--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -6882.91 -6906.40
2 -6884.11 -6905.48
--------------------------------------
TOTAL -6883.34 -6906.04
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 10.965327 1.459421 8.851227 13.502200 10.863880 1018.08 1051.88 1.000
r(A<->C){all} 0.147551 0.000292 0.113332 0.180116 0.147638 906.82 912.58 1.000
r(A<->G){all} 0.248913 0.000401 0.213136 0.290718 0.248918 907.80 989.36 1.000
r(A<->T){all} 0.111583 0.000181 0.082532 0.134608 0.111264 814.10 974.59 1.000
r(C<->G){all} 0.108698 0.000236 0.080007 0.139366 0.107996 938.55 940.11 1.000
r(C<->T){all} 0.304697 0.000452 0.259652 0.343440 0.304539 1010.79 1080.06 1.000
r(G<->T){all} 0.078557 0.000135 0.056048 0.101163 0.077937 918.18 1148.99 1.000
pi(A){all} 0.252837 0.000084 0.233630 0.269715 0.252680 915.20 1104.96 1.000
pi(C){all} 0.224048 0.000070 0.207925 0.240550 0.224080 1056.10 1119.98 1.000
pi(G){all} 0.218193 0.000085 0.200090 0.235390 0.218098 1025.58 1052.51 1.000
pi(T){all} 0.304921 0.000101 0.283051 0.322434 0.304976 1017.03 1052.91 1.000
alpha{1,2} 0.431969 0.001736 0.360063 0.518188 0.428836 1030.14 1123.97 1.000
alpha{3} 4.130119 1.322120 2.121654 6.269587 3.989915 1425.21 1436.81 1.001
pinvar{all} 0.025931 0.000157 0.004013 0.051202 0.024625 1425.00 1463.00 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -6522.468689
Model 2: PositiveSelection -6522.468689
Model 7: beta -6501.174144
Model 8: beta&w>1 -6480.407823
Model 2 vs 1 0
Model 8 vs 7 41.532642
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
1 A 0.998** 1.258
2 E 1.000** 1.260
4 G 0.999** 1.259
160 K 0.994** 1.254
172 R 0.975* 1.231
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
2 E 0.979* 3.493 +- 2.033
4 G 0.559 1.983 +- 1.774
160 K 0.602 2.208 +- 1.939
172 R 0.613 2.364 +- 2.116
-- Starting log on Thu Oct 27 00:03:58 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.06 sec, SCORE=1000, Nseq=19, Len=246
C1 -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWI
C2 -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWI
C3 -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWI
C4 ------------------MSGSNHTVPVGEVLEHLRNWSFAWNIILTVLI
C5 ------------------MSGSNQTVPVGEVLEHLRNWSFAWNIILTVLI
C6 ------------------MTESNATLPKAEVLAAVRDWNFTLSLFLLFIT
C7 MNIFCLLCVMALVPYTFADSSTNNSIPVDQVVEHLRNWNFSWNIILTVFL
C8 -------------------MTDNGTISVEQVVAHLRNWNFSWNVILTVFL
C9 -----------------MSNSTSGTIPVEQVVEHLRNWNFSWNVILTIFL
C10 -----------------MSNSTSGTIPVEQVVEHLRNWNFSWNVILTIFL
C11 ----------------MSGECNNNTVSRTEVIAALKDWNFAVSVLLLFIT
C12 ------------------MSSSNSTFSKEEVFKAVKDWNFAVAILLLFVT
C13 ------------------MSSSNSTFSKEEVFKAVKDWNFAVAILLLFVT
C14 -------------------MSSNGSLTKDEVVNIIKDWNFSWSIIFLLIT
C15 ------------------MSSDNSTFSKEEVFKAVRDWNFAVAILLLFVT
C16 -------------------MADNGTISVEELKRLLEQWNLVIGFLFLAWI
C17 -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWI
C18 -------------------MSNMTQLTEQQIISIIKDWNFAWSLIFLLIT
C19 --------------------MSNSSLTNEQIVSIIKDWNFAWSIIFLLIT
.. :: :.:*.: .::
C1 MLLQFAYSNRNRLLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGI
C2 MLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGI
C3 MLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGI
C4 VMLQYGNFKYSKILYGIKMAVLWLLWPCVIALSVTNAWADFNVNWAYFGI
C5 VMLQYGNFKYSKILYGIKMAVLWLLWPCVIALSVTNAWADFNVNWAYFGI
C6 ILLQWGYPSRCKPLWVVKMCILWLLWPLSIAAAVFAAV--YPINQVAFGF
C7 VVLQYGQYKYSVVLYVLKMLVLWLLWPLVLALSIFDAVVSFGDNWTYFAF
C8 IVLQYGHYKYSVVLYSLKMMILWLLWPLVLALSIFDSWASFGVNWTFFAF
C9 IVLQYGQYKYSVVLYGLKMLILWLLWPLVLALSIFDSWASFGVNWTFFAF
C10 IVLQYGQYKYSVVLYGLKMLILWLLWPLVLALSIFDSWASFGVNWTFFAF
C11 VLLQWGYPSRCKPIWVIKMFILWLLWPLSIAAAVFAAI--HPINSVSFGF
C12 ILLQWGYPSRVKAIWVVKMFILWLLWPVSIAASVFAAV--YPINKVAFGF
C13 ILLQWGYPSRVKAIWVVKMFILWLLWPVSIAASVFAAV--YPINKVAFGF
C14 IVLQYGYPSRSMTVYVFKMFILWLLWPASMALSIFSAI--YPISLASQII
C15 ILLQWGYPSRIKAIWVVKMFILWLLWPVSIAASVFAAV--YPINKVAFGF
C16 MLLQFAYSNRNRLLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGI
C17 MLLQFAYSNRNRLLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGI
C18 IVLQYGYPSRSMTVYVFKMFVLWLLWPSSMALSIFSAV--YPIDLASQII
C19 IVLQYGYPSRSMTVYVFKMFVLWLLWPASMALSIFSAI--YPVDLSTQII
::**:. . :: .*: .****** :* : : . . :
C1 AIAMACIVGLMWLSYFFASFRLFARTRSMWSFNPETNILLNVPLRGTIVT
C2 AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVT
C3 AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVT
C4 SIFMLVVTLVLWIMYFLNSFRLYRRTRSFWAFNPETDSIIVFSVYGTTYS
C5 SIFMLVVTLVLWIMYFLNSFRLYRRTRSFWAFNPETDSIIVFSVYGTTYS
C6 AIAFACISGLMWLCYFISSFRLLCRTGSAWSFMPETDMLLNVPLLGRTVT
C7 SILMACITFVLWIMYFANSFRLYRRTNSFWAFNPETDAIITLSVLGRQVS
C8 SILMCCITFILWVMYFVNSFRLYRRTQTFWAFNPETDAIMTLSVLGRQVS
C9 SILMSCLTLILWMMYFINSFRLYRRTQTFWAFNPETDAIITLSVFGRQVS
C10 SILMSCITLILWMMYFINSFRLYRRTQTFWAFNPETDAIITLSVFGRQVS
C11 AIAFACISGIMWLSYFISSFRLLCRTGSAWSFMPETDMLINIPLLGRTVT
C12 AIAFACITALMWLSYFVSSLRLLCRTGSWWAFMPETNMLLNVPFIGRTVT
C13 AIAFACITALMWLSYFVSSLRLLCRTGSWWAFMPETNMLLNVPFIGRTVT
C14 SGILAAACAGMWLAYFIQSIRLFMRTGSWWSFNPESNCLLNVPIGGTTVV
C15 AIAFACITALMWLSYFVSSLRLLCRTGSWWAFMPETNMLLNVPFIGRTVT
C16 AIAMACIVGLMWLSYFFASFRLFARTRSMWSFNPETNILLNVPLRGTIVT
C17 AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVT
C18 SGIIAGVSALMWISYFVQSIRLFMRTGSWWSFNPETNCLLNVPLGGTTVV
C19 SGIIAFISACMWISYFVQSIRLFMRTGSWWSFNPETNCLLNVPIGGTTVV
: : :*: ** *:** ** : *:* **:: :: ... *
C1 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSY
C2 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSY
C3 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSY
C4 IPVIQAPQGITFTILSGTLLVDGIKIATAVRIDALPQYVTVAKATTTIVF
C5 IPVIQAPQGITFTILSGTLLVDGIKIATAVRIDALPQYVTVAKATTTIVF
C6 RPILADSPAIQFLLVRGEIQFEGFKLGR-CDPGDMPDIVTVAKPA-SLHW
C7 IPIIVAPTGITLTCLNGTLLVEGIKVATGVQVSQLPTYITVAKPTTTIVY
C8 IPVIVAPTGITLTVLSGTLLMEGIKVATGVQVNQLPSYITVAKPTTTIIY
C9 IPTIVAPTGITLTVLSGTLLVEGIKVATGVQVSQLPTYITVAKPSTTIVY
C10 IPTIVAPTGITLTVLSGTLLVEGIKVATGVQVSQLPTYITVAKPSTTIVY
C11 RPIIADSPAVQFLIIRGELRFDGFTLGR-CDPNDMPDIVTIARPN-SLHW
C12 RPILNDSAALQFFILRGQVQFEGFVLGK-CAPTEMPEVVTVAKAG-SLVW
C13 RPILNDSAALQFFILRGQVQFEGFVLGK-CAPTEMPEVVTVAKAG-SLVW
C14 RPLVEDSTSVTAVVNDGHLKMAGMHFGR-CDYDRLPMEITVAKPS-VLIA
C15 RPILNDSAALQFFVLRGQVQFDGFILGK-CAPQEMPEVVTVAKAS-SLVW
C16 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSY
C17 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSY
C18 RPLVEDSTSVTAVVANGYLKMAGMHFGA-CDYDRLPSEVTVAKPN-VLIA
C19 RPLVEDSTSVTAVVTNGYLKIAGMHFGQ-CDYRSLPNEVTVAKPN-VLIA
* : : * : . * .. :* :*:* . :
C1 YKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHSGS--NDNIALLVQ
C2 YKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHAGS--NDNIALLVQ
C3 YKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHAGS--NDNIALLVQ
C4 HRVGKAVNERTQTGWLFFVRSGYGDYAAHSTGTGQMTESEKLLHIA
C5 HRVGKAVNERTQTGWLFFVRSGYGDYAAHSTGTGQMTESEKLLHIA
C6 YKKALTRNIGVKSAIIVYIKYKVGNHRVQNTTEDG---ERLAMFVA
C7 QRAGRSLNARSNTGWAFYVRSKNGDYSAVTSGVESITEEEKVLHLV
C8 QRAGRSLNTRSQTGWAFYVRSKNGDYSAVTSHSDSVTDEEKVLHLV
C9 QRAGRSLNTRSNTGWAFYVRSKNGDYSAVASHSDSLTEDEKVLHLV
C10 QRAGRSLNTRSNTGWAFYVRSKNGDYSAVASHSDSLTEDEKVLHLV
C11 YKRALTRNIGTRSAILVYIKYKVGNHRVQNTTEDG---DRLAMFAA
C12 YKKALTRTVGPKSGVVVYIKFKVGNHRVQNANDDD---GQLAMFLA
C13 YKKALTRTVGPKSGVVVYIKFKVGNHRVQNANDDD---GQLAMFLA
C14 LKMVKRQSYGTNSGVAIFHRYKAGNYRWPTIIQDE----ELALLRA
C15 YKKALTRTVGPKSGVVVYIKFKVGNHRVQNANDDD---GQLAMFLA
C16 YKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHSGS--NDNIALLVQ
C17 YKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHSGS--NDNIALLVQ
C18 LKMVKRQSYGTNSGVAIYHRYKAGNYRSPPITADS----ELALLRA
C19 LKMVKRQDYGTNSGVAIYHRYKAGNYRRPAIVPDA----ELALLRA
: :. : : *:: . :
-- Starting log on Thu Oct 27 00:04:14 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.17 sec, SCORE=930, Nseq=19, Len=246
C1 -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWI
C2 -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWI
C3 -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWI
C4 ------------------MSGSNHTVPVGEVLEHLRNWSFAWNIILTVLI
C5 ------------------MSGSNQTVPVGEVLEHLRNWSFAWNIILTVLI
C6 ------------------MTESNATLPKAEVLAAVRDWNFTLSLFLLFIT
C7 MNIFCLLCVMALVPYTFADSSTNNSIPVDQVVEHLRNWNFSWNIILTVFL
C8 -------------------MTDNGTISVEQVVAHLRNWNFSWNVILTVFL
C9 -----------------MSNSTSGTIPVEQVVEHLRNWNFSWNVILTIFL
C10 -----------------MSNSTSGTIPVEQVVEHLRNWNFSWNVILTIFL
C11 ----------------MSGECNNNTVSRTEVIAALKDWNFAVSVLLLFIT
C12 ------------------MSSSNSTFSKEEVFKAVKDWNFAVAILLLFVT
C13 ------------------MSSSNSTFSKEEVFKAVKDWNFAVAILLLFVT
C14 -------------------MSSNGSLTKDEVVNIIKDWNFSWSIIFLLIT
C15 ------------------MSSDNSTFSKEEVFKAVRDWNFAVAILLLFVT
C16 -------------------MADNGTISVEELKRLLEQWNLVIGFLFLAWI
C17 -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWI
C18 -------------------MSNMTQLTEQQIISIIKDWNFAWSLIFLLIT
C19 --------------------MSNSSLTNEQIVSIIKDWNFAWSIIFLLIT
.. :: :.:*.: .::
C1 MLLQFAYSNRNRLLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGI
C2 MLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGI
C3 MLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGI
C4 VMLQYGNFKYSKILYGIKMAVLWLLWPCVIALSVTNAWADFNVNWAYFGI
C5 VMLQYGNFKYSKILYGIKMAVLWLLWPCVIALSVTNAWADFNVNWAYFGI
C6 ILLQWGYPSRCKPLWVVKMCILWLLWPLSIAAAVFAAV--YPINQVAFGF
C7 VVLQYGQYKYSVVLYVLKMLVLWLLWPLVLALSIFDAVVSFGDNWTYFAF
C8 IVLQYGHYKYSVVLYSLKMMILWLLWPLVLALSIFDSWASFGVNWTFFAF
C9 IVLQYGQYKYSVVLYGLKMLILWLLWPLVLALSIFDSWASFGVNWTFFAF
C10 IVLQYGQYKYSVVLYGLKMLILWLLWPLVLALSIFDSWASFGVNWTFFAF
C11 VLLQWGYPSRCKPIWVIKMFILWLLWPLSIAAAVFAAI--HPINSVSFGF
C12 ILLQWGYPSRVKAIWVVKMFILWLLWPVSIAASVFAAV--YPINKVAFGF
C13 ILLQWGYPSRVKAIWVVKMFILWLLWPVSIAASVFAAV--YPINKVAFGF
C14 IVLQYGYPSRSMTVYVFKMFILWLLWPASMALSIFSAI--YPISLASQII
C15 ILLQWGYPSRIKAIWVVKMFILWLLWPVSIAASVFAAV--YPINKVAFGF
C16 MLLQFAYSNRNRLLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGI
C17 MLLQFAYSNRNRLLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGI
C18 IVLQYGYPSRSMTVYVFKMFVLWLLWPSSMALSIFSAV--YPIDLASQII
C19 IVLQYGYPSRSMTVYVFKMFVLWLLWPASMALSIFSAI--YPVDLSTQII
::**:. . :: .*: .****** :* : : . . :
C1 AIAMACIVGLMWLSYFFASFRLFARTRSMWSFNPETNILLNVPLRGTIVT
C2 AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVT
C3 AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVT
C4 SIFMLVVTLVLWIMYFLNSFRLYRRTRSFWAFNPETDSIIVFSVYGTTYS
C5 SIFMLVVTLVLWIMYFLNSFRLYRRTRSFWAFNPETDSIIVFSVYGTTYS
C6 AIAFACISGLMWLCYFISSFRLLCRTGSAWSFMPETDMLLNVPLLGRTVT
C7 SILMACITFVLWIMYFANSFRLYRRTNSFWAFNPETDAIITLSVLGRQVS
C8 SILMCCITFILWVMYFVNSFRLYRRTQTFWAFNPETDAIMTLSVLGRQVS
C9 SILMSCLTLILWMMYFINSFRLYRRTQTFWAFNPETDAIITLSVFGRQVS
C10 SILMSCITLILWMMYFINSFRLYRRTQTFWAFNPETDAIITLSVFGRQVS
C11 AIAFACISGIMWLSYFISSFRLLCRTGSAWSFMPETDMLINIPLLGRTVT
C12 AIAFACITALMWLSYFVSSLRLLCRTGSWWAFMPETNMLLNVPFIGRTVT
C13 AIAFACITALMWLSYFVSSLRLLCRTGSWWAFMPETNMLLNVPFIGRTVT
C14 SGILAAACAGMWLAYFIQSIRLFMRTGSWWSFNPESNCLLNVPIGGTTVV
C15 AIAFACITALMWLSYFVSSLRLLCRTGSWWAFMPETNMLLNVPFIGRTVT
C16 AIAMACIVGLMWLSYFFASFRLFARTRSMWSFNPETNILLNVPLRGTIVT
C17 AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVT
C18 SGIIAGVSALMWISYFVQSIRLFMRTGSWWSFNPETNCLLNVPLGGTTVV
C19 SGIIAFISACMWISYFVQSIRLFMRTGSWWSFNPETNCLLNVPIGGTTVV
: : :*: ** *:** ** : *:* **:: :: ... *
C1 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSY
C2 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSY
C3 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSY
C4 IPVIQAPQGITFTILSGTLLVDGIKIATAVRIDALPQYVTVAKATTTIVF
C5 IPVIQAPQGITFTILSGTLLVDGIKIATAVRIDALPQYVTVAKATTTIVF
C6 RPILADSPAIQFLLVRGEIQFEGFKLGR-CDPGDMPDIVTVAKPA-SLHW
C7 IPIIVAPTGITLTCLNGTLLVEGIKVATGVQVSQLPTYITVAKPTTTIVY
C8 IPVIVAPTGITLTVLSGTLLMEGIKVATGVQVNQLPSYITVAKPTTTIIY
C9 IPTIVAPTGITLTVLSGTLLVEGIKVATGVQVSQLPTYITVAKPSTTIVY
C10 IPTIVAPTGITLTVLSGTLLVEGIKVATGVQVSQLPTYITVAKPSTTIVY
C11 RPIIADSPAVQFLIIRGELRFDGFTLGR-CDPNDMPDIVTIARPN-SLHW
C12 RPILNDSAALQFFILRGQVQFEGFVLGK-CAPTEMPEVVTVAKAG-SLVW
C13 RPILNDSAALQFFILRGQVQFEGFVLGK-CAPTEMPEVVTVAKAG-SLVW
C14 RPLVEDSTSVTAVVNDGHLKMAGMHFGR-CDYDRLPMEITVAKPS-VLIA
C15 RPILNDSAALQFFVLRGQVQFDGFILGK-CAPQEMPEVVTVAKAS-SLVW
C16 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSY
C17 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSY
C18 RPLVEDSTSVTAVVANGYLKMAGMHFGA-CDYDRLPSEVTVAKPN-VLIA
C19 RPLVEDSTSVTAVVTNGYLKIAGMHFGQ-CDYRSLPNEVTVAKPN-VLIA
* : : * : . * .. :* :*:* . :
C1 YKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHSGS--NDNIALLVQ
C2 YKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHAGS--NDNIALLVQ
C3 YKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHAGS--NDNIALLVQ
C4 HRVGKAVNERTQTGWLFFVRSGYGDYAAHSTGTGQMTESEKLLHIA
C5 HRVGKAVNERTQTGWLFFVRSGYGDYAAHSTGTGQMTESEKLLHIA
C6 YKKALTRNIGVKSAIIVYIKYKVGNHRVQNTTEDG---ERLAMFVA
C7 QRAGRSLNARSNTGWAFYVRSKNGDYSAVTSGVESITEEEKVLHLV
C8 QRAGRSLNTRSQTGWAFYVRSKNGDYSAVTSHSDSVTDEEKVLHLV
C9 QRAGRSLNTRSNTGWAFYVRSKNGDYSAVASHSDSLTEDEKVLHLV
C10 QRAGRSLNTRSNTGWAFYVRSKNGDYSAVASHSDSLTEDEKVLHLV
C11 YKRALTRNIGTRSAILVYIKYKVGNHRVQNTTEDG---DRLAMFAA
C12 YKKALTRTVGPKSGVVVYIKFKVGNHRVQNANDDD---GQLAMFLA
C13 YKKALTRTVGPKSGVVVYIKFKVGNHRVQNANDDD---GQLAMFLA
C14 LKMVKRQSYGTNSGVAIFHRYKAGNYRWPTIIQDE----ELALLRA
C15 YKKALTRTVGPKSGVVVYIKFKVGNHRVQNANDDD---GQLAMFLA
C16 YKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHSGS--NDNIALLVQ
C17 YKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHSGS--NDNIALLVQ
C18 LKMVKRQSYGTNSGVAIYHRYKAGNYRSPPITADS----ELALLRA
C19 LKMVKRQDYGTNSGVAIYHRYKAGNYRRPAIVPDA----ELALLRA
: :. : : *:: . :
-- Starting log on Thu Oct 27 00:12:22 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus.result/gapped_alignment/codeml,JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 19 taxa and 738 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C1
Taxon 2 -> C10
Taxon 3 -> C11
Taxon 4 -> C12
Taxon 5 -> C13
Taxon 6 -> C14
Taxon 7 -> C15
Taxon 8 -> C16
Taxon 9 -> C17
Taxon 10 -> C18
Taxon 11 -> C19
Taxon 12 -> C2
Taxon 13 -> C3
Taxon 14 -> C4
Taxon 15 -> C5
Taxon 16 -> C6
Taxon 17 -> C7
Taxon 18 -> C8
Taxon 19 -> C9
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1666829548
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 620457994
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 2960553102
Seed = 836363431
Swapseed = 1666829548
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 183 unique site patterns
Division 2 has 134 unique site patterns
Division 3 has 213 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -17323.454646 -- 59.622190
Chain 2 -- -16889.478701 -- 59.622190
Chain 3 -- -17059.537578 -- 59.622190
Chain 4 -- -16535.437089 -- 59.622190
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -16721.515322 -- 59.622190
Chain 2 -- -16793.870377 -- 59.622190
Chain 3 -- -17170.451530 -- 59.622190
Chain 4 -- -16877.750676 -- 59.622190
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-17323.455] (-16889.479) (-17059.538) (-16535.437) * [-16721.515] (-16793.870) (-17170.452) (-16877.751)
1000 -- (-7045.017) [-6998.851] (-7027.724) (-6999.040) * (-7050.708) (-7085.944) (-7147.365) [-7022.011] -- 0:33:18
2000 -- (-6930.897) [-6895.685] (-6902.980) (-6922.030) * (-6925.325) (-6932.236) (-6933.422) [-6906.082] -- 0:33:16
3000 -- (-6920.637) [-6891.202] (-6912.833) (-6894.173) * (-6906.568) (-6908.214) (-6901.640) [-6897.547] -- 0:33:14
4000 -- (-6899.696) [-6892.287] (-6899.893) (-6900.506) * (-6906.184) [-6897.906] (-6899.485) (-6891.247) -- 0:33:12
5000 -- (-6892.073) [-6895.223] (-6902.502) (-6893.714) * (-6897.279) (-6896.544) (-6895.199) [-6898.771] -- 0:33:10
Average standard deviation of split frequencies: 0.040992
6000 -- [-6889.100] (-6889.388) (-6894.589) (-6901.065) * (-6893.766) [-6899.715] (-6892.061) (-6893.817) -- 0:33:08
7000 -- (-6893.905) (-6888.941) [-6888.419] (-6896.568) * (-6911.216) (-6899.735) (-6880.881) [-6889.751] -- 0:33:06
8000 -- [-6900.901] (-6901.308) (-6906.290) (-6902.367) * [-6895.611] (-6892.592) (-6904.903) (-6890.695) -- 0:33:04
9000 -- [-6903.349] (-6901.396) (-6894.473) (-6886.787) * (-6901.629) (-6893.800) (-6895.448) [-6891.589] -- 0:33:02
10000 -- [-6889.801] (-6895.133) (-6904.268) (-6904.125) * (-6909.388) [-6896.167] (-6894.472) (-6892.334) -- 0:34:39
Average standard deviation of split frequencies: 0.031567
11000 -- (-6890.005) (-6901.658) [-6891.727] (-6895.444) * [-6896.096] (-6897.884) (-6895.657) (-6898.297) -- 0:34:27
12000 -- (-6895.800) (-6907.142) [-6885.691] (-6901.535) * (-6893.518) [-6883.440] (-6886.646) (-6893.830) -- 0:34:18
13000 -- (-6890.830) [-6895.312] (-6907.617) (-6910.724) * [-6889.931] (-6904.868) (-6902.949) (-6893.915) -- 0:34:09
14000 -- (-6899.464) [-6899.216] (-6882.123) (-6897.186) * [-6883.923] (-6893.181) (-6889.990) (-6903.522) -- 0:34:02
15000 -- [-6888.949] (-6903.484) (-6900.459) (-6893.296) * [-6888.134] (-6901.846) (-6901.015) (-6897.393) -- 0:33:55
Average standard deviation of split frequencies: 0.022448
16000 -- [-6890.497] (-6892.697) (-6892.829) (-6893.471) * [-6888.745] (-6890.251) (-6891.042) (-6906.815) -- 0:33:49
17000 -- (-6900.157) [-6895.378] (-6902.389) (-6890.924) * (-6894.943) (-6890.471) (-6887.228) [-6894.932] -- 0:33:43
18000 -- (-6895.298) [-6893.578] (-6893.293) (-6903.127) * (-6898.450) (-6901.090) [-6885.345] (-6897.421) -- 0:33:38
19000 -- (-6895.637) (-6905.587) (-6890.503) [-6893.956] * (-6903.351) [-6899.558] (-6893.607) (-6883.499) -- 0:33:33
20000 -- [-6887.876] (-6907.098) (-6890.266) (-6896.614) * (-6897.281) (-6901.350) [-6896.702] (-6888.669) -- 0:33:29
Average standard deviation of split frequencies: 0.019388
21000 -- (-6901.360) (-6892.689) [-6888.580] (-6905.003) * [-6900.836] (-6902.196) (-6890.429) (-6893.288) -- 0:33:24
22000 -- (-6893.437) [-6904.623] (-6901.072) (-6885.448) * (-6895.013) (-6907.779) [-6897.824] (-6898.778) -- 0:33:20
23000 -- (-6896.087) (-6898.226) [-6885.734] (-6893.016) * [-6897.704] (-6895.977) (-6892.451) (-6897.098) -- 0:33:16
24000 -- (-6896.569) (-6907.644) (-6894.083) [-6900.124] * [-6900.713] (-6909.408) (-6898.633) (-6901.128) -- 0:33:12
25000 -- [-6893.119] (-6888.629) (-6900.275) (-6902.031) * (-6892.482) (-6909.779) (-6895.043) [-6898.117] -- 0:33:09
Average standard deviation of split frequencies: 0.029669
26000 -- (-6892.311) (-6891.272) [-6883.510] (-6901.627) * [-6886.852] (-6893.464) (-6897.446) (-6902.585) -- 0:33:05
27000 -- (-6890.404) (-6895.301) [-6897.676] (-6894.787) * [-6891.279] (-6909.689) (-6897.071) (-6890.973) -- 0:33:02
28000 -- (-6886.774) [-6898.460] (-6895.312) (-6896.368) * (-6903.581) (-6910.908) (-6906.575) [-6891.919] -- 0:32:58
29000 -- [-6888.883] (-6899.995) (-6891.448) (-6890.418) * (-6899.853) (-6894.393) (-6898.640) [-6891.792] -- 0:32:55
30000 -- [-6892.439] (-6888.927) (-6898.261) (-6896.710) * (-6900.761) (-6903.432) [-6909.007] (-6896.991) -- 0:32:52
Average standard deviation of split frequencies: 0.037731
31000 -- (-6898.166) [-6891.594] (-6904.863) (-6901.513) * (-6905.785) (-6908.198) (-6904.548) [-6899.453] -- 0:32:49
32000 -- (-6893.735) (-6908.030) [-6897.212] (-6893.013) * [-6891.063] (-6893.923) (-6901.380) (-6900.782) -- 0:32:46
33000 -- (-6908.242) [-6899.429] (-6888.988) (-6893.333) * (-6898.796) (-6903.287) [-6897.562] (-6905.566) -- 0:32:43
34000 -- [-6901.643] (-6901.900) (-6893.172) (-6905.516) * (-6891.371) (-6902.335) [-6894.194] (-6906.333) -- 0:32:40
35000 -- (-6888.358) (-6892.779) (-6900.042) [-6891.345] * (-6893.561) (-6898.268) [-6900.324] (-6894.899) -- 0:33:05
Average standard deviation of split frequencies: 0.034295
36000 -- [-6889.193] (-6895.409) (-6895.835) (-6902.066) * (-6898.912) (-6897.467) (-6897.784) [-6893.276] -- 0:33:01
37000 -- (-6894.425) [-6888.797] (-6892.518) (-6914.532) * (-6895.444) [-6895.397] (-6895.931) (-6903.626) -- 0:32:58
38000 -- (-6898.112) (-6892.426) [-6887.090] (-6892.773) * [-6900.936] (-6904.416) (-6893.127) (-6892.811) -- 0:32:54
39000 -- [-6899.691] (-6894.495) (-6914.560) (-6897.215) * (-6906.270) (-6896.878) [-6891.550] (-6901.320) -- 0:32:51
40000 -- (-6899.932) [-6894.582] (-6901.570) (-6895.783) * (-6902.772) [-6890.451] (-6885.381) (-6893.443) -- 0:32:48
Average standard deviation of split frequencies: 0.028704
41000 -- (-6888.793) (-6896.103) [-6893.600] (-6905.083) * (-6908.358) (-6894.320) [-6892.098] (-6889.884) -- 0:32:44
42000 -- (-6901.746) (-6898.208) [-6897.380] (-6910.527) * (-6892.523) [-6896.088] (-6898.372) (-6891.819) -- 0:32:41
43000 -- (-6891.247) (-6903.967) (-6904.642) [-6889.894] * (-6906.622) [-6905.286] (-6897.709) (-6897.566) -- 0:32:38
44000 -- (-6897.435) (-6904.212) [-6891.202] (-6895.568) * (-6894.587) (-6899.658) [-6888.866] (-6895.410) -- 0:32:35
45000 -- (-6894.571) (-6886.034) (-6901.326) [-6894.394] * (-6898.178) (-6896.838) [-6884.773] (-6894.395) -- 0:32:32
Average standard deviation of split frequencies: 0.029812
46000 -- (-6902.842) [-6887.326] (-6900.181) (-6893.836) * (-6891.573) (-6892.891) [-6901.539] (-6904.410) -- 0:32:29
47000 -- (-6909.559) (-6911.395) [-6897.151] (-6898.697) * (-6893.465) [-6887.677] (-6898.753) (-6898.689) -- 0:32:46
48000 -- (-6899.823) (-6904.844) (-6901.106) [-6895.312] * (-6912.234) (-6886.812) (-6895.342) [-6891.737] -- 0:32:43
49000 -- (-6893.264) (-6889.074) [-6898.529] (-6891.758) * (-6892.373) (-6909.842) (-6893.235) [-6902.264] -- 0:32:40
50000 -- (-6888.433) [-6883.408] (-6897.618) (-6891.850) * [-6900.812] (-6896.416) (-6902.813) (-6892.199) -- 0:32:37
Average standard deviation of split frequencies: 0.031169
51000 -- (-6893.364) (-6898.033) [-6889.687] (-6902.705) * (-6887.263) (-6886.248) [-6894.260] (-6902.287) -- 0:32:33
52000 -- (-6900.592) [-6900.043] (-6886.927) (-6898.177) * (-6892.835) (-6904.182) [-6891.483] (-6880.442) -- 0:32:30
53000 -- (-6897.209) (-6896.778) (-6897.899) [-6894.998] * (-6899.897) [-6893.894] (-6885.312) (-6901.544) -- 0:32:27
54000 -- (-6899.983) [-6897.586] (-6903.575) (-6898.330) * (-6902.273) (-6891.699) [-6890.900] (-6894.959) -- 0:32:24
55000 -- (-6903.377) (-6899.422) [-6886.012] (-6900.549) * (-6897.264) (-6894.627) (-6897.363) [-6897.597] -- 0:32:21
Average standard deviation of split frequencies: 0.024833
56000 -- (-6885.182) (-6899.887) (-6888.081) [-6891.436] * (-6909.733) (-6894.757) (-6893.917) [-6890.836] -- 0:32:18
57000 -- (-6908.417) (-6896.019) [-6896.823] (-6887.112) * [-6889.387] (-6893.022) (-6900.229) (-6890.815) -- 0:32:15
58000 -- [-6883.287] (-6900.249) (-6895.055) (-6901.350) * (-6891.216) [-6905.214] (-6904.142) (-6887.870) -- 0:32:12
59000 -- (-6890.323) (-6921.222) (-6909.187) [-6886.193] * (-6896.157) [-6886.106] (-6888.147) (-6891.657) -- 0:32:09
60000 -- [-6895.342] (-6899.859) (-6904.480) (-6891.398) * (-6904.129) (-6898.434) (-6897.302) [-6891.936] -- 0:32:07
Average standard deviation of split frequencies: 0.025642
61000 -- (-6894.925) [-6891.740] (-6896.469) (-6908.559) * [-6886.986] (-6885.861) (-6896.710) (-6908.388) -- 0:32:04
62000 -- (-6897.043) [-6888.174] (-6905.379) (-6884.595) * [-6891.760] (-6891.936) (-6903.686) (-6896.897) -- 0:32:01
63000 -- (-6901.919) [-6898.504] (-6886.094) (-6890.836) * (-6901.028) (-6897.532) [-6891.538] (-6888.185) -- 0:31:58
64000 -- (-6898.590) (-6888.741) (-6897.840) [-6909.994] * (-6902.406) (-6887.613) (-6886.316) [-6896.218] -- 0:31:55
65000 -- (-6891.654) [-6889.054] (-6894.765) (-6895.769) * (-6904.928) (-6897.245) [-6897.733] (-6902.007) -- 0:31:53
Average standard deviation of split frequencies: 0.023570
66000 -- [-6892.517] (-6894.863) (-6896.130) (-6895.029) * (-6897.557) [-6900.172] (-6890.150) (-6893.483) -- 0:31:50
67000 -- (-6894.962) [-6896.054] (-6900.311) (-6901.727) * (-6898.824) (-6894.648) [-6883.051] (-6908.223) -- 0:31:47
68000 -- (-6895.444) (-6889.470) (-6905.588) [-6892.154] * (-6901.342) (-6889.820) (-6899.467) [-6891.640] -- 0:31:58
69000 -- (-6891.241) (-6891.303) [-6902.950] (-6910.461) * (-6885.733) [-6893.036] (-6898.886) (-6903.210) -- 0:31:55
70000 -- (-6905.963) [-6895.101] (-6897.830) (-6897.392) * (-6893.662) (-6896.272) (-6893.233) [-6897.586] -- 0:31:53
Average standard deviation of split frequencies: 0.023681
71000 -- (-6895.708) [-6887.471] (-6902.845) (-6895.563) * (-6901.793) (-6899.286) (-6894.146) [-6893.792] -- 0:31:50
72000 -- [-6885.117] (-6887.292) (-6890.387) (-6889.656) * (-6885.889) [-6888.699] (-6899.974) (-6895.450) -- 0:31:47
73000 -- (-6900.596) [-6891.608] (-6900.300) (-6882.338) * (-6890.577) (-6899.279) [-6891.465] (-6892.766) -- 0:31:44
74000 -- (-6895.129) (-6886.082) (-6904.801) [-6886.620] * (-6904.733) [-6892.880] (-6900.822) (-6895.671) -- 0:31:42
75000 -- [-6884.507] (-6895.440) (-6888.800) (-6889.650) * [-6887.058] (-6908.915) (-6895.050) (-6883.514) -- 0:31:39
Average standard deviation of split frequencies: 0.017678
76000 -- [-6903.757] (-6886.376) (-6897.413) (-6886.090) * (-6898.427) (-6900.961) [-6895.386] (-6891.115) -- 0:31:36
77000 -- (-6890.990) (-6908.548) (-6893.728) [-6890.588] * (-6887.859) (-6894.793) [-6893.159] (-6906.858) -- 0:31:33
78000 -- (-6896.315) (-6898.820) [-6896.784] (-6900.932) * [-6897.960] (-6910.570) (-6896.194) (-6901.475) -- 0:31:31
79000 -- (-6897.291) (-6896.752) (-6895.166) [-6898.818] * (-6899.333) (-6900.844) [-6896.763] (-6897.607) -- 0:31:28
80000 -- (-6908.525) [-6885.320] (-6895.519) (-6893.971) * (-6888.294) [-6887.747] (-6901.269) (-6899.817) -- 0:31:26
Average standard deviation of split frequencies: 0.015778
81000 -- (-6899.603) [-6896.080] (-6912.065) (-6899.378) * [-6890.721] (-6899.090) (-6904.660) (-6900.513) -- 0:31:23
82000 -- (-6897.486) (-6896.306) [-6893.879] (-6904.150) * (-6894.899) (-6886.878) [-6902.298] (-6905.659) -- 0:31:20
83000 -- [-6885.208] (-6903.519) (-6893.233) (-6893.715) * (-6907.395) [-6884.012] (-6898.216) (-6897.891) -- 0:31:18
84000 -- (-6893.194) (-6901.073) [-6887.433] (-6888.727) * (-6899.036) (-6901.013) [-6887.877] (-6900.063) -- 0:31:15
85000 -- (-6898.572) (-6913.031) (-6899.232) [-6887.932] * (-6896.137) (-6891.689) [-6892.894] (-6898.508) -- 0:31:13
Average standard deviation of split frequencies: 0.010689
86000 -- (-6892.536) (-6895.167) (-6893.620) [-6893.522] * (-6893.331) (-6894.059) [-6891.897] (-6895.249) -- 0:31:10
87000 -- [-6887.261] (-6897.373) (-6897.103) (-6898.002) * (-6902.764) (-6893.398) (-6906.112) [-6885.132] -- 0:31:07
88000 -- (-6888.740) [-6901.897] (-6901.976) (-6889.286) * (-6900.977) [-6893.420] (-6893.619) (-6907.105) -- 0:31:15
89000 -- (-6907.661) (-6909.109) [-6900.606] (-6895.232) * (-6890.807) (-6891.772) [-6894.447] (-6909.827) -- 0:31:13
90000 -- [-6889.147] (-6892.103) (-6919.995) (-6902.388) * [-6891.024] (-6898.017) (-6903.215) (-6900.166) -- 0:31:10
Average standard deviation of split frequencies: 0.010139
91000 -- [-6886.697] (-6892.423) (-6899.517) (-6896.867) * (-6899.595) (-6899.604) (-6895.437) [-6892.967] -- 0:31:07
92000 -- (-6902.898) (-6898.718) [-6897.451] (-6895.541) * (-6899.923) (-6901.288) (-6898.475) [-6885.972] -- 0:31:05
93000 -- (-6890.813) (-6899.046) (-6896.788) [-6895.272] * (-6903.145) (-6903.361) [-6892.233] (-6901.855) -- 0:31:02
94000 -- (-6893.005) [-6891.317] (-6892.828) (-6890.173) * [-6890.232] (-6890.440) (-6900.871) (-6905.341) -- 0:31:00
95000 -- (-6895.554) (-6892.936) [-6889.972] (-6900.691) * (-6897.397) [-6888.151] (-6893.997) (-6895.680) -- 0:30:57
Average standard deviation of split frequencies: 0.009330
96000 -- (-6896.011) [-6886.693] (-6899.280) (-6898.252) * (-6898.014) [-6891.834] (-6896.089) (-6895.759) -- 0:30:55
97000 -- [-6906.267] (-6888.886) (-6891.896) (-6901.241) * (-6909.561) (-6892.879) [-6895.656] (-6891.161) -- 0:30:52
98000 -- (-6904.089) [-6888.045] (-6897.622) (-6895.276) * (-6892.629) (-6892.450) [-6899.626] (-6895.143) -- 0:30:50
99000 -- (-6901.181) (-6891.816) (-6891.481) [-6883.970] * [-6888.978] (-6897.202) (-6887.695) (-6904.476) -- 0:30:47
100000 -- (-6891.831) (-6893.220) [-6894.398] (-6900.774) * (-6888.965) (-6903.758) (-6882.747) [-6885.548] -- 0:30:45
Average standard deviation of split frequencies: 0.007024
101000 -- [-6890.535] (-6898.711) (-6893.241) (-6894.768) * (-6897.029) (-6894.665) (-6889.338) [-6889.353] -- 0:30:42
102000 -- [-6895.898] (-6889.006) (-6906.108) (-6901.008) * (-6887.300) [-6885.360] (-6893.349) (-6894.011) -- 0:30:40
103000 -- (-6896.867) (-6889.739) (-6894.506) [-6896.371] * [-6885.053] (-6886.723) (-6892.532) (-6896.306) -- 0:30:46
104000 -- (-6894.354) (-6895.130) (-6900.235) [-6895.704] * (-6888.182) [-6902.156] (-6891.382) (-6888.324) -- 0:30:43
105000 -- (-6899.699) (-6892.754) (-6889.864) [-6890.807] * (-6900.176) (-6897.935) (-6906.660) [-6892.274] -- 0:30:41
Average standard deviation of split frequencies: 0.007560
106000 -- (-6897.712) (-6889.152) (-6907.277) [-6887.048] * (-6892.019) [-6894.347] (-6899.742) (-6904.002) -- 0:30:38
107000 -- (-6893.379) [-6882.431] (-6909.210) (-6889.755) * (-6892.213) (-6897.327) [-6886.881] (-6918.547) -- 0:30:36
108000 -- (-6896.516) [-6887.223] (-6895.225) (-6893.500) * (-6890.350) (-6896.577) [-6887.290] (-6897.434) -- 0:30:33
109000 -- (-6898.659) (-6903.313) [-6887.218] (-6900.682) * (-6887.556) [-6895.024] (-6885.059) (-6902.571) -- 0:30:31
110000 -- (-6899.195) (-6898.944) [-6888.937] (-6892.859) * (-6904.541) (-6888.661) (-6894.486) [-6898.236] -- 0:30:28
Average standard deviation of split frequencies: 0.008732
111000 -- (-6913.723) [-6893.080] (-6890.095) (-6889.680) * (-6880.552) (-6889.260) (-6904.269) [-6887.907] -- 0:30:26
112000 -- (-6900.617) [-6886.151] (-6900.820) (-6899.078) * [-6888.340] (-6889.544) (-6910.129) (-6904.410) -- 0:30:23
113000 -- (-6904.344) (-6889.626) [-6891.252] (-6900.297) * (-6911.862) (-6897.109) [-6891.016] (-6904.128) -- 0:30:21
114000 -- (-6891.746) (-6891.116) (-6895.452) [-6890.779] * (-6891.201) (-6903.827) [-6894.057] (-6894.340) -- 0:30:18
115000 -- (-6890.719) [-6906.475] (-6893.769) (-6904.255) * (-6887.424) (-6895.411) [-6901.155] (-6892.019) -- 0:30:16
Average standard deviation of split frequencies: 0.008331
116000 -- (-6886.723) [-6906.852] (-6899.061) (-6888.206) * (-6905.097) (-6901.380) (-6892.334) [-6878.847] -- 0:30:13
117000 -- (-6893.900) [-6892.909] (-6894.144) (-6893.159) * (-6907.910) [-6894.776] (-6895.017) (-6902.453) -- 0:30:11
118000 -- [-6888.499] (-6911.954) (-6898.166) (-6891.514) * [-6897.341] (-6894.309) (-6909.699) (-6904.074) -- 0:30:08
119000 -- (-6888.815) [-6890.147] (-6902.791) (-6901.531) * [-6888.177] (-6885.624) (-6884.949) (-6908.965) -- 0:30:06
120000 -- [-6889.356] (-6898.315) (-6899.029) (-6905.381) * (-6888.407) (-6902.933) (-6895.030) [-6891.091] -- 0:30:04
Average standard deviation of split frequencies: 0.011329
121000 -- (-6904.664) [-6893.954] (-6895.227) (-6896.530) * (-6892.959) [-6889.300] (-6899.301) (-6891.066) -- 0:30:01
122000 -- (-6894.249) (-6891.698) (-6897.456) [-6885.700] * (-6890.920) (-6891.265) [-6885.536] (-6892.338) -- 0:29:59
123000 -- (-6890.324) (-6910.825) [-6897.530] (-6889.382) * [-6887.461] (-6906.927) (-6893.075) (-6889.286) -- 0:29:56
124000 -- (-6885.189) (-6901.819) [-6897.285] (-6904.397) * (-6897.545) [-6903.074] (-6910.893) (-6899.570) -- 0:29:54
125000 -- [-6895.701] (-6901.068) (-6896.773) (-6909.688) * (-6901.382) (-6897.731) (-6899.339) [-6888.815] -- 0:29:52
Average standard deviation of split frequencies: 0.011580
126000 -- (-6897.429) (-6889.664) (-6897.983) [-6904.855] * (-6885.834) (-6903.961) [-6890.596] (-6893.448) -- 0:29:56
127000 -- (-6896.701) [-6883.443] (-6899.963) (-6892.257) * [-6885.295] (-6891.295) (-6888.846) (-6900.737) -- 0:29:54
128000 -- (-6895.108) (-6902.122) (-6893.736) [-6894.677] * (-6895.653) (-6897.445) (-6887.254) [-6886.090] -- 0:29:51
129000 -- [-6897.225] (-6887.022) (-6895.331) (-6906.956) * [-6897.128] (-6901.225) (-6896.323) (-6893.366) -- 0:29:49
130000 -- [-6896.142] (-6895.802) (-6890.458) (-6897.181) * (-6889.156) (-6912.539) (-6893.046) [-6880.118] -- 0:29:46
Average standard deviation of split frequencies: 0.012086
131000 -- [-6893.015] (-6907.205) (-6887.530) (-6889.666) * (-6894.858) (-6912.997) [-6893.764] (-6890.621) -- 0:29:44
132000 -- (-6899.160) (-6899.467) [-6887.132] (-6892.833) * (-6896.765) (-6893.271) (-6893.864) [-6890.013] -- 0:29:42
133000 -- (-6898.225) (-6899.870) [-6890.452] (-6885.193) * (-6889.902) (-6899.807) [-6895.301] (-6885.485) -- 0:29:39
134000 -- (-6899.387) (-6899.009) [-6900.285] (-6893.543) * [-6886.096] (-6883.964) (-6892.444) (-6890.068) -- 0:29:37
135000 -- (-6903.849) (-6916.481) [-6891.083] (-6896.533) * (-6893.112) [-6887.442] (-6883.173) (-6888.073) -- 0:29:34
Average standard deviation of split frequencies: 0.012998
136000 -- [-6890.277] (-6884.589) (-6888.983) (-6895.930) * (-6893.013) [-6888.497] (-6890.352) (-6892.436) -- 0:29:32
137000 -- (-6895.967) (-6897.993) (-6906.446) [-6889.390] * (-6905.296) (-6901.836) (-6893.215) [-6904.958] -- 0:29:30
138000 -- [-6894.698] (-6894.693) (-6898.252) (-6895.886) * (-6901.962) (-6899.367) [-6893.413] (-6886.012) -- 0:29:27
139000 -- (-6898.593) (-6896.553) [-6899.378] (-6891.763) * (-6902.363) (-6905.562) [-6884.671] (-6897.298) -- 0:29:25
140000 -- (-6898.307) (-6907.331) [-6892.882] (-6898.005) * (-6904.623) (-6913.608) (-6896.143) [-6897.810] -- 0:29:23
Average standard deviation of split frequencies: 0.013405
141000 -- (-6898.559) (-6903.580) [-6891.106] (-6894.967) * [-6884.304] (-6894.675) (-6895.274) (-6899.098) -- 0:29:20
142000 -- (-6881.932) (-6905.217) [-6892.744] (-6904.970) * [-6886.160] (-6894.169) (-6897.061) (-6901.432) -- 0:29:18
143000 -- (-6888.347) (-6896.729) (-6898.102) [-6900.344] * (-6895.182) (-6893.988) [-6893.689] (-6909.782) -- 0:29:15
144000 -- (-6915.368) (-6893.320) (-6895.459) [-6897.999] * (-6892.857) [-6886.581] (-6898.132) (-6902.188) -- 0:29:19
145000 -- (-6897.875) (-6897.718) (-6897.355) [-6891.601] * (-6894.193) [-6886.210] (-6896.859) (-6885.298) -- 0:29:17
Average standard deviation of split frequencies: 0.013530
146000 -- (-6889.785) [-6887.322] (-6898.628) (-6893.421) * (-6903.980) [-6903.133] (-6899.170) (-6896.098) -- 0:29:14
147000 -- (-6902.556) [-6892.605] (-6900.656) (-6892.692) * [-6891.421] (-6893.966) (-6892.502) (-6902.167) -- 0:29:12
148000 -- [-6893.712] (-6894.613) (-6893.506) (-6910.505) * (-6887.679) (-6890.009) (-6892.613) [-6899.214] -- 0:29:10
149000 -- [-6899.709] (-6903.989) (-6892.118) (-6889.199) * (-6905.247) (-6887.965) [-6895.701] (-6893.512) -- 0:29:07
150000 -- [-6893.924] (-6907.461) (-6891.978) (-6890.595) * (-6899.976) (-6899.872) (-6894.831) [-6890.175] -- 0:29:05
Average standard deviation of split frequencies: 0.014236
151000 -- [-6889.787] (-6902.004) (-6892.065) (-6912.375) * (-6890.109) (-6898.151) (-6882.807) [-6887.595] -- 0:29:02
152000 -- [-6908.656] (-6905.764) (-6896.168) (-6905.088) * (-6892.586) (-6894.822) [-6893.968] (-6889.165) -- 0:29:00
153000 -- [-6886.312] (-6901.912) (-6895.890) (-6900.049) * (-6901.808) [-6889.035] (-6881.938) (-6914.548) -- 0:28:58
154000 -- (-6898.654) [-6889.897] (-6902.856) (-6897.807) * (-6889.550) (-6901.232) [-6888.613] (-6894.720) -- 0:28:55
155000 -- [-6894.393] (-6890.652) (-6892.002) (-6888.447) * (-6888.289) (-6913.888) [-6890.077] (-6883.707) -- 0:28:53
Average standard deviation of split frequencies: 0.017555
156000 -- (-6893.304) (-6890.984) [-6885.889] (-6893.849) * (-6901.080) (-6903.862) [-6887.080] (-6889.257) -- 0:28:51
157000 -- (-6894.621) (-6892.520) [-6893.083] (-6903.442) * (-6890.127) [-6893.304] (-6908.929) (-6892.822) -- 0:28:48
158000 -- (-6888.623) (-6893.765) [-6900.140] (-6894.789) * (-6893.272) [-6882.022] (-6895.305) (-6899.511) -- 0:28:46
159000 -- (-6886.388) [-6891.156] (-6902.431) (-6888.634) * (-6918.626) (-6888.659) (-6893.768) [-6893.594] -- 0:28:44
160000 -- (-6895.596) (-6891.326) (-6899.968) [-6892.842] * (-6908.580) (-6889.998) (-6917.546) [-6892.269] -- 0:28:42
Average standard deviation of split frequencies: 0.015257
161000 -- (-6897.894) (-6900.809) [-6887.434] (-6897.098) * (-6896.080) (-6897.308) (-6889.567) [-6893.437] -- 0:28:39
162000 -- (-6905.221) (-6888.308) [-6884.761] (-6888.819) * (-6900.433) [-6894.173] (-6910.621) (-6904.023) -- 0:28:37
163000 -- (-6886.486) [-6888.329] (-6890.679) (-6892.865) * (-6885.499) (-6889.152) [-6892.639] (-6912.749) -- 0:28:35
164000 -- [-6885.045] (-6893.280) (-6891.530) (-6892.528) * [-6882.311] (-6895.052) (-6888.883) (-6890.457) -- 0:28:32
165000 -- (-6889.463) (-6890.579) (-6905.251) [-6891.388] * (-6905.993) (-6897.730) [-6894.785] (-6904.221) -- 0:28:35
Average standard deviation of split frequencies: 0.015193
166000 -- [-6885.408] (-6897.205) (-6899.136) (-6899.546) * (-6895.660) (-6904.967) [-6891.265] (-6892.454) -- 0:28:33
167000 -- [-6889.419] (-6887.418) (-6903.472) (-6891.981) * (-6895.758) (-6893.399) [-6887.526] (-6901.325) -- 0:28:30
168000 -- (-6913.842) [-6893.682] (-6888.334) (-6890.387) * (-6894.116) (-6904.711) (-6885.272) [-6897.375] -- 0:28:28
169000 -- (-6896.147) (-6883.732) [-6895.432] (-6908.145) * (-6897.780) (-6903.290) (-6896.073) [-6893.521] -- 0:28:26
170000 -- (-6894.580) (-6901.637) [-6903.077] (-6904.854) * (-6898.548) [-6902.751] (-6885.943) (-6915.845) -- 0:28:23
Average standard deviation of split frequencies: 0.012568
171000 -- [-6895.310] (-6890.328) (-6892.049) (-6901.553) * [-6886.228] (-6889.611) (-6898.753) (-6917.849) -- 0:28:21
172000 -- [-6896.825] (-6904.275) (-6899.852) (-6895.051) * (-6897.798) (-6896.062) (-6885.093) [-6898.226] -- 0:28:19
173000 -- (-6908.470) (-6890.244) [-6902.096] (-6897.775) * (-6905.364) (-6894.098) [-6898.349] (-6894.766) -- 0:28:17
174000 -- (-6910.817) (-6894.721) [-6897.430] (-6901.784) * [-6889.730] (-6899.011) (-6896.590) (-6896.989) -- 0:28:14
175000 -- [-6893.874] (-6894.423) (-6898.213) (-6891.043) * [-6896.219] (-6898.939) (-6886.089) (-6911.168) -- 0:28:12
Average standard deviation of split frequencies: 0.010714
176000 -- [-6887.927] (-6899.174) (-6891.646) (-6895.924) * [-6900.160] (-6897.451) (-6899.135) (-6893.537) -- 0:28:10
177000 -- (-6894.197) (-6897.135) [-6897.610] (-6904.438) * (-6894.714) (-6892.188) [-6888.442] (-6894.558) -- 0:28:07
178000 -- (-6896.882) (-6895.205) (-6892.443) [-6900.367] * [-6890.555] (-6893.711) (-6896.139) (-6888.976) -- 0:28:05
179000 -- [-6897.190] (-6892.354) (-6887.867) (-6896.952) * (-6895.246) (-6904.629) [-6891.873] (-6898.001) -- 0:28:03
180000 -- [-6898.874] (-6888.043) (-6898.259) (-6901.410) * (-6900.439) (-6903.428) [-6890.504] (-6894.260) -- 0:28:01
Average standard deviation of split frequencies: 0.010567
181000 -- [-6893.103] (-6890.846) (-6910.543) (-6901.781) * [-6892.696] (-6893.502) (-6894.325) (-6890.055) -- 0:27:58
182000 -- [-6882.683] (-6891.917) (-6898.284) (-6898.506) * (-6907.447) [-6897.887] (-6890.517) (-6890.527) -- 0:27:56
183000 -- [-6892.805] (-6882.550) (-6904.736) (-6892.235) * (-6894.829) (-6901.335) [-6894.553] (-6884.164) -- 0:27:58
184000 -- (-6898.779) (-6894.763) (-6899.947) [-6892.170] * (-6886.772) (-6898.296) [-6890.445] (-6889.236) -- 0:27:56
185000 -- (-6899.319) (-6886.728) (-6899.867) [-6895.825] * (-6892.309) (-6898.846) [-6886.941] (-6889.144) -- 0:27:54
Average standard deviation of split frequencies: 0.010138
186000 -- (-6904.896) (-6890.335) (-6905.123) [-6889.996] * (-6884.906) (-6894.755) [-6895.586] (-6904.456) -- 0:27:51
187000 -- (-6885.729) [-6887.978] (-6904.802) (-6899.254) * (-6900.163) [-6896.027] (-6888.633) (-6889.864) -- 0:27:49
188000 -- (-6897.116) (-6906.040) [-6896.016] (-6910.058) * (-6886.380) (-6911.735) [-6890.252] (-6896.114) -- 0:27:47
189000 -- [-6895.713] (-6899.026) (-6899.043) (-6902.034) * [-6888.038] (-6912.464) (-6895.614) (-6905.115) -- 0:27:44
190000 -- (-6892.941) (-6896.026) [-6893.429] (-6899.110) * (-6892.643) [-6897.795] (-6898.591) (-6893.771) -- 0:27:42
Average standard deviation of split frequencies: 0.009519
191000 -- (-6894.624) [-6893.088] (-6898.792) (-6902.843) * (-6898.465) (-6903.198) [-6883.408] (-6894.827) -- 0:27:40
192000 -- [-6885.352] (-6890.903) (-6888.961) (-6904.889) * (-6893.946) (-6888.872) [-6884.051] (-6896.598) -- 0:27:38
193000 -- (-6890.887) (-6900.491) [-6884.670] (-6887.826) * (-6887.963) [-6892.763] (-6889.721) (-6892.750) -- 0:27:35
194000 -- (-6893.207) (-6893.145) [-6893.712] (-6896.655) * [-6895.075] (-6898.555) (-6891.542) (-6896.789) -- 0:27:33
195000 -- (-6902.627) (-6883.592) [-6899.708] (-6907.972) * [-6900.514] (-6890.607) (-6892.277) (-6903.607) -- 0:27:31
Average standard deviation of split frequencies: 0.010342
196000 -- [-6887.967] (-6897.831) (-6901.346) (-6898.731) * [-6893.459] (-6894.000) (-6895.729) (-6895.789) -- 0:27:29
197000 -- [-6903.738] (-6902.254) (-6894.899) (-6899.985) * (-6899.578) [-6897.189] (-6897.963) (-6897.097) -- 0:27:26
198000 -- [-6898.667] (-6899.056) (-6889.852) (-6898.526) * (-6909.294) (-6902.220) [-6889.951] (-6912.238) -- 0:27:24
199000 -- (-6895.028) (-6898.486) (-6885.875) [-6903.427] * (-6904.650) (-6890.628) [-6893.220] (-6895.656) -- 0:27:22
200000 -- (-6899.494) (-6898.954) (-6895.855) [-6889.149] * (-6892.740) (-6905.601) (-6898.542) [-6905.724] -- 0:27:20
Average standard deviation of split frequencies: 0.011863
201000 -- (-6907.686) [-6894.278] (-6901.651) (-6903.544) * [-6894.932] (-6896.783) (-6901.253) (-6903.077) -- 0:27:17
202000 -- (-6890.605) (-6897.041) [-6882.791] (-6897.359) * (-6896.864) [-6895.135] (-6891.507) (-6891.932) -- 0:27:15
203000 -- (-6903.971) (-6897.420) [-6883.210] (-6906.932) * [-6902.118] (-6892.866) (-6892.079) (-6907.227) -- 0:27:13
204000 -- [-6891.406] (-6890.449) (-6903.095) (-6889.701) * (-6910.119) (-6885.467) [-6888.550] (-6897.716) -- 0:27:11
205000 -- (-6895.005) [-6888.376] (-6900.187) (-6887.861) * (-6900.874) [-6896.868] (-6895.475) (-6894.939) -- 0:27:12
Average standard deviation of split frequencies: 0.010298
206000 -- (-6895.562) (-6901.045) [-6890.582] (-6898.854) * (-6891.501) (-6901.577) (-6906.294) [-6889.303] -- 0:27:10
207000 -- (-6896.481) (-6896.751) (-6899.179) [-6894.515] * (-6893.522) (-6896.334) (-6892.144) [-6889.022] -- 0:27:08
208000 -- (-6894.130) [-6887.853] (-6899.604) (-6889.474) * (-6896.031) [-6890.046] (-6900.025) (-6910.784) -- 0:27:05
209000 -- (-6886.977) [-6891.833] (-6894.641) (-6891.747) * [-6892.184] (-6892.050) (-6912.239) (-6898.631) -- 0:27:03
210000 -- (-6896.024) (-6893.504) (-6895.127) [-6895.462] * (-6889.245) (-6884.589) (-6898.245) [-6902.665] -- 0:27:01
Average standard deviation of split frequencies: 0.009734
211000 -- (-6896.916) (-6907.041) (-6901.716) [-6900.584] * [-6893.287] (-6890.495) (-6890.071) (-6900.099) -- 0:26:59
212000 -- (-6895.243) (-6884.931) (-6903.447) [-6896.288] * (-6895.233) (-6889.461) (-6885.857) [-6895.159] -- 0:26:56
213000 -- (-6896.540) [-6895.680] (-6897.081) (-6893.296) * (-6893.872) (-6901.318) (-6896.099) [-6883.075] -- 0:26:54
214000 -- [-6894.514] (-6892.153) (-6897.841) (-6898.352) * (-6901.763) (-6891.687) [-6907.215] (-6899.799) -- 0:26:52
215000 -- [-6890.752] (-6897.812) (-6888.364) (-6897.859) * (-6890.071) [-6888.262] (-6899.836) (-6900.190) -- 0:26:50
Average standard deviation of split frequencies: 0.009712
216000 -- (-6896.163) (-6896.362) (-6887.652) [-6900.083] * (-6896.454) (-6902.805) (-6902.748) [-6899.063] -- 0:26:47
217000 -- (-6896.216) (-6895.616) [-6889.216] (-6904.798) * (-6895.930) (-6900.322) [-6886.592] (-6886.072) -- 0:26:45
218000 -- (-6893.674) (-6885.381) [-6893.827] (-6889.855) * (-6894.841) (-6901.200) [-6883.797] (-6897.281) -- 0:26:43
219000 -- (-6904.686) (-6904.065) [-6890.722] (-6902.018) * (-6900.959) [-6899.984] (-6892.874) (-6900.147) -- 0:26:41
220000 -- (-6904.904) (-6913.893) [-6885.032] (-6905.331) * (-6901.795) (-6892.355) (-6900.260) [-6888.685] -- 0:26:39
Average standard deviation of split frequencies: 0.009400
221000 -- (-6899.530) (-6902.512) [-6889.512] (-6899.112) * [-6890.687] (-6906.356) (-6900.330) (-6898.783) -- 0:26:36
222000 -- (-6903.739) (-6890.450) [-6888.576] (-6891.358) * (-6883.605) (-6904.925) (-6896.213) [-6894.861] -- 0:26:34
223000 -- (-6897.117) (-6891.030) (-6893.156) [-6891.683] * [-6896.555] (-6902.666) (-6896.586) (-6909.254) -- 0:26:32
224000 -- [-6892.243] (-6891.621) (-6895.204) (-6906.374) * (-6894.766) (-6894.641) [-6890.757] (-6898.129) -- 0:26:33
225000 -- [-6890.674] (-6897.431) (-6895.473) (-6897.339) * [-6892.244] (-6902.231) (-6902.853) (-6887.244) -- 0:26:31
Average standard deviation of split frequencies: 0.008969
226000 -- (-6897.493) [-6898.083] (-6902.608) (-6900.789) * [-6896.733] (-6896.991) (-6899.081) (-6902.513) -- 0:26:29
227000 -- (-6905.942) (-6887.937) (-6894.444) [-6895.454] * (-6899.184) (-6888.241) (-6895.957) [-6893.316] -- 0:26:26
228000 -- (-6896.095) (-6896.796) [-6893.232] (-6902.229) * (-6901.216) (-6897.738) (-6896.565) [-6898.146] -- 0:26:24
229000 -- (-6897.544) (-6894.526) [-6887.332] (-6890.719) * (-6897.489) (-6897.037) (-6896.785) [-6902.622] -- 0:26:22
230000 -- (-6916.270) (-6893.932) [-6891.600] (-6896.174) * (-6899.594) [-6900.826] (-6902.885) (-6909.715) -- 0:26:20
Average standard deviation of split frequencies: 0.008583
231000 -- (-6894.853) [-6895.942] (-6892.565) (-6895.778) * [-6897.282] (-6901.519) (-6892.724) (-6913.126) -- 0:26:17
232000 -- [-6886.171] (-6898.444) (-6896.501) (-6902.711) * (-6893.365) (-6897.686) (-6889.513) [-6895.575] -- 0:26:15
233000 -- (-6905.016) (-6904.762) [-6890.836] (-6890.067) * [-6895.768] (-6894.216) (-6906.314) (-6892.077) -- 0:26:13
234000 -- (-6899.264) (-6894.235) [-6891.450] (-6898.701) * [-6899.674] (-6903.416) (-6883.949) (-6899.559) -- 0:26:11
235000 -- (-6901.784) (-6895.255) (-6903.133) [-6890.372] * (-6901.593) (-6892.574) [-6890.695] (-6893.404) -- 0:26:09
Average standard deviation of split frequencies: 0.008389
236000 -- (-6897.588) [-6889.687] (-6887.070) (-6895.382) * (-6917.136) (-6894.292) [-6895.053] (-6889.326) -- 0:26:06
237000 -- (-6895.724) [-6886.160] (-6887.084) (-6893.662) * (-6900.016) (-6905.114) [-6896.048] (-6900.871) -- 0:26:04
238000 -- [-6885.124] (-6903.099) (-6882.786) (-6900.945) * (-6894.886) (-6893.746) [-6894.032] (-6896.757) -- 0:26:02
239000 -- [-6883.598] (-6895.904) (-6906.009) (-6902.473) * (-6895.519) (-6895.925) (-6900.185) [-6895.426] -- 0:26:00
240000 -- (-6892.481) [-6892.630] (-6903.648) (-6901.774) * (-6890.873) (-6898.782) (-6891.479) [-6898.392] -- 0:25:58
Average standard deviation of split frequencies: 0.009206
241000 -- (-6896.885) (-6895.759) [-6899.177] (-6896.507) * (-6892.867) (-6897.676) [-6888.171] (-6902.795) -- 0:25:55
242000 -- (-6903.609) (-6891.532) [-6898.042] (-6894.932) * (-6913.602) [-6893.489] (-6889.491) (-6897.456) -- 0:25:56
243000 -- (-6894.403) (-6890.216) (-6899.444) [-6887.864] * [-6892.431] (-6900.992) (-6899.934) (-6905.141) -- 0:25:54
244000 -- (-6891.837) (-6894.589) [-6898.536] (-6888.031) * [-6895.717] (-6891.494) (-6891.353) (-6898.999) -- 0:25:52
245000 -- [-6885.562] (-6912.794) (-6900.483) (-6896.618) * (-6897.957) (-6899.467) (-6894.651) [-6888.277] -- 0:25:50
Average standard deviation of split frequencies: 0.007761
246000 -- (-6899.327) (-6887.728) [-6894.862] (-6896.351) * (-6887.975) (-6917.665) (-6902.383) [-6899.403] -- 0:25:47
247000 -- (-6894.549) (-6905.593) [-6885.724] (-6897.755) * (-6903.063) (-6907.152) (-6901.525) [-6888.812] -- 0:25:45
248000 -- (-6906.013) (-6905.050) (-6894.021) [-6893.144] * (-6898.343) (-6896.046) (-6903.025) [-6893.246] -- 0:25:43
249000 -- (-6901.748) (-6896.475) [-6889.915] (-6893.018) * (-6894.393) (-6897.318) [-6891.390] (-6902.356) -- 0:25:41
250000 -- (-6900.545) [-6890.449] (-6885.200) (-6895.602) * [-6895.512] (-6892.066) (-6901.965) (-6888.511) -- 0:25:39
Average standard deviation of split frequencies: 0.006300
251000 -- (-6902.016) [-6892.486] (-6896.966) (-6892.585) * (-6900.016) [-6889.706] (-6895.469) (-6910.122) -- 0:25:36
252000 -- (-6908.158) (-6890.497) [-6887.947] (-6895.526) * (-6905.414) (-6899.902) (-6893.723) [-6890.911] -- 0:25:34
253000 -- (-6887.675) (-6896.334) (-6896.427) [-6904.746] * (-6902.397) (-6887.755) [-6895.739] (-6905.147) -- 0:25:32
254000 -- (-6904.796) (-6900.280) (-6899.147) [-6892.341] * (-6898.684) (-6888.396) (-6899.370) [-6899.130] -- 0:25:30
255000 -- (-6898.917) (-6903.789) (-6898.870) [-6896.187] * [-6896.871] (-6891.588) (-6900.714) (-6902.854) -- 0:25:27
Average standard deviation of split frequencies: 0.006721
256000 -- (-6908.627) (-6907.664) [-6893.368] (-6896.577) * (-6899.821) [-6894.082] (-6897.843) (-6888.672) -- 0:25:25
257000 -- (-6898.966) [-6893.401] (-6901.254) (-6895.878) * [-6888.825] (-6907.278) (-6906.295) (-6894.189) -- 0:25:23
258000 -- (-6900.781) (-6902.797) (-6894.505) [-6886.718] * [-6894.648] (-6895.133) (-6907.719) (-6906.678) -- 0:25:21
259000 -- [-6885.861] (-6909.235) (-6893.372) (-6896.970) * (-6897.973) (-6902.892) (-6888.855) [-6899.765] -- 0:25:19
260000 -- (-6896.572) (-6886.020) [-6894.174] (-6898.683) * (-6899.308) [-6886.709] (-6900.544) (-6890.265) -- 0:25:19
Average standard deviation of split frequencies: 0.006330
261000 -- (-6900.059) (-6897.009) [-6887.023] (-6903.914) * [-6897.242] (-6890.939) (-6899.061) (-6891.652) -- 0:25:17
262000 -- (-6887.955) [-6892.856] (-6896.369) (-6895.796) * (-6897.841) (-6888.731) (-6898.510) [-6894.950] -- 0:25:15
263000 -- (-6888.316) (-6894.078) [-6894.901] (-6901.223) * (-6897.448) [-6881.614] (-6901.401) (-6899.610) -- 0:25:13
264000 -- (-6898.024) (-6897.179) (-6898.697) [-6890.462] * (-6894.330) (-6892.145) [-6900.334] (-6896.119) -- 0:25:11
265000 -- (-6913.185) (-6896.071) (-6896.603) [-6895.442] * (-6895.691) (-6884.181) [-6890.838] (-6888.837) -- 0:25:08
Average standard deviation of split frequencies: 0.007177
266000 -- [-6893.282] (-6895.891) (-6896.110) (-6905.155) * (-6902.097) (-6892.189) (-6908.253) [-6890.749] -- 0:25:06
267000 -- (-6893.281) (-6895.202) [-6889.283] (-6906.545) * (-6895.190) (-6888.854) [-6899.942] (-6898.156) -- 0:25:04
268000 -- [-6897.233] (-6905.435) (-6897.031) (-6904.414) * (-6884.642) (-6897.780) (-6894.414) [-6894.872] -- 0:25:02
269000 -- (-6903.350) [-6902.235] (-6894.190) (-6890.466) * [-6891.778] (-6896.380) (-6892.927) (-6891.190) -- 0:25:00
270000 -- (-6915.937) (-6903.708) (-6887.795) [-6889.756] * [-6896.622] (-6898.417) (-6897.103) (-6886.818) -- 0:24:57
Average standard deviation of split frequencies: 0.007141
271000 -- (-6890.179) [-6905.984] (-6891.893) (-6902.908) * (-6893.183) (-6889.911) (-6894.400) [-6887.435] -- 0:24:55
272000 -- (-6891.238) [-6900.869] (-6906.599) (-6892.836) * (-6888.623) (-6899.927) (-6898.043) [-6907.847] -- 0:24:53
273000 -- (-6894.726) [-6894.348] (-6895.812) (-6891.502) * (-6888.499) (-6900.290) (-6894.015) [-6893.022] -- 0:24:51
274000 -- (-6908.012) (-6893.204) (-6894.804) [-6899.130] * [-6890.883] (-6894.944) (-6897.322) (-6897.839) -- 0:24:49
275000 -- (-6897.566) (-6892.975) (-6894.136) [-6885.184] * (-6894.950) [-6888.172] (-6892.934) (-6902.019) -- 0:24:46
Average standard deviation of split frequencies: 0.006747
276000 -- (-6903.509) (-6900.213) [-6889.925] (-6896.667) * (-6895.207) (-6890.997) (-6906.370) [-6886.853] -- 0:24:44
277000 -- (-6912.389) (-6908.966) (-6886.821) [-6897.485] * (-6892.876) (-6909.353) (-6904.668) [-6888.696] -- 0:24:42
278000 -- (-6906.484) (-6888.228) [-6898.332] (-6897.823) * (-6892.610) (-6904.638) (-6908.901) [-6894.701] -- 0:24:40
279000 -- (-6905.115) (-6905.106) [-6892.974] (-6896.805) * (-6897.879) (-6893.829) [-6899.843] (-6901.052) -- 0:24:40
280000 -- (-6894.874) (-6898.959) [-6892.695] (-6902.358) * (-6904.851) [-6892.748] (-6893.560) (-6898.937) -- 0:24:38
Average standard deviation of split frequencies: 0.006970
281000 -- [-6897.979] (-6903.279) (-6897.858) (-6888.923) * [-6887.907] (-6884.231) (-6900.649) (-6892.748) -- 0:24:36
282000 -- (-6889.930) (-6897.469) (-6889.856) [-6893.752] * (-6895.526) (-6891.469) [-6888.137] (-6893.909) -- 0:24:34
283000 -- (-6906.471) [-6889.292] (-6893.577) (-6895.358) * (-6901.334) (-6892.945) [-6897.401] (-6891.636) -- 0:24:32
284000 -- [-6884.453] (-6885.667) (-6886.842) (-6891.959) * (-6895.292) [-6899.408] (-6890.901) (-6895.607) -- 0:24:29
285000 -- (-6896.181) (-6895.915) (-6905.401) [-6892.215] * (-6894.908) [-6892.618] (-6901.941) (-6891.452) -- 0:24:27
Average standard deviation of split frequencies: 0.008489
286000 -- [-6889.271] (-6903.106) (-6898.050) (-6892.238) * (-6901.210) [-6898.121] (-6899.979) (-6891.340) -- 0:24:25
287000 -- (-6899.144) (-6898.768) (-6898.004) [-6886.395] * (-6889.147) [-6883.563] (-6899.881) (-6893.140) -- 0:24:23
288000 -- [-6886.014] (-6898.719) (-6895.128) (-6899.589) * (-6892.723) (-6900.190) (-6895.583) [-6896.157] -- 0:24:21
289000 -- [-6889.510] (-6897.782) (-6898.471) (-6907.727) * [-6907.863] (-6892.273) (-6908.688) (-6888.799) -- 0:24:18
290000 -- [-6891.258] (-6887.216) (-6896.030) (-6899.618) * [-6893.958] (-6918.263) (-6900.108) (-6896.833) -- 0:24:16
Average standard deviation of split frequencies: 0.008839
291000 -- (-6889.676) (-6891.520) [-6888.336] (-6894.600) * (-6883.694) (-6912.293) (-6893.636) [-6896.553] -- 0:24:14
292000 -- (-6890.166) (-6893.143) (-6889.803) [-6891.514] * (-6895.399) (-6895.646) (-6885.623) [-6897.565] -- 0:24:12
293000 -- [-6896.962] (-6896.157) (-6897.410) (-6902.180) * (-6888.470) [-6892.614] (-6895.337) (-6896.607) -- 0:24:10
294000 -- (-6903.227) (-6890.712) [-6891.628] (-6902.259) * [-6890.596] (-6897.522) (-6899.548) (-6898.405) -- 0:24:08
295000 -- (-6888.805) (-6887.711) [-6897.541] (-6902.001) * (-6896.198) (-6900.418) (-6892.041) [-6891.147] -- 0:24:08
Average standard deviation of split frequencies: 0.007883
296000 -- [-6884.813] (-6894.947) (-6915.917) (-6899.625) * (-6885.261) (-6895.027) [-6886.862] (-6902.708) -- 0:24:06
297000 -- (-6892.511) [-6883.014] (-6901.247) (-6886.358) * [-6889.315] (-6896.737) (-6898.676) (-6901.168) -- 0:24:03
298000 -- (-6902.048) [-6885.928] (-6904.744) (-6893.382) * (-6902.642) (-6897.253) (-6907.828) [-6894.496] -- 0:24:01
299000 -- (-6896.670) [-6894.993] (-6897.129) (-6889.318) * (-6890.901) (-6891.557) (-6899.943) [-6890.021] -- 0:23:59
300000 -- (-6896.837) [-6885.382] (-6895.816) (-6885.280) * (-6904.546) [-6893.892] (-6894.385) (-6903.502) -- 0:23:57
Average standard deviation of split frequencies: 0.008075
301000 -- (-6903.378) (-6905.844) (-6895.384) [-6899.071] * (-6894.962) (-6903.481) [-6894.888] (-6899.381) -- 0:23:55
302000 -- [-6897.062] (-6918.059) (-6897.519) (-6887.545) * (-6890.875) [-6893.658] (-6905.644) (-6897.596) -- 0:23:52
303000 -- (-6888.802) (-6902.667) (-6894.190) [-6896.622] * (-6896.215) (-6899.962) (-6902.718) [-6892.374] -- 0:23:50
304000 -- (-6894.928) (-6900.684) [-6883.643] (-6888.059) * (-6896.116) (-6895.347) (-6893.074) [-6896.163] -- 0:23:50
305000 -- (-6904.701) (-6892.636) (-6897.395) [-6893.809] * (-6895.012) [-6893.581] (-6891.380) (-6901.498) -- 0:23:48
Average standard deviation of split frequencies: 0.008011
306000 -- (-6897.860) (-6888.619) (-6909.753) [-6899.010] * [-6898.122] (-6902.077) (-6901.556) (-6890.408) -- 0:23:46
307000 -- (-6901.046) [-6889.632] (-6885.940) (-6892.767) * (-6897.927) (-6901.185) [-6894.314] (-6893.359) -- 0:23:44
308000 -- [-6893.389] (-6888.001) (-6892.200) (-6889.987) * (-6893.172) [-6896.177] (-6899.089) (-6881.915) -- 0:23:42
309000 -- (-6908.889) (-6907.676) (-6897.183) [-6895.990] * [-6889.044] (-6893.375) (-6883.857) (-6892.756) -- 0:23:40
310000 -- (-6896.411) (-6899.497) [-6888.692] (-6890.042) * (-6898.917) (-6915.150) [-6886.765] (-6894.388) -- 0:23:37
Average standard deviation of split frequencies: 0.008497
311000 -- (-6903.885) [-6892.786] (-6893.180) (-6906.304) * [-6897.543] (-6902.451) (-6900.243) (-6887.807) -- 0:23:35
312000 -- (-6898.323) [-6890.916] (-6893.898) (-6902.819) * [-6891.941] (-6923.063) (-6902.158) (-6902.687) -- 0:23:33
313000 -- (-6899.134) (-6896.133) [-6896.071] (-6907.444) * (-6891.559) (-6899.247) [-6894.252] (-6901.657) -- 0:23:31
314000 -- (-6896.465) (-6894.093) (-6905.384) [-6893.612] * [-6888.132] (-6895.726) (-6890.820) (-6898.360) -- 0:23:29
315000 -- (-6891.619) (-6889.502) [-6908.270] (-6893.684) * (-6896.249) (-6896.556) [-6893.349] (-6890.110) -- 0:23:26
Average standard deviation of split frequencies: 0.008578
316000 -- (-6898.583) (-6884.961) (-6896.189) [-6895.320] * (-6909.279) (-6897.951) [-6885.942] (-6895.666) -- 0:23:24
317000 -- (-6908.373) (-6902.521) (-6889.279) [-6895.244] * (-6896.116) (-6895.945) (-6896.003) [-6894.724] -- 0:23:22
318000 -- (-6900.790) (-6897.461) (-6893.844) [-6891.613] * [-6884.519] (-6897.107) (-6895.351) (-6895.119) -- 0:23:20
319000 -- (-6888.739) [-6887.085] (-6906.175) (-6903.157) * [-6897.783] (-6886.259) (-6896.788) (-6900.124) -- 0:23:18
320000 -- (-6902.090) (-6887.624) (-6901.086) [-6887.570] * (-6920.307) (-6907.654) (-6903.241) [-6886.808] -- 0:23:18
Average standard deviation of split frequencies: 0.007791
321000 -- (-6898.899) (-6892.879) [-6900.221] (-6896.347) * [-6898.282] (-6913.475) (-6895.018) (-6902.971) -- 0:23:16
322000 -- (-6892.593) [-6902.222] (-6904.685) (-6903.433) * [-6892.633] (-6892.741) (-6904.896) (-6895.794) -- 0:23:13
323000 -- (-6886.907) (-6893.539) [-6887.361] (-6902.027) * (-6903.471) [-6890.289] (-6900.969) (-6903.380) -- 0:23:11
324000 -- (-6895.388) (-6896.408) [-6891.704] (-6894.506) * (-6892.574) [-6892.631] (-6896.856) (-6892.370) -- 0:23:09
325000 -- (-6891.618) [-6896.269] (-6888.169) (-6892.854) * [-6898.164] (-6886.912) (-6900.501) (-6898.125) -- 0:23:07
Average standard deviation of split frequencies: 0.006796
326000 -- (-6906.338) [-6899.934] (-6897.414) (-6901.717) * (-6894.630) (-6900.850) (-6914.252) [-6893.130] -- 0:23:05
327000 -- (-6913.139) (-6909.663) [-6890.763] (-6889.329) * (-6897.619) [-6895.676] (-6894.245) (-6894.019) -- 0:23:03
328000 -- (-6893.750) [-6892.035] (-6900.835) (-6894.109) * [-6893.507] (-6895.447) (-6897.549) (-6894.566) -- 0:23:02
329000 -- (-6906.448) [-6895.751] (-6904.949) (-6899.855) * (-6896.849) (-6892.625) [-6885.395] (-6903.654) -- 0:23:00
330000 -- (-6887.515) (-6907.947) [-6891.845] (-6907.164) * (-6903.248) (-6903.144) (-6896.023) [-6887.178] -- 0:22:58
Average standard deviation of split frequencies: 0.006986
331000 -- [-6891.226] (-6900.991) (-6889.634) (-6888.437) * (-6912.981) (-6882.557) [-6907.804] (-6888.649) -- 0:22:56
332000 -- (-6886.053) (-6907.663) (-6897.953) [-6891.518] * (-6897.300) (-6899.545) [-6889.605] (-6899.586) -- 0:22:54
333000 -- (-6888.942) (-6907.111) (-6911.735) [-6888.626] * (-6919.023) [-6899.923] (-6892.305) (-6888.470) -- 0:22:52
334000 -- [-6883.185] (-6887.782) (-6909.203) (-6896.401) * (-6901.279) [-6887.528] (-6904.379) (-6891.717) -- 0:22:49
335000 -- (-6885.217) [-6885.438] (-6897.059) (-6890.427) * [-6895.360] (-6901.968) (-6902.059) (-6888.560) -- 0:22:47
Average standard deviation of split frequencies: 0.006945
336000 -- (-6894.278) (-6894.943) (-6891.625) [-6890.186] * (-6894.935) [-6888.136] (-6899.391) (-6884.512) -- 0:22:45
337000 -- (-6900.877) [-6891.024] (-6901.631) (-6901.092) * [-6895.420] (-6888.292) (-6893.450) (-6896.978) -- 0:22:43
338000 -- [-6892.724] (-6898.135) (-6910.192) (-6890.735) * [-6903.430] (-6896.771) (-6898.441) (-6895.661) -- 0:22:41
339000 -- (-6900.708) (-6893.895) (-6895.069) [-6890.462] * [-6900.770] (-6907.775) (-6897.685) (-6899.444) -- 0:22:39
340000 -- [-6894.550] (-6896.943) (-6888.436) (-6894.647) * (-6901.322) [-6897.860] (-6892.791) (-6898.650) -- 0:22:36
Average standard deviation of split frequencies: 0.006988
341000 -- (-6891.225) [-6902.475] (-6889.505) (-6907.635) * [-6900.997] (-6901.873) (-6895.920) (-6898.018) -- 0:22:36
342000 -- (-6895.597) (-6901.745) [-6892.555] (-6900.811) * (-6903.850) [-6887.520] (-6899.016) (-6903.280) -- 0:22:34
343000 -- (-6892.185) (-6893.589) [-6886.071] (-6907.043) * [-6884.870] (-6895.537) (-6893.820) (-6886.665) -- 0:22:32
344000 -- (-6897.944) (-6893.561) [-6889.864] (-6903.938) * [-6894.517] (-6897.725) (-6905.705) (-6897.827) -- 0:22:30
345000 -- [-6893.242] (-6903.396) (-6890.515) (-6898.986) * (-6899.181) [-6886.678] (-6899.285) (-6902.052) -- 0:22:27
Average standard deviation of split frequencies: 0.007766
346000 -- [-6894.338] (-6904.132) (-6897.783) (-6886.299) * (-6899.323) (-6887.582) [-6900.443] (-6897.900) -- 0:22:25
347000 -- (-6900.605) (-6893.719) (-6902.203) [-6892.303] * [-6888.908] (-6894.453) (-6891.419) (-6897.708) -- 0:22:23
348000 -- [-6887.140] (-6896.012) (-6899.049) (-6905.412) * (-6891.829) [-6887.978] (-6897.269) (-6894.511) -- 0:22:23
349000 -- (-6890.638) [-6890.023] (-6899.942) (-6897.799) * [-6887.467] (-6892.343) (-6894.831) (-6908.431) -- 0:22:21
350000 -- [-6893.262] (-6902.150) (-6899.900) (-6902.503) * (-6893.585) [-6891.764] (-6894.544) (-6902.678) -- 0:22:19
Average standard deviation of split frequencies: 0.007394
351000 -- (-6894.848) (-6904.563) (-6886.359) [-6897.070] * (-6892.671) (-6902.474) [-6899.589] (-6911.319) -- 0:22:16
352000 -- [-6897.362] (-6896.927) (-6897.793) (-6900.580) * (-6906.438) [-6893.591] (-6897.018) (-6899.809) -- 0:22:14
353000 -- (-6883.717) (-6901.741) [-6891.281] (-6907.593) * (-6901.987) (-6889.905) (-6900.348) [-6890.736] -- 0:22:12
354000 -- (-6895.353) (-6891.525) [-6884.530] (-6897.292) * (-6895.337) [-6897.445] (-6892.502) (-6910.243) -- 0:22:10
355000 -- (-6896.614) (-6894.688) (-6889.157) [-6881.786] * (-6902.431) (-6887.612) (-6892.172) [-6894.809] -- 0:22:08
Average standard deviation of split frequencies: 0.007217
356000 -- (-6899.320) (-6897.036) [-6894.701] (-6898.600) * (-6892.161) [-6888.444] (-6900.937) (-6898.082) -- 0:22:05
357000 -- (-6903.493) [-6894.984] (-6898.870) (-6898.131) * [-6894.295] (-6882.716) (-6897.156) (-6905.603) -- 0:22:03
358000 -- (-6899.055) [-6891.892] (-6904.391) (-6901.582) * (-6887.991) (-6894.751) [-6889.987] (-6893.661) -- 0:22:01
359000 -- (-6897.738) (-6903.741) (-6897.142) [-6898.223] * (-6898.450) (-6894.122) (-6894.392) [-6890.861] -- 0:21:59
360000 -- (-6899.581) [-6890.002] (-6898.236) (-6904.966) * (-6892.419) [-6890.845] (-6900.706) (-6899.554) -- 0:21:59
Average standard deviation of split frequencies: 0.007646
361000 -- [-6885.699] (-6895.194) (-6900.374) (-6891.217) * (-6897.182) [-6895.936] (-6890.087) (-6905.118) -- 0:21:56
362000 -- [-6889.495] (-6903.793) (-6894.212) (-6896.192) * (-6887.348) (-6892.954) [-6885.245] (-6898.346) -- 0:21:54
363000 -- (-6892.777) (-6892.216) (-6895.130) [-6887.777] * (-6895.818) (-6897.088) [-6897.561] (-6891.088) -- 0:21:52
364000 -- (-6891.129) (-6890.249) [-6888.164] (-6898.149) * [-6888.969] (-6902.040) (-6890.027) (-6899.852) -- 0:21:50
365000 -- (-6895.200) (-6886.778) (-6901.839) [-6893.163] * (-6896.942) (-6898.620) (-6890.883) [-6898.469] -- 0:21:48
Average standard deviation of split frequencies: 0.007535
366000 -- (-6904.960) (-6912.188) (-6920.156) [-6892.003] * (-6907.068) [-6892.195] (-6885.381) (-6893.735) -- 0:21:46
367000 -- (-6899.111) [-6892.613] (-6890.992) (-6893.609) * (-6907.330) (-6890.065) (-6894.944) [-6900.426] -- 0:21:43
368000 -- (-6897.504) (-6901.617) [-6892.427] (-6899.369) * (-6895.983) [-6891.004] (-6888.657) (-6893.434) -- 0:21:41
369000 -- (-6890.394) (-6897.949) (-6889.528) [-6892.374] * (-6892.716) (-6904.176) [-6900.710] (-6892.518) -- 0:21:41
370000 -- [-6891.795] (-6890.092) (-6915.577) (-6893.374) * (-6903.099) [-6887.839] (-6897.889) (-6884.516) -- 0:21:39
Average standard deviation of split frequencies: 0.008139
371000 -- (-6902.763) [-6888.871] (-6887.458) (-6900.714) * [-6895.556] (-6908.544) (-6904.452) (-6901.119) -- 0:21:36
372000 -- (-6899.958) (-6892.354) [-6893.091] (-6894.527) * (-6893.862) (-6885.403) (-6891.088) [-6887.018] -- 0:21:34
373000 -- (-6893.709) (-6892.081) (-6891.612) [-6893.413] * (-6901.919) [-6889.183] (-6897.573) (-6909.555) -- 0:21:32
374000 -- [-6901.679] (-6885.608) (-6915.333) (-6894.461) * (-6887.548) (-6898.087) [-6893.099] (-6907.416) -- 0:21:30
375000 -- (-6897.128) (-6899.169) (-6897.946) [-6897.456] * (-6891.796) (-6898.748) [-6895.981] (-6895.195) -- 0:21:28
Average standard deviation of split frequencies: 0.008713
376000 -- [-6894.333] (-6891.182) (-6891.545) (-6894.558) * [-6885.978] (-6904.033) (-6897.798) (-6899.313) -- 0:21:27
377000 -- (-6894.573) (-6902.418) (-6904.377) [-6887.880] * [-6893.620] (-6904.749) (-6896.175) (-6891.464) -- 0:21:25
378000 -- (-6892.108) [-6889.906] (-6892.993) (-6892.068) * [-6900.842] (-6891.070) (-6892.994) (-6894.801) -- 0:21:23
379000 -- (-6896.944) (-6900.124) (-6905.515) [-6888.734] * (-6897.462) (-6902.368) [-6884.492] (-6885.313) -- 0:21:21
380000 -- [-6891.761] (-6902.535) (-6906.119) (-6910.139) * [-6890.633] (-6888.635) (-6891.312) (-6888.903) -- 0:21:19
Average standard deviation of split frequencies: 0.009040
381000 -- (-6893.248) [-6903.730] (-6908.293) (-6901.267) * [-6903.312] (-6891.181) (-6888.709) (-6894.444) -- 0:21:16
382000 -- [-6885.043] (-6886.451) (-6912.353) (-6904.765) * (-6896.237) [-6895.606] (-6893.161) (-6894.426) -- 0:21:14
383000 -- (-6904.617) [-6880.346] (-6906.730) (-6899.714) * (-6895.091) (-6902.079) (-6879.430) [-6888.998] -- 0:21:12
384000 -- (-6896.677) (-6898.816) (-6896.226) [-6901.225] * (-6891.405) (-6904.811) [-6890.612] (-6891.763) -- 0:21:10
385000 -- (-6900.860) (-6905.103) (-6885.747) [-6901.426] * (-6898.340) (-6898.264) (-6889.340) [-6884.339] -- 0:21:08
Average standard deviation of split frequencies: 0.008549
386000 -- (-6909.779) (-6906.139) [-6895.059] (-6888.178) * (-6899.545) [-6896.067] (-6892.820) (-6894.164) -- 0:21:06
387000 -- (-6892.119) [-6886.754] (-6896.196) (-6907.863) * [-6899.899] (-6897.834) (-6896.963) (-6898.552) -- 0:21:04
388000 -- [-6896.051] (-6891.577) (-6899.519) (-6887.605) * (-6889.186) (-6902.535) [-6889.038] (-6892.749) -- 0:21:01
389000 -- (-6904.242) (-6889.183) (-6898.279) [-6891.187] * (-6897.624) (-6891.824) (-6906.976) [-6886.340] -- 0:20:59
390000 -- (-6890.251) (-6887.254) (-6895.154) [-6886.333] * [-6892.641] (-6907.995) (-6908.578) (-6894.710) -- 0:20:57
Average standard deviation of split frequencies: 0.008688
391000 -- (-6902.802) (-6888.549) [-6888.841] (-6885.824) * (-6899.722) (-6911.094) (-6909.016) [-6897.243] -- 0:20:55
392000 -- (-6896.719) (-6890.936) [-6892.773] (-6886.633) * (-6904.645) (-6909.084) [-6897.638] (-6906.650) -- 0:20:53
393000 -- (-6912.018) [-6884.427] (-6904.939) (-6892.911) * (-6900.547) (-6889.525) [-6896.782] (-6900.608) -- 0:20:52
394000 -- (-6894.173) [-6894.230] (-6904.550) (-6891.057) * [-6897.685] (-6899.039) (-6890.251) (-6893.000) -- 0:20:50
395000 -- (-6887.524) (-6896.804) (-6902.175) [-6894.755] * [-6889.679] (-6890.745) (-6893.387) (-6897.499) -- 0:20:48
Average standard deviation of split frequencies: 0.007976
396000 -- (-6898.030) (-6885.827) [-6888.045] (-6883.904) * (-6896.595) (-6894.083) [-6896.034] (-6891.942) -- 0:20:46
397000 -- [-6893.311] (-6904.632) (-6904.787) (-6889.506) * (-6893.799) (-6905.680) [-6894.892] (-6890.803) -- 0:20:43
398000 -- [-6888.436] (-6893.242) (-6896.669) (-6894.391) * (-6893.885) [-6897.261] (-6904.372) (-6901.949) -- 0:20:41
399000 -- [-6891.900] (-6899.160) (-6900.969) (-6892.365) * (-6889.488) (-6896.716) [-6899.748] (-6896.425) -- 0:20:39
400000 -- (-6892.990) (-6900.222) [-6906.063] (-6887.826) * (-6898.606) [-6890.419] (-6905.264) (-6895.133) -- 0:20:37
Average standard deviation of split frequencies: 0.008412
401000 -- (-6902.300) (-6894.675) [-6886.783] (-6898.727) * (-6901.992) [-6894.864] (-6892.617) (-6907.094) -- 0:20:36
402000 -- (-6893.348) (-6891.382) [-6893.960] (-6891.990) * (-6911.999) [-6891.184] (-6895.128) (-6895.388) -- 0:20:34
403000 -- [-6900.304] (-6896.741) (-6894.292) (-6910.832) * (-6895.285) (-6896.537) (-6886.816) [-6892.578] -- 0:20:32
404000 -- (-6893.106) (-6900.408) [-6892.922] (-6894.333) * (-6903.692) (-6896.387) [-6894.893] (-6898.570) -- 0:20:30
405000 -- [-6889.978] (-6893.884) (-6906.092) (-6895.591) * (-6907.560) [-6890.132] (-6901.719) (-6901.488) -- 0:20:28
Average standard deviation of split frequencies: 0.007721
406000 -- (-6910.488) (-6889.633) (-6894.655) [-6896.279] * (-6899.266) [-6894.007] (-6895.661) (-6919.328) -- 0:20:26
407000 -- (-6902.537) [-6885.309] (-6887.270) (-6913.594) * [-6890.015] (-6891.887) (-6895.909) (-6907.973) -- 0:20:25
408000 -- (-6904.114) (-6896.667) [-6887.702] (-6901.795) * (-6893.329) (-6890.419) [-6892.190] (-6903.898) -- 0:20:23
409000 -- (-6891.946) (-6894.404) [-6888.659] (-6910.102) * (-6889.560) (-6893.484) [-6893.621] (-6892.317) -- 0:20:21
410000 -- [-6887.735] (-6900.546) (-6893.177) (-6896.949) * [-6892.134] (-6897.990) (-6902.156) (-6893.664) -- 0:20:18
Average standard deviation of split frequencies: 0.007347
411000 -- (-6899.165) (-6892.485) [-6904.850] (-6897.697) * (-6884.026) (-6894.133) (-6896.589) [-6895.924] -- 0:20:16
412000 -- (-6908.229) (-6888.950) (-6898.689) [-6894.170] * [-6892.226] (-6891.311) (-6893.387) (-6893.159) -- 0:20:14
413000 -- [-6896.853] (-6897.595) (-6904.359) (-6891.875) * (-6888.262) (-6895.746) (-6897.668) [-6884.562] -- 0:20:12
414000 -- (-6893.648) [-6886.455] (-6912.599) (-6891.052) * [-6889.526] (-6892.990) (-6897.471) (-6884.950) -- 0:20:10
415000 -- (-6895.358) [-6890.691] (-6891.589) (-6887.031) * (-6895.282) (-6895.641) [-6890.381] (-6899.742) -- 0:20:08
Average standard deviation of split frequencies: 0.007366
416000 -- (-6900.677) (-6886.043) (-6905.848) [-6881.169] * [-6883.204] (-6890.942) (-6897.137) (-6899.575) -- 0:20:05
417000 -- (-6893.218) (-6894.269) (-6909.195) [-6891.016] * (-6893.830) (-6895.284) (-6889.098) [-6891.121] -- 0:20:05
418000 -- [-6905.179] (-6895.766) (-6895.228) (-6896.691) * (-6899.173) (-6906.213) [-6892.102] (-6903.483) -- 0:20:02
419000 -- (-6905.644) (-6897.542) [-6887.519] (-6892.163) * (-6902.383) (-6895.361) [-6887.790] (-6907.837) -- 0:20:00
420000 -- (-6897.566) [-6897.880] (-6914.731) (-6894.639) * (-6905.460) (-6887.832) [-6890.868] (-6892.692) -- 0:19:58
Average standard deviation of split frequencies: 0.006724
421000 -- (-6901.602) (-6896.206) [-6887.545] (-6896.161) * (-6905.026) (-6907.701) (-6894.327) [-6883.549] -- 0:19:56
422000 -- (-6905.321) (-6891.670) (-6899.971) [-6891.108] * (-6891.981) [-6895.285] (-6894.310) (-6905.249) -- 0:19:54
423000 -- [-6890.715] (-6892.159) (-6909.698) (-6896.501) * (-6895.325) (-6901.491) (-6900.190) [-6900.571] -- 0:19:52
424000 -- (-6912.860) [-6903.799] (-6908.684) (-6912.017) * (-6886.429) [-6888.156] (-6887.737) (-6896.003) -- 0:19:50
425000 -- (-6903.350) (-6898.307) (-6906.351) [-6898.261] * (-6893.374) (-6894.735) [-6889.943] (-6898.495) -- 0:19:47
Average standard deviation of split frequencies: 0.006418
426000 -- (-6891.640) (-6904.441) (-6896.624) [-6889.622] * (-6884.844) (-6902.753) [-6892.946] (-6897.309) -- 0:19:45
427000 -- [-6890.211] (-6891.722) (-6896.293) (-6893.579) * (-6886.298) (-6894.145) [-6889.237] (-6900.895) -- 0:19:43
428000 -- [-6894.264] (-6903.774) (-6891.724) (-6884.175) * [-6898.570] (-6893.618) (-6896.155) (-6902.409) -- 0:19:41
429000 -- (-6902.503) [-6892.331] (-6894.144) (-6893.084) * [-6885.889] (-6892.812) (-6906.086) (-6904.027) -- 0:19:39
430000 -- [-6899.071] (-6896.693) (-6896.090) (-6894.169) * (-6888.555) (-6892.351) (-6891.763) [-6889.197] -- 0:19:37
Average standard deviation of split frequencies: 0.006732
431000 -- (-6892.006) (-6885.058) [-6894.559] (-6895.349) * (-6885.876) [-6902.817] (-6893.425) (-6905.508) -- 0:19:34
432000 -- (-6896.147) (-6899.869) [-6892.268] (-6896.142) * [-6893.740] (-6907.295) (-6898.248) (-6903.885) -- 0:19:32
433000 -- (-6890.652) (-6909.254) [-6887.561] (-6886.302) * (-6894.831) (-6892.878) [-6902.903] (-6902.022) -- 0:19:31
434000 -- (-6900.097) (-6896.003) (-6912.955) [-6886.515] * (-6890.557) [-6898.349] (-6910.935) (-6900.565) -- 0:19:29
435000 -- (-6891.585) (-6900.502) [-6884.282] (-6891.848) * (-6890.842) (-6898.304) (-6913.200) [-6894.565] -- 0:19:27
Average standard deviation of split frequencies: 0.006812
436000 -- (-6892.013) (-6898.747) (-6904.346) [-6898.918] * [-6890.831] (-6901.903) (-6898.706) (-6896.846) -- 0:19:25
437000 -- (-6890.671) (-6890.697) (-6900.799) [-6892.272] * [-6893.866] (-6898.044) (-6897.577) (-6895.395) -- 0:19:23
438000 -- (-6909.194) [-6889.305] (-6900.774) (-6890.281) * (-6897.653) (-6898.647) [-6900.775] (-6898.181) -- 0:19:21
439000 -- (-6899.947) (-6892.156) [-6882.864] (-6899.869) * [-6890.406] (-6897.405) (-6895.859) (-6893.409) -- 0:19:19
440000 -- [-6894.823] (-6894.366) (-6897.357) (-6907.002) * (-6897.828) (-6883.803) [-6903.373] (-6898.098) -- 0:19:16
Average standard deviation of split frequencies: 0.006900
441000 -- (-6900.234) (-6908.278) (-6903.742) [-6893.760] * [-6892.751] (-6904.588) (-6905.986) (-6900.710) -- 0:19:14
442000 -- (-6902.754) [-6886.871] (-6898.270) (-6904.957) * [-6900.170] (-6888.706) (-6899.598) (-6887.975) -- 0:19:12
443000 -- [-6892.590] (-6896.896) (-6897.188) (-6893.112) * (-6901.137) [-6899.513] (-6891.628) (-6909.888) -- 0:19:10
444000 -- (-6892.452) (-6908.350) [-6887.896] (-6900.348) * (-6900.487) (-6898.371) (-6899.990) [-6895.922] -- 0:19:08
445000 -- [-6891.218] (-6891.478) (-6899.604) (-6895.656) * [-6895.502] (-6894.044) (-6896.154) (-6909.888) -- 0:19:06
Average standard deviation of split frequencies: 0.007029
446000 -- (-6892.248) [-6893.264] (-6888.271) (-6889.229) * [-6897.306] (-6894.601) (-6895.059) (-6900.534) -- 0:19:05
447000 -- (-6910.143) (-6903.191) [-6877.885] (-6892.271) * (-6893.373) (-6897.525) [-6893.346] (-6904.959) -- 0:19:03
448000 -- (-6902.193) [-6893.463] (-6887.437) (-6891.334) * (-6904.752) (-6899.276) [-6891.261] (-6910.062) -- 0:19:00
449000 -- (-6899.588) (-6909.437) [-6886.179] (-6908.964) * (-6906.198) (-6896.637) (-6879.265) [-6898.951] -- 0:18:58
450000 -- (-6891.105) [-6901.180] (-6896.076) (-6896.079) * (-6895.856) [-6890.042] (-6883.879) (-6896.520) -- 0:18:56
Average standard deviation of split frequencies: 0.007427
451000 -- (-6894.912) (-6903.998) (-6896.994) [-6889.143] * (-6897.494) (-6895.760) (-6890.314) [-6897.902] -- 0:18:54
452000 -- (-6904.451) (-6899.613) [-6892.174] (-6889.526) * (-6905.587) [-6894.024] (-6890.538) (-6899.784) -- 0:18:52
453000 -- (-6893.372) (-6901.313) (-6899.417) [-6895.544] * (-6895.596) [-6896.235] (-6887.539) (-6888.966) -- 0:18:50
454000 -- (-6890.939) (-6893.665) (-6898.197) [-6887.769] * [-6897.590] (-6887.339) (-6904.140) (-6903.303) -- 0:18:48
455000 -- (-6903.269) (-6905.473) (-6899.756) [-6908.720] * (-6898.801) (-6890.930) (-6894.613) [-6891.876] -- 0:18:47
Average standard deviation of split frequencies: 0.007443
456000 -- (-6894.186) (-6887.459) (-6890.361) [-6889.993] * [-6893.705] (-6901.498) (-6894.108) (-6892.903) -- 0:18:44
457000 -- [-6886.344] (-6901.809) (-6891.980) (-6898.192) * (-6891.657) (-6894.415) (-6892.431) [-6892.793] -- 0:18:42
458000 -- (-6901.928) [-6888.344] (-6891.859) (-6899.479) * (-6902.778) (-6893.359) [-6892.184] (-6888.830) -- 0:18:40
459000 -- (-6900.699) [-6892.868] (-6893.781) (-6894.364) * (-6888.014) (-6893.550) (-6894.967) [-6889.772] -- 0:18:38
460000 -- (-6908.885) [-6896.408] (-6894.089) (-6888.523) * (-6888.552) [-6887.661] (-6900.184) (-6896.443) -- 0:18:36
Average standard deviation of split frequencies: 0.007317
461000 -- (-6899.188) [-6896.188] (-6893.098) (-6899.374) * (-6899.592) (-6886.681) (-6898.812) [-6894.053] -- 0:18:34
462000 -- (-6905.099) [-6903.427] (-6905.919) (-6900.658) * [-6903.422] (-6892.174) (-6884.897) (-6903.837) -- 0:18:32
463000 -- (-6895.536) (-6902.654) (-6891.515) [-6886.258] * (-6899.650) (-6892.328) [-6900.335] (-6894.257) -- 0:18:29
464000 -- (-6895.964) [-6888.111] (-6902.859) (-6898.702) * (-6904.274) [-6892.210] (-6896.966) (-6895.670) -- 0:18:27
465000 -- [-6889.395] (-6895.063) (-6901.286) (-6893.288) * (-6895.010) (-6899.640) [-6880.262] (-6907.593) -- 0:18:26
Average standard deviation of split frequencies: 0.006727
466000 -- [-6896.423] (-6891.250) (-6898.326) (-6909.128) * (-6903.154) [-6896.980] (-6896.882) (-6892.911) -- 0:18:24
467000 -- (-6890.083) (-6896.142) [-6894.365] (-6901.134) * (-6896.758) (-6885.965) (-6902.711) [-6891.359] -- 0:18:22
468000 -- [-6889.794] (-6908.714) (-6899.001) (-6892.351) * (-6904.124) [-6884.783] (-6897.833) (-6896.696) -- 0:18:20
469000 -- (-6892.595) (-6888.703) (-6891.973) [-6898.665] * (-6906.189) (-6901.068) [-6887.560] (-6896.994) -- 0:18:18
470000 -- (-6896.061) (-6891.079) (-6891.765) [-6893.953] * (-6903.520) [-6884.409] (-6895.446) (-6895.554) -- 0:18:16
Average standard deviation of split frequencies: 0.006510
471000 -- (-6897.093) [-6891.754] (-6893.302) (-6896.055) * (-6901.825) [-6892.860] (-6904.924) (-6898.507) -- 0:18:13
472000 -- (-6894.039) [-6899.028] (-6897.484) (-6891.717) * [-6891.663] (-6893.429) (-6897.162) (-6887.994) -- 0:18:11
473000 -- (-6895.194) (-6889.373) (-6893.935) [-6892.682] * (-6895.940) [-6891.379] (-6892.888) (-6899.633) -- 0:18:09
474000 -- [-6890.665] (-6901.290) (-6898.753) (-6904.186) * (-6890.580) (-6889.583) (-6896.109) [-6896.549] -- 0:18:07
475000 -- [-6895.147] (-6891.372) (-6891.537) (-6892.674) * (-6902.750) (-6886.713) (-6904.618) [-6886.607] -- 0:18:05
Average standard deviation of split frequencies: 0.006041
476000 -- [-6894.154] (-6903.306) (-6885.222) (-6899.743) * [-6895.086] (-6887.543) (-6899.803) (-6894.641) -- 0:18:03
477000 -- (-6910.625) (-6895.371) [-6887.477] (-6894.583) * (-6895.860) (-6897.846) (-6902.423) [-6894.550] -- 0:18:01
478000 -- (-6898.887) (-6884.039) [-6891.064] (-6890.717) * (-6900.267) [-6890.952] (-6905.864) (-6897.490) -- 0:17:58
479000 -- (-6902.855) [-6886.622] (-6892.223) (-6895.641) * (-6908.071) (-6896.285) (-6892.417) [-6889.070] -- 0:17:56
480000 -- (-6899.129) (-6898.472) [-6891.495] (-6896.271) * [-6893.259] (-6908.180) (-6890.863) (-6894.377) -- 0:17:55
Average standard deviation of split frequencies: 0.005835
481000 -- (-6908.135) (-6896.402) (-6892.510) [-6897.839] * (-6899.906) (-6887.993) (-6897.587) [-6899.481] -- 0:17:53
482000 -- (-6899.712) (-6888.277) (-6908.296) [-6886.751] * [-6892.396] (-6898.187) (-6895.153) (-6905.964) -- 0:17:51
483000 -- (-6900.498) (-6893.661) [-6884.554] (-6901.546) * (-6895.583) (-6891.766) (-6904.504) [-6883.297] -- 0:17:49
484000 -- [-6897.734] (-6894.960) (-6893.294) (-6893.417) * (-6892.971) (-6904.207) [-6892.280] (-6902.563) -- 0:17:47
485000 -- (-6900.160) [-6901.009] (-6899.658) (-6899.716) * (-6906.209) [-6887.544] (-6893.751) (-6898.575) -- 0:17:45
Average standard deviation of split frequencies: 0.005820
486000 -- [-6887.997] (-6895.403) (-6903.340) (-6897.757) * (-6906.984) [-6891.818] (-6891.881) (-6900.104) -- 0:17:42
487000 -- (-6888.098) (-6903.734) (-6896.852) [-6893.971] * (-6896.406) [-6888.636] (-6901.863) (-6909.543) -- 0:17:40
488000 -- (-6886.610) (-6892.174) (-6902.638) [-6895.000] * (-6895.785) (-6903.525) (-6896.326) [-6902.173] -- 0:17:38
489000 -- (-6895.834) [-6893.848] (-6891.368) (-6895.535) * (-6905.228) (-6899.416) [-6887.427] (-6897.390) -- 0:17:36
490000 -- [-6891.227] (-6903.937) (-6889.762) (-6890.805) * [-6893.578] (-6903.778) (-6892.748) (-6907.954) -- 0:17:35
Average standard deviation of split frequencies: 0.006437
491000 -- (-6890.184) (-6898.394) [-6884.495] (-6890.249) * [-6893.361] (-6903.243) (-6890.613) (-6893.121) -- 0:17:33
492000 -- (-6900.802) (-6889.552) [-6893.554] (-6893.746) * (-6894.471) (-6887.263) (-6890.328) [-6890.455] -- 0:17:31
493000 -- (-6890.914) (-6901.977) (-6894.420) [-6892.786] * (-6888.780) [-6890.012] (-6898.255) (-6895.961) -- 0:17:28
494000 -- (-6902.616) (-6902.717) (-6903.987) [-6897.042] * (-6881.554) (-6896.029) [-6895.574] (-6901.219) -- 0:17:26
495000 -- (-6892.621) (-6889.878) (-6894.523) [-6892.230] * [-6888.931] (-6891.666) (-6901.806) (-6907.539) -- 0:17:24
Average standard deviation of split frequencies: 0.006463
496000 -- (-6888.392) (-6889.114) [-6883.103] (-6895.745) * (-6897.477) (-6890.888) [-6892.164] (-6891.916) -- 0:17:22
497000 -- (-6892.666) (-6901.646) [-6896.131] (-6902.596) * [-6897.612] (-6886.805) (-6902.954) (-6887.024) -- 0:17:20
498000 -- (-6888.941) (-6891.498) [-6903.260] (-6900.848) * [-6896.621] (-6894.290) (-6894.025) (-6886.866) -- 0:17:19
499000 -- (-6894.039) [-6892.170] (-6898.288) (-6894.663) * (-6892.028) (-6903.032) [-6901.030] (-6893.474) -- 0:17:17
500000 -- (-6895.191) [-6890.019] (-6893.415) (-6905.660) * [-6897.885] (-6896.918) (-6899.671) (-6893.417) -- 0:17:15
Average standard deviation of split frequencies: 0.006450
501000 -- (-6892.279) [-6896.717] (-6904.636) (-6894.919) * (-6908.617) (-6896.938) (-6895.253) [-6886.611] -- 0:17:12
502000 -- (-6893.605) [-6877.324] (-6896.128) (-6893.151) * [-6889.623] (-6894.407) (-6910.653) (-6889.037) -- 0:17:10
503000 -- [-6905.408] (-6888.178) (-6896.861) (-6899.884) * (-6892.622) [-6901.251] (-6898.546) (-6907.975) -- 0:17:08
504000 -- (-6895.076) (-6898.295) [-6892.204] (-6907.050) * (-6912.314) (-6901.317) [-6890.275] (-6911.673) -- 0:17:06
505000 -- (-6891.443) (-6896.307) (-6894.679) [-6895.818] * (-6900.956) [-6899.715] (-6899.260) (-6903.774) -- 0:17:04
Average standard deviation of split frequencies: 0.005776
506000 -- [-6891.182] (-6895.160) (-6901.142) (-6888.392) * (-6896.087) (-6905.699) [-6893.403] (-6893.943) -- 0:17:02
507000 -- (-6897.083) [-6887.983] (-6888.872) (-6910.763) * (-6901.231) (-6894.983) (-6900.314) [-6901.320] -- 0:17:00
508000 -- (-6890.061) [-6893.392] (-6885.820) (-6911.360) * (-6886.745) (-6902.625) [-6895.486] (-6889.285) -- 0:16:57
509000 -- (-6904.249) (-6913.594) (-6892.259) [-6886.786] * (-6891.905) [-6900.405] (-6897.556) (-6883.770) -- 0:16:56
510000 -- (-6886.995) (-6892.915) (-6897.862) [-6894.217] * [-6892.890] (-6894.146) (-6894.684) (-6900.624) -- 0:16:54
Average standard deviation of split frequencies: 0.005954
511000 -- (-6894.627) (-6893.515) [-6890.029] (-6897.923) * (-6907.421) [-6898.676] (-6902.188) (-6890.094) -- 0:16:52
512000 -- (-6886.478) [-6903.578] (-6887.353) (-6908.026) * [-6893.497] (-6901.180) (-6899.537) (-6900.437) -- 0:16:50
513000 -- (-6898.450) (-6889.128) [-6892.938] (-6899.999) * [-6897.621] (-6895.870) (-6895.555) (-6883.793) -- 0:16:48
514000 -- (-6907.073) [-6893.321] (-6889.229) (-6891.983) * (-6901.922) (-6898.598) (-6885.782) [-6897.619] -- 0:16:46
515000 -- (-6893.906) [-6883.295] (-6890.493) (-6902.299) * (-6900.737) (-6896.649) [-6894.870] (-6911.308) -- 0:16:43
Average standard deviation of split frequencies: 0.005116
516000 -- (-6900.178) [-6885.858] (-6901.661) (-6893.216) * [-6884.518] (-6891.280) (-6889.570) (-6903.728) -- 0:16:41
517000 -- (-6899.997) (-6895.691) (-6897.660) [-6903.990] * (-6890.942) (-6900.762) [-6899.278] (-6907.014) -- 0:16:39
518000 -- [-6897.356] (-6910.783) (-6896.584) (-6889.071) * [-6898.692] (-6886.306) (-6889.746) (-6891.532) -- 0:16:37
519000 -- (-6897.224) (-6893.127) [-6893.809] (-6893.344) * (-6904.924) (-6893.964) [-6897.160] (-6895.803) -- 0:16:35
520000 -- (-6888.578) (-6906.314) (-6891.816) [-6894.349] * (-6897.227) [-6891.233] (-6897.818) (-6898.874) -- 0:16:33
Average standard deviation of split frequencies: 0.005297
521000 -- [-6894.063] (-6906.005) (-6897.731) (-6886.379) * (-6886.960) (-6897.844) (-6896.451) [-6887.061] -- 0:16:31
522000 -- (-6893.462) (-6891.260) (-6889.386) [-6890.261] * (-6888.486) (-6899.060) [-6898.635] (-6894.649) -- 0:16:28
523000 -- (-6900.625) [-6887.647] (-6897.419) (-6903.808) * (-6902.232) [-6900.586] (-6902.968) (-6907.204) -- 0:16:26
524000 -- [-6894.496] (-6897.671) (-6887.475) (-6900.643) * (-6901.474) (-6897.491) [-6892.412] (-6885.733) -- 0:16:24
525000 -- [-6896.357] (-6893.488) (-6885.394) (-6915.061) * (-6897.999) (-6911.515) (-6914.774) [-6897.081] -- 0:16:23
Average standard deviation of split frequencies: 0.005064
526000 -- (-6910.962) (-6893.888) [-6888.879] (-6909.516) * (-6907.062) [-6907.613] (-6898.176) (-6897.576) -- 0:16:21
527000 -- (-6893.473) (-6894.917) [-6885.545] (-6901.314) * (-6894.477) (-6896.128) [-6897.510] (-6894.804) -- 0:16:19
528000 -- (-6896.921) [-6892.872] (-6901.989) (-6907.878) * [-6897.597] (-6903.998) (-6890.974) (-6897.266) -- 0:16:17
529000 -- (-6897.750) (-6896.413) [-6890.714] (-6899.252) * [-6891.713] (-6895.723) (-6901.494) (-6896.599) -- 0:16:14
530000 -- (-6888.931) (-6915.947) [-6891.040] (-6899.361) * (-6896.044) (-6889.968) (-6897.455) [-6893.515] -- 0:16:12
Average standard deviation of split frequencies: 0.005552
531000 -- [-6889.026] (-6893.876) (-6900.030) (-6905.655) * (-6889.739) (-6899.052) (-6895.749) [-6895.419] -- 0:16:10
532000 -- (-6911.779) (-6906.901) (-6911.404) [-6893.869] * (-6897.780) [-6884.990] (-6895.731) (-6897.931) -- 0:16:08
533000 -- (-6887.669) (-6895.664) (-6897.813) [-6894.449] * (-6908.879) [-6887.955] (-6904.512) (-6902.720) -- 0:16:06
534000 -- (-6890.693) (-6899.639) [-6901.619] (-6893.670) * (-6899.531) [-6895.266] (-6890.303) (-6881.884) -- 0:16:04
535000 -- (-6897.595) (-6897.374) [-6888.753] (-6889.346) * (-6901.442) (-6906.728) [-6893.448] (-6893.087) -- 0:16:02
Average standard deviation of split frequencies: 0.006112
536000 -- (-6894.905) (-6904.548) [-6891.296] (-6897.880) * (-6887.950) [-6895.102] (-6896.617) (-6889.750) -- 0:16:00
537000 -- (-6905.990) (-6903.371) [-6892.020] (-6883.468) * (-6886.707) [-6885.770] (-6900.875) (-6911.620) -- 0:15:58
538000 -- (-6886.245) (-6891.952) (-6882.091) [-6894.125] * [-6894.180] (-6890.738) (-6902.699) (-6908.442) -- 0:15:56
539000 -- (-6887.982) [-6892.393] (-6894.418) (-6893.048) * (-6886.796) [-6896.473] (-6903.542) (-6893.685) -- 0:15:54
540000 -- (-6899.336) [-6896.230] (-6889.320) (-6896.525) * (-6897.368) (-6902.968) (-6907.466) [-6889.692] -- 0:15:52
Average standard deviation of split frequencies: 0.006147
541000 -- [-6896.787] (-6898.258) (-6888.898) (-6897.792) * (-6902.625) [-6893.262] (-6910.432) (-6899.189) -- 0:15:50
542000 -- (-6897.399) (-6897.941) (-6891.591) [-6896.769] * (-6901.013) (-6899.790) (-6891.016) [-6897.348] -- 0:15:48
543000 -- [-6890.602] (-6899.526) (-6905.956) (-6903.528) * (-6893.426) [-6896.300] (-6906.864) (-6894.889) -- 0:15:45
544000 -- (-6895.052) [-6889.380] (-6901.497) (-6906.738) * (-6900.019) (-6908.844) [-6887.478] (-6900.542) -- 0:15:43
545000 -- (-6903.604) (-6898.554) (-6895.948) [-6895.187] * (-6892.475) (-6899.663) [-6894.004] (-6891.471) -- 0:15:41
Average standard deviation of split frequencies: 0.005482
546000 -- [-6889.497] (-6902.668) (-6893.080) (-6891.596) * (-6886.975) (-6905.069) (-6893.971) [-6904.372] -- 0:15:39
547000 -- [-6884.512] (-6884.550) (-6898.572) (-6896.536) * (-6884.607) [-6893.922] (-6892.724) (-6908.355) -- 0:15:37
548000 -- (-6898.273) [-6889.630] (-6893.006) (-6894.275) * (-6892.927) (-6902.702) (-6892.798) [-6890.227] -- 0:15:35
549000 -- (-6909.843) (-6893.812) (-6906.865) [-6893.411] * (-6902.916) [-6888.070] (-6894.320) (-6900.982) -- 0:15:34
550000 -- (-6900.472) (-6894.394) [-6901.099] (-6901.707) * (-6894.591) (-6895.764) [-6897.819] (-6892.901) -- 0:15:31
Average standard deviation of split frequencies: 0.005479
551000 -- (-6897.884) (-6895.356) (-6895.827) [-6890.788] * (-6896.061) [-6892.232] (-6896.142) (-6909.351) -- 0:15:29
552000 -- (-6900.515) [-6882.982] (-6899.911) (-6905.144) * (-6898.429) (-6902.550) (-6898.680) [-6899.374] -- 0:15:27
553000 -- (-6899.355) (-6895.443) (-6894.272) [-6892.487] * [-6886.064] (-6903.691) (-6905.123) (-6892.982) -- 0:15:25
554000 -- (-6901.264) (-6897.681) (-6894.013) [-6896.313] * [-6898.918] (-6889.037) (-6911.988) (-6896.664) -- 0:15:23
555000 -- (-6905.851) (-6902.662) [-6883.426] (-6907.476) * (-6896.980) [-6897.423] (-6901.346) (-6890.385) -- 0:15:21
Average standard deviation of split frequencies: 0.005214
556000 -- [-6894.213] (-6905.253) (-6888.415) (-6895.298) * (-6892.930) (-6897.381) (-6896.162) [-6904.375] -- 0:15:19
557000 -- (-6890.295) (-6904.623) [-6886.851] (-6893.073) * (-6903.351) (-6886.362) [-6893.990] (-6905.179) -- 0:15:17
558000 -- (-6897.432) (-6916.144) (-6898.493) [-6892.674] * (-6915.839) (-6897.995) [-6894.002] (-6897.885) -- 0:15:14
559000 -- (-6899.610) [-6892.650] (-6887.312) (-6894.402) * (-6887.690) [-6898.865] (-6893.058) (-6890.653) -- 0:15:12
560000 -- (-6898.788) (-6896.354) (-6905.491) [-6894.451] * (-6899.577) (-6893.631) (-6905.053) [-6885.008] -- 0:15:10
Average standard deviation of split frequencies: 0.004835
561000 -- (-6900.465) (-6894.044) (-6897.365) [-6897.883] * (-6889.972) (-6895.319) [-6891.678] (-6899.807) -- 0:15:08
562000 -- (-6891.028) [-6891.064] (-6896.294) (-6902.465) * (-6896.575) (-6911.014) (-6884.078) [-6888.432] -- 0:15:06
563000 -- (-6899.974) (-6890.926) [-6890.988] (-6898.820) * (-6893.079) (-6893.236) (-6905.385) [-6883.531] -- 0:15:04
564000 -- [-6892.650] (-6906.829) (-6899.213) (-6897.045) * [-6900.627] (-6895.089) (-6921.279) (-6889.109) -- 0:15:02
565000 -- (-6891.905) (-6903.084) (-6902.508) [-6891.074] * (-6900.712) (-6886.207) [-6898.354] (-6888.579) -- 0:15:00
Average standard deviation of split frequencies: 0.004581
566000 -- (-6894.823) [-6893.145] (-6905.915) (-6896.347) * (-6899.693) [-6887.868] (-6890.577) (-6895.554) -- 0:14:58
567000 -- (-6902.977) (-6897.875) (-6897.348) [-6894.695] * [-6898.554] (-6895.418) (-6898.605) (-6915.168) -- 0:14:56
568000 -- (-6903.824) (-6896.985) (-6890.225) [-6890.960] * [-6900.388] (-6906.950) (-6902.327) (-6893.304) -- 0:14:54
569000 -- [-6893.745] (-6907.931) (-6888.084) (-6893.831) * (-6901.261) (-6893.545) (-6891.640) [-6893.255] -- 0:14:52
570000 -- (-6904.038) (-6896.545) [-6883.757] (-6894.268) * (-6901.665) (-6896.757) (-6883.608) [-6890.707] -- 0:14:50
Average standard deviation of split frequencies: 0.004048
571000 -- [-6893.451] (-6898.411) (-6902.608) (-6900.398) * [-6892.279] (-6893.517) (-6896.528) (-6889.490) -- 0:14:48
572000 -- (-6894.909) (-6888.454) (-6898.660) [-6898.014] * (-6893.737) (-6917.834) [-6896.734] (-6902.498) -- 0:14:45
573000 -- (-6898.512) [-6885.079] (-6891.405) (-6894.217) * (-6890.924) [-6886.781] (-6889.744) (-6905.653) -- 0:14:43
574000 -- (-6894.011) (-6897.340) (-6895.827) [-6892.069] * (-6897.773) [-6894.513] (-6905.944) (-6911.501) -- 0:14:42
575000 -- (-6896.720) (-6897.735) [-6888.479] (-6904.050) * (-6901.322) (-6883.763) [-6888.917] (-6899.620) -- 0:14:40
Average standard deviation of split frequencies: 0.003683
576000 -- (-6909.919) (-6893.532) [-6890.887] (-6902.510) * (-6890.824) (-6888.308) [-6891.208] (-6900.201) -- 0:14:38
577000 -- (-6903.117) [-6899.749] (-6908.267) (-6886.602) * (-6896.793) [-6892.514] (-6901.299) (-6889.755) -- 0:14:36
578000 -- (-6892.503) (-6894.705) (-6898.110) [-6894.792] * [-6884.196] (-6897.443) (-6916.838) (-6892.373) -- 0:14:34
579000 -- (-6905.890) [-6891.963] (-6895.751) (-6897.500) * (-6892.649) [-6891.139] (-6897.080) (-6895.713) -- 0:14:32
580000 -- [-6893.448] (-6914.368) (-6890.924) (-6904.539) * (-6898.320) [-6887.266] (-6902.036) (-6898.455) -- 0:14:30
Average standard deviation of split frequencies: 0.003856
581000 -- [-6896.521] (-6900.335) (-6896.928) (-6896.041) * (-6890.477) (-6898.629) (-6905.894) [-6893.713] -- 0:14:28
582000 -- [-6889.884] (-6899.029) (-6887.625) (-6906.361) * (-6885.961) [-6896.958] (-6900.980) (-6898.569) -- 0:14:26
583000 -- (-6888.488) (-6900.796) (-6888.347) [-6890.864] * (-6907.783) (-6896.185) (-6889.702) [-6892.662] -- 0:14:24
584000 -- (-6894.447) [-6892.654] (-6888.364) (-6899.381) * (-6903.448) (-6894.873) [-6892.476] (-6898.456) -- 0:14:23
585000 -- (-6895.531) (-6905.429) (-6903.971) [-6887.220] * [-6893.719] (-6899.957) (-6894.275) (-6898.947) -- 0:14:21
Average standard deviation of split frequencies: 0.003902
586000 -- (-6896.757) [-6888.326] (-6898.261) (-6896.776) * [-6889.248] (-6903.378) (-6898.437) (-6890.555) -- 0:14:19
587000 -- (-6897.196) [-6890.144] (-6905.316) (-6897.835) * [-6886.531] (-6895.544) (-6901.051) (-6900.331) -- 0:14:16
588000 -- (-6896.157) (-6908.006) (-6892.205) [-6894.296] * (-6885.958) (-6886.235) [-6891.147] (-6908.137) -- 0:14:14
589000 -- [-6885.567] (-6919.374) (-6884.212) (-6890.322) * [-6893.274] (-6899.786) (-6903.060) (-6901.053) -- 0:14:12
590000 -- [-6889.651] (-6900.705) (-6891.759) (-6895.790) * [-6896.518] (-6889.366) (-6897.277) (-6899.599) -- 0:14:10
Average standard deviation of split frequencies: 0.003831
591000 -- (-6891.857) [-6888.353] (-6889.574) (-6889.366) * (-6899.964) [-6884.985] (-6897.302) (-6889.099) -- 0:14:08
592000 -- (-6883.779) (-6894.844) [-6902.340] (-6898.989) * [-6891.886] (-6888.865) (-6892.372) (-6907.925) -- 0:14:07
593000 -- (-6895.873) (-6896.566) (-6880.977) [-6895.345] * (-6894.416) (-6889.555) [-6887.361] (-6904.306) -- 0:14:04
594000 -- (-6902.130) (-6902.802) (-6892.427) [-6897.360] * (-6894.488) [-6893.421] (-6905.040) (-6901.890) -- 0:14:02
595000 -- (-6896.289) [-6891.324] (-6902.328) (-6895.503) * [-6889.024] (-6899.960) (-6893.257) (-6893.344) -- 0:14:00
Average standard deviation of split frequencies: 0.003876
596000 -- (-6903.528) (-6889.228) [-6895.683] (-6890.824) * (-6890.988) (-6906.543) [-6886.831] (-6895.038) -- 0:13:58
597000 -- [-6901.148] (-6891.956) (-6901.429) (-6904.885) * (-6897.830) (-6896.754) [-6891.450] (-6887.613) -- 0:13:56
598000 -- (-6901.608) (-6894.008) (-6895.774) [-6898.964] * (-6890.083) [-6896.917] (-6895.320) (-6889.198) -- 0:13:54
599000 -- (-6901.637) (-6896.576) (-6906.300) [-6896.260] * [-6900.220] (-6900.896) (-6896.936) (-6907.997) -- 0:13:52
600000 -- (-6888.471) (-6904.540) (-6888.073) [-6892.679] * (-6897.380) [-6898.901] (-6890.987) (-6897.761) -- 0:13:50
Average standard deviation of split frequencies: 0.004199
601000 -- (-6899.510) [-6890.798] (-6903.246) (-6887.596) * (-6895.967) (-6892.282) [-6887.519] (-6896.714) -- 0:13:47
602000 -- [-6894.199] (-6899.998) (-6904.442) (-6903.358) * (-6893.006) (-6898.990) [-6896.678] (-6896.785) -- 0:13:45
603000 -- (-6888.211) (-6925.403) (-6900.686) [-6906.784] * (-6893.782) (-6895.500) (-6909.593) [-6889.810] -- 0:13:43
604000 -- (-6901.524) (-6902.333) (-6900.730) [-6893.340] * (-6890.485) (-6895.067) [-6886.483] (-6893.502) -- 0:13:41
605000 -- (-6893.401) [-6880.931] (-6904.320) (-6894.707) * (-6903.851) [-6888.684] (-6895.303) (-6893.024) -- 0:13:39
Average standard deviation of split frequencies: 0.004162
606000 -- (-6894.571) (-6896.252) (-6897.504) [-6898.939] * (-6907.116) (-6894.483) (-6893.695) [-6897.247] -- 0:13:37
607000 -- (-6899.535) [-6891.230] (-6894.733) (-6894.683) * (-6916.618) [-6886.169] (-6896.868) (-6885.365) -- 0:13:35
608000 -- [-6887.102] (-6897.481) (-6892.605) (-6896.600) * (-6895.164) (-6891.343) (-6904.515) [-6895.752] -- 0:13:33
609000 -- [-6895.263] (-6891.805) (-6892.296) (-6898.862) * (-6887.620) (-6897.999) (-6919.066) [-6888.634] -- 0:13:31
610000 -- (-6897.408) (-6902.690) [-6900.879] (-6903.164) * (-6897.215) [-6888.581] (-6890.777) (-6916.214) -- 0:13:29
Average standard deviation of split frequencies: 0.004555
611000 -- (-6895.110) (-6894.336) (-6896.365) [-6893.893] * [-6898.714] (-6899.702) (-6898.779) (-6892.675) -- 0:13:27
612000 -- [-6882.934] (-6895.146) (-6895.531) (-6894.540) * (-6907.309) [-6894.003] (-6891.935) (-6907.817) -- 0:13:25
613000 -- (-6892.433) [-6893.644] (-6889.908) (-6906.044) * (-6887.861) (-6893.020) (-6894.501) [-6885.965] -- 0:13:23
614000 -- (-6897.666) (-6895.991) [-6895.370] (-6884.665) * [-6888.460] (-6897.436) (-6891.265) (-6898.287) -- 0:13:20
615000 -- [-6898.125] (-6905.819) (-6899.900) (-6901.453) * (-6895.225) (-6897.556) (-6895.394) [-6893.153] -- 0:13:18
Average standard deviation of split frequencies: 0.004132
616000 -- (-6898.475) [-6895.905] (-6910.054) (-6884.887) * (-6901.481) (-6895.668) [-6895.785] (-6892.700) -- 0:13:16
617000 -- (-6901.266) [-6896.516] (-6909.356) (-6896.288) * (-6891.109) [-6891.252] (-6899.804) (-6898.995) -- 0:13:14
618000 -- (-6891.959) [-6888.766] (-6898.827) (-6893.839) * (-6897.158) [-6892.550] (-6906.829) (-6906.494) -- 0:13:12
619000 -- (-6889.756) (-6897.695) [-6886.082] (-6896.362) * (-6895.847) [-6890.083] (-6889.805) (-6897.359) -- 0:13:10
620000 -- [-6895.395] (-6898.332) (-6900.299) (-6889.963) * [-6895.853] (-6902.078) (-6895.115) (-6903.322) -- 0:13:08
Average standard deviation of split frequencies: 0.003798
621000 -- (-6887.597) [-6896.747] (-6902.550) (-6903.310) * [-6884.299] (-6905.004) (-6895.542) (-6907.763) -- 0:13:06
622000 -- (-6894.073) (-6893.846) [-6889.479] (-6896.483) * (-6891.260) (-6886.280) (-6899.632) [-6884.113] -- 0:13:03
623000 -- (-6907.268) (-6897.138) [-6888.336] (-6895.565) * (-6903.866) (-6902.896) (-6898.542) [-6895.163] -- 0:13:02
624000 -- (-6893.902) (-6902.531) (-6889.063) [-6896.754] * (-6888.464) (-6904.706) (-6906.434) [-6896.542] -- 0:13:00
625000 -- (-6893.149) (-6906.970) (-6891.796) [-6901.637] * (-6893.983) (-6907.170) [-6895.291] (-6901.091) -- 0:12:58
Average standard deviation of split frequencies: 0.003878
626000 -- (-6891.419) (-6885.870) (-6890.195) [-6904.793] * (-6890.062) (-6894.488) (-6894.954) [-6896.314] -- 0:12:56
627000 -- (-6907.244) [-6900.801] (-6898.267) (-6889.512) * (-6899.334) [-6891.650] (-6889.166) (-6896.476) -- 0:12:53
628000 -- (-6894.876) [-6887.404] (-6894.894) (-6904.873) * (-6894.212) (-6895.627) [-6895.126] (-6890.168) -- 0:12:51
629000 -- (-6893.070) [-6891.203] (-6900.143) (-6904.636) * (-6890.928) (-6898.649) [-6895.821] (-6899.092) -- 0:12:49
630000 -- (-6903.774) (-6888.553) (-6894.414) [-6889.367] * (-6900.245) (-6896.883) (-6899.331) [-6892.511] -- 0:12:47
Average standard deviation of split frequencies: 0.003924
631000 -- (-6889.978) (-6898.620) (-6890.830) [-6891.290] * (-6895.236) [-6889.189] (-6887.742) (-6890.648) -- 0:12:45
632000 -- (-6909.839) (-6890.114) (-6888.205) [-6885.948] * (-6904.208) (-6887.395) [-6888.940] (-6898.342) -- 0:12:43
633000 -- [-6886.990] (-6898.568) (-6893.347) (-6887.871) * (-6891.206) [-6888.167] (-6899.288) (-6896.768) -- 0:12:41
634000 -- (-6897.774) (-6900.981) (-6894.293) [-6883.185] * (-6902.309) [-6883.779] (-6900.659) (-6893.796) -- 0:12:39
635000 -- (-6897.449) (-6924.681) [-6892.019] (-6890.311) * (-6911.979) (-6900.239) [-6890.892] (-6902.606) -- 0:12:37
Average standard deviation of split frequencies: 0.003965
636000 -- (-6897.659) [-6892.789] (-6897.797) (-6903.777) * (-6902.716) (-6886.532) (-6892.669) [-6891.227] -- 0:12:34
637000 -- (-6912.924) (-6889.295) [-6897.117] (-6893.233) * (-6899.460) (-6899.206) [-6893.818] (-6895.560) -- 0:12:32
638000 -- [-6889.378] (-6895.355) (-6888.438) (-6891.453) * [-6896.344] (-6899.297) (-6890.381) (-6897.431) -- 0:12:30
639000 -- (-6897.527) (-6904.146) (-6891.055) [-6888.228] * [-6906.031] (-6892.738) (-6889.385) (-6905.135) -- 0:12:28
640000 -- (-6894.122) (-6900.582) [-6897.106] (-6893.678) * (-6896.119) (-6890.568) (-6900.198) [-6886.873] -- 0:12:26
Average standard deviation of split frequencies: 0.004120
641000 -- (-6896.806) (-6901.260) [-6896.256] (-6896.764) * (-6905.414) (-6889.457) (-6901.321) [-6904.412] -- 0:12:24
642000 -- (-6895.554) [-6898.037] (-6903.121) (-6900.337) * (-6896.198) [-6884.850] (-6905.333) (-6914.109) -- 0:12:22
643000 -- [-6892.957] (-6909.064) (-6892.891) (-6894.588) * (-6894.528) (-6898.884) (-6900.553) [-6891.804] -- 0:12:20
644000 -- [-6895.401] (-6899.860) (-6890.873) (-6891.990) * (-6904.295) [-6882.702] (-6904.798) (-6889.052) -- 0:12:18
645000 -- (-6913.412) [-6891.004] (-6894.874) (-6903.430) * (-6908.891) [-6897.164] (-6911.742) (-6895.990) -- 0:12:16
Average standard deviation of split frequencies: 0.004342
646000 -- (-6889.304) (-6888.760) [-6896.315] (-6897.936) * (-6908.516) (-6902.712) [-6899.318] (-6886.898) -- 0:12:14
647000 -- (-6902.157) (-6900.684) (-6894.159) [-6887.532] * (-6894.460) [-6897.749] (-6893.260) (-6896.721) -- 0:12:12
648000 -- [-6887.795] (-6890.153) (-6903.052) (-6898.815) * [-6897.324] (-6891.979) (-6898.215) (-6896.612) -- 0:12:10
649000 -- (-6898.056) (-6902.721) (-6900.171) [-6893.846] * (-6890.380) (-6895.861) (-6891.475) [-6895.456] -- 0:12:07
650000 -- [-6893.088] (-6886.114) (-6890.406) (-6901.108) * (-6902.561) [-6899.715] (-6901.041) (-6891.897) -- 0:12:05
Average standard deviation of split frequencies: 0.004492
651000 -- [-6890.428] (-6896.961) (-6896.209) (-6901.015) * (-6899.963) (-6889.961) [-6885.766] (-6883.617) -- 0:12:03
652000 -- (-6894.284) [-6887.274] (-6898.279) (-6915.002) * (-6889.226) (-6892.574) (-6889.736) [-6886.541] -- 0:12:01
653000 -- (-6891.619) (-6898.714) [-6894.952] (-6895.234) * [-6892.720] (-6887.386) (-6891.952) (-6895.431) -- 0:11:59
654000 -- (-6896.827) (-6893.747) (-6890.260) [-6894.432] * [-6894.873] (-6889.017) (-6889.168) (-6889.300) -- 0:11:57
655000 -- (-6914.608) (-6895.114) [-6891.140] (-6892.229) * (-6905.466) (-6897.099) (-6895.487) [-6900.376] -- 0:11:55
Average standard deviation of split frequencies: 0.004815
656000 -- (-6895.501) (-6906.663) [-6885.714] (-6885.186) * (-6902.633) (-6886.239) (-6910.244) [-6895.783] -- 0:11:53
657000 -- (-6895.789) [-6890.798] (-6890.960) (-6890.313) * (-6897.943) (-6886.815) (-6905.473) [-6889.354] -- 0:11:51
658000 -- (-6892.331) (-6902.600) (-6889.386) [-6893.094] * (-6899.817) [-6896.455] (-6893.037) (-6897.823) -- 0:11:49
659000 -- [-6895.375] (-6908.600) (-6891.895) (-6892.425) * (-6894.581) (-6887.958) (-6893.988) [-6890.258] -- 0:11:47
660000 -- (-6903.465) (-6911.622) (-6896.678) [-6893.373] * (-6894.198) (-6898.501) (-6891.797) [-6893.468] -- 0:11:45
Average standard deviation of split frequencies: 0.005209
661000 -- (-6904.133) (-6906.998) [-6896.141] (-6895.944) * (-6894.505) (-6899.907) (-6898.044) [-6900.928] -- 0:11:43
662000 -- (-6900.577) [-6897.861] (-6905.179) (-6891.924) * (-6891.055) (-6889.303) [-6894.169] (-6899.292) -- 0:11:41
663000 -- (-6901.083) [-6899.027] (-6901.421) (-6901.055) * [-6886.740] (-6893.142) (-6892.137) (-6891.854) -- 0:11:38
664000 -- (-6895.816) [-6896.055] (-6893.896) (-6898.391) * (-6895.680) [-6897.759] (-6897.173) (-6913.135) -- 0:11:36
665000 -- (-6895.914) (-6902.178) (-6892.192) [-6897.384] * [-6902.540] (-6893.225) (-6899.667) (-6897.988) -- 0:11:34
Average standard deviation of split frequencies: 0.005167
666000 -- (-6896.685) (-6893.097) (-6896.628) [-6888.360] * (-6899.452) (-6890.459) [-6891.488] (-6903.813) -- 0:11:32
667000 -- (-6889.982) (-6902.856) (-6893.433) [-6891.672] * (-6893.391) (-6888.861) [-6894.740] (-6900.993) -- 0:11:30
668000 -- [-6886.728] (-6891.724) (-6885.543) (-6889.915) * (-6890.352) (-6898.538) [-6902.312] (-6902.337) -- 0:11:28
669000 -- (-6889.513) (-6886.824) (-6891.404) [-6900.457] * [-6885.865] (-6891.906) (-6886.065) (-6892.973) -- 0:11:26
670000 -- (-6904.640) [-6890.008] (-6910.850) (-6894.310) * (-6896.647) (-6895.282) [-6896.015] (-6895.808) -- 0:11:24
Average standard deviation of split frequencies: 0.005166
671000 -- (-6900.818) [-6885.015] (-6897.286) (-6886.596) * [-6896.159] (-6895.774) (-6918.071) (-6897.288) -- 0:11:22
672000 -- [-6887.337] (-6895.535) (-6899.654) (-6902.248) * (-6893.690) (-6896.002) (-6898.930) [-6893.005] -- 0:11:20
673000 -- (-6888.528) (-6901.934) (-6906.560) [-6901.917] * (-6908.156) (-6888.830) [-6893.030] (-6896.585) -- 0:11:18
674000 -- [-6891.507] (-6895.305) (-6888.944) (-6899.043) * (-6897.603) (-6896.051) [-6900.997] (-6918.370) -- 0:11:16
675000 -- [-6894.316] (-6893.747) (-6894.238) (-6894.599) * (-6893.176) (-6896.085) [-6891.385] (-6893.869) -- 0:11:14
Average standard deviation of split frequencies: 0.005056
676000 -- [-6884.647] (-6889.396) (-6903.870) (-6896.908) * (-6892.892) [-6897.032] (-6890.301) (-6895.215) -- 0:11:11
677000 -- (-6902.197) (-6899.393) (-6887.988) [-6895.956] * (-6894.722) (-6898.908) (-6897.483) [-6888.281] -- 0:11:09
678000 -- [-6891.220] (-6896.011) (-6903.679) (-6906.255) * (-6894.047) (-6903.836) [-6895.678] (-6891.028) -- 0:11:07
679000 -- (-6895.704) (-6905.323) [-6893.610] (-6896.680) * (-6908.846) (-6899.616) (-6885.033) [-6889.705] -- 0:11:05
680000 -- (-6889.793) [-6905.103] (-6905.019) (-6906.060) * (-6903.073) (-6896.222) (-6898.634) [-6896.280] -- 0:11:03
Average standard deviation of split frequencies: 0.005263
681000 -- (-6890.494) (-6891.122) (-6895.261) [-6893.278] * (-6890.687) (-6893.738) (-6896.829) [-6894.443] -- 0:11:01
682000 -- (-6899.017) [-6891.982] (-6896.549) (-6906.091) * (-6893.993) (-6899.762) [-6899.383] (-6894.546) -- 0:10:59
683000 -- (-6901.228) (-6892.398) (-6887.929) [-6894.988] * [-6888.098] (-6915.468) (-6894.103) (-6896.819) -- 0:10:57
684000 -- (-6893.268) [-6899.667] (-6893.289) (-6906.796) * [-6900.809] (-6894.834) (-6887.894) (-6907.299) -- 0:10:55
685000 -- [-6899.793] (-6896.198) (-6895.846) (-6905.217) * (-6894.628) (-6904.614) [-6885.136] (-6891.151) -- 0:10:52
Average standard deviation of split frequencies: 0.004810
686000 -- (-6897.293) [-6888.280] (-6901.623) (-6891.312) * (-6899.710) [-6890.338] (-6901.823) (-6895.948) -- 0:10:50
687000 -- (-6896.366) (-6886.910) [-6891.308] (-6899.277) * (-6903.079) [-6897.010] (-6891.456) (-6900.979) -- 0:10:48
688000 -- [-6899.213] (-6905.099) (-6907.008) (-6901.046) * (-6906.532) (-6893.702) [-6892.959] (-6896.579) -- 0:10:47
689000 -- [-6893.607] (-6902.150) (-6903.550) (-6901.256) * (-6892.718) [-6887.678] (-6904.531) (-6889.842) -- 0:10:45
690000 -- (-6896.010) (-6909.234) [-6898.387] (-6889.714) * (-6908.452) [-6893.738] (-6897.832) (-6896.758) -- 0:10:42
Average standard deviation of split frequencies: 0.004983
691000 -- (-6894.063) (-6894.103) [-6891.375] (-6903.708) * [-6892.965] (-6903.878) (-6893.766) (-6891.208) -- 0:10:40
692000 -- [-6894.953] (-6897.403) (-6889.837) (-6889.697) * (-6897.155) (-6894.078) [-6903.157] (-6890.009) -- 0:10:38
693000 -- [-6890.059] (-6898.849) (-6892.035) (-6886.717) * (-6895.663) (-6895.815) (-6883.710) [-6886.070] -- 0:10:36
694000 -- [-6895.641] (-6890.604) (-6894.685) (-6898.163) * (-6908.866) [-6893.876] (-6889.833) (-6892.610) -- 0:10:34
695000 -- (-6902.438) [-6893.507] (-6887.496) (-6900.996) * (-6887.580) (-6900.335) [-6896.241] (-6904.484) -- 0:10:32
Average standard deviation of split frequencies: 0.005554
696000 -- [-6890.314] (-6903.335) (-6898.585) (-6906.015) * (-6895.184) (-6899.072) [-6891.447] (-6898.775) -- 0:10:30
697000 -- (-6915.652) (-6898.188) [-6889.931] (-6892.359) * (-6902.388) (-6887.482) (-6903.546) [-6888.807] -- 0:10:28
698000 -- (-6905.770) [-6897.182] (-6891.686) (-6892.897) * (-6892.057) (-6902.989) [-6887.007] (-6899.512) -- 0:10:26
699000 -- (-6909.144) [-6891.031] (-6894.403) (-6907.226) * (-6902.600) (-6894.406) [-6883.897] (-6900.910) -- 0:10:23
700000 -- (-6885.693) (-6891.143) [-6891.302] (-6898.519) * [-6890.292] (-6895.727) (-6896.042) (-6895.551) -- 0:10:22
Average standard deviation of split frequencies: 0.005786
701000 -- (-6906.668) (-6893.068) [-6888.635] (-6901.614) * (-6899.569) [-6890.965] (-6886.157) (-6910.073) -- 0:10:20
702000 -- [-6893.083] (-6889.413) (-6896.624) (-6895.405) * (-6914.702) (-6899.831) (-6890.801) [-6893.241] -- 0:10:18
703000 -- (-6889.940) [-6890.995] (-6911.085) (-6892.902) * (-6894.487) [-6894.272] (-6892.924) (-6894.498) -- 0:10:15
704000 -- (-6899.793) [-6901.372] (-6900.859) (-6886.004) * (-6895.891) (-6900.834) (-6901.181) [-6897.131] -- 0:10:13
705000 -- (-6896.307) (-6898.274) [-6898.369] (-6895.216) * (-6912.955) (-6897.624) (-6893.802) [-6891.110] -- 0:10:11
Average standard deviation of split frequencies: 0.006076
706000 -- (-6890.020) (-6907.929) [-6888.733] (-6902.816) * (-6913.001) [-6896.033] (-6891.686) (-6892.748) -- 0:10:09
707000 -- (-6905.211) [-6888.898] (-6896.418) (-6909.067) * (-6903.086) [-6877.444] (-6891.123) (-6898.657) -- 0:10:07
708000 -- (-6895.736) (-6892.298) [-6889.551] (-6904.153) * (-6896.412) [-6891.078] (-6904.828) (-6886.574) -- 0:10:05
709000 -- (-6890.392) [-6888.441] (-6903.379) (-6902.120) * (-6898.930) [-6884.426] (-6894.442) (-6904.175) -- 0:10:03
710000 -- (-6898.570) [-6896.157] (-6893.808) (-6890.228) * (-6907.369) [-6882.601] (-6908.984) (-6897.703) -- 0:10:01
Average standard deviation of split frequencies: 0.006302
711000 -- (-6910.086) (-6894.555) (-6890.880) [-6886.822] * (-6898.393) (-6898.491) (-6890.772) [-6891.287] -- 0:09:59
712000 -- (-6915.120) (-6888.686) (-6901.291) [-6889.409] * (-6889.140) (-6891.616) [-6892.942] (-6899.044) -- 0:09:57
713000 -- (-6895.437) (-6902.791) (-6892.875) [-6885.810] * (-6890.639) (-6889.950) (-6896.031) [-6887.484] -- 0:09:55
714000 -- [-6883.466] (-6901.281) (-6885.502) (-6892.198) * (-6889.517) (-6895.677) (-6896.673) [-6892.841] -- 0:09:53
715000 -- [-6882.975] (-6892.610) (-6904.582) (-6887.560) * (-6912.870) (-6902.013) [-6893.464] (-6900.530) -- 0:09:51
Average standard deviation of split frequencies: 0.006189
716000 -- (-6892.300) [-6899.463] (-6909.801) (-6895.090) * (-6899.283) (-6892.520) [-6887.364] (-6893.338) -- 0:09:49
717000 -- (-6889.324) (-6900.010) [-6890.552] (-6899.180) * (-6900.910) [-6892.025] (-6888.068) (-6896.280) -- 0:09:46
718000 -- (-6893.069) (-6899.353) [-6892.284] (-6903.538) * (-6906.323) (-6903.983) [-6895.866] (-6894.844) -- 0:09:44
719000 -- (-6904.106) (-6896.174) [-6897.847] (-6890.789) * [-6898.578] (-6893.773) (-6897.405) (-6886.273) -- 0:09:42
720000 -- (-6895.761) (-6898.733) (-6899.779) [-6888.090] * [-6885.775] (-6890.881) (-6893.727) (-6896.153) -- 0:09:40
Average standard deviation of split frequencies: 0.006214
721000 -- (-6901.859) (-6903.851) (-6893.665) [-6889.966] * (-6889.692) (-6887.332) (-6901.978) [-6897.122] -- 0:09:38
722000 -- (-6896.311) (-6899.038) [-6894.866] (-6887.920) * (-6896.870) (-6901.605) [-6898.571] (-6894.619) -- 0:09:36
723000 -- (-6891.744) (-6897.177) [-6883.593] (-6901.853) * (-6891.692) (-6887.471) [-6889.748] (-6891.979) -- 0:09:34
724000 -- (-6889.624) (-6897.381) (-6903.488) [-6899.139] * [-6891.100] (-6896.367) (-6891.536) (-6899.166) -- 0:09:32
725000 -- (-6907.343) (-6892.711) [-6887.629] (-6901.863) * (-6892.794) (-6899.406) (-6893.292) [-6891.561] -- 0:09:30
Average standard deviation of split frequencies: 0.006428
726000 -- (-6888.253) (-6905.507) (-6893.513) [-6897.514] * (-6894.511) (-6909.188) [-6891.391] (-6894.648) -- 0:09:28
727000 -- [-6891.265] (-6894.814) (-6895.510) (-6908.940) * (-6894.620) [-6893.120] (-6892.061) (-6890.663) -- 0:09:25
728000 -- (-6912.818) (-6898.177) [-6898.211] (-6890.079) * [-6885.886] (-6892.094) (-6897.238) (-6896.130) -- 0:09:23
729000 -- (-6906.892) [-6899.618] (-6907.763) (-6901.035) * (-6891.056) (-6895.436) (-6899.590) [-6890.545] -- 0:09:21
730000 -- (-6902.887) (-6896.399) (-6909.743) [-6893.424] * (-6909.606) (-6904.527) (-6901.976) [-6892.896] -- 0:09:19
Average standard deviation of split frequencies: 0.006645
731000 -- (-6905.374) (-6894.786) [-6903.951] (-6892.748) * (-6896.439) [-6886.622] (-6898.992) (-6891.844) -- 0:09:17
732000 -- [-6897.064] (-6890.841) (-6890.671) (-6903.688) * (-6889.818) (-6904.657) (-6891.219) [-6888.888] -- 0:09:15
733000 -- (-6892.000) (-6903.834) [-6886.394] (-6906.972) * [-6899.770] (-6894.074) (-6891.712) (-6894.036) -- 0:09:13
734000 -- (-6896.784) (-6892.714) (-6892.496) [-6892.283] * (-6901.880) (-6910.000) [-6888.970] (-6908.261) -- 0:09:11
735000 -- [-6891.776] (-6907.606) (-6896.835) (-6909.638) * (-6892.146) [-6885.593] (-6908.949) (-6897.373) -- 0:09:09
Average standard deviation of split frequencies: 0.006789
736000 -- (-6897.855) (-6890.105) [-6892.588] (-6894.013) * (-6884.717) (-6892.688) [-6892.788] (-6889.603) -- 0:09:07
737000 -- (-6906.020) (-6889.264) [-6885.794] (-6902.908) * (-6893.607) (-6885.519) (-6902.516) [-6892.617] -- 0:09:05
738000 -- (-6895.749) [-6891.396] (-6898.307) (-6894.852) * [-6893.981] (-6897.443) (-6901.391) (-6897.319) -- 0:09:03
739000 -- [-6896.147] (-6892.673) (-6914.920) (-6900.358) * (-6896.938) [-6885.906] (-6887.144) (-6912.979) -- 0:09:01
740000 -- (-6899.732) (-6894.009) [-6892.296] (-6895.640) * (-6893.028) (-6903.325) [-6885.086] (-6894.953) -- 0:08:58
Average standard deviation of split frequencies: 0.007160
741000 -- (-6896.329) (-6891.296) [-6897.941] (-6892.686) * [-6897.082] (-6890.834) (-6904.103) (-6896.565) -- 0:08:56
742000 -- (-6890.134) (-6892.229) (-6907.622) [-6895.510] * (-6895.066) [-6894.886] (-6896.584) (-6897.133) -- 0:08:54
743000 -- [-6890.420] (-6902.783) (-6897.286) (-6896.024) * (-6894.718) (-6891.284) (-6890.143) [-6892.090] -- 0:08:52
744000 -- [-6890.750] (-6886.257) (-6900.119) (-6909.077) * (-6894.805) (-6894.703) (-6892.309) [-6892.543] -- 0:08:50
745000 -- [-6897.352] (-6895.841) (-6901.391) (-6889.650) * (-6897.502) (-6893.923) [-6904.276] (-6892.349) -- 0:08:48
Average standard deviation of split frequencies: 0.006983
746000 -- (-6900.501) [-6890.232] (-6893.788) (-6899.060) * (-6901.737) [-6904.516] (-6904.773) (-6896.165) -- 0:08:46
747000 -- (-6887.441) (-6889.467) [-6891.490] (-6890.699) * [-6890.262] (-6892.345) (-6911.700) (-6891.795) -- 0:08:44
748000 -- [-6907.058] (-6899.396) (-6897.938) (-6890.717) * (-6898.212) (-6885.594) (-6896.091) [-6890.896] -- 0:08:42
749000 -- (-6895.630) (-6905.631) [-6891.135] (-6896.842) * (-6895.120) (-6895.029) [-6892.459] (-6894.593) -- 0:08:40
750000 -- [-6898.138] (-6908.019) (-6889.603) (-6891.942) * (-6895.512) [-6885.287] (-6918.514) (-6895.782) -- 0:08:38
Average standard deviation of split frequencies: 0.007410
751000 -- (-6896.587) (-6902.733) (-6894.138) [-6885.456] * (-6907.715) (-6896.479) [-6900.608] (-6891.242) -- 0:08:36
752000 -- [-6896.298] (-6910.261) (-6898.844) (-6900.480) * (-6893.882) (-6890.806) (-6897.570) [-6886.439] -- 0:08:34
753000 -- (-6885.589) (-6903.057) (-6903.074) [-6900.034] * (-6900.013) (-6904.387) [-6891.303] (-6889.192) -- 0:08:32
754000 -- (-6891.460) (-6900.672) (-6900.288) [-6896.945] * (-6896.185) (-6901.054) [-6905.462] (-6889.908) -- 0:08:29
755000 -- (-6898.328) [-6891.341] (-6896.114) (-6902.253) * (-6900.778) [-6901.495] (-6896.128) (-6904.055) -- 0:08:27
Average standard deviation of split frequencies: 0.007607
756000 -- (-6893.689) [-6888.535] (-6890.064) (-6894.001) * [-6899.311] (-6894.302) (-6891.006) (-6896.405) -- 0:08:25
757000 -- [-6895.402] (-6894.566) (-6902.117) (-6896.090) * (-6909.130) (-6902.503) [-6887.904] (-6900.609) -- 0:08:23
758000 -- (-6901.516) (-6897.651) [-6891.302] (-6896.350) * (-6895.290) (-6899.270) (-6909.055) [-6890.557] -- 0:08:21
759000 -- (-6888.033) (-6899.784) [-6885.892] (-6899.023) * (-6892.475) (-6895.867) [-6889.720] (-6899.819) -- 0:08:19
760000 -- (-6912.301) (-6905.160) [-6883.678] (-6906.150) * [-6889.099] (-6893.112) (-6893.847) (-6889.734) -- 0:08:17
Average standard deviation of split frequencies: 0.007530
761000 -- (-6906.684) [-6898.670] (-6902.137) (-6893.862) * [-6896.660] (-6902.024) (-6891.550) (-6894.293) -- 0:08:15
762000 -- (-6896.053) (-6908.321) [-6896.536] (-6894.269) * (-6902.191) (-6900.695) (-6897.863) [-6898.714] -- 0:08:13
763000 -- (-6892.521) (-6890.449) (-6897.405) [-6889.914] * (-6905.548) (-6891.129) [-6892.070] (-6903.245) -- 0:08:11
764000 -- [-6889.105] (-6908.601) (-6897.803) (-6894.702) * (-6885.606) (-6887.195) (-6902.761) [-6897.191] -- 0:08:09
765000 -- (-6897.684) [-6889.916] (-6913.811) (-6891.705) * (-6892.566) [-6894.000] (-6902.821) (-6898.249) -- 0:08:07
Average standard deviation of split frequencies: 0.007539
766000 -- (-6899.435) [-6896.359] (-6901.201) (-6900.422) * (-6888.616) [-6896.228] (-6901.979) (-6896.334) -- 0:08:05
767000 -- (-6892.970) (-6893.609) [-6896.307] (-6885.311) * (-6898.866) [-6889.085] (-6895.343) (-6888.229) -- 0:08:03
768000 -- (-6908.498) (-6897.742) [-6892.666] (-6895.804) * (-6902.486) [-6888.431] (-6888.315) (-6903.360) -- 0:08:00
769000 -- (-6898.212) (-6898.193) (-6898.672) [-6888.968] * [-6896.073] (-6893.293) (-6886.415) (-6893.153) -- 0:07:58
770000 -- (-6896.532) [-6891.638] (-6897.394) (-6903.640) * [-6896.856] (-6893.028) (-6893.483) (-6891.895) -- 0:07:56
Average standard deviation of split frequencies: 0.007310
771000 -- [-6894.792] (-6899.049) (-6896.389) (-6899.732) * (-6894.802) (-6890.072) [-6899.886] (-6899.213) -- 0:07:54
772000 -- [-6896.147] (-6900.361) (-6892.988) (-6902.608) * (-6894.043) [-6899.906] (-6901.320) (-6897.229) -- 0:07:52
773000 -- (-6897.408) (-6902.908) (-6898.190) [-6893.371] * (-6894.490) [-6885.617] (-6892.620) (-6892.335) -- 0:07:50
774000 -- (-6897.877) (-6900.680) [-6897.356] (-6894.612) * (-6900.147) (-6890.264) (-6897.179) [-6896.887] -- 0:07:48
775000 -- (-6903.624) [-6890.398] (-6905.351) (-6889.859) * (-6895.402) (-6888.576) (-6897.013) [-6887.714] -- 0:07:46
Average standard deviation of split frequencies: 0.007077
776000 -- (-6897.155) [-6889.039] (-6906.089) (-6898.075) * (-6894.244) (-6901.926) [-6892.966] (-6894.146) -- 0:07:44
777000 -- (-6899.245) (-6889.918) (-6890.761) [-6897.440] * [-6901.536] (-6896.284) (-6904.457) (-6897.056) -- 0:07:42
778000 -- [-6902.705] (-6901.137) (-6898.721) (-6889.681) * (-6889.353) (-6887.438) (-6906.581) [-6892.195] -- 0:07:40
779000 -- (-6900.668) (-6892.492) [-6894.486] (-6903.554) * [-6897.515] (-6907.082) (-6902.167) (-6882.729) -- 0:07:38
780000 -- (-6901.610) (-6897.060) [-6893.260] (-6892.290) * (-6901.264) (-6893.530) (-6904.257) [-6896.876] -- 0:07:36
Average standard deviation of split frequencies: 0.007095
781000 -- (-6909.610) [-6894.241] (-6908.433) (-6897.504) * (-6898.655) (-6890.383) [-6890.434] (-6886.953) -- 0:07:33
782000 -- (-6891.716) [-6892.111] (-6892.004) (-6899.870) * [-6891.437] (-6892.096) (-6888.061) (-6892.940) -- 0:07:31
783000 -- (-6894.585) (-6891.471) (-6897.157) [-6904.151] * [-6899.534] (-6908.987) (-6897.143) (-6890.669) -- 0:07:29
784000 -- (-6899.763) [-6890.713] (-6898.783) (-6903.396) * [-6898.671] (-6897.481) (-6900.022) (-6892.639) -- 0:07:27
785000 -- (-6903.908) (-6883.886) (-6901.868) [-6896.554] * [-6900.229] (-6907.475) (-6892.464) (-6898.182) -- 0:07:25
Average standard deviation of split frequencies: 0.006777
786000 -- [-6892.256] (-6903.353) (-6897.413) (-6893.605) * (-6895.828) (-6904.919) (-6890.512) [-6890.623] -- 0:07:23
787000 -- [-6892.425] (-6900.046) (-6899.797) (-6892.914) * [-6890.095] (-6904.777) (-6905.681) (-6890.993) -- 0:07:21
788000 -- (-6901.690) [-6890.952] (-6909.985) (-6888.772) * (-6903.722) [-6895.629] (-6892.193) (-6897.636) -- 0:07:19
789000 -- (-6893.765) (-6898.948) [-6892.853] (-6920.752) * (-6904.839) (-6898.890) (-6906.303) [-6897.847] -- 0:07:17
790000 -- (-6895.587) (-6898.212) [-6903.516] (-6893.883) * [-6892.115] (-6896.580) (-6905.141) (-6912.813) -- 0:07:15
Average standard deviation of split frequencies: 0.006827
791000 -- (-6894.938) (-6895.189) (-6898.840) [-6888.801] * (-6903.578) [-6893.392] (-6904.687) (-6896.304) -- 0:07:13
792000 -- [-6891.990] (-6899.756) (-6901.660) (-6893.060) * (-6899.784) (-6898.027) (-6912.402) [-6892.453] -- 0:07:11
793000 -- (-6900.329) (-6895.350) [-6891.200] (-6898.866) * (-6906.690) (-6890.736) (-6899.499) [-6885.339] -- 0:07:09
794000 -- [-6888.334] (-6900.667) (-6898.006) (-6887.033) * (-6903.402) [-6885.279] (-6890.140) (-6903.830) -- 0:07:07
795000 -- (-6901.130) (-6904.744) [-6889.016] (-6893.932) * (-6912.205) [-6889.202] (-6888.162) (-6915.910) -- 0:07:04
Average standard deviation of split frequencies: 0.006544
796000 -- (-6896.736) (-6898.952) (-6891.578) [-6891.118] * (-6902.290) (-6896.698) (-6894.755) [-6888.482] -- 0:07:02
797000 -- (-6888.788) [-6892.288] (-6888.549) (-6908.430) * (-6896.841) [-6906.809] (-6906.412) (-6899.838) -- 0:07:00
798000 -- (-6886.036) (-6920.383) [-6893.591] (-6888.426) * (-6900.361) (-6900.547) [-6894.324] (-6892.060) -- 0:06:58
799000 -- (-6906.995) (-6911.068) [-6888.862] (-6892.040) * (-6897.666) (-6898.415) [-6899.604] (-6894.510) -- 0:06:56
800000 -- [-6894.592] (-6908.409) (-6887.899) (-6902.641) * [-6887.194] (-6896.396) (-6890.657) (-6895.959) -- 0:06:54
Average standard deviation of split frequencies: 0.006418
801000 -- (-6903.652) [-6889.708] (-6900.674) (-6892.860) * (-6889.581) [-6896.922] (-6902.801) (-6899.136) -- 0:06:52
802000 -- (-6899.669) (-6899.600) (-6896.441) [-6888.742] * (-6890.775) [-6893.715] (-6895.461) (-6888.013) -- 0:06:50
803000 -- (-6902.045) (-6891.156) (-6889.055) [-6894.414] * (-6907.030) (-6898.497) (-6890.356) [-6890.281] -- 0:06:48
804000 -- [-6891.930] (-6909.174) (-6889.117) (-6907.567) * (-6906.074) (-6899.508) (-6913.593) [-6892.933] -- 0:06:46
805000 -- (-6899.194) (-6894.032) [-6891.506] (-6902.527) * (-6902.520) [-6894.286] (-6902.477) (-6893.678) -- 0:06:44
Average standard deviation of split frequencies: 0.006726
806000 -- [-6892.264] (-6896.251) (-6897.346) (-6904.203) * (-6886.479) (-6896.426) (-6897.341) [-6902.637] -- 0:06:41
807000 -- [-6892.442] (-6895.186) (-6891.345) (-6893.737) * [-6898.315] (-6899.568) (-6895.522) (-6899.111) -- 0:06:39
808000 -- (-6883.746) (-6900.016) (-6895.952) [-6890.722] * (-6914.396) (-6885.943) [-6889.073] (-6899.519) -- 0:06:37
809000 -- [-6890.089] (-6889.961) (-6882.758) (-6891.442) * (-6894.235) [-6890.862] (-6890.471) (-6895.445) -- 0:06:35
810000 -- (-6906.460) (-6901.535) [-6898.441] (-6894.416) * (-6901.034) [-6895.685] (-6889.165) (-6901.052) -- 0:06:33
Average standard deviation of split frequencies: 0.006920
811000 -- (-6896.526) [-6895.015] (-6908.754) (-6900.958) * [-6897.390] (-6899.518) (-6901.954) (-6903.692) -- 0:06:31
812000 -- [-6885.477] (-6902.900) (-6891.280) (-6906.518) * [-6896.380] (-6909.757) (-6895.602) (-6899.559) -- 0:06:29
813000 -- (-6900.909) (-6909.635) [-6885.759] (-6911.614) * [-6893.333] (-6895.678) (-6896.115) (-6888.581) -- 0:06:27
814000 -- (-6896.286) (-6905.515) [-6893.268] (-6890.024) * (-6891.535) [-6880.562] (-6888.603) (-6895.512) -- 0:06:25
815000 -- [-6890.459] (-6901.377) (-6905.985) (-6885.423) * (-6906.873) [-6894.284] (-6894.553) (-6889.509) -- 0:06:23
Average standard deviation of split frequencies: 0.006932
816000 -- [-6899.143] (-6890.028) (-6894.322) (-6913.379) * (-6893.220) (-6899.926) (-6895.470) [-6887.638] -- 0:06:21
817000 -- (-6892.876) (-6906.494) [-6883.781] (-6889.185) * (-6896.903) (-6900.509) (-6909.123) [-6885.394] -- 0:06:19
818000 -- (-6908.766) (-6901.081) (-6898.159) [-6899.104] * [-6901.261] (-6891.883) (-6890.108) (-6893.988) -- 0:06:17
819000 -- (-6896.748) [-6884.766] (-6896.647) (-6897.778) * [-6890.577] (-6894.203) (-6896.049) (-6891.779) -- 0:06:15
820000 -- (-6909.352) [-6889.090] (-6888.073) (-6908.060) * (-6896.841) (-6901.464) (-6891.298) [-6892.021] -- 0:06:12
Average standard deviation of split frequencies: 0.007008
821000 -- (-6890.967) (-6904.384) [-6891.447] (-6897.659) * [-6893.845] (-6892.753) (-6903.298) (-6905.693) -- 0:06:10
822000 -- [-6895.826] (-6900.609) (-6894.180) (-6898.099) * (-6903.241) (-6897.707) (-6902.155) [-6888.120] -- 0:06:08
823000 -- (-6892.294) (-6900.932) [-6891.907] (-6895.670) * (-6904.243) (-6901.521) [-6895.113] (-6891.710) -- 0:06:06
824000 -- (-6892.219) (-6909.322) (-6890.738) [-6889.290] * (-6900.838) [-6898.058] (-6901.609) (-6904.069) -- 0:06:04
825000 -- (-6899.190) [-6898.883] (-6889.034) (-6891.077) * (-6895.999) (-6888.478) (-6899.375) [-6895.672] -- 0:06:02
Average standard deviation of split frequencies: 0.006791
826000 -- [-6896.338] (-6907.949) (-6897.610) (-6895.716) * (-6906.450) [-6891.245] (-6899.897) (-6898.521) -- 0:06:00
827000 -- [-6889.599] (-6889.481) (-6901.817) (-6898.382) * (-6903.295) (-6890.651) (-6898.497) [-6898.355] -- 0:05:58
828000 -- [-6888.705] (-6888.997) (-6910.922) (-6903.015) * (-6887.851) (-6899.116) (-6890.290) [-6886.288] -- 0:05:56
829000 -- [-6892.954] (-6887.478) (-6899.136) (-6894.439) * (-6894.653) (-6895.693) (-6900.545) [-6894.040] -- 0:05:54
830000 -- (-6891.187) [-6896.196] (-6887.467) (-6897.252) * (-6896.649) (-6891.043) (-6893.507) [-6886.147] -- 0:05:52
Average standard deviation of split frequencies: 0.006952
831000 -- [-6895.441] (-6892.961) (-6901.059) (-6896.055) * (-6893.485) (-6902.110) (-6897.082) [-6887.509] -- 0:05:50
832000 -- [-6882.455] (-6894.222) (-6893.210) (-6900.741) * (-6894.471) (-6893.841) (-6903.116) [-6891.288] -- 0:05:48
833000 -- (-6893.394) (-6900.947) (-6896.182) [-6888.245] * (-6892.487) [-6902.556] (-6904.994) (-6897.681) -- 0:05:46
834000 -- (-6901.059) (-6886.793) [-6891.592] (-6906.996) * (-6907.077) (-6889.117) (-6901.001) [-6895.770] -- 0:05:43
835000 -- (-6905.718) (-6893.754) [-6882.912] (-6899.140) * [-6896.670] (-6899.241) (-6902.514) (-6893.724) -- 0:05:41
Average standard deviation of split frequencies: 0.006654
836000 -- (-6914.950) (-6905.149) [-6892.368] (-6888.614) * (-6889.593) (-6894.351) [-6889.193] (-6895.103) -- 0:05:39
837000 -- (-6908.094) (-6896.541) [-6893.485] (-6898.906) * (-6901.333) (-6896.085) [-6887.884] (-6904.231) -- 0:05:37
838000 -- (-6903.534) (-6896.066) (-6895.103) [-6884.626] * (-6899.440) (-6897.098) [-6888.372] (-6897.167) -- 0:05:35
839000 -- (-6896.196) (-6903.223) (-6899.028) [-6895.240] * (-6899.413) (-6895.149) [-6895.228] (-6913.631) -- 0:05:33
840000 -- (-6892.716) [-6896.486] (-6899.804) (-6889.168) * (-6892.838) (-6891.667) [-6894.655] (-6894.324) -- 0:05:31
Average standard deviation of split frequencies: 0.006280
841000 -- (-6889.027) [-6883.320] (-6888.982) (-6890.906) * (-6908.444) (-6895.072) [-6897.954] (-6888.537) -- 0:05:29
842000 -- (-6887.325) (-6901.919) [-6887.331] (-6901.358) * (-6896.052) [-6900.085] (-6893.727) (-6891.668) -- 0:05:27
843000 -- (-6891.592) (-6900.266) (-6891.488) [-6896.535] * (-6893.075) (-6888.132) (-6892.690) [-6894.027] -- 0:05:25
844000 -- [-6884.789] (-6909.649) (-6899.732) (-6907.037) * (-6899.733) [-6890.997] (-6902.865) (-6893.077) -- 0:05:23
845000 -- (-6896.670) (-6895.916) [-6896.500] (-6890.419) * (-6890.676) (-6898.310) (-6895.274) [-6883.405] -- 0:05:21
Average standard deviation of split frequencies: 0.006269
846000 -- (-6898.290) [-6903.455] (-6899.544) (-6896.673) * (-6903.206) [-6884.089] (-6900.370) (-6896.209) -- 0:05:19
847000 -- (-6892.398) (-6889.761) (-6909.914) [-6898.052] * (-6901.359) [-6885.361] (-6894.073) (-6906.758) -- 0:05:17
848000 -- (-6893.785) (-6887.151) (-6894.032) [-6891.297] * (-6900.037) [-6890.404] (-6903.366) (-6892.426) -- 0:05:14
849000 -- (-6897.819) (-6894.339) [-6892.772] (-6898.508) * (-6898.046) (-6901.115) (-6884.622) [-6891.712] -- 0:05:12
850000 -- (-6897.921) (-6904.704) (-6890.776) [-6900.191] * [-6889.152] (-6890.236) (-6911.761) (-6908.316) -- 0:05:10
Average standard deviation of split frequencies: 0.006872
851000 -- (-6896.800) (-6909.731) (-6888.944) [-6890.174] * (-6888.537) [-6904.122] (-6910.687) (-6900.682) -- 0:05:08
852000 -- [-6893.390] (-6896.271) (-6902.464) (-6892.857) * (-6889.851) [-6884.968] (-6911.034) (-6889.316) -- 0:05:06
853000 -- (-6904.942) (-6896.618) [-6899.553] (-6890.960) * [-6892.148] (-6892.075) (-6901.541) (-6892.778) -- 0:05:04
854000 -- (-6914.713) (-6901.140) (-6905.042) [-6888.515] * (-6911.237) (-6898.356) [-6890.969] (-6895.850) -- 0:05:02
855000 -- (-6896.497) (-6894.799) (-6893.800) [-6888.379] * (-6895.675) [-6901.604] (-6899.690) (-6904.399) -- 0:05:00
Average standard deviation of split frequencies: 0.006664
856000 -- [-6895.212] (-6897.388) (-6901.641) (-6884.596) * (-6897.581) [-6896.342] (-6890.047) (-6898.855) -- 0:04:58
857000 -- (-6891.681) (-6905.665) [-6889.204] (-6900.510) * (-6901.743) (-6898.633) (-6895.571) [-6880.456] -- 0:04:56
858000 -- (-6900.857) (-6907.970) [-6896.610] (-6907.269) * (-6901.700) (-6890.590) [-6894.112] (-6900.615) -- 0:04:54
859000 -- (-6894.477) (-6901.120) [-6888.207] (-6893.797) * (-6893.610) (-6908.274) [-6888.863] (-6907.093) -- 0:04:52
860000 -- (-6891.297) [-6888.213] (-6891.456) (-6893.755) * (-6896.137) (-6892.165) (-6887.954) [-6886.367] -- 0:04:50
Average standard deviation of split frequencies: 0.006792
861000 -- [-6904.824] (-6896.230) (-6895.465) (-6909.227) * (-6889.801) (-6893.489) (-6890.715) [-6888.305] -- 0:04:48
862000 -- (-6902.120) (-6891.503) (-6901.460) [-6891.612] * (-6895.502) (-6890.806) [-6895.786] (-6899.511) -- 0:04:45
863000 -- (-6899.938) (-6900.711) (-6896.978) [-6900.581] * (-6887.680) (-6893.071) [-6889.019] (-6890.204) -- 0:04:43
864000 -- (-6887.067) [-6889.304] (-6897.388) (-6902.515) * (-6886.181) (-6899.560) (-6895.571) [-6889.551] -- 0:04:41
865000 -- (-6899.775) (-6884.414) (-6900.459) [-6893.848] * (-6893.149) (-6891.554) [-6900.053] (-6891.544) -- 0:04:39
Average standard deviation of split frequencies: 0.006695
866000 -- (-6895.978) (-6899.463) [-6903.437] (-6886.276) * (-6901.860) [-6889.209] (-6895.539) (-6887.619) -- 0:04:37
867000 -- (-6906.390) (-6899.557) (-6898.787) [-6894.369] * (-6890.007) (-6888.990) (-6896.140) [-6888.155] -- 0:04:35
868000 -- (-6890.136) (-6891.578) [-6903.665] (-6898.551) * (-6895.560) (-6897.238) (-6906.120) [-6887.738] -- 0:04:33
869000 -- (-6891.684) (-6891.279) [-6904.776] (-6896.858) * [-6892.418] (-6898.454) (-6887.900) (-6901.346) -- 0:04:31
870000 -- (-6903.551) [-6888.013] (-6910.708) (-6893.645) * [-6894.747] (-6902.199) (-6891.918) (-6902.348) -- 0:04:29
Average standard deviation of split frequencies: 0.006298
871000 -- (-6891.309) (-6895.102) [-6892.609] (-6894.809) * (-6894.174) (-6897.758) (-6901.886) [-6897.961] -- 0:04:27
872000 -- (-6887.629) (-6889.949) (-6891.019) [-6894.786] * [-6899.009] (-6905.512) (-6891.046) (-6894.147) -- 0:04:25
873000 -- (-6891.358) (-6904.308) [-6900.067] (-6908.385) * (-6895.860) [-6893.670] (-6893.013) (-6896.783) -- 0:04:23
874000 -- (-6892.409) [-6898.587] (-6890.722) (-6893.585) * (-6904.889) [-6884.669] (-6899.373) (-6906.748) -- 0:04:21
875000 -- (-6885.505) (-6898.523) [-6889.521] (-6897.950) * (-6907.088) (-6891.696) (-6905.277) [-6903.910] -- 0:04:19
Average standard deviation of split frequencies: 0.005806
876000 -- [-6884.351] (-6883.011) (-6905.115) (-6888.201) * (-6903.175) (-6891.699) (-6896.658) [-6908.632] -- 0:04:16
877000 -- [-6887.388] (-6896.868) (-6899.923) (-6898.879) * (-6890.248) (-6895.587) [-6888.625] (-6894.625) -- 0:04:14
878000 -- (-6889.193) (-6890.923) [-6895.447] (-6909.556) * (-6905.658) (-6887.740) [-6892.689] (-6899.161) -- 0:04:12
879000 -- (-6900.278) [-6893.486] (-6900.879) (-6905.884) * (-6907.228) (-6889.509) [-6897.112] (-6901.375) -- 0:04:10
880000 -- (-6889.853) [-6883.982] (-6893.640) (-6901.888) * (-6894.173) (-6891.761) (-6896.667) [-6894.947] -- 0:04:08
Average standard deviation of split frequencies: 0.005353
881000 -- (-6898.931) (-6902.246) (-6890.311) [-6891.855] * (-6895.847) (-6890.618) (-6900.495) [-6895.069] -- 0:04:06
882000 -- (-6902.438) (-6898.027) (-6888.330) [-6888.363] * (-6898.852) (-6887.038) [-6896.544] (-6902.085) -- 0:04:04
883000 -- (-6893.839) (-6907.083) (-6893.624) [-6885.872] * (-6889.721) [-6900.432] (-6895.546) (-6898.659) -- 0:04:02
884000 -- (-6889.059) [-6899.314] (-6902.006) (-6897.359) * (-6890.779) (-6895.490) [-6889.741] (-6902.233) -- 0:04:00
885000 -- (-6888.093) (-6894.470) (-6897.136) [-6887.084] * (-6889.507) (-6893.000) (-6899.258) [-6894.040] -- 0:03:58
Average standard deviation of split frequencies: 0.005125
886000 -- (-6896.715) (-6887.348) [-6890.252] (-6906.636) * (-6902.977) [-6899.640] (-6900.992) (-6908.263) -- 0:03:56
887000 -- [-6897.596] (-6911.169) (-6893.277) (-6898.375) * (-6892.638) [-6888.741] (-6893.253) (-6902.826) -- 0:03:54
888000 -- (-6886.514) (-6892.675) (-6891.330) [-6890.200] * [-6882.547] (-6901.159) (-6898.904) (-6898.913) -- 0:03:52
889000 -- (-6885.222) (-6890.402) [-6891.707] (-6898.609) * [-6893.585] (-6906.042) (-6893.829) (-6893.472) -- 0:03:49
890000 -- (-6903.389) [-6891.214] (-6899.005) (-6894.109) * (-6885.442) (-6900.695) [-6880.555] (-6900.455) -- 0:03:47
Average standard deviation of split frequencies: 0.005460
891000 -- [-6903.991] (-6901.302) (-6889.068) (-6892.443) * (-6902.398) (-6907.437) [-6888.178] (-6893.151) -- 0:03:45
892000 -- (-6891.778) [-6897.165] (-6888.697) (-6905.890) * (-6902.996) (-6901.700) [-6894.407] (-6888.135) -- 0:03:43
893000 -- (-6898.854) (-6895.337) (-6901.930) [-6888.034] * [-6889.508] (-6890.977) (-6889.338) (-6901.441) -- 0:03:41
894000 -- (-6891.484) (-6900.626) [-6897.869] (-6887.805) * (-6899.861) (-6894.374) (-6886.135) [-6897.428] -- 0:03:39
895000 -- (-6886.209) (-6887.964) (-6904.412) [-6891.376] * (-6898.711) [-6884.554] (-6904.668) (-6906.691) -- 0:03:37
Average standard deviation of split frequencies: 0.005498
896000 -- [-6896.482] (-6890.303) (-6894.252) (-6905.860) * [-6891.212] (-6898.823) (-6900.942) (-6889.640) -- 0:03:35
897000 -- [-6899.840] (-6899.313) (-6905.070) (-6885.965) * (-6896.375) [-6884.097] (-6889.294) (-6900.780) -- 0:03:33
898000 -- [-6897.557] (-6891.456) (-6893.263) (-6892.688) * (-6900.512) (-6896.487) (-6888.810) [-6887.446] -- 0:03:31
899000 -- [-6892.827] (-6896.711) (-6892.448) (-6887.073) * (-6913.849) (-6897.596) [-6891.479] (-6897.280) -- 0:03:29
900000 -- (-6900.911) [-6907.459] (-6894.425) (-6886.904) * (-6897.008) (-6896.548) (-6905.025) [-6891.685] -- 0:03:27
Average standard deviation of split frequencies: 0.005234
901000 -- [-6902.309] (-6889.790) (-6892.774) (-6889.249) * (-6898.439) [-6896.900] (-6912.365) (-6892.065) -- 0:03:25
902000 -- (-6892.002) [-6885.371] (-6895.705) (-6898.929) * (-6900.649) (-6899.808) (-6893.360) [-6892.711] -- 0:03:23
903000 -- (-6891.912) (-6885.324) [-6899.881] (-6898.607) * (-6893.423) (-6908.315) (-6901.129) [-6893.619] -- 0:03:20
904000 -- (-6894.045) (-6879.031) (-6889.095) [-6889.420] * (-6898.598) (-6893.747) [-6885.731] (-6903.340) -- 0:03:18
905000 -- (-6899.486) (-6892.238) [-6884.292] (-6893.404) * (-6898.303) (-6901.007) [-6887.418] (-6891.772) -- 0:03:16
Average standard deviation of split frequencies: 0.005255
906000 -- (-6890.540) (-6893.571) [-6883.638] (-6912.825) * (-6897.975) (-6902.416) (-6905.084) [-6893.399] -- 0:03:14
907000 -- (-6892.933) (-6897.413) (-6899.831) [-6882.621] * (-6901.504) (-6905.607) (-6901.527) [-6897.816] -- 0:03:12
908000 -- (-6903.088) [-6895.733] (-6895.578) (-6896.791) * (-6895.862) [-6892.787] (-6888.684) (-6894.662) -- 0:03:10
909000 -- (-6899.232) (-6898.307) (-6894.537) [-6890.889] * (-6892.533) [-6880.986] (-6894.896) (-6896.568) -- 0:03:08
910000 -- [-6895.150] (-6890.130) (-6892.240) (-6886.415) * (-6904.920) (-6884.165) [-6895.405] (-6892.688) -- 0:03:06
Average standard deviation of split frequencies: 0.005694
911000 -- [-6891.470] (-6893.803) (-6897.520) (-6901.552) * (-6892.525) (-6900.991) [-6892.572] (-6915.254) -- 0:03:04
912000 -- (-6892.204) (-6889.018) [-6887.161] (-6904.655) * (-6889.024) (-6900.687) (-6893.570) [-6891.458] -- 0:03:02
913000 -- (-6905.258) (-6898.876) (-6893.037) [-6902.953] * [-6893.481] (-6896.512) (-6889.371) (-6899.980) -- 0:03:00
914000 -- (-6900.700) (-6891.229) (-6892.006) [-6894.429] * (-6888.734) (-6897.872) (-6903.904) [-6901.803] -- 0:02:58
915000 -- [-6897.292] (-6895.751) (-6895.792) (-6896.635) * (-6895.643) (-6893.443) (-6891.029) [-6887.936] -- 0:02:56
Average standard deviation of split frequencies: 0.005635
916000 -- [-6880.321] (-6894.207) (-6898.421) (-6900.209) * (-6892.903) (-6891.109) (-6888.823) [-6893.218] -- 0:02:53
917000 -- (-6891.883) (-6888.524) (-6906.883) [-6886.077] * (-6906.136) [-6896.302] (-6902.142) (-6895.889) -- 0:02:51
918000 -- [-6895.191] (-6909.468) (-6890.010) (-6888.098) * (-6901.505) [-6895.970] (-6901.394) (-6891.962) -- 0:02:49
919000 -- (-6891.474) (-6899.420) [-6889.037] (-6899.925) * (-6888.243) [-6889.842] (-6900.484) (-6905.431) -- 0:02:47
920000 -- (-6892.665) (-6908.434) [-6889.699] (-6915.434) * (-6899.662) (-6896.785) (-6890.818) [-6890.036] -- 0:02:45
Average standard deviation of split frequencies: 0.005444
921000 -- (-6892.011) [-6898.246] (-6901.841) (-6890.446) * (-6905.034) [-6893.011] (-6900.670) (-6891.570) -- 0:02:43
922000 -- (-6898.503) [-6889.073] (-6900.631) (-6902.671) * (-6908.366) (-6899.974) [-6899.782] (-6893.219) -- 0:02:41
923000 -- (-6898.505) [-6894.911] (-6898.040) (-6906.000) * (-6901.734) (-6894.019) [-6893.721] (-6890.171) -- 0:02:39
924000 -- (-6897.528) (-6900.981) (-6896.433) [-6896.802] * (-6898.726) [-6895.597] (-6902.287) (-6888.857) -- 0:02:37
925000 -- (-6900.498) (-6890.105) (-6902.919) [-6899.969] * [-6898.757] (-6899.913) (-6889.849) (-6898.178) -- 0:02:35
Average standard deviation of split frequencies: 0.005412
926000 -- (-6896.427) [-6891.870] (-6897.284) (-6894.740) * (-6906.986) (-6885.166) (-6899.050) [-6888.974] -- 0:02:33
927000 -- (-6904.800) (-6905.662) (-6897.817) [-6889.303] * (-6889.626) [-6899.936] (-6896.741) (-6904.131) -- 0:02:31
928000 -- (-6894.356) (-6899.466) (-6901.598) [-6885.373] * (-6901.394) [-6891.376] (-6906.049) (-6909.894) -- 0:02:29
929000 -- (-6905.614) (-6889.028) (-6892.298) [-6889.692] * [-6896.726] (-6890.991) (-6882.602) (-6900.096) -- 0:02:27
930000 -- [-6892.512] (-6895.840) (-6893.280) (-6900.972) * (-6897.284) (-6891.993) (-6888.114) [-6890.149] -- 0:02:24
Average standard deviation of split frequencies: 0.005092
931000 -- (-6892.824) (-6887.851) [-6894.328] (-6905.946) * (-6900.680) (-6910.609) [-6899.196] (-6881.544) -- 0:02:22
932000 -- (-6899.664) (-6886.060) [-6885.531] (-6886.683) * (-6910.724) [-6895.217] (-6887.930) (-6893.345) -- 0:02:20
933000 -- (-6900.615) (-6895.340) [-6878.565] (-6902.545) * (-6886.301) (-6887.968) [-6896.580] (-6890.398) -- 0:02:18
934000 -- [-6893.500] (-6895.228) (-6899.254) (-6890.639) * [-6891.876] (-6892.211) (-6902.288) (-6887.927) -- 0:02:16
935000 -- (-6908.250) [-6902.615] (-6891.876) (-6891.989) * (-6901.155) [-6887.631] (-6907.810) (-6897.894) -- 0:02:14
Average standard deviation of split frequencies: 0.005112
936000 -- (-6890.522) [-6893.540] (-6889.704) (-6900.575) * [-6899.942] (-6896.169) (-6895.880) (-6893.941) -- 0:02:12
937000 -- (-6907.874) [-6893.064] (-6902.068) (-6890.992) * (-6895.240) [-6902.736] (-6890.468) (-6893.723) -- 0:02:10
938000 -- (-6918.987) (-6885.589) (-6894.497) [-6887.725] * (-6898.869) [-6890.852] (-6895.279) (-6898.695) -- 0:02:08
939000 -- (-6902.329) (-6900.460) (-6889.731) [-6890.415] * (-6902.760) (-6890.792) [-6896.539] (-6908.442) -- 0:02:06
940000 -- (-6899.617) (-6904.747) [-6893.574] (-6897.609) * (-6895.456) (-6892.804) [-6893.677] (-6897.813) -- 0:02:04
Average standard deviation of split frequencies: 0.005262
941000 -- (-6901.180) (-6913.650) (-6897.703) [-6895.088] * (-6894.489) (-6901.519) [-6894.796] (-6893.904) -- 0:02:02
942000 -- [-6887.572] (-6905.549) (-6902.948) (-6895.870) * (-6908.603) (-6896.604) (-6896.610) [-6890.088] -- 0:02:00
943000 -- (-6888.773) (-6904.025) [-6890.773] (-6896.972) * (-6897.828) [-6890.096] (-6896.394) (-6904.713) -- 0:01:58
944000 -- [-6892.951] (-6894.494) (-6888.982) (-6894.634) * [-6887.568] (-6897.355) (-6906.877) (-6900.936) -- 0:01:55
945000 -- (-6899.551) (-6894.160) (-6897.737) [-6886.734] * (-6894.932) [-6897.751] (-6896.768) (-6908.669) -- 0:01:53
Average standard deviation of split frequencies: 0.005158
946000 -- (-6894.936) (-6900.261) (-6892.623) [-6888.672] * (-6901.819) (-6893.493) [-6889.092] (-6899.510) -- 0:01:51
947000 -- (-6912.003) (-6899.735) [-6886.349] (-6900.257) * [-6890.128] (-6901.195) (-6892.614) (-6898.901) -- 0:01:49
948000 -- (-6890.156) (-6907.198) [-6892.602] (-6892.550) * (-6897.830) (-6901.834) (-6892.509) [-6895.558] -- 0:01:47
949000 -- (-6882.551) (-6907.336) (-6900.606) [-6889.466] * (-6891.458) (-6899.753) (-6907.406) [-6894.229] -- 0:01:45
950000 -- (-6893.193) (-6905.961) [-6898.141] (-6894.312) * (-6897.932) (-6882.330) [-6892.450] (-6900.763) -- 0:01:43
Average standard deviation of split frequencies: 0.005331
951000 -- (-6892.841) (-6883.458) (-6897.319) [-6902.818] * [-6893.350] (-6890.129) (-6899.176) (-6904.717) -- 0:01:41
952000 -- (-6899.513) [-6893.102] (-6898.859) (-6889.168) * (-6898.970) [-6885.616] (-6893.669) (-6901.352) -- 0:01:39
953000 -- (-6904.058) [-6899.055] (-6896.142) (-6891.556) * [-6894.442] (-6881.711) (-6896.905) (-6894.533) -- 0:01:37
954000 -- [-6892.726] (-6899.907) (-6890.355) (-6893.540) * (-6894.365) (-6894.665) (-6901.051) [-6889.078] -- 0:01:35
955000 -- (-6908.617) (-6901.646) [-6894.749] (-6887.221) * (-6901.120) (-6894.475) [-6888.645] (-6894.520) -- 0:01:33
Average standard deviation of split frequencies: 0.005030
956000 -- (-6896.054) (-6895.998) (-6894.709) [-6896.185] * (-6901.200) (-6893.261) [-6893.659] (-6888.384) -- 0:01:31
957000 -- (-6898.472) (-6899.656) (-6895.595) [-6897.083] * (-6906.581) (-6895.075) (-6889.762) [-6886.144] -- 0:01:29
958000 -- (-6886.560) (-6901.258) [-6902.975] (-6899.667) * (-6910.989) (-6905.210) (-6893.175) [-6889.996] -- 0:01:26
959000 -- (-6902.433) (-6898.948) [-6896.431] (-6903.147) * [-6893.410] (-6899.014) (-6897.552) (-6894.561) -- 0:01:24
960000 -- (-6898.619) [-6894.763] (-6900.879) (-6889.947) * [-6885.915] (-6889.573) (-6898.315) (-6900.897) -- 0:01:22
Average standard deviation of split frequencies: 0.005010
961000 -- (-6911.307) [-6886.473] (-6895.346) (-6882.819) * (-6886.797) [-6890.140] (-6890.117) (-6908.506) -- 0:01:20
962000 -- (-6900.754) (-6897.518) [-6899.476] (-6901.809) * (-6895.196) (-6887.304) [-6887.742] (-6895.744) -- 0:01:18
963000 -- (-6897.103) [-6884.459] (-6904.377) (-6887.367) * (-6906.671) [-6892.314] (-6897.454) (-6906.447) -- 0:01:16
964000 -- (-6898.923) [-6889.591] (-6911.406) (-6905.874) * (-6893.443) (-6890.939) (-6900.733) [-6892.429] -- 0:01:14
965000 -- [-6888.153] (-6892.987) (-6889.168) (-6890.422) * [-6892.654] (-6903.876) (-6904.397) (-6896.318) -- 0:01:12
Average standard deviation of split frequencies: 0.004957
966000 -- [-6888.777] (-6903.552) (-6897.071) (-6897.674) * (-6905.196) (-6894.860) [-6889.435] (-6890.752) -- 0:01:10
967000 -- (-6896.168) (-6894.222) (-6892.864) [-6897.395] * (-6890.682) (-6888.891) (-6907.125) [-6890.601] -- 0:01:08
968000 -- (-6893.594) (-6891.461) (-6897.929) [-6905.309] * (-6903.832) (-6885.321) (-6894.701) [-6892.553] -- 0:01:06
969000 -- (-6909.613) [-6890.822] (-6893.964) (-6894.879) * [-6894.305] (-6901.438) (-6894.179) (-6895.956) -- 0:01:04
970000 -- [-6891.107] (-6897.129) (-6884.159) (-6895.587) * (-6895.924) [-6890.580] (-6891.641) (-6895.181) -- 0:01:02
Average standard deviation of split frequencies: 0.004984
971000 -- [-6892.474] (-6901.900) (-6897.908) (-6892.638) * (-6887.524) (-6889.994) [-6883.030] (-6911.507) -- 0:01:00
972000 -- [-6904.861] (-6895.884) (-6895.930) (-6889.902) * (-6891.407) [-6894.945] (-6892.029) (-6893.755) -- 0:00:57
973000 -- (-6897.440) (-6888.629) (-6890.407) [-6889.402] * (-6890.732) [-6891.460] (-6897.349) (-6888.000) -- 0:00:55
974000 -- (-6895.136) (-6895.095) (-6893.935) [-6894.389] * [-6888.080] (-6894.020) (-6890.005) (-6903.542) -- 0:00:53
975000 -- (-6893.116) (-6912.882) [-6886.921] (-6895.697) * [-6895.880] (-6897.757) (-6897.954) (-6894.075) -- 0:00:51
Average standard deviation of split frequencies: 0.005008
976000 -- (-6893.642) [-6888.236] (-6888.497) (-6899.610) * (-6903.702) [-6901.212] (-6904.629) (-6895.354) -- 0:00:49
977000 -- [-6890.889] (-6893.734) (-6902.105) (-6906.533) * [-6891.865] (-6910.208) (-6894.521) (-6894.351) -- 0:00:47
978000 -- (-6905.112) (-6893.700) [-6889.740] (-6897.739) * (-6895.784) (-6915.089) (-6904.620) [-6893.147] -- 0:00:45
979000 -- [-6892.040] (-6904.757) (-6902.494) (-6891.538) * (-6888.095) [-6897.783] (-6900.076) (-6899.425) -- 0:00:43
980000 -- (-6887.423) (-6905.394) (-6907.575) [-6900.539] * (-6893.966) [-6894.749] (-6892.174) (-6904.782) -- 0:00:41
Average standard deviation of split frequencies: 0.004680
981000 -- (-6894.506) (-6903.046) [-6898.654] (-6896.065) * (-6897.702) (-6887.856) [-6892.838] (-6907.616) -- 0:00:39
982000 -- (-6894.072) (-6909.394) (-6894.663) [-6897.766] * (-6896.048) [-6889.548] (-6903.989) (-6906.559) -- 0:00:37
983000 -- [-6893.906] (-6894.422) (-6893.423) (-6903.244) * [-6891.647] (-6901.735) (-6895.029) (-6893.276) -- 0:00:35
984000 -- [-6889.169] (-6886.009) (-6902.393) (-6903.932) * (-6909.638) [-6887.567] (-6904.414) (-6889.928) -- 0:00:33
985000 -- (-6896.376) (-6904.311) (-6896.962) [-6899.176] * [-6887.568] (-6887.290) (-6902.325) (-6890.509) -- 0:00:31
Average standard deviation of split frequencies: 0.004831
986000 -- (-6894.864) [-6882.296] (-6901.116) (-6893.967) * [-6892.264] (-6886.834) (-6906.816) (-6894.233) -- 0:00:28
987000 -- [-6886.564] (-6899.520) (-6907.696) (-6896.101) * (-6897.865) (-6895.802) [-6901.572] (-6883.666) -- 0:00:26
988000 -- (-6903.249) (-6893.569) (-6901.636) [-6896.620] * (-6895.964) [-6896.867] (-6894.652) (-6894.451) -- 0:00:24
989000 -- (-6905.533) (-6903.428) [-6900.880] (-6900.091) * (-6887.914) [-6887.628] (-6897.473) (-6898.665) -- 0:00:22
990000 -- (-6901.246) (-6901.516) [-6894.520] (-6895.872) * (-6885.528) [-6889.240] (-6896.723) (-6897.603) -- 0:00:20
Average standard deviation of split frequencies: 0.004859
991000 -- [-6883.766] (-6902.750) (-6895.876) (-6897.457) * (-6897.943) (-6892.576) (-6891.417) [-6903.572] -- 0:00:18
992000 -- [-6894.280] (-6906.448) (-6893.196) (-6896.911) * (-6888.287) (-6893.178) [-6888.800] (-6886.365) -- 0:00:16
993000 -- (-6901.332) (-6900.903) (-6899.025) [-6898.173] * (-6891.786) [-6886.066] (-6902.853) (-6894.145) -- 0:00:14
994000 -- (-6891.296) (-6890.806) [-6896.275] (-6902.241) * (-6901.118) [-6892.236] (-6906.928) (-6896.860) -- 0:00:12
995000 -- (-6900.644) [-6883.429] (-6899.597) (-6892.623) * [-6894.759] (-6896.179) (-6901.467) (-6889.765) -- 0:00:10
Average standard deviation of split frequencies: 0.004808
996000 -- (-6902.590) (-6896.331) [-6900.837] (-6895.093) * (-6905.483) (-6900.871) [-6887.341] (-6890.977) -- 0:00:08
997000 -- (-6896.032) (-6904.785) (-6896.583) [-6896.662] * (-6894.091) (-6903.472) (-6892.284) [-6891.820] -- 0:00:06
998000 -- (-6910.080) (-6912.412) [-6895.200] (-6902.727) * [-6902.112] (-6888.740) (-6894.226) (-6893.219) -- 0:00:04
999000 -- (-6900.055) [-6891.976] (-6895.758) (-6906.423) * (-6897.971) (-6901.028) (-6896.425) [-6888.015] -- 0:00:02
1000000 -- (-6911.967) [-6887.948] (-6888.714) (-6897.988) * (-6901.078) (-6892.722) (-6900.390) [-6890.693] -- 0:00:00
Average standard deviation of split frequencies: 0.004711
Analysis completed in 34 mins 31 seconds
Analysis used 2068.37 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -6876.30
Likelihood of best state for "cold" chain of run 2 was -6876.31
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
27.7 % ( 30 %) Dirichlet(Revmat{all})
45.1 % ( 34 %) Slider(Revmat{all})
16.5 % ( 21 %) Dirichlet(Pi{all})
24.3 % ( 25 %) Slider(Pi{all})
26.2 % ( 20 %) Multiplier(Alpha{1,2})
41.5 % ( 22 %) Multiplier(Alpha{3})
34.3 % ( 29 %) Slider(Pinvar{all})
4.6 % ( 1 %) ExtSPR(Tau{all},V{all})
2.5 % ( 5 %) ExtTBR(Tau{all},V{all})
6.3 % ( 5 %) NNI(Tau{all},V{all})
7.7 % ( 5 %) ParsSPR(Tau{all},V{all})
26.2 % ( 28 %) Multiplier(V{all})
21.6 % ( 24 %) Nodeslider(V{all})
24.4 % ( 26 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
27.9 % ( 25 %) Dirichlet(Revmat{all})
45.1 % ( 28 %) Slider(Revmat{all})
16.8 % ( 30 %) Dirichlet(Pi{all})
25.0 % ( 31 %) Slider(Pi{all})
25.9 % ( 28 %) Multiplier(Alpha{1,2})
41.6 % ( 22 %) Multiplier(Alpha{3})
34.1 % ( 29 %) Slider(Pinvar{all})
4.6 % ( 7 %) ExtSPR(Tau{all},V{all})
2.4 % ( 5 %) ExtTBR(Tau{all},V{all})
6.2 % ( 5 %) NNI(Tau{all},V{all})
7.8 % ( 8 %) ParsSPR(Tau{all},V{all})
26.1 % ( 16 %) Multiplier(V{all})
21.7 % ( 22 %) Nodeslider(V{all})
24.5 % ( 32 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.71 0.47 0.29
2 | 167277 0.73 0.50
3 | 166658 167240 0.75
4 | 166289 166127 166409
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.71 0.48 0.30
2 | 166510 0.73 0.51
3 | 166590 166810 0.74
4 | 166474 166562 167054
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -6889.52
| 1 2 |
| 2 2 1 |
| 1 2 |
| 1 2 |
| 1 2 21 2 1 2 1 1222 1 |
| 1 1 2 21 2 1 1 1 |
| 2 2 1 22 2 222 1 122 2 12|
| 2 * 1 1 21 111 211 11 *1 1 21 1 11 |
|*21 21 12 2112 12 2 1 11 2 2 2 |
| 2 2 1 22 12 21 2 1 2 |
| 2 222 1 12 2 |
| 1 1 2 1 1 |
| 2 1|
| |
| 1 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -6896.19
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -6882.91 -6906.40
2 -6884.11 -6905.48
--------------------------------------
TOTAL -6883.34 -6906.04
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 10.965327 1.459421 8.851227 13.502200 10.863880 1018.08 1051.88 1.000
r(A<->C){all} 0.147551 0.000292 0.113332 0.180116 0.147638 906.82 912.58 1.000
r(A<->G){all} 0.248913 0.000401 0.213136 0.290718 0.248918 907.80 989.36 1.000
r(A<->T){all} 0.111583 0.000181 0.082532 0.134608 0.111264 814.10 974.59 1.000
r(C<->G){all} 0.108698 0.000236 0.080007 0.139366 0.107996 938.55 940.11 1.000
r(C<->T){all} 0.304697 0.000452 0.259652 0.343440 0.304539 1010.79 1080.06 1.000
r(G<->T){all} 0.078557 0.000135 0.056048 0.101163 0.077937 918.18 1148.99 1.000
pi(A){all} 0.252837 0.000084 0.233630 0.269715 0.252680 915.20 1104.96 1.000
pi(C){all} 0.224048 0.000070 0.207925 0.240550 0.224080 1056.10 1119.98 1.000
pi(G){all} 0.218193 0.000085 0.200090 0.235390 0.218098 1025.58 1052.51 1.000
pi(T){all} 0.304921 0.000101 0.283051 0.322434 0.304976 1017.03 1052.91 1.000
alpha{1,2} 0.431969 0.001736 0.360063 0.518188 0.428836 1030.14 1123.97 1.000
alpha{3} 4.130119 1.322120 2.121654 6.269587 3.989915 1425.21 1436.81 1.001
pinvar{all} 0.025931 0.000157 0.004013 0.051202 0.024625 1425.00 1463.00 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C1
2 -- C10
3 -- C11
4 -- C12
5 -- C13
6 -- C14
7 -- C15
8 -- C16
9 -- C17
10 -- C18
11 -- C19
12 -- C2
13 -- C3
14 -- C4
15 -- C5
16 -- C6
17 -- C7
18 -- C8
19 -- C9
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
-------------------------
1 -- .******************
2 -- .*.................
3 -- ..*................
4 -- ...*...............
5 -- ....*..............
6 -- .....*.............
7 -- ......*............
8 -- .......*...........
9 -- ........*..........
10 -- .........*.........
11 -- ..........*........
12 -- ...........*.......
13 -- ............*......
14 -- .............*.....
15 -- ..............*....
16 -- ...............*...
17 -- ................*..
18 -- .................*.
19 -- ..................*
20 -- .....*...**........
21 -- .*................*
22 -- ..***.*........*...
23 -- .............**....
24 -- .*...........**.***
25 -- .*...............**
26 -- .******..**..******
27 -- ..*............*...
28 -- ...**.*............
29 -- ...**..............
30 -- .*..............***
31 -- ...........**......
32 -- .******..**********
33 -- .******.***********
34 -- .*...*...**..**.***
35 -- .........**........
36 -- .....*...*.........
37 -- ..*****..**....*...
38 -- .....*....*........
-------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
20 3002 1.000000 0.000000 1.000000 1.000000 2
21 3002 1.000000 0.000000 1.000000 1.000000 2
22 3002 1.000000 0.000000 1.000000 1.000000 2
23 3002 1.000000 0.000000 1.000000 1.000000 2
24 3002 1.000000 0.000000 1.000000 1.000000 2
25 3002 1.000000 0.000000 1.000000 1.000000 2
26 3002 1.000000 0.000000 1.000000 1.000000 2
27 3001 0.999667 0.000471 0.999334 1.000000 2
28 2995 0.997668 0.001413 0.996669 0.998668 2
29 2992 0.996669 0.000000 0.996669 0.996669 2
30 2991 0.996336 0.001413 0.995336 0.997335 2
31 2755 0.917722 0.021199 0.902732 0.932712 2
32 2481 0.826449 0.008951 0.820120 0.832778 2
33 2383 0.793804 0.004240 0.790806 0.796802 2
34 2205 0.734510 0.010835 0.726849 0.742172 2
35 1654 0.550966 0.000942 0.550300 0.551632 2
36 864 0.287808 0.015075 0.277149 0.298468 2
37 643 0.214191 0.010835 0.206529 0.221852 2
38 484 0.161226 0.014133 0.151233 0.171219 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.009190 0.000022 0.001311 0.018028 0.008456 1.000 2
length{all}[2] 0.002409 0.000006 0.000000 0.006991 0.001692 1.000 2
length{all}[3] 0.461242 0.005898 0.310694 0.606569 0.458450 1.000 2
length{all}[4] 0.002285 0.000005 0.000001 0.006826 0.001630 1.000 2
length{all}[5] 0.002301 0.000005 0.000000 0.006815 0.001618 1.000 2
length{all}[6] 0.486737 0.012026 0.267261 0.680935 0.495558 1.000 2
length{all}[7] 0.055445 0.000645 0.007979 0.103916 0.053522 1.000 2
length{all}[8] 0.006861 0.000016 0.000311 0.014845 0.006050 1.000 2
length{all}[9] 0.011050 0.000031 0.001818 0.022151 0.010318 1.000 2
length{all}[10] 0.180449 0.002334 0.084411 0.274222 0.179586 1.000 2
length{all}[11] 0.257076 0.005516 0.098205 0.398479 0.265341 1.000 2
length{all}[12] 0.002281 0.000005 0.000002 0.006870 0.001574 1.000 2
length{all}[13] 0.002402 0.000006 0.000000 0.007261 0.001672 1.000 2
length{all}[14] 0.006787 0.000026 0.000020 0.016599 0.005737 1.000 2
length{all}[15] 0.007054 0.000026 0.000005 0.016543 0.006213 1.000 2
length{all}[16] 0.333870 0.004538 0.202847 0.466657 0.331440 1.000 2
length{all}[17] 0.153366 0.002461 0.056658 0.243524 0.152218 1.000 2
length{all}[18] 0.166620 0.001014 0.110552 0.234078 0.164404 1.000 2
length{all}[19] 0.004527 0.000011 0.000088 0.010930 0.003762 1.000 2
length{all}[20] 1.104731 0.091645 0.553339 1.692742 1.077204 1.000 2
length{all}[21] 0.140292 0.000846 0.089430 0.202434 0.138641 1.000 2
length{all}[22] 0.834556 0.048681 0.407655 1.260990 0.820313 1.001 2
length{all}[23] 0.652541 0.038201 0.300393 1.041159 0.638257 1.000 2
length{all}[24] 2.572197 0.331661 1.521291 3.729432 2.492801 1.000 2
length{all}[25] 0.192860 0.002707 0.093015 0.292489 0.189987 1.000 2
length{all}[26] 1.509051 0.099737 0.912873 2.115490 1.478744 1.000 2
length{all}[27] 0.338585 0.013055 0.129332 0.565775 0.329866 1.000 2
length{all}[28] 0.341317 0.011748 0.147067 0.565969 0.341535 1.001 2
length{all}[29] 0.059834 0.000636 0.011756 0.109702 0.058709 1.000 2
length{all}[30] 0.529835 0.033468 0.196994 0.901078 0.521200 1.001 2
length{all}[31] 0.031874 0.000458 0.000012 0.069761 0.029512 1.000 2
length{all}[32] 0.038336 0.000368 0.000467 0.070055 0.038495 1.000 2
length{all}[33] 0.005265 0.000014 0.000022 0.012509 0.004476 1.001 2
length{all}[34] 0.389553 0.048195 0.015167 0.791235 0.364475 1.000 2
length{all}[35] 0.143023 0.006509 0.000769 0.290012 0.136359 1.000 2
length{all}[36] 0.114258 0.005088 0.001056 0.245432 0.105586 1.000 2
length{all}[37] 0.265910 0.031561 0.000332 0.595256 0.233205 1.001 2
length{all}[38] 0.066267 0.001813 0.000639 0.144183 0.060077 0.998 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.004711
Maximum standard deviation of split frequencies = 0.021199
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.001
Clade credibility values:
/---------------------------------------------------------------------- C1 (1)
|
|---------------------------------------------------------------------- C16 (8)
|
| /-------- C10 (2)
| /--100--+
| | \-------- C9 (19)
| /--100-+
| | \---------------- C8 (18)
| /--100--+
| | \----------------------- C7 (17)
| /--100--+
| | | /-------- C4 (14)
| | \----------100---------+
| | \-------- C5 (15)
| /---73--+
+ | | /---------------- C14 (6)
| | | |
| | \----------100---------+ /-------- C18 (10)
| | \---55--+
| | \-------- C19 (11)
| /--100-+
| | | /-------- C11 (3)
| | | /------100-----+
| | | | \-------- C6 (16)
| | | |
| | \----------100----------+ /-------- C12 (4)
| /---83--+ | /--100--+
| | | | | \-------- C13 (5)
| | | \--100-+
| | | \---------------- C15 (7)
| | |
\---79--+ | /-------- C2 (12)
| \----------------------92---------------------+
| \-------- C3 (13)
|
\-------------------------------------------------------------- C17 (9)
Phylogram (based on average branch lengths):
/ C1 (1)
|
| C16 (8)
|
| / C10 (2)
| /-+
| | \ C9 (19)
| /--+
| | \-- C8 (18)
| /------+
| | \-- C7 (17)
| /---------------------------------+
| | | / C4 (14)
| | \--------+
| | \ C5 (15)
| /---+
+ | | /------- C14 (6)
| | | |
| | \--------------+ /-- C18 (10)
| | \-+
| | \--- C19 (11)
|/-------------------+
|| | /------ C11 (3)
|| | /---+
|| | | \----- C6 (16)
|| | |
|| \----------+ / C12 (4)
|+ | /+
|| | |\ C13 (5)
|| \---+
|| \- C15 (7)
||
|| C2 (12)
||
|\ C3 (13)
|
\ C17 (9)
|------------| 1.000 expected changes per site
Calculating tree probabilities...
Credible sets of trees (146 trees sampled):
50 % credible set contains 4 trees
90 % credible set contains 38 trees
95 % credible set contains 60 trees
99 % credible set contains 116 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Thu Oct 27 00:03:58 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.06 sec, SCORE=1000, Nseq=19, Len=246
C1 -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWI
C2 -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWI
C3 -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWI
C4 ------------------MSGSNHTVPVGEVLEHLRNWSFAWNIILTVLI
C5 ------------------MSGSNQTVPVGEVLEHLRNWSFAWNIILTVLI
C6 ------------------MTESNATLPKAEVLAAVRDWNFTLSLFLLFIT
C7 MNIFCLLCVMALVPYTFADSSTNNSIPVDQVVEHLRNWNFSWNIILTVFL
C8 -------------------MTDNGTISVEQVVAHLRNWNFSWNVILTVFL
C9 -----------------MSNSTSGTIPVEQVVEHLRNWNFSWNVILTIFL
C10 -----------------MSNSTSGTIPVEQVVEHLRNWNFSWNVILTIFL
C11 ----------------MSGECNNNTVSRTEVIAALKDWNFAVSVLLLFIT
C12 ------------------MSSSNSTFSKEEVFKAVKDWNFAVAILLLFVT
C13 ------------------MSSSNSTFSKEEVFKAVKDWNFAVAILLLFVT
C14 -------------------MSSNGSLTKDEVVNIIKDWNFSWSIIFLLIT
C15 ------------------MSSDNSTFSKEEVFKAVRDWNFAVAILLLFVT
C16 -------------------MADNGTISVEELKRLLEQWNLVIGFLFLAWI
C17 -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWI
C18 -------------------MSNMTQLTEQQIISIIKDWNFAWSLIFLLIT
C19 --------------------MSNSSLTNEQIVSIIKDWNFAWSIIFLLIT
.. :: :.:*.: .::
C1 MLLQFAYSNRNRLLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGI
C2 MLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGI
C3 MLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGI
C4 VMLQYGNFKYSKILYGIKMAVLWLLWPCVIALSVTNAWADFNVNWAYFGI
C5 VMLQYGNFKYSKILYGIKMAVLWLLWPCVIALSVTNAWADFNVNWAYFGI
C6 ILLQWGYPSRCKPLWVVKMCILWLLWPLSIAAAVFAAV--YPINQVAFGF
C7 VVLQYGQYKYSVVLYVLKMLVLWLLWPLVLALSIFDAVVSFGDNWTYFAF
C8 IVLQYGHYKYSVVLYSLKMMILWLLWPLVLALSIFDSWASFGVNWTFFAF
C9 IVLQYGQYKYSVVLYGLKMLILWLLWPLVLALSIFDSWASFGVNWTFFAF
C10 IVLQYGQYKYSVVLYGLKMLILWLLWPLVLALSIFDSWASFGVNWTFFAF
C11 VLLQWGYPSRCKPIWVIKMFILWLLWPLSIAAAVFAAI--HPINSVSFGF
C12 ILLQWGYPSRVKAIWVVKMFILWLLWPVSIAASVFAAV--YPINKVAFGF
C13 ILLQWGYPSRVKAIWVVKMFILWLLWPVSIAASVFAAV--YPINKVAFGF
C14 IVLQYGYPSRSMTVYVFKMFILWLLWPASMALSIFSAI--YPISLASQII
C15 ILLQWGYPSRIKAIWVVKMFILWLLWPVSIAASVFAAV--YPINKVAFGF
C16 MLLQFAYSNRNRLLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGI
C17 MLLQFAYSNRNRLLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGI
C18 IVLQYGYPSRSMTVYVFKMFVLWLLWPSSMALSIFSAV--YPIDLASQII
C19 IVLQYGYPSRSMTVYVFKMFVLWLLWPASMALSIFSAI--YPVDLSTQII
::**:. . :: .*: .****** :* : : . . :
C1 AIAMACIVGLMWLSYFFASFRLFARTRSMWSFNPETNILLNVPLRGTIVT
C2 AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVT
C3 AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVT
C4 SIFMLVVTLVLWIMYFLNSFRLYRRTRSFWAFNPETDSIIVFSVYGTTYS
C5 SIFMLVVTLVLWIMYFLNSFRLYRRTRSFWAFNPETDSIIVFSVYGTTYS
C6 AIAFACISGLMWLCYFISSFRLLCRTGSAWSFMPETDMLLNVPLLGRTVT
C7 SILMACITFVLWIMYFANSFRLYRRTNSFWAFNPETDAIITLSVLGRQVS
C8 SILMCCITFILWVMYFVNSFRLYRRTQTFWAFNPETDAIMTLSVLGRQVS
C9 SILMSCLTLILWMMYFINSFRLYRRTQTFWAFNPETDAIITLSVFGRQVS
C10 SILMSCITLILWMMYFINSFRLYRRTQTFWAFNPETDAIITLSVFGRQVS
C11 AIAFACISGIMWLSYFISSFRLLCRTGSAWSFMPETDMLINIPLLGRTVT
C12 AIAFACITALMWLSYFVSSLRLLCRTGSWWAFMPETNMLLNVPFIGRTVT
C13 AIAFACITALMWLSYFVSSLRLLCRTGSWWAFMPETNMLLNVPFIGRTVT
C14 SGILAAACAGMWLAYFIQSIRLFMRTGSWWSFNPESNCLLNVPIGGTTVV
C15 AIAFACITALMWLSYFVSSLRLLCRTGSWWAFMPETNMLLNVPFIGRTVT
C16 AIAMACIVGLMWLSYFFASFRLFARTRSMWSFNPETNILLNVPLRGTIVT
C17 AIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVT
C18 SGIIAGVSALMWISYFVQSIRLFMRTGSWWSFNPETNCLLNVPLGGTTVV
C19 SGIIAFISACMWISYFVQSIRLFMRTGSWWSFNPETNCLLNVPIGGTTVV
: : :*: ** *:** ** : *:* **:: :: ... *
C1 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSY
C2 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSY
C3 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSY
C4 IPVIQAPQGITFTILSGTLLVDGIKIATAVRIDALPQYVTVAKATTTIVF
C5 IPVIQAPQGITFTILSGTLLVDGIKIATAVRIDALPQYVTVAKATTTIVF
C6 RPILADSPAIQFLLVRGEIQFEGFKLGR-CDPGDMPDIVTVAKPA-SLHW
C7 IPIIVAPTGITLTCLNGTLLVEGIKVATGVQVSQLPTYITVAKPTTTIVY
C8 IPVIVAPTGITLTVLSGTLLMEGIKVATGVQVNQLPSYITVAKPTTTIIY
C9 IPTIVAPTGITLTVLSGTLLVEGIKVATGVQVSQLPTYITVAKPSTTIVY
C10 IPTIVAPTGITLTVLSGTLLVEGIKVATGVQVSQLPTYITVAKPSTTIVY
C11 RPIIADSPAVQFLIIRGELRFDGFTLGR-CDPNDMPDIVTIARPN-SLHW
C12 RPILNDSAALQFFILRGQVQFEGFVLGK-CAPTEMPEVVTVAKAG-SLVW
C13 RPILNDSAALQFFILRGQVQFEGFVLGK-CAPTEMPEVVTVAKAG-SLVW
C14 RPLVEDSTSVTAVVNDGHLKMAGMHFGR-CDYDRLPMEITVAKPS-VLIA
C15 RPILNDSAALQFFVLRGQVQFDGFILGK-CAPQEMPEVVTVAKAS-SLVW
C16 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSY
C17 RPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSY
C18 RPLVEDSTSVTAVVANGYLKMAGMHFGA-CDYDRLPSEVTVAKPN-VLIA
C19 RPLVEDSTSVTAVVTNGYLKIAGMHFGQ-CDYRSLPNEVTVAKPN-VLIA
* : : * : . * .. :* :*:* . :
C1 YKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHSGS--NDNIALLVQ
C2 YKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHAGS--NDNIALLVQ
C3 YKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHAGS--NDNIALLVQ
C4 HRVGKAVNERTQTGWLFFVRSGYGDYAAHSTGTGQMTESEKLLHIA
C5 HRVGKAVNERTQTGWLFFVRSGYGDYAAHSTGTGQMTESEKLLHIA
C6 YKKALTRNIGVKSAIIVYIKYKVGNHRVQNTTEDG---ERLAMFVA
C7 QRAGRSLNARSNTGWAFYVRSKNGDYSAVTSGVESITEEEKVLHLV
C8 QRAGRSLNTRSQTGWAFYVRSKNGDYSAVTSHSDSVTDEEKVLHLV
C9 QRAGRSLNTRSNTGWAFYVRSKNGDYSAVASHSDSLTEDEKVLHLV
C10 QRAGRSLNTRSNTGWAFYVRSKNGDYSAVASHSDSLTEDEKVLHLV
C11 YKRALTRNIGTRSAILVYIKYKVGNHRVQNTTEDG---DRLAMFAA
C12 YKKALTRTVGPKSGVVVYIKFKVGNHRVQNANDDD---GQLAMFLA
C13 YKKALTRTVGPKSGVVVYIKFKVGNHRVQNANDDD---GQLAMFLA
C14 LKMVKRQSYGTNSGVAIFHRYKAGNYRWPTIIQDE----ELALLRA
C15 YKKALTRTVGPKSGVVVYIKFKVGNHRVQNANDDD---GQLAMFLA
C16 YKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHSGS--NDNIALLVQ
C17 YKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHSGS--NDNIALLVQ
C18 LKMVKRQSYGTNSGVAIYHRYKAGNYRSPPITADS----ELALLRA
C19 LKMVKRQDYGTNSGVAIYHRYKAGNYRRPAIVPDA----ELALLRA
: :. : : *:: . :
-- Starting log on Thu Oct 27 03:59:32 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus.result/original_alignment/codeml,JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C1 738 sites
reading seq# 2 C2 738 sites
reading seq# 3 C3 738 sites
reading seq# 4 C4 738 sites
reading seq# 5 C5 738 sites
reading seq# 6 C6 738 sites
reading seq# 7 C7 738 sites
reading seq# 8 C8 738 sites
reading seq# 9 C9 738 sites
reading seq#10 C10 738 sites
reading seq#11 C11 738 sites
reading seq#12 C12 738 sites
reading seq#13 C13 738 sites
reading seq#14 C14 738 sites
reading seq#15 C15 738 sites
reading seq#16 C16 738 sites
reading seq#17 C17 738 sites
reading seq#18 C18 738 sites
reading seq#19 C19 738 sitesns = 19 ls = 738
Reading sequences, sequential format..
Reading seq # 1: C1
Reading seq # 2: C2
Reading seq # 3: C3
Reading seq # 4: C4
Reading seq # 5: C5
Reading seq # 6: C6
Reading seq # 7: C7
Reading seq # 8: C8
Reading seq # 9: C9
Reading seq #10: C10
Reading seq #11: C11
Reading seq #12: C12
Reading seq #13: C13
Reading seq #14: C14
Reading seq #15: C15
Reading seq #16: C16
Reading seq #17: C17
Reading seq #18: C18
Reading seq #19: C19
Sites with gaps or missing data are removed.
75 ambiguity characters in seq. 1
75 ambiguity characters in seq. 2
75 ambiguity characters in seq. 3
54 ambiguity characters in seq. 4
54 ambiguity characters in seq. 5
75 ambiguity characters in seq. 6
57 ambiguity characters in seq. 8
51 ambiguity characters in seq. 9
51 ambiguity characters in seq. 10
69 ambiguity characters in seq. 11
75 ambiguity characters in seq. 12
75 ambiguity characters in seq. 13
81 ambiguity characters in seq. 14
75 ambiguity characters in seq. 15
75 ambiguity characters in seq. 16
75 ambiguity characters in seq. 17
81 ambiguity characters in seq. 18
84 ambiguity characters in seq. 19
28 sites are removed. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 89 90 179 196 236 237 238 239
Sequences read..
Counting site patterns.. 0:00
Compressing, 214 patterns at 218 / 218 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 214 patterns at 218 / 218 sites (100.0%), 0:00
Counting codons..
1368 bytes for distance
208864 bytes for conP
18832 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(1, 16, ((((((((10, 9), 8), 7), (4, 5)), (14, (18, 19))), ((11, 6), ((12, 13), 15))), (2, 3)), 17)); MP score: 1281
1775344 bytes for conP, adjusted
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
22
0.028049 0.014216 0.078948 0.102381 0.048352 0.048319 0.066386 0.014601 0.067802 0.027210 0.053721 0.095578 0.108677 0.016103 0.060838 0.033595 0.019682 0.019389 0.077230 0.030212 0.035048 0.082133 0.088243 0.102701 0.078460 0.055557 0.089106 0.059042 0.016486 0.087406 0.078940 0.043913 0.041220 0.073169 0.101946 0.300000 0.576441 0.234009
ntime & nrate & np: 35 2 38
Bounds (np=38):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 12.879660
np = 38
lnL0 = -9616.823638
Iterating by ming2
Initial: fx= 9616.823638
x= 0.02805 0.01422 0.07895 0.10238 0.04835 0.04832 0.06639 0.01460 0.06780 0.02721 0.05372 0.09558 0.10868 0.01610 0.06084 0.03360 0.01968 0.01939 0.07723 0.03021 0.03505 0.08213 0.08824 0.10270 0.07846 0.05556 0.08911 0.05904 0.01649 0.08741 0.07894 0.04391 0.04122 0.07317 0.10195 0.30000 0.57644 0.23401
1 h-m-p 0.0000 0.0001 9031.3427 ++ 8023.877088 m 0.0001 43 | 1/38
2 h-m-p 0.0000 0.0001 1878.5550 ++ 7759.933813 m 0.0001 84 | 2/38
3 h-m-p 0.0000 0.0000 3949.7958 ++ 7679.640084 m 0.0000 125 | 3/38
4 h-m-p 0.0000 0.0000 11444.5053 ++ 7607.717034 m 0.0000 166 | 4/38
5 h-m-p 0.0000 0.0000 2086.1682 ++ 7572.486831 m 0.0000 207 | 5/38
6 h-m-p 0.0000 0.0000 1716.4919 +YYCYCYC 7545.979521 6 0.0000 258 | 5/38
7 h-m-p 0.0000 0.0000 4454.9280 ++ 7507.477358 m 0.0000 299 | 5/38
8 h-m-p 0.0000 0.0000 4435.5831 CCCC 7502.262142 3 0.0000 346 | 5/38
9 h-m-p 0.0001 0.0004 482.7988 CCC 7495.776692 2 0.0001 391 | 5/38
10 h-m-p 0.0003 0.0038 134.1818 YCCC 7491.397310 3 0.0005 437 | 5/38
11 h-m-p 0.0002 0.0008 135.8755 CCCCC 7488.621423 4 0.0003 486 | 5/38
12 h-m-p 0.0003 0.0013 110.0323 +YCCC 7481.093543 3 0.0008 533 | 5/38
13 h-m-p 0.0004 0.0022 128.9850 +YCCC 7460.465193 3 0.0013 580 | 5/38
14 h-m-p 0.0004 0.0021 156.5799 +YCYCCC 7425.211627 5 0.0011 630 | 5/38
15 h-m-p 0.0002 0.0008 468.5214 +CC 7383.331901 1 0.0006 674 | 5/38
16 h-m-p 0.0002 0.0010 233.3694 +YCCC 7370.103339 3 0.0006 721 | 5/38
17 h-m-p 0.0004 0.0020 135.5778 YCCC 7363.923790 3 0.0008 767 | 5/38
18 h-m-p 0.0005 0.0027 67.4429 CCC 7362.393015 2 0.0008 812 | 5/38
19 h-m-p 0.0009 0.0043 37.7372 CC 7361.765851 1 0.0009 855 | 5/38
20 h-m-p 0.0005 0.0024 26.8564 YC 7361.335569 1 0.0009 897 | 5/38
21 h-m-p 0.0009 0.0073 25.1770 YCCC 7359.999461 3 0.0019 943 | 5/38
22 h-m-p 0.0023 0.0166 20.8841 +YCCC 7348.157673 3 0.0077 990 | 5/38
23 h-m-p 0.0002 0.0009 117.4118 ++ 7328.531775 m 0.0009 1031 | 5/38
24 h-m-p -0.0000 -0.0000 91.0581
h-m-p: -2.69564299e-20 -1.34782149e-19 9.10580636e+01 7328.531775
.. | 5/38
25 h-m-p 0.0000 0.0001 2206.6045 ++ 7284.602506 m 0.0001 1110 | 4/38
26 h-m-p 0.0000 0.0000 172841.3406 ++ 7276.498075 m 0.0000 1151 | 4/38
27 h-m-p 0.0000 0.0000 1384.2254 ++ 7276.189096 m 0.0000 1192 | 5/38
28 h-m-p 0.0000 0.0000 3318.8259 ++ 7193.591207 m 0.0000 1233 | 5/38
29 h-m-p -0.0000 -0.0000 5412.3843
h-m-p: -9.46050262e-20 -4.73025131e-19 5.41238427e+03 7193.591207
.. | 5/38
30 h-m-p 0.0000 0.0005 2424.6473 YYYYYC 7184.618827 5 0.0000 1317 | 5/38
31 h-m-p 0.0000 0.0001 839.5341 ++ 7136.482973 m 0.0001 1358 | 4/38
32 h-m-p 0.0000 0.0000 72818.7517
h-m-p: 3.92134816e-24 1.96067408e-23 7.28187517e+04 7136.482973
.. | 4/38
33 h-m-p 0.0000 0.0001 232699.4140 ---YYCCYC 7130.675171 5 0.0000 1449 | 4/38
34 h-m-p 0.0000 0.0000 768.4268 ++ 7130.527855 m 0.0000 1490 | 5/38
35 h-m-p 0.0000 0.0001 1936.2381 ++ 7019.400913 m 0.0001 1531 | 5/38
36 h-m-p 0.0000 0.0001 1115.0443 +CYCCC 6998.054661 4 0.0001 1581 | 5/38
37 h-m-p 0.0000 0.0002 1256.7688 +YYYCCC 6972.364336 5 0.0001 1630 | 5/38
38 h-m-p 0.0001 0.0006 1400.8186 YYCCC 6954.678939 4 0.0001 1677 | 5/38
39 h-m-p 0.0001 0.0004 557.3794 +YCCCC 6938.781341 4 0.0002 1726 | 5/38
40 h-m-p 0.0001 0.0004 139.3822 +CYC 6935.216406 2 0.0003 1772 | 5/38
41 h-m-p 0.0001 0.0005 495.2573 +YCYCCC 6923.169249 5 0.0004 1822 | 5/38
42 h-m-p 0.0002 0.0010 111.3957 +YCC 6919.760460 2 0.0009 1867 | 5/38
43 h-m-p 0.0001 0.0004 154.2077 ++ 6917.883685 m 0.0004 1908 | 6/38
44 h-m-p 0.0006 0.0031 86.8504 ++ 6871.046110 m 0.0031 1949 | 5/38
45 h-m-p 0.0000 0.0000 1130.0864 +YYCYC 6867.824092 4 0.0000 1996 | 5/38
46 h-m-p 0.0000 0.0000 1355.4186 YCCC 6867.340976 3 0.0000 2042 | 5/38
47 h-m-p 0.0001 0.0008 103.8732 +YC 6866.342955 1 0.0004 2085 | 5/38
48 h-m-p 0.0006 0.0028 59.5033 ++ 6863.735779 m 0.0028 2126 | 5/38
49 h-m-p 0.0011 0.0054 55.9012 YCCC 6861.963935 3 0.0020 2172 | 5/38
50 h-m-p 0.0008 0.0038 52.3059 +YCC 6859.809265 2 0.0025 2217 | 5/38
51 h-m-p 0.0013 0.0065 35.2481 ++ 6855.956882 m 0.0065 2258 | 5/38
52 h-m-p 0.0019 0.0093 48.6880 +YYYYYCCC 6847.117156 7 0.0075 2309 | 5/38
53 h-m-p 0.0047 0.0234 25.7593 YCCC 6839.206509 3 0.0098 2355 | 5/38
54 h-m-p 0.0024 0.0118 36.2454 +CYC 6823.174315 2 0.0095 2400 | 5/38
55 h-m-p 0.0028 0.0141 53.6308 +YCCC 6796.776899 3 0.0087 2447 | 5/38
56 h-m-p 0.0013 0.0066 95.8634 +YYCCC 6767.492566 4 0.0047 2495 | 5/38
57 h-m-p 0.0005 0.0024 99.1732 ++ 6752.591489 m 0.0024 2536 | 5/38
58 h-m-p 0.0000 0.0000 58.9300
h-m-p: 3.99177086e-20 1.99588543e-19 5.89300429e+01 6752.591489
.. | 5/38
59 h-m-p 0.0000 0.0001 594.0657 +YCCYC 6736.613663 4 0.0001 2623 | 5/38
60 h-m-p 0.0000 0.0001 456.1826 ++ 6730.006911 m 0.0001 2664 | 5/38
61 h-m-p 0.0000 0.0000 1226.6192 +YYYCCC 6724.912397 5 0.0000 2713 | 5/38
62 h-m-p 0.0000 0.0000 2269.2367 ++ 6716.535604 m 0.0000 2754 | 5/38
63 h-m-p 0.0000 0.0000 1053.7361
h-m-p: 1.23937281e-21 6.19686404e-21 1.05373608e+03 6716.535604
.. | 5/38
64 h-m-p 0.0000 0.0001 527.4957 +CC 6712.146318 1 0.0000 2836 | 5/38
65 h-m-p 0.0000 0.0001 237.5662 +YYCCC 6709.689708 4 0.0001 2884 | 5/38
66 h-m-p 0.0000 0.0001 508.4022 +CYC 6706.463151 2 0.0001 2929 | 5/38
67 h-m-p 0.0000 0.0001 818.5548 +YYYCYCCC 6698.121126 7 0.0001 2981 | 5/38
68 h-m-p 0.0000 0.0000 9508.9380 ++ 6684.247259 m 0.0000 3022 | 5/38
69 h-m-p 0.0000 0.0001 1498.2125 +YYCYCC 6672.661900 5 0.0001 3071 | 5/38
70 h-m-p 0.0000 0.0001 1377.1608 +YYYYCC 6663.647310 5 0.0001 3119 | 5/38
71 h-m-p 0.0000 0.0002 797.1715 ++ 6657.249830 m 0.0002 3160 | 6/38
72 h-m-p 0.0000 0.0001 275.1715 +YYCYC 6656.338836 4 0.0001 3207 | 6/38
73 h-m-p 0.0001 0.0006 187.4099 +YCYYCCC 6652.222061 6 0.0004 3258 | 6/38
74 h-m-p 0.0001 0.0004 415.2398 YCYCCC 6648.647670 5 0.0002 3307 | 5/38
75 h-m-p 0.0000 0.0002 1182.8739 CYC 6647.291031 2 0.0000 3351 | 5/38
76 h-m-p 0.0001 0.0007 110.3271 ++ 6645.431401 m 0.0007 3392 | 6/38
77 h-m-p 0.0009 0.0160 82.6087 +YCCC 6633.003776 3 0.0081 3439 | 5/38
78 h-m-p 0.0008 0.0040 166.9037 -YYC 6632.839983 2 0.0001 3483 | 5/38
79 h-m-p 0.0002 0.0043 66.5186 ++YCCC 6630.732090 3 0.0022 3531 | 5/38
80 h-m-p 0.0005 0.0024 168.2599 +YCCC 6628.025425 3 0.0013 3578 | 5/38
81 h-m-p 0.0008 0.0039 36.7591 ++ 6625.667168 m 0.0039 3619 | 6/38
82 h-m-p 0.0012 0.0062 38.0960 CYCCC 6622.886474 4 0.0022 3667 | 6/38
83 h-m-p 0.0030 0.0255 28.1893 YC 6621.708671 1 0.0060 3709 | 6/38
84 h-m-p 0.0166 0.1653 10.1636 +CCC 6616.591801 2 0.0602 3755 | 6/38
85 h-m-p 0.0066 0.0330 27.5074 YCCC 6612.346550 3 0.0153 3801 | 6/38
86 h-m-p 0.0245 0.1223 16.1520 CCC 6607.925230 2 0.0217 3846 | 6/38
87 h-m-p 0.0030 0.0149 21.1823 ++ 6600.491930 m 0.0149 3887 | 7/38
88 h-m-p 0.0132 0.0712 23.8380 +YCY 6585.220385 2 0.0355 3932 | 7/38
89 h-m-p 0.0144 0.0721 19.9012 YCCCC 6577.874267 4 0.0312 3980 | 7/38
90 h-m-p 0.0043 0.0215 20.0523 +YCCC 6575.540164 3 0.0141 4027 | 7/38
91 h-m-p 0.0166 0.1260 17.0736 CCC 6573.638107 2 0.0183 4072 | 7/38
92 h-m-p 0.0424 0.4235 7.3882 YCCC 6572.358338 3 0.0304 4118 | 7/38
93 h-m-p 0.0512 0.4330 4.3805 +YC 6565.459249 1 0.1507 4161 | 6/38
94 h-m-p 0.0194 0.0971 14.1040 YCCC 6565.057160 3 0.0031 4207 | 6/38
95 h-m-p 0.0010 0.0081 45.2153 ++ 6562.240539 m 0.0081 4248 | 6/38
96 h-m-p 0.0407 0.3294 8.9964 +YC 6556.819208 1 0.1029 4291 | 6/38
97 h-m-p 0.0142 0.0709 14.6354 YC 6554.529405 1 0.0319 4333 | 6/38
98 h-m-p 0.2229 1.5288 2.0951 +YYCC 6544.019510 3 0.7810 4379 | 6/38
99 h-m-p 0.0821 0.4106 6.4786 CCCC 6541.608124 3 0.0902 4426 | 5/38
100 h-m-p 0.0034 0.0171 126.3260 --YCC 6541.583953 2 0.0001 4472 | 5/38
101 h-m-p 0.0021 0.9297 4.9697 +++YCC 6538.057017 2 0.2461 4519 | 5/38
102 h-m-p 0.2712 1.3559 2.0889 CCCC 6534.917316 3 0.4204 4566 | 5/38
103 h-m-p 0.3170 1.5969 2.7705 YCCC 6530.312162 3 0.5057 4612 | 5/38
104 h-m-p 0.2720 1.3600 1.9178 +YCCC 6526.481173 3 0.8428 4659 | 5/38
105 h-m-p 0.0767 0.3837 1.5136 ++ 6525.461718 m 0.3837 4700 | 6/38
106 h-m-p 0.4353 2.3641 1.3341 YCCC 6523.843400 3 1.0544 4746 | 6/38
107 h-m-p 0.4181 2.0906 0.9090 CYCCC 6523.200893 4 0.7640 4794 | 5/38
108 h-m-p 0.0002 0.0012 968.2480 CC 6523.130054 1 0.0004 4869 | 5/38
109 h-m-p 0.5836 2.9181 0.4180 YCCC 6522.905657 3 1.1404 4915 | 5/38
110 h-m-p 0.7307 3.6534 0.2001 +CC 6522.760892 1 2.5405 4992 | 5/38
111 h-m-p 1.6000 8.0000 0.0531 CC 6522.712057 1 1.9638 5068 | 5/38
112 h-m-p 1.2035 8.0000 0.0866 YC 6522.653569 1 2.5216 5143 | 5/38
113 h-m-p 1.5958 7.9791 0.0608 C 6522.605243 0 1.5958 5217 | 5/38
114 h-m-p 0.6395 3.1977 0.0712 +C 6522.541832 0 2.4999 5292 | 5/38
115 h-m-p 0.1221 0.6104 0.0527 ++ 6522.525234 m 0.6104 5366 | 6/38
116 h-m-p 0.3451 3.3308 0.0931 CC 6522.521799 1 0.1318 5442 | 6/38
117 h-m-p 0.0367 2.9227 0.3340 +YC 6522.499831 1 0.3448 5517 | 6/38
118 h-m-p 1.1060 5.5298 0.0482 +YC 6522.485367 1 3.5814 5592 | 6/38
119 h-m-p 0.7561 3.7807 0.0309 +C 6522.475997 0 2.8884 5666 | 6/38
120 h-m-p 0.0929 0.4646 0.0178 ++ 6522.474078 m 0.4646 5739 | 7/38
121 h-m-p 0.1026 8.0000 0.0794 +YC 6522.471314 1 0.7684 5814 | 6/38
122 h-m-p 0.0141 1.5442 4.3401 -C 6522.471220 0 0.0009 5887 | 6/38
123 h-m-p 0.0074 0.0372 0.0469 ++ 6522.470842 m 0.0372 5928 | 7/38
124 h-m-p 0.0087 4.3391 0.9095 YC 6522.470518 1 0.0049 6002 | 7/38
125 h-m-p 0.1880 8.0000 0.0237 ++YC 6522.469419 1 2.4140 6077 | 7/38
126 h-m-p 1.6000 8.0000 0.0057 ----------------.. | 7/38
127 h-m-p 0.0000 0.0168 2.6163 Y 6522.469403 0 0.0000 6235 | 7/38
128 h-m-p 0.0000 0.0122 2.0586 C 6522.469353 0 0.0000 6276 | 7/38
129 h-m-p 0.0001 0.0107 0.7913 Y 6522.469344 0 0.0000 6317 | 7/38
130 h-m-p 0.0001 0.0372 0.4717 C 6522.469337 0 0.0001 6389 | 7/38
131 h-m-p 0.0004 0.2105 0.4357 Y 6522.469328 0 0.0002 6461 | 7/38
132 h-m-p 0.0002 0.0792 0.4916 Y 6522.469323 0 0.0001 6533 | 7/38
133 h-m-p 0.0007 0.3359 0.4605 Y 6522.469313 0 0.0003 6605 | 7/38
134 h-m-p 0.0009 0.4596 0.5031 C 6522.469307 0 0.0002 6677 | 7/38
135 h-m-p 0.0014 0.6807 0.3452 Y 6522.469254 0 0.0029 6749 | 7/38
136 h-m-p 0.0017 0.0950 0.5788 -C 6522.469250 0 0.0001 6822 | 7/38
137 h-m-p 0.0019 0.9596 0.2030 Y 6522.469220 0 0.0038 6894 | 7/38
138 h-m-p 0.0051 2.5727 0.4127 C 6522.469199 0 0.0015 6966 | 7/38
139 h-m-p 0.0160 8.0000 0.1230 C 6522.469116 0 0.0253 7038 | 7/38
140 h-m-p 0.0255 8.0000 0.1221 C 6522.469060 0 0.0215 7110 | 7/38
141 h-m-p 0.0168 8.0000 0.1566 Y 6522.468958 0 0.0350 7182 | 7/38
142 h-m-p 0.0339 7.2092 0.1616 Y 6522.468912 0 0.0169 7254 | 7/38
143 h-m-p 0.0423 8.0000 0.0646 Y 6522.468885 0 0.0325 7326 | 7/38
144 h-m-p 0.0265 8.0000 0.0792 +C 6522.468797 0 0.1014 7399 | 7/38
145 h-m-p 0.1789 8.0000 0.0449 C 6522.468783 0 0.0370 7471 | 7/38
146 h-m-p 0.0258 8.0000 0.0643 +C 6522.468711 0 0.1491 7544 | 7/38
147 h-m-p 0.4371 8.0000 0.0219 C 6522.468697 0 0.1180 7616 | 7/38
148 h-m-p 0.1236 8.0000 0.0209 Y 6522.468691 0 0.0686 7688 | 7/38
149 h-m-p 0.2838 8.0000 0.0051 C 6522.468690 0 0.0614 7760 | 7/38
150 h-m-p 0.1499 8.0000 0.0021 Y 6522.468690 0 0.2774 7832 | 7/38
151 h-m-p 0.2597 8.0000 0.0022 C 6522.468689 0 0.2871 7904 | 7/38
152 h-m-p 1.2220 8.0000 0.0005 Y 6522.468689 0 0.6183 7976 | 7/38
153 h-m-p 0.5120 8.0000 0.0006 Y 6522.468689 0 0.8576 8048 | 7/38
154 h-m-p 0.5319 8.0000 0.0010 Y 6522.468689 0 0.3269 8120 | 7/38
155 h-m-p 0.4762 8.0000 0.0007 C 6522.468689 0 0.7497 8192 | 7/38
156 h-m-p 1.6000 8.0000 0.0001 C 6522.468689 0 0.6398 8264 | 7/38
157 h-m-p 1.6000 8.0000 0.0000 C 6522.468689 0 0.4000 8336 | 7/38
158 h-m-p 0.6671 8.0000 0.0000 --C 6522.468689 0 0.0104 8410 | 7/38
159 h-m-p 0.0160 8.0000 0.0000 ---Y 6522.468689 0 0.0001 8485
Out..
lnL = -6522.468689
8486 lfun, 25458 eigenQcodon, 594020 P(t)
end of tree file.
Time used: 5:23
Model 2: PositiveSelection
TREE # 1
(1, 16, ((((((((10, 9), 8), 7), (4, 5)), (14, (18, 19))), ((11, 6), ((12, 13), 15))), (2, 3)), 17)); MP score: 1281
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
22
0.079065 0.077933 0.096847 0.059510 0.022757 0.039403 0.039355 0.036126 0.072705 0.067355 0.073233 0.060235 0.102116 0.093017 0.041982 0.041177 0.108425 0.107677 0.055155 0.035311 0.084228 0.097806 0.087577 0.064292 0.100635 0.097669 0.037045 0.100058 0.038945 0.026597 0.013978 0.071191 0.081612 0.053113 0.011425 1.497671 0.903554 0.292083 0.472455 1.479112
ntime & nrate & np: 35 3 40
Bounds (np=40):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 6.253534
np = 40
lnL0 = -9302.447275
Iterating by ming2
Initial: fx= 9302.447275
x= 0.07907 0.07793 0.09685 0.05951 0.02276 0.03940 0.03936 0.03613 0.07270 0.06736 0.07323 0.06024 0.10212 0.09302 0.04198 0.04118 0.10842 0.10768 0.05516 0.03531 0.08423 0.09781 0.08758 0.06429 0.10064 0.09767 0.03705 0.10006 0.03895 0.02660 0.01398 0.07119 0.08161 0.05311 0.01142 1.49767 0.90355 0.29208 0.47245 1.47911
1 h-m-p 0.0000 0.0001 7710.3907 ++ 7645.329692 m 0.0001 45 | 1/40
2 h-m-p 0.0000 0.0001 1255.3175 ++ 7584.571597 m 0.0001 88 | 2/40
3 h-m-p 0.0000 0.0000 2937.9263 ++ 7526.940904 m 0.0000 131 | 3/40
4 h-m-p 0.0000 0.0000 1549.0092 ++ 7486.080019 m 0.0000 174 | 4/40
5 h-m-p 0.0000 0.0000 1666.4155 ++ 7478.429688 m 0.0000 217 | 5/40
6 h-m-p 0.0000 0.0000 5638.3660 ++ 7442.326528 m 0.0000 260 | 4/40
7 h-m-p 0.0000 0.0000 4330.0561
h-m-p: 8.56553742e-22 4.28276871e-21 4.33005608e+03 7442.326528
.. | 4/40
8 h-m-p 0.0000 0.0001 230615.2046 --YCYYYYCCCC 7436.447782 9 0.0000 359 | 4/40
9 h-m-p 0.0000 0.0000 977.7930 ++ 7435.996386 m 0.0000 402 | 5/40
10 h-m-p 0.0000 0.0003 1213.6051 +++ 7291.190355 m 0.0003 446 | 5/40
11 h-m-p 0.0001 0.0007 581.1726 ++ 7233.925399 m 0.0007 489 | 5/40
12 h-m-p 0.0000 0.0000 25928.8491 +YCYCCC 7223.369946 5 0.0000 541 | 5/40
13 h-m-p 0.0000 0.0000 6793.5706 ++ 7207.773808 m 0.0000 584 | 5/40
14 h-m-p 0.0001 0.0005 1007.7319 ++ 7160.213923 m 0.0005 627 | 6/40
15 h-m-p 0.0001 0.0007 169.9713 ++ 7145.950755 m 0.0007 670 | 7/40
16 h-m-p 0.0006 0.0030 196.0108 ++ 7103.861398 m 0.0030 713 | 7/40
17 h-m-p 0.0001 0.0003 1329.9137 ++ 7069.378825 m 0.0003 756 | 7/40
18 h-m-p 0.0000 0.0001 5945.1747 ++ 7010.136605 m 0.0001 799 | 7/40
19 h-m-p 0.0000 0.0000 307.1429
h-m-p: 5.41397744e-20 2.70698872e-19 3.07142857e+02 7010.136605
.. | 7/40
20 h-m-p 0.0000 0.0001 800.7013 ++ 6977.336200 m 0.0001 882 | 6/40
21 h-m-p 0.0000 0.0000 47186.5388
h-m-p: 3.70654894e-24 1.85327447e-23 4.71865388e+04 6977.336200
.. | 6/40
22 h-m-p 0.0000 0.0001 233569.7975 --YCYYYYC 6971.385173 6 0.0000 975 | 6/40
23 h-m-p 0.0000 0.0000 645.6560 ++ 6971.264787 m 0.0000 1018 | 7/40
24 h-m-p 0.0000 0.0003 1037.3548 +++ 6858.167301 m 0.0003 1062 | 7/40
25 h-m-p 0.0000 0.0000 1631.9953
h-m-p: 2.07869873e-20 1.03934937e-19 1.63199527e+03 6858.167301
.. | 7/40
26 h-m-p 0.0000 0.0001 881.2600 +CYCC 6849.462920 3 0.0001 1152 | 7/40
27 h-m-p 0.0000 0.0002 598.9484 +CYYYYC 6828.721866 5 0.0002 1202 | 7/40
28 h-m-p 0.0000 0.0001 2061.2717 ++ 6801.742034 m 0.0001 1245 | 7/40
29 h-m-p -0.0000 -0.0000 726.8441
h-m-p: -2.01649159e-18 -1.00824580e-17 7.26844101e+02 6801.742034
.. | 7/40
30 h-m-p 0.0000 0.0002 600.2648 ++YYCCC 6786.420140 4 0.0001 1336 | 7/40
31 h-m-p 0.0000 0.0001 464.8457 +YYCYYCCC 6775.547031 7 0.0001 1390 | 6/40
32 h-m-p 0.0000 0.0000 2256.6269 +YYCYC 6774.500929 4 0.0000 1439 | 6/40
33 h-m-p 0.0000 0.0001 680.9563 +YYCCC 6771.008011 4 0.0000 1489 | 6/40
34 h-m-p 0.0000 0.0000 1334.6584 +YCCC 6769.965573 3 0.0000 1538 | 6/40
35 h-m-p 0.0000 0.0000 788.9748 ++ 6764.740174 m 0.0000 1581 | 6/40
36 h-m-p 0.0000 0.0001 12154.2161 +YCYCCC 6686.723540 5 0.0001 1633 | 6/40
37 h-m-p 0.0000 0.0002 1310.3810 +YCYCCC 6664.245927 5 0.0002 1685 | 6/40
38 h-m-p 0.0000 0.0000 6177.1264 +CCCC 6656.212090 3 0.0000 1735 | 6/40
39 h-m-p 0.0001 0.0003 236.5929 YCCC 6654.620958 3 0.0001 1783 | 6/40
40 h-m-p 0.0001 0.0004 120.4575 ++ 6650.887173 m 0.0004 1826 | 6/40
41 h-m-p 0.0001 0.0026 495.3263 +YCCC 6638.842158 3 0.0008 1875 | 6/40
42 h-m-p 0.0035 0.0193 106.3831 CCCC 6625.097965 3 0.0055 1924 | 6/40
43 h-m-p 0.0029 0.0146 46.7338 +YCCC 6619.719240 3 0.0078 1973 | 6/40
44 h-m-p 0.0013 0.0064 27.9389 ++ 6616.654664 m 0.0064 2016 | 7/40
45 h-m-p 0.0008 0.0042 68.2559 YCYCCC 6611.627025 5 0.0019 2067 | 7/40
46 h-m-p 0.0052 0.0912 24.7968 YCC 6609.537063 2 0.0109 2113 | 7/40
47 h-m-p 0.0224 0.1458 12.0600 CCC 6608.162880 2 0.0193 2160 | 7/40
48 h-m-p 0.0294 0.1471 6.6065 YC 6604.965405 1 0.0638 2204 | 6/40
49 h-m-p 0.0098 0.0492 12.1002 YCCC 6602.477584 3 0.0185 2252 | 6/40
50 h-m-p 0.0004 0.0021 125.5189 ++ 6599.001938 m 0.0021 2295 | 6/40
51 h-m-p 0.0000 0.0000 34.5241
h-m-p: 2.62248456e-18 1.31124228e-17 3.45240833e+01 6599.001938
.. | 6/40
52 h-m-p 0.0000 0.0000 247.7350 ++ 6598.247350 m 0.0000 2378 | 7/40
53 h-m-p 0.0000 0.0001 383.8502 +CYYCC 6595.433970 4 0.0001 2429 | 7/40
54 h-m-p 0.0000 0.0000 341.7115 +YCYC 6594.716310 3 0.0000 2477 | 7/40
55 h-m-p 0.0001 0.0018 76.3052 +YCCC 6592.944955 3 0.0009 2526 | 7/40
56 h-m-p 0.0001 0.0003 559.1049 +YCYCC 6589.648564 4 0.0002 2576 | 7/40
57 h-m-p 0.0001 0.0003 1212.4093 YCCC 6584.796308 3 0.0001 2624 | 7/40
58 h-m-p 0.0001 0.0004 177.2989 YCCCC 6584.039003 4 0.0002 2674 | 7/40
59 h-m-p 0.0003 0.0062 121.4232 ++YCCC 6578.458846 3 0.0026 2724 | 7/40
60 h-m-p 0.0000 0.0002 418.5670 +YCYC 6577.425517 3 0.0001 2772 | 7/40
61 h-m-p 0.0002 0.0008 142.7387 ++ 6574.796040 m 0.0008 2815 | 7/40
62 h-m-p 0.0009 0.0140 123.7612 +CYC 6568.251203 2 0.0042 2862 | 7/40
63 h-m-p 0.0004 0.0019 417.0618 +YCCC 6560.943498 3 0.0011 2911 | 7/40
64 h-m-p 0.0023 0.0113 43.9375 +CCC 6556.473354 2 0.0091 2959 | 7/40
65 h-m-p 0.0072 0.0359 45.5218 YCCC 6552.006056 3 0.0122 3007 | 7/40
66 h-m-p 0.0072 0.0358 16.0809 YCC 6550.967766 2 0.0121 3053 | 7/40
67 h-m-p 0.0044 0.0220 15.1824 ++ 6548.786386 m 0.0220 3096 | 8/40
68 h-m-p 0.0057 0.0285 28.8169 YYYY 6547.923774 3 0.0057 3142 | 7/40
69 h-m-p 0.0006 0.0052 259.6697 YC 6546.632914 1 0.0013 3186 | 7/40
70 h-m-p 0.0067 0.0337 24.0627 ++ 6543.618853 m 0.0337 3229 | 7/40
71 h-m-p 0.0000 0.0000 8.8800
h-m-p: 9.53678983e-19 4.76839492e-18 8.88001435e+00 6543.618853
.. | 7/40
72 h-m-p 0.0000 0.0001 512.9734 CYC 6542.126512 2 0.0000 3315 | 7/40
73 h-m-p 0.0000 0.0001 107.2332 YCYCC 6541.872652 4 0.0000 3364 | 7/40
74 h-m-p 0.0001 0.0004 79.2762 CC 6541.773047 1 0.0000 3409 | 7/40
75 h-m-p 0.0002 0.0008 22.9137 YY 6541.737503 1 0.0002 3453 | 7/40
76 h-m-p 0.0000 0.0015 77.4278 +CCC 6541.526686 2 0.0003 3501 | 6/40
77 h-m-p 0.0000 0.0006 472.9025 +YC 6541.018131 1 0.0001 3546 | 6/40
78 h-m-p 0.0003 0.0014 203.5964 YCCC 6540.821044 3 0.0001 3594 | 6/40
79 h-m-p 0.0002 0.0009 106.0230 +CC 6540.332756 1 0.0006 3640 | 6/40
80 h-m-p 0.0000 0.0001 283.4381 ++ 6540.142472 m 0.0001 3683 | 6/40
81 h-m-p 0.0000 0.0000 37.6502
h-m-p: 1.57910138e-20 7.89550691e-20 3.76502115e+01 6540.142472
.. | 6/40
82 h-m-p 0.0000 0.0005 28.2163 +C 6540.127401 0 0.0000 3767 | 6/40
83 h-m-p 0.0000 0.0005 56.8343 +YYC 6540.085122 2 0.0001 3813 | 6/40
84 h-m-p 0.0000 0.0000 118.5086 ++ 6540.052026 m 0.0000 3856 | 7/40
85 h-m-p 0.0000 0.0004 244.3749 +YC 6539.876181 1 0.0001 3901 | 7/40
86 h-m-p 0.0002 0.0012 67.5133 CCCC 6539.728784 3 0.0002 3950 | 7/40
87 h-m-p 0.0002 0.0009 96.1142 CC 6539.546386 1 0.0003 3995 | 7/40
88 h-m-p 0.0001 0.0003 95.9032 CCCC 6539.498365 3 0.0001 4044 | 7/40
89 h-m-p 0.0003 0.0572 18.4969 ++YCCC 6538.401411 3 0.0121 4094 | 6/40
90 h-m-p 0.0001 0.0006 952.5486 YCCC 6538.159929 3 0.0001 4142 | 6/40
91 h-m-p 0.0001 0.0005 193.9250 YYY 6538.070481 2 0.0001 4187 | 6/40
92 h-m-p 0.0002 0.0012 63.0877 ++ 6537.445035 m 0.0012 4230 | 7/40
93 h-m-p 0.0004 0.0024 194.2438 YCCC 6536.816397 3 0.0007 4278 | 6/40
94 h-m-p 0.0001 0.0007 1110.0167 YCCC 6536.469225 3 0.0001 4326 | 6/40
95 h-m-p 0.0004 0.0020 43.3703 ++ 6535.951859 m 0.0020 4369 | 7/40
96 h-m-p 0.0017 0.0084 42.3200 CYCCC 6535.538808 4 0.0025 4419 | 6/40
97 h-m-p 0.0000 0.0002 1122.2040 +CC 6534.881111 1 0.0002 4465 | 6/40
98 h-m-p 0.0029 0.0145 18.4233 ++ 6534.015380 m 0.0145 4508 | 6/40
99 h-m-p 0.0000 0.0000 19.2747
h-m-p: 4.85130414e-20 2.42565207e-19 1.92746710e+01 6534.015380
.. | 6/40
100 h-m-p 0.0000 0.0005 160.1120 CCC 6533.894217 2 0.0000 4595 | 6/40
101 h-m-p 0.0000 0.0005 53.1862 YC 6533.816266 1 0.0001 4639 | 6/40
102 h-m-p 0.0000 0.0004 86.0963 YC 6533.653459 1 0.0001 4683 | 6/40
103 h-m-p 0.0001 0.0006 148.6832 YCC 6533.400976 2 0.0001 4729 | 6/40
104 h-m-p 0.0002 0.0008 101.7232 YCC 6533.248480 2 0.0001 4775 | 6/40
105 h-m-p 0.0001 0.0006 31.6113 +YCCC 6533.136928 3 0.0004 4824 | 6/40
106 h-m-p 0.0000 0.0000 262.7616 ++ 6533.010423 m 0.0000 4867 | 6/40
107 h-m-p 0.0000 0.0000 100.5455
h-m-p: 3.05333921e-21 1.52666961e-20 1.00545457e+02 6533.010423
.. | 6/40
108 h-m-p 0.0000 0.0009 43.6519 +CYC 6532.970850 2 0.0000 4954 | 6/40
109 h-m-p 0.0001 0.0014 28.6568 C 6532.948864 0 0.0001 4997 | 6/40
110 h-m-p 0.0000 0.0003 134.1588 YC 6532.914369 1 0.0000 5041 | 6/40
111 h-m-p 0.0000 0.0003 71.5016 CCC 6532.866242 2 0.0001 5088 | 6/40
112 h-m-p 0.0000 0.0011 128.3719 YCC 6532.788220 2 0.0001 5134 | 6/40
113 h-m-p 0.0001 0.0006 33.1570 YC 6532.750197 1 0.0002 5178 | 6/40
114 h-m-p 0.0000 0.0001 59.9003 ++ 6532.681928 m 0.0001 5221 | 7/40
115 h-m-p 0.0000 0.0020 176.8497 +YCC 6532.314380 2 0.0004 5268 | 7/40
116 h-m-p 0.0013 0.0063 15.9619 YCC 6532.257908 2 0.0009 5314 | 7/40
117 h-m-p 0.0009 0.0047 10.8010 YCC 6532.241323 2 0.0005 5360 | 7/40
118 h-m-p 0.0000 0.0006 128.8209 ++ 6532.001022 m 0.0006 5403 | 8/40
119 h-m-p 0.0009 0.0045 20.8625 YCC 6531.961506 2 0.0006 5449 | 7/40
120 h-m-p 0.0001 0.0009 157.1030 ++ 6531.533223 m 0.0009 5492 | 7/40
121 h-m-p 0.0000 0.0000 28.8992
h-m-p: 3.97888361e-20 1.98944180e-19 2.88991545e+01 6531.533223
.. | 7/40
122 h-m-p 0.0000 0.0011 21.1275 +C 6531.524913 0 0.0000 5576 | 7/40
123 h-m-p 0.0000 0.0006 46.3869 C 6531.517763 0 0.0000 5619 | 7/40
124 h-m-p 0.0001 0.0005 16.3525 CC 6531.512512 1 0.0001 5664 | 7/40
125 h-m-p 0.0000 0.0002 26.9711 +CC 6531.497454 1 0.0001 5710 | 7/40
126 h-m-p 0.0001 0.0088 61.3932 +CC 6531.425505 1 0.0003 5756 | 7/40
127 h-m-p 0.0003 0.0016 73.3544 YCC 6531.384250 2 0.0001 5802 | 7/40
128 h-m-p 0.0003 0.0020 38.3734 CCC 6531.344089 2 0.0003 5849 | 7/40
129 h-m-p 0.0001 0.0011 184.9186 +YC 6531.220618 1 0.0002 5894 | 7/40
130 h-m-p 0.0003 0.0013 11.4082 CC 6531.218202 1 0.0001 5939 | 7/40
131 h-m-p 0.0001 0.0076 15.8309 ++++ 6530.924405 m 0.0076 5984 | 6/40
132 h-m-p 0.0000 0.0000 100.5952
h-m-p: 1.03634659e-20 5.18173296e-20 1.00595235e+02 6530.924405
.. | 6/40
133 h-m-p 0.0000 0.0073 17.5659 ++YC 6530.898605 1 0.0002 6070 | 6/40
134 h-m-p 0.0000 0.0014 229.3628 YC 6530.854511 1 0.0000 6114 | 6/40
135 h-m-p 0.0000 0.0001 21.7486 +C 6530.849002 0 0.0000 6158 | 6/40
136 h-m-p 0.0000 0.0000 18.0482 ++ 6530.846944 m 0.0000 6201 | 6/40
137 h-m-p 0.0000 0.0004 31.9920 +++ 6530.814722 m 0.0004 6245 | 6/40
138 h-m-p 0.0000 0.0000 24.0688
h-m-p: 4.91989638e-21 2.45994819e-20 2.40687640e+01 6530.814722
.. | 6/40
139 h-m-p 0.0000 0.0001 25.6053 +CC 6530.802605 1 0.0000 6331 | 6/40
140 h-m-p 0.0000 0.0000 17.4122 ++ 6530.798534 m 0.0000 6374 | 6/40
141 h-m-p 0.0000 0.0000 35.6307
h-m-p: 1.27810155e-22 6.39050776e-22 3.56306892e+01 6530.798534
.. | 6/40
142 h-m-p 0.0000 0.0235 15.8850 C 6530.796864 0 0.0000 6457 | 6/40
143 h-m-p 0.0000 0.0148 15.7664 +C 6530.788308 0 0.0001 6501 | 6/40
144 h-m-p 0.0000 0.0008 40.3487 YC 6530.773119 1 0.0001 6545 | 6/40
145 h-m-p 0.0000 0.0001 44.8310 +CC 6530.765301 1 0.0000 6591 | 6/40
146 h-m-p 0.0000 0.0001 9.6143 ++ 6530.761011 m 0.0001 6634 | 6/40
147 h-m-p 0.0000 0.0001 69.1765 ++ 6530.743185 m 0.0001 6677 | 7/40
148 h-m-p 0.0001 0.0007 34.0652 YC 6530.723757 1 0.0003 6721 | 7/40
149 h-m-p 0.0001 0.0048 97.0131 +CC 6530.607434 1 0.0006 6767 | 7/40
150 h-m-p 0.0006 0.0029 46.0366 CY 6530.589801 1 0.0002 6812 | 7/40
151 h-m-p 0.0002 0.0030 39.7195 +YCC 6530.531590 2 0.0006 6859 | 7/40
152 h-m-p 0.0000 0.0001 354.8956 ++ 6530.426463 m 0.0001 6902 | 7/40
153 h-m-p 0.0023 0.1258 17.4106 +YCCC 6529.976808 3 0.0149 6951 | 7/40
154 h-m-p 0.0039 0.0699 66.8131 +YCCCC 6525.963503 4 0.0318 7002 | 7/40
155 h-m-p 0.0058 0.0291 11.5866 +YC 6525.664808 1 0.0171 7047 | 7/40
156 h-m-p 0.0016 0.0078 6.2272 ++ 6525.559982 m 0.0078 7090 | 8/40
157 h-m-p 0.0018 0.0092 4.9744 C 6525.554467 0 0.0005 7133 | 7/40
158 h-m-p 0.0001 0.0042 29.7606 +++ 6525.358238 m 0.0042 7177 | 7/40
159 h-m-p 0.0000 0.0000 8.4896
h-m-p: 2.76120446e-19 1.38060223e-18 8.48957705e+00 6525.358238
.. | 7/40
160 h-m-p 0.0000 0.0017 568.1452 YCCC 6524.624180 3 0.0000 7265 | 7/40
161 h-m-p 0.0004 0.0122 7.2186 C 6524.622150 0 0.0001 7308 | 7/40
162 h-m-p 0.0001 0.0079 8.1755 +CC 6524.615868 1 0.0003 7354 | 7/40
163 h-m-p 0.0001 0.0008 44.4160 CC 6524.608183 1 0.0001 7399 | 7/40
164 h-m-p 0.0001 0.0018 58.1542 CC 6524.598729 1 0.0001 7444 | 7/40
165 h-m-p 0.0002 0.0021 19.1124 YC 6524.595258 1 0.0001 7488 | 7/40
166 h-m-p 0.0001 0.0044 18.5421 +YC 6524.573495 1 0.0007 7533 | 7/40
167 h-m-p 0.0002 0.0015 55.4416 YC 6524.559457 1 0.0001 7577 | 7/40
168 h-m-p 0.0004 0.0019 21.8740 YC 6524.557374 1 0.0001 7621 | 7/40
169 h-m-p 0.0003 0.0100 4.4046 +++ 6524.522020 m 0.0100 7665 | 8/40
170 h-m-p 0.0077 0.1388 5.4469 -YC 6524.520510 1 0.0003 7710 | 8/40
171 h-m-p 0.0002 0.1102 8.6740 ++CC 6524.497748 1 0.0032 7757 | 7/40
172 h-m-p 0.0007 0.0705 39.7424 YC 6524.449180 1 0.0017 7801 | 7/40
173 h-m-p 0.0005 0.0026 13.5903 ++ 6524.400544 m 0.0026 7844 | 8/40
174 h-m-p 0.0032 0.2016 10.8633 +YC 6524.182271 1 0.0277 7889 | 7/40
175 h-m-p 0.0069 0.0867 43.4864 YC 6524.157392 1 0.0009 7933 | 7/40
176 h-m-p 0.0040 0.1043 10.2215 ++YC 6523.828884 1 0.0495 7979 | 6/40
177 h-m-p 0.0041 0.0206 15.6320 -YC 6523.824615 1 0.0002 8024 | 6/40
178 h-m-p 0.0001 0.0087 39.3092 ++++ 6523.508364 m 0.0087 8069 | 7/40
179 h-m-p 0.0083 0.0416 14.8137 +YC 6523.198614 1 0.0366 8114 | 7/40
180 h-m-p 0.0036 0.0179 16.8723 +C 6523.060360 0 0.0141 8158 | 7/40
181 h-m-p 0.1000 4.9372 2.3761 YC 6522.861405 1 0.1979 8202 | 7/40
182 h-m-p 0.1026 0.9251 4.5851 CC 6522.803336 1 0.0331 8247 | 6/40
183 h-m-p 0.0197 0.2434 7.7091 -C 6522.798916 0 0.0014 8291 | 6/40
184 h-m-p 0.0013 0.0753 8.4495 ++YC 6522.691281 1 0.0377 8337 | 6/40
185 h-m-p 0.0090 0.0448 2.5196 ++ 6522.638237 m 0.0448 8380 | 7/40
186 h-m-p 0.0122 0.0611 1.2815 ++ 6522.611255 m 0.0611 8423 | 8/40
187 h-m-p 0.0657 3.3081 1.1922 +YC 6522.558713 1 0.1739 8468 | 8/40
188 h-m-p 0.1801 5.9913 1.1511 CC 6522.500595 1 0.2082 8513 | 8/40
189 h-m-p 0.4903 8.0000 0.4888 YC 6522.487468 1 0.2452 8557 | 8/40
190 h-m-p 0.2858 8.0000 0.4193 YC 6522.474641 1 0.4982 8633 | 8/40
191 h-m-p 0.7899 8.0000 0.2645 YC 6522.470142 1 0.4155 8709 | 8/40
192 h-m-p 1.6000 8.0000 0.0511 YC 6522.469786 1 0.2099 8785 | 8/40
193 h-m-p 0.4615 8.0000 0.0232 C 6522.468950 0 0.6150 8860 | 8/40
194 h-m-p 1.0489 8.0000 0.0136 C 6522.468872 0 0.3857 8935 | 8/40
195 h-m-p 0.4885 8.0000 0.0108 C 6522.468732 0 0.6757 9010 | 8/40
196 h-m-p 0.8188 8.0000 0.0089 Y 6522.468703 0 0.4980 9085 | 8/40
197 h-m-p 0.5713 8.0000 0.0077 C 6522.468690 0 0.6660 9160 | 8/40
198 h-m-p 1.6000 8.0000 0.0011 Y 6522.468689 0 0.9692 9235 | 8/40
199 h-m-p 1.6000 8.0000 0.0000 Y 6522.468689 0 0.9039 9310 | 8/40
200 h-m-p 1.6000 8.0000 0.0000 Y 6522.468689 0 1.2276 9385 | 8/40
201 h-m-p 1.6000 8.0000 0.0000 ----C 6522.468689 0 0.0016 9464
Out..
lnL = -6522.468689
9465 lfun, 37860 eigenQcodon, 993825 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -6553.484001 S = -6455.370901 -98.109323
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 214 patterns 14:25
did 20 / 214 patterns 14:25
did 30 / 214 patterns 14:25
did 40 / 214 patterns 14:25
did 50 / 214 patterns 14:25
did 60 / 214 patterns 14:25
did 70 / 214 patterns 14:25
did 80 / 214 patterns 14:25
did 90 / 214 patterns 14:25
did 100 / 214 patterns 14:25
did 110 / 214 patterns 14:25
did 120 / 214 patterns 14:25
did 130 / 214 patterns 14:25
did 140 / 214 patterns 14:25
did 150 / 214 patterns 14:25
did 160 / 214 patterns 14:25
did 170 / 214 patterns 14:25
did 180 / 214 patterns 14:25
did 190 / 214 patterns 14:25
did 200 / 214 patterns 14:25
did 210 / 214 patterns 14:26
did 214 / 214 patterns 14:26end of tree file.
Time used: 14:26
Model 7: beta
TREE # 1
(1, 16, ((((((((10, 9), 8), 7), (4, 5)), (14, (18, 19))), ((11, 6), ((12, 13), 15))), (2, 3)), 17)); MP score: 1281
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
22
0.017506 0.038799 0.104262 0.098397 0.108533 0.016271 0.033816 0.036248 0.054055 0.045866 0.012050 0.018889 0.088026 0.070545 0.058480 0.056345 0.100862 0.087511 0.103056 0.011645 0.026767 0.060361 0.019538 0.089687 0.089934 0.078016 0.023213 0.093966 0.039339 0.046363 0.050164 0.074618 0.076781 0.073552 0.010267 1.497671 0.762039 1.478749
ntime & nrate & np: 35 1 38
Bounds (np=38):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 10.630300
np = 38
lnL0 = -9090.983401
Iterating by ming2
Initial: fx= 9090.983401
x= 0.01751 0.03880 0.10426 0.09840 0.10853 0.01627 0.03382 0.03625 0.05406 0.04587 0.01205 0.01889 0.08803 0.07054 0.05848 0.05634 0.10086 0.08751 0.10306 0.01164 0.02677 0.06036 0.01954 0.08969 0.08993 0.07802 0.02321 0.09397 0.03934 0.04636 0.05016 0.07462 0.07678 0.07355 0.01027 1.49767 0.76204 1.47875
1 h-m-p 0.0000 0.0000 8280.7456 ++ 7887.047411 m 0.0000 43 | 1/38
2 h-m-p 0.0000 0.0001 1543.0631 ++ 7770.814648 m 0.0001 84 | 0/38
3 h-m-p 0.0000 0.0000 147735.4989 ++ 7699.425634 m 0.0000 125 | 2/38
4 h-m-p 0.0000 0.0000 92553.3882 ++ 7663.387598 m 0.0000 166 | 3/38
5 h-m-p 0.0000 0.0000 3654.8645 ++ 7587.642641 m 0.0000 207 | 2/38
6 h-m-p 0.0000 0.0000 159669.3047
h-m-p: 7.67719066e-24 3.83859533e-23 1.59669305e+05 7587.642641
.. | 2/38
7 h-m-p 0.0000 0.0000 231043.0602 -CCYYCYYCC 7581.837176 8 0.0000 299 | 2/38
8 h-m-p 0.0000 0.0000 1660.4726 ++ 7580.914033 m 0.0000 340 | 3/38
9 h-m-p 0.0000 0.0000 2087.3036 ++ 7575.141004 m 0.0000 381 | 3/38
10 h-m-p 0.0000 0.0000 1110.1669 ++ 7574.078518 m 0.0000 422 | 4/38
11 h-m-p 0.0000 0.0000 1980.9256 ++ 7570.789812 m 0.0000 463 | 5/38
12 h-m-p 0.0000 0.0001 832.9701 +CYYCYCCC 7559.348608 7 0.0001 516 | 5/38
13 h-m-p 0.0000 0.0000 1965.3822 ++ 7544.106835 m 0.0000 557 | 5/38
14 h-m-p 0.0000 0.0000 1494.1308 +YYYCCC 7540.659111 5 0.0000 606 | 5/38
15 h-m-p 0.0000 0.0000 2607.2985 +CYCYCCC 7521.913672 6 0.0000 658 | 5/38
16 h-m-p 0.0000 0.0001 6379.3702 +YYCCCC 7481.829197 5 0.0000 708 | 5/38
17 h-m-p 0.0001 0.0004 722.8450 CCCCCC 7471.966308 5 0.0001 759 | 5/38
18 h-m-p 0.0002 0.0010 64.0367 CCC 7471.347840 2 0.0003 804 | 5/38
19 h-m-p 0.0003 0.0097 61.5905 +CCCC 7468.579660 3 0.0015 852 | 5/38
20 h-m-p 0.0003 0.0017 250.9003 CCC 7464.475441 2 0.0006 897 | 5/38
21 h-m-p 0.0002 0.0010 203.9232 YCCCC 7461.997982 4 0.0004 945 | 5/38
22 h-m-p 0.0006 0.0037 134.3081 CCC 7459.660495 2 0.0005 990 | 5/38
23 h-m-p 0.0022 0.0126 33.1525 CCC 7456.254079 2 0.0019 1035 | 5/38
24 h-m-p 0.0006 0.0028 56.6968 YCYCCC 7445.564143 5 0.0015 1084 | 5/38
25 h-m-p 0.0002 0.0009 234.6396 +YCCCC 7405.789060 4 0.0009 1134 | 5/38
26 h-m-p 0.0001 0.0003 299.7519 ++ 7380.494280 m 0.0003 1175 | 4/38
27 h-m-p -0.0000 -0.0000 150841.5491
h-m-p: -1.13936183e-23 -5.69680917e-23 1.50841549e+05 7380.494280
.. | 4/38
28 h-m-p 0.0000 0.0000 228605.1070 ---YYCCYC 7374.928578 5 0.0000 1265 | 4/38
29 h-m-p 0.0000 0.0000 1602.2151 ++ 7374.056050 m 0.0000 1306 | 5/38
30 h-m-p 0.0000 0.0000 6938.3197 ++ 7295.823747 m 0.0000 1347 | 5/38
31 h-m-p 0.0000 0.0000 11785.3085 ++ 7288.444713 m 0.0000 1388 | 5/38
32 h-m-p -0.0000 -0.0000 2051.6532
h-m-p: -2.72977251e-23 -1.36488626e-22 2.05165322e+03 7288.444713
.. | 5/38
33 h-m-p 0.0000 0.0001 5962.5902 CYCYYCC 7282.053845 6 0.0000 1477 | 5/38
34 h-m-p 0.0000 0.0001 1142.1672 ++ 7188.712888 m 0.0001 1518 | 4/38
35 h-m-p 0.0000 0.0000 1065181.2443 ++ 7141.589556 m 0.0000 1559 | 4/38
36 h-m-p 0.0000 0.0000 16869.3952 ++ 7137.722030 m 0.0000 1600 | 5/38
37 h-m-p 0.0000 0.0000 2232.9267 +YCCC 7091.550873 3 0.0000 1648 | 5/38
38 h-m-p 0.0000 0.0000 3189.8459 +YYCCC 7088.933191 4 0.0000 1696 | 5/38
39 h-m-p 0.0000 0.0001 1851.2293 ++ 7077.020301 m 0.0001 1737 | 5/38
40 h-m-p 0.0000 0.0002 250.9217 +CYCYCCC 7067.541371 6 0.0002 1789 | 4/38
41 h-m-p 0.0000 0.0000 701.6615 ++ 7063.461888 m 0.0000 1830 | 4/38
42 h-m-p 0.0000 0.0001 530.1211 ++ 7054.251350 m 0.0001 1871 | 5/38
43 h-m-p 0.0001 0.0003 387.7228 ++ 7046.678227 m 0.0003 1912 | 5/38
44 h-m-p -0.0000 -0.0000 255.8952
h-m-p: -3.72210709e-20 -1.86105354e-19 2.55895233e+02 7046.678227
.. | 5/38
45 h-m-p 0.0000 0.0000 4640.5603 YYYYYYC 7039.237544 6 0.0000 1997 | 5/38
46 h-m-p 0.0000 0.0000 723.3183 ++ 7030.801193 m 0.0000 2038 | 6/38
47 h-m-p 0.0000 0.0000 6076.1894 +YCYYYCCCC 7022.889796 8 0.0000 2092 | 6/38
48 h-m-p 0.0000 0.0002 811.2080 +YCYCCC 6993.766692 5 0.0001 2142 | 6/38
49 h-m-p 0.0000 0.0001 1574.7129 +YYCYYYYYYY 6959.921422 9 0.0001 2194 | 5/38
50 h-m-p 0.0000 0.0000 6843.9605 +YYCCC 6957.849535 4 0.0000 2242 | 5/38
51 h-m-p 0.0000 0.0005 953.0990 +++ 6922.352979 m 0.0005 2284 | 4/38
52 h-m-p -0.0000 -0.0000 96506.0656
h-m-p: -4.55999831e-23 -2.27999916e-22 9.65060656e+04 6922.352979
.. | 4/38
53 h-m-p 0.0000 0.0001 230030.4097 ---YYCCYC 6916.566155 5 0.0000 2375 | 4/38
54 h-m-p 0.0000 0.0000 685.9828 ++ 6916.358239 m 0.0000 2416 | 5/38
55 h-m-p 0.0000 0.0001 945.0122 ++ 6874.169085 m 0.0001 2457 | 5/38
56 h-m-p 0.0000 0.0000 1590.5612 ++ 6864.022909 m 0.0000 2498 | 5/38
57 h-m-p 0.0000 0.0000 1669.3784 +YCYYC 6853.711463 4 0.0000 2545 | 5/38
58 h-m-p 0.0000 0.0000 1051.2862 ++ 6843.813369 m 0.0000 2586 | 5/38
59 h-m-p 0.0000 0.0000 3449.0602 +YCYYCCC 6805.969610 6 0.0000 2638 | 5/38
60 h-m-p 0.0005 0.0026 196.5676 +CYYCCC 6771.028625 5 0.0023 2688 | 5/38
61 h-m-p 0.0006 0.1251 772.1716 YYYCC 6754.027990 4 0.0006 2734 | 5/38
62 h-m-p 0.0002 0.0009 114.4537 +YCCC 6751.892898 3 0.0005 2781 | 5/38
63 h-m-p 0.0006 0.0106 88.0028 +CCCC 6745.307310 3 0.0029 2829 | 5/38
64 h-m-p 0.0004 0.0022 262.8801 CCCCC 6740.815967 4 0.0007 2878 | 5/38
65 h-m-p 0.0023 0.0116 73.8274 +YCCC 6731.164654 3 0.0067 2925 | 5/38
66 h-m-p 0.0009 0.0044 97.4168 +YYYCC 6725.581560 4 0.0034 2972 | 5/38
67 h-m-p 0.0015 0.0076 130.1732 +CCC 6716.191517 2 0.0058 3018 | 5/38
68 h-m-p 0.0033 0.0167 57.6185 +YYYCC 6706.450753 4 0.0128 3065 | 5/38
69 h-m-p 0.0017 0.0085 82.5996 ++ 6695.709763 m 0.0085 3106 | 5/38
70 h-m-p -0.0000 -0.0000 112.6943
h-m-p: -4.36739268e-19 -2.18369634e-18 1.12694337e+02 6695.709763
.. | 5/38
71 h-m-p 0.0000 0.0001 504.9259 ++ 6673.930586 m 0.0001 3185 | 5/38
72 h-m-p -0.0000 -0.0000 4982.3553
h-m-p: -3.43536873e-22 -1.71768436e-21 4.98235527e+03 6673.930586
.. | 5/38
73 h-m-p 0.0000 0.0001 16476.3778 CCYYYYYY 6666.797296 7 0.0000 3273 | 5/38
74 h-m-p 0.0000 0.0001 551.1855 +YYYCCC 6662.979012 5 0.0001 3322 | 5/38
75 h-m-p 0.0000 0.0002 447.5424 +CYCCC 6652.553268 4 0.0001 3371 | 5/38
76 h-m-p 0.0000 0.0001 560.8243 +YCYCCC 6650.319166 5 0.0000 3421 | 5/38
77 h-m-p 0.0000 0.0000 610.9101 ++ 6645.351258 m 0.0000 3462 | 5/38
78 h-m-p -0.0000 -0.0000 1583.9395
h-m-p: -1.21220580e-21 -6.06102902e-21 1.58393947e+03 6645.351258
.. | 5/38
79 h-m-p 0.0000 0.0002 424.1966 +YYCCC 6642.249694 4 0.0001 3548 | 5/38
80 h-m-p 0.0000 0.0001 249.9296 +YYCCCC 6639.513081 5 0.0001 3598 | 5/38
81 h-m-p 0.0001 0.0004 298.5481 ++ 6632.227112 m 0.0004 3639 | 5/38
82 h-m-p 0.0000 0.0002 1531.5725 +YYYYCCCC 6614.908029 7 0.0002 3691 | 5/38
83 h-m-p 0.0000 0.0000 3756.0289 +YCCC 6610.191647 3 0.0000 3738 | 5/38
84 h-m-p 0.0001 0.0004 152.7762 +YC 6608.886296 1 0.0003 3781 | 5/38
85 h-m-p 0.0000 0.0001 179.2470 +CCC 6608.261034 2 0.0001 3827 | 5/38
86 h-m-p 0.0001 0.0039 205.9129 ++YCCCC 6596.208939 4 0.0020 3877 | 5/38
87 h-m-p 0.0000 0.0002 789.6502 +YYYYYC 6590.529299 5 0.0002 3924 | 5/38
88 h-m-p 0.0001 0.0005 1273.8689 +CCCC 6579.789411 3 0.0004 3972 | 5/38
89 h-m-p 0.0025 0.0124 105.2359 CYCCC 6569.572062 4 0.0044 4020 | 5/38
90 h-m-p 0.0002 0.0008 240.9192 ++ 6566.133260 m 0.0008 4061 | 5/38
91 h-m-p -0.0000 -0.0000 70.4442
h-m-p: -3.28806861e-19 -1.64403431e-18 7.04441783e+01 6566.133260
.. | 5/38
92 h-m-p 0.0000 0.0001 190.0370 +YCYYCC 6564.768890 5 0.0001 4149 | 5/38
93 h-m-p 0.0000 0.0001 195.0954 CYCC 6564.351637 3 0.0000 4195 | 5/38
94 h-m-p 0.0001 0.0003 124.4994 YCCCC 6563.818126 4 0.0001 4243 | 5/38
95 h-m-p 0.0000 0.0001 393.7063 ++ 6562.189251 m 0.0001 4284 | 6/38
96 h-m-p 0.0001 0.0006 116.8103 CCC 6561.763453 2 0.0001 4329 | 6/38
97 h-m-p 0.0000 0.0002 118.7120 ++ 6561.168712 m 0.0002 4370 | 6/38
98 h-m-p -0.0000 -0.0000 117.4208
h-m-p: -2.52821081e-21 -1.26410540e-20 1.17420832e+02 6561.168712
.. | 6/38
99 h-m-p 0.0000 0.0003 89.2482 +YC 6560.897125 1 0.0001 4451 | 6/38
100 h-m-p 0.0001 0.0004 76.4530 CCC 6560.726464 2 0.0001 4496 | 6/38
101 h-m-p 0.0000 0.0002 74.8970 CYCC 6560.640248 3 0.0001 4542 | 6/38
102 h-m-p 0.0000 0.0006 92.0121 +C 6560.297957 0 0.0002 4584 | 6/38
103 h-m-p 0.0000 0.0007 409.6515 YCCC 6559.779428 3 0.0001 4630 | 6/38
104 h-m-p 0.0001 0.0007 161.7887 YCYCCC 6559.084364 5 0.0003 4679 | 6/38
105 h-m-p 0.0000 0.0002 547.0064 ++ 6557.217762 m 0.0002 4720 | 6/38
106 h-m-p 0.0000 0.0000 233.8756
h-m-p: 4.47146226e-21 2.23573113e-20 2.33875631e+02 6557.217762
.. | 6/38
107 h-m-p 0.0000 0.0004 70.6660 +YCC 6557.063395 2 0.0001 4803 | 6/38
108 h-m-p 0.0000 0.0002 56.4200 CCCC 6556.993795 3 0.0001 4850 | 6/38
109 h-m-p 0.0001 0.0058 59.0782 +YCCC 6556.710833 3 0.0004 4897 | 6/38
110 h-m-p 0.0001 0.0011 286.2728 +CCCC 6555.291561 3 0.0003 4945 | 6/38
111 h-m-p 0.0000 0.0001 176.2225 ++ 6555.091965 m 0.0001 4986 | 7/38
112 h-m-p 0.0003 0.0027 51.9282 +YYC 6554.619795 2 0.0009 5030 | 7/38
113 h-m-p 0.0001 0.0009 446.0540 YCC 6553.858078 2 0.0002 5074 | 7/38
114 h-m-p 0.0006 0.0050 141.0938 +CCCYC 6548.379516 4 0.0037 5124 | 7/38
115 h-m-p 0.0000 0.0001 13514.2961 YCC 6545.345913 2 0.0000 5168 | 7/38
116 h-m-p 0.0020 0.0102 200.9036 CCCCC 6538.945364 4 0.0036 5217 | 6/38
117 h-m-p 0.0007 0.0090 1060.9636 CYCCC 6534.633963 4 0.0006 5265 | 6/38
118 h-m-p 0.0018 0.0088 93.0951 ++ 6525.198708 m 0.0088 5306 | 7/38
119 h-m-p 0.0025 0.0127 41.2006 YYYC 6524.443047 3 0.0024 5350 | 6/38
120 h-m-p 0.0012 0.0080 84.0552 YCC 6523.678508 2 0.0020 5394 | 6/38
121 h-m-p 0.0090 0.0448 10.8391 +YC 6522.486653 1 0.0286 5437 | 6/38
122 h-m-p 0.0054 0.0272 14.3360 ++ 6521.320690 m 0.0272 5478 | 7/38
123 h-m-p 0.0119 0.0759 32.7232 CCCC 6519.750731 3 0.0156 5525 | 7/38
124 h-m-p 0.0076 0.0381 24.7820 YCCC 6518.853908 3 0.0133 5571 | 7/38
125 h-m-p 0.0103 0.0911 31.9929 CYC 6517.803655 2 0.0120 5615 | 7/38
126 h-m-p 0.0056 0.0282 58.1457 +YC 6515.306376 1 0.0160 5658 | 7/38
127 h-m-p 0.0327 0.1636 19.2950 CCYC 6513.637344 3 0.0321 5704 | 7/38
128 h-m-p 0.0376 0.3168 16.4697 CYCC 6511.789986 3 0.0502 5750 | 7/38
129 h-m-p 0.0234 0.2600 35.2917 YCCC 6508.557748 3 0.0395 5796 | 7/38
130 h-m-p 0.0381 0.1906 11.4104 CCC 6507.594007 2 0.0435 5841 | 7/38
131 h-m-p 0.0789 2.0945 6.2825 +YCCC 6505.664305 3 0.2045 5888 | 6/38
132 h-m-p 0.0598 0.5886 21.4801 --YC 6505.642849 1 0.0015 5932 | 6/38
133 h-m-p 0.0029 0.1495 10.7668 +YC 6505.327468 1 0.0223 5975 | 6/38
134 h-m-p 0.0722 1.3411 3.3202 +YC 6504.650788 1 0.1966 6018 | 6/38
135 h-m-p 0.1103 0.9424 5.9182 YCCC 6503.536240 3 0.2072 6064 | 6/38
136 h-m-p 0.1820 1.1077 6.7374 CYC 6502.459752 2 0.1853 6108 | 6/38
137 h-m-p 0.2894 1.4471 3.7867 YCC 6501.964633 2 0.1844 6152 | 6/38
138 h-m-p 0.3723 2.2897 1.8761 CCC 6501.444195 2 0.5530 6197 | 6/38
139 h-m-p 0.7816 3.9080 1.1766 YC 6501.320548 1 0.3473 6239 | 6/38
140 h-m-p 0.7908 8.0000 0.5167 YC 6501.209725 1 1.3682 6281 | 6/38
141 h-m-p 1.5788 7.8938 0.0926 C 6501.193331 0 1.3440 6354 | 6/38
142 h-m-p 0.7472 3.7360 0.0522 CC 6501.185277 1 1.1032 6429 | 6/38
143 h-m-p 0.4890 2.4450 0.0390 ++ 6501.177433 m 2.4450 6502 | 7/38
144 h-m-p 1.2843 8.0000 0.0742 -C 6501.176951 0 0.1241 6576 | 7/38
145 h-m-p 0.3099 8.0000 0.0297 +C 6501.175029 0 1.1577 6649 | 7/38
146 h-m-p 1.6000 8.0000 0.0200 Y 6501.174528 0 1.2255 6721 | 7/38
147 h-m-p 1.6000 8.0000 0.0104 C 6501.174381 0 1.5977 6793 | 7/38
148 h-m-p 1.6000 8.0000 0.0087 Y 6501.174245 0 3.4654 6865 | 7/38
149 h-m-p 1.6000 8.0000 0.0106 Y 6501.174151 0 2.8494 6937 | 7/38
150 h-m-p 1.6000 8.0000 0.0017 C 6501.174144 0 1.4820 7009 | 7/38
151 h-m-p 1.6000 8.0000 0.0004 C 6501.174144 0 1.4061 7081 | 7/38
152 h-m-p 1.6000 8.0000 0.0001 C 6501.174144 0 1.4693 7153 | 7/38
153 h-m-p 1.6000 8.0000 0.0000 Y 6501.174144 0 0.4000 7225 | 7/38
154 h-m-p 0.4021 8.0000 0.0000 C 6501.174144 0 0.3580 7297 | 7/38
155 h-m-p 0.5492 8.0000 0.0000 ---Y 6501.174144 0 0.0021 7372
Out..
lnL = -6501.174144
7373 lfun, 81103 eigenQcodon, 2580550 P(t)
end of tree file.
Time used: 37:48
Model 8: beta&w>1
TREE # 1
(1, 16, ((((((((10, 9), 8), 7), (4, 5)), (14, (18, 19))), ((11, 6), ((12, 13), 15))), (2, 3)), 17)); MP score: 1281
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
22
0.084887 0.081107 0.088684 0.020690 0.078233 0.084994 0.060005 0.071701 0.105899 0.066280 0.043752 0.033754 0.043919 0.061153 0.030297 0.035738 0.084671 0.027096 0.024876 0.098635 0.063775 0.074205 0.091040 0.047651 0.107209 0.015550 0.072915 0.055099 0.059571 0.028767 0.094708 0.093746 0.029437 0.096060 0.010897 1.482293 0.900000 0.652801 1.527408 1.300000
ntime & nrate & np: 35 2 40
Bounds (np=40):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 9.849648
np = 40
lnL0 = -8941.282117
Iterating by ming2
Initial: fx= 8941.282117
x= 0.08489 0.08111 0.08868 0.02069 0.07823 0.08499 0.06000 0.07170 0.10590 0.06628 0.04375 0.03375 0.04392 0.06115 0.03030 0.03574 0.08467 0.02710 0.02488 0.09864 0.06377 0.07421 0.09104 0.04765 0.10721 0.01555 0.07291 0.05510 0.05957 0.02877 0.09471 0.09375 0.02944 0.09606 0.01090 1.48229 0.90000 0.65280 1.52741 1.30000
1 h-m-p 0.0000 0.0001 7291.8539 ++ 7524.019464 m 0.0001 45 | 0/40
2 h-m-p 0.0000 0.0000 2174.2097 ++ 7507.799051 m 0.0000 88 | 1/40
3 h-m-p 0.0000 0.0000 2277.4608 ++ 7504.922666 m 0.0000 131 | 2/40
4 h-m-p 0.0000 0.0000 1663.2027 ++ 7465.914531 m 0.0000 174 | 3/40
5 h-m-p 0.0000 0.0000 1992.0572 ++ 7443.570842 m 0.0000 217 | 4/40
6 h-m-p 0.0000 0.0000 11252.5940 ++ 7406.534682 m 0.0000 260 | 5/40
7 h-m-p 0.0000 0.0001 1491.8311 ++ 7351.944483 m 0.0001 303 | 5/40
8 h-m-p 0.0000 0.0000 9157.8502 ++ 7325.288121 m 0.0000 346 | 5/40
9 h-m-p 0.0000 0.0000 3005.4157 +YCYYYYCCCC 7306.206953 9 0.0000 403 | 5/40
10 h-m-p 0.0000 0.0000 1529.3939 ++ 7287.138842 m 0.0000 446 | 5/40
11 h-m-p 0.0000 0.0000 1743.0248 +YYYCCC 7278.395371 5 0.0000 497 | 5/40
12 h-m-p 0.0001 0.0004 288.3268 +YYCCC 7269.311601 4 0.0003 547 | 5/40
13 h-m-p 0.0001 0.0004 199.1085 +YYCCC 7264.770814 4 0.0003 597 | 5/40
14 h-m-p 0.0000 0.0001 698.7663 CCCC 7263.311085 3 0.0000 646 | 5/40
15 h-m-p 0.0001 0.0010 168.3117 +YCCC 7259.980774 3 0.0004 695 | 5/40
16 h-m-p 0.0003 0.0014 235.9745 YCCC 7258.206928 3 0.0002 743 | 5/40
17 h-m-p 0.0002 0.0010 168.2374 CCCC 7256.149006 3 0.0003 792 | 5/40
18 h-m-p 0.0003 0.0013 124.1510 YCCC 7253.718215 3 0.0005 840 | 5/40
19 h-m-p 0.0012 0.0097 54.1637 CCC 7249.977198 2 0.0016 887 | 5/40
20 h-m-p 0.0007 0.0037 122.8390 CCC 7244.030005 2 0.0010 934 | 5/40
21 h-m-p 0.0009 0.0047 120.7084 YCCC 7229.728860 3 0.0019 982 | 5/40
22 h-m-p 0.0006 0.0030 114.2244 CCCC 7224.886179 3 0.0007 1031 | 5/40
23 h-m-p 0.0008 0.0042 104.3227 CCCC 7219.042805 3 0.0012 1080 | 5/40
24 h-m-p 0.0012 0.0067 99.2599 YCC 7212.135967 2 0.0021 1126 | 5/40
25 h-m-p 0.0010 0.0051 67.6091 CCC 7210.624691 2 0.0009 1173 | 5/40
26 h-m-p 0.0011 0.0054 54.8879 CC 7209.218739 1 0.0013 1218 | 5/40
27 h-m-p 0.0018 0.0089 37.1098 YCC 7208.429392 2 0.0012 1264 | 5/40
28 h-m-p 0.0015 0.0080 29.9313 CCC 7207.172330 2 0.0021 1311 | 5/40
29 h-m-p 0.0009 0.0102 67.8126 +YC 7203.300485 1 0.0025 1356 | 5/40
30 h-m-p 0.0016 0.0146 105.8576 CC 7196.534912 1 0.0025 1401 | 5/40
31 h-m-p 0.0018 0.0090 92.0335 CCCC 7188.810050 3 0.0029 1450 | 5/40
32 h-m-p 0.0023 0.0115 36.2338 YYC 7186.709749 2 0.0019 1495 | 5/40
33 h-m-p 0.0025 0.0257 27.2733 +YCC 7178.293925 2 0.0072 1542 | 5/40
34 h-m-p 0.0011 0.0055 98.0366 +YYCCC 7158.011504 4 0.0038 1592 | 5/40
35 h-m-p 0.0021 0.0105 64.0007 CYC 7154.410355 2 0.0019 1638 | 5/40
36 h-m-p 0.0026 0.0130 12.0144 YCCC 7152.274305 3 0.0060 1686 | 5/40
37 h-m-p 0.0061 0.0892 11.7860 ++ 7076.047415 m 0.0892 1729 | 5/40
38 h-m-p 0.0050 0.0252 28.2123 YCYCCC 7071.097809 5 0.0023 1780 | 5/40
39 h-m-p 0.0011 0.0073 57.0970 +YCC 7065.135405 2 0.0031 1827 | 5/40
40 h-m-p 0.0199 0.2195 9.0359 +CCC 7016.766107 2 0.0807 1875 | 5/40
41 h-m-p 0.0021 0.0106 82.8032 +YCCC 6980.747898 3 0.0072 1924 | 5/40
42 h-m-p 0.0180 0.0902 1.4989 ++ 6949.961696 m 0.0902 1967 | 5/40
43 h-m-p 0.0724 0.5879 1.8671 ++ 6802.778400 m 0.5879 2010 | 6/40
44 h-m-p 1.6000 8.0000 0.6091 +YCCCCC 6694.630895 5 4.6932 2063 | 6/40
45 h-m-p 0.9097 4.5485 0.2127 +YYCYCCC 6640.673222 6 4.3752 2151 | 6/40
46 h-m-p 0.0570 0.2850 0.4455 ++ 6635.793687 m 0.2850 2228 | 6/40
47 h-m-p 0.0000 0.0000 1.1171
h-m-p: 1.08622895e-18 5.43114476e-18 1.11712790e+00 6635.793687
.. | 6/40
48 h-m-p 0.0000 0.0001 4157.2870 CYCYCCC 6629.214811 6 0.0000 2355 | 6/40
49 h-m-p 0.0000 0.0001 255.8182 +YYYYC 6625.940393 4 0.0001 2403 | 6/40
50 h-m-p 0.0000 0.0000 1052.7896 +YCYCC 6623.586888 4 0.0000 2453 | 6/40
51 h-m-p 0.0000 0.0000 324.9850 YCCC 6623.042172 3 0.0000 2501 | 6/40
52 h-m-p 0.0000 0.0001 226.5386 +YCYC 6622.047822 3 0.0001 2549 | 5/40
53 h-m-p 0.0000 0.0001 797.0138 ++ 6617.115687 m 0.0001 2592 | 5/40
54 h-m-p 0.0000 0.0000 1916.3394
h-m-p: 1.30978993e-21 6.54894967e-21 1.91633937e+03 6617.115687
.. | 5/40
55 h-m-p 0.0000 0.0003 369.4572 +YCCC 6615.886264 3 0.0000 2681 | 5/40
56 h-m-p 0.0000 0.0001 150.7442 YCCC 6615.230896 3 0.0001 2729 | 5/40
57 h-m-p 0.0000 0.0001 311.0398 YCCC 6614.490233 3 0.0000 2777 | 5/40
58 h-m-p 0.0000 0.0001 618.8787 +YCCC 6612.735681 3 0.0001 2826 | 5/40
59 h-m-p 0.0000 0.0001 980.3953 ++ 6609.391870 m 0.0001 2869 | 5/40
60 h-m-p 0.0001 0.0004 767.4899 +CCCC 6596.399944 3 0.0004 2919 | 5/40
61 h-m-p 0.0000 0.0002 651.5770 +YYCCC 6591.850908 4 0.0002 2969 | 5/40
62 h-m-p 0.0000 0.0002 414.7317 YCYCCC 6589.760137 5 0.0001 3020 | 5/40
63 h-m-p 0.0000 0.0001 946.3652 ++ 6587.266906 m 0.0001 3063 | 5/40
64 h-m-p 0.0002 0.0010 167.7814 ++ 6581.126953 m 0.0010 3106 | 5/40
65 h-m-p 0.0001 0.0005 261.0873 ++ 6576.774703 m 0.0005 3149 | 5/40
66 h-m-p 0.0006 0.0031 79.7771 ++ 6572.156658 m 0.0031 3192 | 5/40
67 h-m-p 0.0002 0.0008 354.7439 ++ 6564.312539 m 0.0008 3235 | 6/40
68 h-m-p 0.0039 0.0201 70.3329 YCCCC 6554.041028 4 0.0078 3285 | 5/40
69 h-m-p 0.0003 0.0015 318.4994 +YCCC 6551.696083 3 0.0009 3334 | 5/40
70 h-m-p 0.0002 0.0011 83.2544 ++ 6549.803754 m 0.0011 3377 | 5/40
71 h-m-p 0.0000 0.0000 53.5215
h-m-p: 1.97148803e-20 9.85744013e-20 5.35215447e+01 6549.803754
.. | 5/40
72 h-m-p 0.0000 0.0000 156.9520 CYCCC 6549.576458 4 0.0000 3467 | 5/40
73 h-m-p 0.0000 0.0002 142.6197 +YCC 6549.263983 2 0.0000 3514 | 5/40
74 h-m-p 0.0001 0.0004 96.4233 +YCCC 6548.667980 3 0.0002 3563 | 5/40
75 h-m-p 0.0000 0.0001 314.9228 +YCCC 6548.421042 3 0.0000 3612 | 5/40
76 h-m-p 0.0000 0.0001 178.3044 ++ 6548.128478 m 0.0001 3655 | 5/40
77 h-m-p 0.0001 0.0013 86.0494 +YYCC 6547.388766 3 0.0004 3703 | 5/40
78 h-m-p 0.0001 0.0003 596.2720 YCCC 6546.169812 3 0.0001 3751 | 5/40
79 h-m-p 0.0000 0.0001 720.4391 +CCC 6545.147590 2 0.0001 3799 | 5/40
80 h-m-p 0.0001 0.0003 75.0715 +CYC 6544.908681 2 0.0002 3846 | 5/40
81 h-m-p 0.0001 0.0005 323.0867 +YCCC 6544.311116 3 0.0002 3895 | 5/40
82 h-m-p 0.0005 0.0026 41.9976 ++ 6542.722109 m 0.0026 3938 | 6/40
83 h-m-p 0.0007 0.0035 47.8565 ++ 6540.508156 m 0.0035 3981 | 6/40
84 h-m-p 0.0009 0.0046 99.3746 ++ 6534.747667 m 0.0046 4024 | 7/40
85 h-m-p 0.0008 0.0039 213.0666 YCCCC 6531.837669 4 0.0019 4074 | 6/40
86 h-m-p 0.0000 0.0002 3468.9018 YCCC 6530.570876 3 0.0001 4122 | 6/40
87 h-m-p 0.0002 0.0010 48.2816 ++ 6530.005963 m 0.0010 4165 | 7/40
88 h-m-p 0.0030 0.0454 16.8545 CCC 6529.810745 2 0.0028 4212 | 7/40
89 h-m-p 0.0013 0.0437 37.7320 +CCC 6528.673067 2 0.0072 4260 | 7/40
90 h-m-p 0.0110 0.0766 24.7248 CCCC 6527.213005 3 0.0147 4309 | 7/40
91 h-m-p 0.0158 0.0993 23.0034 +YC 6520.509980 1 0.0799 4354 | 7/40
92 h-m-p 0.0104 0.0519 53.3928 +CYC 6512.783645 2 0.0393 4401 | 7/40
93 h-m-p 0.0062 0.0310 47.1774 ++ 6507.342381 m 0.0310 4444 | 7/40
94 h-m-p 0.0219 0.1096 29.9029 YCCC 6502.822618 3 0.0433 4492 | 6/40
95 h-m-p 0.0033 0.0167 147.9256 CYC 6502.436140 2 0.0007 4538 | 6/40
96 h-m-p 0.0034 0.1288 31.1495 +YC 6499.174780 1 0.0327 4583 | 6/40
97 h-m-p 0.0408 0.2039 11.6879 CCC 6497.122623 2 0.0624 4630 | 6/40
98 h-m-p 0.0350 0.1751 15.8758 CYC 6495.599028 2 0.0373 4676 | 5/40
99 h-m-p 0.0008 0.0039 559.9677 -YCC 6495.499672 2 0.0001 4723 | 5/40
100 h-m-p 0.0064 0.2508 6.7203 ++YC 6493.431761 1 0.1322 4769 | 5/40
101 h-m-p 0.0300 0.1499 7.0344 ++ 6491.460548 m 0.1499 4812 | 6/40
102 h-m-p 0.1718 0.8590 5.1513 CCC 6490.231825 2 0.1599 4859 | 6/40
103 h-m-p 0.0552 0.2761 14.4159 +CCC 6486.136982 2 0.1983 4907 | 6/40
104 h-m-p 0.2295 1.1477 6.9952 CYCC 6483.746606 3 0.2948 4955 | 6/40
105 h-m-p 0.5193 2.5965 2.7092 CCC 6482.490209 2 0.6626 5002 | 6/40
106 h-m-p 0.5593 3.6627 3.2100 CYC 6481.609910 2 0.6632 5048 | 5/40
107 h-m-p 0.0020 0.0100 967.3531 -YCC 6481.577083 2 0.0001 5095 | 5/40
108 h-m-p 0.0386 1.8503 2.0716 ++CCC 6481.187524 2 0.8320 5144 | 5/40
109 h-m-p 0.0741 0.3703 1.9718 ++ 6481.027712 m 0.3703 5187 | 6/40
110 h-m-p 0.6003 8.0000 1.2163 YCC 6480.896542 2 1.1066 5233 | 6/40
111 h-m-p 1.4689 7.3446 0.3724 YC 6480.868019 1 0.7162 5277 | 5/40
112 h-m-p 0.0004 0.0038 656.4934 C 6480.859548 0 0.0004 5354 | 5/40
113 h-m-p 1.6000 8.0000 0.1136 CC 6480.805264 1 2.5173 5399 | 5/40
114 h-m-p 1.2085 8.0000 0.2366 +CC 6480.656577 1 5.3544 5480 | 5/40
115 h-m-p 0.6001 3.0007 0.5288 +C 6480.520648 0 2.4006 5559 | 5/40
116 h-m-p 0.0929 0.4646 0.5886 ++ 6480.474383 m 0.4646 5637 | 6/40
117 h-m-p 0.0876 0.4381 0.7118 CC 6480.470719 1 0.1178 5717 | 6/40
118 h-m-p 0.0928 8.0000 0.9029 +C 6480.442345 0 0.3714 5795 | 6/40
119 h-m-p 1.6000 8.0000 0.0522 CC 6480.437015 1 1.9260 5874 | 6/40
120 h-m-p 1.6000 8.0000 0.0369 +YC 6480.431966 1 4.0424 5953 | 6/40
121 h-m-p 1.6000 8.0000 0.0363 +C 6480.420999 0 6.0897 6031 | 6/40
122 h-m-p 0.4642 2.3212 0.1188 ++ 6480.413202 m 2.3212 6108 | 6/40
123 h-m-p -0.0000 -0.0000 0.2350
h-m-p: -8.51112001e-18 -4.25556000e-17 2.34967717e-01 6480.413202
.. | 6/40
124 h-m-p 0.0000 0.0215 6.3081 +YC 6480.411064 1 0.0001 6261 | 6/40
125 h-m-p 0.0000 0.0000 2.4503 ++ 6480.411027 m 0.0000 6304 | 7/40
126 h-m-p 0.0000 0.0235 1.4084 C 6480.410981 0 0.0001 6347 | 7/40
127 h-m-p 0.0001 0.0460 1.2084 Y 6480.410913 0 0.0002 6390 | 7/40
128 h-m-p 0.0001 0.0494 2.3049 Y 6480.410795 0 0.0002 6433 | 7/40
129 h-m-p 0.0004 0.0184 1.2152 C 6480.410771 0 0.0001 6476 | 7/40
130 h-m-p 0.0001 0.0683 1.1158 Y 6480.410705 0 0.0003 6519 | 7/40
131 h-m-p 0.0005 0.2640 3.0258 YC 6480.410234 1 0.0009 6563 | 7/40
132 h-m-p 0.0019 0.0564 1.3654 -Y 6480.410193 0 0.0002 6607 | 7/40
133 h-m-p 0.0003 0.1511 2.4284 C 6480.410039 0 0.0004 6650 | 7/40
134 h-m-p 0.0052 2.4708 0.2046 +C 6480.409738 0 0.0196 6694 | 7/40
135 h-m-p 0.0023 0.2398 1.7338 Y 6480.409544 0 0.0016 6770 | 7/40
136 h-m-p 0.0025 0.4211 1.0917 YC 6480.409107 1 0.0060 6814 | 7/40
137 h-m-p 0.0247 1.4426 0.2638 YC 6480.408894 1 0.0154 6858 | 7/40
138 h-m-p 0.0182 1.4425 0.2225 YC 6480.408543 1 0.0380 6935 | 7/40
139 h-m-p 0.0304 1.0937 0.2774 Y 6480.408349 0 0.0195 7011 | 7/40
140 h-m-p 0.0369 2.1035 0.1466 C 6480.408227 0 0.0295 7087 | 7/40
141 h-m-p 0.0437 3.5792 0.0990 C 6480.408090 0 0.0641 7163 | 7/40
142 h-m-p 0.1385 8.0000 0.0458 C 6480.408062 0 0.0438 7239 | 7/40
143 h-m-p 0.0817 8.0000 0.0246 Y 6480.408055 0 0.0332 7315 | 7/40
144 h-m-p 0.0492 8.0000 0.0166 +C 6480.408033 0 0.2240 7392 | 7/40
145 h-m-p 0.0484 8.0000 0.0768 Y 6480.408019 0 0.0353 7468 | 7/40
146 h-m-p 0.0959 8.0000 0.0282 Y 6480.407992 0 0.2036 7544 | 7/40
147 h-m-p 0.1085 8.0000 0.0530 Y 6480.407974 0 0.0802 7620 | 7/40
148 h-m-p 0.2087 8.0000 0.0204 C 6480.407958 0 0.2334 7696 | 7/40
149 h-m-p 0.1391 8.0000 0.0342 Y 6480.407926 0 0.3148 7772 | 7/40
150 h-m-p 0.5623 8.0000 0.0191 C 6480.407886 0 0.8103 7848 | 7/40
151 h-m-p 1.6000 8.0000 0.0092 C 6480.407877 0 0.5096 7924 | 7/40
152 h-m-p 0.4870 8.0000 0.0096 C 6480.407866 0 0.5946 8000 | 7/40
153 h-m-p 1.6000 8.0000 0.0026 Y 6480.407865 0 0.6431 8076 | 7/40
154 h-m-p 0.5952 8.0000 0.0028 +Y 6480.407855 0 5.1436 8153 | 7/40
155 h-m-p 1.6000 8.0000 0.0085 +Y 6480.407833 0 4.0636 8230 | 7/40
156 h-m-p 1.6000 8.0000 0.0083 C 6480.407823 0 2.1455 8306 | 7/40
157 h-m-p 1.6000 8.0000 0.0008 C 6480.407823 0 1.4527 8382 | 7/40
158 h-m-p 1.6000 8.0000 0.0002 Y 6480.407823 0 1.1742 8458 | 7/40
159 h-m-p 1.6000 8.0000 0.0000 -Y 6480.407823 0 0.1000 8535 | 7/40
160 h-m-p 0.0264 8.0000 0.0001 -------------.. | 7/40
161 h-m-p 0.0160 8.0000 0.0001 ---------C 6480.407823 0 0.0000 8707
Out..
lnL = -6480.407823
8708 lfun, 104496 eigenQcodon, 3352580 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -6568.248267 S = -6465.843489 -100.288357
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 214 patterns 1:08:13
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did 214 / 214 patterns 1:08:17end of tree file.
Time used: 1:08:18
The loglikelihoods for models M1, M2, M7 and M8 are -6522.468689 -6522.468689 -6501.174144 -6480.407823 respectively
The loglikelihood for model M8 is significantly different from that for M7. Twice the difference is 41.532642
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
16BO133_M_ASO66812_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWIMLLQFAYSNR
Anlong_103_NA_ARI44801_1_2013_China_Bat_Bat_coronavirus -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWIMLLQFAYSNR
Anlong_112_NA_ARI44806_1_2013_China_Bat_Bat_coronavirus -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWIMLLQFAYSNR
Anlong_43_NA_ARI44791_1_2013_China_Bat_Bat_coronavirus ------------------MSGSNHTVPVGEVLEHLRNWSFAWNIILTVLIVMLQYGNFKY
Anlong_57_NA_ARI44796_1_2013_China_Bat_Bat_coronavirus ------------------MSGSNQTVPVGEVLEHLRNWSFAWNIILTVLIVMLQYGNFKY
BtCoV92_M_QEH60466_1_2015_Singapore_Bat_Bat_coronavirus ------------------MTESNATLPKAEVLAAVRDWNFTLSLFLLFITILLQWGYPSR
BtCoV_Rh_YN2012_Ra13591_M_QBP43295_1_2013_06_01_China_Unknown_Bat_coronavirus MNIFCLLCVMALVPYTFADSSTNNSIPVDQVVEHLRNWNFSWNIILTVFLVVLQYGQYKY
BtCoV_Rh_YN2012_Rs3376_M_QBP43262_1_2012_05_19_China_Unknown_Bat_coronavirus -------------------MTDNGTISVEQVVAHLRNWNFSWNVILTVFLIVLQYGHYKY
BtCoV_Rh_YN2012_Rs4125_M_QBP43273_1_2012_09_16_China_Unknown_Bat_coronavirus -----------------MSNSTSGTIPVEQVVEHLRNWNFSWNVILTIFLIVLQYGQYKY
BtCoV_Rh_YN2012_Rs4259_M_QBP43284_1_2013_04_17_China_Unknown_Bat_coronavirus -----------------MSNSTSGTIPVEQVVEHLRNWNFSWNVILTIFLIVLQYGQYKY
CMR66_NA_AWV67058_1_2013_12_Cameroon_Bat_Bat_coronavirus ----------------MSGECNNNTVSRTEVIAALKDWNFAVSVLLLFITVLLQWGYPSR
CMR704_P12_M_YP_009824992_1_2013_12_Cameroon_Bat_Bat_coronavirus ------------------MSSSNSTFSKEEVFKAVKDWNFAVAILLLFVTILLQWGYPSR
CMR705_P13_NA_AWV67074_1_2013_12_Cameroon_Bat_Bat_coronavirus ------------------MSSSNSTFSKEEVFKAVKDWNFAVAILLLFVTILLQWGYPSR
JPDB144_M_ANA96045_1_2012_12_China_Bat_Bat_coronavirus -------------------MSSNGSLTKDEVVNIIKDWNFSWSIIFLLITIVLQYGYPSR
CMR900_NA_AWV67050_1_2013_12_Cameroon_Bat_Bat_coronavirus ------------------MSSDNSTFSKEEVFKAVRDWNFAVAILLLFVTILLQWGYPSR
JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus -------------------MADNGTISVEELKRLLEQWNLVIGFLFLAWIMLLQFAYSNR
Jiyuan_84_NA_ARI44811_1_2012_China_Bat_Bat_coronavirus -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWIMLLQFAYSNR
PREDICT_PDF_2180_M_ARJ34232_1_2013_02_20_Uganda_Bat_Bat_coronavirus -------------------MSNMTQLTEQQIISIIKDWNFAWSLIFLLITIVLQYGYPSR
Vs_CoV_1_M_BBJ36014_1_NA_Japan_Bat_Bat_coronavirus --------------------MSNSSLTNEQIVSIIKDWNFAWSIIFLLITIVLQYGYPSR
.. :: :.:*.: .:: ::**:. .
16BO133_M_ASO66812_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus NRLLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGIAIAMACIVGLMWLSYFFASF
Anlong_103_NA_ARI44801_1_2013_China_Bat_Bat_coronavirus NRFLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGIAIAMACIVGLMWLSYFVASF
Anlong_112_NA_ARI44806_1_2013_China_Bat_Bat_coronavirus NRFLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGIAIAMACIVGLMWLSYFVASF
Anlong_43_NA_ARI44791_1_2013_China_Bat_Bat_coronavirus SKILYGIKMAVLWLLWPCVIALSVTNAWADFNVNWAYFGISIFMLVVTLVLWIMYFLNSF
Anlong_57_NA_ARI44796_1_2013_China_Bat_Bat_coronavirus SKILYGIKMAVLWLLWPCVIALSVTNAWADFNVNWAYFGISIFMLVVTLVLWIMYFLNSF
BtCoV92_M_QEH60466_1_2015_Singapore_Bat_Bat_coronavirus CKPLWVVKMCILWLLWPLSIAAAVFAAV--YPINQVAFGFAIAFACISGLMWLCYFISSF
BtCoV_Rh_YN2012_Ra13591_M_QBP43295_1_2013_06_01_China_Unknown_Bat_coronavirus SVVLYVLKMLVLWLLWPLVLALSIFDAVVSFGDNWTYFAFSILMACITFVLWIMYFANSF
BtCoV_Rh_YN2012_Rs3376_M_QBP43262_1_2012_05_19_China_Unknown_Bat_coronavirus SVVLYSLKMMILWLLWPLVLALSIFDSWASFGVNWTFFAFSILMCCITFILWVMYFVNSF
BtCoV_Rh_YN2012_Rs4125_M_QBP43273_1_2012_09_16_China_Unknown_Bat_coronavirus SVVLYGLKMLILWLLWPLVLALSIFDSWASFGVNWTFFAFSILMSCLTLILWMMYFINSF
BtCoV_Rh_YN2012_Rs4259_M_QBP43284_1_2013_04_17_China_Unknown_Bat_coronavirus SVVLYGLKMLILWLLWPLVLALSIFDSWASFGVNWTFFAFSILMSCITLILWMMYFINSF
CMR66_NA_AWV67058_1_2013_12_Cameroon_Bat_Bat_coronavirus CKPIWVIKMFILWLLWPLSIAAAVFAAI--HPINSVSFGFAIAFACISGIMWLSYFISSF
CMR704_P12_M_YP_009824992_1_2013_12_Cameroon_Bat_Bat_coronavirus VKAIWVVKMFILWLLWPVSIAASVFAAV--YPINKVAFGFAIAFACITALMWLSYFVSSL
CMR705_P13_NA_AWV67074_1_2013_12_Cameroon_Bat_Bat_coronavirus VKAIWVVKMFILWLLWPVSIAASVFAAV--YPINKVAFGFAIAFACITALMWLSYFVSSL
JPDB144_M_ANA96045_1_2012_12_China_Bat_Bat_coronavirus SMTVYVFKMFILWLLWPASMALSIFSAI--YPISLASQIISGILAAACAGMWLAYFIQSI
CMR900_NA_AWV67050_1_2013_12_Cameroon_Bat_Bat_coronavirus IKAIWVVKMFILWLLWPVSIAASVFAAV--YPINKVAFGFAIAFACITALMWLSYFVSSL
JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus NRLLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGIAIAMACIVGLMWLSYFFASF
Jiyuan_84_NA_ARI44811_1_2012_China_Bat_Bat_coronavirus NRLLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGIAIAMACIVGLMWLSYFVASF
PREDICT_PDF_2180_M_ARJ34232_1_2013_02_20_Uganda_Bat_Bat_coronavirus SMTVYVFKMFVLWLLWPSSMALSIFSAV--YPIDLASQIISGIIAGVSALMWISYFVQSI
Vs_CoV_1_M_BBJ36014_1_NA_Japan_Bat_Bat_coronavirus SMTVYVFKMFVLWLLWPASMALSIFSAI--YPVDLSTQIISGIIAFISACMWISYFVQSI
:: .*: .****** :* : : . . :: : :*: ** *:
16BO133_M_ASO66812_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus RLFARTRSMWSFNPETNILLNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-C
Anlong_103_NA_ARI44801_1_2013_China_Bat_Bat_coronavirus RLFARTRSMWSFNPETNILLNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-C
Anlong_112_NA_ARI44806_1_2013_China_Bat_Bat_coronavirus RLFARTRSMWSFNPETNILLNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-C
Anlong_43_NA_ARI44791_1_2013_China_Bat_Bat_coronavirus RLYRRTRSFWAFNPETDSIIVFSVYGTTYSIPVIQAPQGITFTILSGTLLVDGIKIATAV
Anlong_57_NA_ARI44796_1_2013_China_Bat_Bat_coronavirus RLYRRTRSFWAFNPETDSIIVFSVYGTTYSIPVIQAPQGITFTILSGTLLVDGIKIATAV
BtCoV92_M_QEH60466_1_2015_Singapore_Bat_Bat_coronavirus RLLCRTGSAWSFMPETDMLLNVPLLGRTVTRPILADSPAIQFLLVRGEIQFEGFKLGR-C
BtCoV_Rh_YN2012_Ra13591_M_QBP43295_1_2013_06_01_China_Unknown_Bat_coronavirus RLYRRTNSFWAFNPETDAIITLSVLGRQVSIPIIVAPTGITLTCLNGTLLVEGIKVATGV
BtCoV_Rh_YN2012_Rs3376_M_QBP43262_1_2012_05_19_China_Unknown_Bat_coronavirus RLYRRTQTFWAFNPETDAIMTLSVLGRQVSIPVIVAPTGITLTVLSGTLLMEGIKVATGV
BtCoV_Rh_YN2012_Rs4125_M_QBP43273_1_2012_09_16_China_Unknown_Bat_coronavirus RLYRRTQTFWAFNPETDAIITLSVFGRQVSIPTIVAPTGITLTVLSGTLLVEGIKVATGV
BtCoV_Rh_YN2012_Rs4259_M_QBP43284_1_2013_04_17_China_Unknown_Bat_coronavirus RLYRRTQTFWAFNPETDAIITLSVFGRQVSIPTIVAPTGITLTVLSGTLLVEGIKVATGV
CMR66_NA_AWV67058_1_2013_12_Cameroon_Bat_Bat_coronavirus RLLCRTGSAWSFMPETDMLINIPLLGRTVTRPIIADSPAVQFLIIRGELRFDGFTLGR-C
CMR704_P12_M_YP_009824992_1_2013_12_Cameroon_Bat_Bat_coronavirus RLLCRTGSWWAFMPETNMLLNVPFIGRTVTRPILNDSAALQFFILRGQVQFEGFVLGK-C
CMR705_P13_NA_AWV67074_1_2013_12_Cameroon_Bat_Bat_coronavirus RLLCRTGSWWAFMPETNMLLNVPFIGRTVTRPILNDSAALQFFILRGQVQFEGFVLGK-C
JPDB144_M_ANA96045_1_2012_12_China_Bat_Bat_coronavirus RLFMRTGSWWSFNPESNCLLNVPIGGTTVVRPLVEDSTSVTAVVNDGHLKMAGMHFGR-C
CMR900_NA_AWV67050_1_2013_12_Cameroon_Bat_Bat_coronavirus RLLCRTGSWWAFMPETNMLLNVPFIGRTVTRPILNDSAALQFFVLRGQVQFDGFILGK-C
JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus RLFARTRSMWSFNPETNILLNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-C
Jiyuan_84_NA_ARI44811_1_2012_China_Bat_Bat_coronavirus RLFARTRSMWSFNPETNILLNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-C
PREDICT_PDF_2180_M_ARJ34232_1_2013_02_20_Uganda_Bat_Bat_coronavirus RLFMRTGSWWSFNPETNCLLNVPLGGTTVVRPLVEDSTSVTAVVANGYLKMAGMHFGA-C
Vs_CoV_1_M_BBJ36014_1_NA_Japan_Bat_Bat_coronavirus RLFMRTGSWWSFNPETNCLLNVPIGGTTVVRPLVEDSTSVTAVVTNGYLKIAGMHFGQ-C
** ** : *:* **:: :: ... * * : : * : . * ..
16BO133_M_ASO66812_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus DIKDLPKEITVATSR-TLSYYKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHSGS--NDN
Anlong_103_NA_ARI44801_1_2013_China_Bat_Bat_coronavirus DIKDLPKEITVATSR-TLSYYKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHAGS--NDN
Anlong_112_NA_ARI44806_1_2013_China_Bat_Bat_coronavirus DIKDLPKEITVATSR-TLSYYKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHAGS--NDN
Anlong_43_NA_ARI44791_1_2013_China_Bat_Bat_coronavirus RIDALPQYVTVAKATTTIVFHRVGKAVNERTQTGWLFFVRSGYGDYAAHSTGTGQMTESE
Anlong_57_NA_ARI44796_1_2013_China_Bat_Bat_coronavirus RIDALPQYVTVAKATTTIVFHRVGKAVNERTQTGWLFFVRSGYGDYAAHSTGTGQMTESE
BtCoV92_M_QEH60466_1_2015_Singapore_Bat_Bat_coronavirus DPGDMPDIVTVAKPA-SLHWYKKALTRNIGVKSAIIVYIKYKVGNHRVQNTTEDG---ER
BtCoV_Rh_YN2012_Ra13591_M_QBP43295_1_2013_06_01_China_Unknown_Bat_coronavirus QVSQLPTYITVAKPTTTIVYQRAGRSLNARSNTGWAFYVRSKNGDYSAVTSGVESITEEE
BtCoV_Rh_YN2012_Rs3376_M_QBP43262_1_2012_05_19_China_Unknown_Bat_coronavirus QVNQLPSYITVAKPTTTIIYQRAGRSLNTRSQTGWAFYVRSKNGDYSAVTSHSDSVTDEE
BtCoV_Rh_YN2012_Rs4125_M_QBP43273_1_2012_09_16_China_Unknown_Bat_coronavirus QVSQLPTYITVAKPSTTIVYQRAGRSLNTRSNTGWAFYVRSKNGDYSAVASHSDSLTEDE
BtCoV_Rh_YN2012_Rs4259_M_QBP43284_1_2013_04_17_China_Unknown_Bat_coronavirus QVSQLPTYITVAKPSTTIVYQRAGRSLNTRSNTGWAFYVRSKNGDYSAVASHSDSLTEDE
CMR66_NA_AWV67058_1_2013_12_Cameroon_Bat_Bat_coronavirus DPNDMPDIVTIARPN-SLHWYKRALTRNIGTRSAILVYIKYKVGNHRVQNTTEDG---DR
CMR704_P12_M_YP_009824992_1_2013_12_Cameroon_Bat_Bat_coronavirus APTEMPEVVTVAKAG-SLVWYKKALTRTVGPKSGVVVYIKFKVGNHRVQNANDDD---GQ
CMR705_P13_NA_AWV67074_1_2013_12_Cameroon_Bat_Bat_coronavirus APTEMPEVVTVAKAG-SLVWYKKALTRTVGPKSGVVVYIKFKVGNHRVQNANDDD---GQ
JPDB144_M_ANA96045_1_2012_12_China_Bat_Bat_coronavirus DYDRLPMEITVAKPS-VLIALKMVKRQSYGTNSGVAIFHRYKAGNYRWPTIIQDE----E
CMR900_NA_AWV67050_1_2013_12_Cameroon_Bat_Bat_coronavirus APQEMPEVVTVAKAS-SLVWYKKALTRTVGPKSGVVVYIKFKVGNHRVQNANDDD---GQ
JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus DIKDLPKEITVATSR-TLSYYKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHSGS--NDN
Jiyuan_84_NA_ARI44811_1_2012_China_Bat_Bat_coronavirus DIKDLPKEITVATSR-TLSYYKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHSGS--NDN
PREDICT_PDF_2180_M_ARJ34232_1_2013_02_20_Uganda_Bat_Bat_coronavirus DYDRLPSEVTVAKPN-VLIALKMVKRQSYGTNSGVAIYHRYKAGNYRSPPITADS----E
Vs_CoV_1_M_BBJ36014_1_NA_Japan_Bat_Bat_coronavirus DYRSLPNEVTVAKPN-VLIALKMVKRQDYGTNSGVAIYHRYKAGNYRRPAIVPDA----E
:* :*:* . : : :. : : *:: .
16BO133_M_ASO66812_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus IALLVQ
Anlong_103_NA_ARI44801_1_2013_China_Bat_Bat_coronavirus IALLVQ
Anlong_112_NA_ARI44806_1_2013_China_Bat_Bat_coronavirus IALLVQ
Anlong_43_NA_ARI44791_1_2013_China_Bat_Bat_coronavirus KLLHIA
Anlong_57_NA_ARI44796_1_2013_China_Bat_Bat_coronavirus KLLHIA
BtCoV92_M_QEH60466_1_2015_Singapore_Bat_Bat_coronavirus LAMFVA
BtCoV_Rh_YN2012_Ra13591_M_QBP43295_1_2013_06_01_China_Unknown_Bat_coronavirus KVLHLV
BtCoV_Rh_YN2012_Rs3376_M_QBP43262_1_2012_05_19_China_Unknown_Bat_coronavirus KVLHLV
BtCoV_Rh_YN2012_Rs4125_M_QBP43273_1_2012_09_16_China_Unknown_Bat_coronavirus KVLHLV
BtCoV_Rh_YN2012_Rs4259_M_QBP43284_1_2013_04_17_China_Unknown_Bat_coronavirus KVLHLV
CMR66_NA_AWV67058_1_2013_12_Cameroon_Bat_Bat_coronavirus LAMFAA
CMR704_P12_M_YP_009824992_1_2013_12_Cameroon_Bat_Bat_coronavirus LAMFLA
CMR705_P13_NA_AWV67074_1_2013_12_Cameroon_Bat_Bat_coronavirus LAMFLA
JPDB144_M_ANA96045_1_2012_12_China_Bat_Bat_coronavirus LALLRA
CMR900_NA_AWV67050_1_2013_12_Cameroon_Bat_Bat_coronavirus LAMFLA
JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus IALLVQ
Jiyuan_84_NA_ARI44811_1_2012_China_Bat_Bat_coronavirus IALLVQ
PREDICT_PDF_2180_M_ARJ34232_1_2013_02_20_Uganda_Bat_Bat_coronavirus LALLRA
Vs_CoV_1_M_BBJ36014_1_NA_Japan_Bat_Bat_coronavirus LALLRA
:
>16BO133_M_ASO66812_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus ---------------------------------------------------------ATGGCTGAGAACGGAACCATTTCTGTTGAGGAGCTTAAAAGACTCCTGGAACAATGGAACCTAGTAATAGGCTTCCTCTTCCTCGCCTGGATTATGTTATTACAATTTGCCTATTCTAATCGGAACAGGCTTTTGTACATAATAAAGCTTGTCTTCCTCTGGCTCTTGTGGCCAGTAACACTTGCTTGCTTTGTGCTTGCTGCTGTT------TACAGAATTAATTGGGTGACTGGCGGTATTGCGATTGCAATGGCTTGCATCGTAGGCTTGATGTGGCTTAGCTACTTCTTTGCTTCCTTCAGGCTGTTTGCTCGTACCCGCTCAATGTGGTCATTCAACCCAGAAACAAACATTCTTCTCAATGTGCCTCTTCGAGGGACAATTGTAACCAGACCGCTCATGGAAAGTGAACTTGTCATTGGCGCTGTGATCATTCGTGGTCACCTGCGAATGGCTGGACACTCCTTAGGGCGC---TGTGATATTAAGGACCTGCCAAAGGAGATCACTGTGGCTACATCACGA---ACGCTTTCTTATTACAAATTAGGAGCTTCGCAGCGTGTAGGCACTGATTCAGGTTTTGCTGCATACAACCGCTACCGTATTGGAAATTACAAATTAAACACAGACCACTCTGGTAGC------AACGACAATATTGCTTTGCTAGTACAG >Anlong_103_NA_ARI44801_1_2013_China_Bat_Bat_coronavirus ---------------------------------------------------------ATGGCTGAGAACGGGACTATTTCCGTTGAGGAGCTTAAAAGACTCCTGGAACAATGGAACCTAGTAATAGGTTTCCTATTCCTAGCCTGGATTATGTTACTACAATTTGCCTATTCTAACCGGAACAGGTTTTTGTACATAATAAAGCTTGTTTTCCTGTGGCTCTTGTGGCCAGTAACACTTGCTTGCTTTGTGCTTGCTGCTGTT------TACAGAATTAATTGGGTGACTGGCGGGATTGCAATTGCAATGGCTTGTATTGTAGGCTTGATGTGGCTTAGCTACTTCGTTGCTTCCTTCAGGCTGTTTGCTCGTACCCGCTCAATGTGGTCATTCAACCCAGAAACAAACATTCTTCTCAATGTGCCTCTTCGAGGGACAATTGTGACCAGACCGCTCATGGAAAGTGAACTTGTCATTGGTGCTGTGATCATTCGTGGTCACTTGCGAATGGCTGGACACTCCCTCGGGCGC---TGTGACATTAAGGACCTGCCTAAAGAGATCACTGTGGCTACATCACGA---ACGCTTTCTTATTACAAATTAGGAGCGTCGCAGCGTGTAGGCACTGATTCAGGTTTTGCTGCATACAACCGCTACCGTATTGGAAACTACAAATTAAATACAGACCACGCCGGTAGC------AACGACAATATTGCTTTGCTAGTACAG >Anlong_112_NA_ARI44806_1_2013_China_Bat_Bat_coronavirus ---------------------------------------------------------ATGGCTGAGAACGGGACTATTTCCGTTGAGGAGCTTAAAAGACTCCTGGAACAATGGAACCTAGTAATAGGTTTCCTATTCCTAGCCTGGATTATGTTACTACAATTTGCCTATTCTAACCGGAACAGGTTTTTGTACATAATAAAGCTTGTTTTCCTGTGGCTCTTGTGGCCAGTAACACTTGCTTGCTTTGTGCTTGCTGCTGTT------TACAGAATTAATTGGGTGACTGGCGGGATTGCAATTGCAATGGCTTGTATTGTAGGCTTGATGTGGCTTAGCTACTTCGTTGCTTCCTTCAGGCTGTTTGCTCGTACCCGCTCAATGTGGTCATTCAACCCAGAAACAAACATTCTTCTCAATGTGCCTCTTCGAGGGACAATTGTGACCAGACCGCTCATGGAAAGTGAACTTGTCATTGGTGCTGTGATCATTCGTGGTCACTTGCGAATGGCTGGACACTCCCTCGGGCGC---TGTGACATTAAGGACCTGCCTAAAGAGATCACTGTGGCTACATCACGA---ACGCTTTCTTATTACAAATTAGGAGCGTCGCAGCGTGTAGGCACTGATTCAGGTTTTGCTGCATACAACCGCTACCGTATTGGAAACTACAAATTAAATACAGACCACGCCGGTAGC------AACGACAATATTGCTTTGCTAGTACAG >Anlong_43_NA_ARI44791_1_2013_China_Bat_Bat_coronavirus ------------------------------------------------------ATGAGTGGCAGTAACCATACTGTCCCCGTCGGGGAAGTTCTCGAACATCTCCGTAACTGGAGTTTTGCCTGGAACATAATATTAACTGTGTTAATAGTTATGCTCCAATACGGCAACTTTAAGTACAGCAAAATCCTGTATGGGATTAAAATGGCTGTGTTATGGCTGCTTTGGCCTTGTGTCATTGCACTCTCTGTAACTAATGCCTGGGCTGACTTCAATGTTAATTGGGCGTATTTTGGCATCAGCATTTTTATGCTTGTTGTCACATTAGTACTCTGGATTATGTATTTTCTGAACAGTTTCCGCCTTTACAGGCGAACCAGGAGCTTCTGGGCCTTTAACCCGGAAACTGATTCTATAATTGTCTTTTCTGTCTATGGAACAACCTATTCCATTCCAGTGATCCAAGCCCCTCAGGGCATTACATTCACAATCCTCAGTGGTACACTTTTGGTCGACGGCATAAAAATTGCAACAGCGGTGCGCATTGATGCACTGCCGCAATATGTCACTGTGGCTAAGGCTACTACGACCATTGTGTTCCACAGAGTTGGAAAGGCTGTGAATGAAAGGACCCAAACGGGATGGCTGTTCTTCGTTCGGTCGGGCTATGGTGACTACGCTGCTCATTCTACCGGAACAGGACAGATGACAGAAAGTGAAAAATTGCTTCATATAGCA >Anlong_57_NA_ARI44796_1_2013_China_Bat_Bat_coronavirus ------------------------------------------------------ATGAGTGGCAGTAATCAAACTGTCCCCGTCGGGGAAGTTCTCGAACATCTCCGTAACTGGAGTTTTGCCTGGAACATAATATTAACTGTGTTAATAGTTATGCTCCAATATGGCAACTTTAAGTACAGCAAAATCCTGTATGGGATTAAAATGGCTGTGTTATGGCTGCTTTGGCCTTGTGTCATTGCACTCTCTGTAACTAATGCCTGGGCTGACTTCAATGTTAATTGGGCGTATTTTGGCATCAGCATTTTTATGCTTGTTGTCACATTAGTACTCTGGATTATGTATTTTCTGAACAGTTTCCGCCTTTACAGGCGAACCAGGAGCTTCTGGGCCTTTAACCCGGAAACTGATTCTATAATTGTCTTTTCTGTCTATGGAACAACCTATTCCATTCCAGTGATCCAAGCCCCTCAGGGCATTACATTCACAATCCTCAGTGGTACACTTTTGGTCGACGGCATAAAAATTGCAACAGCGGTGCGCATTGATGCACTGCCGCAATATGTCACTGTGGCTAAAGCTACTACGACCATTGTGTTCCACAGAGTTGGAAAGGCTGTGAATGAAAGGACCCAAACGGGATGGCTGTTCTTCGTTCGGTCGGGCTATGGTGACTACGCTGCTCATTCTACCGGAACAGGACAGATGACAGAAAGTGAAAAATTGCTTCATATAGCA >BtCoV92_M_QEH60466_1_2015_Singapore_Bat_Bat_coronavirus ------------------------------------------------------ATGACAGAATCTAATGCTACACTTCCCAAAGCGGAAGTGTTAGCTGCAGTTCGTGATTGGAACTTTACGCTATCGCTGTTCCTACTGTTTATAACTATACTACTCCAATGGGGATACCCTTCACGGTGTAAACCCCTTTGGGTAGTTAAAATGTGTATTCTGTGGCTTTTGTGGCCGCTGTCCATAGCTGCTGCTGTATTTGCAGCTGTT------TATCCTATAAACCAGGTGGCTTTTGGCTTTGCCATAGCTTTTGCCTGCATTTCAGGGCTAATGTGGCTTTGCTACTTTATTAGCTCCTTTAGATTGCTTTGTCGTACAGGTTCAGCTTGGTCTTTCATGCCTGAAACAGACATGCTGCTCAATGTACCACTACTTGGACGCACTGTAACGCGTCCTATACTTGCTGATTCACCAGCTATTCAGTTTCTGCTTGTGCGTGGTGAAATTCAGTTTGAAGGTTTCAAACTAGGCCGC---TGTGACCCTGGCGACATGCCTGATATTGTCACAGTTGCAAAACCAGCA---TCACTTCATTGGTATAAGAAGGCACTTACTAGAAATATAGGTGTCAAATCTGCAATCATTGTCTACATTAAATATAAAGTAGGCAATCATCGCGTACAGAATACTACTGAAGATGGT---------GAGCGTCTAGCTATGTTTGTTGCT >BtCoV_Rh_YN2012_Ra13591_M_QBP43295_1_2013_06_01_China_Unknown_Bat_coronavirus ATGAATATCTTTTGTTTGTTGTGTGTAATGGCATTAGTACCATACACATTTGCAGATTCTAGTACCAACAATTCGATTCCTGTGGATCAAGTTGTTGAACATCTCAGAAACTGGAATTTCAGTTGGAACATAATACTGACTGTGTTCTTGGTTGTACTTCAGTATGGCCAGTACAAGTACAGTGTTGTGCTCTATGTGCTGAAAATGCTTGTCCTCTGGCTTTTGTGGCCACTTGTGCTAGCGCTGTCAATCTTTGACGCTGTAGTTAGCTTCGGGGACAATTGGACGTATTTTGCTTTCAGCATCCTTATGGCTTGCATAACCTTCGTGCTGTGGATCATGTACTTTGCCAACAGCTTCAGGTTGTACCGTAGGACGAACAGTTTCTGGGCTTTTAACCCAGAGACAGATGCCATCATAACACTTTCTGTTCTTGGACGACAAGTTTCGATTCCAATCATTGTCGCCCCAACTGGCATTACGCTCACATGTTTAAATGGTACACTACTCGTGGAAGGCATTAAGGTTGCTACAGGTGTGCAGGTAAGTCAATTACCTACATACATCACAGTCGCCAAACCTACCACTACTATTGTGTACCAACGAGCAGGGCGGTCTTTGAACGCACGTTCAAACACAGGCTGGGCGTTTTATGTCAGATCTAAAAATGGCGACTATTCTGCTGTGACGAGCGGTGTCGAATCTATCACAGAAGAAGAGAAAGTGCTGCATTTAGTT >BtCoV_Rh_YN2012_Rs3376_M_QBP43262_1_2012_05_19_China_Unknown_Bat_coronavirus ---------------------------------------------------------ATGACTGATAACGGTACTATTTCTGTTGAGCAAGTGGTAGCTCACTTGCGAAACTGGAACTTCAGCTGGAATGTAATTCTCACCGTATTTCTCATTGTCCTGCAATATGGACATTATAAATACAGTGTTGTTCTTTACAGTCTGAAGATGATGATACTCTGGCTTTTGTGGCCACTGGTACTAGCATTGTCAATCTTTGACAGTTGGGCCAGTTTTGGTGTCAATTGGACGTTCTTTGCATTTAGCATCCTAATGTGCTGCATAACGTTTATACTGTGGGTGATGTATTTCGTCAACAGTTTTCGATTGTATCGCAGAACACAGACTTTCTGGGCTTTCAACCCAGAGACTGATGCCATCATGACGCTTTCTGTTCTCGGCCGACAAGTCTCGATTCCAGTAATAGTTGCCCCAACTGGCATTACGCTCACTGTTCTTAGTGGTACACTCCTTATGGAGGGCATTAAGGTTGCTACCGGTGTACAGGTAAATCAATTACCATCGTACATCACAGTCGCCAAGCCAACTACCACTATCATTTACCAGAGAGCTGGCCGCTCGTTGAACACACGTTCGCAGACGGGCTGGGCATTTTATGTCAGATCTAAAAATGGCGACTATTCTGCTGTGACGAGTCATTCTGATTCGGTTACAGATGAAGAGAAAGTGCTTCATTTAGTA >BtCoV_Rh_YN2012_Rs4125_M_QBP43273_1_2012_09_16_China_Unknown_Bat_coronavirus ---------------------------------------------------ATGTCTAATTCAACAAGCGGGACTATTCCCGTAGAACAGGTGGTAGAACACCTGCGAAACTGGAATTTCAGCTGGAATGTCATTCTCACTATATTTCTTATTGTCCTTCAGTATGGACAATACAAATATAGTGTTGTGCTTTACGGGCTGAAAATGCTGATCCTATGGCTCTTGTGGCCGCTTGTCCTGGCTTTGTCAATTTTTGACAGCTGGGCTAGTTTCGGCGTAAACTGGACGTTCTTTGCATTTAGCATCCTTATGTCCTGCTTAACGCTTATACTGTGGATGATGTATTTCATCAACAGTTTTCGCTTGTACCGCAGAACTCAGACCTTCTGGGCTTTCAACCCGGAAACTGATGCCATCATTACGCTTTCTGTCTTCGGCCGACAAGTTTCGATCCCGACAATAGTTGCCCCAACTGGCATCACGCTCACTGTTCTAAGTGGTACACTTCTTGTGGAGGGTATTAAGGTTGCTACAGGTGTGCAGGTAAGTCAATTACCTACGTACATCACAGTCGCCAAACCCAGTACCACAATTGTCTACCAAAGAGCAGGCCGTAGTTTGAACACTCGTTCCAACACAGGCTGGGCGTTCTATGTCAGATCGAAAAATGGCGACTACTCAGCTGTCGCGAGTCATTCTGATTCGTTGACAGAAGATGAGAAAGTGCTTCATTTAGTA >BtCoV_Rh_YN2012_Rs4259_M_QBP43284_1_2013_04_17_China_Unknown_Bat_coronavirus ---------------------------------------------------ATGTCTAATTCAACAAGCGGGACTATTCCCGTAGAACAGGTGGTAGAACACCTGCGAAACTGGAATTTCAGCTGGAATGTCATTCTCACTATATTTCTTATTGTCCTTCAGTATGGACAATACAAATATAGTGTTGTGCTTTACGGGCTGAAAATGCTGATCCTATGGCTCTTGTGGCCGCTTGTCCTGGCTTTGTCAATTTTTGACAGCTGGGCTAGTTTCGGCGTAAACTGGACGTTCTTTGCATTTAGCATCCTTATGTCCTGCATAACGCTTATACTGTGGATGATGTATTTCATCAACAGTTTTCGCTTGTACCGCAGAACTCAGACCTTCTGGGCTTTCAACCCGGAAACTGATGCCATCATTACGCTTTCTGTCTTCGGCCGACAAGTTTCGATCCCGACAATAGTTGCCCCAACTGGCATCACGCTCACTGTTCTAAGTGGTACACTTCTTGTGGAGGGTATTAAGGTTGCTACAGGTGTGCAGGTAAGTCAATTACCTACGTACATCACAGTCGCCAAACCCAGTACCACAATTGTCTACCAAAGAGCAGGCCGTAGTTTGAACACTCGTTCCAACACAGGCTGGGCGTTCTATGTCAGATCGAAAAATGGCGACTACTCAGCTGTCGCGAGTCATTCTGATTCGTTGACAGAAGATGAGAAAGTGCTTCATTTAGTA >CMR66_NA_AWV67058_1_2013_12_Cameroon_Bat_Bat_coronavirus ------------------------------------------------ATGTCGGGAGAGTGTAATAATAATACTGTGTCCCGTACTGAGGTTATAGCTGCATTAAAAGACTGGAACTTCGCAGTTTCAGTCTTATTGTTGTTTATAACCGTGCTATTGCAGTGGGGTTATCCCTCTCGCTGTAAACCCATATGGGTTATCAAGATGTTTATACTGTGGTTACTATGGCCGTTGTCCATAGCAGCCGCTGTTTTTGCAGCTATA------CATCCAATTAATTCGGTTTCTTTTGGGTTTGCTATAGCTTTTGCCTGTATATCTGGCATTATGTGGTTGAGCTATTTTATTAGCTCATTCCGCTTGCTGTGTAGGACGGGCTCTGCCTGGTCTTTTATGCCGGAAACTGATATGCTTATTAACATACCCCTCTTGGGGCGTACTGTAACTAGGCCTATCATTGCAGACTCACCTGCTGTTCAGTTTTTGATTATCAGGGGTGAGCTGAGGTTTGACGGTTTCACGCTAGGTCGT---TGTGACCCGAATGACATGCCTGACATTGTTACCATTGCTAGACCTAAT---TCACTGCACTGGTATAAGCGAGCACTTACTCGTAATATAGGTACTCGCTCAGCTATACTTGTTTATATTAAATACAAGGTTGGCAACCATCGTGTGCAGAACACCACAGAAGATGGT---------GATAGGTTAGCAATGTTTGCAGCT >CMR704_P12_M_YP_009824992_1_2013_12_Cameroon_Bat_Bat_coronavirus ------------------------------------------------------ATGTCCTCGAGTAATTCGACCTTCTCTAAGGAGGAGGTTTTTAAAGCCGTCAAGGATTGGAATTTTGCAGTTGCAATCCTTTTACTTTTCGTGACCATATTGCTGCAGTGGGGTTACCCTTCTCGCGTTAAGGCGATATGGGTCGTGAAAATGTTCATCTTGTGGTTGCTGTGGCCAGTGTCCATAGCTGCCTCAGTCTTTGCCGCTGTC------TACCCTATTAATAAGGTAGCCTTCGGCTTTGCTATAGCTTTTGCTTGCATTACTGCGCTTATGTGGCTCAGTTATTTTGTAAGCTCGCTCAGATTACTTTGCAGAACTGGTTCCTGGTGGGCATTTATGCCCGAGACCAATATGCTGCTTAATGTGCCTTTCATCGGGCGCACAGTAACCAGACCAATCTTGAATGACTCCGCTGCTTTGCAGTTTTTCATTCTCAGAGGCCAGGTTCAATTTGAAGGATTTGTGCTGGGGAAA---TGTGCCCCAACAGAAATGCCCGAAGTCGTCACAGTTGCCAAGGCAGGG---TCCTTGGTATGGTACAAGAAGGCTCTCACGCGAACTGTGGGCCCGAAGTCAGGTGTGGTTGTCTACATAAAATTTAAAGTAGGCAATCACAGAGTGCAAAATGCAAATGATGATGAC---------GGACAATTGGCCATGTTTTTGGCT >CMR705_P13_NA_AWV67074_1_2013_12_Cameroon_Bat_Bat_coronavirus ------------------------------------------------------ATGTCCTCGAGTAATTCGACCTTCTCTAAGGAGGAGGTTTTTAAAGCCGTCAAGGATTGGAATTTTGCAGTTGCAATCCTTTTACTTTTCGTGACCATATTGCTGCAGTGGGGTTACCCTTCTCGCGTTAAGGCGATATGGGTCGTGAAAATGTTCATCTTGTGGTTGCTGTGGCCAGTGTCCATAGCTGCCTCAGTCTTTGCCGCTGTC------TACCCTATTAATAAGGTAGCCTTCGGCTTTGCTATAGCTTTTGCTTGCATTACTGCGCTTATGTGGCTCAGTTATTTTGTAAGCTCGCTCAGATTACTTTGCAGAACTGGTTCCTGGTGGGCATTTATGCCCGAGACCAATATGCTGCTTAATGTGCCTTTCATCGGGCGCACAGTAACCAGACCAATCTTGAATGACTCCGCTGCTTTGCAGTTTTTCATTCTCAGAGGCCAGGTTCAATTTGAAGGATTTGTGCTGGGGAAA---TGTGCCCCAACAGAAATGCCCGAAGTCGTCACAGTTGCCAAGGCAGGG---TCCTTGGTATGGTACAAGAAGGCTCTCACGCGAACTGTGGGCCCGAAGTCAGGTGTGGTTGTCTACATAAAATTTAAAGTAGGCAATCACAGAGTGCAAAATGCAAATGATGATGAC---------GGACAATTGGCCATGTTTTTGGCT >JPDB144_M_ANA96045_1_2012_12_China_Bat_Bat_coronavirus ---------------------------------------------------------ATGTCGTCAAACGGTAGTCTTACCAAAGACGAGGTAGTAAATATTATTAAAGACTGGAATTTTTCATGGTCCATAATATTTTTACTTATTACTATCGTACTCCAATATGGTTATCCATCCAGGAGTATGACTGTCTACGTCTTTAAGATGTTCATATTATGGCTTTTATGGCCAGCTTCTATGGCACTTTCCATATTTAGTGCTATT------TATCCCATAAGTTTAGCTTCCCAGATTATATCTGGCATTTTAGCAGCTGCATGTGCTGGTATGTGGCTAGCATACTTTATTCAGAGTATACGGCTATTTATGCGCACTGGTTCTTGGTGGTCTTTTAATCCAGAATCTAATTGTCTGCTTAATGTCCCTATCGGTGGTACAACAGTTGTTAGACCATTGGTCGAAGACTCGACTAGTGTCACAGCTGTTGTCAACGATGGTCATCTTAAGATGGCTGGTATGCACTTTGGGCGT---TGTGATTACGATCGACTTCCTATGGAAATCACCGTAGCCAAGCCCTCT---GTGCTTATAGCTCTTAAGATGGTTAAACGCCAGTCGTATGGCACTAATTCTGGTGTTGCCATATTTCATAGGTATAAAGCCGGTAATTATAGATGGCCTACTATTATACAAGATGAA------------GAACTTGCATTGCTTAGGGCA >CMR900_NA_AWV67050_1_2013_12_Cameroon_Bat_Bat_coronavirus ------------------------------------------------------ATGTCATCGGATAATTCAACCTTCTCTAAGGAGGAGGTCTTTAAAGCCGTCAGGGATTGGAATTTTGCTGTTGCCATCCTTTTACTTTTCGTGACCATATTGCTGCAGTGGGGTTACCCTTCTCGCATCAAAGCGATATGGGTTGTGAAAATGTTCATTTTGTGGCTGTTATGGCCAGTTTCCATAGCTGCGTCAGTCTTTGCCGCTGTC------TACCCTATTAATAAGGTAGCCTTTGGCTTTGCTATAGCTTTTGCTTGCATTACTGCGCTCATGTGGCTCAGTTATTTTGTAAGCTCGCTCAGATTACTTTGCAGAACTGGTTCGTGGTGGGCATTTATGCCCGAGACCAATATGCTGCTTAATGTGCCTTTTATTGGGCGCACAGTAACCAGACCAATTTTGAATGACTCTGCTGCTTTGCAGTTTTTCGTTCTCAGAGGCCAGGTTCAGTTTGACGGGTTTATCCTGGGGAAA---TGTGCCCCGCAGGAAATGCCCGAAGTTGTCACAGTTGCTAAGGCTTCG---TCCTTGGTTTGGTACAAGAAGGCTCTCACACGAACGGTGGGCCCGAAGTCAGGTGTGGTTGTCTACATAAAATTTAAAGTAGGCAATCACAGAGTGCAAAATGCAAATGATGATGAC---------GGACAATTGGCCATGTTTTTGGCT >JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus ---------------------------------------------------------ATGGCTGACAACGGAACCATTTCTGTTGAGGAGCTTAAAAGACTCCTGGAACAATGGAACCTAGTAATAGGCTTCCTCTTCCTCGCCTGGATTATGTTATTACAATTTGCCTATTCTAATCGGAACAGGCTTTTGTACATAATAAAGCTTGTCTTCCTCTGGCTCTTGTGGCCAGTAACACTTGCTTGCTTTGTGCTTGCTGCTGTT------TACAGAATTAATTGGGTGACTGGCGGTATTGCGATTGCAATGGCTTGCATCGTAGGCTTGATGTGGCTTAGCTACTTCTTTGCTTCCTTCAGGCTGTTTGCTCGTACCCGCTCAATGTGGTCATTCAACCCAGAAACAAACATTCTTCTCAATGTGCCTCTTCGAGGGACAATTGTAACCAGACCGCTCATGGAAAGTGAACTTGTCATTGGCGCTGTGATCATTCGTGGTCACCTGCGAATGGCTGGACACTCCCTAGGGCGC---TGTGATATTAAGGACCTGCCAAAGGAGATCACTGTGGCTACATCACGA---ACGCTTTCTTATTACAAATTAGGAGCGTCGCAGCGTGTAGGCACTGATTCTGGTTTTGCTGCATACAACCGCTACCGTATTGGAAACTACAAATTAAACACAGACCACTCTGGTAGC------AACGACAATATTGCTTTGCTAGTACAG >Jiyuan_84_NA_ARI44811_1_2012_China_Bat_Bat_coronavirus ---------------------------------------------------------ATGGCTGAGAACGGAACCATTTCTGTTGAGGAGCTTAAAAGACTCCTGGAACAATGGAACCTAGTAATAGGCTTCCTTTTCCTCGCCTGGATTATGTTATTACAATTTGCCTATTCTAATCGGAACAGGCTTTTGTACATAATAAAGCTTGTCTTCCTCTGGCTCTTGTGGCCAGTAACACTTGCTTGCTTTGTGCTTGCTGCTGTT------TACAGAATTAATTGGGTGACTGGCGGTATTGCGATTGCAATGGCTTGCATCGTAGGCTTGATGTGGCTTAGCTACTTTGTTGCTTCCTTCAGGCTGTTTGCTCGTACCCGCTCAATGTGGTCATTCAACCCAGAAACAAACATTCTTCTCAATGTGCCTCTTCGAGGGACAATTGTAACCAGACCGCTCATGGAAAGTGAACTTGTCATTGGCGCTGTGATCATTCGTGGTCACCTGCGAATGGCTGGACACTCCCTAGGGCGC---TGTGATATTAAGGACCTGCCAAAGGAGATCACTGTGGCTACGTCACGA---ACGCTTTCTTATTACAAACTAGGAGCGTCGCAGCGTGTAGGCACTGATTCAGGTTTTGCTGCATACAACCGCTACCGTATTGGAAACTACAAATTAAACACAGACCACTCTGGTAGC------AACGACAATATTGCTTTGCTAGTACAG >PREDICT_PDF_2180_M_ARJ34232_1_2013_02_20_Uganda_Bat_Bat_coronavirus ---------------------------------------------------------ATGTCAAATATGACGCAGCTCACTGAGCAGCAGATTATTAGTATAATTAAAGATTGGAACTTTGCATGGTCTCTGATCTTTCTTTTAATTACTATCGTGCTACAATATGGTTACCCATCTCGTAGCATGACTGTCTATGTCTTTAAAATGTTTGTTTTATGGCTTTTATGGCCTTCATCAATGGCACTCTCAATTTTCAGTGCCGTT------TATCCAATTGACCTAGCTTCCCAGATTATTTCTGGCATAATAGCTGGTGTCTCTGCGCTCATGTGGATTTCCTACTTCGTGCAGAGCATTAGACTCTTTATGCGAACAGGCTCTTGGTGGTCATTCAATCCTGAAACTAATTGCCTTTTGAACGTTCCACTTGGTGGCACAACTGTAGTGCGTCCACTAGTCGAAGATTCCACTAGTGTTACTGCTGTTGTTGCCAATGGGTACCTCAAGATGGCTGGTATGCACTTTGGTGCG---TGTGACTACGATCGACTCCCTAGTGAGGTGACCGTGGCTAAACCCAAC---GTGCTTATCGCATTGAAAATGGTAAAGAGACAAAGCTATGGAACTAATTCTGGTGTTGCTATTTACCATAGATATAAGGCAGGTAATTACAGAAGTCCGCCCATAACGGCGGATAGT------------GAACTTGCATTGCTACGAGCA >Vs_CoV_1_M_BBJ36014_1_NA_Japan_Bat_Bat_coronavirus ------------------------------------------------------------ATGTCTAACTCTTCGCTCACAAATGAGCAGATAGTTTCTATCATAAAAGATTGGAACTTTGCATGGTCCATTATCTTTCTCTTAATAACTATAGTGCTACAATATGGCTACCCATCTCGTAGCATGACAGTGTATGTTTTCAAAATGTTTGTACTTTGGCTTCTTTGGCCTGCTTCAATGGCGCTGTCCATTTTCAGTGCAATC------TACCCAGTAGACTTGTCAACCCAGATCATCTCTGGCATAATAGCTTTCATCTCTGCATGCATGTGGATTTCCTACTTCGTGCAGAGTATCAGGCTGTTTATGCGGACAGGCTCTTGGTGGTCCTTCAACCCCGAAACTAATTGCCTCTTGAATGTTCCAATTGGCGGCACTACCGTTGTCAGACCCCTCGTTGAAGACTCAACAAGTGTGACAGCTGTTGTCACCAATGGCTACCTCAAGATCGCAGGGATGCACTTTGGCCAG---TGCGACTACCGCTCGCTTCCCAACGAAGTGACTGTCGCCAAACCCAAT---GTACTAATAGCTTTGAAAATGGTAAAGAGACAAGACTACGGAACAAACTCCGGTGTGGCTATTTACCACAGATACAAGGCTGGTAATTACAGACGTCCGGCAATTGTGCCAGACGCC------------GAACTTGCACTGCTGCGAGCG
>16BO133_M_ASO66812_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWIMLLQFAYSNRNRLLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGIAIAMACIVGLMWLSYFFASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSYYKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHSGS--NDNIALLVQ >Anlong_103_NA_ARI44801_1_2013_China_Bat_Bat_coronavirus -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSYYKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHAGS--NDNIALLVQ >Anlong_112_NA_ARI44806_1_2013_China_Bat_Bat_coronavirus -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSYYKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHAGS--NDNIALLVQ >Anlong_43_NA_ARI44791_1_2013_China_Bat_Bat_coronavirus ------------------MSGSNHTVPVGEVLEHLRNWSFAWNIILTVLIVMLQYGNFKYSKILYGIKMAVLWLLWPCVIALSVTNAWADFNVNWAYFGISIFMLVVTLVLWIMYFLNSFRLYRRTRSFWAFNPETDSIIVFSVYGTTYSIPVIQAPQGITFTILSGTLLVDGIKIATAVRIDALPQYVTVAKATTTIVFHRVGKAVNERTQTGWLFFVRSGYGDYAAHSTGTGQMTESEKLLHIA >Anlong_57_NA_ARI44796_1_2013_China_Bat_Bat_coronavirus ------------------MSGSNQTVPVGEVLEHLRNWSFAWNIILTVLIVMLQYGNFKYSKILYGIKMAVLWLLWPCVIALSVTNAWADFNVNWAYFGISIFMLVVTLVLWIMYFLNSFRLYRRTRSFWAFNPETDSIIVFSVYGTTYSIPVIQAPQGITFTILSGTLLVDGIKIATAVRIDALPQYVTVAKATTTIVFHRVGKAVNERTQTGWLFFVRSGYGDYAAHSTGTGQMTESEKLLHIA >BtCoV92_M_QEH60466_1_2015_Singapore_Bat_Bat_coronavirus ------------------MTESNATLPKAEVLAAVRDWNFTLSLFLLFITILLQWGYPSRCKPLWVVKMCILWLLWPLSIAAAVFAAV--YPINQVAFGFAIAFACISGLMWLCYFISSFRLLCRTGSAWSFMPETDMLLNVPLLGRTVTRPILADSPAIQFLLVRGEIQFEGFKLGR-CDPGDMPDIVTVAKPA-SLHWYKKALTRNIGVKSAIIVYIKYKVGNHRVQNTTEDG---ERLAMFVA >BtCoV_Rh_YN2012_Ra13591_M_QBP43295_1_2013_06_01_China_Unknown_Bat_coronavirus MNIFCLLCVMALVPYTFADSSTNNSIPVDQVVEHLRNWNFSWNIILTVFLVVLQYGQYKYSVVLYVLKMLVLWLLWPLVLALSIFDAVVSFGDNWTYFAFSILMACITFVLWIMYFANSFRLYRRTNSFWAFNPETDAIITLSVLGRQVSIPIIVAPTGITLTCLNGTLLVEGIKVATGVQVSQLPTYITVAKPTTTIVYQRAGRSLNARSNTGWAFYVRSKNGDYSAVTSGVESITEEEKVLHLV >BtCoV_Rh_YN2012_Rs3376_M_QBP43262_1_2012_05_19_China_Unknown_Bat_coronavirus -------------------MTDNGTISVEQVVAHLRNWNFSWNVILTVFLIVLQYGHYKYSVVLYSLKMMILWLLWPLVLALSIFDSWASFGVNWTFFAFSILMCCITFILWVMYFVNSFRLYRRTQTFWAFNPETDAIMTLSVLGRQVSIPVIVAPTGITLTVLSGTLLMEGIKVATGVQVNQLPSYITVAKPTTTIIYQRAGRSLNTRSQTGWAFYVRSKNGDYSAVTSHSDSVTDEEKVLHLV >BtCoV_Rh_YN2012_Rs4125_M_QBP43273_1_2012_09_16_China_Unknown_Bat_coronavirus -----------------MSNSTSGTIPVEQVVEHLRNWNFSWNVILTIFLIVLQYGQYKYSVVLYGLKMLILWLLWPLVLALSIFDSWASFGVNWTFFAFSILMSCLTLILWMMYFINSFRLYRRTQTFWAFNPETDAIITLSVFGRQVSIPTIVAPTGITLTVLSGTLLVEGIKVATGVQVSQLPTYITVAKPSTTIVYQRAGRSLNTRSNTGWAFYVRSKNGDYSAVASHSDSLTEDEKVLHLV >BtCoV_Rh_YN2012_Rs4259_M_QBP43284_1_2013_04_17_China_Unknown_Bat_coronavirus -----------------MSNSTSGTIPVEQVVEHLRNWNFSWNVILTIFLIVLQYGQYKYSVVLYGLKMLILWLLWPLVLALSIFDSWASFGVNWTFFAFSILMSCITLILWMMYFINSFRLYRRTQTFWAFNPETDAIITLSVFGRQVSIPTIVAPTGITLTVLSGTLLVEGIKVATGVQVSQLPTYITVAKPSTTIVYQRAGRSLNTRSNTGWAFYVRSKNGDYSAVASHSDSLTEDEKVLHLV >CMR66_NA_AWV67058_1_2013_12_Cameroon_Bat_Bat_coronavirus ----------------MSGECNNNTVSRTEVIAALKDWNFAVSVLLLFITVLLQWGYPSRCKPIWVIKMFILWLLWPLSIAAAVFAAI--HPINSVSFGFAIAFACISGIMWLSYFISSFRLLCRTGSAWSFMPETDMLINIPLLGRTVTRPIIADSPAVQFLIIRGELRFDGFTLGR-CDPNDMPDIVTIARPN-SLHWYKRALTRNIGTRSAILVYIKYKVGNHRVQNTTEDG---DRLAMFAA >CMR704_P12_M_YP_009824992_1_2013_12_Cameroon_Bat_Bat_coronavirus ------------------MSSSNSTFSKEEVFKAVKDWNFAVAILLLFVTILLQWGYPSRVKAIWVVKMFILWLLWPVSIAASVFAAV--YPINKVAFGFAIAFACITALMWLSYFVSSLRLLCRTGSWWAFMPETNMLLNVPFIGRTVTRPILNDSAALQFFILRGQVQFEGFVLGK-CAPTEMPEVVTVAKAG-SLVWYKKALTRTVGPKSGVVVYIKFKVGNHRVQNANDDD---GQLAMFLA >CMR705_P13_NA_AWV67074_1_2013_12_Cameroon_Bat_Bat_coronavirus ------------------MSSSNSTFSKEEVFKAVKDWNFAVAILLLFVTILLQWGYPSRVKAIWVVKMFILWLLWPVSIAASVFAAV--YPINKVAFGFAIAFACITALMWLSYFVSSLRLLCRTGSWWAFMPETNMLLNVPFIGRTVTRPILNDSAALQFFILRGQVQFEGFVLGK-CAPTEMPEVVTVAKAG-SLVWYKKALTRTVGPKSGVVVYIKFKVGNHRVQNANDDD---GQLAMFLA >JPDB144_M_ANA96045_1_2012_12_China_Bat_Bat_coronavirus -------------------MSSNGSLTKDEVVNIIKDWNFSWSIIFLLITIVLQYGYPSRSMTVYVFKMFILWLLWPASMALSIFSAI--YPISLASQIISGILAAACAGMWLAYFIQSIRLFMRTGSWWSFNPESNCLLNVPIGGTTVVRPLVEDSTSVTAVVNDGHLKMAGMHFGR-CDYDRLPMEITVAKPS-VLIALKMVKRQSYGTNSGVAIFHRYKAGNYRWPTIIQDE----ELALLRA >CMR900_NA_AWV67050_1_2013_12_Cameroon_Bat_Bat_coronavirus ------------------MSSDNSTFSKEEVFKAVRDWNFAVAILLLFVTILLQWGYPSRIKAIWVVKMFILWLLWPVSIAASVFAAV--YPINKVAFGFAIAFACITALMWLSYFVSSLRLLCRTGSWWAFMPETNMLLNVPFIGRTVTRPILNDSAALQFFVLRGQVQFDGFILGK-CAPQEMPEVVTVAKAS-SLVWYKKALTRTVGPKSGVVVYIKFKVGNHRVQNANDDD---GQLAMFLA >JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus -------------------MADNGTISVEELKRLLEQWNLVIGFLFLAWIMLLQFAYSNRNRLLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGIAIAMACIVGLMWLSYFFASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSYYKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHSGS--NDNIALLVQ >Jiyuan_84_NA_ARI44811_1_2012_China_Bat_Bat_coronavirus -------------------MAENGTISVEELKRLLEQWNLVIGFLFLAWIMLLQFAYSNRNRLLYIIKLVFLWLLWPVTLACFVLAAV--YRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGR-CDIKDLPKEITVATSR-TLSYYKLGASQRVGTDSGFAAYNRYRIGNYKLNTDHSGS--NDNIALLVQ >PREDICT_PDF_2180_M_ARJ34232_1_2013_02_20_Uganda_Bat_Bat_coronavirus -------------------MSNMTQLTEQQIISIIKDWNFAWSLIFLLITIVLQYGYPSRSMTVYVFKMFVLWLLWPSSMALSIFSAV--YPIDLASQIISGIIAGVSALMWISYFVQSIRLFMRTGSWWSFNPETNCLLNVPLGGTTVVRPLVEDSTSVTAVVANGYLKMAGMHFGA-CDYDRLPSEVTVAKPN-VLIALKMVKRQSYGTNSGVAIYHRYKAGNYRSPPITADS----ELALLRA >Vs_CoV_1_M_BBJ36014_1_NA_Japan_Bat_Bat_coronavirus --------------------MSNSSLTNEQIVSIIKDWNFAWSIIFLLITIVLQYGYPSRSMTVYVFKMFVLWLLWPASMALSIFSAI--YPVDLSTQIISGIIAFISACMWISYFVQSIRLFMRTGSWWSFNPETNCLLNVPIGGTTVVRPLVEDSTSVTAVVTNGYLKIAGMHFGQ-CDYRSLPNEVTVAKPN-VLIALKMVKRQDYGTNSGVAIYHRYKAGNYRRPAIVPDA----ELALLRA
Reading sequence file /data//pss_subsets/JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus.result/original_alignment/codeml/fasta/JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus.result.1
Found 19 sequences of length 738
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 45.6%
Found 541 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0% 33.6% 60.3% 80.2% 93.2% 99.4%100.0%
Using a window size of 80 with k as 59
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 356 polymorphic sites
**p-Value(s)**
----------
NSS: 1.00e-03 (1000 permutations)
Max Chi^2: 1.22e-01 (1000 permutations)
PHI (Permutation): 2.68e-01 (1000 permutations)
PHI (Normal): 2.66e-01
#NEXUS
[ID: 2960553102]
begin taxa;
dimensions ntax=19;
taxlabels
16BO133_M_ASO66812_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus
BtCoV_Rh_YN2012_Rs4259_M_QBP43284_1_2013_04_17_China_Unknown_Bat_coronavirus
CMR66_NA_AWV67058_1_2013_12_Cameroon_Bat_Bat_coronavirus
CMR704_P12_M_YP_009824992_1_2013_12_Cameroon_Bat_Bat_coronavirus
CMR705_P13_NA_AWV67074_1_2013_12_Cameroon_Bat_Bat_coronavirus
JPDB144_M_ANA96045_1_2012_12_China_Bat_Bat_coronavirus
CMR900_NA_AWV67050_1_2013_12_Cameroon_Bat_Bat_coronavirus
JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus
Jiyuan_84_NA_ARI44811_1_2012_China_Bat_Bat_coronavirus
PREDICT_PDF_2180_M_ARJ34232_1_2013_02_20_Uganda_Bat_Bat_coronavirus
Vs_CoV_1_M_BBJ36014_1_NA_Japan_Bat_Bat_coronavirus
Anlong_103_NA_ARI44801_1_2013_China_Bat_Bat_coronavirus
Anlong_112_NA_ARI44806_1_2013_China_Bat_Bat_coronavirus
Anlong_43_NA_ARI44791_1_2013_China_Bat_Bat_coronavirus
Anlong_57_NA_ARI44796_1_2013_China_Bat_Bat_coronavirus
BtCoV92_M_QEH60466_1_2015_Singapore_Bat_Bat_coronavirus
BtCoV_Rh_YN2012_Ra13591_M_QBP43295_1_2013_06_01_China_Unknown_Bat_coronavirus
BtCoV_Rh_YN2012_Rs3376_M_QBP43262_1_2012_05_19_China_Unknown_Bat_coronavirus
BtCoV_Rh_YN2012_Rs4125_M_QBP43273_1_2012_09_16_China_Unknown_Bat_coronavirus
;
end;
begin trees;
translate
1 16BO133_M_ASO66812_1_2016_04_17_South_Korea_Unknown_Bat_coronavirus,
2 BtCoV_Rh_YN2012_Rs4259_M_QBP43284_1_2013_04_17_China_Unknown_Bat_coronavirus,
3 CMR66_NA_AWV67058_1_2013_12_Cameroon_Bat_Bat_coronavirus,
4 CMR704_P12_M_YP_009824992_1_2013_12_Cameroon_Bat_Bat_coronavirus,
5 CMR705_P13_NA_AWV67074_1_2013_12_Cameroon_Bat_Bat_coronavirus,
6 JPDB144_M_ANA96045_1_2012_12_China_Bat_Bat_coronavirus,
7 CMR900_NA_AWV67050_1_2013_12_Cameroon_Bat_Bat_coronavirus,
8 JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus,
9 Jiyuan_84_NA_ARI44811_1_2012_China_Bat_Bat_coronavirus,
10 PREDICT_PDF_2180_M_ARJ34232_1_2013_02_20_Uganda_Bat_Bat_coronavirus,
11 Vs_CoV_1_M_BBJ36014_1_NA_Japan_Bat_Bat_coronavirus,
12 Anlong_103_NA_ARI44801_1_2013_China_Bat_Bat_coronavirus,
13 Anlong_112_NA_ARI44806_1_2013_China_Bat_Bat_coronavirus,
14 Anlong_43_NA_ARI44791_1_2013_China_Bat_Bat_coronavirus,
15 Anlong_57_NA_ARI44796_1_2013_China_Bat_Bat_coronavirus,
16 BtCoV92_M_QEH60466_1_2015_Singapore_Bat_Bat_coronavirus,
17 BtCoV_Rh_YN2012_Ra13591_M_QBP43295_1_2013_06_01_China_Unknown_Bat_coronavirus,
18 BtCoV_Rh_YN2012_Rs3376_M_QBP43262_1_2012_05_19_China_Unknown_Bat_coronavirus,
19 BtCoV_Rh_YN2012_Rs4125_M_QBP43273_1_2012_09_16_China_Unknown_Bat_coronavirus
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:8.455514e-03,8:6.050070e-03,((((((((2:1.691704e-03,19:3.761701e-03)1.000:1.386409e-01,18:1.644036e-01)1.000:1.899869e-01,17:1.522175e-01)0.996:5.211996e-01,(14:5.736752e-03,15:6.213228e-03)1.000:6.382573e-01)1.000:2.492801e+00,(6:4.955579e-01,(10:1.795857e-01,11:2.653410e-01)0.551:1.363593e-01)1.000:1.077204e+00)0.735:3.644752e-01,((3:4.584498e-01,16:3.314396e-01)1.000:3.298656e-01,((4:1.630362e-03,5:1.618275e-03)0.997:5.870857e-02,7:5.352248e-02)0.998:3.415349e-01)1.000:8.203133e-01)1.000:1.478744e+00,(12:1.573675e-03,13:1.671805e-03)0.918:2.951156e-02)0.826:3.849483e-02,9:1.031779e-02)0.794:4.475940e-03);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:8.455514e-03,8:6.050070e-03,((((((((2:1.691704e-03,19:3.761701e-03):1.386409e-01,18:1.644036e-01):1.899869e-01,17:1.522175e-01):5.211996e-01,(14:5.736752e-03,15:6.213228e-03):6.382573e-01):2.492801e+00,(6:4.955579e-01,(10:1.795857e-01,11:2.653410e-01):1.363593e-01):1.077204e+00):3.644752e-01,((3:4.584498e-01,16:3.314396e-01):3.298656e-01,((4:1.630362e-03,5:1.618275e-03):5.870857e-02,7:5.352248e-02):3.415349e-01):8.203133e-01):1.478744e+00,(12:1.573675e-03,13:1.671805e-03):2.951156e-02):3.849483e-02,9:1.031779e-02):4.475940e-03);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -6882.91 -6906.40
2 -6884.11 -6905.48
--------------------------------------
TOTAL -6883.34 -6906.04
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 10.965327 1.459421 8.851227 13.502200 10.863880 1018.08 1051.88 1.000
r(A<->C){all} 0.147551 0.000292 0.113332 0.180116 0.147638 906.82 912.58 1.000
r(A<->G){all} 0.248913 0.000401 0.213136 0.290718 0.248918 907.80 989.36 1.000
r(A<->T){all} 0.111583 0.000181 0.082532 0.134608 0.111264 814.10 974.59 1.000
r(C<->G){all} 0.108698 0.000236 0.080007 0.139366 0.107996 938.55 940.11 1.000
r(C<->T){all} 0.304697 0.000452 0.259652 0.343440 0.304539 1010.79 1080.06 1.000
r(G<->T){all} 0.078557 0.000135 0.056048 0.101163 0.077937 918.18 1148.99 1.000
pi(A){all} 0.252837 0.000084 0.233630 0.269715 0.252680 915.20 1104.96 1.000
pi(C){all} 0.224048 0.000070 0.207925 0.240550 0.224080 1056.10 1119.98 1.000
pi(G){all} 0.218193 0.000085 0.200090 0.235390 0.218098 1025.58 1052.51 1.000
pi(T){all} 0.304921 0.000101 0.283051 0.322434 0.304976 1017.03 1052.91 1.000
alpha{1,2} 0.431969 0.001736 0.360063 0.518188 0.428836 1030.14 1123.97 1.000
alpha{3} 4.130119 1.322120 2.121654 6.269587 3.989915 1425.21 1436.81 1.001
pinvar{all} 0.025931 0.000157 0.004013 0.051202 0.024625 1425.00 1463.00 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/JTMC15_M_ANA96031_1_2013_08_China_Bat_Bat_coronavirus.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 19 ls = 218
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 5 5 5 7 7 11 | Ser TCT 4 2 2 4 4 3 | Tyr TAT 2 2 2 7 8 3 | Cys TGT 1 2 2 1 1 4
TTC 6 6 6 7 7 3 | TCC 2 3 3 1 1 2 | TAC 7 7 7 4 3 3 | TGC 2 1 1 0 0 2
Leu TTA 5 3 3 4 4 1 | TCA 4 4 4 0 0 5 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 4 5 5 2 2 2 | TCG 1 1 1 1 1 1 | TAG 0 0 0 0 0 0 | Trp TGG 7 7 7 9 9 8
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 10 9 9 5 5 10 | Pro CCT 1 2 2 2 2 6 | His CAT 0 0 0 4 3 2 | Arg CGT 4 4 4 1 1 5
CTC 7 5 5 6 6 2 | CCC 0 0 0 1 1 2 | CAC 3 3 3 1 1 0 | CGC 3 3 3 2 2 3
CTA 2 5 5 0 0 7 | CCA 3 2 2 1 1 3 | Gln CAA 2 2 2 4 5 1 | CGA 3 3 3 1 1 0
CTG 4 4 4 5 5 6 | CCG 1 1 1 2 2 1 | CAG 2 2 2 2 2 4 | CGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 12 13 13 10 10 8 | Thr ACT 3 4 4 6 6 5 | Asn AAT 5 4 4 4 5 5 | Ser AGT 1 1 1 4 4 0
ATC 3 2 2 4 4 1 | ACC 3 2 2 5 5 0 | AAC 7 8 8 6 5 2 | AGC 2 2 2 3 3 1
ATA 3 3 3 6 6 7 | ACA 5 5 5 7 7 4 | Lys AAA 3 4 4 4 5 8 | Arg AGA 3 3 3 1 1 2
Met ATG 6 6 6 4 4 6 | ACG 1 1 1 1 1 2 | AAG 3 2 2 3 2 2 | AGG 2 2 2 3 3 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 2 4 4 6 6 5 | Ala GCT 13 12 12 6 6 13 | Asp GAT 2 1 1 2 2 4 | Gly GGT 4 5 5 2 2 5
GTC 2 1 1 8 8 3 | GCC 2 3 3 4 4 2 | GAC 2 3 3 2 2 3 | GGC 5 3 3 6 6 4
GTA 6 5 5 2 2 6 | GCA 2 3 3 4 4 6 | Glu GAA 4 4 4 5 5 6 | GGA 4 3 3 5 5 2
GTG 5 6 6 7 7 3 | GCG 1 1 1 1 1 1 | GAG 4 4 4 0 0 0 | GGG 2 4 4 2 2 1
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 5 8 5 5 11 12 | Ser TCT 5 5 2 2 5 2 | Tyr TAT 5 6 4 4 4 1 | Cys TGT 1 0 0 0 5 1
TTC 7 5 8 8 3 6 | TCC 0 0 2 2 2 4 | TAC 6 4 6 6 1 4 | TGC 1 2 1 1 0 2
Leu TTA 3 2 3 2 4 2 | TCA 2 1 3 3 5 2 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 4 5 4 4 8 8 | TCG 2 5 3 3 1 3 | TAG 0 0 0 0 0 0 | Trp TGG 8 9 9 9 8 9
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 7 6 10 10 3 5 | Pro CCT 3 0 1 1 4 3 | His CAT 2 3 2 2 2 0 | Arg CGT 2 1 2 2 5 0
CTC 5 6 3 3 1 4 | CCC 0 0 2 2 3 2 | CAC 0 1 1 1 1 1 | CGC 0 2 2 2 3 2
CTA 2 2 2 2 3 0 | CCA 4 6 1 1 1 3 | Gln CAA 4 4 4 4 0 3 | CGA 2 3 2 2 1 1
CTG 5 4 5 5 4 4 | CCG 0 0 3 3 3 1 | CAG 3 4 4 4 3 3 | CGG 1 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 6 7 7 7 9 3 | Thr ACT 3 8 7 7 7 3 | Asn AAT 5 4 3 3 7 9 | Ser AGT 5 6 7 7 0 2
ATC 6 5 7 7 3 4 | ACC 3 2 1 1 3 4 | AAC 8 6 6 6 4 0 | AGC 3 2 4 4 2 1
ATA 4 4 3 4 11 5 | ACA 8 4 7 7 1 3 | Lys AAA 4 3 5 5 3 5 | Arg AGA 2 3 3 3 1 5
Met ATG 3 6 4 4 6 6 | ACG 4 6 5 5 2 1 | AAG 2 3 1 1 3 8 | AGG 2 0 0 0 5 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 8 7 5 5 9 6 | Ala GCT 6 5 4 4 9 9 | Asp GAT 2 3 2 2 2 3 | Gly GGT 2 3 2 2 6 3
GTC 5 6 8 8 1 7 | GCC 4 3 3 3 3 7 | GAC 3 2 2 2 6 2 | GGC 5 6 6 6 3 4
GTA 3 8 5 5 1 5 | GCA 2 3 2 2 8 5 | Glu GAA 3 0 3 3 2 3 | GGA 1 1 1 1 0 1
GTG 11 4 5 5 3 8 | GCG 2 0 2 2 0 2 | GAG 2 4 2 2 2 3 | GGG 2 0 2 2 2 3
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 12 9 14 5 5 6 | Ser TCT 2 7 3 5 4 6 | Tyr TAT 1 6 1 2 2 5 | Cys TGT 1 3 1 1 1 1
TTC 6 1 4 6 5 3 | TCC 4 4 2 2 2 3 | TAC 4 3 4 7 7 6 | TGC 2 0 2 2 2 1
Leu TTA 2 5 3 4 3 3 | TCA 2 2 3 3 4 5 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 8 2 7 4 4 3 | TCG 3 3 4 1 1 0 | TAG 0 0 0 0 0 0 | Trp TGG 9 8 9 7 7 7
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 5 11 4 10 11 6 | Pro CCT 3 3 3 1 1 3 | His CAT 0 2 0 0 0 1 | Arg CGT 0 1 0 4 4 2
CTC 4 1 5 7 6 6 | CCC 2 2 2 0 0 2 | CAC 1 1 1 3 3 1 | CGC 2 2 2 3 3 0
CTA 0 2 0 3 4 4 | CCA 3 4 2 3 3 4 | Gln CAA 3 2 2 2 2 2 | CGA 1 1 1 3 3 3
CTG 4 1 4 4 4 1 | CCG 1 0 2 1 1 1 | CAG 3 3 5 2 2 5 | CGG 0 1 0 1 1 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 3 8 5 12 12 11 | Thr ACT 3 6 2 3 3 8 | Asn AAT 9 7 9 4 4 6 | Ser AGT 2 6 1 1 1 6
ATC 4 3 3 3 3 3 | ACC 4 2 4 3 3 1 | AAC 0 2 0 8 8 3 | AGC 1 0 1 2 2 3
ATA 5 10 5 3 3 4 | ACA 3 3 3 5 4 2 | Lys AAA 5 4 6 3 3 4 | Arg AGA 5 2 5 3 3 4
Met ATG 6 9 6 6 6 9 | ACG 1 0 1 1 2 2 | AAG 8 4 6 3 3 3 | AGG 0 3 1 2 2 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 6 5 9 2 3 7 | Ala GCT 9 8 12 12 12 6 | Asp GAT 3 4 4 2 2 4 | Gly GGT 3 10 3 4 4 7
GTC 7 6 6 2 2 4 | GCC 7 3 6 2 2 2 | GAC 2 3 3 3 2 2 | GGC 4 2 4 5 5 3
GTA 5 4 4 6 6 2 | GCA 5 6 2 2 2 6 | Glu GAA 3 5 2 4 4 3 | GGA 1 0 0 4 4 1
GTG 8 1 6 5 5 6 | GCG 2 0 3 2 2 3 | GAG 3 1 3 3 4 2 | GGG 3 1 3 2 2 1
--------------------------------------------------------------------------------------------------------------------------------------
------------------------------------------------------
Phe TTT 5 | Ser TCT 7 | Tyr TAT 2 | Cys TGT 0
TTC 5 | TCC 5 | TAC 9 | TGC 3
Leu TTA 1 | TCA 3 | *** TAA 0 | *** TGA 0
TTG 3 | TCG 2 | TAG 0 | Trp TGG 7
------------------------------------------------------
Leu CTT 5 | Pro CCT 1 | His CAT 0 | Arg CGT 2
CTC 5 | CCC 4 | CAC 2 | CGC 1
CTA 2 | CCA 4 | Gln CAA 2 | CGA 1
CTG 4 | CCG 1 | CAG 4 | CGG 1
------------------------------------------------------
Ile ATT 6 | Thr ACT 4 | Asn AAT 6 | Ser AGT 3
ATC 8 | ACC 3 | AAC 5 | AGC 1
ATA 7 | ACA 6 | Lys AAA 4 | Arg AGA 4
Met ATG 8 | ACG 0 | AAG 3 | AGG 1
------------------------------------------------------
Val GTT 6 | Ala GCT 6 | Asp GAT 1 | Gly GGT 2
GTC 3 | GCC 2 | GAC 5 | GGC 7
GTA 4 | GCA 6 | Glu GAA 4 | GGA 1
GTG 7 | GCG 2 | GAG 1 | GGG 1
------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C1
position 1: T:0.22936 C:0.21101 A:0.28440 G:0.27523
position 2: T:0.37615 C:0.21101 A:0.21101 G:0.20183
position 3: T:0.31651 C:0.25688 A:0.22477 G:0.20183
Average T:0.30734 C:0.22630 A:0.24006 G:0.22630
#2: C2
position 1: T:0.22018 C:0.21101 A:0.28440 G:0.28440
position 2: T:0.37615 C:0.21101 A:0.21101 G:0.20183
position 3: T:0.32110 C:0.23853 A:0.22477 G:0.21560
Average T:0.30581 C:0.22018 A:0.24006 G:0.23394
#3: C3
position 1: T:0.22018 C:0.21101 A:0.28440 G:0.28440
position 2: T:0.37615 C:0.21101 A:0.21101 G:0.20183
position 3: T:0.32110 C:0.23853 A:0.22477 G:0.21560
Average T:0.30581 C:0.22018 A:0.24006 G:0.23394
#4: C4
position 1: T:0.21560 C:0.17431 A:0.32569 G:0.28440
position 2: T:0.38073 C:0.21101 A:0.22018 G:0.18807
position 3: T:0.32569 C:0.27523 A:0.20183 G:0.19725
Average T:0.30734 C:0.22018 A:0.24924 G:0.22324
#5: C5
position 1: T:0.21560 C:0.17431 A:0.32569 G:0.28440
position 2: T:0.38073 C:0.21101 A:0.22018 G:0.18807
position 3: T:0.33028 C:0.26606 A:0.21101 G:0.19266
Average T:0.30887 C:0.21713 A:0.25229 G:0.22171
#6: C6
position 1: T:0.22018 C:0.24312 A:0.24312 G:0.29358
position 2: T:0.37156 C:0.25688 A:0.19725 G:0.17431
position 3: T:0.40826 C:0.15138 A:0.26606 G:0.17431
Average T:0.33333 C:0.21713 A:0.23547 G:0.21407
#7: C7
position 1: T:0.22477 C:0.18349 A:0.31193 G:0.27982
position 2: T:0.38532 C:0.22018 A:0.22477 G:0.16972
position 3: T:0.30734 C:0.25688 A:0.20183 G:0.23394
Average T:0.30581 C:0.22018 A:0.24618 G:0.22783
#8: C8
position 1: T:0.23853 C:0.19266 A:0.31651 G:0.25229
position 2: T:0.38991 C:0.22018 A:0.21560 G:0.17431
position 3: T:0.33028 C:0.23853 A:0.20183 G:0.22936
Average T:0.31957 C:0.21713 A:0.24465 G:0.21865
#9: C9
position 1: T:0.22936 C:0.20183 A:0.32110 G:0.24771
position 2: T:0.38532 C:0.22018 A:0.20642 G:0.18807
position 3: T:0.28899 C:0.28440 A:0.20183 G:0.22477
Average T:0.30122 C:0.23547 A:0.24312 G:0.22018
#10: C10
position 1: T:0.22477 C:0.20183 A:0.32569 G:0.24771
position 2: T:0.38532 C:0.22018 A:0.20642 G:0.18807
position 3: T:0.28899 C:0.28440 A:0.20183 G:0.22477
Average T:0.29969 C:0.23547 A:0.24465 G:0.22018
#11: C11
position 1: T:0.26147 C:0.16972 A:0.30734 G:0.26147
position 2: T:0.36697 C:0.26147 A:0.18349 G:0.18807
position 3: T:0.40367 C:0.17890 A:0.18807 G:0.22936
Average T:0.34404 C:0.20336 A:0.22630 G:0.22630
#12: C12
position 1: T:0.25688 C:0.14679 A:0.27064 G:0.32569
position 2: T:0.38991 C:0.24771 A:0.20642 G:0.15596
position 3: T:0.28440 C:0.24771 A:0.19725 G:0.27064
Average T:0.31040 C:0.21407 A:0.22477 G:0.25076
#13: C13
position 1: T:0.25688 C:0.14679 A:0.27064 G:0.32569
position 2: T:0.38991 C:0.24771 A:0.20642 G:0.15596
position 3: T:0.28440 C:0.24771 A:0.19725 G:0.27064
Average T:0.31040 C:0.21407 A:0.22477 G:0.25076
#14: C14
position 1: T:0.24312 C:0.16972 A:0.31651 G:0.27064
position 2: T:0.35780 C:0.24312 A:0.21560 G:0.18349
position 3: T:0.44037 C:0.16055 A:0.22936 G:0.16972
Average T:0.34709 C:0.19113 A:0.25382 G:0.20795
#15: C15
position 1: T:0.26147 C:0.15138 A:0.26606 G:0.32110
position 2: T:0.38991 C:0.24771 A:0.21101 G:0.15138
position 3: T:0.32569 C:0.22477 A:0.17431 G:0.27523
Average T:0.32569 C:0.20795 A:0.21713 G:0.24924
#16: C16
position 1: T:0.22477 C:0.21560 A:0.28440 G:0.27523
position 2: T:0.37615 C:0.21101 A:0.21101 G:0.20183
position 3: T:0.31193 C:0.26606 A:0.22018 G:0.20183
Average T:0.30428 C:0.23089 A:0.23853 G:0.22630
#17: C17
position 1: T:0.21560 C:0.22018 A:0.28440 G:0.27982
position 2: T:0.37615 C:0.21101 A:0.21101 G:0.20183
position 3: T:0.31651 C:0.25229 A:0.22018 G:0.21101
Average T:0.30275 C:0.22783 A:0.23853 G:0.23089
#18: C18
position 1: T:0.22477 C:0.18807 A:0.31651 G:0.27064
position 2: T:0.35780 C:0.24771 A:0.21560 G:0.17890
position 3: T:0.38991 C:0.19725 A:0.21560 G:0.19725
Average T:0.32416 C:0.21101 A:0.24924 G:0.21560
#19: C19
position 1: T:0.23853 C:0.17890 A:0.31651 G:0.26606
position 2: T:0.36239 C:0.25688 A:0.22018 G:0.16055
position 3: T:0.25688 C:0.31193 A:0.22477 G:0.20642
Average T:0.28593 C:0.24924 A:0.25382 G:0.21101
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 142 | Ser S TCT 74 | Tyr Y TAT 67 | Cys C TGT 26
TTC 102 | TCC 44 | TAC 98 | TGC 25
Leu L TTA 57 | TCA 55 | *** * TAA 0 | *** * TGA 0
TTG 84 | TCG 37 | TAG 0 | Trp W TGG 153
------------------------------------------------------------------------------
Leu L CTT 141 | Pro P CCT 42 | His H CAT 23 | Arg R CGT 44
CTC 87 | CCC 25 | CAC 28 | CGC 40
CTA 45 | CCA 51 | Gln Q CAA 50 | CGA 35
CTG 77 | CCG 25 | CAG 59 | CGG 11
------------------------------------------------------------------------------
Ile I ATT 162 | Thr T ACT 92 | Asn N AAT 103 | Ser S AGT 58
ATC 75 | ACC 51 | AAC 92 | AGC 39
ATA 96 | ACA 89 | Lys K AAA 82 | Arg R AGA 56
Met M ATG 111 | ACG 37 | AAG 62 | AGG 28
------------------------------------------------------------------------------
Val V GTT 105 | Ala A GCT 164 | Asp D GAT 46 | Gly G GGT 74
GTC 88 | GCC 65 | GAC 52 | GGC 87
GTA 84 | GCA 73 | Glu E GAA 67 | GGA 38
GTG 108 | GCG 28 | GAG 44 | GGG 39
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.23274 C:0.18904 A:0.29768 G:0.28054
position 2: T:0.37760 C:0.22984 A:0.21077 G:0.18180
position 3: T:0.32907 C:0.24095 A:0.21197 G:0.21801
Average T:0.31313 C:0.21994 A:0.24014 G:0.22678
Model 1: NearlyNeutral (2 categories)
TREE # 1: (1, 16, ((((((((10, 9), 8), 7), (4, 5)), (14, (18, 19))), ((11, 6), ((12, 13), 15))), (2, 3)), 17)); MP score: 1281
lnL(ntime: 35 np: 38): -6522.468689 +0.000000
20..1 20..16 20..21 21..22 22..23 23..24 24..25 25..26 26..27 27..28 28..10 28..9 27..8 26..7 25..29 29..4 29..5 24..30 30..14 30..31 31..18 31..19 23..32 32..33 33..11 33..6 32..34 34..35 35..12 35..13 34..15 22..36 36..2 36..3 21..17
0.014654 0.009756 0.005931 0.000004 7.775953 1.636833 10.188063 3.018784 0.381612 0.292632 0.000004 0.004699 0.369214 0.518582 3.769554 0.000004 0.019112 5.051825 1.436013 0.595104 0.747140 0.651453 4.763729 1.757267 2.013041 1.211665 1.536470 0.150925 0.000004 0.000004 0.081458 0.130310 0.000004 0.000004 0.018507 1.497671 0.947039 0.037968
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 48.150314
(1: 0.014654, 16: 0.009756, ((((((((10: 0.000004, 9: 0.004699): 0.292632, 8: 0.369214): 0.381612, 7: 0.518582): 3.018784, (4: 0.000004, 5: 0.019112): 3.769554): 10.188063, (14: 1.436013, (18: 0.747140, 19: 0.651453): 0.595104): 5.051825): 1.636833, ((11: 2.013041, 6: 1.211665): 1.757267, ((12: 0.000004, 13: 0.000004): 0.150925, 15: 0.081458): 1.536470): 4.763729): 7.775953, (2: 0.000004, 3: 0.000004): 0.130310): 0.000004, 17: 0.018507): 0.005931);
(C1: 0.014654, C16: 0.009756, ((((((((C10: 0.000004, C9: 0.004699): 0.292632, C8: 0.369214): 0.381612, C7: 0.518582): 3.018784, (C4: 0.000004, C5: 0.019112): 3.769554): 10.188063, (C14: 1.436013, (C18: 0.747140, C19: 0.651453): 0.595104): 5.051825): 1.636833, ((C11: 2.013041, C6: 1.211665): 1.757267, ((C12: 0.000004, C13: 0.000004): 0.150925, C15: 0.081458): 1.536470): 4.763729): 7.775953, (C2: 0.000004, C3: 0.000004): 0.130310): 0.000004, C17: 0.018507): 0.005931);
Detailed output identifying parameters
kappa (ts/tv) = 1.49767
MLEs of dN/dS (w) for site classes (K=2)
p: 0.94704 0.05296
w: 0.03797 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
20..1 0.015 480.3 173.7 0.0889 0.0013 0.0148 0.6 2.6
20..16 0.010 480.3 173.7 0.0889 0.0009 0.0098 0.4 1.7
20..21 0.006 480.3 173.7 0.0889 0.0005 0.0060 0.3 1.0
21..22 0.000 480.3 173.7 0.0889 0.0000 0.0000 0.0 0.0
22..23 7.776 480.3 173.7 0.0889 0.6965 7.8331 334.5 1360.6
23..24 1.637 480.3 173.7 0.0889 0.1466 1.6489 70.4 286.4
24..25 10.188 480.3 173.7 0.0889 0.9126 10.2629 438.3 1782.7
25..26 3.019 480.3 173.7 0.0889 0.2704 3.0410 129.9 528.2
26..27 0.382 480.3 173.7 0.0889 0.0342 0.3844 16.4 66.8
27..28 0.293 480.3 173.7 0.0889 0.0262 0.2948 12.6 51.2
28..10 0.000 480.3 173.7 0.0889 0.0000 0.0000 0.0 0.0
28..9 0.005 480.3 173.7 0.0889 0.0004 0.0047 0.2 0.8
27..8 0.369 480.3 173.7 0.0889 0.0331 0.3719 15.9 64.6
26..7 0.519 480.3 173.7 0.0889 0.0464 0.5224 22.3 90.7
25..29 3.770 480.3 173.7 0.0889 0.3376 3.7972 162.2 659.6
29..4 0.000 480.3 173.7 0.0889 0.0000 0.0000 0.0 0.0
29..5 0.019 480.3 173.7 0.0889 0.0017 0.0193 0.8 3.3
24..30 5.052 480.3 173.7 0.0889 0.4525 5.0889 217.3 884.0
30..14 1.436 480.3 173.7 0.0889 0.1286 1.4466 61.8 251.3
30..31 0.595 480.3 173.7 0.0889 0.0533 0.5995 25.6 104.1
31..18 0.747 480.3 173.7 0.0889 0.0669 0.7526 32.1 130.7
31..19 0.651 480.3 173.7 0.0889 0.0584 0.6562 28.0 114.0
23..32 4.764 480.3 173.7 0.0889 0.4267 4.7987 204.9 833.6
32..33 1.757 480.3 173.7 0.0889 0.1574 1.7702 75.6 307.5
33..11 2.013 480.3 173.7 0.0889 0.1803 2.0278 86.6 352.2
33..6 1.212 480.3 173.7 0.0889 0.1085 1.2206 52.1 212.0
32..34 1.536 480.3 173.7 0.0889 0.1376 1.5478 66.1 268.9
34..35 0.151 480.3 173.7 0.0889 0.0135 0.1520 6.5 26.4
35..12 0.000 480.3 173.7 0.0889 0.0000 0.0000 0.0 0.0
35..13 0.000 480.3 173.7 0.0889 0.0000 0.0000 0.0 0.0
34..15 0.081 480.3 173.7 0.0889 0.0073 0.0821 3.5 14.3
22..36 0.130 480.3 173.7 0.0889 0.0117 0.1313 5.6 22.8
36..2 0.000 480.3 173.7 0.0889 0.0000 0.0000 0.0 0.0
36..3 0.000 480.3 173.7 0.0889 0.0000 0.0000 0.0 0.0
21..17 0.019 480.3 173.7 0.0889 0.0017 0.0186 0.8 3.2
Time used: 5:23
Model 2: PositiveSelection (3 categories)
TREE # 1: (1, 16, ((((((((10, 9), 8), 7), (4, 5)), (14, (18, 19))), ((11, 6), ((12, 13), 15))), (2, 3)), 17)); MP score: 1281
lnL(ntime: 35 np: 40): -6522.468689 +0.000000
20..1 20..16 20..21 21..22 22..23 23..24 24..25 25..26 26..27 27..28 28..10 28..9 27..8 26..7 25..29 29..4 29..5 24..30 30..14 30..31 31..18 31..19 23..32 32..33 33..11 33..6 32..34 34..35 35..12 35..13 34..15 22..36 36..2 36..3 21..17
0.014654 0.009756 0.005931 0.000004 7.775932 1.636826 10.188054 3.018783 0.381612 0.292632 0.000004 0.004699 0.369214 0.518582 3.769548 0.000004 0.019112 5.051826 1.436012 0.595104 0.747140 0.651453 4.763733 1.757266 2.013040 1.211663 1.536468 0.150925 0.000004 0.000004 0.081458 0.130310 0.000004 0.000004 0.018507 1.497671 0.947039 0.018635 0.037968 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 48.150269
(1: 0.014654, 16: 0.009756, ((((((((10: 0.000004, 9: 0.004699): 0.292632, 8: 0.369214): 0.381612, 7: 0.518582): 3.018783, (4: 0.000004, 5: 0.019112): 3.769548): 10.188054, (14: 1.436012, (18: 0.747140, 19: 0.651453): 0.595104): 5.051826): 1.636826, ((11: 2.013040, 6: 1.211663): 1.757266, ((12: 0.000004, 13: 0.000004): 0.150925, 15: 0.081458): 1.536468): 4.763733): 7.775932, (2: 0.000004, 3: 0.000004): 0.130310): 0.000004, 17: 0.018507): 0.005931);
(C1: 0.014654, C16: 0.009756, ((((((((C10: 0.000004, C9: 0.004699): 0.292632, C8: 0.369214): 0.381612, C7: 0.518582): 3.018783, (C4: 0.000004, C5: 0.019112): 3.769548): 10.188054, (C14: 1.436012, (C18: 0.747140, C19: 0.651453): 0.595104): 5.051826): 1.636826, ((C11: 2.013040, C6: 1.211663): 1.757266, ((C12: 0.000004, C13: 0.000004): 0.150925, C15: 0.081458): 1.536468): 4.763733): 7.775932, (C2: 0.000004, C3: 0.000004): 0.130310): 0.000004, C17: 0.018507): 0.005931);
Detailed output identifying parameters
kappa (ts/tv) = 1.49767
MLEs of dN/dS (w) for site classes (K=3)
p: 0.94704 0.01863 0.03433
w: 0.03797 1.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
20..1 0.015 480.3 173.7 0.0889 0.0013 0.0148 0.6 2.6
20..16 0.010 480.3 173.7 0.0889 0.0009 0.0098 0.4 1.7
20..21 0.006 480.3 173.7 0.0889 0.0005 0.0060 0.3 1.0
21..22 0.000 480.3 173.7 0.0889 0.0000 0.0000 0.0 0.0
22..23 7.776 480.3 173.7 0.0889 0.6965 7.8330 334.5 1360.6
23..24 1.637 480.3 173.7 0.0889 0.1466 1.6488 70.4 286.4
24..25 10.188 480.3 173.7 0.0889 0.9126 10.2629 438.3 1782.7
25..26 3.019 480.3 173.7 0.0889 0.2704 3.0410 129.9 528.2
26..27 0.382 480.3 173.7 0.0889 0.0342 0.3844 16.4 66.8
27..28 0.293 480.3 173.7 0.0889 0.0262 0.2948 12.6 51.2
28..10 0.000 480.3 173.7 0.0889 0.0000 0.0000 0.0 0.0
28..9 0.005 480.3 173.7 0.0889 0.0004 0.0047 0.2 0.8
27..8 0.369 480.3 173.7 0.0889 0.0331 0.3719 15.9 64.6
26..7 0.519 480.3 173.7 0.0889 0.0464 0.5224 22.3 90.7
25..29 3.770 480.3 173.7 0.0889 0.3376 3.7972 162.2 659.6
29..4 0.000 480.3 173.7 0.0889 0.0000 0.0000 0.0 0.0
29..5 0.019 480.3 173.7 0.0889 0.0017 0.0193 0.8 3.3
24..30 5.052 480.3 173.7 0.0889 0.4525 5.0889 217.3 884.0
30..14 1.436 480.3 173.7 0.0889 0.1286 1.4466 61.8 251.3
30..31 0.595 480.3 173.7 0.0889 0.0533 0.5995 25.6 104.1
31..18 0.747 480.3 173.7 0.0889 0.0669 0.7526 32.1 130.7
31..19 0.651 480.3 173.7 0.0889 0.0584 0.6562 28.0 114.0
23..32 4.764 480.3 173.7 0.0889 0.4267 4.7987 204.9 833.6
32..33 1.757 480.3 173.7 0.0889 0.1574 1.7702 75.6 307.5
33..11 2.013 480.3 173.7 0.0889 0.1803 2.0278 86.6 352.2
33..6 1.212 480.3 173.7 0.0889 0.1085 1.2206 52.1 212.0
32..34 1.536 480.3 173.7 0.0889 0.1376 1.5478 66.1 268.9
34..35 0.151 480.3 173.7 0.0889 0.0135 0.1520 6.5 26.4
35..12 0.000 480.3 173.7 0.0889 0.0000 0.0000 0.0 0.0
35..13 0.000 480.3 173.7 0.0889 0.0000 0.0000 0.0 0.0
34..15 0.081 480.3 173.7 0.0889 0.0073 0.0821 3.5 14.3
22..36 0.130 480.3 173.7 0.0889 0.0117 0.1313 5.6 22.8
36..2 0.000 480.3 173.7 0.0889 0.0000 0.0000 0.0 0.0
36..3 0.000 480.3 173.7 0.0889 0.0000 0.0000 0.0 0.0
21..17 0.019 480.3 173.7 0.0889 0.0017 0.0186 0.8 3.2
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
2 E 0.862 3.319 +- 2.335
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.365 0.166 0.128 0.103 0.078 0.056 0.040 0.028 0.020 0.015
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000
sum of density on p0-p1 = 1.000000
Time used: 14:26
Model 7: beta (10 categories)
TREE # 1: (1, 16, ((((((((10, 9), 8), 7), (4, 5)), (14, (18, 19))), ((11, 6), ((12, 13), 15))), (2, 3)), 17)); MP score: 1281
lnL(ntime: 35 np: 38): -6501.174144 +0.000000
20..1 20..16 20..21 21..22 22..23 23..24 24..25 25..26 26..27 27..28 28..10 28..9 27..8 26..7 25..29 29..4 29..5 24..30 30..14 30..31 31..18 31..19 23..32 32..33 33..11 33..6 32..34 34..35 35..12 35..13 34..15 22..36 36..2 36..3 21..17
0.014606 0.009741 0.006406 0.129487 6.836029 1.540745 11.199407 2.170966 0.434909 0.297446 0.000004 0.004714 0.369717 0.460497 2.995179 0.000004 0.019083 3.855814 1.151146 0.587800 0.700621 0.688928 4.101820 1.500533 1.625436 0.992284 1.118239 0.142341 0.000004 0.000004 0.090140 0.000004 0.000004 0.000004 0.017974 1.482293 1.041026 15.041953
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 43.062037
(1: 0.014606, 16: 0.009741, ((((((((10: 0.000004, 9: 0.004714): 0.297446, 8: 0.369717): 0.434909, 7: 0.460497): 2.170966, (4: 0.000004, 5: 0.019083): 2.995179): 11.199407, (14: 1.151146, (18: 0.700621, 19: 0.688928): 0.587800): 3.855814): 1.540745, ((11: 1.625436, 6: 0.992284): 1.500533, ((12: 0.000004, 13: 0.000004): 0.142341, 15: 0.090140): 1.118239): 4.101820): 6.836029, (2: 0.000004, 3: 0.000004): 0.000004): 0.129487, 17: 0.017974): 0.006406);
(C1: 0.014606, C16: 0.009741, ((((((((C10: 0.000004, C9: 0.004714): 0.297446, C8: 0.369717): 0.434909, C7: 0.460497): 2.170966, (C4: 0.000004, C5: 0.019083): 2.995179): 11.199407, (C14: 1.151146, (C18: 0.700621, C19: 0.688928): 0.587800): 3.855814): 1.540745, ((C11: 1.625436, C6: 0.992284): 1.500533, ((C12: 0.000004, C13: 0.000004): 0.142341, C15: 0.090140): 1.118239): 4.101820): 6.836029, (C2: 0.000004, C3: 0.000004): 0.000004): 0.129487, C17: 0.017974): 0.006406);
Detailed output identifying parameters
kappa (ts/tv) = 1.48229
Parameters in M7 (beta):
p = 1.04103 q = 15.04195
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00390 0.01183 0.02048 0.03016 0.04125 0.05433 0.07037 0.09134 0.12215 0.18465
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
20..1 0.015 480.5 173.5 0.0630 0.0010 0.0156 0.5 2.7
20..16 0.010 480.5 173.5 0.0630 0.0007 0.0104 0.3 1.8
20..21 0.006 480.5 173.5 0.0630 0.0004 0.0069 0.2 1.2
21..22 0.129 480.5 173.5 0.0630 0.0087 0.1385 4.2 24.0
22..23 6.836 480.5 173.5 0.0630 0.4611 7.3129 221.5 1268.7
23..24 1.541 480.5 173.5 0.0630 0.1039 1.6482 49.9 285.9
24..25 11.199 480.5 173.5 0.0630 0.7554 11.9807 363.0 2078.5
25..26 2.171 480.5 173.5 0.0630 0.1464 2.3224 70.4 402.9
26..27 0.435 480.5 173.5 0.0630 0.0293 0.4653 14.1 80.7
27..28 0.297 480.5 173.5 0.0630 0.0201 0.3182 9.6 55.2
28..10 0.000 480.5 173.5 0.0630 0.0000 0.0000 0.0 0.0
28..9 0.005 480.5 173.5 0.0630 0.0003 0.0050 0.2 0.9
27..8 0.370 480.5 173.5 0.0630 0.0249 0.3955 12.0 68.6
26..7 0.460 480.5 173.5 0.0630 0.0311 0.4926 14.9 85.5
25..29 2.995 480.5 173.5 0.0630 0.2020 3.2041 97.1 555.9
29..4 0.000 480.5 173.5 0.0630 0.0000 0.0000 0.0 0.0
29..5 0.019 480.5 173.5 0.0630 0.0013 0.0204 0.6 3.5
24..30 3.856 480.5 173.5 0.0630 0.2601 4.1248 125.0 715.6
30..14 1.151 480.5 173.5 0.0630 0.0776 1.2315 37.3 213.6
30..31 0.588 480.5 173.5 0.0630 0.0396 0.6288 19.0 109.1
31..18 0.701 480.5 173.5 0.0630 0.0473 0.7495 22.7 130.0
31..19 0.689 480.5 173.5 0.0630 0.0465 0.7370 22.3 127.9
23..32 4.102 480.5 173.5 0.0630 0.2767 4.3880 132.9 761.3
32..33 1.501 480.5 173.5 0.0630 0.1012 1.6052 48.6 278.5
33..11 1.625 480.5 173.5 0.0630 0.1096 1.7388 52.7 301.7
33..6 0.992 480.5 173.5 0.0630 0.0669 1.0615 32.2 184.2
32..34 1.118 480.5 173.5 0.0630 0.0754 1.1963 36.2 207.5
34..35 0.142 480.5 173.5 0.0630 0.0096 0.1523 4.6 26.4
35..12 0.000 480.5 173.5 0.0630 0.0000 0.0000 0.0 0.0
35..13 0.000 480.5 173.5 0.0630 0.0000 0.0000 0.0 0.0
34..15 0.090 480.5 173.5 0.0630 0.0061 0.0964 2.9 16.7
22..36 0.000 480.5 173.5 0.0630 0.0000 0.0000 0.0 0.0
36..2 0.000 480.5 173.5 0.0630 0.0000 0.0000 0.0 0.0
36..3 0.000 480.5 173.5 0.0630 0.0000 0.0000 0.0 0.0
21..17 0.018 480.5 173.5 0.0630 0.0012 0.0192 0.6 3.3
Time used: 37:48
Model 8: beta&w>1 (11 categories)
TREE # 1: (1, 16, ((((((((10, 9), 8), 7), (4, 5)), (14, (18, 19))), ((11, 6), ((12, 13), 15))), (2, 3)), 17)); MP score: 1281
lnL(ntime: 35 np: 40): -6480.407823 +0.000000
20..1 20..16 20..21 21..22 22..23 23..24 24..25 25..26 26..27 27..28 28..10 28..9 27..8 26..7 25..29 29..4 29..5 24..30 30..14 30..31 31..18 31..19 23..32 32..33 33..11 33..6 32..34 34..35 35..12 35..13 34..15 22..36 36..2 36..3 21..17
0.014656 0.009748 0.006266 0.129950 8.192039 1.760945 12.850859 2.774123 0.413773 0.286841 0.000004 0.004693 0.380687 0.523401 3.724537 0.000004 0.018893 4.881242 1.344918 0.665661 0.767563 0.671421 5.079478 1.846640 1.901133 0.976562 1.356139 0.176856 0.000004 0.000004 0.058296 0.000004 0.000004 0.000004 0.018186 1.500640 0.971580 1.412704 28.953177 1.260431
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 50.835535
(1: 0.014656, 16: 0.009748, ((((((((10: 0.000004, 9: 0.004693): 0.286841, 8: 0.380687): 0.413773, 7: 0.523401): 2.774123, (4: 0.000004, 5: 0.018893): 3.724537): 12.850859, (14: 1.344918, (18: 0.767563, 19: 0.671421): 0.665661): 4.881242): 1.760945, ((11: 1.901133, 6: 0.976562): 1.846640, ((12: 0.000004, 13: 0.000004): 0.176856, 15: 0.058296): 1.356139): 5.079478): 8.192039, (2: 0.000004, 3: 0.000004): 0.000004): 0.129950, 17: 0.018186): 0.006266);
(C1: 0.014656, C16: 0.009748, ((((((((C10: 0.000004, C9: 0.004693): 0.286841, C8: 0.380687): 0.413773, C7: 0.523401): 2.774123, (C4: 0.000004, C5: 0.018893): 3.724537): 12.850859, (C14: 1.344918, (C18: 0.767563, C19: 0.671421): 0.665661): 4.881242): 1.760945, ((C11: 1.901133, C6: 0.976562): 1.846640, ((C12: 0.000004, C13: 0.000004): 0.176856, C15: 0.058296): 1.356139): 5.079478): 8.192039, (C2: 0.000004, C3: 0.000004): 0.000004): 0.129950, C17: 0.018186): 0.006266);
Detailed output identifying parameters
kappa (ts/tv) = 1.50064
Parameters in M8 (beta&w>1):
p0 = 0.97158 p = 1.41270 q = 28.95318
(p1 = 0.02842) w = 1.26043
MLEs of dN/dS (w) for site classes (K=11)
p: 0.09716 0.09716 0.09716 0.09716 0.09716 0.09716 0.09716 0.09716 0.09716 0.09716 0.02842
w: 0.00512 0.01205 0.01860 0.02541 0.03285 0.04131 0.05143 0.06438 0.08311 0.12084 1.26043
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
20..1 0.015 480.3 173.7 0.0800 0.0012 0.0151 0.6 2.6
20..16 0.010 480.3 173.7 0.0800 0.0008 0.0100 0.4 1.7
20..21 0.006 480.3 173.7 0.0800 0.0005 0.0064 0.2 1.1
21..22 0.130 480.3 173.7 0.0800 0.0107 0.1335 5.1 23.2
22..23 8.192 480.3 173.7 0.0800 0.6736 8.4166 323.5 1462.3
23..24 1.761 480.3 173.7 0.0800 0.1448 1.8092 69.5 314.3
24..25 12.851 480.3 173.7 0.0800 1.0567 13.2032 507.5 2294.0
25..26 2.774 480.3 173.7 0.0800 0.2281 2.8502 109.6 495.2
26..27 0.414 480.3 173.7 0.0800 0.0340 0.4251 16.3 73.9
27..28 0.287 480.3 173.7 0.0800 0.0236 0.2947 11.3 51.2
28..10 0.000 480.3 173.7 0.0800 0.0000 0.0000 0.0 0.0
28..9 0.005 480.3 173.7 0.0800 0.0004 0.0048 0.2 0.8
27..8 0.381 480.3 173.7 0.0800 0.0313 0.3911 15.0 68.0
26..7 0.523 480.3 173.7 0.0800 0.0430 0.5378 20.7 93.4
25..29 3.725 480.3 173.7 0.0800 0.3063 3.8266 147.1 664.9
29..4 0.000 480.3 173.7 0.0800 0.0000 0.0000 0.0 0.0
29..5 0.019 480.3 173.7 0.0800 0.0016 0.0194 0.7 3.4
24..30 4.881 480.3 173.7 0.0800 0.4014 5.0151 192.8 871.3
30..14 1.345 480.3 173.7 0.0800 0.1106 1.3818 53.1 240.1
30..31 0.666 480.3 173.7 0.0800 0.0547 0.6839 26.3 118.8
31..18 0.768 480.3 173.7 0.0800 0.0631 0.7886 30.3 137.0
31..19 0.671 480.3 173.7 0.0800 0.0552 0.6898 26.5 119.9
23..32 5.079 480.3 173.7 0.0800 0.4177 5.2187 200.6 906.7
32..33 1.847 480.3 173.7 0.0800 0.1519 1.8973 72.9 329.6
33..11 1.901 480.3 173.7 0.0800 0.1563 1.9533 75.1 339.4
33..6 0.977 480.3 173.7 0.0800 0.0803 1.0033 38.6 174.3
32..34 1.356 480.3 173.7 0.0800 0.1115 1.3933 53.6 242.1
34..35 0.177 480.3 173.7 0.0800 0.0145 0.1817 7.0 31.6
35..12 0.000 480.3 173.7 0.0800 0.0000 0.0000 0.0 0.0
35..13 0.000 480.3 173.7 0.0800 0.0000 0.0000 0.0 0.0
34..15 0.058 480.3 173.7 0.0800 0.0048 0.0599 2.3 10.4
22..36 0.000 480.3 173.7 0.0800 0.0000 0.0000 0.0 0.0
36..2 0.000 480.3 173.7 0.0800 0.0000 0.0000 0.0 0.0
36..3 0.000 480.3 173.7 0.0800 0.0000 0.0000 0.0 0.0
21..17 0.018 480.3 173.7 0.0800 0.0015 0.0187 0.7 3.2
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
1 A 0.998** 1.258
2 E 1.000** 1.260
4 G 0.999** 1.259
160 K 0.994** 1.254
172 R 0.975* 1.231
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
2 E 0.979* 3.493 +- 2.033
4 G 0.559 1.983 +- 1.774
160 K 0.602 2.208 +- 1.939
172 R 0.613 2.364 +- 2.116
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000
p : 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.000 0.000 0.000 0.000 0.004 0.038 0.201 0.757
ws: 0.264 0.233 0.177 0.123 0.080 0.051 0.032 0.020 0.013 0.008
Time used: 1:08:18
Model 1: NearlyNeutral -6522.468689
Model 2: PositiveSelection -6522.468689
Model 7: beta -6501.174144
Model 8: beta&w>1 -6480.407823
Model 2 vs 1 0
Model 8 vs 7 41.532642
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
1 A 0.998** 1.258
2 E 1.000** 1.260
4 G 0.999** 1.259
160 K 0.994** 1.254
172 R 0.975* 1.231
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
2 E 0.979* 3.493 +- 2.033
4 G 0.559 1.983 +- 1.774
160 K 0.602 2.208 +- 1.939
172 R 0.613 2.364 +- 2.116
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
