--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -2344.89 -2383.32
2 -2343.70 -2375.58
--------------------------------------
TOTAL -2344.13 -2382.62
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.456464 0.001869 0.374098 0.538351 0.454159 932.54 1216.77 1.000
r(A<->C){all} 0.120457 0.000604 0.071226 0.167809 0.119123 883.42 885.56 1.000
r(A<->G){all} 0.282372 0.001399 0.210266 0.355270 0.281822 671.60 732.72 1.000
r(A<->T){all} 0.046773 0.000148 0.025730 0.070824 0.045955 1035.11 1054.67 1.000
r(C<->G){all} 0.058909 0.000497 0.021058 0.104925 0.056914 608.59 698.02 1.000
r(C<->T){all} 0.438620 0.001654 0.361310 0.517211 0.438733 447.61 556.22 1.000
r(G<->T){all} 0.052870 0.000210 0.025903 0.080814 0.051682 940.61 962.90 1.001
pi(A){all} 0.282581 0.000236 0.254312 0.313861 0.282287 1100.89 1147.25 1.001
pi(C){all} 0.170744 0.000163 0.144672 0.194130 0.170376 1069.96 1080.78 1.001
pi(G){all} 0.190468 0.000180 0.164190 0.215014 0.190072 841.81 956.63 1.000
pi(T){all} 0.356207 0.000270 0.324715 0.388956 0.356727 988.81 1039.46 1.001
alpha{1,2} 0.746113 0.261338 0.176924 1.816016 0.597796 638.85 753.36 1.001
alpha{3} 1.391806 0.849106 0.296931 3.343927 1.121170 804.38 836.07 1.001
pinvar{all} 0.323031 0.018332 0.037497 0.537164 0.338109 471.33 524.44 1.002
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -1276.614916
Model 2: PositiveSelection -1276.614916
Model 7: beta -1276.694245
Model 8: beta&w>1 -1275.939173
Model 2 vs 1 0
Model 8 vs 7 1.510144
-- Starting log on Wed Nov 09 22:46:41 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Wed Nov 09 22:49:02 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Thu Nov 10 06:34:11 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result/gapped_alignment/codeml,A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 30 taxa and 753 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C67
Taxon 2 -> C66
Taxon 3 -> C12
Taxon 4 -> C69
Taxon 5 -> C68
Taxon 6 -> C17
Taxon 7 -> C76
Taxon 8 -> C20
Taxon 9 -> C78
Taxon 10 -> C26
Taxon 11 -> C58
Taxon 12 -> C30
Taxon 13 -> C60
Taxon 14 -> C54
Taxon 15 -> C50
Taxon 16 -> C37
Taxon 17 -> C6
Taxon 18 -> C73
Taxon 19 -> C86
Taxon 20 -> C27
Taxon 21 -> C71
Taxon 22 -> C46
Taxon 23 -> C18
Taxon 24 -> C11
Taxon 25 -> C81
Taxon 26 -> C57
Taxon 27 -> C92
Taxon 28 -> C5
Taxon 29 -> C64
Taxon 30 -> C91
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1668062053
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 289980349
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 8996881339
Seed = 373441166
Swapseed = 1668062053
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 60 unique site patterns
Division 2 has 46 unique site patterns
Division 3 has 95 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -6148.789559 -- 82.122948
Chain 2 -- -6438.102414 -- 82.122948
Chain 3 -- -5836.247946 -- 82.122948
Chain 4 -- -6672.853664 -- 82.122948
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -6673.959832 -- 82.122948
Chain 2 -- -6165.307948 -- 82.122948
Chain 3 -- -6198.241872 -- 82.122948
Chain 4 -- -5768.874098 -- 82.122948
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-6148.790] (-6438.102) (-5836.248) (-6672.854) * [-6673.960] (-6165.308) (-6198.242) (-5768.874)
1000 -- (-2642.379) [-2528.728] (-2608.988) (-2604.665) * (-2597.569) [-2524.854] (-2630.115) (-2545.812) -- 0:33:18
2000 -- (-2423.065) (-2423.237) (-2486.702) [-2401.423] * (-2410.370) (-2439.500) (-2419.390) [-2406.134] -- 0:24:57
3000 -- (-2409.658) (-2398.201) (-2440.736) [-2369.796] * [-2373.920] (-2418.433) (-2397.867) (-2371.679) -- 0:22:09
4000 -- (-2394.596) (-2383.248) (-2363.597) [-2360.017] * [-2357.479] (-2378.103) (-2374.382) (-2367.681) -- 0:20:45
5000 -- (-2389.388) (-2371.545) (-2366.257) [-2357.823] * (-2364.370) (-2371.786) [-2374.628] (-2375.657) -- 0:23:13
Average standard deviation of split frequencies: 0.122512
6000 -- (-2366.285) (-2371.373) (-2369.728) [-2351.381] * (-2370.850) [-2370.624] (-2370.504) (-2378.237) -- 0:22:05
7000 -- (-2368.179) (-2382.493) (-2379.067) [-2363.845] * [-2365.201] (-2360.278) (-2390.926) (-2368.983) -- 0:21:16
8000 -- (-2373.878) (-2376.906) (-2381.824) [-2348.717] * [-2355.253] (-2359.460) (-2368.855) (-2370.095) -- 0:20:40
9000 -- [-2365.876] (-2393.298) (-2376.232) (-2353.477) * (-2356.528) [-2359.402] (-2362.705) (-2366.408) -- 0:22:01
10000 -- (-2355.724) [-2363.968] (-2376.365) (-2376.444) * (-2375.300) [-2351.747] (-2386.983) (-2376.914) -- 0:21:27
Average standard deviation of split frequencies: 0.088388
11000 -- [-2354.948] (-2364.390) (-2371.396) (-2380.343) * (-2351.364) (-2378.588) [-2362.290] (-2355.723) -- 0:20:58
12000 -- (-2355.547) (-2357.679) (-2372.380) [-2353.017] * [-2353.422] (-2361.966) (-2368.046) (-2360.010) -- 0:20:35
13000 -- (-2368.629) [-2355.628] (-2369.696) (-2364.215) * (-2364.368) (-2355.962) [-2361.969] (-2362.847) -- 0:20:14
14000 -- (-2370.241) (-2349.985) (-2375.261) [-2356.311] * (-2369.295) (-2358.091) [-2356.445] (-2370.355) -- 0:21:07
15000 -- (-2372.881) [-2356.400] (-2363.812) (-2368.798) * (-2361.417) [-2358.293] (-2362.819) (-2379.646) -- 0:20:47
Average standard deviation of split frequencies: 0.065813
16000 -- (-2367.085) [-2350.978] (-2356.794) (-2368.793) * (-2370.432) [-2348.518] (-2365.640) (-2359.290) -- 0:20:30
17000 -- (-2365.837) (-2345.810) [-2354.875] (-2373.670) * (-2369.130) (-2374.733) (-2356.688) [-2355.103] -- 0:20:14
18000 -- (-2367.856) (-2368.083) [-2357.848] (-2365.434) * [-2369.523] (-2356.584) (-2379.904) (-2369.595) -- 0:20:54
19000 -- (-2368.327) (-2360.116) (-2382.664) [-2353.574] * (-2358.715) [-2358.908] (-2377.636) (-2351.441) -- 0:20:39
20000 -- (-2366.086) (-2383.853) [-2348.631] (-2361.975) * (-2369.309) (-2383.672) [-2362.375] (-2357.516) -- 0:20:25
Average standard deviation of split frequencies: 0.056498
21000 -- (-2362.227) (-2368.429) [-2353.089] (-2367.646) * [-2373.168] (-2392.444) (-2358.187) (-2367.582) -- 0:20:12
22000 -- [-2360.548] (-2370.399) (-2367.299) (-2366.706) * [-2346.206] (-2373.667) (-2369.210) (-2358.598) -- 0:20:44
23000 -- (-2359.230) (-2387.995) [-2344.736] (-2369.091) * (-2366.571) (-2375.764) [-2349.248] (-2354.020) -- 0:20:31
24000 -- [-2365.083] (-2360.733) (-2359.381) (-2400.015) * (-2362.529) [-2353.753] (-2379.998) (-2366.490) -- 0:20:20
25000 -- [-2367.986] (-2372.730) (-2361.689) (-2362.531) * (-2381.199) [-2351.246] (-2370.350) (-2376.848) -- 0:20:09
Average standard deviation of split frequencies: 0.045215
26000 -- (-2379.090) (-2367.987) [-2359.183] (-2394.029) * (-2365.011) (-2371.520) (-2365.323) [-2343.948] -- 0:20:36
27000 -- (-2377.488) [-2345.401] (-2365.491) (-2370.668) * (-2362.060) (-2372.954) (-2374.267) [-2363.636] -- 0:20:25
28000 -- (-2370.054) (-2370.065) (-2352.569) [-2356.180] * (-2357.403) (-2364.122) [-2353.322] (-2368.590) -- 0:20:15
29000 -- (-2368.046) [-2357.215] (-2378.480) (-2378.584) * (-2348.971) (-2366.602) (-2354.690) [-2357.893] -- 0:20:05
30000 -- [-2369.941] (-2366.963) (-2371.754) (-2359.400) * (-2346.793) (-2381.489) [-2356.137] (-2363.235) -- 0:20:28
Average standard deviation of split frequencies: 0.037551
31000 -- [-2349.516] (-2374.904) (-2364.415) (-2363.332) * [-2351.044] (-2373.302) (-2370.650) (-2370.530) -- 0:20:19
32000 -- (-2361.747) (-2380.678) [-2366.905] (-2367.159) * [-2364.605] (-2377.287) (-2366.427) (-2388.134) -- 0:20:10
33000 -- (-2366.442) (-2377.755) (-2350.759) [-2370.172] * (-2375.305) (-2375.264) [-2346.453] (-2372.032) -- 0:20:01
34000 -- (-2355.473) (-2379.990) [-2352.218] (-2365.364) * (-2371.741) (-2376.737) [-2358.260] (-2365.296) -- 0:20:21
35000 -- (-2365.773) [-2364.902] (-2368.859) (-2365.499) * (-2369.839) (-2369.016) [-2360.101] (-2378.355) -- 0:20:13
Average standard deviation of split frequencies: 0.034981
36000 -- (-2369.260) (-2361.709) (-2365.520) [-2368.574] * (-2380.927) (-2372.044) [-2361.562] (-2366.265) -- 0:20:05
37000 -- [-2358.648] (-2349.025) (-2355.022) (-2362.824) * (-2367.630) [-2353.443] (-2370.569) (-2376.528) -- 0:19:57
38000 -- (-2372.084) (-2376.741) (-2362.183) [-2347.623] * (-2359.587) (-2371.901) (-2377.180) [-2353.003] -- 0:20:15
39000 -- [-2358.883] (-2355.094) (-2368.095) (-2371.885) * (-2372.897) (-2355.832) [-2358.137] (-2350.481) -- 0:20:07
40000 -- (-2372.674) (-2358.415) (-2377.136) [-2360.707] * (-2368.068) (-2362.992) (-2367.129) [-2354.285] -- 0:20:00
Average standard deviation of split frequencies: 0.034445
41000 -- (-2361.957) (-2371.455) (-2364.708) [-2362.528] * (-2363.006) (-2377.615) (-2374.049) [-2349.641] -- 0:19:52
42000 -- (-2394.553) (-2374.585) (-2369.521) [-2353.665] * (-2368.355) (-2372.753) (-2365.595) [-2371.024] -- 0:20:08
43000 -- (-2395.628) (-2370.874) (-2367.994) [-2363.720] * [-2364.939] (-2362.422) (-2353.942) (-2373.866) -- 0:20:01
44000 -- (-2384.061) (-2358.548) [-2366.372] (-2366.068) * (-2375.758) (-2360.707) [-2351.887] (-2384.923) -- 0:19:55
45000 -- (-2367.212) (-2361.751) [-2363.331] (-2360.210) * (-2393.087) (-2354.666) [-2353.269] (-2370.484) -- 0:20:09
Average standard deviation of split frequencies: 0.027777
46000 -- (-2371.090) (-2375.728) (-2355.217) [-2358.593] * (-2380.886) [-2357.669] (-2377.447) (-2360.522) -- 0:20:02
47000 -- (-2369.298) [-2356.348] (-2360.602) (-2374.575) * (-2351.369) [-2361.759] (-2363.261) (-2369.810) -- 0:19:56
48000 -- (-2364.810) (-2363.116) (-2362.892) [-2352.328] * (-2376.751) (-2374.978) (-2371.886) [-2360.586] -- 0:19:50
49000 -- (-2386.146) (-2363.807) (-2378.451) [-2349.665] * (-2364.770) (-2353.700) (-2348.485) [-2367.931] -- 0:20:03
50000 -- (-2363.075) (-2383.690) [-2366.008] (-2372.658) * (-2374.685) [-2355.657] (-2374.807) (-2360.415) -- 0:19:57
Average standard deviation of split frequencies: 0.027912
51000 -- (-2352.068) [-2364.667] (-2374.550) (-2370.281) * (-2371.744) [-2360.108] (-2370.959) (-2372.495) -- 0:19:50
52000 -- (-2361.830) (-2369.205) (-2372.652) [-2353.243] * (-2353.866) (-2377.439) (-2356.535) [-2354.543] -- 0:19:45
53000 -- [-2357.648] (-2372.932) (-2361.983) (-2372.280) * (-2359.727) (-2369.855) [-2361.075] (-2373.763) -- 0:19:57
54000 -- (-2356.602) (-2372.173) [-2364.208] (-2378.698) * (-2355.466) (-2353.028) [-2357.208] (-2374.908) -- 0:19:51
55000 -- [-2359.967] (-2364.771) (-2366.933) (-2375.845) * [-2350.470] (-2365.280) (-2367.238) (-2366.162) -- 0:19:45
Average standard deviation of split frequencies: 0.026962
56000 -- (-2361.510) [-2351.919] (-2384.395) (-2360.956) * (-2348.271) [-2361.394] (-2370.480) (-2372.706) -- 0:19:40
57000 -- (-2364.174) [-2344.982] (-2362.613) (-2383.914) * [-2345.931] (-2367.009) (-2377.460) (-2365.095) -- 0:19:51
58000 -- (-2375.720) (-2364.562) [-2359.370] (-2376.685) * (-2355.306) [-2355.517] (-2382.419) (-2371.148) -- 0:19:45
59000 -- (-2376.332) [-2349.655] (-2359.469) (-2377.748) * [-2349.097] (-2362.764) (-2370.562) (-2381.955) -- 0:19:40
60000 -- (-2375.631) [-2359.357] (-2357.489) (-2369.877) * (-2366.383) [-2359.661] (-2361.186) (-2370.450) -- 0:19:35
Average standard deviation of split frequencies: 0.025482
61000 -- (-2363.702) (-2363.524) (-2360.828) [-2369.676] * (-2365.493) [-2356.765] (-2364.629) (-2364.375) -- 0:19:45
62000 -- (-2360.946) (-2367.588) (-2353.335) [-2365.042] * (-2363.260) (-2372.723) (-2372.064) [-2356.800] -- 0:19:40
63000 -- (-2355.441) (-2366.746) [-2353.352] (-2372.549) * (-2359.995) (-2360.726) [-2356.282] (-2378.605) -- 0:19:34
64000 -- (-2360.423) [-2359.245] (-2355.258) (-2366.186) * [-2344.260] (-2368.911) (-2372.390) (-2380.533) -- 0:19:30
65000 -- (-2359.198) (-2347.788) [-2376.360] (-2368.776) * (-2361.224) (-2353.411) [-2356.757] (-2391.296) -- 0:19:39
Average standard deviation of split frequencies: 0.025954
66000 -- [-2359.744] (-2367.023) (-2373.323) (-2365.627) * (-2362.413) [-2358.547] (-2372.361) (-2377.242) -- 0:19:34
67000 -- (-2369.634) [-2358.541] (-2368.074) (-2358.477) * (-2380.441) (-2366.545) [-2365.348] (-2364.041) -- 0:19:29
68000 -- (-2365.945) (-2366.173) [-2361.109] (-2366.864) * (-2366.703) [-2363.748] (-2373.684) (-2379.620) -- 0:19:25
69000 -- (-2377.859) (-2367.008) [-2362.655] (-2359.870) * (-2364.869) (-2362.329) (-2383.263) [-2375.459] -- 0:19:33
70000 -- (-2384.281) (-2361.244) (-2381.361) [-2356.854] * [-2366.911] (-2374.014) (-2364.145) (-2360.890) -- 0:19:29
Average standard deviation of split frequencies: 0.027181
71000 -- (-2379.064) [-2357.874] (-2381.862) (-2365.125) * (-2365.436) (-2391.221) (-2362.961) [-2366.576] -- 0:19:24
72000 -- [-2362.171] (-2379.687) (-2369.966) (-2354.392) * [-2365.886] (-2370.465) (-2359.556) (-2363.969) -- 0:19:20
73000 -- (-2356.089) (-2361.444) (-2373.266) [-2362.501] * (-2368.810) (-2385.675) (-2383.629) [-2365.515] -- 0:19:15
74000 -- [-2355.023] (-2362.925) (-2367.997) (-2362.395) * (-2369.272) (-2363.921) (-2370.715) [-2358.702] -- 0:19:23
75000 -- (-2359.662) (-2361.490) (-2364.785) [-2351.011] * (-2360.914) [-2374.812] (-2361.586) (-2371.430) -- 0:19:19
Average standard deviation of split frequencies: 0.030926
76000 -- [-2360.533] (-2355.890) (-2380.462) (-2362.525) * (-2365.301) (-2391.341) (-2352.166) [-2357.273] -- 0:19:15
77000 -- [-2370.848] (-2373.547) (-2364.587) (-2369.919) * (-2359.013) (-2374.218) (-2351.308) [-2378.404] -- 0:19:10
78000 -- (-2371.204) (-2369.956) [-2357.532] (-2376.314) * (-2369.460) (-2359.693) [-2359.173] (-2355.682) -- 0:19:18
79000 -- (-2382.739) (-2369.576) [-2356.259] (-2366.939) * (-2361.154) (-2375.455) [-2353.897] (-2360.186) -- 0:19:14
80000 -- (-2378.508) [-2364.972] (-2353.819) (-2377.692) * (-2377.568) (-2364.789) [-2361.299] (-2371.536) -- 0:19:10
Average standard deviation of split frequencies: 0.032392
81000 -- (-2379.723) (-2366.816) (-2373.270) [-2356.151] * (-2375.499) (-2374.268) (-2368.860) [-2351.965] -- 0:19:05
82000 -- (-2372.696) (-2377.510) (-2363.150) [-2356.973] * (-2372.169) [-2364.629] (-2365.209) (-2354.907) -- 0:19:13
83000 -- (-2360.898) (-2389.371) (-2368.265) [-2352.900] * (-2368.842) [-2354.710] (-2368.408) (-2371.418) -- 0:19:09
84000 -- (-2364.530) (-2386.470) (-2376.788) [-2360.382] * [-2370.888] (-2386.145) (-2370.192) (-2372.226) -- 0:19:05
85000 -- [-2353.617] (-2356.156) (-2364.047) (-2369.868) * (-2381.176) [-2349.820] (-2366.349) (-2368.438) -- 0:19:01
Average standard deviation of split frequencies: 0.031731
86000 -- (-2361.159) [-2362.261] (-2360.577) (-2372.301) * [-2370.322] (-2363.967) (-2356.043) (-2369.763) -- 0:19:07
87000 -- [-2357.741] (-2375.119) (-2362.995) (-2394.424) * (-2365.265) (-2382.825) (-2379.022) [-2355.063] -- 0:19:03
88000 -- (-2357.677) (-2375.984) [-2358.753] (-2380.842) * (-2375.185) (-2352.932) [-2358.397] (-2372.473) -- 0:19:00
89000 -- (-2361.589) (-2368.642) (-2352.160) [-2365.546] * (-2371.832) [-2342.237] (-2365.751) (-2368.638) -- 0:18:56
90000 -- (-2368.959) (-2356.801) (-2350.215) [-2357.011] * [-2357.219] (-2372.814) (-2359.815) (-2373.151) -- 0:18:52
Average standard deviation of split frequencies: 0.032135
91000 -- [-2355.810] (-2372.476) (-2373.238) (-2383.134) * (-2371.636) [-2360.897] (-2371.050) (-2369.365) -- 0:18:58
92000 -- [-2349.063] (-2364.753) (-2363.095) (-2368.702) * (-2357.677) [-2353.469] (-2355.092) (-2365.515) -- 0:18:55
93000 -- (-2360.522) [-2360.454] (-2377.469) (-2367.435) * (-2366.209) (-2359.380) (-2356.823) [-2369.099] -- 0:18:51
94000 -- [-2357.981] (-2369.553) (-2371.518) (-2371.156) * (-2357.109) (-2356.409) [-2351.700] (-2389.697) -- 0:18:47
95000 -- [-2344.698] (-2366.093) (-2364.696) (-2369.446) * [-2354.607] (-2380.155) (-2388.707) (-2356.709) -- 0:18:53
Average standard deviation of split frequencies: 0.030224
96000 -- (-2370.681) (-2358.596) [-2356.967] (-2368.053) * (-2364.581) (-2353.754) [-2362.272] (-2365.106) -- 0:18:50
97000 -- [-2360.473] (-2357.299) (-2358.184) (-2372.155) * (-2370.686) (-2362.906) (-2378.733) [-2352.163] -- 0:18:46
98000 -- (-2362.309) (-2358.342) [-2370.468] (-2362.718) * (-2382.198) [-2357.013] (-2363.104) (-2359.925) -- 0:18:42
99000 -- (-2367.831) (-2361.202) [-2369.235] (-2389.546) * (-2367.024) [-2352.544] (-2363.116) (-2357.017) -- 0:18:48
100000 -- [-2356.218] (-2361.794) (-2361.246) (-2384.187) * (-2376.043) [-2357.725] (-2368.720) (-2365.206) -- 0:18:45
Average standard deviation of split frequencies: 0.029482
101000 -- (-2369.620) [-2349.940] (-2367.176) (-2362.009) * (-2359.426) (-2362.768) [-2349.850] (-2366.065) -- 0:18:41
102000 -- (-2368.116) [-2357.522] (-2381.203) (-2384.172) * (-2367.577) (-2370.540) [-2356.391] (-2370.814) -- 0:18:38
103000 -- [-2363.922] (-2360.799) (-2374.224) (-2355.917) * (-2370.830) (-2373.590) (-2369.388) [-2359.538] -- 0:18:43
104000 -- (-2361.049) (-2369.335) (-2361.796) [-2358.516] * (-2374.114) [-2351.268] (-2365.889) (-2356.520) -- 0:18:40
105000 -- (-2364.708) [-2348.238] (-2366.395) (-2367.874) * (-2370.420) (-2360.318) (-2372.082) [-2348.868] -- 0:18:36
Average standard deviation of split frequencies: 0.028813
106000 -- (-2364.408) (-2348.892) (-2378.889) [-2352.456] * (-2367.262) (-2369.188) (-2371.872) [-2363.957] -- 0:18:33
107000 -- [-2341.797] (-2357.287) (-2381.207) (-2367.991) * (-2368.219) (-2388.046) (-2384.148) [-2362.911] -- 0:18:38
108000 -- [-2355.396] (-2364.226) (-2389.941) (-2378.996) * (-2365.223) (-2366.366) (-2371.584) [-2360.784] -- 0:18:35
109000 -- (-2360.552) (-2388.387) [-2360.032] (-2365.925) * (-2370.320) (-2361.030) (-2369.735) [-2351.980] -- 0:18:31
110000 -- (-2357.969) (-2375.017) [-2346.955] (-2369.560) * (-2368.430) (-2358.848) (-2359.412) [-2368.085] -- 0:18:28
Average standard deviation of split frequencies: 0.027870
111000 -- [-2360.383] (-2388.519) (-2367.448) (-2366.991) * (-2357.941) (-2385.557) [-2360.358] (-2360.138) -- 0:18:33
112000 -- (-2362.923) (-2362.898) (-2369.704) [-2370.177] * (-2385.990) (-2360.380) [-2354.346] (-2382.401) -- 0:18:30
113000 -- (-2366.477) (-2358.996) (-2351.166) [-2362.938] * (-2370.427) [-2367.493] (-2369.430) (-2363.195) -- 0:18:26
114000 -- (-2371.925) (-2371.236) [-2359.752] (-2371.080) * (-2363.901) [-2371.740] (-2360.496) (-2370.952) -- 0:18:23
115000 -- [-2346.058] (-2385.399) (-2369.523) (-2373.574) * (-2374.738) (-2364.000) (-2353.025) [-2354.969] -- 0:18:28
Average standard deviation of split frequencies: 0.027808
116000 -- (-2372.856) (-2358.750) [-2362.878] (-2378.995) * (-2367.638) [-2353.435] (-2378.641) (-2379.713) -- 0:18:25
117000 -- (-2405.843) (-2359.887) (-2362.871) [-2350.848] * (-2372.633) (-2375.457) (-2369.747) [-2356.263] -- 0:18:21
118000 -- (-2381.579) (-2373.491) [-2373.576] (-2376.953) * (-2362.149) (-2375.092) (-2367.108) [-2368.766] -- 0:18:18
119000 -- (-2368.467) (-2381.930) [-2360.102] (-2373.318) * (-2372.738) (-2370.106) (-2361.274) [-2358.019] -- 0:18:23
120000 -- (-2376.844) [-2356.814] (-2365.402) (-2366.559) * (-2375.286) (-2366.188) (-2357.246) [-2363.909] -- 0:18:20
Average standard deviation of split frequencies: 0.026962
121000 -- (-2380.278) [-2364.165] (-2364.835) (-2375.879) * (-2370.247) (-2369.422) (-2366.813) [-2368.140] -- 0:18:16
122000 -- (-2391.430) (-2374.392) (-2369.047) [-2355.039] * (-2362.671) (-2359.075) [-2376.990] (-2378.174) -- 0:18:13
123000 -- (-2374.430) (-2370.698) [-2349.726] (-2363.518) * (-2355.757) [-2355.107] (-2370.185) (-2377.509) -- 0:18:18
124000 -- (-2388.328) [-2370.094] (-2362.624) (-2365.565) * (-2365.775) [-2353.394] (-2354.838) (-2370.503) -- 0:18:15
125000 -- (-2369.061) [-2356.867] (-2356.856) (-2376.137) * (-2379.321) (-2346.949) [-2354.825] (-2378.470) -- 0:18:12
Average standard deviation of split frequencies: 0.026510
126000 -- (-2363.247) (-2367.675) [-2360.633] (-2354.045) * (-2374.027) (-2347.953) [-2353.139] (-2376.187) -- 0:18:09
127000 -- (-2367.390) (-2369.723) [-2353.838] (-2371.294) * (-2371.709) [-2357.141] (-2372.380) (-2363.913) -- 0:18:12
128000 -- (-2366.272) (-2381.959) (-2358.156) [-2357.179] * (-2361.105) [-2361.858] (-2377.109) (-2364.708) -- 0:18:10
129000 -- (-2371.513) (-2361.797) [-2359.425] (-2363.878) * [-2347.904] (-2376.421) (-2369.263) (-2368.161) -- 0:18:07
130000 -- (-2370.065) [-2358.605] (-2370.516) (-2360.327) * [-2352.696] (-2369.289) (-2364.752) (-2362.025) -- 0:18:10
Average standard deviation of split frequencies: 0.025306
131000 -- (-2371.969) (-2362.785) [-2369.532] (-2377.106) * (-2385.760) [-2363.289] (-2369.282) (-2359.364) -- 0:18:07
132000 -- [-2365.073] (-2376.669) (-2362.486) (-2379.649) * (-2380.983) (-2353.037) (-2363.733) [-2350.095] -- 0:18:05
133000 -- [-2347.768] (-2363.096) (-2372.663) (-2375.947) * [-2357.596] (-2359.401) (-2357.939) (-2358.596) -- 0:18:02
134000 -- [-2361.214] (-2359.742) (-2374.127) (-2359.977) * [-2350.173] (-2356.300) (-2362.506) (-2367.089) -- 0:18:05
135000 -- [-2360.621] (-2366.287) (-2367.815) (-2366.363) * (-2359.219) [-2352.554] (-2362.250) (-2354.951) -- 0:18:02
Average standard deviation of split frequencies: 0.025283
136000 -- (-2350.849) [-2359.244] (-2372.425) (-2392.405) * (-2361.669) (-2362.472) [-2359.986] (-2358.251) -- 0:18:00
137000 -- [-2353.553] (-2376.440) (-2352.800) (-2388.287) * [-2358.838] (-2369.765) (-2378.958) (-2373.932) -- 0:17:57
138000 -- [-2354.488] (-2362.074) (-2374.153) (-2365.404) * (-2362.441) (-2376.354) [-2347.038] (-2371.684) -- 0:18:00
139000 -- (-2365.726) [-2357.264] (-2365.626) (-2360.893) * [-2360.227] (-2366.291) (-2385.961) (-2369.206) -- 0:17:57
140000 -- (-2366.798) (-2380.125) [-2357.601] (-2368.329) * (-2371.549) [-2364.027] (-2363.771) (-2364.606) -- 0:17:55
Average standard deviation of split frequencies: 0.022621
141000 -- (-2369.257) (-2376.964) [-2351.943] (-2359.969) * (-2372.729) [-2364.223] (-2370.496) (-2368.865) -- 0:17:52
142000 -- (-2359.877) (-2364.135) [-2363.626] (-2367.349) * (-2367.740) [-2347.973] (-2371.969) (-2360.622) -- 0:17:49
143000 -- (-2364.468) [-2354.095] (-2364.298) (-2368.007) * (-2366.750) [-2355.844] (-2367.699) (-2364.680) -- 0:17:52
144000 -- (-2361.693) (-2374.231) [-2358.567] (-2366.235) * (-2372.042) [-2346.078] (-2368.795) (-2367.200) -- 0:17:50
145000 -- (-2359.402) [-2371.040] (-2365.866) (-2371.844) * (-2366.548) (-2351.500) [-2378.804] (-2362.179) -- 0:17:47
Average standard deviation of split frequencies: 0.021666
146000 -- [-2363.302] (-2383.401) (-2378.476) (-2367.562) * (-2368.592) [-2348.687] (-2370.843) (-2358.048) -- 0:17:50
147000 -- [-2354.293] (-2358.980) (-2392.018) (-2356.207) * [-2362.729] (-2359.931) (-2366.940) (-2356.743) -- 0:17:47
148000 -- (-2355.351) [-2361.230] (-2363.250) (-2366.039) * (-2360.074) [-2349.050] (-2361.331) (-2379.126) -- 0:17:45
149000 -- (-2367.681) (-2357.687) (-2389.222) [-2354.667] * (-2366.887) (-2357.420) (-2361.317) [-2349.595] -- 0:17:42
150000 -- [-2354.576] (-2379.077) (-2366.179) (-2370.243) * (-2361.408) (-2361.090) (-2344.696) [-2354.031] -- 0:17:39
Average standard deviation of split frequencies: 0.022174
151000 -- (-2371.598) (-2380.391) (-2364.882) [-2360.823] * (-2360.123) (-2358.391) (-2373.621) [-2364.328] -- 0:17:42
152000 -- [-2354.597] (-2363.672) (-2361.911) (-2361.203) * (-2364.873) (-2354.373) (-2372.924) [-2362.368] -- 0:17:40
153000 -- (-2367.844) (-2353.881) [-2369.043] (-2363.330) * [-2364.291] (-2358.810) (-2376.388) (-2366.533) -- 0:17:37
154000 -- (-2370.160) [-2351.064] (-2376.369) (-2366.576) * (-2361.677) [-2359.508] (-2359.022) (-2370.830) -- 0:17:34
155000 -- (-2380.998) (-2359.938) [-2371.712] (-2366.240) * (-2363.076) (-2376.146) [-2361.257] (-2361.968) -- 0:17:37
Average standard deviation of split frequencies: 0.020575
156000 -- (-2371.411) (-2373.429) (-2362.461) [-2345.497] * (-2373.717) (-2365.671) (-2377.860) [-2350.315] -- 0:17:35
157000 -- (-2372.303) (-2387.140) [-2347.147] (-2354.019) * (-2361.391) (-2370.840) (-2371.185) [-2354.746] -- 0:17:32
158000 -- (-2383.929) (-2361.961) (-2381.271) [-2355.120] * (-2369.692) (-2366.888) (-2369.935) [-2356.942] -- 0:17:29
159000 -- (-2374.255) (-2367.611) [-2367.856] (-2363.761) * (-2368.913) (-2368.121) [-2357.475] (-2364.859) -- 0:17:27
160000 -- (-2356.075) (-2367.472) (-2366.403) [-2349.785] * (-2369.449) [-2361.576] (-2350.306) (-2369.746) -- 0:17:30
Average standard deviation of split frequencies: 0.020580
161000 -- [-2351.988] (-2370.159) (-2378.721) (-2367.224) * (-2375.558) (-2351.073) [-2359.933] (-2377.963) -- 0:17:27
162000 -- [-2357.009] (-2372.225) (-2368.147) (-2377.057) * (-2356.577) (-2358.979) (-2363.700) [-2362.008] -- 0:17:24
163000 -- (-2390.134) [-2348.331] (-2364.645) (-2364.459) * (-2380.951) [-2356.894] (-2353.727) (-2375.734) -- 0:17:22
164000 -- (-2364.617) (-2368.084) (-2367.321) [-2357.862] * (-2374.018) [-2357.514] (-2360.416) (-2378.961) -- 0:17:25
165000 -- (-2355.065) (-2357.767) [-2373.181] (-2382.323) * (-2384.023) (-2366.212) (-2368.252) [-2353.514] -- 0:17:22
Average standard deviation of split frequencies: 0.020446
166000 -- (-2365.367) (-2365.133) [-2357.582] (-2380.051) * (-2374.297) [-2352.887] (-2375.541) (-2352.729) -- 0:17:19
167000 -- (-2363.006) (-2365.968) [-2365.289] (-2399.091) * (-2376.030) (-2374.623) (-2367.026) [-2378.342] -- 0:17:17
168000 -- [-2377.722] (-2368.029) (-2374.600) (-2382.220) * [-2348.187] (-2369.883) (-2351.730) (-2363.218) -- 0:17:20
169000 -- [-2352.798] (-2372.772) (-2355.262) (-2401.026) * [-2349.536] (-2359.864) (-2359.634) (-2367.544) -- 0:17:17
170000 -- (-2358.125) [-2363.408] (-2369.345) (-2367.486) * [-2349.793] (-2368.523) (-2362.153) (-2373.963) -- 0:17:15
Average standard deviation of split frequencies: 0.018743
171000 -- (-2371.051) [-2365.426] (-2387.711) (-2380.051) * [-2355.463] (-2382.435) (-2376.987) (-2387.792) -- 0:17:12
172000 -- (-2370.014) (-2373.516) (-2374.305) [-2366.072] * (-2378.105) [-2354.207] (-2357.587) (-2361.899) -- 0:17:15
173000 -- (-2383.802) (-2373.387) [-2369.366] (-2363.972) * [-2354.619] (-2361.208) (-2362.107) (-2364.343) -- 0:17:12
174000 -- (-2377.330) (-2377.175) (-2365.675) [-2357.506] * [-2353.165] (-2362.341) (-2379.071) (-2358.178) -- 0:17:10
175000 -- [-2364.811] (-2355.570) (-2369.026) (-2354.315) * (-2365.049) [-2351.443] (-2356.229) (-2376.738) -- 0:17:07
Average standard deviation of split frequencies: 0.017693
176000 -- [-2363.447] (-2382.514) (-2372.753) (-2363.625) * (-2355.512) [-2356.047] (-2356.931) (-2365.712) -- 0:17:10
177000 -- [-2376.638] (-2366.324) (-2358.678) (-2385.034) * [-2360.104] (-2385.476) (-2370.698) (-2349.800) -- 0:17:07
178000 -- [-2364.929] (-2361.617) (-2350.265) (-2381.997) * (-2379.977) (-2370.660) (-2378.879) [-2353.514] -- 0:17:05
179000 -- (-2392.440) [-2366.534] (-2365.489) (-2357.369) * (-2372.421) (-2365.644) [-2368.179] (-2357.843) -- 0:17:02
180000 -- (-2380.828) [-2368.461] (-2357.609) (-2365.641) * (-2373.870) (-2359.526) (-2372.705) [-2360.275] -- 0:17:05
Average standard deviation of split frequencies: 0.017677
181000 -- (-2388.088) [-2371.467] (-2373.274) (-2357.811) * (-2379.905) [-2351.284] (-2364.492) (-2370.077) -- 0:17:02
182000 -- (-2377.864) [-2352.857] (-2353.208) (-2365.966) * (-2365.833) (-2364.737) (-2365.311) [-2360.893] -- 0:17:00
183000 -- (-2370.789) [-2351.172] (-2384.996) (-2362.014) * (-2366.839) (-2379.175) [-2358.278] (-2356.946) -- 0:16:57
184000 -- (-2367.278) (-2358.649) (-2367.906) [-2353.589] * [-2355.202] (-2381.449) (-2377.515) (-2365.543) -- 0:17:00
185000 -- (-2369.997) [-2364.281] (-2381.354) (-2366.161) * [-2354.790] (-2381.654) (-2381.226) (-2357.007) -- 0:16:57
Average standard deviation of split frequencies: 0.016456
186000 -- (-2372.114) [-2359.778] (-2380.812) (-2379.810) * (-2360.204) (-2379.250) (-2356.306) [-2364.446] -- 0:16:55
187000 -- (-2393.925) (-2355.207) [-2358.912] (-2383.423) * [-2365.724] (-2385.477) (-2349.664) (-2363.691) -- 0:16:52
188000 -- [-2352.932] (-2348.740) (-2367.620) (-2381.191) * (-2367.006) (-2361.337) (-2369.864) [-2361.138] -- 0:16:55
189000 -- (-2380.402) (-2364.623) [-2365.129] (-2356.559) * [-2357.932] (-2372.968) (-2378.299) (-2378.354) -- 0:16:52
190000 -- (-2379.508) (-2366.111) [-2362.927] (-2376.825) * (-2382.942) [-2348.616] (-2375.131) (-2372.097) -- 0:16:50
Average standard deviation of split frequencies: 0.016436
191000 -- (-2375.654) [-2352.249] (-2364.942) (-2371.715) * (-2367.167) [-2355.745] (-2389.553) (-2355.485) -- 0:16:52
192000 -- [-2370.514] (-2364.512) (-2379.443) (-2365.728) * [-2365.647] (-2348.466) (-2383.816) (-2377.012) -- 0:16:50
193000 -- (-2366.430) (-2368.045) [-2361.942] (-2379.220) * [-2364.710] (-2359.609) (-2363.782) (-2375.084) -- 0:16:47
194000 -- (-2366.793) (-2369.506) [-2350.065] (-2371.879) * [-2356.357] (-2358.208) (-2367.343) (-2367.139) -- 0:16:45
195000 -- (-2370.896) (-2367.088) (-2364.174) [-2363.585] * (-2354.635) [-2357.216] (-2376.795) (-2383.667) -- 0:16:47
Average standard deviation of split frequencies: 0.016069
196000 -- (-2354.685) (-2349.294) [-2357.684] (-2370.537) * (-2377.521) (-2358.047) (-2358.420) [-2353.756] -- 0:16:45
197000 -- (-2364.449) (-2369.726) [-2356.196] (-2361.519) * (-2379.243) (-2363.156) (-2352.426) [-2348.537] -- 0:16:42
198000 -- (-2367.597) (-2358.846) (-2378.803) [-2345.587] * (-2367.437) (-2352.617) [-2370.121] (-2343.999) -- 0:16:40
199000 -- (-2353.877) (-2378.262) (-2364.679) [-2371.307] * (-2357.473) (-2349.266) (-2374.082) [-2348.476] -- 0:16:42
200000 -- (-2369.605) (-2362.526) [-2361.602] (-2376.251) * (-2371.292) (-2356.657) [-2353.690] (-2356.674) -- 0:16:40
Average standard deviation of split frequencies: 0.015695
201000 -- (-2355.142) (-2362.478) (-2358.607) [-2362.617] * (-2364.486) (-2372.042) (-2365.380) [-2354.632] -- 0:16:37
202000 -- [-2348.315] (-2382.119) (-2371.932) (-2372.790) * [-2359.928] (-2372.532) (-2362.975) (-2369.901) -- 0:16:35
203000 -- [-2360.686] (-2375.591) (-2349.771) (-2381.372) * [-2360.667] (-2388.346) (-2355.001) (-2359.721) -- 0:16:37
204000 -- (-2363.341) (-2365.136) [-2356.367] (-2379.362) * (-2354.870) (-2371.113) (-2361.292) [-2358.300] -- 0:16:35
205000 -- (-2367.136) [-2355.550] (-2375.738) (-2374.963) * (-2369.858) [-2350.846] (-2385.551) (-2364.224) -- 0:16:32
Average standard deviation of split frequencies: 0.015189
206000 -- (-2363.694) [-2359.265] (-2376.356) (-2359.889) * (-2377.067) (-2363.584) [-2370.638] (-2359.465) -- 0:16:30
207000 -- (-2384.857) [-2365.145] (-2381.827) (-2374.004) * (-2375.716) [-2354.927] (-2364.184) (-2369.382) -- 0:16:32
208000 -- (-2366.382) (-2373.909) (-2365.343) [-2353.176] * (-2359.650) [-2342.285] (-2373.036) (-2370.492) -- 0:16:30
209000 -- (-2364.888) (-2373.230) (-2374.456) [-2350.841] * (-2365.316) (-2362.308) [-2350.090] (-2359.169) -- 0:16:27
210000 -- (-2370.398) (-2376.112) [-2355.877] (-2356.126) * (-2365.982) [-2363.121] (-2363.794) (-2377.689) -- 0:16:25
Average standard deviation of split frequencies: 0.014644
211000 -- [-2354.683] (-2362.731) (-2388.730) (-2366.993) * (-2367.055) (-2365.678) [-2360.471] (-2364.361) -- 0:16:27
212000 -- [-2349.171] (-2350.711) (-2375.506) (-2368.771) * (-2368.404) (-2371.453) [-2358.490] (-2374.747) -- 0:16:25
213000 -- [-2349.354] (-2362.389) (-2369.856) (-2359.950) * (-2362.950) (-2376.798) [-2357.704] (-2376.197) -- 0:16:22
214000 -- [-2375.340] (-2366.393) (-2365.887) (-2368.524) * (-2354.615) (-2380.646) [-2347.748] (-2375.655) -- 0:16:20
215000 -- (-2380.333) (-2373.472) [-2364.786] (-2367.652) * (-2379.662) (-2370.430) [-2356.981] (-2364.716) -- 0:16:22
Average standard deviation of split frequencies: 0.014518
216000 -- (-2376.468) [-2358.300] (-2365.989) (-2369.353) * [-2357.493] (-2353.128) (-2374.096) (-2373.955) -- 0:16:20
217000 -- (-2377.937) (-2352.545) [-2357.093] (-2370.016) * (-2353.974) (-2386.649) [-2359.490] (-2373.142) -- 0:16:17
218000 -- [-2366.743] (-2378.459) (-2360.876) (-2376.890) * (-2364.386) (-2365.949) [-2351.929] (-2365.989) -- 0:16:15
219000 -- [-2358.661] (-2380.851) (-2361.108) (-2368.374) * (-2365.619) (-2361.474) [-2358.257] (-2344.285) -- 0:16:17
220000 -- [-2348.761] (-2371.150) (-2373.388) (-2371.925) * (-2383.784) (-2375.401) [-2356.582] (-2352.885) -- 0:16:15
Average standard deviation of split frequencies: 0.014444
221000 -- (-2355.875) (-2357.644) (-2364.630) [-2365.256] * (-2372.411) (-2364.168) [-2366.276] (-2364.359) -- 0:16:12
222000 -- (-2359.690) [-2363.126] (-2358.608) (-2366.435) * (-2366.323) (-2369.107) [-2353.101] (-2367.351) -- 0:16:10
223000 -- [-2350.142] (-2364.660) (-2363.697) (-2378.293) * (-2357.733) (-2378.303) (-2383.289) [-2362.878] -- 0:16:08
224000 -- (-2350.679) [-2356.072] (-2370.289) (-2375.723) * (-2356.345) (-2373.032) (-2354.353) [-2383.366] -- 0:16:10
225000 -- (-2370.446) [-2356.911] (-2381.654) (-2363.734) * (-2368.109) (-2365.176) [-2367.565] (-2377.823) -- 0:16:07
Average standard deviation of split frequencies: 0.013653
226000 -- (-2364.929) (-2355.459) (-2386.408) [-2362.268] * (-2361.050) (-2369.432) (-2373.571) [-2357.738] -- 0:16:05
227000 -- (-2361.025) [-2362.773] (-2379.183) (-2373.051) * (-2369.114) (-2362.389) [-2361.182] (-2378.911) -- 0:16:03
228000 -- (-2361.807) (-2356.952) (-2383.687) [-2348.101] * (-2370.420) (-2369.914) (-2375.759) [-2362.456] -- 0:16:05
229000 -- (-2373.750) [-2348.565] (-2370.303) (-2353.115) * [-2348.559] (-2382.856) (-2369.248) (-2389.427) -- 0:16:02
230000 -- (-2358.564) (-2361.591) [-2358.555] (-2377.462) * (-2356.690) (-2365.218) [-2350.287] (-2372.399) -- 0:16:00
Average standard deviation of split frequencies: 0.013513
231000 -- (-2381.728) [-2355.008] (-2385.332) (-2384.423) * [-2356.580] (-2385.578) (-2364.180) (-2370.388) -- 0:15:58
232000 -- (-2363.683) (-2373.603) [-2356.202] (-2357.886) * (-2368.848) (-2368.471) [-2355.271] (-2370.590) -- 0:16:00
233000 -- (-2372.866) (-2379.090) [-2368.988] (-2356.040) * (-2364.445) (-2364.714) [-2354.094] (-2376.953) -- 0:15:57
234000 -- (-2367.995) [-2360.706] (-2375.874) (-2369.719) * (-2365.137) (-2356.417) [-2355.919] (-2367.313) -- 0:15:55
235000 -- [-2361.001] (-2367.081) (-2366.090) (-2360.356) * (-2356.898) (-2366.197) (-2367.755) [-2364.700] -- 0:15:53
Average standard deviation of split frequencies: 0.014566
236000 -- (-2379.390) (-2371.981) (-2369.747) [-2360.794] * [-2360.016] (-2366.209) (-2360.647) (-2377.455) -- 0:15:51
237000 -- [-2367.003] (-2367.646) (-2393.902) (-2361.011) * [-2359.138] (-2380.651) (-2375.176) (-2361.568) -- 0:15:52
238000 -- [-2377.592] (-2363.800) (-2370.644) (-2366.067) * (-2376.366) (-2362.127) (-2363.313) [-2351.802] -- 0:15:50
239000 -- (-2363.023) (-2374.402) [-2348.433] (-2379.579) * (-2362.478) (-2361.747) (-2372.572) [-2354.533] -- 0:15:48
240000 -- (-2372.321) (-2382.039) [-2361.184] (-2370.990) * [-2349.955] (-2364.391) (-2375.243) (-2355.929) -- 0:15:46
Average standard deviation of split frequencies: 0.014796
241000 -- (-2364.506) [-2360.994] (-2375.596) (-2354.595) * (-2357.068) (-2361.355) (-2365.810) [-2364.092] -- 0:15:47
242000 -- (-2366.399) (-2361.624) [-2365.431] (-2370.740) * (-2368.626) [-2366.107] (-2376.951) (-2369.342) -- 0:15:45
243000 -- [-2364.519] (-2367.298) (-2365.239) (-2370.266) * [-2360.586] (-2370.949) (-2365.004) (-2356.047) -- 0:15:43
244000 -- (-2352.780) [-2364.752] (-2369.884) (-2367.805) * [-2356.954] (-2365.822) (-2366.513) (-2351.834) -- 0:15:45
245000 -- [-2346.739] (-2361.845) (-2355.716) (-2369.009) * (-2362.941) (-2391.328) [-2361.070] (-2373.253) -- 0:15:42
Average standard deviation of split frequencies: 0.015185
246000 -- (-2362.342) [-2368.460] (-2342.463) (-2380.855) * (-2361.182) (-2372.673) (-2361.161) [-2362.541] -- 0:15:40
247000 -- [-2353.941] (-2368.875) (-2356.960) (-2373.480) * [-2359.978] (-2396.649) (-2371.670) (-2353.888) -- 0:15:38
248000 -- [-2359.466] (-2369.411) (-2358.413) (-2376.254) * (-2358.199) (-2376.348) (-2369.547) [-2355.071] -- 0:15:36
249000 -- (-2354.411) (-2376.095) [-2353.390] (-2357.756) * (-2368.221) (-2360.030) (-2372.143) [-2358.252] -- 0:15:37
250000 -- [-2364.512] (-2383.527) (-2375.006) (-2361.283) * (-2370.329) (-2355.315) [-2364.305] (-2357.476) -- 0:15:36
Average standard deviation of split frequencies: 0.014820
251000 -- (-2367.807) (-2377.345) (-2361.490) [-2357.463] * (-2374.578) [-2353.099] (-2352.522) (-2384.973) -- 0:15:34
252000 -- (-2371.675) (-2367.189) (-2361.756) [-2349.333] * (-2367.466) (-2372.636) [-2351.516] (-2368.902) -- 0:15:35
253000 -- (-2363.431) [-2356.352] (-2366.412) (-2357.816) * (-2364.029) (-2367.289) [-2349.091] (-2378.449) -- 0:15:33
254000 -- (-2356.903) (-2371.595) [-2354.183] (-2358.874) * [-2366.251] (-2362.441) (-2350.872) (-2374.367) -- 0:15:31
255000 -- [-2366.706] (-2367.990) (-2362.998) (-2365.045) * (-2382.858) [-2357.660] (-2362.866) (-2364.956) -- 0:15:29
Average standard deviation of split frequencies: 0.015468
256000 -- (-2352.374) (-2366.624) (-2377.174) [-2352.341] * (-2363.794) [-2364.727] (-2367.862) (-2362.816) -- 0:15:30
257000 -- [-2347.543] (-2366.105) (-2357.315) (-2357.884) * (-2352.351) (-2367.451) (-2364.543) [-2373.181] -- 0:15:28
258000 -- (-2375.403) (-2378.238) (-2360.387) [-2353.870] * (-2379.976) [-2355.405] (-2383.486) (-2361.010) -- 0:15:26
259000 -- [-2355.356] (-2390.544) (-2365.800) (-2361.638) * (-2375.439) (-2375.218) (-2372.824) [-2360.931] -- 0:15:24
260000 -- (-2366.318) (-2382.853) [-2350.445] (-2354.081) * (-2369.142) (-2356.821) (-2356.164) [-2351.491] -- 0:15:25
Average standard deviation of split frequencies: 0.015673
261000 -- (-2361.051) (-2362.525) (-2366.027) [-2362.305] * (-2370.067) (-2376.462) [-2362.591] (-2355.484) -- 0:15:23
262000 -- [-2352.618] (-2369.827) (-2361.278) (-2371.921) * (-2383.294) [-2358.425] (-2364.977) (-2375.828) -- 0:15:21
263000 -- (-2355.551) [-2385.298] (-2362.978) (-2371.552) * (-2367.318) (-2376.357) [-2363.561] (-2370.502) -- 0:15:19
264000 -- (-2374.919) (-2384.955) [-2353.402] (-2373.972) * (-2367.627) (-2368.251) [-2357.583] (-2366.093) -- 0:15:20
265000 -- (-2371.791) (-2358.881) [-2362.615] (-2365.669) * [-2365.505] (-2360.882) (-2360.456) (-2364.906) -- 0:15:18
Average standard deviation of split frequencies: 0.015205
266000 -- (-2375.084) [-2362.557] (-2374.775) (-2366.899) * (-2359.848) (-2394.526) [-2354.985] (-2360.946) -- 0:15:16
267000 -- [-2372.662] (-2369.289) (-2366.142) (-2372.554) * [-2361.219] (-2370.799) (-2352.201) (-2380.110) -- 0:15:14
268000 -- (-2359.954) (-2376.615) [-2370.170] (-2359.983) * [-2365.564] (-2376.646) (-2359.544) (-2372.854) -- 0:15:15
269000 -- [-2359.057] (-2360.969) (-2368.614) (-2350.570) * (-2365.727) (-2381.175) [-2359.714] (-2379.651) -- 0:15:13
270000 -- [-2357.438] (-2376.458) (-2362.268) (-2385.805) * (-2395.470) (-2357.557) [-2356.630] (-2372.226) -- 0:15:11
Average standard deviation of split frequencies: 0.014973
271000 -- [-2373.578] (-2368.725) (-2373.803) (-2386.803) * (-2370.977) [-2360.873] (-2373.763) (-2360.972) -- 0:15:09
272000 -- (-2362.483) (-2370.741) (-2374.225) [-2360.067] * (-2365.542) (-2377.875) [-2356.848] (-2353.467) -- 0:15:10
273000 -- (-2362.187) (-2368.541) (-2365.534) [-2372.665] * (-2373.785) (-2370.169) (-2354.535) [-2376.086] -- 0:15:08
274000 -- (-2357.808) [-2371.350] (-2393.322) (-2371.645) * (-2385.365) (-2380.271) (-2373.521) [-2354.508] -- 0:15:06
275000 -- (-2360.623) (-2372.075) [-2362.110] (-2365.578) * [-2357.002] (-2353.604) (-2376.352) (-2372.071) -- 0:15:04
Average standard deviation of split frequencies: 0.015010
276000 -- (-2365.462) (-2363.361) [-2366.212] (-2370.248) * [-2357.563] (-2363.349) (-2392.607) (-2364.965) -- 0:15:05
277000 -- (-2366.678) [-2353.662] (-2368.179) (-2375.528) * (-2360.193) (-2363.370) (-2365.845) [-2375.214] -- 0:15:03
278000 -- [-2361.581] (-2369.991) (-2366.169) (-2374.371) * (-2370.541) (-2360.263) (-2396.080) [-2354.693] -- 0:15:01
279000 -- (-2376.251) [-2359.026] (-2357.685) (-2365.423) * (-2373.899) (-2369.435) (-2363.628) [-2367.190] -- 0:14:59
280000 -- [-2355.536] (-2368.607) (-2359.550) (-2367.970) * (-2367.928) (-2360.357) [-2347.821] (-2364.084) -- 0:14:57
Average standard deviation of split frequencies: 0.014690
281000 -- (-2357.386) (-2357.581) [-2365.513] (-2380.520) * (-2356.823) (-2358.337) (-2366.168) [-2347.738] -- 0:14:58
282000 -- (-2382.764) (-2371.776) [-2353.928] (-2353.314) * (-2367.915) (-2356.943) (-2361.714) [-2352.980] -- 0:14:56
283000 -- (-2376.978) [-2353.881] (-2358.377) (-2354.601) * (-2366.254) [-2360.174] (-2358.522) (-2354.396) -- 0:14:54
284000 -- (-2378.402) [-2352.601] (-2363.101) (-2365.604) * [-2374.925] (-2379.958) (-2375.216) (-2371.981) -- 0:14:52
285000 -- (-2371.267) (-2370.008) [-2355.808] (-2369.584) * (-2368.108) [-2366.097] (-2351.795) (-2382.898) -- 0:14:53
Average standard deviation of split frequencies: 0.014180
286000 -- (-2379.472) (-2372.554) [-2364.162] (-2378.450) * (-2372.358) (-2362.543) (-2375.690) [-2376.193] -- 0:14:51
287000 -- [-2354.676] (-2353.903) (-2355.243) (-2370.915) * (-2372.982) [-2354.639] (-2365.398) (-2383.541) -- 0:14:49
288000 -- (-2362.986) [-2357.594] (-2381.196) (-2365.837) * [-2360.658] (-2348.673) (-2367.383) (-2372.751) -- 0:14:47
289000 -- [-2350.056] (-2366.071) (-2362.646) (-2359.151) * (-2360.237) [-2358.545] (-2374.975) (-2373.617) -- 0:14:48
290000 -- (-2360.672) (-2363.854) (-2378.925) [-2356.769] * (-2356.603) (-2370.857) [-2351.183] (-2390.693) -- 0:14:46
Average standard deviation of split frequencies: 0.014179
291000 -- (-2351.598) (-2375.685) [-2363.202] (-2364.939) * (-2380.817) (-2364.756) [-2355.047] (-2368.289) -- 0:14:44
292000 -- (-2349.446) (-2376.804) (-2354.300) [-2366.845] * (-2364.777) (-2369.949) (-2353.450) [-2357.403] -- 0:14:42
293000 -- (-2372.096) [-2357.490] (-2357.051) (-2369.702) * (-2355.029) (-2366.034) (-2371.960) [-2369.269] -- 0:14:43
294000 -- (-2374.629) (-2369.937) (-2365.383) [-2364.325] * [-2359.138] (-2361.486) (-2372.537) (-2363.470) -- 0:14:41
295000 -- (-2366.788) (-2373.085) (-2371.805) [-2370.235] * [-2346.792] (-2359.768) (-2369.540) (-2377.505) -- 0:14:39
Average standard deviation of split frequencies: 0.013561
296000 -- (-2371.369) (-2374.008) (-2369.882) [-2361.832] * (-2381.091) (-2355.252) [-2363.912] (-2371.236) -- 0:14:37
297000 -- (-2387.275) (-2363.699) (-2357.115) [-2355.975] * (-2404.913) [-2358.823] (-2365.958) (-2361.261) -- 0:14:35
298000 -- (-2372.334) [-2360.145] (-2366.275) (-2374.623) * (-2379.539) (-2369.150) [-2361.863] (-2369.478) -- 0:14:36
299000 -- (-2356.796) [-2359.049] (-2369.136) (-2358.972) * (-2391.267) (-2366.866) (-2356.525) [-2354.106] -- 0:14:34
300000 -- (-2355.499) (-2361.184) (-2365.523) [-2365.197] * [-2363.700] (-2365.707) (-2365.203) (-2366.423) -- 0:14:32
Average standard deviation of split frequencies: 0.013866
301000 -- [-2371.290] (-2355.702) (-2365.341) (-2373.764) * (-2368.350) (-2369.590) (-2354.710) [-2351.112] -- 0:14:30
302000 -- (-2366.789) (-2350.752) [-2362.498] (-2375.414) * (-2364.592) [-2352.024] (-2356.538) (-2354.077) -- 0:14:31
303000 -- (-2359.421) [-2363.377] (-2388.417) (-2363.636) * (-2390.087) (-2360.129) [-2369.685] (-2370.209) -- 0:14:29
304000 -- [-2352.366] (-2359.448) (-2366.566) (-2364.518) * (-2364.775) [-2364.860] (-2376.458) (-2353.479) -- 0:14:27
305000 -- (-2372.069) (-2357.672) [-2355.604] (-2365.608) * (-2357.953) [-2363.580] (-2372.154) (-2358.914) -- 0:14:25
Average standard deviation of split frequencies: 0.013152
306000 -- (-2375.271) [-2354.355] (-2356.642) (-2362.435) * (-2361.076) (-2361.044) (-2363.428) [-2354.193] -- 0:14:24
307000 -- (-2379.408) (-2361.779) [-2356.605] (-2355.839) * (-2359.813) (-2363.387) (-2363.904) [-2367.083] -- 0:14:24
308000 -- (-2371.742) (-2359.845) [-2348.797] (-2373.441) * [-2361.286] (-2345.698) (-2381.863) (-2365.017) -- 0:14:22
309000 -- (-2367.430) (-2368.217) [-2353.266] (-2365.251) * (-2361.077) (-2371.139) (-2354.134) [-2356.392] -- 0:14:20
310000 -- (-2363.968) (-2357.408) (-2367.863) [-2351.607] * (-2388.923) (-2376.870) (-2367.907) [-2352.507] -- 0:14:21
Average standard deviation of split frequencies: 0.012415
311000 -- (-2369.575) [-2371.603] (-2366.876) (-2369.792) * (-2365.438) (-2362.885) (-2357.709) [-2348.940] -- 0:14:19
312000 -- (-2369.984) (-2379.938) (-2371.713) [-2354.750] * (-2375.050) [-2358.652] (-2373.823) (-2350.509) -- 0:14:17
313000 -- (-2370.156) [-2351.468] (-2374.254) (-2379.971) * (-2367.859) (-2380.699) [-2362.866] (-2347.078) -- 0:14:16
314000 -- (-2377.627) [-2349.135] (-2370.724) (-2374.807) * [-2363.942] (-2369.839) (-2367.401) (-2354.507) -- 0:14:16
315000 -- (-2366.818) [-2355.215] (-2373.619) (-2362.537) * (-2357.496) [-2376.490] (-2378.087) (-2359.110) -- 0:14:14
Average standard deviation of split frequencies: 0.012680
316000 -- (-2360.330) [-2356.697] (-2368.503) (-2382.457) * (-2370.739) (-2354.032) [-2361.624] (-2365.968) -- 0:14:12
317000 -- (-2377.824) [-2360.809] (-2365.267) (-2377.643) * (-2384.994) (-2372.716) [-2377.253] (-2363.562) -- 0:14:11
318000 -- (-2362.532) (-2362.789) [-2354.225] (-2361.774) * (-2366.566) (-2378.815) [-2357.546] (-2371.315) -- 0:14:11
319000 -- (-2367.124) (-2371.762) [-2345.708] (-2375.545) * (-2366.955) (-2360.195) (-2379.071) [-2366.510] -- 0:14:09
320000 -- (-2359.630) (-2366.719) [-2349.424] (-2380.806) * (-2365.573) [-2358.283] (-2370.837) (-2370.490) -- 0:14:07
Average standard deviation of split frequencies: 0.013072
321000 -- (-2367.255) (-2364.823) [-2351.099] (-2373.917) * (-2363.100) [-2363.747] (-2364.647) (-2373.310) -- 0:14:06
322000 -- (-2363.109) [-2357.941] (-2358.595) (-2361.410) * [-2355.040] (-2369.180) (-2363.186) (-2389.117) -- 0:14:06
323000 -- (-2369.142) (-2358.716) (-2370.470) [-2358.893] * (-2367.843) [-2360.288] (-2370.087) (-2378.500) -- 0:14:04
324000 -- (-2361.925) (-2368.440) (-2388.484) [-2359.567] * [-2362.572] (-2367.964) (-2370.910) (-2371.607) -- 0:14:02
325000 -- (-2377.796) [-2354.618] (-2369.172) (-2364.874) * [-2356.720] (-2376.219) (-2381.260) (-2354.330) -- 0:14:01
Average standard deviation of split frequencies: 0.012859
326000 -- (-2366.167) (-2365.385) [-2343.040] (-2361.377) * (-2371.776) [-2355.726] (-2395.642) (-2362.079) -- 0:14:01
327000 -- (-2368.920) (-2381.500) (-2357.110) [-2367.193] * (-2368.756) [-2345.530] (-2363.704) (-2355.594) -- 0:13:59
328000 -- [-2359.630] (-2378.541) (-2357.133) (-2368.873) * (-2378.254) (-2357.851) [-2364.713] (-2369.976) -- 0:13:57
329000 -- (-2354.226) (-2384.679) (-2362.303) [-2375.580] * (-2361.473) (-2362.241) [-2358.371] (-2364.750) -- 0:13:56
330000 -- [-2351.837] (-2379.491) (-2366.388) (-2363.038) * (-2374.248) (-2363.776) [-2363.495] (-2360.708) -- 0:13:56
Average standard deviation of split frequencies: 0.012291
331000 -- (-2358.371) (-2367.870) (-2364.428) [-2359.129] * (-2377.905) (-2370.770) (-2359.116) [-2355.263] -- 0:13:54
332000 -- [-2358.344] (-2355.590) (-2364.112) (-2376.805) * (-2370.522) (-2370.938) [-2355.499] (-2372.653) -- 0:13:52
333000 -- [-2358.696] (-2359.707) (-2373.858) (-2365.549) * (-2371.442) (-2357.652) [-2365.296] (-2359.066) -- 0:13:51
334000 -- (-2366.296) (-2376.312) (-2367.905) [-2362.587] * (-2367.381) (-2361.920) [-2361.766] (-2350.320) -- 0:13:51
335000 -- (-2361.082) (-2367.649) [-2362.501] (-2368.602) * (-2377.345) (-2373.423) [-2372.785] (-2354.988) -- 0:13:49
Average standard deviation of split frequencies: 0.012418
336000 -- (-2371.672) [-2360.358] (-2382.418) (-2362.470) * [-2355.987] (-2371.633) (-2371.540) (-2372.093) -- 0:13:48
337000 -- [-2363.859] (-2356.110) (-2366.688) (-2373.414) * [-2349.802] (-2376.602) (-2371.103) (-2370.891) -- 0:13:46
338000 -- (-2359.644) [-2353.810] (-2367.270) (-2374.115) * (-2363.303) (-2373.009) (-2368.479) [-2353.761] -- 0:13:46
339000 -- (-2365.655) [-2350.174] (-2375.743) (-2378.985) * (-2366.792) (-2373.731) [-2358.481] (-2361.675) -- 0:13:44
340000 -- (-2366.702) [-2361.834] (-2359.218) (-2366.104) * [-2357.732] (-2375.619) (-2370.052) (-2366.943) -- 0:13:43
Average standard deviation of split frequencies: 0.012123
341000 -- [-2363.588] (-2353.484) (-2365.021) (-2369.126) * [-2358.896] (-2371.732) (-2380.398) (-2350.791) -- 0:13:41
342000 -- (-2361.964) (-2367.770) [-2363.016] (-2386.515) * (-2363.182) [-2369.298] (-2375.129) (-2361.968) -- 0:13:41
343000 -- [-2353.800] (-2370.940) (-2363.841) (-2374.236) * [-2354.085] (-2369.978) (-2383.343) (-2352.679) -- 0:13:39
344000 -- (-2368.194) (-2372.422) [-2377.672] (-2371.636) * (-2359.095) (-2363.745) [-2358.417] (-2367.532) -- 0:13:38
345000 -- (-2367.591) [-2370.960] (-2377.142) (-2396.194) * (-2367.600) (-2368.383) (-2368.970) [-2363.458] -- 0:13:36
Average standard deviation of split frequencies: 0.012345
346000 -- [-2355.686] (-2361.658) (-2368.664) (-2381.799) * (-2370.381) (-2370.678) (-2371.900) [-2361.324] -- 0:13:36
347000 -- [-2347.051] (-2371.754) (-2355.781) (-2367.379) * [-2354.453] (-2372.547) (-2371.973) (-2380.991) -- 0:13:34
348000 -- (-2379.894) [-2363.225] (-2363.899) (-2351.173) * (-2373.208) (-2351.231) [-2360.911] (-2366.539) -- 0:13:33
349000 -- (-2378.899) [-2368.127] (-2367.765) (-2351.870) * [-2368.365] (-2354.233) (-2372.476) (-2377.467) -- 0:13:33
350000 -- (-2370.496) [-2357.254] (-2351.576) (-2367.900) * (-2357.510) (-2377.458) [-2361.630] (-2378.554) -- 0:13:31
Average standard deviation of split frequencies: 0.012404
351000 -- (-2359.736) (-2359.301) (-2355.226) [-2356.950] * (-2353.766) [-2353.209] (-2388.674) (-2359.867) -- 0:13:29
352000 -- (-2363.192) (-2356.109) [-2353.906] (-2392.615) * [-2366.649] (-2364.512) (-2369.648) (-2360.484) -- 0:13:28
353000 -- [-2353.369] (-2367.142) (-2371.452) (-2371.998) * [-2358.226] (-2357.532) (-2377.501) (-2355.613) -- 0:13:26
354000 -- (-2352.642) [-2351.487] (-2356.874) (-2367.948) * (-2361.167) (-2380.571) (-2363.620) [-2345.859] -- 0:13:26
355000 -- [-2359.410] (-2367.588) (-2360.491) (-2369.758) * (-2368.266) [-2353.600] (-2358.400) (-2354.797) -- 0:13:24
Average standard deviation of split frequencies: 0.012680
356000 -- (-2355.345) [-2359.779] (-2363.895) (-2377.997) * (-2362.326) (-2367.377) [-2357.110] (-2369.966) -- 0:13:23
357000 -- (-2353.217) (-2350.391) [-2361.860] (-2354.647) * [-2355.600] (-2365.705) (-2373.030) (-2378.237) -- 0:13:21
358000 -- (-2370.661) [-2361.224] (-2371.871) (-2367.459) * (-2356.175) (-2363.686) (-2365.290) [-2358.116] -- 0:13:21
359000 -- (-2365.530) (-2353.124) (-2377.757) [-2355.532] * (-2361.917) (-2370.794) (-2370.280) [-2349.334] -- 0:13:19
360000 -- (-2367.602) [-2356.751] (-2361.345) (-2353.794) * (-2357.327) (-2366.885) (-2368.408) [-2348.044] -- 0:13:18
Average standard deviation of split frequencies: 0.012674
361000 -- (-2363.542) (-2366.221) (-2364.463) [-2358.617] * [-2361.316] (-2365.533) (-2361.116) (-2376.473) -- 0:13:16
362000 -- (-2380.397) [-2355.307] (-2370.674) (-2371.454) * [-2367.364] (-2365.426) (-2372.350) (-2384.530) -- 0:13:16
363000 -- (-2368.932) [-2357.836] (-2364.198) (-2358.720) * [-2358.251] (-2361.886) (-2389.628) (-2381.876) -- 0:13:14
364000 -- [-2359.050] (-2359.720) (-2382.781) (-2359.383) * [-2363.274] (-2361.705) (-2367.845) (-2369.462) -- 0:13:13
365000 -- (-2375.499) (-2353.960) (-2357.249) [-2366.236] * (-2354.169) [-2364.155] (-2372.069) (-2373.045) -- 0:13:11
Average standard deviation of split frequencies: 0.012782
366000 -- (-2371.467) [-2351.315] (-2379.482) (-2356.954) * (-2369.053) [-2358.745] (-2373.652) (-2369.365) -- 0:13:09
367000 -- (-2370.044) (-2361.958) (-2380.937) [-2352.874] * [-2356.973] (-2362.789) (-2357.633) (-2372.523) -- 0:13:09
368000 -- (-2372.624) (-2362.380) (-2358.290) [-2365.482] * (-2367.438) [-2358.042] (-2359.204) (-2355.042) -- 0:13:08
369000 -- [-2364.632] (-2364.678) (-2381.211) (-2374.262) * (-2371.696) (-2378.390) (-2362.523) [-2346.684] -- 0:13:06
370000 -- (-2373.307) [-2355.485] (-2370.038) (-2363.170) * (-2366.355) (-2368.216) (-2355.006) [-2353.824] -- 0:13:04
Average standard deviation of split frequencies: 0.011970
371000 -- (-2379.251) [-2354.315] (-2381.783) (-2362.099) * (-2361.286) [-2372.755] (-2368.190) (-2364.006) -- 0:13:04
372000 -- (-2376.193) (-2373.134) [-2359.992] (-2381.628) * (-2375.184) (-2348.479) [-2361.241] (-2384.484) -- 0:13:03
373000 -- [-2355.641] (-2368.206) (-2366.218) (-2381.235) * (-2377.324) [-2344.333] (-2373.679) (-2373.072) -- 0:13:01
374000 -- [-2343.849] (-2370.131) (-2365.238) (-2387.946) * (-2354.423) [-2354.010] (-2366.385) (-2376.070) -- 0:12:59
375000 -- (-2360.545) (-2370.417) (-2362.418) [-2368.993] * (-2372.981) [-2346.486] (-2369.154) (-2351.491) -- 0:12:58
Average standard deviation of split frequencies: 0.011246
376000 -- (-2365.681) (-2386.669) [-2351.073] (-2364.007) * (-2371.664) (-2367.593) (-2355.933) [-2351.396] -- 0:12:58
377000 -- (-2357.304) (-2374.909) [-2355.863] (-2381.379) * [-2361.422] (-2393.182) (-2360.080) (-2356.848) -- 0:12:56
378000 -- (-2374.260) (-2358.238) [-2358.607] (-2379.668) * (-2355.904) [-2362.407] (-2371.793) (-2362.778) -- 0:12:55
379000 -- (-2377.722) [-2345.674] (-2357.017) (-2359.041) * (-2370.441) (-2373.225) [-2361.052] (-2362.125) -- 0:12:53
380000 -- (-2377.840) (-2362.882) (-2347.308) [-2364.023] * [-2356.979] (-2366.729) (-2363.752) (-2362.980) -- 0:12:53
Average standard deviation of split frequencies: 0.011416
381000 -- (-2385.655) (-2356.394) (-2360.572) [-2353.261] * [-2353.018] (-2366.148) (-2356.714) (-2366.946) -- 0:12:51
382000 -- (-2375.521) (-2366.757) [-2362.337] (-2375.054) * [-2354.687] (-2355.933) (-2369.785) (-2375.890) -- 0:12:50
383000 -- (-2360.809) (-2376.064) (-2365.547) [-2352.361] * (-2367.091) (-2377.172) [-2359.615] (-2385.100) -- 0:12:48
384000 -- (-2362.391) (-2357.669) [-2356.239] (-2364.571) * (-2355.811) [-2352.863] (-2382.569) (-2370.544) -- 0:12:48
385000 -- (-2357.115) (-2396.726) (-2370.359) [-2364.671] * (-2370.149) [-2356.273] (-2387.389) (-2376.578) -- 0:12:46
Average standard deviation of split frequencies: 0.010621
386000 -- (-2381.377) (-2385.557) [-2357.233] (-2348.088) * (-2366.649) [-2361.577] (-2358.761) (-2348.933) -- 0:12:45
387000 -- (-2368.872) [-2356.783] (-2373.088) (-2368.066) * (-2351.773) (-2375.157) (-2380.250) [-2346.615] -- 0:12:45
388000 -- (-2368.475) (-2376.370) [-2362.293] (-2404.261) * (-2357.045) [-2364.885] (-2373.075) (-2370.175) -- 0:12:43
389000 -- (-2366.517) (-2385.809) [-2350.716] (-2381.636) * (-2377.701) [-2357.841] (-2368.237) (-2365.802) -- 0:12:41
390000 -- (-2369.489) (-2379.684) [-2361.599] (-2367.559) * (-2367.135) (-2382.403) (-2356.737) [-2352.436] -- 0:12:40
Average standard deviation of split frequencies: 0.010641
391000 -- (-2366.785) (-2382.098) (-2356.292) [-2363.281] * (-2363.279) (-2367.107) (-2361.759) [-2357.747] -- 0:12:40
392000 -- (-2361.056) (-2368.238) [-2350.769] (-2364.110) * (-2365.150) (-2368.462) [-2362.587] (-2359.345) -- 0:12:38
393000 -- (-2366.381) (-2389.773) [-2367.239] (-2361.819) * (-2382.878) (-2365.268) [-2367.261] (-2383.538) -- 0:12:36
394000 -- (-2371.173) (-2365.767) [-2367.429] (-2371.854) * (-2362.136) [-2373.947] (-2381.467) (-2366.262) -- 0:12:35
395000 -- (-2362.473) (-2366.482) (-2374.740) [-2362.065] * (-2367.092) (-2375.719) (-2380.034) [-2369.955] -- 0:12:35
Average standard deviation of split frequencies: 0.010621
396000 -- (-2369.867) (-2365.223) [-2363.905] (-2352.322) * (-2358.587) (-2387.017) (-2375.759) [-2356.980] -- 0:12:33
397000 -- (-2357.072) [-2360.615] (-2373.033) (-2360.752) * (-2371.835) (-2375.258) [-2366.708] (-2376.134) -- 0:12:31
398000 -- (-2353.928) [-2364.978] (-2370.244) (-2367.657) * (-2358.539) (-2371.726) (-2372.043) [-2361.500] -- 0:12:30
399000 -- [-2353.658] (-2360.660) (-2379.161) (-2362.582) * (-2375.345) (-2368.596) (-2366.268) [-2361.729] -- 0:12:30
400000 -- (-2376.545) (-2371.528) [-2369.893] (-2363.402) * (-2366.359) [-2362.861] (-2368.629) (-2374.930) -- 0:12:28
Average standard deviation of split frequencies: 0.010535
401000 -- (-2369.213) (-2369.327) (-2372.382) [-2376.666] * (-2367.747) (-2379.137) (-2352.655) [-2358.879] -- 0:12:26
402000 -- (-2365.260) (-2368.580) [-2353.881] (-2361.183) * (-2374.865) (-2388.479) (-2373.370) [-2350.753] -- 0:12:25
403000 -- (-2356.466) [-2366.479] (-2350.449) (-2376.208) * (-2371.185) (-2365.439) (-2378.777) [-2360.870] -- 0:12:25
404000 -- (-2379.817) (-2373.645) [-2353.893] (-2359.034) * (-2364.553) (-2347.635) [-2364.417] (-2360.467) -- 0:12:23
405000 -- (-2353.578) (-2375.420) (-2370.637) [-2354.907] * (-2376.109) (-2364.313) (-2372.334) [-2360.287] -- 0:12:21
Average standard deviation of split frequencies: 0.010242
406000 -- (-2358.920) [-2355.779] (-2379.720) (-2368.356) * (-2354.644) [-2355.387] (-2372.015) (-2376.099) -- 0:12:21
407000 -- [-2357.574] (-2357.920) (-2362.507) (-2379.688) * (-2359.405) (-2366.642) (-2375.229) [-2350.141] -- 0:12:20
408000 -- (-2375.820) [-2349.264] (-2375.425) (-2388.082) * (-2375.719) (-2380.772) [-2348.140] (-2370.152) -- 0:12:18
409000 -- [-2361.845] (-2372.138) (-2371.172) (-2385.148) * [-2360.206] (-2371.927) (-2348.875) (-2370.791) -- 0:12:16
410000 -- [-2356.352] (-2365.543) (-2363.118) (-2359.741) * (-2369.184) (-2384.492) [-2364.182] (-2364.348) -- 0:12:16
Average standard deviation of split frequencies: 0.011009
411000 -- [-2346.263] (-2367.689) (-2376.496) (-2359.909) * [-2353.520] (-2367.154) (-2376.509) (-2371.007) -- 0:12:15
412000 -- (-2356.907) (-2361.623) (-2371.513) [-2364.283] * (-2377.772) (-2360.750) [-2360.611] (-2371.556) -- 0:12:13
413000 -- (-2361.176) (-2365.979) (-2387.176) [-2373.172] * (-2389.730) (-2360.316) [-2363.054] (-2368.271) -- 0:12:11
414000 -- (-2360.519) [-2344.356] (-2366.215) (-2365.275) * (-2377.691) (-2365.662) [-2355.063] (-2370.264) -- 0:12:11
415000 -- (-2359.759) (-2357.667) (-2362.434) [-2357.614] * (-2384.818) (-2364.404) [-2361.251] (-2356.391) -- 0:12:10
Average standard deviation of split frequencies: 0.011383
416000 -- (-2364.236) (-2368.365) (-2370.824) [-2347.171] * [-2362.470] (-2367.180) (-2369.897) (-2366.888) -- 0:12:08
417000 -- (-2363.148) [-2357.943] (-2355.818) (-2354.980) * (-2353.382) (-2375.891) (-2369.761) [-2354.271] -- 0:12:07
418000 -- (-2380.567) (-2371.336) [-2361.007] (-2366.593) * [-2357.370] (-2362.823) (-2363.232) (-2365.332) -- 0:12:06
419000 -- (-2367.680) [-2361.946] (-2385.082) (-2377.781) * (-2361.989) (-2381.042) [-2368.817] (-2381.676) -- 0:12:05
420000 -- [-2364.412] (-2362.832) (-2389.545) (-2378.168) * (-2372.243) (-2380.115) [-2362.747] (-2377.533) -- 0:12:03
Average standard deviation of split frequencies: 0.011359
421000 -- [-2350.931] (-2361.433) (-2380.207) (-2371.513) * (-2353.659) (-2383.328) [-2354.542] (-2367.962) -- 0:12:02
422000 -- (-2369.046) (-2378.233) (-2357.608) [-2362.325] * (-2367.265) (-2366.426) (-2379.034) [-2363.913] -- 0:12:00
423000 -- (-2372.475) (-2366.642) (-2374.198) [-2359.810] * [-2362.688] (-2352.110) (-2356.014) (-2382.116) -- 0:12:00
424000 -- (-2371.177) (-2372.233) [-2352.719] (-2362.710) * (-2365.740) [-2365.229] (-2384.094) (-2365.852) -- 0:11:58
425000 -- (-2372.981) (-2358.013) (-2366.726) [-2346.676] * (-2367.651) (-2370.857) [-2352.815] (-2385.525) -- 0:11:57
Average standard deviation of split frequencies: 0.011611
426000 -- (-2363.439) (-2358.779) (-2374.133) [-2356.127] * (-2365.636) [-2371.737] (-2359.175) (-2370.896) -- 0:11:55
427000 -- (-2368.287) [-2359.229] (-2381.409) (-2359.007) * (-2362.936) [-2382.337] (-2361.516) (-2381.066) -- 0:11:55
428000 -- (-2363.046) (-2365.083) (-2378.564) [-2352.920] * (-2358.181) (-2369.378) [-2360.289] (-2363.196) -- 0:11:53
429000 -- (-2383.943) (-2353.094) [-2361.779] (-2351.891) * (-2365.085) (-2365.967) (-2358.065) [-2354.543] -- 0:11:52
430000 -- [-2361.505] (-2347.927) (-2370.157) (-2356.583) * (-2352.385) (-2375.977) (-2374.639) [-2360.061] -- 0:11:50
Average standard deviation of split frequencies: 0.010846
431000 -- (-2373.896) (-2375.312) [-2365.017] (-2357.835) * (-2354.644) (-2355.168) (-2366.039) [-2362.436] -- 0:11:50
432000 -- (-2373.966) (-2362.255) (-2368.745) [-2349.311] * [-2351.562] (-2365.692) (-2377.138) (-2374.854) -- 0:11:48
433000 -- (-2375.412) [-2380.389] (-2362.320) (-2355.956) * (-2353.847) [-2361.926] (-2377.491) (-2368.078) -- 0:11:47
434000 -- [-2360.146] (-2380.741) (-2377.606) (-2369.420) * (-2366.881) [-2346.718] (-2382.677) (-2374.163) -- 0:11:45
435000 -- [-2354.864] (-2366.844) (-2371.687) (-2368.441) * (-2353.506) [-2360.703] (-2377.712) (-2357.478) -- 0:11:43
Average standard deviation of split frequencies: 0.011189
436000 -- (-2363.424) [-2369.357] (-2365.414) (-2364.698) * [-2347.250] (-2369.836) (-2377.323) (-2363.290) -- 0:11:43
437000 -- [-2357.017] (-2369.521) (-2366.994) (-2373.849) * [-2370.308] (-2367.528) (-2375.291) (-2371.263) -- 0:11:42
438000 -- [-2359.720] (-2371.474) (-2359.585) (-2370.754) * (-2367.683) (-2379.802) [-2368.306] (-2365.819) -- 0:11:40
439000 -- [-2359.236] (-2367.514) (-2368.937) (-2359.535) * [-2349.780] (-2369.085) (-2356.596) (-2369.110) -- 0:11:39
440000 -- (-2365.688) [-2353.144] (-2373.754) (-2382.143) * (-2354.267) [-2356.951] (-2376.790) (-2366.044) -- 0:11:38
Average standard deviation of split frequencies: 0.011411
441000 -- (-2367.838) (-2370.770) (-2369.894) [-2360.627] * (-2360.773) [-2349.293] (-2373.886) (-2357.149) -- 0:11:37
442000 -- (-2361.206) (-2382.724) [-2358.646] (-2367.342) * (-2373.216) (-2372.070) (-2374.884) [-2365.605] -- 0:11:35
443000 -- (-2367.087) (-2365.411) (-2358.757) [-2352.223] * (-2384.523) (-2363.377) (-2385.641) [-2362.211] -- 0:11:34
444000 -- (-2367.034) [-2351.085] (-2359.530) (-2371.919) * (-2394.872) [-2353.962] (-2380.867) (-2357.262) -- 0:11:33
445000 -- (-2365.209) (-2368.774) (-2373.214) [-2354.626] * [-2365.137] (-2375.211) (-2380.610) (-2375.327) -- 0:11:32
Average standard deviation of split frequencies: 0.011248
446000 -- (-2367.975) (-2358.526) (-2366.508) [-2348.617] * [-2362.232] (-2357.565) (-2361.298) (-2376.941) -- 0:11:30
447000 -- (-2368.427) [-2343.078] (-2376.183) (-2367.677) * (-2376.593) [-2358.306] (-2362.154) (-2367.568) -- 0:11:29
448000 -- (-2371.993) [-2346.347] (-2349.671) (-2377.119) * (-2360.458) (-2364.799) (-2371.234) [-2353.170] -- 0:11:27
449000 -- (-2370.482) [-2355.649] (-2368.977) (-2355.898) * (-2360.908) (-2357.162) [-2349.022] (-2354.076) -- 0:11:27
450000 -- (-2355.045) (-2371.186) (-2371.447) [-2345.724] * (-2371.287) (-2356.917) (-2367.472) [-2352.881] -- 0:11:25
Average standard deviation of split frequencies: 0.010741
451000 -- [-2350.595] (-2372.709) (-2371.321) (-2352.072) * (-2369.725) (-2355.107) [-2351.293] (-2360.088) -- 0:11:24
452000 -- (-2349.994) [-2354.441] (-2360.775) (-2375.570) * (-2359.881) (-2363.207) [-2358.741] (-2368.431) -- 0:11:23
453000 -- [-2356.206] (-2369.688) (-2370.952) (-2380.846) * (-2362.775) (-2352.542) [-2362.998] (-2379.308) -- 0:11:22
454000 -- [-2354.210] (-2365.115) (-2364.508) (-2395.279) * (-2374.642) [-2356.147] (-2367.823) (-2390.992) -- 0:11:20
455000 -- (-2357.895) (-2388.989) [-2351.267] (-2385.528) * (-2371.359) (-2364.097) (-2364.924) [-2371.726] -- 0:11:19
Average standard deviation of split frequencies: 0.010137
456000 -- [-2370.789] (-2372.414) (-2362.867) (-2362.162) * [-2366.840] (-2372.042) (-2388.742) (-2374.334) -- 0:11:18
457000 -- (-2364.081) (-2365.644) (-2377.121) [-2366.169] * (-2378.912) (-2379.661) (-2372.231) [-2363.716] -- 0:11:17
458000 -- (-2387.485) (-2369.494) [-2365.371] (-2360.565) * (-2380.681) (-2370.487) (-2380.058) [-2363.793] -- 0:11:15
459000 -- [-2364.447] (-2361.384) (-2370.717) (-2365.513) * (-2364.273) [-2358.207] (-2372.731) (-2366.144) -- 0:11:14
460000 -- (-2368.455) [-2374.094] (-2363.551) (-2385.628) * (-2367.885) [-2356.803] (-2378.312) (-2355.696) -- 0:11:13
Average standard deviation of split frequencies: 0.010311
461000 -- (-2366.492) (-2391.608) (-2355.891) [-2368.245] * (-2374.952) (-2372.008) [-2363.115] (-2361.131) -- 0:11:12
462000 -- (-2366.911) (-2381.492) [-2357.563] (-2359.677) * (-2371.423) (-2362.429) [-2364.363] (-2365.595) -- 0:11:10
463000 -- (-2358.987) (-2376.080) (-2372.606) [-2347.675] * (-2382.726) [-2359.941] (-2357.695) (-2376.517) -- 0:11:09
464000 -- [-2348.032] (-2388.711) (-2374.937) (-2375.597) * (-2364.487) [-2352.222] (-2383.672) (-2350.890) -- 0:11:08
465000 -- [-2354.789] (-2368.742) (-2351.982) (-2367.349) * [-2363.608] (-2366.926) (-2390.428) (-2365.688) -- 0:11:07
Average standard deviation of split frequencies: 0.010239
466000 -- (-2369.211) (-2391.097) [-2356.919] (-2347.176) * [-2360.363] (-2392.952) (-2362.399) (-2360.362) -- 0:11:05
467000 -- (-2373.593) [-2362.229] (-2366.519) (-2361.165) * (-2369.839) (-2383.083) (-2358.263) [-2348.784] -- 0:11:05
468000 -- (-2377.419) [-2360.793] (-2362.051) (-2364.697) * (-2364.474) [-2371.637] (-2372.636) (-2361.490) -- 0:11:03
469000 -- (-2364.123) (-2353.401) [-2357.264] (-2361.291) * (-2371.368) (-2375.705) (-2383.999) [-2352.449] -- 0:11:02
470000 -- (-2371.250) [-2349.097] (-2369.766) (-2366.195) * (-2384.521) (-2365.891) (-2360.011) [-2367.572] -- 0:11:00
Average standard deviation of split frequencies: 0.010733
471000 -- (-2372.844) [-2350.648] (-2365.304) (-2375.768) * (-2375.888) (-2360.791) (-2361.779) [-2364.715] -- 0:11:00
472000 -- [-2354.954] (-2339.718) (-2371.094) (-2380.567) * [-2370.748] (-2362.576) (-2371.615) (-2372.863) -- 0:10:58
473000 -- (-2366.075) [-2352.363] (-2369.554) (-2370.385) * (-2371.192) [-2365.296] (-2366.559) (-2364.360) -- 0:10:57
474000 -- (-2375.201) (-2375.250) (-2365.907) [-2357.517] * (-2369.221) [-2359.372] (-2362.431) (-2370.990) -- 0:10:55
475000 -- (-2383.921) [-2362.648] (-2361.754) (-2365.513) * (-2362.643) [-2360.017] (-2383.141) (-2363.113) -- 0:10:55
Average standard deviation of split frequencies: 0.011219
476000 -- (-2359.988) (-2359.329) [-2361.450] (-2384.309) * (-2360.871) [-2349.543] (-2364.658) (-2379.834) -- 0:10:53
477000 -- [-2354.205] (-2370.338) (-2371.496) (-2375.197) * (-2361.741) [-2348.958] (-2352.284) (-2381.128) -- 0:10:52
478000 -- (-2354.243) (-2366.472) (-2355.675) [-2355.318] * [-2354.997] (-2350.418) (-2373.394) (-2373.912) -- 0:10:50
479000 -- (-2372.091) (-2367.705) [-2362.136] (-2353.659) * (-2356.575) [-2350.421] (-2367.846) (-2367.344) -- 0:10:50
480000 -- [-2355.894] (-2383.353) (-2367.678) (-2370.003) * (-2376.840) (-2366.066) [-2357.726] (-2382.607) -- 0:10:48
Average standard deviation of split frequencies: 0.011286
481000 -- [-2363.593] (-2375.759) (-2379.360) (-2365.934) * (-2373.425) (-2381.022) [-2356.884] (-2362.182) -- 0:10:47
482000 -- (-2362.162) (-2381.268) (-2372.074) [-2355.720] * [-2360.236] (-2370.838) (-2365.792) (-2386.447) -- 0:10:46
483000 -- (-2375.716) (-2369.346) (-2362.209) [-2365.579] * [-2356.307] (-2363.361) (-2374.531) (-2379.405) -- 0:10:45
484000 -- [-2345.592] (-2355.837) (-2367.033) (-2380.931) * [-2360.398] (-2363.416) (-2398.118) (-2364.933) -- 0:10:43
485000 -- (-2365.586) [-2369.503] (-2365.775) (-2364.974) * [-2369.224] (-2351.461) (-2367.923) (-2369.756) -- 0:10:42
Average standard deviation of split frequencies: 0.011058
486000 -- (-2358.661) (-2358.223) [-2359.470] (-2375.378) * (-2371.907) (-2361.603) [-2355.692] (-2376.994) -- 0:10:41
487000 -- (-2378.992) [-2350.263] (-2369.963) (-2356.138) * (-2401.121) (-2363.835) (-2359.774) [-2354.568] -- 0:10:40
488000 -- [-2360.831] (-2363.391) (-2369.518) (-2361.503) * (-2378.152) [-2354.238] (-2357.175) (-2378.906) -- 0:10:38
489000 -- (-2368.659) (-2361.169) (-2346.538) [-2356.711] * (-2360.384) [-2355.983] (-2363.084) (-2366.792) -- 0:10:37
490000 -- (-2376.382) (-2365.932) (-2374.971) [-2361.384] * [-2350.219] (-2362.145) (-2384.197) (-2366.036) -- 0:10:36
Average standard deviation of split frequencies: 0.011292
491000 -- [-2353.050] (-2367.852) (-2356.812) (-2377.785) * (-2377.402) [-2358.073] (-2385.709) (-2362.359) -- 0:10:35
492000 -- [-2350.482] (-2381.351) (-2363.468) (-2372.036) * (-2378.531) (-2373.803) (-2358.207) [-2352.991] -- 0:10:33
493000 -- (-2365.554) (-2366.723) [-2348.861] (-2368.632) * (-2370.540) (-2371.556) (-2355.110) [-2360.177] -- 0:10:32
494000 -- [-2351.440] (-2363.171) (-2373.439) (-2362.598) * [-2355.018] (-2364.267) (-2359.919) (-2380.245) -- 0:10:31
495000 -- [-2372.306] (-2358.670) (-2384.506) (-2364.696) * (-2358.796) (-2368.901) [-2358.149] (-2375.713) -- 0:10:30
Average standard deviation of split frequencies: 0.011232
496000 -- (-2360.176) [-2354.951] (-2389.817) (-2372.814) * (-2375.581) [-2356.373] (-2374.953) (-2373.670) -- 0:10:28
497000 -- (-2374.886) (-2362.001) (-2363.556) [-2370.873] * (-2355.353) (-2363.969) (-2355.413) [-2356.323] -- 0:10:27
498000 -- (-2386.944) (-2367.744) (-2364.683) [-2358.502] * (-2354.596) [-2347.675] (-2360.570) (-2360.111) -- 0:10:26
499000 -- (-2379.362) (-2360.124) (-2372.611) [-2356.191] * (-2360.407) [-2365.568] (-2382.215) (-2357.715) -- 0:10:25
500000 -- (-2380.234) (-2361.003) [-2370.166] (-2366.071) * [-2358.355] (-2363.661) (-2355.929) (-2368.222) -- 0:10:24
Average standard deviation of split frequencies: 0.011523
501000 -- (-2378.484) (-2370.671) [-2365.573] (-2375.794) * (-2367.554) (-2359.208) [-2365.345] (-2366.376) -- 0:10:22
502000 -- (-2385.691) [-2360.038] (-2375.092) (-2375.321) * (-2381.125) (-2348.914) [-2363.781] (-2362.264) -- 0:10:22
503000 -- (-2359.005) (-2363.895) (-2362.881) [-2359.593] * (-2416.058) [-2349.276] (-2364.512) (-2382.155) -- 0:10:20
504000 -- (-2368.876) (-2358.186) (-2369.075) [-2360.054] * (-2382.957) [-2340.044] (-2359.693) (-2350.359) -- 0:10:19
505000 -- (-2366.574) (-2355.947) [-2358.068] (-2375.573) * (-2368.219) (-2368.467) (-2366.975) [-2355.004] -- 0:10:17
Average standard deviation of split frequencies: 0.011750
506000 -- (-2362.059) [-2365.319] (-2365.734) (-2382.097) * (-2373.076) (-2371.920) [-2369.500] (-2362.099) -- 0:10:17
507000 -- (-2367.264) [-2366.863] (-2362.940) (-2397.642) * (-2386.448) (-2380.015) [-2371.006] (-2359.940) -- 0:10:15
508000 -- (-2363.111) (-2403.816) (-2364.460) [-2355.534] * (-2377.676) (-2378.559) (-2371.749) [-2364.695] -- 0:10:14
509000 -- (-2370.311) (-2361.597) [-2368.269] (-2377.115) * (-2393.723) (-2358.123) (-2369.595) [-2364.135] -- 0:10:12
510000 -- (-2372.706) (-2360.389) (-2372.194) [-2357.592] * (-2383.134) (-2377.548) [-2367.244] (-2365.798) -- 0:10:12
Average standard deviation of split frequencies: 0.011546
511000 -- [-2364.101] (-2367.971) (-2352.763) (-2359.077) * (-2386.111) (-2380.726) [-2351.715] (-2366.072) -- 0:10:10
512000 -- [-2353.154] (-2385.219) (-2362.956) (-2370.796) * (-2359.445) (-2368.427) [-2354.213] (-2368.740) -- 0:10:09
513000 -- (-2384.407) (-2367.384) [-2374.024] (-2367.497) * (-2354.742) (-2368.314) [-2355.614] (-2371.743) -- 0:10:07
514000 -- (-2388.299) (-2355.133) [-2352.463] (-2366.029) * (-2362.087) (-2365.720) [-2349.071] (-2384.163) -- 0:10:07
515000 -- (-2383.172) [-2357.275] (-2356.040) (-2380.623) * (-2361.399) [-2363.783] (-2355.193) (-2365.230) -- 0:10:05
Average standard deviation of split frequencies: 0.011876
516000 -- (-2376.139) [-2355.481] (-2357.646) (-2365.283) * (-2367.157) (-2380.103) [-2354.376] (-2358.808) -- 0:10:04
517000 -- (-2352.438) [-2359.097] (-2367.991) (-2372.682) * (-2372.315) (-2362.959) [-2364.745] (-2375.852) -- 0:10:02
518000 -- [-2363.389] (-2374.549) (-2375.207) (-2358.646) * (-2377.263) (-2366.020) (-2359.093) [-2355.719] -- 0:10:02
519000 -- (-2372.095) [-2352.204] (-2359.884) (-2373.155) * (-2369.070) (-2377.762) (-2363.692) [-2354.637] -- 0:10:00
520000 -- (-2366.853) (-2366.964) (-2364.509) [-2359.543] * (-2389.705) (-2374.028) [-2361.235] (-2358.286) -- 0:09:59
Average standard deviation of split frequencies: 0.011838
521000 -- (-2362.323) (-2381.937) (-2357.088) [-2368.219] * (-2374.100) [-2355.355] (-2352.028) (-2373.049) -- 0:09:57
522000 -- (-2374.951) (-2367.547) [-2351.395] (-2394.770) * (-2381.626) (-2363.210) [-2363.209] (-2380.025) -- 0:09:57
523000 -- (-2376.106) (-2363.843) [-2349.565] (-2367.311) * (-2368.636) [-2355.981] (-2348.926) (-2380.880) -- 0:09:55
524000 -- [-2351.427] (-2375.747) (-2373.790) (-2379.674) * (-2368.278) (-2363.972) [-2363.899] (-2368.439) -- 0:09:54
525000 -- [-2357.082] (-2365.369) (-2363.649) (-2370.922) * [-2361.469] (-2353.746) (-2380.500) (-2371.924) -- 0:09:52
Average standard deviation of split frequencies: 0.011888
526000 -- (-2366.099) (-2370.266) [-2351.301] (-2360.607) * (-2370.767) (-2373.521) [-2366.871] (-2357.462) -- 0:09:52
527000 -- (-2379.251) [-2357.795] (-2363.869) (-2366.713) * [-2369.428] (-2365.573) (-2357.664) (-2368.545) -- 0:09:50
528000 -- (-2386.435) (-2355.054) [-2377.869] (-2354.735) * (-2371.893) (-2355.824) (-2373.238) [-2366.713] -- 0:09:49
529000 -- (-2371.393) (-2359.043) (-2374.866) [-2361.100] * [-2368.126] (-2359.326) (-2371.015) (-2355.628) -- 0:09:47
530000 -- (-2382.590) (-2369.679) (-2363.391) [-2357.504] * (-2371.079) [-2362.566] (-2362.729) (-2391.486) -- 0:09:47
Average standard deviation of split frequencies: 0.011287
531000 -- (-2365.226) (-2354.901) [-2348.648] (-2363.495) * (-2367.599) [-2367.787] (-2374.681) (-2386.149) -- 0:09:45
532000 -- [-2365.069] (-2376.137) (-2359.706) (-2376.786) * [-2363.576] (-2357.701) (-2371.766) (-2375.922) -- 0:09:44
533000 -- (-2357.412) (-2389.464) [-2353.857] (-2363.327) * (-2379.121) (-2375.774) (-2367.857) [-2359.058] -- 0:09:42
534000 -- (-2354.428) (-2372.998) (-2372.995) [-2356.473] * (-2363.452) (-2362.624) (-2365.063) [-2360.113] -- 0:09:42
535000 -- (-2375.339) (-2369.748) (-2359.799) [-2362.028] * (-2375.161) (-2373.449) (-2363.629) [-2360.069] -- 0:09:40
Average standard deviation of split frequencies: 0.010981
536000 -- (-2367.262) (-2380.394) (-2361.992) [-2352.106] * (-2381.734) (-2389.553) (-2367.106) [-2350.179] -- 0:09:39
537000 -- (-2370.180) (-2365.411) (-2357.134) [-2355.893] * (-2389.917) (-2370.468) (-2371.961) [-2354.627] -- 0:09:38
538000 -- (-2362.624) (-2386.165) [-2352.560] (-2376.708) * (-2374.333) (-2353.183) (-2358.797) [-2358.549] -- 0:09:37
539000 -- (-2366.837) (-2372.447) [-2358.217] (-2380.653) * (-2377.713) [-2365.389] (-2359.453) (-2367.738) -- 0:09:35
540000 -- (-2376.523) [-2364.214] (-2372.945) (-2384.496) * (-2397.785) [-2363.382] (-2358.693) (-2370.030) -- 0:09:34
Average standard deviation of split frequencies: 0.011074
541000 -- [-2370.130] (-2363.217) (-2356.986) (-2367.421) * (-2378.240) (-2374.277) (-2359.434) [-2350.195] -- 0:09:33
542000 -- [-2365.460] (-2370.238) (-2348.230) (-2378.180) * (-2364.033) (-2379.299) (-2348.260) [-2367.067] -- 0:09:32
543000 -- (-2372.833) (-2366.775) [-2357.092] (-2369.188) * (-2367.772) (-2380.900) [-2362.540] (-2365.651) -- 0:09:30
544000 -- (-2375.831) (-2378.560) [-2359.514] (-2371.776) * (-2350.798) (-2378.621) [-2368.032] (-2379.611) -- 0:09:29
545000 -- (-2361.323) (-2357.443) [-2347.397] (-2364.275) * (-2370.885) (-2365.039) (-2359.493) [-2365.246] -- 0:09:28
Average standard deviation of split frequencies: 0.011287
546000 -- (-2382.510) (-2371.300) (-2353.555) [-2362.921] * (-2383.577) (-2362.878) [-2365.106] (-2380.958) -- 0:09:27
547000 -- (-2380.732) [-2360.611] (-2363.499) (-2357.056) * (-2372.635) [-2374.429] (-2359.414) (-2372.305) -- 0:09:25
548000 -- (-2369.157) (-2372.706) (-2379.610) [-2355.119] * (-2361.690) (-2375.275) [-2370.529] (-2377.757) -- 0:09:24
549000 -- (-2375.477) (-2368.387) (-2385.351) [-2354.016] * (-2373.703) [-2355.335] (-2366.877) (-2392.714) -- 0:09:23
550000 -- (-2381.993) [-2373.426] (-2367.060) (-2355.274) * (-2370.377) (-2362.163) [-2351.995] (-2367.133) -- 0:09:22
Average standard deviation of split frequencies: 0.010814
551000 -- (-2370.643) (-2364.876) (-2354.901) [-2352.714] * (-2387.184) (-2363.739) [-2361.977] (-2357.236) -- 0:09:20
552000 -- (-2384.040) [-2359.920] (-2371.113) (-2361.415) * (-2363.956) (-2367.489) [-2352.386] (-2361.457) -- 0:09:19
553000 -- (-2370.785) [-2362.616] (-2356.286) (-2369.500) * [-2353.249] (-2384.026) (-2362.953) (-2363.285) -- 0:09:18
554000 -- [-2371.218] (-2373.763) (-2365.746) (-2352.613) * (-2375.572) (-2356.902) (-2372.925) [-2356.729] -- 0:09:17
555000 -- (-2369.930) [-2347.137] (-2383.390) (-2362.191) * [-2366.356] (-2368.149) (-2386.016) (-2361.708) -- 0:09:15
Average standard deviation of split frequencies: 0.010685
556000 -- (-2367.900) (-2361.064) (-2359.059) [-2353.767] * [-2353.102] (-2381.546) (-2372.344) (-2363.202) -- 0:09:14
557000 -- (-2362.427) [-2359.027] (-2379.098) (-2374.980) * [-2356.870] (-2367.840) (-2375.146) (-2357.650) -- 0:09:13
558000 -- [-2365.253] (-2362.369) (-2375.341) (-2383.559) * (-2369.188) (-2367.169) [-2356.695] (-2356.217) -- 0:09:12
559000 -- (-2361.113) (-2369.914) [-2347.621] (-2387.719) * (-2366.035) (-2361.283) (-2355.426) [-2355.578] -- 0:09:10
560000 -- (-2362.371) (-2377.578) [-2352.875] (-2370.155) * [-2358.452] (-2356.701) (-2371.287) (-2370.942) -- 0:09:09
Average standard deviation of split frequencies: 0.010491
561000 -- (-2377.271) [-2362.766] (-2352.387) (-2365.487) * (-2370.852) [-2359.031] (-2371.467) (-2378.341) -- 0:09:08
562000 -- (-2378.877) (-2370.763) [-2366.881] (-2354.065) * [-2365.045] (-2367.526) (-2355.082) (-2378.100) -- 0:09:07
563000 -- (-2379.992) [-2367.207] (-2355.758) (-2362.646) * (-2369.305) (-2363.905) [-2350.985] (-2370.474) -- 0:09:05
564000 -- (-2351.592) (-2365.686) (-2369.828) [-2358.303] * (-2368.969) (-2369.976) (-2371.714) [-2359.958] -- 0:09:04
565000 -- (-2367.933) [-2363.678] (-2369.615) (-2373.851) * (-2363.736) (-2357.907) [-2349.034] (-2369.131) -- 0:09:03
Average standard deviation of split frequencies: 0.010325
566000 -- [-2354.572] (-2363.951) (-2373.829) (-2378.656) * (-2369.460) (-2367.573) [-2362.345] (-2350.110) -- 0:09:02
567000 -- [-2351.728] (-2350.672) (-2369.070) (-2383.546) * (-2369.738) (-2377.394) (-2363.497) [-2350.730] -- 0:09:00
568000 -- [-2357.107] (-2360.039) (-2359.713) (-2366.327) * (-2381.697) (-2376.820) (-2389.991) [-2358.748] -- 0:08:59
569000 -- (-2357.002) [-2357.604] (-2363.238) (-2385.859) * [-2359.410] (-2360.649) (-2367.245) (-2373.339) -- 0:08:58
570000 -- (-2369.081) (-2371.675) (-2374.007) [-2361.975] * (-2375.145) (-2362.497) (-2384.536) [-2368.604] -- 0:08:57
Average standard deviation of split frequencies: 0.010689
571000 -- (-2373.538) [-2370.468] (-2380.150) (-2368.754) * (-2361.930) [-2372.468] (-2366.665) (-2371.188) -- 0:08:55
572000 -- (-2365.535) (-2374.819) (-2376.064) [-2366.359] * (-2349.847) (-2369.261) [-2359.621] (-2363.266) -- 0:08:54
573000 -- (-2369.398) (-2356.324) (-2384.397) [-2366.651] * (-2364.591) (-2371.974) [-2358.095] (-2368.767) -- 0:08:53
574000 -- [-2356.816] (-2391.125) (-2371.856) (-2361.072) * (-2376.991) (-2369.770) [-2352.950] (-2373.235) -- 0:08:52
575000 -- (-2366.742) (-2359.632) [-2372.111] (-2370.352) * (-2394.857) [-2350.873] (-2358.628) (-2363.575) -- 0:08:50
Average standard deviation of split frequencies: 0.010863
576000 -- (-2356.159) [-2368.576] (-2363.343) (-2391.824) * (-2377.131) [-2357.825] (-2363.329) (-2370.439) -- 0:08:49
577000 -- [-2355.789] (-2352.697) (-2353.489) (-2369.063) * (-2376.329) (-2359.565) [-2360.729] (-2386.288) -- 0:08:48
578000 -- (-2365.922) [-2347.627] (-2357.773) (-2363.965) * (-2362.214) [-2350.592] (-2359.246) (-2375.169) -- 0:08:47
579000 -- [-2357.121] (-2356.154) (-2360.298) (-2359.563) * [-2355.988] (-2373.178) (-2352.630) (-2368.699) -- 0:08:45
580000 -- [-2356.758] (-2372.446) (-2365.996) (-2362.480) * (-2384.575) [-2355.433] (-2366.933) (-2354.536) -- 0:08:44
Average standard deviation of split frequencies: 0.010751
581000 -- (-2356.969) (-2359.131) [-2358.939] (-2366.899) * (-2367.668) (-2378.411) [-2361.573] (-2367.567) -- 0:08:42
582000 -- (-2349.412) [-2359.333] (-2359.033) (-2379.858) * (-2377.564) [-2348.147] (-2358.341) (-2364.993) -- 0:08:42
583000 -- [-2358.070] (-2376.014) (-2392.025) (-2367.251) * (-2362.163) (-2383.978) (-2359.039) [-2364.881] -- 0:08:40
584000 -- [-2359.514] (-2364.080) (-2371.757) (-2363.624) * (-2362.259) (-2372.570) [-2365.462] (-2366.070) -- 0:08:39
585000 -- [-2368.025] (-2378.077) (-2354.804) (-2363.218) * (-2360.805) (-2363.006) (-2370.807) [-2355.639] -- 0:08:37
Average standard deviation of split frequencies: 0.010794
586000 -- (-2375.140) (-2357.709) (-2389.526) [-2366.657] * (-2375.047) (-2366.375) [-2347.859] (-2370.196) -- 0:08:37
587000 -- (-2393.995) (-2378.312) (-2367.731) [-2358.897] * (-2367.755) (-2371.258) (-2370.265) [-2352.751] -- 0:08:35
588000 -- (-2383.402) [-2365.217] (-2359.604) (-2368.696) * (-2387.877) (-2362.684) (-2366.764) [-2362.581] -- 0:08:34
589000 -- (-2385.480) (-2362.188) (-2365.861) [-2355.720] * [-2372.228] (-2364.966) (-2355.703) (-2380.373) -- 0:08:32
590000 -- (-2370.622) [-2367.313] (-2373.412) (-2389.557) * (-2372.561) (-2373.963) (-2380.093) [-2364.651] -- 0:08:32
Average standard deviation of split frequencies: 0.011078
591000 -- (-2384.444) (-2369.791) (-2376.904) [-2359.196] * [-2354.596] (-2375.861) (-2364.069) (-2374.717) -- 0:08:30
592000 -- [-2366.821] (-2363.575) (-2363.502) (-2362.194) * [-2344.103] (-2373.062) (-2365.690) (-2362.122) -- 0:08:29
593000 -- (-2366.265) (-2385.318) [-2355.291] (-2353.938) * (-2359.849) [-2358.481] (-2364.069) (-2351.640) -- 0:08:27
594000 -- (-2358.857) [-2385.339] (-2370.839) (-2369.541) * (-2357.687) [-2373.036] (-2372.614) (-2360.526) -- 0:08:27
595000 -- (-2377.365) (-2363.136) (-2374.314) [-2359.948] * [-2351.152] (-2359.200) (-2382.993) (-2381.855) -- 0:08:25
Average standard deviation of split frequencies: 0.011191
596000 -- [-2348.869] (-2357.649) (-2381.866) (-2356.502) * (-2385.289) [-2350.772] (-2365.141) (-2380.505) -- 0:08:24
597000 -- (-2374.351) (-2366.110) [-2353.080] (-2364.626) * (-2382.876) (-2371.262) [-2379.307] (-2373.875) -- 0:08:22
598000 -- (-2359.077) (-2363.884) [-2357.027] (-2370.207) * (-2388.325) [-2361.234] (-2362.871) (-2363.282) -- 0:08:22
599000 -- (-2367.472) (-2363.182) [-2357.415] (-2388.117) * (-2377.835) [-2362.443] (-2383.770) (-2354.402) -- 0:08:20
600000 -- (-2345.532) (-2386.067) (-2371.837) [-2369.252] * (-2374.983) [-2366.458] (-2363.136) (-2365.674) -- 0:08:19
Average standard deviation of split frequencies: 0.011130
601000 -- (-2375.767) (-2366.632) [-2364.832] (-2369.291) * [-2365.542] (-2368.082) (-2364.088) (-2363.354) -- 0:08:17
602000 -- (-2361.919) [-2353.471] (-2368.730) (-2375.656) * (-2376.720) (-2364.489) (-2382.241) [-2360.334] -- 0:08:17
603000 -- [-2360.028] (-2359.741) (-2370.570) (-2367.500) * [-2358.773] (-2351.070) (-2367.251) (-2372.547) -- 0:08:15
604000 -- [-2362.386] (-2372.395) (-2364.822) (-2376.243) * (-2363.314) [-2345.504] (-2355.321) (-2368.762) -- 0:08:14
605000 -- [-2354.464] (-2364.512) (-2385.252) (-2376.706) * [-2361.084] (-2355.760) (-2372.439) (-2365.647) -- 0:08:12
Average standard deviation of split frequencies: 0.011448
606000 -- (-2357.418) (-2377.837) [-2360.312] (-2364.604) * [-2363.707] (-2369.404) (-2391.541) (-2370.631) -- 0:08:12
607000 -- [-2358.278] (-2362.130) (-2361.044) (-2380.351) * (-2374.295) [-2344.893] (-2376.531) (-2380.921) -- 0:08:10
608000 -- [-2355.075] (-2361.588) (-2371.107) (-2364.589) * (-2369.403) [-2361.053] (-2374.778) (-2363.411) -- 0:08:09
609000 -- (-2373.157) (-2369.925) [-2358.855] (-2365.170) * (-2379.106) [-2354.903] (-2369.477) (-2355.290) -- 0:08:07
610000 -- [-2362.554] (-2385.327) (-2380.834) (-2366.747) * (-2391.418) [-2351.103] (-2362.679) (-2372.673) -- 0:08:07
Average standard deviation of split frequencies: 0.011268
611000 -- (-2364.479) [-2359.772] (-2363.991) (-2372.085) * (-2377.605) (-2360.901) [-2358.434] (-2387.621) -- 0:08:05
612000 -- (-2383.211) (-2370.304) [-2345.867] (-2359.613) * (-2372.529) (-2368.713) (-2367.234) [-2365.845] -- 0:08:04
613000 -- (-2374.346) [-2349.985] (-2361.491) (-2358.089) * (-2390.220) (-2360.508) [-2366.989] (-2372.705) -- 0:08:02
614000 -- (-2390.811) [-2358.937] (-2375.954) (-2358.069) * (-2367.122) [-2343.118] (-2353.052) (-2366.534) -- 0:08:02
615000 -- (-2371.420) [-2356.287] (-2385.958) (-2357.974) * (-2377.736) [-2351.061] (-2358.801) (-2375.954) -- 0:08:00
Average standard deviation of split frequencies: 0.011279
616000 -- (-2378.338) [-2352.890] (-2372.917) (-2358.567) * [-2354.553] (-2366.686) (-2364.453) (-2373.673) -- 0:07:59
617000 -- [-2371.550] (-2364.511) (-2373.103) (-2397.691) * [-2351.499] (-2363.367) (-2384.993) (-2363.552) -- 0:07:58
618000 -- (-2368.403) [-2352.237] (-2375.606) (-2367.297) * [-2366.864] (-2365.530) (-2386.057) (-2362.997) -- 0:07:57
619000 -- (-2367.449) (-2350.477) [-2370.339] (-2372.057) * (-2365.100) (-2370.313) [-2359.471] (-2366.744) -- 0:07:55
620000 -- [-2347.799] (-2358.020) (-2384.060) (-2356.071) * (-2378.878) (-2367.206) (-2377.556) [-2357.211] -- 0:07:54
Average standard deviation of split frequencies: 0.010785
621000 -- (-2358.254) [-2358.573] (-2388.198) (-2369.557) * (-2375.665) (-2370.844) (-2347.790) [-2357.759] -- 0:07:53
622000 -- [-2353.149] (-2370.925) (-2374.651) (-2369.494) * [-2361.850] (-2375.192) (-2363.437) (-2374.608) -- 0:07:52
623000 -- [-2370.212] (-2361.391) (-2369.938) (-2379.177) * (-2381.635) (-2363.286) [-2374.143] (-2363.868) -- 0:07:50
624000 -- (-2363.743) (-2375.295) (-2369.888) [-2359.286] * (-2369.395) (-2387.726) (-2391.517) [-2355.119] -- 0:07:49
625000 -- (-2364.545) (-2357.840) [-2350.001] (-2388.774) * (-2376.201) (-2383.437) (-2374.459) [-2363.038] -- 0:07:48
Average standard deviation of split frequencies: 0.010705
626000 -- (-2373.018) (-2364.801) [-2352.810] (-2379.316) * (-2363.455) (-2384.549) (-2360.217) [-2353.781] -- 0:07:47
627000 -- (-2368.521) (-2360.814) [-2361.799] (-2379.678) * (-2364.140) (-2377.203) [-2356.232] (-2360.943) -- 0:07:45
628000 -- (-2367.757) (-2380.558) [-2349.024] (-2362.113) * (-2369.995) (-2386.556) (-2365.303) [-2347.335] -- 0:07:44
629000 -- (-2371.125) (-2356.591) [-2359.150] (-2366.441) * (-2365.545) (-2370.134) [-2348.300] (-2361.591) -- 0:07:43
630000 -- [-2357.132] (-2355.888) (-2365.741) (-2355.909) * (-2372.833) [-2358.040] (-2365.075) (-2363.803) -- 0:07:42
Average standard deviation of split frequencies: 0.010913
631000 -- (-2375.547) (-2355.270) [-2346.058] (-2380.479) * (-2371.091) [-2365.504] (-2385.806) (-2371.511) -- 0:07:40
632000 -- (-2382.195) (-2363.714) [-2361.350] (-2375.145) * (-2358.201) (-2367.979) (-2359.559) [-2355.612] -- 0:07:39
633000 -- (-2374.326) [-2359.268] (-2369.745) (-2382.737) * (-2363.281) (-2366.829) (-2365.169) [-2343.483] -- 0:07:38
634000 -- (-2383.217) (-2378.442) (-2365.362) [-2361.053] * (-2356.797) (-2384.878) (-2357.402) [-2355.363] -- 0:07:37
635000 -- [-2349.875] (-2385.295) (-2358.138) (-2364.237) * [-2365.179] (-2389.042) (-2349.776) (-2351.539) -- 0:07:35
Average standard deviation of split frequencies: 0.010548
636000 -- (-2357.073) [-2370.239] (-2387.313) (-2366.312) * (-2355.526) (-2362.100) [-2354.046] (-2360.715) -- 0:07:34
637000 -- (-2382.328) (-2372.986) (-2365.954) [-2361.842] * (-2365.574) (-2366.260) [-2357.906] (-2373.338) -- 0:07:33
638000 -- (-2362.118) (-2357.896) (-2360.667) [-2362.848] * (-2368.063) (-2368.245) [-2366.351] (-2363.908) -- 0:07:32
639000 -- (-2379.560) (-2366.826) [-2350.522] (-2377.492) * (-2367.368) (-2389.964) [-2374.144] (-2364.613) -- 0:07:30
640000 -- (-2376.478) (-2373.398) (-2355.963) [-2354.913] * (-2348.388) [-2361.893] (-2363.482) (-2367.854) -- 0:07:29
Average standard deviation of split frequencies: 0.010980
641000 -- (-2376.939) (-2342.775) (-2373.698) [-2353.471] * (-2361.167) (-2379.811) [-2368.061] (-2372.978) -- 0:07:28
642000 -- (-2385.014) (-2364.320) [-2356.417] (-2361.616) * [-2362.767] (-2366.820) (-2376.418) (-2369.043) -- 0:07:27
643000 -- (-2375.309) (-2375.844) [-2344.644] (-2370.475) * (-2363.777) (-2366.891) (-2377.244) [-2358.881] -- 0:07:25
644000 -- (-2378.209) (-2372.026) (-2348.579) [-2356.322] * (-2376.205) (-2364.556) (-2368.038) [-2363.745] -- 0:07:24
645000 -- (-2355.855) (-2381.360) (-2358.635) [-2345.364] * (-2369.370) (-2368.607) [-2368.153] (-2383.663) -- 0:07:23
Average standard deviation of split frequencies: 0.010342
646000 -- [-2354.597] (-2372.382) (-2373.375) (-2354.352) * [-2359.484] (-2375.866) (-2373.992) (-2347.855) -- 0:07:22
647000 -- (-2365.437) (-2366.378) [-2355.350] (-2364.276) * (-2352.154) (-2379.351) (-2362.091) [-2358.290] -- 0:07:20
648000 -- [-2357.305] (-2367.001) (-2362.659) (-2361.136) * [-2355.369] (-2368.917) (-2369.368) (-2364.941) -- 0:07:19
649000 -- (-2359.741) (-2358.476) [-2354.050] (-2377.350) * [-2362.594] (-2364.017) (-2362.118) (-2373.659) -- 0:07:18
650000 -- (-2363.879) [-2362.935] (-2373.190) (-2371.849) * (-2350.341) (-2364.989) (-2370.617) [-2376.113] -- 0:07:17
Average standard deviation of split frequencies: 0.010211
651000 -- (-2390.156) (-2382.369) [-2361.095] (-2368.772) * (-2362.157) (-2371.558) [-2355.982] (-2373.523) -- 0:07:15
652000 -- [-2390.503] (-2363.217) (-2344.448) (-2368.081) * (-2358.207) (-2377.164) (-2384.215) [-2361.740] -- 0:07:14
653000 -- [-2357.357] (-2365.142) (-2356.203) (-2376.684) * [-2343.325] (-2374.904) (-2365.631) (-2373.305) -- 0:07:13
654000 -- (-2377.265) (-2367.727) (-2367.886) [-2362.010] * (-2357.655) (-2362.880) (-2360.692) [-2360.961] -- 0:07:12
655000 -- [-2357.401] (-2381.254) (-2357.963) (-2377.183) * (-2368.601) [-2355.636] (-2351.971) (-2371.360) -- 0:07:10
Average standard deviation of split frequencies: 0.010049
656000 -- (-2371.050) (-2382.654) (-2362.495) [-2357.080] * (-2388.467) (-2361.713) [-2352.297] (-2367.628) -- 0:07:09
657000 -- [-2347.531] (-2371.750) (-2365.174) (-2357.854) * (-2365.118) [-2357.687] (-2375.302) (-2358.286) -- 0:07:08
658000 -- (-2369.380) (-2385.688) (-2353.096) [-2347.498] * (-2365.448) [-2365.274] (-2372.911) (-2375.677) -- 0:07:07
659000 -- [-2344.815] (-2382.029) (-2349.505) (-2362.067) * (-2370.434) [-2355.294] (-2365.090) (-2369.494) -- 0:07:05
660000 -- [-2358.515] (-2369.610) (-2383.705) (-2357.667) * (-2356.901) [-2352.755] (-2354.602) (-2372.448) -- 0:07:04
Average standard deviation of split frequencies: 0.010123
661000 -- (-2354.632) (-2366.625) (-2369.650) [-2350.925] * (-2359.359) (-2356.078) (-2364.698) [-2353.056] -- 0:07:03
662000 -- (-2370.921) (-2367.130) [-2360.934] (-2365.531) * (-2364.905) (-2365.385) (-2375.805) [-2381.628] -- 0:07:02
663000 -- (-2381.202) [-2351.342] (-2372.570) (-2365.562) * (-2358.791) (-2355.182) [-2360.898] (-2367.600) -- 0:07:00
664000 -- (-2376.960) [-2360.095] (-2366.601) (-2358.081) * (-2378.444) (-2360.266) [-2357.371] (-2368.667) -- 0:06:59
665000 -- (-2376.900) (-2369.855) [-2368.703] (-2362.218) * (-2360.613) (-2353.471) (-2372.037) [-2361.923] -- 0:06:58
Average standard deviation of split frequencies: 0.009954
666000 -- (-2356.666) (-2368.620) (-2380.988) [-2363.410] * [-2371.531] (-2364.834) (-2365.665) (-2355.295) -- 0:06:57
667000 -- [-2361.994] (-2366.536) (-2354.131) (-2364.921) * [-2372.369] (-2375.680) (-2381.212) (-2361.314) -- 0:06:55
668000 -- [-2351.175] (-2380.567) (-2358.801) (-2387.757) * (-2367.701) (-2368.698) (-2370.597) [-2357.307] -- 0:06:54
669000 -- (-2380.819) (-2391.656) (-2360.484) [-2354.679] * (-2378.183) [-2355.925] (-2366.512) (-2377.244) -- 0:06:53
670000 -- (-2369.278) (-2378.494) [-2353.550] (-2365.252) * (-2368.789) (-2354.062) (-2369.129) [-2363.450] -- 0:06:52
Average standard deviation of split frequencies: 0.009917
671000 -- [-2361.556] (-2383.710) (-2368.447) (-2363.525) * (-2383.786) (-2355.429) [-2364.913] (-2357.619) -- 0:06:50
672000 -- (-2365.576) (-2362.188) [-2357.875] (-2375.227) * (-2399.380) (-2363.258) [-2357.412] (-2374.650) -- 0:06:49
673000 -- (-2364.400) (-2379.122) (-2369.537) [-2356.012] * (-2363.697) (-2369.691) (-2359.271) [-2347.694] -- 0:06:48
674000 -- (-2351.383) (-2366.165) (-2371.766) [-2363.289] * (-2349.959) (-2380.433) (-2380.365) [-2369.139] -- 0:06:47
675000 -- (-2366.995) (-2364.672) (-2370.247) [-2367.013] * [-2345.402] (-2364.146) (-2353.167) (-2358.006) -- 0:06:45
Average standard deviation of split frequencies: 0.009904
676000 -- [-2349.184] (-2367.149) (-2366.441) (-2367.113) * [-2349.307] (-2360.081) (-2375.894) (-2367.120) -- 0:06:44
677000 -- (-2368.357) (-2374.865) [-2356.505] (-2373.315) * (-2373.046) (-2395.332) (-2374.065) [-2356.915] -- 0:06:43
678000 -- (-2363.787) [-2354.044] (-2354.086) (-2360.443) * [-2357.814] (-2355.601) (-2362.617) (-2352.312) -- 0:06:42
679000 -- [-2367.072] (-2372.649) (-2349.355) (-2369.011) * [-2356.468] (-2381.517) (-2375.450) (-2359.494) -- 0:06:40
680000 -- [-2353.482] (-2364.024) (-2356.074) (-2370.390) * [-2350.172] (-2394.897) (-2379.738) (-2356.860) -- 0:06:39
Average standard deviation of split frequencies: 0.009663
681000 -- (-2357.204) (-2368.850) [-2351.785] (-2377.941) * [-2349.503] (-2392.955) (-2359.843) (-2381.593) -- 0:06:38
682000 -- (-2366.807) (-2363.681) [-2355.025] (-2378.763) * [-2356.476] (-2368.298) (-2354.718) (-2376.023) -- 0:06:37
683000 -- [-2364.397] (-2364.677) (-2373.993) (-2373.481) * (-2363.888) (-2367.902) (-2379.299) [-2349.678] -- 0:06:35
684000 -- (-2366.962) [-2370.701] (-2361.149) (-2378.633) * [-2363.267] (-2373.238) (-2367.713) (-2360.770) -- 0:06:34
685000 -- (-2348.748) (-2375.214) [-2368.876] (-2373.957) * [-2355.384] (-2358.260) (-2363.414) (-2367.383) -- 0:06:33
Average standard deviation of split frequencies: 0.009470
686000 -- (-2381.278) (-2375.938) [-2360.521] (-2377.676) * (-2357.757) [-2354.564] (-2371.824) (-2363.451) -- 0:06:32
687000 -- [-2359.903] (-2380.154) (-2363.069) (-2367.945) * (-2365.050) (-2358.878) [-2362.276] (-2378.830) -- 0:06:30
688000 -- (-2362.350) (-2371.484) [-2354.935] (-2378.708) * (-2372.790) (-2365.599) [-2369.056] (-2388.835) -- 0:06:29
689000 -- (-2362.344) (-2356.129) (-2377.666) [-2371.328] * [-2357.918] (-2356.083) (-2370.955) (-2379.805) -- 0:06:28
690000 -- (-2367.739) (-2374.021) (-2376.722) [-2361.876] * (-2365.709) (-2364.730) (-2365.614) [-2365.460] -- 0:06:27
Average standard deviation of split frequencies: 0.009289
691000 -- (-2366.667) (-2379.045) (-2368.057) [-2363.861] * (-2386.474) [-2350.401] (-2353.653) (-2377.859) -- 0:06:25
692000 -- (-2383.242) (-2382.263) [-2358.320] (-2352.366) * (-2380.298) (-2366.361) [-2365.425] (-2373.480) -- 0:06:24
693000 -- (-2379.742) [-2353.433] (-2368.037) (-2362.741) * (-2386.970) [-2369.803] (-2349.927) (-2365.399) -- 0:06:23
694000 -- (-2374.793) (-2365.791) (-2372.796) [-2368.149] * [-2364.690] (-2379.825) (-2360.664) (-2375.699) -- 0:06:22
695000 -- (-2372.871) (-2364.533) [-2359.365] (-2361.068) * [-2362.321] (-2373.768) (-2360.119) (-2375.513) -- 0:06:20
Average standard deviation of split frequencies: 0.009112
696000 -- (-2370.346) (-2352.702) (-2358.305) [-2361.366] * (-2372.885) (-2359.789) [-2359.025] (-2382.722) -- 0:06:19
697000 -- [-2365.598] (-2351.440) (-2359.832) (-2363.826) * (-2380.139) (-2374.885) (-2369.308) [-2361.955] -- 0:06:18
698000 -- (-2359.796) [-2361.057] (-2389.963) (-2368.572) * (-2368.222) (-2378.629) [-2359.048] (-2369.150) -- 0:06:17
699000 -- (-2362.881) [-2368.185] (-2374.027) (-2370.895) * (-2367.164) (-2381.738) (-2360.704) [-2364.959] -- 0:06:15
700000 -- [-2356.957] (-2361.869) (-2376.439) (-2371.254) * (-2377.078) [-2357.985] (-2373.748) (-2363.781) -- 0:06:14
Average standard deviation of split frequencies: 0.009367
701000 -- [-2351.953] (-2368.335) (-2372.464) (-2366.456) * (-2372.116) (-2364.554) (-2370.980) [-2371.891] -- 0:06:13
702000 -- (-2377.909) [-2354.677] (-2375.238) (-2351.694) * (-2370.023) (-2367.832) [-2356.337] (-2356.869) -- 0:06:12
703000 -- (-2366.255) (-2363.954) (-2385.508) [-2361.013] * (-2354.422) (-2377.944) [-2353.802] (-2375.851) -- 0:06:10
704000 -- (-2366.093) [-2363.898] (-2381.665) (-2366.537) * (-2363.684) (-2379.091) (-2355.270) [-2368.267] -- 0:06:09
705000 -- (-2363.337) (-2372.778) (-2361.954) [-2367.731] * (-2370.453) (-2381.382) [-2364.294] (-2355.314) -- 0:06:08
Average standard deviation of split frequencies: 0.009442
706000 -- (-2365.073) (-2370.664) [-2360.697] (-2384.626) * (-2362.591) (-2367.433) [-2362.304] (-2381.080) -- 0:06:07
707000 -- (-2364.836) [-2352.226] (-2360.208) (-2366.554) * (-2353.920) (-2360.520) [-2367.698] (-2359.812) -- 0:06:05
708000 -- [-2348.932] (-2370.942) (-2381.373) (-2365.461) * (-2370.381) [-2366.319] (-2375.383) (-2376.164) -- 0:06:04
709000 -- (-2363.657) (-2388.900) [-2367.428] (-2368.518) * [-2356.244] (-2361.614) (-2361.241) (-2367.512) -- 0:06:03
710000 -- (-2355.230) (-2380.734) [-2367.743] (-2365.223) * [-2355.988] (-2352.489) (-2357.045) (-2381.093) -- 0:06:02
Average standard deviation of split frequencies: 0.009162
711000 -- [-2348.680] (-2368.101) (-2381.785) (-2367.654) * (-2374.154) (-2375.016) [-2350.812] (-2375.775) -- 0:06:00
712000 -- (-2369.762) (-2363.603) [-2357.877] (-2361.639) * (-2357.728) (-2368.077) [-2354.154] (-2374.408) -- 0:05:59
713000 -- (-2372.890) (-2384.619) [-2364.973] (-2358.636) * (-2376.585) (-2360.904) (-2358.664) [-2362.499] -- 0:05:58
714000 -- (-2375.146) (-2368.483) [-2360.407] (-2352.122) * (-2378.430) [-2376.916] (-2360.339) (-2375.653) -- 0:05:57
715000 -- (-2391.175) [-2359.708] (-2366.881) (-2349.382) * [-2363.222] (-2371.319) (-2366.393) (-2358.351) -- 0:05:55
Average standard deviation of split frequencies: 0.009084
716000 -- (-2377.532) (-2367.290) [-2357.738] (-2371.345) * [-2354.816] (-2358.348) (-2360.907) (-2349.559) -- 0:05:54
717000 -- (-2370.043) (-2368.825) [-2351.079] (-2357.503) * (-2368.290) (-2358.942) [-2359.449] (-2351.679) -- 0:05:53
718000 -- (-2387.248) [-2352.051] (-2363.329) (-2367.080) * [-2350.023] (-2362.913) (-2375.300) (-2366.925) -- 0:05:52
719000 -- (-2383.398) (-2357.276) (-2352.845) [-2356.464] * (-2364.154) (-2376.299) [-2360.377] (-2365.865) -- 0:05:50
720000 -- (-2381.661) (-2351.078) (-2365.395) [-2355.946] * (-2363.983) (-2362.178) (-2374.425) [-2351.807] -- 0:05:49
Average standard deviation of split frequencies: 0.008851
721000 -- (-2391.422) [-2349.278] (-2377.445) (-2353.999) * (-2384.811) (-2370.507) (-2362.242) [-2360.536] -- 0:05:48
722000 -- (-2376.663) [-2359.297] (-2368.878) (-2359.944) * (-2355.403) [-2357.980] (-2372.876) (-2366.130) -- 0:05:47
723000 -- (-2382.256) (-2363.667) (-2363.016) [-2358.597] * (-2366.216) (-2365.015) [-2351.040] (-2369.250) -- 0:05:45
724000 -- (-2358.210) (-2372.611) (-2372.588) [-2365.028] * [-2360.210] (-2376.352) (-2364.881) (-2368.870) -- 0:05:44
725000 -- (-2353.121) (-2363.140) [-2360.530] (-2385.213) * (-2364.592) (-2363.378) [-2354.137] (-2362.832) -- 0:05:43
Average standard deviation of split frequencies: 0.008695
726000 -- [-2355.966] (-2371.787) (-2376.400) (-2357.543) * (-2365.764) [-2355.886] (-2374.038) (-2367.149) -- 0:05:42
727000 -- [-2367.176] (-2367.126) (-2377.757) (-2362.330) * (-2352.815) (-2371.170) (-2367.659) [-2372.124] -- 0:05:40
728000 -- (-2364.283) (-2356.387) (-2359.348) [-2375.991] * (-2373.282) [-2356.394] (-2377.760) (-2381.878) -- 0:05:39
729000 -- (-2380.747) (-2372.399) [-2356.617] (-2368.953) * (-2373.365) [-2355.883] (-2367.339) (-2356.995) -- 0:05:38
730000 -- (-2361.446) [-2368.158] (-2366.797) (-2360.207) * (-2370.783) (-2368.278) (-2359.740) [-2353.698] -- 0:05:37
Average standard deviation of split frequencies: 0.008629
731000 -- (-2360.099) [-2353.420] (-2385.111) (-2370.404) * [-2361.814] (-2371.630) (-2364.683) (-2368.998) -- 0:05:35
732000 -- (-2373.262) (-2361.074) (-2381.302) [-2358.254] * (-2376.905) (-2356.757) (-2358.035) [-2360.369] -- 0:05:34
733000 -- (-2379.448) [-2348.156] (-2383.668) (-2356.111) * (-2389.825) (-2365.066) [-2355.819] (-2360.100) -- 0:05:33
734000 -- [-2351.647] (-2370.139) (-2375.564) (-2355.824) * (-2360.325) (-2371.576) (-2358.291) [-2367.220] -- 0:05:32
735000 -- (-2360.533) (-2362.063) (-2371.210) [-2352.541] * (-2362.003) (-2382.221) [-2364.198] (-2396.655) -- 0:05:30
Average standard deviation of split frequencies: 0.008617
736000 -- (-2364.018) (-2355.972) (-2393.461) [-2352.273] * (-2366.769) [-2361.685] (-2360.613) (-2370.702) -- 0:05:29
737000 -- (-2368.392) [-2349.249] (-2362.944) (-2364.641) * [-2349.577] (-2363.735) (-2364.697) (-2378.031) -- 0:05:28
738000 -- [-2370.154] (-2368.836) (-2375.569) (-2355.491) * (-2358.616) (-2370.644) [-2352.038] (-2385.361) -- 0:05:27
739000 -- (-2370.635) (-2368.370) (-2365.599) [-2353.530] * (-2360.948) (-2355.471) (-2368.370) [-2361.002] -- 0:05:25
740000 -- (-2361.142) (-2357.576) (-2381.378) [-2345.002] * (-2362.537) (-2377.822) (-2348.478) [-2357.529] -- 0:05:24
Average standard deviation of split frequencies: 0.008493
741000 -- (-2354.919) (-2366.444) [-2359.737] (-2351.454) * (-2363.766) (-2387.353) (-2362.560) [-2355.674] -- 0:05:23
742000 -- (-2356.429) (-2367.676) (-2367.891) [-2352.054] * [-2358.882] (-2399.322) (-2369.922) (-2361.085) -- 0:05:22
743000 -- (-2366.496) (-2365.349) (-2371.369) [-2351.838] * (-2382.488) [-2379.150] (-2358.433) (-2361.506) -- 0:05:20
744000 -- (-2404.387) (-2362.534) [-2360.726] (-2364.030) * (-2374.379) [-2374.906] (-2379.501) (-2357.735) -- 0:05:19
745000 -- [-2358.476] (-2375.362) (-2377.460) (-2366.971) * (-2369.302) [-2359.323] (-2379.579) (-2370.817) -- 0:05:18
Average standard deviation of split frequencies: 0.008758
746000 -- (-2373.419) [-2357.931] (-2363.533) (-2373.768) * (-2381.938) (-2371.716) (-2373.050) [-2351.692] -- 0:05:17
747000 -- (-2370.996) (-2369.365) (-2381.006) [-2360.173] * (-2369.398) (-2360.457) (-2363.882) [-2356.166] -- 0:05:15
748000 -- (-2362.443) (-2378.162) [-2369.498] (-2365.845) * (-2357.339) (-2380.649) (-2346.266) [-2360.965] -- 0:05:14
749000 -- (-2365.554) [-2363.434] (-2363.388) (-2375.446) * (-2356.121) (-2363.515) [-2352.653] (-2365.995) -- 0:05:13
750000 -- (-2360.455) [-2357.174] (-2362.528) (-2369.393) * (-2365.762) (-2380.965) (-2352.618) [-2359.276] -- 0:05:12
Average standard deviation of split frequencies: 0.008811
751000 -- (-2379.415) (-2355.375) [-2369.889] (-2372.010) * [-2373.976] (-2361.359) (-2368.455) (-2393.972) -- 0:05:11
752000 -- (-2363.372) [-2353.499] (-2354.600) (-2367.248) * (-2373.234) [-2362.659] (-2359.379) (-2381.085) -- 0:05:09
753000 -- (-2359.271) (-2368.863) (-2363.039) [-2360.327] * (-2382.064) (-2353.320) [-2361.946] (-2368.031) -- 0:05:08
754000 -- (-2349.188) (-2364.799) [-2352.067] (-2377.247) * [-2373.622] (-2357.668) (-2372.213) (-2361.890) -- 0:05:07
755000 -- (-2370.703) (-2386.063) (-2371.308) [-2357.340] * (-2375.228) (-2358.734) [-2360.843] (-2363.847) -- 0:05:06
Average standard deviation of split frequencies: 0.008934
756000 -- (-2356.251) (-2358.490) (-2374.742) [-2360.653] * (-2361.310) (-2348.454) (-2370.625) [-2359.759] -- 0:05:04
757000 -- (-2353.042) (-2361.290) [-2363.923] (-2360.467) * (-2363.096) [-2360.599] (-2381.675) (-2358.155) -- 0:05:03
758000 -- (-2359.723) (-2364.749) [-2376.326] (-2369.194) * [-2354.203] (-2354.250) (-2369.258) (-2367.804) -- 0:05:02
759000 -- [-2345.472] (-2371.099) (-2374.846) (-2361.394) * (-2358.078) [-2358.334] (-2368.782) (-2353.794) -- 0:05:01
760000 -- [-2348.191] (-2366.070) (-2372.945) (-2375.067) * (-2381.319) [-2364.966] (-2382.915) (-2368.079) -- 0:04:59
Average standard deviation of split frequencies: 0.008986
761000 -- (-2366.352) [-2363.821] (-2358.843) (-2362.369) * (-2359.131) (-2371.521) [-2354.067] (-2385.800) -- 0:04:58
762000 -- [-2362.015] (-2368.072) (-2358.722) (-2369.162) * (-2361.955) (-2362.241) (-2360.646) [-2351.899] -- 0:04:57
763000 -- (-2361.770) (-2373.807) [-2372.823] (-2377.369) * [-2364.128] (-2364.745) (-2374.002) (-2373.668) -- 0:04:56
764000 -- (-2357.151) (-2365.130) (-2371.140) [-2357.794] * [-2366.904] (-2362.097) (-2372.844) (-2378.714) -- 0:04:55
765000 -- (-2367.474) (-2377.984) [-2356.694] (-2383.028) * (-2359.464) [-2364.380] (-2375.054) (-2360.397) -- 0:04:53
Average standard deviation of split frequencies: 0.008673
766000 -- [-2361.178] (-2369.877) (-2357.324) (-2354.316) * (-2370.470) [-2368.439] (-2380.197) (-2370.987) -- 0:04:52
767000 -- (-2398.420) (-2375.547) [-2356.023] (-2370.211) * (-2353.501) (-2363.000) (-2368.806) [-2360.401] -- 0:04:51
768000 -- (-2379.923) (-2367.902) (-2356.546) [-2349.347] * [-2353.029] (-2374.100) (-2378.335) (-2364.716) -- 0:04:50
769000 -- (-2374.378) [-2370.968] (-2367.235) (-2368.472) * (-2351.501) (-2371.515) (-2357.554) [-2374.573] -- 0:04:48
770000 -- [-2361.439] (-2359.156) (-2370.083) (-2359.517) * (-2353.953) [-2365.895] (-2361.647) (-2365.292) -- 0:04:47
Average standard deviation of split frequencies: 0.008296
771000 -- (-2363.728) [-2365.555] (-2362.816) (-2371.032) * (-2356.422) (-2382.210) (-2364.600) [-2360.340] -- 0:04:46
772000 -- (-2357.253) (-2365.809) [-2356.391] (-2381.484) * [-2357.592] (-2368.405) (-2369.312) (-2367.830) -- 0:04:45
773000 -- (-2371.233) (-2370.278) [-2352.907] (-2355.757) * (-2364.778) (-2373.595) [-2367.131] (-2357.975) -- 0:04:43
774000 -- (-2372.072) (-2375.904) [-2344.532] (-2355.756) * (-2373.123) (-2378.857) (-2367.184) [-2350.407] -- 0:04:42
775000 -- (-2385.326) (-2374.291) [-2349.164] (-2361.280) * (-2379.729) (-2372.267) [-2358.141] (-2369.612) -- 0:04:41
Average standard deviation of split frequencies: 0.008125
776000 -- (-2357.683) [-2355.495] (-2375.579) (-2363.747) * (-2361.052) (-2385.127) (-2360.521) [-2355.095] -- 0:04:40
777000 -- (-2363.980) (-2356.668) [-2380.107] (-2376.562) * (-2372.958) (-2366.750) (-2356.065) [-2355.281] -- 0:04:38
778000 -- (-2360.368) [-2354.898] (-2373.931) (-2360.765) * (-2362.867) [-2356.033] (-2363.848) (-2361.820) -- 0:04:37
779000 -- (-2374.640) [-2356.293] (-2361.983) (-2357.931) * (-2387.839) (-2381.979) [-2358.755] (-2354.153) -- 0:04:36
780000 -- (-2387.741) [-2364.195] (-2361.927) (-2382.304) * (-2366.817) [-2365.551] (-2383.526) (-2380.977) -- 0:04:35
Average standard deviation of split frequencies: 0.008482
781000 -- [-2369.038] (-2363.238) (-2368.623) (-2365.037) * [-2362.995] (-2355.642) (-2370.917) (-2358.520) -- 0:04:33
782000 -- [-2364.623] (-2373.305) (-2384.313) (-2384.245) * (-2370.804) [-2353.187] (-2370.964) (-2370.715) -- 0:04:32
783000 -- (-2364.822) (-2367.153) [-2362.623] (-2370.870) * (-2370.326) [-2367.754] (-2364.021) (-2368.184) -- 0:04:31
784000 -- (-2371.639) (-2376.040) [-2359.233] (-2376.176) * (-2382.388) (-2375.370) (-2359.478) [-2354.583] -- 0:04:30
785000 -- (-2370.784) (-2384.800) (-2348.656) [-2356.287] * (-2365.515) (-2365.395) (-2364.614) [-2350.727] -- 0:04:28
Average standard deviation of split frequencies: 0.008256
786000 -- (-2366.446) [-2359.108] (-2360.613) (-2369.889) * (-2375.835) (-2371.353) (-2371.327) [-2356.458] -- 0:04:27
787000 -- (-2364.911) [-2361.569] (-2377.440) (-2352.896) * (-2380.452) (-2379.831) [-2365.682] (-2349.591) -- 0:04:26
788000 -- [-2348.999] (-2367.295) (-2370.962) (-2374.086) * (-2375.478) (-2379.672) (-2374.204) [-2359.789] -- 0:04:25
789000 -- (-2366.769) (-2368.874) [-2356.539] (-2375.302) * [-2361.438] (-2366.840) (-2373.559) (-2371.887) -- 0:04:23
790000 -- (-2363.682) (-2362.613) (-2357.306) [-2351.227] * (-2353.032) (-2379.032) (-2361.611) [-2352.641] -- 0:04:22
Average standard deviation of split frequencies: 0.008217
791000 -- [-2349.696] (-2368.470) (-2362.605) (-2354.177) * (-2355.214) [-2351.631] (-2361.440) (-2348.308) -- 0:04:21
792000 -- (-2366.217) [-2354.187] (-2384.190) (-2363.159) * (-2359.793) [-2365.306] (-2348.770) (-2364.666) -- 0:04:19
793000 -- (-2373.253) (-2368.083) (-2360.583) [-2361.363] * (-2359.476) (-2367.179) [-2367.607] (-2366.866) -- 0:04:18
794000 -- (-2362.380) [-2367.944] (-2363.887) (-2377.144) * (-2369.953) [-2365.554] (-2364.314) (-2382.033) -- 0:04:17
795000 -- (-2361.783) (-2373.418) [-2356.333] (-2369.329) * [-2346.283] (-2370.043) (-2376.559) (-2351.132) -- 0:04:16
Average standard deviation of split frequencies: 0.008060
796000 -- (-2359.398) (-2375.948) (-2357.400) [-2358.236] * (-2360.150) (-2374.220) (-2374.660) [-2364.944] -- 0:04:14
797000 -- [-2359.011] (-2361.950) (-2384.329) (-2354.716) * (-2373.044) [-2359.584] (-2360.269) (-2368.828) -- 0:04:13
798000 -- [-2359.862] (-2385.875) (-2382.548) (-2368.325) * (-2364.548) (-2369.711) [-2367.413] (-2370.393) -- 0:04:12
799000 -- [-2351.659] (-2364.688) (-2372.405) (-2358.004) * [-2356.654] (-2370.434) (-2366.277) (-2381.379) -- 0:04:11
800000 -- (-2358.587) (-2350.369) [-2374.763] (-2360.853) * (-2369.520) (-2375.105) [-2368.553] (-2362.877) -- 0:04:09
Average standard deviation of split frequencies: 0.007958
801000 -- (-2359.488) (-2370.603) (-2374.294) [-2352.920] * (-2361.267) (-2378.712) (-2358.331) [-2362.722] -- 0:04:08
802000 -- [-2364.069] (-2361.260) (-2371.890) (-2359.415) * [-2364.368] (-2364.067) (-2349.063) (-2360.870) -- 0:04:07
803000 -- (-2362.525) (-2366.117) [-2357.457] (-2365.015) * (-2374.046) [-2358.484] (-2348.020) (-2358.791) -- 0:04:06
804000 -- (-2360.813) (-2365.860) [-2363.531] (-2372.715) * (-2376.803) (-2368.509) (-2365.791) [-2351.776] -- 0:04:04
805000 -- [-2381.533] (-2373.109) (-2364.629) (-2374.298) * (-2373.766) (-2369.918) (-2369.393) [-2346.435] -- 0:04:03
Average standard deviation of split frequencies: 0.007978
806000 -- (-2376.568) (-2382.186) [-2354.431] (-2373.852) * (-2373.211) (-2364.498) (-2373.834) [-2352.816] -- 0:04:02
807000 -- (-2364.112) [-2360.806] (-2369.545) (-2371.942) * (-2363.539) (-2364.601) [-2368.992] (-2379.164) -- 0:04:01
808000 -- [-2360.030] (-2365.557) (-2370.738) (-2366.316) * (-2362.669) [-2367.417] (-2354.879) (-2381.962) -- 0:03:59
809000 -- (-2366.384) (-2360.607) (-2370.891) [-2353.834] * [-2363.635] (-2363.431) (-2369.135) (-2385.969) -- 0:03:58
810000 -- [-2353.788] (-2388.108) (-2366.783) (-2373.331) * [-2363.396] (-2374.786) (-2382.344) (-2371.108) -- 0:03:57
Average standard deviation of split frequencies: 0.008005
811000 -- (-2368.516) (-2361.051) [-2361.066] (-2371.517) * (-2365.755) (-2381.119) [-2368.998] (-2372.054) -- 0:03:56
812000 -- (-2370.367) (-2376.189) (-2377.130) [-2371.164] * [-2356.893] (-2378.358) (-2367.582) (-2361.537) -- 0:03:54
813000 -- (-2364.640) (-2363.904) [-2355.324] (-2356.115) * [-2351.878] (-2357.385) (-2367.409) (-2358.248) -- 0:03:53
814000 -- [-2354.677] (-2377.383) (-2363.718) (-2362.842) * (-2376.668) [-2348.582] (-2362.125) (-2380.967) -- 0:03:52
815000 -- (-2362.059) (-2363.238) (-2352.041) [-2369.474] * (-2370.417) [-2358.994] (-2371.675) (-2381.549) -- 0:03:51
Average standard deviation of split frequencies: 0.007934
816000 -- [-2364.514] (-2357.691) (-2351.475) (-2374.150) * (-2382.170) (-2361.301) [-2361.139] (-2359.973) -- 0:03:49
817000 -- (-2361.293) (-2353.897) [-2366.787] (-2366.029) * (-2370.169) (-2362.385) (-2368.881) [-2349.246] -- 0:03:48
818000 -- (-2386.924) [-2348.457] (-2363.786) (-2363.086) * (-2384.167) (-2354.195) (-2361.931) [-2368.602] -- 0:03:47
819000 -- [-2351.631] (-2370.142) (-2369.524) (-2372.996) * (-2356.842) (-2361.971) [-2353.471] (-2386.856) -- 0:03:46
820000 -- [-2350.902] (-2366.549) (-2380.190) (-2367.286) * (-2393.282) (-2371.617) [-2353.529] (-2372.855) -- 0:03:44
Average standard deviation of split frequencies: 0.008320
821000 -- (-2361.382) (-2359.270) [-2360.777] (-2377.158) * (-2366.686) (-2368.212) (-2351.275) [-2361.338] -- 0:03:43
822000 -- (-2363.853) (-2355.683) [-2365.127] (-2381.627) * (-2359.336) (-2356.091) (-2367.439) [-2363.584] -- 0:03:42
823000 -- (-2367.431) (-2367.070) [-2359.748] (-2375.782) * (-2351.852) [-2352.360] (-2378.964) (-2384.897) -- 0:03:41
824000 -- [-2363.766] (-2369.985) (-2370.729) (-2365.799) * (-2355.856) (-2356.344) [-2373.096] (-2385.677) -- 0:03:39
825000 -- (-2360.512) (-2363.014) [-2357.986] (-2363.397) * (-2374.049) (-2360.284) [-2363.119] (-2375.263) -- 0:03:38
Average standard deviation of split frequencies: 0.008008
826000 -- (-2382.057) (-2362.391) (-2361.130) [-2361.997] * (-2355.315) [-2358.583] (-2374.061) (-2373.320) -- 0:03:37
827000 -- (-2367.682) [-2352.209] (-2376.967) (-2367.472) * (-2363.991) (-2374.906) (-2361.655) [-2355.100] -- 0:03:36
828000 -- [-2368.811] (-2366.465) (-2377.892) (-2370.257) * (-2371.656) (-2356.804) (-2354.824) [-2356.590] -- 0:03:34
829000 -- (-2375.791) (-2374.081) (-2390.668) [-2358.956] * (-2391.380) [-2348.940] (-2373.938) (-2378.297) -- 0:03:33
830000 -- (-2364.907) [-2358.066] (-2374.784) (-2365.829) * (-2365.577) (-2353.136) (-2363.885) [-2349.167] -- 0:03:32
Average standard deviation of split frequencies: 0.008176
831000 -- [-2357.382] (-2372.637) (-2370.832) (-2380.446) * (-2368.225) (-2369.730) (-2369.017) [-2355.965] -- 0:03:31
832000 -- (-2357.192) (-2361.512) (-2369.389) [-2362.132] * [-2363.734] (-2381.006) (-2359.100) (-2367.366) -- 0:03:29
833000 -- (-2380.777) (-2352.257) [-2358.388] (-2371.459) * (-2359.426) (-2368.988) [-2344.869] (-2361.490) -- 0:03:28
834000 -- [-2359.388] (-2350.477) (-2358.068) (-2347.954) * (-2377.148) (-2357.056) [-2357.980] (-2359.251) -- 0:03:27
835000 -- (-2357.692) (-2367.045) (-2378.952) [-2353.613] * (-2364.053) (-2353.496) (-2366.945) [-2353.010] -- 0:03:26
Average standard deviation of split frequencies: 0.008397
836000 -- (-2375.450) (-2376.026) (-2364.970) [-2352.555] * (-2374.041) (-2358.025) [-2357.383] (-2369.855) -- 0:03:24
837000 -- (-2382.543) [-2350.948] (-2366.310) (-2385.676) * (-2356.139) [-2361.708] (-2385.623) (-2373.015) -- 0:03:23
838000 -- (-2380.791) (-2363.065) [-2354.295] (-2375.838) * (-2363.065) [-2362.834] (-2375.459) (-2358.594) -- 0:03:22
839000 -- (-2387.924) (-2382.980) [-2353.406] (-2376.639) * (-2359.698) (-2371.723) (-2372.723) [-2363.512] -- 0:03:21
840000 -- (-2361.982) (-2393.664) [-2352.000] (-2392.242) * (-2360.068) (-2358.874) (-2367.686) [-2362.604] -- 0:03:19
Average standard deviation of split frequencies: 0.008785
841000 -- [-2347.044] (-2363.287) (-2365.173) (-2377.961) * [-2352.163] (-2365.057) (-2371.180) (-2359.182) -- 0:03:18
842000 -- [-2359.533] (-2365.296) (-2369.383) (-2380.292) * [-2359.940] (-2365.039) (-2376.784) (-2352.096) -- 0:03:17
843000 -- [-2368.957] (-2349.942) (-2360.312) (-2388.742) * (-2363.367) [-2354.089] (-2378.970) (-2362.628) -- 0:03:16
844000 -- (-2367.625) [-2365.051] (-2361.144) (-2377.467) * (-2368.733) (-2352.979) (-2380.206) [-2362.603] -- 0:03:14
845000 -- (-2357.921) (-2358.795) [-2354.536] (-2368.195) * (-2375.697) (-2368.909) [-2366.028] (-2370.330) -- 0:03:13
Average standard deviation of split frequencies: 0.008818
846000 -- (-2365.953) [-2354.160] (-2363.942) (-2381.902) * [-2353.746] (-2379.921) (-2371.147) (-2367.207) -- 0:03:12
847000 -- (-2369.420) [-2351.745] (-2369.981) (-2370.161) * (-2361.022) [-2349.810] (-2368.260) (-2369.832) -- 0:03:11
848000 -- (-2362.557) (-2368.844) (-2353.470) [-2358.653] * (-2362.693) [-2363.856] (-2381.461) (-2364.183) -- 0:03:09
849000 -- [-2343.969] (-2362.701) (-2378.395) (-2372.994) * (-2384.629) (-2374.519) (-2366.696) [-2360.524] -- 0:03:08
850000 -- (-2361.181) [-2361.581] (-2378.773) (-2369.598) * (-2377.357) (-2371.061) [-2356.453] (-2366.846) -- 0:03:07
Average standard deviation of split frequencies: 0.008581
851000 -- (-2367.483) [-2361.675] (-2360.665) (-2375.556) * (-2362.409) [-2370.912] (-2371.679) (-2358.546) -- 0:03:06
852000 -- (-2367.548) [-2356.367] (-2380.205) (-2368.412) * (-2374.469) (-2376.258) [-2367.492] (-2349.307) -- 0:03:04
853000 -- [-2349.382] (-2355.934) (-2380.544) (-2354.017) * [-2348.014] (-2357.941) (-2380.121) (-2376.911) -- 0:03:03
854000 -- (-2361.850) (-2375.362) [-2367.072] (-2359.612) * (-2361.616) [-2362.835] (-2358.363) (-2361.672) -- 0:03:02
855000 -- (-2364.085) (-2392.511) (-2383.750) [-2360.218] * (-2354.708) [-2367.073] (-2363.253) (-2388.227) -- 0:03:01
Average standard deviation of split frequencies: 0.008631
856000 -- (-2368.166) (-2374.546) (-2380.400) [-2376.076] * [-2355.423] (-2365.285) (-2371.488) (-2377.596) -- 0:02:59
857000 -- (-2349.928) (-2373.672) (-2371.968) [-2364.013] * [-2360.292] (-2363.592) (-2371.349) (-2357.759) -- 0:02:58
858000 -- (-2363.446) (-2364.808) (-2378.776) [-2358.352] * (-2388.097) [-2356.460] (-2357.659) (-2369.805) -- 0:02:57
859000 -- (-2366.591) (-2369.303) (-2367.332) [-2354.766] * (-2378.969) (-2377.700) [-2359.160] (-2358.383) -- 0:02:56
860000 -- [-2362.682] (-2367.234) (-2362.286) (-2366.602) * (-2367.380) [-2369.483] (-2362.765) (-2363.925) -- 0:02:54
Average standard deviation of split frequencies: 0.008490
861000 -- (-2369.805) [-2356.680] (-2354.204) (-2387.609) * (-2361.453) [-2349.737] (-2359.897) (-2387.940) -- 0:02:53
862000 -- [-2358.798] (-2353.754) (-2358.091) (-2378.310) * (-2370.903) [-2361.712] (-2376.179) (-2351.585) -- 0:02:52
863000 -- [-2365.061] (-2377.013) (-2366.097) (-2367.462) * (-2368.769) [-2355.167] (-2363.570) (-2367.775) -- 0:02:51
864000 -- (-2369.870) [-2350.401] (-2361.465) (-2349.949) * (-2382.049) (-2370.221) [-2362.707] (-2354.031) -- 0:02:49
865000 -- (-2362.496) [-2362.103] (-2347.729) (-2367.260) * [-2361.450] (-2352.774) (-2386.082) (-2377.422) -- 0:02:48
Average standard deviation of split frequencies: 0.008324
866000 -- [-2352.426] (-2368.235) (-2381.004) (-2393.302) * [-2359.735] (-2372.291) (-2370.774) (-2368.362) -- 0:02:47
867000 -- (-2365.885) (-2372.311) [-2360.505] (-2399.874) * [-2352.985] (-2366.914) (-2366.374) (-2365.912) -- 0:02:46
868000 -- (-2360.566) [-2373.773] (-2367.419) (-2376.989) * (-2376.976) [-2366.221] (-2370.724) (-2363.664) -- 0:02:44
869000 -- (-2371.572) (-2370.435) [-2360.245] (-2365.862) * [-2362.217] (-2364.222) (-2361.961) (-2363.661) -- 0:02:43
870000 -- [-2357.760] (-2356.645) (-2372.729) (-2373.073) * [-2359.557] (-2362.981) (-2367.088) (-2358.438) -- 0:02:42
Average standard deviation of split frequencies: 0.008146
871000 -- [-2376.663] (-2359.509) (-2388.651) (-2356.340) * (-2386.137) [-2347.651] (-2366.115) (-2359.540) -- 0:02:41
872000 -- (-2369.652) [-2355.974] (-2363.771) (-2359.771) * (-2377.947) (-2377.342) [-2362.052] (-2365.771) -- 0:02:39
873000 -- (-2374.999) (-2354.111) (-2355.570) [-2352.575] * (-2366.523) [-2359.567] (-2368.757) (-2361.185) -- 0:02:38
874000 -- (-2369.511) (-2367.063) (-2377.730) [-2365.088] * [-2372.096] (-2367.553) (-2381.047) (-2380.468) -- 0:02:37
875000 -- (-2365.586) (-2364.139) (-2381.682) [-2355.568] * [-2358.466] (-2352.805) (-2373.941) (-2354.274) -- 0:02:36
Average standard deviation of split frequencies: 0.008047
876000 -- (-2357.339) (-2357.253) [-2362.509] (-2365.120) * [-2358.227] (-2357.170) (-2357.281) (-2373.132) -- 0:02:34
877000 -- (-2357.212) (-2364.011) [-2355.077] (-2373.606) * (-2373.373) (-2364.979) (-2354.385) [-2353.302] -- 0:02:33
878000 -- [-2354.696] (-2364.023) (-2355.038) (-2363.793) * (-2359.705) (-2372.602) [-2355.289] (-2360.180) -- 0:02:32
879000 -- (-2368.382) (-2374.067) (-2358.741) [-2368.991] * (-2362.633) [-2364.280] (-2370.353) (-2373.375) -- 0:02:31
880000 -- (-2360.538) (-2393.043) (-2362.948) [-2363.711] * (-2355.738) (-2388.991) (-2375.383) [-2358.029] -- 0:02:29
Average standard deviation of split frequencies: 0.008120
881000 -- [-2346.052] (-2361.992) (-2375.395) (-2355.100) * [-2360.316] (-2370.002) (-2373.361) (-2356.284) -- 0:02:28
882000 -- (-2369.370) [-2358.574] (-2374.079) (-2372.117) * (-2359.103) [-2351.031] (-2363.974) (-2362.402) -- 0:02:27
883000 -- (-2353.552) (-2367.165) [-2361.543] (-2373.654) * [-2358.797] (-2363.073) (-2372.334) (-2359.724) -- 0:02:26
884000 -- (-2367.725) (-2373.371) (-2372.772) [-2358.130] * [-2352.989] (-2353.966) (-2375.304) (-2358.941) -- 0:02:24
885000 -- (-2374.990) (-2370.855) (-2375.844) [-2360.253] * [-2345.699] (-2373.954) (-2372.710) (-2372.579) -- 0:02:23
Average standard deviation of split frequencies: 0.007858
886000 -- (-2361.260) (-2369.159) [-2360.993] (-2382.029) * (-2359.969) (-2368.810) (-2367.720) [-2351.499] -- 0:02:22
887000 -- (-2361.669) [-2361.054] (-2354.956) (-2392.252) * (-2368.690) (-2364.863) (-2366.222) [-2366.739] -- 0:02:21
888000 -- (-2357.426) (-2369.359) [-2365.601] (-2366.084) * (-2369.607) (-2370.425) [-2362.403] (-2359.183) -- 0:02:19
889000 -- [-2351.160] (-2387.281) (-2369.395) (-2355.421) * (-2366.355) (-2369.648) [-2358.221] (-2368.226) -- 0:02:18
890000 -- (-2360.275) (-2370.950) [-2363.385] (-2369.503) * (-2367.319) (-2370.139) [-2358.375] (-2366.354) -- 0:02:17
Average standard deviation of split frequencies: 0.007699
891000 -- [-2351.843] (-2369.488) (-2359.627) (-2376.552) * (-2372.362) (-2373.240) (-2365.774) [-2350.774] -- 0:02:16
892000 -- (-2366.678) [-2356.411] (-2383.968) (-2360.103) * (-2373.886) (-2379.188) (-2367.505) [-2347.762] -- 0:02:14
893000 -- (-2391.369) (-2360.105) (-2388.928) [-2358.914] * (-2364.574) (-2374.000) (-2377.853) [-2361.107] -- 0:02:13
894000 -- (-2354.729) (-2367.589) (-2363.389) [-2357.290] * (-2360.256) (-2368.933) [-2350.732] (-2377.587) -- 0:02:12
895000 -- (-2364.757) (-2368.192) (-2376.976) [-2353.702] * (-2382.954) (-2367.573) [-2346.926] (-2370.489) -- 0:02:11
Average standard deviation of split frequencies: 0.007662
896000 -- [-2362.143] (-2369.040) (-2356.621) (-2368.202) * (-2368.984) (-2379.552) [-2355.065] (-2396.664) -- 0:02:09
897000 -- [-2363.092] (-2366.090) (-2376.389) (-2371.677) * (-2364.117) (-2368.138) [-2360.626] (-2372.353) -- 0:02:08
898000 -- (-2390.775) [-2355.524] (-2353.287) (-2376.322) * [-2366.334] (-2372.966) (-2348.099) (-2377.789) -- 0:02:07
899000 -- (-2381.170) [-2360.943] (-2353.081) (-2365.368) * (-2365.208) (-2377.343) (-2361.844) [-2365.746] -- 0:02:06
900000 -- [-2349.654] (-2355.300) (-2376.399) (-2373.204) * [-2361.264] (-2372.395) (-2358.781) (-2366.751) -- 0:02:04
Average standard deviation of split frequencies: 0.007565
901000 -- (-2369.877) (-2365.436) (-2359.884) [-2364.665] * (-2356.504) [-2364.725] (-2376.472) (-2350.979) -- 0:02:03
902000 -- (-2368.478) [-2362.546] (-2362.155) (-2381.284) * [-2352.992] (-2369.982) (-2362.050) (-2372.982) -- 0:02:02
903000 -- (-2356.239) (-2360.823) (-2366.952) [-2360.834] * [-2362.546] (-2366.583) (-2373.631) (-2358.220) -- 0:02:01
904000 -- (-2358.569) (-2378.961) [-2368.550] (-2359.158) * (-2358.539) (-2371.054) (-2361.355) [-2354.594] -- 0:01:59
905000 -- (-2359.559) [-2354.831] (-2380.173) (-2367.054) * (-2352.969) (-2369.768) [-2354.001] (-2390.173) -- 0:01:58
Average standard deviation of split frequencies: 0.007140
906000 -- (-2369.094) [-2352.608] (-2381.206) (-2375.947) * (-2359.786) (-2362.155) [-2363.242] (-2399.378) -- 0:01:57
907000 -- (-2370.692) (-2379.512) (-2363.972) [-2356.823] * [-2354.614] (-2366.903) (-2355.780) (-2372.258) -- 0:01:56
908000 -- (-2381.944) [-2352.834] (-2379.885) (-2365.754) * [-2360.599] (-2351.239) (-2353.681) (-2367.099) -- 0:01:54
909000 -- (-2359.779) [-2356.902] (-2369.671) (-2369.714) * (-2364.863) (-2374.598) (-2359.387) [-2353.978] -- 0:01:53
910000 -- (-2370.354) [-2359.307] (-2379.377) (-2359.450) * (-2374.131) (-2372.528) (-2374.931) [-2360.626] -- 0:01:52
Average standard deviation of split frequencies: 0.007247
911000 -- (-2365.533) (-2363.963) [-2365.632] (-2364.328) * (-2381.864) [-2361.875] (-2356.503) (-2358.901) -- 0:01:51
912000 -- (-2375.460) (-2365.000) [-2359.504] (-2370.532) * (-2373.911) (-2361.179) [-2358.889] (-2377.623) -- 0:01:50
913000 -- (-2373.755) (-2382.085) (-2361.549) [-2355.979] * (-2351.302) (-2374.873) [-2353.263] (-2356.907) -- 0:01:48
914000 -- [-2358.103] (-2357.030) (-2393.929) (-2366.248) * (-2366.730) [-2359.966] (-2371.344) (-2371.863) -- 0:01:47
915000 -- [-2364.164] (-2353.203) (-2407.618) (-2383.408) * [-2358.237] (-2364.623) (-2359.356) (-2375.349) -- 0:01:46
Average standard deviation of split frequencies: 0.007110
916000 -- (-2365.199) (-2372.425) (-2378.630) [-2369.095] * (-2365.622) [-2346.010] (-2365.838) (-2380.870) -- 0:01:45
917000 -- (-2358.659) [-2349.729] (-2369.828) (-2365.349) * (-2379.298) (-2362.925) (-2384.426) [-2357.340] -- 0:01:43
918000 -- (-2361.942) (-2353.100) (-2368.514) [-2352.819] * (-2376.874) (-2372.996) (-2377.255) [-2357.829] -- 0:01:42
919000 -- (-2356.650) [-2353.077] (-2379.528) (-2368.411) * [-2369.029] (-2367.212) (-2394.985) (-2356.248) -- 0:01:41
920000 -- [-2344.423] (-2357.039) (-2363.781) (-2374.290) * (-2367.249) (-2370.086) (-2371.472) [-2353.152] -- 0:01:40
Average standard deviation of split frequencies: 0.006830
921000 -- [-2341.726] (-2367.420) (-2372.081) (-2362.409) * (-2363.819) (-2365.967) (-2360.212) [-2358.599] -- 0:01:38
922000 -- (-2359.243) (-2384.537) [-2370.031] (-2367.696) * (-2380.249) (-2366.742) [-2352.830] (-2358.143) -- 0:01:37
923000 -- (-2370.999) (-2366.290) (-2366.851) [-2367.670] * (-2381.655) [-2360.408] (-2359.042) (-2367.924) -- 0:01:36
924000 -- (-2378.335) (-2365.409) [-2358.185] (-2354.088) * (-2382.403) [-2353.985] (-2369.950) (-2372.760) -- 0:01:34
925000 -- (-2364.007) [-2362.562] (-2366.406) (-2367.330) * [-2354.016] (-2361.023) (-2373.500) (-2362.072) -- 0:01:33
Average standard deviation of split frequencies: 0.006845
926000 -- (-2383.509) (-2379.506) (-2352.775) [-2364.081] * (-2357.116) [-2364.129] (-2367.030) (-2362.518) -- 0:01:32
927000 -- (-2372.342) (-2366.885) (-2369.702) [-2350.179] * (-2359.013) (-2371.436) (-2374.213) [-2355.158] -- 0:01:31
928000 -- (-2372.694) (-2375.627) (-2367.556) [-2351.672] * (-2367.148) (-2351.125) (-2374.480) [-2356.169] -- 0:01:29
929000 -- (-2381.071) (-2359.668) (-2377.597) [-2365.864] * [-2359.090] (-2362.206) (-2386.192) (-2371.147) -- 0:01:28
930000 -- (-2361.067) (-2381.444) (-2372.165) [-2373.614] * (-2368.577) (-2357.513) [-2368.362] (-2362.044) -- 0:01:27
Average standard deviation of split frequencies: 0.007045
931000 -- [-2357.397] (-2372.710) (-2364.988) (-2373.119) * (-2358.437) (-2356.823) [-2357.427] (-2369.597) -- 0:01:26
932000 -- (-2363.605) (-2379.442) [-2350.638] (-2380.968) * (-2357.788) (-2378.963) (-2360.261) [-2366.435] -- 0:01:24
933000 -- (-2356.408) (-2386.043) (-2363.210) [-2360.804] * (-2362.904) (-2371.515) (-2356.565) [-2352.134] -- 0:01:23
934000 -- [-2359.961] (-2369.816) (-2373.348) (-2377.900) * (-2369.891) (-2357.882) (-2377.962) [-2356.608] -- 0:01:22
935000 -- (-2358.499) (-2364.021) [-2366.878] (-2360.714) * (-2383.290) [-2361.494] (-2387.993) (-2364.667) -- 0:01:21
Average standard deviation of split frequencies: 0.007113
936000 -- (-2367.380) (-2364.188) [-2366.230] (-2365.177) * (-2355.019) [-2361.128] (-2382.230) (-2370.981) -- 0:01:19
937000 -- (-2381.406) (-2358.529) (-2371.596) [-2358.573] * (-2382.675) (-2363.089) (-2372.684) [-2358.795] -- 0:01:18
938000 -- [-2356.830] (-2380.710) (-2353.072) (-2361.462) * (-2372.318) [-2370.003] (-2372.331) (-2356.207) -- 0:01:17
939000 -- [-2370.343] (-2374.227) (-2362.375) (-2366.859) * (-2378.001) (-2373.761) (-2372.776) [-2361.326] -- 0:01:16
940000 -- (-2380.762) (-2365.663) [-2354.252] (-2365.688) * (-2360.744) (-2381.758) [-2373.014] (-2369.866) -- 0:01:14
Average standard deviation of split frequencies: 0.007170
941000 -- (-2382.703) (-2363.538) (-2364.368) [-2365.001] * (-2349.525) (-2372.738) (-2367.277) [-2368.621] -- 0:01:13
942000 -- (-2378.739) (-2347.212) [-2362.167] (-2374.585) * (-2359.213) (-2379.538) (-2382.103) [-2368.533] -- 0:01:12
943000 -- [-2363.603] (-2361.376) (-2375.705) (-2370.278) * (-2363.508) (-2362.805) [-2362.267] (-2381.860) -- 0:01:11
944000 -- (-2358.695) (-2372.638) [-2356.563] (-2368.499) * (-2366.376) [-2359.518] (-2374.153) (-2356.278) -- 0:01:09
945000 -- (-2370.425) (-2351.202) [-2353.936] (-2375.135) * [-2347.587] (-2367.601) (-2374.361) (-2375.796) -- 0:01:08
Average standard deviation of split frequencies: 0.007398
946000 -- (-2366.267) [-2349.581] (-2355.563) (-2374.226) * [-2359.420] (-2390.145) (-2364.267) (-2375.406) -- 0:01:07
947000 -- (-2372.631) [-2348.952] (-2354.381) (-2367.913) * (-2367.096) (-2400.807) [-2358.940] (-2368.498) -- 0:01:06
948000 -- (-2383.313) (-2353.627) (-2376.285) [-2360.089] * (-2368.157) [-2373.271] (-2367.088) (-2373.163) -- 0:01:04
949000 -- (-2353.924) (-2370.504) (-2368.896) [-2355.570] * [-2358.123] (-2375.524) (-2374.852) (-2362.296) -- 0:01:03
950000 -- [-2363.369] (-2376.270) (-2347.738) (-2380.497) * [-2349.473] (-2358.495) (-2375.516) (-2371.647) -- 0:01:02
Average standard deviation of split frequencies: 0.007461
951000 -- (-2350.577) (-2368.439) (-2368.471) [-2362.640] * (-2367.735) (-2363.454) (-2359.730) [-2365.080] -- 0:01:01
952000 -- [-2350.309] (-2362.360) (-2374.561) (-2367.139) * (-2384.724) (-2361.172) [-2361.058] (-2366.466) -- 0:00:59
953000 -- (-2374.473) (-2356.220) [-2379.841] (-2369.913) * (-2384.629) (-2370.108) [-2355.290] (-2359.107) -- 0:00:58
954000 -- (-2363.887) (-2353.443) [-2350.506] (-2387.869) * (-2364.180) [-2344.875] (-2363.091) (-2388.772) -- 0:00:57
955000 -- (-2367.028) [-2356.603] (-2360.578) (-2362.722) * (-2366.284) (-2366.543) (-2358.167) [-2358.989] -- 0:00:56
Average standard deviation of split frequencies: 0.007472
956000 -- (-2375.879) (-2367.892) [-2374.559] (-2382.856) * (-2364.725) (-2357.227) (-2365.586) [-2357.035] -- 0:00:54
957000 -- (-2358.423) (-2361.301) (-2377.409) [-2362.465] * [-2357.167] (-2361.069) (-2373.268) (-2363.715) -- 0:00:53
958000 -- [-2368.407] (-2373.043) (-2371.591) (-2365.632) * [-2351.270] (-2361.410) (-2386.881) (-2377.698) -- 0:00:52
959000 -- (-2358.459) (-2386.192) [-2354.452] (-2360.262) * (-2365.929) [-2360.089] (-2377.623) (-2369.226) -- 0:00:51
960000 -- (-2373.801) (-2366.382) [-2354.993] (-2364.457) * [-2359.427] (-2369.950) (-2364.259) (-2380.258) -- 0:00:49
Average standard deviation of split frequencies: 0.007451
961000 -- (-2358.032) (-2379.582) [-2360.170] (-2361.807) * (-2382.205) (-2364.524) [-2368.700] (-2373.605) -- 0:00:48
962000 -- (-2372.152) [-2363.785] (-2372.354) (-2355.339) * (-2365.440) [-2349.135] (-2361.754) (-2362.095) -- 0:00:47
963000 -- [-2346.356] (-2354.427) (-2371.308) (-2375.951) * (-2367.582) (-2361.375) (-2365.000) [-2367.725] -- 0:00:46
964000 -- [-2348.873] (-2367.163) (-2376.842) (-2368.278) * (-2373.011) (-2355.425) [-2361.693] (-2355.677) -- 0:00:44
965000 -- (-2348.192) (-2380.681) (-2373.568) [-2351.941] * (-2369.142) [-2344.576] (-2367.834) (-2379.073) -- 0:00:43
Average standard deviation of split frequencies: 0.007365
966000 -- (-2383.497) (-2371.499) (-2379.965) [-2361.566] * (-2376.585) [-2352.668] (-2373.038) (-2376.318) -- 0:00:42
967000 -- (-2373.109) (-2366.536) (-2357.624) [-2357.336] * (-2364.638) [-2360.466] (-2372.469) (-2377.367) -- 0:00:41
968000 -- (-2366.935) [-2351.936] (-2365.021) (-2359.028) * (-2361.612) [-2346.546] (-2357.614) (-2361.228) -- 0:00:39
969000 -- (-2388.675) [-2367.174] (-2367.555) (-2371.207) * (-2355.638) (-2359.329) (-2368.177) [-2365.993] -- 0:00:38
970000 -- (-2366.202) (-2366.074) (-2377.565) [-2358.282] * (-2359.839) [-2360.139] (-2362.666) (-2366.124) -- 0:00:37
Average standard deviation of split frequencies: 0.007486
971000 -- (-2367.257) [-2352.393] (-2385.638) (-2363.819) * (-2354.427) [-2363.895] (-2369.988) (-2370.638) -- 0:00:36
972000 -- (-2395.396) (-2365.645) [-2367.473] (-2380.399) * (-2362.849) (-2364.954) (-2364.005) [-2355.112] -- 0:00:34
973000 -- (-2372.355) [-2359.923] (-2369.728) (-2364.771) * (-2374.410) (-2388.459) (-2360.802) [-2362.758] -- 0:00:33
974000 -- (-2365.883) [-2357.950] (-2390.101) (-2364.808) * (-2366.778) (-2371.549) [-2352.193] (-2362.892) -- 0:00:32
975000 -- (-2356.555) (-2371.092) (-2360.016) [-2353.417] * (-2355.206) [-2355.936] (-2374.629) (-2352.004) -- 0:00:31
Average standard deviation of split frequencies: 0.007579
976000 -- [-2365.988] (-2367.546) (-2369.948) (-2366.694) * (-2359.714) [-2359.659] (-2369.224) (-2363.208) -- 0:00:29
977000 -- [-2356.663] (-2375.633) (-2367.726) (-2369.664) * (-2383.568) (-2355.465) (-2374.951) [-2346.364] -- 0:00:28
978000 -- [-2388.409] (-2359.105) (-2363.940) (-2366.980) * [-2359.648] (-2364.696) (-2364.326) (-2353.048) -- 0:00:27
979000 -- (-2368.165) (-2373.942) [-2358.213] (-2377.328) * (-2364.451) (-2359.317) [-2354.539] (-2366.684) -- 0:00:26
980000 -- [-2364.289] (-2357.021) (-2367.532) (-2386.227) * (-2364.385) (-2369.409) (-2370.380) [-2354.544] -- 0:00:24
Average standard deviation of split frequencies: 0.007676
981000 -- (-2360.140) (-2359.296) [-2354.257] (-2391.662) * (-2378.172) (-2369.245) (-2354.322) [-2362.093] -- 0:00:23
982000 -- [-2362.726] (-2360.378) (-2376.506) (-2371.005) * (-2404.295) [-2361.193] (-2378.973) (-2358.753) -- 0:00:22
983000 -- (-2365.218) [-2356.393] (-2382.857) (-2374.699) * (-2382.225) [-2357.836] (-2370.018) (-2369.294) -- 0:00:21
984000 -- [-2359.260] (-2359.471) (-2359.778) (-2362.930) * (-2370.769) [-2370.703] (-2361.413) (-2363.030) -- 0:00:19
985000 -- (-2355.352) (-2363.885) [-2362.617] (-2377.916) * [-2368.381] (-2364.743) (-2364.716) (-2367.957) -- 0:00:18
Average standard deviation of split frequencies: 0.007407
986000 -- (-2382.306) (-2374.740) (-2368.276) [-2355.118] * (-2369.751) [-2358.576] (-2371.354) (-2363.444) -- 0:00:17
987000 -- (-2372.821) (-2376.477) (-2362.021) [-2350.848] * (-2366.783) (-2358.530) (-2360.914) [-2358.580] -- 0:00:16
988000 -- (-2361.759) (-2373.175) [-2359.968] (-2370.539) * (-2362.504) (-2361.785) (-2360.866) [-2366.349] -- 0:00:14
989000 -- (-2380.205) [-2355.096] (-2380.705) (-2371.507) * (-2360.822) [-2357.963] (-2366.618) (-2386.269) -- 0:00:13
990000 -- (-2370.298) (-2342.997) (-2378.565) [-2353.481] * (-2383.229) (-2352.327) [-2378.422] (-2374.844) -- 0:00:12
Average standard deviation of split frequencies: 0.007174
991000 -- (-2379.156) [-2360.151] (-2394.339) (-2365.456) * [-2355.592] (-2359.743) (-2374.735) (-2368.251) -- 0:00:11
992000 -- (-2366.488) (-2380.184) (-2387.454) [-2366.218] * [-2368.873] (-2369.426) (-2356.408) (-2375.725) -- 0:00:09
993000 -- (-2360.097) (-2361.764) (-2376.448) [-2353.894] * (-2365.309) (-2360.033) [-2349.998] (-2366.003) -- 0:00:08
994000 -- (-2355.570) [-2362.530] (-2360.979) (-2357.170) * [-2362.223] (-2357.659) (-2373.605) (-2379.584) -- 0:00:07
995000 -- [-2355.239] (-2360.253) (-2369.823) (-2384.883) * [-2352.919] (-2361.527) (-2387.536) (-2366.638) -- 0:00:06
Average standard deviation of split frequencies: 0.007048
996000 -- (-2367.158) (-2353.939) (-2367.914) [-2360.375] * [-2349.123] (-2371.164) (-2370.467) (-2364.611) -- 0:00:04
997000 -- (-2373.739) (-2366.886) (-2370.234) [-2345.243] * (-2371.431) [-2353.690] (-2375.765) (-2371.456) -- 0:00:03
998000 -- (-2368.031) (-2364.293) (-2357.870) [-2349.568] * [-2356.998] (-2371.896) (-2372.108) (-2355.250) -- 0:00:02
999000 -- (-2356.426) (-2369.498) [-2367.190] (-2366.972) * (-2368.846) [-2356.750] (-2354.886) (-2361.492) -- 0:00:01
1000000 -- [-2346.561] (-2370.140) (-2364.962) (-2361.645) * (-2377.933) [-2376.424] (-2365.777) (-2381.512) -- 0:00:00
Average standard deviation of split frequencies: 0.006791
Analysis completed in 20 mins 49 seconds
Analysis used 1247.46 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -2336.40
Likelihood of best state for "cold" chain of run 2 was -2336.31
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
42.3 % ( 34 %) Dirichlet(Revmat{all})
57.6 % ( 40 %) Slider(Revmat{all})
25.9 % ( 28 %) Dirichlet(Pi{all})
27.7 % ( 26 %) Slider(Pi{all})
48.2 % ( 20 %) Multiplier(Alpha{1,2})
52.3 % ( 33 %) Multiplier(Alpha{3})
62.4 % ( 38 %) Slider(Pinvar{all})
32.3 % ( 23 %) ExtSPR(Tau{all},V{all})
21.7 % ( 30 %) ExtTBR(Tau{all},V{all})
37.6 % ( 34 %) NNI(Tau{all},V{all})
32.0 % ( 37 %) ParsSPR(Tau{all},V{all})
27.1 % ( 27 %) Multiplier(V{all})
51.4 % ( 49 %) Nodeslider(V{all})
25.2 % ( 26 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
42.2 % ( 31 %) Dirichlet(Revmat{all})
58.1 % ( 48 %) Slider(Revmat{all})
25.9 % ( 27 %) Dirichlet(Pi{all})
28.3 % ( 29 %) Slider(Pi{all})
47.2 % ( 23 %) Multiplier(Alpha{1,2})
51.9 % ( 34 %) Multiplier(Alpha{3})
62.2 % ( 48 %) Slider(Pinvar{all})
32.1 % ( 30 %) ExtSPR(Tau{all},V{all})
21.7 % ( 23 %) ExtTBR(Tau{all},V{all})
37.4 % ( 34 %) NNI(Tau{all},V{all})
32.0 % ( 30 %) ParsSPR(Tau{all},V{all})
27.2 % ( 21 %) Multiplier(V{all})
51.5 % ( 50 %) Nodeslider(V{all})
25.1 % ( 25 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.56 0.26 0.10
2 | 166595 0.58 0.29
3 | 166439 167167 0.61
4 | 167039 166538 166222
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.56 0.26 0.11
2 | 166685 0.59 0.30
3 | 166736 166789 0.61
4 | 166783 166379 166628
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -2354.46
| 1 1 2 21 |
| 1|
| 11 * 2 |
| 12 2 1 1 1 1 2 |
|1 2 * 21 2 1 21 * 2 |
| 1 2 1 2 111 2 1 2 1 1 1 11 1 |
| 12 1 1 *212 1 2 2 2 11 222 2|
|2 *2 1 1*2 2 2 2 221*2 2 *1 1 * 2 |
| 22 1 1 * 1 2 2 1 |
| 2 2 2 2 2 1 |
| 2 1 2 1 2 * 1 |
| 2 1 |
| |
| |
| 1 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -2364.54
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -2344.89 -2383.32
2 -2343.70 -2375.58
--------------------------------------
TOTAL -2344.13 -2382.62
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.456464 0.001869 0.374098 0.538351 0.454159 932.54 1216.77 1.000
r(A<->C){all} 0.120457 0.000604 0.071226 0.167809 0.119123 883.42 885.56 1.000
r(A<->G){all} 0.282372 0.001399 0.210266 0.355270 0.281822 671.60 732.72 1.000
r(A<->T){all} 0.046773 0.000148 0.025730 0.070824 0.045955 1035.11 1054.67 1.000
r(C<->G){all} 0.058909 0.000497 0.021058 0.104925 0.056914 608.59 698.02 1.000
r(C<->T){all} 0.438620 0.001654 0.361310 0.517211 0.438733 447.61 556.22 1.000
r(G<->T){all} 0.052870 0.000210 0.025903 0.080814 0.051682 940.61 962.90 1.001
pi(A){all} 0.282581 0.000236 0.254312 0.313861 0.282287 1100.89 1147.25 1.001
pi(C){all} 0.170744 0.000163 0.144672 0.194130 0.170376 1069.96 1080.78 1.001
pi(G){all} 0.190468 0.000180 0.164190 0.215014 0.190072 841.81 956.63 1.000
pi(T){all} 0.356207 0.000270 0.324715 0.388956 0.356727 988.81 1039.46 1.001
alpha{1,2} 0.746113 0.261338 0.176924 1.816016 0.597796 638.85 753.36 1.001
alpha{3} 1.391806 0.849106 0.296931 3.343927 1.121170 804.38 836.07 1.001
pinvar{all} 0.323031 0.018332 0.037497 0.537164 0.338109 471.33 524.44 1.002
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C67
2 -- C66
3 -- C12
4 -- C69
5 -- C68
6 -- C17
7 -- C76
8 -- C20
9 -- C78
10 -- C26
11 -- C58
12 -- C30
13 -- C60
14 -- C54
15 -- C50
16 -- C37
17 -- C6
18 -- C73
19 -- C86
20 -- C27
21 -- C71
22 -- C46
23 -- C18
24 -- C11
25 -- C81
26 -- C57
27 -- C92
28 -- C5
29 -- C64
30 -- C91
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
------------------------------------
1 -- .*****************************
2 -- .*............................
3 -- ..*...........................
4 -- ...*..........................
5 -- ....*.........................
6 -- .....*........................
7 -- ......*.......................
8 -- .......*......................
9 -- ........*.....................
10 -- .........*....................
11 -- ..........*...................
12 -- ...........*..................
13 -- ............*.................
14 -- .............*................
15 -- ..............*...............
16 -- ...............*..............
17 -- ................*.............
18 -- .................*............
19 -- ..................*...........
20 -- ...................*..........
21 -- ....................*.........
22 -- .....................*........
23 -- ......................*.......
24 -- .......................*......
25 -- ........................*.....
26 -- .........................*....
27 -- ..........................*...
28 -- ...........................*..
29 -- ............................*.
30 -- .............................*
31 -- ................*..........*..
32 -- .........*.........*..........
33 -- .*..........*.................
34 -- .....*.**.............*.......
35 -- ................*......*...*..
36 -- .....****..*...***..*.***..*..
37 -- .*........*.**...........*..*.
38 -- ..........*..............*..*.
39 -- .*.*......*.**...........*..**
40 -- .....*****.*...***.**.***..*..
41 -- ...*.........................*
42 -- .*........*.*............*..*.
43 -- .*.*......*.**...........**.**
44 -- ..*.*.........................
45 -- ..*.******.*...***.**.***..*..
46 -- ......*.........*......*...*..
47 -- ..........*..............*....
48 -- .........................*..*.
49 -- ..........*.................*.
50 -- ...........*...*..............
51 -- .....****..*...**...*.***..*..
52 -- .*.*.*********.***.**.********
53 -- ...........*...**......*...*..
54 -- .....****..*...**.....***..*..
55 -- .....****........*..*.*.*.....
56 -- ..........*..*...........*..*.
57 -- .....*.**.....................
58 -- .................*..*.........
59 -- .....*.*......................
60 -- .....*.*..............*.......
61 -- ........*.............*.......
62 -- ......*........**......*...*..
63 -- .....*..*.....................
64 -- .......*..............*.......
65 -- .......**.............*.......
66 -- ......*.............*.........
67 -- .....*................*.......
68 -- .......**.....................
69 -- ..*..*****.*...***.**.***..*..
70 -- ....******.*...***.**.***..*..
71 -- .....*..*.............*.......
72 -- ......*..........*..*.........
73 -- .....*.**.............*.*.....
74 -- ...........*....*......*...*..
75 -- ......*....*...**......**..*..
76 -- ......*....*...**......*...*..
77 -- ..................*..*........
78 -- ..............*...*...........
79 -- ..............*......*........
80 -- .*************.***************
81 -- .....****......***..*.***..*..
82 -- .********************.********
83 -- .*.*.*********.***.**.****.***
84 -- .*****************.***********
85 -- .....****..*...*.*..*.*.*.....
86 -- ...........*...*........*.....
87 -- .....*.**...........*.*.......
88 -- .*************.***.**.********
89 -- .....*.**........*..*.*.*.....
90 -- .....*.**..*...**.....***..*..
91 -- .....****..*...***....***..*..
92 -- ...........*...**......**..*..
93 -- .....****......*.*..*.*.*.....
94 -- ...............**......*...*..
95 -- .*.*......*.***..........**.**
------------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
31 3002 1.000000 0.000000 1.000000 1.000000 2
32 3002 1.000000 0.000000 1.000000 1.000000 2
33 3002 1.000000 0.000000 1.000000 1.000000 2
34 3002 1.000000 0.000000 1.000000 1.000000 2
35 3002 1.000000 0.000000 1.000000 1.000000 2
36 3002 1.000000 0.000000 1.000000 1.000000 2
37 3002 1.000000 0.000000 1.000000 1.000000 2
38 2998 0.998668 0.001884 0.997335 1.000000 2
39 2996 0.998001 0.001884 0.996669 0.999334 2
40 2934 0.977348 0.001884 0.976016 0.978681 2
41 2665 0.887742 0.003298 0.885410 0.890073 2
42 2137 0.711859 0.005182 0.708195 0.715523 2
43 2127 0.708528 0.005182 0.704863 0.712192 2
44 1884 0.627582 0.016959 0.615590 0.639574 2
45 1713 0.570620 0.008951 0.564290 0.576949 2
46 1021 0.340107 0.003298 0.337775 0.342438 2
47 1003 0.334111 0.003298 0.331779 0.336442 2
48 999 0.332778 0.021199 0.317788 0.347768 2
49 998 0.332445 0.016959 0.320453 0.344437 2
50 946 0.315123 0.015075 0.304464 0.325783 2
51 922 0.307129 0.009422 0.300466 0.313791 2
52 823 0.274151 0.000471 0.273817 0.274484 2
53 717 0.238841 0.001413 0.237841 0.239840 2
54 696 0.231845 0.000942 0.231179 0.232512 2
55 690 0.229847 0.017901 0.217189 0.242505 2
56 675 0.224850 0.000471 0.224517 0.225183 2
57 636 0.211859 0.018844 0.198534 0.225183 2
58 636 0.211859 0.010364 0.204530 0.219187 2
59 635 0.211526 0.001413 0.210526 0.212525 2
60 633 0.210859 0.006124 0.206529 0.215190 2
61 619 0.206196 0.007066 0.201199 0.211193 2
62 610 0.203198 0.002827 0.201199 0.205197 2
63 607 0.202199 0.017430 0.189873 0.214524 2
64 598 0.199201 0.003769 0.196536 0.201865 2
65 583 0.194204 0.006124 0.189873 0.198534 2
66 582 0.193871 0.006595 0.189207 0.198534 2
67 581 0.193538 0.011777 0.185210 0.201865 2
68 574 0.191206 0.005653 0.187209 0.195203 2
69 550 0.183211 0.011306 0.175217 0.191206 2
70 545 0.181546 0.006124 0.177215 0.185876 2
71 538 0.179214 0.007537 0.173884 0.184544 2
72 491 0.163558 0.008951 0.157229 0.169887 2
73 468 0.155896 0.007537 0.150566 0.161226 2
74 442 0.147235 0.000000 0.147235 0.147235 2
75 441 0.146902 0.008009 0.141239 0.152565 2
76 438 0.145903 0.019786 0.131912 0.159893 2
77 430 0.143238 0.004711 0.139907 0.146569 2
78 417 0.138907 0.009893 0.131912 0.145903 2
79 408 0.135909 0.017901 0.123251 0.148568 2
80 405 0.134910 0.004240 0.131912 0.137908 2
81 385 0.128248 0.002355 0.126582 0.129913 2
82 384 0.127915 0.009422 0.121252 0.134577 2
83 382 0.127249 0.005653 0.123251 0.131246 2
84 375 0.124917 0.002355 0.123251 0.126582 2
85 373 0.124250 0.009893 0.117255 0.131246 2
86 367 0.122252 0.008009 0.116589 0.127915 2
87 365 0.121586 0.010835 0.113924 0.129247 2
88 362 0.120586 0.000000 0.120586 0.120586 2
89 353 0.117588 0.012719 0.108594 0.126582 2
90 336 0.111925 0.010364 0.104597 0.119254 2
91 334 0.111259 0.013191 0.101932 0.120586 2
92 321 0.106929 0.003298 0.104597 0.109260 2
93 315 0.104930 0.010835 0.097268 0.112592 2
94 307 0.102265 0.002355 0.100600 0.103931 2
95 303 0.100933 0.000471 0.100600 0.101266 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.001225 0.000002 0.000001 0.003737 0.000821 1.000 2
length{all}[2] 0.001192 0.000002 0.000000 0.003637 0.000802 1.000 2
length{all}[3] 0.001199 0.000001 0.000001 0.003584 0.000837 1.001 2
length{all}[4] 0.005091 0.000007 0.000786 0.010038 0.004651 1.000 2
length{all}[5] 0.001224 0.000002 0.000001 0.003883 0.000815 1.000 2
length{all}[6] 0.001306 0.000002 0.000000 0.003818 0.000916 1.000 2
length{all}[7] 0.020434 0.000040 0.009107 0.033163 0.019713 1.001 2
length{all}[8] 0.001284 0.000002 0.000000 0.003834 0.000875 1.000 2
length{all}[9] 0.001287 0.000002 0.000000 0.003873 0.000866 1.000 2
length{all}[10] 0.002617 0.000006 0.000001 0.007308 0.001943 1.000 2
length{all}[11] 0.001197 0.000001 0.000001 0.003486 0.000833 1.000 2
length{all}[12] 0.015586 0.000028 0.006014 0.026138 0.014921 1.001 2
length{all}[13] 0.001184 0.000001 0.000000 0.003572 0.000827 1.000 2
length{all}[14] 0.002644 0.000004 0.000048 0.006208 0.002213 1.000 2
length{all}[15] 0.001162 0.000001 0.000000 0.003392 0.000788 1.002 2
length{all}[16] 0.016185 0.000026 0.007165 0.026321 0.015777 1.000 2
length{all}[17] 0.001340 0.000002 0.000000 0.004132 0.000922 1.000 2
length{all}[18] 0.008940 0.000017 0.001031 0.016709 0.008560 1.001 2
length{all}[19] 0.001201 0.000002 0.000000 0.003594 0.000832 1.001 2
length{all}[20] 0.002843 0.000006 0.000001 0.007789 0.002155 1.000 2
length{all}[21] 0.021316 0.000037 0.009591 0.032597 0.020649 1.001 2
length{all}[22] 0.001213 0.000002 0.000000 0.003630 0.000818 1.000 2
length{all}[23] 0.001271 0.000002 0.000000 0.003912 0.000861 1.000 2
length{all}[24] 0.001439 0.000002 0.000000 0.004368 0.000955 1.000 2
length{all}[25] 0.013900 0.000022 0.005491 0.023651 0.013386 1.000 2
length{all}[26] 0.001195 0.000001 0.000000 0.003522 0.000834 1.001 2
length{all}[27] 0.001301 0.000002 0.000000 0.003878 0.000894 1.000 2
length{all}[28] 0.001338 0.000002 0.000000 0.003993 0.000907 1.000 2
length{all}[29] 0.003733 0.000005 0.000349 0.008267 0.003270 1.000 2
length{all}[30] 0.001279 0.000002 0.000001 0.003792 0.000879 1.000 2
length{all}[31] 0.023623 0.000039 0.012634 0.036074 0.022993 1.001 2
length{all}[32] 0.023819 0.000067 0.008973 0.040167 0.022966 1.000 2
length{all}[33] 0.007185 0.000009 0.002290 0.013089 0.006751 1.000 2
length{all}[34] 0.020471 0.000035 0.009495 0.032349 0.019873 1.000 2
length{all}[35] 0.030435 0.000057 0.016310 0.044985 0.029658 1.000 2
length{all}[36] 0.123754 0.000414 0.081647 0.160755 0.122923 1.000 2
length{all}[37] 0.020525 0.000031 0.010869 0.031760 0.020006 1.001 2
length{all}[38] 0.003876 0.000005 0.000554 0.008450 0.003495 1.000 2
length{all}[39] 0.007572 0.000011 0.001866 0.013669 0.007154 1.000 2
length{all}[40] 0.016925 0.000067 0.002686 0.032566 0.015839 1.000 2
length{all}[41] 0.002549 0.000004 0.000018 0.006282 0.002097 1.000 2
length{all}[42] 0.002411 0.000003 0.000004 0.005852 0.002021 1.000 2
length{all}[43] 0.002285 0.000003 0.000006 0.005556 0.001884 1.000 2
length{all}[44] 0.002059 0.000003 0.000000 0.005656 0.001577 1.000 2
length{all}[45] 0.002412 0.000003 0.000023 0.005817 0.001982 1.000 2
length{all}[46] 0.005539 0.000012 0.000058 0.011842 0.005044 1.001 2
length{all}[47] 0.001280 0.000002 0.000002 0.003808 0.000932 0.999 2
length{all}[48] 0.001189 0.000001 0.000000 0.003548 0.000792 1.000 2
length{all}[49] 0.001188 0.000002 0.000002 0.003539 0.000835 0.999 2
length{all}[50] 0.004823 0.000010 0.000004 0.010804 0.004319 0.999 2
length{all}[51] 0.005664 0.000014 0.000001 0.012815 0.004971 1.004 2
length{all}[52] 0.002435 0.000003 0.000008 0.006012 0.002002 0.999 2
length{all}[53] 0.005031 0.000010 0.000106 0.011015 0.004497 1.000 2
length{all}[54] 0.003495 0.000006 0.000025 0.008506 0.003017 0.999 2
length{all}[55] 0.005506 0.000008 0.000164 0.010876 0.005007 1.000 2
length{all}[56] 0.002044 0.000003 0.000005 0.004997 0.001609 1.001 2
length{all}[57] 0.001299 0.000002 0.000006 0.003968 0.000898 0.999 2
length{all}[58] 0.003259 0.000006 0.000027 0.008027 0.002762 0.998 2
length{all}[59] 0.001309 0.000002 0.000002 0.004113 0.000912 0.999 2
length{all}[60] 0.001232 0.000001 0.000000 0.003704 0.000866 0.999 2
length{all}[61] 0.001326 0.000002 0.000002 0.004121 0.000932 0.998 2
length{all}[62] 0.004894 0.000009 0.000230 0.010851 0.004381 1.001 2
length{all}[63] 0.001234 0.000002 0.000001 0.004133 0.000843 0.998 2
length{all}[64] 0.001295 0.000001 0.000004 0.003864 0.000974 1.001 2
length{all}[65] 0.001330 0.000002 0.000001 0.004129 0.000876 1.001 2
length{all}[66] 0.003893 0.000007 0.000028 0.009236 0.003418 0.999 2
length{all}[67] 0.001319 0.000002 0.000002 0.003709 0.000954 0.999 2
length{all}[68] 0.001278 0.000002 0.000001 0.003744 0.000897 1.000 2
length{all}[69] 0.001197 0.000001 0.000001 0.003458 0.000800 0.999 2
length{all}[70] 0.001246 0.000001 0.000002 0.003673 0.000895 0.998 2
length{all}[71] 0.001312 0.000002 0.000002 0.003773 0.000905 0.999 2
length{all}[72] 0.003574 0.000007 0.000008 0.008364 0.003038 0.998 2
length{all}[73] 0.002393 0.000005 0.000010 0.006801 0.001697 1.000 2
length{all}[74] 0.003119 0.000006 0.000006 0.007947 0.002630 0.998 2
length{all}[75] 0.003316 0.000007 0.000034 0.008458 0.002699 0.999 2
length{all}[76] 0.004079 0.000009 0.000073 0.009999 0.003500 0.998 2
length{all}[77] 0.001149 0.000001 0.000000 0.003299 0.000807 1.002 2
length{all}[78] 0.001230 0.000002 0.000007 0.003530 0.000772 1.000 2
length{all}[79] 0.001255 0.000002 0.000000 0.003574 0.000863 0.998 2
length{all}[80] 0.001183 0.000001 0.000002 0.003381 0.000884 1.002 2
length{all}[81] 0.004582 0.000012 0.000006 0.010785 0.003914 0.998 2
length{all}[82] 0.001214 0.000002 0.000004 0.003844 0.000771 0.998 2
length{all}[83] 0.001974 0.000003 0.000006 0.005201 0.001593 0.997 2
length{all}[84] 0.001267 0.000002 0.000001 0.003390 0.000960 0.997 2
length{all}[85] 0.005398 0.000018 0.000003 0.013518 0.004391 1.008 2
length{all}[86] 0.003682 0.000007 0.000057 0.008522 0.003133 0.998 2
length{all}[87] 0.002762 0.000004 0.000047 0.006449 0.002220 0.999 2
length{all}[88] 0.001217 0.000001 0.000002 0.003540 0.000865 0.997 2
length{all}[89] 0.003869 0.000007 0.000026 0.008638 0.003454 0.998 2
length{all}[90] 0.003557 0.000007 0.000019 0.008842 0.002894 1.005 2
length{all}[91] 0.004974 0.000014 0.000001 0.011976 0.004515 1.006 2
length{all}[92] 0.003607 0.000008 0.000004 0.008983 0.002917 0.997 2
length{all}[93] 0.003378 0.000007 0.000004 0.008673 0.002701 0.997 2
length{all}[94] 0.002898 0.000006 0.000002 0.007680 0.002268 0.998 2
length{all}[95] 0.001183 0.000002 0.000006 0.003505 0.000752 0.997 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.006791
Maximum standard deviation of split frequencies = 0.021199
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.008
Clade credibility values:
/---------------------------------------------------------------------- C67 (1)
|
|---------------------------------------------------------------------- C50 (15)
|
|---------------------------------------------------------------------- C86 (19)
|
|---------------------------------------------------------------------- C46 (22)
|
| /------------ C66 (2)
| /----100---+
| | \------------ C60 (13)
| |
| /-----71----+ /------------ C58 (11)
| | | |
| | \----100---+------------ C57 (26)
| /----100----+ |
| | | \------------ C64 (29)
| | |
| /----100---+ \----------------------------------- C54 (14)
| | |
+ | | /------------ C69 (4)
|-----71----+ \----------------89----------------+
| | \------------ C91 (30)
| |
| \---------------------------------------------------------- C92 (27)
|
| /------------ C12 (3)
| /----------------------63---------------------+
| | \------------ C68 (5)
| |
| | /------------ C17 (6)
| | |
| | |------------ C20 (8)
| | /----------100---------+
| | | |------------ C78 (9)
| | | |
| | | \------------ C18 (23)
| | |
| | |----------------------------------- C76 (7)
\-----57----+ |
| |----------------------------------- C30 (12)
| |
| |----------------------------------- C37 (16)
| |
| /----100----+ /------------ C6 (17)
| | | /----100---+
| | | | \------------ C5 (28)
| | |----100----+
| | | \----------------------- C11 (24)
| | |
| | |----------------------------------- C73 (18)
\----98----+ |
| |----------------------------------- C71 (21)
| |
| \----------------------------------- C81 (25)
|
| /------------ C26 (10)
\----------------100---------------+
\------------ C27 (20)
Phylogram (based on average branch lengths):
/ C67 (1)
|
| C50 (15)
|
| C86 (19)
|
| C46 (22)
|
| / C66 (2)
| /--+
| | \ C60 (13)
| |
| | / C58 (11)
| | |
| |-+ C57 (26)
| /-------+ |
| | | \- C64 (29)
| | |
|/-+ \ C54 (14)
|| |
+| |/-- C69 (4)
|+ \+
|| \ C91 (30)
||
|\ C92 (27)
|
|/- C12 (3)
||
||- C68 (5)
||
|| / C17 (6)
|| |
|| | C20 (8)
|| /-------+
|| | | C78 (9)
|| | |
|| | \ C18 (23)
|| |
|| |-------- C76 (7)
\+ |
| |------ C30 (12)
| |
| |------ C37 (16)
| |
| /-------------------------------------------+ / C6 (17)
| | | /--------+
| | | | \ C5 (28)
| | |----------+
| | | \- C11 (24)
| | |
| | |---- C73 (18)
\-----+ |
| |-------- C71 (21)
| |
| \----- C81 (25)
|
| /- C26 (10)
\-------+
\- C27 (20)
|-----------------| 0.050 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3002 trees sampled):
50 % credible set contains 1501 trees
90 % credible set contains 2702 trees
95 % credible set contains 2852 trees
99 % credible set contains 2972 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Wed Nov 09 22:46:41 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Thu Nov 10 16:49:22 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/codeml,A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C54 753 sites
reading seq# 2 C37 753 sites
reading seq# 3 C50 753 sites
reading seq# 4 C58 753 sites
reading seq# 5 C73 753 sites
reading seq# 6 C6 753 sites
reading seq# 7 C86 753 sites
reading seq# 8 C60 753 sites
reading seq# 9 C5 753 sites
reading seq#10 C27 753 sites
reading seq#11 C66 753 sites
reading seq#12 C67 753 sites
reading seq#13 C12 753 sites
reading seq#14 C71 753 sites
reading seq#15 C46 753 sites
reading seq#16 C68 753 sites
reading seq#17 C69 753 sites
reading seq#18 C17 753 sites
reading seq#19 C11 753 sites
reading seq#20 C18 753 sites
reading seq#21 C20 753 sites
reading seq#22 C76 753 sites
reading seq#23 C57 753 sites
reading seq#24 C92 753 sites
reading seq#25 C81 753 sites
reading seq#26 C26 753 sites
reading seq#27 C78 753 sites
reading seq#28 C91 753 sites
reading seq#29 C64 753 sites
reading seq#30 C30 753 sitesns = 30 ls = 753
Reading sequences, sequential format..
Reading seq # 1: C54
Reading seq # 2: C37
Reading seq # 3: C50
Reading seq # 4: C58
Reading seq # 5: C73
Reading seq # 6: C6
Reading seq # 7: C86
Reading seq # 8: C60
Reading seq # 9: C5
Reading seq #10: C27
Reading seq #11: C66
Reading seq #12: C67
Reading seq #13: C12
Reading seq #14: C71
Reading seq #15: C46
Reading seq #16: C68
Reading seq #17: C69
Reading seq #18: C17
Reading seq #19: C11
Reading seq #20: C18
Reading seq #21: C20
Reading seq #22: C76
Reading seq #23: C57
Reading seq #24: C92
Reading seq #25: C81
Reading seq #26: C26
Reading seq #27: C78
Reading seq #28: C91
Reading seq #29: C64
Reading seq #30: C30
Sites with gaps or missing data are removed.
21 ambiguity characters in seq. 1
42 ambiguity characters in seq. 2
21 ambiguity characters in seq. 3
21 ambiguity characters in seq. 4
42 ambiguity characters in seq. 5
102 ambiguity characters in seq. 6
21 ambiguity characters in seq. 7
21 ambiguity characters in seq. 8
102 ambiguity characters in seq. 9
258 ambiguity characters in seq. 10
21 ambiguity characters in seq. 11
21 ambiguity characters in seq. 12
21 ambiguity characters in seq. 13
42 ambiguity characters in seq. 14
21 ambiguity characters in seq. 15
21 ambiguity characters in seq. 16
21 ambiguity characters in seq. 17
42 ambiguity characters in seq. 18
42 ambiguity characters in seq. 19
42 ambiguity characters in seq. 20
42 ambiguity characters in seq. 21
42 ambiguity characters in seq. 22
21 ambiguity characters in seq. 23
21 ambiguity characters in seq. 24
42 ambiguity characters in seq. 25
258 ambiguity characters in seq. 26
42 ambiguity characters in seq. 27
21 ambiguity characters in seq. 28
21 ambiguity characters in seq. 29
42 ambiguity characters in seq. 30
107 sites are removed. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 216 217 218 219 220 221 222 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251
Sequences read..
Counting site patterns.. 0:00
Compressing, 103 patterns at 144 / 144 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 103 patterns at 144 / 144 sites (100.0%), 0:00
Counting codons..
3480 bytes for distance
100528 bytes for conP
9064 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(12, 3, 7, 15, (((((11, 8), (4, 23, 29)), 1), (17, 28)), 24), ((13, 16), (((18, 21, 27, 20), 22, 30, 2, ((6, 9), 19), 5, 14, 25), (26, 10)))); MP score: 128
804224 bytes for conP, adjusted
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
39
0.044306 0.096516 0.013566 0.077480 0.080491 0.050742 0.046159 0.066106 0.080127 0.083737 0.044546 0.053863 0.096576 0.032050 0.101899 0.013497 0.035398 0.013434 0.068785 0.060461 0.067938 0.049245 0.013581 0.012188 0.036623 0.060194 0.092559 0.104298 0.106637 0.046369 0.071837 0.012172 0.093675 0.037468 0.018352 0.101333 0.072456 0.074197 0.052087 0.105084 0.045690 0.056745 0.026695 0.102816 0.028174 0.300000 0.745168 0.453721
ntime & nrate & np: 45 2 48
Bounds (np=48):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 10.564116
np = 48
lnL0 = -1677.885002
Iterating by ming2
Initial: fx= 1677.885002
x= 0.04431 0.09652 0.01357 0.07748 0.08049 0.05074 0.04616 0.06611 0.08013 0.08374 0.04455 0.05386 0.09658 0.03205 0.10190 0.01350 0.03540 0.01343 0.06879 0.06046 0.06794 0.04924 0.01358 0.01219 0.03662 0.06019 0.09256 0.10430 0.10664 0.04637 0.07184 0.01217 0.09367 0.03747 0.01835 0.10133 0.07246 0.07420 0.05209 0.10508 0.04569 0.05674 0.02669 0.10282 0.02817 0.30000 0.74517 0.45372
1 h-m-p 0.0000 0.0001 1094.8336 ++ 1600.148340 m 0.0001 53 | 1/48
2 h-m-p 0.0000 0.0000 1318.3553 ++ 1594.262962 m 0.0000 104 | 2/48
3 h-m-p 0.0000 0.0000 4967.5022 ++ 1594.205376 m 0.0000 155 | 3/48
4 h-m-p 0.0000 0.0000 262287.8861 ++ 1594.049322 m 0.0000 206 | 4/48
5 h-m-p 0.0000 0.0000 6149.6856 ++ 1537.955719 m 0.0000 257 | 5/48
6 h-m-p 0.0000 0.0000 3200.6850 ++ 1532.342948 m 0.0000 308 | 6/48
7 h-m-p 0.0000 0.0000 2697.9028 ++ 1522.190544 m 0.0000 359 | 7/48
8 h-m-p 0.0000 0.0000 56445.4080 ++ 1501.928298 m 0.0000 410 | 8/48
9 h-m-p 0.0000 0.0000 11824.8762 ++ 1499.701856 m 0.0000 461 | 9/48
10 h-m-p 0.0000 0.0000 1980.2617 ++ 1499.291265 m 0.0000 512 | 10/48
11 h-m-p 0.0000 0.0000 2172.5315 ++ 1485.132408 m 0.0000 563 | 11/48
12 h-m-p 0.0000 0.0000 2578.1526 ++ 1480.359198 m 0.0000 614 | 12/48
13 h-m-p 0.0000 0.0000 1853.5467 ++ 1465.326969 m 0.0000 665 | 13/48
14 h-m-p 0.0000 0.0000 4978.6740 ++ 1456.887966 m 0.0000 716 | 14/48
15 h-m-p 0.0000 0.0000 1250270.2173 ++ 1454.901505 m 0.0000 767 | 15/48
16 h-m-p 0.0000 0.0000 1980.0323 ++ 1454.866378 m 0.0000 818 | 16/48
17 h-m-p 0.0000 0.0000 5119.8812 ++ 1449.560795 m 0.0000 869 | 17/48
18 h-m-p 0.0000 0.0000 4996.2853 ++ 1447.641421 m 0.0000 920 | 18/48
19 h-m-p 0.0000 0.0000 2274.5158 ++ 1444.385233 m 0.0000 971 | 19/48
20 h-m-p 0.0000 0.0000 4422.8325 ++ 1442.649573 m 0.0000 1022 | 20/48
21 h-m-p 0.0000 0.0000 1436.1180 ++ 1440.056933 m 0.0000 1073 | 21/48
22 h-m-p 0.0000 0.0000 4016.9320 ++ 1437.845645 m 0.0000 1124 | 22/48
23 h-m-p 0.0000 0.0000 1309.9240 ++ 1432.929854 m 0.0000 1175 | 23/48
24 h-m-p 0.0000 0.0000 1151.0463 ++ 1432.658284 m 0.0000 1226 | 24/48
25 h-m-p 0.0000 0.0000 1249.5267 ++ 1432.612390 m 0.0000 1277 | 25/48
26 h-m-p 0.0000 0.0000 200.0022 ++ 1432.381012 m 0.0000 1328 | 26/48
27 h-m-p 0.0000 0.0011 139.4267 +++YYYYC 1426.808852 4 0.0006 1386 | 25/48
28 h-m-p 0.0001 0.0003 315.3694 +YCCC 1424.522438 3 0.0002 1443 | 25/48
29 h-m-p 0.0000 0.0001 361.9580 ++ 1420.959983 m 0.0001 1494 | 26/48
30 h-m-p 0.0001 0.0005 364.7126 +YYCYYCCC 1411.794676 7 0.0004 1556 | 26/48
31 h-m-p 0.0001 0.0004 209.4566 ++ 1408.139121 m 0.0004 1607 | 26/48
32 h-m-p 0.0000 0.0000 52.3835
h-m-p: 0.00000000e+00 0.00000000e+00 5.23834795e+01 1408.139121
.. | 26/48
33 h-m-p 0.0000 0.0002 1423.2766 +CCCC 1403.597482 3 0.0000 1713 | 26/48
34 h-m-p 0.0000 0.0002 383.6911 +CYYCYCCC 1387.418340 7 0.0002 1777 | 25/48
35 h-m-p 0.0000 0.0000 4293.0715 +YYYCCC 1379.527895 5 0.0000 1836 | 25/48
36 h-m-p 0.0000 0.0001 1245.1792 ++ 1373.235083 m 0.0001 1887 | 26/48
37 h-m-p 0.0001 0.0006 305.3399 +CYYCYCCC 1348.800368 7 0.0006 1950 | 25/48
38 h-m-p 0.0000 0.0000 2364.5713 ++ 1344.574793 m 0.0000 2001 | 26/48
39 h-m-p 0.0000 0.0001 3206.0466 +CYCCC 1328.033749 4 0.0001 2060 | 26/48
40 h-m-p 0.0000 0.0001 1550.2929 YCCCCC 1321.665669 5 0.0000 2120 | 26/48
41 h-m-p 0.0001 0.0003 225.3600 +YYYCCC 1318.459609 5 0.0002 2179 | 26/48
42 h-m-p 0.0001 0.0005 244.0184 YCYC 1316.154943 3 0.0002 2234 | 26/48
43 h-m-p 0.0001 0.0006 238.1601 +YCCCC 1312.880436 4 0.0003 2293 | 26/48
44 h-m-p 0.0003 0.0016 186.8140 YCCCC 1308.234935 4 0.0008 2351 | 26/48
45 h-m-p 0.0001 0.0006 242.4387 +YYCCC 1305.783926 4 0.0004 2409 | 26/48
46 h-m-p 0.0004 0.0024 213.0447 CCCCC 1302.366562 4 0.0007 2468 | 26/48
47 h-m-p 0.0005 0.0025 139.8284 CCC 1300.813341 2 0.0006 2523 | 26/48
48 h-m-p 0.0004 0.0018 125.1977 CCCCC 1299.929275 4 0.0005 2582 | 26/48
49 h-m-p 0.0012 0.0061 25.2040 YCC 1299.809853 2 0.0005 2636 | 26/48
50 h-m-p 0.0014 0.0140 9.4717 YC 1299.785030 1 0.0006 2688 | 26/48
51 h-m-p 0.0015 0.0293 3.5888 YC 1299.774136 1 0.0008 2740 | 26/48
52 h-m-p 0.0014 0.0860 2.0495 +CCC 1299.664766 2 0.0048 2796 | 26/48
53 h-m-p 0.0011 0.0309 9.2308 +YC 1296.972332 1 0.0107 2849 | 26/48
54 h-m-p 0.0006 0.0029 146.8608 +YYCCC 1289.711340 4 0.0019 2907 | 25/48
55 h-m-p 0.0001 0.0005 364.6169 CCCC 1289.218285 3 0.0001 2964 | 25/48
56 h-m-p 0.0003 0.0020 120.9316 YCCC 1287.283122 3 0.0006 3020 | 25/48
57 h-m-p 0.0007 0.0034 35.3222 YYC 1286.976877 2 0.0005 3073 | 25/48
58 h-m-p 0.0089 0.0521 2.1205 YC 1286.969388 1 0.0015 3125 | 25/48
59 h-m-p 0.0044 0.4150 0.7149 ++++ 1283.097506 m 0.4150 3178 | 26/48
60 h-m-p 0.3682 1.8412 0.4535 +YYYYCC 1278.830592 5 1.3984 3259 | 25/48
61 h-m-p 0.0021 0.0107 23.9072 --YC 1278.824497 1 0.0001 3335 | 25/48
62 h-m-p 0.0101 0.4813 0.1452 +++ 1278.296138 m 0.4813 3387 | 26/48
63 h-m-p 0.1749 3.1246 0.3995 +CCCC 1277.284361 3 0.8632 3468 | 26/48
64 h-m-p 0.4353 2.1763 0.0717 CYCCC 1277.100935 4 0.7626 3548 | 25/48
65 h-m-p 0.0003 0.0015 68.7688 YC 1277.094697 1 0.0001 3622 | 25/48
66 h-m-p 0.0878 3.9744 0.1171 ++YCCC 1276.792725 3 2.5180 3680 | 25/48
67 h-m-p 1.6000 8.0000 0.0769 CCC 1276.668031 2 1.7564 3758 | 25/48
68 h-m-p 0.6242 3.1208 0.0671 YC 1276.632085 1 1.4505 3833 | 25/48
69 h-m-p 0.6961 3.4807 0.0108 YC 1276.621246 1 1.4814 3908 | 25/48
70 h-m-p 1.6000 8.0000 0.0043 CC 1276.617430 1 2.0160 3984 | 25/48
71 h-m-p 1.6000 8.0000 0.0013 CC 1276.616012 1 1.8974 4060 | 25/48
72 h-m-p 1.1180 5.5898 0.0007 YC 1276.615491 1 2.2019 4135 | 25/48
73 h-m-p 0.4124 2.0618 0.0004 ++ 1276.615096 m 2.0618 4209 | 26/48
74 h-m-p 0.1718 8.0000 0.0045 Y 1276.615076 0 0.1282 4283 | 25/48
75 h-m-p 0.0009 0.1592 0.6151 Y 1276.615075 0 0.0005 4356 | 25/48
76 h-m-p 0.0401 0.2005 0.0058 ++ 1276.615009 m 0.2005 4430 | 26/48
77 h-m-p 0.2751 8.0000 0.0042 C 1276.614964 0 0.3354 4504 | 26/48
78 h-m-p 0.3671 8.0000 0.0039 Y 1276.614918 0 0.6637 4577 | 26/48
79 h-m-p 1.6000 8.0000 0.0003 C 1276.614916 0 1.9265 4650 | 26/48
80 h-m-p 1.6000 8.0000 0.0001 Y 1276.614916 0 2.6102 4723 | 26/48
81 h-m-p 1.6000 8.0000 0.0001 C 1276.614916 0 2.1199 4796 | 26/48
82 h-m-p 1.6000 8.0000 0.0000 C 1276.614916 0 1.6000 4869 | 26/48
83 h-m-p 1.6000 8.0000 0.0000 --Y 1276.614916 0 0.0250 4944 | 26/48
84 h-m-p 0.0160 8.0000 0.0000 -Y 1276.614916 0 0.0010 5018
Out..
lnL = -1276.614916
5019 lfun, 15057 eigenQcodon, 451710 P(t)
end of tree file.
Time used: 2:37
Model 2: PositiveSelection
TREE # 1
(12, 3, 7, 15, (((((11, 8), (4, 23, 29)), 1), (17, 28)), 24), ((13, 16), (((18, 21, 27, 20), 22, 30, 2, ((6, 9), 19), 5, 14, 25), (26, 10)))); MP score: 128
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
39
0.047448 0.075721 0.080484 0.076749 0.065415 0.063592 0.038806 0.020178 0.027665 0.094134 0.068797 0.025643 0.065076 0.088303 0.109040 0.072425 0.076758 0.090757 0.019872 0.066561 0.054646 0.093218 0.107743 0.101649 0.022862 0.055777 0.104161 0.085576 0.065236 0.080839 0.010172 0.075352 0.089468 0.069391 0.092301 0.037234 0.051338 0.064282 0.090893 0.024335 0.037414 0.060201 0.076800 0.038895 0.079696 3.824837 1.050482 0.386692 0.145649 1.405632
ntime & nrate & np: 45 3 50
Bounds (np=50):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 3.893673
np = 50
lnL0 = -1527.530912
Iterating by ming2
Initial: fx= 1527.530912
x= 0.04745 0.07572 0.08048 0.07675 0.06541 0.06359 0.03881 0.02018 0.02766 0.09413 0.06880 0.02564 0.06508 0.08830 0.10904 0.07243 0.07676 0.09076 0.01987 0.06656 0.05465 0.09322 0.10774 0.10165 0.02286 0.05578 0.10416 0.08558 0.06524 0.08084 0.01017 0.07535 0.08947 0.06939 0.09230 0.03723 0.05134 0.06428 0.09089 0.02434 0.03741 0.06020 0.07680 0.03890 0.07970 3.82484 1.05048 0.38669 0.14565 1.40563
1 h-m-p 0.0000 0.0001 745.5161 ++ 1476.430800 m 0.0001 55 | 1/50
2 h-m-p 0.0000 0.0001 760.7876 ++ 1449.876190 m 0.0001 108 | 2/50
3 h-m-p 0.0000 0.0000 15149.9154 ++ 1446.806117 m 0.0000 161 | 3/50
4 h-m-p 0.0000 0.0001 986.3121 ++ 1409.124385 m 0.0001 214 | 4/50
5 h-m-p 0.0001 0.0003 300.3061 ++ 1394.932785 m 0.0003 267 | 5/50
6 h-m-p 0.0000 0.0000 392.7228 ++ 1393.861446 m 0.0000 320 | 6/50
7 h-m-p 0.0000 0.0002 216.7743 ++ 1383.980932 m 0.0002 373 | 7/50
8 h-m-p 0.0000 0.0000 609.3729 ++ 1375.373282 m 0.0000 426 | 8/50
9 h-m-p 0.0000 0.0000 7141.8200 ++ 1370.368302 m 0.0000 479 | 9/50
10 h-m-p 0.0000 0.0000 2957.0684 ++ 1368.737181 m 0.0000 532 | 10/50
11 h-m-p 0.0000 0.0000 305.8154 ++ 1366.547889 m 0.0000 585 | 11/50
12 h-m-p 0.0000 0.0000 699.7992 ++ 1364.707940 m 0.0000 638 | 12/50
13 h-m-p 0.0000 0.0000 12547.8552 ++ 1356.051489 m 0.0000 691 | 13/50
14 h-m-p 0.0000 0.0000 118960.3886 ++ 1355.998983 m 0.0000 744 | 14/50
15 h-m-p 0.0000 0.0000 1794.1194 ++ 1354.298686 m 0.0000 797 | 15/50
16 h-m-p 0.0000 0.0000 11426.5137 ++ 1350.336173 m 0.0000 850 | 16/50
17 h-m-p 0.0000 0.0000 22117.2446 ++ 1349.487504 m 0.0000 903 | 17/50
18 h-m-p 0.0000 0.0000 2997.8508 ++ 1349.364868 m 0.0000 956 | 18/50
19 h-m-p 0.0000 0.0000 5908.4918 ++ 1346.564094 m 0.0000 1009 | 19/50
20 h-m-p 0.0000 0.0000 3368.8820 ++ 1345.130169 m 0.0000 1062 | 20/50
21 h-m-p 0.0000 0.0000 2069.8757 ++ 1342.000543 m 0.0000 1115 | 21/50
22 h-m-p 0.0000 0.0000 1465.4903 ++ 1338.717773 m 0.0000 1168 | 22/50
23 h-m-p 0.0000 0.0000 1900.4096 ++ 1337.173066 m 0.0000 1221 | 23/50
24 h-m-p 0.0000 0.0000 1177.6289 ++ 1335.902642 m 0.0000 1274 | 24/50
25 h-m-p 0.0000 0.0000 803.1427 ++ 1334.780921 m 0.0000 1327 | 25/50
26 h-m-p 0.0000 0.0000 205.3021 ++ 1334.628183 m 0.0000 1380 | 26/50
27 h-m-p 0.0000 0.0009 155.9595 +++YCYCYC 1326.577249 5 0.0008 1444 | 26/50
28 h-m-p 0.0003 0.0014 51.8317 +YYCYC 1325.155697 4 0.0010 1503 | 26/50
29 h-m-p 0.0002 0.0009 142.3939 +YYYYYYC 1322.152171 6 0.0007 1563 | 25/50
30 h-m-p 0.0000 0.0000 2876.5388 ++ 1321.175320 m 0.0000 1616 | 25/50
31 h-m-p 0.0000 0.0000 119.7515
h-m-p: 2.00490935e-21 1.00245468e-20 1.19751513e+02 1321.175320
.. | 25/50
32 h-m-p 0.0000 0.0009 538.2309 ++CYCCC 1312.737550 4 0.0001 1728 | 25/50
33 h-m-p 0.0001 0.0006 279.5039 +YCYYCC 1291.586228 5 0.0006 1790 | 25/50
34 h-m-p 0.0000 0.0001 287.1998 YCYCCC 1290.354220 5 0.0001 1851 | 25/50
35 h-m-p 0.0002 0.0012 47.1309 CCC 1290.036026 2 0.0003 1908 | 25/50
36 h-m-p 0.0002 0.0009 69.1892 CCC 1289.803826 2 0.0002 1965 | 25/50
37 h-m-p 0.0002 0.0012 66.2201 CCCC 1289.525330 3 0.0003 2024 | 25/50
38 h-m-p 0.0001 0.0006 91.1042 CCY 1289.416655 2 0.0001 2081 | 25/50
39 h-m-p 0.0001 0.0007 65.0430 ++ 1288.759495 m 0.0007 2134 | 26/50
40 h-m-p 0.0003 0.0022 136.7815 +YYCCC 1287.048738 4 0.0012 2194 | 26/50
41 h-m-p 0.0002 0.0008 769.5618 +YYCCC 1283.124359 4 0.0005 2254 | 26/50
42 h-m-p 0.0000 0.0002 1040.0852 ++ 1280.882726 m 0.0002 2307 | 27/50
43 h-m-p 0.0000 0.0002 859.2125 +YYCYC 1279.431630 4 0.0002 2366 | 27/50
44 h-m-p 0.0002 0.0009 217.0001 CCCC 1278.977607 3 0.0003 2425 | 27/50
45 h-m-p 0.0007 0.0036 61.6663 YCCC 1278.786208 3 0.0004 2483 | 26/50
46 h-m-p 0.0002 0.0018 159.9682 CYCCC 1278.619196 4 0.0000 2543 | 26/50
47 h-m-p 0.0007 0.0220 7.6804 CC 1278.596357 1 0.0009 2598 | 26/50
48 h-m-p 0.0036 0.1014 2.0082 YC 1278.589833 1 0.0017 2652 | 26/50
49 h-m-p 0.0021 0.1322 1.5691 +CYC 1278.542318 2 0.0077 2709 | 26/50
50 h-m-p 0.0007 0.0434 16.3622 ++YYC 1277.843672 2 0.0090 2766 | 26/50
51 h-m-p 0.0018 0.0099 82.1535 YCCC 1277.468609 3 0.0010 2824 | 26/50
52 h-m-p 0.0040 0.0200 5.5596 YC 1277.460929 1 0.0006 2878 | 26/50
53 h-m-p 0.0056 0.7728 0.6014 YC 1277.448508 1 0.0090 2932 | 26/50
54 h-m-p 0.0008 0.1003 6.6009 ++CCC 1277.109683 2 0.0164 3015 | 26/50
55 h-m-p 0.0011 0.0074 96.2431 CCC 1276.726351 2 0.0013 3072 | 26/50
56 h-m-p 0.0259 0.1294 3.3234 --CC 1276.723785 1 0.0006 3129 | 26/50
57 h-m-p 0.0160 8.0000 0.1546 +++YC 1276.647900 1 0.7125 3186 | 26/50
58 h-m-p 1.6000 8.0000 0.0482 YC 1276.624561 1 0.8725 3264 | 26/50
59 h-m-p 1.2963 8.0000 0.0325 CC 1276.621713 1 1.1761 3343 | 26/50
60 h-m-p 1.6000 8.0000 0.0212 CC 1276.619740 1 1.3870 3422 | 26/50
61 h-m-p 1.6000 8.0000 0.0062 C 1276.618808 0 1.5470 3499 | 26/50
62 h-m-p 1.6000 8.0000 0.0025 C 1276.618487 0 1.9615 3576 | 26/50
63 h-m-p 1.6000 8.0000 0.0009 +YC 1276.617400 1 5.2831 3655 | 26/50
64 h-m-p 0.4234 2.1172 0.0038 ++ 1276.615394 m 2.1172 3732 | 27/50
65 h-m-p 1.6000 8.0000 0.0028 YC 1276.615260 1 0.2762 3810 | 27/50
66 h-m-p 0.0663 8.0000 0.0118 YC 1276.614947 1 0.1570 3887 | 27/50
67 h-m-p 1.6000 8.0000 0.0008 Y 1276.614919 0 1.1302 3963 | 27/50
68 h-m-p 1.6000 8.0000 0.0004 C 1276.614916 0 1.3628 4039 | 27/50
69 h-m-p 1.6000 8.0000 0.0000 Y 1276.614916 0 0.9632 4115 | 27/50
70 h-m-p 1.6000 8.0000 0.0000 Y 1276.614916 0 0.7997 4191 | 27/50
71 h-m-p 1.6000 8.0000 0.0000 ----------------.. | 27/50
72 h-m-p 0.0160 8.0000 0.0012 ---Y 1276.614916 0 0.0001 4360 | 27/50
73 h-m-p 0.0160 8.0000 0.0005 -------------.. | 27/50
74 h-m-p 0.0160 8.0000 0.0004 ------------- | 27/50
75 h-m-p 0.0160 8.0000 0.0004 -------------
Out..
lnL = -1276.614916
4622 lfun, 18488 eigenQcodon, 623970 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -1286.242540 S = -1215.293210 -95.495667
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 103 patterns 6:13
did 20 / 103 patterns 6:13
did 30 / 103 patterns 6:13
did 40 / 103 patterns 6:13
did 50 / 103 patterns 6:13
did 60 / 103 patterns 6:13
did 70 / 103 patterns 6:13
did 80 / 103 patterns 6:13
did 90 / 103 patterns 6:13
did 100 / 103 patterns 6:13
did 103 / 103 patterns 6:13end of tree file.
Time used: 6:13
Model 7: beta
TREE # 1
(12, 3, 7, 15, (((((11, 8), (4, 23, 29)), 1), (17, 28)), 24), ((13, 16), (((18, 21, 27, 20), 22, 30, 2, ((6, 9), 19), 5, 14, 25), (26, 10)))); MP score: 128
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
39
0.032367 0.087466 0.083815 0.061920 0.099553 0.037109 0.078867 0.065619 0.061501 0.100581 0.072984 0.030856 0.084394 0.109029 0.064665 0.044721 0.059316 0.041840 0.065709 0.060697 0.010377 0.027955 0.037416 0.093084 0.107030 0.083022 0.048954 0.030859 0.035289 0.093324 0.100084 0.019414 0.057506 0.032424 0.025424 0.033592 0.065422 0.071463 0.072448 0.040472 0.106158 0.019042 0.020400 0.025347 0.035846 3.824836 1.116413 1.723135
ntime & nrate & np: 45 1 48
Bounds (np=48):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 5.068824
np = 48
lnL0 = -1547.632523
Iterating by ming2
Initial: fx= 1547.632523
x= 0.03237 0.08747 0.08382 0.06192 0.09955 0.03711 0.07887 0.06562 0.06150 0.10058 0.07298 0.03086 0.08439 0.10903 0.06466 0.04472 0.05932 0.04184 0.06571 0.06070 0.01038 0.02795 0.03742 0.09308 0.10703 0.08302 0.04895 0.03086 0.03529 0.09332 0.10008 0.01941 0.05751 0.03242 0.02542 0.03359 0.06542 0.07146 0.07245 0.04047 0.10616 0.01904 0.02040 0.02535 0.03585 3.82484 1.11641 1.72313
1 h-m-p 0.0000 0.0001 934.1055 ++ 1486.075958 m 0.0001 101 | 1/48
2 h-m-p 0.0000 0.0001 1005.7913 ++ 1430.142075 m 0.0001 200 | 2/48
3 h-m-p 0.0000 0.0000 57640.4741 ++ 1424.254783 m 0.0000 298 | 3/48
4 h-m-p 0.0000 0.0000 40617.8939 ++ 1417.391248 m 0.0000 395 | 4/48
5 h-m-p 0.0000 0.0000 22466.4112 ++ 1412.302772 m 0.0000 491 | 5/48
6 h-m-p 0.0000 0.0000 8720.1698 ++ 1404.215083 m 0.0000 586 | 6/48
7 h-m-p 0.0000 0.0000 5346.5061 ++ 1395.473652 m 0.0000 680 | 7/48
8 h-m-p 0.0000 0.0000 56362.6188 ++ 1384.582821 m 0.0000 773 | 8/48
9 h-m-p 0.0000 0.0000 13657.2470 ++ 1350.622033 m 0.0000 865 | 9/48
10 h-m-p 0.0000 0.0000 2381.7750 ++ 1349.482854 m 0.0000 956 | 10/48
11 h-m-p 0.0000 0.0000 2034.4522 ++ 1346.944511 m 0.0000 1046 | 11/48
12 h-m-p 0.0000 0.0000 1925.1668 ++ 1341.040913 m 0.0000 1135 | 12/48
13 h-m-p 0.0000 0.0000 1444.0686 ++ 1340.572693 m 0.0000 1223 | 13/48
14 h-m-p 0.0000 0.0000 4012.3414 ++ 1339.300697 m 0.0000 1310 | 14/48
15 h-m-p 0.0000 0.0000 3181.5367 ++ 1331.572526 m 0.0000 1396 | 15/48
16 h-m-p 0.0000 0.0000 27830.7774 ++ 1328.280850 m 0.0000 1481 | 16/48
17 h-m-p 0.0000 0.0000 4434.7778 ++ 1325.630104 m 0.0000 1565 | 17/48
18 h-m-p 0.0000 0.0000 5114.3992 ++ 1315.880616 m 0.0000 1648 | 18/48
19 h-m-p 0.0000 0.0000 2508.0436 ++ 1315.186606 m 0.0000 1730 | 19/48
20 h-m-p 0.0000 0.0000 1801.4450 ++ 1312.425964 m 0.0000 1811 | 20/48
21 h-m-p 0.0000 0.0000 1960.5239 ++ 1310.494219 m 0.0000 1891 | 21/48
22 h-m-p 0.0000 0.0000 2097.3797 ++ 1308.313651 m 0.0000 1970 | 22/48
23 h-m-p 0.0000 0.0000 1844.3980 ++ 1306.653009 m 0.0000 2048 | 23/48
24 h-m-p 0.0000 0.0000 1523.9263 ++ 1305.313658 m 0.0000 2125 | 24/48
25 h-m-p 0.0000 0.0000 671.1905 ++ 1304.540175 m 0.0000 2201 | 25/48
26 h-m-p 0.0000 0.0000 596.7218 ++ 1303.581988 m 0.0000 2276 | 26/48
27 h-m-p 0.0001 0.0025 49.9306 ++YYYYYC 1302.324980 5 0.0009 2357 | 25/48
28 h-m-p 0.0009 0.0068 52.9770 CYCCC 1302.170769 4 0.0001 2438 | 25/48
29 h-m-p 0.0001 0.0035 72.3566 ++CYCCC 1296.631776 4 0.0029 2522 | 25/48
30 h-m-p 0.0001 0.0005 234.0717 +YYYYCC 1294.147099 5 0.0004 2603 | 25/48
31 h-m-p 0.0002 0.0012 294.2203 YCYCCC 1290.410584 5 0.0006 2685 | 25/48
32 h-m-p 0.0008 0.0038 102.5045 +YYCCC 1286.153980 4 0.0027 2766 | 25/48
33 h-m-p 0.0030 0.0150 2.4361 ++ 1285.633245 m 0.0150 2840 | 26/48
34 h-m-p 0.0200 0.1001 1.7237 YCYCCC 1284.690669 5 0.0427 2922 | 25/48
35 h-m-p 0.0006 0.0032 38.4423 -CCC 1284.677986 2 0.0001 3000 | 25/48
36 h-m-p 0.0021 0.2799 1.0551 ++YCCC 1283.842581 3 0.0675 3081 | 25/48
37 h-m-p 0.0407 0.2033 0.5328 YCCCC 1282.625875 4 0.0830 3162 | 25/48
38 h-m-p 0.0254 0.2517 1.7437 +YCCC 1280.242622 3 0.1492 3242 | 25/48
39 h-m-p 0.0127 0.0633 2.5424 +YCC 1279.137781 2 0.0545 3320 | 25/48
40 h-m-p 0.0062 0.0311 0.3975 ++ 1278.853695 m 0.0311 3394 | 26/48
41 h-m-p 0.0310 0.5145 0.3975 +CYCCC 1278.379885 4 0.1830 3476 | 26/48
42 h-m-p 0.0435 0.2175 1.5460 YCCCC 1277.520016 4 0.1070 3556 | 25/48
43 h-m-p 0.0001 0.0005 380.0652 CYC 1277.449841 2 0.0001 3632 | 25/48
44 h-m-p 0.0355 1.0925 0.8012 ++YCC 1276.972159 2 0.4104 3711 | 25/48
45 h-m-p 0.7021 3.5105 0.0834 YC 1276.847676 1 0.3175 3786 | 25/48
46 h-m-p 0.1177 1.4024 0.2250 YCC 1276.790633 2 0.1953 3863 | 25/48
47 h-m-p 0.1788 4.3824 0.2457 CCC 1276.765151 2 0.2697 3941 | 25/48
48 h-m-p 0.1495 0.7476 0.1595 +YC 1276.732397 1 0.4738 4017 | 25/48
49 h-m-p 0.1132 0.5659 0.0270 +CC 1276.725649 1 0.4044 4094 | 25/48
50 h-m-p 0.4742 8.0000 0.0230 CC 1276.716250 1 0.7286 4170 | 25/48
51 h-m-p 0.1909 0.9544 0.0172 ++ 1276.710239 m 0.9544 4244 | 26/48
52 h-m-p 1.6000 8.0000 0.0062 CC 1276.703488 1 1.2910 4320 | 26/48
53 h-m-p 0.2584 2.2869 0.0311 YC 1276.701496 1 0.1239 4394 | 25/48
54 h-m-p 0.0025 0.0440 1.5434 Y 1276.701487 0 0.0003 4467 | 25/48
55 h-m-p 0.0882 8.0000 0.0055 ++CC 1276.695136 1 1.7733 4545 | 25/48
56 h-m-p 1.6000 8.0000 0.0026 YC 1276.694306 1 1.0415 4620 | 25/48
57 h-m-p 0.5273 8.0000 0.0050 Y 1276.694264 0 0.9000 4694 | 25/48
58 h-m-p 1.6000 8.0000 0.0019 Y 1276.694250 0 1.2299 4768 | 25/48
59 h-m-p 1.6000 8.0000 0.0004 C 1276.694246 0 1.8440 4842 | 25/48
60 h-m-p 1.6000 8.0000 0.0001 C 1276.694245 0 2.1104 4916 | 25/48
61 h-m-p 1.6000 8.0000 0.0001 C 1276.694245 0 1.4467 4990 | 25/48
62 h-m-p 1.6000 8.0000 0.0000 C 1276.694245 0 2.1130 5064 | 25/48
63 h-m-p 0.8014 8.0000 0.0000 Y 1276.694245 0 1.5481 5138 | 25/48
64 h-m-p 1.6000 8.0000 0.0000 C 1276.694245 0 1.3395 5212 | 25/48
65 h-m-p 1.6000 8.0000 0.0000 C 1276.694245 0 1.6000 5286 | 25/48
66 h-m-p 1.6000 8.0000 0.0000 ----------------.. | 25/48
67 h-m-p 0.0160 8.0000 0.0012 -------------
Out..
lnL = -1276.694245
5460 lfun, 60060 eigenQcodon, 2457000 P(t)
end of tree file.
Time used: 20:22
Model 8: beta&w>1
TREE # 1
(12, 3, 7, 15, (((((11, 8), (4, 23, 29)), 1), (17, 28)), 24), ((13, 16), (((18, 21, 27, 20), 22, 30, 2, ((6, 9), 19), 5, 14, 25), (26, 10)))); MP score: 128
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
39
0.029309 0.030592 0.070496 0.107326 0.021899 0.059433 0.095877 0.075472 0.107259 0.099012 0.084714 0.052145 0.037207 0.044628 0.032491 0.044414 0.079687 0.047364 0.095361 0.076385 0.066035 0.081976 0.043410 0.075789 0.015476 0.025234 0.031014 0.038994 0.010320 0.099394 0.095222 0.016616 0.070269 0.010500 0.068100 0.036927 0.049286 0.086194 0.063984 0.059244 0.053464 0.092727 0.077569 0.024482 0.053316 3.842114 0.900000 0.958559 1.937734 1.300000
ntime & nrate & np: 45 2 50
Bounds (np=50):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 4.832134
np = 50
lnL0 = -1555.675543
Iterating by ming2
Initial: fx= 1555.675543
x= 0.02931 0.03059 0.07050 0.10733 0.02190 0.05943 0.09588 0.07547 0.10726 0.09901 0.08471 0.05215 0.03721 0.04463 0.03249 0.04441 0.07969 0.04736 0.09536 0.07639 0.06603 0.08198 0.04341 0.07579 0.01548 0.02523 0.03101 0.03899 0.01032 0.09939 0.09522 0.01662 0.07027 0.01050 0.06810 0.03693 0.04929 0.08619 0.06398 0.05924 0.05346 0.09273 0.07757 0.02448 0.05332 3.84211 0.90000 0.95856 1.93773 1.30000
1 h-m-p 0.0000 0.0001 1411.2202 ++ 1467.160900 m 0.0001 105 | 1/50
2 h-m-p 0.0000 0.0001 649.2721 ++ 1430.782492 m 0.0001 208 | 2/50
3 h-m-p 0.0000 0.0000 45086.1720 ++ 1410.430725 m 0.0000 310 | 3/50
4 h-m-p 0.0000 0.0000 22554.8306 ++ 1407.765752 m 0.0000 411 | 4/50
5 h-m-p 0.0000 0.0000 9237.0929 ++ 1406.872432 m 0.0000 511 | 5/50
6 h-m-p 0.0000 0.0000 453536.4292 ++ 1389.236236 m 0.0000 610 | 6/50
7 h-m-p 0.0000 0.0000 1645.1587 ++ 1389.044074 m 0.0000 708 | 7/50
8 h-m-p 0.0000 0.0000 2484.9737 ++ 1376.057506 m 0.0000 805 | 8/50
9 h-m-p 0.0000 0.0000 3339.8010 ++ 1373.179313 m 0.0000 901 | 9/50
10 h-m-p 0.0000 0.0000 11013.7405 ++ 1371.396437 m 0.0000 996 | 10/50
11 h-m-p 0.0000 0.0000 11432.0763 ++ 1365.393916 m 0.0000 1090 | 11/50
12 h-m-p 0.0000 0.0000 7047.9542 ++ 1336.974811 m 0.0000 1183 | 12/50
13 h-m-p 0.0000 0.0000 2658.7586 ++ 1333.035533 m 0.0000 1275 | 13/50
14 h-m-p 0.0000 0.0000 2230.9243 ++ 1327.609728 m 0.0000 1366 | 14/50
15 h-m-p 0.0000 0.0000 1075.6474 ++ 1321.176388 m 0.0000 1456 | 15/50
16 h-m-p 0.0000 0.0000 2449.7414 ++ 1319.846184 m 0.0000 1545 | 16/50
17 h-m-p 0.0000 0.0000 4724.7261 ++ 1317.118780 m 0.0000 1633 | 17/50
18 h-m-p 0.0000 0.0000 5170.5655 ++ 1315.619252 m 0.0000 1720 | 18/50
19 h-m-p 0.0000 0.0000 3034.0900 ++ 1311.553391 m 0.0000 1806 | 19/50
20 h-m-p 0.0000 0.0000 2932.4242 ++ 1309.901258 m 0.0000 1891 | 20/50
21 h-m-p 0.0000 0.0000 1655.6054 ++ 1309.602268 m 0.0000 1975 | 21/50
22 h-m-p 0.0000 0.0000 1336.0175 ++ 1306.488939 m 0.0000 2058 | 22/50
23 h-m-p 0.0000 0.0000 1530.5600 ++ 1305.989832 m 0.0000 2140 | 23/50
24 h-m-p 0.0000 0.0000 1713.7201 ++ 1304.953199 m 0.0000 2221 | 24/50
25 h-m-p 0.0000 0.0000 588.0300 ++ 1303.485001 m 0.0000 2301 | 25/50
26 h-m-p 0.0000 0.0000 536.2139 ++ 1302.523129 m 0.0000 2380 | 26/50
27 h-m-p 0.0001 0.0032 44.0755 ++YYCCC 1300.644330 4 0.0012 2466 | 25/50
28 h-m-p 0.0003 0.0042 157.1176 CYYC 1300.300735 3 0.0000 2548 | 25/50
29 h-m-p 0.0001 0.0070 58.3732 ++CCYCCC 1290.233901 5 0.0050 2638 | 25/50
30 h-m-p 0.0001 0.0003 380.1413 YCYCCC 1288.869300 5 0.0001 2724 | 25/50
31 h-m-p 0.0004 0.0018 77.4385 +YCCC 1287.430468 3 0.0011 2808 | 25/50
32 h-m-p 0.0002 0.0010 93.6846 +YYCC 1286.518126 3 0.0007 2891 | 25/50
33 h-m-p 0.0017 0.0116 39.6402 CCCCC 1285.230831 4 0.0031 2977 | 25/50
34 h-m-p 0.0072 0.0362 3.7864 YCCC 1284.715409 3 0.0136 3060 | 25/50
35 h-m-p 0.0050 0.0306 10.3765 YC 1283.996710 1 0.0083 3139 | 25/50
36 h-m-p 0.0027 0.0134 12.2702 YCCCC 1283.349165 4 0.0062 3224 | 25/50
37 h-m-p 0.0119 0.0601 6.4127 CCCC 1282.837084 3 0.0138 3308 | 25/50
38 h-m-p 0.0030 0.0151 5.9919 ++ 1282.330395 m 0.0151 3386 | 26/50
39 h-m-p 0.0238 0.1612 3.8125 CCC 1281.992786 2 0.0282 3468 | 26/50
40 h-m-p 0.0505 0.2527 2.1230 YCCCC 1281.437150 4 0.0951 3552 | 25/50
41 h-m-p 0.0002 0.0011 300.9207 CYC 1281.413356 2 0.0001 3632 | 25/50
42 h-m-p 0.0071 0.0799 2.7908 ++ 1280.920782 m 0.0799 3710 | 25/50
43 h-m-p -0.0000 -0.0000 3.2176
h-m-p: -4.56753212e-18 -2.28376606e-17 3.21755359e+00 1280.920782
.. | 25/50
44 h-m-p 0.0000 0.0009 139.6748 ++CYCC 1279.745706 3 0.0002 3870 | 25/50
45 h-m-p 0.0000 0.0000 139.3637 ++ 1279.507838 m 0.0000 3948 | 26/50
46 h-m-p 0.0000 0.0008 114.5167 +YCCC 1278.966757 3 0.0002 4032 | 26/50
47 h-m-p 0.0003 0.0019 61.7847 YCCC 1278.813353 3 0.0001 4114 | 26/50
48 h-m-p 0.0001 0.0006 73.3647 CCCC 1278.629231 3 0.0002 4197 | 26/50
49 h-m-p 0.0006 0.0037 19.9572 YC 1278.590664 1 0.0003 4275 | 26/50
50 h-m-p 0.0005 0.0070 9.9104 YC 1278.576314 1 0.0004 4353 | 26/50
51 h-m-p 0.0007 0.0151 5.3104 CC 1278.566601 1 0.0007 4432 | 26/50
52 h-m-p 0.0006 0.0315 6.3163 +YC 1278.543439 1 0.0015 4511 | 26/50
53 h-m-p 0.0005 0.0138 19.9157 CCC 1278.514978 2 0.0006 4592 | 26/50
54 h-m-p 0.0003 0.0081 34.8093 YC 1278.447216 1 0.0008 4670 | 26/50
55 h-m-p 0.0010 0.0185 26.3392 YC 1278.405422 1 0.0006 4748 | 26/50
56 h-m-p 0.0043 0.0254 3.8977 C 1278.391857 0 0.0011 4825 | 26/50
57 h-m-p 0.0015 0.0436 2.7313 +CCC 1278.245021 2 0.0080 4907 | 26/50
58 h-m-p 0.0007 0.0036 23.8342 YCYCCC 1277.903725 5 0.0016 4992 | 26/50
59 h-m-p 0.0006 0.0029 20.9179 YYC 1277.847071 2 0.0005 5071 | 26/50
60 h-m-p 0.0014 0.0088 6.6421 CC 1277.837212 1 0.0005 5150 | 26/50
61 h-m-p 0.0029 0.0623 1.1061 +CC 1277.782780 1 0.0115 5230 | 26/50
62 h-m-p 0.0006 0.0154 19.8180 ++YCCC 1277.019796 3 0.0074 5314 | 26/50
63 h-m-p 0.0003 0.0017 98.6939 CCCC 1276.726070 3 0.0006 5397 | 26/50
64 h-m-p 0.0009 0.0043 9.2968 YC 1276.712663 1 0.0005 5475 | 26/50
65 h-m-p 0.0041 0.1246 1.0447 CC 1276.696846 1 0.0053 5554 | 26/50
66 h-m-p 0.0008 0.0768 7.1880 ++YCC 1276.159882 2 0.0212 5636 | 25/50
67 h-m-p 0.0012 0.0058 70.3185 -C 1276.153449 0 0.0001 5714 | 25/50
68 h-m-p 0.0018 0.0184 2.8436 C 1276.151627 0 0.0005 5792 | 25/50
69 h-m-p 0.0160 8.0000 0.0917 +++YCC 1276.031491 2 0.8152 5876 | 25/50
70 h-m-p 0.4141 4.3338 0.1805 +YCCC 1275.997819 3 1.1117 5960 | 25/50
71 h-m-p 0.3903 1.9515 0.1286 +YC 1275.974012 1 1.7145 6040 | 25/50
72 h-m-p 0.0224 0.1122 0.2593 ++ 1275.970473 m 0.1122 6118 | 25/50
73 h-m-p 0.0000 0.0000 1.0977
h-m-p: 7.29768857e-20 3.64884428e-19 1.09772711e+00 1275.970473
.. | 25/50
74 h-m-p 0.0000 0.0019 7.7176 +YC 1275.967545 1 0.0001 6273 | 25/50
75 h-m-p 0.0000 0.0000 6.7969 ++ 1275.967468 m 0.0000 6351 | 26/50
76 h-m-p 0.0000 0.0049 14.8810 +CC 1275.966268 1 0.0001 6432 | 26/50
77 h-m-p 0.0002 0.0168 3.7811 CC 1275.965065 1 0.0003 6511 | 26/50
78 h-m-p 0.0005 0.0247 2.4648 YC 1275.964369 1 0.0004 6589 | 26/50
79 h-m-p 0.0003 0.0896 2.6277 YC 1275.963457 1 0.0006 6667 | 26/50
80 h-m-p 0.0008 0.0236 1.7876 YC 1275.963204 1 0.0003 6745 | 26/50
81 h-m-p 0.0001 0.0146 4.4089 C 1275.962977 0 0.0001 6822 | 26/50
82 h-m-p 0.0007 0.1046 0.9125 YC 1275.962899 1 0.0003 6900 | 26/50
83 h-m-p 0.0009 0.2190 0.3570 Y 1275.962873 0 0.0006 6977 | 26/50
84 h-m-p 0.0012 0.6032 0.1954 Y 1275.962858 0 0.0010 7054 | 26/50
85 h-m-p 0.0002 0.0375 1.1041 Y 1275.962848 0 0.0001 7131 | 26/50
86 h-m-p 0.0019 0.9603 0.4918 YC 1275.962737 1 0.0036 7209 | 26/50
87 h-m-p 0.0014 0.4037 1.2839 C 1275.962648 0 0.0011 7286 | 26/50
88 h-m-p 0.0013 0.3904 1.1736 C 1275.962578 0 0.0010 7363 | 26/50
89 h-m-p 0.0013 0.6204 0.9037 C 1275.962492 0 0.0017 7440 | 26/50
90 h-m-p 0.0016 0.8200 1.8281 ++CC 1275.960080 1 0.0244 7521 | 26/50
91 h-m-p 0.0007 0.0243 60.4972 +CCC 1275.948690 2 0.0034 7603 | 26/50
92 h-m-p 0.0051 0.0264 39.6815 YC 1275.947169 1 0.0007 7681 | 26/50
93 h-m-p 0.0216 0.2625 1.2978 --C 1275.947132 0 0.0005 7760 | 26/50
94 h-m-p 0.0059 2.9674 0.1734 Y 1275.947063 0 0.0095 7837 | 26/50
95 h-m-p 0.0026 1.3217 2.7065 ++C 1275.942219 0 0.0435 7916 | 26/50
96 h-m-p 0.0038 0.0538 31.3149 YC 1275.941488 1 0.0006 7994 | 26/50
97 h-m-p 0.3195 1.8421 0.0547 ---C 1275.941484 0 0.0018 8074 | 25/50
98 h-m-p 0.0160 8.0000 1.1923 ---C 1275.941440 0 0.0001 8154 | 25/50
99 h-m-p 0.0006 0.1849 0.1336 +++++ 1275.940152 m 0.1849 8235 | 26/50
100 h-m-p 0.3794 8.0000 0.0651 YC 1275.939219 1 0.8162 8314 | 26/50
101 h-m-p 1.6000 8.0000 0.0031 Y 1275.939178 0 1.0591 8391 | 26/50
102 h-m-p 1.5895 8.0000 0.0021 C 1275.939174 0 1.5895 8468 | 26/50
103 h-m-p 1.6000 8.0000 0.0018 C 1275.939173 0 1.4509 8545 | 26/50
104 h-m-p 1.6000 8.0000 0.0001 Y 1275.939173 0 1.2257 8622 | 26/50
105 h-m-p 1.6000 8.0000 0.0000 C 1275.939173 0 1.4522 8699 | 26/50
106 h-m-p 1.6000 8.0000 0.0000 -----------C 1275.939173 0 0.0000 8787
Out..
lnL = -1275.939173
8788 lfun, 105456 eigenQcodon, 4350060 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -1283.841799 S = -1215.481570 -72.729500
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 103 patterns 45:29
did 20 / 103 patterns 45:29
did 30 / 103 patterns 45:29
did 40 / 103 patterns 45:30
did 50 / 103 patterns 45:30
did 60 / 103 patterns 45:30
did 70 / 103 patterns 45:30
did 80 / 103 patterns 45:30
did 90 / 103 patterns 45:31
did 100 / 103 patterns 45:31
did 103 / 103 patterns 45:31end of tree file.
Time used: 45:31
The loglikelihoods for models M1, M2, M7 and M8 are -1276.614916 -1276.614916 -1276.694245 -1275.939173 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
TGEV_USA_Iowa143_2008_NSP3b_ASV64342_1_2008_03_06_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDRVIVQQHQVVSARTQNYYPEFSIAVLF
HLJ_HRB_2016_13_NA_AUG98144_1_2016_11_China_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTSHVNS------IVQQHHVVSANIKSFHLEFSIAVLF
TGEV_Mex_145_2008_NSP3b_ASV64360_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNYYPEFSIAVLF
TGEV_USA_Minnesota148_2013_NSP3b_ASV64386_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHHVVSARTQNYYPEFSIAVLF
UNKNOWN_HQ012372_NA_ADL71500_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSFHLEFSIAVLF
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSFHLEFSIAVLF
WH_1_nsp3b_ADY39742_1_NA_China_Swine_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNYYPEFSIAVLF
TGEV_USA_Minnesota153_2014_NSP3b_ASV64431_1_2014_02_04_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHQVVSARTQNYYPEFSIAVLF
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSFHLEFSIAVLF
FCoVWSU791146_P1_ORF3c_AGZ84519_1_2011_USA_Cat_Alphacoronavirus_1 ------------------------------------------------------------
TGEV_USA_Wisconsin151_2014_NSP3b_ASV64413_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHQVVSARTQNYYPEFSIAVLF
TGEV_USA_Z_1986_NSP3b_ASV64279_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNYYPEFSIAVLF
AYU_NA_AEM55568_1_2009_China_Swine_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHHVVSARTQNYYPEFSIAVLF
UG_FH8_NA_ASU62491_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVTVNNTPHVNS------IVQQHHVVSASIKSFHLEFSIAVLF
SHXB_NA_AKA60056_1_2013_03_07_China_Swine_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNYYPEFSIAVLF
TH_98_NA_AML22778_1_1998_02_10_China_Swine_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHHVVSARTQNYYPEFSIAVLF
TS_nsp3b_ABC72416_1_NA_NA_Swine_Alphacoronavirus_1 MIGGLSLNTLSFVIVSNHSIVNNTANVHHIKQERVIVQQHQVVSARTQNYYPEFSIAVLF
Cat1_day7_NA_AMD11145_1_2013_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSFHLEFSIAVLF
80F_ORF_3c_AJO27016_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSFHLEFSIAVLF
Cat2_day21_withoutdeletion_NA_AMD11167_1_2013_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSFHLEFSIAVLF
Cat2_day84_NA_AMD11211_1_2013_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSFHLEFSIAVLF
UU18_NA_ADL71458_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSANIKSFHLEFSIAVLF
TGEV_USA_Minnesota150_2013_NSP3b_ASV64404_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHHVVSARTQNYYPEFSIAVLF
virulent_Purdue_NA_ABG89332_1_1952_USA_Swine_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNYYPEFSIAVLF
UU31_NA_ADL71489_1_2008_01_25_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVNNQHVIVNNTPHVNS------IVQQHHVVSANIKSFHLEFSIAVLF
FCoVWSU791146_P50_ORF3c_AGZ84539_1_2011_USA_Cat_Alphacoronavirus_1 ------------------------------------------------------------
UU2_NA_ACT10951_1_1993_03_30_USA_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSFHLEFSIAVLF
virulent_Miller_M6_NA_ABG89294_1_NA_USA_Swine_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHIKQERVIVQQHQVVSARTQNYYPEFSIAVLF
TGEV_USA_SouthDakota154_2014_NSP3b_ASV64440_1_2014_02_05_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVTNTANVHHTQQDHVIVQQHHVVSARTQNYYPEFSIAVLF
Felis_catus_NLD_UU88_2010_NS3c_AGT52083_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTSHVNS------IVQQHHVVSASIKSFHLEFSIAVLF
TGEV_USA_Iowa143_2008_NSP3b_ASV64342_1_2008_03_06_USA_Unknown_Alphacoronavirus_1 VSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYIDGIVTTTVLSLRLAYLAYFW
HLJ_HRB_2016_13_NA_AUG98144_1_2016_11_China_Cat_Alphacoronavirus_1 VLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYIDGIVTTTVLALRFIYLAYFW
TGEV_Mex_145_2008_NSP3b_ASV64360_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 VSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFVYLAYFW
TGEV_USA_Minnesota148_2013_NSP3b_ASV64386_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 VSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYIDGIVTTTVLSLRLAYLAYFW
UNKNOWN_HQ012372_NA_ADL71500_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 VLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFW
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 VLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYIDGIVTTTVLALRFIYLAYFW
WH_1_nsp3b_ADY39742_1_NA_China_Swine_Alphacoronavirus_1 VSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFVYLAYFW
TGEV_USA_Minnesota153_2014_NSP3b_ASV64431_1_2014_02_04_USA_Unknown_Alphacoronavirus_1 VSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYIDGIVTTTFLSLRLAYLAYFW
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 VLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYIDGIVTTTVLALRFIYLAYFW
FCoVWSU791146_P1_ORF3c_AGZ84519_1_2011_USA_Cat_Alphacoronavirus_1 -------------------MFKIVSMTLVGPMLIAYGYYIDGIVTITVLALRFFYLAYFW
TGEV_USA_Wisconsin151_2014_NSP3b_ASV64413_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 VSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYIDGIVTTTFLSLRLAYLAYFW
TGEV_USA_Z_1986_NSP3b_ASV64279_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 VSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFVYLAYFW
AYU_NA_AEM55568_1_2009_China_Swine_Alphacoronavirus_1 VSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFVYLAYFW
UG_FH8_NA_ASU62491_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 VLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFW
SHXB_NA_AKA60056_1_2013_03_07_China_Swine_Alphacoronavirus_1 VSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFVYLAYFW
TH_98_NA_AML22778_1_1998_02_10_China_Swine_Alphacoronavirus_1 VSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFVYLAYFW
TS_nsp3b_ABC72416_1_NA_NA_Swine_Alphacoronavirus_1 VSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFAYLAYFW
Cat1_day7_NA_AMD11145_1_2013_Belgium_Cat_Alphacoronavirus_1 VLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFW
80F_ORF_3c_AJO27016_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 VLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYIDGIVTTTVLALRFIYLAYFW
Cat2_day21_withoutdeletion_NA_AMD11167_1_2013_Belgium_Cat_Alphacoronavirus_1 VLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFW
Cat2_day84_NA_AMD11211_1_2013_Belgium_Cat_Alphacoronavirus_1 VLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFW
UU18_NA_ADL71458_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1 VLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYIDGIVTTTVLALRFIYLAYFW
TGEV_USA_Minnesota150_2013_NSP3b_ASV64404_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 VSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYIDGIVTTTVLSLRLAYLAYFW
virulent_Purdue_NA_ABG89332_1_1952_USA_Swine_Alphacoronavirus_1 VSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFVYLAYFW
UU31_NA_ADL71489_1_2008_01_25_Netherlands_Cat_Alphacoronavirus_1 VLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFW
FCoVWSU791146_P50_ORF3c_AGZ84539_1_2011_USA_Cat_Alphacoronavirus_1 -------------------MFKIVSMTLVGPMLIAYGYYIDGIVTITVLALRFLYLAYFW
UU2_NA_ACT10951_1_1993_03_30_USA_Cat_Alphacoronavirus_1 VLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFW
virulent_Miller_M6_NA_ABG89294_1_NA_USA_Swine_Alphacoronavirus_1 VSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFAYLAYFW
TGEV_USA_SouthDakota154_2014_NSP3b_ASV64440_1_2014_02_05_USA_Unknown_Alphacoronavirus_1 VSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYIDGIVTTTVLSLRLAYLAYFW
Felis_catus_NLD_UU88_2010_NS3c_AGT52083_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 VLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFW
****:****:*****.:*:******* *.*:**: ******
TGEV_USA_Iowa143_2008_NSP3b_ASV64342_1_2008_03_06_USA_Unknown_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLV
HLJ_HRB_2016_13_NA_AUG98144_1_2016_11_China_Cat_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMLVNDLTLHFVDPMLV
TGEV_Mex_145_2008_NSP3b_ASV64360_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLV
TGEV_USA_Minnesota148_2013_NSP3b_ASV64386_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLV
UNKNOWN_HQ012372_NA_ADL71500_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLV
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 YVNSKFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLV
WH_1_nsp3b_ADY39742_1_NA_China_Swine_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLV
TGEV_USA_Minnesota153_2014_NSP3b_ASV64431_1_2014_02_04_USA_Unknown_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLV
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 YVNSKFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLV
FCoVWSU791146_P1_ORF3c_AGZ84519_1_2011_USA_Cat_Alphacoronavirus_1 YVNSRSEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLV
TGEV_USA_Wisconsin151_2014_NSP3b_ASV64413_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLV
TGEV_USA_Z_1986_NSP3b_ASV64279_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLV
AYU_NA_AEM55568_1_2009_China_Swine_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLV
UG_FH8_NA_ASU62491_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLV
SHXB_NA_AKA60056_1_2013_03_07_China_Swine_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLV
TH_98_NA_AML22778_1_1998_02_10_China_Swine_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLV
TS_nsp3b_ABC72416_1_NA_NA_Swine_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVDDLTLHFVDPMLV
Cat1_day7_NA_AMD11145_1_2013_Belgium_Cat_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLV
80F_ORF_3c_AJO27016_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 YVNSKFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLV
Cat2_day21_withoutdeletion_NA_AMD11167_1_2013_Belgium_Cat_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLV
Cat2_day84_NA_AMD11211_1_2013_Belgium_Cat_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLV
UU18_NA_ADL71458_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLV
TGEV_USA_Minnesota150_2013_NSP3b_ASV64404_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLV
virulent_Purdue_NA_ABG89332_1_1952_USA_Swine_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLV
UU31_NA_ADL71489_1_2008_01_25_Netherlands_Cat_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLV
FCoVWSU791146_P50_ORF3c_AGZ84539_1_2011_USA_Cat_Alphacoronavirus_1 YVNSRSEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLV
UU2_NA_ACT10951_1_1993_03_30_USA_Cat_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLV
virulent_Miller_M6_NA_ABG89294_1_NA_USA_Swine_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLV
TGEV_USA_SouthDakota154_2014_NSP3b_ASV64440_1_2014_02_05_USA_Unknown_Alphacoronavirus_1 YVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLV
Felis_catus_NLD_UU88_2010_NS3c_AGT52083_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 YVNSRFELILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLV
****: *:************.***** ****.*************:*:************
TGEV_USA_Iowa143_2008_NSP3b_ASV64342_1_2008_03_06_USA_Unknown_Alphacoronavirus_1 SIAIRGLNHADLTVVRAVELLNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRT
HLJ_HRB_2016_13_NA_AUG98144_1_2016_11_China_Cat_Alphacoronavirus_1 GIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RV
TGEV_Mex_145_2008_NSP3b_ASV64360_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 SIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHT
TGEV_USA_Minnesota148_2013_NSP3b_ASV64386_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 SIAIRGLNHADLTVVRAVELLNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRT
UNKNOWN_HQ012372_NA_ADL71500_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 GIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RV
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 GIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVV-------MQPFLRRL----------
WH_1_nsp3b_ADY39742_1_NA_China_Swine_Alphacoronavirus_1 SIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHT
TGEV_USA_Minnesota153_2014_NSP3b_ASV64431_1_2014_02_04_USA_Unknown_Alphacoronavirus_1 SIAIRGLNHADLTVVRAVELLNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRT
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 GIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVV-------MQPFLRRL----------
FCoVWSU791146_P1_ORF3c_AGZ84519_1_2011_USA_Cat_Alphacoronavirus_1 RIAIRGLAHADLTVFRAVELLNGDFIYVFSQEPVAGVYNAASSQAVLNEIDLKEEEEDHN
TGEV_USA_Wisconsin151_2014_NSP3b_ASV64413_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 SIAIRGLNHADLTVVRAVELLNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRT
TGEV_USA_Z_1986_NSP3b_ASV64279_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 SIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHT
AYU_NA_AEM55568_1_2009_China_Swine_Alphacoronavirus_1 SIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHT
UG_FH8_NA_ASU62491_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 GIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RV
SHXB_NA_AKA60056_1_2013_03_07_China_Swine_Alphacoronavirus_1 SIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHT
TH_98_NA_AML22778_1_1998_02_10_China_Swine_Alphacoronavirus_1 SIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHT
TS_nsp3b_ABC72416_1_NA_NA_Swine_Alphacoronavirus_1 SIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDRA
Cat1_day7_NA_AMD11145_1_2013_Belgium_Cat_Alphacoronavirus_1 GIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RV
80F_ORF_3c_AJO27016_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 GIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RV
Cat2_day21_withoutdeletion_NA_AMD11167_1_2013_Belgium_Cat_Alphacoronavirus_1 GIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RV
Cat2_day84_NA_AMD11211_1_2013_Belgium_Cat_Alphacoronavirus_1 GIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RV
UU18_NA_ADL71458_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1 GIAVRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RV
TGEV_USA_Minnesota150_2013_NSP3b_ASV64404_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 SIAIRGLNHADLTVVRAVELLNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRT
virulent_Purdue_NA_ABG89332_1_1952_USA_Swine_Alphacoronavirus_1 SIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHT
UU31_NA_ADL71489_1_2008_01_25_Netherlands_Cat_Alphacoronavirus_1 GIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RV
FCoVWSU791146_P50_ORF3c_AGZ84539_1_2011_USA_Cat_Alphacoronavirus_1 RIAIRGLAHADLTVFRAVELLNGDFIYVFSQEPVAGVYNAASSQAVLNEIDLKEEEEDHN
UU2_NA_ACT10951_1_1993_03_30_USA_Cat_Alphacoronavirus_1 GIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RV
virulent_Miller_M6_NA_ABG89294_1_NA_USA_Swine_Alphacoronavirus_1 SIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDRT
TGEV_USA_SouthDakota154_2014_NSP3b_ASV64440_1_2014_02_05_USA_Unknown_Alphacoronavirus_1 SIAIRGLNHADLTVVRAVELLNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRT
Felis_catus_NLD_UU88_2010_NS3c_AGT52083_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 GIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RV
**:*** :*****.************:****.*. *..:..:
TGEV_USA_Iowa143_2008_NSP3b_ASV64342_1_2008_03_06_USA_Unknown_Alphacoronavirus_1 YDVS
HLJ_HRB_2016_13_NA_AUG98144_1_2016_11_China_Cat_Alphacoronavirus_1 YDVS
TGEV_Mex_145_2008_NSP3b_ASV64360_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 YDVS
TGEV_USA_Minnesota148_2013_NSP3b_ASV64386_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 YDVS
UNKNOWN_HQ012372_NA_ADL71500_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 YDVS
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ----
WH_1_nsp3b_ADY39742_1_NA_China_Swine_Alphacoronavirus_1 YDVS
TGEV_USA_Minnesota153_2014_NSP3b_ASV64431_1_2014_02_04_USA_Unknown_Alphacoronavirus_1 YDVS
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ----
FCoVWSU791146_P1_ORF3c_AGZ84519_1_2011_USA_Cat_Alphacoronavirus_1 YDVP
TGEV_USA_Wisconsin151_2014_NSP3b_ASV64413_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 YDVS
TGEV_USA_Z_1986_NSP3b_ASV64279_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 YDVS
AYU_NA_AEM55568_1_2009_China_Swine_Alphacoronavirus_1 YDVS
UG_FH8_NA_ASU62491_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 YDVS
SHXB_NA_AKA60056_1_2013_03_07_China_Swine_Alphacoronavirus_1 YDVS
TH_98_NA_AML22778_1_1998_02_10_China_Swine_Alphacoronavirus_1 YDVS
TS_nsp3b_ABC72416_1_NA_NA_Swine_Alphacoronavirus_1 YDVS
Cat1_day7_NA_AMD11145_1_2013_Belgium_Cat_Alphacoronavirus_1 YDVS
80F_ORF_3c_AJO27016_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 YDVS
Cat2_day21_withoutdeletion_NA_AMD11167_1_2013_Belgium_Cat_Alphacoronavirus_1 YDVS
Cat2_day84_NA_AMD11211_1_2013_Belgium_Cat_Alphacoronavirus_1 YDVS
UU18_NA_ADL71458_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1 YDVS
TGEV_USA_Minnesota150_2013_NSP3b_ASV64404_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 YDVS
virulent_Purdue_NA_ABG89332_1_1952_USA_Swine_Alphacoronavirus_1 YDVS
UU31_NA_ADL71489_1_2008_01_25_Netherlands_Cat_Alphacoronavirus_1 YDVS
FCoVWSU791146_P50_ORF3c_AGZ84539_1_2011_USA_Cat_Alphacoronavirus_1 YDVP
UU2_NA_ACT10951_1_1993_03_30_USA_Cat_Alphacoronavirus_1 YDVS
virulent_Miller_M6_NA_ABG89294_1_NA_USA_Swine_Alphacoronavirus_1 YDVS
TGEV_USA_SouthDakota154_2014_NSP3b_ASV64440_1_2014_02_05_USA_Unknown_Alphacoronavirus_1 YDVS
Felis_catus_NLD_UU88_2010_NS3c_AGT52083_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 YDVS
>TGEV_USA_Iowa143_2008_NSP3b_ASV64342_1_2008_03_06_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAATCATTCTATTGTCAATAACACAGCAAATGTGCATCATACACAACAAGACCGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCC--------------------- >HLJ_HRB_2016_13_NA_AUG98144_1_2016_11_China_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTCACTAATCAACATGTGATTGTTAATAACACATCACATGTCAATTCC------------------ATAGTACAACAGCATCATGTTGTTAGTGCTAATATTAAAAGTTTTCATCTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTGGCTTTAAGATTTATTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACACTATATGGAGGCATAAATTATATGCTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGATCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTCGTGGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >TGEV_Mex_145_2008_NSP3b_ASV64360_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >TGEV_USA_Minnesota148_2013_NSP3b_ASV64386_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTCAATAACACAGCAAATGTGCATCATACACAACAAGACCATGTTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTCGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCC--------------------- >UNKNOWN_HQ012372_NA_ADL71500_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATCAAAAGTTTTCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTCCTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTTGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTCTATACAATACAACGACACTTATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGTTCTATTTATGTCACATTATATGGCGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAACGGTGATTTTATTTATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAA---CGTGTCTATGATGTTTCC--------------------- >27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTACTCAACATGTGGTTGTTAATAACACACCACATTTTAATACT------------------GTAGTGCAACAACATCATGTTGTTAGTGCTAATGTTAAAAGTTTTCATCTAGAGTTCAGCATAGCTGTTCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGCGTGTGTCGGTATCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTCACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCATTTACTTAGCATACTTTTGGTATGTTAATAGTAAATTTGAATTTATTTTATATAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTGTATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTCGTA---------------------ATGCAGCCTTTTCTCAGGCGGTTA--------------------------------------------------------------- >WH_1_nsp3b_ADY39742_1_NA_China_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >TGEV_USA_Minnesota153_2014_NSP3b_ASV64431_1_2014_02_04_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATACACAACAAGACCATGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTTTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTACATGTTTGTGAACGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCT--------------------- >26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTACTCAACATGTGGTTGTTAATAACACACCACATTTTAATACT------------------GTAGTGCAACAACATCATGTTGTTAGTGCTAATGTTAAAAGTTTTCATCTAGAGTTCAGCATAGCTGTTCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGCGTGTGTCGGTATCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTCACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCATTTACTTAGCATACTTTTGGTATGTTAATAGTAAATTTGAATTTATTTTATATAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTGTATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTCGTA---------------------ATGCAGCCTTTTCTCAGGCGGTTA--------------------------------------------------------------- >FCoVWSU791146_P1_ORF3c_AGZ84519_1_2011_USA_Cat_Alphacoronavirus_1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTAAGATTGTATCAATGACACTTGTAGGGCCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAATAACTGTCTTAGCTTTAAGATTTTTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTCCGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGAATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTTTTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATATATGTATTTTCACAGGAGCCCGTAGCCGGTGTTTACAATGCAGCCTCTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATAACTATGACGTTCCC--------------------- >TGEV_USA_Wisconsin151_2014_NSP3b_ASV64413_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATACACAACAAGACCATGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTTTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTACATGTTTGTGAACGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCT--------------------- >TGEV_USA_Z_1986_NSP3b_ASV64279_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >AYU_NA_AEM55568_1_2009_China_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >UG_FH8_NA_ASU62491_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAACCAACATGTGACTGTAAACAACACACCACATGTTAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATCAAAAGTTTTCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTTGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATACGGAGGCATAAATTATATGTTCGTGAATGATCTCACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGCGGCTTAGTTCGTGCTGACTTAACAGTAGTTAGGGCAGTTGAACTTCTCAATGGTGACTTTATATATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTGAAAGAAGAAGAAGAA---CGTGTCTATGATGTTTCC--------------------- >SHXB_NA_AKA60056_1_2013_03_07_China_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >TH_98_NA_AML22778_1_1998_02_10_China_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAGTACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >TS_nsp3b_ABC72416_1_NA_NA_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTCTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATAAAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGGATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCGTGCCTATGACGTTTCC--------------------- >Cat1_day7_NA_AMD11145_1_2013_Belgium_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGTCTGTGTCAGTGTCTTAATGTTTAAGATAATATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTGGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAGCTTCTCAATGGTGATTTTATATATATATTTTCACAGGAAGCCGTGGTCGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >80F_ORF_3c_AJO27016_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTACTCAACATGTGGTTGTTAATAACACACCACATTTTAATACT------------------GTAGTGCAACAACATCATGTTGTTAGTGCTAATGTTAAAAGTTTTCATCTAGAGTTCAGCATAGCTGTTCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGCGTGTGTCGGTATCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTCACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCATTTACTTAGCATACTTTTGGTATGTTAATAGTAAATTTGAATTTATTTTATATAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTGTATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAA---CGTGTCTATGATGTTTCC--------------------- >Cat2_day21_withoutdeletion_NA_AMD11167_1_2013_Belgium_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGTCTGTGTCAGTGTCTTAATGTTTAAGATAATATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTGGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAGCTTCTCAATGGTGATTTTATATATATATTTTCACAGGAAGCCGTGGTCGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >Cat2_day84_NA_AMD11211_1_2013_Belgium_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGTCTGTGTCAGTGTCTTAATGTTTAAGATAATATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTGGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAGCTTCTCAATGGTGATTTTATATATATATTTTCACAGGAAGCCGTGGTCGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >UU18_NA_ADL71458_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACACTAAGTTTTATAGTCACTAATCAACATGTGATTGTTAATAACACTCCACATGTCAATTCT------------------ATAGTACAACAACATCACGTTGTTAGTGCTAATATTAAAAGTTTTCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTCCTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCGTTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTTATTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTTATTTTATACAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTGTACGCGGCCTAGTTCGCGCTGACCTAACGGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTGAAAGAAGAAGAAGAA---CGTGTCTATGATGTTTCC--------------------- >TGEV_USA_Minnesota150_2013_NSP3b_ASV64404_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTCAATAACACAGCAAATGTGCATCATACACAACAAGACCATGTTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTCGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCC--------------------- >virulent_Purdue_NA_ABG89332_1_1952_USA_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATACAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAACTATTACCCAGAGTTCAGCATCGCTGTACTCTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATACCTATGACGTTTCC--------------------- >UU31_NA_ADL71489_1_2008_01_25_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTAATAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAATATTAAAAGTTTTCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCGTTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTTGTTTACTTGGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATCTTATATAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGGGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGATCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGGCCGTAGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >FCoVWSU791146_P50_ORF3c_AGZ84539_1_2011_USA_Cat_Alphacoronavirus_1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTAAGATTGTATCAATGACACTTGTAGGGCCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAATAACTGTCTTAGCTTTAAGATTTCTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTCCGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGAATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTTTTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATATATGTATTTTCACAGGAGCCCGTAGCCGGTGTTTACAATGCAGCCTCTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATAACTATGACGTTCCC--------------------- >UU2_NA_ACT10951_1_1993_03_30_USA_Cat_Alphacoronavirus_1 ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGTCTGTGTCAGTGTCTTAATGTTTAAGATAATATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTGGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAGCTTCTCAATGGTGATTTTATATATATATTTTCACAGGAAGCCGTGGTCGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC--------------------- >virulent_Miller_M6_NA_ABG89294_1_NA_USA_Swine_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTTAATAACACAGCAAATGTGCATCATATAAAACAAGAACGTGTTATAGTACAACAGCATCAGGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTTCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGCATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGATTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTTGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATGTATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCGTACCTATGACGTTTCC--------------------- >TGEV_USA_SouthDakota154_2014_NSP3b_ASV64440_1_2014_02_05_USA_Unknown_Alphacoronavirus_1 ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTCACTAACACAGCAAATGTGCATCATACACAACAAGACCATGTTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTATATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTCGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCC--------------------- >Felis_catus_NLD_UU88_2010_NS3c_AGT52083_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 ATGATTGGCGGATTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAATAACACATCACATGTCAATTCT------------------ATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATCTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTGTTTTTAGCTTTGTACCGTAGTACAAACTTTAAAGTGTGTGTCGGTGTCTTAATGTTTAAGATAGTCTCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTTACTACATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTTGTTTACTTAGCATACTTCTGGTATGTTAATAGTAGGTTTGAACTCATTCTATATAATACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTGTATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTCGTAGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAG---CGTGTCTATGATGTTTCC---------------------
>TGEV_USA_Iowa143_2008_NSP3b_ASV64342_1_2008_03_06_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDRVIVQQHQVVSARTQNYYPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYIDGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVELLNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS >HLJ_HRB_2016_13_NA_AUG98144_1_2016_11_China_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTSHVNS------IVQQHHVVSANIKSFHLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYIDGIVTTTVLALRFIYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMLVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS >TGEV_Mex_145_2008_NSP3b_ASV64360_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNYYPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS >TGEV_USA_Minnesota148_2013_NSP3b_ASV64386_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHHVVSARTQNYYPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYIDGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVELLNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS >UNKNOWN_HQ012372_NA_ADL71500_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSFHLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS >27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSFHLEFSIAVLFVLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYIDGIVTTTVLALRFIYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVV-------MQPFLRRL-------------- >WH_1_nsp3b_ADY39742_1_NA_China_Swine_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNYYPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS >TGEV_USA_Minnesota153_2014_NSP3b_ASV64431_1_2014_02_04_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHQVVSARTQNYYPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYIDGIVTTTFLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVELLNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS >26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSFHLEFSIAVLFVLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYIDGIVTTTVLALRFIYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVV-------MQPFLRRL-------------- >FCoVWSU791146_P1_ORF3c_AGZ84519_1_2011_USA_Cat_Alphacoronavirus_1 -------------------------------------------------------------------------------MFKIVSMTLVGPMLIAYGYYIDGIVTITVLALRFFYLAYFWYVNSRSEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVRIAIRGLAHADLTVFRAVELLNGDFIYVFSQEPVAGVYNAASSQAVLNEIDLKEEEEDHNYDVP >TGEV_USA_Wisconsin151_2014_NSP3b_ASV64413_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHQVVSARTQNYYPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYIDGIVTTTFLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVELLNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS >TGEV_USA_Z_1986_NSP3b_ASV64279_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNYYPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS >AYU_NA_AEM55568_1_2009_China_Swine_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHHVVSARTQNYYPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS >UG_FH8_NA_ASU62491_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVTVNNTPHVNS------IVQQHHVVSASIKSFHLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS >SHXB_NA_AKA60056_1_2013_03_07_China_Swine_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNYYPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS >TH_98_NA_AML22778_1_1998_02_10_China_Swine_Alphacoronavirus_1 MIGGLFLSTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHHVVSARTQNYYPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS >TS_nsp3b_ABC72416_1_NA_NA_Swine_Alphacoronavirus_1 MIGGLSLNTLSFVIVSNHSIVNNTANVHHIKQERVIVQQHQVVSARTQNYYPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVDDLTLHFVDPMLVSIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDRAYDVS >Cat1_day7_NA_AMD11145_1_2013_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSFHLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS >80F_ORF_3c_AJO27016_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTTQHVVVNNTPHFNT------VVQQHHVVSANVKSFHLEFSIAVLFVLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYIDGIVTTTVLALRFIYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS >Cat2_day21_withoutdeletion_NA_AMD11167_1_2013_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSFHLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS >Cat2_day84_NA_AMD11211_1_2013_Belgium_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSFHLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS >UU18_NA_ADL71458_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSANIKSFHLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYIDGIVTTTVLALRFIYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAVRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS >TGEV_USA_Minnesota150_2013_NSP3b_ASV64404_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHHVVSARTQNYYPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYIDGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVELLNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS >virulent_Purdue_NA_ABG89332_1_1952_USA_Swine_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHIQQERVIVQQHQVVSARTQNYYPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFVYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDHTYDVS >UU31_NA_ADL71489_1_2008_01_25_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVNNQHVIVNNTPHVNS------IVQQHHVVSANIKSFHLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS >FCoVWSU791146_P50_ORF3c_AGZ84539_1_2011_USA_Cat_Alphacoronavirus_1 -------------------------------------------------------------------------------MFKIVSMTLVGPMLIAYGYYIDGIVTITVLALRFLYLAYFWYVNSRSEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVRIAIRGLAHADLTVFRAVELLNGDFIYVFSQEPVAGVYNAASSQAVLNEIDLKEEEEDHNYDVP >UU2_NA_ACT10951_1_1993_03_30_USA_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTPHVNS------IVQQHHVVSASIKSFHLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS >virulent_Miller_M6_NA_ABG89294_1_NA_USA_Swine_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVNNTANVHHIKQERVIVQQHQVVSARTQNYYPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIAYGYYIDGIVTTTVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQAVLNEIDLKEEEEDRTYDVS >TGEV_USA_SouthDakota154_2014_NSP3b_ASV64440_1_2014_02_05_USA_Unknown_Alphacoronavirus_1 MIGGLFLNTLSFVIVSNHSIVTNTANVHHTQQDHVIVQQHHVVSARTQNYYPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYIDGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVELLNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS >Felis_catus_NLD_UU88_2010_NS3c_AGT52083_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 MIGGLFLNTLSFIVTNQHVIVNNTSHVNS------IVQQHHVVSASIKSFHLEFSIAVLFVLFLALYRSTNFKVCVGVLMFKIVSMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFWYVNSRFELILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVGVYNAAFSQAVINEIDLKEEEE-RVYDVS
Reading sequence file /data//pss_subsets/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/codeml/fasta/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1
Found 30 sequences of length 753
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 8.2%
Found 152 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0% 88.4%100.0%
Using a window size of 80 with k as 16
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 61 polymorphic sites
**p-Value(s)**
----------
NSS: 1.69e-01 (1000 permutations)
Max Chi^2: 5.00e-03 (1000 permutations)
PHI (Permutation): 9.93e-01 (1000 permutations)
PHI (Normal): 9.92e-01
#NEXUS
[ID: 8996881339]
begin taxa;
dimensions ntax=30;
taxlabels
TGEV_USA_Z_1986_NSP3b_ASV64279_1_2006_12_08_USA_Unknown_Alphacoronavirus_1
TGEV_USA_Wisconsin151_2014_NSP3b_ASV64413_1_2014_01_17_USA_Unknown_Alphacoronavirus_1
AYU_NA_AEM55568_1_2009_China_Swine_Alphacoronavirus_1
TS_nsp3b_ABC72416_1_NA_NA_Swine_Alphacoronavirus_1
TH_98_NA_AML22778_1_1998_02_10_China_Swine_Alphacoronavirus_1
Cat1_day7_NA_AMD11145_1_2013_Belgium_Cat_Alphacoronavirus_1
UU18_NA_ADL71458_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1
Cat2_day84_NA_AMD11211_1_2013_Belgium_Cat_Alphacoronavirus_1
UU2_NA_ACT10951_1_1993_03_30_USA_Cat_Alphacoronavirus_1
FCoVWSU791146_P50_ORF3c_AGZ84539_1_2011_USA_Cat_Alphacoronavirus_1
TGEV_USA_Minnesota148_2013_NSP3b_ASV64386_1_2013_01_04_USA_Unknown_Alphacoronavirus_1
Felis_catus_NLD_UU88_2010_NS3c_AGT52083_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1
TGEV_USA_Minnesota153_2014_NSP3b_ASV64431_1_2014_02_04_USA_Unknown_Alphacoronavirus_1
TGEV_USA_Iowa143_2008_NSP3b_ASV64342_1_2008_03_06_USA_Unknown_Alphacoronavirus_1
TGEV_Mex_145_2008_NSP3b_ASV64360_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1
HLJ_HRB_2016_13_NA_AUG98144_1_2016_11_China_Cat_Alphacoronavirus_1
27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
UNKNOWN_HQ012372_NA_ADL71500_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1
WH_1_nsp3b_ADY39742_1_NA_China_Swine_Alphacoronavirus_1
FCoVWSU791146_P1_ORF3c_AGZ84519_1_2011_USA_Cat_Alphacoronavirus_1
UG_FH8_NA_ASU62491_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1
SHXB_NA_AKA60056_1_2013_03_07_China_Swine_Alphacoronavirus_1
Cat2_day21_withoutdeletion_NA_AMD11167_1_2013_Belgium_Cat_Alphacoronavirus_1
80F_ORF_3c_AJO27016_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
UU31_NA_ADL71489_1_2008_01_25_Netherlands_Cat_Alphacoronavirus_1
TGEV_USA_Minnesota150_2013_NSP3b_ASV64404_1_2013_03_01_USA_Unknown_Alphacoronavirus_1
virulent_Purdue_NA_ABG89332_1_1952_USA_Swine_Alphacoronavirus_1
26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
TGEV_USA_SouthDakota154_2014_NSP3b_ASV64440_1_2014_02_05_USA_Unknown_Alphacoronavirus_1
virulent_Miller_M6_NA_ABG89294_1_NA_USA_Swine_Alphacoronavirus_1
;
end;
begin trees;
translate
1 TGEV_USA_Z_1986_NSP3b_ASV64279_1_2006_12_08_USA_Unknown_Alphacoronavirus_1,
2 TGEV_USA_Wisconsin151_2014_NSP3b_ASV64413_1_2014_01_17_USA_Unknown_Alphacoronavirus_1,
3 AYU_NA_AEM55568_1_2009_China_Swine_Alphacoronavirus_1,
4 TS_nsp3b_ABC72416_1_NA_NA_Swine_Alphacoronavirus_1,
5 TH_98_NA_AML22778_1_1998_02_10_China_Swine_Alphacoronavirus_1,
6 Cat1_day7_NA_AMD11145_1_2013_Belgium_Cat_Alphacoronavirus_1,
7 UU18_NA_ADL71458_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1,
8 Cat2_day84_NA_AMD11211_1_2013_Belgium_Cat_Alphacoronavirus_1,
9 UU2_NA_ACT10951_1_1993_03_30_USA_Cat_Alphacoronavirus_1,
10 FCoVWSU791146_P50_ORF3c_AGZ84539_1_2011_USA_Cat_Alphacoronavirus_1,
11 TGEV_USA_Minnesota148_2013_NSP3b_ASV64386_1_2013_01_04_USA_Unknown_Alphacoronavirus_1,
12 Felis_catus_NLD_UU88_2010_NS3c_AGT52083_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1,
13 TGEV_USA_Minnesota153_2014_NSP3b_ASV64431_1_2014_02_04_USA_Unknown_Alphacoronavirus_1,
14 TGEV_USA_Iowa143_2008_NSP3b_ASV64342_1_2008_03_06_USA_Unknown_Alphacoronavirus_1,
15 TGEV_Mex_145_2008_NSP3b_ASV64360_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1,
16 HLJ_HRB_2016_13_NA_AUG98144_1_2016_11_China_Cat_Alphacoronavirus_1,
17 27C_ORF_3c_AJO26976_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
18 UNKNOWN_HQ012372_NA_ADL71500_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1,
19 WH_1_nsp3b_ADY39742_1_NA_China_Swine_Alphacoronavirus_1,
20 FCoVWSU791146_P1_ORF3c_AGZ84519_1_2011_USA_Cat_Alphacoronavirus_1,
21 UG_FH8_NA_ASU62491_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1,
22 SHXB_NA_AKA60056_1_2013_03_07_China_Swine_Alphacoronavirus_1,
23 Cat2_day21_withoutdeletion_NA_AMD11167_1_2013_Belgium_Cat_Alphacoronavirus_1,
24 80F_ORF_3c_AJO27016_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
25 UU31_NA_ADL71489_1_2008_01_25_Netherlands_Cat_Alphacoronavirus_1,
26 TGEV_USA_Minnesota150_2013_NSP3b_ASV64404_1_2013_03_01_USA_Unknown_Alphacoronavirus_1,
27 virulent_Purdue_NA_ABG89332_1_1952_USA_Swine_Alphacoronavirus_1,
28 26M_ORF_3c_AJO27026_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
29 TGEV_USA_SouthDakota154_2014_NSP3b_ASV64440_1_2014_02_05_USA_Unknown_Alphacoronavirus_1,
30 virulent_Miller_M6_NA_ABG89294_1_NA_USA_Swine_Alphacoronavirus_1
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:8.214817e-04,15:7.881372e-04,19:8.316381e-04,22:8.177013e-04,(((((2:8.016007e-04,13:8.266286e-04)1.000:6.750667e-03,(11:8.334668e-04,26:8.343245e-04,29:3.269639e-03)0.999:3.494945e-03)0.712:2.021085e-03,14:2.212889e-03)1.000:2.000632e-02,(4:4.650758e-03,30:8.788342e-04)0.888:2.096585e-03)0.998:7.154274e-03,27:8.937598e-04)0.709:1.884112e-03,((3:8.372779e-04,5:8.154940e-04)0.628:1.577068e-03,(((6:9.155003e-04,8:8.746752e-04,9:8.658640e-04,23:8.610982e-04)1.000:1.987303e-02,7:1.971252e-02,12:1.492075e-02,16:1.577676e-02,((17:9.224295e-04,28:9.065209e-04)1.000:2.299349e-02,24:9.551527e-04)1.000:2.965810e-02,18:8.559888e-03,21:2.064859e-02,25:1.338551e-02)1.000:1.229225e-01,(10:1.942679e-03,20:2.155292e-03)1.000:2.296551e-02)0.977:1.583886e-02)0.571:1.981559e-03);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:8.214817e-04,15:7.881372e-04,19:8.316381e-04,22:8.177013e-04,(((((2:8.016007e-04,13:8.266286e-04):6.750667e-03,(11:8.334668e-04,26:8.343245e-04,29:3.269639e-03):3.494945e-03):2.021085e-03,14:2.212889e-03):2.000632e-02,(4:4.650758e-03,30:8.788342e-04):2.096585e-03):7.154274e-03,27:8.937598e-04):1.884112e-03,((3:8.372779e-04,5:8.154940e-04):1.577068e-03,(((6:9.155003e-04,8:8.746752e-04,9:8.658640e-04,23:8.610982e-04):1.987303e-02,7:1.971252e-02,12:1.492075e-02,16:1.577676e-02,((17:9.224295e-04,28:9.065209e-04):2.299349e-02,24:9.551527e-04):2.965810e-02,18:8.559888e-03,21:2.064859e-02,25:1.338551e-02):1.229225e-01,(10:1.942679e-03,20:2.155292e-03):2.296551e-02):1.583886e-02):1.981559e-03);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -2344.89 -2383.32
2 -2343.70 -2375.58
--------------------------------------
TOTAL -2344.13 -2382.62
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.456464 0.001869 0.374098 0.538351 0.454159 932.54 1216.77 1.000
r(A<->C){all} 0.120457 0.000604 0.071226 0.167809 0.119123 883.42 885.56 1.000
r(A<->G){all} 0.282372 0.001399 0.210266 0.355270 0.281822 671.60 732.72 1.000
r(A<->T){all} 0.046773 0.000148 0.025730 0.070824 0.045955 1035.11 1054.67 1.000
r(C<->G){all} 0.058909 0.000497 0.021058 0.104925 0.056914 608.59 698.02 1.000
r(C<->T){all} 0.438620 0.001654 0.361310 0.517211 0.438733 447.61 556.22 1.000
r(G<->T){all} 0.052870 0.000210 0.025903 0.080814 0.051682 940.61 962.90 1.001
pi(A){all} 0.282581 0.000236 0.254312 0.313861 0.282287 1100.89 1147.25 1.001
pi(C){all} 0.170744 0.000163 0.144672 0.194130 0.170376 1069.96 1080.78 1.001
pi(G){all} 0.190468 0.000180 0.164190 0.215014 0.190072 841.81 956.63 1.000
pi(T){all} 0.356207 0.000270 0.324715 0.388956 0.356727 988.81 1039.46 1.001
alpha{1,2} 0.746113 0.261338 0.176924 1.816016 0.597796 638.85 753.36 1.001
alpha{3} 1.391806 0.849106 0.296931 3.343927 1.121170 804.38 836.07 1.001
pinvar{all} 0.323031 0.018332 0.037497 0.537164 0.338109 471.33 524.44 1.002
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/A76_NS3c_AEQ61970_1_1976_USA_Dog_Alphacoronavirus_1.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 30 ls = 144
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 10 10 11 9 10 11 | Ser TCT 4 3 4 4 3 2 | Tyr TAT 6 5 6 6 5 7 | Cys TGT 0 0 0 0 0 0
TTC 0 1 0 1 2 2 | TCC 0 0 0 0 0 0 | TAC 5 5 5 5 5 2 | TGC 0 0 0 0 0 0
Leu TTA 8 3 7 8 4 5 | TCA 2 2 2 2 2 2 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 1 2 2 1 1 2 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 5 4 4 5 6 5 | Pro CCT 2 2 2 2 2 3 | His CAT 3 2 3 3 2 2 | Arg CGT 1 2 1 1 2 2
CTC 3 3 3 3 1 2 | CCC 1 0 1 1 0 0 | CAC 1 1 1 1 1 2 | CGC 0 0 0 0 0 0
CTA 2 4 2 2 3 3 | CCA 0 0 0 0 0 0 | Gln CAA 0 0 0 0 0 0 | CGA 0 0 0 0 0 0
CTG 0 0 0 0 0 0 | CCG 1 1 1 1 1 1 | CAG 2 2 2 2 2 2 | CGG 0 0 0 0 0 1
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 7 5 7 7 5 4 | Thr ACT 2 1 2 2 1 1 | Asn AAT 5 5 5 5 4 4 | Ser AGT 2 2 2 2 2 2
ATC 0 1 0 0 0 1 | ACC 0 0 0 0 0 0 | AAC 2 1 1 2 2 1 | AGC 2 0 2 2 0 0
ATA 5 9 4 5 9 8 | ACA 6 7 6 6 7 7 | Lys AAA 0 0 0 0 0 1 | Arg AGA 4 5 4 4 5 4
Met ATG 6 7 7 6 7 8 | ACG 2 2 2 2 2 2 | AAG 2 1 1 2 1 1 | AGG 1 0 1 1 0 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 5 6 5 5 7 5 | Ala GCT 2 4 3 2 4 4 | Asp GAT 3 4 3 3 3 3 | Gly GGT 3 2 3 3 3 2
GTC 3 3 4 3 3 3 | GCC 1 1 0 1 1 1 | GAC 2 2 2 2 3 3 | GGC 4 5 4 4 5 5
GTA 6 4 6 6 5 5 | GCA 4 4 5 4 4 4 | Glu GAA 3 3 3 3 3 2 | GGA 1 2 1 1 1 2
GTG 1 3 1 1 2 2 | GCG 1 1 1 1 1 0 | GAG 1 1 1 1 1 1 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 11 10 11 11 10 11 | Ser TCT 4 4 2 3 4 4 | Tyr TAT 6 5 7 6 5 6 | Cys TGT 0 0 0 0 0 0
TTC 0 1 2 1 1 0 | TCC 0 0 0 1 0 0 | TAC 5 6 2 5 6 5 | TGC 0 0 0 0 0 0
Leu TTA 7 8 5 5 8 7 | TCA 2 2 2 2 2 2 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 2 1 2 2 1 2 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 4 5 5 4 5 4 | Pro CCT 2 2 3 2 2 2 | His CAT 3 3 2 3 3 3 | Arg CGT 1 1 2 1 1 1
CTC 3 3 2 3 3 3 | CCC 1 1 0 1 1 1 | CAC 1 1 2 1 1 1 | CGC 0 0 0 0 0 0
CTA 2 2 3 2 2 2 | CCA 0 0 0 0 0 0 | Gln CAA 0 0 0 0 0 0 | CGA 0 0 0 0 0 0
CTG 0 0 0 0 0 0 | CCG 1 1 1 1 1 1 | CAG 2 2 2 2 2 2 | CGG 0 0 1 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 7 7 4 6 7 7 | Thr ACT 2 2 1 2 2 2 | Asn AAT 5 4 4 5 4 5 | Ser AGT 2 2 2 2 2 2
ATC 0 0 1 0 0 0 | ACC 0 0 0 0 0 0 | AAC 1 3 1 1 3 1 | AGC 2 2 0 1 2 2
ATA 4 5 8 6 5 4 | ACA 6 6 7 5 6 6 | Lys AAA 0 0 1 0 0 0 | Arg AGA 4 4 4 5 4 4
Met ATG 7 6 8 7 6 7 | ACG 2 2 2 2 2 2 | AAG 1 2 1 1 2 1 | AGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 5 5 5 5 5 5 | Ala GCT 3 2 4 4 2 3 | Asp GAT 3 3 3 3 3 3 | Gly GGT 3 3 2 3 3 3
GTC 4 2 3 2 2 4 | GCC 0 1 1 1 1 0 | GAC 2 2 3 2 2 2 | GGC 4 4 5 4 4 4
GTA 6 6 5 7 6 6 | GCA 5 4 4 5 4 5 | Glu GAA 3 3 2 3 3 3 | GGA 1 1 2 0 1 1
GTG 1 1 2 1 1 1 | GCG 1 1 0 1 1 1 | GAG 1 1 1 1 1 1 | GGG 0 0 0 1 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 11 10 11 11 11 9 | Ser TCT 4 3 4 4 4 3 | Tyr TAT 6 4 6 6 6 6 | Cys TGT 0 0 0 0 0 0
TTC 0 2 0 0 0 3 | TCC 0 0 0 0 0 0 | TAC 5 6 5 5 5 4 | TGC 0 0 0 0 0 0
Leu TTA 7 7 7 7 7 5 | TCA 2 2 2 2 2 2 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 2 1 2 2 2 1 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 4 4 4 4 4 4 | Pro CCT 2 2 2 2 2 2 | His CAT 3 2 3 3 3 2 | Arg CGT 1 1 1 1 1 2
CTC 3 2 3 3 3 2 | CCC 1 0 1 1 1 0 | CAC 1 1 1 1 1 1 | CGC 0 1 0 0 0 0
CTA 2 1 2 2 2 3 | CCA 0 0 0 0 0 0 | Gln CAA 0 0 0 0 0 0 | CGA 0 0 0 0 0 0
CTG 0 0 0 0 0 0 | CCG 1 1 1 1 1 1 | CAG 2 2 2 2 2 2 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 7 4 7 7 7 4 | Thr ACT 2 1 2 2 2 1 | Asn AAT 5 5 5 5 4 4 | Ser AGT 2 2 2 2 2 2
ATC 0 0 0 0 0 0 | ACC 0 0 0 0 0 0 | AAC 1 1 1 1 1 2 | AGC 2 0 2 2 2 0
ATA 4 10 4 4 4 11 | ACA 6 7 6 6 6 7 | Lys AAA 0 0 0 0 0 0 | Arg AGA 4 4 4 4 4 5
Met ATG 7 7 7 7 6 7 | ACG 2 2 2 2 2 2 | AAG 1 1 1 1 2 1 | AGG 1 1 1 1 1 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 5 6 5 5 5 7 | Ala GCT 3 4 3 3 3 4 | Asp GAT 3 2 3 3 4 3 | Gly GGT 3 2 3 3 3 2
GTC 4 3 4 4 3 3 | GCC 0 1 0 0 1 1 | GAC 2 4 2 2 2 3 | GGC 4 5 4 4 4 5
GTA 6 6 6 6 6 2 | GCA 5 4 5 5 5 4 | Glu GAA 3 3 3 3 3 3 | GGA 1 2 1 1 1 2
GTG 1 2 1 1 1 4 | GCG 1 1 1 1 1 1 | GAG 1 1 1 1 1 1 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 10 9 9 11 9 11 | Ser TCT 3 3 3 3 4 4 | Tyr TAT 7 6 6 6 6 6 | Cys TGT 0 0 0 0 0 0
TTC 2 3 3 1 1 0 | TCC 0 0 0 0 0 0 | TAC 2 4 4 4 5 5 | TGC 0 0 0 0 0 0
Leu TTA 4 5 5 5 8 7 | TCA 2 2 2 2 2 2 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 2 1 1 1 1 2 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 5 4 4 5 5 4 | Pro CCT 2 2 2 2 2 2 | His CAT 2 2 2 2 3 3 | Arg CGT 2 2 2 0 1 1
CTC 1 2 2 1 3 3 | CCC 0 0 0 0 1 1 | CAC 2 1 1 1 1 1 | CGC 0 0 0 2 0 0
CTA 3 3 3 3 2 2 | CCA 0 0 0 0 0 0 | Gln CAA 0 0 0 0 0 0 | CGA 0 0 0 0 0 0
CTG 0 0 0 0 0 0 | CCG 1 1 1 1 1 1 | CAG 2 2 2 2 2 2 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 5 4 4 6 7 7 | Thr ACT 1 1 1 1 2 2 | Asn AAT 4 4 4 5 5 5 | Ser AGT 2 2 2 2 2 2
ATC 1 0 0 0 0 0 | ACC 0 0 0 0 0 0 | AAC 2 2 2 1 2 1 | AGC 0 0 0 0 2 2
ATA 9 11 11 8 5 4 | ACA 7 7 7 6 6 6 | Lys AAA 1 0 0 0 0 0 | Arg AGA 4 5 5 5 4 4
Met ATG 7 7 7 7 6 7 | ACG 2 2 2 3 2 2 | AAG 1 1 1 1 2 1 | AGG 0 0 0 0 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 6 7 7 6 5 5 | Ala GCT 4 4 4 4 2 3 | Asp GAT 3 3 3 3 3 3 | Gly GGT 2 2 2 2 3 3
GTC 3 3 3 3 3 4 | GCC 1 1 1 1 1 0 | GAC 3 3 3 3 2 2 | GGC 5 5 5 5 4 4
GTA 5 2 2 6 6 6 | GCA 4 4 4 3 4 5 | Glu GAA 3 3 3 3 3 3 | GGA 2 2 2 2 1 1
GTG 2 4 4 2 1 1 | GCG 1 1 1 2 1 1 | GAG 1 1 1 1 1 1 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 10 11 9 11 9 9 | Ser TCT 3 3 3 4 4 3 | Tyr TAT 6 6 6 6 7 6 | Cys TGT 0 0 0 0 0 0
TTC 2 0 3 0 1 2 | TCC 0 1 0 0 0 0 | TAC 4 5 4 5 4 4 | TGC 0 0 0 0 0 0
Leu TTA 4 5 5 7 8 3 | TCA 2 2 2 2 2 2 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 2 2 1 2 1 2 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 1 1 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 5 4 4 4 5 5 | Pro CCT 2 2 2 2 2 2 | His CAT 2 3 2 3 3 2 | Arg CGT 2 1 2 1 1 2
CTC 1 4 2 3 3 2 | CCC 0 1 0 1 1 0 | CAC 1 1 1 1 1 1 | CGC 0 0 0 0 0 0
CTA 3 2 3 2 2 4 | CCA 0 0 0 0 0 0 | Gln CAA 0 0 0 0 0 0 | CGA 0 0 0 0 0 0
CTG 0 0 0 0 0 0 | CCG 1 1 1 1 1 1 | CAG 2 2 2 2 2 2 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 4 6 4 7 7 4 | Thr ACT 1 2 1 2 2 1 | Asn AAT 5 5 4 5 5 5 | Ser AGT 2 2 2 2 2 2
ATC 1 0 0 0 0 1 | ACC 0 0 0 0 0 0 | AAC 1 1 2 1 2 1 | AGC 0 1 0 2 2 0
ATA 9 6 11 4 5 9 | ACA 7 5 7 6 6 7 | Lys AAA 0 0 0 0 0 0 | Arg AGA 5 5 5 4 4 4
Met ATG 7 7 7 6 6 7 | ACG 2 2 2 2 2 2 | AAG 1 1 1 2 2 1 | AGG 0 1 0 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 7 5 7 5 5 7 | Ala GCT 4 4 4 3 2 4 | Asp GAT 4 3 3 3 3 3 | Gly GGT 2 3 2 3 3 2
GTC 2 2 3 3 3 4 | GCC 1 1 1 1 1 1 | GAC 2 2 3 2 2 3 | GGC 5 4 5 4 4 5
GTA 6 7 2 6 6 4 | GCA 3 5 4 5 4 4 | Glu GAA 3 3 3 3 3 3 | GGA 1 0 2 1 1 2
GTG 2 1 4 1 1 2 | GCG 2 1 1 1 1 1 | GAG 1 1 1 1 1 1 | GGG 1 1 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C54
position 1: T:0.25694 C:0.14583 A:0.31944 G:0.27778
position 2: T:0.43056 C:0.19444 A:0.24306 G:0.13194
position 3: T:0.41667 C:0.16667 A:0.28472 G:0.13194
Average T:0.36806 C:0.16898 A:0.28241 G:0.18056
#2: C37
position 1: T:0.22222 C:0.14583 A:0.31944 G:0.31250
position 2: T:0.45139 C:0.19444 A:0.22222 G:0.13194
position 3: T:0.39583 C:0.15972 A:0.29861 G:0.14583
Average T:0.35648 C:0.16667 A:0.28009 G:0.19676
#3: C50
position 1: T:0.26389 C:0.13889 A:0.30556 G:0.29167
position 2: T:0.43750 C:0.20139 A:0.22917 G:0.13194
position 3: T:0.42361 C:0.15972 A:0.27778 G:0.13889
Average T:0.37500 C:0.16667 A:0.27083 G:0.18750
#4: C58
position 1: T:0.25694 C:0.14583 A:0.31944 G:0.27778
position 2: T:0.43056 C:0.19444 A:0.24306 G:0.13194
position 3: T:0.40972 C:0.17361 A:0.28472 G:0.13194
Average T:0.36574 C:0.17130 A:0.28241 G:0.18056
#5: C73
position 1: T:0.22917 C:0.13889 A:0.31250 G:0.31944
position 2: T:0.45139 C:0.19444 A:0.22222 G:0.13194
position 3: T:0.40972 C:0.15972 A:0.29861 G:0.13194
Average T:0.36343 C:0.16435 A:0.27778 G:0.19444
#6: C6
position 1: T:0.23611 C:0.15972 A:0.31250 G:0.29167
position 2: T:0.45833 C:0.18750 A:0.21528 G:0.13889
position 3: T:0.39583 C:0.15278 A:0.29861 G:0.15278
Average T:0.36343 C:0.16667 A:0.27546 G:0.19444
#7: C86
position 1: T:0.26389 C:0.13889 A:0.30556 G:0.29167
position 2: T:0.43750 C:0.20139 A:0.22917 G:0.13194
position 3: T:0.42361 C:0.15972 A:0.27778 G:0.13889
Average T:0.37500 C:0.16667 A:0.27083 G:0.18750
#8: C60
position 1: T:0.26389 C:0.14583 A:0.31944 G:0.27083
position 2: T:0.43056 C:0.19444 A:0.24306 G:0.13194
position 3: T:0.40278 C:0.18056 A:0.28472 G:0.13194
Average T:0.36574 C:0.17361 A:0.28241 G:0.17824
#9: C5
position 1: T:0.23611 C:0.15972 A:0.31250 G:0.29167
position 2: T:0.45833 C:0.18750 A:0.21528 G:0.13889
position 3: T:0.39583 C:0.15278 A:0.29861 G:0.15278
Average T:0.36343 C:0.16667 A:0.27546 G:0.19444
#10: C27
position 1: T:0.25694 C:0.13889 A:0.30556 G:0.29861
position 2: T:0.43056 C:0.20833 A:0.22917 G:0.13194
position 3: T:0.41667 C:0.15972 A:0.27778 G:0.14583
Average T:0.36806 C:0.16898 A:0.27083 G:0.19213
#11: C66
position 1: T:0.26389 C:0.14583 A:0.31944 G:0.27083
position 2: T:0.43056 C:0.19444 A:0.24306 G:0.13194
position 3: T:0.40278 C:0.18056 A:0.28472 G:0.13194
Average T:0.36574 C:0.17361 A:0.28241 G:0.17824
#12: C67
position 1: T:0.26389 C:0.13889 A:0.30556 G:0.29167
position 2: T:0.43750 C:0.20139 A:0.22917 G:0.13194
position 3: T:0.42361 C:0.15972 A:0.27778 G:0.13889
Average T:0.37500 C:0.16667 A:0.27083 G:0.18750
#13: C12
position 1: T:0.26389 C:0.13889 A:0.30556 G:0.29167
position 2: T:0.43750 C:0.20139 A:0.22917 G:0.13194
position 3: T:0.42361 C:0.15972 A:0.27778 G:0.13889
Average T:0.37500 C:0.16667 A:0.27083 G:0.18750
#14: C71
position 1: T:0.25000 C:0.11806 A:0.31250 G:0.31944
position 2: T:0.45139 C:0.19444 A:0.22222 G:0.13194
position 3: T:0.36111 C:0.18056 A:0.31944 G:0.13889
Average T:0.35417 C:0.16435 A:0.28472 G:0.19676
#15: C46
position 1: T:0.26389 C:0.13889 A:0.30556 G:0.29167
position 2: T:0.43750 C:0.20139 A:0.22917 G:0.13194
position 3: T:0.42361 C:0.15972 A:0.27778 G:0.13889
Average T:0.37500 C:0.16667 A:0.27083 G:0.18750
#16: C68
position 1: T:0.26389 C:0.13889 A:0.30556 G:0.29167
position 2: T:0.43750 C:0.20139 A:0.22917 G:0.13194
position 3: T:0.42361 C:0.15972 A:0.27778 G:0.13889
Average T:0.37500 C:0.16667 A:0.27083 G:0.18750
#17: C69
position 1: T:0.26389 C:0.13889 A:0.29861 G:0.29861
position 2: T:0.42361 C:0.20833 A:0.23611 G:0.13194
position 3: T:0.42361 C:0.15972 A:0.27778 G:0.13889
Average T:0.37037 C:0.16898 A:0.27083 G:0.18981
#18: C17
position 1: T:0.23611 C:0.13194 A:0.31944 G:0.31250
position 2: T:0.45139 C:0.19444 A:0.22222 G:0.13194
position 3: T:0.38194 C:0.16667 A:0.30556 G:0.14583
Average T:0.35648 C:0.16435 A:0.28241 G:0.19676
#19: C11
position 1: T:0.22917 C:0.13889 A:0.31944 G:0.31250
position 2: T:0.45139 C:0.19444 A:0.22917 G:0.12500
position 3: T:0.40278 C:0.15278 A:0.30556 G:0.13889
Average T:0.36111 C:0.16204 A:0.28472 G:0.19213
#20: C18
position 1: T:0.23611 C:0.13194 A:0.31944 G:0.31250
position 2: T:0.45139 C:0.19444 A:0.22222 G:0.13194
position 3: T:0.38194 C:0.16667 A:0.30556 G:0.14583
Average T:0.35648 C:0.16435 A:0.28241 G:0.19676
#21: C20
position 1: T:0.23611 C:0.13194 A:0.31944 G:0.31250
position 2: T:0.45139 C:0.19444 A:0.22222 G:0.13194
position 3: T:0.38194 C:0.16667 A:0.30556 G:0.14583
Average T:0.35648 C:0.16435 A:0.28241 G:0.19676
#22: C76
position 1: T:0.23611 C:0.13194 A:0.31250 G:0.31944
position 2: T:0.45139 C:0.19444 A:0.22222 G:0.13194
position 3: T:0.40278 C:0.15278 A:0.29861 G:0.14583
Average T:0.36343 C:0.15972 A:0.27778 G:0.19907
#23: C57
position 1: T:0.25694 C:0.14583 A:0.31944 G:0.27778
position 2: T:0.43056 C:0.19444 A:0.24306 G:0.13194
position 3: T:0.40972 C:0.17361 A:0.28472 G:0.13194
Average T:0.36574 C:0.17130 A:0.28241 G:0.18056
#24: C92
position 1: T:0.26389 C:0.13889 A:0.30556 G:0.29167
position 2: T:0.43750 C:0.20139 A:0.22917 G:0.13194
position 3: T:0.42361 C:0.15972 A:0.27778 G:0.13889
Average T:0.37500 C:0.16667 A:0.27083 G:0.18750
#25: C81
position 1: T:0.23611 C:0.13194 A:0.31250 G:0.31944
position 2: T:0.45139 C:0.19444 A:0.22222 G:0.13194
position 3: T:0.40972 C:0.13889 A:0.29861 G:0.15278
Average T:0.36574 C:0.15509 A:0.27778 G:0.20139
#26: C26
position 1: T:0.25000 C:0.14583 A:0.30556 G:0.29861
position 2: T:0.43056 C:0.20833 A:0.22917 G:0.13194
position 3: T:0.41667 C:0.15972 A:0.27778 G:0.14583
Average T:0.36574 C:0.17130 A:0.27083 G:0.19213
#27: C78
position 1: T:0.23611 C:0.13194 A:0.31944 G:0.31250
position 2: T:0.45139 C:0.19444 A:0.22222 G:0.13194
position 3: T:0.38194 C:0.16667 A:0.30556 G:0.14583
Average T:0.35648 C:0.16435 A:0.28241 G:0.19676
#28: C91
position 1: T:0.26389 C:0.13889 A:0.30556 G:0.29167
position 2: T:0.42361 C:0.20833 A:0.23611 G:0.13194
position 3: T:0.42361 C:0.15972 A:0.27778 G:0.13889
Average T:0.37037 C:0.16898 A:0.27315 G:0.18750
#29: C64
position 1: T:0.25694 C:0.14583 A:0.31944 G:0.27778
position 2: T:0.43056 C:0.19444 A:0.24306 G:0.13194
position 3: T:0.41667 C:0.16667 A:0.28472 G:0.13194
Average T:0.36806 C:0.16898 A:0.28241 G:0.18056
#30: C30
position 1: T:0.22222 C:0.14583 A:0.31250 G:0.31944
position 2: T:0.45139 C:0.19444 A:0.22222 G:0.13194
position 3: T:0.39583 C:0.16667 A:0.29167 G:0.14583
Average T:0.35648 C:0.16898 A:0.27546 G:0.19907
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 306 | Ser S TCT 103 | Tyr Y TAT 178 | Cys C TGT 0
TTC 34 | TCC 2 | TAC 136 | TGC 0
Leu L TTA 181 | TCA 60 | *** * TAA 0 | *** * TGA 0
TTG 47 | TCG 0 | TAG 0 | Trp W TGG 30
------------------------------------------------------------------------------
Leu L CTT 134 | Pro P CCT 62 | His H CAT 77 | Arg R CGT 40
CTC 75 | CCC 17 | CAC 33 | CGC 3
CTA 73 | CCA 0 | Gln Q CAA 0 | CGA 0
CTG 0 | CCG 30 | CAG 60 | CGG 2
------------------------------------------------------------------------------
Ile I ATT 174 | Thr T ACT 47 | Asn N AAT 139 | Ser S AGT 60
ATC 6 | ACC 0 | AAC 44 | AGC 32
ATA 201 | ACA 190 | Lys K AAA 3 | Arg R AGA 130
Met M ATG 204 | ACG 61 | AAG 38 | AGG 21
------------------------------------------------------------------------------
Val V GTT 168 | Ala A GCT 99 | Asp D GAT 92 | Gly G GGT 78
GTC 93 | GCC 23 | GAC 72 | GGC 133
GTA 158 | GCA 129 | Glu E GAA 88 | GGA 39
GTG 52 | GCG 30 | GAG 30 | GGG 3
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.24931 C:0.14028 A:0.31250 G:0.29792
position 2: T:0.44120 C:0.19745 A:0.22917 G:0.13218
position 3: T:0.40671 C:0.16273 A:0.28981 G:0.14074
Average T:0.36574 C:0.16682 A:0.27716 G:0.19028
Model 1: NearlyNeutral (2 categories)
TREE # 1: (12, 3, 7, 15, (((((11, 8), (4, 23, 29)), 1), (17, 28)), 24), ((13, 16), (((18, 21, 27, 20), 22, 30, 2, ((6, 9), 19), 5, 14, 25), (26, 10)))); MP score: 128
lnL(ntime: 45 np: 48): -1276.614916 +0.000000
31..12 31..3 31..7 31..15 31..32 32..33 33..34 34..35 35..36 36..11 36..8 35..37 37..4 37..23 37..29 34..1 33..38 38..17 38..28 32..24 31..39 39..40 40..13 40..16 39..41 41..42 42..43 43..18 43..21 43..27 43..20 42..22 42..30 42..2 42..44 44..45 45..6 45..9 44..19 42..5 42..14 42..25 41..46 46..26 46..10
0.000004 0.000004 0.000004 0.000004 0.000004 0.015844 0.057236 0.000004 0.023952 0.000004 0.000004 0.007892 0.000004 0.000004 0.007885 0.000004 0.000004 0.007917 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.028580 0.264206 0.087518 0.000004 0.000004 0.000004 0.000004 0.066873 0.056777 0.056388 0.072381 0.125241 0.000004 0.000004 0.000004 0.043183 0.070406 0.059392 0.082128 0.000004 0.007918 3.824837 0.893420 0.079000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.141821
(12: 0.000004, 3: 0.000004, 7: 0.000004, 15: 0.000004, (((((11: 0.000004, 8: 0.000004): 0.023952, (4: 0.000004, 23: 0.000004, 29: 0.007885): 0.007892): 0.000004, 1: 0.000004): 0.057236, (17: 0.007917, 28: 0.000004): 0.000004): 0.015844, 24: 0.000004): 0.000004, ((13: 0.000004, 16: 0.000004): 0.000004, (((18: 0.000004, 21: 0.000004, 27: 0.000004, 20: 0.000004): 0.087518, 22: 0.066873, 30: 0.056777, 2: 0.056388, ((6: 0.000004, 9: 0.000004): 0.125241, 19: 0.000004): 0.072381, 5: 0.043183, 14: 0.070406, 25: 0.059392): 0.264206, (26: 0.000004, 10: 0.007918): 0.082128): 0.028580): 0.000004);
(C67: 0.000004, C50: 0.000004, C86: 0.000004, C46: 0.000004, (((((C66: 0.000004, C60: 0.000004): 0.023952, (C58: 0.000004, C57: 0.000004, C64: 0.007885): 0.007892): 0.000004, C54: 0.000004): 0.057236, (C69: 0.007917, C91: 0.000004): 0.000004): 0.015844, C92: 0.000004): 0.000004, ((C12: 0.000004, C68: 0.000004): 0.000004, (((C17: 0.000004, C20: 0.000004, C78: 0.000004, C18: 0.000004): 0.087518, C76: 0.066873, C30: 0.056777, C37: 0.056388, ((C6: 0.000004, C5: 0.000004): 0.125241, C11: 0.000004): 0.072381, C73: 0.043183, C71: 0.070406, C81: 0.059392): 0.264206, (C26: 0.000004, C27: 0.007918): 0.082128): 0.028580): 0.000004);
Detailed output identifying parameters
kappa (ts/tv) = 3.82484
MLEs of dN/dS (w) for site classes (K=2)
p: 0.89342 0.10658
w: 0.07900 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
31..3 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
31..7 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
31..15 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
31..32 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
32..33 0.016 318.5 113.5 0.1772 0.0024 0.0134 0.8 1.5
33..34 0.057 318.5 113.5 0.1772 0.0086 0.0485 2.7 5.5
34..35 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
35..36 0.024 318.5 113.5 0.1772 0.0036 0.0203 1.1 2.3
36..11 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
36..8 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
35..37 0.008 318.5 113.5 0.1772 0.0012 0.0067 0.4 0.8
37..4 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
37..23 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
37..29 0.008 318.5 113.5 0.1772 0.0012 0.0067 0.4 0.8
34..1 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
33..38 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
38..17 0.008 318.5 113.5 0.1772 0.0012 0.0067 0.4 0.8
38..28 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
32..24 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
31..39 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
39..40 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
40..13 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
40..16 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
39..41 0.029 318.5 113.5 0.1772 0.0043 0.0242 1.4 2.7
41..42 0.264 318.5 113.5 0.1772 0.0397 0.2239 12.6 25.4
42..43 0.088 318.5 113.5 0.1772 0.0131 0.0742 4.2 8.4
43..18 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
43..21 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
43..27 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
43..20 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
42..22 0.067 318.5 113.5 0.1772 0.0100 0.0567 3.2 6.4
42..30 0.057 318.5 113.5 0.1772 0.0085 0.0481 2.7 5.5
42..2 0.056 318.5 113.5 0.1772 0.0085 0.0478 2.7 5.4
42..44 0.072 318.5 113.5 0.1772 0.0109 0.0613 3.5 7.0
44..45 0.125 318.5 113.5 0.1772 0.0188 0.1062 6.0 12.0
45..6 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
45..9 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
44..19 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
42..5 0.043 318.5 113.5 0.1772 0.0065 0.0366 2.1 4.2
42..14 0.070 318.5 113.5 0.1772 0.0106 0.0597 3.4 6.8
42..25 0.059 318.5 113.5 0.1772 0.0089 0.0503 2.8 5.7
41..46 0.082 318.5 113.5 0.1772 0.0123 0.0696 3.9 7.9
46..26 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
46..10 0.008 318.5 113.5 0.1772 0.0012 0.0067 0.4 0.8
Time used: 2:37
Model 2: PositiveSelection (3 categories)
TREE # 1: (12, 3, 7, 15, (((((11, 8), (4, 23, 29)), 1), (17, 28)), 24), ((13, 16), (((18, 21, 27, 20), 22, 30, 2, ((6, 9), 19), 5, 14, 25), (26, 10)))); MP score: 128
check convergence..
lnL(ntime: 45 np: 50): -1276.614916 +0.000000
31..12 31..3 31..7 31..15 31..32 32..33 33..34 34..35 35..36 36..11 36..8 35..37 37..4 37..23 37..29 34..1 33..38 38..17 38..28 32..24 31..39 39..40 40..13 40..16 39..41 41..42 42..43 43..18 43..21 43..27 43..20 42..22 42..30 42..2 42..44 44..45 45..6 45..9 44..19 42..5 42..14 42..25 41..46 46..26 46..10
0.000004 0.000004 0.000004 0.000004 0.000004 0.015844 0.057236 0.000004 0.023952 0.000004 0.000004 0.007892 0.000004 0.000004 0.007885 0.000004 0.000004 0.007917 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.028580 0.264205 0.087518 0.000004 0.000004 0.000004 0.000004 0.066873 0.056777 0.056388 0.072381 0.125241 0.000004 0.000004 0.000004 0.043183 0.070406 0.059392 0.082128 0.000004 0.007918 3.824836 0.893419 0.045617 0.079000 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.141821
(12: 0.000004, 3: 0.000004, 7: 0.000004, 15: 0.000004, (((((11: 0.000004, 8: 0.000004): 0.023952, (4: 0.000004, 23: 0.000004, 29: 0.007885): 0.007892): 0.000004, 1: 0.000004): 0.057236, (17: 0.007917, 28: 0.000004): 0.000004): 0.015844, 24: 0.000004): 0.000004, ((13: 0.000004, 16: 0.000004): 0.000004, (((18: 0.000004, 21: 0.000004, 27: 0.000004, 20: 0.000004): 0.087518, 22: 0.066873, 30: 0.056777, 2: 0.056388, ((6: 0.000004, 9: 0.000004): 0.125241, 19: 0.000004): 0.072381, 5: 0.043183, 14: 0.070406, 25: 0.059392): 0.264205, (26: 0.000004, 10: 0.007918): 0.082128): 0.028580): 0.000004);
(C67: 0.000004, C50: 0.000004, C86: 0.000004, C46: 0.000004, (((((C66: 0.000004, C60: 0.000004): 0.023952, (C58: 0.000004, C57: 0.000004, C64: 0.007885): 0.007892): 0.000004, C54: 0.000004): 0.057236, (C69: 0.007917, C91: 0.000004): 0.000004): 0.015844, C92: 0.000004): 0.000004, ((C12: 0.000004, C68: 0.000004): 0.000004, (((C17: 0.000004, C20: 0.000004, C78: 0.000004, C18: 0.000004): 0.087518, C76: 0.066873, C30: 0.056777, C37: 0.056388, ((C6: 0.000004, C5: 0.000004): 0.125241, C11: 0.000004): 0.072381, C73: 0.043183, C71: 0.070406, C81: 0.059392): 0.264205, (C26: 0.000004, C27: 0.007918): 0.082128): 0.028580): 0.000004);
Detailed output identifying parameters
kappa (ts/tv) = 3.82484
MLEs of dN/dS (w) for site classes (K=3)
p: 0.89342 0.04562 0.06096
w: 0.07900 1.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
31..3 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
31..7 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
31..15 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
31..32 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
32..33 0.016 318.5 113.5 0.1772 0.0024 0.0134 0.8 1.5
33..34 0.057 318.5 113.5 0.1772 0.0086 0.0485 2.7 5.5
34..35 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
35..36 0.024 318.5 113.5 0.1772 0.0036 0.0203 1.1 2.3
36..11 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
36..8 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
35..37 0.008 318.5 113.5 0.1772 0.0012 0.0067 0.4 0.8
37..4 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
37..23 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
37..29 0.008 318.5 113.5 0.1772 0.0012 0.0067 0.4 0.8
34..1 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
33..38 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
38..17 0.008 318.5 113.5 0.1772 0.0012 0.0067 0.4 0.8
38..28 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
32..24 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
31..39 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
39..40 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
40..13 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
40..16 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
39..41 0.029 318.5 113.5 0.1772 0.0043 0.0242 1.4 2.7
41..42 0.264 318.5 113.5 0.1772 0.0397 0.2239 12.6 25.4
42..43 0.088 318.5 113.5 0.1772 0.0131 0.0742 4.2 8.4
43..18 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
43..21 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
43..27 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
43..20 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
42..22 0.067 318.5 113.5 0.1772 0.0100 0.0567 3.2 6.4
42..30 0.057 318.5 113.5 0.1772 0.0085 0.0481 2.7 5.5
42..2 0.056 318.5 113.5 0.1772 0.0085 0.0478 2.7 5.4
42..44 0.072 318.5 113.5 0.1772 0.0109 0.0613 3.5 7.0
44..45 0.125 318.5 113.5 0.1772 0.0188 0.1062 6.0 12.0
45..6 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
45..9 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
44..19 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
42..5 0.043 318.5 113.5 0.1772 0.0065 0.0366 2.1 4.2
42..14 0.070 318.5 113.5 0.1772 0.0106 0.0597 3.4 6.8
42..25 0.059 318.5 113.5 0.1772 0.0089 0.0503 2.8 5.7
41..46 0.082 318.5 113.5 0.1772 0.0123 0.0696 3.9 7.9
46..26 0.000 318.5 113.5 0.1772 0.0000 0.0000 0.0 0.0
46..10 0.008 318.5 113.5 0.1772 0.0012 0.0067 0.4 0.8
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C54)
Pr(w>1) post mean +- SE for w
35 A 0.663 1.905 +- 1.410
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 0.818 0.182 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.641 0.164 0.071 0.039 0.025 0.018 0.014 0.011 0.009 0.008
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.017
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.020 0.523
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.022 0.187 0.228
sum of density on p0-p1 = 1.000000
Time used: 6:13
Model 7: beta (10 categories)
TREE # 1: (12, 3, 7, 15, (((((11, 8), (4, 23, 29)), 1), (17, 28)), 24), ((13, 16), (((18, 21, 27, 20), 22, 30, 2, ((6, 9), 19), 5, 14, 25), (26, 10)))); MP score: 128
check convergence..
lnL(ntime: 45 np: 48): -1276.694245 +0.000000
31..12 31..3 31..7 31..15 31..32 32..33 33..34 34..35 35..36 36..11 36..8 35..37 37..4 37..23 37..29 34..1 33..38 38..17 38..28 32..24 31..39 39..40 40..13 40..16 39..41 41..42 42..43 43..18 43..21 43..27 43..20 42..22 42..30 42..2 42..44 44..45 45..6 45..9 44..19 42..5 42..14 42..25 41..46 46..26 46..10
0.000004 0.000004 0.000004 0.000004 0.000004 0.015771 0.056826 0.000004 0.023863 0.000004 0.000004 0.007862 0.000004 0.000004 0.007861 0.000004 0.000004 0.007887 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.029315 0.262939 0.087900 0.000004 0.000004 0.000004 0.000004 0.067162 0.056933 0.056639 0.072633 0.125127 0.000004 0.000004 0.000004 0.043360 0.070618 0.059634 0.080850 0.000137 0.007783 3.842114 0.250813 1.217747
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.141201
(12: 0.000004, 3: 0.000004, 7: 0.000004, 15: 0.000004, (((((11: 0.000004, 8: 0.000004): 0.023863, (4: 0.000004, 23: 0.000004, 29: 0.007861): 0.007862): 0.000004, 1: 0.000004): 0.056826, (17: 0.007887, 28: 0.000004): 0.000004): 0.015771, 24: 0.000004): 0.000004, ((13: 0.000004, 16: 0.000004): 0.000004, (((18: 0.000004, 21: 0.000004, 27: 0.000004, 20: 0.000004): 0.087900, 22: 0.067162, 30: 0.056933, 2: 0.056639, ((6: 0.000004, 9: 0.000004): 0.125127, 19: 0.000004): 0.072633, 5: 0.043360, 14: 0.070618, 25: 0.059634): 0.262939, (26: 0.000137, 10: 0.007783): 0.080850): 0.029315): 0.000004);
(C67: 0.000004, C50: 0.000004, C86: 0.000004, C46: 0.000004, (((((C66: 0.000004, C60: 0.000004): 0.023863, (C58: 0.000004, C57: 0.000004, C64: 0.007861): 0.007862): 0.000004, C54: 0.000004): 0.056826, (C69: 0.007887, C91: 0.000004): 0.000004): 0.015771, C92: 0.000004): 0.000004, ((C12: 0.000004, C68: 0.000004): 0.000004, (((C17: 0.000004, C20: 0.000004, C78: 0.000004, C18: 0.000004): 0.087900, C76: 0.067162, C30: 0.056933, C37: 0.056639, ((C6: 0.000004, C5: 0.000004): 0.125127, C11: 0.000004): 0.072633, C73: 0.043360, C71: 0.070618, C81: 0.059634): 0.262939, (C26: 0.000137, C27: 0.007783): 0.080850): 0.029315): 0.000004);
Detailed output identifying parameters
kappa (ts/tv) = 3.84211
Parameters in M7 (beta):
p = 0.25081 q = 1.21775
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00000 0.00040 0.00304 0.01166 0.03186 0.07141 0.14079 0.25463 0.43577 0.73273
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
31..3 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
31..7 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
31..15 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
31..32 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
32..33 0.016 318.5 113.5 0.1682 0.0023 0.0136 0.7 1.5
33..34 0.057 318.5 113.5 0.1682 0.0082 0.0490 2.6 5.6
34..35 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
35..36 0.024 318.5 113.5 0.1682 0.0035 0.0206 1.1 2.3
36..11 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
36..8 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
35..37 0.008 318.5 113.5 0.1682 0.0011 0.0068 0.4 0.8
37..4 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
37..23 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
37..29 0.008 318.5 113.5 0.1682 0.0011 0.0068 0.4 0.8
34..1 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
33..38 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
38..17 0.008 318.5 113.5 0.1682 0.0011 0.0068 0.4 0.8
38..28 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
32..24 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
31..39 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
39..40 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
40..13 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
40..16 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
39..41 0.029 318.5 113.5 0.1682 0.0043 0.0253 1.4 2.9
41..42 0.263 318.5 113.5 0.1682 0.0381 0.2266 12.1 25.7
42..43 0.088 318.5 113.5 0.1682 0.0127 0.0758 4.1 8.6
43..18 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
43..21 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
43..27 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
43..20 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
42..22 0.067 318.5 113.5 0.1682 0.0097 0.0579 3.1 6.6
42..30 0.057 318.5 113.5 0.1682 0.0083 0.0491 2.6 5.6
42..2 0.057 318.5 113.5 0.1682 0.0082 0.0488 2.6 5.5
42..44 0.073 318.5 113.5 0.1682 0.0105 0.0626 3.4 7.1
44..45 0.125 318.5 113.5 0.1682 0.0181 0.1078 5.8 12.2
45..6 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
45..9 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
44..19 0.000 318.5 113.5 0.1682 0.0000 0.0000 0.0 0.0
42..5 0.043 318.5 113.5 0.1682 0.0063 0.0374 2.0 4.2
42..14 0.071 318.5 113.5 0.1682 0.0102 0.0609 3.3 6.9
42..25 0.060 318.5 113.5 0.1682 0.0086 0.0514 2.8 5.8
41..46 0.081 318.5 113.5 0.1682 0.0117 0.0697 3.7 7.9
46..26 0.000 318.5 113.5 0.1682 0.0000 0.0001 0.0 0.0
46..10 0.008 318.5 113.5 0.1682 0.0011 0.0067 0.4 0.8
Time used: 20:22
Model 8: beta&w>1 (11 categories)
TREE # 1: (12, 3, 7, 15, (((((11, 8), (4, 23, 29)), 1), (17, 28)), 24), ((13, 16), (((18, 21, 27, 20), 22, 30, 2, ((6, 9), 19), 5, 14, 25), (26, 10)))); MP score: 128
lnL(ntime: 45 np: 50): -1275.939173 +0.000000
31..12 31..3 31..7 31..15 31..32 32..33 33..34 34..35 35..36 36..11 36..8 35..37 37..4 37..23 37..29 34..1 33..38 38..17 38..28 32..24 31..39 39..40 40..13 40..16 39..41 41..42 42..43 43..18 43..21 43..27 43..20 42..22 42..30 42..2 42..44 44..45 45..6 45..9 44..19 42..5 42..14 42..25 41..46 46..26 46..10
0.000004 0.000004 0.000004 0.000004 0.000004 0.015838 0.057038 0.000004 0.023961 0.000004 0.000004 0.007896 0.000004 0.000004 0.007892 0.000004 0.000004 0.007922 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.030346 0.265612 0.087638 0.000004 0.000004 0.000004 0.000004 0.066318 0.056553 0.055767 0.071666 0.124834 0.000004 0.000004 0.000004 0.043167 0.070330 0.059371 0.081019 0.000004 0.007952 3.845680 0.988601 0.387161 2.226130 2.360317
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 1.141225
(12: 0.000004, 3: 0.000004, 7: 0.000004, 15: 0.000004, (((((11: 0.000004, 8: 0.000004): 0.023961, (4: 0.000004, 23: 0.000004, 29: 0.007892): 0.007896): 0.000004, 1: 0.000004): 0.057038, (17: 0.007922, 28: 0.000004): 0.000004): 0.015838, 24: 0.000004): 0.000004, ((13: 0.000004, 16: 0.000004): 0.000004, (((18: 0.000004, 21: 0.000004, 27: 0.000004, 20: 0.000004): 0.087638, 22: 0.066318, 30: 0.056553, 2: 0.055767, ((6: 0.000004, 9: 0.000004): 0.124834, 19: 0.000004): 0.071666, 5: 0.043167, 14: 0.070330, 25: 0.059371): 0.265612, (26: 0.000004, 10: 0.007952): 0.081019): 0.030346): 0.000004);
(C67: 0.000004, C50: 0.000004, C86: 0.000004, C46: 0.000004, (((((C66: 0.000004, C60: 0.000004): 0.023961, (C58: 0.000004, C57: 0.000004, C64: 0.007892): 0.007896): 0.000004, C54: 0.000004): 0.057038, (C69: 0.007922, C91: 0.000004): 0.000004): 0.015838, C92: 0.000004): 0.000004, ((C12: 0.000004, C68: 0.000004): 0.000004, (((C17: 0.000004, C20: 0.000004, C78: 0.000004, C18: 0.000004): 0.087638, C76: 0.066318, C30: 0.056553, C37: 0.055767, ((C6: 0.000004, C5: 0.000004): 0.124834, C11: 0.000004): 0.071666, C73: 0.043167, C71: 0.070330, C81: 0.059371): 0.265612, (C26: 0.000004, C27: 0.007952): 0.081019): 0.030346): 0.000004);
Detailed output identifying parameters
kappa (ts/tv) = 3.84568
Parameters in M8 (beta&w>1):
p0 = 0.98860 p = 0.38716 q = 2.22613
(p1 = 0.01140) w = 2.36032
MLEs of dN/dS (w) for site classes (K=11)
p: 0.09886 0.09886 0.09886 0.09886 0.09886 0.09886 0.09886 0.09886 0.09886 0.09886 0.01140
w: 0.00017 0.00284 0.01068 0.02581 0.05050 0.08768 0.14177 0.22055 0.34117 0.56435 2.36032
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
31..3 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
31..7 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
31..15 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
31..32 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
32..33 0.016 318.5 113.5 0.1698 0.0023 0.0136 0.7 1.5
33..34 0.057 318.5 113.5 0.1698 0.0083 0.0490 2.7 5.6
34..35 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
35..36 0.024 318.5 113.5 0.1698 0.0035 0.0206 1.1 2.3
36..11 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
36..8 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
35..37 0.008 318.5 113.5 0.1698 0.0012 0.0068 0.4 0.8
37..4 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
37..23 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
37..29 0.008 318.5 113.5 0.1698 0.0012 0.0068 0.4 0.8
34..1 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
33..38 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
38..17 0.008 318.5 113.5 0.1698 0.0012 0.0068 0.4 0.8
38..28 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
32..24 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
31..39 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
39..40 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
40..13 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
40..16 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
39..41 0.030 318.5 113.5 0.1698 0.0044 0.0261 1.4 3.0
41..42 0.266 318.5 113.5 0.1698 0.0388 0.2282 12.3 25.9
42..43 0.088 318.5 113.5 0.1698 0.0128 0.0753 4.1 8.5
43..18 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
43..21 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
43..27 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
43..20 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
42..22 0.066 318.5 113.5 0.1698 0.0097 0.0570 3.1 6.5
42..30 0.057 318.5 113.5 0.1698 0.0083 0.0486 2.6 5.5
42..2 0.056 318.5 113.5 0.1698 0.0081 0.0479 2.6 5.4
42..44 0.072 318.5 113.5 0.1698 0.0105 0.0616 3.3 7.0
44..45 0.125 318.5 113.5 0.1698 0.0182 0.1073 5.8 12.2
45..6 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
45..9 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
44..19 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
42..5 0.043 318.5 113.5 0.1698 0.0063 0.0371 2.0 4.2
42..14 0.070 318.5 113.5 0.1698 0.0103 0.0604 3.3 6.9
42..25 0.059 318.5 113.5 0.1698 0.0087 0.0510 2.8 5.8
41..46 0.081 318.5 113.5 0.1698 0.0118 0.0696 3.8 7.9
46..26 0.000 318.5 113.5 0.1698 0.0000 0.0000 0.0 0.0
46..10 0.008 318.5 113.5 0.1698 0.0012 0.0068 0.4 0.8
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C54)
Pr(w>1) post mean +- SE for w
35 A 0.899 2.178
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C54)
Pr(w>1) post mean +- SE for w
35 A 0.904 1.793 +- 0.986
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.010 0.990
p : 0.755 0.242 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.029 0.104 0.144 0.142 0.130 0.130 0.146 0.174
ws: 0.776 0.146 0.040 0.016 0.008 0.005 0.003 0.002 0.002 0.001
Time used: 45:31
Model 1: NearlyNeutral -1276.614916 Model 2: PositiveSelection -1276.614916 Model 7: beta -1276.694245 Model 8: beta&w>1 -1275.939173 Model 2 vs 1 0 Model 8 vs 7 1.510144
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
