--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -10099.67 -10119.81
2 -10100.19 -10122.33
--------------------------------------
TOTAL -10099.90 -10121.72
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 8.712615 0.443487 7.429567 9.971106 8.666142 915.88 944.14 1.001
r(A<->C){all} 0.171104 0.000167 0.147341 0.196500 0.170936 657.74 786.85 1.000
r(A<->G){all} 0.238035 0.000227 0.209421 0.268090 0.237725 753.04 808.25 1.002
r(A<->T){all} 0.121690 0.000120 0.101374 0.143463 0.121390 750.78 866.16 1.000
r(C<->G){all} 0.086293 0.000111 0.065996 0.106374 0.085743 913.95 925.77 1.000
r(C<->T){all} 0.306111 0.000300 0.272822 0.340617 0.305777 695.49 752.91 1.002
r(G<->T){all} 0.076767 0.000092 0.058932 0.095508 0.076489 1030.79 1045.69 1.000
pi(A){all} 0.288423 0.000066 0.272913 0.305252 0.288331 761.88 787.10 1.002
pi(C){all} 0.242808 0.000059 0.228529 0.258006 0.242826 878.44 901.95 1.000
pi(G){all} 0.226230 0.000071 0.209656 0.241788 0.226209 603.04 687.17 1.000
pi(T){all} 0.242539 0.000067 0.227203 0.258865 0.242487 794.06 846.52 1.002
alpha{1,2} 0.648669 0.003697 0.535503 0.772369 0.645780 1043.15 1150.48 1.000
alpha{3} 6.863887 2.934357 3.952215 10.399960 6.642874 1364.80 1432.90 1.000
pinvar{all} 0.012587 0.000070 0.000033 0.028559 0.011293 1125.60 1215.38 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -11441.475544
Model 2: PositiveSelection -11441.475544
Model 7: beta -11350.660993
Model 8: beta&w>1 -11347.750222
Model 2 vs 1 0
Model 8 vs 7 5.821542
-- Starting log on Thu Oct 27 00:03:59 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.08 sec, SCORE=999, Nseq=19, Len=549
C1 -MSDNGTQNQRSASR-ITFGGPSDSTDNNQDGGRSGARPKQR--------
C2 MSDNGPQPSQRSAPR-ITFGGPTDSIDNNQNGGRNGARPKQR--------
C3 -------------MSSVKFE-------------ASGRTGRTP--------
C4 MSDNGPQPSQRSAPR-ITFGGPTDSIDNNQNGGRNGARPKQR--------
C5 -------------MSSVKFE-------------ASGRTGRTP--------
C6 MSGRNKPRSGTSTPK-VTFKQESDGSD-SESERRASIRPKNK-------G
C7 -------------MASVSFE------------QQRGRSGRVP--------
C8 -------------MASVSFD-----------DQPRGRGGRMP--------
C9 -------------MASVSFD-----------DQSRGRSGRVP--------
C10 -------------MASVSFD-----------DQSRGRSGRVP--------
C11 MSGRNRSRPGTPSPK-VTFKQESDGSD-SESDRRNGNRTGARSKNNNGRS
C12 MSGRRTPR---NQPQ-VSFKNESD-SD-SESGARSQSRGRNSNNNNNGGN
C13 MSGRRTPR---NQPQ-VSFKNESD-SD-SESGARSQSRGRNSNNNNNGGN
C14 MSGRRTPR---NQPQ-VSFKNESD-SD-SESGQRSQSRGRNPNNNNNGGN
C15 -------MATPAAPRTISFA---DNND-NQTNQQQRGRGRNP--------
C16 -MSDNGTQNQRSASR-ITFGGPSDSTDNNQDGGRSGARPKQR--------
C17 -MSDNGPQNQRSAPR-ITFGGPSDSTDNNQDGGRSGVRPKQR--------
C18 -------MATPAAPRAVSFA---DNND-NSNNNQSRGRGRNP--------
C19 -------MATPAAPRAVTFG---DNNDNNTNTQQSRGRGRTP--------
:.*
C1 ----------RPQGLPNNTASWFTALTQHGKEGL-KFPQGQGVPINTNSG
C2 ----------RPQGLPNNTASWFTALTQHGKEEL-RFSRGQGVPINTNSG
C3 -------------------LSYFAPITVTSGKNLWNVLPKNAVPSGKG-K
C4 ----------RPQGLPNNTASWFTALTQHGKEEL-RFSRGQGVPINTNSG
C5 -------------------LSYFAPITVTSGKNLWNVLPKNAVPSGKG-K
C6 ----SSFKPEKPKAAPPQNVSWFAPLVQTGKNDL-RFPRGQGVPISQGVD
C7 -------------------LSFFYPVIVTDNTPFWKVMPNNAVPNGMG-T
C8 -------------------LSYYYPIMVTDGKPLFKVLQSNAVPTGKG-T
C9 -------------------LSFYNPVMVTDDKPLFKVMPHNAVPTGKG-N
C10 -------------------LSFYNPVMVTDDKPLFKVMPHNAVPTGKG-N
C11 ----SAPRPEKPKAAPLQNVSWFAPLVQTGKSEL-RFARGEGVPVSQGVD
C12 GGARRKDKPEKPRAAPAQNVSWFLPIVQTGKQDL-RFARGEGVPVSQGVD
C13 GGARRKDKPEKPRAAPAQNVSWFLPIVQTGKQDL-RFARGEGVPVSQGVD
C14 GGARRKDKPEKPRAAPQQNVSWFLPLVQTGKNDL-RFPRGQGVPITQGVD
C15 ----------KPRPAPNNTVSWYTGLTQHGKNPL-AFPPGQGVPLNANST
C16 ----------RPQGLPNNTASWFTALTQHGKEGL-KFPQGQGVPINTNSG
C17 ----------RPQGLPNNTASWFTALTQHGKEGL-KFPQGQGVPINTNSG
C18 ----------KPRPAPNNTVSWYTGLTQHGKVSL-SFPPGQGVPLNANST
C19 ----------KPRPAPNNTVSWYTGLTQHGKVPL-SFPPGQGVPLNANST
*:: : . : . :.** .
C1 RDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG
C2 PDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG
C3 ANQQVGYWSEQTR-WKMQKGERVEKPSFWHFYFLGTGPHADAKFRERIQG
C4 PDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG
C5 ANQQVGYWSEQTR-WKMQKGERVEKPSFWHFYFLGTGPHADAKFRERIQG
C6 PVYNHGYWLRTQRSFQKG-GKLVQANPRWYFYYTGTGRYGDMRYGTKNPD
C7 KDERIGYWNEQKR-WRMRKGQRIDLPSKWHFYFLGTGPHKEASFRQRLDG
C8 KEQQIGYWNMQAR-WRMVKGVRKDLDPKWHFYYLGTGPHADAPFRQRLEG
C9 KSQQIGYWNMQPR-WRMVKGQRKDLTPKWHFYYLGTGPHAEAPFRQKLDG
C10 KSQQIGYWNMQPR-WRMVKGQRKDLTPKWHFYYLGTGPHAEAPFRQKLDG
C11 PTYEHGYWLRTQRSFQKG-GKQVLANPRWYFYYTGTGRFGDLRFGTKNPD
C12 ITYQHGYWLRRQRTFNKG-GKQVQANPRWFFYYTGTGPYEGLRYGSRNND
C13 ITYQHGYWLRRQRTFNKG-GKQVQANPRWFFYYTGTGPYEGLRYGSRNND
C14 PTFQHGYWLFRQRSFQKG-GKQVMANPRWYFYYTGTGPYEGLRYGSKSND
C15 TAQNAGYWRRQDRKINTGNGVK-QLSPRWFFYYTGTGPEANLPFRSVKDG
C16 TDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG
C17 RDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG
C18 PAQNAGYWRRQDRKINTGNGTK-SLAPRWYFYYTGTGPEANLPFRAVKDG
C19 PAQNAGYWRRQDRKINTGNGTK-QLAPRWFFYYTGTGPEANLPFRAVKDG
. **: * . * . *.**: *** : .
C1 IVWVAIEGALNTPKDHIGTRNPNNNAAIV---LQLPQGTTLP-KGFYAEG
C2 IVWVATEGALNTPKDHIGTRNPNNNAATV---LQLPQGTTLP-KGFYAEG
C3 VVWVSKANADLKP-TDLGTRSKARSLIIPKFDIELPDDIEIV-DKSSAPN
C4 IVWVATEGALNTPKDHIGTRNPNNNAATV---LQLPQGTTLP-KGFYAEG
C5 VVWVSKANADLKP-TDLGTRSKARSLITPKFDIELPDDIEIV-DKSSAPN
C6 LIWVGEEGANVNRVGDMGTRNPNNDGAIS---VQLHDG--IP-KGFYAEG
C7 VYWVAVNGAKTQP-TSLGSRKKSAAMMVPQFSVSLPSNIQVQTENASAPA
C8 VFWVAVQGSKTEP-TGLGVRKRNAPLLKPQFSFKLPVNVEIQEDSASRPN
C9 VFWVAVQGSDTQP-TGLGVRKRNQPLIKPQFAVKLPANIEIQEENASKPN
C10 VFWVAVQGSDTQP-TGLGVRKRNQPLIKPQFAVKLPANIEIQEENASKPN
C11 IVWVGQEGANINRLGDMGTRNPSNDSAIP---VQLTGG--IP-KGFYAEG
C12 IIWVGNEGANVNRLGDMGTRNPANDAGIP---VQLAEG--IP-KGFYAEG
C13 IIWVGNEGANVNRLGDMGTRNPANDAGIP---VQLAEG--IP-KGFYAEG
C14 LIWVGNEGANVNRIGDMGTRNPANDAGLV---VQLADG--IP-KGFYAEG
C15 IVWVYEEGATDAP-SVFGTRNPANDAAIV---CQFAPGTLIP-KNFHIEG
C16 IVWVATEGALNTPKDHIGTRNPNNNAAIV---LQLPQGTTLP-KGFYAEG
C17 IVWVATEGALNTPKDHIGTRNPNNNAAIV---LQLPQGTTLP-KGFYAEG
C18 IIWVHEDGATDAP-STFGTRNPNNDAAIV---TQFAPGTKLP-KNFHIEG
C19 IVWVHEEGATDAP-STFGTRNPNNDAAIV---TQFAPGTKLP-KNFHIEG
: ** .: :* *. .: . : .
C1 SRSGSQASSR-----SSSRSRGNSRTSTPG--------------------
C2 SRGGSQASSR-----SSSRSRGNSRNSTPG--------------------
C3 SRGNSRSQSRGAKSGSKSRGNSQTRDNSKS-RDNSNNRGKSQSRNNSRSR
C4 SRGGSQASSR-----SSSRSRGNSRNSTPG--------------------
C5 SRGNSRSQSRGAKSGSKSRGNSQTRDNSKS-RDNSNNRGKSQSRNNSRSR
C6 RNSRSNSRNS-----SRNSSRASSQGNSRA--------------------
C7 SRNQSQNR-------SQSANRSQSRGPNQNVNQNQ----------NTNGN
C8 SRNPSSNRDR-----SQSGNRSASSGPKQGNSQNQ---NNSSQGNNSNNQ
C9 SRNPSTNRDR-----SQSGNRSASRGPQQGNTQNQNQNNNSSKGNQNNNQ
C10 SRNPSTNRDR-----SQSGNRSASRGPQQGNTQNQNQNNNSSKGNQNNNQ
C11 RGSRGNSRSS-----SRNSSRASSRGNSRA--------------------
C12 RNSRGNSRNS-----SRSSSRGSSNANSRN--------------------
C13 RNSRGNSRNS-----SRSSSRGSSNANSRN--------------------
C14 RNSRGNSRNS-----SRSSSRGSSNANSRN--------------------
C15 TGGNSQSSSR-----ASSNSRNSSRSNSRG----------------GRST
C16 SRSGSQASSR-----SSSRSRGNSRTSTPG--------------------
C17 SRNGSQASSR-----SSSRSRGNSRTSTPG--------------------
C18 TGGNSQSSSR-----ASSASRNSSRSNSRG----------------SRSG
C19 TGGNSQSSSR-----ASSASRGSSRSSSRG----------------ARSG
. . : . .. :
C1 -SSRGNSPARVASGGGE----TALALLLLDRLNQL---------ESKVSG
C2 -SSRGNSPARMASGGGE----TALALLLLDRLNQL---------ESKVSG
C3 GQQRNNNQQRQGSGNAGNNT-ADLAAAIVLALEKAGLARDT---EKAPKK
C4 -SSRGNSPARMAIGGGE----TALALLLLDRLNQL---------ESKVSG
C5 GQQRNNNQQRQGSGNAGNNT-ADLAAAIVLALEKAGLARDT---EKAPKK
C6 -GSRNASPGRNAPNVASGN--EPWMAYLVQKLEAL---------ENKVNG
C7 QRARSQSRNRGSNNNQPQNQ-VDIVAAVKAALQQLGVGNQNQGGTGKKSK
C8 QRSRNNSKSRGQNNQSNNSQ-ADIVAAVKQALKELGVSPQEK--KNKQKG
C9 QRSRNNSKSRSQNNSQPQNQQVDIVAAVKQALKELGVSPQEK--KQKQKG
C10 QRSRNNSKSRSQNNSQPQNQQVDIVAAVKQALKELGVSPQEK--KQKQKG
C11 -GSRGASPGRPAATPSA----EPWMAYLVQKLEKL---------ESQVNG
C12 -QSRSNSPGRGSAPPSGG---EPWMAYLIQKLENL---------EQRVDG
C13 -QSRSNSPGRGSAPPSGG---EPWMAYLIQKLENL---------EQRVDG
C14 -QSRSNSPGRGSAPPSGS---EPWMAYLIQKLENL---------EQRVDG
C15 SNSRGTSPVSHGVGSAESLAALPLLLDLQKRLADL------------ESG
C16 -SSRGNSPARVASGGGE----TALALLLLDRLNQL---------ESKVSG
C17 -SSRGNSPARVASGGGE----TALALLLLDRLNQL---------ESKVSG
C18 NSSRGTSPGPSGVGAVGG---EMLYLDLLNRLQAL------------ESG
C19 NSSRSASPGPAGIGAVGGDASSILYLSLLKRLEDL------------EAG
*. . : *
C1 KGQ-QQQGQTVTKKSASEASKKPRQ-------KRTATKQYNVTQAFGRRG
C2 KG--QQQGQTVTKKSAAEASKKPRQ-------KRTATKQYNVTQAFGRRG
C3 ESPNNNKKQKSRASSPAPAQSKNTDQLTKVVWKRVPDPSCNVKQCF---G
C4 KG--QQQGQTVTKKSAAEASKKPRQ-------KRTATKQYNVTQAFGRRG
C5 ESPNNNKKQKSRASSPAPAQSKNTDQLTKVVWKRMPDPSCNVKQCF---G
C6 PKE-TKKPVQVTKNEAAANAKKLRH-------KRTPHKGSGVTTNYGRRG
C7 SNSGVNTPKEQRAKSPAKTPPVQRKQMERPVWKRVPNSSENVTACF---G
C8 STSGNNTPKEQRSKSPAPSPNTQRKQIERPVWKRVPTSAEDVTVCF---G
C9 NTSGNNTPKEQRAKSPARSPSSPRKQLERPVWKRVPTEAENVTQCF---G
C10 NTSGNNTPKEQRAKSPARSPASPRKQLERPVWKRVPTEAENVTQCF---G
C11 TKPVTKNPLQVTKNEAAANAKKLRH-------KRTAHKGSGVTMNYGRRG
C12 KKS-DKQPVKVTKNVASENAKKLRH-------KRTAHKGSNATQNYGRRG
C13 KKS-DKQPVKVTKNVASENAKKLRH-------KRTAHKGSNATQNYGRRG
C14 KKS-DKQPVKVTKNVASENAKKLRH-------KRTAHKGSNVTQNYGRRG
C15 K---SKQPKVVTKKDASAAKNKMRH-------KRVATKNFNVTQAFGLRG
C16 KGQ-QQQGQTVTKKSASEASKKPRQ-------KRTATKQYNVTQAFGRRG
C17 KGQ-QQQGQTVTKKSASEASKKPRQ-------KRTATKQYNVTQAFGRRG
C18 KTK-QAQPKVITKKDAVAAKNKMRH-------KRVATKGFNMVQAFGLRG
C19 KS--KSAPKVVTKKDAAAAKNKMRH-------KRVATKSFNMVQAFGRRG
. . . ** . . : *
C1 PDQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG
C2 PEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG
C3 PRSTYQNFGDEDAVEKGVRAKHYPSWAELTPTTAALLFGGEVMTVEDGED
C4 PEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG
C5 PRSTYQNFGDEEAVEKGVRAKHYPSWAELTPNTAALLFGGEVMTVEDGED
C6 PGDLEGNFGDLNMLKLGTDDSRFPAAAQMAPNVASFLFMSHFSVREENDA
C7 PRDAVHNFGDSDVVHHGTDAKHWPQLAELIPTPAALAFGSEISTTEVGDK
C8 PRDTQQNFGDQDLVRHGVDAKHYPQLAEFVPGTAALLFGGEVSTRESGED
C9 PRDTLRNFGDRELTLRGVEAKNYPQIAEFVPTPAALLFGGEVSTREAGED
C10 PRDTLRNFGDRELTLRGVEAKNYPQIAEFVPTPAALLFGGEVSTREAGED
C11 PGDLEGNFGDLDMLKLGTDDPRFAAAAQMAPNVSSFLFMSHLSTREEGDA
C12 PGNLEGNFGDQEFLKLGTDDPRFPVVAQMAPNTSSFVFMSHFTPRYEADA
C13 PGNLEGNFGDQEFLKLGTDDPRFPVVAQMAPNTSSFVFMSHFTPRYEADA
C14 PGNLEGNFGDQDFLKLGTDDPRFPVVAQMAPNTSSFVFMSQFTPRYESDA
C15 PGPLQGNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLTHQSND
C16 PDQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG
C17 PDQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG
C18 PGDLQGNFGDLQLNKLGTEDPRWPQIAELAPSASAFIGMSQFKLTHQSND
C19 PGDLQGNFGDLQLNKLGTEDPRWPQIAELAPSASAFMGMSQFKLTHQSND
* **** : *. .:. *:: * ::: ... .
C1 T------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK
C2 T------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK
C3 I------VIQYTYQMRVPKTTPALQTFL----PQVSAFAN-----SGGDD
C4 T------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK
C5 I------VIQYTYQMRVPKTTPALQTFL----PQVSAFAN-----ASGDD
C6 L------WLHYKGAIKLPKDDPNYDQWTKILGENLNAYKNFPPVEPKKDK
C7 V------EITYTYKMKVDKADKNLPAFL----QQVSAYAQ-----P----
C8 V------EITFHYKLKVKKSDKNLPLFL----QQVSAYAL-----P----
C9 V------EITFHYKMKVKKDDKNLPLFL----QQVSAYAL-----P----
C10 V------EITFHYKMKVKKDDKNLPLFL----QQVSAYAL-----P----
C11 M------WLHYKGAIKLPKDDPNYDQWTKILAENLNAYRDFPPPAPKKDK
C12 L------WLDYTGSIKLPRDDPNFPQWEKLLAENIDAYKSFPPPKPKSDK
C13 L------WLDYTGSIKLPRDDPNFPQWEKLLAENIDAYKSFPPPKPKSDK
C14 L------WLDYTGSIKLPRDDPNFPQWEKLLAENLDAYKSFPPPKPKSDK
C15 DKGEPIYFLSYSGAIKLDPKNPNYKKWLELLEANIDAYKTF----PKKER
C16 T------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK
C17 T------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK
C18 TDGAPVYFLRYSGAIKLDPKNPNYNKWLELIEQNVDAYKTF----PKKEK
C19 ADGSPVYFLRYSGAIKLDPKNPNYQKWMELLEANIDAYKSF----PVKEK
: : ::: ::.*: .
C1 KKKTDEA-------------------------------------------
C2 KKKTDEA-------------------------------------------
C3 ASESGQD------------------------------------MPVVTSA
C4 KKKTDEA-------------------------------------------
C5 ESESGQE------------------------------------MPVVTSA
C6 KKKEEAS--VEVAVYEDAATGTDQPIVQKIWVKDDGVQTDDEWIGGDDTV
C7 --------------------------------------------------
C8 --------------------------------------------------
C9 --------------------------------------------------
C10 --------------------------------------------------
C11 KKKEETT--QETVIFEDASTGTDQP-VVKVWVKDQDAQTDDEWLGGDETV
C12 KKKSDKSDSAAGPSEDLQMQVVDPSGVQRIYMKDAADQTDDEWL-QDDTI
C13 KKKSDKSDSAAGPSEDLQMQVVDPSGVQRIYMKDAADQTDDEWL-QDDTI
C14 KKKSDKSDSATGPSADLQMQVVDPSGVQRIYMKDAADQTDDEWL-QDDTI
C15 KPKTTED---------------------------------GASASSSASQ
C16 KKKTDEA-------------------------------------------
C17 KKKTDEA-------------------------------------------
C18 KQKAPKE-------------------------------------------
C19 KQKADDN-----------------------------KQDSTEDSGDLFAE
C1 ----QPLPQR-KKLPTVTLLPAADMDD---FSRQLQNSMSGASADSTQA
C2 ----QPLPQRQKKQPIVTLLPAADMDD---FSRQLQNSMSGASADSTQA
C3 AESAAPAPASTPKLNPRAETFVPPKVDPNYFAGMKVEIMNKTISDDSTV
C4 ----QPLPQRQKKQPIVTLLPAADMDD---FSRQLQNSMSGASADSTQA
C5 AESAAPAPAPTPKLNPKAETFVPPKVDPNYFAGMKVEIMNKTISDDSTV
C6 YEEEDDKPKAQRRHKKRASTASR--VT----------VADPTNLANERS
C7 ----SQANQISSQLNPVAPVFTPGMDD-------SVEIIDQVFDTDV--
C8 ----SQAPNIPSQLNPIAPDFTPGFEM----VNETVEIIDQVYDTPDA-
C9 ----SQAPNVPSQLNPVAPDFTPSGVE---MVNETVEIIDQVYDSFDA-
C10 ----SQAPNVPSQLNPVAPDFTPSGVE---MVNETVEIIDQVYDSFDA-
C11 YEEEDDRPKTQRRHKKRGSTASR--VT----------IADPTNAGAERS
C12 YEDENDKPKAQRRQSIKKRNATHQRHV----------SIDGAAQSSA--
C13 YEDENDKPKAQRRQSIKKRNATHQRHV----------SIDGAAQSSA--
C14 YEDENDKPKAQRRQSIKKRNAQRHV------------SIDGSAQSSA--
C15 MEDVDAKPQRKPKSRVAGSITMRSGSS--------PALQDVNFDSEA--
C16 ----QPLPQR-KKQPTVTLLPAADMDD---FSRQLQNSMSGASADSTQA
C17 ----QPLPQRQKKQPTVTLLPAADMDD---FSRQLQNSMSGASADSTQA
C18 EPSDQMNVQPPKEQRVQGSITQRSRTP-------RPSVQPGPMTDVNTD
C19 VVASAMASQSQPQRAPKGSITQRSRAP-----RAPVSQMEDVNQTDDRQ
.
-- Starting log on Thu Oct 27 00:04:24 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.73 sec, SCORE=754, Nseq=19, Len=549
C1 -MSDNGTQNQRSASR-ITFGGPSDSTDNNQDGGRSGARPKQR--------
C2 MSDNGPQPSQRSAPR-ITFGGPTDSIDNNQNGGRNGARPKQR--------
C3 -------------MSSVKFE-------------ASGRTGRTP--------
C4 MSDNGPQPSQRSAPR-ITFGGPTDSIDNNQNGGRNGARPKQR--------
C5 -------------MSSVKFE-------------ASGRTGRTP--------
C6 MSGRNKPRSGTSTPK-VTFKQESDGSD-SESERRASIRPKNK-------G
C7 -------------MASVSFE------------QQRGRSGRVP--------
C8 -------------MASVSFD-----------DQPRGRGGRMP--------
C9 -------------MASVSFD-----------DQSRGRSGRVP--------
C10 -------------MASVSFD-----------DQSRGRSGRVP--------
C11 MSGRNRSRPGTPSPK-VTFKQESDGSD-SESDRRNGNRTGARSKNNNGRS
C12 MSGRRTPR---NQPQ-VSFKNESD-SD-SESGARSQSRGRNSNNNNNGGN
C13 MSGRRTPR---NQPQ-VSFKNESD-SD-SESGARSQSRGRNSNNNNNGGN
C14 MSGRRTPR---NQPQ-VSFKNESD-SD-SESGQRSQSRGRNPNNNNNGGN
C15 -------MATPAAPRTISFA---DNND-NQTNQQQRGRGRNP--------
C16 -MSDNGTQNQRSASR-ITFGGPSDSTDNNQDGGRSGARPKQR--------
C17 -MSDNGPQNQRSAPR-ITFGGPSDSTDNNQDGGRSGVRPKQR--------
C18 -------MATPAAPRAVSFA---DNND-NSNNNQSRGRGRNP--------
C19 -------MATPAAPRAVTFG---DNNDNNTNTQQSRGRGRTP--------
:.*
C1 ----------RPQGLPNNTASWFTALTQHGKEGL-KFPQGQGVPINTNSG
C2 ----------RPQGLPNNTASWFTALTQHGKEEL-RFSRGQGVPINTNSG
C3 -------------------LSYFAPITVTSGKNLWNVLPKNAVPSGKG-K
C4 ----------RPQGLPNNTASWFTALTQHGKEEL-RFSRGQGVPINTNSG
C5 -------------------LSYFAPITVTSGKNLWNVLPKNAVPSGKG-K
C6 ----SSFKPEKPKAAPPQNVSWFAPLVQTGKNDL-RFPRGQGVPISQGVD
C7 -------------------LSFFYPVIVTDNTPFWKVMPNNAVPNGMG-T
C8 -------------------LSYYYPIMVTDGKPLFKVLQSNAVPTGKG-T
C9 -------------------LSFYNPVMVTDDKPLFKVMPHNAVPTGKG-N
C10 -------------------LSFYNPVMVTDDKPLFKVMPHNAVPTGKG-N
C11 ----SAPRPEKPKAAPLQNVSWFAPLVQTGKSEL-RFARGEGVPVSQGVD
C12 GGARRKDKPEKPRAAPAQNVSWFLPIVQTGKQDL-RFARGEGVPVSQGVD
C13 GGARRKDKPEKPRAAPAQNVSWFLPIVQTGKQDL-RFARGEGVPVSQGVD
C14 GGARRKDKPEKPRAAPQQNVSWFLPLVQTGKNDL-RFPRGQGVPITQGVD
C15 ----------KPRPAPNNTVSWYTGLTQHGKNPL-AFPPGQGVPLNANST
C16 ----------RPQGLPNNTASWFTALTQHGKEGL-KFPQGQGVPINTNSG
C17 ----------RPQGLPNNTASWFTALTQHGKEGL-KFPQGQGVPINTNSG
C18 ----------KPRPAPNNTVSWYTGLTQHGKVSL-SFPPGQGVPLNANST
C19 ----------KPRPAPNNTVSWYTGLTQHGKVPL-SFPPGQGVPLNANST
*:: : . : . :.** .
C1 RDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG
C2 PDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG
C3 ANQQVGYWSEQTR-WKMQKGERVEKPSFWHFYFLGTGPHADAKFRERIQG
C4 PDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG
C5 ANQQVGYWSEQTR-WKMQKGERVEKPSFWHFYFLGTGPHADAKFRERIQG
C6 PVYNHGYWLRTQRSFQKG-GKLVQANPRWYFYYTGTGRYGDMRYGTKNPD
C7 KDERIGYWNEQKR-WRMRKGQRIDLPSKWHFYFLGTGPHKEASFRQRLDG
C8 KEQQIGYWNMQAR-WRMVKGVRKDLDPKWHFYYLGTGPHADAPFRQRLEG
C9 KSQQIGYWNMQPR-WRMVKGQRKDLTPKWHFYYLGTGPHAEAPFRQKLDG
C10 KSQQIGYWNMQPR-WRMVKGQRKDLTPKWHFYYLGTGPHAEAPFRQKLDG
C11 PTYEHGYWLRTQRSFQKG-GKQVLANPRWYFYYTGTGRFGDLRFGTKNPD
C12 ITYQHGYWLRRQRTFNKG-GKQVQANPRWFFYYTGTGPYEGLRYGSRNND
C13 ITYQHGYWLRRQRTFNKG-GKQVQANPRWFFYYTGTGPYEGLRYGSRNND
C14 PTFQHGYWLFRQRSFQKG-GKQVMANPRWYFYYTGTGPYEGLRYGSKSND
C15 TAQNAGYWRRQDRKINTGNGVK-QLSPRWFFYYTGTGPEANLPFRSVKDG
C16 TDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG
C17 RDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG
C18 PAQNAGYWRRQDRKINTGNGTK-SLAPRWYFYYTGTGPEANLPFRAVKDG
C19 PAQNAGYWRRQDRKINTGNGTK-QLAPRWFFYYTGTGPEANLPFRAVKDG
. **: * . * . *.**: *** : .
C1 IVWVAIEGALNTPKDHIGTRNPNNNAAIV---LQLPQGTTLP-KGFYAEG
C2 IVWVATEGALNTPKDHIGTRNPNNNAATV---LQLPQGTTLP-KGFYAEG
C3 VVWVSKANADLKP-TDLGTRSKARSLIIPKFDIELPDDIEIV-DKSSAPN
C4 IVWVATEGALNTPKDHIGTRNPNNNAATV---LQLPQGTTLP-KGFYAEG
C5 VVWVSKANADLKP-TDLGTRSKARSLITPKFDIELPDDIEIV-DKSSAPN
C6 LIWVGEEGANVNRVGDMGTRNPNNDGAIS---VQLHDG--IP-KGFYAEG
C7 VYWVAVNGAKTQP-TSLGSRKKSAAMMVPQFSVSLPSNIQVQTENASAPA
C8 VFWVAVQGSKTEP-TGLGVRKRNAPLLKPQFSFKLPVNVEIQEDSASRPN
C9 VFWVAVQGSDTQP-TGLGVRKRNQPLIKPQFAVKLPANIEIQEENASKPN
C10 VFWVAVQGSDTQP-TGLGVRKRNQPLIKPQFAVKLPANIEIQEENASKPN
C11 IVWVGQEGANINRLGDMGTRNPSNDSAIP---VQLTGG--IP-KGFYAEG
C12 IIWVGNEGANVNRLGDMGTRNPANDAGIP---VQLAEG--IP-KGFYAEG
C13 IIWVGNEGANVNRLGDMGTRNPANDAGIP---VQLAEG--IP-KGFYAEG
C14 LIWVGNEGANVNRIGDMGTRNPANDAGLV---VQLADG--IP-KGFYAEG
C15 IVWVYEEGATDAP-SVFGTRNPANDAAIV---CQFAPGTLIP-KNFHIEG
C16 IVWVATEGALNTPKDHIGTRNPNNNAAIV---LQLPQGTTLP-KGFYAEG
C17 IVWVATEGALNTPKDHIGTRNPNNNAAIV---LQLPQGTTLP-KGFYAEG
C18 IIWVHEDGATDAP-STFGTRNPNNDAAIV---TQFAPGTKLP-KNFHIEG
C19 IVWVHEEGATDAP-STFGTRNPNNDAAIV---TQFAPGTKLP-KNFHIEG
: ** .: :* *. .: . : .
C1 SRSGSQASSR-----SSSRSRGNSRTSTPG--------------------
C2 SRGGSQASSR-----SSSRSRGNSRNSTPG--------------------
C3 SRGNSRSQSRGAKSGSKSRGNSQTRDNSKS-RDNSNNRGKSQSRNNSRSR
C4 SRGGSQASSR-----SSSRSRGNSRNSTPG--------------------
C5 SRGNSRSQSRGAKSGSKSRGNSQTRDNSKS-RDNSNNRGKSQSRNNSRSR
C6 RNSRSNSRNS-----SRNSSRASSQGNSRA--------------------
C7 SRNQSQNR-------SQSANRSQSRGPNQNVNQNQ----------NTNGN
C8 SRNPSSNRDR-----SQSGNRSASSGPKQGNSQNQ---NNSSQGNNSNNQ
C9 SRNPSTNRDR-----SQSGNRSASRGPQQGNTQNQNQNNNSSKGNQNNNQ
C10 SRNPSTNRDR-----SQSGNRSASRGPQQGNTQNQNQNNNSSKGNQNNNQ
C11 RGSRGNSRSS-----SRNSSRASSRGNSRA--------------------
C12 RNSRGNSRNS-----SRSSSRGSSNANSRN--------------------
C13 RNSRGNSRNS-----SRSSSRGSSNANSRN--------------------
C14 RNSRGNSRNS-----SRSSSRGSSNANSRN--------------------
C15 TGGNSQSSSR-----ASSNSRNSSRSNSRG----------------GRST
C16 SRSGSQASSR-----SSSRSRGNSRTSTPG--------------------
C17 SRNGSQASSR-----SSSRSRGNSRTSTPG--------------------
C18 TGGNSQSSSR-----ASSASRNSSRSNSRG----------------SRSG
C19 TGGNSQSSSR-----ASSASRGSSRSSSRG----------------ARSG
. . : . .. :
C1 -SSRGNSPARVASGGGE----TALALLLLDRLNQL---------ESKVSG
C2 -SSRGNSPARMASGGGE----TALALLLLDRLNQL---------ESKVSG
C3 GQQRNNNQQRQGSGNAGNNT-ADLAAAIVLALEKAGLARDT---EKAPKK
C4 -SSRGNSPARMAIGGGE----TALALLLLDRLNQL---------ESKVSG
C5 GQQRNNNQQRQGSGNAGNNT-ADLAAAIVLALEKAGLARDT---EKAPKK
C6 -GSRNASPGRNAPNVASGN--EPWMAYLVQKLEAL---------ENKVNG
C7 QRARSQSRNRGSNNNQPQNQ-VDIVAAVKAALQQLGVGNQNQGGTGKKSK
C8 QRSRNNSKSRGQNNQSNNSQ-ADIVAAVKQALKELGVSPQEK--KNKQKG
C9 QRSRNNSKSRSQNNSQPQNQQVDIVAAVKQALKELGVSPQEK--KQKQKG
C10 QRSRNNSKSRSQNNSQPQNQQVDIVAAVKQALKELGVSPQEK--KQKQKG
C11 -GSRGASPGRPAATPSA----EPWMAYLVQKLEKL---------ESQVNG
C12 -QSRSNSPGRGSAPPSGG---EPWMAYLIQKLENL---------EQRVDG
C13 -QSRSNSPGRGSAPPSGG---EPWMAYLIQKLENL---------EQRVDG
C14 -QSRSNSPGRGSAPPSGS---EPWMAYLIQKLENL---------EQRVDG
C15 SNSRGTSPVSHGVGSAESLAALPLLLDLQKRLADL------------ESG
C16 -SSRGNSPARVASGGGE----TALALLLLDRLNQL---------ESKVSG
C17 -SSRGNSPARVASGGGE----TALALLLLDRLNQL---------ESKVSG
C18 NSSRGTSPGPSGVGAVGG---EMLYLDLLNRLQAL------------ESG
C19 NSSRSASPGPAGIGAVGGDASSILYLSLLKRLEDL------------EAG
*. . : *
C1 KGQ-QQQGQTVTKKSASEASKKPRQ-------KRTATKQYNVTQAFGRRG
C2 KG--QQQGQTVTKKSAAEASKKPRQ-------KRTATKQYNVTQAFGRRG
C3 ESPNNNKKQKSRASSPAPAQSKNTDQLTKVVWKRVPDPSCNVKQCF---G
C4 KG--QQQGQTVTKKSAAEASKKPRQ-------KRTATKQYNVTQAFGRRG
C5 ESPNNNKKQKSRASSPAPAQSKNTDQLTKVVWKRMPDPSCNVKQCF---G
C6 PKE-TKKPVQVTKNEAAANAKKLRH-------KRTPHKGSGVTTNYGRRG
C7 SNSGVNTPKEQRAKSPAKTPPVQRKQMERPVWKRVPNSSENVTACF---G
C8 STSGNNTPKEQRSKSPAPSPNTQRKQIERPVWKRVPTSAEDVTVCF---G
C9 NTSGNNTPKEQRAKSPARSPSSPRKQLERPVWKRVPTEAENVTQCF---G
C10 NTSGNNTPKEQRAKSPARSPASPRKQLERPVWKRVPTEAENVTQCF---G
C11 TKPVTKNPLQVTKNEAAANAKKLRH-------KRTAHKGSGVTMNYGRRG
C12 KKS-DKQPVKVTKNVASENAKKLRH-------KRTAHKGSNATQNYGRRG
C13 KKS-DKQPVKVTKNVASENAKKLRH-------KRTAHKGSNATQNYGRRG
C14 KKS-DKQPVKVTKNVASENAKKLRH-------KRTAHKGSNVTQNYGRRG
C15 K---SKQPKVVTKKDASAAKNKMRH-------KRVATKNFNVTQAFGLRG
C16 KGQ-QQQGQTVTKKSASEASKKPRQ-------KRTATKQYNVTQAFGRRG
C17 KGQ-QQQGQTVTKKSASEASKKPRQ-------KRTATKQYNVTQAFGRRG
C18 KTK-QAQPKVITKKDAVAAKNKMRH-------KRVATKGFNMVQAFGLRG
C19 KS--KSAPKVVTKKDAAAAKNKMRH-------KRVATKSFNMVQAFGRRG
. . . ** . . : *
C1 PDQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG
C2 PEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG
C3 PRSTYQNFGDEDAVEKGVRAKHYPSWAELTPTTAALLFGGEVMTVEDGED
C4 PEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG
C5 PRSTYQNFGDEEAVEKGVRAKHYPSWAELTPNTAALLFGGEVMTVEDGED
C6 PGDLEGNFGDLNMLKLGTDDSRFPAAAQMAPNVASFLFMSHFSVREENDA
C7 PRDAVHNFGDSDVVHHGTDAKHWPQLAELIPTPAALAFGSEISTTEVGDK
C8 PRDTQQNFGDQDLVRHGVDAKHYPQLAEFVPGTAALLFGGEVSTRESGED
C9 PRDTLRNFGDRELTLRGVEAKNYPQIAEFVPTPAALLFGGEVSTREAGED
C10 PRDTLRNFGDRELTLRGVEAKNYPQIAEFVPTPAALLFGGEVSTREAGED
C11 PGDLEGNFGDLDMLKLGTDDPRFAAAAQMAPNVSSFLFMSHLSTREEGDA
C12 PGNLEGNFGDQEFLKLGTDDPRFPVVAQMAPNTSSFVFMSHFTPRYEADA
C13 PGNLEGNFGDQEFLKLGTDDPRFPVVAQMAPNTSSFVFMSHFTPRYEADA
C14 PGNLEGNFGDQDFLKLGTDDPRFPVVAQMAPNTSSFVFMSQFTPRYESDA
C15 PGPLQGNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLTHQSND
C16 PDQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG
C17 PDQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG
C18 PGDLQGNFGDLQLNKLGTEDPRWPQIAELAPSASAFIGMSQFKLTHQSND
C19 PGDLQGNFGDLQLNKLGTEDPRWPQIAELAPSASAFMGMSQFKLTHQSND
* **** : *. .:. *:: * ::: ... .
C1 T------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK
C2 T------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK
C3 I------VIQYTYQMRVPKTTPALQTFL----PQVSAFAN-----SGGDD
C4 T------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK
C5 I------VIQYTYQMRVPKTTPALQTFL----PQVSAFAN-----ASGDD
C6 L------WLHYKGAIKLPKDDPNYDQWTKILGENLNAYKNFPPVEPKKDK
C7 V------EITYTYKMKVDKADKNLPAFL----QQVSAYAQ-----P----
C8 V------EITFHYKLKVKKSDKNLPLFL----QQVSAYAL-----P----
C9 V------EITFHYKMKVKKDDKNLPLFL----QQVSAYAL-----P----
C10 V------EITFHYKMKVKKDDKNLPLFL----QQVSAYAL-----P----
C11 M------WLHYKGAIKLPKDDPNYDQWTKILAENLNAYRDFPPPAPKKDK
C12 L------WLDYTGSIKLPRDDPNFPQWEKLLAENIDAYKSFPPPKPKSDK
C13 L------WLDYTGSIKLPRDDPNFPQWEKLLAENIDAYKSFPPPKPKSDK
C14 L------WLDYTGSIKLPRDDPNFPQWEKLLAENLDAYKSFPPPKPKSDK
C15 DKGEPIYFLSYSGAIKLDPKNPNYKKWLELLEANIDAYKTF----PKKER
C16 T------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK
C17 T------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK
C18 TDGAPVYFLRYSGAIKLDPKNPNYNKWLELIEQNVDAYKTF----PKKEK
C19 ADGSPVYFLRYSGAIKLDPKNPNYQKWMELLEANIDAYKSF----PVKEK
: : ::: ::.*: .
C1 KKKTDEA-------------------------------------------
C2 KKKTDEA-------------------------------------------
C3 ASESGQD------------------------------------MPVVTSA
C4 KKKTDEA-------------------------------------------
C5 ESESGQE------------------------------------MPVVTSA
C6 KKKEEAS--VEVAVYEDAATGTDQPIVQKIWVKDDGVQTDDEWIGGDDTV
C7 --------------------------------------------------
C8 --------------------------------------------------
C9 --------------------------------------------------
C10 --------------------------------------------------
C11 KKKEETT--QETVIFEDASTGTDQP-VVKVWVKDQDAQTDDEWLGGDETV
C12 KKKSDKSDSAAGPSEDLQMQVVDPSGVQRIYMKDAADQTDDEWL-QDDTI
C13 KKKSDKSDSAAGPSEDLQMQVVDPSGVQRIYMKDAADQTDDEWL-QDDTI
C14 KKKSDKSDSATGPSADLQMQVVDPSGVQRIYMKDAADQTDDEWL-QDDTI
C15 KPKTTED---------------------------------GASASSSASQ
C16 KKKTDEA-------------------------------------------
C17 KKKTDEA-------------------------------------------
C18 KQKAPKE-------------------------------------------
C19 KQKADDN-----------------------------KQDSTEDSGDLFAE
C1 ----QPLPQR-KKLPTVTLLPAADMDD---FSRQLQNSMSGASADSTQA
C2 ----QPLPQRQKKQPIVTLLPAADMDD---FSRQLQNSMSGASADSTQA
C3 AESAAPAPASTPKLNPRAETFVPPKVDPNYFAGMKVEIMNKTISDDSTV
C4 ----QPLPQRQKKQPIVTLLPAADMDD---FSRQLQNSMSGASADSTQA
C5 AESAAPAPAPTPKLNPKAETFVPPKVDPNYFAGMKVEIMNKTISDDSTV
C6 YEEEDDKPKAQRRHKKRASTASR--VT----------VADPTNLANERS
C7 ----SQANQISSQLNPVAPVFTPGMDD-------SVEIIDQVFDTDV--
C8 ----SQAPNIPSQLNPIAPDFTPGFEM----VNETVEIIDQVYDTPDA-
C9 ----SQAPNVPSQLNPVAPDFTPSGVE---MVNETVEIIDQVYDSFDA-
C10 ----SQAPNVPSQLNPVAPDFTPSGVE---MVNETVEIIDQVYDSFDA-
C11 YEEEDDRPKTQRRHKKRGSTASR--VT----------IADPTNAGAERS
C12 YEDENDKPKAQRRQSIKKRNATHQRHV----------SIDGAAQSSA--
C13 YEDENDKPKAQRRQSIKKRNATHQRHV----------SIDGAAQSSA--
C14 YEDENDKPKAQRRQSIKKRNAQRHV------------SIDGSAQSSA--
C15 MEDVDAKPQRKPKSRVAGSITMRSGSS--------PALQDVNFDSEA--
C16 ----QPLPQR-KKQPTVTLLPAADMDD---FSRQLQNSMSGASADSTQA
C17 ----QPLPQRQKKQPTVTLLPAADMDD---FSRQLQNSMSGASADSTQA
C18 EPSDQMNVQPPKEQRVQGSITQRSRTP-------RPSVQPGPMTDVNTD
C19 VVASAMASQSQPQRAPKGSITQRSRAP-----RAPVSQMEDVNQTDDRQ
.
-- Starting log on Thu Oct 27 00:13:24 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus.result/gapped_alignment/codeml,JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 19 taxa and 1647 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C1
Taxon 2 -> C10
Taxon 3 -> C11
Taxon 4 -> C12
Taxon 5 -> C13
Taxon 6 -> C14
Taxon 7 -> C15
Taxon 8 -> C16
Taxon 9 -> C17
Taxon 10 -> C18
Taxon 11 -> C19
Taxon 12 -> C2
Taxon 13 -> C3
Taxon 14 -> C4
Taxon 15 -> C5
Taxon 16 -> C6
Taxon 17 -> C7
Taxon 18 -> C8
Taxon 19 -> C9
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1666829606
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 437549676
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 2546421544
Seed = 946131120
Swapseed = 1666829606
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 254 unique site patterns
Division 2 has 229 unique site patterns
Division 3 has 309 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -23361.678083 -- 59.622190
Chain 2 -- -21260.990951 -- 59.622190
Chain 3 -- -22789.964434 -- 59.622190
Chain 4 -- -23015.744704 -- 59.622190
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -23233.366099 -- 59.622190
Chain 2 -- -24476.494533 -- 59.622190
Chain 3 -- -23789.933111 -- 59.622190
Chain 4 -- -22746.117851 -- 59.622190
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-23361.678] (-21260.991) (-22789.964) (-23015.745) * [-23233.366] (-24476.495) (-23789.933) (-22746.118)
1000 -- [-10260.760] (-10272.031) (-10276.327) (-10265.595) * (-10378.333) (-10266.640) (-10266.738) [-10238.553] -- 0:49:57
2000 -- [-10134.349] (-10130.498) (-10118.963) (-10173.020) * (-10146.159) (-10134.775) [-10125.656] (-10119.501) -- 0:49:54
3000 -- [-10114.660] (-10119.023) (-10126.631) (-10150.516) * [-10114.897] (-10123.728) (-10131.632) (-10126.426) -- 0:49:51
4000 -- (-10109.834) (-10106.133) [-10111.419] (-10116.411) * (-10116.746) (-10111.725) [-10115.594] (-10113.409) -- 0:49:48
5000 -- (-10109.762) (-10106.807) (-10112.897) [-10117.851] * (-10111.109) [-10107.228] (-10114.394) (-10112.673) -- 0:49:45
Average standard deviation of split frequencies: 0.015713
6000 -- [-10101.040] (-10107.294) (-10110.427) (-10104.741) * (-10118.205) (-10105.998) [-10106.660] (-10109.364) -- 0:52:27
7000 -- (-10097.770) (-10115.107) [-10105.999] (-10108.623) * (-10115.976) (-10109.849) (-10113.239) [-10099.292] -- 0:52:00
8000 -- (-10106.376) (-10107.968) (-10114.200) [-10113.944] * (-10123.913) (-10106.018) [-10102.263] (-10108.162) -- 0:51:40
9000 -- (-10105.623) [-10109.873] (-10107.344) (-10105.529) * (-10119.959) [-10099.369] (-10104.863) (-10120.609) -- 0:51:23
10000 -- (-10118.431) (-10106.221) (-10108.364) [-10101.424] * (-10110.890) (-10118.413) (-10103.514) [-10117.822] -- 0:51:09
Average standard deviation of split frequencies: 0.007366
11000 -- (-10117.374) (-10109.539) [-10097.954] (-10112.485) * (-10115.288) (-10111.686) [-10113.829] (-10109.816) -- 0:50:56
12000 -- (-10121.258) (-10105.650) [-10107.526] (-10108.328) * (-10107.576) (-10118.649) [-10104.619] (-10107.944) -- 0:50:46
13000 -- (-10103.311) (-10119.080) [-10113.631] (-10107.210) * (-10109.265) (-10107.858) (-10117.182) [-10104.685] -- 0:50:36
14000 -- (-10106.979) (-10125.143) (-10110.752) [-10101.139] * [-10105.211] (-10125.090) (-10126.719) (-10106.579) -- 0:50:28
15000 -- (-10121.737) (-10111.825) (-10107.777) [-10105.867] * (-10121.356) [-10108.841] (-10116.449) (-10117.407) -- 0:51:26
Average standard deviation of split frequencies: 0.013095
16000 -- (-10108.933) (-10117.380) [-10103.977] (-10109.305) * [-10100.167] (-10115.163) (-10106.996) (-10110.357) -- 0:51:15
17000 -- [-10113.811] (-10111.795) (-10098.451) (-10108.216) * (-10111.877) (-10121.135) (-10131.224) [-10103.858] -- 0:51:04
18000 -- (-10113.691) (-10107.806) [-10102.336] (-10111.049) * (-10111.375) (-10110.065) [-10123.151] (-10112.560) -- 0:50:55
19000 -- (-10110.022) (-10117.888) [-10106.388] (-10104.315) * (-10118.375) [-10096.839] (-10103.244) (-10116.333) -- 0:50:46
20000 -- (-10124.151) (-10102.417) (-10119.947) [-10110.476] * (-10116.078) [-10099.676] (-10113.258) (-10114.230) -- 0:50:38
Average standard deviation of split frequencies: 0.022810
21000 -- [-10117.212] (-10097.213) (-10108.868) (-10121.735) * (-10117.620) [-10107.068] (-10114.944) (-10127.383) -- 0:50:30
22000 -- [-10113.241] (-10112.632) (-10113.961) (-10106.911) * (-10116.860) [-10103.927] (-10110.903) (-10115.035) -- 0:50:22
23000 -- (-10104.660) (-10115.906) [-10102.280] (-10108.095) * (-10104.657) [-10094.279] (-10105.312) (-10114.838) -- 0:50:15
24000 -- (-10099.167) (-10103.500) [-10105.533] (-10103.198) * (-10112.871) [-10112.099] (-10128.937) (-10109.585) -- 0:50:09
25000 -- (-10106.219) (-10111.733) [-10103.445] (-10124.815) * [-10111.980] (-10129.445) (-10119.143) (-10105.383) -- 0:50:03
Average standard deviation of split frequencies: 0.028204
26000 -- [-10108.035] (-10127.885) (-10110.740) (-10122.995) * (-10111.352) [-10106.542] (-10112.339) (-10126.455) -- 0:49:56
27000 -- [-10099.451] (-10108.352) (-10117.678) (-10116.332) * (-10099.188) (-10099.265) (-10120.317) [-10117.240] -- 0:49:51
28000 -- (-10113.266) (-10110.146) [-10109.928] (-10116.198) * (-10110.733) [-10112.373] (-10110.044) (-10115.135) -- 0:49:45
29000 -- [-10105.850] (-10113.681) (-10111.492) (-10103.151) * (-10129.554) (-10115.374) [-10111.969] (-10108.822) -- 0:49:39
30000 -- (-10109.037) [-10108.753] (-10106.930) (-10116.453) * (-10114.011) (-10119.494) [-10108.624] (-10114.715) -- 0:50:07
Average standard deviation of split frequencies: 0.032452
31000 -- [-10101.313] (-10101.507) (-10111.653) (-10114.121) * (-10119.950) [-10098.725] (-10105.252) (-10107.353) -- 0:50:00
32000 -- (-10117.896) [-10105.108] (-10118.099) (-10102.042) * (-10111.314) (-10107.629) (-10101.373) [-10112.291] -- 0:49:54
33000 -- (-10105.931) [-10102.155] (-10113.417) (-10110.759) * (-10113.286) (-10113.001) (-10111.410) [-10106.456] -- 0:49:48
34000 -- [-10105.309] (-10122.518) (-10115.893) (-10120.735) * [-10102.510] (-10111.073) (-10120.884) (-10111.109) -- 0:49:43
35000 -- (-10099.393) [-10110.977] (-10112.706) (-10099.708) * (-10100.811) (-10102.537) [-10103.918] (-10102.652) -- 0:49:37
Average standard deviation of split frequencies: 0.038556
36000 -- (-10107.516) (-10106.634) [-10113.804] (-10119.846) * [-10105.354] (-10118.373) (-10116.664) (-10109.375) -- 0:49:32
37000 -- (-10106.817) (-10116.171) [-10110.148] (-10114.381) * (-10105.666) [-10113.025] (-10119.498) (-10106.409) -- 0:49:27
38000 -- [-10110.281] (-10111.266) (-10107.996) (-10117.230) * (-10107.247) (-10115.520) [-10112.133] (-10106.338) -- 0:49:21
39000 -- (-10115.917) [-10108.335] (-10099.742) (-10109.377) * (-10113.938) (-10121.601) (-10120.986) [-10104.881] -- 0:49:16
40000 -- (-10109.173) (-10105.968) (-10101.289) [-10103.305] * (-10113.745) [-10109.627] (-10110.971) (-10106.036) -- 0:49:36
Average standard deviation of split frequencies: 0.036064
41000 -- (-10114.085) [-10102.346] (-10112.798) (-10113.163) * (-10100.648) (-10115.785) (-10110.635) [-10106.649] -- 0:49:30
42000 -- (-10108.734) [-10118.041] (-10119.428) (-10110.566) * (-10108.323) [-10099.935] (-10112.541) (-10114.580) -- 0:49:25
43000 -- (-10106.820) [-10103.175] (-10108.270) (-10111.344) * (-10116.563) [-10109.169] (-10114.919) (-10100.903) -- 0:49:20
44000 -- (-10106.675) [-10107.736] (-10107.293) (-10111.258) * (-10103.782) (-10118.608) (-10114.344) [-10102.128] -- 0:49:14
45000 -- (-10107.875) [-10110.537] (-10111.003) (-10109.658) * (-10106.409) [-10116.505] (-10118.030) (-10107.544) -- 0:49:09
Average standard deviation of split frequencies: 0.029605
46000 -- (-10113.060) (-10108.707) [-10104.725] (-10111.827) * (-10107.501) [-10111.230] (-10109.869) (-10105.616) -- 0:49:04
47000 -- [-10102.444] (-10108.185) (-10114.577) (-10125.931) * (-10105.428) [-10098.245] (-10108.335) (-10111.132) -- 0:49:00
48000 -- [-10106.061] (-10110.825) (-10116.684) (-10118.527) * (-10117.023) [-10109.664] (-10109.013) (-10115.469) -- 0:48:55
49000 -- (-10108.922) [-10109.345] (-10110.752) (-10106.961) * [-10114.473] (-10112.264) (-10110.435) (-10107.047) -- 0:48:50
50000 -- (-10111.094) (-10109.071) (-10108.339) [-10110.536] * [-10101.646] (-10119.887) (-10110.385) (-10107.258) -- 0:48:46
Average standard deviation of split frequencies: 0.029463
51000 -- [-10102.992] (-10106.906) (-10117.423) (-10112.498) * (-10111.950) (-10119.197) [-10116.560] (-10116.898) -- 0:48:41
52000 -- (-10103.313) [-10104.172] (-10115.056) (-10121.689) * [-10109.584] (-10106.496) (-10114.809) (-10106.895) -- 0:48:36
53000 -- [-10102.032] (-10109.816) (-10107.476) (-10104.060) * (-10110.323) (-10111.209) [-10121.127] (-10104.564) -- 0:48:50
54000 -- [-10098.226] (-10107.280) (-10118.401) (-10108.502) * [-10110.140] (-10113.866) (-10119.606) (-10107.508) -- 0:48:45
55000 -- (-10120.202) [-10101.849] (-10118.842) (-10104.834) * (-10123.073) [-10117.061] (-10116.983) (-10119.999) -- 0:48:40
Average standard deviation of split frequencies: 0.028060
56000 -- (-10114.191) (-10111.440) [-10101.977] (-10111.547) * (-10113.806) (-10102.915) (-10115.800) [-10106.607] -- 0:48:36
57000 -- (-10107.148) (-10113.867) [-10110.064] (-10111.851) * (-10123.262) (-10106.649) (-10121.026) [-10108.551] -- 0:48:31
58000 -- (-10121.361) (-10106.853) [-10115.930] (-10104.940) * (-10113.696) (-10115.718) [-10105.446] (-10104.772) -- 0:48:27
59000 -- (-10113.573) (-10119.543) (-10106.295) [-10104.938] * (-10106.461) (-10121.626) [-10101.497] (-10112.970) -- 0:48:22
60000 -- (-10104.665) (-10108.297) (-10121.016) [-10116.412] * (-10110.735) (-10121.296) (-10108.298) [-10108.063] -- 0:48:18
Average standard deviation of split frequencies: 0.026765
61000 -- (-10104.796) [-10119.913] (-10119.142) (-10114.459) * (-10112.889) (-10125.117) (-10116.121) [-10104.780] -- 0:48:13
62000 -- (-10114.124) [-10109.915] (-10121.773) (-10108.149) * (-10113.049) (-10116.408) (-10114.972) [-10116.230] -- 0:48:09
63000 -- [-10102.864] (-10109.002) (-10125.079) (-10105.142) * (-10111.796) (-10110.032) (-10107.353) [-10111.433] -- 0:48:05
64000 -- (-10106.549) (-10110.215) [-10112.351] (-10115.820) * (-10114.920) (-10101.547) [-10116.545] (-10116.712) -- 0:48:15
65000 -- (-10107.580) [-10105.157] (-10108.454) (-10123.108) * (-10106.781) (-10117.303) (-10108.357) [-10111.272] -- 0:48:11
Average standard deviation of split frequencies: 0.026189
66000 -- (-10114.040) (-10106.443) (-10104.452) [-10100.828] * [-10113.935] (-10123.021) (-10116.149) (-10102.442) -- 0:48:06
67000 -- (-10108.932) (-10113.888) [-10109.792] (-10119.570) * (-10103.988) [-10108.651] (-10104.362) (-10115.847) -- 0:48:02
68000 -- (-10108.632) (-10120.764) (-10110.060) [-10107.838] * (-10098.918) (-10109.000) [-10104.093] (-10099.571) -- 0:47:58
69000 -- [-10107.794] (-10118.022) (-10104.333) (-10109.906) * (-10104.984) [-10118.005] (-10114.482) (-10111.856) -- 0:47:53
70000 -- (-10107.354) (-10111.607) [-10114.898] (-10112.590) * (-10116.629) [-10105.499] (-10110.151) (-10107.567) -- 0:47:49
Average standard deviation of split frequencies: 0.022977
71000 -- [-10103.808] (-10107.079) (-10100.104) (-10110.807) * (-10115.255) (-10103.254) (-10113.893) [-10103.345] -- 0:47:45
72000 -- [-10102.170] (-10103.084) (-10115.688) (-10108.110) * (-10107.696) (-10115.580) (-10099.034) [-10105.280] -- 0:47:41
73000 -- (-10113.261) [-10100.441] (-10119.496) (-10102.743) * (-10111.674) (-10113.975) [-10109.560] (-10119.028) -- 0:47:37
74000 -- (-10114.254) [-10114.311] (-10116.201) (-10111.097) * (-10100.911) (-10124.756) [-10104.276] (-10112.480) -- 0:47:33
75000 -- (-10119.806) (-10122.872) [-10103.117] (-10105.651) * (-10111.036) (-10104.852) [-10100.627] (-10114.122) -- 0:47:29
Average standard deviation of split frequencies: 0.022399
76000 -- (-10095.387) (-10118.319) (-10110.648) [-10109.646] * (-10116.861) [-10109.623] (-10117.802) (-10110.138) -- 0:47:37
77000 -- (-10104.593) [-10103.248] (-10115.507) (-10111.780) * (-10122.535) (-10108.983) [-10110.337] (-10112.988) -- 0:47:32
78000 -- (-10102.880) [-10106.675] (-10104.278) (-10113.065) * (-10112.032) (-10103.994) (-10114.196) [-10107.272] -- 0:47:28
79000 -- (-10112.539) (-10104.889) (-10104.853) [-10112.928] * (-10117.049) [-10110.294] (-10116.762) (-10105.265) -- 0:47:24
80000 -- (-10113.424) [-10107.520] (-10111.650) (-10119.721) * (-10117.192) [-10105.303] (-10117.051) (-10110.491) -- 0:47:20
Average standard deviation of split frequencies: 0.020454
81000 -- (-10111.614) [-10114.902] (-10105.833) (-10107.578) * (-10116.517) (-10111.378) (-10115.495) [-10105.391] -- 0:47:16
82000 -- [-10108.046] (-10121.255) (-10116.990) (-10112.485) * (-10108.392) (-10127.285) (-10110.688) [-10111.351] -- 0:47:12
83000 -- (-10111.506) (-10110.144) [-10109.592] (-10108.569) * [-10109.762] (-10113.095) (-10105.809) (-10106.884) -- 0:47:08
84000 -- (-10117.633) (-10105.058) (-10119.762) [-10103.450] * (-10113.764) [-10106.255] (-10118.930) (-10105.315) -- 0:47:04
85000 -- (-10112.636) (-10117.212) [-10110.125] (-10117.172) * (-10119.104) (-10125.108) [-10106.391] (-10118.003) -- 0:47:00
Average standard deviation of split frequencies: 0.017358
86000 -- [-10109.189] (-10115.561) (-10105.534) (-10117.183) * (-10109.883) (-10109.763) [-10105.667] (-10110.979) -- 0:46:56
87000 -- (-10118.172) (-10122.016) (-10113.119) [-10110.384] * (-10114.741) (-10112.497) (-10108.194) [-10102.746] -- 0:46:52
88000 -- (-10120.899) (-10123.222) (-10118.212) [-10112.880] * (-10114.813) [-10105.311] (-10116.091) (-10117.731) -- 0:46:48
89000 -- (-10109.603) [-10122.127] (-10106.336) (-10108.015) * (-10115.459) [-10107.797] (-10115.084) (-10121.105) -- 0:46:44
90000 -- (-10103.518) (-10102.006) (-10109.521) [-10104.689] * (-10110.611) (-10105.457) [-10107.770] (-10114.734) -- 0:46:50
Average standard deviation of split frequencies: 0.015309
91000 -- [-10107.279] (-10104.213) (-10110.611) (-10104.720) * (-10108.556) (-10105.434) (-10113.012) [-10113.042] -- 0:46:46
92000 -- (-10114.904) (-10107.231) [-10109.004] (-10109.347) * (-10104.737) (-10105.381) (-10112.803) [-10103.982] -- 0:46:42
93000 -- (-10103.612) (-10125.157) [-10111.979] (-10099.717) * [-10106.758] (-10103.767) (-10113.109) (-10103.982) -- 0:46:39
94000 -- (-10101.872) (-10119.618) (-10105.190) [-10107.459] * (-10114.629) [-10106.776] (-10111.847) (-10111.521) -- 0:46:35
95000 -- (-10110.517) (-10108.008) (-10111.633) [-10108.030] * [-10112.805] (-10101.766) (-10119.230) (-10116.494) -- 0:46:31
Average standard deviation of split frequencies: 0.015550
96000 -- (-10119.498) (-10105.756) (-10114.732) [-10106.933] * [-10109.545] (-10104.266) (-10114.579) (-10104.160) -- 0:46:27
97000 -- (-10116.739) (-10123.761) [-10123.493] (-10108.414) * (-10121.815) (-10106.293) (-10110.556) [-10110.838] -- 0:46:23
98000 -- (-10109.323) (-10104.751) [-10104.439] (-10106.204) * (-10120.223) [-10102.335] (-10106.938) (-10108.094) -- 0:46:19
99000 -- (-10107.902) [-10100.810] (-10102.108) (-10107.856) * (-10110.854) (-10117.182) [-10103.155] (-10117.884) -- 0:46:15
100000 -- (-10113.410) (-10113.002) [-10098.382] (-10112.250) * [-10101.665] (-10115.584) (-10103.894) (-10101.572) -- 0:46:21
Average standard deviation of split frequencies: 0.014048
101000 -- (-10100.984) (-10117.815) [-10109.286] (-10115.485) * (-10112.043) (-10115.476) [-10095.577] (-10110.455) -- 0:46:17
102000 -- [-10106.334] (-10104.870) (-10101.403) (-10117.292) * (-10102.507) (-10117.394) [-10100.834] (-10110.247) -- 0:46:13
103000 -- [-10108.477] (-10119.184) (-10117.971) (-10125.973) * (-10128.522) (-10110.333) (-10106.973) [-10107.422] -- 0:46:09
104000 -- [-10116.220] (-10113.926) (-10120.001) (-10121.965) * [-10100.186] (-10110.642) (-10112.010) (-10115.814) -- 0:46:05
105000 -- [-10111.880] (-10107.266) (-10121.795) (-10113.129) * [-10107.536] (-10118.930) (-10109.924) (-10103.382) -- 0:46:01
Average standard deviation of split frequencies: 0.010871
106000 -- (-10109.705) (-10103.830) (-10112.890) [-10109.614] * (-10116.043) (-10109.422) (-10123.852) [-10114.684] -- 0:45:57
107000 -- [-10108.422] (-10109.202) (-10111.777) (-10106.635) * (-10107.679) (-10108.661) (-10117.795) [-10112.029] -- 0:45:54
108000 -- (-10110.518) (-10112.040) (-10128.534) [-10108.121] * [-10105.803] (-10109.026) (-10122.821) (-10122.116) -- 0:45:50
109000 -- [-10105.975] (-10112.767) (-10111.546) (-10105.511) * [-10098.986] (-10110.072) (-10115.676) (-10102.775) -- 0:45:46
110000 -- (-10101.996) (-10096.441) (-10109.851) [-10100.228] * [-10105.379] (-10097.346) (-10118.704) (-10123.540) -- 0:45:42
Average standard deviation of split frequencies: 0.011122
111000 -- (-10103.154) (-10103.446) (-10117.653) [-10106.631] * (-10122.559) (-10111.673) (-10119.869) [-10114.578] -- 0:45:39
112000 -- (-10116.189) (-10117.807) (-10123.448) [-10106.756] * (-10126.494) (-10119.577) (-10115.429) [-10100.743] -- 0:45:35
113000 -- (-10133.219) (-10107.471) (-10120.315) [-10116.111] * [-10103.398] (-10109.173) (-10116.599) (-10113.428) -- 0:45:31
114000 -- (-10112.996) [-10100.278] (-10121.517) (-10114.961) * (-10107.408) [-10098.129] (-10106.337) (-10114.321) -- 0:45:35
115000 -- [-10104.978] (-10106.434) (-10113.847) (-10119.339) * (-10109.624) [-10102.531] (-10117.841) (-10110.905) -- 0:45:31
Average standard deviation of split frequencies: 0.011740
116000 -- (-10109.467) (-10110.956) (-10114.471) [-10113.569] * [-10107.044] (-10109.013) (-10107.791) (-10107.663) -- 0:45:28
117000 -- [-10108.270] (-10130.862) (-10115.471) (-10126.633) * (-10113.388) (-10115.742) [-10102.236] (-10108.496) -- 0:45:24
118000 -- (-10107.320) [-10114.102] (-10117.130) (-10116.752) * [-10104.265] (-10114.191) (-10101.575) (-10113.428) -- 0:45:20
119000 -- [-10109.970] (-10117.933) (-10106.369) (-10122.670) * (-10105.653) [-10107.142] (-10104.395) (-10111.295) -- 0:45:17
120000 -- (-10112.741) [-10103.021] (-10119.670) (-10112.996) * (-10105.743) [-10108.848] (-10106.396) (-10113.611) -- 0:45:13
Average standard deviation of split frequencies: 0.009984
121000 -- (-10117.431) [-10106.966] (-10117.155) (-10101.676) * (-10102.003) (-10108.186) (-10102.425) [-10112.837] -- 0:45:09
122000 -- [-10107.028] (-10109.156) (-10115.197) (-10111.306) * [-10111.478] (-10108.510) (-10109.336) (-10121.207) -- 0:45:13
123000 -- (-10112.583) (-10102.545) (-10120.902) [-10109.597] * (-10103.840) [-10104.079] (-10112.017) (-10122.680) -- 0:45:09
124000 -- [-10107.601] (-10105.434) (-10112.813) (-10115.332) * [-10105.982] (-10109.279) (-10112.624) (-10102.831) -- 0:45:05
125000 -- (-10105.111) (-10120.243) (-10106.812) [-10106.625] * [-10103.747] (-10104.937) (-10113.476) (-10114.306) -- 0:45:02
Average standard deviation of split frequencies: 0.009145
126000 -- [-10109.801] (-10112.441) (-10120.372) (-10105.600) * (-10108.055) (-10112.351) [-10112.724] (-10111.144) -- 0:44:58
127000 -- [-10105.048] (-10109.993) (-10118.204) (-10109.335) * (-10110.653) [-10095.990] (-10111.256) (-10110.022) -- 0:44:54
128000 -- (-10101.458) [-10104.023] (-10109.082) (-10108.036) * (-10118.265) (-10110.637) [-10113.231] (-10113.766) -- 0:44:50
129000 -- (-10113.595) [-10106.199] (-10101.955) (-10107.182) * (-10112.912) [-10111.530] (-10116.036) (-10128.740) -- 0:44:47
130000 -- [-10110.743] (-10116.025) (-10105.686) (-10102.450) * (-10109.255) (-10121.888) [-10111.271] (-10106.140) -- 0:44:43
Average standard deviation of split frequencies: 0.008218
131000 -- (-10108.226) (-10109.200) [-10107.598] (-10116.797) * (-10109.979) (-10108.170) [-10103.870] (-10105.434) -- 0:44:39
132000 -- (-10108.335) [-10101.329] (-10125.494) (-10110.729) * [-10110.067] (-10113.081) (-10111.544) (-10114.046) -- 0:44:36
133000 -- [-10109.886] (-10110.608) (-10107.237) (-10106.054) * (-10113.311) (-10118.365) [-10101.258] (-10117.872) -- 0:44:32
134000 -- (-10104.540) [-10104.255] (-10111.573) (-10110.992) * (-10111.846) (-10110.678) (-10109.016) [-10101.567] -- 0:44:29
135000 -- (-10109.790) (-10119.265) [-10106.457] (-10110.874) * [-10112.074] (-10117.302) (-10103.849) (-10114.366) -- 0:44:31
Average standard deviation of split frequencies: 0.008280
136000 -- [-10107.235] (-10116.798) (-10114.948) (-10110.147) * (-10103.454) (-10114.524) (-10124.614) [-10108.149] -- 0:44:28
137000 -- (-10110.143) (-10107.378) [-10117.182] (-10124.966) * [-10101.269] (-10111.006) (-10106.831) (-10106.223) -- 0:44:24
138000 -- (-10111.818) [-10108.448] (-10113.818) (-10127.485) * (-10104.695) (-10113.493) (-10107.479) [-10115.664] -- 0:44:20
139000 -- (-10106.111) (-10109.127) [-10107.132] (-10114.594) * (-10113.166) (-10107.933) [-10112.089] (-10108.603) -- 0:44:17
140000 -- (-10115.923) [-10102.597] (-10113.653) (-10104.743) * (-10119.287) [-10104.597] (-10106.721) (-10124.148) -- 0:44:13
Average standard deviation of split frequencies: 0.008192
141000 -- (-10119.837) (-10121.847) (-10105.074) [-10107.341] * (-10103.179) [-10113.283] (-10107.590) (-10131.109) -- 0:44:10
142000 -- (-10111.680) [-10112.907] (-10111.263) (-10117.838) * [-10097.624] (-10104.123) (-10107.485) (-10115.525) -- 0:44:06
143000 -- (-10101.008) (-10106.742) [-10102.222] (-10112.963) * [-10106.179] (-10116.155) (-10110.053) (-10117.602) -- 0:44:02
144000 -- (-10119.281) (-10107.738) (-10108.824) [-10105.444] * (-10118.010) (-10113.718) [-10105.566] (-10111.771) -- 0:43:59
145000 -- (-10120.958) [-10097.592] (-10098.797) (-10103.789) * (-10108.400) (-10118.051) (-10117.667) [-10104.313] -- 0:43:55
Average standard deviation of split frequencies: 0.007893
146000 -- (-10109.438) (-10105.604) [-10109.838] (-10108.986) * (-10123.239) (-10112.093) (-10109.828) [-10109.005] -- 0:43:58
147000 -- [-10107.988] (-10103.222) (-10114.563) (-10110.989) * (-10112.348) (-10111.446) (-10115.422) [-10105.299] -- 0:43:54
148000 -- [-10101.381] (-10110.006) (-10115.009) (-10119.456) * (-10110.637) (-10117.103) (-10120.122) [-10105.150] -- 0:43:50
149000 -- [-10107.345] (-10120.447) (-10114.346) (-10111.075) * (-10101.153) [-10100.188] (-10100.950) (-10114.883) -- 0:43:47
150000 -- (-10103.441) (-10116.993) (-10101.469) [-10119.337] * (-10120.165) [-10111.650] (-10107.487) (-10107.829) -- 0:43:43
Average standard deviation of split frequencies: 0.008170
151000 -- (-10111.914) (-10111.726) (-10110.345) [-10110.498] * (-10118.522) (-10119.217) (-10107.257) [-10101.897] -- 0:43:40
152000 -- [-10108.639] (-10108.155) (-10109.340) (-10115.510) * (-10109.323) (-10117.625) [-10109.252] (-10128.089) -- 0:43:36
153000 -- (-10108.627) [-10116.384] (-10111.637) (-10102.989) * [-10102.237] (-10106.293) (-10109.324) (-10109.676) -- 0:43:32
154000 -- (-10114.754) (-10099.044) [-10118.261] (-10106.497) * (-10110.577) (-10109.515) [-10101.753] (-10117.848) -- 0:43:29
155000 -- (-10122.003) (-10121.250) (-10119.940) [-10101.381] * [-10115.956] (-10118.374) (-10107.131) (-10107.887) -- 0:43:25
Average standard deviation of split frequencies: 0.007890
156000 -- [-10110.002] (-10105.274) (-10099.539) (-10111.073) * (-10110.307) (-10118.294) (-10118.615) [-10118.463] -- 0:43:22
157000 -- (-10105.146) (-10106.649) (-10112.499) [-10109.578] * (-10097.077) (-10119.281) [-10111.013] (-10106.305) -- 0:43:18
158000 -- (-10101.853) (-10107.828) [-10105.022] (-10113.182) * [-10097.650] (-10116.581) (-10107.126) (-10112.861) -- 0:43:15
159000 -- (-10114.742) (-10105.456) [-10100.780] (-10112.818) * [-10110.787] (-10124.679) (-10106.126) (-10123.165) -- 0:43:17
160000 -- (-10115.608) [-10104.144] (-10103.610) (-10102.816) * (-10110.849) (-10102.795) (-10108.036) [-10104.124] -- 0:43:13
Average standard deviation of split frequencies: 0.007172
161000 -- (-10115.505) (-10106.440) [-10113.433] (-10111.508) * [-10111.922] (-10129.102) (-10109.939) (-10113.097) -- 0:43:09
162000 -- (-10114.056) (-10097.627) [-10117.336] (-10118.770) * (-10095.109) (-10115.172) (-10110.953) [-10105.648] -- 0:43:06
163000 -- (-10119.536) (-10105.539) [-10106.518] (-10108.574) * (-10103.358) (-10118.731) [-10110.596] (-10107.881) -- 0:43:02
164000 -- (-10109.098) (-10116.989) [-10101.018] (-10114.286) * (-10110.277) (-10104.193) [-10107.291] (-10115.978) -- 0:42:59
165000 -- (-10116.153) (-10110.234) [-10106.388] (-10118.272) * (-10113.848) (-10102.304) (-10107.249) [-10111.410] -- 0:42:55
Average standard deviation of split frequencies: 0.006468
166000 -- (-10117.612) (-10114.108) [-10107.165] (-10117.984) * (-10108.772) [-10107.378] (-10121.337) (-10111.172) -- 0:42:52
167000 -- [-10107.290] (-10125.950) (-10105.371) (-10107.678) * (-10103.321) (-10109.046) (-10111.918) [-10107.957] -- 0:42:48
168000 -- [-10096.595] (-10107.432) (-10107.238) (-10112.510) * (-10116.869) (-10112.220) [-10100.918] (-10106.160) -- 0:42:45
169000 -- [-10101.776] (-10118.818) (-10109.283) (-10119.833) * (-10108.081) (-10126.696) [-10101.525] (-10104.376) -- 0:42:41
170000 -- [-10109.539] (-10110.809) (-10103.336) (-10113.646) * [-10119.323] (-10117.776) (-10114.433) (-10111.696) -- 0:42:43
Average standard deviation of split frequencies: 0.005985
171000 -- (-10112.569) [-10112.556] (-10104.800) (-10116.525) * (-10106.303) (-10117.652) (-10117.153) [-10108.098] -- 0:42:39
172000 -- (-10112.536) (-10119.960) (-10103.881) [-10106.848] * [-10115.508] (-10109.825) (-10103.622) (-10118.899) -- 0:42:36
173000 -- (-10107.616) [-10104.869] (-10109.037) (-10114.580) * (-10112.413) [-10104.319] (-10118.998) (-10102.829) -- 0:42:32
174000 -- [-10110.068] (-10110.352) (-10107.876) (-10110.511) * (-10103.273) [-10111.552] (-10117.314) (-10107.646) -- 0:42:29
175000 -- (-10120.374) (-10106.028) [-10109.490] (-10100.561) * (-10102.103) (-10110.738) [-10116.116] (-10109.901) -- 0:42:25
Average standard deviation of split frequencies: 0.005357
176000 -- (-10110.561) [-10106.496] (-10111.754) (-10105.003) * (-10107.536) (-10103.676) [-10110.947] (-10109.850) -- 0:42:22
177000 -- (-10104.338) [-10113.453] (-10103.212) (-10108.720) * (-10115.411) (-10117.533) [-10105.340] (-10110.404) -- 0:42:18
178000 -- (-10123.669) [-10105.861] (-10116.151) (-10106.252) * [-10105.638] (-10121.260) (-10116.503) (-10114.382) -- 0:42:19
179000 -- (-10118.788) (-10111.997) (-10115.415) [-10109.157] * (-10108.732) (-10109.704) (-10102.023) [-10107.741] -- 0:42:16
180000 -- [-10110.305] (-10126.694) (-10113.232) (-10118.448) * (-10108.172) (-10106.760) [-10108.712] (-10106.989) -- 0:42:12
Average standard deviation of split frequencies: 0.004349
181000 -- [-10103.656] (-10123.749) (-10102.596) (-10119.837) * (-10108.515) [-10106.558] (-10106.149) (-10114.399) -- 0:42:09
182000 -- (-10106.903) (-10113.657) (-10112.051) [-10112.696] * (-10121.836) (-10114.468) [-10109.384] (-10123.382) -- 0:42:05
183000 -- [-10120.424] (-10120.825) (-10104.715) (-10115.424) * (-10111.751) (-10107.220) (-10130.052) [-10104.942] -- 0:42:02
184000 -- (-10119.177) (-10115.086) [-10106.133] (-10115.877) * (-10119.326) [-10101.846] (-10113.146) (-10112.989) -- 0:41:58
185000 -- (-10124.484) (-10132.559) [-10112.145] (-10112.864) * (-10113.900) (-10114.221) [-10109.310] (-10100.126) -- 0:41:59
Average standard deviation of split frequencies: 0.004365
186000 -- [-10110.448] (-10119.971) (-10110.059) (-10107.520) * (-10117.456) (-10121.387) (-10121.202) [-10109.282] -- 0:41:56
187000 -- (-10111.050) [-10108.977] (-10111.335) (-10108.253) * (-10120.662) (-10115.667) [-10109.989] (-10105.983) -- 0:41:52
188000 -- (-10109.689) (-10111.064) [-10105.769] (-10118.996) * [-10109.322] (-10115.270) (-10106.840) (-10108.445) -- 0:41:49
189000 -- (-10111.844) (-10115.218) (-10110.884) [-10104.657] * (-10108.163) [-10110.756] (-10112.416) (-10106.318) -- 0:41:45
190000 -- (-10102.401) (-10125.240) [-10104.455] (-10116.920) * (-10111.349) [-10103.062] (-10111.369) (-10107.891) -- 0:41:42
Average standard deviation of split frequencies: 0.005906
191000 -- (-10111.509) [-10113.387] (-10124.971) (-10114.211) * (-10105.025) [-10108.994] (-10112.358) (-10111.004) -- 0:41:39
192000 -- [-10107.598] (-10110.008) (-10116.436) (-10105.898) * (-10107.870) [-10105.098] (-10113.490) (-10113.568) -- 0:41:35
193000 -- [-10118.103] (-10120.024) (-10107.876) (-10107.723) * (-10108.295) (-10112.705) (-10123.384) [-10098.781] -- 0:41:36
194000 -- (-10109.270) (-10115.428) [-10115.025] (-10118.323) * (-10117.427) [-10107.012] (-10114.623) (-10109.578) -- 0:41:32
195000 -- (-10115.248) (-10108.606) [-10106.516] (-10113.187) * [-10119.180] (-10114.231) (-10112.997) (-10119.813) -- 0:41:29
Average standard deviation of split frequencies: 0.006948
196000 -- (-10109.173) (-10107.148) (-10115.859) [-10104.378] * (-10120.400) (-10109.201) [-10107.869] (-10121.779) -- 0:41:25
197000 -- (-10108.418) (-10103.321) [-10112.072] (-10111.430) * (-10121.157) [-10106.902] (-10105.874) (-10109.704) -- 0:41:22
198000 -- (-10096.165) (-10108.789) [-10100.855] (-10119.588) * (-10130.204) [-10100.017] (-10099.903) (-10122.432) -- 0:41:22
199000 -- [-10102.374] (-10108.155) (-10115.415) (-10112.299) * (-10106.829) [-10111.399] (-10108.203) (-10119.268) -- 0:41:19
200000 -- [-10104.537] (-10139.408) (-10110.169) (-10106.874) * (-10105.244) [-10103.740] (-10112.041) (-10113.546) -- 0:41:16
Average standard deviation of split frequencies: 0.007048
201000 -- (-10114.509) (-10117.440) (-10109.647) [-10109.213] * (-10109.965) (-10110.094) [-10103.142] (-10108.293) -- 0:41:12
202000 -- (-10121.874) (-10109.401) (-10120.219) [-10099.056] * (-10122.780) (-10101.763) [-10096.838] (-10109.281) -- 0:41:09
203000 -- (-10119.253) [-10108.860] (-10115.238) (-10108.571) * [-10120.451] (-10107.539) (-10116.274) (-10106.734) -- 0:41:05
204000 -- (-10113.244) [-10101.827] (-10125.086) (-10104.947) * (-10129.171) [-10102.988] (-10109.782) (-10107.137) -- 0:41:02
205000 -- (-10108.770) (-10111.343) (-10116.355) [-10106.956] * [-10115.584] (-10101.232) (-10108.370) (-10108.723) -- 0:40:58
Average standard deviation of split frequencies: 0.005721
206000 -- (-10126.881) (-10114.544) [-10103.581] (-10122.173) * (-10118.037) (-10118.114) (-10110.502) [-10110.770] -- 0:40:59
207000 -- [-10107.551] (-10105.641) (-10106.728) (-10113.026) * [-10110.646] (-10118.186) (-10124.310) (-10109.169) -- 0:40:55
208000 -- (-10129.907) [-10116.262] (-10110.519) (-10118.917) * [-10104.896] (-10116.219) (-10111.751) (-10116.909) -- 0:40:52
209000 -- (-10108.996) [-10112.888] (-10120.008) (-10118.766) * (-10107.131) (-10116.679) [-10105.697] (-10103.412) -- 0:40:48
210000 -- (-10110.542) (-10112.589) [-10111.832] (-10125.540) * [-10122.412] (-10116.617) (-10116.258) (-10102.928) -- 0:40:45
Average standard deviation of split frequencies: 0.005719
211000 -- [-10098.340] (-10100.946) (-10108.319) (-10130.759) * [-10107.244] (-10116.833) (-10107.992) (-10100.905) -- 0:40:41
212000 -- (-10106.882) (-10106.077) (-10104.393) [-10105.730] * [-10118.664] (-10117.705) (-10113.565) (-10113.896) -- 0:40:42
213000 -- [-10107.778] (-10109.444) (-10125.920) (-10115.491) * (-10128.023) (-10114.675) (-10116.264) [-10111.913] -- 0:40:38
214000 -- (-10116.837) [-10111.553] (-10116.231) (-10105.566) * (-10121.955) (-10127.208) (-10112.452) [-10101.945] -- 0:40:35
215000 -- [-10103.703] (-10113.814) (-10107.889) (-10112.573) * [-10112.167] (-10110.333) (-10112.477) (-10110.192) -- 0:40:31
Average standard deviation of split frequencies: 0.004971
216000 -- (-10114.794) [-10114.991] (-10109.899) (-10113.264) * (-10100.633) [-10105.627] (-10110.104) (-10120.141) -- 0:40:28
217000 -- [-10108.731] (-10109.033) (-10106.175) (-10106.943) * [-10103.016] (-10114.179) (-10107.804) (-10121.965) -- 0:40:24
218000 -- (-10113.086) (-10106.918) [-10108.726] (-10109.477) * [-10104.634] (-10110.719) (-10126.130) (-10113.367) -- 0:40:21
219000 -- (-10119.777) (-10102.107) [-10107.315] (-10111.580) * [-10110.365] (-10108.414) (-10114.248) (-10117.632) -- 0:40:17
220000 -- (-10115.039) [-10103.650] (-10116.981) (-10116.900) * (-10106.348) [-10112.547] (-10131.681) (-10120.026) -- 0:40:14
Average standard deviation of split frequencies: 0.004510
221000 -- (-10103.818) (-10105.520) [-10113.770] (-10107.734) * (-10118.593) (-10112.852) [-10110.711] (-10114.851) -- 0:40:14
222000 -- [-10108.798] (-10104.669) (-10113.779) (-10114.000) * [-10107.422] (-10108.967) (-10115.421) (-10116.681) -- 0:40:11
223000 -- (-10107.245) [-10105.910] (-10112.221) (-10106.811) * [-10107.501] (-10115.058) (-10108.162) (-10113.298) -- 0:40:07
224000 -- (-10117.307) (-10108.989) (-10112.907) [-10110.921] * (-10120.063) [-10111.870] (-10104.879) (-10111.116) -- 0:40:04
225000 -- (-10117.170) (-10100.030) [-10105.219] (-10117.463) * [-10111.537] (-10113.843) (-10105.655) (-10125.868) -- 0:40:00
Average standard deviation of split frequencies: 0.004867
226000 -- (-10115.215) (-10109.858) [-10100.402] (-10108.777) * (-10108.587) (-10115.884) [-10099.390] (-10129.296) -- 0:40:00
227000 -- (-10117.623) [-10111.599] (-10112.048) (-10117.528) * (-10113.189) (-10110.832) [-10097.185] (-10116.397) -- 0:39:57
228000 -- (-10111.277) (-10108.635) [-10100.535] (-10105.257) * (-10108.866) [-10100.301] (-10102.772) (-10106.592) -- 0:39:53
229000 -- (-10103.651) [-10116.775] (-10115.822) (-10110.171) * [-10114.103] (-10115.798) (-10117.415) (-10106.333) -- 0:39:50
230000 -- (-10100.800) [-10110.912] (-10117.677) (-10107.131) * (-10111.827) (-10124.288) (-10111.278) [-10113.693] -- 0:39:47
Average standard deviation of split frequencies: 0.004087
231000 -- (-10118.326) [-10106.560] (-10117.828) (-10108.065) * (-10115.611) (-10116.107) (-10103.148) [-10099.560] -- 0:39:43
232000 -- (-10106.081) (-10115.052) [-10100.094] (-10115.092) * (-10107.051) (-10112.142) [-10103.878] (-10108.106) -- 0:39:40
233000 -- (-10113.477) (-10106.979) (-10110.133) [-10111.692] * (-10113.193) (-10124.262) (-10113.793) [-10116.241] -- 0:39:36
234000 -- (-10116.430) (-10124.686) (-10111.135) [-10106.230] * (-10117.017) (-10113.899) [-10108.570] (-10104.680) -- 0:39:33
235000 -- (-10107.382) (-10110.768) [-10107.238] (-10115.239) * (-10123.401) (-10110.804) (-10105.501) [-10108.462] -- 0:39:33
Average standard deviation of split frequencies: 0.003995
236000 -- (-10114.493) [-10110.766] (-10110.702) (-10112.568) * (-10109.794) [-10111.988] (-10111.417) (-10107.923) -- 0:39:29
237000 -- (-10110.448) (-10100.999) [-10105.723] (-10119.770) * (-10109.457) (-10111.482) (-10112.022) [-10110.161] -- 0:39:26
238000 -- (-10113.526) [-10102.609] (-10126.966) (-10123.398) * [-10101.287] (-10123.691) (-10123.961) (-10115.324) -- 0:39:22
239000 -- [-10115.963] (-10122.230) (-10102.648) (-10114.362) * (-10112.267) (-10113.787) [-10098.668] (-10110.824) -- 0:39:19
240000 -- (-10112.907) (-10115.834) (-10112.526) [-10110.503] * [-10107.149] (-10114.049) (-10118.972) (-10107.866) -- 0:39:16
Average standard deviation of split frequencies: 0.004026
241000 -- (-10115.622) [-10108.967] (-10109.831) (-10112.605) * (-10112.935) (-10113.599) [-10107.488] (-10107.855) -- 0:39:12
242000 -- [-10110.095] (-10108.320) (-10109.628) (-10106.755) * [-10105.014] (-10113.013) (-10108.464) (-10104.799) -- 0:39:09
243000 -- (-10123.864) (-10112.665) [-10107.864] (-10122.048) * (-10126.531) [-10104.485] (-10106.843) (-10103.521) -- 0:39:05
244000 -- (-10104.188) [-10104.460] (-10119.079) (-10105.855) * (-10119.924) (-10112.453) (-10117.465) [-10106.637] -- 0:39:02
245000 -- (-10107.777) (-10113.488) [-10111.400] (-10106.149) * [-10109.356] (-10113.100) (-10112.227) (-10109.717) -- 0:39:02
Average standard deviation of split frequencies: 0.003939
246000 -- (-10107.611) (-10113.147) (-10108.336) [-10108.513] * [-10110.968] (-10112.753) (-10125.988) (-10110.656) -- 0:38:58
247000 -- (-10111.865) (-10103.979) (-10103.969) [-10103.521] * (-10117.852) [-10114.967] (-10108.267) (-10117.657) -- 0:38:55
248000 -- (-10107.218) (-10118.452) [-10110.776] (-10107.280) * (-10115.324) [-10107.009] (-10110.937) (-10105.655) -- 0:38:51
249000 -- (-10099.864) (-10111.222) (-10111.105) [-10097.995] * (-10113.139) [-10106.961] (-10120.020) (-10117.983) -- 0:38:48
250000 -- (-10106.462) [-10108.838] (-10110.492) (-10111.389) * (-10120.227) (-10103.554) [-10111.156] (-10121.878) -- 0:38:45
Average standard deviation of split frequencies: 0.003866
251000 -- (-10107.238) (-10115.214) (-10113.469) [-10103.757] * (-10108.967) (-10111.731) [-10112.284] (-10104.358) -- 0:38:44
252000 -- (-10104.321) (-10116.163) (-10111.649) [-10110.040] * (-10102.607) (-10103.975) (-10127.169) [-10114.847] -- 0:38:41
253000 -- [-10107.627] (-10106.687) (-10106.176) (-10112.943) * (-10100.674) (-10125.431) (-10103.077) [-10101.848] -- 0:38:37
254000 -- [-10108.005] (-10107.664) (-10111.709) (-10118.423) * (-10111.524) [-10111.733] (-10116.627) (-10113.867) -- 0:38:34
255000 -- [-10111.085] (-10110.889) (-10105.918) (-10122.037) * (-10111.130) (-10116.516) [-10102.883] (-10105.805) -- 0:38:30
Average standard deviation of split frequencies: 0.003990
256000 -- (-10100.058) (-10113.778) [-10107.836] (-10118.238) * (-10119.060) (-10120.847) (-10103.983) [-10105.601] -- 0:38:27
257000 -- (-10116.205) (-10108.459) (-10118.552) [-10106.988] * (-10112.715) (-10123.556) [-10116.982] (-10103.108) -- 0:38:24
258000 -- [-10116.544] (-10115.182) (-10119.521) (-10109.431) * (-10109.546) [-10108.638] (-10107.941) (-10107.864) -- 0:38:20
259000 -- [-10108.862] (-10110.403) (-10114.494) (-10112.559) * (-10107.526) (-10118.418) [-10105.306] (-10113.312) -- 0:38:17
260000 -- (-10101.985) (-10113.463) (-10116.909) [-10106.850] * (-10107.933) (-10112.282) (-10109.642) [-10107.993] -- 0:38:14
Average standard deviation of split frequencies: 0.004421
261000 -- (-10110.414) [-10106.712] (-10108.791) (-10115.463) * (-10112.722) (-10112.178) [-10108.436] (-10117.412) -- 0:38:10
262000 -- (-10101.406) (-10107.411) [-10101.557] (-10128.001) * (-10111.237) (-10108.242) [-10108.494] (-10125.917) -- 0:38:10
263000 -- (-10111.620) [-10107.984] (-10098.314) (-10115.251) * (-10109.996) (-10107.756) [-10110.958] (-10131.993) -- 0:38:06
264000 -- (-10110.274) [-10104.059] (-10113.602) (-10122.678) * [-10111.574] (-10102.090) (-10104.600) (-10113.667) -- 0:38:03
265000 -- (-10107.282) (-10101.617) (-10117.428) [-10111.540] * (-10112.129) [-10107.116] (-10110.892) (-10110.823) -- 0:37:59
Average standard deviation of split frequencies: 0.004037
266000 -- [-10106.038] (-10105.415) (-10109.966) (-10115.392) * (-10117.069) [-10101.224] (-10106.752) (-10100.420) -- 0:37:56
267000 -- [-10101.600] (-10117.687) (-10106.909) (-10106.395) * [-10107.119] (-10101.097) (-10114.051) (-10108.800) -- 0:37:53
268000 -- (-10116.259) (-10110.053) (-10116.895) [-10108.395] * (-10114.048) [-10102.117] (-10102.137) (-10111.980) -- 0:37:49
269000 -- (-10107.477) [-10110.335] (-10127.418) (-10113.297) * (-10108.159) (-10107.438) [-10104.778] (-10105.721) -- 0:37:46
270000 -- [-10111.032] (-10122.855) (-10122.300) (-10110.993) * (-10110.084) [-10103.299] (-10104.143) (-10116.071) -- 0:37:43
Average standard deviation of split frequencies: 0.004161
271000 -- [-10116.995] (-10098.659) (-10115.950) (-10126.207) * (-10113.639) (-10108.088) [-10104.507] (-10103.915) -- 0:37:39
272000 -- (-10111.290) (-10104.524) (-10110.724) [-10113.775] * (-10110.970) (-10125.373) (-10108.434) [-10107.524] -- 0:37:36
273000 -- (-10114.251) [-10117.551] (-10117.747) (-10109.755) * (-10120.360) [-10106.211] (-10116.004) (-10115.685) -- 0:37:32
274000 -- (-10107.448) [-10100.291] (-10106.842) (-10098.737) * (-10118.288) [-10106.294] (-10105.135) (-10105.109) -- 0:37:29
275000 -- [-10112.504] (-10106.226) (-10119.056) (-10107.169) * (-10107.677) (-10104.850) [-10107.114] (-10109.058) -- 0:37:28
Average standard deviation of split frequencies: 0.004460
276000 -- (-10103.537) (-10107.802) (-10105.710) [-10115.757] * [-10109.271] (-10128.237) (-10107.488) (-10104.869) -- 0:37:25
277000 -- (-10122.465) (-10105.620) (-10105.898) [-10107.140] * (-10107.935) [-10110.877] (-10103.635) (-10109.011) -- 0:37:22
278000 -- [-10111.514] (-10097.235) (-10117.998) (-10105.325) * (-10111.685) (-10119.461) [-10104.935] (-10107.546) -- 0:37:18
279000 -- (-10122.924) [-10102.177] (-10104.122) (-10106.746) * (-10118.495) [-10116.976] (-10110.059) (-10122.124) -- 0:37:15
280000 -- (-10123.340) (-10112.645) [-10106.197] (-10118.256) * (-10110.398) [-10109.365] (-10106.387) (-10113.953) -- 0:37:14
Average standard deviation of split frequencies: 0.004106
281000 -- (-10107.804) (-10116.151) [-10108.985] (-10127.456) * [-10102.888] (-10108.165) (-10106.717) (-10104.437) -- 0:37:11
282000 -- (-10109.337) (-10112.214) [-10110.344] (-10110.472) * (-10103.921) [-10113.789] (-10107.390) (-10109.089) -- 0:37:07
283000 -- (-10105.769) (-10105.676) [-10111.001] (-10120.412) * (-10112.920) (-10109.874) (-10108.531) [-10104.286] -- 0:37:04
284000 -- (-10110.171) (-10109.419) [-10112.321] (-10121.554) * [-10108.170] (-10120.796) (-10108.548) (-10115.820) -- 0:37:01
285000 -- [-10107.055] (-10112.961) (-10112.855) (-10115.857) * (-10115.612) (-10109.251) (-10113.955) [-10102.276] -- 0:36:57
Average standard deviation of split frequencies: 0.003205
286000 -- (-10108.823) (-10110.694) [-10109.646] (-10114.834) * (-10116.401) (-10122.130) [-10110.824] (-10101.895) -- 0:36:54
287000 -- (-10099.495) [-10105.561] (-10112.509) (-10124.040) * (-10114.221) (-10111.235) [-10114.454] (-10117.902) -- 0:36:53
288000 -- (-10121.025) (-10111.014) [-10106.980] (-10112.423) * (-10115.201) (-10112.987) [-10106.636] (-10113.451) -- 0:36:50
289000 -- (-10103.186) (-10130.265) [-10101.689] (-10119.907) * (-10119.698) (-10111.499) (-10106.428) [-10110.044] -- 0:36:46
290000 -- (-10107.444) (-10115.046) [-10100.083] (-10105.505) * (-10118.765) (-10111.925) (-10107.597) [-10115.724] -- 0:36:43
Average standard deviation of split frequencies: 0.003244
291000 -- (-10108.209) (-10114.272) (-10105.945) [-10104.635] * (-10113.894) (-10116.029) [-10099.594] (-10109.031) -- 0:36:40
292000 -- (-10105.397) (-10120.551) [-10100.383] (-10108.592) * [-10105.812] (-10114.075) (-10109.143) (-10102.595) -- 0:36:36
293000 -- [-10108.853] (-10118.071) (-10120.017) (-10098.866) * (-10116.433) [-10104.305] (-10123.093) (-10115.218) -- 0:36:33
294000 -- (-10108.112) [-10104.019] (-10103.654) (-10110.546) * [-10101.709] (-10104.330) (-10112.332) (-10109.102) -- 0:36:30
295000 -- (-10108.795) [-10108.534] (-10115.861) (-10105.717) * [-10108.404] (-10120.648) (-10120.891) (-10118.030) -- 0:36:26
Average standard deviation of split frequencies: 0.003362
296000 -- (-10110.370) [-10112.876] (-10112.923) (-10102.417) * (-10108.593) [-10102.086] (-10114.858) (-10125.968) -- 0:36:25
297000 -- (-10107.376) [-10112.437] (-10120.275) (-10111.616) * (-10106.849) [-10102.086] (-10111.166) (-10123.732) -- 0:36:22
298000 -- (-10120.482) [-10106.542] (-10122.757) (-10114.673) * (-10114.679) [-10109.494] (-10120.686) (-10118.949) -- 0:36:19
299000 -- [-10110.793] (-10117.959) (-10114.114) (-10108.597) * (-10107.373) [-10100.225] (-10113.683) (-10116.348) -- 0:36:15
300000 -- (-10106.491) (-10113.191) (-10110.984) [-10106.078] * (-10101.085) (-10111.693) [-10108.479] (-10116.453) -- 0:36:12
Average standard deviation of split frequencies: 0.003658
301000 -- (-10118.390) (-10104.753) [-10102.071] (-10122.231) * [-10099.478] (-10114.062) (-10103.880) (-10116.957) -- 0:36:11
302000 -- (-10108.562) (-10106.675) (-10106.796) [-10106.350] * (-10106.276) (-10116.729) [-10117.294] (-10122.880) -- 0:36:07
303000 -- (-10105.859) [-10106.451] (-10111.862) (-10107.194) * [-10102.899] (-10110.204) (-10103.736) (-10116.689) -- 0:36:04
304000 -- [-10107.338] (-10130.341) (-10124.661) (-10122.735) * (-10110.490) (-10114.815) [-10114.147] (-10114.460) -- 0:36:01
305000 -- [-10109.432] (-10110.186) (-10111.886) (-10108.096) * (-10102.363) [-10104.996] (-10116.496) (-10110.020) -- 0:35:57
Average standard deviation of split frequencies: 0.003680
306000 -- [-10111.631] (-10105.972) (-10111.463) (-10121.819) * [-10099.024] (-10115.962) (-10101.460) (-10106.907) -- 0:35:54
307000 -- (-10109.621) [-10114.986] (-10108.767) (-10103.795) * (-10110.970) (-10108.884) (-10105.771) [-10098.991] -- 0:35:51
308000 -- [-10107.089] (-10112.366) (-10106.598) (-10122.893) * (-10117.137) [-10106.675] (-10109.191) (-10117.043) -- 0:35:47
309000 -- (-10113.131) [-10107.340] (-10111.893) (-10115.953) * (-10102.765) (-10114.404) (-10100.839) [-10098.336] -- 0:35:46
310000 -- [-10112.548] (-10110.259) (-10116.380) (-10121.248) * (-10118.274) (-10103.271) [-10095.904] (-10102.204) -- 0:35:43
Average standard deviation of split frequencies: 0.003203
311000 -- (-10120.847) [-10114.185] (-10116.984) (-10114.171) * (-10120.895) (-10110.253) (-10119.261) [-10106.325] -- 0:35:40
312000 -- (-10112.517) [-10102.031] (-10128.075) (-10119.654) * (-10129.552) (-10111.452) (-10117.846) [-10104.792] -- 0:35:36
313000 -- [-10110.179] (-10115.718) (-10109.286) (-10118.156) * (-10108.714) (-10124.259) (-10105.229) [-10111.668] -- 0:35:33
314000 -- (-10125.765) [-10105.086] (-10106.228) (-10122.136) * (-10115.054) (-10117.958) [-10104.529] (-10119.268) -- 0:35:30
315000 -- (-10117.157) (-10107.864) [-10111.429] (-10109.892) * [-10106.488] (-10110.981) (-10105.611) (-10109.024) -- 0:35:28
Average standard deviation of split frequencies: 0.003149
316000 -- [-10107.959] (-10105.739) (-10110.554) (-10120.129) * (-10110.651) (-10115.916) (-10109.679) [-10106.491] -- 0:35:25
317000 -- (-10110.454) [-10108.047] (-10116.994) (-10113.450) * (-10104.154) [-10104.426] (-10113.856) (-10101.952) -- 0:35:22
318000 -- (-10104.093) [-10102.017] (-10103.312) (-10111.390) * [-10108.602] (-10108.210) (-10111.913) (-10106.775) -- 0:35:18
319000 -- (-10112.632) [-10100.980] (-10117.864) (-10114.796) * (-10119.033) [-10102.940] (-10118.773) (-10119.050) -- 0:35:15
320000 -- [-10108.368] (-10106.585) (-10122.312) (-10122.694) * (-10119.659) [-10110.843] (-10102.109) (-10103.692) -- 0:35:12
Average standard deviation of split frequencies: 0.002695
321000 -- (-10104.932) (-10115.186) (-10119.740) [-10106.751] * (-10109.878) [-10110.814] (-10105.077) (-10105.689) -- 0:35:08
322000 -- (-10107.232) (-10110.264) (-10128.815) [-10115.651] * (-10107.027) (-10104.246) (-10115.348) [-10110.169] -- 0:35:05
323000 -- [-10111.268] (-10101.587) (-10130.327) (-10106.068) * (-10113.157) [-10109.371] (-10111.884) (-10112.178) -- 0:35:02
324000 -- [-10106.169] (-10106.398) (-10119.458) (-10124.306) * (-10113.244) [-10101.974] (-10111.051) (-10113.513) -- 0:34:58
325000 -- (-10121.086) (-10106.676) (-10112.003) [-10110.079] * (-10120.366) [-10107.680] (-10118.216) (-10112.372) -- 0:34:55
Average standard deviation of split frequencies: 0.002490
326000 -- (-10118.373) (-10105.612) [-10107.817] (-10109.701) * (-10121.139) (-10103.540) (-10114.084) [-10100.071] -- 0:34:54
327000 -- (-10103.808) [-10111.030] (-10126.229) (-10125.484) * (-10107.499) [-10102.310] (-10118.893) (-10111.384) -- 0:34:51
328000 -- [-10106.547] (-10108.799) (-10116.745) (-10119.701) * (-10105.933) (-10113.125) [-10113.648] (-10115.133) -- 0:34:47
329000 -- (-10102.786) (-10117.033) [-10117.130] (-10106.140) * (-10105.667) [-10106.468] (-10117.105) (-10121.055) -- 0:34:44
330000 -- [-10111.938] (-10114.553) (-10103.879) (-10116.552) * [-10102.989] (-10112.593) (-10098.569) (-10113.074) -- 0:34:41
Average standard deviation of split frequencies: 0.002614
331000 -- (-10109.864) (-10104.685) (-10124.754) [-10103.571] * (-10109.267) (-10103.407) [-10116.095] (-10104.412) -- 0:34:37
332000 -- (-10108.972) [-10108.830] (-10123.439) (-10107.972) * [-10108.060] (-10109.772) (-10111.480) (-10119.877) -- 0:34:34
333000 -- (-10110.432) (-10119.378) (-10107.202) [-10103.782] * (-10107.977) [-10104.560] (-10103.278) (-10111.790) -- 0:34:31
334000 -- (-10100.171) [-10108.719] (-10115.332) (-10111.670) * [-10104.759] (-10106.582) (-10114.838) (-10110.737) -- 0:34:27
335000 -- (-10116.307) (-10105.972) (-10119.946) [-10100.210] * (-10113.092) (-10114.698) [-10121.059] (-10110.249) -- 0:34:24
Average standard deviation of split frequencies: 0.002650
336000 -- (-10111.524) (-10114.147) [-10110.674] (-10107.895) * (-10114.761) [-10106.440] (-10114.547) (-10103.678) -- 0:34:21
337000 -- [-10108.857] (-10118.227) (-10114.669) (-10113.913) * (-10132.391) [-10105.060] (-10105.761) (-10108.946) -- 0:34:19
338000 -- [-10106.029] (-10106.332) (-10113.034) (-10106.263) * (-10109.191) (-10112.218) [-10106.917] (-10101.830) -- 0:34:16
339000 -- (-10125.199) (-10114.134) (-10122.596) [-10109.133] * (-10113.388) [-10109.192] (-10116.573) (-10110.196) -- 0:34:13
340000 -- [-10110.720] (-10109.175) (-10113.162) (-10100.194) * (-10113.324) [-10100.831] (-10108.817) (-10112.639) -- 0:34:09
Average standard deviation of split frequencies: 0.002998
341000 -- (-10117.754) (-10102.827) (-10122.302) [-10112.424] * [-10108.251] (-10101.554) (-10110.272) (-10115.623) -- 0:34:06
342000 -- (-10117.645) (-10117.538) [-10113.714] (-10116.349) * (-10129.445) (-10108.150) (-10115.549) [-10112.708] -- 0:34:03
343000 -- (-10122.963) [-10103.824] (-10119.568) (-10110.470) * (-10117.347) (-10120.987) [-10103.631] (-10116.782) -- 0:33:59
344000 -- [-10118.800] (-10111.393) (-10112.702) (-10105.641) * (-10118.908) (-10107.551) (-10103.460) [-10106.501] -- 0:33:56
345000 -- (-10111.199) [-10106.841] (-10103.894) (-10120.315) * (-10124.244) (-10115.173) (-10110.316) [-10105.604] -- 0:33:53
Average standard deviation of split frequencies: 0.003557
346000 -- (-10112.637) (-10109.144) [-10106.934] (-10110.517) * (-10115.013) [-10112.512] (-10111.157) (-10119.046) -- 0:33:50
347000 -- (-10110.425) [-10100.629] (-10119.608) (-10118.003) * (-10116.416) [-10108.786] (-10119.033) (-10111.130) -- 0:33:48
348000 -- (-10114.424) [-10094.617] (-10127.155) (-10115.193) * (-10110.926) (-10117.644) (-10108.722) [-10097.192] -- 0:33:45
349000 -- (-10121.929) [-10105.217] (-10110.246) (-10116.798) * (-10123.310) (-10106.153) [-10103.675] (-10099.461) -- 0:33:42
350000 -- (-10110.721) (-10101.840) [-10112.439] (-10113.928) * (-10127.993) (-10104.286) [-10109.191] (-10117.460) -- 0:33:38
Average standard deviation of split frequencies: 0.003435
351000 -- [-10113.816] (-10103.662) (-10114.500) (-10118.831) * (-10116.063) (-10107.568) [-10106.023] (-10112.799) -- 0:33:35
352000 -- (-10105.776) (-10104.407) [-10107.216] (-10109.745) * (-10132.361) (-10106.599) (-10114.054) [-10117.900] -- 0:33:32
353000 -- (-10113.688) (-10108.051) (-10104.002) [-10112.158] * (-10126.461) (-10106.015) [-10113.964] (-10107.406) -- 0:33:28
354000 -- (-10102.951) (-10108.127) (-10119.157) [-10115.617] * (-10107.822) (-10114.227) (-10111.470) [-10102.372] -- 0:33:25
355000 -- (-10111.915) [-10105.322] (-10111.564) (-10107.623) * (-10119.801) [-10120.534] (-10107.491) (-10111.472) -- 0:33:22
Average standard deviation of split frequencies: 0.002795
356000 -- (-10111.290) (-10105.517) (-10120.120) [-10115.783] * (-10108.294) (-10108.542) (-10109.027) [-10107.705] -- 0:33:18
357000 -- [-10109.467] (-10121.912) (-10107.947) (-10114.782) * (-10123.257) (-10109.116) (-10109.361) [-10098.736] -- 0:33:15
358000 -- (-10111.512) [-10112.191] (-10109.383) (-10106.257) * (-10121.665) (-10110.904) (-10112.003) [-10107.664] -- 0:33:14
359000 -- (-10118.352) [-10100.394] (-10108.507) (-10110.652) * (-10117.218) (-10108.260) [-10105.126] (-10103.193) -- 0:33:10
360000 -- [-10106.405] (-10107.178) (-10130.456) (-10104.955) * (-10111.850) (-10108.069) (-10101.860) [-10113.643] -- 0:33:07
Average standard deviation of split frequencies: 0.003122
361000 -- [-10099.654] (-10099.658) (-10114.707) (-10107.986) * (-10110.301) [-10099.103] (-10109.266) (-10112.873) -- 0:33:04
362000 -- (-10109.086) (-10101.820) [-10113.129] (-10108.681) * (-10110.517) (-10119.915) (-10121.426) [-10104.915] -- 0:33:00
363000 -- (-10103.790) [-10100.762] (-10110.516) (-10110.818) * (-10109.065) (-10110.976) (-10114.797) [-10101.340] -- 0:32:57
364000 -- [-10109.172] (-10104.466) (-10120.806) (-10102.399) * (-10117.457) (-10116.371) [-10107.912] (-10106.059) -- 0:32:56
365000 -- (-10112.833) [-10110.243] (-10111.644) (-10118.597) * (-10122.143) [-10100.735] (-10112.498) (-10113.503) -- 0:32:52
Average standard deviation of split frequencies: 0.002791
366000 -- [-10107.822] (-10117.729) (-10105.534) (-10100.774) * (-10114.596) (-10105.442) [-10106.872] (-10113.913) -- 0:32:49
367000 -- (-10104.594) [-10102.245] (-10113.171) (-10114.607) * [-10115.131] (-10115.060) (-10112.251) (-10114.368) -- 0:32:46
368000 -- [-10105.442] (-10127.902) (-10120.383) (-10110.607) * (-10118.987) (-10104.448) (-10110.975) [-10115.556] -- 0:32:44
369000 -- (-10121.770) (-10134.855) (-10117.309) [-10098.775] * (-10114.059) [-10109.734] (-10112.618) (-10119.768) -- 0:32:41
370000 -- (-10114.634) (-10110.846) [-10115.853] (-10101.470) * (-10121.925) (-10120.902) [-10120.269] (-10117.064) -- 0:32:38
Average standard deviation of split frequencies: 0.002473
371000 -- (-10109.706) (-10111.765) (-10117.667) [-10112.875] * (-10127.607) (-10124.138) [-10105.589] (-10109.448) -- 0:32:36
372000 -- (-10105.346) (-10108.583) (-10120.430) [-10104.566] * [-10114.738] (-10111.902) (-10114.000) (-10119.677) -- 0:32:33
373000 -- (-10117.070) [-10110.981] (-10132.610) (-10107.628) * (-10114.451) (-10115.655) [-10107.249] (-10107.385) -- 0:32:31
374000 -- (-10122.840) (-10107.707) (-10115.831) [-10108.054] * [-10113.348] (-10110.903) (-10107.440) (-10112.359) -- 0:32:28
375000 -- (-10114.423) (-10115.734) [-10108.675] (-10110.338) * (-10110.971) (-10107.756) (-10110.372) [-10106.188] -- 0:32:25
Average standard deviation of split frequencies: 0.002716
376000 -- (-10112.547) (-10106.845) (-10107.354) [-10104.403] * (-10118.606) (-10103.426) [-10104.383] (-10110.497) -- 0:32:21
377000 -- (-10108.135) (-10121.958) [-10107.260] (-10109.399) * (-10111.298) (-10119.452) (-10110.087) [-10119.074] -- 0:32:18
378000 -- [-10113.568] (-10114.671) (-10109.243) (-10109.156) * (-10115.624) [-10107.035] (-10114.908) (-10105.426) -- 0:32:15
379000 -- (-10114.314) [-10107.455] (-10102.683) (-10105.890) * (-10128.173) (-10109.310) [-10102.550] (-10107.873) -- 0:32:11
380000 -- (-10108.854) (-10100.788) (-10118.567) [-10104.821] * (-10111.510) [-10107.746] (-10110.138) (-10126.606) -- 0:32:08
Average standard deviation of split frequencies: 0.003027
381000 -- (-10115.495) (-10110.390) [-10111.732] (-10105.380) * [-10104.356] (-10105.941) (-10116.147) (-10115.377) -- 0:32:05
382000 -- [-10126.173] (-10111.580) (-10115.235) (-10110.906) * (-10110.221) [-10105.821] (-10111.024) (-10116.089) -- 0:32:03
383000 -- (-10114.361) (-10110.619) (-10112.688) [-10114.385] * [-10105.576] (-10114.152) (-10114.043) (-10103.655) -- 0:32:00
384000 -- (-10104.670) (-10121.584) (-10116.695) [-10107.755] * (-10109.533) (-10123.639) (-10115.108) [-10102.618] -- 0:31:56
385000 -- (-10116.946) (-10098.853) [-10110.002] (-10107.569) * (-10112.158) [-10102.958] (-10121.305) (-10106.509) -- 0:31:53
Average standard deviation of split frequencies: 0.003189
386000 -- (-10102.442) [-10106.185] (-10114.266) (-10104.903) * (-10111.751) (-10111.954) [-10104.218] (-10115.436) -- 0:31:50
387000 -- [-10109.145] (-10106.569) (-10101.597) (-10102.344) * (-10117.172) [-10109.949] (-10112.142) (-10115.117) -- 0:31:47
388000 -- [-10105.349] (-10111.410) (-10096.665) (-10110.153) * (-10115.039) (-10109.227) (-10127.130) [-10104.415] -- 0:31:43
389000 -- [-10100.580] (-10101.007) (-10107.892) (-10112.066) * (-10113.075) (-10115.060) [-10108.600] (-10117.461) -- 0:31:40
390000 -- (-10109.324) [-10107.665] (-10119.267) (-10102.079) * (-10110.264) (-10110.394) (-10120.869) [-10105.092] -- 0:31:37
Average standard deviation of split frequencies: 0.003352
391000 -- [-10100.962] (-10108.014) (-10120.472) (-10112.102) * (-10115.945) [-10115.968] (-10105.946) (-10115.555) -- 0:31:33
392000 -- (-10118.531) (-10103.799) (-10110.679) [-10110.311] * (-10110.104) [-10107.453] (-10117.988) (-10119.162) -- 0:31:32
393000 -- (-10117.898) (-10111.823) (-10106.677) [-10123.797] * (-10110.641) (-10112.365) (-10108.533) [-10107.077] -- 0:31:28
394000 -- [-10107.715] (-10111.758) (-10119.099) (-10113.948) * (-10108.820) [-10105.919] (-10107.869) (-10103.951) -- 0:31:25
395000 -- [-10110.093] (-10118.817) (-10108.384) (-10115.954) * [-10109.398] (-10104.281) (-10114.393) (-10120.866) -- 0:31:22
Average standard deviation of split frequencies: 0.003174
396000 -- (-10113.975) [-10104.694] (-10102.799) (-10117.080) * [-10107.318] (-10100.691) (-10106.427) (-10110.101) -- 0:31:19
397000 -- (-10114.094) (-10119.751) (-10113.530) [-10108.674] * (-10113.238) [-10100.728] (-10102.814) (-10111.281) -- 0:31:15
398000 -- (-10111.261) (-10115.965) (-10108.852) [-10097.493] * [-10107.878] (-10123.466) (-10110.965) (-10124.264) -- 0:31:12
399000 -- (-10104.457) [-10100.810] (-10129.654) (-10106.664) * (-10112.694) [-10113.814] (-10109.468) (-10114.152) -- 0:31:09
400000 -- (-10115.761) [-10108.360] (-10111.618) (-10103.575) * (-10115.081) (-10102.311) (-10107.542) [-10109.253] -- 0:31:07
Average standard deviation of split frequencies: 0.003334
401000 -- (-10102.703) (-10116.297) [-10106.197] (-10112.590) * (-10120.083) (-10114.146) (-10106.860) [-10101.809] -- 0:31:04
402000 -- (-10122.448) (-10097.985) [-10105.774] (-10127.890) * (-10108.046) (-10111.831) (-10109.045) [-10095.956] -- 0:31:00
403000 -- (-10106.051) (-10109.500) [-10105.580] (-10115.351) * (-10111.689) [-10111.190] (-10105.250) (-10112.600) -- 0:30:57
404000 -- [-10108.415] (-10107.634) (-10114.308) (-10110.990) * (-10114.611) (-10110.322) (-10128.011) [-10110.669] -- 0:30:54
405000 -- (-10100.496) (-10112.785) [-10105.872] (-10111.200) * [-10107.914] (-10103.910) (-10116.570) (-10111.957) -- 0:30:51
Average standard deviation of split frequencies: 0.003096
406000 -- (-10107.615) [-10103.105] (-10110.221) (-10109.338) * (-10116.936) (-10106.805) (-10110.050) [-10107.184] -- 0:30:47
407000 -- [-10104.110] (-10117.148) (-10126.302) (-10101.989) * (-10114.188) [-10120.612] (-10120.691) (-10106.830) -- 0:30:44
408000 -- (-10103.009) (-10100.535) [-10106.867] (-10106.551) * (-10107.843) [-10108.721] (-10105.054) (-10104.999) -- 0:30:41
409000 -- (-10102.025) [-10108.349] (-10117.525) (-10114.023) * (-10109.130) (-10119.692) (-10114.259) [-10108.746] -- 0:30:38
410000 -- [-10113.624] (-10100.838) (-10116.815) (-10103.892) * (-10124.856) (-10114.735) [-10103.271] (-10119.390) -- 0:30:34
Average standard deviation of split frequencies: 0.002997
411000 -- (-10107.500) (-10105.762) [-10115.330] (-10109.821) * [-10109.489] (-10111.067) (-10111.164) (-10107.868) -- 0:30:31
412000 -- (-10105.909) (-10116.540) [-10100.624] (-10114.481) * (-10099.673) [-10110.560] (-10107.535) (-10104.708) -- 0:30:29
413000 -- (-10117.967) (-10106.796) [-10109.892] (-10115.792) * [-10103.089] (-10103.960) (-10109.510) (-10108.832) -- 0:30:26
414000 -- (-10120.342) [-10108.953] (-10109.962) (-10105.420) * (-10118.614) (-10110.251) (-10114.203) [-10104.924] -- 0:30:23
415000 -- [-10106.748] (-10118.412) (-10103.991) (-10126.951) * [-10107.584] (-10114.209) (-10123.003) (-10097.459) -- 0:30:19
Average standard deviation of split frequencies: 0.002644
416000 -- [-10107.827] (-10114.383) (-10097.814) (-10109.622) * [-10124.559] (-10117.332) (-10111.877) (-10105.236) -- 0:30:16
417000 -- (-10110.309) [-10104.404] (-10102.169) (-10103.897) * (-10107.782) (-10105.592) (-10119.840) [-10116.958] -- 0:30:13
418000 -- [-10107.360] (-10107.796) (-10120.117) (-10104.797) * (-10113.519) [-10107.471] (-10104.951) (-10112.478) -- 0:30:10
419000 -- (-10110.769) (-10114.784) [-10115.311] (-10104.970) * (-10107.543) [-10107.484] (-10113.924) (-10114.448) -- 0:30:06
420000 -- (-10109.955) (-10120.523) [-10101.454] (-10114.867) * (-10116.068) (-10102.808) (-10109.560) [-10105.533] -- 0:30:03
Average standard deviation of split frequencies: 0.002926
421000 -- (-10108.180) (-10116.487) (-10105.675) [-10110.255] * [-10097.249] (-10096.381) (-10104.196) (-10108.617) -- 0:30:00
422000 -- (-10105.028) (-10121.379) [-10102.053] (-10107.946) * (-10115.116) (-10097.578) [-10108.420] (-10113.495) -- 0:29:58
423000 -- [-10106.012] (-10097.146) (-10115.154) (-10113.692) * (-10116.092) [-10104.751] (-10115.126) (-10115.364) -- 0:29:55
424000 -- (-10109.037) [-10113.441] (-10108.694) (-10123.793) * (-10116.713) (-10113.755) (-10112.474) [-10107.951] -- 0:29:51
425000 -- (-10111.826) (-10118.812) [-10100.862] (-10124.001) * (-10111.593) (-10116.807) (-10114.677) [-10105.438] -- 0:29:48
Average standard deviation of split frequencies: 0.002951
426000 -- (-10106.609) (-10107.412) [-10109.774] (-10114.699) * (-10127.250) [-10108.003] (-10111.017) (-10097.874) -- 0:29:45
427000 -- (-10112.250) [-10104.260] (-10111.345) (-10116.512) * (-10117.088) (-10114.258) [-10123.850] (-10106.592) -- 0:29:42
428000 -- (-10124.187) [-10109.386] (-10114.945) (-10109.112) * (-10114.227) (-10101.167) (-10107.841) [-10106.847] -- 0:29:38
429000 -- (-10110.185) [-10103.854] (-10128.869) (-10106.763) * (-10115.744) (-10109.824) [-10103.805] (-10108.547) -- 0:29:35
430000 -- (-10106.061) (-10114.628) [-10103.723] (-10109.270) * (-10111.739) (-10105.360) (-10117.727) [-10106.459] -- 0:29:32
Average standard deviation of split frequencies: 0.002858
431000 -- (-10111.180) (-10102.849) (-10127.031) [-10105.782] * (-10108.986) [-10108.230] (-10111.770) (-10117.306) -- 0:29:29
432000 -- [-10101.721] (-10122.530) (-10112.169) (-10127.818) * (-10113.246) [-10112.478] (-10113.413) (-10123.054) -- 0:29:25
433000 -- (-10118.023) (-10109.703) (-10103.327) [-10115.014] * (-10113.048) (-10115.338) [-10104.172] (-10117.361) -- 0:29:22
434000 -- (-10106.740) (-10108.565) [-10108.219] (-10107.212) * (-10120.525) [-10102.712] (-10107.041) (-10111.517) -- 0:29:20
435000 -- (-10130.826) (-10110.803) [-10109.566] (-10119.725) * (-10107.190) [-10104.506] (-10122.491) (-10107.904) -- 0:29:17
Average standard deviation of split frequencies: 0.002763
436000 -- (-10104.389) (-10104.089) (-10106.332) [-10104.043] * (-10111.727) (-10105.518) (-10114.178) [-10104.618] -- 0:29:14
437000 -- (-10117.579) (-10114.107) (-10115.522) [-10103.591] * (-10109.387) (-10104.485) [-10105.629] (-10100.466) -- 0:29:10
438000 -- (-10113.883) (-10111.271) (-10104.732) [-10104.237] * (-10115.748) [-10102.152] (-10115.075) (-10102.832) -- 0:29:07
439000 -- [-10102.709] (-10103.308) (-10116.846) (-10113.264) * (-10106.813) (-10108.540) (-10117.897) [-10104.400] -- 0:29:04
440000 -- [-10102.859] (-10104.898) (-10108.906) (-10112.444) * (-10112.604) (-10111.013) [-10105.758] (-10109.214) -- 0:29:01
Average standard deviation of split frequencies: 0.002615
441000 -- [-10105.502] (-10109.450) (-10110.932) (-10118.734) * (-10105.644) (-10113.805) (-10114.211) [-10104.841] -- 0:28:57
442000 -- (-10106.436) [-10108.733] (-10122.735) (-10110.737) * (-10100.811) (-10114.169) (-10114.848) [-10111.792] -- 0:28:54
443000 -- (-10113.278) (-10123.692) (-10109.058) [-10116.906] * (-10112.047) (-10104.532) [-10106.982] (-10116.243) -- 0:28:51
444000 -- (-10104.292) [-10112.571] (-10107.154) (-10120.429) * (-10104.009) (-10122.457) [-10120.306] (-10102.761) -- 0:28:49
445000 -- (-10115.450) (-10108.280) (-10106.369) [-10096.011] * (-10108.149) [-10101.953] (-10127.211) (-10102.135) -- 0:28:46
Average standard deviation of split frequencies: 0.002466
446000 -- (-10108.715) (-10115.799) (-10109.800) [-10111.701] * [-10103.023] (-10109.648) (-10115.939) (-10120.911) -- 0:28:42
447000 -- (-10124.164) (-10107.412) (-10120.901) [-10098.177] * (-10108.028) (-10109.377) [-10100.493] (-10110.423) -- 0:28:39
448000 -- (-10114.784) (-10113.061) (-10119.392) [-10093.575] * (-10112.929) [-10114.481] (-10110.519) (-10110.104) -- 0:28:36
449000 -- (-10104.996) (-10109.239) (-10119.969) [-10110.541] * (-10116.851) (-10126.068) [-10112.288] (-10104.171) -- 0:28:33
450000 -- (-10112.685) [-10099.941] (-10109.520) (-10112.228) * (-10114.861) (-10111.960) [-10108.598] (-10116.242) -- 0:28:29
Average standard deviation of split frequencies: 0.003080
451000 -- (-10107.628) (-10113.195) (-10103.328) [-10108.975] * [-10108.363] (-10127.889) (-10111.067) (-10112.609) -- 0:28:26
452000 -- [-10113.688] (-10118.655) (-10115.470) (-10111.102) * [-10112.807] (-10106.560) (-10128.873) (-10119.400) -- 0:28:23
453000 -- (-10102.815) (-10119.230) (-10109.144) [-10096.319] * (-10113.047) (-10113.853) [-10103.704] (-10114.516) -- 0:28:21
454000 -- (-10117.448) (-10110.527) [-10113.977] (-10117.301) * (-10125.603) (-10100.173) (-10127.668) [-10098.334] -- 0:28:18
455000 -- (-10112.664) (-10109.650) (-10114.486) [-10104.857] * (-10118.404) (-10104.448) [-10101.096] (-10106.140) -- 0:28:14
Average standard deviation of split frequencies: 0.003044
456000 -- (-10101.283) (-10108.778) (-10105.730) [-10113.617] * (-10103.740) (-10103.696) (-10111.713) [-10103.152] -- 0:28:11
457000 -- [-10107.049] (-10124.002) (-10111.186) (-10106.138) * (-10121.262) (-10107.206) (-10114.490) [-10096.830] -- 0:28:08
458000 -- (-10117.277) (-10110.687) [-10112.252] (-10110.814) * (-10128.997) (-10107.919) (-10123.696) [-10101.503] -- 0:28:05
459000 -- [-10102.977] (-10106.251) (-10115.231) (-10110.075) * (-10116.315) [-10100.324] (-10110.322) (-10107.460) -- 0:28:01
460000 -- [-10102.816] (-10109.133) (-10114.965) (-10117.467) * (-10111.575) (-10106.988) [-10108.869] (-10111.534) -- 0:27:58
Average standard deviation of split frequencies: 0.002729
461000 -- (-10115.083) (-10114.989) [-10119.253] (-10108.536) * (-10118.908) (-10098.347) (-10120.503) [-10107.904] -- 0:27:55
462000 -- (-10115.608) (-10114.120) [-10098.071] (-10108.301) * (-10123.423) [-10117.720] (-10115.472) (-10101.930) -- 0:27:52
463000 -- (-10104.789) (-10103.681) (-10103.839) [-10104.633] * (-10116.213) [-10108.750] (-10108.162) (-10106.199) -- 0:27:50
464000 -- (-10100.145) (-10118.690) [-10106.157] (-10108.463) * [-10109.187] (-10115.582) (-10111.364) (-10115.197) -- 0:27:46
465000 -- [-10104.161] (-10111.947) (-10108.567) (-10109.119) * [-10110.012] (-10110.247) (-10115.615) (-10106.209) -- 0:27:43
Average standard deviation of split frequencies: 0.002585
466000 -- (-10112.488) (-10113.028) (-10116.668) [-10110.422] * (-10118.590) (-10108.101) [-10105.009] (-10107.296) -- 0:27:40
467000 -- [-10109.127] (-10102.060) (-10114.123) (-10108.639) * (-10104.576) [-10111.372] (-10114.115) (-10111.582) -- 0:27:37
468000 -- [-10105.952] (-10104.097) (-10108.741) (-10115.553) * (-10104.591) (-10099.365) (-10115.276) [-10101.700] -- 0:27:33
469000 -- (-10110.940) [-10102.646] (-10105.312) (-10117.958) * [-10101.396] (-10114.865) (-10100.097) (-10109.980) -- 0:27:30
470000 -- [-10106.425] (-10107.026) (-10111.282) (-10116.213) * (-10110.615) (-10122.233) [-10105.368] (-10110.856) -- 0:27:27
Average standard deviation of split frequencies: 0.002838
471000 -- (-10112.163) [-10100.749] (-10118.782) (-10101.142) * [-10110.541] (-10128.131) (-10099.769) (-10114.044) -- 0:27:24
472000 -- (-10110.493) (-10111.117) [-10113.684] (-10102.153) * [-10103.584] (-10108.356) (-10106.483) (-10102.137) -- 0:27:22
473000 -- (-10114.878) (-10119.653) (-10124.490) [-10096.024] * (-10109.147) (-10108.537) [-10113.897] (-10111.180) -- 0:27:18
474000 -- (-10117.169) (-10121.188) [-10100.449] (-10118.267) * (-10117.442) [-10115.159] (-10118.925) (-10107.288) -- 0:27:15
475000 -- [-10112.351] (-10109.686) (-10102.156) (-10110.612) * [-10111.574] (-10107.614) (-10114.801) (-10112.122) -- 0:27:12
Average standard deviation of split frequencies: 0.002806
476000 -- [-10106.993] (-10105.008) (-10106.099) (-10110.234) * [-10102.974] (-10102.891) (-10115.836) (-10096.816) -- 0:27:09
477000 -- [-10102.548] (-10112.075) (-10107.321) (-10110.887) * [-10108.271] (-10111.420) (-10112.177) (-10114.804) -- 0:27:06
478000 -- [-10103.923] (-10107.834) (-10117.463) (-10115.113) * (-10116.501) (-10102.576) (-10118.483) [-10100.959] -- 0:27:02
479000 -- [-10105.459] (-10117.290) (-10114.939) (-10110.435) * (-10111.526) [-10102.776] (-10119.984) (-10107.529) -- 0:26:59
480000 -- [-10103.257] (-10117.718) (-10105.685) (-10105.666) * [-10106.966] (-10114.895) (-10109.515) (-10113.118) -- 0:26:56
Average standard deviation of split frequencies: 0.002670
481000 -- (-10128.130) (-10112.752) [-10112.719] (-10111.960) * (-10106.326) (-10110.551) (-10120.191) [-10107.616] -- 0:26:54
482000 -- [-10118.270] (-10111.748) (-10112.182) (-10107.940) * (-10121.560) [-10101.228] (-10103.822) (-10113.460) -- 0:26:50
483000 -- (-10117.882) [-10113.829] (-10108.389) (-10108.527) * (-10106.229) (-10112.436) (-10114.977) [-10109.749] -- 0:26:47
484000 -- [-10104.523] (-10120.847) (-10108.567) (-10121.915) * (-10108.106) (-10121.294) [-10108.699] (-10111.743) -- 0:26:44
485000 -- (-10124.089) (-10111.448) [-10110.987] (-10106.557) * [-10100.333] (-10109.134) (-10112.866) (-10115.212) -- 0:26:41
Average standard deviation of split frequencies: 0.002587
486000 -- (-10106.719) (-10114.859) (-10099.271) [-10101.857] * [-10102.231] (-10122.860) (-10111.132) (-10112.083) -- 0:26:38
487000 -- (-10107.842) (-10099.297) [-10111.132] (-10110.855) * (-10108.903) (-10109.411) (-10110.957) [-10098.447] -- 0:26:34
488000 -- (-10105.761) (-10106.213) [-10104.168] (-10117.064) * (-10108.848) (-10113.899) [-10119.377] (-10102.567) -- 0:26:31
489000 -- (-10114.731) [-10103.122] (-10115.784) (-10105.572) * [-10103.501] (-10108.711) (-10123.381) (-10113.649) -- 0:26:28
490000 -- (-10114.622) [-10104.568] (-10113.647) (-10117.513) * [-10107.334] (-10121.302) (-10120.844) (-10105.212) -- 0:26:25
Average standard deviation of split frequencies: 0.002882
491000 -- (-10116.759) [-10108.447] (-10111.780) (-10103.222) * (-10112.457) (-10119.972) [-10114.537] (-10108.381) -- 0:26:21
492000 -- [-10115.479] (-10112.175) (-10115.916) (-10118.233) * (-10126.214) (-10121.272) (-10111.041) [-10103.169] -- 0:26:18
493000 -- (-10106.662) (-10121.841) [-10109.107] (-10101.670) * [-10119.469] (-10118.613) (-10108.431) (-10114.968) -- 0:26:15
494000 -- (-10110.926) (-10124.039) [-10106.507] (-10126.713) * [-10103.645] (-10109.136) (-10111.308) (-10117.775) -- 0:26:13
495000 -- [-10113.591] (-10117.866) (-10117.765) (-10107.471) * (-10108.299) (-10103.740) [-10104.282] (-10104.741) -- 0:26:10
Average standard deviation of split frequencies: 0.003010
496000 -- (-10107.772) (-10134.168) [-10113.637] (-10109.540) * (-10104.331) (-10120.081) [-10099.104] (-10105.166) -- 0:26:06
497000 -- (-10111.793) (-10124.694) [-10107.161] (-10116.312) * (-10110.795) [-10123.717] (-10102.163) (-10115.772) -- 0:26:03
498000 -- [-10101.639] (-10101.841) (-10113.699) (-10109.319) * (-10110.454) (-10116.628) [-10099.822] (-10123.813) -- 0:26:00
499000 -- [-10104.803] (-10109.398) (-10113.105) (-10111.987) * (-10112.517) [-10102.341] (-10108.050) (-10115.613) -- 0:25:57
500000 -- (-10117.227) (-10110.962) [-10110.537] (-10121.899) * (-10125.076) [-10103.839] (-10113.320) (-10110.378) -- 0:25:54
Average standard deviation of split frequencies: 0.002197
501000 -- (-10105.628) (-10108.669) [-10115.305] (-10112.540) * [-10104.997] (-10099.018) (-10121.811) (-10107.778) -- 0:25:51
502000 -- (-10117.238) (-10105.156) (-10114.011) [-10101.636] * (-10097.523) [-10106.015] (-10117.583) (-10103.506) -- 0:25:48
503000 -- (-10108.840) (-10104.174) [-10104.663] (-10106.392) * (-10102.546) (-10112.905) (-10115.959) [-10102.916] -- 0:25:45
504000 -- (-10110.492) (-10109.589) [-10097.575] (-10103.394) * (-10113.979) (-10121.379) [-10107.439] (-10118.387) -- 0:25:42
505000 -- [-10104.571] (-10118.756) (-10111.296) (-10114.169) * (-10110.851) [-10106.008] (-10113.660) (-10108.895) -- 0:25:38
Average standard deviation of split frequencies: 0.002226
506000 -- [-10123.125] (-10105.942) (-10118.956) (-10111.485) * (-10119.381) (-10117.827) [-10103.451] (-10119.207) -- 0:25:35
507000 -- [-10105.896] (-10110.486) (-10103.687) (-10105.362) * (-10103.744) (-10111.880) [-10105.149] (-10112.673) -- 0:25:32
508000 -- (-10105.858) (-10107.991) [-10110.424] (-10101.271) * (-10115.457) [-10116.482] (-10117.918) (-10109.915) -- 0:25:29
509000 -- (-10119.413) (-10102.364) (-10104.053) [-10105.368] * (-10119.631) (-10113.623) [-10109.979] (-10110.029) -- 0:25:27
510000 -- (-10127.072) [-10108.602] (-10112.475) (-10107.171) * [-10112.478] (-10113.150) (-10109.463) (-10114.369) -- 0:25:23
Average standard deviation of split frequencies: 0.002359
511000 -- [-10113.712] (-10109.066) (-10109.882) (-10114.641) * (-10120.946) (-10112.768) [-10104.436] (-10113.418) -- 0:25:20
512000 -- [-10111.322] (-10115.829) (-10118.677) (-10103.134) * (-10110.126) (-10111.514) (-10111.092) [-10110.851] -- 0:25:17
513000 -- (-10114.722) [-10112.424] (-10119.748) (-10108.248) * [-10104.483] (-10113.302) (-10120.916) (-10108.288) -- 0:25:14
514000 -- (-10104.547) (-10109.322) (-10111.507) [-10107.059] * (-10111.902) (-10110.346) [-10109.386] (-10109.376) -- 0:25:10
515000 -- [-10112.745] (-10114.466) (-10102.373) (-10125.648) * [-10105.424] (-10109.316) (-10112.282) (-10124.443) -- 0:25:07
Average standard deviation of split frequencies: 0.002538
516000 -- (-10109.565) (-10110.156) [-10117.284] (-10119.333) * [-10111.609] (-10121.428) (-10117.046) (-10127.763) -- 0:25:04
517000 -- (-10118.968) (-10107.351) [-10104.547] (-10104.450) * (-10123.550) (-10102.066) (-10118.379) [-10107.524] -- 0:25:01
518000 -- [-10103.250] (-10119.292) (-10111.318) (-10103.511) * (-10115.669) (-10107.238) [-10106.930] (-10105.017) -- 0:24:58
519000 -- (-10104.123) [-10111.994] (-10118.789) (-10106.481) * (-10117.183) (-10120.487) [-10107.827] (-10101.504) -- 0:24:54
520000 -- (-10111.344) (-10116.832) (-10121.896) [-10111.261] * (-10107.081) (-10118.476) [-10112.261] (-10116.947) -- 0:24:51
Average standard deviation of split frequencies: 0.002163
521000 -- (-10110.940) (-10108.626) [-10111.450] (-10102.470) * (-10108.586) (-10113.278) (-10107.694) [-10108.595] -- 0:24:48
522000 -- (-10121.051) (-10114.312) [-10108.129] (-10108.722) * [-10108.970] (-10107.112) (-10104.711) (-10116.866) -- 0:24:45
523000 -- (-10114.445) (-10110.099) (-10106.226) [-10103.487] * [-10104.712] (-10110.574) (-10107.196) (-10105.526) -- 0:24:42
524000 -- (-10123.021) (-10104.246) [-10108.981] (-10115.617) * (-10101.386) [-10097.795] (-10111.747) (-10112.637) -- 0:24:39
525000 -- (-10109.990) (-10103.312) (-10111.141) [-10107.075] * (-10103.160) (-10116.203) [-10113.505] (-10115.574) -- 0:24:36
Average standard deviation of split frequencies: 0.002091
526000 -- (-10111.127) (-10108.820) (-10104.030) [-10114.574] * (-10110.378) (-10106.627) [-10101.494] (-10113.864) -- 0:24:33
527000 -- (-10118.889) (-10125.711) [-10107.623] (-10115.901) * (-10098.154) (-10127.229) [-10103.292] (-10122.592) -- 0:24:30
528000 -- (-10123.937) (-10126.174) (-10107.122) [-10114.290] * (-10116.223) (-10126.351) [-10104.858] (-10119.732) -- 0:24:26
529000 -- [-10121.134] (-10123.410) (-10107.598) (-10116.921) * (-10106.500) (-10111.568) (-10118.083) [-10105.129] -- 0:24:23
530000 -- [-10107.702] (-10119.171) (-10113.897) (-10110.619) * (-10109.639) (-10116.233) [-10106.242] (-10105.486) -- 0:24:20
Average standard deviation of split frequencies: 0.002122
531000 -- [-10110.251] (-10102.306) (-10103.535) (-10107.019) * (-10119.264) (-10125.594) [-10097.961] (-10124.192) -- 0:24:17
532000 -- [-10112.116] (-10105.319) (-10113.580) (-10112.569) * (-10109.356) (-10119.722) [-10101.009] (-10120.255) -- 0:24:14
533000 -- [-10098.641] (-10111.104) (-10125.755) (-10116.140) * [-10098.340] (-10107.331) (-10098.236) (-10124.568) -- 0:24:10
534000 -- (-10111.114) (-10116.729) [-10107.973] (-10116.613) * (-10110.063) (-10117.331) (-10103.510) [-10111.614] -- 0:24:07
535000 -- (-10106.989) [-10103.966] (-10120.746) (-10105.361) * (-10105.590) [-10102.606] (-10118.936) (-10117.011) -- 0:24:05
Average standard deviation of split frequencies: 0.002101
536000 -- (-10118.526) [-10108.930] (-10114.074) (-10106.611) * [-10119.201] (-10112.848) (-10114.285) (-10125.436) -- 0:24:02
537000 -- [-10106.251] (-10108.559) (-10120.474) (-10113.218) * (-10110.033) [-10105.535] (-10104.323) (-10099.519) -- 0:23:59
538000 -- [-10108.247] (-10118.309) (-10108.247) (-10114.742) * (-10109.592) [-10118.410] (-10105.778) (-10106.448) -- 0:23:55
539000 -- (-10118.317) (-10107.280) [-10108.574] (-10109.208) * (-10118.694) [-10119.599] (-10109.504) (-10112.720) -- 0:23:52
540000 -- (-10100.808) [-10110.725] (-10108.418) (-10123.705) * (-10107.887) (-10125.132) (-10114.879) [-10108.125] -- 0:23:49
Average standard deviation of split frequencies: 0.001986
541000 -- [-10118.936] (-10124.220) (-10106.585) (-10109.746) * (-10104.645) (-10110.897) (-10115.182) [-10105.442] -- 0:23:46
542000 -- [-10116.683] (-10111.578) (-10108.668) (-10106.014) * (-10107.344) (-10110.445) (-10127.050) [-10105.048] -- 0:23:43
543000 -- (-10111.789) [-10104.740] (-10111.960) (-10114.578) * [-10121.007] (-10106.886) (-10112.051) (-10125.159) -- 0:23:39
544000 -- (-10118.978) (-10107.060) [-10099.985] (-10105.698) * (-10108.603) [-10108.479] (-10113.613) (-10102.413) -- 0:23:36
545000 -- (-10097.833) [-10108.316] (-10106.801) (-10119.905) * (-10114.189) [-10100.413] (-10109.003) (-10112.874) -- 0:23:33
Average standard deviation of split frequencies: 0.001919
546000 -- [-10114.744] (-10118.644) (-10120.014) (-10120.652) * [-10103.575] (-10106.752) (-10110.720) (-10113.084) -- 0:23:30
547000 -- (-10108.486) (-10114.833) (-10105.858) [-10106.046] * (-10102.702) (-10106.616) [-10109.156] (-10122.049) -- 0:23:27
548000 -- [-10113.350] (-10105.586) (-10123.822) (-10116.202) * [-10107.834] (-10105.607) (-10114.230) (-10113.362) -- 0:23:24
549000 -- (-10100.938) [-10105.337] (-10113.605) (-10107.205) * (-10115.175) (-10110.956) (-10110.764) [-10101.193] -- 0:23:21
550000 -- [-10109.060] (-10105.460) (-10108.468) (-10124.902) * [-10113.248] (-10111.858) (-10105.827) (-10109.216) -- 0:23:18
Average standard deviation of split frequencies: 0.001855
551000 -- (-10112.077) (-10112.815) (-10116.278) [-10101.032] * [-10106.709] (-10114.543) (-10119.632) (-10111.774) -- 0:23:15
552000 -- (-10108.766) (-10110.129) (-10108.634) [-10103.997] * (-10124.208) [-10113.646] (-10105.231) (-10109.308) -- 0:23:11
553000 -- [-10111.780] (-10099.493) (-10105.289) (-10107.138) * (-10113.703) [-10101.019] (-10126.410) (-10110.101) -- 0:23:08
554000 -- [-10094.705] (-10108.373) (-10105.481) (-10113.964) * (-10113.425) (-10102.235) [-10109.187] (-10124.795) -- 0:23:05
555000 -- [-10099.487] (-10121.286) (-10106.354) (-10121.586) * (-10108.270) [-10110.399] (-10108.200) (-10110.719) -- 0:23:02
Average standard deviation of split frequencies: 0.001837
556000 -- (-10105.907) (-10114.882) [-10100.033] (-10110.595) * [-10110.513] (-10113.599) (-10113.254) (-10110.758) -- 0:22:59
557000 -- (-10109.813) [-10111.233] (-10134.184) (-10111.931) * (-10108.996) (-10120.973) (-10104.985) [-10109.437] -- 0:22:55
558000 -- [-10108.675] (-10102.507) (-10112.101) (-10114.096) * (-10100.422) [-10104.141] (-10115.089) (-10106.632) -- 0:22:53
559000 -- (-10119.535) (-10106.451) (-10112.838) [-10111.408] * [-10108.439] (-10112.628) (-10133.364) (-10117.138) -- 0:22:50
560000 -- (-10114.141) (-10110.661) (-10102.253) [-10107.049] * [-10105.077] (-10111.529) (-10118.104) (-10112.622) -- 0:22:47
Average standard deviation of split frequencies: 0.001728
561000 -- (-10109.587) [-10100.739] (-10111.967) (-10112.033) * (-10113.742) [-10113.764] (-10118.322) (-10107.049) -- 0:22:43
562000 -- (-10127.902) (-10103.734) [-10100.088] (-10111.779) * (-10116.832) [-10104.957] (-10111.361) (-10122.631) -- 0:22:40
563000 -- (-10123.960) (-10111.508) [-10105.466] (-10114.418) * [-10109.489] (-10105.439) (-10105.435) (-10115.579) -- 0:22:37
564000 -- [-10103.794] (-10114.734) (-10106.776) (-10109.792) * (-10102.953) (-10117.836) [-10105.658] (-10106.592) -- 0:22:34
565000 -- (-10104.649) (-10107.838) [-10107.345] (-10108.783) * [-10107.573] (-10108.683) (-10105.269) (-10113.875) -- 0:22:31
Average standard deviation of split frequencies: 0.001990
566000 -- (-10110.343) (-10116.048) [-10101.945] (-10125.380) * (-10106.763) (-10115.348) (-10115.351) [-10109.897] -- 0:22:28
567000 -- [-10108.497] (-10108.660) (-10140.002) (-10112.014) * (-10107.581) (-10107.375) (-10099.605) [-10107.932] -- 0:22:24
568000 -- [-10111.171] (-10115.078) (-10119.032) (-10107.398) * (-10105.127) (-10110.215) (-10121.962) [-10099.826] -- 0:22:21
569000 -- (-10107.960) (-10112.182) [-10110.589] (-10106.281) * (-10108.778) (-10112.348) (-10104.341) [-10102.646] -- 0:22:18
570000 -- (-10104.803) [-10116.889] (-10116.823) (-10116.694) * [-10099.569] (-10118.989) (-10112.510) (-10113.585) -- 0:22:15
Average standard deviation of split frequencies: 0.002111
571000 -- (-10109.776) (-10107.731) [-10110.929] (-10111.984) * (-10115.857) [-10107.465] (-10105.675) (-10118.146) -- 0:22:12
572000 -- (-10107.557) (-10113.175) [-10104.434] (-10118.021) * (-10109.233) (-10114.813) [-10106.639] (-10108.731) -- 0:22:09
573000 -- (-10106.930) (-10109.199) [-10108.250] (-10103.457) * (-10104.530) [-10103.230] (-10108.208) (-10122.781) -- 0:22:06
574000 -- [-10104.313] (-10115.984) (-10105.042) (-10114.007) * (-10099.819) [-10107.692] (-10115.631) (-10108.709) -- 0:22:03
575000 -- (-10112.941) (-10115.916) (-10129.557) [-10118.601] * (-10114.919) [-10104.771] (-10109.924) (-10110.279) -- 0:22:00
Average standard deviation of split frequencies: 0.002637
576000 -- (-10115.042) (-10111.345) (-10111.329) [-10109.456] * (-10112.324) (-10108.953) [-10110.217] (-10112.388) -- 0:21:56
577000 -- [-10117.540] (-10116.895) (-10108.292) (-10118.462) * [-10120.178] (-10105.570) (-10101.873) (-10116.786) -- 0:21:53
578000 -- (-10107.066) [-10106.964] (-10104.064) (-10123.381) * (-10106.758) (-10104.421) [-10101.297] (-10119.453) -- 0:21:50
579000 -- (-10116.460) (-10110.029) (-10099.483) [-10113.806] * (-10107.975) (-10116.984) [-10105.274] (-10102.828) -- 0:21:47
580000 -- (-10111.283) [-10104.209] (-10101.816) (-10108.087) * (-10109.873) (-10116.057) (-10114.727) [-10103.099] -- 0:21:44
Average standard deviation of split frequencies: 0.002616
581000 -- (-10122.217) (-10101.445) [-10106.049] (-10107.767) * (-10115.994) [-10102.040] (-10106.365) (-10106.631) -- 0:21:40
582000 -- (-10114.160) [-10106.262] (-10117.034) (-10116.886) * (-10117.283) (-10109.965) (-10112.614) [-10107.307] -- 0:21:38
583000 -- (-10118.349) (-10118.731) (-10105.867) [-10109.346] * (-10114.721) [-10105.902] (-10132.385) (-10130.985) -- 0:21:35
584000 -- [-10109.765] (-10107.425) (-10110.802) (-10100.981) * (-10117.312) [-10107.640] (-10111.097) (-10100.711) -- 0:21:32
585000 -- [-10108.702] (-10111.914) (-10110.550) (-10110.584) * (-10109.709) [-10106.998] (-10108.486) (-10099.728) -- 0:21:28
Average standard deviation of split frequencies: 0.002503
586000 -- [-10108.722] (-10109.351) (-10119.844) (-10123.468) * (-10106.768) (-10103.138) (-10123.056) [-10109.720] -- 0:21:25
587000 -- [-10106.652] (-10110.370) (-10110.428) (-10108.399) * (-10108.455) (-10104.701) (-10116.941) [-10110.297] -- 0:21:22
588000 -- (-10117.656) (-10114.166) (-10113.250) [-10106.009] * (-10105.862) [-10102.241] (-10117.913) (-10108.057) -- 0:21:19
589000 -- [-10111.372] (-10104.421) (-10097.830) (-10109.630) * (-10111.248) (-10105.696) (-10121.341) [-10103.951] -- 0:21:16
590000 -- (-10105.912) (-10106.310) (-10119.108) [-10104.386] * (-10107.872) (-10110.522) (-10102.737) [-10106.555] -- 0:21:13
Average standard deviation of split frequencies: 0.002439
591000 -- (-10116.001) [-10115.814] (-10105.004) (-10114.844) * (-10119.817) [-10097.608] (-10103.085) (-10118.132) -- 0:21:09
592000 -- (-10122.046) (-10113.960) (-10116.292) [-10113.016] * (-10131.264) [-10103.896] (-10104.702) (-10115.769) -- 0:21:07
593000 -- (-10110.481) (-10115.600) [-10104.379] (-10119.477) * [-10101.327] (-10111.956) (-10110.953) (-10108.676) -- 0:21:04
594000 -- (-10110.058) (-10110.800) [-10110.456] (-10118.029) * [-10106.947] (-10113.870) (-10100.679) (-10108.227) -- 0:21:01
595000 -- [-10108.990] (-10107.909) (-10108.370) (-10114.574) * (-10109.202) [-10102.454] (-10111.269) (-10109.591) -- 0:20:57
Average standard deviation of split frequencies: 0.003164
596000 -- (-10110.851) [-10099.657] (-10110.735) (-10113.832) * (-10112.772) (-10107.965) (-10108.172) [-10106.209] -- 0:20:54
597000 -- [-10105.891] (-10114.316) (-10105.286) (-10107.597) * (-10106.717) [-10099.472] (-10105.272) (-10107.167) -- 0:20:51
598000 -- (-10111.586) [-10100.199] (-10104.190) (-10115.168) * [-10105.104] (-10109.591) (-10107.696) (-10122.783) -- 0:20:48
599000 -- (-10104.831) [-10107.338] (-10126.665) (-10117.827) * (-10114.752) (-10120.199) [-10111.795] (-10104.671) -- 0:20:45
600000 -- [-10101.297] (-10115.554) (-10117.156) (-10106.649) * (-10127.219) (-10102.255) (-10109.363) [-10101.681] -- 0:20:42
Average standard deviation of split frequencies: 0.003357
601000 -- (-10117.294) (-10113.057) (-10112.645) [-10101.884] * (-10114.831) (-10100.098) (-10117.746) [-10105.473] -- 0:20:38
602000 -- (-10107.635) [-10106.179] (-10117.464) (-10112.793) * (-10114.745) (-10103.741) (-10106.689) [-10100.113] -- 0:20:35
603000 -- (-10111.170) (-10109.881) (-10125.109) [-10108.077] * (-10106.141) (-10109.843) (-10123.529) [-10101.961] -- 0:20:32
604000 -- [-10106.297] (-10128.177) (-10120.647) (-10107.470) * (-10098.260) (-10129.610) (-10110.433) [-10101.556] -- 0:20:29
605000 -- (-10106.078) (-10106.226) [-10106.324] (-10111.816) * (-10110.946) (-10104.083) [-10115.787] (-10110.503) -- 0:20:26
Average standard deviation of split frequencies: 0.003284
606000 -- (-10110.129) [-10101.446] (-10111.224) (-10113.197) * [-10112.193] (-10112.211) (-10106.228) (-10118.384) -- 0:20:23
607000 -- (-10119.147) [-10103.834] (-10108.614) (-10110.340) * (-10109.781) [-10108.567] (-10115.542) (-10119.648) -- 0:20:20
608000 -- (-10124.417) (-10106.968) [-10105.359] (-10122.441) * [-10100.701] (-10110.676) (-10119.835) (-10103.349) -- 0:20:17
609000 -- (-10113.524) [-10106.634] (-10102.414) (-10122.178) * [-10100.880] (-10102.887) (-10117.228) (-10109.683) -- 0:20:14
610000 -- (-10112.111) (-10103.423) (-10114.976) [-10107.507] * (-10118.659) (-10109.364) [-10113.457] (-10106.837) -- 0:20:10
Average standard deviation of split frequencies: 0.003302
611000 -- (-10105.236) (-10119.757) (-10109.039) [-10100.820] * [-10115.076] (-10109.655) (-10097.923) (-10116.251) -- 0:20:07
612000 -- [-10107.159] (-10098.431) (-10113.557) (-10117.911) * (-10106.291) [-10110.195] (-10110.109) (-10109.360) -- 0:20:04
613000 -- [-10100.752] (-10110.741) (-10119.583) (-10108.545) * (-10103.039) [-10105.216] (-10105.382) (-10106.736) -- 0:20:01
614000 -- (-10107.710) (-10107.151) [-10101.913] (-10103.977) * [-10102.845] (-10105.866) (-10114.762) (-10104.958) -- 0:19:58
615000 -- (-10103.830) (-10116.388) [-10105.933] (-10119.599) * (-10122.138) [-10108.079] (-10110.406) (-10105.211) -- 0:19:55
Average standard deviation of split frequencies: 0.003401
616000 -- (-10107.684) (-10107.206) [-10100.397] (-10119.891) * (-10104.724) (-10113.502) (-10113.948) [-10102.382] -- 0:19:52
617000 -- (-10109.425) (-10103.668) (-10105.689) [-10118.636] * (-10106.957) [-10124.381] (-10108.101) (-10102.313) -- 0:19:49
618000 -- (-10101.576) (-10118.590) [-10105.997] (-10100.471) * [-10104.080] (-10113.016) (-10108.780) (-10106.443) -- 0:19:46
619000 -- (-10099.584) (-10122.072) (-10109.554) [-10106.041] * (-10101.373) (-10109.448) (-10122.321) [-10104.857] -- 0:19:43
620000 -- (-10111.490) (-10111.604) [-10109.494] (-10108.950) * (-10119.873) [-10112.335] (-10117.464) (-10109.964) -- 0:19:39
Average standard deviation of split frequencies: 0.003418
621000 -- [-10103.830] (-10102.874) (-10111.931) (-10110.859) * (-10112.422) (-10120.426) (-10117.851) [-10101.086] -- 0:19:36
622000 -- (-10110.789) [-10111.968] (-10110.744) (-10111.456) * (-10104.357) [-10100.204] (-10107.123) (-10108.781) -- 0:19:33
623000 -- (-10112.274) [-10109.279] (-10114.359) (-10112.707) * [-10103.002] (-10104.537) (-10118.860) (-10110.217) -- 0:19:30
624000 -- (-10109.807) (-10118.720) [-10111.493] (-10105.367) * (-10106.171) (-10102.638) (-10111.406) [-10111.590] -- 0:19:27
625000 -- (-10107.895) (-10122.701) [-10099.454] (-10113.835) * [-10108.777] (-10104.825) (-10105.755) (-10100.799) -- 0:19:24
Average standard deviation of split frequencies: 0.002928
626000 -- (-10106.228) (-10105.099) [-10103.487] (-10108.457) * (-10107.747) (-10115.558) [-10107.530] (-10111.676) -- 0:19:20
627000 -- [-10102.284] (-10106.251) (-10106.920) (-10116.752) * (-10110.792) (-10120.285) [-10105.344] (-10112.666) -- 0:19:18
628000 -- (-10102.506) (-10105.850) [-10096.261] (-10110.375) * (-10105.612) (-10101.773) (-10110.476) [-10119.284] -- 0:19:15
629000 -- (-10111.319) (-10112.547) [-10107.954] (-10114.973) * (-10108.686) (-10104.660) [-10099.410] (-10107.370) -- 0:19:11
630000 -- (-10119.601) (-10109.067) [-10111.586] (-10124.493) * (-10115.464) [-10108.988] (-10107.921) (-10112.993) -- 0:19:08
Average standard deviation of split frequencies: 0.002741
631000 -- (-10119.045) (-10124.477) (-10105.333) [-10110.726] * (-10103.277) (-10115.907) (-10108.181) [-10104.868] -- 0:19:05
632000 -- (-10109.582) [-10109.235] (-10114.644) (-10112.790) * (-10118.436) (-10110.891) [-10112.539] (-10117.542) -- 0:19:02
633000 -- (-10121.826) (-10105.652) [-10107.568] (-10112.352) * (-10118.948) [-10110.767] (-10105.527) (-10117.420) -- 0:18:59
634000 -- (-10105.446) [-10108.812] (-10117.452) (-10109.073) * (-10110.917) (-10112.210) (-10109.279) [-10108.627] -- 0:18:56
635000 -- (-10112.784) (-10111.030) (-10125.874) [-10113.242] * (-10097.197) (-10103.947) [-10110.289] (-10114.217) -- 0:18:52
Average standard deviation of split frequencies: 0.002718
636000 -- [-10112.289] (-10114.648) (-10111.670) (-10120.148) * (-10121.874) [-10108.523] (-10110.766) (-10106.372) -- 0:18:50
637000 -- [-10115.919] (-10112.276) (-10112.131) (-10117.390) * [-10117.745] (-10119.744) (-10109.481) (-10114.868) -- 0:18:47
638000 -- (-10116.143) [-10111.268] (-10110.651) (-10123.610) * (-10127.900) (-10118.108) (-10110.120) [-10112.510] -- 0:18:44
639000 -- (-10106.569) (-10112.325) [-10110.222] (-10107.893) * [-10102.452] (-10103.851) (-10106.662) (-10110.339) -- 0:18:40
640000 -- [-10101.455] (-10117.567) (-10104.159) (-10108.030) * (-10119.538) (-10098.596) (-10101.552) [-10104.532] -- 0:18:37
Average standard deviation of split frequencies: 0.002453
641000 -- [-10098.351] (-10112.250) (-10110.930) (-10117.971) * (-10116.399) (-10112.125) [-10106.745] (-10125.049) -- 0:18:34
642000 -- (-10113.866) [-10098.432] (-10124.449) (-10114.900) * (-10109.031) (-10115.545) (-10113.387) [-10118.618] -- 0:18:31
643000 -- (-10102.953) [-10103.284] (-10126.488) (-10124.909) * (-10108.483) (-10103.771) [-10096.392] (-10113.880) -- 0:18:28
644000 -- (-10104.362) [-10110.362] (-10111.213) (-10113.575) * [-10111.374] (-10111.981) (-10107.559) (-10111.040) -- 0:18:25
645000 -- (-10109.871) [-10112.743] (-10114.117) (-10110.119) * (-10107.561) (-10107.251) (-10110.815) [-10108.969] -- 0:18:21
Average standard deviation of split frequencies: 0.002230
646000 -- (-10106.182) (-10104.911) (-10114.610) [-10116.212] * (-10115.455) [-10097.845] (-10118.140) (-10112.214) -- 0:18:18
647000 -- [-10112.692] (-10114.246) (-10117.358) (-10125.460) * (-10103.964) (-10113.478) [-10105.711] (-10115.030) -- 0:18:15
648000 -- (-10110.323) (-10116.430) (-10111.903) [-10111.096] * (-10116.537) [-10113.064] (-10113.727) (-10104.045) -- 0:18:12
649000 -- (-10116.554) (-10113.179) [-10103.016] (-10106.729) * (-10117.805) (-10103.599) [-10109.320] (-10106.426) -- 0:18:09
650000 -- (-10110.431) (-10110.555) [-10103.489] (-10104.504) * (-10114.068) [-10106.353] (-10111.530) (-10096.193) -- 0:18:06
Average standard deviation of split frequencies: 0.002133
651000 -- (-10107.394) (-10120.413) [-10106.225] (-10111.184) * (-10116.339) (-10116.935) (-10132.271) [-10102.765] -- 0:18:03
652000 -- (-10118.513) [-10101.906] (-10116.039) (-10117.084) * (-10097.132) [-10111.406] (-10109.028) (-10108.761) -- 0:18:00
653000 -- (-10123.045) (-10108.801) [-10105.857] (-10103.020) * (-10105.711) (-10121.109) (-10117.068) [-10107.620] -- 0:17:57
654000 -- (-10116.133) (-10111.071) [-10102.787] (-10122.997) * [-10101.996] (-10110.837) (-10107.945) (-10112.528) -- 0:17:53
655000 -- (-10108.814) (-10110.931) (-10116.036) [-10107.514] * (-10099.873) (-10113.625) [-10104.652] (-10115.253) -- 0:17:50
Average standard deviation of split frequencies: 0.002156
656000 -- (-10111.010) [-10115.830] (-10116.662) (-10111.457) * [-10101.069] (-10122.554) (-10108.059) (-10110.398) -- 0:17:47
657000 -- (-10121.542) [-10112.178] (-10112.633) (-10105.913) * [-10107.063] (-10117.893) (-10108.723) (-10108.310) -- 0:17:45
658000 -- (-10104.453) (-10113.174) [-10114.148] (-10100.851) * (-10118.195) (-10109.178) (-10116.893) [-10102.547] -- 0:17:41
659000 -- [-10101.228] (-10130.674) (-10114.216) (-10109.738) * (-10114.139) (-10118.984) (-10127.527) [-10104.655] -- 0:17:38
660000 -- (-10108.956) (-10129.692) [-10103.914] (-10109.299) * (-10112.709) (-10111.673) [-10104.940] (-10112.091) -- 0:17:35
Average standard deviation of split frequencies: 0.002022
661000 -- [-10097.587] (-10121.386) (-10125.762) (-10107.970) * (-10120.475) (-10110.988) (-10102.422) [-10109.820] -- 0:17:32
662000 -- (-10111.734) [-10112.390] (-10105.271) (-10104.579) * (-10103.580) (-10119.390) [-10106.127] (-10120.039) -- 0:17:29
663000 -- (-10110.946) [-10109.684] (-10113.461) (-10114.324) * (-10100.257) (-10113.635) [-10100.721] (-10121.734) -- 0:17:26
664000 -- (-10109.443) (-10111.679) [-10106.349] (-10111.597) * (-10112.260) (-10100.553) (-10109.381) [-10104.915] -- 0:17:22
665000 -- (-10110.785) [-10105.990] (-10122.050) (-10106.861) * (-10110.848) [-10109.560] (-10120.543) (-10118.269) -- 0:17:19
Average standard deviation of split frequencies: 0.002320
666000 -- (-10114.162) (-10108.709) (-10118.207) [-10103.959] * [-10111.315] (-10126.099) (-10101.176) (-10120.405) -- 0:17:17
667000 -- [-10110.453] (-10111.104) (-10103.120) (-10105.949) * (-10115.558) [-10102.606] (-10117.667) (-10108.985) -- 0:17:13
668000 -- (-10111.786) (-10110.462) [-10111.760] (-10116.270) * (-10115.011) [-10110.462] (-10115.599) (-10111.254) -- 0:17:10
669000 -- (-10109.560) (-10102.832) (-10117.723) [-10109.469] * (-10124.758) [-10100.637] (-10103.607) (-10121.913) -- 0:17:07
670000 -- [-10111.506] (-10109.383) (-10104.188) (-10119.773) * [-10109.857] (-10100.881) (-10101.993) (-10108.677) -- 0:17:04
Average standard deviation of split frequencies: 0.002265
671000 -- (-10110.293) [-10103.318] (-10109.453) (-10104.117) * (-10109.085) [-10116.013] (-10117.908) (-10109.744) -- 0:17:01
672000 -- (-10109.518) [-10110.353] (-10115.638) (-10113.478) * (-10108.743) [-10108.075] (-10125.592) (-10107.603) -- 0:16:58
673000 -- [-10117.887] (-10117.981) (-10107.292) (-10118.136) * (-10118.016) (-10110.826) [-10120.270] (-10105.095) -- 0:16:55
674000 -- [-10111.493] (-10116.989) (-10111.451) (-10103.757) * (-10109.536) (-10108.079) (-10116.268) [-10105.384] -- 0:16:52
675000 -- [-10106.435] (-10111.260) (-10109.848) (-10113.438) * (-10112.122) (-10110.987) [-10108.906] (-10112.424) -- 0:16:49
Average standard deviation of split frequencies: 0.002479
676000 -- (-10117.871) (-10123.107) [-10098.684] (-10113.385) * (-10105.465) [-10107.702] (-10110.131) (-10109.552) -- 0:16:46
677000 -- (-10109.140) (-10111.766) [-10118.336] (-10103.338) * (-10104.366) [-10110.091] (-10109.144) (-10105.533) -- 0:16:42
678000 -- (-10117.108) [-10106.407] (-10118.913) (-10118.744) * (-10104.321) (-10110.220) (-10099.521) [-10102.317] -- 0:16:39
679000 -- [-10107.966] (-10113.134) (-10118.265) (-10113.635) * (-10109.973) (-10123.851) (-10112.056) [-10102.119] -- 0:16:36
680000 -- (-10104.029) [-10104.105] (-10118.031) (-10104.799) * [-10105.584] (-10118.848) (-10115.103) (-10100.954) -- 0:16:33
Average standard deviation of split frequencies: 0.002270
681000 -- (-10102.651) (-10118.502) (-10111.977) [-10104.308] * (-10105.987) (-10103.595) (-10111.444) [-10111.172] -- 0:16:30
682000 -- [-10110.162] (-10109.079) (-10113.646) (-10107.866) * (-10120.623) (-10117.013) [-10102.780] (-10110.120) -- 0:16:27
683000 -- (-10110.313) [-10111.415] (-10117.617) (-10106.829) * [-10099.293] (-10112.352) (-10107.206) (-10113.828) -- 0:16:24
684000 -- (-10109.561) [-10107.173] (-10110.860) (-10104.929) * [-10104.696] (-10118.036) (-10112.490) (-10107.807) -- 0:16:21
685000 -- [-10108.257] (-10109.960) (-10109.292) (-10123.530) * (-10103.312) (-10117.439) [-10106.412] (-10115.504) -- 0:16:18
Average standard deviation of split frequencies: 0.002596
686000 -- (-10115.639) (-10115.410) [-10104.831] (-10109.211) * [-10104.843] (-10121.266) (-10104.409) (-10108.758) -- 0:16:14
687000 -- (-10107.582) (-10102.780) [-10110.221] (-10114.640) * [-10095.261] (-10121.924) (-10106.195) (-10112.652) -- 0:16:11
688000 -- (-10108.228) (-10114.394) (-10103.060) [-10112.778] * (-10114.926) (-10111.163) (-10127.331) [-10113.109] -- 0:16:08
689000 -- [-10109.842] (-10127.090) (-10099.297) (-10103.556) * (-10108.705) (-10102.862) [-10112.142] (-10108.465) -- 0:16:05
690000 -- (-10111.275) (-10124.189) (-10107.964) [-10101.476] * (-10116.186) (-10122.452) [-10112.892] (-10110.570) -- 0:16:02
Average standard deviation of split frequencies: 0.002086
691000 -- (-10105.678) (-10110.472) (-10117.153) [-10099.313] * (-10124.650) (-10111.748) [-10100.638] (-10113.130) -- 0:15:59
692000 -- (-10107.020) (-10116.224) (-10111.490) [-10114.396] * (-10098.073) (-10109.500) [-10109.877] (-10116.656) -- 0:15:56
693000 -- (-10100.546) (-10131.840) [-10102.200] (-10101.874) * (-10099.718) (-10112.928) [-10102.293] (-10108.651) -- 0:15:53
694000 -- (-10109.821) (-10122.614) [-10098.353] (-10116.473) * [-10102.526] (-10113.883) (-10105.937) (-10112.209) -- 0:15:50
695000 -- (-10102.414) (-10102.213) [-10103.374] (-10105.830) * (-10108.270) (-10097.255) (-10108.488) [-10109.847] -- 0:15:47
Average standard deviation of split frequencies: 0.001994
696000 -- (-10115.940) [-10103.328] (-10111.158) (-10101.683) * (-10105.114) (-10102.805) [-10109.236] (-10099.836) -- 0:15:43
697000 -- (-10117.355) (-10109.053) [-10105.560] (-10126.877) * [-10110.369] (-10129.106) (-10091.817) (-10109.797) -- 0:15:41
698000 -- (-10112.585) (-10109.739) [-10107.209] (-10108.972) * (-10120.958) (-10128.610) (-10102.269) [-10102.716] -- 0:15:38
699000 -- [-10108.915] (-10106.104) (-10119.214) (-10106.801) * (-10118.197) (-10110.431) [-10111.938] (-10117.982) -- 0:15:34
700000 -- (-10107.738) (-10114.342) (-10112.817) [-10106.721] * [-10111.029] (-10107.807) (-10115.568) (-10117.941) -- 0:15:31
Average standard deviation of split frequencies: 0.001570
701000 -- (-10108.905) (-10121.496) (-10111.843) [-10106.029] * [-10106.648] (-10108.510) (-10109.267) (-10119.419) -- 0:15:28
702000 -- (-10113.761) (-10114.427) (-10109.554) [-10107.156] * (-10109.275) [-10101.593] (-10112.944) (-10111.961) -- 0:15:25
703000 -- [-10102.546] (-10122.824) (-10106.887) (-10111.188) * (-10112.887) [-10110.302] (-10118.777) (-10118.632) -- 0:15:22
704000 -- (-10103.152) (-10111.224) (-10113.863) [-10100.800] * (-10106.791) [-10102.629] (-10120.979) (-10107.751) -- 0:15:19
705000 -- (-10111.431) (-10114.121) [-10117.659] (-10106.647) * (-10126.141) [-10100.561] (-10129.837) (-10106.997) -- 0:15:15
Average standard deviation of split frequencies: 0.001781
706000 -- (-10112.250) [-10109.959] (-10107.914) (-10108.091) * (-10113.375) (-10107.910) [-10105.423] (-10119.517) -- 0:15:13
707000 -- [-10101.850] (-10124.865) (-10109.468) (-10122.730) * (-10112.587) (-10113.668) [-10113.862] (-10112.502) -- 0:15:10
708000 -- [-10108.134] (-10122.202) (-10105.564) (-10105.530) * [-10105.922] (-10112.513) (-10116.191) (-10120.721) -- 0:15:06
709000 -- (-10104.852) (-10111.766) (-10112.357) [-10101.665] * (-10114.276) (-10116.363) (-10113.696) [-10105.084] -- 0:15:03
710000 -- (-10107.200) (-10111.351) (-10120.876) [-10100.274] * (-10109.745) (-10108.753) (-10113.779) [-10113.250] -- 0:15:00
Average standard deviation of split frequencies: 0.001585
711000 -- (-10109.300) (-10113.565) (-10121.648) [-10109.993] * (-10117.914) (-10115.796) (-10116.937) [-10102.605] -- 0:14:57
712000 -- [-10113.409] (-10118.969) (-10108.234) (-10115.557) * (-10113.470) [-10100.306] (-10115.632) (-10108.724) -- 0:14:54
713000 -- (-10113.461) (-10108.288) (-10121.067) [-10102.211] * [-10107.138] (-10109.650) (-10106.573) (-10109.969) -- 0:14:51
714000 -- [-10112.639] (-10114.590) (-10113.188) (-10103.508) * [-10105.006] (-10108.060) (-10104.140) (-10129.965) -- 0:14:48
715000 -- (-10113.419) (-10116.266) [-10106.265] (-10120.667) * (-10115.246) [-10109.129] (-10108.023) (-10117.428) -- 0:14:45
Average standard deviation of split frequencies: 0.001500
716000 -- (-10109.362) [-10104.193] (-10122.738) (-10110.092) * (-10111.600) (-10119.079) (-10106.273) [-10101.725] -- 0:14:42
717000 -- (-10110.928) [-10116.190] (-10112.395) (-10106.914) * [-10106.366] (-10119.275) (-10108.285) (-10110.811) -- 0:14:38
718000 -- (-10104.167) (-10113.474) (-10113.127) [-10112.602] * [-10108.073] (-10110.865) (-10103.177) (-10121.301) -- 0:14:35
719000 -- (-10114.188) [-10113.633] (-10111.214) (-10123.173) * (-10116.197) (-10114.832) (-10115.751) [-10116.772] -- 0:14:32
720000 -- (-10116.107) [-10101.413] (-10112.591) (-10109.465) * [-10106.889] (-10121.104) (-10109.030) (-10116.435) -- 0:14:29
Average standard deviation of split frequencies: 0.001635
721000 -- (-10107.847) (-10111.910) [-10109.078] (-10110.105) * (-10106.959) (-10109.882) (-10108.448) [-10105.559] -- 0:14:26
722000 -- (-10111.027) (-10112.176) [-10108.396] (-10106.603) * (-10115.589) [-10108.721] (-10109.403) (-10119.724) -- 0:14:23
723000 -- (-10114.609) [-10107.053] (-10107.296) (-10122.940) * (-10114.549) [-10108.096] (-10112.495) (-10104.135) -- 0:14:20
724000 -- (-10114.882) (-10115.506) [-10111.449] (-10114.410) * (-10107.380) [-10097.254] (-10119.669) (-10097.753) -- 0:14:17
725000 -- (-10118.782) [-10107.559] (-10119.524) (-10103.249) * [-10101.672] (-10111.114) (-10119.275) (-10099.097) -- 0:14:14
Average standard deviation of split frequencies: 0.001984
726000 -- (-10119.534) [-10115.853] (-10104.037) (-10116.795) * [-10105.369] (-10113.559) (-10105.237) (-10118.001) -- 0:14:11
727000 -- (-10108.090) [-10103.114] (-10100.561) (-10117.973) * (-10110.209) (-10106.236) [-10112.034] (-10118.977) -- 0:14:07
728000 -- (-10110.151) (-10108.529) [-10104.658] (-10118.431) * (-10109.221) [-10100.023] (-10106.828) (-10107.296) -- 0:14:04
729000 -- (-10108.220) (-10117.000) [-10103.928] (-10110.151) * (-10111.552) (-10114.234) (-10108.868) [-10104.254] -- 0:14:01
730000 -- (-10114.922) (-10113.196) (-10114.482) [-10103.683] * [-10110.547] (-10122.084) (-10124.482) (-10111.184) -- 0:13:58
Average standard deviation of split frequencies: 0.001971
731000 -- (-10105.187) [-10109.632] (-10114.092) (-10107.916) * (-10114.240) [-10113.862] (-10118.172) (-10116.522) -- 0:13:55
732000 -- (-10115.093) [-10102.680] (-10108.011) (-10121.107) * (-10111.593) (-10110.026) [-10105.690] (-10106.418) -- 0:13:52
733000 -- (-10110.899) (-10116.345) (-10108.863) [-10102.142] * (-10106.634) (-10112.151) (-10110.199) [-10106.028] -- 0:13:49
734000 -- (-10105.598) [-10107.180] (-10108.132) (-10119.309) * [-10097.049] (-10126.808) (-10130.034) (-10113.201) -- 0:13:46
735000 -- [-10108.195] (-10114.808) (-10104.090) (-10107.043) * [-10114.767] (-10111.428) (-10115.773) (-10111.165) -- 0:13:43
Average standard deviation of split frequencies: 0.001886
736000 -- (-10107.800) (-10106.760) [-10109.161] (-10124.625) * (-10126.977) [-10102.515] (-10111.393) (-10117.564) -- 0:13:39
737000 -- (-10106.183) (-10128.074) [-10099.986] (-10115.460) * (-10122.188) (-10118.027) (-10113.663) [-10106.576] -- 0:13:36
738000 -- [-10100.683] (-10135.864) (-10108.757) (-10105.275) * (-10110.886) (-10110.291) (-10106.958) [-10103.019] -- 0:13:33
739000 -- [-10111.172] (-10113.596) (-10109.645) (-10104.257) * [-10111.863] (-10113.939) (-10108.528) (-10105.546) -- 0:13:30
740000 -- (-10125.023) (-10108.605) [-10113.938] (-10105.374) * (-10114.982) (-10111.651) [-10117.085] (-10114.095) -- 0:13:27
Average standard deviation of split frequencies: 0.001945
741000 -- [-10101.728] (-10122.261) (-10120.324) (-10121.409) * (-10103.456) [-10111.505] (-10105.120) (-10104.849) -- 0:13:24
742000 -- [-10094.557] (-10129.161) (-10123.300) (-10101.287) * (-10101.451) (-10105.219) [-10098.396] (-10132.072) -- 0:13:21
743000 -- (-10106.147) (-10110.901) (-10127.339) [-10105.914] * [-10097.820] (-10102.846) (-10106.273) (-10118.480) -- 0:13:18
744000 -- [-10105.493] (-10112.155) (-10118.906) (-10109.255) * (-10102.871) [-10106.915] (-10112.206) (-10122.226) -- 0:13:15
745000 -- (-10116.380) (-10116.646) [-10100.671] (-10115.422) * [-10111.007] (-10112.713) (-10110.528) (-10114.189) -- 0:13:12
Average standard deviation of split frequencies: 0.001896
746000 -- (-10112.559) (-10108.694) [-10098.593] (-10108.335) * (-10110.524) (-10105.335) (-10105.596) [-10100.215] -- 0:13:08
747000 -- (-10116.057) (-10110.245) (-10116.588) [-10116.139] * [-10114.426] (-10108.397) (-10110.992) (-10109.162) -- 0:13:06
748000 -- (-10113.420) (-10110.407) (-10110.689) [-10109.174] * (-10108.862) [-10104.690] (-10119.092) (-10108.878) -- 0:13:02
749000 -- (-10115.568) (-10111.850) [-10107.933] (-10115.129) * (-10112.401) (-10110.485) (-10121.484) [-10116.063] -- 0:12:59
750000 -- (-10121.441) [-10105.694] (-10125.388) (-10119.008) * (-10116.817) (-10111.030) [-10105.892] (-10114.592) -- 0:12:56
Average standard deviation of split frequencies: 0.001884
751000 -- (-10120.623) (-10101.738) (-10118.127) [-10109.371] * (-10107.459) [-10115.661] (-10122.919) (-10112.359) -- 0:12:53
752000 -- [-10107.625] (-10107.237) (-10118.947) (-10116.693) * (-10105.561) [-10116.223] (-10110.288) (-10110.498) -- 0:12:50
753000 -- [-10109.989] (-10105.111) (-10100.260) (-10109.908) * (-10111.678) (-10112.033) [-10118.474] (-10119.741) -- 0:12:47
754000 -- (-10111.330) (-10114.797) [-10108.931] (-10111.695) * [-10101.376] (-10120.681) (-10109.325) (-10107.367) -- 0:12:44
755000 -- (-10107.747) [-10109.691] (-10120.534) (-10106.509) * (-10117.251) (-10103.414) [-10103.802] (-10102.959) -- 0:12:41
Average standard deviation of split frequencies: 0.001871
756000 -- (-10108.558) [-10103.395] (-10112.162) (-10107.569) * (-10111.694) (-10126.941) [-10099.259] (-10104.732) -- 0:12:38
757000 -- [-10096.913] (-10100.531) (-10115.162) (-10113.436) * (-10112.651) (-10123.847) (-10109.902) [-10104.959] -- 0:12:35
758000 -- (-10116.103) (-10114.963) [-10107.730] (-10105.262) * (-10109.662) [-10116.113] (-10101.889) (-10099.743) -- 0:12:31
759000 -- (-10105.558) [-10113.468] (-10116.650) (-10106.578) * (-10115.638) (-10111.046) [-10113.577] (-10102.207) -- 0:12:28
760000 -- (-10122.051) (-10125.508) (-10123.371) [-10108.754] * [-10106.362] (-10101.595) (-10111.485) (-10111.909) -- 0:12:25
Average standard deviation of split frequencies: 0.001825
761000 -- (-10106.958) (-10106.245) [-10107.479] (-10128.284) * [-10114.327] (-10117.430) (-10115.174) (-10103.118) -- 0:12:22
762000 -- (-10112.697) (-10120.035) [-10106.221] (-10103.315) * (-10122.788) (-10112.053) [-10113.883] (-10104.938) -- 0:12:19
763000 -- (-10113.152) (-10111.858) [-10104.401] (-10116.081) * (-10109.036) (-10113.921) (-10120.193) [-10103.827] -- 0:12:16
764000 -- (-10120.113) (-10109.620) [-10105.676] (-10119.236) * (-10105.961) (-10108.175) [-10109.108] (-10109.195) -- 0:12:13
765000 -- (-10114.239) [-10116.503] (-10115.767) (-10111.765) * (-10115.175) (-10110.360) (-10129.733) [-10107.624] -- 0:12:10
Average standard deviation of split frequencies: 0.001709
766000 -- (-10099.135) (-10118.100) [-10102.501] (-10112.174) * [-10115.829] (-10111.688) (-10114.091) (-10110.669) -- 0:12:07
767000 -- (-10104.505) [-10109.277] (-10105.725) (-10122.674) * (-10122.028) (-10105.748) (-10113.485) [-10108.913] -- 0:12:03
768000 -- (-10111.507) [-10111.392] (-10107.566) (-10124.292) * (-10114.319) (-10104.483) [-10108.426] (-10107.864) -- 0:12:00
769000 -- (-10114.605) (-10127.467) [-10110.458] (-10108.219) * [-10110.130] (-10114.836) (-10107.149) (-10112.784) -- 0:11:57
770000 -- (-10108.521) (-10117.543) [-10113.278] (-10108.442) * (-10109.939) (-10104.983) [-10110.687] (-10107.505) -- 0:11:54
Average standard deviation of split frequencies: 0.001767
771000 -- (-10109.059) [-10110.214] (-10110.033) (-10113.731) * (-10121.948) (-10110.427) [-10104.057] (-10121.442) -- 0:11:51
772000 -- (-10109.317) (-10118.556) [-10109.699] (-10112.283) * (-10106.417) (-10112.640) [-10111.672] (-10115.168) -- 0:11:48
773000 -- (-10108.036) (-10112.155) (-10113.008) [-10103.380] * [-10111.287] (-10110.442) (-10109.241) (-10125.728) -- 0:11:45
774000 -- (-10105.845) [-10110.063] (-10120.636) (-10111.944) * (-10105.565) (-10109.558) [-10120.589] (-10126.331) -- 0:11:42
775000 -- (-10109.872) (-10108.327) (-10117.016) [-10107.975] * [-10109.012] (-10113.842) (-10117.312) (-10121.754) -- 0:11:39
Average standard deviation of split frequencies: 0.001519
776000 -- (-10110.077) [-10107.806] (-10114.357) (-10109.032) * (-10109.958) (-10103.942) [-10113.928] (-10130.633) -- 0:11:35
777000 -- (-10114.760) (-10108.280) (-10123.213) [-10111.279] * [-10104.404] (-10113.980) (-10109.453) (-10108.345) -- 0:11:32
778000 -- (-10111.725) (-10112.659) (-10112.108) [-10100.229] * (-10114.677) (-10105.597) (-10109.007) [-10106.541] -- 0:11:29
779000 -- (-10108.525) [-10110.030] (-10119.474) (-10107.581) * [-10112.655] (-10112.295) (-10116.222) (-10108.280) -- 0:11:26
780000 -- (-10096.224) (-10107.759) (-10120.078) [-10107.440] * (-10119.135) [-10108.852] (-10106.016) (-10103.910) -- 0:11:23
Average standard deviation of split frequencies: 0.001275
781000 -- (-10117.186) (-10107.163) (-10102.251) [-10109.780] * (-10112.292) (-10109.536) [-10108.457] (-10117.625) -- 0:11:20
782000 -- (-10108.438) (-10109.362) [-10098.505] (-10107.474) * (-10100.779) [-10099.676] (-10119.393) (-10108.844) -- 0:11:17
783000 -- (-10106.396) (-10117.631) [-10107.363] (-10103.411) * [-10108.411] (-10104.381) (-10110.934) (-10120.840) -- 0:11:14
784000 -- [-10113.627] (-10109.834) (-10109.596) (-10118.738) * (-10107.280) [-10104.047] (-10114.283) (-10132.616) -- 0:11:11
785000 -- (-10120.566) (-10109.775) [-10115.302] (-10109.175) * (-10107.509) [-10100.458] (-10108.510) (-10115.659) -- 0:11:08
Average standard deviation of split frequencies: 0.001100
786000 -- (-10115.200) (-10134.962) [-10102.834] (-10121.246) * (-10107.775) [-10106.834] (-10113.150) (-10118.156) -- 0:11:04
787000 -- (-10114.787) (-10117.275) (-10104.367) [-10105.774] * (-10101.903) [-10109.750] (-10114.602) (-10126.189) -- 0:11:02
788000 -- (-10127.034) (-10107.307) (-10112.191) [-10103.191] * (-10115.803) (-10106.698) [-10106.869] (-10105.984) -- 0:10:58
789000 -- (-10119.350) (-10107.832) (-10106.185) [-10097.798] * (-10107.646) (-10102.263) (-10108.581) [-10117.768] -- 0:10:55
790000 -- [-10109.434] (-10104.415) (-10127.330) (-10114.683) * (-10126.822) (-10109.850) (-10097.925) [-10107.333] -- 0:10:52
Average standard deviation of split frequencies: 0.001159
791000 -- (-10119.734) [-10099.582] (-10104.344) (-10111.307) * (-10113.957) [-10109.742] (-10111.422) (-10112.893) -- 0:10:49
792000 -- (-10113.287) [-10114.339] (-10116.789) (-10101.245) * [-10116.440] (-10114.623) (-10103.970) (-10105.732) -- 0:10:46
793000 -- (-10112.325) [-10113.569] (-10104.877) (-10104.684) * (-10110.428) (-10120.206) (-10118.388) [-10118.068] -- 0:10:43
794000 -- (-10114.258) [-10103.935] (-10123.168) (-10113.858) * (-10116.595) (-10119.399) (-10117.200) [-10109.332] -- 0:10:40
795000 -- [-10116.798] (-10105.270) (-10121.442) (-10109.548) * (-10121.918) (-10111.283) (-10113.287) [-10106.293] -- 0:10:37
Average standard deviation of split frequencies: 0.001283
796000 -- [-10112.449] (-10105.058) (-10111.720) (-10110.884) * (-10111.930) (-10111.842) (-10111.659) [-10108.939] -- 0:10:34
797000 -- (-10107.067) (-10107.084) (-10114.312) [-10097.465] * [-10103.905] (-10110.205) (-10106.016) (-10109.457) -- 0:10:30
798000 -- [-10102.034] (-10104.202) (-10123.401) (-10105.996) * [-10101.871] (-10102.808) (-10113.799) (-10104.895) -- 0:10:27
799000 -- (-10111.184) (-10103.898) (-10111.893) [-10111.791] * [-10110.503] (-10108.390) (-10133.146) (-10120.050) -- 0:10:24
800000 -- (-10117.185) (-10116.713) (-10107.469) [-10112.426] * (-10120.933) (-10117.380) (-10128.247) [-10108.144] -- 0:10:21
Average standard deviation of split frequencies: 0.001178
801000 -- [-10109.163] (-10114.255) (-10113.681) (-10119.050) * (-10107.735) [-10111.917] (-10109.192) (-10120.766) -- 0:10:18
802000 -- (-10104.306) [-10105.115] (-10113.806) (-10105.419) * (-10111.750) (-10108.616) [-10104.834] (-10120.952) -- 0:10:15
803000 -- (-10101.884) (-10111.897) [-10108.711] (-10111.920) * (-10113.020) (-10115.128) (-10107.553) [-10110.240] -- 0:10:12
804000 -- (-10110.909) (-10113.086) (-10113.618) [-10113.131] * (-10122.919) (-10117.335) (-10103.276) [-10109.677] -- 0:10:09
805000 -- [-10103.364] (-10121.220) (-10117.234) (-10117.049) * (-10117.038) (-10100.322) (-10109.793) [-10113.942] -- 0:10:06
Average standard deviation of split frequencies: 0.000975
806000 -- (-10114.220) (-10110.322) (-10127.024) [-10109.815] * (-10105.804) (-10110.641) [-10109.415] (-10128.205) -- 0:10:02
807000 -- (-10111.866) (-10110.306) (-10115.761) [-10103.740] * (-10109.217) (-10119.717) [-10107.344] (-10110.092) -- 0:09:59
808000 -- [-10109.335] (-10106.968) (-10117.485) (-10107.852) * (-10114.651) (-10110.068) (-10115.084) [-10102.291] -- 0:09:56
809000 -- [-10107.649] (-10102.745) (-10114.781) (-10132.264) * (-10109.009) (-10128.064) (-10118.881) [-10112.567] -- 0:09:53
810000 -- (-10122.627) [-10105.859] (-10109.475) (-10109.118) * [-10102.953] (-10099.541) (-10114.342) (-10122.825) -- 0:09:50
Average standard deviation of split frequencies: 0.001034
811000 -- (-10115.128) (-10106.198) [-10107.949] (-10114.062) * [-10105.267] (-10117.298) (-10110.455) (-10120.654) -- 0:09:47
812000 -- (-10111.100) [-10099.163] (-10113.186) (-10111.514) * (-10118.541) [-10109.664] (-10117.576) (-10109.709) -- 0:09:44
813000 -- (-10120.940) [-10108.502] (-10126.585) (-10106.616) * (-10107.963) (-10114.185) (-10110.620) [-10108.829] -- 0:09:41
814000 -- (-10107.697) [-10108.243] (-10127.811) (-10123.132) * (-10109.831) [-10108.291] (-10123.387) (-10105.092) -- 0:09:38
815000 -- [-10107.525] (-10123.384) (-10121.040) (-10115.760) * [-10109.296] (-10107.546) (-10113.898) (-10115.063) -- 0:09:34
Average standard deviation of split frequencies: 0.001187
816000 -- (-10111.550) (-10118.399) [-10108.695] (-10111.282) * (-10118.145) (-10108.074) (-10123.198) [-10109.689] -- 0:09:31
817000 -- (-10118.018) [-10101.055] (-10105.819) (-10107.161) * (-10107.053) [-10111.606] (-10111.869) (-10106.933) -- 0:09:28
818000 -- (-10126.286) (-10117.325) (-10105.158) [-10113.714] * (-10115.527) (-10104.897) (-10114.749) [-10097.933] -- 0:09:25
819000 -- (-10131.631) (-10118.998) [-10107.955] (-10118.150) * (-10111.780) (-10105.562) [-10104.717] (-10112.840) -- 0:09:22
820000 -- (-10121.424) (-10110.852) (-10105.334) [-10111.074] * (-10113.431) [-10104.490] (-10106.748) (-10106.829) -- 0:09:19
Average standard deviation of split frequencies: 0.000989
821000 -- (-10120.534) (-10113.737) (-10123.027) [-10107.522] * (-10112.036) [-10106.953] (-10109.312) (-10101.921) -- 0:09:16
822000 -- (-10124.380) (-10118.055) [-10097.492] (-10116.427) * (-10109.793) [-10109.530] (-10104.763) (-10104.570) -- 0:09:13
823000 -- (-10107.197) (-10124.079) [-10102.896] (-10105.390) * (-10111.350) [-10120.265] (-10110.093) (-10118.543) -- 0:09:10
824000 -- [-10099.428] (-10112.847) (-10108.359) (-10111.565) * (-10109.617) (-10107.128) (-10126.688) [-10117.046] -- 0:09:07
825000 -- (-10111.963) (-10123.566) [-10105.101] (-10105.566) * (-10097.734) [-10114.005] (-10119.505) (-10117.390) -- 0:09:03
Average standard deviation of split frequencies: 0.001078
826000 -- (-10109.592) (-10104.038) (-10114.878) [-10108.493] * (-10107.955) [-10113.445] (-10113.368) (-10115.299) -- 0:09:00
827000 -- [-10104.862] (-10114.494) (-10106.843) (-10109.483) * (-10111.358) [-10103.673] (-10112.505) (-10121.837) -- 0:08:57
828000 -- (-10111.423) [-10104.713] (-10116.575) (-10112.334) * (-10111.753) (-10110.509) [-10111.468] (-10137.521) -- 0:08:54
829000 -- (-10115.444) (-10111.413) [-10105.669] (-10109.255) * (-10107.582) (-10112.853) (-10118.900) [-10108.331] -- 0:08:51
830000 -- [-10111.160] (-10109.894) (-10112.878) (-10115.501) * (-10107.110) (-10107.541) (-10120.404) [-10100.833] -- 0:08:48
Average standard deviation of split frequencies: 0.001261
831000 -- (-10108.690) (-10107.421) [-10112.906] (-10106.782) * (-10112.621) (-10122.965) [-10105.559] (-10109.133) -- 0:08:45
832000 -- (-10111.859) [-10106.454] (-10108.117) (-10121.323) * [-10108.368] (-10117.954) (-10111.428) (-10103.776) -- 0:08:42
833000 -- [-10110.043] (-10115.833) (-10121.226) (-10111.035) * (-10106.416) (-10109.894) (-10104.341) [-10114.465] -- 0:08:39
834000 -- [-10113.940] (-10112.717) (-10113.350) (-10113.397) * [-10112.175] (-10103.207) (-10104.163) (-10113.162) -- 0:08:35
835000 -- (-10113.997) (-10114.943) (-10117.383) [-10108.946] * (-10109.781) (-10109.947) (-10112.740) [-10105.726] -- 0:08:32
Average standard deviation of split frequencies: 0.001284
836000 -- (-10113.453) (-10106.980) (-10123.623) [-10109.815] * [-10113.786] (-10107.257) (-10124.309) (-10107.471) -- 0:08:29
837000 -- (-10113.534) [-10110.229] (-10118.730) (-10104.950) * (-10131.000) [-10102.205] (-10109.625) (-10114.766) -- 0:08:26
838000 -- (-10116.173) (-10115.928) (-10113.394) [-10106.540] * [-10111.956] (-10101.160) (-10099.268) (-10104.988) -- 0:08:23
839000 -- (-10101.473) [-10109.102] (-10110.779) (-10113.537) * (-10107.967) (-10098.136) [-10104.298] (-10113.291) -- 0:08:20
840000 -- (-10115.689) [-10103.332] (-10100.837) (-10119.893) * (-10106.480) [-10109.312] (-10108.886) (-10109.143) -- 0:08:17
Average standard deviation of split frequencies: 0.001308
841000 -- (-10114.111) [-10106.642] (-10105.378) (-10109.513) * (-10104.104) [-10101.355] (-10102.394) (-10105.802) -- 0:08:14
842000 -- (-10120.940) (-10114.324) [-10113.177] (-10113.934) * [-10110.728] (-10132.547) (-10105.325) (-10105.285) -- 0:08:11
843000 -- (-10129.880) (-10110.859) (-10107.495) [-10106.423] * (-10117.156) [-10118.024] (-10113.958) (-10119.547) -- 0:08:07
844000 -- (-10120.288) [-10112.667] (-10108.710) (-10108.675) * (-10115.407) [-10104.394] (-10109.377) (-10097.458) -- 0:08:05
845000 -- (-10138.865) [-10117.150] (-10117.337) (-10107.976) * (-10125.391) (-10110.595) [-10105.714] (-10123.233) -- 0:08:01
Average standard deviation of split frequencies: 0.001207
846000 -- (-10113.123) [-10109.010] (-10114.493) (-10104.464) * [-10111.141] (-10111.659) (-10107.058) (-10107.987) -- 0:07:58
847000 -- (-10104.038) (-10111.021) [-10111.365] (-10120.403) * (-10119.668) (-10110.668) [-10107.893] (-10107.658) -- 0:07:55
848000 -- (-10102.486) [-10104.327] (-10112.435) (-10123.339) * (-10108.465) (-10112.345) (-10123.137) [-10105.750] -- 0:07:52
849000 -- [-10104.386] (-10107.785) (-10107.685) (-10114.458) * (-10108.809) [-10105.779] (-10120.098) (-10111.753) -- 0:07:49
850000 -- (-10110.742) (-10103.053) [-10105.091] (-10122.186) * (-10122.523) [-10103.377] (-10117.563) (-10121.367) -- 0:07:46
Average standard deviation of split frequencies: 0.001201
851000 -- [-10111.041] (-10103.631) (-10107.424) (-10124.710) * (-10113.931) [-10104.539] (-10124.568) (-10108.900) -- 0:07:43
852000 -- (-10104.743) (-10105.163) (-10114.552) [-10108.634] * [-10116.234] (-10126.414) (-10107.284) (-10108.333) -- 0:07:39
853000 -- (-10105.167) [-10120.043] (-10113.882) (-10115.909) * [-10108.463] (-10112.859) (-10109.346) (-10109.612) -- 0:07:37
854000 -- (-10109.124) [-10099.564] (-10101.489) (-10116.947) * (-10099.940) (-10115.434) (-10125.339) [-10106.579] -- 0:07:33
855000 -- (-10103.127) [-10115.972] (-10110.944) (-10115.875) * (-10109.478) (-10117.929) (-10115.693) [-10105.107] -- 0:07:30
Average standard deviation of split frequencies: 0.001254
856000 -- (-10107.350) (-10107.608) (-10121.960) [-10105.228] * (-10109.408) [-10110.645] (-10106.627) (-10115.489) -- 0:07:27
857000 -- (-10114.335) [-10097.857] (-10116.866) (-10111.459) * (-10121.317) (-10102.296) (-10122.336) [-10117.278] -- 0:07:24
858000 -- (-10107.864) [-10105.996] (-10103.614) (-10116.780) * (-10110.592) (-10107.730) [-10112.212] (-10103.869) -- 0:07:21
859000 -- (-10104.089) [-10103.147] (-10112.842) (-10116.240) * (-10124.154) [-10105.172] (-10101.427) (-10109.077) -- 0:07:18
860000 -- (-10108.910) (-10117.188) [-10104.870] (-10112.254) * (-10118.947) (-10106.118) (-10113.123) [-10105.111] -- 0:07:15
Average standard deviation of split frequencies: 0.001643
861000 -- (-10110.324) (-10113.319) [-10111.361] (-10125.182) * (-10104.756) [-10097.900] (-10117.806) (-10102.638) -- 0:07:12
862000 -- [-10110.702] (-10110.886) (-10110.802) (-10111.897) * (-10105.222) (-10110.954) (-10114.542) [-10101.009] -- 0:07:09
863000 -- (-10120.440) (-10115.085) (-10103.670) [-10110.075] * (-10100.408) (-10121.208) [-10108.910] (-10114.129) -- 0:07:05
864000 -- (-10115.590) [-10104.027] (-10110.071) (-10108.679) * (-10121.065) (-10112.371) (-10108.880) [-10114.088] -- 0:07:02
865000 -- [-10102.482] (-10109.141) (-10110.464) (-10110.049) * (-10121.903) [-10108.052] (-10104.596) (-10119.860) -- 0:06:59
Average standard deviation of split frequencies: 0.001603
866000 -- (-10104.314) (-10114.470) (-10110.309) [-10103.583] * (-10123.967) (-10116.472) [-10114.935] (-10105.929) -- 0:06:56
867000 -- [-10113.429] (-10106.599) (-10112.794) (-10114.042) * (-10109.569) (-10109.746) [-10105.480] (-10107.446) -- 0:06:53
868000 -- (-10103.505) (-10107.789) (-10116.874) [-10106.973] * (-10111.779) [-10111.245] (-10109.827) (-10117.236) -- 0:06:50
869000 -- (-10111.954) (-10098.270) (-10130.450) [-10106.191] * (-10118.890) (-10122.854) [-10108.414] (-10104.476) -- 0:06:47
870000 -- (-10107.088) [-10108.648] (-10109.664) (-10114.376) * (-10109.371) [-10108.551] (-10105.749) (-10103.685) -- 0:06:44
Average standard deviation of split frequencies: 0.001444
871000 -- [-10100.060] (-10124.443) (-10107.880) (-10110.866) * (-10115.130) (-10099.187) [-10113.618] (-10108.393) -- 0:06:41
872000 -- (-10106.268) (-10118.239) (-10112.042) [-10117.957] * (-10106.205) (-10104.599) (-10105.456) [-10108.165] -- 0:06:37
873000 -- (-10110.997) (-10106.549) [-10107.927] (-10120.104) * (-10112.502) (-10108.606) (-10107.484) [-10106.161] -- 0:06:34
874000 -- [-10107.626] (-10113.658) (-10116.838) (-10114.189) * (-10122.126) (-10124.156) [-10101.790] (-10114.411) -- 0:06:31
875000 -- (-10122.849) (-10117.900) (-10106.017) [-10102.136] * (-10104.785) [-10104.676] (-10105.720) (-10118.259) -- 0:06:28
Average standard deviation of split frequencies: 0.001345
876000 -- [-10119.437] (-10114.839) (-10108.451) (-10117.122) * [-10108.978] (-10103.572) (-10113.327) (-10118.846) -- 0:06:25
877000 -- [-10106.180] (-10105.419) (-10113.696) (-10107.350) * (-10121.129) [-10097.780] (-10109.318) (-10116.932) -- 0:06:22
878000 -- (-10112.539) (-10113.765) [-10106.956] (-10115.677) * (-10125.534) [-10106.219] (-10108.990) (-10113.978) -- 0:06:19
879000 -- [-10100.712] (-10127.080) (-10108.980) (-10127.725) * (-10111.108) (-10126.352) (-10107.918) [-10103.740] -- 0:06:16
880000 -- [-10109.999] (-10113.436) (-10114.887) (-10108.184) * (-10106.963) (-10116.250) [-10114.247] (-10114.496) -- 0:06:13
Average standard deviation of split frequencies: 0.001487
881000 -- (-10107.551) (-10115.165) [-10115.179] (-10109.273) * (-10114.754) (-10138.614) (-10104.827) [-10100.868] -- 0:06:09
882000 -- (-10114.869) [-10125.353] (-10106.663) (-10107.622) * [-10109.067] (-10118.311) (-10117.479) (-10108.241) -- 0:06:06
883000 -- (-10117.030) (-10130.387) [-10103.270] (-10107.124) * [-10102.232] (-10116.288) (-10122.039) (-10111.621) -- 0:06:03
884000 -- (-10109.920) [-10118.679] (-10115.120) (-10101.925) * (-10112.614) (-10109.551) (-10134.379) [-10112.233] -- 0:06:00
885000 -- (-10112.508) [-10112.448] (-10109.365) (-10107.374) * (-10107.276) (-10108.220) [-10106.026] (-10119.007) -- 0:05:57
Average standard deviation of split frequencies: 0.001626
886000 -- (-10114.059) (-10118.939) [-10105.304] (-10099.710) * (-10116.990) [-10103.345] (-10106.813) (-10111.526) -- 0:05:54
887000 -- (-10107.168) (-10115.354) (-10110.858) [-10106.640] * (-10110.270) (-10110.706) [-10107.582] (-10121.559) -- 0:05:51
888000 -- (-10111.270) (-10111.091) [-10114.472] (-10108.362) * (-10122.381) [-10104.544] (-10100.877) (-10103.878) -- 0:05:48
889000 -- (-10109.732) [-10102.040] (-10108.293) (-10108.862) * (-10116.083) (-10113.499) [-10098.841] (-10122.534) -- 0:05:45
890000 -- [-10106.259] (-10125.208) (-10121.492) (-10102.386) * (-10104.923) (-10114.479) (-10123.945) [-10106.510] -- 0:05:41
Average standard deviation of split frequencies: 0.001941
891000 -- [-10100.060] (-10114.906) (-10113.120) (-10106.755) * (-10108.276) (-10108.335) [-10114.038] (-10110.590) -- 0:05:38
892000 -- [-10099.792] (-10102.311) (-10099.671) (-10102.390) * (-10109.167) (-10118.838) [-10113.293] (-10110.763) -- 0:05:35
893000 -- (-10106.068) (-10113.320) [-10119.929] (-10118.866) * [-10102.905] (-10122.296) (-10110.800) (-10111.047) -- 0:05:32
894000 -- (-10126.696) (-10116.987) (-10109.291) [-10103.487] * (-10113.151) [-10108.255] (-10121.130) (-10107.042) -- 0:05:29
895000 -- (-10122.007) (-10117.909) (-10121.978) [-10102.890] * (-10115.032) [-10104.978] (-10113.996) (-10117.421) -- 0:05:26
Average standard deviation of split frequencies: 0.002280
896000 -- (-10119.567) [-10104.247] (-10113.155) (-10109.561) * (-10111.493) (-10102.957) (-10108.694) [-10105.722] -- 0:05:23
897000 -- (-10112.500) [-10110.320] (-10102.391) (-10112.588) * (-10114.454) (-10120.524) (-10113.620) [-10107.315] -- 0:05:20
898000 -- (-10122.590) (-10110.766) [-10108.772] (-10113.133) * (-10135.355) (-10107.723) (-10106.204) [-10106.171] -- 0:05:17
899000 -- (-10119.629) (-10103.546) (-10103.413) [-10104.766] * [-10118.544] (-10107.172) (-10105.743) (-10115.998) -- 0:05:14
900000 -- (-10119.288) (-10104.147) (-10115.380) [-10114.027] * [-10110.668] (-10115.468) (-10110.440) (-10106.924) -- 0:05:11
Average standard deviation of split frequencies: 0.002268
901000 -- (-10113.318) (-10120.937) (-10110.406) [-10108.962] * (-10134.203) (-10110.413) [-10108.813] (-10122.474) -- 0:05:07
902000 -- (-10111.770) (-10117.893) [-10113.071] (-10110.467) * (-10107.293) (-10110.501) (-10115.411) [-10106.474] -- 0:05:04
903000 -- [-10109.766] (-10108.595) (-10121.781) (-10111.475) * (-10116.810) (-10106.537) (-10113.528) [-10109.970] -- 0:05:01
904000 -- (-10111.825) (-10109.356) (-10126.962) [-10105.948] * (-10113.012) (-10105.053) [-10114.320] (-10113.300) -- 0:04:58
905000 -- (-10103.321) [-10105.326] (-10125.219) (-10101.100) * (-10110.517) (-10119.662) (-10114.004) [-10105.269] -- 0:04:55
Average standard deviation of split frequencies: 0.002052
906000 -- (-10113.097) [-10112.820] (-10116.458) (-10108.111) * (-10120.545) [-10115.103] (-10110.916) (-10106.748) -- 0:04:52
907000 -- (-10113.304) (-10123.217) (-10110.850) [-10106.516] * (-10108.532) (-10117.075) (-10110.732) [-10107.233] -- 0:04:49
908000 -- (-10104.365) (-10108.131) (-10122.853) [-10105.413] * (-10104.885) (-10117.953) [-10101.945] (-10120.243) -- 0:04:46
909000 -- (-10108.931) (-10116.084) (-10108.078) [-10098.263] * (-10107.171) (-10115.522) (-10112.065) [-10106.745] -- 0:04:43
910000 -- (-10118.217) [-10109.252] (-10098.520) (-10117.445) * [-10107.614] (-10117.415) (-10116.893) (-10110.421) -- 0:04:39
Average standard deviation of split frequencies: 0.001956
911000 -- (-10115.789) (-10110.887) [-10100.854] (-10123.329) * (-10110.943) [-10110.015] (-10116.001) (-10117.186) -- 0:04:36
912000 -- (-10110.760) (-10105.681) (-10107.266) [-10100.188] * (-10118.435) [-10098.024] (-10117.985) (-10114.498) -- 0:04:33
913000 -- (-10115.910) (-10126.169) [-10106.912] (-10103.494) * (-10112.267) [-10116.699] (-10125.062) (-10108.857) -- 0:04:30
914000 -- [-10111.683] (-10137.998) (-10112.459) (-10105.380) * (-10115.400) (-10112.685) (-10116.661) [-10108.620] -- 0:04:27
915000 -- (-10109.392) (-10107.364) [-10101.824] (-10111.497) * [-10108.071] (-10113.354) (-10120.815) (-10105.037) -- 0:04:24
Average standard deviation of split frequencies: 0.002030
916000 -- (-10110.613) [-10112.874] (-10112.826) (-10124.930) * (-10109.512) (-10109.177) (-10127.445) [-10116.088] -- 0:04:21
917000 -- (-10102.122) (-10120.623) [-10101.009] (-10114.946) * (-10119.089) (-10109.555) (-10102.527) [-10113.698] -- 0:04:18
918000 -- [-10110.570] (-10110.982) (-10115.470) (-10115.347) * (-10114.866) (-10113.214) [-10123.055] (-10118.616) -- 0:04:15
919000 -- (-10112.592) (-10107.803) [-10115.007] (-10115.694) * [-10112.953] (-10101.422) (-10114.482) (-10120.038) -- 0:04:11
920000 -- (-10128.619) [-10104.138] (-10101.464) (-10114.832) * (-10121.609) (-10112.842) [-10106.135] (-10111.016) -- 0:04:08
Average standard deviation of split frequencies: 0.002048
921000 -- (-10109.130) (-10127.793) (-10115.120) [-10112.881] * [-10106.168] (-10114.102) (-10103.095) (-10107.633) -- 0:04:05
922000 -- (-10112.597) (-10120.432) [-10105.155] (-10115.548) * (-10132.853) (-10112.020) [-10111.889] (-10103.308) -- 0:04:02
923000 -- (-10111.721) [-10106.416] (-10106.259) (-10110.233) * (-10098.820) [-10100.856] (-10122.315) (-10105.464) -- 0:03:59
924000 -- (-10105.896) [-10109.124] (-10112.826) (-10127.201) * (-10117.599) [-10101.942] (-10116.422) (-10105.185) -- 0:03:56
925000 -- (-10111.625) (-10106.520) [-10118.154] (-10111.908) * (-10110.649) (-10109.558) (-10109.313) [-10108.346] -- 0:03:53
Average standard deviation of split frequencies: 0.002206
926000 -- (-10106.691) (-10112.313) [-10110.350] (-10117.325) * [-10101.593] (-10106.814) (-10098.371) (-10116.068) -- 0:03:50
927000 -- (-10102.118) (-10112.406) [-10102.779] (-10120.556) * (-10111.103) (-10101.653) [-10119.367] (-10115.775) -- 0:03:47
928000 -- (-10120.902) [-10102.185] (-10113.878) (-10120.510) * (-10106.956) (-10114.037) (-10106.563) [-10106.596] -- 0:03:43
929000 -- (-10109.109) (-10108.416) (-10121.614) [-10109.583] * (-10118.677) (-10121.219) [-10104.590] (-10116.186) -- 0:03:40
930000 -- (-10119.416) (-10112.195) (-10115.257) [-10106.411] * (-10109.528) (-10124.741) (-10106.331) [-10108.087] -- 0:03:37
Average standard deviation of split frequencies: 0.002082
931000 -- (-10125.485) (-10110.088) (-10123.889) [-10104.794] * (-10116.066) [-10108.045] (-10102.401) (-10124.597) -- 0:03:34
932000 -- [-10121.553] (-10115.060) (-10110.544) (-10114.208) * (-10112.785) (-10111.643) [-10100.887] (-10115.644) -- 0:03:31
933000 -- (-10128.697) [-10119.505] (-10115.062) (-10108.088) * (-10115.319) (-10118.334) (-10108.621) [-10112.178] -- 0:03:28
934000 -- (-10114.023) (-10113.322) [-10105.594] (-10109.535) * (-10117.692) (-10108.648) (-10123.383) [-10103.416] -- 0:03:25
935000 -- (-10110.179) (-10113.580) (-10107.385) [-10114.492] * (-10116.041) (-10114.103) [-10110.352] (-10109.894) -- 0:03:22
Average standard deviation of split frequencies: 0.002294
936000 -- (-10129.597) [-10109.878] (-10112.820) (-10123.058) * (-10116.126) (-10110.704) (-10108.927) [-10106.622] -- 0:03:19
937000 -- [-10102.674] (-10119.486) (-10105.722) (-10105.405) * (-10136.449) (-10108.257) [-10104.611] (-10111.277) -- 0:03:15
938000 -- [-10105.740] (-10118.523) (-10121.923) (-10123.331) * (-10109.956) [-10105.851] (-10109.278) (-10113.853) -- 0:03:12
939000 -- (-10113.341) (-10122.210) [-10106.559] (-10103.591) * [-10113.415] (-10103.874) (-10110.942) (-10105.787) -- 0:03:09
940000 -- (-10110.433) (-10106.210) (-10106.262) [-10105.712] * (-10104.330) (-10117.073) (-10106.804) [-10109.732] -- 0:03:06
Average standard deviation of split frequencies: 0.002283
941000 -- [-10105.349] (-10114.017) (-10110.486) (-10110.863) * (-10104.782) (-10113.226) (-10115.831) [-10103.109] -- 0:03:03
942000 -- [-10104.500] (-10107.177) (-10106.006) (-10123.905) * (-10115.111) (-10106.028) [-10103.142] (-10115.562) -- 0:03:00
943000 -- (-10108.434) (-10102.794) [-10109.902] (-10120.703) * (-10108.253) (-10101.671) [-10108.432] (-10101.795) -- 0:02:57
944000 -- (-10117.073) (-10122.728) (-10104.982) [-10101.998] * (-10108.817) [-10106.938] (-10103.556) (-10107.287) -- 0:02:54
945000 -- [-10113.577] (-10108.827) (-10108.892) (-10103.101) * (-10103.986) (-10114.259) [-10101.134] (-10109.167) -- 0:02:51
Average standard deviation of split frequencies: 0.002824
946000 -- (-10116.849) (-10104.869) (-10104.531) [-10106.388] * (-10109.982) (-10119.927) [-10105.625] (-10109.540) -- 0:02:47
947000 -- (-10123.674) (-10107.789) (-10118.107) [-10105.084] * (-10111.767) (-10112.741) [-10112.798] (-10107.414) -- 0:02:44
948000 -- [-10104.235] (-10108.059) (-10109.920) (-10115.723) * (-10114.046) [-10107.348] (-10121.713) (-10106.400) -- 0:02:41
949000 -- [-10102.105] (-10120.400) (-10112.728) (-10113.663) * (-10102.971) (-10104.790) [-10115.426] (-10112.694) -- 0:02:38
950000 -- [-10124.385] (-10115.159) (-10126.044) (-10107.215) * [-10105.634] (-10121.970) (-10103.118) (-10128.683) -- 0:02:35
Average standard deviation of split frequencies: 0.002837
951000 -- (-10117.688) [-10118.496] (-10105.713) (-10111.180) * [-10103.439] (-10108.088) (-10112.555) (-10104.146) -- 0:02:32
952000 -- (-10106.973) (-10113.661) [-10101.201] (-10119.326) * (-10120.818) (-10112.542) (-10120.031) [-10104.940] -- 0:02:29
953000 -- (-10121.661) (-10114.269) [-10115.149] (-10114.147) * [-10108.078] (-10123.685) (-10103.941) (-10108.576) -- 0:02:26
954000 -- (-10121.601) (-10111.322) (-10118.455) [-10112.834] * (-10117.949) [-10114.236] (-10107.496) (-10104.838) -- 0:02:23
955000 -- (-10121.561) (-10111.306) [-10101.906] (-10101.637) * (-10107.126) [-10116.514] (-10112.425) (-10099.399) -- 0:02:19
Average standard deviation of split frequencies: 0.002931
956000 -- [-10111.458] (-10114.933) (-10108.193) (-10101.452) * (-10114.911) [-10112.199] (-10120.886) (-10116.021) -- 0:02:16
957000 -- (-10110.080) (-10111.170) (-10121.036) [-10108.471] * (-10117.525) (-10106.209) (-10124.554) [-10108.090] -- 0:02:13
958000 -- (-10112.940) [-10106.710] (-10108.688) (-10110.083) * (-10100.496) [-10105.141] (-10126.723) (-10117.823) -- 0:02:10
959000 -- [-10115.399] (-10108.579) (-10097.595) (-10108.700) * (-10117.393) (-10112.104) [-10106.924] (-10109.834) -- 0:02:07
960000 -- [-10111.907] (-10102.193) (-10112.685) (-10102.244) * (-10126.455) (-10108.821) (-10114.543) [-10107.293] -- 0:02:04
Average standard deviation of split frequencies: 0.002781
961000 -- (-10113.297) (-10107.668) [-10108.146] (-10110.503) * (-10108.775) [-10109.839] (-10108.469) (-10117.226) -- 0:02:01
962000 -- (-10113.693) (-10112.936) [-10112.627] (-10105.713) * [-10110.096] (-10119.612) (-10105.805) (-10106.881) -- 0:01:58
963000 -- (-10120.766) [-10097.488] (-10108.344) (-10108.923) * (-10117.665) [-10120.010] (-10113.349) (-10105.757) -- 0:01:55
964000 -- (-10124.264) (-10111.824) [-10111.376] (-10108.984) * (-10117.912) (-10125.253) (-10111.404) [-10106.879] -- 0:01:51
965000 -- (-10120.118) (-10108.866) (-10121.217) [-10108.993] * (-10110.144) (-10111.359) [-10107.995] (-10102.230) -- 0:01:48
Average standard deviation of split frequencies: 0.002576
966000 -- (-10111.634) (-10115.162) (-10113.669) [-10110.999] * [-10110.830] (-10114.391) (-10111.141) (-10113.298) -- 0:01:45
967000 -- (-10123.178) (-10110.296) [-10111.007] (-10113.751) * [-10120.968] (-10110.095) (-10115.929) (-10112.519) -- 0:01:42
968000 -- [-10107.795] (-10115.831) (-10116.042) (-10100.572) * [-10118.928] (-10101.322) (-10109.585) (-10125.779) -- 0:01:39
969000 -- (-10110.310) (-10117.103) [-10105.933] (-10109.013) * [-10101.256] (-10102.590) (-10116.119) (-10112.511) -- 0:01:36
970000 -- (-10119.320) (-10110.219) (-10103.877) [-10117.870] * [-10108.308] (-10112.168) (-10119.721) (-10108.192) -- 0:01:33
Average standard deviation of split frequencies: 0.002671
971000 -- (-10113.769) (-10112.890) (-10129.736) [-10108.637] * (-10113.358) [-10102.665] (-10104.710) (-10106.362) -- 0:01:30
972000 -- (-10107.770) [-10111.059] (-10113.712) (-10107.587) * (-10108.831) (-10119.208) [-10099.576] (-10123.206) -- 0:01:27
973000 -- (-10116.583) [-10103.012] (-10113.072) (-10112.299) * (-10119.615) (-10106.303) (-10104.314) [-10110.661] -- 0:01:23
974000 -- (-10103.176) (-10114.863) [-10109.985] (-10099.779) * (-10100.665) (-10109.440) (-10118.643) [-10111.727] -- 0:01:20
975000 -- (-10113.746) (-10122.159) (-10105.053) [-10111.524] * (-10106.466) [-10108.310] (-10108.513) (-10105.250) -- 0:01:17
Average standard deviation of split frequencies: 0.002871
976000 -- (-10108.423) (-10113.352) (-10100.864) [-10110.747] * (-10110.529) [-10110.635] (-10112.583) (-10105.792) -- 0:01:14
977000 -- (-10109.328) (-10121.351) (-10109.539) [-10108.433] * (-10109.153) (-10108.239) (-10108.524) [-10107.109] -- 0:01:11
978000 -- (-10103.263) (-10112.851) (-10112.923) [-10102.143] * (-10111.628) [-10114.672] (-10106.892) (-10120.278) -- 0:01:08
979000 -- (-10105.590) [-10100.282] (-10109.180) (-10104.136) * (-10114.294) [-10112.534] (-10105.204) (-10116.905) -- 0:01:05
980000 -- (-10106.558) (-10101.282) (-10113.882) [-10106.332] * (-10120.335) [-10100.549] (-10111.134) (-10116.766) -- 0:01:02
Average standard deviation of split frequencies: 0.002617
981000 -- (-10118.123) (-10102.128) (-10100.153) [-10110.278] * (-10109.725) [-10100.001] (-10111.613) (-10117.205) -- 0:00:59
982000 -- (-10110.286) (-10122.918) (-10107.812) [-10104.829] * (-10119.899) (-10118.523) (-10111.271) [-10103.359] -- 0:00:55
983000 -- [-10100.125] (-10111.026) (-10114.198) (-10106.389) * [-10115.471] (-10106.381) (-10124.373) (-10106.664) -- 0:00:52
984000 -- [-10108.741] (-10106.808) (-10120.670) (-10122.247) * (-10109.595) [-10098.615] (-10118.365) (-10104.240) -- 0:00:49
985000 -- (-10102.829) [-10107.487] (-10109.734) (-10117.693) * (-10121.898) (-10107.568) [-10122.886] (-10112.782) -- 0:00:46
Average standard deviation of split frequencies: 0.002656
986000 -- [-10112.850] (-10111.248) (-10107.537) (-10105.792) * (-10114.714) [-10107.890] (-10110.910) (-10105.005) -- 0:00:43
987000 -- (-10111.032) (-10110.170) [-10119.798] (-10103.962) * (-10116.337) (-10115.859) [-10108.128] (-10103.460) -- 0:00:40
988000 -- (-10107.384) (-10102.922) (-10114.274) [-10113.030] * (-10118.338) (-10113.802) [-10110.098] (-10106.528) -- 0:00:37
989000 -- (-10125.920) [-10110.224] (-10108.273) (-10109.586) * (-10106.735) (-10102.310) (-10117.706) [-10101.121] -- 0:00:34
990000 -- [-10116.756] (-10129.965) (-10113.514) (-10124.599) * [-10114.693] (-10106.932) (-10106.158) (-10111.805) -- 0:00:31
Average standard deviation of split frequencies: 0.002617
991000 -- [-10107.582] (-10113.462) (-10109.778) (-10105.115) * [-10103.617] (-10106.552) (-10118.371) (-10097.699) -- 0:00:27
992000 -- (-10100.154) (-10116.566) [-10106.988] (-10104.079) * [-10105.710] (-10110.474) (-10114.046) (-10122.261) -- 0:00:24
993000 -- (-10112.030) (-10111.364) [-10105.033] (-10114.957) * (-10100.586) [-10108.020] (-10121.071) (-10113.389) -- 0:00:21
994000 -- (-10102.843) (-10103.939) [-10110.966] (-10124.568) * (-10112.365) (-10113.054) (-10110.708) [-10110.125] -- 0:00:18
995000 -- [-10110.459] (-10113.924) (-10116.833) (-10117.863) * (-10106.408) (-10110.520) (-10118.938) [-10099.739] -- 0:00:15
Average standard deviation of split frequencies: 0.002787
996000 -- [-10109.526] (-10115.139) (-10113.440) (-10109.678) * (-10107.542) (-10101.043) (-10121.000) [-10111.810] -- 0:00:12
997000 -- [-10106.486] (-10114.598) (-10107.186) (-10112.716) * (-10108.315) [-10110.805] (-10109.610) (-10119.606) -- 0:00:09
998000 -- (-10114.337) (-10123.716) (-10110.098) [-10097.598] * [-10107.366] (-10111.759) (-10112.189) (-10120.434) -- 0:00:06
999000 -- (-10115.841) (-10123.780) (-10109.861) [-10096.281] * (-10117.003) (-10125.085) [-10113.880] (-10114.569) -- 0:00:03
1000000 -- (-10104.915) (-10111.448) (-10100.321) [-10103.970] * (-10109.424) [-10107.347] (-10116.933) (-10115.093) -- 0:00:00
Average standard deviation of split frequencies: 0.002617
Analysis completed in 51 mins 51 seconds
Analysis used 3107.26 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -10089.58
Likelihood of best state for "cold" chain of run 2 was -10090.00
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
23.8 % ( 22 %) Dirichlet(Revmat{all})
36.5 % ( 24 %) Slider(Revmat{all})
13.0 % ( 16 %) Dirichlet(Pi{all})
23.4 % ( 24 %) Slider(Pi{all})
25.6 % ( 20 %) Multiplier(Alpha{1,2})
40.4 % ( 27 %) Multiplier(Alpha{3})
28.7 % ( 25 %) Slider(Pinvar{all})
1.4 % ( 1 %) ExtSPR(Tau{all},V{all})
1.2 % ( 2 %) ExtTBR(Tau{all},V{all})
2.4 % ( 0 %) NNI(Tau{all},V{all})
2.5 % ( 0 %) ParsSPR(Tau{all},V{all})
25.9 % ( 24 %) Multiplier(V{all})
18.3 % ( 17 %) Nodeslider(V{all})
23.6 % ( 23 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
24.4 % ( 28 %) Dirichlet(Revmat{all})
37.0 % ( 19 %) Slider(Revmat{all})
12.8 % ( 27 %) Dirichlet(Pi{all})
23.0 % ( 26 %) Slider(Pi{all})
25.9 % ( 25 %) Multiplier(Alpha{1,2})
40.4 % ( 28 %) Multiplier(Alpha{3})
28.9 % ( 21 %) Slider(Pinvar{all})
1.3 % ( 1 %) ExtSPR(Tau{all},V{all})
1.2 % ( 0 %) ExtTBR(Tau{all},V{all})
2.5 % ( 0 %) NNI(Tau{all},V{all})
2.5 % ( 2 %) ParsSPR(Tau{all},V{all})
25.9 % ( 27 %) Multiplier(V{all})
18.2 % ( 26 %) Nodeslider(V{all})
23.5 % ( 28 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.72 0.49 0.32
2 | 166344 0.74 0.52
3 | 166919 166555 0.76
4 | 166795 166750 166637
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.72 0.49 0.32
2 | 166347 0.74 0.52
3 | 166840 167264 0.75
4 | 166637 166796 166116
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -10104.56
| 2 2 |
| 1 2 2 |
| 2 2 2 |
| * 1 1 1 1 1 1 1|
|1 1 1 2 |
| 1 22 2 2 121 2 1 |
| 22 1 22 2 2 1 1 11111 22212 2 * |
| 22 1 12 1 2 1 2 1 1 * 1 |
| 2 2*1 111 2 12 1 *11 2 * |
| 11 1 2 2 22 1121 1 2 12 2|
| 1 2 2 2 2 2 1 2 |
| 1 1 2 |
|2 1 1 |
| |
| 2 1 2 2 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -10110.71
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -10099.67 -10119.81
2 -10100.19 -10122.33
--------------------------------------
TOTAL -10099.90 -10121.72
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 8.712615 0.443487 7.429567 9.971106 8.666142 915.88 944.14 1.001
r(A<->C){all} 0.171104 0.000167 0.147341 0.196500 0.170936 657.74 786.85 1.000
r(A<->G){all} 0.238035 0.000227 0.209421 0.268090 0.237725 753.04 808.25 1.002
r(A<->T){all} 0.121690 0.000120 0.101374 0.143463 0.121390 750.78 866.16 1.000
r(C<->G){all} 0.086293 0.000111 0.065996 0.106374 0.085743 913.95 925.77 1.000
r(C<->T){all} 0.306111 0.000300 0.272822 0.340617 0.305777 695.49 752.91 1.002
r(G<->T){all} 0.076767 0.000092 0.058932 0.095508 0.076489 1030.79 1045.69 1.000
pi(A){all} 0.288423 0.000066 0.272913 0.305252 0.288331 761.88 787.10 1.002
pi(C){all} 0.242808 0.000059 0.228529 0.258006 0.242826 878.44 901.95 1.000
pi(G){all} 0.226230 0.000071 0.209656 0.241788 0.226209 603.04 687.17 1.000
pi(T){all} 0.242539 0.000067 0.227203 0.258865 0.242487 794.06 846.52 1.002
alpha{1,2} 0.648669 0.003697 0.535503 0.772369 0.645780 1043.15 1150.48 1.000
alpha{3} 6.863887 2.934357 3.952215 10.399960 6.642874 1364.80 1432.90 1.000
pinvar{all} 0.012587 0.000070 0.000033 0.028559 0.011293 1125.60 1215.38 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C1
2 -- C10
3 -- C11
4 -- C12
5 -- C13
6 -- C14
7 -- C15
8 -- C16
9 -- C17
10 -- C18
11 -- C19
12 -- C2
13 -- C3
14 -- C4
15 -- C5
16 -- C6
17 -- C7
18 -- C8
19 -- C9
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
-------------------------
1 -- .******************
2 -- .*.................
3 -- ..*................
4 -- ...*...............
5 -- ....*..............
6 -- .....*.............
7 -- ......*............
8 -- .......*...........
9 -- ........*..........
10 -- .........*.........
11 -- ..........*........
12 -- ...........*.......
13 -- ............*......
14 -- .............*.....
15 -- ..............*....
16 -- ...............*...
17 -- ................*..
18 -- .................*.
19 -- ..................*
20 -- ...**..............
21 -- ...***.............
22 -- .*................*
23 -- ............*.*....
24 -- .*..........*.*.***
25 -- ..*............*...
26 -- ......*..**........
27 -- .******..**.*.*****
28 -- .******.***********
29 -- .******..**********
30 -- ..****.........*...
31 -- .*****......*.*****
32 -- .*...............**
33 -- .........**........
34 -- ...........*.*.....
35 -- .*..............***
36 -- ............*.*.*..
37 -- .*..........*.*..**
-------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
20 3002 1.000000 0.000000 1.000000 1.000000 2
21 3002 1.000000 0.000000 1.000000 1.000000 2
22 3002 1.000000 0.000000 1.000000 1.000000 2
23 3002 1.000000 0.000000 1.000000 1.000000 2
24 3002 1.000000 0.000000 1.000000 1.000000 2
25 3002 1.000000 0.000000 1.000000 1.000000 2
26 3002 1.000000 0.000000 1.000000 1.000000 2
27 3002 1.000000 0.000000 1.000000 1.000000 2
28 3000 0.999334 0.000942 0.998668 1.000000 2
29 3000 0.999334 0.000942 0.998668 1.000000 2
30 3000 0.999334 0.000942 0.998668 1.000000 2
31 2981 0.993005 0.003298 0.990673 0.995336 2
32 2932 0.976682 0.000942 0.976016 0.977348 2
33 2915 0.971019 0.001413 0.970020 0.972019 2
34 2794 0.930713 0.007537 0.925383 0.936043 2
35 2045 0.681213 0.015546 0.670220 0.692205 2
36 537 0.178881 0.010835 0.171219 0.186542 2
37 420 0.139907 0.004711 0.136576 0.143238 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.008017 0.000013 0.001878 0.014966 0.007507 1.001 2
length{all}[2] 0.003779 0.000011 0.000000 0.010260 0.002864 1.000 2
length{all}[3] 0.306426 0.001630 0.227914 0.383395 0.305588 1.000 2
length{all}[4] 0.001521 0.000002 0.000000 0.004575 0.001049 1.000 2
length{all}[5] 0.001511 0.000002 0.000001 0.004507 0.001036 1.000 2
length{all}[6] 0.103090 0.000507 0.059778 0.147274 0.102802 1.000 2
length{all}[7] 0.227941 0.001546 0.154465 0.306900 0.225323 1.000 2
length{all}[8] 0.007204 0.000012 0.001817 0.014116 0.006651 1.000 2
length{all}[9] 0.015963 0.000029 0.005760 0.026327 0.015417 1.002 2
length{all}[10] 0.129213 0.000432 0.090695 0.172609 0.128372 1.000 2
length{all}[11] 0.145228 0.000501 0.101560 0.190533 0.144946 1.000 2
length{all}[12] 0.001516 0.000002 0.000001 0.004578 0.001067 1.000 2
length{all}[13] 0.015635 0.000128 0.000033 0.037734 0.013695 1.000 2
length{all}[14] 0.001521 0.000002 0.000000 0.004525 0.001053 1.000 2
length{all}[15] 0.026132 0.000148 0.000873 0.047326 0.026257 1.000 2
length{all}[16] 0.226114 0.001288 0.156067 0.295696 0.224242 1.000 2
length{all}[17] 0.474026 0.006878 0.312013 0.636671 0.475514 1.000 2
length{all}[18] 0.233508 0.001654 0.155251 0.312668 0.231460 1.000 2
length{all}[19] 0.008581 0.000019 0.000884 0.017311 0.007965 1.000 2
length{all}[20] 0.144160 0.000632 0.095887 0.193273 0.142839 1.000 2
length{all}[21] 0.237010 0.002571 0.146814 0.350312 0.235474 1.000 2
length{all}[22] 0.216417 0.001589 0.143042 0.295493 0.215803 1.000 2
length{all}[23] 1.117047 0.034796 0.760153 1.477107 1.115090 1.003 2
length{all}[24] 2.319535 0.165139 1.570408 3.122879 2.286941 1.000 2
length{all}[25] 0.189555 0.002354 0.092970 0.283645 0.187144 1.000 2
length{all}[26] 0.456542 0.007780 0.287249 0.633631 0.452403 1.001 2
length{all}[27] 0.766878 0.011265 0.557335 0.967828 0.760875 1.000 2
length{all}[28] 0.013779 0.000026 0.004842 0.024022 0.013131 1.000 2
length{all}[29] 0.078042 0.000379 0.038162 0.114085 0.078733 1.000 2
length{all}[30] 0.391765 0.015412 0.157053 0.649159 0.384426 1.000 2
length{all}[31] 0.374868 0.014982 0.154115 0.624239 0.365923 1.000 2
length{all}[32] 0.192047 0.004120 0.068024 0.318543 0.190065 1.000 2
length{all}[33] 0.079056 0.000943 0.021423 0.138846 0.077689 1.000 2
length{all}[34] 0.021624 0.000253 0.000013 0.052427 0.018337 1.001 2
length{all}[35] 0.219291 0.014660 0.000606 0.433725 0.209588 1.000 2
length{all}[36] 0.109135 0.005016 0.000139 0.241519 0.096887 1.005 2
length{all}[37] 0.107785 0.005707 0.000311 0.238878 0.093511 1.017 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.002617
Maximum standard deviation of split frequencies = 0.015546
Average PSRF for parameter values (excluding NA and >10.0) = 1.001
Maximum PSRF for parameter values = 1.017
Clade credibility values:
/---------------------------------------------------------------------- C1 (1)
|
|---------------------------------------------------------------------- C16 (8)
|
| /-------- C10 (2)
| /--100--+
| | \-------- C9 (19)
| /--98--+
| | \---------------- C8 (18)
| /---68--+
| | \----------------------- C7 (17)
| /--100--+
| | | /-------- C3 (13)
| | \----------100---------+
| | \-------- C5 (15)
| |
+ /---99--+ /-------- C11 (3)
| | | /------100-----+
| | | | \-------- C6 (16)
| | | |
| | \------100------+ /-------- C12 (4)
| | | /--100--+
| /--100-+ | | \-------- C13 (5)
| | | \--100-+
| | | \---------------- C14 (6)
| | |
| | | /---------------- C15 (7)
| | | |
| /--100--+ \--------------100-------------+ /-------- C18 (10)
| | | \---97--+
| | | \-------- C19 (11)
| | |
\--100--+ | /-------- C2 (12)
| \----------------------93---------------------+
| \-------- C4 (14)
|
\-------------------------------------------------------------- C17 (9)
Phylogram (based on average branch lengths):
/ C1 (1)
|
| C16 (8)
|
| / C10 (2)
| /--+
| | \ C9 (19)
| /--+
| | \--- C8 (18)
| /--+
| | \------- C7 (17)
| /----------------------------------+
| | | / C3 (13)
| | \----------------+
| | \ C5 (15)
| |
+ /-----+ /----- C11 (3)
| | | /--+
| | | | \---- C6 (16)
| | | |
| | \----+ / C12 (4)
| | | /-+
|/-----------+ | | \ C13 (5)
|| | \---+
|| | \-- C14 (6)
|| |
|| | /--- C15 (7)
|| | |
|+ \------+/-- C18 (10)
|| \+
|| \-- C19 (11)
||
||/ C2 (12)
|\+
| \ C4 (14)
|
\ C17 (9)
|--------------| 1.000 expected changes per site
Calculating tree probabilities...
Credible sets of trees (35 trees sampled):
90 % credible set contains 5 trees
95 % credible set contains 8 trees
99 % credible set contains 17 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Thu Oct 27 00:03:59 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.08 sec, SCORE=999, Nseq=19, Len=549
C1 -MSDNGTQNQRSASR-ITFGGPSDSTDNNQDGGRSGARPKQR--------
C2 MSDNGPQPSQRSAPR-ITFGGPTDSIDNNQNGGRNGARPKQR--------
C3 -------------MSSVKFE-------------ASGRTGRTP--------
C4 MSDNGPQPSQRSAPR-ITFGGPTDSIDNNQNGGRNGARPKQR--------
C5 -------------MSSVKFE-------------ASGRTGRTP--------
C6 MSGRNKPRSGTSTPK-VTFKQESDGSD-SESERRASIRPKNK-------G
C7 -------------MASVSFE------------QQRGRSGRVP--------
C8 -------------MASVSFD-----------DQPRGRGGRMP--------
C9 -------------MASVSFD-----------DQSRGRSGRVP--------
C10 -------------MASVSFD-----------DQSRGRSGRVP--------
C11 MSGRNRSRPGTPSPK-VTFKQESDGSD-SESDRRNGNRTGARSKNNNGRS
C12 MSGRRTPR---NQPQ-VSFKNESD-SD-SESGARSQSRGRNSNNNNNGGN
C13 MSGRRTPR---NQPQ-VSFKNESD-SD-SESGARSQSRGRNSNNNNNGGN
C14 MSGRRTPR---NQPQ-VSFKNESD-SD-SESGQRSQSRGRNPNNNNNGGN
C15 -------MATPAAPRTISFA---DNND-NQTNQQQRGRGRNP--------
C16 -MSDNGTQNQRSASR-ITFGGPSDSTDNNQDGGRSGARPKQR--------
C17 -MSDNGPQNQRSAPR-ITFGGPSDSTDNNQDGGRSGVRPKQR--------
C18 -------MATPAAPRAVSFA---DNND-NSNNNQSRGRGRNP--------
C19 -------MATPAAPRAVTFG---DNNDNNTNTQQSRGRGRTP--------
:.*
C1 ----------RPQGLPNNTASWFTALTQHGKEGL-KFPQGQGVPINTNSG
C2 ----------RPQGLPNNTASWFTALTQHGKEEL-RFSRGQGVPINTNSG
C3 -------------------LSYFAPITVTSGKNLWNVLPKNAVPSGKG-K
C4 ----------RPQGLPNNTASWFTALTQHGKEEL-RFSRGQGVPINTNSG
C5 -------------------LSYFAPITVTSGKNLWNVLPKNAVPSGKG-K
C6 ----SSFKPEKPKAAPPQNVSWFAPLVQTGKNDL-RFPRGQGVPISQGVD
C7 -------------------LSFFYPVIVTDNTPFWKVMPNNAVPNGMG-T
C8 -------------------LSYYYPIMVTDGKPLFKVLQSNAVPTGKG-T
C9 -------------------LSFYNPVMVTDDKPLFKVMPHNAVPTGKG-N
C10 -------------------LSFYNPVMVTDDKPLFKVMPHNAVPTGKG-N
C11 ----SAPRPEKPKAAPLQNVSWFAPLVQTGKSEL-RFARGEGVPVSQGVD
C12 GGARRKDKPEKPRAAPAQNVSWFLPIVQTGKQDL-RFARGEGVPVSQGVD
C13 GGARRKDKPEKPRAAPAQNVSWFLPIVQTGKQDL-RFARGEGVPVSQGVD
C14 GGARRKDKPEKPRAAPQQNVSWFLPLVQTGKNDL-RFPRGQGVPITQGVD
C15 ----------KPRPAPNNTVSWYTGLTQHGKNPL-AFPPGQGVPLNANST
C16 ----------RPQGLPNNTASWFTALTQHGKEGL-KFPQGQGVPINTNSG
C17 ----------RPQGLPNNTASWFTALTQHGKEGL-KFPQGQGVPINTNSG
C18 ----------KPRPAPNNTVSWYTGLTQHGKVSL-SFPPGQGVPLNANST
C19 ----------KPRPAPNNTVSWYTGLTQHGKVPL-SFPPGQGVPLNANST
*:: : . : . :.** .
C1 RDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG
C2 PDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG
C3 ANQQVGYWSEQTR-WKMQKGERVEKPSFWHFYFLGTGPHADAKFRERIQG
C4 PDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG
C5 ANQQVGYWSEQTR-WKMQKGERVEKPSFWHFYFLGTGPHADAKFRERIQG
C6 PVYNHGYWLRTQRSFQKG-GKLVQANPRWYFYYTGTGRYGDMRYGTKNPD
C7 KDERIGYWNEQKR-WRMRKGQRIDLPSKWHFYFLGTGPHKEASFRQRLDG
C8 KEQQIGYWNMQAR-WRMVKGVRKDLDPKWHFYYLGTGPHADAPFRQRLEG
C9 KSQQIGYWNMQPR-WRMVKGQRKDLTPKWHFYYLGTGPHAEAPFRQKLDG
C10 KSQQIGYWNMQPR-WRMVKGQRKDLTPKWHFYYLGTGPHAEAPFRQKLDG
C11 PTYEHGYWLRTQRSFQKG-GKQVLANPRWYFYYTGTGRFGDLRFGTKNPD
C12 ITYQHGYWLRRQRTFNKG-GKQVQANPRWFFYYTGTGPYEGLRYGSRNND
C13 ITYQHGYWLRRQRTFNKG-GKQVQANPRWFFYYTGTGPYEGLRYGSRNND
C14 PTFQHGYWLFRQRSFQKG-GKQVMANPRWYFYYTGTGPYEGLRYGSKSND
C15 TAQNAGYWRRQDRKINTGNGVK-QLSPRWFFYYTGTGPEANLPFRSVKDG
C16 TDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG
C17 RDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG
C18 PAQNAGYWRRQDRKINTGNGTK-SLAPRWYFYYTGTGPEANLPFRAVKDG
C19 PAQNAGYWRRQDRKINTGNGTK-QLAPRWFFYYTGTGPEANLPFRAVKDG
. **: * . * . *.**: *** : .
C1 IVWVAIEGALNTPKDHIGTRNPNNNAAIV---LQLPQGTTLP-KGFYAEG
C2 IVWVATEGALNTPKDHIGTRNPNNNAATV---LQLPQGTTLP-KGFYAEG
C3 VVWVSKANADLKP-TDLGTRSKARSLIIPKFDIELPDDIEIV-DKSSAPN
C4 IVWVATEGALNTPKDHIGTRNPNNNAATV---LQLPQGTTLP-KGFYAEG
C5 VVWVSKANADLKP-TDLGTRSKARSLITPKFDIELPDDIEIV-DKSSAPN
C6 LIWVGEEGANVNRVGDMGTRNPNNDGAIS---VQLHDG--IP-KGFYAEG
C7 VYWVAVNGAKTQP-TSLGSRKKSAAMMVPQFSVSLPSNIQVQTENASAPA
C8 VFWVAVQGSKTEP-TGLGVRKRNAPLLKPQFSFKLPVNVEIQEDSASRPN
C9 VFWVAVQGSDTQP-TGLGVRKRNQPLIKPQFAVKLPANIEIQEENASKPN
C10 VFWVAVQGSDTQP-TGLGVRKRNQPLIKPQFAVKLPANIEIQEENASKPN
C11 IVWVGQEGANINRLGDMGTRNPSNDSAIP---VQLTGG--IP-KGFYAEG
C12 IIWVGNEGANVNRLGDMGTRNPANDAGIP---VQLAEG--IP-KGFYAEG
C13 IIWVGNEGANVNRLGDMGTRNPANDAGIP---VQLAEG--IP-KGFYAEG
C14 LIWVGNEGANVNRIGDMGTRNPANDAGLV---VQLADG--IP-KGFYAEG
C15 IVWVYEEGATDAP-SVFGTRNPANDAAIV---CQFAPGTLIP-KNFHIEG
C16 IVWVATEGALNTPKDHIGTRNPNNNAAIV---LQLPQGTTLP-KGFYAEG
C17 IVWVATEGALNTPKDHIGTRNPNNNAAIV---LQLPQGTTLP-KGFYAEG
C18 IIWVHEDGATDAP-STFGTRNPNNDAAIV---TQFAPGTKLP-KNFHIEG
C19 IVWVHEEGATDAP-STFGTRNPNNDAAIV---TQFAPGTKLP-KNFHIEG
: ** .: :* *. .: . : .
C1 SRSGSQASSR-----SSSRSRGNSRTSTPG--------------------
C2 SRGGSQASSR-----SSSRSRGNSRNSTPG--------------------
C3 SRGNSRSQSRGAKSGSKSRGNSQTRDNSKS-RDNSNNRGKSQSRNNSRSR
C4 SRGGSQASSR-----SSSRSRGNSRNSTPG--------------------
C5 SRGNSRSQSRGAKSGSKSRGNSQTRDNSKS-RDNSNNRGKSQSRNNSRSR
C6 RNSRSNSRNS-----SRNSSRASSQGNSRA--------------------
C7 SRNQSQNR-------SQSANRSQSRGPNQNVNQNQ----------NTNGN
C8 SRNPSSNRDR-----SQSGNRSASSGPKQGNSQNQ---NNSSQGNNSNNQ
C9 SRNPSTNRDR-----SQSGNRSASRGPQQGNTQNQNQNNNSSKGNQNNNQ
C10 SRNPSTNRDR-----SQSGNRSASRGPQQGNTQNQNQNNNSSKGNQNNNQ
C11 RGSRGNSRSS-----SRNSSRASSRGNSRA--------------------
C12 RNSRGNSRNS-----SRSSSRGSSNANSRN--------------------
C13 RNSRGNSRNS-----SRSSSRGSSNANSRN--------------------
C14 RNSRGNSRNS-----SRSSSRGSSNANSRN--------------------
C15 TGGNSQSSSR-----ASSNSRNSSRSNSRG----------------GRST
C16 SRSGSQASSR-----SSSRSRGNSRTSTPG--------------------
C17 SRNGSQASSR-----SSSRSRGNSRTSTPG--------------------
C18 TGGNSQSSSR-----ASSASRNSSRSNSRG----------------SRSG
C19 TGGNSQSSSR-----ASSASRGSSRSSSRG----------------ARSG
. . : . .. :
C1 -SSRGNSPARVASGGGE----TALALLLLDRLNQL---------ESKVSG
C2 -SSRGNSPARMASGGGE----TALALLLLDRLNQL---------ESKVSG
C3 GQQRNNNQQRQGSGNAGNNT-ADLAAAIVLALEKAGLARDT---EKAPKK
C4 -SSRGNSPARMAIGGGE----TALALLLLDRLNQL---------ESKVSG
C5 GQQRNNNQQRQGSGNAGNNT-ADLAAAIVLALEKAGLARDT---EKAPKK
C6 -GSRNASPGRNAPNVASGN--EPWMAYLVQKLEAL---------ENKVNG
C7 QRARSQSRNRGSNNNQPQNQ-VDIVAAVKAALQQLGVGNQNQGGTGKKSK
C8 QRSRNNSKSRGQNNQSNNSQ-ADIVAAVKQALKELGVSPQEK--KNKQKG
C9 QRSRNNSKSRSQNNSQPQNQQVDIVAAVKQALKELGVSPQEK--KQKQKG
C10 QRSRNNSKSRSQNNSQPQNQQVDIVAAVKQALKELGVSPQEK--KQKQKG
C11 -GSRGASPGRPAATPSA----EPWMAYLVQKLEKL---------ESQVNG
C12 -QSRSNSPGRGSAPPSGG---EPWMAYLIQKLENL---------EQRVDG
C13 -QSRSNSPGRGSAPPSGG---EPWMAYLIQKLENL---------EQRVDG
C14 -QSRSNSPGRGSAPPSGS---EPWMAYLIQKLENL---------EQRVDG
C15 SNSRGTSPVSHGVGSAESLAALPLLLDLQKRLADL------------ESG
C16 -SSRGNSPARVASGGGE----TALALLLLDRLNQL---------ESKVSG
C17 -SSRGNSPARVASGGGE----TALALLLLDRLNQL---------ESKVSG
C18 NSSRGTSPGPSGVGAVGG---EMLYLDLLNRLQAL------------ESG
C19 NSSRSASPGPAGIGAVGGDASSILYLSLLKRLEDL------------EAG
*. . : *
C1 KGQ-QQQGQTVTKKSASEASKKPRQ-------KRTATKQYNVTQAFGRRG
C2 KG--QQQGQTVTKKSAAEASKKPRQ-------KRTATKQYNVTQAFGRRG
C3 ESPNNNKKQKSRASSPAPAQSKNTDQLTKVVWKRVPDPSCNVKQCF---G
C4 KG--QQQGQTVTKKSAAEASKKPRQ-------KRTATKQYNVTQAFGRRG
C5 ESPNNNKKQKSRASSPAPAQSKNTDQLTKVVWKRMPDPSCNVKQCF---G
C6 PKE-TKKPVQVTKNEAAANAKKLRH-------KRTPHKGSGVTTNYGRRG
C7 SNSGVNTPKEQRAKSPAKTPPVQRKQMERPVWKRVPNSSENVTACF---G
C8 STSGNNTPKEQRSKSPAPSPNTQRKQIERPVWKRVPTSAEDVTVCF---G
C9 NTSGNNTPKEQRAKSPARSPSSPRKQLERPVWKRVPTEAENVTQCF---G
C10 NTSGNNTPKEQRAKSPARSPASPRKQLERPVWKRVPTEAENVTQCF---G
C11 TKPVTKNPLQVTKNEAAANAKKLRH-------KRTAHKGSGVTMNYGRRG
C12 KKS-DKQPVKVTKNVASENAKKLRH-------KRTAHKGSNATQNYGRRG
C13 KKS-DKQPVKVTKNVASENAKKLRH-------KRTAHKGSNATQNYGRRG
C14 KKS-DKQPVKVTKNVASENAKKLRH-------KRTAHKGSNVTQNYGRRG
C15 K---SKQPKVVTKKDASAAKNKMRH-------KRVATKNFNVTQAFGLRG
C16 KGQ-QQQGQTVTKKSASEASKKPRQ-------KRTATKQYNVTQAFGRRG
C17 KGQ-QQQGQTVTKKSASEASKKPRQ-------KRTATKQYNVTQAFGRRG
C18 KTK-QAQPKVITKKDAVAAKNKMRH-------KRVATKGFNMVQAFGLRG
C19 KS--KSAPKVVTKKDAAAAKNKMRH-------KRVATKSFNMVQAFGRRG
. . . ** . . : *
C1 PDQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG
C2 PEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG
C3 PRSTYQNFGDEDAVEKGVRAKHYPSWAELTPTTAALLFGGEVMTVEDGED
C4 PEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG
C5 PRSTYQNFGDEEAVEKGVRAKHYPSWAELTPNTAALLFGGEVMTVEDGED
C6 PGDLEGNFGDLNMLKLGTDDSRFPAAAQMAPNVASFLFMSHFSVREENDA
C7 PRDAVHNFGDSDVVHHGTDAKHWPQLAELIPTPAALAFGSEISTTEVGDK
C8 PRDTQQNFGDQDLVRHGVDAKHYPQLAEFVPGTAALLFGGEVSTRESGED
C9 PRDTLRNFGDRELTLRGVEAKNYPQIAEFVPTPAALLFGGEVSTREAGED
C10 PRDTLRNFGDRELTLRGVEAKNYPQIAEFVPTPAALLFGGEVSTREAGED
C11 PGDLEGNFGDLDMLKLGTDDPRFAAAAQMAPNVSSFLFMSHLSTREEGDA
C12 PGNLEGNFGDQEFLKLGTDDPRFPVVAQMAPNTSSFVFMSHFTPRYEADA
C13 PGNLEGNFGDQEFLKLGTDDPRFPVVAQMAPNTSSFVFMSHFTPRYEADA
C14 PGNLEGNFGDQDFLKLGTDDPRFPVVAQMAPNTSSFVFMSQFTPRYESDA
C15 PGPLQGNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLTHQSND
C16 PDQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG
C17 PDQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG
C18 PGDLQGNFGDLQLNKLGTEDPRWPQIAELAPSASAFIGMSQFKLTHQSND
C19 PGDLQGNFGDLQLNKLGTEDPRWPQIAELAPSASAFMGMSQFKLTHQSND
* **** : *. .:. *:: * ::: ... .
C1 T------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK
C2 T------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK
C3 I------VIQYTYQMRVPKTTPALQTFL----PQVSAFAN-----SGGDD
C4 T------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK
C5 I------VIQYTYQMRVPKTTPALQTFL----PQVSAFAN-----ASGDD
C6 L------WLHYKGAIKLPKDDPNYDQWTKILGENLNAYKNFPPVEPKKDK
C7 V------EITYTYKMKVDKADKNLPAFL----QQVSAYAQ-----P----
C8 V------EITFHYKLKVKKSDKNLPLFL----QQVSAYAL-----P----
C9 V------EITFHYKMKVKKDDKNLPLFL----QQVSAYAL-----P----
C10 V------EITFHYKMKVKKDDKNLPLFL----QQVSAYAL-----P----
C11 M------WLHYKGAIKLPKDDPNYDQWTKILAENLNAYRDFPPPAPKKDK
C12 L------WLDYTGSIKLPRDDPNFPQWEKLLAENIDAYKSFPPPKPKSDK
C13 L------WLDYTGSIKLPRDDPNFPQWEKLLAENIDAYKSFPPPKPKSDK
C14 L------WLDYTGSIKLPRDDPNFPQWEKLLAENLDAYKSFPPPKPKSDK
C15 DKGEPIYFLSYSGAIKLDPKNPNYKKWLELLEANIDAYKTF----PKKER
C16 T------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK
C17 T------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK
C18 TDGAPVYFLRYSGAIKLDPKNPNYNKWLELIEQNVDAYKTF----PKKEK
C19 ADGSPVYFLRYSGAIKLDPKNPNYQKWMELLEANIDAYKSF----PVKEK
: : ::: ::.*: .
C1 KKKTDEA-------------------------------------------
C2 KKKTDEA-------------------------------------------
C3 ASESGQD------------------------------------MPVVTSA
C4 KKKTDEA-------------------------------------------
C5 ESESGQE------------------------------------MPVVTSA
C6 KKKEEAS--VEVAVYEDAATGTDQPIVQKIWVKDDGVQTDDEWIGGDDTV
C7 --------------------------------------------------
C8 --------------------------------------------------
C9 --------------------------------------------------
C10 --------------------------------------------------
C11 KKKEETT--QETVIFEDASTGTDQP-VVKVWVKDQDAQTDDEWLGGDETV
C12 KKKSDKSDSAAGPSEDLQMQVVDPSGVQRIYMKDAADQTDDEWL-QDDTI
C13 KKKSDKSDSAAGPSEDLQMQVVDPSGVQRIYMKDAADQTDDEWL-QDDTI
C14 KKKSDKSDSATGPSADLQMQVVDPSGVQRIYMKDAADQTDDEWL-QDDTI
C15 KPKTTED---------------------------------GASASSSASQ
C16 KKKTDEA-------------------------------------------
C17 KKKTDEA-------------------------------------------
C18 KQKAPKE-------------------------------------------
C19 KQKADDN-----------------------------KQDSTEDSGDLFAE
C1 ----QPLPQR-KKLPTVTLLPAADMDD---FSRQLQNSMSGASADSTQA
C2 ----QPLPQRQKKQPIVTLLPAADMDD---FSRQLQNSMSGASADSTQA
C3 AESAAPAPASTPKLNPRAETFVPPKVDPNYFAGMKVEIMNKTISDDSTV
C4 ----QPLPQRQKKQPIVTLLPAADMDD---FSRQLQNSMSGASADSTQA
C5 AESAAPAPAPTPKLNPKAETFVPPKVDPNYFAGMKVEIMNKTISDDSTV
C6 YEEEDDKPKAQRRHKKRASTASR--VT----------VADPTNLANERS
C7 ----SQANQISSQLNPVAPVFTPGMDD-------SVEIIDQVFDTDV--
C8 ----SQAPNIPSQLNPIAPDFTPGFEM----VNETVEIIDQVYDTPDA-
C9 ----SQAPNVPSQLNPVAPDFTPSGVE---MVNETVEIIDQVYDSFDA-
C10 ----SQAPNVPSQLNPVAPDFTPSGVE---MVNETVEIIDQVYDSFDA-
C11 YEEEDDRPKTQRRHKKRGSTASR--VT----------IADPTNAGAERS
C12 YEDENDKPKAQRRQSIKKRNATHQRHV----------SIDGAAQSSA--
C13 YEDENDKPKAQRRQSIKKRNATHQRHV----------SIDGAAQSSA--
C14 YEDENDKPKAQRRQSIKKRNAQRHV------------SIDGSAQSSA--
C15 MEDVDAKPQRKPKSRVAGSITMRSGSS--------PALQDVNFDSEA--
C16 ----QPLPQR-KKQPTVTLLPAADMDD---FSRQLQNSMSGASADSTQA
C17 ----QPLPQRQKKQPTVTLLPAADMDD---FSRQLQNSMSGASADSTQA
C18 EPSDQMNVQPPKEQRVQGSITQRSRTP-------RPSVQPGPMTDVNTD
C19 VVASAMASQSQPQRAPKGSITQRSRAP-----RAPVSQMEDVNQTDDRQ
.
-- Starting log on Thu Oct 27 03:59:43 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus.result/original_alignment/codeml,JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C1 1647 sites
reading seq# 2 C2 1647 sites
reading seq# 3 C3 1647 sites
reading seq# 4 C4 1647 sites
reading seq# 5 C5 1647 sites
reading seq# 6 C6 1647 sites
reading seq# 7 C7 1647 sites
reading seq# 8 C8 1647 sites
reading seq# 9 C9 1647 sites
reading seq#10 C10 1647 sites
reading seq#11 C11 1647 sites
reading seq#12 C12 1647 sites
reading seq#13 C13 1647 sites
reading seq#14 C14 1647 sites
reading seq#15 C15 1647 sites
reading seq#16 C16 1647 sites
reading seq#17 C17 1647 sites
reading seq#18 C18 1647 sites
reading seq#19 C19 1647 sitesns = 19 ls = 1647
Reading sequences, sequential format..
Reading seq # 1: C1
Reading seq # 2: C2
Reading seq # 3: C3
Reading seq # 4: C4
Reading seq # 5: C5
Reading seq # 6: C6
Reading seq # 7: C7
Reading seq # 8: C8
Reading seq # 9: C9
Reading seq #10: C10
Reading seq #11: C11
Reading seq #12: C12
Reading seq #13: C13
Reading seq #14: C14
Reading seq #15: C15
Reading seq #16: C16
Reading seq #17: C17
Reading seq #18: C18
Reading seq #19: C19
Sites with gaps or missing data are removed.
387 ambiguity characters in seq. 1
384 ambiguity characters in seq. 2
348 ambiguity characters in seq. 3
384 ambiguity characters in seq. 4
348 ambiguity characters in seq. 5
258 ambiguity characters in seq. 6
474 ambiguity characters in seq. 7
438 ambiguity characters in seq. 8
423 ambiguity characters in seq. 9
423 ambiguity characters in seq. 10
243 ambiguity characters in seq. 11
237 ambiguity characters in seq. 12
237 ambiguity characters in seq. 13
243 ambiguity characters in seq. 14
378 ambiguity characters in seq. 15
387 ambiguity characters in seq. 16
384 ambiguity characters in seq. 17
402 ambiguity characters in seq. 18
345 ambiguity characters in seq. 19
213 sites are removed. 1 2 3 4 5 6 7 8 9 10 11 12 13 16 21 22 23 24 25 26 27 28 29 30 31 32 33 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 85 99 114 119 123 164 180 181 182 189 190 193 209 210 211 212 213 214 215 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 268 269 270 271 286 287 288 289 290 291 292 293 294 295 296 297 302 303 304 326 327 328 329 330 331 332 347 348 349 402 403 404 405 406 407 429 430 431 432 441 442 443 444 445 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 511 524 525 526 527 528 529 530 531 532 533 534 535 536 537 548 549
Sequences read..
Counting site patterns.. 0:00
Compressing, 335 patterns at 336 / 336 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 335 patterns at 336 / 336 sites (100.0%), 0:00
Counting codons..
1368 bytes for distance
326960 bytes for conP
29480 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(1, 16, ((((((((10, 9), 8), 7), (3, 5)), ((11, 6), ((12, 13), 14))), (15, (18, 19))), (2, 4)), 17)); MP score: 2127
2779160 bytes for conP, adjusted
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
22
0.019959 0.040021 0.098050 0.032230 0.034726 0.017064 0.034057 0.088395 0.059858 0.040079 0.046737 0.077730 0.019859 0.039648 0.098030 0.078725 0.069835 0.035112 0.103157 0.078633 0.093265 0.063810 0.042401 0.013010 0.013350 0.068037 0.079439 0.021574 0.022615 0.100652 0.078403 0.018800 0.010473 0.085279 0.086851 0.300000 0.670817 0.267082
ntime & nrate & np: 35 2 38
Bounds (np=38):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 13.904278
np = 38
lnL0 = -16439.018601
Iterating by ming2
Initial: fx= 16439.018601
x= 0.01996 0.04002 0.09805 0.03223 0.03473 0.01706 0.03406 0.08839 0.05986 0.04008 0.04674 0.07773 0.01986 0.03965 0.09803 0.07872 0.06983 0.03511 0.10316 0.07863 0.09327 0.06381 0.04240 0.01301 0.01335 0.06804 0.07944 0.02157 0.02261 0.10065 0.07840 0.01880 0.01047 0.08528 0.08685 0.30000 0.67082 0.26708
1 h-m-p 0.0000 0.0000 14540.6748 ++ 14239.272617 m 0.0000 43 | 1/38
2 h-m-p 0.0000 0.0000 3762.4638 ++ 14184.545244 m 0.0000 84 | 2/38
3 h-m-p 0.0000 0.0000 5743.1799 ++ 14180.794475 m 0.0000 125 | 3/38
4 h-m-p 0.0000 0.0000 6001.5050 ++ 13886.968825 m 0.0000 166 | 3/38
5 h-m-p 0.0000 0.0000 14471.0082 ++ 13842.549542 m 0.0000 207 | 3/38
6 h-m-p 0.0000 0.0000 7638.5587 ++ 13689.674341 m 0.0000 248 | 2/38
7 h-m-p 0.0000 0.0000 40262.0942
h-m-p: 2.72782362e-22 1.36391181e-21 4.02620942e+04 13689.674341
.. | 2/38
8 h-m-p 0.0000 0.0000 231225.1475 ---YCYYCYCYC 13684.644331 8 0.0000 341 | 2/38
9 h-m-p 0.0000 0.0000 5238.4783 ++ 13683.162303 m 0.0000 382 | 3/38
10 h-m-p 0.0000 0.0000 5452.0694 ++ 13650.811152 m 0.0000 423 | 3/38
11 h-m-p 0.0000 0.0000 32221.0344 ++ 13479.779568 m 0.0000 464 | 3/38
12 h-m-p 0.0000 0.0000 11438.1547 +YYCCC 13452.006658 4 0.0000 512 | 3/38
13 h-m-p 0.0000 0.0000 3699.1017 +YYYCC 13412.042215 4 0.0000 559 | 3/38
14 h-m-p 0.0000 0.0000 4748.4653 +YYCCC 13364.396317 4 0.0000 607 | 3/38
15 h-m-p 0.0000 0.0000 4024.8025 +YYYCYCCC 13308.788919 7 0.0000 659 | 3/38
16 h-m-p 0.0000 0.0000 5319.7796 +YYYYYC 13297.370416 5 0.0000 706 | 3/38
17 h-m-p 0.0000 0.0001 1424.5136 +YCCC 13264.433106 3 0.0001 753 | 3/38
18 h-m-p 0.0000 0.0001 1372.2020 +YCCC 13251.164264 3 0.0000 800 | 3/38
19 h-m-p 0.0000 0.0001 1361.4482 YCCC 13236.796713 3 0.0000 846 | 3/38
20 h-m-p 0.0000 0.0001 965.7259 CCCC 13229.961927 3 0.0000 893 | 3/38
21 h-m-p 0.0000 0.0001 898.7547 +YYCCC 13222.926674 4 0.0000 941 | 3/38
22 h-m-p 0.0000 0.0001 1378.4456 YCC 13218.497518 2 0.0000 985 | 3/38
23 h-m-p 0.0000 0.0001 619.5626 CCCC 13215.604385 3 0.0000 1032 | 3/38
24 h-m-p 0.0001 0.0003 472.4971 CC 13213.117559 1 0.0001 1075 | 3/38
25 h-m-p 0.0001 0.0019 213.4571 CYC 13211.386721 2 0.0001 1119 | 3/38
26 h-m-p 0.0000 0.0002 396.0234 CCCC 13210.345825 3 0.0000 1166 | 3/38
27 h-m-p 0.0002 0.0032 85.4705 CC 13209.673006 1 0.0002 1209 | 3/38
28 h-m-p 0.0001 0.0017 118.6158 YC 13209.228737 1 0.0001 1251 | 3/38
29 h-m-p 0.0003 0.0029 42.4516 +CC 13206.843743 1 0.0011 1295 | 3/38
30 h-m-p 0.0001 0.0003 124.8490 +YCC 13205.324120 2 0.0002 1340 | 3/38
31 h-m-p 0.0001 0.0004 62.7568 +YYYCC 13202.612781 4 0.0003 1387 | 3/38
32 h-m-p 0.0001 0.0003 43.3070 +CYYC 13196.899735 3 0.0002 1433 | 3/38
33 h-m-p 0.0000 0.0005 739.3904 ++YCCCC 13090.132633 4 0.0003 1483 | 3/38
34 h-m-p 0.0002 0.0010 754.3282 +YCCC 12868.874240 3 0.0008 1530 | 3/38
35 h-m-p 0.0009 0.0045 593.2562 +CCCCC 12273.179959 4 0.0029 1580 | 3/38
36 h-m-p 0.0012 0.0061 99.3411 CYCCC 12262.303399 4 0.0019 1628 | 3/38
37 h-m-p 0.0025 0.0130 74.8106 CYC 12256.552205 2 0.0028 1672 | 3/38
38 h-m-p 0.0088 0.0565 23.5296 YC 12254.891012 1 0.0044 1714 | 3/38
39 h-m-p 0.0043 0.0345 24.3115 CCC 12253.276672 2 0.0039 1759 | 3/38
40 h-m-p 0.0054 0.0272 16.7044 CCCC 12248.016541 3 0.0094 1806 | 3/38
41 h-m-p 0.0062 0.0750 25.3429 +CCCCC 12183.786288 4 0.0315 1856 | 3/38
42 h-m-p 0.0072 0.0361 53.4726 YCC 12089.579387 2 0.0170 1900 | 3/38
43 h-m-p 0.0035 0.0173 101.7603 YCCCC 12053.271385 4 0.0063 1948 | 3/38
44 h-m-p 0.0153 0.0764 21.2587 YCC 12050.614077 2 0.0102 1992 | 3/38
45 h-m-p 0.3799 2.4538 0.5732 ++ 11950.827300 m 2.4538 2033 | 3/38
46 h-m-p 0.0000 0.0000 50.8703
h-m-p: 4.12628997e-19 2.06314498e-18 5.08703054e+01 11950.827300
.. | 3/38
47 h-m-p 0.0000 0.0002 1306.7108 ++YYYCCCCC 11886.328183 7 0.0002 2160 | 3/38
48 h-m-p 0.0000 0.0001 1058.6721 ++ 11853.635767 m 0.0001 2201 | 3/38
49 h-m-p 0.0000 0.0000 11878.9313 ++ 11849.860935 m 0.0000 2242 | 4/38
50 h-m-p 0.0000 0.0000 3781.2808 +YYCYCCC 11777.495706 6 0.0000 2293 | 4/38
51 h-m-p 0.0000 0.0001 774.6883 YCYCCC 11771.815156 5 0.0000 2342 | 4/38
52 h-m-p 0.0000 0.0003 928.5103 +YCYCYC 11725.123526 5 0.0002 2392 | 4/38
53 h-m-p 0.0000 0.0001 4638.0591 YCCC 11701.112719 3 0.0000 2438 | 4/38
54 h-m-p 0.0001 0.0004 297.9701 +CYCCYC 11679.999224 5 0.0004 2489 | 4/38
55 h-m-p 0.0000 0.0001 1638.6714 ++ 11660.141693 m 0.0001 2530 | 5/38
56 h-m-p 0.0001 0.0007 744.6555 +YCYCCC 11628.952319 5 0.0004 2580 | 5/38
57 h-m-p 0.0001 0.0006 513.1059 YCCCC 11618.011066 4 0.0003 2628 | 5/38
58 h-m-p 0.0002 0.0010 276.9064 YCYCCC 11604.828739 5 0.0005 2677 | 4/38
59 h-m-p 0.0001 0.0006 723.5231 YCCC 11594.635974 3 0.0003 2723 | 4/38
60 h-m-p 0.0002 0.0010 129.8905 YCYCCC 11589.314753 5 0.0006 2772 | 4/38
61 h-m-p 0.0002 0.0008 216.9254 ++ 11574.303849 m 0.0008 2813 | 4/38
62 h-m-p -0.0000 -0.0000 47.9607
h-m-p: -1.25811422e-18 -6.29057108e-18 4.79606690e+01 11574.303849
.. | 4/38
63 h-m-p 0.0000 0.0000 21785.6060 CYYYYC 11566.267432 5 0.0000 2899 | 4/38
64 h-m-p 0.0000 0.0000 498.6012 +YYYCYCCC 11561.192181 7 0.0000 2951 | 4/38
65 h-m-p 0.0000 0.0000 2788.8789 YYCC 11557.139344 3 0.0000 2996 | 4/38
66 h-m-p 0.0000 0.0001 476.2813 +YCCC 11551.859930 3 0.0001 3043 | 3/38
67 h-m-p 0.0000 0.0001 404.5251 +YCCC 11549.080538 3 0.0001 3090 | 3/38
68 h-m-p 0.0001 0.0003 251.6348 YCYCCC 11546.070910 5 0.0002 3139 | 3/38
69 h-m-p 0.0000 0.0005 1622.1686 +CCCC 11535.453681 3 0.0001 3187 | 3/38
70 h-m-p 0.0000 0.0001 851.4531 ++ 11531.567780 m 0.0001 3228 | 4/38
71 h-m-p 0.0000 0.0002 510.0753 +CCC 11526.574826 2 0.0002 3274 | 4/38
72 h-m-p 0.0001 0.0004 311.0210 +YC 11523.643131 1 0.0002 3317 | 4/38
73 h-m-p 0.0002 0.0011 254.7622 YCCCC 11516.135047 4 0.0006 3365 | 3/38
74 h-m-p 0.0001 0.0006 919.6656 YCCC 11508.509106 3 0.0003 3411 | 3/38
75 h-m-p 0.0001 0.0003 198.6086 ++ 11505.756972 m 0.0003 3452 | 3/38
76 h-m-p 0.0000 0.0000 474.2571
h-m-p: 3.10408031e-20 1.55204015e-19 4.74257146e+02 11505.756972
.. | 3/38
77 h-m-p 0.0000 0.0000 269.7824 +YCYC 11504.870282 3 0.0000 3536 | 3/38
78 h-m-p 0.0000 0.0005 265.9490 CYC 11504.532942 2 0.0000 3580 | 3/38
79 h-m-p 0.0000 0.0005 161.8205 +YCC 11503.842833 2 0.0001 3625 | 3/38
80 h-m-p 0.0001 0.0003 186.3579 ++ 11501.357630 m 0.0003 3666 | 3/38
81 h-m-p -0.0000 -0.0000 542.0707
h-m-p: -2.97223293e-21 -1.48611647e-20 5.42070691e+02 11501.357630
.. | 3/38
82 h-m-p 0.0000 0.0001 214.0692 +YYYYCCC 11500.378990 6 0.0000 3754 | 3/38
83 h-m-p 0.0000 0.0002 520.5774 YCCC 11500.046763 3 0.0000 3800 | 3/38
84 h-m-p 0.0000 0.0001 113.2294 +YCC 11499.609069 2 0.0001 3845 | 3/38
85 h-m-p 0.0000 0.0002 109.5666 YC 11499.269273 1 0.0001 3887 | 3/38
86 h-m-p 0.0000 0.0000 237.8826 ++ 11498.851152 m 0.0000 3928 | 4/38
87 h-m-p 0.0000 0.0000 1097.9144 ++ 11497.502470 m 0.0000 3969 | 4/38
88 h-m-p 0.0002 0.0012 256.0631 CCC 11496.450397 2 0.0002 4014 | 4/38
89 h-m-p 0.0000 0.0004 1135.2430 YCCC 11493.989193 3 0.0001 4060 | 4/38
90 h-m-p 0.0000 0.0002 905.5875 YCCC 11492.448635 3 0.0001 4106 | 4/38
91 h-m-p 0.0001 0.0009 651.7480 +YC 11488.534842 1 0.0003 4149 | 4/38
92 h-m-p 0.0001 0.0006 512.8643 +YCCC 11484.293240 3 0.0004 4196 | 4/38
93 h-m-p 0.0004 0.0018 237.3943 YCYCC 11479.788579 4 0.0010 4243 | 4/38
94 h-m-p 0.0002 0.0008 1028.1790 YCC 11475.385533 2 0.0003 4287 | 4/38
95 h-m-p 0.0013 0.0066 154.3196 ++ 11461.217001 m 0.0066 4328 | 4/38
96 h-m-p 0.0009 0.0043 38.6739 YCCC 11460.307025 3 0.0021 4374 | 4/38
97 h-m-p 0.0001 0.0006 80.9315 +YC 11459.931139 1 0.0005 4417 | 4/38
98 h-m-p 0.0026 0.1114 16.5400 +CCC 11458.663447 2 0.0131 4463 | 4/38
99 h-m-p 0.0103 0.1033 21.0778 YC 11456.414276 1 0.0226 4505 | 4/38
100 h-m-p 0.0149 0.0746 17.4080 CYC 11455.491575 2 0.0133 4549 | 4/38
101 h-m-p 0.0240 0.2933 9.6165 CCC 11454.573973 2 0.0286 4594 | 4/38
102 h-m-p 0.0117 0.0584 6.6741 CCC 11454.137476 2 0.0188 4639 | 4/38
103 h-m-p 0.0122 0.2388 10.2398 +CC 11452.516800 1 0.0421 4683 | 4/38
104 h-m-p 0.0109 0.0543 5.2982 YCCC 11451.907811 3 0.0235 4729 | 4/38
105 h-m-p 0.0106 0.1106 11.7511 +YC 11450.191410 1 0.0273 4772 | 4/38
106 h-m-p 0.0345 0.2509 9.2926 YCCC 11447.193550 3 0.0554 4818 | 4/38
107 h-m-p 0.0116 0.0580 15.0474 CCC 11446.501116 2 0.0096 4863 | 4/38
108 h-m-p 0.0221 0.3038 6.5365 YC 11445.614828 1 0.0442 4905 | 4/38
109 h-m-p 0.0226 0.1149 12.8097 YC 11445.131561 1 0.0142 4947 | 4/38
110 h-m-p 0.0426 0.3150 4.2703 YC 11444.917283 1 0.0247 4989 | 4/38
111 h-m-p 0.0361 0.4221 2.9256 +CC 11444.161252 1 0.1307 5033 | 4/38
112 h-m-p 0.0230 0.1148 6.8679 +YC 11443.183272 1 0.0711 5076 | 4/38
113 h-m-p 0.0246 0.1232 2.0381 ++ 11442.612079 m 0.1232 5117 | 5/38
114 h-m-p 0.0850 1.3319 2.9526 YC 11442.393623 1 0.0569 5159 | 5/38
115 h-m-p 0.0713 1.5976 2.3568 YC 11442.045814 1 0.1497 5201 | 5/38
116 h-m-p 0.3869 5.0264 0.9121 YC 11441.893527 1 0.2092 5243 | 5/38
117 h-m-p 0.2232 7.2358 0.8547 YCC 11441.579519 2 0.4234 5320 | 5/38
118 h-m-p 0.4406 3.6840 0.8212 CC 11441.550035 1 0.0932 5396 | 4/38
119 h-m-p 0.0678 3.4937 1.1287 ---Y 11441.550017 0 0.0001 5473 | 4/38
120 h-m-p 0.0003 0.1327 0.6110 +++++ 11441.518370 m 0.1327 5517 | 5/38
121 h-m-p 0.3727 8.0000 0.2176 YC 11441.481038 1 0.6887 5593 | 5/38
122 h-m-p 1.6000 8.0000 0.0357 YC 11441.476298 1 1.0576 5668 | 5/38
123 h-m-p 1.6000 8.0000 0.0031 Y 11441.475866 0 0.7774 5742 | 5/38
124 h-m-p 0.5639 8.0000 0.0043 Y 11441.475588 0 1.1764 5816 | 5/38
125 h-m-p 1.6000 8.0000 0.0015 C 11441.475546 0 1.4424 5890 | 5/38
126 h-m-p 1.6000 8.0000 0.0007 Y 11441.475544 0 1.0734 5964 | 5/38
127 h-m-p 1.6000 8.0000 0.0001 Y 11441.475544 0 1.1578 6038 | 5/38
128 h-m-p 1.6000 8.0000 0.0000 Y 11441.475544 0 0.7742 6112 | 5/38
129 h-m-p 0.9607 8.0000 0.0000 Y 11441.475544 0 0.2402 6186 | 5/38
130 h-m-p 0.2751 8.0000 0.0000 C 11441.475544 0 0.2751 6260 | 5/38
131 h-m-p 0.3662 8.0000 0.0000 -------Y 11441.475544 0 0.0000 6341
Out..
lnL = -11441.475544
6342 lfun, 19026 eigenQcodon, 443940 P(t)
end of tree file.
Time used: 5:20
Model 2: PositiveSelection
TREE # 1
(1, 16, ((((((((10, 9), 8), 7), (3, 5)), ((11, 6), ((12, 13), 14))), (15, (18, 19))), (2, 4)), 17)); MP score: 2127
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
22
0.042032 0.026858 0.100249 0.027534 0.064705 0.011386 0.022805 0.058043 0.010367 0.078140 0.080110 0.035518 0.037297 0.108097 0.076160 0.103506 0.102191 0.070881 0.085474 0.037218 0.102590 0.014187 0.083167 0.087977 0.025457 0.089435 0.077265 0.063127 0.037844 0.080839 0.016710 0.096062 0.030591 0.080088 0.023481 1.420165 1.060941 0.554894 0.155235 1.461914
ntime & nrate & np: 35 3 40
Bounds (np=40):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 7.634725
np = 40
lnL0 = -15910.805840
Iterating by ming2
Initial: fx= 15910.805840
x= 0.04203 0.02686 0.10025 0.02753 0.06470 0.01139 0.02281 0.05804 0.01037 0.07814 0.08011 0.03552 0.03730 0.10810 0.07616 0.10351 0.10219 0.07088 0.08547 0.03722 0.10259 0.01419 0.08317 0.08798 0.02546 0.08943 0.07727 0.06313 0.03784 0.08084 0.01671 0.09606 0.03059 0.08009 0.02348 1.42017 1.06094 0.55489 0.15524 1.46191
1 h-m-p 0.0000 0.0001 14847.6179 ++ 13023.867157 m 0.0001 45 | 1/40
2 h-m-p 0.0000 0.0000 1705.0357 ++ 12994.775200 m 0.0000 88 | 2/40
3 h-m-p 0.0000 0.0000 2354.5128 ++ 12909.225259 m 0.0000 131 | 2/40
4 h-m-p 0.0000 0.0000 25476.3995 ++ 12882.836418 m 0.0000 174 | 1/40
5 h-m-p -0.0000 -0.0000 6414.0101
h-m-p: -3.34781959e-22 -1.67390979e-21 6.41401009e+03 12882.836418
.. | 1/40
6 h-m-p 0.0000 0.0000 218464.4868 -CCYYCYC 12877.531714 6 0.0000 267 | 1/40
7 h-m-p 0.0000 0.0000 4717.5472 ++ 12869.970120 m 0.0000 310 | 2/40
8 h-m-p 0.0000 0.0000 2074.3596 ++ 12856.615962 m 0.0000 353 | 3/40
9 h-m-p 0.0000 0.0002 722.8297 ++CCCCC 12810.033122 4 0.0002 406 | 3/40
10 h-m-p 0.0000 0.0000 1382.9540 +YCYCCC 12793.271383 5 0.0000 458 | 3/40
11 h-m-p 0.0000 0.0000 4285.5275 ++ 12785.041573 m 0.0000 501 | 4/40
12 h-m-p 0.0000 0.0002 2647.5361 ++CYCYCCC 12711.566258 6 0.0002 556 | 3/40
13 h-m-p 0.0000 0.0000 15392.7498 +YCC 12697.051862 2 0.0000 603 | 3/40
14 h-m-p 0.0000 0.0001 784.7165 ++ 12657.911850 m 0.0001 646 | 4/40
15 h-m-p 0.0000 0.0001 728.3061 ++ 12633.961116 m 0.0001 689 | 5/40
16 h-m-p 0.0002 0.0009 483.5082 +YYCCC 12599.114483 4 0.0005 739 | 5/40
17 h-m-p 0.0001 0.0003 354.0478 +YCYCCC 12580.004535 5 0.0003 791 | 5/40
18 h-m-p 0.0001 0.0004 309.9873 ++ 12558.662253 m 0.0004 834 | 4/40
19 h-m-p 0.0000 0.0000 385.9392
h-m-p: 1.89312683e-21 9.46563417e-21 3.85939242e+02 12558.662253
.. | 4/40
20 h-m-p 0.0000 0.0000 5053.1137 YYCYC 12539.190224 4 0.0000 922 | 4/40
21 h-m-p 0.0000 0.0000 1227.9820 ++ 12511.159108 m 0.0000 965 | 3/40
22 h-m-p 0.0000 0.0000 18558.7624 ++ 12457.544956 m 0.0000 1008 | 4/40
23 h-m-p 0.0000 0.0000 1697.2114 ++ 12457.344255 m 0.0000 1051 | 4/40
24 h-m-p 0.0000 0.0000 37931.0789
h-m-p: 5.35001422e-26 2.67500711e-25 3.79310789e+04 12457.344255
.. | 4/40
25 h-m-p 0.0000 0.0002 37089.1383 --YCYYCYCCC 12453.834987 8 0.0000 1148 | 4/40
26 h-m-p 0.0000 0.0000 1011.8394 ++ 12453.329998 m 0.0000 1191 | 5/40
27 h-m-p 0.0000 0.0002 1670.2626 +++ 12289.528538 m 0.0002 1235 | 6/40
28 h-m-p 0.0001 0.0004 1020.1064 ++ 12171.347781 m 0.0004 1278 | 6/40
29 h-m-p 0.0000 0.0002 2047.1697 +YYCCYCCC 12073.606287 7 0.0002 1334 | 5/40
30 h-m-p 0.0000 0.0000 30283.8596 +YYCYC 12068.491739 4 0.0000 1383 | 5/40
31 h-m-p 0.0000 0.0002 270.3411 +YYYYC 12063.014197 4 0.0001 1431 | 5/40
32 h-m-p 0.0000 0.0003 2968.8749 ++YCCC 12017.189772 3 0.0001 1481 | 5/40
33 h-m-p 0.0001 0.0003 1727.4974 YCCCC 11993.599586 4 0.0001 1531 | 5/40
34 h-m-p 0.0001 0.0006 471.4117 +CYCCC 11966.747623 4 0.0005 1582 | 5/40
35 h-m-p 0.0000 0.0001 294.3558 +YYCYYCC 11961.585768 6 0.0001 1635 | 5/40
36 h-m-p 0.0000 0.0003 1663.9372 ++ 11910.259707 m 0.0003 1678 | 6/40
37 h-m-p 0.0002 0.0008 1522.0334 +YCCC 11872.122945 3 0.0004 1727 | 6/40
38 h-m-p 0.0003 0.0013 569.1806 +YYYCCC 11819.212959 5 0.0010 1778 | 5/40
39 h-m-p 0.0000 0.0001 2993.7882 ++ 11808.351150 m 0.0001 1821 | 5/40
40 h-m-p 0.0001 0.0006 132.1713 +YCC 11803.765386 2 0.0005 1868 | 4/40
41 h-m-p 0.0000 0.0000 850.7022 ++ 11802.964086 m 0.0000 1911 | 4/40
42 h-m-p 0.0000 0.0000 96.2457
h-m-p: 1.83912032e-21 9.19560162e-21 9.62456971e+01 11802.964086
.. | 4/40
43 h-m-p 0.0000 0.0003 1436.0171 +CYCCC 11790.863087 4 0.0000 2002 | 4/40
44 h-m-p 0.0000 0.0001 846.0429 ++ 11753.900394 m 0.0001 2045 | 4/40
45 h-m-p 0.0000 0.0000 29674.3229 +YYYCYCCC 11736.006169 7 0.0000 2099 | 4/40
46 h-m-p 0.0000 0.0000 1878.7296 ++ 11709.318885 m 0.0000 2142 | 3/40
47 h-m-p 0.0000 0.0000 213818.4598 ++ 11668.513372 m 0.0000 2185 | 4/40
48 h-m-p 0.0000 0.0000 755.6958 ++ 11668.263034 m 0.0000 2228 | 4/40
49 h-m-p -0.0000 -0.0000 2407.6416
h-m-p: -1.31852533e-24 -6.59262664e-24 2.40764158e+03 11668.263034
.. | 4/40
50 h-m-p 0.0000 0.0001 11806.5170 -CYYCYCCC 11665.674293 7 0.0000 2323 | 4/40
51 h-m-p 0.0000 0.0000 578.7179 ++ 11665.612026 m 0.0000 2366 | 5/40
52 h-m-p 0.0000 0.0000 1724.1317 +CYCCC 11659.592160 4 0.0000 2417 | 5/40
53 h-m-p 0.0000 0.0001 819.1995 +YYYCCC 11650.944667 5 0.0001 2468 | 5/40
54 h-m-p 0.0001 0.0003 572.0310 +YYYYCC 11634.163808 5 0.0002 2518 | 5/40
55 h-m-p 0.0000 0.0000 8258.7693 +CCC 11604.742758 2 0.0000 2566 | 5/40
56 h-m-p 0.0000 0.0001 1186.2477 ++ 11587.859050 m 0.0001 2609 | 6/40
57 h-m-p 0.0000 0.0002 769.1294 YCYCCC 11578.987969 5 0.0001 2660 | 6/40
58 h-m-p 0.0001 0.0004 396.4720 YCYCCC 11569.159327 5 0.0002 2711 | 5/40
59 h-m-p 0.0000 0.0001 520.7672 YCYCCC 11565.903145 5 0.0001 2762 | 4/40
60 h-m-p 0.0000 0.0002 527.5302 +YYC 11563.213159 2 0.0001 2808 | 4/40
61 h-m-p 0.0002 0.0014 263.8939 ++ 11549.588447 m 0.0014 2851 | 4/40
62 h-m-p 0.0000 0.0000 2230.4202
h-m-p: 1.04282900e-21 5.21414502e-21 2.23042017e+03 11549.588447
.. | 4/40
63 h-m-p 0.0000 0.0000 1579.0541 YCYCC 11539.394607 4 0.0000 2940 | 4/40
64 h-m-p 0.0000 0.0000 435.5552 ++ 11535.518567 m 0.0000 2983 | 5/40
65 h-m-p 0.0000 0.0001 533.9794 YCCC 11532.227479 3 0.0001 3031 | 5/40
66 h-m-p 0.0000 0.0002 359.1283 YCCCC 11529.381355 4 0.0001 3081 | 4/40
67 h-m-p 0.0000 0.0002 314.8572 YCCC 11526.961120 3 0.0001 3129 | 4/40
68 h-m-p 0.0000 0.0001 430.1600 ++ 11523.720092 m 0.0001 3172 | 4/40
69 h-m-p 0.0000 0.0000 249.5454
h-m-p: 2.42595907e-21 1.21297954e-20 2.49545403e+02 11523.720092
.. | 4/40
70 h-m-p 0.0000 0.0000 262.8492 +YYCYC 11522.731539 4 0.0000 3261 | 4/40
71 h-m-p 0.0000 0.0001 303.0785 YC 11522.026710 1 0.0000 3305 | 4/40
72 h-m-p 0.0001 0.0008 157.7705 YCCC 11521.343367 3 0.0001 3353 | 4/40
73 h-m-p 0.0000 0.0001 188.0258 ++ 11520.125226 m 0.0001 3396 | 5/40
74 h-m-p 0.0000 0.0002 420.9119 ++ 11517.089096 m 0.0002 3439 | 5/40
75 h-m-p 0.0001 0.0006 373.1652 CCCC 11515.198744 3 0.0002 3488 | 5/40
76 h-m-p 0.0001 0.0009 1042.4792 +CYC 11508.198794 2 0.0002 3535 | 5/40
77 h-m-p 0.0001 0.0004 1300.8320 +YCCC 11498.700193 3 0.0002 3584 | 5/40
78 h-m-p 0.0000 0.0002 1409.2515 +CYC 11490.752291 2 0.0002 3631 | 5/40
79 h-m-p 0.0001 0.0004 552.3292 +YCCC 11486.222866 3 0.0003 3680 | 5/40
80 h-m-p 0.0001 0.0005 353.5159 YCYCCC 11483.875877 5 0.0002 3731 | 4/40
81 h-m-p 0.0001 0.0004 503.9977 +YCCC 11480.498637 3 0.0002 3780 | 4/40
82 h-m-p 0.0002 0.0008 405.2702 +YYC 11475.200153 2 0.0006 3826 | 4/40
83 h-m-p 0.0001 0.0007 196.3679 +YC 11473.517255 1 0.0006 3871 | 4/40
84 h-m-p 0.0011 0.0065 106.0731 CCCC 11470.388623 3 0.0017 3920 | 4/40
85 h-m-p 0.0022 0.0109 38.8964 CCC 11468.860113 2 0.0035 3967 | 4/40
86 h-m-p 0.0057 0.0394 23.6238 YC 11467.164801 1 0.0098 4011 | 4/40
87 h-m-p 0.0026 0.0128 51.7336 +YCC 11464.796401 2 0.0070 4058 | 4/40
88 h-m-p 0.0053 0.0267 65.2653 CYC 11462.320513 2 0.0066 4104 | 4/40
89 h-m-p 0.0186 0.0932 19.5018 CCC 11460.457911 2 0.0200 4151 | 4/40
90 h-m-p 0.0189 0.1133 20.5675 YCC 11459.700925 2 0.0090 4197 | 4/40
91 h-m-p 0.0254 0.2069 7.2604 CCC 11458.704890 2 0.0366 4244 | 4/40
92 h-m-p 0.0136 0.0678 13.1923 CCC 11457.935595 2 0.0149 4291 | 4/40
93 h-m-p 0.0106 0.0529 9.0158 YC 11457.133789 1 0.0194 4335 | 4/40
94 h-m-p 0.0058 0.0288 6.0183 ++ 11455.409992 m 0.0288 4378 | 5/40
95 h-m-p 0.0072 0.0472 24.1119 +YCCC 11451.839511 3 0.0196 4427 | 5/40
96 h-m-p 0.0053 0.0264 14.9939 ++ 11448.941376 m 0.0264 4470 | 5/40
97 h-m-p 0.0000 0.0000 7.7225
h-m-p: 6.40845226e-19 3.20422613e-18 7.72246073e+00 11448.941376
.. | 5/40
98 h-m-p 0.0000 0.0006 101.1956 CYC 11448.876746 2 0.0000 4556 | 5/40
99 h-m-p 0.0000 0.0002 59.1131 CCC 11448.830560 2 0.0000 4603 | 5/40
100 h-m-p 0.0000 0.0004 99.3081 CC 11448.774268 1 0.0000 4648 | 5/40
101 h-m-p 0.0001 0.0011 44.8280 CC 11448.719034 1 0.0001 4693 | 5/40
102 h-m-p 0.0001 0.0032 46.4212 C 11448.679415 0 0.0001 4736 | 5/40
103 h-m-p 0.0001 0.0015 66.5114 YC 11448.596533 1 0.0002 4780 | 5/40
104 h-m-p 0.0001 0.0013 99.4720 +YC 11448.391733 1 0.0003 4825 | 5/40
105 h-m-p 0.0001 0.0007 475.3897 +YC 11447.930067 1 0.0001 4870 | 5/40
106 h-m-p 0.0001 0.0007 87.4233 ++ 11447.535985 m 0.0007 4913 | 6/40
107 h-m-p 0.0011 0.0057 32.4367 YCC 11447.420192 2 0.0007 4959 | 6/40
108 h-m-p 0.0002 0.0092 119.4466 +CYC 11446.988173 2 0.0007 5006 | 6/40
109 h-m-p 0.0014 0.0068 40.8960 YYC 11446.780383 2 0.0010 5051 | 5/40
110 h-m-p 0.0001 0.0009 422.6501 CYC 11446.552707 2 0.0001 5097 | 5/40
111 h-m-p 0.0003 0.0019 151.6468 +YC 11445.480328 1 0.0016 5142 | 5/40
112 h-m-p 0.0073 0.0364 33.0385 CCC 11444.586500 2 0.0071 5189 | 5/40
113 h-m-p 0.0029 0.0146 23.2009 +YC 11443.825773 1 0.0098 5234 | 5/40
114 h-m-p 0.0011 0.0055 25.2451 ++ 11443.245026 m 0.0055 5277 | 6/40
115 h-m-p 0.0153 0.1120 9.0221 YC 11443.037354 1 0.0109 5321 | 5/40
116 h-m-p 0.0056 0.0865 17.7262 --C 11443.035248 0 0.0001 5366 | 5/40
117 h-m-p 0.0002 0.0244 7.2648 +++YC 11442.845648 1 0.0186 5413 | 5/40
118 h-m-p 0.0158 0.4258 8.5555 CC 11442.634762 1 0.0198 5458 | 5/40
119 h-m-p 0.0038 0.0190 11.1130 ++ 11442.384230 m 0.0190 5501 | 5/40
120 h-m-p -0.0000 -0.0000 3.9086
h-m-p: -9.15684233e-18 -4.57842117e-17 3.90855278e+00 11442.384230
.. | 5/40
121 h-m-p 0.0000 0.0003 183.2568 CCC 11442.227109 2 0.0000 5588 | 5/40
122 h-m-p 0.0003 0.0480 6.7140 C 11442.220965 0 0.0003 5631 | 5/40
123 h-m-p 0.0000 0.0003 69.2217 YC 11442.216426 1 0.0000 5675 | 5/40
124 h-m-p 0.0000 0.0005 37.2587 +CY 11442.201589 1 0.0001 5721 | 5/40
125 h-m-p 0.0000 0.0038 100.2392 +YC 11442.164639 1 0.0001 5766 | 5/40
126 h-m-p 0.0002 0.0023 66.3325 CC 11442.151993 1 0.0001 5811 | 5/40
127 h-m-p 0.0001 0.0004 39.0759 YC 11442.133247 1 0.0002 5855 | 5/40
128 h-m-p 0.0002 0.0009 46.7600 YC 11442.123354 1 0.0001 5899 | 5/40
129 h-m-p 0.0001 0.0003 16.5788 +CC 11442.116601 1 0.0002 5945 | 5/40
130 h-m-p 0.0000 0.0002 6.2195 ++ 11442.113387 m 0.0002 5988 | 6/40
131 h-m-p 0.0001 0.0692 21.0901 +CC 11442.100223 1 0.0005 6034 | 6/40
132 h-m-p 0.0002 0.0140 49.1709 +C 11442.048360 0 0.0008 6078 | 6/40
133 h-m-p 0.0046 0.0860 8.0047 YC 11441.943856 1 0.0114 6122 | 6/40
134 h-m-p 0.0134 0.1482 6.8184 YC 11441.892884 1 0.0077 6166 | 6/40
135 h-m-p 0.0062 0.1288 8.4619 YC 11441.871140 1 0.0030 6210 | 6/40
136 h-m-p 0.0058 0.3323 4.3351 +CC 11441.808685 1 0.0203 6256 | 6/40
137 h-m-p 0.0159 0.9094 5.5412 YC 11441.721205 1 0.0257 6300 | 6/40
138 h-m-p 0.0353 1.0534 4.0277 YC 11441.596637 1 0.0581 6344 | 6/40
139 h-m-p 0.0253 0.5104 9.2356 YC 11441.531971 1 0.0140 6388 | 6/40
140 h-m-p 0.0400 0.5280 3.2256 CC 11441.510669 1 0.0152 6433 | 6/40
141 h-m-p 0.0265 0.8669 1.8565 YC 11441.500860 1 0.0155 6477 | 6/40
142 h-m-p 0.0244 2.5539 1.1805 C 11441.492853 0 0.0263 6520 | 6/40
143 h-m-p 0.0322 2.9073 0.9647 YC 11441.489481 1 0.0174 6564 | 6/40
144 h-m-p 0.0151 3.5323 1.1096 +YC 11441.480988 1 0.0448 6643 | 6/40
145 h-m-p 0.1656 8.0000 0.3002 Y 11441.479917 0 0.0328 6686 | 6/40
146 h-m-p 0.0152 3.9046 0.6482 YC 11441.478367 1 0.0247 6764 | 6/40
147 h-m-p 0.0845 8.0000 0.1891 YC 11441.477765 1 0.0438 6842 | 6/40
148 h-m-p 0.1414 8.0000 0.0586 YC 11441.476664 1 0.2802 6920 | 6/40
149 h-m-p 0.1700 8.0000 0.0966 Y 11441.475907 0 0.1301 6997 | 6/40
150 h-m-p 0.1399 8.0000 0.0898 C 11441.475754 0 0.0430 7074 | 6/40
151 h-m-p 0.0934 8.0000 0.0413 Y 11441.475625 0 0.1511 7151 | 6/40
152 h-m-p 0.1966 8.0000 0.0318 C 11441.475557 0 0.1738 7228 | 6/40
153 h-m-p 1.2709 8.0000 0.0043 Y 11441.475548 0 0.5356 7305 | 6/40
154 h-m-p 0.4881 8.0000 0.0048 C 11441.475546 0 0.1435 7382 | 6/40
155 h-m-p 0.2423 8.0000 0.0028 C 11441.475544 0 0.3122 7459 | 6/40
156 h-m-p 1.6000 8.0000 0.0005 Y 11441.475544 0 0.2046 7536 | 6/40
157 h-m-p 0.7823 8.0000 0.0001 C 11441.475544 0 0.7262 7613 | 6/40
158 h-m-p 1.6000 8.0000 0.0000 -------C 11441.475544 0 0.0000 7697
Out..
lnL = -11441.475544
7698 lfun, 30792 eigenQcodon, 808290 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -11552.789786 S = -11138.467591 -429.425272
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 335 patterns 15:02
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did 335 / 335 patterns 15:04end of tree file.
Time used: 15:04
Model 7: beta
TREE # 1
(1, 16, ((((((((10, 9), 8), 7), (3, 5)), ((11, 6), ((12, 13), 14))), (15, (18, 19))), (2, 4)), 17)); MP score: 2127
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
22
0.062824 0.035299 0.086021 0.016185 0.104717 0.027251 0.092754 0.031813 0.016559 0.043122 0.101018 0.032249 0.045494 0.019684 0.059324 0.071364 0.090316 0.055737 0.041928 0.037846 0.033719 0.033249 0.023996 0.012421 0.102173 0.079017 0.039876 0.036692 0.083133 0.052795 0.041660 0.017044 0.104258 0.022830 0.050226 1.420166 0.720356 1.443231
ntime & nrate & np: 35 1 38
Bounds (np=38):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 11.319630
np = 38
lnL0 = -16078.153977
Iterating by ming2
Initial: fx= 16078.153977
x= 0.06282 0.03530 0.08602 0.01619 0.10472 0.02725 0.09275 0.03181 0.01656 0.04312 0.10102 0.03225 0.04549 0.01968 0.05932 0.07136 0.09032 0.05574 0.04193 0.03785 0.03372 0.03325 0.02400 0.01242 0.10217 0.07902 0.03988 0.03669 0.08313 0.05280 0.04166 0.01704 0.10426 0.02283 0.05023 1.42017 0.72036 1.44323
1 h-m-p 0.0000 0.0000 15483.1459 ++ 13529.805051 m 0.0000 43 | 1/38
2 h-m-p 0.0000 0.0000 2607.6655 ++ 13365.326506 m 0.0000 84 | 2/38
3 h-m-p 0.0000 0.0001 1292.6177 ++ 13206.500077 m 0.0001 125 | 3/38
4 h-m-p 0.0000 0.0000 1688.7535 +CYYCYCCC 13197.502998 7 0.0000 178 | 2/38
5 h-m-p 0.0000 0.0000 94669.1219 ++ 13196.493973 m 0.0000 219 | 2/38
6 h-m-p -0.0000 -0.0000 5104.9790
h-m-p: -8.28656903e-25 -4.14328451e-24 5.10497901e+03 13196.493973
.. | 2/38
7 h-m-p 0.0000 0.0001 8121.9125 ++ 13029.034804 m 0.0001 298 | 2/38
8 h-m-p 0.0000 0.0000 132406.0809 ++ 13002.619123 m 0.0000 339 | 2/38
9 h-m-p 0.0000 0.0002 6499.6888 +YCCCC 12871.129644 4 0.0001 388 | 2/38
10 h-m-p 0.0000 0.0001 1353.6887 ++ 12713.846788 m 0.0001 429 | 2/38
11 h-m-p 0.0000 0.0000 41910.0432 ++ 12681.833084 m 0.0000 470 | 3/38
12 h-m-p 0.0000 0.0001 2583.5209 ++ 12525.058309 m 0.0001 511 | 3/38
13 h-m-p 0.0000 0.0000 2882.6553 +CYYYC 12477.851247 4 0.0000 558 | 3/38
14 h-m-p 0.0001 0.0007 278.9820 ++ 12441.059971 m 0.0007 599 | 4/38
15 h-m-p 0.0001 0.0006 299.7034 YC 12434.377817 1 0.0003 641 | 4/38
16 h-m-p 0.0004 0.0023 208.8068 +CYCCC 12370.503604 4 0.0017 691 | 4/38
17 h-m-p 0.0000 0.0001 2245.5522 ++ 12335.235238 m 0.0001 732 | 5/38
18 h-m-p 0.0001 0.0004 897.3736 +YCYYCYYCCC 12237.350977 9 0.0004 787 | 4/38
19 h-m-p 0.0000 0.0000 8132.0924 +YCYC 12235.420835 3 0.0000 833 | 4/38
20 h-m-p 0.0001 0.0019 104.4436 +YCYCCC 12228.115135 5 0.0009 883 | 3/38
21 h-m-p 0.0001 0.0003 583.3906 +YCCC 12218.365349 3 0.0003 930 | 3/38
22 h-m-p 0.0000 0.0002 525.6301 ++ 12209.820056 m 0.0002 971 | 3/38
23 h-m-p 0.0000 0.0005 3518.0171 +++ 12091.429285 m 0.0005 1013 | 3/38
24 h-m-p -0.0000 -0.0000 1354.9880
h-m-p: -1.06400516e-19 -5.32002580e-19 1.35498802e+03 12091.429285
.. | 3/38
25 h-m-p 0.0000 0.0002 2733.0843 +CCYC 12068.413351 3 0.0000 1098 | 3/38
26 h-m-p 0.0000 0.0001 874.8980 ++ 11988.884811 m 0.0001 1139 | 3/38
27 h-m-p 0.0000 0.0000 3727.3138 ++ 11974.828085 m 0.0000 1180 | 3/38
28 h-m-p 0.0000 0.0001 4851.2803 ++ 11805.273039 m 0.0001 1221 | 2/38
29 h-m-p 0.0000 0.0000 2309.4283
h-m-p: 7.45502409e-22 3.72751205e-21 2.30942826e+03 11805.273039
.. | 2/38
30 h-m-p 0.0000 0.0001 211642.3826 ---YCYYCYYCC 11799.906717 8 0.0000 1315 | 2/38
31 h-m-p 0.0000 0.0000 1356.4876 ++ 11797.955115 m 0.0000 1356 | 3/38
32 h-m-p 0.0000 0.0001 848.7356 ++ 11759.059838 m 0.0001 1397 | 3/38
33 h-m-p 0.0000 0.0000 4148.7935 +YYYCYCYC 11732.335774 7 0.0000 1448 | 3/38
34 h-m-p 0.0000 0.0000 2311.6815 +YYYYYYCCCC 11710.066027 9 0.0000 1502 | 3/38
35 h-m-p 0.0000 0.0001 528.2225 ++ 11693.512336 m 0.0001 1543 | 3/38
36 h-m-p 0.0000 0.0001 1911.0534 +YYCCC 11663.687849 4 0.0001 1591 | 3/38
37 h-m-p 0.0000 0.0000 517.3485 ++ 11659.259187 m 0.0000 1632 | 3/38
38 h-m-p 0.0000 0.0008 1226.4272 +++ 11559.996976 m 0.0008 1674 | 2/38
39 h-m-p -0.0000 -0.0000 105218.2628
h-m-p: -1.53936051e-21 -7.69680253e-21 1.05218263e+05 11559.996976
.. | 2/38
40 h-m-p 0.0000 0.0000 223116.1398 --CYCCYC 11554.420862 5 0.0000 1764 | 2/38
41 h-m-p 0.0000 0.0000 2611.3847 ++ 11551.611603 m 0.0000 1805 | 3/38
42 h-m-p 0.0000 0.0000 1009.4359 ++ 11545.244093 m 0.0000 1846 | 4/38
43 h-m-p 0.0000 0.0002 351.7499 +CCCC 11532.395099 3 0.0002 1894 | 4/38
44 h-m-p 0.0000 0.0000 2252.4459 +CCC 11528.753134 2 0.0000 1940 | 4/38
45 h-m-p 0.0000 0.0001 376.9078 YC 11527.453326 1 0.0000 1982 | 4/38
46 h-m-p 0.0000 0.0002 811.1342 +YYC 11523.666230 2 0.0001 2026 | 4/38
47 h-m-p 0.0002 0.0008 243.5992 CCCC 11520.579207 3 0.0002 2073 | 4/38
48 h-m-p 0.0003 0.0072 164.2731 ++CYCCC 11481.546823 4 0.0053 2123 | 3/38
49 h-m-p 0.0001 0.0003 4637.0553 CCCC 11472.592892 3 0.0001 2170 | 3/38
50 h-m-p 0.0000 0.0001 239.2530 ++ 11470.453009 m 0.0001 2211 | 4/38
51 h-m-p 0.0002 0.0014 200.3297 +YCYCCC 11462.295084 5 0.0012 2262 | 4/38
52 h-m-p 0.0002 0.0028 1046.3238 CYCC 11457.186676 3 0.0003 2308 | 4/38
53 h-m-p 0.0078 0.0388 29.4822 CCC 11453.709927 2 0.0097 2353 | 4/38
54 h-m-p 0.0082 0.0410 27.4737 +YC 11447.126309 1 0.0229 2396 | 4/38
55 h-m-p 0.0028 0.0138 84.9977 +YCCC 11438.348833 3 0.0091 2443 | 4/38
56 h-m-p 0.0053 0.0264 66.7879 YC 11429.046401 1 0.0131 2485 | 4/38
57 h-m-p 0.0134 0.0672 27.6267 CCCC 11422.764311 3 0.0228 2532 | 4/38
58 h-m-p 0.0122 0.0611 40.2391 CCCC 11416.826679 3 0.0150 2579 | 4/38
59 h-m-p 0.0075 0.0373 42.5933 CCC 11412.119129 2 0.0116 2624 | 4/38
60 h-m-p 0.0143 0.0714 33.2567 YYC 11408.763214 2 0.0122 2667 | 4/38
61 h-m-p 0.0121 0.0664 33.4949 CC 11406.260325 1 0.0110 2710 | 4/38
62 h-m-p 0.0205 0.1213 17.9967 YC 11404.982669 1 0.0125 2752 | 4/38
63 h-m-p 0.0185 0.1054 12.0987 YCC 11403.915132 2 0.0154 2796 | 4/38
64 h-m-p 0.0162 0.1759 11.5569 +CC 11399.732509 1 0.0598 2840 | 4/38
65 h-m-p 0.0061 0.0306 25.6022 +YCCC 11396.469107 3 0.0190 2887 | 4/38
66 h-m-p 0.0231 0.1329 20.9713 CYC 11392.380439 2 0.0284 2931 | 4/38
67 h-m-p 0.0073 0.0363 27.5282 +YC 11388.499337 1 0.0188 2974 | 4/38
68 h-m-p 0.0093 0.0463 25.4446 +YCC 11384.115288 2 0.0258 3019 | 4/38
69 h-m-p 0.0258 0.1290 14.3337 CCC 11381.826272 2 0.0295 3064 | 4/38
70 h-m-p 0.0294 0.1469 14.3310 YC 11378.676589 1 0.0505 3106 | 4/38
71 h-m-p 0.0480 0.2398 6.0217 CYC 11377.702965 2 0.0466 3150 | 4/38
72 h-m-p 0.0419 0.6243 6.7091 +CCC 11374.548460 2 0.1380 3196 | 4/38
73 h-m-p 0.1759 0.9926 5.2667 YC 11368.005497 1 0.2997 3238 | 4/38
74 h-m-p 0.3017 1.7405 5.2318 CYCC 11360.731703 3 0.3845 3284 | 4/38
75 h-m-p 0.0802 0.4009 7.7273 CC 11357.982484 1 0.1263 3327 | 4/38
76 h-m-p 0.3522 1.7609 1.8492 YCCC 11354.560696 3 0.7382 3373 | 4/38
77 h-m-p 0.1091 0.5457 4.2132 YC 11352.715385 1 0.2162 3415 | 4/38
78 h-m-p 0.1860 0.9299 0.8940 +YC 11351.748756 1 0.8107 3458 | 4/38
79 h-m-p 0.2283 1.1413 0.3344 ++ 11351.400571 m 1.1413 3533 | 5/38
80 h-m-p 0.7721 8.0000 0.4943 +YC 11351.019330 1 2.2664 3610 | 5/38
81 h-m-p 1.6000 8.0000 0.3052 CC 11350.798754 1 1.7133 3686 | 5/38
82 h-m-p 1.6000 8.0000 0.2198 C 11350.723323 0 1.6000 3760 | 5/38
83 h-m-p 1.6000 8.0000 0.0633 CC 11350.687882 1 2.5248 3836 | 5/38
84 h-m-p 1.6000 8.0000 0.0393 CC 11350.677837 1 2.0872 3912 | 5/38
85 h-m-p 1.6000 8.0000 0.0454 C 11350.673257 0 1.8008 3986 | 5/38
86 h-m-p 1.6000 8.0000 0.0201 YC 11350.669372 1 2.7679 4061 | 5/38
87 h-m-p 1.6000 8.0000 0.0140 YC 11350.666630 1 3.0622 4136 | 5/38
88 h-m-p 1.6000 8.0000 0.0119 +YC 11350.663188 1 4.8990 4212 | 5/38
89 h-m-p 1.6000 8.0000 0.0149 C 11350.661471 0 2.1448 4286 | 5/38
90 h-m-p 1.6000 8.0000 0.0044 C 11350.661223 0 2.5559 4360 | 5/38
91 h-m-p 1.6000 8.0000 0.0057 Y 11350.661072 0 2.8361 4434 | 5/38
92 h-m-p 1.6000 8.0000 0.0042 C 11350.661004 0 2.0526 4508 | 5/38
93 h-m-p 1.6000 8.0000 0.0013 C 11350.660997 0 1.6709 4582 | 5/38
94 h-m-p 1.6000 8.0000 0.0004 C 11350.660995 0 1.9896 4656 | 5/38
95 h-m-p 1.6000 8.0000 0.0002 Y 11350.660994 0 3.6777 4730 | 5/38
96 h-m-p 1.6000 8.0000 0.0002 Y 11350.660994 0 3.0970 4804 | 5/38
97 h-m-p 1.6000 8.0000 0.0003 C 11350.660993 0 1.8150 4878 | 5/38
98 h-m-p 1.6000 8.0000 0.0001 C 11350.660993 0 1.5200 4952 | 5/38
99 h-m-p 1.6000 8.0000 0.0000 Y 11350.660993 0 1.2037 5026 | 5/38
100 h-m-p 1.6000 8.0000 0.0000 C 11350.660993 0 1.6000 5100 | 5/38
101 h-m-p 1.1930 8.0000 0.0000 Y 11350.660993 0 0.9472 5174 | 5/38
102 h-m-p 1.4641 8.0000 0.0000 Y 11350.660993 0 0.8399 5248 | 5/38
103 h-m-p 1.6000 8.0000 0.0000 -Y 11350.660993 0 0.1739 5323 | 5/38
104 h-m-p 0.1679 8.0000 0.0000 -------C 11350.660993 0 0.0000 5404
Out..
lnL = -11350.660993
5405 lfun, 59455 eigenQcodon, 1891750 P(t)
end of tree file.
Time used: 37:45
Model 8: beta&w>1
TREE # 1
(1, 16, ((((((((10, 9), 8), 7), (3, 5)), ((11, 6), ((12, 13), 14))), (15, (18, 19))), (2, 4)), 17)); MP score: 2127
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
22
0.064726 0.065953 0.026732 0.100527 0.094598 0.081287 0.012405 0.031867 0.022431 0.012349 0.045041 0.033281 0.086599 0.041779 0.031097 0.070234 0.105467 0.039991 0.063944 0.038445 0.057025 0.107041 0.029420 0.108434 0.072486 0.052280 0.033955 0.069588 0.104783 0.103994 0.053684 0.053416 0.107914 0.016208 0.077995 1.450319 0.900000 1.006994 1.280517 1.300000
ntime & nrate & np: 35 2 40
Bounds (np=40):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 8.653748
np = 40
lnL0 = -16150.282708
Iterating by ming2
Initial: fx= 16150.282708
x= 0.06473 0.06595 0.02673 0.10053 0.09460 0.08129 0.01241 0.03187 0.02243 0.01235 0.04504 0.03328 0.08660 0.04178 0.03110 0.07023 0.10547 0.03999 0.06394 0.03844 0.05703 0.10704 0.02942 0.10843 0.07249 0.05228 0.03396 0.06959 0.10478 0.10399 0.05368 0.05342 0.10791 0.01621 0.07800 1.45032 0.90000 1.00699 1.28052 1.30000
1 h-m-p 0.0000 0.0000 17937.1522 ++ 13358.453335 m 0.0000 45 | 1/40
2 h-m-p 0.0000 0.0001 2473.5829 ++ 12965.596504 m 0.0001 88 | 1/40
3 h-m-p 0.0000 0.0000 77584.5532 ++ 12896.255460 m 0.0000 131 | 1/40
4 h-m-p 0.0000 0.0000 33640.7396 ++ 12816.326869 m 0.0000 174 | 1/40
5 h-m-p 0.0000 0.0000 73197.8408 ++ 12810.790401 m 0.0000 217 | 2/40
6 h-m-p 0.0000 0.0000 1848.5635 ++ 12767.517904 m 0.0000 260 | 2/40
7 h-m-p 0.0000 0.0000 1270.1770 ++ 12739.556340 m 0.0000 303 | 2/40
8 h-m-p 0.0000 0.0000 63868.8533 ++ 12734.773033 m 0.0000 346 | 3/40
9 h-m-p 0.0000 0.0002 1026.5012 ++YYYCYCCC 12682.538874 7 0.0001 401 | 3/40
10 h-m-p 0.0000 0.0000 6451.8082 ++ 12661.900761 m 0.0000 444 | 2/40
11 h-m-p -0.0000 -0.0000 94008.1170
h-m-p: -3.70239978e-24 -1.85119989e-23 9.40081170e+04 12661.900761
.. | 2/40
12 h-m-p 0.0000 0.0000 218964.1284 --YCYCYC 12652.974124 5 0.0000 537 | 2/40
13 h-m-p 0.0000 0.0000 2891.5597 ++ 12646.905863 m 0.0000 580 | 3/40
14 h-m-p 0.0000 0.0000 2494.8933 ++ 12544.369430 m 0.0000 623 | 4/40
15 h-m-p 0.0000 0.0000 4642.5181 ++ 12446.314611 m 0.0000 666 | 4/40
16 h-m-p 0.0000 0.0000 7149.7281 +CYCCCC 12400.387403 5 0.0000 719 | 4/40
17 h-m-p 0.0000 0.0000 1653.5702 ++ 12383.014591 m 0.0000 762 | 4/40
18 h-m-p 0.0000 0.0000 8810.6387 ++ 12353.122264 m 0.0000 805 | 4/40
19 h-m-p 0.0000 0.0002 529.8177 +CYYCC 12333.765907 4 0.0001 855 | 4/40
20 h-m-p 0.0001 0.0005 512.9983 YCCCC 12316.668817 4 0.0002 905 | 4/40
21 h-m-p 0.0001 0.0004 774.8714 YCCC 12303.181074 3 0.0002 953 | 4/40
22 h-m-p 0.0000 0.0002 880.2448 +CYCYC 12279.643144 4 0.0002 1003 | 4/40
23 h-m-p 0.0001 0.0003 1271.1944 YYCC 12275.071079 3 0.0001 1050 | 4/40
24 h-m-p 0.0001 0.0006 282.3653 CCCC 12271.430573 3 0.0002 1099 | 4/40
25 h-m-p 0.0005 0.0023 105.4921 CYC 12269.612228 2 0.0004 1145 | 4/40
26 h-m-p 0.0002 0.0008 200.9679 ++ 12263.366101 m 0.0008 1188 | 4/40
27 h-m-p -0.0000 -0.0000 925.5090
h-m-p: -0.00000000e+00 -0.00000000e+00 9.25509012e+02 12263.366101
.. | 4/40
28 h-m-p 0.0000 0.0001 2008.7174 +YCCC 12223.602508 3 0.0001 1277 | 4/40
29 h-m-p 0.0000 0.0000 1518.7383 ++ 12204.950552 m 0.0000 1320 | 5/40
30 h-m-p 0.0000 0.0000 2350.0749 ++ 12170.854694 m 0.0000 1363 | 4/40
31 h-m-p -0.0000 -0.0000 18649.7260
h-m-p: -1.03789158e-23 -5.18945790e-23 1.86497260e+04 12170.854694
.. | 4/40
32 h-m-p 0.0000 0.0000 222595.4033 ---YCYYCYCCC 12165.783356 8 0.0000 1461 | 4/40
33 h-m-p 0.0000 0.0000 1222.4902 ++ 12165.386892 m 0.0000 1504 | 5/40
34 h-m-p 0.0000 0.0001 1313.7279 ++ 12088.806427 m 0.0001 1547 | 5/40
35 h-m-p 0.0000 0.0000 62470.5988 CYC 12088.402165 2 0.0000 1593 | 5/40
36 h-m-p 0.0000 0.0001 2511.1811 ++ 12013.426362 m 0.0001 1636 | 5/40
37 h-m-p 0.0000 0.0001 1995.3309 ++ 11972.325513 m 0.0001 1679 | 5/40
38 h-m-p 0.0000 0.0002 777.2862 +YYYCYCYC 11936.536388 7 0.0002 1732 | 5/40
39 h-m-p 0.0000 0.0001 1328.7254 ++ 11917.317771 m 0.0001 1775 | 6/40
40 h-m-p 0.0001 0.0004 270.1482 +YYYCCC 11895.841668 5 0.0003 1826 | 6/40
41 h-m-p 0.0000 0.0002 1002.9152 +CYCC 11874.787666 3 0.0001 1875 | 5/40
42 h-m-p 0.0000 0.0000 1931.4798 ++ 11867.672040 m 0.0000 1918 | 6/40
43 h-m-p 0.0001 0.0008 178.3269 ++ 11844.092145 m 0.0008 1961 | 6/40
44 h-m-p 0.0001 0.0004 341.4998 ++ 11821.158561 m 0.0004 2004 | 6/40
45 h-m-p 0.0001 0.0003 558.9605 +CC 11809.539025 1 0.0002 2050 | 6/40
46 h-m-p 0.0013 0.0088 109.6712 YCCC 11796.746072 3 0.0027 2098 | 5/40
47 h-m-p 0.0005 0.0031 602.4888 -YYCCC 11795.698844 4 0.0000 2148 | 5/40
48 h-m-p 0.0001 0.0026 376.1163 +++ 11757.534188 m 0.0026 2192 | 6/40
49 h-m-p 0.0004 0.0018 303.9307 ++ 11729.283734 m 0.0018 2235 | 6/40
50 h-m-p 0.0001 0.0006 1901.5708 -CCC 11729.045376 2 0.0000 2283 | 6/40
51 h-m-p 0.0001 0.0060 196.7910 ++YCCCC 11698.688778 4 0.0028 2335 | 5/40
52 h-m-p 0.0003 0.0014 739.1422 YYCCC 11689.347802 4 0.0004 2384 | 5/40
53 h-m-p 0.0024 0.0158 134.5635 YCCC 11673.325100 3 0.0042 2432 | 4/40
54 h-m-p 0.0017 0.0083 169.0068 --YYCC 11672.853478 3 0.0000 2481 | 4/40
55 h-m-p 0.0000 0.0076 163.0297 +++YYYCC 11663.047850 4 0.0027 2532 | 4/40
56 h-m-p 0.0023 0.0113 36.0364 YC 11660.499293 1 0.0045 2576 | 4/40
57 h-m-p 0.0122 0.0609 12.6292 CCC 11657.474959 2 0.0148 2623 | 4/40
58 h-m-p 0.0080 0.0398 22.3096 CCCC 11651.922330 3 0.0099 2672 | 4/40
59 h-m-p 0.0053 0.0265 38.0615 YCCC 11634.125205 3 0.0126 2720 | 4/40
60 h-m-p 0.0025 0.0125 50.5988 ++ 11583.581675 m 0.0125 2763 | 4/40
61 h-m-p 0.0008 0.0039 61.6468 +CYCYYCC 11567.940645 6 0.0036 2816 | 4/40
62 h-m-p 0.0000 0.0001 352.0216 ++ 11566.431860 m 0.0001 2859 | 4/40
63 h-m-p 0.0003 0.0194 54.6736 ++YCCCC 11551.173265 4 0.0093 2911 | 4/40
64 h-m-p 0.0051 0.0257 61.4737 CCCC 11541.410382 3 0.0073 2960 | 4/40
65 h-m-p 0.0044 0.0220 43.6857 +YC 11534.590063 1 0.0110 3005 | 4/40
66 h-m-p 0.0057 0.0284 29.5556 +YCCC 11527.656565 3 0.0158 3054 | 4/40
67 h-m-p 0.0031 0.0154 52.8683 ++ 11513.576847 m 0.0154 3097 | 4/40
68 h-m-p 0.0000 0.0000 47.3931
h-m-p: 4.79275891e-20 2.39637945e-19 4.73931132e+01 11513.576847
.. | 4/40
69 h-m-p 0.0000 0.0000 11665.3531 YYCYCYC 11506.485068 6 0.0000 3189 | 4/40
70 h-m-p 0.0000 0.0000 448.9519 +YYCC 11505.062315 3 0.0000 3237 | 4/40
71 h-m-p 0.0000 0.0003 455.4380 +CCCC 11500.975143 3 0.0001 3287 | 4/40
72 h-m-p 0.0000 0.0000 595.5619 +YYCYC 11499.333119 4 0.0000 3336 | 4/40
73 h-m-p 0.0000 0.0002 328.6454 YCYCC 11496.551527 4 0.0001 3385 | 4/40
74 h-m-p 0.0001 0.0004 225.9213 +YC 11492.556378 1 0.0004 3430 | 4/40
75 h-m-p 0.0000 0.0001 721.6849 ++ 11487.962063 m 0.0001 3473 | 5/40
76 h-m-p 0.0000 0.0001 1067.9332 +YYCCCC 11483.474340 5 0.0001 3525 | 5/40
77 h-m-p 0.0000 0.0002 1694.3588 +YCCC 11475.563439 3 0.0001 3574 | 5/40
78 h-m-p 0.0001 0.0004 648.5583 +CCCC 11470.407519 3 0.0002 3624 | 5/40
79 h-m-p 0.0001 0.0004 287.3021 ++ 11462.097768 m 0.0004 3667 | 6/40
80 h-m-p 0.0001 0.0005 191.7797 YCYCCC 11458.614727 5 0.0003 3718 | 5/40
81 h-m-p 0.0000 0.0001 541.1489 +YYCCC 11457.297484 4 0.0001 3768 | 5/40
82 h-m-p 0.0002 0.0064 178.9342 ++YCCC 11444.978582 3 0.0027 3818 | 5/40
83 h-m-p 0.0010 0.0048 94.5121 +CCC 11438.243797 2 0.0036 3866 | 5/40
84 h-m-p 0.0007 0.0036 44.9180 ++ 11435.489961 m 0.0036 3909 | 6/40
85 h-m-p 0.0033 0.0190 48.9276 CCCC 11432.437511 3 0.0038 3958 | 5/40
86 h-m-p 0.0019 0.0118 97.1097 YCCC 11431.581502 3 0.0012 4006 | 5/40
87 h-m-p 0.0018 0.0290 69.0990 +YYC 11427.463159 2 0.0063 4052 | 5/40
88 h-m-p 0.0007 0.0037 69.1173 ++ 11424.635246 m 0.0037 4095 | 6/40
89 h-m-p 0.0102 0.0508 14.5316 YYCC 11423.713653 3 0.0073 4142 | 5/40
90 h-m-p 0.0007 0.0055 151.2791 YCCC 11422.558069 3 0.0011 4190 | 5/40
91 h-m-p 0.0057 0.0594 29.8536 +YCCC 11414.958739 3 0.0319 4239 | 5/40
92 h-m-p 0.0179 0.0894 31.2031 CYC 11409.979589 2 0.0191 4285 | 5/40
93 h-m-p 0.0139 0.0693 40.7538 CCCCC 11402.938116 4 0.0181 4336 | 5/40
94 h-m-p 0.0118 0.0589 41.4842 YCCC 11394.535477 3 0.0221 4384 | 4/40
95 h-m-p 0.0008 0.0039 472.6043 CCC 11393.962579 2 0.0002 4431 | 4/40
96 h-m-p 0.0015 0.0323 59.3973 ++YCCC 11385.013299 3 0.0186 4481 | 4/40
97 h-m-p 0.0056 0.0282 34.8053 YCCC 11381.761726 3 0.0124 4529 | 4/40
98 h-m-p 0.0160 0.0799 26.0804 CC 11378.840838 1 0.0187 4574 | 4/40
99 h-m-p 0.0476 0.2723 10.2205 CCC 11377.200316 2 0.0377 4621 | 4/40
100 h-m-p 0.0252 0.1569 15.2835 YC 11376.376882 1 0.0129 4665 | 4/40
101 h-m-p 0.0207 0.1567 9.5133 YCCC 11374.549378 3 0.0439 4713 | 4/40
102 h-m-p 0.0196 0.1033 21.2933 CCC 11372.237736 2 0.0237 4760 | 4/40
103 h-m-p 0.0153 0.0764 18.1870 YCCC 11369.139978 3 0.0360 4808 | 4/40
104 h-m-p 0.0072 0.0358 18.9376 +CC 11366.400359 1 0.0295 4854 | 4/40
105 h-m-p 0.0022 0.0111 12.6343 ++ 11365.142004 m 0.0111 4897 | 4/40
106 h-m-p -0.0000 -0.0000 5.7587
h-m-p: -1.73444745e-19 -8.67223723e-19 5.75869503e+00 11365.142004
.. | 4/40
107 h-m-p 0.0000 0.0006 87.9945 YCC 11365.075868 2 0.0000 4983 | 4/40
108 h-m-p 0.0000 0.0002 95.2550 YC 11364.965628 1 0.0000 5027 | 4/40
109 h-m-p 0.0000 0.0002 80.0728 +YC 11364.757985 1 0.0001 5072 | 4/40
110 h-m-p 0.0000 0.0000 202.2299 ++ 11364.657333 m 0.0000 5115 | 5/40
111 h-m-p 0.0000 0.0001 285.3759 ++ 11364.214730 m 0.0001 5158 | 6/40
112 h-m-p 0.0001 0.0008 332.4120 YCC 11364.061114 2 0.0000 5204 | 6/40
113 h-m-p 0.0002 0.0020 46.9973 CY 11363.933735 1 0.0002 5249 | 6/40
114 h-m-p 0.0001 0.0010 82.9851 CCC 11363.802672 2 0.0001 5296 | 6/40
115 h-m-p 0.0002 0.0028 67.8189 YC 11363.631533 1 0.0003 5340 | 6/40
116 h-m-p 0.0004 0.0078 55.5863 YC 11363.313511 1 0.0008 5384 | 6/40
117 h-m-p 0.0002 0.0043 220.2580 +CYC 11362.048742 2 0.0008 5431 | 6/40
118 h-m-p 0.0013 0.0065 48.7713 YCCC 11361.821926 3 0.0007 5479 | 6/40
119 h-m-p 0.0008 0.0507 41.8502 +YCCC 11360.234905 3 0.0067 5528 | 6/40
120 h-m-p 0.0062 0.0310 34.7657 YCCC 11358.722779 3 0.0097 5576 | 6/40
121 h-m-p 0.0045 0.0227 36.2903 YCCC 11357.535556 3 0.0078 5624 | 6/40
122 h-m-p 0.0124 0.1971 23.0479 YCC 11355.890856 2 0.0210 5670 | 6/40
123 h-m-p 0.0120 0.0599 22.0904 CC 11354.765504 1 0.0175 5715 | 6/40
124 h-m-p 0.0279 0.1772 13.8971 CYC 11353.939766 2 0.0250 5761 | 6/40
125 h-m-p 0.0251 0.3083 13.8504 CCC 11353.038084 2 0.0332 5808 | 6/40
126 h-m-p 0.0124 0.1553 37.1079 CCC 11351.613799 2 0.0202 5855 | 6/40
127 h-m-p 0.0268 0.1341 24.2779 YC 11350.873117 1 0.0178 5899 | 6/40
128 h-m-p 0.0179 0.1542 24.0911 CC 11350.014528 1 0.0224 5944 | 6/40
129 h-m-p 0.0252 0.1258 9.6061 CYC 11349.718162 2 0.0229 5990 | 6/40
130 h-m-p 0.0145 0.2181 15.1996 YC 11349.098254 1 0.0331 6034 | 6/40
131 h-m-p 0.0356 0.1780 9.2478 YCC 11348.848679 2 0.0259 6080 | 6/40
132 h-m-p 0.0236 0.1698 10.1495 YC 11348.705855 1 0.0148 6124 | 6/40
133 h-m-p 0.0803 0.8420 1.8765 YC 11348.645633 1 0.0508 6168 | 6/40
134 h-m-p 0.0114 0.8499 8.3441 +CC 11348.425501 1 0.0440 6214 | 6/40
135 h-m-p 0.0526 0.5614 6.9739 YC 11348.265192 1 0.0405 6258 | 6/40
136 h-m-p 0.0328 0.1638 6.4936 YC 11348.214875 1 0.0146 6302 | 6/40
137 h-m-p 0.0403 4.1909 2.3528 +CYC 11348.005464 2 0.2042 6349 | 6/40
138 h-m-p 0.2755 5.1041 1.7442 CCC 11347.855987 2 0.2492 6396 | 6/40
139 h-m-p 0.6013 5.7888 0.7229 CC 11347.780348 1 0.5170 6441 | 6/40
140 h-m-p 0.5105 5.8445 0.7321 YC 11347.756684 1 0.2254 6519 | 6/40
141 h-m-p 1.2284 8.0000 0.1343 CC 11347.754122 1 0.4093 6598 | 6/40
142 h-m-p 0.2506 8.0000 0.2194 YC 11347.750792 1 0.4251 6676 | 6/40
143 h-m-p 1.6000 8.0000 0.0153 C 11347.750429 0 1.5807 6753 | 6/40
144 h-m-p 1.6000 8.0000 0.0115 C 11347.750274 0 2.4783 6830 | 6/40
145 h-m-p 1.6000 8.0000 0.0072 C 11347.750228 0 1.8559 6907 | 6/40
146 h-m-p 1.6000 8.0000 0.0018 Y 11347.750223 0 1.1609 6984 | 6/40
147 h-m-p 1.6000 8.0000 0.0003 C 11347.750222 0 1.8734 7061 | 6/40
148 h-m-p 1.6000 8.0000 0.0001 C 11347.750222 0 1.7028 7138 | 6/40
149 h-m-p 1.6000 8.0000 0.0001 Y 11347.750222 0 1.1283 7215 | 6/40
150 h-m-p 1.6000 8.0000 0.0000 C 11347.750222 0 1.6000 7292 | 6/40
151 h-m-p 1.6000 8.0000 0.0000 ---------------N 11347.750222 0 0.0000 7384
Out..
lnL = -11347.750222
7385 lfun, 88620 eigenQcodon, 2843225 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -11432.571734 S = -11155.180128 -306.343071
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 335 patterns 1:11:48
did 20 / 335 patterns 1:11:48
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did 335 / 335 patterns 1:11:54end of tree file.
Time used: 1:11:55
The loglikelihoods for models M1, M2, M7 and M8 are -11441.475544 -11441.475544 -11350.660993 -11347.750222 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
16BO133_N_ASO66816_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus -MSDNGTQNQRSASR-ITFGGPSDSTDNNQDGGRSGARPKQR------------------
Anlong_103_NA_ARI44802_1_2013_China_Bat_Bat_coronavirus MSDNGPQPSQRSAPR-ITFGGPTDSIDNNQNGGRNGARPKQR------------------
Anlong_43_NA_ARI44792_1_2013_China_Bat_Bat_coronavirus -------------MSSVKFE-------------ASGRTGRTP------------------
Anlong_112_NA_ARI44807_1_2013_China_Bat_Bat_coronavirus MSDNGPQPSQRSAPR-ITFGGPTDSIDNNQNGGRNGARPKQR------------------
Anlong_57_NA_ARI44797_1_2013_China_Bat_Bat_coronavirus -------------MSSVKFE-------------ASGRTGRTP------------------
BtCoV92_N_QEH60467_1_2015_Singapore_Bat_Bat_coronavirus MSGRNKPRSGTSTPK-VTFKQESDGSD-SESERRASIRPKNK-------G----SSFKPE
BtCoV_Rh_YN2012_Ra13591_N_QBP43296_1_2013_06_01_China_Unknown_Bat_coronavirus -------------MASVSFE------------QQRGRSGRVP------------------
BtCoV_Rh_YN2012_Rs3376_N_QBP43263_1_2012_05_19_China_Unknown_Bat_coronavirus -------------MASVSFD-----------DQPRGRGGRMP------------------
BtCoV_Rh_YN2012_Rs4125_N_QBP43274_1_2012_09_16_China_Unknown_Bat_coronavirus -------------MASVSFD-----------DQSRGRSGRVP------------------
BtCoV_Rh_YN2012_Rs4259_N_QBP43285_1_2013_04_17_China_Unknown_Bat_coronavirus -------------MASVSFD-----------DQSRGRSGRVP------------------
CMR66_NA_AWV67059_1_2013_12_Cameroon_Bat_Bat_coronavirus MSGRNRSRPGTPSPK-VTFKQESDGSD-SESDRRNGNRTGARSKNNNGRS----SAPRPE
CMR704_P12_N_YP_009824993_1_2013_12_Cameroon_Bat_Bat_coronavirus MSGRRTPR---NQPQ-VSFKNESD-SD-SESGARSQSRGRNSNNNNNGGNGGARRKDKPE
CMR705_P13_NA_AWV67075_1_2013_12_Cameroon_Bat_Bat_coronavirus MSGRRTPR---NQPQ-VSFKNESD-SD-SESGARSQSRGRNSNNNNNGGNGGARRKDKPE
CMR900_NA_AWV67051_1_2013_12_Cameroon_Bat_Bat_coronavirus MSGRRTPR---NQPQ-VSFKNESD-SD-SESGQRSQSRGRNPNNNNNGGNGGARRKDKPE
JPDB144_N_ANA96046_1_2012_12_China_Bat_Bat_coronavirus -------MATPAAPRTISFA---DNND-NQTNQQQRGRGRNP------------------
JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus -MSDNGTQNQRSASR-ITFGGPSDSTDNNQDGGRSGARPKQR------------------
Jiyuan_84_NA_ARI44812_1_2012_China_Bat_Bat_coronavirus -MSDNGPQNQRSAPR-ITFGGPSDSTDNNQDGGRSGVRPKQR------------------
PREDICT_PDF_2180_N_ARJ34233_1_2013_02_20_Uganda_Bat_Bat_coronavirus -------MATPAAPRAVSFA---DNND-NSNNNQSRGRGRNP------------------
Vs_CoV_1_N_BBJ36015_1_NA_Japan_Bat_Bat_coronavirus -------MATPAAPRAVTFG---DNNDNNTNTQQSRGRGRTP------------------
:.*
16BO133_N_ASO66816_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus RPQGLPNNTASWFTALTQHGKEGL-KFPQGQGVPINTNSGRDDQIGYYRRATRRVRGGDG
Anlong_103_NA_ARI44802_1_2013_China_Bat_Bat_coronavirus RPQGLPNNTASWFTALTQHGKEEL-RFSRGQGVPINTNSGPDDQIGYYRRATRRVRGGDG
Anlong_43_NA_ARI44792_1_2013_China_Bat_Bat_coronavirus ---------LSYFAPITVTSGKNLWNVLPKNAVPSGKG-KANQQVGYWSEQTR-WKMQKG
Anlong_112_NA_ARI44807_1_2013_China_Bat_Bat_coronavirus RPQGLPNNTASWFTALTQHGKEEL-RFSRGQGVPINTNSGPDDQIGYYRRATRRVRGGDG
Anlong_57_NA_ARI44797_1_2013_China_Bat_Bat_coronavirus ---------LSYFAPITVTSGKNLWNVLPKNAVPSGKG-KANQQVGYWSEQTR-WKMQKG
BtCoV92_N_QEH60467_1_2015_Singapore_Bat_Bat_coronavirus KPKAAPPQNVSWFAPLVQTGKNDL-RFPRGQGVPISQGVDPVYNHGYWLRTQRSFQKG-G
BtCoV_Rh_YN2012_Ra13591_N_QBP43296_1_2013_06_01_China_Unknown_Bat_coronavirus ---------LSFFYPVIVTDNTPFWKVMPNNAVPNGMG-TKDERIGYWNEQKR-WRMRKG
BtCoV_Rh_YN2012_Rs3376_N_QBP43263_1_2012_05_19_China_Unknown_Bat_coronavirus ---------LSYYYPIMVTDGKPLFKVLQSNAVPTGKG-TKEQQIGYWNMQAR-WRMVKG
BtCoV_Rh_YN2012_Rs4125_N_QBP43274_1_2012_09_16_China_Unknown_Bat_coronavirus ---------LSFYNPVMVTDDKPLFKVMPHNAVPTGKG-NKSQQIGYWNMQPR-WRMVKG
BtCoV_Rh_YN2012_Rs4259_N_QBP43285_1_2013_04_17_China_Unknown_Bat_coronavirus ---------LSFYNPVMVTDDKPLFKVMPHNAVPTGKG-NKSQQIGYWNMQPR-WRMVKG
CMR66_NA_AWV67059_1_2013_12_Cameroon_Bat_Bat_coronavirus KPKAAPLQNVSWFAPLVQTGKSEL-RFARGEGVPVSQGVDPTYEHGYWLRTQRSFQKG-G
CMR704_P12_N_YP_009824993_1_2013_12_Cameroon_Bat_Bat_coronavirus KPRAAPAQNVSWFLPIVQTGKQDL-RFARGEGVPVSQGVDITYQHGYWLRRQRTFNKG-G
CMR705_P13_NA_AWV67075_1_2013_12_Cameroon_Bat_Bat_coronavirus KPRAAPAQNVSWFLPIVQTGKQDL-RFARGEGVPVSQGVDITYQHGYWLRRQRTFNKG-G
CMR900_NA_AWV67051_1_2013_12_Cameroon_Bat_Bat_coronavirus KPRAAPQQNVSWFLPLVQTGKNDL-RFPRGQGVPITQGVDPTFQHGYWLFRQRSFQKG-G
JPDB144_N_ANA96046_1_2012_12_China_Bat_Bat_coronavirus KPRPAPNNTVSWYTGLTQHGKNPL-AFPPGQGVPLNANSTTAQNAGYWRRQDRKINTGNG
JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus RPQGLPNNTASWFTALTQHGKEGL-KFPQGQGVPINTNSGTDDQIGYYRRATRRVRGGDG
Jiyuan_84_NA_ARI44812_1_2012_China_Bat_Bat_coronavirus RPQGLPNNTASWFTALTQHGKEGL-KFPQGQGVPINTNSGRDDQIGYYRRATRRVRGGDG
PREDICT_PDF_2180_N_ARJ34233_1_2013_02_20_Uganda_Bat_Bat_coronavirus KPRPAPNNTVSWYTGLTQHGKVSL-SFPPGQGVPLNANSTPAQNAGYWRRQDRKINTGNG
Vs_CoV_1_N_BBJ36015_1_NA_Japan_Bat_Bat_coronavirus KPRPAPNNTVSWYTGLTQHGKVPL-SFPPGQGVPLNANSTPAQNAGYWRRQDRKINTGNG
*:: : . : . :.** . . **: * . *
16BO133_N_ASO66816_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus KMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVAIEGALNTPKDHIGTRNPNNNAAIV-
Anlong_103_NA_ARI44802_1_2013_China_Bat_Bat_coronavirus KMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATV-
Anlong_43_NA_ARI44792_1_2013_China_Bat_Bat_coronavirus ERVEKPSFWHFYFLGTGPHADAKFRERIQGVVWVSKANADLKP-TDLGTRSKARSLIIPK
Anlong_112_NA_ARI44807_1_2013_China_Bat_Bat_coronavirus KMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATV-
Anlong_57_NA_ARI44797_1_2013_China_Bat_Bat_coronavirus ERVEKPSFWHFYFLGTGPHADAKFRERIQGVVWVSKANADLKP-TDLGTRSKARSLITPK
BtCoV92_N_QEH60467_1_2015_Singapore_Bat_Bat_coronavirus KLVQANPRWYFYYTGTGRYGDMRYGTKNPDLIWVGEEGANVNRVGDMGTRNPNNDGAIS-
BtCoV_Rh_YN2012_Ra13591_N_QBP43296_1_2013_06_01_China_Unknown_Bat_coronavirus QRIDLPSKWHFYFLGTGPHKEASFRQRLDGVYWVAVNGAKTQP-TSLGSRKKSAAMMVPQ
BtCoV_Rh_YN2012_Rs3376_N_QBP43263_1_2012_05_19_China_Unknown_Bat_coronavirus VRKDLDPKWHFYYLGTGPHADAPFRQRLEGVFWVAVQGSKTEP-TGLGVRKRNAPLLKPQ
BtCoV_Rh_YN2012_Rs4125_N_QBP43274_1_2012_09_16_China_Unknown_Bat_coronavirus QRKDLTPKWHFYYLGTGPHAEAPFRQKLDGVFWVAVQGSDTQP-TGLGVRKRNQPLIKPQ
BtCoV_Rh_YN2012_Rs4259_N_QBP43285_1_2013_04_17_China_Unknown_Bat_coronavirus QRKDLTPKWHFYYLGTGPHAEAPFRQKLDGVFWVAVQGSDTQP-TGLGVRKRNQPLIKPQ
CMR66_NA_AWV67059_1_2013_12_Cameroon_Bat_Bat_coronavirus KQVLANPRWYFYYTGTGRFGDLRFGTKNPDIVWVGQEGANINRLGDMGTRNPSNDSAIP-
CMR704_P12_N_YP_009824993_1_2013_12_Cameroon_Bat_Bat_coronavirus KQVQANPRWFFYYTGTGPYEGLRYGSRNNDIIWVGNEGANVNRLGDMGTRNPANDAGIP-
CMR705_P13_NA_AWV67075_1_2013_12_Cameroon_Bat_Bat_coronavirus KQVQANPRWFFYYTGTGPYEGLRYGSRNNDIIWVGNEGANVNRLGDMGTRNPANDAGIP-
CMR900_NA_AWV67051_1_2013_12_Cameroon_Bat_Bat_coronavirus KQVMANPRWYFYYTGTGPYEGLRYGSKSNDLIWVGNEGANVNRIGDMGTRNPANDAGLV-
JPDB144_N_ANA96046_1_2012_12_China_Bat_Bat_coronavirus VK-QLSPRWFFYYTGTGPEANLPFRSVKDGIVWVYEEGATDAP-SVFGTRNPANDAAIV-
JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus KMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIV-
Jiyuan_84_NA_ARI44812_1_2012_China_Bat_Bat_coronavirus KMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIV-
PREDICT_PDF_2180_N_ARJ34233_1_2013_02_20_Uganda_Bat_Bat_coronavirus TK-SLAPRWYFYYTGTGPEANLPFRAVKDGIIWVHEDGATDAP-STFGTRNPNNDAAIV-
Vs_CoV_1_N_BBJ36015_1_NA_Japan_Bat_Bat_coronavirus TK-QLAPRWFFYYTGTGPEANLPFRAVKDGIVWVHEEGATDAP-STFGTRNPNNDAAIV-
. *.**: *** : .: ** .: :* *.
16BO133_N_ASO66816_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus --LQLPQGTTLP-KGFYAEGSRSGSQASSR-----SSSRSRGNSRTSTPG----------
Anlong_103_NA_ARI44802_1_2013_China_Bat_Bat_coronavirus --LQLPQGTTLP-KGFYAEGSRGGSQASSR-----SSSRSRGNSRNSTPG----------
Anlong_43_NA_ARI44792_1_2013_China_Bat_Bat_coronavirus FDIELPDDIEIV-DKSSAPNSRGNSRSQSRGAKSGSKSRGNSQTRDNSKS-RDNSNNRGK
Anlong_112_NA_ARI44807_1_2013_China_Bat_Bat_coronavirus --LQLPQGTTLP-KGFYAEGSRGGSQASSR-----SSSRSRGNSRNSTPG----------
Anlong_57_NA_ARI44797_1_2013_China_Bat_Bat_coronavirus FDIELPDDIEIV-DKSSAPNSRGNSRSQSRGAKSGSKSRGNSQTRDNSKS-RDNSNNRGK
BtCoV92_N_QEH60467_1_2015_Singapore_Bat_Bat_coronavirus --VQLHDG--IP-KGFYAEGRNSRSNSRNS-----SRNSSRASSQGNSRA----------
BtCoV_Rh_YN2012_Ra13591_N_QBP43296_1_2013_06_01_China_Unknown_Bat_coronavirus FSVSLPSNIQVQTENASAPASRNQSQNR-------SQSANRSQSRGPNQNVNQNQ-----
BtCoV_Rh_YN2012_Rs3376_N_QBP43263_1_2012_05_19_China_Unknown_Bat_coronavirus FSFKLPVNVEIQEDSASRPNSRNPSSNRDR-----SQSGNRSASSGPKQGNSQNQ---NN
BtCoV_Rh_YN2012_Rs4125_N_QBP43274_1_2012_09_16_China_Unknown_Bat_coronavirus FAVKLPANIEIQEENASKPNSRNPSTNRDR-----SQSGNRSASRGPQQGNTQNQNQNNN
BtCoV_Rh_YN2012_Rs4259_N_QBP43285_1_2013_04_17_China_Unknown_Bat_coronavirus FAVKLPANIEIQEENASKPNSRNPSTNRDR-----SQSGNRSASRGPQQGNTQNQNQNNN
CMR66_NA_AWV67059_1_2013_12_Cameroon_Bat_Bat_coronavirus --VQLTGG--IP-KGFYAEGRGSRGNSRSS-----SRNSSRASSRGNSRA----------
CMR704_P12_N_YP_009824993_1_2013_12_Cameroon_Bat_Bat_coronavirus --VQLAEG--IP-KGFYAEGRNSRGNSRNS-----SRSSSRGSSNANSRN----------
CMR705_P13_NA_AWV67075_1_2013_12_Cameroon_Bat_Bat_coronavirus --VQLAEG--IP-KGFYAEGRNSRGNSRNS-----SRSSSRGSSNANSRN----------
CMR900_NA_AWV67051_1_2013_12_Cameroon_Bat_Bat_coronavirus --VQLADG--IP-KGFYAEGRNSRGNSRNS-----SRSSSRGSSNANSRN----------
JPDB144_N_ANA96046_1_2012_12_China_Bat_Bat_coronavirus --CQFAPGTLIP-KNFHIEGTGGNSQSSSR-----ASSNSRNSSRSNSRG----------
JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus --LQLPQGTTLP-KGFYAEGSRSGSQASSR-----SSSRSRGNSRTSTPG----------
Jiyuan_84_NA_ARI44812_1_2012_China_Bat_Bat_coronavirus --LQLPQGTTLP-KGFYAEGSRNGSQASSR-----SSSRSRGNSRTSTPG----------
PREDICT_PDF_2180_N_ARJ34233_1_2013_02_20_Uganda_Bat_Bat_coronavirus --TQFAPGTKLP-KNFHIEGTGGNSQSSSR-----ASSASRNSSRSNSRG----------
Vs_CoV_1_N_BBJ36015_1_NA_Japan_Bat_Bat_coronavirus --TQFAPGTKLP-KNFHIEGTGGNSQSSSR-----ASSASRGSSRSSSRG----------
.: . : . . . : . .. :
16BO133_N_ASO66816_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus -----------SSRGNSPARVASGGGE----TALALLLLDRLNQL---------ESKVSG
Anlong_103_NA_ARI44802_1_2013_China_Bat_Bat_coronavirus -----------SSRGNSPARMASGGGE----TALALLLLDRLNQL---------ESKVSG
Anlong_43_NA_ARI44792_1_2013_China_Bat_Bat_coronavirus SQSRNNSRSRGQQRNNNQQRQGSGNAGNNT-ADLAAAIVLALEKAGLARDT---EKAPKK
Anlong_112_NA_ARI44807_1_2013_China_Bat_Bat_coronavirus -----------SSRGNSPARMAIGGGE----TALALLLLDRLNQL---------ESKVSG
Anlong_57_NA_ARI44797_1_2013_China_Bat_Bat_coronavirus SQSRNNSRSRGQQRNNNQQRQGSGNAGNNT-ADLAAAIVLALEKAGLARDT---EKAPKK
BtCoV92_N_QEH60467_1_2015_Singapore_Bat_Bat_coronavirus -----------GSRNASPGRNAPNVASGN--EPWMAYLVQKLEAL---------ENKVNG
BtCoV_Rh_YN2012_Ra13591_N_QBP43296_1_2013_06_01_China_Unknown_Bat_coronavirus -----NTNGNQRARSQSRNRGSNNNQPQNQ-VDIVAAVKAALQQLGVGNQNQGGTGKKSK
BtCoV_Rh_YN2012_Rs3376_N_QBP43263_1_2012_05_19_China_Unknown_Bat_coronavirus SSQGNNSNNQQRSRNNSKSRGQNNQSNNSQ-ADIVAAVKQALKELGVSPQEK--KNKQKG
BtCoV_Rh_YN2012_Rs4125_N_QBP43274_1_2012_09_16_China_Unknown_Bat_coronavirus SSKGNQNNNQQRSRNNSKSRSQNNSQPQNQQVDIVAAVKQALKELGVSPQEK--KQKQKG
BtCoV_Rh_YN2012_Rs4259_N_QBP43285_1_2013_04_17_China_Unknown_Bat_coronavirus SSKGNQNNNQQRSRNNSKSRSQNNSQPQNQQVDIVAAVKQALKELGVSPQEK--KQKQKG
CMR66_NA_AWV67059_1_2013_12_Cameroon_Bat_Bat_coronavirus -----------GSRGASPGRPAATPSA----EPWMAYLVQKLEKL---------ESQVNG
CMR704_P12_N_YP_009824993_1_2013_12_Cameroon_Bat_Bat_coronavirus -----------QSRSNSPGRGSAPPSGG---EPWMAYLIQKLENL---------EQRVDG
CMR705_P13_NA_AWV67075_1_2013_12_Cameroon_Bat_Bat_coronavirus -----------QSRSNSPGRGSAPPSGG---EPWMAYLIQKLENL---------EQRVDG
CMR900_NA_AWV67051_1_2013_12_Cameroon_Bat_Bat_coronavirus -----------QSRSNSPGRGSAPPSGS---EPWMAYLIQKLENL---------EQRVDG
JPDB144_N_ANA96046_1_2012_12_China_Bat_Bat_coronavirus ------GRSTSNSRGTSPVSHGVGSAESLAALPLLLDLQKRLADL------------ESG
JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus -----------SSRGNSPARVASGGGE----TALALLLLDRLNQL---------ESKVSG
Jiyuan_84_NA_ARI44812_1_2012_China_Bat_Bat_coronavirus -----------SSRGNSPARVASGGGE----TALALLLLDRLNQL---------ESKVSG
PREDICT_PDF_2180_N_ARJ34233_1_2013_02_20_Uganda_Bat_Bat_coronavirus ------SRSGNSSRGTSPGPSGVGAVGG---EMLYLDLLNRLQAL------------ESG
Vs_CoV_1_N_BBJ36015_1_NA_Japan_Bat_Bat_coronavirus ------ARSGNSSRSASPGPAGIGAVGGDASSILYLSLLKRLEDL------------EAG
*. . : *
16BO133_N_ASO66816_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus KGQ-QQQGQTVTKKSASEASKKPRQ-------KRTATKQYNVTQAFGRRGPDQTQGNFGD
Anlong_103_NA_ARI44802_1_2013_China_Bat_Bat_coronavirus KG--QQQGQTVTKKSAAEASKKPRQ-------KRTATKQYNVTQAFGRRGPEQTQGNFGD
Anlong_43_NA_ARI44792_1_2013_China_Bat_Bat_coronavirus ESPNNNKKQKSRASSPAPAQSKNTDQLTKVVWKRVPDPSCNVKQCF---GPRSTYQNFGD
Anlong_112_NA_ARI44807_1_2013_China_Bat_Bat_coronavirus KG--QQQGQTVTKKSAAEASKKPRQ-------KRTATKQYNVTQAFGRRGPEQTQGNFGD
Anlong_57_NA_ARI44797_1_2013_China_Bat_Bat_coronavirus ESPNNNKKQKSRASSPAPAQSKNTDQLTKVVWKRMPDPSCNVKQCF---GPRSTYQNFGD
BtCoV92_N_QEH60467_1_2015_Singapore_Bat_Bat_coronavirus PKE-TKKPVQVTKNEAAANAKKLRH-------KRTPHKGSGVTTNYGRRGPGDLEGNFGD
BtCoV_Rh_YN2012_Ra13591_N_QBP43296_1_2013_06_01_China_Unknown_Bat_coronavirus SNSGVNTPKEQRAKSPAKTPPVQRKQMERPVWKRVPNSSENVTACF---GPRDAVHNFGD
BtCoV_Rh_YN2012_Rs3376_N_QBP43263_1_2012_05_19_China_Unknown_Bat_coronavirus STSGNNTPKEQRSKSPAPSPNTQRKQIERPVWKRVPTSAEDVTVCF---GPRDTQQNFGD
BtCoV_Rh_YN2012_Rs4125_N_QBP43274_1_2012_09_16_China_Unknown_Bat_coronavirus NTSGNNTPKEQRAKSPARSPSSPRKQLERPVWKRVPTEAENVTQCF---GPRDTLRNFGD
BtCoV_Rh_YN2012_Rs4259_N_QBP43285_1_2013_04_17_China_Unknown_Bat_coronavirus NTSGNNTPKEQRAKSPARSPASPRKQLERPVWKRVPTEAENVTQCF---GPRDTLRNFGD
CMR66_NA_AWV67059_1_2013_12_Cameroon_Bat_Bat_coronavirus TKPVTKNPLQVTKNEAAANAKKLRH-------KRTAHKGSGVTMNYGRRGPGDLEGNFGD
CMR704_P12_N_YP_009824993_1_2013_12_Cameroon_Bat_Bat_coronavirus KKS-DKQPVKVTKNVASENAKKLRH-------KRTAHKGSNATQNYGRRGPGNLEGNFGD
CMR705_P13_NA_AWV67075_1_2013_12_Cameroon_Bat_Bat_coronavirus KKS-DKQPVKVTKNVASENAKKLRH-------KRTAHKGSNATQNYGRRGPGNLEGNFGD
CMR900_NA_AWV67051_1_2013_12_Cameroon_Bat_Bat_coronavirus KKS-DKQPVKVTKNVASENAKKLRH-------KRTAHKGSNVTQNYGRRGPGNLEGNFGD
JPDB144_N_ANA96046_1_2012_12_China_Bat_Bat_coronavirus K---SKQPKVVTKKDASAAKNKMRH-------KRVATKNFNVTQAFGLRGPGPLQGNFGD
JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus KGQ-QQQGQTVTKKSASEASKKPRQ-------KRTATKQYNVTQAFGRRGPDQTQGNFGD
Jiyuan_84_NA_ARI44812_1_2012_China_Bat_Bat_coronavirus KGQ-QQQGQTVTKKSASEASKKPRQ-------KRTATKQYNVTQAFGRRGPDQTQGNFGD
PREDICT_PDF_2180_N_ARJ34233_1_2013_02_20_Uganda_Bat_Bat_coronavirus KTK-QAQPKVITKKDAVAAKNKMRH-------KRVATKGFNMVQAFGLRGPGDLQGNFGD
Vs_CoV_1_N_BBJ36015_1_NA_Japan_Bat_Bat_coronavirus KS--KSAPKVVTKKDAAAAKNKMRH-------KRVATKSFNMVQAFGRRGPGDLQGNFGD
. . . ** . . : ** ****
16BO133_N_ASO66816_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus QELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGT------WLTYHGAIKLDDK
Anlong_103_NA_ARI44802_1_2013_China_Bat_Bat_coronavirus QELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGT------WLTYHGAIKLDDK
Anlong_43_NA_ARI44792_1_2013_China_Bat_Bat_coronavirus EDAVEKGVRAKHYPSWAELTPTTAALLFGGEVMTVEDGEDI------VIQYTYQMRVPKT
Anlong_112_NA_ARI44807_1_2013_China_Bat_Bat_coronavirus QELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGT------WLTYHGAIKLDDK
Anlong_57_NA_ARI44797_1_2013_China_Bat_Bat_coronavirus EEAVEKGVRAKHYPSWAELTPNTAALLFGGEVMTVEDGEDI------VIQYTYQMRVPKT
BtCoV92_N_QEH60467_1_2015_Singapore_Bat_Bat_coronavirus LNMLKLGTDDSRFPAAAQMAPNVASFLFMSHFSVREENDAL------WLHYKGAIKLPKD
BtCoV_Rh_YN2012_Ra13591_N_QBP43296_1_2013_06_01_China_Unknown_Bat_coronavirus SDVVHHGTDAKHWPQLAELIPTPAALAFGSEISTTEVGDKV------EITYTYKMKVDKA
BtCoV_Rh_YN2012_Rs3376_N_QBP43263_1_2012_05_19_China_Unknown_Bat_coronavirus QDLVRHGVDAKHYPQLAEFVPGTAALLFGGEVSTRESGEDV------EITFHYKLKVKKS
BtCoV_Rh_YN2012_Rs4125_N_QBP43274_1_2012_09_16_China_Unknown_Bat_coronavirus RELTLRGVEAKNYPQIAEFVPTPAALLFGGEVSTREAGEDV------EITFHYKMKVKKD
BtCoV_Rh_YN2012_Rs4259_N_QBP43285_1_2013_04_17_China_Unknown_Bat_coronavirus RELTLRGVEAKNYPQIAEFVPTPAALLFGGEVSTREAGEDV------EITFHYKMKVKKD
CMR66_NA_AWV67059_1_2013_12_Cameroon_Bat_Bat_coronavirus LDMLKLGTDDPRFAAAAQMAPNVSSFLFMSHLSTREEGDAM------WLHYKGAIKLPKD
CMR704_P12_N_YP_009824993_1_2013_12_Cameroon_Bat_Bat_coronavirus QEFLKLGTDDPRFPVVAQMAPNTSSFVFMSHFTPRYEADAL------WLDYTGSIKLPRD
CMR705_P13_NA_AWV67075_1_2013_12_Cameroon_Bat_Bat_coronavirus QEFLKLGTDDPRFPVVAQMAPNTSSFVFMSHFTPRYEADAL------WLDYTGSIKLPRD
CMR900_NA_AWV67051_1_2013_12_Cameroon_Bat_Bat_coronavirus QDFLKLGTDDPRFPVVAQMAPNTSSFVFMSQFTPRYESDAL------WLDYTGSIKLPRD
JPDB144_N_ANA96046_1_2012_12_China_Bat_Bat_coronavirus MNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLTHQSNDDKGEPIYFLSYSGAIKLDPK
JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus QELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGT------WLTYHGAIKLDDK
Jiyuan_84_NA_ARI44812_1_2012_China_Bat_Bat_coronavirus QELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGT------WLTYHGAIKLDDK
PREDICT_PDF_2180_N_ARJ34233_1_2013_02_20_Uganda_Bat_Bat_coronavirus LQLNKLGTEDPRWPQIAELAPSASAFIGMSQFKLTHQSNDTDGAPVYFLRYSGAIKLDPK
Vs_CoV_1_N_BBJ36015_1_NA_Japan_Bat_Bat_coronavirus LQLNKLGTEDPRWPQIAELAPSASAFMGMSQFKLTHQSNDADGSPVYFLRYSGAIKLDPK
: *. .:. *:: * ::: ... . : : :::
16BO133_N_ASO66816_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus DPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----------------------
Anlong_103_NA_ARI44802_1_2013_China_Bat_Bat_coronavirus DPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----------------------
Anlong_43_NA_ARI44792_1_2013_China_Bat_Bat_coronavirus TPALQTFL----PQVSAFAN-----SGGDDASESGQD-----------------------
Anlong_112_NA_ARI44807_1_2013_China_Bat_Bat_coronavirus DPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----------------------
Anlong_57_NA_ARI44797_1_2013_China_Bat_Bat_coronavirus TPALQTFL----PQVSAFAN-----ASGDDESESGQE-----------------------
BtCoV92_N_QEH60467_1_2015_Singapore_Bat_Bat_coronavirus DPNYDQWTKILGENLNAYKNFPPVEPKKDKKKKEEAS--VEVAVYEDAATGTDQPIVQKI
BtCoV_Rh_YN2012_Ra13591_N_QBP43296_1_2013_06_01_China_Unknown_Bat_coronavirus DKNLPAFL----QQVSAYAQ-----P----------------------------------
BtCoV_Rh_YN2012_Rs3376_N_QBP43263_1_2012_05_19_China_Unknown_Bat_coronavirus DKNLPLFL----QQVSAYAL-----P----------------------------------
BtCoV_Rh_YN2012_Rs4125_N_QBP43274_1_2012_09_16_China_Unknown_Bat_coronavirus DKNLPLFL----QQVSAYAL-----P----------------------------------
BtCoV_Rh_YN2012_Rs4259_N_QBP43285_1_2013_04_17_China_Unknown_Bat_coronavirus DKNLPLFL----QQVSAYAL-----P----------------------------------
CMR66_NA_AWV67059_1_2013_12_Cameroon_Bat_Bat_coronavirus DPNYDQWTKILAENLNAYRDFPPPAPKKDKKKKEETT--QETVIFEDASTGTDQP-VVKV
CMR704_P12_N_YP_009824993_1_2013_12_Cameroon_Bat_Bat_coronavirus DPNFPQWEKLLAENIDAYKSFPPPKPKSDKKKKSDKSDSAAGPSEDLQMQVVDPSGVQRI
CMR705_P13_NA_AWV67075_1_2013_12_Cameroon_Bat_Bat_coronavirus DPNFPQWEKLLAENIDAYKSFPPPKPKSDKKKKSDKSDSAAGPSEDLQMQVVDPSGVQRI
CMR900_NA_AWV67051_1_2013_12_Cameroon_Bat_Bat_coronavirus DPNFPQWEKLLAENLDAYKSFPPPKPKSDKKKKSDKSDSATGPSADLQMQVVDPSGVQRI
JPDB144_N_ANA96046_1_2012_12_China_Bat_Bat_coronavirus NPNYKKWLELLEANIDAYKTF----PKKERKPKTTED-----------------------
JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus DPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----------------------
Jiyuan_84_NA_ARI44812_1_2012_China_Bat_Bat_coronavirus DPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----------------------
PREDICT_PDF_2180_N_ARJ34233_1_2013_02_20_Uganda_Bat_Bat_coronavirus NPNYNKWLELIEQNVDAYKTF----PKKEKKQKAPKE-----------------------
Vs_CoV_1_N_BBJ36015_1_NA_Japan_Bat_Bat_coronavirus NPNYQKWMELLEANIDAYKSF----PVKEKKQKADDN-----------------------
::.*: .
16BO133_N_ASO66816_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus ------------------------QPLPQR-KKLPTVTLLPAADMDD---FSRQLQNSMS
Anlong_103_NA_ARI44802_1_2013_China_Bat_Bat_coronavirus ------------------------QPLPQRQKKQPIVTLLPAADMDD---FSRQLQNSMS
Anlong_43_NA_ARI44792_1_2013_China_Bat_Bat_coronavirus -------------MPVVTSAAESAAPAPASTPKLNPRAETFVPPKVDPNYFAGMKVEIMN
Anlong_112_NA_ARI44807_1_2013_China_Bat_Bat_coronavirus ------------------------QPLPQRQKKQPIVTLLPAADMDD---FSRQLQNSMS
Anlong_57_NA_ARI44797_1_2013_China_Bat_Bat_coronavirus -------------MPVVTSAAESAAPAPAPTPKLNPKAETFVPPKVDPNYFAGMKVEIMN
BtCoV92_N_QEH60467_1_2015_Singapore_Bat_Bat_coronavirus WVKDDGVQTDDEWIGGDDTVYEEEDDKPKAQRRHKKRASTASR--VT----------VAD
BtCoV_Rh_YN2012_Ra13591_N_QBP43296_1_2013_06_01_China_Unknown_Bat_coronavirus ------------------------SQANQISSQLNPVAPVFTPGMDD-------SVEIID
BtCoV_Rh_YN2012_Rs3376_N_QBP43263_1_2012_05_19_China_Unknown_Bat_coronavirus ------------------------SQAPNIPSQLNPIAPDFTPGFEM----VNETVEIID
BtCoV_Rh_YN2012_Rs4125_N_QBP43274_1_2012_09_16_China_Unknown_Bat_coronavirus ------------------------SQAPNVPSQLNPVAPDFTPSGVE---MVNETVEIID
BtCoV_Rh_YN2012_Rs4259_N_QBP43285_1_2013_04_17_China_Unknown_Bat_coronavirus ------------------------SQAPNVPSQLNPVAPDFTPSGVE---MVNETVEIID
CMR66_NA_AWV67059_1_2013_12_Cameroon_Bat_Bat_coronavirus WVKDQDAQTDDEWLGGDETVYEEEDDRPKTQRRHKKRGSTASR--VT----------IAD
CMR704_P12_N_YP_009824993_1_2013_12_Cameroon_Bat_Bat_coronavirus YMKDAADQTDDEWL-QDDTIYEDENDKPKAQRRQSIKKRNATHQRHV----------SID
CMR705_P13_NA_AWV67075_1_2013_12_Cameroon_Bat_Bat_coronavirus YMKDAADQTDDEWL-QDDTIYEDENDKPKAQRRQSIKKRNATHQRHV----------SID
CMR900_NA_AWV67051_1_2013_12_Cameroon_Bat_Bat_coronavirus YMKDAADQTDDEWL-QDDTIYEDENDKPKAQRRQSIKKRNAQRHV------------SID
JPDB144_N_ANA96046_1_2012_12_China_Bat_Bat_coronavirus ----------GASASSSASQMEDVDAKPQRKPKSRVAGSITMRSGSS--------PALQD
JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus ------------------------QPLPQR-KKQPTVTLLPAADMDD---FSRQLQNSMS
Jiyuan_84_NA_ARI44812_1_2012_China_Bat_Bat_coronavirus ------------------------QPLPQRQKKQPTVTLLPAADMDD---FSRQLQNSMS
PREDICT_PDF_2180_N_ARJ34233_1_2013_02_20_Uganda_Bat_Bat_coronavirus --------------------EPSDQMNVQPPKEQRVQGSITQRSRTP-------RPSVQP
Vs_CoV_1_N_BBJ36015_1_NA_Japan_Bat_Bat_coronavirus ------KQDSTEDSGDLFAEVVASAMASQSQPQRAPKGSITQRSRAP-----RAPVSQME
.
16BO133_N_ASO66816_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus GASADSTQA
Anlong_103_NA_ARI44802_1_2013_China_Bat_Bat_coronavirus GASADSTQA
Anlong_43_NA_ARI44792_1_2013_China_Bat_Bat_coronavirus KTISDDSTV
Anlong_112_NA_ARI44807_1_2013_China_Bat_Bat_coronavirus GASADSTQA
Anlong_57_NA_ARI44797_1_2013_China_Bat_Bat_coronavirus KTISDDSTV
BtCoV92_N_QEH60467_1_2015_Singapore_Bat_Bat_coronavirus PTNLANERS
BtCoV_Rh_YN2012_Ra13591_N_QBP43296_1_2013_06_01_China_Unknown_Bat_coronavirus QVFDTDV--
BtCoV_Rh_YN2012_Rs3376_N_QBP43263_1_2012_05_19_China_Unknown_Bat_coronavirus QVYDTPDA-
BtCoV_Rh_YN2012_Rs4125_N_QBP43274_1_2012_09_16_China_Unknown_Bat_coronavirus QVYDSFDA-
BtCoV_Rh_YN2012_Rs4259_N_QBP43285_1_2013_04_17_China_Unknown_Bat_coronavirus QVYDSFDA-
CMR66_NA_AWV67059_1_2013_12_Cameroon_Bat_Bat_coronavirus PTNAGAERS
CMR704_P12_N_YP_009824993_1_2013_12_Cameroon_Bat_Bat_coronavirus GAAQSSA--
CMR705_P13_NA_AWV67075_1_2013_12_Cameroon_Bat_Bat_coronavirus GAAQSSA--
CMR900_NA_AWV67051_1_2013_12_Cameroon_Bat_Bat_coronavirus GSAQSSA--
JPDB144_N_ANA96046_1_2012_12_China_Bat_Bat_coronavirus VNFDSEA--
JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus GASADSTQA
Jiyuan_84_NA_ARI44812_1_2012_China_Bat_Bat_coronavirus GASADSTQA
PREDICT_PDF_2180_N_ARJ34233_1_2013_02_20_Uganda_Bat_Bat_coronavirus GPMTDVNTD
Vs_CoV_1_N_BBJ36015_1_NA_Japan_Bat_Bat_coronavirus DVNQTDDRQ
>16BO133_N_ASO66816_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus ---ATGTCTGATAATGGAACCCAAAACCAACGTAGTGCCTCCCGC---ATTACATTTGGTGGACCTTCAGATTCAACTGACAATAACCAGGATGGAGGACGCAGTGGTGCACGGCCAAAACAACGC------------------------------------------------------CGACCCCAGGGTTTACCCAATAATACTGCATCTTGGTTCACAGCTCTCACTCAGCATGGTAAGGAAGGACTC---AAATTCCCTCAAGGCCAGGGAGTTCCTATCAACACCAATAGTGGCAGAGATGACCAAATTGGCTACTATAGAAGAGCCACCCGACGAGTTCGTGGTGGTGACGGTAAAATGAAAGAGCTCAGCCCCAGATGGTACTTCTATTACCTAGGAACTGGCCCAGAAGCTTCACTTCCCTATGGTGCCAATAAAGAAGGCATCGTATGGGTTGCAATTGAGGGTGCCTTGAACACACCAAAAGATCATATTGGCACCCGCAATCCTAATAACAATGCTGCCATTGTT---------CTACAACTTCCTCAAGGAACAACATTGCCA---AAAGGCTTCTACGCTGAAGGGAGCAGGAGTGGTAGTCAAGCCTCTTCTCGC---------------TCCTCATCACGTAGTCGTGGAAATTCAAGAACTTCAACTCCTGGC---------------------------------------------------------------AGCAGTAGGGGAAATTCTCCTGCTCGAGTGGCTAGCGGAGGTGGTGAA------------ACTGCCCTCGCGCTATTGCTGTTAGACAGATTGAACCAGCTG---------------------------GAGAGCAAAGTTTCTGGTAAAGGCCAA---CAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTTCAGAGGCATCTAAAAAGCCTCGGCAA---------------------AAACGTACCGCAACCAAACAGTACAATGTCACCCAAGCTTTTGGGCGACGTGGTCCAGATCAAACTCAAGGAAACTTTGGAGACCAGGAGCTAATCAGACAAGGAACTGATTATAAACACTGGCCGCAAATAGCACAGTTTGCTCCAAGTGCCTCTGCATTCTTCGGAATGTCACGCATTGGCATGGAAGTCACACCTTCGGGAACA------------------TGGCTGACTTATCATGGAGCCATTAAATTGGATGATAAAGATCCCCAATTTAAAGACAACGTCATACTGCTGAATAAGCACATTGACGCATACAAGACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAAAAGACTGATGAAGCT---------------------------------------------------------------------------------------------------------------------------------------------CAGCCTTTGCCGCAGAGA---AAGAAACTGCCCACTGTGACTCTTCTGCCTGCGGCTGATATGGATGAT---------TTCTCCAGACAACTTCAAAATTCCATGAGTGGAGCTTCTGCTGATTCAACTCAGGCA >Anlong_103_NA_ARI44802_1_2013_China_Bat_Bat_coronavirus ATGTCTGATAATGGACCCCAACCAAGCCAACGTAGTGCCCCCCGC---ATTACATTTGGTGGACCCACAGATTCAATTGACAATAACCAGAATGGAGGACGCAATGGGGCAAGGCCAAAACAACGC------------------------------------------------------CGACCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACAGCTCTCACTCAGCATGGCAAGGAGGAACTT---AGATTCTCTCGAGGCCAGGGCGTCCCTATCAACACCAATAGTGGTCCAGATGACCAAATTGGCTACTACCGAAGAGCTACCCGACGAGTTCGTGGTGGTGACGGCAAAATGAAAGAGCTCAGCCCCAGATGGTACTTCTATTACCTAGGAACTGGCCCAGAAGCTTCACTTCCCTACGGCGCTAACAAAGAAGGCATCGTATGGGTCGCAACTGAGGGAGCCTTGAACACACCTAAAGATCACATTGGCACCCGCAATCCTAATAACAATGCTGCCACCGTG---------CTACAACTTCCTCAAGGAACAACATTGCCA---AAAGGCTTCTACGCAGAAGGGAGCAGAGGCGGCAGTCAAGCCTCTTCTCGC---------------TCCTCATCACGTAGTCGCGGTAATTCAAGAAATTCGACTCCTGGC---------------------------------------------------------------AGCAGTAGGGGAAATTCTCCTGCTCGAATGGCTAGCGGAGGTGGTGAA------------ACTGCCCTCGCGCTATTGCTGCTAGACAGATTGAACCAGCTT---------------------------GAGAGCAAAGTTTCTGGTAAAGGC------CAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCATCCAAAAAGCCTCGCCAA---------------------AAACGTACTGCTACAAAACAGTACAACGTCACTCAAGCATTTGGGAGGCGTGGTCCAGAACAAACCCAAGGAAACTTTGGGGACCAAGAACTAATCAGACAAGGAACTGATTACAAACATTGGCCGCAAATTGCACAATTTGCTCCAAGTGCATCTGCATTCTTCGGAATGTCACGCATTGGCATGGAAGTCACACCTTCGGGAACA------------------TGGCTGACTTATCATGGAGCCATTAAATTGGATGATAAAGATCCACAATTCAAAGACAACGTCATATTGCTGAATAAGCACATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAAAAGACTGATGAAGCT---------------------------------------------------------------------------------------------------------------------------------------------CAGCCTTTACCGCAGAGACAAAAGAAGCAGCCCATTGTGACTCTTCTTCCTGCGGCTGACATGGATGAT---------TTCTCCAGACAACTTCAAAATTCCATGAGTGGAGCTTCTGCTGATTCAACTCAGGCA >Anlong_43_NA_ARI44792_1_2013_China_Bat_Bat_coronavirus ---------------------------------------ATGAGCTCTGTCAAATTTGAG---------------------------------------GCCTCTGGTCGCACTGGCAGAACTCCT---------------------------------------------------------------------------------CTCTCCTATTTTGCCCCTATAACAGTTACCTCTGGGAAAAATCTTTGGAACGTCCTCCCTAAAAATGCAGTCCCATCTGGAAAAGGA---AAGGCCAACCAGCAGGTTGGATACTGGTCCGAACAAACCAGA---TGGAAGATGCAGAAGGGAGAGCGGGTTGAGAAGCCTTCTTTCTGGCACTTCTACTTTCTTGGTACCGGCCCTCACGCTGATGCCAAGTTTAGAGAGCGCATCCAAGGTGTGGTGTGGGTTAGCAAAGCGAATGCTGACCTTAAACCG---ACTGACCTTGGAACCAGATCTAAGGCTAGAAGTCTCATTATTCCAAAATTTGACATTGAGTTGCCTGACGATATTGAAATCGTC---GACAAGTCCTCTGCACCAAATTCGCGGGGAAATTCGCGTAGCCAGAGCAGAGGTGCAAAGAGCGGTTCGAAGAGTCGCGGCAACTCCCAGACACGTGACAACTCCAAGTCT---CGTGACAATTCCAATAACAGAGGAAAATCTCAGTCTCGTAATAACTCACGCAGTCGCGGACAGCAGCGTAATAACAACCAGCAACGCCAGGGCTCTGGTAACGCAGGTAATAACACT---GCTGACCTCGCTGCCGCAATTGTGCTGGCCCTTGAAAAAGCTGGTCTTGCAAGAGACACT---------GAGAAGGCTCCTAAAAAGGAGAGTCCTAATAATAATAAAAAACAGAAGTCCAGAGCAAGTTCTCCTGCTCCAGCTCAGTCCAAGAACACAGACCAACTGACTAAGGTTGTGTGGAAACGCGTACCTGACCCCAGTTGCAATGTGAAACAATGCTTT---------GGACCACGCTCTACTTACCAGAACTTCGGCGACGAAGATGCTGTTGAGAAAGGTGTGCGTGCCAAGCACTATCCATCATGGGCTGAACTGACACCAACTACTGCTGCACTGCTTTTCGGCGGTGAAGTAATGACGGTTGAGGATGGTGAGGATATC------------------GTCATCCAATATACCTACCAAATGAGAGTGCCGAAAACAACACCGGCTCTCCAGACATTCCTG------------CCACAGGTGAGCGCCTTTGCCAAT---------------TCTGGCGGAGATGATGCATCTGAGTCTGGACAGGAC------------------------------------------------------------------------------------------------------------ATGCCAGTTGTTACAAGTGCTGCCGAAAGCGCTGCACCTGCACCAGCTTCTACACCAAAACTCAATCCCAGAGCCGAGACCTTTGTGCCGCCTAAAGTTGACCCCAACTATTTCGCAGGCATGAAGGTTGAGATCATGAACAAAACTATCTCAGATGACAGTACGGTT >Anlong_112_NA_ARI44807_1_2013_China_Bat_Bat_coronavirus ATGTCTGATAATGGACCCCAACCAAGCCAACGTAGTGCCCCCCGC---ATTACATTTGGTGGACCCACAGATTCAATTGACAATAACCAGAATGGAGGACGCAATGGGGCAAGGCCAAAACAACGC------------------------------------------------------CGACCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACAGCTCTCACTCAGCATGGCAAGGAGGAACTT---AGATTCTCTCGAGGCCAGGGCGTCCCTATCAACACCAATAGTGGTCCAGATGACCAAATTGGCTACTACCGAAGAGCTACCCGACGAGTTCGTGGTGGTGACGGCAAAATGAAAGAGCTCAGCCCCAGATGGTACTTCTATTACCTAGGAACTGGCCCAGAAGCTTCACTTCCCTACGGCGCTAACAAAGAAGGCATCGTATGGGTCGCAACTGAGGGAGCCTTGAACACACCTAAAGATCACATTGGCACCCGCAATCCTAATAACAATGCTGCCACCGTG---------CTACAACTTCCTCAAGGAACAACATTGCCA---AAAGGCTTCTACGCAGAAGGGAGCAGAGGCGGCAGTCAAGCCTCTTCTCGC---------------TCCTCATCACGTAGTCGCGGTAATTCAAGAAATTCGACTCCTGGC---------------------------------------------------------------AGCAGTAGGGGAAATTCTCCTGCTCGAATGGCTATCGGAGGTGGTGAA------------ACTGCCCTCGCGCTATTGCTGCTAGACAGATTGAACCAGCTT---------------------------GAGAGCAAAGTTTCTGGTAAAGGC------CAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCATCCAAAAAGCCTCGCCAA---------------------AAACGTACTGCTACAAAACAGTACAACGTCACTCAAGCATTTGGGAGGCGTGGTCCAGAACAAACCCAAGGAAACTTTGGGGACCAAGAACTAATCAGACAAGGAACTGATTACAAACATTGGCCGCAAATTGCACAATTTGCTCCAAGTGCATCTGCATTCTTCGGAATGTCACGCATTGGCATGGAAGTCACACCTTCGGGAACA------------------TGGCTGACTTATCATGGAGCCATTAAATTGGATGATAAAGATCCACAATTCAAAGACAACGTCATATTGCTGAATAAGCACATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAAAAGACTGATGAAGCT---------------------------------------------------------------------------------------------------------------------------------------------CAGCCTTTACCGCAGAGACAAAAGAAGCAGCCCATTGTGACTCTTCTTCCTGCGGCTGACATGGATGAT---------TTCTCCAGACAACTTCAAAATTCCATGAGTGGAGCTTCTGCTGATTCAACTCAGGCA >Anlong_57_NA_ARI44797_1_2013_China_Bat_Bat_coronavirus ---------------------------------------ATGAGCTCTGTCAAATTTGAG---------------------------------------GCCTCTGGTCGCACTGGCAGAACTCCT---------------------------------------------------------------------------------CTCTCCTATTTTGCCCCTATAACAGTTACCTCTGGGAAAAATCTTTGGAACGTCCTCCCTAAAAATGCAGTCCCATCTGGAAAAGGA---AAGGCCAACCAGCAGGTTGGATACTGGTCCGAACAAACCAGA---TGGAAGATGCAGAAGGGAGAACGGGTTGAGAAGCCTTCTTTCTGGCACTTCTACTTTCTTGGTACCGGCCCTCACGCTGATGCCAAGTTTAGAGAGCGCATCCAAGGTGTGGTGTGGGTTAGCAAAGCGAATGCTGACCTTAAACCG---ACTGACCTTGGAACCAGATCTAAGGCTAGAAGTCTCATTACTCCAAAATTTGACATTGAGTTGCCTGACGATATTGAAATCGTG---GACAAGTCCTCTGCACCAAATTCGCGGGGAAATTCGCGTAGCCAGAGCAGAGGTGCAAAGAGCGGTTCGAAGAGTCGCGGCAACTCCCAGACACGTGACAACTCCAAGTCT---CGTGACAATTCCAATAACAGAGGAAAATCTCAGTCTCGTAATAACTCACGCAGTCGCGGACAGCAGCGTAATAACAACCAGCAACGCCAGGGCTCTGGTAACGCAGGTAATAACACT---GCTGACCTCGCTGCCGCAATTGTGCTGGCCCTTGAAAAAGCTGGTCTTGCAAGAGACACT---------GAGAAGGCTCCTAAAAAGGAGAGTCCTAATAATAATAAAAAACAGAAGTCCAGAGCAAGTTCTCCTGCTCCAGCTCAGTCCAAGAACACAGACCAACTGACTAAGGTCGTGTGGAAACGCATGCCTGACCCCAGTTGCAATGTGAAACAATGCTTT---------GGACCACGCTCTACTTACCAGAACTTCGGCGACGAAGAGGCTGTTGAGAAAGGTGTGCGTGCCAAGCACTACCCATCATGGGCTGAACTGACACCAAACACTGCTGCACTGCTTTTCGGCGGTGAAGTAATGACGGTTGAGGATGGTGAAGATATC------------------GTCATCCAATATACCTATCAGATGAGAGTCCCGAAAACAACTCCGGCTCTCCAGACATTCCTG------------CCACAGGTGAGTGCCTTCGCTAAT---------------GCTAGCGGAGATGACGAATCTGAATCAGGTCAGGAA------------------------------------------------------------------------------------------------------------ATGCCAGTTGTTACAAGTGCTGCCGAAAGTGCTGCACCTGCACCAGCTCCTACACCAAAACTTAATCCCAAAGCCGAGACCTTTGTGCCGCCTAAAGTTGACCCCAACTATTTCGCAGGCATGAAGGTTGAGATCATGAACAAAACTATCTCAGATGACAGTACGGTT >BtCoV92_N_QEH60467_1_2015_Singapore_Bat_Bat_coronavirus ATGTCTGGACGGAATAAGCCCCGTTCTGGCACTTCTACTCCTAAG---GTTACGTTCAAACAAGAATCTGATGGTTCCGAC---TCTGAATCTGAACGTCGCGCTTCTATTCGCCCTAAGAATAAG---------------------GGT------------AGTTCTTTTAAACCAGAAAAGCCTAAAGCTGCTCCTCCTCAGAATGTTTCTTGGTTTGCACCACTAGTCCAGACAGGGAAAAATGATCTT---CGCTTTCCTCGTGGACAAGGTGTGCCTATAAGTCAAGGTGTGGACCCTGTCTACAACCATGGCTATTGGCTCCGAACTCAGCGTTCTTTCCAAAAAGGA---GGGAAACTTGTGCAGGCCAATCCCAGGTGGTATTTTTACTACACTGGTACTGGACGTTATGGTGACATGCGTTATGGCACTAAGAACCCTGATCTAATCTGGGTTGGTGAGGAAGGTGCTAATGTTAACCGTGTTGGTGACATGGGCACGCGTAATCCTAATAATGACGGTGCCATCTCT---------GTTCAGTTACATGATGGC------ATTCCT---AAAGGCTTCTATGCAGAAGGACGTAACTCTCGCAGCAACAGCCGCAATAGT---------------TCACGTAACTCCAGTAGAGCTTCTTCGCAGGGCAACTCACGTGCA---------------------------------------------------------------GGTTCAAGAAATGCCTCTCCTGGCCGTAATGCACCTAATGTTGCTTCAGGTAAT------GAGCCATGGATGGCCTATTTAGTTCAGAAACTGGAAGCACTG---------------------------GAGAACAAAGTCAATGGTCCTAAGGAG---ACTAAGAAACCAGTGCAAGTTACCAAGAATGAGGCTGCAGCTAATGCTAAGAAACTGCGTCAT---------------------AAGAGAACACCACATAAGGGCAGCGGCGTTACAACTAATTATGGTCGCAGAGGTCCTGGTGATCTTGAGGGCAATTTTGGAGACCTAAATATGTTGAAACTTGGAACTGATGATTCCAGGTTTCCTGCTGCTGCGCAAATGGCTCCAAATGTAGCATCTTTTCTTTTCATGTCACATTTTTCAGTTAGAGAAGAAAATGATGCTCTG------------------TGGCTTCACTATAAGGGTGCCATTAAGTTGCCTAAAGATGACCCTAATTATGACCAGTGGACCAAAATCCTGGGTGAAAATCTTAATGCTTATAAGAATTTTCCTCCAGTGGAACCAAAGAAGGACAAAAAGAAGAAGGAAGAAGCCAGT------GTTGAAGTTGCTGTCTATGAGGACGCTGCCACTGGCACAGACCAGCCCATAGTACAGAAAATATGGGTTAAAGATGATGGTGTCCAGACCGATGATGAATGGATCGGTGGTGATGATACTGTCTATGAAGAAGAAGATGACAAACCCAAGGCTCAGAGAAGACACAAGAAGAGGGCCTCCACAGCTTCACGT------GTGACT------------------------------GTAGCAGACCCTACTAATCTTGCTAATGAGAGATCC >BtCoV_Rh_YN2012_Ra13591_N_QBP43296_1_2013_06_01_China_Unknown_Bat_coronavirus ---------------------------------------ATGGCTTCAGTTAGCTTTGAG------------------------------------CAACAGCGTGGCCGTAGTGGTAGGGTTCCT---------------------------------------------------------------------------------CTTTCTTTCTTTTATCCTGTCATTGTGACAGACAACACTCCTTTCTGGAAGGTTATGCCTAATAATGCCGTACCTAATGGCATGGGC---ACGAAGGATGAACGCATTGGTTATTGGAATGAGCAAAAACGC---TGGCGCATGCGCAAAGGACAGAGAATTGATCTGCCATCTAAATGGCACTTCTATTTCCTTGGCACTGGCCCACATAAAGAAGCTTCATTCCGCCAACGCCTTGACGGTGTGTACTGGGTTGCAGTCAATGGAGCTAAAACTCAACCT---ACTTCACTTGGCAGCCGTAAAAAGAGTGCTGCTATGATGGTACCGCAATTCAGTGTGTCGCTTCCTTCAAACATTCAAGTTCAAACCGAGAATGCATCAGCTCCTGCATCTCGTAATCAAAGTCAGAATCGT---------------------TCACAGTCTGCTAATCGTTCGCAGTCACGTGGACCCAACCAAAATGTCAACCAAAACCAG------------------------------AATACCAATGGAAATCAGCGTGCCAGATCGCAATCGCGTAACCGTGGCAGCAATAATAATCAACCTCAGAATCAA---GTTGATATCGTGGCTGCAGTTAAGGCTGCTTTGCAACAGCTTGGAGTTGGAAATCAAAATCAGGGAGGAACTGGTAAGAAGAGCAAGAGCAACTCGGGTGTGAATACGCCTAAGGAGCAACGTGCGAAATCCCCAGCTAAAACTCCACCAGTTCAGCGTAAGCAAATGGAAAGACCCGTTTGGAAGCGGGTGCCCAACTCTTCAGAGAATGTCACTGCTTGTTTC---------GGTCCTCGTGATGCTGTGCATAATTTTGGTGACTCTGATGTTGTACATCATGGCACTGATGCTAAGCATTGGCCGCAGCTTGCTGAGCTCATACCCACTCCTGCTGCTTTAGCTTTTGGCAGTGAAATTTCTACAACAGAGGTTGGTGACAAAGTA------------------GAAATCACCTACACCTACAAAATGAAGGTTGACAAGGCTGACAAGAACCTTCCAGCTTTTCTT------------CAACAAGTGAGCGCTTATGCGCAA---------------CCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACAGGCCAACCAGATCTCGTCTCAATTGAATCCAGTTGCCCCTGTGTTTACTCCAGGCATGGATGAT---------------------TCTGTTGAAATCATAGACCAAGTCTTCGACACTGATGTG------ >BtCoV_Rh_YN2012_Rs3376_N_QBP43263_1_2012_05_19_China_Unknown_Bat_coronavirus ---------------------------------------ATGGCTTCAGTCAGTTTTGAT---------------------------------GACCAACCCAGGGGCCGTGGTGGTAGGATGCCA---------------------------------------------------------------------------------CTTTCATATTATTACCCTATTATGGTTACTGATGGTAAACCCCTTTTCAAGGTGCTGCAAAGTAATGCAGTGCCCACTGGAAAGGGA---ACCAAGGAACAACAAATTGGCTATTGGAACATGCAAGCTCGC---TGGCGCATGGTAAAAGGAGTCCGTAAGGATCTTGATCCCAAATGGCACTTCTATTACCTAGGCACCGGACCACATGCAGACGCACCATTCCGTCAAAGACTTGAAGGTGTTTTCTGGGTGGCTGTCCAGGGCTCTAAAACTGAACCT---ACAGGATTGGGTGTGCGTAAGCGTAACGCCCCACTCCTAAAACCACAATTCAGTTTTAAGCTGCCAGTAAATGTTGAAATTCAAGAAGATTCAGCTTCCCGGCCAAATTCAAGAAATCCCAGCAGTAACCGTGACCGC---------------AGTCAGAGTGGAAATCGCTCTGCTTCTAGTGGTCCAAAACAGGGTAATTCCCAAAACCAA---------AATAATTCCTCCCAGGGAAATAATTCAAACAACCAGCAGCGCTCTAGGAATAATTCAAAGAGCCGAGGCCAAAATAACCAGTCTAACAATTCACAG---GCTGACATTGTTGCTGCTGTAAAACAGGCACTCAAAGAACTTGGAGTGTCCCCCCAGGAGAAG------AAGAATAAACAGAAAGGTTCTACATCTGGTAACAACACACCAAAAGAGCAGCGTTCAAAATCACCTGCTCCAAGTCCAAACACCCAGAGGAAACAAATTGAGCGTCCAGTCTGGAAGCGTGTTCCCACGTCTGCAGAGGATGTTACAGTGTGTTTT---------GGACCACGTGACACCCAGCAAAATTTTGGCGACCAAGATCTCGTCAGACATGGTGTTGATGCTAAACACTACCCCCAGCTAGCAGAATTTGTTCCCGGAACTGCTGCATTGCTCTTTGGAGGCGAAGTTTCCACCAGAGAATCTGGAGAAGATGTA------------------GAAATCACCTTTCACTATAAATTGAAGGTCAAGAAATCTGACAAGAACCTCCCTCTTTTCCTC------------CAACAAGTCAGTGCTTACGCACTA---------------CCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGGCACCTAATATACCTTCTCAATTGAACCCTATTGCCCCAGATTTCACACCTGGTTTTGAAATG------------GTTAATGAGACTGTTGAGATAATAGACCAAGTCTATGACACCCCCGATGCA--- >BtCoV_Rh_YN2012_Rs4125_N_QBP43274_1_2012_09_16_China_Unknown_Bat_coronavirus ---------------------------------------ATGGCTTCAGTCAGCTTTGAT---------------------------------GATCAATCTAGGGGCCGTAGTGGTAGGGTACCA---------------------------------------------------------------------------------CTTTCCTTTTACAACCCTGTTATGGTAACTGATGACAAGCCGCTTTTCAAGGTAATGCCTCATAATGCAGTACCTACTGGAAAGGGC---AACAAAAGTCAACAGATTGGCTATTGGAATATGCAACCCCGC---TGGCGTATGGTTAAAGGTCAGCGTAAGGATCTGACTCCAAAATGGCATTTTTACTATCTTGGAACTGGACCACATGCAGAAGCACCGTTCAGGCAGAAGCTTGATGGTGTCTTCTGGGTTGCAGTCCAGGGTTCAGACACTCAACCT---ACGGGACTTGGTGTGCGTAAGCGTAATCAGCCGCTCATCAAACCGCAGTTCGCTGTGAAATTGCCAGCCAACATTGAGATCCAGGAGGAAAATGCTTCCAAGCCAAATTCCAGGAACCCAAGTACCAACCGTGATCGC---------------AGTCAGAGTGGAAATCGCTCTGCTTCACGTGGTCCACAACAGGGTAATACCCAAAATCAAAATCAGAATAACAATTCTTCCAAGGGAAATCAAAATAACAATCAGCAGCGCTCTCGTAACAATTCAAAGAGCCGAAGCCAAAATAACAGTCAACCACAGAACCAACAGGTTGACATTGTTGCTGCTGTCAAACAAGCACTCAAAGAACTTGGAGTGTCCCCCCAAGAGAAG------AAACAAAAACAGAAAGGTAATACATCTGGTAACAACACACCAAAAGAGCAGCGTGCAAAGTCTCCTGCTCGCAGTCCGTCATCGCCAAGAAAACAACTTGAGCGGCCTGTCTGGAAGCGTGTTCCAACAGAAGCTGAGAATGTTACGCAATGTTTC---------GGTCCACGAGACACACTGCGCAACTTCGGTGACAGGGAATTGACGCTAAGAGGTGTTGAAGCTAAAAACTATCCACAAATCGCTGAATTTGTGCCGACACCTGCTGCATTGCTTTTCGGTGGCGAAGTGTCTACTAGAGAAGCCGGTGAAGATGTA------------------GAAATTACCTTTCATTACAAAATGAAAGTTAAGAAAGATGACAAGAACCTCCCTCTTTTCCTT------------CAACAAGTCAGTGCTTATGCATTG---------------CCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCAAGCACCCAATGTACCTTCTCAACTTAACCCAGTTGCACCAGATTTCACACCAAGTGGAGTGGAA---------ATGGTCAACGAGACTGTTGAGATAATTGATCAGGTCTATGATTCCTTTGATGCA--- >BtCoV_Rh_YN2012_Rs4259_N_QBP43285_1_2013_04_17_China_Unknown_Bat_coronavirus ---------------------------------------ATGGCTTCAGTCAGCTTTGAT---------------------------------GATCAATCTAGGGGCCGTAGTGGTAGGGTACCA---------------------------------------------------------------------------------CTTTCCTTTTACAACCCTGTTATGGTAACTGACGACAAGCCGCTTTTCAAGGTAATGCCTCATAATGCAGTACCTACTGGAAAGGGC---AACAAAAGTCAACAGATTGGCTATTGGAATATGCAACCCCGC---TGGCGTATGGTTAAAGGTCAGCGTAAGGATCTGACTCCAAAATGGCATTTCTACTATCTTGGAACTGGACCACATGCAGAAGCACCGTTCAGGCAGAAGCTTGATGGTGTCTTCTGGGTTGCAGTCCAGGGTTCAGACACTCAACCT---ACGGGACTTGGTGTGCGTAAGCGTAATCAGCCGCTCATCAAACCGCAGTTTGCTGTGAAATTGCCAGCCAACATTGAGATTCAGGAGGAAAATGCTTCCAAGCCAAATTCCAGGAACCCAAGTACCAACCGTGATCGC---------------AGTCAGAGTGGAAATCGCTCTGCTTCACGTGGTCCACAACAGGGTAATACCCAAAATCAAAATCAGAATAACAATTCTTCCAAGGGAAATCAAAATAACAATCAGCAGCGCTCTCGTAACAATTCAAAGAGCCGAAGCCAAAATAACAGTCAACCACAGAACCAACAGGTTGACATTGTTGCTGCTGTCAAACAAGCACTCAAAGAACTTGGAGTGTCTCCCCAAGAGAAG------AAACAAAAACAGAAAGGTAATACATCTGGTAACAACACACCAAAAGAGCAGCGTGCAAAGTCTCCTGCTCGCAGTCCGGCATCGCCAAGAAAACAACTTGAGCGGCCTGTCTGGAAGCGTGTTCCAACAGAAGCTGAGAATGTTACGCAATGTTTC---------GGTCCACGAGACACACTGCGCAACTTCGGTGACAGGGAATTGACGCTAAGAGGTGTTGAAGCTAAAAACTATCCACAAATCGCTGAATTTGTGCCGACACCTGCTGCATTGCTTTTCGGTGGCGAAGTGTCTACTAGAGAAGCCGGTGAAGATGTA------------------GAAATTACCTTTCACTACAAAATGAAAGTTAAGAAAGATGACAAGAACCTCCCTCTTTTCCTT------------CAACAAGTCAGTGCTTATGCATTG---------------CCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCAAGCACCCAATGTACCTTCTCAACTTAACCCAGTTGCACCGGACTTCACACCAAGTGGAGTGGAA---------ATGGTCAACGAGACTGTTGAGATAATCGATCAGGTCTATGATTCCTTTGATGCA--- >CMR66_NA_AWV67059_1_2013_12_Cameroon_Bat_Bat_coronavirus ATGTCTGGAAGGAACAGATCTAGACCTGGTACACCTTCCCCTAAG---GTTACGTTCAAACAAGAATCTGACGGTTCTGAC---TCCGAATCTGATCGCCGTAATGGTAACCGTACTGGTGCCCGTTCTAAGAATAATAATGGTAGAAGT------------AGTGCTCCCAGGCCTGAGAAGCCTAAGGCAGCCCCTCTTCAGAATGTTTCCTGGTTTGCACCATTGGTTCAAACCGGTAAATCTGAACTG---CGTTTCGCTAGAGGTGAAGGAGTGCCCGTGAGTCAAGGTGTTGATCCCACCTATGAACATGGGTACTGGCTACGTACACAGAGGTCTTTCCAGAAAGGT---GGTAAGCAAGTGTTGGCTAACCCCCGCTGGTACTTCTATTATACTGGTACCGGCCGCTTTGGTGACCTTCGTTTTGGTACTAAAAACCCGGACATAGTTTGGGTTGGCCAGGAAGGTGCCAATATCAACCGCCTAGGTGATATGGGCACACGTAACCCCAGTAATGATAGTGCTATACCA---------GTACAGTTAACTGGTGGT------ATACCT---AAGGGTTTCTATGCAGAGGGACGCGGCTCTCGCGGTAATAGCCGCAGCAGT---------------TCACGTAACTCGAGTAGAGCTTCGTCGCGTGGTAATTCACGCGCT---------------------------------------------------------------GGCTCCCGTGGTGCATCACCCGGTAGGCCTGCAGCTACTCCATCCGCT------------GAACCGTGGATGGCTTATCTTGTACAGAAGTTGGAAAAACTG---------------------------GAAAGCCAGGTTAATGGTACCAAGCCAGTTACCAAGAATCCACTTCAGGTGACTAAGAATGAAGCTGCTGCCAATGCTAAGAAGCTCAGGCAC---------------------AAACGCACTGCGCACAAGGGCAGTGGTGTTACTATGAATTACGGCAGACGTGGCCCAGGTGACTTGGAGGGTAATTTTGGGGACCTTGACATGCTCAAGCTTGGTACTGATGATCCCAGGTTTGCTGCCGCTGCGCAAATGGCCCCTAATGTTTCATCTTTTCTGTTCATGTCTCATTTATCCACGAGGGAAGAAGGGGATGCTATG------------------TGGCTCCATTATAAAGGTGCCATAAAGCTTCCTAAAGACGACCCCAACTATGATCAGTGGACTAAGATTTTGGCAGAAAACTTGAATGCCTACAGAGATTTCCCTCCGCCTGCGCCCAAAAAGGACAAAAAGAAGAAGGAAGAGACCACT------CAAGAAACCGTCATCTTTGAAGATGCGTCTACTGGAACAGACCAACCA---GTTGTTAAGGTCTGGGTAAAAGATCAGGACGCACAAACTGATGACGAGTGGCTGGGTGGCGATGAAACCGTTTATGAAGAAGAGGACGACCGTCCAAAGACCCAGAGGAGACACAAGAAGAGAGGATCAACTGCCTCTCGT------GTGACT------------------------------ATTGCGGACCCCACTAATGCAGGTGCCGAAAGGTCT >CMR704_P12_N_YP_009824993_1_2013_12_Cameroon_Bat_Bat_coronavirus ATGTCTGGACGTCGCACACCGCGA---------AACCAGCCACAG---GTTTCTTTTAAGAATGAATCAGAC---TCTGAC---TCCGAGTCTGGAGCGCGTTCCCAATCAAGAGGACGCAATTCCAATAACAATAATAATGGAGGCAATGGTGGTGCCCGTCGTAAGGACAAGCCAGAAAAGCCCAGAGCTGCTCCAGCTCAAAATGTGTCCTGGTTTTTGCCTATAGTGCAAACTGGTAAACAGGATTTA---CGGTTTGCTCGTGGTGAAGGCGTACCTGTTTCTCAGGGCGTTGACATCACTTACCAGCATGGTTACTGGCTTCGCAGGCAGCGCACCTTTAATAAGGGC---GGCAAGCAAGTCCAAGCTAATCCCAGGTGGTTTTTCTACTACACCGGCACTGGTCCTTATGAAGGACTACGTTATGGCAGTAGAAACAACGATATAATCTGGGTCGGCAACGAAGGTGCTAATGTCAACCGCCTTGGTGACATGGGTACACGTAACCCAGCTAATGATGCAGGAATACCA---------GTTCAGCTCGCTGAAGGC------ATCCCT---AAGGGCTTCTACGCGGAGGGCCGCAATTCCAGAGGAAATAGCCGCAACAGC---------------TCTCGCAGTTCCAGCAGGGGCAGTTCTAACGCTAACTCTAGGAAT---------------------------------------------------------------CAGTCTAGATCAAATTCTCCAGGCCGTGGATCAGCACCTCCAAGTGGCGGT---------GAACCATGGATGGCTTATTTGATTCAGAAATTGGAAAACCTT---------------------------GAGCAGCGCGTTGACGGCAAGAAGTCC---GACAAGCAGCCTGTCAAGGTAACCAAGAATGTGGCTTCAGAGAATGCCAAAAAGTTGCGCCAC---------------------AAAAGAACTGCACACAAGGGCAGTAATGCGACGCAGAATTATGGCAGACGCGGACCAGGCAATCTTGAGGGCAATTTTGGCGACCAAGAATTTCTTAAGCTCGGTACAGATGACCCTCGCTTCCCAGTTGTTGCTCAGATGGCTCCTAACACCAGTTCTTTTGTGTTCATGTCGCATTTCACACCTCGTTATGAGGCTGATGCTTTG------------------TGGCTGGATTACACAGGTTCCATCAAGCTGCCTAGGGATGATCCCAACTTTCCCCAATGGGAGAAATTGTTGGCAGAGAACATCGACGCGTACAAGAGCTTCCCACCACCTAAGCCTAAGTCAGACAAGAAGAAGAAGTCTGACAAGTCAGATTCAGCTGCAGGACCGTCAGAGGATCTACAGATGCAAGTCGTAGACCCATCTGGTGTTCAGCGCATCTATATGAAGGATGCTGCTGACCAGACTGACGATGAGTGGCTG---CAGGATGACACCATTTATGAGGATGAGAATGACAAACCGAAGGCTCAGAGACGCCAATCCATCAAGAAGCGCAACGCCACTCATCAGAGACATGTC------------------------------TCAATTGATGGCGCTGCTCAATCATCAGCC------ >CMR705_P13_NA_AWV67075_1_2013_12_Cameroon_Bat_Bat_coronavirus ATGTCTGGACGTCGCACACCGCGA---------AACCAGCCACAG---GTTTCTTTTAAGAATGAATCAGAC---TCTGAC---TCCGAGTCTGGAGCGCGTTCCCAATCAAGAGGACGCAATTCCAATAACAATAATAATGGAGGCAATGGTGGTGCCCGTCGTAAGGACAAGCCAGAAAAGCCCAGAGCTGCTCCAGCTCAAAATGTGTCCTGGTTTTTGCCTATAGTGCAAACTGGTAAACAGGATTTA---CGGTTTGCTCGTGGTGAAGGCGTACCTGTTTCTCAGGGCGTTGACATCACTTACCAGCATGGTTACTGGCTTCGCAGGCAGCGCACCTTTAATAAGGGC---GGCAAGCAAGTCCAAGCTAATCCCAGGTGGTTTTTCTACTACACCGGCACTGGTCCTTATGAAGGACTACGTTATGGCAGTAGAAACAACGATATAATCTGGGTCGGCAACGAAGGTGCTAATGTCAACCGCCTTGGTGACATGGGTACACGTAACCCAGCTAATGATGCAGGAATACCA---------GTTCAGCTCGCTGAAGGC------ATCCCT---AAGGGCTTCTACGCGGAGGGCCGCAATTCCAGAGGAAATAGCCGCAACAGC---------------TCTCGCAGTTCCAGCAGGGGCAGTTCTAACGCTAACTCTAGGAAT---------------------------------------------------------------CAGTCTAGATCAAATTCTCCAGGCCGTGGATCAGCACCTCCAAGTGGCGGT---------GAACCATGGATGGCTTATTTGATTCAGAAATTGGAAAACCTT---------------------------GAGCAGCGCGTTGACGGCAAGAAGTCC---GACAAGCAGCCTGTCAAGGTAACCAAGAATGTGGCTTCAGAGAATGCCAAAAAGTTGCGCCAC---------------------AAAAGAACTGCACACAAGGGCAGTAATGCGACGCAGAATTATGGCAGACGCGGACCAGGCAATCTTGAGGGCAATTTTGGCGACCAAGAATTTCTTAAGCTCGGTACAGATGACCCTCGCTTCCCAGTTGTTGCTCAGATGGCTCCTAACACCAGTTCTTTTGTGTTCATGTCGCATTTCACACCTCGTTATGAGGCTGATGCTTTG------------------TGGCTGGATTACACAGGTTCCATCAAGCTGCCTAGGGATGATCCCAACTTTCCCCAATGGGAGAAATTGTTGGCAGAGAACATCGACGCGTACAAGAGCTTCCCACCACCTAAGCCTAAGTCAGACAAGAAGAAGAAGTCTGACAAGTCAGATTCAGCTGCAGGACCGTCAGAGGATCTACAGATGCAAGTCGTAGACCCATCTGGTGTTCAGCGCATCTATATGAAGGATGCTGCTGACCAGACTGACGATGAGTGGCTG---CAGGATGACACCATTTATGAGGATGAGAATGACAAACCGAAGGCTCAGAGACGCCAATCCATCAAGAAGCGCAACGCCACTCATCAGAGACATGTC------------------------------TCAATTGATGGCGCTGCTCAATCATCAGCC------ >CMR900_NA_AWV67051_1_2013_12_Cameroon_Bat_Bat_coronavirus ATGTCTGGACGTCGCACACCGCGA---------AACCAGCCACAG---GTTTCTTTTAAGAATGAATCAGAC---TCTGAC---TCCGAGTCCGGACAGCGTTCTCAATCAAGAGGACGCAATCCCAATAATAATAATAATGGAGGCAATGGTGGTGCTCGTCGTAAGGATAAGCCAGAAAAGCCCAGAGCTGCTCCCCAGCAGAACGTGTCCTGGTTTCTGCCATTAGTTCAGACTGGAAAGAATGACCTG---CGTTTTCCTCGCGGTCAAGGTGTTCCCATCACTCAAGGTGTGGACCCAACTTTCCAGCATGGTTATTGGCTTTTCCGTCAACGTTCCTTCCAGAAGGGC---GGAAAACAGGTAATGGCTAACCCCAGATGGTACTTTTACTATACCGGTACAGGTCCTTATGAAGGGCTTCGTTATGGCAGTAAGAGTAATGATTTAATCTGGGTTGGCAATGAAGGGGCTAATGTCAACCGCATTGGTGACATGGGCACTCGCAACCCAGCTAATGATGCAGGTCTTGTC---------GTTCAGCTCGCTGATGGC------ATTCCT---AAGGGCTTCTATGCAGAAGGCCGCAATTCCAGAGGGAATAGCCGTAACAGC---------------TCTCGCAGTTCCAGCAGGGGCAGTTCTAATGCTAACTCTAGGAAT---------------------------------------------------------------CAGTCTAGATCAAATTCTCCAGGCCGTGGATCAGCACCTCCTAGTGGCAGT---------GAACCCTGGATGGCTTATTTGATTCAGAAATTGGAAAACCTT---------------------------GAGCAGCGCGTTGACGGCAAGAAGTCC---GACAAGCAGCCTGTCAAGGTAACCAAGAATGTGGCTTCAGAGAATGCCAAAAAGTTGCGTCAC---------------------AAAAGAACTGCGCATAAGGGCAGTAATGTGACTCAAAATTATGGCAGACGCGGACCAGGCAACCTCGAGGGCAATTTTGGTGATCAGGATTTTCTCAAGCTTGGCACAGATGATCCTCGCTTCCCAGTAGTAGCACAGATGGCTCCTAATACCAGTTCTTTTGTGTTTATGTCCCAATTCACGCCTCGTTACGAGAGCGATGCATTG------------------TGGCTCGATTACACAGGTTCCATCAAGCTGCCGCGAGATGATCCCAATTTTCCCCAATGGGAAAAGTTGCTAGCAGAGAATCTTGACGCTTACAAGAGTTTTCCACCACCTAAGCCTAAGTCAGACAAGAAGAAGAAGTCTGACAAGTCAGATTCAGCCACTGGCCCATCAGCTGATCTACAGATGCAAGTCGTAGATCCTTCTGGTGTTCAGCGCATCTACATGAAGGATGCTGCCGACCAGACCGATGATGAATGGCTG---CAGGATGACACCATTTATGAGGATGAGAATGACAAGCCTAAGGCTCAGAGACGCCAATCCATCAAGAAGAGAAATGCTCAGCGTCATGTT------------------------------------TCTATTGATGGATCTGCGCAGTCAAGTGCA------ >JPDB144_N_ANA96046_1_2012_12_China_Bat_Bat_coronavirus ---------------------ATGGCAACTCCTGCTGCACCTCGCACCATTAGTTTTGCT---------GATAATAATGAC---AACCAAACCAATCAGCAGCAGCGTGGACGCGGAAGAAACCCT------------------------------------------------------AAGCCACGACCTGCTCCCAATAACACTGTCTCCTGGTACACAGGGCTCACCCAACACGGTAAAAACCCTCTT---GCCTTCCCTCCTGGGCAGGGTGTACCTCTTAATGCCAATTCTACAACAGCCCAAAATGCTGGCTATTGGCGGAGACAAGACCGGAAAATCAATACCGGTAATGGTGTCAAA---CAATTATCTCCCAGATGGTTCTTCTACTATACAGGAACCGGACCAGAGGCTAATTTACCTTTCAGATCCGTCAAGGATGGTATCGTCTGGGTCTATGAAGAGGGTGCCACAGATGCTCCT---TCAGTCTTTGGGACACGCAACCCTGCAAATGATGCAGCTATCGTT---------TGTCAGTTTGCGCCAGGTACTCTTATTCCT---AAAAACTTCCACATTGAAGGGACTGGGGGTAATAGTCAATCATCTTCAAGA---------------GCATCCTCCAACAGTAGGAACTCTTCTAGATCCAATTCCAGAGGA------------------------------------------------GGACGAAGCACATCTAACTCCAGAGGGACTTCCCCAGTTTCACATGGAGTCGGAAGTGCAGAATCCTTAGCTGCTCTGCCACTTCTTCTAGACTTGCAGAAGCGTTTAGCTGATCTT------------------------------------GAGTCTGGAAAG---------TCAAAGCAGCCTAAAGTTGTCACTAAGAAAGACGCTTCAGCTGCAAAAAACAAAATGCGCCAT---------------------AAGCGCGTTGCCACCAAAAATTTCAATGTAACTCAAGCCTTTGGTCTGCGTGGACCAGGCCCGTTACAGGGAAATTTTGGTGACATGAACTATAACAAGTTTGGTACAGAGGACCCACGTTGGCCTCAGATGGCTGAACTTGCTCCCTCAGCTTCAGCTTTCATGAGTATGTCTCAATTTAAGCTTACTCATCAAAGCAATGATGACAAAGGTGAACCTATTTACTTTTTGTCATATTCTGGAGCAATTAAACTAGACCCTAAGAACCCCAACTACAAAAAGTGGCTGGAGCTTCTTGAGGCAAATATTGATGCTTACAAAACCTTC------------CCCAAGAAGGAGCGTAAGCCTAAAACTACAGAAGAT---------------------------------------------------------------------------------------------------GGAGCTTCTGCTTCATCCTCAGCTAGTCAAATGGAGGATGTTGATGCTAAACCTCAGCGAAAGCCTAAAAGCCGAGTAGCAGGTAGCATCACTATGCGTTCTGGAAGCTCA------------------------CCAGCTCTTCAGGATGTAAACTTCGATTCAGAGGCT------ >JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus ---ATGTCTGATAATGGAACCCAAAACCAACGTAGTGCCTCCCGC---ATTACATTTGGTGGACCTTCAGATTCAACTGACAATAACCAGGATGGAGGACGCAGTGGTGCACGGCCAAAACAACGC------------------------------------------------------CGACCCCAGGGTTTACCCAATAATACCGCGTCTTGGTTCACAGCTCTCACTCAGCATGGTAAGGAAGGACTC---AAATTCCCTCAAGGCCAGGGAGTTCCTATCAACACCAATAGTGGCACAGATGACCAAATTGGCTACTATAGAAGAGCTACCCGACGAGTTCGTGGTGGTGACGGTAAAATGAAAGAGCTTAGCCCCAGATGGTACTTCTATTACCTAGGAACTGGCCCAGAAGCTTCACTTCCCTATGGTGCCAATAAAGAGGGCATCGTATGGGTTGCAACTGAGGGTGCCTTGAACACACCAAAAGATCATATTGGCACCCGCAATCCTAATAACAATGCTGCCATTGTT---------CTACAACTTCCTCAAGGAACAACATTGCCA---AAAGGCTTCTACGCTGAAGGGAGCAGGAGTGGTAGTCAAGCCTCTTCTCGC---------------TCCTCATCACGTAGTCGTGGAAATTCAAGAACTTCAACTCCTGGC---------------------------------------------------------------AGCAGTAGGGGAAATTCTCCTGCTCGAGTGGCTAGCGGAGGTGGTGAA------------ACTGCCCTCGCGCTATTGCTGTTAGACAGATTGAACCAGCTG---------------------------GAGAGCAAAGTTTCTGGTAAAGGCCAA---CAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTTCAGAGGCATCTAAAAAGCCTCGGCAA---------------------AAACGTACCGCAACCAAACAGTACAATGTCACCCAAGCTTTTGGGCGACGTGGTCCAGATCAAACTCAAGGAAACTTTGGAGACCAGGAGCTAATCAGACAAGGAACTGATTATAAACACTGGCCGCAAATAGCACAGTTTGCTCCAAGTGCCTCTGCATTCTTCGGAATGTCACGCATTGGCATGGAAGTCACACCTTCGGGAACA------------------TGGCTGACTTATCATGGAGCCATTAAATTGGATGATAAAGATCCCCAATTCAAAGACAACGTCATACTGCTGAATAAGCACATTGACGCATACAAGACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAAAAGACTGATGAAGCT---------------------------------------------------------------------------------------------------------------------------------------------CAGCCTTTGCCGCAGAGA---AAGAAACAGCCCACTGTGACTCTTCTGCCTGCGGCTGATATGGATGAT---------TTCTCCAGACAACTTCAAAATTCCATGAGTGGAGCTTCTGCTGATTCAACTCAGGCA >Jiyuan_84_NA_ARI44812_1_2012_China_Bat_Bat_coronavirus ---ATGTCTGATAATGGACCCCAAAACCAACGTAGTGCCCCCCGC---ATTACATTTGGTGGACCCTCAGATTCAACTGACAATAACCAGGATGGAGGACGCAGTGGTGTACGGCCAAAACAACGC------------------------------------------------------CGACCCCAGGGTTTACCCAATAATACTGCGTCTTGGTTCACAGCTCTCACTCAGCATGGTAAGGAAGGACTC---AAATTCCCTCAAGGCCAGGGAGTTCCTATCAACACCAATAGTGGCAGAGACGACCAAATTGGCTACTACAGAAGAGCTACCCGACGAGTTCGTGGTGGTGACGGTAAAATGAAAGAGCTCAGCCCCAGATGGTACTTTTATTACCTAGGAACTGGCCCAGAAGCTTCACTTCCCTATGGTGCCAATAAAGAAGGCATCGTATGGGTTGCAACTGAGGGTGCCTTGAACACACCAAAAGATCATATTGGCACCCGCAATCCTAATAACAATGCTGCTATTGTG---------CTACAACTTCCTCAAGGAACAACATTGCCA---AAAGGCTTCTACGCAGAAGGGAGCAGGAATGGTAGTCAAGCCTCTTCTCGC---------------TCCTCATCACGTAGTCGTGGAAATTCAAGAACTTCAACTCCTGGC---------------------------------------------------------------AGCAGTAGGGGAAATTCTCCTGCTCGAGTGGCTAGCGGAGGTGGTGAA------------ACTGCCCTCGCGCTATTGCTGTTAGACAGATTGAACCAGCTG---------------------------GAGAGCAAAGTTTCTGGTAAAGGCCAA---CAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTTCAGAGGCATCTAAAAAGCCTCGACAA---------------------AAACGTACTGCAACCAAACAGTATAATGTCACCCAAGCTTTTGGGCGACGTGGTCCAGATCAAACTCAAGGAAACTTTGGAGACCAGGAGTTAATCAGACAAGGAACTGATTATAAACACTGGCCGCAAATAGCACAGTTTGCTCCAAGTGCCTCTGCATTCTTCGGAATGTCACGCATTGGCATGGAAGTCACACCTTCGGGAACA------------------TGGCTGACTTACCATGGAGCCATTAAATTGGATGACAAAGATCCCCAATTCAAAGACAACGTCATACTGTTGAATAAGCACATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAAAAGACTGATGAAGCT---------------------------------------------------------------------------------------------------------------------------------------------CAGCCTTTACCGCAGAGACAAAAGAAACAGCCCACTGTGACTCTTCTTCCTGCGGCCGACATGGATGAT---------TTCTCCAGACAACTTCAAAATTCCATGAGTGGAGCTTCTGCTGATTCAACTCAGGCA >PREDICT_PDF_2180_N_ARJ34233_1_2013_02_20_Uganda_Bat_Bat_coronavirus ---------------------ATGGCCACTCCCGCTGCACCTCGTGCCGTGTCTTTTGCC---------GATAACAATGAC---AACTCCAATAATAACCAGTCTCGAGGAAGAGGAAGAAACCCT------------------------------------------------------AAACCTCGACCTGCACCAAATAACACTGTCTCCTGGTACACGGGGCTTACCCAACACGGGAAAGTCTCTCTT---TCCTTCCCACCTGGACAGGGCGTACCTCTTAATGCCAATTCTACCCCTGCGCAAAATGCTGGGTATTGGCGGAGACAGGACAGAAAAATTAATACAGGAAATGGAACCAAG---TCACTGGCTCCCAGGTGGTACTTCTACTACACTGGAACCGGACCTGAGGCCAACCTCCCTTTCCGAGCTGTCAAGGACGGAATCATCTGGGTCCATGAGGATGGCGCCACTGATGCTCCT---TCAACTTTTGGGACGCGGAACCCTAACAATGATGCTGCTATTGTT---------ACGCAATTCGCGCCCGGTACTAAGCTTCCT---AAAAACTTCCACATTGAAGGGACTGGAGGCAATAGCCAATCATCTTCAAGA---------------GCGTCTAGTGCCAGCAGAAACTCTTCTAGATCCAATTCCCGAGGT------------------------------------------------TCCAGATCTGGTAACTCCTCCCGCGGCACTTCCCCAGGTCCATCTGGAGTCGGAGCTGTAGGTGGA---------GAAATGCTGTACCTCGATTTGCTTAACAGATTACAGGCTCTG------------------------------------GAATCTGGCAAAACAAAG---CAAGCACAGCCTAAAGTAATAACTAAAAAGGATGCTGTTGCTGCTAAAAACAAGATGCGCCAT---------------------AAGCGTGTCGCCACCAAGGGTTTCAACATGGTGCAAGCTTTCGGTCTGCGTGGCCCAGGCGACCTCCAGGGAAACTTTGGTGATCTCCAACTTAACAAACTTGGCACTGAGGACCCTCGCTGGCCCCAAATTGCTGAGCTTGCCCCATCAGCCAGTGCTTTCATTGGTATGTCTCAATTTAAACTTACCCATCAGAGCAATGATACTGATGGTGCCCCTGTATACTTTCTTCGATACAGTGGTGCCATAAAACTTGACCCAAAGAACCCTAACTACAATAAGTGGTTGGAGCTCATTGAGCAGAATGTTGATGCCTACAAAACTTTC------------CCTAAAAAGGAGAAGAAACAAAAGGCACCTAAAGAA---------------------------------------------------------------------------------------------------------------------------------GAACCATCTGACCAGATGAATGTGCAGCCGCCTAAGGAGCAGCGTGTGCAGGGTAGTATTACCCAGCGCTCCCGCACTCCT---------------------AGGCCTAGTGTGCAGCCTGGTCCTATGACTGATGTTAACACTGAT >Vs_CoV_1_N_BBJ36015_1_NA_Japan_Bat_Bat_coronavirus ---------------------ATGGCCACCCCTGCAGCGCCCCGTGCTGTGACCTTTGGT---------GACAACAATGACAACAATACCAACACTCAGCAGTCTAGAGGCCGAGGAAGAACTCCT------------------------------------------------------AAGCCTAGACCAGCTCCCAATAACACCGTCTCCTGGTACACTGGCCTTACCCAACACGGGAAGGTCCCTCTT---TCCTTTCCACCTGGACAGGGCGTACCTCTTAATGCCAATTCAACCCCTGCACAAAATGCTGGGTATTGGCGGAGACAGGACCGAAAGATTAATACAGGAAATGGAACAAAG---CAGCTGGCTCCCAGGTGGTTCTTCTACTACACTGGAACCGGGCCTGAAGCTAACCTCCCTTTCAGAGCTGTCAAGGATGGAATCGTCTGGGTACACGAAGAAGGTGCTACAGACGCTCCC---TCCACTTTTGGGACGCGTAACCCTAACAACGATGCGGCTATTGTT---------ACACAGTTCGCTCCAGGTACTAAGCTTCCT---AAAAACTTCCACATTGAGGGCACTGGAGGCAACAGTCAGTCATCTTCAAGA---------------GCATCTAGCGCCAGCAGAGGCTCTTCAAGATCTAGCTCAAGAGGT------------------------------------------------GCTCGTTCCGGAAACTCATCCAGAAGTGCTTCCCCAGGTCCAGCTGGAATCGGAGCTGTAGGTGGCGACGCTTCCAGTATTCTCTACCTGAGTTTGCTGAAGAGGCTCGAAGACCTT------------------------------------GAGGCCGGTAAATCT------AAATCAGCACCTAAGGTTGTTACCAAGAAGGATGCTGCTGCTGCTAAAAACAAGATGCGCCAC---------------------AAGCGCGTCGCCACCAAAAGTTTCAACATGGTTCAGGCGTTTGGACGTCGGGGACCAGGCGACCTCCAGGGAAACTTTGGTGACCTACAGTTGAACAAGCTCGGCACAGAAGACCCCCGCTGGCCTCAGATTGCTGAACTCGCTCCCTCAGCCAGCGCTTTCATGGGTATGTCTCAGTTTAAACTAACCCACCAAAGCAATGATGCTGATGGTTCCCCCGTGTACTTTCTTAGATACAGTGGAGCCATAAAACTTGATCCCAAGAACCCCAACTACCAGAAGTGGATGGAGCTGCTTGAGGCAAACATTGATGCCTACAAATCTTTC------------CCAGTTAAGGAGAAGAAACAAAAGGCTGATGATAAC---------------------------------------------------------------------------------------AAACAGGATTCCACTGAAGACAGTGGTGACCTCTTTGCCGAAGTCGTTGCTTCTGCAATGGCCTCACAATCCCAACCACAGCGAGCGCCTAAGGGTTCTATTACCCAGCGCTCTCGTGCTCCC---------------AGAGCTCCTGTGAGTCAGATGGAAGACGTGAATCAGACCGATGATCGTCAG
>16BO133_N_ASO66816_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus -MSDNGTQNQRSASR-ITFGGPSDSTDNNQDGGRSGARPKQR------------------RPQGLPNNTASWFTALTQHGKEGL-KFPQGQGVPINTNSGRDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVAIEGALNTPKDHIGTRNPNNNAAIV---LQLPQGTTLP-KGFYAEGSRSGSQASSR-----SSSRSRGNSRTSTPG---------------------SSRGNSPARVASGGGE----TALALLLLDRLNQL---------ESKVSGKGQ-QQQGQTVTKKSASEASKKPRQ-------KRTATKQYNVTQAFGRRGPDQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGT------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----------------------------------------------QPLPQR-KKLPTVTLLPAADMDD---FSRQLQNSMSGASADSTQA >Anlong_103_NA_ARI44802_1_2013_China_Bat_Bat_coronavirus MSDNGPQPSQRSAPR-ITFGGPTDSIDNNQNGGRNGARPKQR------------------RPQGLPNNTASWFTALTQHGKEEL-RFSRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATV---LQLPQGTTLP-KGFYAEGSRGGSQASSR-----SSSRSRGNSRNSTPG---------------------SSRGNSPARMASGGGE----TALALLLLDRLNQL---------ESKVSGKG--QQQGQTVTKKSAAEASKKPRQ-------KRTATKQYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGT------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----------------------------------------------QPLPQRQKKQPIVTLLPAADMDD---FSRQLQNSMSGASADSTQA >Anlong_43_NA_ARI44792_1_2013_China_Bat_Bat_coronavirus -------------MSSVKFE-------------ASGRTGRTP---------------------------LSYFAPITVTSGKNLWNVLPKNAVPSGKG-KANQQVGYWSEQTR-WKMQKGERVEKPSFWHFYFLGTGPHADAKFRERIQGVVWVSKANADLKP-TDLGTRSKARSLIIPKFDIELPDDIEIV-DKSSAPNSRGNSRSQSRGAKSGSKSRGNSQTRDNSKS-RDNSNNRGKSQSRNNSRSRGQQRNNNQQRQGSGNAGNNT-ADLAAAIVLALEKAGLARDT---EKAPKKESPNNNKKQKSRASSPAPAQSKNTDQLTKVVWKRVPDPSCNVKQCF---GPRSTYQNFGDEDAVEKGVRAKHYPSWAELTPTTAALLFGGEVMTVEDGEDI------VIQYTYQMRVPKTTPALQTFL----PQVSAFAN-----SGGDDASESGQD------------------------------------MPVVTSAAESAAPAPASTPKLNPRAETFVPPKVDPNYFAGMKVEIMNKTISDDSTV >Anlong_112_NA_ARI44807_1_2013_China_Bat_Bat_coronavirus MSDNGPQPSQRSAPR-ITFGGPTDSIDNNQNGGRNGARPKQR------------------RPQGLPNNTASWFTALTQHGKEEL-RFSRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATV---LQLPQGTTLP-KGFYAEGSRGGSQASSR-----SSSRSRGNSRNSTPG---------------------SSRGNSPARMAIGGGE----TALALLLLDRLNQL---------ESKVSGKG--QQQGQTVTKKSAAEASKKPRQ-------KRTATKQYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGT------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----------------------------------------------QPLPQRQKKQPIVTLLPAADMDD---FSRQLQNSMSGASADSTQA >Anlong_57_NA_ARI44797_1_2013_China_Bat_Bat_coronavirus -------------MSSVKFE-------------ASGRTGRTP---------------------------LSYFAPITVTSGKNLWNVLPKNAVPSGKG-KANQQVGYWSEQTR-WKMQKGERVEKPSFWHFYFLGTGPHADAKFRERIQGVVWVSKANADLKP-TDLGTRSKARSLITPKFDIELPDDIEIV-DKSSAPNSRGNSRSQSRGAKSGSKSRGNSQTRDNSKS-RDNSNNRGKSQSRNNSRSRGQQRNNNQQRQGSGNAGNNT-ADLAAAIVLALEKAGLARDT---EKAPKKESPNNNKKQKSRASSPAPAQSKNTDQLTKVVWKRMPDPSCNVKQCF---GPRSTYQNFGDEEAVEKGVRAKHYPSWAELTPNTAALLFGGEVMTVEDGEDI------VIQYTYQMRVPKTTPALQTFL----PQVSAFAN-----ASGDDESESGQE------------------------------------MPVVTSAAESAAPAPAPTPKLNPKAETFVPPKVDPNYFAGMKVEIMNKTISDDSTV >BtCoV92_N_QEH60467_1_2015_Singapore_Bat_Bat_coronavirus MSGRNKPRSGTSTPK-VTFKQESDGSD-SESERRASIRPKNK-------G----SSFKPEKPKAAPPQNVSWFAPLVQTGKNDL-RFPRGQGVPISQGVDPVYNHGYWLRTQRSFQKG-GKLVQANPRWYFYYTGTGRYGDMRYGTKNPDLIWVGEEGANVNRVGDMGTRNPNNDGAIS---VQLHDG--IP-KGFYAEGRNSRSNSRNS-----SRNSSRASSQGNSRA---------------------GSRNASPGRNAPNVASGN--EPWMAYLVQKLEAL---------ENKVNGPKE-TKKPVQVTKNEAAANAKKLRH-------KRTPHKGSGVTTNYGRRGPGDLEGNFGDLNMLKLGTDDSRFPAAAQMAPNVASFLFMSHFSVREENDAL------WLHYKGAIKLPKDDPNYDQWTKILGENLNAYKNFPPVEPKKDKKKKEEAS--VEVAVYEDAATGTDQPIVQKIWVKDDGVQTDDEWIGGDDTVYEEEDDKPKAQRRHKKRASTASR--VT----------VADPTNLANERS >BtCoV_Rh_YN2012_Ra13591_N_QBP43296_1_2013_06_01_China_Unknown_Bat_coronavirus -------------MASVSFE------------QQRGRSGRVP---------------------------LSFFYPVIVTDNTPFWKVMPNNAVPNGMG-TKDERIGYWNEQKR-WRMRKGQRIDLPSKWHFYFLGTGPHKEASFRQRLDGVYWVAVNGAKTQP-TSLGSRKKSAAMMVPQFSVSLPSNIQVQTENASAPASRNQSQNR-------SQSANRSQSRGPNQNVNQNQ----------NTNGNQRARSQSRNRGSNNNQPQNQ-VDIVAAVKAALQQLGVGNQNQGGTGKKSKSNSGVNTPKEQRAKSPAKTPPVQRKQMERPVWKRVPNSSENVTACF---GPRDAVHNFGDSDVVHHGTDAKHWPQLAELIPTPAALAFGSEISTTEVGDKV------EITYTYKMKVDKADKNLPAFL----QQVSAYAQ-----P----------------------------------------------------------SQANQISSQLNPVAPVFTPGMDD-------SVEIIDQVFDTDV-- >BtCoV_Rh_YN2012_Rs3376_N_QBP43263_1_2012_05_19_China_Unknown_Bat_coronavirus -------------MASVSFD-----------DQPRGRGGRMP---------------------------LSYYYPIMVTDGKPLFKVLQSNAVPTGKG-TKEQQIGYWNMQAR-WRMVKGVRKDLDPKWHFYYLGTGPHADAPFRQRLEGVFWVAVQGSKTEP-TGLGVRKRNAPLLKPQFSFKLPVNVEIQEDSASRPNSRNPSSNRDR-----SQSGNRSASSGPKQGNSQNQ---NNSSQGNNSNNQQRSRNNSKSRGQNNQSNNSQ-ADIVAAVKQALKELGVSPQEK--KNKQKGSTSGNNTPKEQRSKSPAPSPNTQRKQIERPVWKRVPTSAEDVTVCF---GPRDTQQNFGDQDLVRHGVDAKHYPQLAEFVPGTAALLFGGEVSTRESGEDV------EITFHYKLKVKKSDKNLPLFL----QQVSAYAL-----P----------------------------------------------------------SQAPNIPSQLNPIAPDFTPGFEM----VNETVEIIDQVYDTPDA- >BtCoV_Rh_YN2012_Rs4125_N_QBP43274_1_2012_09_16_China_Unknown_Bat_coronavirus -------------MASVSFD-----------DQSRGRSGRVP---------------------------LSFYNPVMVTDDKPLFKVMPHNAVPTGKG-NKSQQIGYWNMQPR-WRMVKGQRKDLTPKWHFYYLGTGPHAEAPFRQKLDGVFWVAVQGSDTQP-TGLGVRKRNQPLIKPQFAVKLPANIEIQEENASKPNSRNPSTNRDR-----SQSGNRSASRGPQQGNTQNQNQNNNSSKGNQNNNQQRSRNNSKSRSQNNSQPQNQQVDIVAAVKQALKELGVSPQEK--KQKQKGNTSGNNTPKEQRAKSPARSPSSPRKQLERPVWKRVPTEAENVTQCF---GPRDTLRNFGDRELTLRGVEAKNYPQIAEFVPTPAALLFGGEVSTREAGEDV------EITFHYKMKVKKDDKNLPLFL----QQVSAYAL-----P----------------------------------------------------------SQAPNVPSQLNPVAPDFTPSGVE---MVNETVEIIDQVYDSFDA- >BtCoV_Rh_YN2012_Rs4259_N_QBP43285_1_2013_04_17_China_Unknown_Bat_coronavirus -------------MASVSFD-----------DQSRGRSGRVP---------------------------LSFYNPVMVTDDKPLFKVMPHNAVPTGKG-NKSQQIGYWNMQPR-WRMVKGQRKDLTPKWHFYYLGTGPHAEAPFRQKLDGVFWVAVQGSDTQP-TGLGVRKRNQPLIKPQFAVKLPANIEIQEENASKPNSRNPSTNRDR-----SQSGNRSASRGPQQGNTQNQNQNNNSSKGNQNNNQQRSRNNSKSRSQNNSQPQNQQVDIVAAVKQALKELGVSPQEK--KQKQKGNTSGNNTPKEQRAKSPARSPASPRKQLERPVWKRVPTEAENVTQCF---GPRDTLRNFGDRELTLRGVEAKNYPQIAEFVPTPAALLFGGEVSTREAGEDV------EITFHYKMKVKKDDKNLPLFL----QQVSAYAL-----P----------------------------------------------------------SQAPNVPSQLNPVAPDFTPSGVE---MVNETVEIIDQVYDSFDA- >CMR66_NA_AWV67059_1_2013_12_Cameroon_Bat_Bat_coronavirus MSGRNRSRPGTPSPK-VTFKQESDGSD-SESDRRNGNRTGARSKNNNGRS----SAPRPEKPKAAPLQNVSWFAPLVQTGKSEL-RFARGEGVPVSQGVDPTYEHGYWLRTQRSFQKG-GKQVLANPRWYFYYTGTGRFGDLRFGTKNPDIVWVGQEGANINRLGDMGTRNPSNDSAIP---VQLTGG--IP-KGFYAEGRGSRGNSRSS-----SRNSSRASSRGNSRA---------------------GSRGASPGRPAATPSA----EPWMAYLVQKLEKL---------ESQVNGTKPVTKNPLQVTKNEAAANAKKLRH-------KRTAHKGSGVTMNYGRRGPGDLEGNFGDLDMLKLGTDDPRFAAAAQMAPNVSSFLFMSHLSTREEGDAM------WLHYKGAIKLPKDDPNYDQWTKILAENLNAYRDFPPPAPKKDKKKKEETT--QETVIFEDASTGTDQP-VVKVWVKDQDAQTDDEWLGGDETVYEEEDDRPKTQRRHKKRGSTASR--VT----------IADPTNAGAERS >CMR704_P12_N_YP_009824993_1_2013_12_Cameroon_Bat_Bat_coronavirus MSGRRTPR---NQPQ-VSFKNESD-SD-SESGARSQSRGRNSNNNNNGGNGGARRKDKPEKPRAAPAQNVSWFLPIVQTGKQDL-RFARGEGVPVSQGVDITYQHGYWLRRQRTFNKG-GKQVQANPRWFFYYTGTGPYEGLRYGSRNNDIIWVGNEGANVNRLGDMGTRNPANDAGIP---VQLAEG--IP-KGFYAEGRNSRGNSRNS-----SRSSSRGSSNANSRN---------------------QSRSNSPGRGSAPPSGG---EPWMAYLIQKLENL---------EQRVDGKKS-DKQPVKVTKNVASENAKKLRH-------KRTAHKGSNATQNYGRRGPGNLEGNFGDQEFLKLGTDDPRFPVVAQMAPNTSSFVFMSHFTPRYEADAL------WLDYTGSIKLPRDDPNFPQWEKLLAENIDAYKSFPPPKPKSDKKKKSDKSDSAAGPSEDLQMQVVDPSGVQRIYMKDAADQTDDEWL-QDDTIYEDENDKPKAQRRQSIKKRNATHQRHV----------SIDGAAQSSA-- >CMR705_P13_NA_AWV67075_1_2013_12_Cameroon_Bat_Bat_coronavirus MSGRRTPR---NQPQ-VSFKNESD-SD-SESGARSQSRGRNSNNNNNGGNGGARRKDKPEKPRAAPAQNVSWFLPIVQTGKQDL-RFARGEGVPVSQGVDITYQHGYWLRRQRTFNKG-GKQVQANPRWFFYYTGTGPYEGLRYGSRNNDIIWVGNEGANVNRLGDMGTRNPANDAGIP---VQLAEG--IP-KGFYAEGRNSRGNSRNS-----SRSSSRGSSNANSRN---------------------QSRSNSPGRGSAPPSGG---EPWMAYLIQKLENL---------EQRVDGKKS-DKQPVKVTKNVASENAKKLRH-------KRTAHKGSNATQNYGRRGPGNLEGNFGDQEFLKLGTDDPRFPVVAQMAPNTSSFVFMSHFTPRYEADAL------WLDYTGSIKLPRDDPNFPQWEKLLAENIDAYKSFPPPKPKSDKKKKSDKSDSAAGPSEDLQMQVVDPSGVQRIYMKDAADQTDDEWL-QDDTIYEDENDKPKAQRRQSIKKRNATHQRHV----------SIDGAAQSSA-- >CMR900_NA_AWV67051_1_2013_12_Cameroon_Bat_Bat_coronavirus MSGRRTPR---NQPQ-VSFKNESD-SD-SESGQRSQSRGRNPNNNNNGGNGGARRKDKPEKPRAAPQQNVSWFLPLVQTGKNDL-RFPRGQGVPITQGVDPTFQHGYWLFRQRSFQKG-GKQVMANPRWYFYYTGTGPYEGLRYGSKSNDLIWVGNEGANVNRIGDMGTRNPANDAGLV---VQLADG--IP-KGFYAEGRNSRGNSRNS-----SRSSSRGSSNANSRN---------------------QSRSNSPGRGSAPPSGS---EPWMAYLIQKLENL---------EQRVDGKKS-DKQPVKVTKNVASENAKKLRH-------KRTAHKGSNVTQNYGRRGPGNLEGNFGDQDFLKLGTDDPRFPVVAQMAPNTSSFVFMSQFTPRYESDAL------WLDYTGSIKLPRDDPNFPQWEKLLAENLDAYKSFPPPKPKSDKKKKSDKSDSATGPSADLQMQVVDPSGVQRIYMKDAADQTDDEWL-QDDTIYEDENDKPKAQRRQSIKKRNAQRHV------------SIDGSAQSSA-- >JPDB144_N_ANA96046_1_2012_12_China_Bat_Bat_coronavirus -------MATPAAPRTISFA---DNND-NQTNQQQRGRGRNP------------------KPRPAPNNTVSWYTGLTQHGKNPL-AFPPGQGVPLNANSTTAQNAGYWRRQDRKINTGNGVK-QLSPRWFFYYTGTGPEANLPFRSVKDGIVWVYEEGATDAP-SVFGTRNPANDAAIV---CQFAPGTLIP-KNFHIEGTGGNSQSSSR-----ASSNSRNSSRSNSRG----------------GRSTSNSRGTSPVSHGVGSAESLAALPLLLDLQKRLADL------------ESGK---SKQPKVVTKKDASAAKNKMRH-------KRVATKNFNVTQAFGLRGPGPLQGNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLTHQSNDDKGEPIYFLSYSGAIKLDPKNPNYKKWLELLEANIDAYKTF----PKKERKPKTTED---------------------------------GASASSSASQMEDVDAKPQRKPKSRVAGSITMRSGSS--------PALQDVNFDSEA-- >JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus -MSDNGTQNQRSASR-ITFGGPSDSTDNNQDGGRSGARPKQR------------------RPQGLPNNTASWFTALTQHGKEGL-KFPQGQGVPINTNSGTDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIV---LQLPQGTTLP-KGFYAEGSRSGSQASSR-----SSSRSRGNSRTSTPG---------------------SSRGNSPARVASGGGE----TALALLLLDRLNQL---------ESKVSGKGQ-QQQGQTVTKKSASEASKKPRQ-------KRTATKQYNVTQAFGRRGPDQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGT------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----------------------------------------------QPLPQR-KKQPTVTLLPAADMDD---FSRQLQNSMSGASADSTQA >Jiyuan_84_NA_ARI44812_1_2012_China_Bat_Bat_coronavirus -MSDNGPQNQRSAPR-ITFGGPSDSTDNNQDGGRSGVRPKQR------------------RPQGLPNNTASWFTALTQHGKEGL-KFPQGQGVPINTNSGRDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIV---LQLPQGTTLP-KGFYAEGSRNGSQASSR-----SSSRSRGNSRTSTPG---------------------SSRGNSPARVASGGGE----TALALLLLDRLNQL---------ESKVSGKGQ-QQQGQTVTKKSASEASKKPRQ-------KRTATKQYNVTQAFGRRGPDQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGT------WLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----------------------------------------------QPLPQRQKKQPTVTLLPAADMDD---FSRQLQNSMSGASADSTQA >PREDICT_PDF_2180_N_ARJ34233_1_2013_02_20_Uganda_Bat_Bat_coronavirus -------MATPAAPRAVSFA---DNND-NSNNNQSRGRGRNP------------------KPRPAPNNTVSWYTGLTQHGKVSL-SFPPGQGVPLNANSTPAQNAGYWRRQDRKINTGNGTK-SLAPRWYFYYTGTGPEANLPFRAVKDGIIWVHEDGATDAP-STFGTRNPNNDAAIV---TQFAPGTKLP-KNFHIEGTGGNSQSSSR-----ASSASRNSSRSNSRG----------------SRSGNSSRGTSPGPSGVGAVGG---EMLYLDLLNRLQAL------------ESGKTK-QAQPKVITKKDAVAAKNKMRH-------KRVATKGFNMVQAFGLRGPGDLQGNFGDLQLNKLGTEDPRWPQIAELAPSASAFIGMSQFKLTHQSNDTDGAPVYFLRYSGAIKLDPKNPNYNKWLELIEQNVDAYKTF----PKKEKKQKAPKE-------------------------------------------EPSDQMNVQPPKEQRVQGSITQRSRTP-------RPSVQPGPMTDVNTD >Vs_CoV_1_N_BBJ36015_1_NA_Japan_Bat_Bat_coronavirus -------MATPAAPRAVTFG---DNNDNNTNTQQSRGRGRTP------------------KPRPAPNNTVSWYTGLTQHGKVPL-SFPPGQGVPLNANSTPAQNAGYWRRQDRKINTGNGTK-QLAPRWFFYYTGTGPEANLPFRAVKDGIVWVHEEGATDAP-STFGTRNPNNDAAIV---TQFAPGTKLP-KNFHIEGTGGNSQSSSR-----ASSASRGSSRSSSRG----------------ARSGNSSRSASPGPAGIGAVGGDASSILYLSLLKRLEDL------------EAGKS--KSAPKVVTKKDAAAAKNKMRH-------KRVATKSFNMVQAFGRRGPGDLQGNFGDLQLNKLGTEDPRWPQIAELAPSASAFMGMSQFKLTHQSNDADGSPVYFLRYSGAIKLDPKNPNYQKWMELLEANIDAYKSF----PVKEKKQKADDN-----------------------------KQDSTEDSGDLFAEVVASAMASQSQPQRAPKGSITQRSRAP-----RAPVSQMEDVNQTDDRQ
Reading sequence file /data//pss_subsets/JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus.result/original_alignment/codeml/fasta/JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus.result.1
Found 19 sequences of length 1647
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 49.8%
Found 1240 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0% 15.5% 29.7% 42.5% 54.1% 64.4% 73.4% 81.1% 87.4% 92.5% 96.3% 98.7% 99.9%100.0%
Using a window size of 80 with k as 60
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 600 polymorphic sites
**p-Value(s)**
----------
NSS: 0.00e+00 (1000 permutations)
Max Chi^2: 0.00e+00 (1000 permutations)
PHI (Permutation): 1.00e+00 (1000 permutations)
PHI (Normal): 1.00e+00
#NEXUS
[ID: 2546421544]
begin taxa;
dimensions ntax=19;
taxlabels
16BO133_N_ASO66816_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus
BtCoV_Rh_YN2012_Rs4259_N_QBP43285_1_2013_04_17_China_Unknown_Bat_coronavirus
CMR66_NA_AWV67059_1_2013_12_Cameroon_Bat_Bat_coronavirus
CMR704_P12_N_YP_009824993_1_2013_12_Cameroon_Bat_Bat_coronavirus
CMR705_P13_NA_AWV67075_1_2013_12_Cameroon_Bat_Bat_coronavirus
CMR900_NA_AWV67051_1_2013_12_Cameroon_Bat_Bat_coronavirus
JPDB144_N_ANA96046_1_2012_12_China_Bat_Bat_coronavirus
JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus
Jiyuan_84_NA_ARI44812_1_2012_China_Bat_Bat_coronavirus
PREDICT_PDF_2180_N_ARJ34233_1_2013_02_20_Uganda_Bat_Bat_coronavirus
Vs_CoV_1_N_BBJ36015_1_NA_Japan_Bat_Bat_coronavirus
Anlong_103_NA_ARI44802_1_2013_China_Bat_Bat_coronavirus
Anlong_43_NA_ARI44792_1_2013_China_Bat_Bat_coronavirus
Anlong_112_NA_ARI44807_1_2013_China_Bat_Bat_coronavirus
Anlong_57_NA_ARI44797_1_2013_China_Bat_Bat_coronavirus
BtCoV92_N_QEH60467_1_2015_Singapore_Bat_Bat_coronavirus
BtCoV_Rh_YN2012_Ra13591_N_QBP43296_1_2013_06_01_China_Unknown_Bat_coronavirus
BtCoV_Rh_YN2012_Rs3376_N_QBP43263_1_2012_05_19_China_Unknown_Bat_coronavirus
BtCoV_Rh_YN2012_Rs4125_N_QBP43274_1_2012_09_16_China_Unknown_Bat_coronavirus
;
end;
begin trees;
translate
1 16BO133_N_ASO66816_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus,
2 BtCoV_Rh_YN2012_Rs4259_N_QBP43285_1_2013_04_17_China_Unknown_Bat_coronavirus,
3 CMR66_NA_AWV67059_1_2013_12_Cameroon_Bat_Bat_coronavirus,
4 CMR704_P12_N_YP_009824993_1_2013_12_Cameroon_Bat_Bat_coronavirus,
5 CMR705_P13_NA_AWV67075_1_2013_12_Cameroon_Bat_Bat_coronavirus,
6 CMR900_NA_AWV67051_1_2013_12_Cameroon_Bat_Bat_coronavirus,
7 JPDB144_N_ANA96046_1_2012_12_China_Bat_Bat_coronavirus,
8 JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus,
9 Jiyuan_84_NA_ARI44812_1_2012_China_Bat_Bat_coronavirus,
10 PREDICT_PDF_2180_N_ARJ34233_1_2013_02_20_Uganda_Bat_Bat_coronavirus,
11 Vs_CoV_1_N_BBJ36015_1_NA_Japan_Bat_Bat_coronavirus,
12 Anlong_103_NA_ARI44802_1_2013_China_Bat_Bat_coronavirus,
13 Anlong_43_NA_ARI44792_1_2013_China_Bat_Bat_coronavirus,
14 Anlong_112_NA_ARI44807_1_2013_China_Bat_Bat_coronavirus,
15 Anlong_57_NA_ARI44797_1_2013_China_Bat_Bat_coronavirus,
16 BtCoV92_N_QEH60467_1_2015_Singapore_Bat_Bat_coronavirus,
17 BtCoV_Rh_YN2012_Ra13591_N_QBP43296_1_2013_06_01_China_Unknown_Bat_coronavirus,
18 BtCoV_Rh_YN2012_Rs3376_N_QBP43263_1_2012_05_19_China_Unknown_Bat_coronavirus,
19 BtCoV_Rh_YN2012_Rs4125_N_QBP43274_1_2012_09_16_China_Unknown_Bat_coronavirus
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:7.507257e-03,8:6.650769e-03,((((((((2:2.863985e-03,19:7.965144e-03)1.000:2.158033e-01,18:2.314603e-01)0.977:1.900646e-01,17:4.755143e-01)0.681:2.095880e-01,(13:1.369480e-02,15:2.625732e-02)1.000:1.115090e+00)1.000:2.286941e+00,((3:3.055876e-01,16:2.242418e-01)1.000:1.871444e-01,((4:1.048763e-03,5:1.035722e-03)1.000:1.428386e-01,6:1.028022e-01)1.000:2.354738e-01)0.999:3.844258e-01)0.993:3.659234e-01,(7:2.253232e-01,(10:1.283719e-01,11:1.449462e-01)0.971:7.768924e-02)1.000:4.524031e-01)1.000:7.608754e-01,(12:1.066749e-03,14:1.052616e-03)0.931:1.833698e-02)0.999:7.873304e-02,9:1.541695e-02)0.999:1.313122e-02);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:7.507257e-03,8:6.650769e-03,((((((((2:2.863985e-03,19:7.965144e-03):2.158033e-01,18:2.314603e-01):1.900646e-01,17:4.755143e-01):2.095880e-01,(13:1.369480e-02,15:2.625732e-02):1.115090e+00):2.286941e+00,((3:3.055876e-01,16:2.242418e-01):1.871444e-01,((4:1.048763e-03,5:1.035722e-03):1.428386e-01,6:1.028022e-01):2.354738e-01):3.844258e-01):3.659234e-01,(7:2.253232e-01,(10:1.283719e-01,11:1.449462e-01):7.768924e-02):4.524031e-01):7.608754e-01,(12:1.066749e-03,14:1.052616e-03):1.833698e-02):7.873304e-02,9:1.541695e-02):1.313122e-02);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -10099.67 -10119.81
2 -10100.19 -10122.33
--------------------------------------
TOTAL -10099.90 -10121.72
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 8.712615 0.443487 7.429567 9.971106 8.666142 915.88 944.14 1.001
r(A<->C){all} 0.171104 0.000167 0.147341 0.196500 0.170936 657.74 786.85 1.000
r(A<->G){all} 0.238035 0.000227 0.209421 0.268090 0.237725 753.04 808.25 1.002
r(A<->T){all} 0.121690 0.000120 0.101374 0.143463 0.121390 750.78 866.16 1.000
r(C<->G){all} 0.086293 0.000111 0.065996 0.106374 0.085743 913.95 925.77 1.000
r(C<->T){all} 0.306111 0.000300 0.272822 0.340617 0.305777 695.49 752.91 1.002
r(G<->T){all} 0.076767 0.000092 0.058932 0.095508 0.076489 1030.79 1045.69 1.000
pi(A){all} 0.288423 0.000066 0.272913 0.305252 0.288331 761.88 787.10 1.002
pi(C){all} 0.242808 0.000059 0.228529 0.258006 0.242826 878.44 901.95 1.000
pi(G){all} 0.226230 0.000071 0.209656 0.241788 0.226209 603.04 687.17 1.000
pi(T){all} 0.242539 0.000067 0.227203 0.258865 0.242487 794.06 846.52 1.002
alpha{1,2} 0.648669 0.003697 0.535503 0.772369 0.645780 1043.15 1150.48 1.000
alpha{3} 6.863887 2.934357 3.952215 10.399960 6.642874 1364.80 1432.90 1.000
pinvar{all} 0.012587 0.000070 0.000033 0.028559 0.011293 1125.60 1215.38 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/JTMC15_N_ANA96035_1_2013_08_China_Bat_Bat_coronavirus.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 19 ls = 336
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 5 4 7 4 6 7 | Ser TCT 8 8 12 8 10 7 | Tyr TAT 5 2 3 2 3 10 | Cys TGT 0 0 0 0 0 0
TTC 6 7 5 7 6 4 | TCC 3 3 7 3 7 3 | TAC 6 9 4 9 4 3 | TGC 0 0 2 0 2 0
Leu TTA 1 1 0 1 0 2 | TCA 8 6 2 6 2 7 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 6 5 1 5 1 2 | TCG 1 2 3 2 3 1 | TAG 0 0 0 0 0 0 | Trp TGG 5 5 5 5 5 7
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 3 6 6 6 7 8 | Pro CCT 11 11 10 11 11 16 | His CAT 3 3 0 3 0 5 | Arg CGT 4 3 4 3 4 12
CTC 4 3 6 3 5 1 | CCC 4 4 2 4 2 2 | CAC 2 2 3 2 3 2 | CGC 5 7 6 7 6 5
CTA 4 5 0 5 0 3 | CCA 6 7 10 7 10 6 | Gln CAA 17 18 6 18 5 5 | CGA 2 4 0 4 0 1
CTG 5 2 4 2 4 4 | CCG 2 2 4 2 4 0 | CAG 8 7 14 7 15 7 | CGG 2 0 2 0 2 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 8 8 4 8 3 3 | Thr ACT 13 13 7 13 8 8 | Asn AAT 8 8 11 8 11 24 | Ser AGT 7 5 5 5 6 2
ATC 3 3 6 4 6 2 | ACC 6 5 6 5 6 2 | AAC 6 8 10 8 11 7 | AGC 4 4 4 3 3 3
ATA 1 0 1 0 1 1 | ACA 6 7 7 7 6 4 | Lys AAA 15 14 16 14 17 11 | Arg AGA 8 8 8 8 7 6
Met ATG 4 5 5 5 6 6 | ACG 0 0 1 0 1 2 | AAG 6 6 12 6 12 15 | AGG 2 2 0 2 0 3
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 5 2 5 2 5 10 | Ala GCT 12 14 13 14 15 15 | Asp GAT 8 7 6 7 5 9 | Gly GGT 13 9 8 9 8 13
GTC 4 6 5 6 5 3 | GCC 8 5 10 5 9 6 | GAC 5 5 10 5 10 9 | GGC 10 15 6 15 6 10
GTA 1 1 2 1 1 2 | GCA 8 9 8 9 8 8 | Glu GAA 6 8 5 8 7 6 | GGA 14 11 7 11 7 6
GTG 2 2 8 2 8 2 | GCG 2 3 1 3 1 1 | GAG 4 4 10 4 9 5 | GGG 1 3 1 3 1 2
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 6 7 6 5 6 9 | Ser TCT 8 10 7 7 5 8 | Tyr TAT 4 6 5 5 7 5 | Cys TGT 1 1 1 1 0 0
TTC 7 5 7 8 6 5 | TCC 1 3 4 4 4 7 | TAC 3 4 3 3 4 7 | TGC 0 0 0 0 0 0
Leu TTA 1 0 0 0 2 1 | TCA 8 6 4 3 5 7 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 2 4 4 4 5 5 | TCG 4 0 1 1 3 1 | TAG 0 0 0 0 0 0 | Trp TGG 5 4 4 4 7 7
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 9 6 10 10 6 4 | Pro CCT 14 7 8 8 5 11 | His CAT 5 2 4 3 3 3 | Arg CGT 13 9 10 10 12 6
CTC 1 6 3 3 3 2 | CCC 3 9 2 2 9 3 | CAC 1 3 0 1 3 2 | CGC 6 4 5 5 8 11
CTA 0 4 1 1 1 1 | CCA 8 13 16 15 6 8 | Gln CAA 15 13 13 13 4 8 | CGA 0 1 2 2 0 0
CTG 1 2 2 2 3 2 | CCG 2 1 6 7 2 1 | CAG 10 11 11 11 7 11 | CGG 1 1 0 0 0 1
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 3 5 4 4 1 2 | Thr ACT 10 4 6 6 12 5 | Asn AAT 17 10 11 11 14 16 | Ser AGT 4 8 8 8 5 6
ATC 4 1 3 3 1 6 | ACC 2 7 2 2 6 3 | AAC 7 10 13 13 8 12 | AGC 6 2 3 3 1 3
ATA 2 3 1 1 4 3 | ACA 3 4 5 5 2 4 | Lys AAA 9 14 13 13 8 5 | Arg AGA 2 4 3 3 5 6
Met ATG 7 5 6 6 7 4 | ACG 2 1 3 3 2 1 | AAG 13 10 11 11 14 16 | AGG 1 4 5 5 6 5
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 12 8 10 10 8 6 | Ala GCT 21 12 11 11 14 15 | Asp GAT 7 11 10 8 8 9 | Gly GGT 6 9 13 13 26 9
GTC 4 7 6 6 0 3 | GCC 4 2 2 2 9 3 | GAC 8 7 6 8 10 8 | GGC 9 7 4 4 7 19
GTA 4 4 6 6 2 2 | GCA 4 9 10 11 5 3 | Glu GAA 4 9 11 11 11 7 | GGA 3 10 5 5 3 6
GTG 10 5 4 4 3 4 | GCG 2 0 0 0 3 3 | GAG 7 2 2 2 2 6 | GGG 0 0 0 0 3 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 9 9 8 4 5 5 | Ser TCT 8 10 7 8 8 10 | Tyr TAT 5 7 5 5 4 1 | Cys TGT 0 0 1 0 0 0
TTC 5 6 8 7 6 8 | TCC 7 6 8 3 2 7 | TAC 7 5 4 6 7 8 | TGC 0 0 0 0 0 0
Leu TTA 1 2 4 1 3 1 | TCA 7 5 9 8 8 4 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 5 4 2 6 5 2 | TCG 1 0 0 1 1 0 | TAG 0 0 0 0 0 0 | Trp TGG 7 7 6 5 5 6
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 4 6 8 4 4 11 | Pro CCT 11 11 15 11 11 16 | His CAT 3 2 3 3 3 3 | Arg CGT 6 10 4 4 4 3
CTC 2 4 1 3 4 4 | CCC 3 6 4 4 5 3 | CAC 2 1 2 2 2 2 | CGC 11 8 5 5 5 4
CTA 1 0 2 4 3 0 | CCA 8 7 6 6 6 6 | Gln CAA 8 8 8 17 17 9 | CGA 0 1 2 2 3 4
CTG 2 3 2 4 3 3 | CCG 1 1 1 2 2 1 | CAG 11 13 10 9 9 14 | CGG 1 0 2 2 1 2
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 2 3 5 7 7 6 | Thr ACT 5 6 6 14 15 10 | Asn AAT 16 21 13 8 9 11 | Ser AGT 6 9 5 7 6 4
ATC 6 4 4 3 3 2 | ACC 3 3 5 6 5 7 | AAC 12 6 13 6 6 14 | AGC 3 3 3 4 4 3
ATA 3 0 0 1 1 2 | ACA 4 3 7 7 6 1 | Lys AAA 5 4 13 15 16 10 | Arg AGA 6 7 7 7 8 7
Met ATG 4 5 6 4 4 6 | ACG 1 1 0 0 0 3 | AAG 16 18 10 6 5 9 | AGG 5 2 1 2 2 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 6 6 4 5 4 4 | Ala GCT 15 11 15 13 12 14 | Asp GAT 9 12 9 8 6 9 | Gly GGT 9 10 11 13 13 10
GTC 3 3 8 4 4 6 | GCC 3 1 6 7 7 10 | GAC 8 7 7 5 7 5 | GGC 19 15 2 10 10 8
GTA 2 3 4 1 2 3 | GCA 3 6 8 7 7 1 | Glu GAA 7 6 4 5 6 3 | GGA 6 6 11 14 14 12
GTG 4 4 0 2 3 5 | GCG 3 2 1 3 3 3 | GAG 6 4 5 5 4 5 | GGG 0 3 6 1 1 5
--------------------------------------------------------------------------------------------------------------------------------------
------------------------------------------------------
Phe TTT 7 | Ser TCT 8 | Tyr TAT 1 | Cys TGT 0
TTC 7 | TCC 6 | TAC 7 | TGC 0
Leu TTA 0 | TCA 7 | *** TAA 0 | *** TGA 0
TTG 2 | TCG 0 | TAG 0 | Trp TGG 6
------------------------------------------------------
Leu CTT 7 | Pro CCT 12 | His CAT 0 | Arg CGT 2
CTC 6 | CCC 7 | CAC 5 | CGC 4
CTA 2 | CCA 7 | Gln CAA 4 | CGA 3
CTG 3 | CCG 0 | CAG 16 | CGG 1
------------------------------------------------------
Ile ATT 7 | Thr ACT 5 | Asn AAT 6 | Ser AGT 6
ATC 2 | ACC 9 | AAC 13 | AGC 5
ATA 1 | ACA 5 | Lys AAA 8 | Arg AGA 9
Met ATG 7 | ACG 1 | AAG 13 | AGG 2
------------------------------------------------------
Val GTT 4 | Ala GCT 19 | Asp GAT 8 | Gly GGT 10
GTC 5 | GCC 8 | GAC 7 | GGC 8
GTA 3 | GCA 5 | Glu GAA 7 | GGA 12
GTG 2 | GCG 3 | GAG 2 | GGG 4
------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C1
position 1: T:0.16071 C:0.24405 A:0.28869 G:0.30655
position 2: T:0.18452 C:0.29167 A:0.29464 G:0.22917
position 3: T:0.33631 C:0.22619 A:0.28869 G:0.14881
Average T:0.22718 C:0.25397 A:0.29067 G:0.22817
#2: C2
position 1: T:0.15476 C:0.25000 A:0.28571 G:0.30952
position 2: T:0.17857 C:0.29464 A:0.30060 G:0.22619
position 3: T:0.30655 C:0.25595 A:0.29464 G:0.14286
Average T:0.21329 C:0.26687 A:0.29365 G:0.22619
#3: C3
position 1: T:0.15179 C:0.22917 A:0.30655 G:0.31250
position 2: T:0.19345 C:0.30655 A:0.32738 G:0.17262
position 3: T:0.30060 C:0.27381 A:0.21429 G:0.21131
Average T:0.21528 C:0.26984 A:0.28274 G:0.23214
#4: C4
position 1: T:0.15476 C:0.25000 A:0.28571 G:0.30952
position 2: T:0.18155 C:0.29464 A:0.30060 G:0.22321
position 3: T:0.30655 C:0.25595 A:0.29464 G:0.14286
Average T:0.21429 C:0.26687 A:0.29365 G:0.22520
#5: C5
position 1: T:0.14583 C:0.23214 A:0.30952 G:0.31250
position 2: T:0.19048 C:0.30655 A:0.33333 G:0.16964
position 3: T:0.30357 C:0.27083 A:0.21131 G:0.21429
Average T:0.21329 C:0.26984 A:0.28472 G:0.23214
#6: C6
position 1: T:0.15774 C:0.22917 A:0.29464 G:0.31845
position 2: T:0.17857 C:0.26190 A:0.35119 G:0.20833
position 3: T:0.44345 C:0.18452 A:0.20238 G:0.16964
Average T:0.25992 C:0.22520 A:0.28274 G:0.23214
#7: C7
position 1: T:0.14881 C:0.26488 A:0.27381 G:0.31250
position 2: T:0.21726 C:0.28571 A:0.32738 G:0.16964
position 3: T:0.41667 C:0.19643 A:0.18750 G:0.19940
Average T:0.26091 C:0.24901 A:0.26290 G:0.22718
#8: C8
position 1: T:0.14881 C:0.27381 A:0.27381 G:0.30357
position 2: T:0.21429 C:0.26190 A:0.33333 G:0.19048
position 3: T:0.34226 C:0.22917 A:0.27976 G:0.14881
Average T:0.23512 C:0.25496 A:0.29563 G:0.21429
#9: C9
position 1: T:0.13690 C:0.27679 A:0.28869 G:0.29762
position 2: T:0.21726 C:0.25893 A:0.33631 G:0.18750
position 3: T:0.36905 C:0.18750 A:0.26786 G:0.17560
Average T:0.24107 C:0.24107 A:0.29762 G:0.22024
#10: C10
position 1: T:0.13393 C:0.27679 A:0.28869 G:0.30060
position 2: T:0.21726 C:0.25893 A:0.33631 G:0.18750
position 3: T:0.35714 C:0.19940 A:0.26488 G:0.17857
Average T:0.23611 C:0.24504 A:0.29663 G:0.22222
#11: C11
position 1: T:0.16071 C:0.21429 A:0.28571 G:0.33929
position 2: T:0.17262 C:0.27381 A:0.30655 G:0.24702
position 3: T:0.39286 C:0.23512 A:0.17262 G:0.19940
Average T:0.24206 C:0.24107 A:0.25496 G:0.26190
#12: C12
position 1: T:0.18452 C:0.22024 A:0.28869 G:0.30655
position 2: T:0.17560 C:0.24702 A:0.34226 G:0.23512
position 3: T:0.33929 C:0.27976 A:0.18155 G:0.19940
Average T:0.23313 C:0.24901 A:0.27083 G:0.24702
#13: C13
position 1: T:0.18452 C:0.22024 A:0.28869 G:0.30655
position 2: T:0.17560 C:0.24702 A:0.34226 G:0.23512
position 3: T:0.33929 C:0.27976 A:0.18155 G:0.19940
Average T:0.23313 C:0.24901 A:0.27083 G:0.24702
#14: C14
position 1: T:0.18155 C:0.24107 A:0.28274 G:0.29464
position 2: T:0.18452 C:0.23512 A:0.33929 G:0.24107
position 3: T:0.39583 C:0.23214 A:0.17262 G:0.19940
Average T:0.25397 C:0.23611 A:0.26488 G:0.24504
#15: C15
position 1: T:0.18452 C:0.22321 A:0.29167 G:0.30060
position 2: T:0.19643 C:0.29167 A:0.31548 G:0.19643
position 3: T:0.35417 C:0.23810 A:0.25298 G:0.15476
Average T:0.24504 C:0.25099 A:0.28671 G:0.21726
#16: C16
position 1: T:0.16071 C:0.24405 A:0.28869 G:0.30655
position 2: T:0.17857 C:0.29762 A:0.29762 G:0.22619
position 3: T:0.33929 C:0.22321 A:0.28274 G:0.15476
Average T:0.22619 C:0.25496 A:0.28968 G:0.22917
#17: C17
position 1: T:0.16071 C:0.24405 A:0.28869 G:0.30655
position 2: T:0.18155 C:0.29167 A:0.30060 G:0.22619
position 3: T:0.33036 C:0.22917 A:0.29762 G:0.14286
Average T:0.22421 C:0.25496 A:0.29563 G:0.22520
#18: C18
position 1: T:0.15476 C:0.25298 A:0.28571 G:0.30655
position 2: T:0.20238 C:0.28571 A:0.30655 G:0.20536
position 3: T:0.34821 C:0.27083 A:0.18750 G:0.19345
Average T:0.23512 C:0.26984 A:0.25992 G:0.23512
#19: C19
position 1: T:0.15179 C:0.23512 A:0.29464 G:0.31845
position 2: T:0.19345 C:0.30357 A:0.28869 G:0.21429
position 3: T:0.30357 C:0.29464 A:0.21726 G:0.18452
Average T:0.21627 C:0.27778 A:0.26687 G:0.23909
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 119 | Ser S TCT 157 | Tyr Y TAT 85 | Cys C TGT 5
TTC 120 | TCC 88 | TAC 103 | TGC 4
Leu L TTA 21 | TCA 112 | *** * TAA 0 | *** * TGA 0
TTG 70 | TCG 25 | TAG 0 | Trp W TGG 105
------------------------------------------------------------------------------
Leu L CTT 125 | Pro P CCT 210 | His H CAT 51 | Arg R CGT 123
CTC 64 | CCC 78 | CAC 40 | CGC 117
CTA 37 | CCA 158 | Gln Q CAA 206 | CGA 31
CTG 53 | CCG 41 | CAG 201 | CGG 18
------------------------------------------------------------------------------
Ile I ATT 90 | Thr T ACT 166 | Asn N AAT 233 | Ser S AGT 112
ATC 66 | ACC 90 | AAC 183 | AGC 64
ATA 26 | ACA 93 | Lys K AAA 220 | Arg R AGA 119
Met M ATG 102 | ACG 22 | AAG 209 | AGG 50
------------------------------------------------------------------------------
Val V GTT 116 | Ala A GCT 266 | Asp D GAT 156 | Gly G GGT 212
GTC 88 | GCC 107 | GAC 137 | GGC 184
GTA 50 | GCA 129 | Glu E GAA 131 | GGA 163
GTG 74 | GCG 37 | GAG 88 | GGG 34
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.15883 C:0.24326 A:0.28900 G:0.30890
position 2: T:0.19126 C:0.27867 A:0.32002 G:0.21006
position 3: T:0.34868 C:0.24013 A:0.23434 G:0.17685
Average T:0.23293 C:0.25402 A:0.28112 G:0.23193
Model 1: NearlyNeutral (2 categories)
TREE # 1: (1, 16, ((((((((10, 9), 8), 7), (3, 5)), ((11, 6), ((12, 13), 14))), (15, (18, 19))), (2, 4)), 17)); MP score: 2127
lnL(ntime: 35 np: 38): -11441.475544 +0.000000
20..1 20..16 20..21 21..22 22..23 23..24 24..25 25..26 26..27 27..28 28..10 28..9 27..8 26..7 25..29 29..3 29..5 24..30 30..31 31..11 31..6 30..32 32..33 33..12 33..13 32..14 23..34 34..15 34..35 35..18 35..19 22..36 36..2 36..4 21..17
0.015757 0.008915 0.026842 0.140692 3.320663 1.605375 6.493573 1.926456 0.910705 0.567028 0.000004 0.025223 0.623637 1.923844 3.681579 0.000004 0.065324 1.974293 1.181847 0.948498 0.639358 1.114986 0.363578 0.000004 0.000004 0.234210 2.256538 0.832961 0.391378 0.435161 0.466716 0.064658 0.000004 0.003036 0.033214 1.420165 0.952394 0.079231
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 32.276066
(1: 0.015757, 16: 0.008915, ((((((((10: 0.000004, 9: 0.025223): 0.567028, 8: 0.623637): 0.910705, 7: 1.923844): 1.926456, (3: 0.000004, 5: 0.065324): 3.681579): 6.493573, ((11: 0.948498, 6: 0.639358): 1.181847, ((12: 0.000004, 13: 0.000004): 0.363578, 14: 0.234210): 1.114986): 1.974293): 1.605375, (15: 0.832961, (18: 0.435161, 19: 0.466716): 0.391378): 2.256538): 3.320663, (2: 0.000004, 4: 0.003036): 0.064658): 0.140692, 17: 0.033214): 0.026842);
(C1: 0.015757, C16: 0.008915, ((((((((C10: 0.000004, C9: 0.025223): 0.567028, C8: 0.623637): 0.910705, C7: 1.923844): 1.926456, (C3: 0.000004, C5: 0.065324): 3.681579): 6.493573, ((C11: 0.948498, C6: 0.639358): 1.181847, ((C12: 0.000004, C13: 0.000004): 0.363578, C14: 0.234210): 1.114986): 1.974293): 1.605375, (C15: 0.832961, (C18: 0.435161, C19: 0.466716): 0.391378): 2.256538): 3.320663, (C2: 0.000004, C4: 0.003036): 0.064658): 0.140692, C17: 0.033214): 0.026842);
Detailed output identifying parameters
kappa (ts/tv) = 1.42017
MLEs of dN/dS (w) for site classes (K=2)
p: 0.95239 0.04761
w: 0.07923 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
20..1 0.016 760.5 247.5 0.1231 0.0019 0.0155 1.5 3.8
20..16 0.009 760.5 247.5 0.1231 0.0011 0.0088 0.8 2.2
20..21 0.027 760.5 247.5 0.1231 0.0033 0.0264 2.5 6.5
21..22 0.141 760.5 247.5 0.1231 0.0171 0.1386 13.0 34.3
22..23 3.321 760.5 247.5 0.1231 0.4025 3.2709 306.1 809.6
23..24 1.605 760.5 247.5 0.1231 0.1946 1.5813 148.0 391.4
24..25 6.494 760.5 247.5 0.1231 0.7872 6.3963 598.6 1583.2
25..26 1.926 760.5 247.5 0.1231 0.2335 1.8976 177.6 469.7
26..27 0.911 760.5 247.5 0.1231 0.1104 0.8971 84.0 222.0
27..28 0.567 760.5 247.5 0.1231 0.0687 0.5585 52.3 138.2
28..10 0.000 760.5 247.5 0.1231 0.0000 0.0000 0.0 0.0
28..9 0.025 760.5 247.5 0.1231 0.0031 0.0248 2.3 6.1
27..8 0.624 760.5 247.5 0.1231 0.0756 0.6143 57.5 152.1
26..7 1.924 760.5 247.5 0.1231 0.2332 1.8950 177.4 469.1
25..29 3.682 760.5 247.5 0.1231 0.4463 3.6264 339.4 897.6
29..3 0.000 760.5 247.5 0.1231 0.0000 0.0000 0.0 0.0
29..5 0.065 760.5 247.5 0.1231 0.0079 0.0643 6.0 15.9
24..30 1.974 760.5 247.5 0.1231 0.2393 1.9447 182.0 481.4
30..31 1.182 760.5 247.5 0.1231 0.1433 1.1641 109.0 288.1
31..11 0.948 760.5 247.5 0.1231 0.1150 0.9343 87.4 231.3
31..6 0.639 760.5 247.5 0.1231 0.0775 0.6298 58.9 155.9
30..32 1.115 760.5 247.5 0.1231 0.1352 1.0983 102.8 271.8
32..33 0.364 760.5 247.5 0.1231 0.0441 0.3581 33.5 88.6
33..12 0.000 760.5 247.5 0.1231 0.0000 0.0000 0.0 0.0
33..13 0.000 760.5 247.5 0.1231 0.0000 0.0000 0.0 0.0
32..14 0.234 760.5 247.5 0.1231 0.0284 0.2307 21.6 57.1
23..34 2.257 760.5 247.5 0.1231 0.2735 2.2227 208.0 550.2
34..15 0.833 760.5 247.5 0.1231 0.1010 0.8205 76.8 203.1
34..35 0.391 760.5 247.5 0.1231 0.0474 0.3855 36.1 95.4
35..18 0.435 760.5 247.5 0.1231 0.0528 0.4286 40.1 106.1
35..19 0.467 760.5 247.5 0.1231 0.0566 0.4597 43.0 113.8
22..36 0.065 760.5 247.5 0.1231 0.0078 0.0637 6.0 15.8
36..2 0.000 760.5 247.5 0.1231 0.0000 0.0000 0.0 0.0
36..4 0.003 760.5 247.5 0.1231 0.0004 0.0030 0.3 0.7
21..17 0.033 760.5 247.5 0.1231 0.0040 0.0327 3.1 8.1
Time used: 5:20
Model 2: PositiveSelection (3 categories)
TREE # 1: (1, 16, ((((((((10, 9), 8), 7), (3, 5)), ((11, 6), ((12, 13), 14))), (15, (18, 19))), (2, 4)), 17)); MP score: 2127
lnL(ntime: 35 np: 40): -11441.475544 +0.000000
20..1 20..16 20..21 21..22 22..23 23..24 24..25 25..26 26..27 27..28 28..10 28..9 27..8 26..7 25..29 29..3 29..5 24..30 30..31 31..11 31..6 30..32 32..33 33..12 33..13 32..14 23..34 34..15 34..35 35..18 35..19 22..36 36..2 36..4 21..17
0.015757 0.008915 0.026842 0.140692 3.320661 1.605379 6.493559 1.926460 0.910705 0.567028 0.000004 0.025223 0.623637 1.923846 3.681578 0.000004 0.065324 1.974295 1.181847 0.948499 0.639358 1.114986 0.363577 0.000004 0.000004 0.234210 2.256536 0.832962 0.391378 0.435161 0.466715 0.064659 0.000004 0.003036 0.033214 1.420166 0.952394 0.016873 0.079231 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 32.276058
(1: 0.015757, 16: 0.008915, ((((((((10: 0.000004, 9: 0.025223): 0.567028, 8: 0.623637): 0.910705, 7: 1.923846): 1.926460, (3: 0.000004, 5: 0.065324): 3.681578): 6.493559, ((11: 0.948499, 6: 0.639358): 1.181847, ((12: 0.000004, 13: 0.000004): 0.363577, 14: 0.234210): 1.114986): 1.974295): 1.605379, (15: 0.832962, (18: 0.435161, 19: 0.466715): 0.391378): 2.256536): 3.320661, (2: 0.000004, 4: 0.003036): 0.064659): 0.140692, 17: 0.033214): 0.026842);
(C1: 0.015757, C16: 0.008915, ((((((((C10: 0.000004, C9: 0.025223): 0.567028, C8: 0.623637): 0.910705, C7: 1.923846): 1.926460, (C3: 0.000004, C5: 0.065324): 3.681578): 6.493559, ((C11: 0.948499, C6: 0.639358): 1.181847, ((C12: 0.000004, C13: 0.000004): 0.363577, C14: 0.234210): 1.114986): 1.974295): 1.605379, (C15: 0.832962, (C18: 0.435161, C19: 0.466715): 0.391378): 2.256536): 3.320661, (C2: 0.000004, C4: 0.003036): 0.064659): 0.140692, C17: 0.033214): 0.026842);
Detailed output identifying parameters
kappa (ts/tv) = 1.42017
MLEs of dN/dS (w) for site classes (K=3)
p: 0.95239 0.01687 0.03073
w: 0.07923 1.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
20..1 0.016 760.5 247.5 0.1231 0.0019 0.0155 1.5 3.8
20..16 0.009 760.5 247.5 0.1231 0.0011 0.0088 0.8 2.2
20..21 0.027 760.5 247.5 0.1231 0.0033 0.0264 2.5 6.5
21..22 0.141 760.5 247.5 0.1231 0.0171 0.1386 13.0 34.3
22..23 3.321 760.5 247.5 0.1231 0.4025 3.2709 306.1 809.6
23..24 1.605 760.5 247.5 0.1231 0.1946 1.5813 148.0 391.4
24..25 6.494 760.5 247.5 0.1231 0.7872 6.3963 598.6 1583.2
25..26 1.926 760.5 247.5 0.1231 0.2335 1.8976 177.6 469.7
26..27 0.911 760.5 247.5 0.1231 0.1104 0.8971 84.0 222.0
27..28 0.567 760.5 247.5 0.1231 0.0687 0.5585 52.3 138.2
28..10 0.000 760.5 247.5 0.1231 0.0000 0.0000 0.0 0.0
28..9 0.025 760.5 247.5 0.1231 0.0031 0.0248 2.3 6.1
27..8 0.624 760.5 247.5 0.1231 0.0756 0.6143 57.5 152.1
26..7 1.924 760.5 247.5 0.1231 0.2332 1.8950 177.4 469.1
25..29 3.682 760.5 247.5 0.1231 0.4463 3.6264 339.4 897.6
29..3 0.000 760.5 247.5 0.1231 0.0000 0.0000 0.0 0.0
29..5 0.065 760.5 247.5 0.1231 0.0079 0.0643 6.0 15.9
24..30 1.974 760.5 247.5 0.1231 0.2393 1.9447 182.0 481.4
30..31 1.182 760.5 247.5 0.1231 0.1433 1.1641 109.0 288.1
31..11 0.948 760.5 247.5 0.1231 0.1150 0.9343 87.4 231.3
31..6 0.639 760.5 247.5 0.1231 0.0775 0.6298 58.9 155.9
30..32 1.115 760.5 247.5 0.1231 0.1352 1.0983 102.8 271.8
32..33 0.364 760.5 247.5 0.1231 0.0441 0.3581 33.5 88.6
33..12 0.000 760.5 247.5 0.1231 0.0000 0.0000 0.0 0.0
33..13 0.000 760.5 247.5 0.1231 0.0000 0.0000 0.0 0.0
32..14 0.234 760.5 247.5 0.1231 0.0284 0.2307 21.6 57.1
23..34 2.257 760.5 247.5 0.1231 0.2735 2.2227 208.0 550.2
34..15 0.833 760.5 247.5 0.1231 0.1010 0.8205 76.8 203.1
34..35 0.391 760.5 247.5 0.1231 0.0474 0.3855 36.1 95.4
35..18 0.435 760.5 247.5 0.1231 0.0528 0.4286 40.1 106.1
35..19 0.467 760.5 247.5 0.1231 0.0566 0.4597 43.0 113.8
22..36 0.065 760.5 247.5 0.1231 0.0078 0.0637 6.0 15.8
36..2 0.000 760.5 247.5 0.1231 0.0000 0.0000 0.0 0.0
36..4 0.003 760.5 247.5 0.1231 0.0004 0.0030 0.3 0.7
21..17 0.033 760.5 247.5 0.1231 0.0040 0.0327 3.1 8.1
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
335 S 0.566 1.318 +- 0.458
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.936 0.016 0.009 0.007 0.006 0.006 0.006 0.005 0.005 0.004
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.092
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.009 0.899
sum of density on p0-p1 = 1.000000
Time used: 15:04
Model 7: beta (10 categories)
TREE # 1: (1, 16, ((((((((10, 9), 8), 7), (3, 5)), ((11, 6), ((12, 13), 14))), (15, (18, 19))), (2, 4)), 17)); MP score: 2127
lnL(ntime: 35 np: 38): -11350.660993 +0.000000
20..1 20..16 20..21 21..22 22..23 23..24 24..25 25..26 26..27 27..28 28..10 28..9 27..8 26..7 25..29 29..3 29..5 24..30 30..31 31..11 31..6 30..32 32..33 33..12 33..13 32..14 23..34 34..15 34..35 35..18 35..19 22..36 36..2 36..4 21..17
0.015906 0.008800 0.026993 0.105231 3.485085 1.976676 11.652387 0.879349 0.910378 0.542388 0.000004 0.025312 0.644812 1.673635 5.335955 0.000004 0.065565 2.081667 1.448275 0.977176 0.580654 0.774455 0.362974 0.000004 0.000004 0.232871 2.304733 0.796490 0.444779 0.429606 0.471872 0.100719 0.000004 0.003045 0.033307 1.450319 1.236557 11.509073
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 38.391114
(1: 0.015906, 16: 0.008800, ((((((((10: 0.000004, 9: 0.025312): 0.542388, 8: 0.644812): 0.910378, 7: 1.673635): 0.879349, (3: 0.000004, 5: 0.065565): 5.335955): 11.652387, ((11: 0.977176, 6: 0.580654): 1.448275, ((12: 0.000004, 13: 0.000004): 0.362974, 14: 0.232871): 0.774455): 2.081667): 1.976676, (15: 0.796490, (18: 0.429606, 19: 0.471872): 0.444779): 2.304733): 3.485085, (2: 0.000004, 4: 0.003045): 0.100719): 0.105231, 17: 0.033307): 0.026993);
(C1: 0.015906, C16: 0.008800, ((((((((C10: 0.000004, C9: 0.025312): 0.542388, C8: 0.644812): 0.910378, C7: 1.673635): 0.879349, (C3: 0.000004, C5: 0.065565): 5.335955): 11.652387, ((C11: 0.977176, C6: 0.580654): 1.448275, ((C12: 0.000004, C13: 0.000004): 0.362974, C14: 0.232871): 0.774455): 2.081667): 1.976676, (C15: 0.796490, (C18: 0.429606, C19: 0.471872): 0.444779): 2.304733): 3.485085, (C2: 0.000004, C4: 0.003045): 0.100719): 0.105231, C17: 0.033307): 0.026993);
Detailed output identifying parameters
kappa (ts/tv) = 1.45032
Parameters in M7 (beta):
p = 1.23656 q = 11.50907
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00874 0.02266 0.03650 0.05120 0.06745 0.08604 0.10827 0.13658 0.17707 0.25617
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
20..1 0.016 759.7 248.3 0.0951 0.0016 0.0167 1.2 4.1
20..16 0.009 759.7 248.3 0.0951 0.0009 0.0092 0.7 2.3
20..21 0.027 759.7 248.3 0.0951 0.0027 0.0283 2.0 7.0
21..22 0.105 759.7 248.3 0.0951 0.0105 0.1103 8.0 27.4
22..23 3.485 759.7 248.3 0.0951 0.3473 3.6530 263.8 907.2
23..24 1.977 759.7 248.3 0.0951 0.1970 2.0719 149.6 514.5
24..25 11.652 759.7 248.3 0.0951 1.1612 12.2140 882.1 3033.1
25..26 0.879 759.7 248.3 0.0951 0.0876 0.9217 66.6 228.9
26..27 0.910 759.7 248.3 0.0951 0.0907 0.9543 68.9 237.0
27..28 0.542 759.7 248.3 0.0951 0.0540 0.5685 41.1 141.2
28..10 0.000 759.7 248.3 0.0951 0.0000 0.0000 0.0 0.0
28..9 0.025 759.7 248.3 0.0951 0.0025 0.0265 1.9 6.6
27..8 0.645 759.7 248.3 0.0951 0.0643 0.6759 48.8 167.8
26..7 1.674 759.7 248.3 0.0951 0.1668 1.7543 126.7 435.6
25..29 5.336 759.7 248.3 0.0951 0.5317 5.5931 403.9 1388.9
29..3 0.000 759.7 248.3 0.0951 0.0000 0.0000 0.0 0.0
29..5 0.066 759.7 248.3 0.0951 0.0065 0.0687 5.0 17.1
24..30 2.082 759.7 248.3 0.0951 0.2074 2.1820 157.6 541.9
30..31 1.448 759.7 248.3 0.0951 0.1443 1.5181 109.6 377.0
31..11 0.977 759.7 248.3 0.0951 0.0974 1.0243 74.0 254.4
31..6 0.581 759.7 248.3 0.0951 0.0579 0.6086 44.0 151.1
30..32 0.774 759.7 248.3 0.0951 0.0772 0.8118 58.6 201.6
32..33 0.363 759.7 248.3 0.0951 0.0362 0.3805 27.5 94.5
33..12 0.000 759.7 248.3 0.0951 0.0000 0.0000 0.0 0.0
33..13 0.000 759.7 248.3 0.0951 0.0000 0.0000 0.0 0.0
32..14 0.233 759.7 248.3 0.0951 0.0232 0.2441 17.6 60.6
23..34 2.305 759.7 248.3 0.0951 0.2297 2.4158 174.5 599.9
34..15 0.796 759.7 248.3 0.0951 0.0794 0.8349 60.3 207.3
34..35 0.445 759.7 248.3 0.0951 0.0443 0.4662 33.7 115.8
35..18 0.430 759.7 248.3 0.0951 0.0428 0.4503 32.5 111.8
35..19 0.472 759.7 248.3 0.0951 0.0470 0.4946 35.7 122.8
22..36 0.101 759.7 248.3 0.0951 0.0100 0.1056 7.6 26.2
36..2 0.000 759.7 248.3 0.0951 0.0000 0.0000 0.0 0.0
36..4 0.003 759.7 248.3 0.0951 0.0003 0.0032 0.2 0.8
21..17 0.033 759.7 248.3 0.0951 0.0033 0.0349 2.5 8.7
Time used: 37:45
Model 8: beta&w>1 (11 categories)
TREE # 1: (1, 16, ((((((((10, 9), 8), 7), (3, 5)), ((11, 6), ((12, 13), 14))), (15, (18, 19))), (2, 4)), 17)); MP score: 2127
lnL(ntime: 35 np: 40): -11347.750222 +0.000000
20..1 20..16 20..21 21..22 22..23 23..24 24..25 25..26 26..27 27..28 28..10 28..9 27..8 26..7 25..29 29..3 29..5 24..30 30..31 31..11 31..6 30..32 32..33 33..12 33..13 32..14 23..34 34..15 34..35 35..18 35..19 22..36 36..2 36..4 21..17
0.015890 0.008823 0.026998 0.113456 3.537452 2.009657 11.558636 0.973530 0.924575 0.539769 0.000004 0.025220 0.650961 1.740651 5.338195 0.000004 0.065362 2.122965 1.465249 0.982144 0.583566 0.806144 0.363352 0.000004 0.000004 0.233686 2.345370 0.797764 0.447657 0.426251 0.477692 0.092502 0.000004 0.003041 0.033298 1.456183 0.991013 1.335706 13.247452 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 38.709878
(1: 0.015890, 16: 0.008823, ((((((((10: 0.000004, 9: 0.025220): 0.539769, 8: 0.650961): 0.924575, 7: 1.740651): 0.973530, (3: 0.000004, 5: 0.065362): 5.338195): 11.558636, ((11: 0.982144, 6: 0.583566): 1.465249, ((12: 0.000004, 13: 0.000004): 0.363352, 14: 0.233686): 0.806144): 2.122965): 2.009657, (15: 0.797764, (18: 0.426251, 19: 0.477692): 0.447657): 2.345370): 3.537452, (2: 0.000004, 4: 0.003041): 0.092502): 0.113456, 17: 0.033298): 0.026998);
(C1: 0.015890, C16: 0.008823, ((((((((C10: 0.000004, C9: 0.025220): 0.539769, C8: 0.650961): 0.924575, C7: 1.740651): 0.973530, (C3: 0.000004, C5: 0.065362): 5.338195): 11.558636, ((C11: 0.982144, C6: 0.583566): 1.465249, ((C12: 0.000004, C13: 0.000004): 0.363352, C14: 0.233686): 0.806144): 2.122965): 2.009657, (C15: 0.797764, (C18: 0.426251, C19: 0.477692): 0.447657): 2.345370): 3.537452, (C2: 0.000004, C4: 0.003041): 0.092502): 0.113456, C17: 0.033298): 0.026998);
Detailed output identifying parameters
kappa (ts/tv) = 1.45618
Parameters in M8 (beta&w>1):
p0 = 0.99101 p = 1.33571 q = 13.24745
(p1 = 0.00899) w = 1.00000
MLEs of dN/dS (w) for site classes (K=11)
p: 0.09910 0.09910 0.09910 0.09910 0.09910 0.09910 0.09910 0.09910 0.09910 0.09910 0.00899
w: 0.00949 0.02318 0.03633 0.05008 0.06510 0.08215 0.10241 0.12813 0.16480 0.23650 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
20..1 0.016 759.5 248.5 0.0980 0.0016 0.0165 1.2 4.1
20..16 0.009 759.5 248.5 0.0980 0.0009 0.0092 0.7 2.3
20..21 0.027 759.5 248.5 0.0980 0.0028 0.0281 2.1 7.0
21..22 0.113 759.5 248.5 0.0980 0.0116 0.1181 8.8 29.3
22..23 3.537 759.5 248.5 0.0980 0.3607 3.6808 274.0 914.6
23..24 2.010 759.5 248.5 0.0980 0.2049 2.0911 155.6 519.6
24..25 11.559 759.5 248.5 0.0980 1.1786 12.0269 895.2 2988.5
25..26 0.974 759.5 248.5 0.0980 0.0993 1.0130 75.4 251.7
26..27 0.925 759.5 248.5 0.0980 0.0943 0.9620 71.6 239.1
27..28 0.540 759.5 248.5 0.0980 0.0550 0.5616 41.8 139.6
28..10 0.000 759.5 248.5 0.0980 0.0000 0.0000 0.0 0.0
28..9 0.025 759.5 248.5 0.0980 0.0026 0.0262 2.0 6.5
27..8 0.651 759.5 248.5 0.0980 0.0664 0.6773 50.4 168.3
26..7 1.741 759.5 248.5 0.0980 0.1775 1.8112 134.8 450.1
25..29 5.338 759.5 248.5 0.0980 0.5443 5.5545 413.4 1380.2
29..3 0.000 759.5 248.5 0.0980 0.0000 0.0000 0.0 0.0
29..5 0.065 759.5 248.5 0.0980 0.0067 0.0680 5.1 16.9
24..30 2.123 759.5 248.5 0.0980 0.2165 2.2090 164.4 548.9
30..31 1.465 759.5 248.5 0.0980 0.1494 1.5246 113.5 378.8
31..11 0.982 759.5 248.5 0.0980 0.1001 1.0219 76.1 253.9
31..6 0.584 759.5 248.5 0.0980 0.0595 0.6072 45.2 150.9
30..32 0.806 759.5 248.5 0.0980 0.0822 0.8388 62.4 208.4
32..33 0.363 759.5 248.5 0.0980 0.0370 0.3781 28.1 93.9
33..12 0.000 759.5 248.5 0.0980 0.0000 0.0000 0.0 0.0
33..13 0.000 759.5 248.5 0.0980 0.0000 0.0000 0.0 0.0
32..14 0.234 759.5 248.5 0.0980 0.0238 0.2432 18.1 60.4
23..34 2.345 759.5 248.5 0.0980 0.2391 2.4404 181.6 606.4
34..15 0.798 759.5 248.5 0.0980 0.0813 0.8301 61.8 206.3
34..35 0.448 759.5 248.5 0.0980 0.0456 0.4658 34.7 115.7
35..18 0.426 759.5 248.5 0.0980 0.0435 0.4435 33.0 110.2
35..19 0.478 759.5 248.5 0.0980 0.0487 0.4970 37.0 123.5
22..36 0.093 759.5 248.5 0.0980 0.0094 0.0962 7.2 23.9
36..2 0.000 759.5 248.5 0.0980 0.0000 0.0000 0.0 0.0
36..4 0.003 759.5 248.5 0.0980 0.0003 0.0032 0.2 0.8
21..17 0.033 759.5 248.5 0.0980 0.0034 0.0346 2.6 8.6
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
335 S 0.542 1.899 +- 1.816
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000
p : 0.019 0.981 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.000 0.000 0.000 0.001 0.003 0.006 0.009 0.981
ws: 0.366 0.155 0.107 0.082 0.066 0.055 0.048 0.043 0.040 0.038
Time used: 1:11:55
Model 1: NearlyNeutral -11441.475544 Model 2: PositiveSelection -11441.475544 Model 7: beta -11350.660993 Model 8: beta&w>1 -11347.750222 Model 2 vs 1 0 Model 8 vs 7 5.821542
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
