2 -799.19 -834.06
--------------------------------------
TOTAL -797.74 -839.10
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.625090 0.009972 0.450834 0.826889 0.616595 1118.23 1141.12 1.000
r(A<->C){all} 0.118538 0.001743 0.042614 0.201875 0.115312 561.90 580.62 1.000
r(A<->G){all} 0.349618 0.003786 0.234982 0.477647 0.348056 442.23 492.09 1.001
r(A<->T){all} 0.082693 0.000633 0.039826 0.135408 0.079446 695.58 707.90 1.000
r(C<->G){all} 0.057952 0.001396 0.000984 0.128877 0.051685 317.78 385.54 1.001
r(C<->T){all} 0.334969 0.003871 0.223381 0.463935 0.332549 419.55 428.03 1.000
r(G<->T){all} 0.056231 0.000703 0.011966 0.110081 0.052500 625.52 646.37 1.001
pi(A){all} 0.290273 0.000699 0.237966 0.340017 0.290677 885.86 953.84 1.000
pi(C){all} 0.172348 0.000458 0.130792 0.213566 0.171984 937.67 971.73 1.000
pi(G){all} 0.154383 0.000430 0.115777 0.197246 0.153665 883.85 956.49 1.001
pi(T){all} 0.382995 0.000873 0.324079 0.438182 0.383014 907.27 942.53 1.000
alpha{1,2} 0.581751 0.172991 0.159159 1.327740 0.468631 912.88 933.08 1.000
alpha{3} 2.606183 1.609897 0.698327 5.058081 2.335589 1365.20 1367.83 1.000
pinvar{all} 0.122708 0.007913 0.000063 0.290919 0.104895 965.80 1035.83 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C1
2 -- C11
3 -- C12
4 -- C14
5 -- C15
6 -- C17
7 -- C18
8 -- C19
9 -- C2
10 -- C20
11 -- C21
12 -- C22
13 -- C24
14 -- C25
15 -- C27
16 -- C29
17 -- C3
18 -- C31
19 -- C32
20 -- C33
21 -- C34
22 -- C36
23 -- C39
24 -- C4
25 -- C42
26 -- C5
27 -- C6
28 -- C7
29 -- C8
30 -- C9
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
------------------------------------
1 -- .*****************************
2 -- .*............................
3 -- ..*...........................
4 -- ...*..........................
5 -- ....*.........................
6 -- .....*........................
7 -- ......*.......................
8 -- .......*......................
9 -- ........*.....................
10 -- .........*....................
11 -- ..........*...................
12 -- ...........*..................
13 -- ............*.................
14 -- .............*................
15 -- ..............*...............
16 -- ...............*..............
17 -- ................*.............
18 -- .................*............
19 -- ..................*...........
20 -- ...................*..........
21 -- ....................*.........
22 -- .....................*........
23 -- ......................*.......
24 -- .......................*......
25 -- ........................*.....
26 -- .........................*....
27 -- ..........................*...
28 -- ...........................*..
29 -- ............................*.
30 -- .............................*
31 -- .*******.*..................**
32 -- .*.*****.*...................*
33 -- ...*****.*....................
34 -- .*.*****.*..................**
35 -- ..............*..*...*........
36 -- .*********...............*****
37 -- .*********................*.**
38 -- ...*.***......................
39 -- ...*****......................
40 -- ...*****.*...................*
41 -- ........*.................*...
42 -- ...*.***.*....................
43 -- .........................*.*..
44 -- ..............*......*........
45 -- ..............*..*............
46 -- .................*...*........
47 -- .*********..................**
48 -- .*********...............**.**
49 -- .*.*****.*....................
50 -- .*********................****
51 -- .*******.*................*.**
52 -- .*...........................*
53 -- .....*.*......................
54 -- ......**......................
55 -- ...*.*........................
56 -- ...*..*.......................
57 -- .....**.......................
58 -- ...*...*......................
59 -- ...*.*.*......................
60 -- ...*..**......................
61 -- .....***......................
62 -- ...*.**.......................
------------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
31 3001 0.999667 0.000471 0.999334 1.000000 2
32 2991 0.996336 0.001413 0.995336 0.997335 2
33 2934 0.977348 0.003769 0.974684 0.980013 2
34 2843 0.947035 0.009893 0.940040 0.954031 2
35 2746 0.914724 0.001884 0.913391 0.916056 2
36 2594 0.864091 0.016017 0.852765 0.875416 2
37 2552 0.850100 0.000000 0.850100 0.850100 2
38 1586 0.528314 0.016017 0.516989 0.539640 2
39 1564 0.520986 0.023555 0.504330 0.537642 2
40 1368 0.455696 0.005653 0.451699 0.459694 2
41 1212 0.403731 0.005653 0.399734 0.407728 2
42 1138 0.379081 0.032976 0.355763 0.402398 2
43 1031 0.343438 0.008009 0.337775 0.349101 2
44 999 0.332778 0.006124 0.328448 0.337109 2
45 985 0.328115 0.001413 0.327115 0.329114 2
46 968 0.322452 0.004711 0.319121 0.325783 2
47 890 0.296469 0.009422 0.289807 0.303131 2
48 886 0.295137 0.011306 0.287142 0.303131 2
49 866 0.288474 0.005653 0.284477 0.292472 2
50 862 0.287142 0.009422 0.280480 0.293804 2
51 851 0.283478 0.007066 0.278481 0.288474 2
52 753 0.250833 0.002355 0.249167 0.252498 2
53 542 0.180546 0.005653 0.176549 0.184544 2
54 533 0.177548 0.015546 0.166556 0.188541 2
55 514 0.171219 0.003769 0.168554 0.173884 2
56 490 0.163225 0.000942 0.162558 0.163891 2
57 468 0.155896 0.000942 0.155230 0.156562 2
58 466 0.155230 0.000000 0.155230 0.155230 2
59 428 0.142572 0.006595 0.137908 0.147235 2
60 417 0.138907 0.017430 0.126582 0.151233 2
61 416 0.138574 0.002827 0.136576 0.140573 2
62 398 0.132578 0.001884 0.131246 0.133911 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.003394 0.000013 0.000001 0.010359 0.002264 1.000 2
length{all}[2] 0.012867 0.000057 0.000412 0.027402 0.011611 1.000 2
length{all}[3] 0.043221 0.000245 0.014930 0.073338 0.041314 1.000 2
length{all}[4] 0.007012 0.000026 0.000168 0.016371 0.005946 1.001 2
length{all}[5] 0.004113 0.000015 0.000001 0.012000 0.002990 1.000 2
length{all}[6] 0.003419 0.000012 0.000001 0.010084 0.002340 1.000 2
length{all}[7] 0.003411 0.000012 0.000000 0.010257 0.002388 1.000 2
length{all}[8] 0.003493 0.000012 0.000000 0.010340 0.002457 1.000 2
length{all}[9] 0.003405 0.000012 0.000001 0.010120 0.002361 1.000 2
length{all}[10] 0.015909 0.000063 0.002308 0.030986 0.014537 1.000 2
length{all}[11] 0.003463 0.000013 0.000001 0.010355 0.002354 1.000 2
length{all}[12] 0.006874 0.000025 0.000049 0.016500 0.005674 1.000 2
length{all}[13] 0.003446 0.000012 0.000000 0.010163 0.002369 1.000 2
length{all}[14] 0.003402 0.000011 0.000000 0.009975 0.002230 1.000 2
length{all}[15] 0.003483 0.000012 0.000003 0.010445 0.002452 1.000 2
length{all}[16] 0.003555 0.000013 0.000000 0.010756 0.002437 1.001 2
length{all}[17] 0.003416 0.000012 0.000000 0.010070 0.002424 1.000 2
length{all}[18] 0.003511 0.000013 0.000001 0.010748 0.002332 1.000 2
length{all}[19] 0.003275 0.000011 0.000001 0.009714 0.002284 1.000 2
length{all}[20] 0.006635 0.000022 0.000343 0.016444 0.005461 1.000 2
length{all}[21] 0.003260 0.000011 0.000001 0.009852 0.002198 1.000 2
length{all}[22] 0.003429 0.000013 0.000000 0.010697 0.002311 1.000 2
length{all}[23] 0.003354 0.000011 0.000003 0.009794 0.002336 1.000 2
length{all}[24] 0.003439 0.000012 0.000001 0.010346 0.002401 1.000 2
length{all}[25] 0.003398 0.000013 0.000000 0.010491 0.002268 1.002 2
length{all}[26] 0.003541 0.000013 0.000001 0.010866 0.002357 1.000 2
length{all}[27] 0.003370 0.000011 0.000001 0.009967 0.002341 1.000 2
length{all}[28] 0.003530 0.000012 0.000000 0.010424 0.002517 1.000 2
length{all}[29] 0.201355 0.002113 0.117030 0.289209 0.196975 1.001 2
length{all}[30] 0.017508 0.000071 0.003397 0.034245 0.016017 1.000 2
length{all}[31] 0.047349 0.000286 0.019171 0.082312 0.045116 1.000 2
length{all}[32] 0.049266 0.000387 0.014498 0.088492 0.046480 1.000 2
length{all}[33] 0.012460 0.000057 0.001246 0.027659 0.010898 1.000 2
length{all}[34] 0.033089 0.000264 0.004464 0.063492 0.030773 1.000 2
length{all}[35] 0.006794 0.000025 0.000260 0.016488 0.005676 1.000 2
length{all}[36] 0.007006 0.000026 0.000156 0.016417 0.005834 1.000 2
length{all}[37] 0.006735 0.000025 0.000103 0.016616 0.005548 1.002 2
length{all}[38] 0.006275 0.000023 0.000011 0.015879 0.005095 1.000 2
length{all}[39] 0.007145 0.000028 0.000011 0.017336 0.005900 1.000 2
length{all}[40] 0.007361 0.000038 0.000015 0.019577 0.005929 1.000 2
length{all}[41] 0.004448 0.000019 0.000002 0.012583 0.003242 0.999 2
length{all}[42] 0.006472 0.000025 0.000015 0.015636 0.005316 0.999 2
length{all}[43] 0.004231 0.000019 0.000001 0.012965 0.002701 1.001 2
length{all}[44] 0.003793 0.000016 0.000001 0.011665 0.002544 0.999 2
length{all}[45] 0.003502 0.000012 0.000001 0.010377 0.002439 1.002 2
length{all}[46] 0.003603 0.000014 0.000008 0.011301 0.002399 1.000 2
length{all}[47] 0.003325 0.000012 0.000002 0.010236 0.002137 1.003 2
length{all}[48] 0.003896 0.000016 0.000011 0.011634 0.002545 1.002 2
length{all}[49] 0.005050 0.000024 0.000005 0.015451 0.003717 1.002 2
length{all}[50] 0.003687 0.000012 0.000001 0.010651 0.002540 1.000 2
length{all}[51] 0.003461 0.000011 0.000002 0.010140 0.002438 1.004 2
length{all}[52] 0.005187 0.000025 0.000009 0.014801 0.003656 0.999 2
length{all}[53] 0.003371 0.000012 0.000001 0.009878 0.002409 0.998 2
length{all}[54] 0.003459 0.000011 0.000003 0.010362 0.002558 0.998 2
length{all}[55] 0.003440 0.000012 0.000001 0.010615 0.002269 1.000 2
length{all}[56] 0.003521 0.000013 0.000007 0.009801 0.002503 0.998 2
length{all}[57] 0.003409 0.000013 0.000021 0.010956 0.002307 1.001 2
length{all}[58] 0.003702 0.000014 0.000011 0.011158 0.002434 0.998 2
length{all}[59] 0.003283 0.000011 0.000003 0.009852 0.002257 0.998 2
length{all}[60] 0.003468 0.000013 0.000001 0.010613 0.002282 1.011 2
length{all}[61] 0.003192 0.000010 0.000002 0.009786 0.002161 0.998 2
length{all}[62] 0.003224 0.000012 0.000029 0.011000 0.002271 0.998 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.007449
Maximum standard deviation of split frequencies = 0.032976
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.011
Clade credibility values:
/---------------------------------------------------------------------- C1 (1)
|
|---------------------------------------------------------------------- C21 (11)
|
|---------------------------------------------------------------------- C22 (12)
|
|---------------------------------------------------------------------- C24 (13)
|
|---------------------------------------------------------------------- C25 (14)
|
|---------------------------------------------------------------------- C29 (16)
|
|---------------------------------------------------------------------- C3 (17)
|
|---------------------------------------------------------------------- C32 (19)
|
|---------------------------------------------------------------------- C33 (20)
|
|---------------------------------------------------------------------- C34 (21)
|
|---------------------------------------------------------------------- C39 (23)
|
|---------------------------------------------------------------------- C4 (24)
|
|---------------------------------------------------------------------- C42 (25)
|
| /-------- C27 (15)
| |
+------------------------------91-----------------------------+-------- C31 (18)
| |
| \-------- C36 (22)
|
| /------------------------------- C11 (2)
| |
| | /-------- C14 (4)
| | |
| | |-------- C17 (6)
| | /---53--+
| | | |-------- C18 (7)
| /--100--+ | |
| | | /--52--+ \-------- C19 (8)
| | | | |
| | |---98--+ \---------------- C15 (5)
| | | |
| /---95--+ | \----------------------- C20 (10)
| | | |
| | | \------------------------------- C9 (30)
| /--100-+ |
| | | \--------------------------------------- C8 (29)
| | |
| | \----------------------------------------------- C12 (3)
| /---85--+
| | |------------------------------------------------------ C2 (9)
| | |
| | \------------------------------------------------------ C6 (27)
\---86--+
|-------------------------------------------------------------- C5 (26)
|
\-------------------------------------------------------------- C7 (28)
Phylogram (based on average branch lengths):
/- C1 (1)
|
|- C21 (11)
|
|- C22 (12)
|
|- C24 (13)
|
|- C25 (14)
|
|- C29 (16)
|
|- C3 (17)
|
|- C32 (19)
|
|- C33 (20)
|
|- C34 (21)
|
|- C39 (23)
|
|- C4 (24)
|
|- C42 (25)
|
|/- C27 (15)
||
++- C31 (18)
||
|\- C36 (22)
|
| /--- C11 (2)
| |
| | /- C14 (4)
| | |
| | | C17 (6)
| | /+
| | || C18 (7)
| /----------+ ||
| | | /-+\ C19 (8)
| | | | |
| | |--+ \ C15 (5)
| | | |
| /-------+ | \---- C20 (10)
| | | |
| | | \---- C9 (30)
| /----------+ |
| | | \------------------------------------------------- C8 (29)
| | |
| | \---------- C12 (3)
|/-+
|| | C2 (9)
|| |
|| \ C6 (27)
\+
|- C5 (26)
|
\- C7 (28)
|-----------| 0.050 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3002 trees sampled):
50 % credible set contains 1501 trees
90 % credible set contains 2702 trees
95 % credible set contains 2852 trees
99 % credible set contains 2972 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Fri Nov 04 00:59:53 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/229E_human_USA_932_72_1993_E_AGT21362_1_1993_02_22_USA_Human_Human_coronavirus_229E.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.07 sec, SCORE=1000, Nseq=43, Len=77
C1 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C2 MFLKLVDDHALVVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C3 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C4 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C5 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C6 MFLKLVDDHALVVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C7 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C8 MFLKLVDDHAIIVNVILWLIVLLVVLLICITLIKLIKLCFTCHMFCSRTV
C9 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTV
C10 MFLKLVDDHAIIVNVLLWLIVLLVVLLICITLIKLIKLCFTCHMFCSRTV
C11 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTV
C12 MFLKLVDDHALVVNVLLWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C13 MFLKLVDDHALVVNVLLWCVVLIVVLLVCITIIKLIKLCFTCHMFCNRTV
C14 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C15 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTV
C16 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C17 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C18 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C19 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
C20 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTF
C21 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C22 MFLKLVDDHALIVNVLIWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C23 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C24 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C25 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C26 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C27 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C28 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C29 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C30 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C31 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C32 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C33 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C34 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C35 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C36 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C37 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C38 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C39 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C40 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C41 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C42 MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTV
C43 MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTI
**********::***::* :**:*:**:***:**************.:*.
C1 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C2 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C3 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C4 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C5 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C6 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C7 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C8 YDPVRNAYHIYQSYMHIDPFPK-FPDV
C9 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C10 YNPVRNAYHIYQSYMHIDPFPT--FDV
C11 YGPIKNVYHIYQSYMHIDPFPTQIIDV
C12 YGPIKNVYHIYQSYMHIDPFPKQVISV
C13 YGPIKNVYHIYQSYMHIDPFPKQIIDV
C14 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C15 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C16 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C17 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C18 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C19 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C20 YGPIKNVYHIYQSYMHIDPFPRQIIDV
C21 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C22 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C23 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C24 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C25 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C26 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C27 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C28 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C29 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C30 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C31 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C32 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C33 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C34 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C35 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C36 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C37 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C38 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C39 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C40 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C41 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C42 YGPIKNVYHIYQSYMHIDPFPKRVIDF
C43 YGPIKNVYHIYQSYMHIDPFPRQIIDV
*.*::*.************** ..
-- Starting log on Fri Nov 04 04:51:23 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/229E_human_USA_932_72_1993_E_AGT21362_1_1993_02_22_USA_Human_Human_coronavirus_229E.result/original_alignment/codeml,229E_human_USA_932_72_1993_E_AGT21362_1_1993_02_22_USA_Human_Human_coronavirus_229E.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C9 231 sites
reading seq# 2 C21 231 sites
reading seq# 3 C5 231 sites
reading seq# 4 C1 231 sites
reading seq# 5 C42 231 sites
reading seq# 6 C29 231 sites
reading seq# 7 C18 231 sites
reading seq# 8 C31 231 sites
reading seq# 9 C4 231 sites
reading seq#10 C36 231 sites
reading seq#11 C2 231 sites
reading seq#12 C11 231 sites
reading seq#13 C39 231 sites
reading seq#14 C25 231 sites
reading seq#15 C14 231 sites
reading seq#16 C3 231 sites
reading seq#17 C8 231 sites
reading seq#18 C6 231 sites
reading seq#19 C24 231 sites
reading seq#20 C22 231 sites
reading seq#21 C27 231 sites
reading seq#22 C19 231 sites
reading seq#23 C32 231 sites
reading seq#24 C33 231 sites
reading seq#25 C34 231 sites
reading seq#26 C17 231 sites
reading seq#27 C12 231 sites
reading seq#28 C15 231 sites
reading seq#29 C20 231 sites
reading seq#30 C7 231 sitesns = 30 ls = 231
Reading sequences, sequential format..
Reading seq # 1: C9
Reading seq # 2: C21
Reading seq # 3: C5
Reading seq # 4: C1
Reading seq # 5: C42
Reading seq # 6: C29
Reading seq # 7: C18
Reading seq # 8: C31
Reading seq # 9: C4
Reading seq #10: C36
Reading seq #11: C2
Reading seq #12: C11
Reading seq #13: C39
Reading seq #14: C25
Reading seq #15: C14
Reading seq #16: C3
Reading seq #17: C8
Reading seq #18: C6
Reading seq #19: C24
Reading seq #20: C22
Reading seq #21: C27
Reading seq #22: C19
Reading seq #23: C32
Reading seq #24: C33
Reading seq #25: C34
Reading seq #26: C17
Reading seq #27: C12
Reading seq #28: C15
Reading seq #29: C20
Reading seq #30: C7
Sites with gaps or missing data are removed.
3 ambiguity characters in seq. 17
1 sites are removed. 73
Sequences read..
Counting site patterns.. 0:00
Compressing, 71 patterns at 76 / 76 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 71 patterns at 76 / 76 sites (100.0%), 0:00
Counting codons..
3480 bytes for distance
69296 bytes for conP
6248 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(4, 2, 20, 19, 14, 6, 16, 23, 24, 25, 13, 9, 5, (21, 8, 10), (((((12, (((15, 26, 7, 22), 28), 29), 1), 17), 27), 11, 18), 3, 30)); MP score: 91
346480 bytes for conP, adjusted
0.046863 0.082680 0.049433 0.098544 0.030527 0.084486 0.066882 0.063353 0.047871 0.097442 0.038330 0.036094 0.066582 0.094499 0.083938 0.059849 0.024276 0.072417 0.017594 0.089241 0.098434 0.050442 0.067582 0.026752 0.032103 0.075129 0.033492 0.061292 0.095053 0.067269 0.046536 0.082453 0.035059 0.021825 0.075475 0.018877 0.049015 0.046847 0.095342 0.300000 0.556776 0.442794
ntime & nrate & np: 39 2 42
Bounds (np=42):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 8.448448
np = 42
lnL0 = -1041.995345
Iterating by ming2
Initial: fx= 1041.995345
x= 0.04686 0.08268 0.04943 0.09854 0.03053 0.08449 0.06688 0.06335 0.04787 0.09744 0.03833 0.03609 0.06658 0.09450 0.08394 0.05985 0.02428 0.07242 0.01759 0.08924 0.09843 0.05044 0.06758 0.02675 0.03210 0.07513 0.03349 0.06129 0.09505 0.06727 0.04654 0.08245 0.03506 0.02183 0.07548 0.01888 0.04902 0.04685 0.09534 0.30000 0.55678 0.44279
1 h-m-p 0.0000 0.0003 1822.4170 +++ 883.934422 m 0.0003 48 | 1/42
2 h-m-p 0.0000 0.0001 369.4841 ++ 873.649470 m 0.0001 93 | 2/42
3 h-m-p 0.0000 0.0000 4733.7099 ++ 863.579279 m 0.0000 138 | 3/42
4 h-m-p 0.0000 0.0000 14351.1031 ++ 854.510367 m 0.0000 183 | 4/42
5 h-m-p 0.0000 0.0000 3529.5820 ++ 850.967202 m 0.0000 228 | 5/42
6 h-m-p 0.0000 0.0000 1429.7085 ++ 838.283238 m 0.0000 273 | 6/42
7 h-m-p 0.0000 0.0000 2592.3297 ++ 838.248005 m 0.0000 318 | 7/42
8 h-m-p 0.0000 0.0000 53841.4348 ++ 837.998302 m 0.0000 363 | 8/42
9 h-m-p 0.0000 0.0000 3479.8006 ++ 835.257913 m 0.0000 408 | 9/42
10 h-m-p 0.0000 0.0000 2460.7066 ++ 823.804793 m 0.0000 453 | 10/42
11 h-m-p 0.0000 0.0000 2550.2177 ++ 823.317437 m 0.0000 498 | 11/42
12 h-m-p 0.0000 0.0000 6493.2420 ++ 820.828298 m 0.0000 543 | 12/42
13 h-m-p 0.0000 0.0000 8973.0046 ++ 818.263354 m 0.0000 588 | 13/42
14 h-m-p 0.0000 0.0000 23209.9133 ++ 818.099585 m 0.0000 633 | 14/42
15 h-m-p 0.0000 0.0000 388730.5498 ++ 817.869279 m 0.0000 678 | 15/42
16 h-m-p 0.0000 0.0000 2501.1177 ++ 807.963884 m 0.0000 723 | 16/42
17 h-m-p 0.0000 0.0000 296071.1214 ++ 806.952318 m 0.0000 768 | 17/42
18 h-m-p 0.0000 0.0000 73109.7752 ++ 806.939367 m 0.0000 813 | 18/42
19 h-m-p 0.0000 0.0000 2915.0606 ++ 803.609013 m 0.0000 858 | 19/42
20 h-m-p 0.0000 0.0000 4892.3454 ++ 802.320329 m 0.0000 903 | 20/42
21 h-m-p 0.0000 0.0000 235250.4685 ++ 802.040083 m 0.0000 948 | 21/42
22 h-m-p 0.0000 0.0000 859.2392 ++ 801.854673 m 0.0000 993 | 22/42
23 h-m-p 0.0000 0.0003 708.5056 +++ 794.458645 m 0.0003 1039 | 22/42
24 h-m-p 0.0009 0.0046 11.3322 ++ 791.024910 m 0.0046 1084 | 23/42
25 h-m-p 0.0005 0.0027 31.8922 +YYYYYCCCCC 786.988974 9 0.0022 1143 | 23/42
26 h-m-p 0.0002 0.0009 94.1393 +YYYCCC 784.736542 5 0.0006 1196 | 23/42
27 h-m-p 0.0014 0.0068 20.4927 +YYYYCYCCC 778.659839 8 0.0057 1253 | 23/42
28 h-m-p 0.0005 0.0027 43.0798 +YYCC 776.444359 3 0.0019 1303 | 23/42
29 h-m-p 0.0023 0.0113 15.8154 +YYCCC 771.905948 4 0.0076 1355 | 22/42
30 h-m-p 0.0002 0.0008 131.9936 YCCCC 770.942895 4 0.0003 1407 | 22/42
31 h-m-p 0.0024 0.0119 7.8467 +YCCC 769.327405 3 0.0062 1458 | 22/42
32 h-m-p 0.0001 0.0007 60.5639 ++ 766.775797 m 0.0007 1503 | 22/42
33 h-m-p 0.0097 0.0484 2.2382 +YYYCYYCCC 760.247919 8 0.0430 1561 | 22/42
34 h-m-p 0.0097 0.0487 1.2112 +YYYYCCC 757.692768 6 0.0371 1615 | 22/42
35 h-m-p 0.0269 0.3039 1.6686 +CCCC 752.360942 3 0.1570 1667 | 22/42
36 h-m-p 0.1135 0.5676 0.9788 YCYC 747.673679 3 0.2520 1716 | 22/42
37 h-m-p 0.0499 0.2493 0.7122 +YYYYYYYC 743.482889 7 0.1986 1789 | 22/42
38 h-m-p 0.0504 0.2522 1.0100 +YYYCYCYC 737.369375 7 0.2177 1864 | 22/42
39 h-m-p 0.0226 0.1132 0.7884 ++ 735.141799 m 0.1132 1909 | 23/42
40 h-m-p 0.1287 1.6297 0.5586 +YCYC 733.026436 3 0.3656 1979 | 23/42
41 h-m-p 0.2679 1.3396 0.2231 +YYYYCCC 730.296299 6 1.0300 2052 | 23/42
42 h-m-p 0.4162 2.0811 0.3279 +YCYCCC 727.634188 5 1.1307 2125 | 23/42
43 h-m-p 0.1811 0.9053 0.6527 YCCC 726.297355 3 0.4319 2194 | 23/42
44 h-m-p 0.6386 3.1930 0.3554 +YCCC 724.312519 3 1.7828 2264 | 22/42
45 h-m-p 0.0066 0.0330 17.9288 YC 724.159420 1 0.0052 2329 | 22/42
46 h-m-p 0.2094 4.8431 0.4488 +CYCC 722.951207 3 1.0993 2380 | 22/42
47 h-m-p 0.6228 3.1141 0.3785 +YCYCCC 721.118540 5 1.7496 2454 | 22/42
48 h-m-p 0.6728 3.3642 0.5749 CCCCC 719.827990 4 1.1149 2527 | 22/42
49 h-m-p 0.4930 2.4648 0.4265 CCCC 719.436156 3 0.7487 2598 | 22/42
50 h-m-p 1.6000 8.0000 0.1613 CCCC 718.978860 3 1.9701 2669 | 22/42
51 h-m-p 1.2690 6.3449 0.2503 CCCCC 718.568539 4 1.6363 2742 | 22/42
52 h-m-p 1.6000 8.0000 0.0247 CCC 718.323397 2 1.5822 2811 | 22/42
53 h-m-p 1.3479 8.0000 0.0290 +YCCC 718.010472 3 3.4988 2882 | 22/42
54 h-m-p 1.6000 8.0000 0.0455 +CCC 717.266614 2 5.4235 2952 | 22/42
55 h-m-p 1.4128 7.0642 0.0921 CCCCC 716.382793 4 2.4998 3025 | 22/42
56 h-m-p 0.8180 6.8721 0.2814 +YYCC 715.165178 3 2.4955 3095 | 22/42
57 h-m-p 1.1110 5.5548 0.1340 CCCCC 714.446332 4 1.9794 3168 | 22/42
58 h-m-p 1.1303 8.0000 0.2347 CCC 714.209287 2 0.9668 3237 | 22/42
59 h-m-p 1.6000 8.0000 0.1039 CCCC 714.099486 3 1.7295 3308 | 22/42
60 h-m-p 1.6000 8.0000 0.0453 CCC 714.055735 2 1.9812 3377 | 22/42
61 h-m-p 0.7012 8.0000 0.1280 +CC 714.019097 1 2.8266 3445 | 22/42
62 h-m-p 1.6000 8.0000 0.0455 CC 714.005837 1 2.0251 3512 | 22/42
63 h-m-p 1.6000 8.0000 0.0379 CC 714.000998 1 2.0432 3579 | 22/42
64 h-m-p 1.6000 8.0000 0.0211 C 713.998300 0 1.6793 3644 | 22/42
65 h-m-p 1.6000 8.0000 0.0079 CC 713.996447 1 2.4632 3711 | 22/42
66 h-m-p 1.6000 8.0000 0.0032 ++ 713.986947 m 8.0000 3776 | 22/42
67 h-m-p 0.7358 8.0000 0.0351 +CC 713.953219 1 3.3839 3844 | 22/42
68 h-m-p 1.6000 8.0000 0.0238 +YC 713.827369 1 7.0511 3911 | 22/42
69 h-m-p 1.6000 8.0000 0.0239 YCCC 713.742217 3 2.8047 3981 | 22/42
70 h-m-p 1.4842 8.0000 0.0451 CCC 713.677374 2 2.1646 4050 | 22/42
71 h-m-p 1.6000 8.0000 0.0325 CCC 713.637872 2 2.1457 4119 | 22/42
72 h-m-p 0.8095 8.0000 0.0860 +YCCC 713.573851 3 4.6540 4190 | 22/42
73 h-m-p 1.6000 8.0000 0.0482 YCCC 713.402370 3 3.5132 4260 | 22/42
74 h-m-p 0.8735 6.3940 0.1939 YCCCC 713.213466 4 1.7558 4332 | 22/42
75 h-m-p 1.4421 7.2103 0.1455 CYC 713.063931 2 1.3644 4400 | 22/42
76 h-m-p 0.8745 7.1217 0.2270 CCCC 712.977940 3 1.2983 4471 | 22/42
77 h-m-p 1.6000 8.0000 0.0615 CCC 712.958728 2 1.3168 4540 | 22/42
78 h-m-p 1.6000 8.0000 0.0266 YC 712.953614 1 1.2034 4606 | 22/42
79 h-m-p 1.6000 8.0000 0.0161 YC 712.952959 1 1.0042 4672 | 22/42
80 h-m-p 1.6000 8.0000 0.0030 C 712.952925 0 1.3018 4737 | 22/42
81 h-m-p 1.6000 8.0000 0.0006 C 712.952919 0 1.4295 4802 | 22/42
82 h-m-p 1.6000 8.0000 0.0002 C 712.952919 0 1.3287 4867 | 22/42
83 h-m-p 1.2419 8.0000 0.0002 C 712.952919 0 1.3346 4932 | 22/42
84 h-m-p 1.6000 8.0000 0.0000 C 712.952919 0 1.3831 4997 | 22/42
85 h-m-p 1.6000 8.0000 0.0000 C 712.952919 0 1.6000 5062 | 22/42
86 h-m-p 1.6000 8.0000 0.0000 --------------Y 712.952919 0 0.0000 5141
Out..
lnL = -712.952919
5142 lfun, 15426 eigenQcodon, 401076 P(t)
end of tree file.
Time used: 1:56
Model 2: PositiveSelection
TREE # 1
(4, 2, 20, 19, 14, 6, 16, 23, 24, 25, 13, 9, 5, (21, 8, 10), (((((12, (((15, 26, 7, 22), 28), 29), 1), 17), 27), 11, 18), 3, 30)); MP score: 91
0.102282 0.011138 0.108943 0.109894 0.074627 0.103700 0.091937 0.032499 0.098358 0.039928 0.019495 0.086413 0.010078 0.064548 0.075979 0.102781 0.096304 0.065609 0.084087 0.017346 0.070866 0.080901 0.068319 0.011584 0.092811 0.087471 0.030068 0.011158 0.010786 0.091438 0.057776 0.046388 0.094818 0.010289 0.070572 0.054413 0.091436 0.014837 0.068858 4.906641 1.477497 0.115337 0.352155 1.378670
ntime & nrate & np: 39 3 44
Bounds (np=44):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 3.074369
np = 44
lnL0 = -1009.011230
Iterating by ming2
Initial: fx= 1009.011230
x= 0.10228 0.01114 0.10894 0.10989 0.07463 0.10370 0.09194 0.03250 0.09836 0.03993 0.01949 0.08641 0.01008 0.06455 0.07598 0.10278 0.09630 0.06561 0.08409 0.01735 0.07087 0.08090 0.06832 0.01158 0.09281 0.08747 0.03007 0.01116 0.01079 0.09144 0.05778 0.04639 0.09482 0.01029 0.07057 0.05441 0.09144 0.01484 0.06886 4.90664 1.47750 0.11534 0.35216 1.37867
1 h-m-p 0.0000 0.0002 3428.4820 +++ 839.130069 m 0.0002 50 | 1/44
2 h-m-p 0.0000 0.0000 332.3441 ++ 837.834597 m 0.0000 97 | 2/44
3 h-m-p 0.0000 0.0000 3392.9157 ++ 837.328979 m 0.0000 144 | 3/44
4 h-m-p 0.0000 0.0000 111419.8485 ++ 837.272215 m 0.0000 191 | 4/44
5 h-m-p 0.0000 0.0000 2259.5211 ++ 831.872037 m 0.0000 238 | 5/44
6 h-m-p 0.0000 0.0000 812.3344 ++ 825.957840 m 0.0000 285 | 6/44
7 h-m-p 0.0000 0.0001 1014.5221 ++ 811.554576 m 0.0001 332 | 7/44
8 h-m-p 0.0000 0.0000 68126760.6055 ++ 803.679379 m 0.0000 379 | 8/44
9 h-m-p 0.0000 0.0000 1352.5840 ++ 788.367396 m 0.0000 426 | 9/44
10 h-m-p 0.0000 0.0000 8266.4660 ++ 782.029503 m 0.0000 473 | 10/44
11 h-m-p 0.0000 0.0000 7463786.9446 ++ 774.747820 m 0.0000 520 | 11/44
12 h-m-p 0.0000 0.0000 13113.7424 ++ 769.213325 m 0.0000 567 | 12/44
13 h-m-p 0.0000 0.0000 8223.5222 ++ 768.369963 m 0.0000 614 | 13/44
14 h-m-p 0.0000 0.0000 3455.4273 ++ 760.762820 m 0.0000 661 | 14/44
15 h-m-p 0.0000 0.0000 3960.7083 ++ 757.645216 m 0.0000 708 | 15/44
16 h-m-p 0.0000 0.0000 1508.0059 ++ 757.196815 m 0.0000 755 | 16/44
17 h-m-p 0.0000 0.0000 1789.4618 ++ 756.388348 m 0.0000 802 | 17/44
18 h-m-p 0.0000 0.0000 1364.2926 ++ 755.423163 m 0.0000 849 | 18/44
19 h-m-p 0.0000 0.0000 1813.2191 ++ 753.277803 m 0.0000 896 | 19/44
20 h-m-p 0.0000 0.0000 699.4996 ++ 753.270327 m 0.0000 943 | 20/44
21 h-m-p 0.0000 0.0000 453.7736 ++ 753.014254 m 0.0000 990 | 21/44
22 h-m-p 0.0000 0.0000 372.3304 ++ 752.342114 m 0.0000 1037 | 22/44
23 h-m-p 0.0001 0.0024 43.7661 ++CYYCYCYC 748.273339 7 0.0020 1096 | 22/44
24 h-m-p 0.0001 0.0005 119.7968 +YYCYCC 746.887426 5 0.0004 1151 | 22/44
25 h-m-p 0.0001 0.0003 186.5002 +YYCYCC 745.696969 5 0.0002 1206 | 22/44
26 h-m-p 0.0001 0.0004 359.7460 +YYYCCC 742.224003 5 0.0003 1261 | 22/44
27 h-m-p 0.0002 0.0008 139.4581 +YYYYYY 739.667540 5 0.0007 1314 | 22/44
28 h-m-p 0.0001 0.0003 386.1393 +YYYCCC 737.871577 5 0.0002 1369 | 22/44
29 h-m-p 0.0001 0.0005 267.1926 ++ 734.518102 m 0.0005 1416 | 23/44
30 h-m-p 0.0002 0.0012 144.8749 +YYCCC 731.622877 4 0.0008 1470 | 23/44
31 h-m-p 0.0011 0.0054 14.9134 +YYCCC 730.259081 4 0.0037 1524 | 23/44
32 h-m-p 0.0046 0.0228 7.2867 CYCCC 729.079500 4 0.0090 1578 | 23/44
33 h-m-p 0.0011 0.0056 13.2477 CCCCC 728.702667 4 0.0020 1633 | 23/44
34 h-m-p 0.0067 0.0634 3.9873 +YCYCCC 727.328480 5 0.0363 1689 | 23/44
35 h-m-p 0.0099 0.0493 10.2422 YCCCC 726.094785 4 0.0179 1743 | 23/44
36 h-m-p 0.0075 0.0377 9.0206 CCCC 725.394406 3 0.0124 1796 | 23/44
37 h-m-p 0.0230 0.4579 4.8541 YCCC 724.152324 3 0.0545 1848 | 23/44
38 h-m-p 0.1551 1.0670 1.7046 +YCCC 722.687572 3 0.4670 1901 | 23/44
39 h-m-p 0.4702 2.3508 0.4379 YCCCC 722.240942 4 0.9074 1955 | 23/44
40 h-m-p 0.4919 2.4597 0.3332 CCC 721.878503 2 0.7495 2027 | 23/44
41 h-m-p 0.9343 8.0000 0.2673 YCC 721.277599 2 2.0766 2098 | 23/44
42 h-m-p 1.6000 8.0000 0.2596 YCCC 720.271176 3 2.6555 2171 | 23/44
43 h-m-p 1.6000 8.0000 0.1525 CCCC 719.281694 3 2.4417 2245 | 23/44
44 h-m-p 0.5197 8.0000 0.7166 YCCC 718.710463 3 0.8528 2318 | 23/44
45 h-m-p 1.6000 8.0000 0.3730 CYC 718.167044 2 1.6458 2389 | 23/44
46 h-m-p 1.6000 8.0000 0.2659 CCC 717.513877 2 2.5299 2461 | 23/44
47 h-m-p 1.6000 8.0000 0.1047 YCCC 716.789695 3 2.8662 2534 | 23/44
48 h-m-p 0.8756 4.3781 0.3069 YCCCC 716.011618 4 1.7610 2609 | 23/44
49 h-m-p 0.5963 2.9815 0.1104 YCYCCC 715.498801 5 1.4117 2685 | 23/44
50 h-m-p 0.7402 4.6944 0.2106 CYC 715.201947 2 0.6879 2756 | 23/44
51 h-m-p 0.5165 8.0000 0.2804 +CCC 714.826593 2 2.2339 2829 | 23/44
52 h-m-p 1.6000 8.0000 0.1672 CCCC 714.602905 3 2.0960 2903 | 23/44
53 h-m-p 1.6000 8.0000 0.2001 CYC 714.511815 2 1.6527 2974 | 23/44
54 h-m-p 1.6000 8.0000 0.0724 CC 714.479612 1 1.9268 3044 | 23/44
55 h-m-p 1.6000 8.0000 0.0410 CC 714.472902 1 1.3814 3114 | 23/44
56 h-m-p 1.0075 8.0000 0.0562 +YC 714.466747 1 3.0124 3184 | 23/44
57 h-m-p 1.6000 8.0000 0.1037 ++ 714.420292 m 8.0000 3252 | 23/44
58 h-m-p 0.0006 0.0078 1418.5038 YCYCYCCC 714.352193 7 0.0010 3331 | 23/44
59 h-m-p 1.6000 8.0000 0.8106 CCCC 714.334885 3 0.4894 3384 | 23/44
60 h-m-p 1.0434 8.0000 0.3802 CCC 714.262334 2 0.8481 3456 | 23/44
61 h-m-p 0.6444 8.0000 0.5004 CYCCC 714.201049 4 1.1643 3531 | 23/44
62 h-m-p 1.4519 7.2594 0.2632 YCCC 714.120604 3 0.8394 3604 | 23/44
63 h-m-p 0.8196 8.0000 0.2696 YCCCC 714.048596 4 1.6524 3679 | 23/44
64 h-m-p 1.6000 8.0000 0.1326 CCCC 713.862418 3 1.7540 3753 | 23/44
65 h-m-p 0.6086 8.0000 0.3822 +CCCCC 713.382581 4 3.1732 3830 | 23/44
66 h-m-p 0.4403 2.2014 0.5600 CCCC 713.185955 3 0.6704 3904 | 23/44
67 h-m-p 0.5413 5.1526 0.6936 YCCC 713.055702 3 0.9424 3977 | 23/44
68 h-m-p 1.6000 8.0000 0.2402 CC 712.994190 1 1.5240 4047 | 23/44
69 h-m-p 1.6000 8.0000 0.2122 CCC 712.967650 2 2.1279 4119 | 23/44
70 h-m-p 1.6000 8.0000 0.2611 CC 712.957389 1 1.4117 4189 | 23/44
71 h-m-p 1.6000 8.0000 0.0912 CC 712.953741 1 1.7793 4259 | 23/44
72 h-m-p 1.6000 8.0000 0.0225 C 712.953191 0 1.5428 4327 | 23/44
73 h-m-p 1.6000 8.0000 0.0114 CC 712.952995 1 2.2841 4397 | 23/44
74 h-m-p 1.6000 8.0000 0.0033 C 712.952944 0 1.4700 4465 | 23/44
75 h-m-p 1.6000 8.0000 0.0019 Y 712.952929 0 1.2676 4533 | 23/44
76 h-m-p 1.6000 8.0000 0.0012 C 712.952921 0 2.0027 4601 | 23/44
77 h-m-p 1.2558 8.0000 0.0019 C 712.952919 0 1.5480 4669 | 23/44
78 h-m-p 1.6000 8.0000 0.0003 C 712.952919 0 1.6000 4737 | 23/44
79 h-m-p 1.6000 8.0000 0.0002 C 712.952919 0 1.5343 4805 | 23/44
80 h-m-p 1.6000 8.0000 0.0000 C 712.952919 0 1.5998 4873 | 23/44
81 h-m-p 1.6000 8.0000 0.0000 Y 712.952919 0 1.0233 4941 | 23/44
82 h-m-p 1.6000 8.0000 0.0000 ---------------Y 712.952919 0 0.0000 5024
Out..
lnL = -712.952919
5025 lfun, 20100 eigenQcodon, 587925 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -721.203181 S = -675.872846 -79.736382
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 71 patterns 4:46
did 20 / 71 patterns 4:46
did 30 / 71 patterns 4:46
did 40 / 71 patterns 4:47
did 50 / 71 patterns 4:47
did 60 / 71 patterns 4:47
did 70 / 71 patterns 4:47
did 71 / 71 patterns 4:47end of tree file.
Time used: 4:47
Model 7: beta
TREE # 1
(4, 2, 20, 19, 14, 6, 16, 23, 24, 25, 13, 9, 5, (21, 8, 10), (((((12, (((15, 26, 7, 22), 28), 29), 1), 17), 27), 11, 18), 3, 30)); MP score: 91
0.088916 0.047652 0.012859 0.044376 0.045823 0.049408 0.096354 0.074805 0.057612 0.046686 0.072187 0.071814 0.015633 0.077852 0.048737 0.034156 0.019239 0.041134 0.105010 0.053442 0.101102 0.019375 0.031523 0.069503 0.031720 0.015618 0.068361 0.020189 0.057819 0.010477 0.082587 0.034038 0.104318 0.027216 0.102199 0.089256 0.044566 0.065483 0.098809 4.906642 0.474394 1.085267
ntime & nrate & np: 39 1 42
Bounds (np=42):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 4.461966
np = 42
lnL0 = -945.777117
Iterating by ming2
Initial: fx= 945.777117
x= 0.08892 0.04765 0.01286 0.04438 0.04582 0.04941 0.09635 0.07481 0.05761 0.04669 0.07219 0.07181 0.01563 0.07785 0.04874 0.03416 0.01924 0.04113 0.10501 0.05344 0.10110 0.01937 0.03152 0.06950 0.03172 0.01562 0.06836 0.02019 0.05782 0.01048 0.08259 0.03404 0.10432 0.02722 0.10220 0.08926 0.04457 0.06548 0.09881 4.90664 0.47439 1.08527
1 h-m-p 0.0000 0.0002 1622.0866 +++ 826.516969 m 0.0002 48 | 1/42
2 h-m-p 0.0000 0.0001 338.1360 ++ 818.156063 m 0.0001 93 | 2/42
3 h-m-p 0.0000 0.0000 1648909.2787 ++ 812.541077 m 0.0000 138 | 3/42
4 h-m-p 0.0000 0.0000 68788.4661 ++ 811.007986 m 0.0000 183 | 4/42
5 h-m-p 0.0000 0.0000 5575.4767 ++ 790.908102 m 0.0000 228 | 5/42
6 h-m-p 0.0000 0.0000 9178.5770 ++ 776.822914 m 0.0000 273 | 6/42
7 h-m-p 0.0000 0.0000 249293.5944 ++ 776.572353 m 0.0000 318 | 7/42
8 h-m-p 0.0000 0.0000 12638.7610 ++ 775.048617 m 0.0000 363 | 8/42
9 h-m-p 0.0000 0.0000 10446.9598 ++ 774.069643 m 0.0000 408 | 9/42
10 h-m-p 0.0000 0.0000 2600.5381 ++ 773.037713 m 0.0000 453 | 10/42
11 h-m-p 0.0000 0.0000 6402.0785 ++ 771.998662 m 0.0000 498 | 11/42
12 h-m-p 0.0000 0.0000 5510.5199 ++ 771.372087 m 0.0000 543 | 12/42
13 h-m-p 0.0000 0.0000 4250.3253 ++ 764.266130 m 0.0000 588 | 13/42
14 h-m-p 0.0000 0.0000 3009.6692 ++ 758.951975 m 0.0000 633 | 14/42
15 h-m-p 0.0000 0.0000 3344.5822 ++ 754.596394 m 0.0000 678 | 15/42
16 h-m-p 0.0000 0.0000 2618.9790 ++ 754.378159 m 0.0000 723 | 16/42
17 h-m-p 0.0000 0.0000 2300.5464 ++ 753.083777 m 0.0000 768 | 17/42
18 h-m-p 0.0000 0.0000 1391.2255 ++ 748.286582 m 0.0000 813 | 18/42
19 h-m-p 0.0000 0.0000 1449.5424 ++ 747.425228 m 0.0000 858 | 19/42
20 h-m-p 0.0000 0.0000 830.8681 ++ 747.251368 m 0.0000 903 | 20/42
21 h-m-p 0.0000 0.0000 662.4432 ++ 746.048412 m 0.0000 948 | 21/42
22 h-m-p 0.0000 0.0000 450.3510 ++ 745.828859 m 0.0000 993 | 22/42
23 h-m-p 0.0000 0.0029 28.8235 +++YYYCCC 743.819214 5 0.0022 1048 | 22/42
24 h-m-p 0.0006 0.0032 75.4647 +YCYCCC 741.291869 5 0.0018 1102 | 22/42
25 h-m-p 0.0003 0.0016 125.4037 YCCCCC 740.100548 5 0.0007 1156 | 22/42
26 h-m-p 0.0157 0.0783 4.9771 CCC 739.975321 2 0.0048 1205 | 22/42
27 h-m-p 0.0074 0.0970 3.2283 +YCYCCCC 739.457720 6 0.0406 1261 | 22/42
28 h-m-p 0.0183 0.1097 7.1533 YCCC 739.259332 3 0.0123 1311 | 22/42
29 h-m-p 0.0082 0.0785 10.7673 +YYC 738.616844 2 0.0270 1359 | 22/42
30 h-m-p 0.0036 0.0182 19.5375 YCCCC 738.301456 4 0.0078 1411 | 22/42
31 h-m-p 0.0069 0.0652 21.9969 +YCYCCC 736.861678 5 0.0349 1465 | 22/42
32 h-m-p 0.0504 0.2519 13.1760 YYC 735.943815 2 0.0419 1512 | 22/42
33 h-m-p 0.0434 0.2170 7.4103 YCCC 735.522732 3 0.0333 1562 | 22/42
34 h-m-p 0.0591 0.2955 3.2256 CCCCC 735.039420 4 0.0663 1615 | 22/42
35 h-m-p 0.0512 0.2559 2.1489 CCCCC 734.499359 4 0.0869 1668 | 22/42
36 h-m-p 0.0280 0.1401 2.7361 YCYCCC 733.785185 5 0.0721 1721 | 22/42
37 h-m-p 0.0301 0.1503 3.3413 YCCCC 733.003857 4 0.0597 1773 | 22/42
38 h-m-p 0.0195 0.0977 5.7623 YCCCCC 732.031083 5 0.0411 1827 | 22/42
39 h-m-p 0.0267 0.1335 6.1664 YCCCC 730.534236 4 0.0624 1879 | 22/42
40 h-m-p 0.0668 1.1006 5.7612 +YCCCC 727.682660 4 0.1663 1932 | 22/42
41 h-m-p 0.0493 0.2463 3.3792 YCYC 726.355369 3 0.0882 1981 | 22/42
42 h-m-p 0.1496 0.7480 0.7299 +YYYYYCYCCC 721.469502 9 0.6195 2039 | 22/42
43 h-m-p 0.4128 2.0642 0.6223 +YYCCC 716.398481 4 1.2353 2111 | 22/42
44 h-m-p 0.3101 1.5507 0.3806 YCC 714.554045 2 0.6613 2179 | 22/42
45 h-m-p 0.9356 4.9271 0.2690 YCCC 712.297028 3 2.2184 2249 | 22/42
46 h-m-p 0.9405 4.7027 0.1367 YCCCC 710.992557 4 2.1781 2321 | 22/42
47 h-m-p 0.8520 4.2598 0.1165 CCCC 710.441248 3 1.2057 2392 | 22/42
48 h-m-p 0.8942 7.4553 0.1571 YCCC 709.950670 3 1.9520 2462 | 22/42
49 h-m-p 1.6000 8.0000 0.1222 CCCC 709.682613 3 1.8860 2533 | 22/42
50 h-m-p 1.5165 7.5823 0.0767 CC 709.546398 1 1.5007 2600 | 22/42
51 h-m-p 1.1159 8.0000 0.1032 CCC 709.456039 2 1.7982 2669 | 22/42
52 h-m-p 1.6000 8.0000 0.0857 CCC 709.386785 2 2.2905 2738 | 22/42
53 h-m-p 1.4337 8.0000 0.1370 CCC 709.349002 2 1.7675 2807 | 22/42
54 h-m-p 1.6000 8.0000 0.0528 CC 709.329044 1 1.8791 2874 | 22/42
55 h-m-p 1.5557 8.0000 0.0637 CCC 709.317244 2 2.4044 2943 | 22/42
56 h-m-p 1.6000 8.0000 0.0382 CC 709.309834 1 2.0749 3010 | 22/42
57 h-m-p 1.6000 8.0000 0.0210 YC 709.306199 1 2.6945 3076 | 22/42
58 h-m-p 1.6000 8.0000 0.0236 C 709.305339 0 1.6969 3141 | 22/42
59 h-m-p 1.6000 8.0000 0.0072 C 709.305100 0 1.7545 3206 | 22/42
60 h-m-p 1.6000 8.0000 0.0048 +YC 709.304754 1 4.1857 3273 | 22/42
61 h-m-p 1.6000 8.0000 0.0016 CC 709.304558 1 2.0904 3340 | 22/42
62 h-m-p 1.2108 8.0000 0.0027 C 709.304531 0 1.6638 3405 | 22/42
63 h-m-p 1.6000 8.0000 0.0009 C 709.304528 0 1.6305 3470 | 22/42
64 h-m-p 1.6000 8.0000 0.0004 C 709.304528 0 1.3265 3535 | 22/42
65 h-m-p 1.6000 8.0000 0.0001 C 709.304528 0 1.5679 3600 | 22/42
66 h-m-p 1.6000 8.0000 0.0000 Y 709.304528 0 1.2775 3665 | 22/42
67 h-m-p 1.6000 8.0000 0.0000 Y 709.304528 0 0.7516 3730 | 22/42
68 h-m-p 1.6000 8.0000 0.0000 -Y 709.304528 0 0.1899 3796 | 22/42
69 h-m-p 0.1949 8.0000 0.0000 -----Y 709.304528 0 0.0000 3866
Out..
lnL = -709.304528
3867 lfun, 42537 eigenQcodon, 1508130 P(t)
end of tree file.
Time used: 12:04
Model 8: beta&w>1
TREE # 1
(4, 2, 20, 19, 14, 6, 16, 23, 24, 25, 13, 9, 5, (21, 8, 10), (((((12, (((15, 26, 7, 22), 28), 29), 1), 17), 27), 11, 18), 3, 30)); MP score: 91
0.039638 0.086249 0.065484 0.053592 0.032599 0.077280 0.044115 0.017728 0.051160 0.015587 0.086473 0.109631 0.043714 0.075267 0.015197 0.065582 0.016302 0.094973 0.011445 0.037685 0.057959 0.088922 0.094280 0.073182 0.061257 0.051941 0.053868 0.099536 0.099010 0.050745 0.036918 0.094950 0.093070 0.068633 0.057814 0.099031 0.086142 0.045791 0.083861 4.213094 0.900000 1.032818 1.925715 1.300000
ntime & nrate & np: 39 2 44
Bounds (np=44):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 4.146768
np = 44
lnL0 = -914.603705
Iterating by ming2
Initial: fx= 914.603705
x= 0.03964 0.08625 0.06548 0.05359 0.03260 0.07728 0.04412 0.01773 0.05116 0.01559 0.08647 0.10963 0.04371 0.07527 0.01520 0.06558 0.01630 0.09497 0.01145 0.03768 0.05796 0.08892 0.09428 0.07318 0.06126 0.05194 0.05387 0.09954 0.09901 0.05075 0.03692 0.09495 0.09307 0.06863 0.05781 0.09903 0.08614 0.04579 0.08386 4.21309 0.90000 1.03282 1.92572 1.30000
1 h-m-p 0.0000 0.0003 696.4012 +++ 838.323179 m 0.0003 50 | 1/44
2 h-m-p 0.0000 0.0000 389.8772 ++ 837.735348 m 0.0000 97 | 2/44
3 h-m-p 0.0000 0.0000 2541.0639 ++ 836.556385 m 0.0000 144 | 3/44
4 h-m-p 0.0000 0.0000 910.0215 ++ 834.272293 m 0.0000 191 | 4/44
5 h-m-p 0.0000 0.0004 247.2218 ++ 816.146068 m 0.0004 238 | 5/44
6 h-m-p 0.0000 0.0001 504.0337 ++ 810.552304 m 0.0001 285 | 6/44
7 h-m-p 0.0000 0.0000 1453.6369 ++ 808.888182 m 0.0000 332 | 7/44
8 h-m-p 0.0000 0.0000 80846.9889 ++ 805.318317 m 0.0000 379 | 8/44
9 h-m-p 0.0000 0.0000 2420.9369 ++ 805.004519 m 0.0000 426 | 9/44
10 h-m-p 0.0000 0.0000 8424.4873 ++ 803.610568 m 0.0000 473 | 10/44
11 h-m-p 0.0000 0.0000 15178.4866 ++ 800.432940 m 0.0000 520 | 11/44
12 h-m-p 0.0000 0.0000 15766.1320 ++ 798.661543 m 0.0000 567 | 12/44
13 h-m-p 0.0000 0.0000 12192.9606 ++ 792.198138 m 0.0000 614 | 13/44
14 h-m-p 0.0000 0.0000 121961.9273 ++ 786.551160 m 0.0000 661 | 14/44
15 h-m-p 0.0000 0.0000 219625.1652 ++ 783.485738 m 0.0000 708 | 15/44
16 h-m-p 0.0000 0.0000 3022.9150 ++ 783.007717 m 0.0000 755 | 16/44
17 h-m-p 0.0000 0.0000 2488.3790 ++ 782.964085 m 0.0000 802 | 17/44
18 h-m-p 0.0000 0.0000 1198.5403 ++ 782.910533 m 0.0000 849 | 18/44
19 h-m-p 0.0000 0.0000 732.2768 ++ 780.608875 m 0.0000 896 | 19/44
20 h-m-p 0.0000 0.0000 1166.5432 ++ 780.533430 m 0.0000 943 | 20/44
21 h-m-p 0.0000 0.0000 259.6061 ++ 780.436142 m 0.0000 990 | 21/44
22 h-m-p 0.0000 0.0000 294.1801 ++ 779.783931 m 0.0000 1037 | 22/44
23 h-m-p 0.0001 0.0017 95.9243 ++CYYCYYCCC 770.059152 8 0.0015 1099 | 22/44
24 h-m-p 0.0002 0.0008 119.9312 +YCYCCC 767.839894 5 0.0005 1155 | 22/44
25 h-m-p 0.0003 0.0014 53.6601 +YCYCCC 766.727335 5 0.0008 1211 | 22/44
26 h-m-p 0.0002 0.0010 87.7154 +YYYCCC 765.042301 5 0.0007 1266 | 22/44
27 h-m-p 0.0000 0.0001 445.5692 +YYCCCC 764.105993 5 0.0001 1322 | 22/44
28 h-m-p 0.0000 0.0001 651.2134 +YYCYC 762.729245 4 0.0001 1375 | 22/44
29 h-m-p 0.0001 0.0007 129.6173 +YYCCC 761.368143 4 0.0005 1429 | 22/44
30 h-m-p 0.0000 0.0002 327.2820 +CCC 760.323134 2 0.0002 1481 | 22/44
31 h-m-p 0.0000 0.0001 148.4096 ++ 759.861881 m 0.0001 1528 | 23/44
32 h-m-p 0.0000 0.0009 382.4227 +CYCCCC 759.066626 5 0.0003 1585 | 23/44
33 h-m-p 0.0010 0.0048 52.7227 YCYCCC 758.051836 5 0.0020 1640 | 23/44
34 h-m-p 0.0052 0.0344 20.5664 +
QuantileBeta(0.15, 0.00500, 2.37344) = 1.086214e-160 2000 rounds
YCYCCC 753.985179 5 0.0157 1696 | 22/44
35 h-m-p 0.0009 0.0047 90.2231 YCCC 753.279841 3 0.0018 1748 | 22/44
36 h-m-p 0.0040 0.0202 8.0014 +YYYCCC 751.586776 5 0.0149 1803 | 22/44
37 h-m-p 0.0210 0.2026 5.6964 ++ 746.806729 m 0.2026 1850 | 23/44
38 h-m-p 0.1529 0.7644 2.1647 +YYYCCC 740.087654 5 0.5491 1905 | 23/44
39 h-m-p 0.0772 0.3860 0.6571 ++ 734.769132 m 0.3860 1952 | 24/44
40 h-m-p 0.1379 2.5477 1.8061 +YCCCC 726.171369 4 1.1306 2028 | 24/44
41 h-m-p 0.1529 0.7647 1.1120 +YYCCCC 721.611755 5 0.4834 2084 | 24/44
42 h-m-p 0.2914 1.4569 1.3595 +YYCCC 718.431996 4 0.9028 2138 | 24/44
43 h-m-p 0.1400 0.6998 2.2013 CYCCC 717.563212 4 0.1851 2192 | 24/44
44 h-m-p 1.0991 5.4953 0.2174 YCCC 715.226321 3 2.0076 2244 | 24/44
45 h-m-p 0.4204 2.1019 0.6782 +YCCCC 713.169368 4 1.1270 2319 | 24/44
46 h-m-p 0.7545 3.7726 0.1782 CCCC 712.032057 3 1.2220 2392 | 24/44
47 h-m-p 0.7219 6.6191 0.3017 YCCC 711.163407 3 1.1731 2464 | 24/44
48 h-m-p 0.7201 3.6004 0.3887 YCCCC 710.604144 4 1.4296 2538 | 24/44
49 h-m-p 0.6683 3.3415 0.7492 CCCC 710.185875 3 0.8694 2611 | 24/44
50 h-m-p 1.5620 7.8101 0.3496 YYYC 709.965897 3 1.4061 2681 | 24/44
51 h-m-p 1.2091 6.0453 0.2289 YYCC 709.861141 3 0.8449 2752 | 24/44
52 h-m-p 1.6000 8.0000 0.0602 CCC 709.785040 2 1.3929 2823 | 24/44
53 h-m-p 1.2366 8.0000 0.0678 YCCC 709.701834 3 2.7011 2895 | 24/44
54 h-m-p 1.0011 8.0000 0.1829 YCC 709.624185 2 1.7554 2965 | 24/44
55 h-m-p 1.5193 7.5965 0.1003 CCCC 709.556823 3 1.6950 3038 | 24/44
56 h-m-p 1.6000 8.0000 0.0724 CCC 709.522296 2 2.0001 3109 | 24/44
57 h-m-p 1.6000 8.0000 0.0494 YCC 709.469155 2 3.2821 3179 | 24/44
58 h-m-p 1.6000 8.0000 0.0545 CC 709.425479 1 2.1606 3248 | 24/44
59 h-m-p 1.6000 8.0000 0.0530 YC 709.382511 1 3.6628 3316 | 24/44
60 h-m-p 1.6000 8.0000 0.0453 YC 709.344814 1 2.9457 3384 | 24/44
61 h-m-p 1.6000 8.0000 0.0139 CC 709.335223 1 1.9532 3453 | 24/44
62 h-m-p 1.3828 8.0000 0.0197 +CC 709.323941 1 4.7315 3523 | 24/44
63 h-m-p 1.6000 8.0000 0.0351 CC 709.315913 1 2.0449 3592 | 24/44
64 h-m-p 1.6000 8.0000 0.0108 YC 709.313272 1 2.6116 3660 | 24/44
65 h-m-p 1.6000 8.0000 0.0095 YC 709.310595 1 3.0783 3728 | 24/44
66 h-m-p 1.6000 8.0000 0.0067 +CC 709.307329 1 5.5002 3798 | 24/44
67 h-m-p 1.6000 8.0000 0.0117 CC 709.305075 1 2.2091 3867 | 24/44
68 h-m-p 1.6000 8.0000 0.0066 C 709.304719 0 1.5996 3934 | 24/44
69 h-m-p 1.6000 8.0000 0.0012 C 709.304665 0 1.4771 4001 | 24/44
70 h-m-p 1.5914 8.0000 0.0012 C 709.304657 0 1.4363 4068 | 24/44
71 h-m-p 1.6000 8.0000 0.0001 C 709.304656 0 2.4443 4135 | 24/44
72 h-m-p 0.7784 8.0000 0.0003 +Y 709.304655 0 2.3376 4203 | 24/44
73 h-m-p 1.6000 8.0000 0.0001 C 709.304655 0 2.2244 4270 | 24/44
74 h-m-p 1.6000 8.0000 0.0001 C 709.304655 0 2.0994 4337 | 24/44
75 h-m-p 1.6000 8.0000 0.0000 Y 709.304655 0 1.2445 4404 | 24/44
76 h-m-p 1.6000 8.0000 0.0000 Y 709.304655 0 1.0321 4471 | 24/44
77 h-m-p 1.6000 8.0000 0.0000 Y 709.304655 0 1.0169 4538 | 24/44
78 h-m-p 1.6000 8.0000 0.0000 Y 709.304655 0 1.6000 4605 | 24/44
79 h-m-p 1.6000 8.0000 0.0000 -----Y 709.304655 0 0.0001 4677
Out..
lnL = -709.304655
4678 lfun, 56136 eigenQcodon, 2006862 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -719.793755 S = -678.041737 -35.491717
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 71 patterns 21:50
did 20 / 71 patterns 21:50
did 30 / 71 patterns 21:51
did 40 / 71 patterns 21:51
did 50 / 71 patterns 21:51
did 60 / 71 patterns 21:51
did 70 / 71 patterns 21:51
did 71 / 71 patterns 21:51end of tree file.
Time used: 21:51
The loglikelihoods for models M1, M2, M7 and M8 are -712.952919 -712.952919 -709.304528 -709.304655 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
BtCoV_FO1A_F2_Hip_aba_GHA_2010_NA_ALK28783_1_2010_Ghana_Bat_Human_coronavirus_229E MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTVYGPIKNVYHI
HCoV_229E_Seattle_USA_SC1073_2016_NA_APT69885_1_2016_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
229E_human_USA_932_72_1993_E_AGT21362_1_1993_02_22_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
0349_NA_AFR79252_1_2010_Netherlands_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
N08_434B_NA_ARB07427_1_2016_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
HCoV_229E_Seattle_USA_SC399_2016_NA_ARB07394_1_2016_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
Camel229E_CoV_JC50_KSA_2014_NA_AOI28260_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTIYGPIKNVYHI
HCoV_229E_Seattle_USA_SC579_2016_NA_APT69851_1_2016_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
229E_UF_1_2016_NA_ARX11398_1_2016_11_23_USA_Unknown_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
HCoV_229E_USA_ACRI_0244_2017_E_QJY77957_1_2017_02_24_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
229E_E_AAG48595_1_NA_Thailand_Unknown_Human_coronavirus_229E MFLKLVDDHALVVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
BtCoV_KW2E_F151_Hip_cf_rub_GHA_2011_NA_ALK28777_1_2011_Ghana_Bat_Human_coronavirus_229E MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTVYGPIKNVYHI
HCoV_229E_USA_UAMS_DID_0108_2017_E_QJY77981_1_2017_01_27_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
HCoV_229E_Seattle_USA_SC1212_2016_NA_APT69871_1_2016_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
Camel229E_CoV_AC04_KSA_2014_NA_AOI28285_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTIYGPIKNVYHI
229E_Haiti_1_2016_NA_AST12966_1_2016_03_Haiti_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
BtCoV_AT1A_F1_Hip_aba_GHA_2010_NA_ALK28795_1_2010_Ghana_Bat_Human_coronavirus_229E MFLKLVDDHAIIVNVILWLIVLLVVLLICITLIKLIKLCFTCHMFCSRTVYDPVRNAYHI
229E_human_USA_933_50_1993_E_AGT21347_1_1993_03_18_USA_Human_Human_coronavirus_229E MFLKLVDDHALVVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
HCoV_229E_Seattle_USA_SC1143_2016_NA_APT69864_1_2016_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
HCoV_229E_BN1_GER_2015_NA_AOG74785_1_2015_Germany_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLIWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
HCoV_229E_Seattle_USA_SC2872_2015_NA_ARK08644_1_2015_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
Camel229E_CoV_JC52_KSA_2014_NA_AOI28277_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTIYGPIKNVYHI
HCoV_229E_Seattle_USA_SC677_2016_NA_APT69858_1_2016_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
HCoV_229E_Seattle_USA_SC9731_2016_NA_APT69878_1_2016_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
HCoV_229E_Seattle_USA_SC9724_2018_NA_QEO75987_1_2018_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
Camel229E_CoV_JC50_HUH7_KSA_2014_NA_AOI28292_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTIYGPIKNVYHI
BtKY229E_1_E_APD51501_1_2009_06_20_Kenya_Bat_Human_coronavirus_229E MFLKLVDDHALVVNVLLWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTIYGPIKNVYHI
CA08_1_2008_E_AFI49433_1_2008_USA_Camel_Human_coronavirus_229E MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTVYGPIKNVYHI
Camel229E_CoV_KCSP1_KEN_2015_NA_AOG74791_1_2015_Kenya_Camel_Human_coronavirus_229E MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTFYGPIKNVYHI
229E_human_USA_933_40_1993_E_AGT21369_1_1993_03_11_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHI
**********::***::* :**:*:**:***:**************.:*.*.*::*.***
BtCoV_FO1A_F2_Hip_aba_GHA_2010_NA_ALK28783_1_2010_Ghana_Bat_Human_coronavirus_229E YQSYMHIDPFPRQIIDV
HCoV_229E_Seattle_USA_SC1073_2016_NA_APT69885_1_2016_USA_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
229E_human_USA_932_72_1993_E_AGT21362_1_1993_02_22_USA_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
0349_NA_AFR79252_1_2010_Netherlands_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
N08_434B_NA_ARB07427_1_2016_USA_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
HCoV_229E_Seattle_USA_SC399_2016_NA_ARB07394_1_2016_USA_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
Camel229E_CoV_JC50_KSA_2014_NA_AOI28260_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E YQSYMHIDPFPRQIIDV
HCoV_229E_Seattle_USA_SC579_2016_NA_APT69851_1_2016_USA_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
229E_UF_1_2016_NA_ARX11398_1_2016_11_23_USA_Unknown_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
HCoV_229E_USA_ACRI_0244_2017_E_QJY77957_1_2017_02_24_USA_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
229E_E_AAG48595_1_NA_Thailand_Unknown_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
BtCoV_KW2E_F151_Hip_cf_rub_GHA_2011_NA_ALK28777_1_2011_Ghana_Bat_Human_coronavirus_229E YQSYMHIDPFPTQIIDV
HCoV_229E_USA_UAMS_DID_0108_2017_E_QJY77981_1_2017_01_27_USA_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
HCoV_229E_Seattle_USA_SC1212_2016_NA_APT69871_1_2016_USA_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
Camel229E_CoV_AC04_KSA_2014_NA_AOI28285_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E YQSYMHIDPFPRQIIDV
229E_Haiti_1_2016_NA_AST12966_1_2016_03_Haiti_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
BtCoV_AT1A_F1_Hip_aba_GHA_2010_NA_ALK28795_1_2010_Ghana_Bat_Human_coronavirus_229E YQSYMHIDPFPK-FPDV
229E_human_USA_933_50_1993_E_AGT21347_1_1993_03_18_USA_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
HCoV_229E_Seattle_USA_SC1143_2016_NA_APT69864_1_2016_USA_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
HCoV_229E_BN1_GER_2015_NA_AOG74785_1_2015_Germany_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
HCoV_229E_Seattle_USA_SC2872_2015_NA_ARK08644_1_2015_USA_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
Camel229E_CoV_JC52_KSA_2014_NA_AOI28277_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E YQSYMHIDPFPRQIIDV
HCoV_229E_Seattle_USA_SC677_2016_NA_APT69858_1_2016_USA_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
HCoV_229E_Seattle_USA_SC9731_2016_NA_APT69878_1_2016_USA_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
HCoV_229E_Seattle_USA_SC9724_2018_NA_QEO75987_1_2018_USA_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
Camel229E_CoV_JC50_HUH7_KSA_2014_NA_AOI28292_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E YQSYMHIDPFPRQIIDV
BtKY229E_1_E_APD51501_1_2009_06_20_Kenya_Bat_Human_coronavirus_229E YQSYMHIDPFPKQVISV
CA08_1_2008_E_AFI49433_1_2008_USA_Camel_Human_coronavirus_229E YQSYMHIDPFPRQIIDV
Camel229E_CoV_KCSP1_KEN_2015_NA_AOG74791_1_2015_Kenya_Camel_Human_coronavirus_229E YQSYMHIDPFPRQIIDV
229E_human_USA_933_40_1993_E_AGT21369_1_1993_03_11_USA_Human_Human_coronavirus_229E YQSYMHIDPFPKRVIDF
*********** . ..
>BtCoV_FO1A_F2_Hip_aba_GHA_2010_NA_ALK28783_1_2010_Ghana_Bat_Human_coronavirus_229E ATGTTTCTGAAGCTAGTGGATGATCATGCTTTAGTTGTAAATGTAATACTGTGGTGCGTAGTACTTATAGTACTTTTGCTAGTTTGTATTACTATTATCAAACTAATTAAGTTATGTTTTACATGCCATATGTTTTGTAATAAAACGGTTTATGGTCCTATTAAAAATGTATACCACATTTACCAATCATATATGCACATAGACCCTTTCCCTAGACAAATTATTGATGTC >HCoV_229E_Seattle_USA_SC1073_2016_NA_APT69885_1_2016_USA_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCATATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >229E_human_USA_932_72_1993_E_AGT21362_1_1993_02_22_USA_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCACATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >0349_NA_AFR79252_1_2010_Netherlands_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCATATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >N08_434B_NA_ARB07427_1_2016_USA_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCATATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >HCoV_229E_Seattle_USA_SC399_2016_NA_ARB07394_1_2016_USA_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCATATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >Camel229E_CoV_JC50_KSA_2014_NA_AOI28260_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E ATGTTTCTGAAGCTAGTGGATGATCATGCTTTAGTTGTAAATGTAATACTGTGGTGCGTAGTACTTATAGTACTTTTGCTAGTTTGTATTACAATTATTAAACTAATTAAATTATGTTTTACATGCCATATGTTTTGTAATAAAACGATTTATGGTCCCATTAAAAATGTGTATCACATTTACCAATCATACATGCACATAGACCCTTTCCCTAGACAAATTATTGATGTC >HCoV_229E_Seattle_USA_SC579_2016_NA_APT69851_1_2016_USA_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGCAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCATATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >229E_UF_1_2016_NA_ARX11398_1_2016_11_23_USA_Unknown_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCATATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >HCoV_229E_USA_ACRI_0244_2017_E_QJY77957_1_2017_02_24_USA_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGCAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCATATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >229E_E_AAG48595_1_NA_Thailand_Unknown_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGGTTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCACATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >BtCoV_KW2E_F151_Hip_cf_rub_GHA_2011_NA_ALK28777_1_2011_Ghana_Bat_Human_coronavirus_229E ATGTTTCTGAAGCTAGTGGATGATCATGCTTTAGTTGTAAATGTAATACTGTGGTGCGTAGTACTTATAGTACTCTTGCTAGTTTGTATTACAATTATTAAATTAATTAAGTTATGTTTTACATGCCATATGTTTTGTAATAAAACGGTTTATGGTCCCATTAAAAATGTATATCACATTTACCAATCATATATGCACATAGACCCTTTCCCTACACAAATTATTGATGTC >HCoV_229E_USA_UAMS_DID_0108_2017_E_QJY77981_1_2017_01_27_USA_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCATATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >HCoV_229E_Seattle_USA_SC1212_2016_NA_APT69871_1_2016_USA_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCATATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >Camel229E_CoV_AC04_KSA_2014_NA_AOI28285_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E ATGTTTCTGAAGCTAGTGGATGATCATGCTTTAGTTGTAAATGTAATACTGTGGTGCGTAGTACTTATAGTACTTTTGCTAGTTTGTATTACAATTATTAAACTAATTAAATTATGTTTTACATGCCATATGTTTTGTAATAAAACGATTTATGGTCCCATTAAAAATGTGTATCACATTTACCAATCATACATGCACATAGACCCTTTCCCCAGACAAATTATTGATGTC >229E_Haiti_1_2016_NA_AST12966_1_2016_03_Haiti_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCATATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >BtCoV_AT1A_F1_Hip_aba_GHA_2010_NA_ALK28795_1_2010_Ghana_Bat_Human_coronavirus_229E ATGTTCCTGAAATTAGTGGATGATCATGCTATCATTGTTAATGTTATACTGTGGTTAATAGTACTTCTTGTAGTGCTGTTGATATGCATAACATTAATTAAACTAATCAAACTCTGCTTTACGTGTCATATGTTCTGTTCTAGGACAGTTTATGACCCAGTTCGCAATGCTTATCACATTTACCAATCTTATATGCACATAGACCCTTTTCCCAAA---TTTCCTGATGTC >229E_human_USA_933_50_1993_E_AGT21347_1_1993_03_18_USA_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGGTTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCACATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >HCoV_229E_Seattle_USA_SC1143_2016_NA_APT69864_1_2016_USA_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCATATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >HCoV_229E_BN1_GER_2015_NA_AOG74785_1_2015_Germany_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTAATCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCATATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >HCoV_229E_Seattle_USA_SC2872_2015_NA_ARK08644_1_2015_USA_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGCAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCATATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >Camel229E_CoV_JC52_KSA_2014_NA_AOI28277_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E ATGTTTCTGAAGCTAGTGGATGATCATGCTTTAGTTGTAAATGTAATACTGTGGTGCGTAGTACTTATAGTACTTTTGCTAGTTTGTATTACAATTATTAAACTAATTAAATTATGTTTTACATGCCATATGTTTTGTAATAAAACGATTTATGGTCCCATTAAAAATGTGTATCACATTTACCAATCATACATGCACATAGACCCTTTCCCTAGACAAATTATTGATGTC >HCoV_229E_Seattle_USA_SC677_2016_NA_APT69858_1_2016_USA_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCATATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >HCoV_229E_Seattle_USA_SC9731_2016_NA_APT69878_1_2016_USA_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATCAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCATATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >HCoV_229E_Seattle_USA_SC9724_2018_NA_QEO75987_1_2018_USA_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCATATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC >Camel229E_CoV_JC50_HUH7_KSA_2014_NA_AOI28292_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E ATGTTTCTGAAGCTAGTGGATGATCATGCTTTAGTTGTAAATGTAATACTGTGGTGCGTAGTACTTATAGTACTTTTGCTAGTTTGTATTACAATTATTAAACTAATTAAATTATGTTTTACATGCCATATGTTTTGTAATAAAACGATTTATGGTCCCATTAAAAATGTGTATCACATTTACCAATCATACATGCACATAGACCCTTTCCCTAGACAAATTATTGATGTC >BtKY229E_1_E_APD51501_1_2009_06_20_Kenya_Bat_Human_coronavirus_229E ATGTTCCTGAAGCTAGTTGATGATCACGCTTTGGTTGTTAATGTACTACTTTGGTGTGTGGTGCTTATAGTACTACTACTAGTATGTATTACAATAATAAAATTAATTAAGCTATGTTTTACTTGCCATATGTTTTGTAATAAAACAATTTATGGTCCTATTAAAAATGTATATCACATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACAAGTTATAAGTGTC >CA08_1_2008_E_AFI49433_1_2008_USA_Camel_Human_coronavirus_229E ATGTTTCTGAAGCTAGTGGATGATCATGCTTTAGTTGTAAATGTAATACTGTGGTGCGTAGTACTTATAGTACTTTTGCTAGTTTGTATTACAATTATTAAACTAATTAAATTATGTTTTACATGCCATATGTTTTGTAATAAAACGGTTTATGGTCCCATTAAAAATGTGTATCACATTTACCAATCATACATGCACATAGACCCTTTCCCTAGACAAATTATTGATGTC >Camel229E_CoV_KCSP1_KEN_2015_NA_AOG74791_1_2015_Kenya_Camel_Human_coronavirus_229E ATGTTTCTGAAGCTAGTGGATGATCATGCTTTAGTTGTAAATGTAATACTGTGGTGCGTAGTACTTATAGTACTTTTGCTAGTTTGTATTACAATTATTAAACTAATTAAATTATGTTTTACATGCCATATGTTTTGTAATAAAACGTTTTATGGTCCCATTAAAAATGTATATCATATTTACCAATCATACATGCACATAGACCCTTTCCCTAGACAAATTATTGATGTT >229E_human_USA_933_40_1993_E_AGT21369_1_1993_03_11_USA_Human_Human_coronavirus_229E ATGTTCCTTAAGCTAGTGGATGATCATGCTTTGATTGTTAATGTACTACTCTGGTGTGTGGTGCTTATAGTGATACTACTAGTGTGTATTACAATAATTAAACTAATTAAGCTTTGTTTCACTTGCCATATGTTTTGTAATAGAACAGTTTATGGCCCCATTAAAAATGTGTACCACATTTACCAATCATATATGCACATAGACCCTTTCCCTAAACGAGTTATTGATTTC
>BtCoV_FO1A_F2_Hip_aba_GHA_2010_NA_ALK28783_1_2010_Ghana_Bat_Human_coronavirus_229E MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTVYGPIKNVYHIYQSYMHIDPFPRQIIDV >HCoV_229E_Seattle_USA_SC1073_2016_NA_APT69885_1_2016_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >229E_human_USA_932_72_1993_E_AGT21362_1_1993_02_22_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >0349_NA_AFR79252_1_2010_Netherlands_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >N08_434B_NA_ARB07427_1_2016_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >HCoV_229E_Seattle_USA_SC399_2016_NA_ARB07394_1_2016_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >Camel229E_CoV_JC50_KSA_2014_NA_AOI28260_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTIYGPIKNVYHIYQSYMHIDPFPRQIIDV >HCoV_229E_Seattle_USA_SC579_2016_NA_APT69851_1_2016_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >229E_UF_1_2016_NA_ARX11398_1_2016_11_23_USA_Unknown_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >HCoV_229E_USA_ACRI_0244_2017_E_QJY77957_1_2017_02_24_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >229E_E_AAG48595_1_NA_Thailand_Unknown_Human_coronavirus_229E MFLKLVDDHALVVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >BtCoV_KW2E_F151_Hip_cf_rub_GHA_2011_NA_ALK28777_1_2011_Ghana_Bat_Human_coronavirus_229E MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTVYGPIKNVYHIYQSYMHIDPFPTQIIDV >HCoV_229E_USA_UAMS_DID_0108_2017_E_QJY77981_1_2017_01_27_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >HCoV_229E_Seattle_USA_SC1212_2016_NA_APT69871_1_2016_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >Camel229E_CoV_AC04_KSA_2014_NA_AOI28285_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTIYGPIKNVYHIYQSYMHIDPFPRQIIDV >229E_Haiti_1_2016_NA_AST12966_1_2016_03_Haiti_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >BtCoV_AT1A_F1_Hip_aba_GHA_2010_NA_ALK28795_1_2010_Ghana_Bat_Human_coronavirus_229E MFLKLVDDHAIIVNVILWLIVLLVVLLICITLIKLIKLCFTCHMFCSRTVYDPVRNAYHIYQSYMHIDPFPK-FPDV >229E_human_USA_933_50_1993_E_AGT21347_1_1993_03_18_USA_Human_Human_coronavirus_229E MFLKLVDDHALVVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >HCoV_229E_Seattle_USA_SC1143_2016_NA_APT69864_1_2016_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >HCoV_229E_BN1_GER_2015_NA_AOG74785_1_2015_Germany_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLIWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >HCoV_229E_Seattle_USA_SC2872_2015_NA_ARK08644_1_2015_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >Camel229E_CoV_JC52_KSA_2014_NA_AOI28277_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTIYGPIKNVYHIYQSYMHIDPFPRQIIDV >HCoV_229E_Seattle_USA_SC677_2016_NA_APT69858_1_2016_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >HCoV_229E_Seattle_USA_SC9731_2016_NA_APT69878_1_2016_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >HCoV_229E_Seattle_USA_SC9724_2018_NA_QEO75987_1_2018_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF >Camel229E_CoV_JC50_HUH7_KSA_2014_NA_AOI28292_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTIYGPIKNVYHIYQSYMHIDPFPRQIIDV >BtKY229E_1_E_APD51501_1_2009_06_20_Kenya_Bat_Human_coronavirus_229E MFLKLVDDHALVVNVLLWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTIYGPIKNVYHIYQSYMHIDPFPKQVISV >CA08_1_2008_E_AFI49433_1_2008_USA_Camel_Human_coronavirus_229E MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTVYGPIKNVYHIYQSYMHIDPFPRQIIDV >Camel229E_CoV_KCSP1_KEN_2015_NA_AOG74791_1_2015_Kenya_Camel_Human_coronavirus_229E MFLKLVDDHALVVNVILWCVVLIVLLLVCITIIKLIKLCFTCHMFCNKTFYGPIKNVYHIYQSYMHIDPFPRQIIDV >229E_human_USA_933_40_1993_E_AGT21369_1_1993_03_11_USA_Human_Human_coronavirus_229E MFLKLVDDHALIVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDPFPKRVIDF
Reading sequence file /data//pss_subsets/229E_human_USA_932_72_1993_E_AGT21362_1_1993_02_22_USA_Human_Human_coronavirus_229E.result/original_alignment/codeml/fasta/229E_human_USA_932_72_1993_E_AGT21362_1_1993_02_22_USA_Human_Human_coronavirus_229E.result.1
Found 30 sequences of length 231
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 7.9%
Found 39 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0%100.0%
Using a window size of 80 with k as 14
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 51 polymorphic sites
**p-Value(s)**
----------
NSS: 2.50e-02 (1000 permutations)
Max Chi^2: 7.65e-01 (1000 permutations)
PHI (Permutation): 1.96e-01 (1000 permutations)
PHI (Normal): 2.04e-01
#NEXUS
[ID: 6891716140]
begin taxa;
dimensions ntax=30;
taxlabels
0349_NA_AFR79252_1_2010_Netherlands_Human_Human_coronavirus_229E
BtCoV_KW2E_F151_Hip_cf_rub_GHA_2011_NA_ALK28777_1_2011_Ghana_Bat_Human_coronavirus_229E
BtKY229E_1_E_APD51501_1_2009_06_20_Kenya_Bat_Human_coronavirus_229E
Camel229E_CoV_AC04_KSA_2014_NA_AOI28285_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E
CA08_1_2008_E_AFI49433_1_2008_USA_Camel_Human_coronavirus_229E
Camel229E_CoV_JC50_HUH7_KSA_2014_NA_AOI28292_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E
Camel229E_CoV_JC50_KSA_2014_NA_AOI28260_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E
Camel229E_CoV_JC52_KSA_2014_NA_AOI28277_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E
229E_E_AAG48595_1_NA_Thailand_Unknown_Human_coronavirus_229E
Camel229E_CoV_KCSP1_KEN_2015_NA_AOG74791_1_2015_Kenya_Camel_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC1073_2016_NA_APT69885_1_2016_USA_Human_Human_coronavirus_229E
HCoV_229E_BN1_GER_2015_NA_AOG74785_1_2015_Germany_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC1143_2016_NA_APT69864_1_2016_USA_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC1212_2016_NA_APT69871_1_2016_USA_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC2872_2015_NA_ARK08644_1_2015_USA_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC399_2016_NA_ARB07394_1_2016_USA_Human_Human_coronavirus_229E
229E_Haiti_1_2016_NA_AST12966_1_2016_03_Haiti_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC579_2016_NA_APT69851_1_2016_USA_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC677_2016_NA_APT69858_1_2016_USA_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC9731_2016_NA_APT69878_1_2016_USA_Human_Human_coronavirus_229E
HCoV_229E_Seattle_USA_SC9724_2018_NA_QEO75987_1_2018_USA_Human_Human_coronavirus_229E
HCoV_229E_USA_ACRI_0244_2017_E_QJY77957_1_2017_02_24_USA_Human_Human_coronavirus_229E
HCoV_229E_USA_UAMS_DID_0108_2017_E_QJY77981_1_2017_01_27_USA_Human_Human_coronavirus_229E
229E_UF_1_2016_NA_ARX11398_1_2016_11_23_USA_Unknown_Human_coronavirus_229E
N08_434B_NA_ARB07427_1_2016_USA_Human_Human_coronavirus_229E
229E_human_USA_932_72_1993_E_AGT21362_1_1993_02_22_USA_Human_Human_coronavirus_229E
229E_human_USA_933_50_1993_E_AGT21347_1_1993_03_18_USA_Human_Human_coronavirus_229E
229E_human_USA_933_40_1993_E_AGT21369_1_1993_03_11_USA_Human_Human_coronavirus_229E
BtCoV_AT1A_F1_Hip_aba_GHA_2010_NA_ALK28795_1_2010_Ghana_Bat_Human_coronavirus_229E
BtCoV_FO1A_F2_Hip_aba_GHA_2010_NA_ALK28783_1_2010_Ghana_Bat_Human_coronavirus_229E
;
end;
begin trees;
translate
1 0349_NA_AFR79252_1_2010_Netherlands_Human_Human_coronavirus_229E,
2 BtCoV_KW2E_F151_Hip_cf_rub_GHA_2011_NA_ALK28777_1_2011_Ghana_Bat_Human_coronavirus_229E,
3 BtKY229E_1_E_APD51501_1_2009_06_20_Kenya_Bat_Human_coronavirus_229E,
4 Camel229E_CoV_AC04_KSA_2014_NA_AOI28285_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E,
5 CA08_1_2008_E_AFI49433_1_2008_USA_Camel_Human_coronavirus_229E,
6 Camel229E_CoV_JC50_HUH7_KSA_2014_NA_AOI28292_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E,
7 Camel229E_CoV_JC50_KSA_2014_NA_AOI28260_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E,
8 Camel229E_CoV_JC52_KSA_2014_NA_AOI28277_1_2014_Saudi_Arabia_Camel_Human_coronavirus_229E,
9 229E_E_AAG48595_1_NA_Thailand_Unknown_Human_coronavirus_229E,
10 Camel229E_CoV_KCSP1_KEN_2015_NA_AOG74791_1_2015_Kenya_Camel_Human_coronavirus_229E,
11 HCoV_229E_Seattle_USA_SC1073_2016_NA_APT69885_1_2016_USA_Human_Human_coronavirus_229E,
12 HCoV_229E_BN1_GER_2015_NA_AOG74785_1_2015_Germany_Human_Human_coronavirus_229E,
13 HCoV_229E_Seattle_USA_SC1143_2016_NA_APT69864_1_2016_USA_Human_Human_coronavirus_229E,
14 HCoV_229E_Seattle_USA_SC1212_2016_NA_APT69871_1_2016_USA_Human_Human_coronavirus_229E,
15 HCoV_229E_Seattle_USA_SC2872_2015_NA_ARK08644_1_2015_USA_Human_Human_coronavirus_229E,
16 HCoV_229E_Seattle_USA_SC399_2016_NA_ARB07394_1_2016_USA_Human_Human_coronavirus_229E,
17 229E_Haiti_1_2016_NA_AST12966_1_2016_03_Haiti_Human_Human_coronavirus_229E,
18 HCoV_229E_Seattle_USA_SC579_2016_NA_APT69851_1_2016_USA_Human_Human_coronavirus_229E,
19 HCoV_229E_Seattle_USA_SC677_2016_NA_APT69858_1_2016_USA_Human_Human_coronavirus_229E,
20 HCoV_229E_Seattle_USA_SC9731_2016_NA_APT69878_1_2016_USA_Human_Human_coronavirus_229E,
21 HCoV_229E_Seattle_USA_SC9724_2018_NA_QEO75987_1_2018_USA_Human_Human_coronavirus_229E,
22 HCoV_229E_USA_ACRI_0244_2017_E_QJY77957_1_2017_02_24_USA_Human_Human_coronavirus_229E,
23 HCoV_229E_USA_UAMS_DID_0108_2017_E_QJY77981_1_2017_01_27_USA_Human_Human_coronavirus_229E,
24 229E_UF_1_2016_NA_ARX11398_1_2016_11_23_USA_Unknown_Human_coronavirus_229E,
25 N08_434B_NA_ARB07427_1_2016_USA_Human_Human_coronavirus_229E,
26 229E_human_USA_932_72_1993_E_AGT21362_1_1993_02_22_USA_Human_Human_coronavirus_229E,
27 229E_human_USA_933_50_1993_E_AGT21347_1_1993_03_18_USA_Human_Human_coronavirus_229E,
28 229E_human_USA_933_40_1993_E_AGT21369_1_1993_03_11_USA_Human_Human_coronavirus_229E,
29 BtCoV_AT1A_F1_Hip_aba_GHA_2010_NA_ALK28795_1_2010_Ghana_Bat_Human_coronavirus_229E,
30 BtCoV_FO1A_F2_Hip_aba_GHA_2010_NA_ALK28783_1_2010_Ghana_Bat_Human_coronavirus_229E
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:2.264233e-03,11:2.354407e-03,12:5.674050e-03,13:2.368765e-03,14:2.229973e-03,16:2.436790e-03,17:2.424317e-03,19:2.283680e-03,20:5.460785e-03,21:2.198164e-03,23:2.336445e-03,24:2.400861e-03,25:2.267526e-03,(15:2.452465e-03,18:2.332066e-03,22:2.311241e-03)0.915:5.676287e-03,(((((2:1.161098e-02,(((4:5.946335e-03,6:2.340074e-03,7:2.387636e-03,8:2.457026e-03)0.528:5.095242e-03,5:2.990410e-03)0.521:5.900402e-03,10:1.453677e-02)0.977:1.089785e-02,30:1.601744e-02)0.996:4.648005e-02,29:1.969754e-01)0.947:3.077276e-02,3:4.131431e-02)1.000:4.511561e-02,9:2.360837e-03,27:2.340831e-03)0.850:5.547793e-03,26:2.356794e-03,28:2.517397e-03)0.864:5.833667e-03);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:2.264233e-03,11:2.354407e-03,12:5.674050e-03,13:2.368765e-03,14:2.229973e-03,16:2.436790e-03,17:2.424317e-03,19:2.283680e-03,20:5.460785e-03,21:2.198164e-03,23:2.336445e-03,24:2.400861e-03,25:2.267526e-03,(15:2.452465e-03,18:2.332066e-03,22:2.311241e-03):5.676287e-03,(((((2:1.161098e-02,(((4:5.946335e-03,6:2.340074e-03,7:2.387636e-03,8:2.457026e-03):5.095242e-03,5:2.990410e-03):5.900402e-03,10:1.453677e-02):1.089785e-02,30:1.601744e-02):4.648005e-02,29:1.969754e-01):3.077276e-02,3:4.131431e-02):4.511561e-02,9:2.360837e-03,27:2.340831e-03):5.547793e-03,26:2.356794e-03,28:2.517397e-03):5.833667e-03);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -797.17 -839.79
2 -799.19 -834.06
--------------------------------------
TOTAL -797.74 -839.10
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.625090 0.009972 0.450834 0.826889 0.616595 1118.23 1141.12 1.000
r(A<->C){all} 0.118538 0.001743 0.042614 0.201875 0.115312 561.90 580.62 1.000
r(A<->G){all} 0.349618 0.003786 0.234982 0.477647 0.348056 442.23 492.09 1.001
r(A<->T){all} 0.082693 0.000633 0.039826 0.135408 0.079446 695.58 707.90 1.000
r(C<->G){all} 0.057952 0.001396 0.000984 0.128877 0.051685 317.78 385.54 1.001
r(C<->T){all} 0.334969 0.003871 0.223381 0.463935 0.332549 419.55 428.03 1.000
r(G<->T){all} 0.056231 0.000703 0.011966 0.110081 0.052500 625.52 646.37 1.001
pi(A){all} 0.290273 0.000699 0.237966 0.340017 0.290677 885.86 953.84 1.000
pi(C){all} 0.172348 0.000458 0.130792 0.213566 0.171984 937.67 971.73 1.000
pi(G){all} 0.154383 0.000430 0.115777 0.197246 0.153665 883.85 956.49 1.001
pi(T){all} 0.382995 0.000873 0.324079 0.438182 0.383014 907.27 942.53 1.000
alpha{1,2} 0.581751 0.172991 0.159159 1.327740 0.468631 912.88 933.08 1.000
alpha{3} 2.606183 1.609897 0.698327 5.058081 2.335589 1365.20 1367.83 1.000
pinvar{all} 0.122708 0.007913 0.000063 0.290919 0.104895 965.80 1035.83 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/229E_human_USA_932_72_1993_E_AGT21362_1_1993_02_22_USA_Human_Human_coronavirus_229E.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 30 ls = 76
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 3 1 1 1 1 1 | Ser TCT 0 0 0 0 0 0 | Tyr TAT 2 2 2 2 2 2 | Cys TGT 3 4 4 4 4 4
TTC 1 4 4 4 4 4 | TCC 0 0 0 0 0 0 | TAC 2 2 2 2 2 2 | TGC 2 1 1 1 1 1
Leu TTA 2 0 0 0 0 0 | TCA 1 1 1 1 1 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 1 1 1 1 1 1 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 2 3 3 3 3 3 | Pro CCT 3 2 2 2 2 2 | His CAT 2 3 2 3 3 3 | Arg CGT 0 0 0 0 0 0
CTC 0 1 1 1 1 1 | CCC 0 1 1 1 1 1 | CAC 2 1 2 1 1 1 | CGC 0 0 0 0 0 0
CTA 3 5 5 5 5 5 | CCA 0 0 0 0 0 0 | Gln CAA 1 1 1 1 1 1 | CGA 0 0 0 0 0 0
CTG 2 0 0 0 0 0 | CCG 0 0 0 0 0 0 | CAG 0 0 0 0 0 0 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 7 7 7 7 7 7 | Thr ACT 1 1 1 1 1 1 | Asn AAT 3 3 3 3 3 3 | Ser AGT 0 0 0 0 0 0
ATC 1 0 0 0 0 0 | ACC 0 0 0 0 0 0 | AAC 0 0 0 0 0 0 | AGC 0 0 0 0 0 0
ATA 3 4 4 4 4 4 | ACA 1 2 2 2 2 2 | Lys AAA 3 3 3 3 3 3 | Arg AGA 1 1 1 1 1 1
Met ATG 3 3 3 3 3 3 | ACG 1 0 0 0 0 0 | AAG 2 2 2 2 2 2 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 3 3 3 3 3 3 | Ala GCT 1 1 1 1 1 1 | Asp GAT 3 3 3 3 3 3 | Gly GGT 1 0 0 0 0 0
GTC 1 0 0 0 0 0 | GCC 0 0 0 0 0 0 | GAC 1 1 1 1 1 1 | GGC 0 1 1 1 1 1
GTA 6 1 1 1 1 1 | GCA 0 0 0 0 0 0 | Glu GAA 0 0 0 0 0 0 | GGA 0 0 0 0 0 0
GTG 1 6 6 6 6 6 | GCG 0 0 0 0 0 0 | GAG 0 0 0 0 0 0 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 3 1 1 1 1 3 | Ser TCT 0 0 0 0 0 0 | Tyr TAT 2 2 2 2 2 3 | Cys TGT 3 3 4 3 4 3
TTC 1 4 4 4 4 1 | TCC 0 0 0 0 0 0 | TAC 2 2 2 2 2 1 | TGC 2 2 1 2 1 2
Leu TTA 2 0 0 0 0 3 | TCA 1 1 1 1 1 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 1 1 1 1 1 1 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 2 3 3 3 3 1 | Pro CCT 2 2 2 2 2 2 | His CAT 2 3 3 3 2 2 | Arg CGT 0 0 0 0 0 0
CTC 0 1 1 1 1 1 | CCC 1 1 1 1 1 1 | CAC 2 1 1 1 2 2 | CGC 0 0 0 0 0 0
CTA 3 5 5 5 5 2 | CCA 0 0 0 0 0 0 | Gln CAA 1 1 1 1 1 1 | CGA 0 0 0 0 0 0
CTG 2 0 0 0 0 2 | CCG 0 0 0 0 0 0 | CAG 0 0 0 0 0 0 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 9 7 7 7 6 8 | Thr ACT 0 1 1 1 1 0 | Asn AAT 3 3 3 3 3 3 | Ser AGT 0 0 0 0 0 0
ATC 0 0 0 0 0 0 | ACC 0 0 0 0 0 0 | AAC 0 0 0 0 0 0 | AGC 0 0 0 0 0 0
ATA 3 4 4 4 4 3 | ACA 2 2 2 2 2 3 | Lys AAA 4 3 3 3 3 3 | Arg AGA 1 1 1 1 1 0
Met ATG 3 3 3 3 3 3 | ACG 1 0 0 0 0 1 | AAG 1 2 2 2 2 2 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 2 3 3 3 4 3 | Ala GCT 1 1 1 1 1 1 | Asp GAT 3 3 3 3 3 3 | Gly GGT 1 0 0 0 0 1
GTC 1 0 0 0 0 1 | GCC 0 0 0 0 0 0 | GAC 1 1 1 1 1 1 | GGC 0 1 1 1 1 0
GTA 5 1 1 1 1 6 | GCA 0 0 0 0 0 0 | Glu GAA 0 0 0 0 0 0 | GGA 0 0 0 0 0 0
GTG 2 6 6 6 6 1 | GCG 0 0 0 0 0 0 | GAG 0 0 0 0 0 0 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 1 1 3 1 3 1 | Ser TCT 0 0 0 0 2 0 | Tyr TAT 2 2 2 2 3 2 | Cys TGT 4 4 3 4 2 4
TTC 4 4 1 4 2 4 | TCC 0 0 0 0 0 0 | TAC 2 2 2 2 1 2 | TGC 1 1 2 1 2 1
Leu TTA 0 0 2 0 3 0 | TCA 1 1 1 1 0 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 1 1 1 1 1 1 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 3 3 2 3 2 3 | Pro CCT 2 2 1 2 2 2 | His CAT 3 3 2 3 2 2 | Arg CGT 0 0 0 0 0 0
CTC 1 1 0 1 1 1 | CCC 1 1 2 1 1 1 | CAC 1 1 2 1 2 2 | CGC 0 0 0 0 1 0
CTA 5 5 3 5 1 5 | CCA 0 0 0 0 1 0 | Gln CAA 1 1 1 1 1 1 | CGA 0 0 0 0 0 0
CTG 0 0 2 0 3 0 | CCG 0 0 0 0 0 0 | CAG 0 0 0 0 0 0 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 7 7 9 7 3 6 | Thr ACT 1 1 0 1 0 1 | Asn AAT 3 3 3 3 2 3 | Ser AGT 0 0 0 0 0 0
ATC 0 0 0 0 2 0 | ACC 0 0 0 0 0 0 | AAC 0 0 0 0 0 0 | AGC 0 0 0 0 0 0
ATA 4 4 3 4 5 4 | ACA 2 2 2 2 2 2 | Lys AAA 3 3 4 3 4 3 | Arg AGA 1 1 1 1 0 1
Met ATG 3 3 3 3 3 3 | ACG 0 0 1 0 1 0 | AAG 2 2 1 2 0 2 | AGG 0 0 0 0 1 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 3 3 2 3 4 4 | Ala GCT 1 1 1 1 2 1 | Asp GAT 3 3 3 3 3 3 | Gly GGT 0 0 1 0 0 0
GTC 0 0 1 0 1 0 | GCC 0 0 0 0 0 0 | GAC 1 1 1 1 2 1 | GGC 1 1 0 1 0 1
GTA 1 1 5 1 2 1 | GCA 0 0 0 0 0 0 | Glu GAA 0 0 0 0 0 0 | GGA 0 0 0 0 0 0
GTG 6 6 2 6 2 6 | GCG 0 0 0 0 0 0 | GAG 0 0 0 0 0 0 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 1 1 1 3 1 1 | Ser TCT 0 0 0 0 0 0 | Tyr TAT 2 2 2 2 2 2 | Cys TGT 4 4 3 3 4 4
TTC 4 4 4 1 4 4 | TCC 0 0 0 0 0 0 | TAC 2 2 2 2 2 2 | TGC 1 1 2 2 1 1
Leu TTA 0 0 0 2 0 0 | TCA 1 1 1 1 1 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 1 1 1 1 1 1 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 3 3 3 2 3 3 | Pro CCT 2 2 2 2 2 2 | His CAT 3 3 3 2 3 3 | Arg CGT 0 0 0 0 0 0
CTC 1 0 1 0 1 1 | CCC 1 1 1 1 1 1 | CAC 1 1 1 2 1 1 | CGC 0 0 0 0 0 0
CTA 5 5 5 3 5 5 | CCA 0 0 0 0 0 0 | Gln CAA 1 1 1 1 1 1 | CGA 0 0 0 0 0 0
CTG 0 0 0 2 0 0 | CCG 0 0 0 0 0 0 | CAG 0 0 0 0 0 0 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 7 7 7 9 7 6 | Thr ACT 1 1 1 0 1 1 | Asn AAT 3 3 3 3 3 3 | Ser AGT 0 0 0 0 0 0
ATC 0 1 0 0 0 1 | ACC 0 0 0 0 0 0 | AAC 0 0 0 0 0 0 | AGC 0 0 0 0 0 0
ATA 4 4 4 3 4 4 | ACA 2 2 2 2 2 2 | Lys AAA 3 3 3 4 3 3 | Arg AGA 1 1 1 1 1 1
Met ATG 3 3 3 3 3 3 | ACG 0 0 0 1 0 0 | AAG 2 2 2 1 2 2 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 3 3 3 2 3 3 | Ala GCT 1 1 1 1 1 1 | Asp GAT 3 3 3 3 3 3 | Gly GGT 0 0 0 1 0 0
GTC 0 0 0 1 0 0 | GCC 0 0 0 0 0 0 | GAC 1 1 1 1 1 1 | GGC 1 1 1 0 1 1
GTA 1 1 1 5 1 1 | GCA 0 0 0 0 0 0 | Glu GAA 0 0 0 0 0 0 | GGA 0 0 0 0 0 0
GTG 6 6 6 2 6 6 | GCG 0 0 0 0 0 0 | GAG 0 0 0 0 0 0 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 1 3 2 3 4 1 | Ser TCT 0 0 0 0 0 0 | Tyr TAT 2 2 3 2 2 2 | Cys TGT 4 3 4 3 3 4
TTC 4 1 2 1 1 4 | TCC 0 0 0 0 0 0 | TAC 2 2 1 2 2 2 | TGC 1 2 1 2 2 1
Leu TTA 0 2 1 2 2 0 | TCA 1 1 1 1 1 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 1 1 1 1 1 1 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 3 2 2 2 2 3 | Pro CCT 2 2 3 2 2 2 | His CAT 3 2 1 2 3 2 | Arg CGT 0 0 0 0 0 0
CTC 1 0 0 0 0 1 | CCC 1 1 0 1 1 1 | CAC 1 2 3 2 1 2 | CGC 0 0 0 0 0 0
CTA 5 3 6 3 3 5 | CCA 0 0 0 0 0 0 | Gln CAA 1 1 1 1 1 1 | CGA 0 0 0 0 0 0
CTG 0 2 1 2 2 0 | CCG 0 0 0 0 0 0 | CAG 0 0 0 0 0 0 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 7 9 5 8 8 7 | Thr ACT 1 0 1 0 0 1 | Asn AAT 3 3 3 3 3 3 | Ser AGT 0 0 1 0 0 0
ATC 0 0 0 0 0 0 | ACC 0 0 0 0 0 0 | AAC 0 0 0 0 0 0 | AGC 0 0 0 0 0 0
ATA 4 3 5 3 3 4 | ACA 2 2 2 2 2 2 | Lys AAA 3 4 4 4 4 3 | Arg AGA 1 1 0 1 1 1
Met ATG 3 3 3 3 3 3 | ACG 0 1 0 1 1 0 | AAG 2 1 2 1 1 2 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 3 2 4 3 3 3 | Ala GCT 1 1 1 1 1 1 | Asp GAT 3 3 2 3 3 3 | Gly GGT 0 1 1 1 1 0
GTC 0 1 1 1 0 0 | GCC 0 0 0 0 0 0 | GAC 1 1 1 1 1 1 | GGC 1 0 0 0 0 1
GTA 1 5 4 5 6 1 | GCA 0 0 0 0 0 0 | Glu GAA 0 0 0 0 0 0 | GGA 0 0 0 0 0 0
GTG 6 2 2 2 1 6 | GCG 0 0 0 0 0 0 | GAG 0 0 0 0 0 0 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C9
position 1: T:0.23684 C:0.19737 A:0.34211 G:0.22368
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.44737 C:0.13158 A:0.27632 G:0.14474
Average T:0.39912 C:0.14474 A:0.29825 G:0.15789
#2: C21
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.15789 A:0.23684 G:0.17105
Average T:0.39035 C:0.16228 A:0.28509 G:0.16228
#3: C5
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.42105 C:0.17105 A:0.23684 G:0.17105
Average T:0.38596 C:0.16667 A:0.28509 G:0.16228
#4: C1
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.15789 A:0.23684 G:0.17105
Average T:0.39035 C:0.16228 A:0.28509 G:0.16228
#5: C42
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.15789 A:0.23684 G:0.17105
Average T:0.39035 C:0.16228 A:0.28509 G:0.16228
#6: C29
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.15789 A:0.23684 G:0.17105
Average T:0.39035 C:0.16228 A:0.28509 G:0.16228
#7: C18
position 1: T:0.23684 C:0.19737 A:0.35526 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.13158 A:0.28947 G:0.14474
Average T:0.39474 C:0.14474 A:0.30702 G:0.15351
#8: C31
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.42105 C:0.17105 A:0.23684 G:0.17105
Average T:0.38596 C:0.16667 A:0.28509 G:0.16228
#9: C4
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.15789 A:0.23684 G:0.17105
Average T:0.39035 C:0.16228 A:0.28509 G:0.16228
#10: C36
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.42105 C:0.17105 A:0.23684 G:0.17105
Average T:0.38596 C:0.16667 A:0.28509 G:0.16228
#11: C2
position 1: T:0.22368 C:0.22368 A:0.32895 G:0.22368
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.42105 C:0.17105 A:0.23684 G:0.17105
Average T:0.38596 C:0.16667 A:0.28070 G:0.16667
#12: C11
position 1: T:0.25000 C:0.18421 A:0.34211 G:0.22368
position 2: T:0.51316 C:0.11842 A:0.27632 G:0.09211
position 3: T:0.43421 C:0.13158 A:0.28947 G:0.14474
Average T:0.39912 C:0.14474 A:0.30263 G:0.15351
#13: C39
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.15789 A:0.23684 G:0.17105
Average T:0.39035 C:0.16228 A:0.28509 G:0.16228
#14: C25
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.15789 A:0.23684 G:0.17105
Average T:0.39035 C:0.16228 A:0.28509 G:0.16228
#15: C14
position 1: T:0.23684 C:0.19737 A:0.35526 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.42105 C:0.14474 A:0.28947 G:0.14474
Average T:0.39035 C:0.14912 A:0.30702 G:0.15351
#16: C3
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.15789 A:0.23684 G:0.17105
Average T:0.39035 C:0.16228 A:0.28509 G:0.16228
#17: C8
position 1: T:0.26316 C:0.22368 A:0.30263 G:0.21053
position 2: T:0.50000 C:0.14474 A:0.26316 G:0.09211
position 3: T:0.39474 C:0.19737 A:0.25000 G:0.15789
Average T:0.38596 C:0.18860 A:0.27193 G:0.15351
#18: C6
position 1: T:0.22368 C:0.22368 A:0.32895 G:0.22368
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.42105 C:0.17105 A:0.23684 G:0.17105
Average T:0.38596 C:0.16667 A:0.28070 G:0.16667
#19: C24
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.15789 A:0.23684 G:0.17105
Average T:0.39035 C:0.16228 A:0.28509 G:0.16228
#20: C22
position 1: T:0.22368 C:0.21053 A:0.35526 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.15789 A:0.23684 G:0.17105
Average T:0.39035 C:0.15789 A:0.28947 G:0.16228
#21: C27
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.42105 C:0.17105 A:0.23684 G:0.17105
Average T:0.38596 C:0.16667 A:0.28509 G:0.16228
#22: C19
position 1: T:0.23684 C:0.19737 A:0.35526 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.13158 A:0.28947 G:0.14474
Average T:0.39474 C:0.14474 A:0.30702 G:0.15351
#23: C32
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.15789 A:0.23684 G:0.17105
Average T:0.39035 C:0.16228 A:0.28509 G:0.16228
#24: C33
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.42105 C:0.17105 A:0.23684 G:0.17105
Average T:0.38596 C:0.16667 A:0.28509 G:0.16228
#25: C34
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.15789 A:0.23684 G:0.17105
Average T:0.39035 C:0.16228 A:0.28509 G:0.16228
#26: C17
position 1: T:0.23684 C:0.19737 A:0.35526 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.13158 A:0.28947 G:0.14474
Average T:0.39474 C:0.14474 A:0.30702 G:0.15351
#27: C12
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.11842 A:0.31579 G:0.13158
Average T:0.39035 C:0.14912 A:0.31140 G:0.14912
#28: C15
position 1: T:0.23684 C:0.19737 A:0.34211 G:0.22368
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.43421 C:0.13158 A:0.28947 G:0.14474
Average T:0.39474 C:0.14474 A:0.30263 G:0.15789
#29: C20
position 1: T:0.25000 C:0.19737 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.46053 C:0.10526 A:0.30263 G:0.13158
Average T:0.40789 C:0.13596 A:0.30702 G:0.14912
#30: C7
position 1: T:0.22368 C:0.22368 A:0.34211 G:0.21053
position 2: T:0.51316 C:0.10526 A:0.27632 G:0.10526
position 3: T:0.42105 C:0.17105 A:0.23684 G:0.17105
Average T:0.38596 C:0.16667 A:0.28509 G:0.16228
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 50 | Ser S TCT 2 | Tyr Y TAT 63 | Cys C TGT 107
TTC 92 | TCC 0 | TAC 57 | TGC 42
Leu L TTA 21 | TCA 29 | *** * TAA 0 | *** * TGA 0
TTG 30 | TCG 0 | TAG 0 | Trp W TGG 30
------------------------------------------------------------------------------
Leu L CTT 79 | Pro P CCT 61 | His H CAT 76 | Arg R CGT 0
CTC 21 | CCC 29 | CAC 44 | CGC 1
CTA 130 | CCA 1 | Gln Q CAA 30 | CGA 0
CTG 20 | CCG 0 | CAG 0 | CGG 0
------------------------------------------------------------------------------
Ile I ATT 212 | Thr T ACT 22 | Asn N AAT 89 | Ser S AGT 1
ATC 5 | ACC 0 | AAC 0 | AGC 0
ATA 114 | ACA 60 | Lys K AAA 98 | Arg R AGA 27
Met M ATG 90 | ACG 9 | AAG 52 | AGG 1
------------------------------------------------------------------------------
Val V GTT 90 | Ala A GCT 31 | Asp D GAT 89 | Gly G GGT 9
GTC 9 | GCC 0 | GAC 31 | GGC 20
GTA 69 | GCA 0 | Glu E GAA 0 | GGA 0
GTG 137 | GCG 0 | GAG 0 | GGG 0
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.22939 C:0.21579 A:0.34211 G:0.21272
position 2: T:0.51272 C:0.10702 A:0.27588 G:0.10439
position 3: T:0.43026 C:0.15395 A:0.25395 G:0.16184
Average T:0.39079 C:0.15892 A:0.29064 G:0.15965
Model 1: NearlyNeutral (2 categories)
TREE # 1: (4, 2, 20, 19, 14, 6, 16, 23, 24, 25, 13, 9, 5, (21, 8, 10), (((((12, (((15, 26, 7, 22), 28), 29), 1), 17), 27), 11, 18), 3, 30)); MP score: 91
lnL(ntime: 39 np: 42): -712.952919 +0.000000
31..4 31..2 31..20 31..19 31..14 31..6 31..16 31..23 31..24 31..25 31..13 31..9 31..5 31..32 32..21 32..8 32..10 31..33 33..34 34..35 35..36 36..37 37..12 37..38 38..39 39..40 40..15 40..26 40..7 40..22 39..28 38..29 37..1 36..17 35..27 34..11 34..18 33..3 33..30
0.000004 0.000004 0.013446 0.000004 0.000004 0.000004 0.000004 0.000004 0.013372 0.000004 0.000004 0.000004 0.000004 0.013467 0.000004 0.000004 0.000004 0.013446 0.013425 0.191863 0.165312 0.202570 0.042848 0.030664 0.013145 0.013752 0.013746 0.000004 0.000004 0.000004 0.000004 0.044741 0.057350 1.830426 0.166042 0.000004 0.000004 0.000004 0.000004 4.906641 0.837634 0.045423
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 2.839703
(4: 0.000004, 2: 0.000004, 20: 0.013446, 19: 0.000004, 14: 0.000004, 6: 0.000004, 16: 0.000004, 23: 0.000004, 24: 0.013372, 25: 0.000004, 13: 0.000004, 9: 0.000004, 5: 0.000004, (21: 0.000004, 8: 0.000004, 10: 0.000004): 0.013467, (((((12: 0.042848, (((15: 0.013746, 26: 0.000004, 7: 0.000004, 22: 0.000004): 0.013752, 28: 0.000004): 0.013145, 29: 0.044741): 0.030664, 1: 0.057350): 0.202570, 17: 1.830426): 0.165312, 27: 0.166042): 0.191863, 11: 0.000004, 18: 0.000004): 0.013425, 3: 0.000004, 30: 0.000004): 0.013446);
(C1: 0.000004, C21: 0.000004, C22: 0.013446, C24: 0.000004, C25: 0.000004, C29: 0.000004, C3: 0.000004, C32: 0.000004, C33: 0.013372, C34: 0.000004, C39: 0.000004, C4: 0.000004, C42: 0.000004, (C27: 0.000004, C31: 0.000004, C36: 0.000004): 0.013467, (((((C11: 0.042848, (((C14: 0.013746, C17: 0.000004, C18: 0.000004, C19: 0.000004): 0.013752, C15: 0.000004): 0.013145, C20: 0.044741): 0.030664, C9: 0.057350): 0.202570, C8: 1.830426): 0.165312, C12: 0.166042): 0.191863, C2: 0.000004, C6: 0.000004): 0.013425, C5: 0.000004, C7: 0.000004): 0.013446);
Detailed output identifying parameters
kappa (ts/tv) = 4.90664
MLEs of dN/dS (w) for site classes (K=2)
p: 0.83763 0.16237
w: 0.04542 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..4 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..2 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..20 0.013 162.5 65.5 0.2004 0.0021 0.0104 0.3 0.7
31..19 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..14 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..6 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..16 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..23 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..24 0.013 162.5 65.5 0.2004 0.0021 0.0104 0.3 0.7
31..25 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..13 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..9 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..5 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..32 0.013 162.5 65.5 0.2004 0.0021 0.0104 0.3 0.7
32..21 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
32..8 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
32..10 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..33 0.013 162.5 65.5 0.2004 0.0021 0.0104 0.3 0.7
33..34 0.013 162.5 65.5 0.2004 0.0021 0.0104 0.3 0.7
34..35 0.192 162.5 65.5 0.2004 0.0298 0.1487 4.8 9.7
35..36 0.165 162.5 65.5 0.2004 0.0257 0.1281 4.2 8.4
36..37 0.203 162.5 65.5 0.2004 0.0315 0.1570 5.1 10.3
37..12 0.043 162.5 65.5 0.2004 0.0067 0.0332 1.1 2.2
37..38 0.031 162.5 65.5 0.2004 0.0048 0.0238 0.8 1.6
38..39 0.013 162.5 65.5 0.2004 0.0020 0.0102 0.3 0.7
39..40 0.014 162.5 65.5 0.2004 0.0021 0.0107 0.3 0.7
40..15 0.014 162.5 65.5 0.2004 0.0021 0.0107 0.3 0.7
40..26 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
40..7 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
40..22 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
39..28 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
38..29 0.045 162.5 65.5 0.2004 0.0069 0.0347 1.1 2.3
37..1 0.057 162.5 65.5 0.2004 0.0089 0.0444 1.4 2.9
36..17 1.830 162.5 65.5 0.2004 0.2843 1.4185 46.2 92.9
35..27 0.166 162.5 65.5 0.2004 0.0258 0.1287 4.2 8.4
34..11 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
34..18 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
33..3 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
33..30 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
Time used: 1:56
Model 2: PositiveSelection (3 categories)
TREE # 1: (4, 2, 20, 19, 14, 6, 16, 23, 24, 25, 13, 9, 5, (21, 8, 10), (((((12, (((15, 26, 7, 22), 28), 29), 1), 17), 27), 11, 18), 3, 30)); MP score: 91
lnL(ntime: 39 np: 44): -712.952919 +0.000000
31..4 31..2 31..20 31..19 31..14 31..6 31..16 31..23 31..24 31..25 31..13 31..9 31..5 31..32 32..21 32..8 32..10 31..33 33..34 34..35 35..36 36..37 37..12 37..38 38..39 39..40 40..15 40..26 40..7 40..22 39..28 38..29 37..1 36..17 35..27 34..11 34..18 33..3 33..30
0.000004 0.000004 0.013446 0.000004 0.000004 0.000004 0.000004 0.000004 0.013372 0.000004 0.000004 0.000004 0.000004 0.013467 0.000004 0.000004 0.000004 0.013446 0.013425 0.191863 0.165312 0.202570 0.042849 0.030664 0.013145 0.013752 0.013746 0.000004 0.000004 0.000004 0.000004 0.044741 0.057350 1.830427 0.166042 0.000004 0.000004 0.000004 0.000004 4.906642 0.837634 0.000017 0.045423 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 2.839705
(4: 0.000004, 2: 0.000004, 20: 0.013446, 19: 0.000004, 14: 0.000004, 6: 0.000004, 16: 0.000004, 23: 0.000004, 24: 0.013372, 25: 0.000004, 13: 0.000004, 9: 0.000004, 5: 0.000004, (21: 0.000004, 8: 0.000004, 10: 0.000004): 0.013467, (((((12: 0.042849, (((15: 0.013746, 26: 0.000004, 7: 0.000004, 22: 0.000004): 0.013752, 28: 0.000004): 0.013145, 29: 0.044741): 0.030664, 1: 0.057350): 0.202570, 17: 1.830427): 0.165312, 27: 0.166042): 0.191863, 11: 0.000004, 18: 0.000004): 0.013425, 3: 0.000004, 30: 0.000004): 0.013446);
(C1: 0.000004, C21: 0.000004, C22: 0.013446, C24: 0.000004, C25: 0.000004, C29: 0.000004, C3: 0.000004, C32: 0.000004, C33: 0.013372, C34: 0.000004, C39: 0.000004, C4: 0.000004, C42: 0.000004, (C27: 0.000004, C31: 0.000004, C36: 0.000004): 0.013467, (((((C11: 0.042849, (((C14: 0.013746, C17: 0.000004, C18: 0.000004, C19: 0.000004): 0.013752, C15: 0.000004): 0.013145, C20: 0.044741): 0.030664, C9: 0.057350): 0.202570, C8: 1.830427): 0.165312, C12: 0.166042): 0.191863, C2: 0.000004, C6: 0.000004): 0.013425, C5: 0.000004, C7: 0.000004): 0.013446);
Detailed output identifying parameters
kappa (ts/tv) = 4.90664
MLEs of dN/dS (w) for site classes (K=3)
p: 0.83763 0.00002 0.16235
w: 0.04542 1.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..4 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..2 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..20 0.013 162.5 65.5 0.2004 0.0021 0.0104 0.3 0.7
31..19 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..14 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..6 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..16 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..23 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..24 0.013 162.5 65.5 0.2004 0.0021 0.0104 0.3 0.7
31..25 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..13 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..9 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..5 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..32 0.013 162.5 65.5 0.2004 0.0021 0.0104 0.3 0.7
32..21 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
32..8 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
32..10 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
31..33 0.013 162.5 65.5 0.2004 0.0021 0.0104 0.3 0.7
33..34 0.013 162.5 65.5 0.2004 0.0021 0.0104 0.3 0.7
34..35 0.192 162.5 65.5 0.2004 0.0298 0.1487 4.8 9.7
35..36 0.165 162.5 65.5 0.2004 0.0257 0.1281 4.2 8.4
36..37 0.203 162.5 65.5 0.2004 0.0315 0.1570 5.1 10.3
37..12 0.043 162.5 65.5 0.2004 0.0067 0.0332 1.1 2.2
37..38 0.031 162.5 65.5 0.2004 0.0048 0.0238 0.8 1.6
38..39 0.013 162.5 65.5 0.2004 0.0020 0.0102 0.3 0.7
39..40 0.014 162.5 65.5 0.2004 0.0021 0.0107 0.3 0.7
40..15 0.014 162.5 65.5 0.2004 0.0021 0.0107 0.3 0.7
40..26 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
40..7 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
40..22 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
39..28 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
38..29 0.045 162.5 65.5 0.2004 0.0069 0.0347 1.1 2.3
37..1 0.057 162.5 65.5 0.2004 0.0089 0.0444 1.4 2.9
36..17 1.830 162.5 65.5 0.2004 0.2843 1.4185 46.2 92.9
35..27 0.166 162.5 65.5 0.2004 0.0258 0.1287 4.2 8.4
34..11 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
34..18 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
33..3 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
33..30 0.000 162.5 65.5 0.2004 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C9)
Pr(w>1) post mean +- SE for w
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 0.997 0.003 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.468 0.132 0.076 0.058 0.050 0.046 0.044 0.043 0.042 0.042
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.004
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.148
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.009 0.085 0.555
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.009 0.030 0.110 0.042
sum of density on p0-p1 = 1.000000
Time used: 4:47
Model 7: beta (10 categories)
TREE # 1: (4, 2, 20, 19, 14, 6, 16, 23, 24, 25, 13, 9, 5, (21, 8, 10), (((((12, (((15, 26, 7, 22), 28), 29), 1), 17), 27), 11, 18), 3, 30)); MP score: 91
lnL(ntime: 39 np: 42): -709.304528 +0.000000
31..4 31..2 31..20 31..19 31..14 31..6 31..16 31..23 31..24 31..25 31..13 31..9 31..5 31..32 32..21 32..8 32..10 31..33 33..34 34..35 35..36 36..37 37..12 37..38 38..39 39..40 40..15 40..26 40..7 40..22 39..28 38..29 37..1 36..17 35..27 34..11 34..18 33..3 33..30
0.000004 0.000004 0.013596 0.000004 0.000004 0.000004 0.000004 0.000004 0.013526 0.000004 0.000004 0.000004 0.000004 0.013635 0.000004 0.000004 0.000004 0.013611 0.013593 0.184389 0.138441 0.223111 0.042959 0.031256 0.013138 0.013866 0.013837 0.000004 0.000004 0.000004 0.000004 0.044907 0.057809 1.940109 0.174392 0.000004 0.000004 0.000004 0.000004 4.213094 0.263493 1.957497
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 2.946263
(4: 0.000004, 2: 0.000004, 20: 0.013596, 19: 0.000004, 14: 0.000004, 6: 0.000004, 16: 0.000004, 23: 0.000004, 24: 0.013526, 25: 0.000004, 13: 0.000004, 9: 0.000004, 5: 0.000004, (21: 0.000004, 8: 0.000004, 10: 0.000004): 0.013635, (((((12: 0.042959, (((15: 0.013837, 26: 0.000004, 7: 0.000004, 22: 0.000004): 0.013866, 28: 0.000004): 0.013138, 29: 0.044907): 0.031256, 1: 0.057809): 0.223111, 17: 1.940109): 0.138441, 27: 0.174392): 0.184389, 11: 0.000004, 18: 0.000004): 0.013593, 3: 0.000004, 30: 0.000004): 0.013611);
(C1: 0.000004, C21: 0.000004, C22: 0.013596, C24: 0.000004, C25: 0.000004, C29: 0.000004, C3: 0.000004, C32: 0.000004, C33: 0.013526, C34: 0.000004, C39: 0.000004, C4: 0.000004, C42: 0.000004, (C27: 0.000004, C31: 0.000004, C36: 0.000004): 0.013635, (((((C11: 0.042959, (((C14: 0.013837, C17: 0.000004, C18: 0.000004, C19: 0.000004): 0.013866, C15: 0.000004): 0.013138, C20: 0.044907): 0.031256, C9: 0.057809): 0.223111, C8: 1.940109): 0.138441, C12: 0.174392): 0.184389, C2: 0.000004, C6: 0.000004): 0.013593, C5: 0.000004, C7: 0.000004): 0.013611);
Detailed output identifying parameters
kappa (ts/tv) = 4.21309
Parameters in M7 (beta):
p = 0.26349 q = 1.95750
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00000 0.00032 0.00220 0.00791 0.02072 0.04521 0.08809 0.16043 0.28491 0.53602
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..4 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..2 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..20 0.014 163.7 64.3 0.1146 0.0014 0.0124 0.2 0.8
31..19 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..14 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..6 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..16 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..23 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..24 0.014 163.7 64.3 0.1146 0.0014 0.0124 0.2 0.8
31..25 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..13 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..9 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..5 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..32 0.014 163.7 64.3 0.1146 0.0014 0.0125 0.2 0.8
32..21 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
32..8 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
32..10 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..33 0.014 163.7 64.3 0.1146 0.0014 0.0125 0.2 0.8
33..34 0.014 163.7 64.3 0.1146 0.0014 0.0124 0.2 0.8
34..35 0.184 163.7 64.3 0.1146 0.0193 0.1688 3.2 10.8
35..36 0.138 163.7 64.3 0.1146 0.0145 0.1267 2.4 8.1
36..37 0.223 163.7 64.3 0.1146 0.0234 0.2042 3.8 13.1
37..12 0.043 163.7 64.3 0.1146 0.0045 0.0393 0.7 2.5
37..38 0.031 163.7 64.3 0.1146 0.0033 0.0286 0.5 1.8
38..39 0.013 163.7 64.3 0.1146 0.0014 0.0120 0.2 0.8
39..40 0.014 163.7 64.3 0.1146 0.0015 0.0127 0.2 0.8
40..15 0.014 163.7 64.3 0.1146 0.0015 0.0127 0.2 0.8
40..26 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
40..7 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
40..22 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
39..28 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
38..29 0.045 163.7 64.3 0.1146 0.0047 0.0411 0.8 2.6
37..1 0.058 163.7 64.3 0.1146 0.0061 0.0529 1.0 3.4
36..17 1.940 163.7 64.3 0.1146 0.2035 1.7759 33.3 114.1
35..27 0.174 163.7 64.3 0.1146 0.0183 0.1596 3.0 10.3
34..11 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
34..18 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
33..3 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
33..30 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
Time used: 12:04
Model 8: beta&w>1 (11 categories)
TREE # 1: (4, 2, 20, 19, 14, 6, 16, 23, 24, 25, 13, 9, 5, (21, 8, 10), (((((12, (((15, 26, 7, 22), 28), 29), 1), 17), 27), 11, 18), 3, 30)); MP score: 91
lnL(ntime: 39 np: 44): -709.304655 +0.000000
31..4 31..2 31..20 31..19 31..14 31..6 31..16 31..23 31..24 31..25 31..13 31..9 31..5 31..32 32..21 32..8 32..10 31..33 33..34 34..35 35..36 36..37 37..12 37..38 38..39 39..40 40..15 40..26 40..7 40..22 39..28 38..29 37..1 36..17 35..27 34..11 34..18 33..3 33..30
0.000004 0.000004 0.013596 0.000004 0.000004 0.000004 0.000004 0.000004 0.013526 0.000004 0.000004 0.000004 0.000004 0.013635 0.000004 0.000004 0.000004 0.013611 0.013593 0.184389 0.138442 0.223112 0.042959 0.031256 0.013138 0.013867 0.013837 0.000004 0.000004 0.000004 0.000004 0.044907 0.057809 1.940107 0.174393 0.000004 0.000004 0.000004 0.000004 4.213129 0.999990 0.263492 1.957528 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 2.946264
(4: 0.000004, 2: 0.000004, 20: 0.013596, 19: 0.000004, 14: 0.000004, 6: 0.000004, 16: 0.000004, 23: 0.000004, 24: 0.013526, 25: 0.000004, 13: 0.000004, 9: 0.000004, 5: 0.000004, (21: 0.000004, 8: 0.000004, 10: 0.000004): 0.013635, (((((12: 0.042959, (((15: 0.013837, 26: 0.000004, 7: 0.000004, 22: 0.000004): 0.013867, 28: 0.000004): 0.013138, 29: 0.044907): 0.031256, 1: 0.057809): 0.223112, 17: 1.940107): 0.138442, 27: 0.174393): 0.184389, 11: 0.000004, 18: 0.000004): 0.013593, 3: 0.000004, 30: 0.000004): 0.013611);
(C1: 0.000004, C21: 0.000004, C22: 0.013596, C24: 0.000004, C25: 0.000004, C29: 0.000004, C3: 0.000004, C32: 0.000004, C33: 0.013526, C34: 0.000004, C39: 0.000004, C4: 0.000004, C42: 0.000004, (C27: 0.000004, C31: 0.000004, C36: 0.000004): 0.013635, (((((C11: 0.042959, (((C14: 0.013837, C17: 0.000004, C18: 0.000004, C19: 0.000004): 0.013867, C15: 0.000004): 0.013138, C20: 0.044907): 0.031256, C9: 0.057809): 0.223112, C8: 1.940107): 0.138442, C12: 0.174393): 0.184389, C2: 0.000004, C6: 0.000004): 0.013593, C5: 0.000004, C7: 0.000004): 0.013611);
Detailed output identifying parameters
kappa (ts/tv) = 4.21313
Parameters in M8 (beta&w>1):
p0 = 0.99999 p = 0.26349 q = 1.95753
(p1 = 0.00001) w = 1.00000
MLEs of dN/dS (w) for site classes (K=11)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.00001
w: 0.00000 0.00032 0.00220 0.00791 0.02072 0.04521 0.08809 0.16042 0.28490 0.53601 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..4 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..2 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..20 0.014 163.7 64.3 0.1146 0.0014 0.0124 0.2 0.8
31..19 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..14 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..6 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..16 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..23 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..24 0.014 163.7 64.3 0.1146 0.0014 0.0124 0.2 0.8
31..25 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..13 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..9 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..5 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..32 0.014 163.7 64.3 0.1146 0.0014 0.0125 0.2 0.8
32..21 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
32..8 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
32..10 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
31..33 0.014 163.7 64.3 0.1146 0.0014 0.0125 0.2 0.8
33..34 0.014 163.7 64.3 0.1146 0.0014 0.0124 0.2 0.8
34..35 0.184 163.7 64.3 0.1146 0.0193 0.1688 3.2 10.8
35..36 0.138 163.7 64.3 0.1146 0.0145 0.1267 2.4 8.1
36..37 0.223 163.7 64.3 0.1146 0.0234 0.2042 3.8 13.1
37..12 0.043 163.7 64.3 0.1146 0.0045 0.0393 0.7 2.5
37..38 0.031 163.7 64.3 0.1146 0.0033 0.0286 0.5 1.8
38..39 0.013 163.7 64.3 0.1146 0.0014 0.0120 0.2 0.8
39..40 0.014 163.7 64.3 0.1146 0.0015 0.0127 0.2 0.8
40..15 0.014 163.7 64.3 0.1146 0.0015 0.0127 0.2 0.8
40..26 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
40..7 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
40..22 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
39..28 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
38..29 0.045 163.7 64.3 0.1146 0.0047 0.0411 0.8 2.6
37..1 0.058 163.7 64.3 0.1146 0.0061 0.0529 1.0 3.4
36..17 1.940 163.7 64.3 0.1146 0.2035 1.7759 33.3 114.1
35..27 0.174 163.7 64.3 0.1146 0.0183 0.1596 3.0 10.3
34..11 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
34..18 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
33..3 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
33..30 0.000 163.7 64.3 0.1146 0.0000 0.0000 0.0 0.0
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C9)
Pr(w>1) post mean +- SE for w
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.009 0.991
p : 0.911 0.089 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.001 0.024 0.081 0.129 0.151 0.155 0.152 0.151 0.156
ws: 0.469 0.138 0.076 0.057 0.049 0.045 0.043 0.042 0.041 0.041
Time used: 21:51
Model 1: NearlyNeutral -712.952919 Model 2: PositiveSelection -712.952919 Model 7: beta -709.304528 Model 8: beta&w>1 -709.304655 Model 2 vs 1 0 Model 8 vs 7 -.000254
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
