--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1338.58 -1370.58
2 -1341.67 -1373.90
--------------------------------------
TOTAL -1339.23 -1373.24
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.430260 0.030464 1.100222 1.769659 1.413697 1253.24 1317.29 1.000
r(A<->C){all} 0.082298 0.000688 0.035784 0.134966 0.079780 686.69 758.54 1.001
r(A<->G){all} 0.212450 0.001436 0.141421 0.286823 0.211054 650.74 707.80 1.000
r(A<->T){all} 0.082534 0.000382 0.047007 0.122275 0.081177 863.56 943.95 1.000
r(C<->G){all} 0.091271 0.000918 0.037808 0.153379 0.088679 700.57 712.37 1.001
r(C<->T){all} 0.448371 0.002319 0.357866 0.542564 0.447596 690.24 720.56 1.003
r(G<->T){all} 0.083077 0.000472 0.042816 0.124467 0.081067 785.73 802.57 1.000
pi(A){all} 0.274098 0.000628 0.228468 0.327184 0.274082 1037.70 1070.54 1.002
pi(C){all} 0.172945 0.000408 0.134305 0.213147 0.171826 903.76 932.21 1.000
pi(G){all} 0.210634 0.000509 0.167689 0.255441 0.209955 856.09 926.37 1.000
pi(T){all} 0.342324 0.000670 0.292673 0.394032 0.341782 879.98 990.72 1.001
alpha{1,2} 0.840545 0.176789 0.364134 1.610549 0.736521 1072.92 1090.66 1.000
alpha{3} 1.947673 0.651975 0.789721 3.606293 1.767701 1423.45 1431.74 1.000
pinvar{all} 0.085627 0.004293 0.000025 0.214208 0.072480 1078.53 1111.34 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -775.119182
Model 2: PositiveSelection -775.119182
Model 7: beta -771.886416
Model 8: beta&w>1 -771.842643
Model 2 vs 1 0
Model 8 vs 7 .087546
-- Starting log on Wed Nov 09 22:46:53 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Wed Nov 09 22:49:12 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Thu Nov 10 06:15:37 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result/gapped_alignment/codeml,A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 30 taxa and 255 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C67
Taxon 2 -> C66
Taxon 3 -> C11
Taxon 4 -> C69
Taxon 5 -> C68
Taxon 6 -> C16
Taxon 7 -> C19
Taxon 8 -> C20
Taxon 9 -> C78
Taxon 10 -> C25
Taxon 11 -> C58
Taxon 12 -> C27
Taxon 13 -> C60
Taxon 14 -> C49
Taxon 15 -> C98
Taxon 16 -> C38
Taxon 17 -> C61
Taxon 18 -> C15
Taxon 19 -> C14
Taxon 20 -> C73
Taxon 21 -> C88
Taxon 22 -> C46
Taxon 23 -> C48
Taxon 24 -> C97
Taxon 25 -> C32
Taxon 26 -> C23
Taxon 27 -> C100
Taxon 28 -> C5
Taxon 29 -> C35
Taxon 30 -> C41
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1668060939
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 1953075601
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 8427396056
Seed = 669931065
Swapseed = 1668060939
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 37 unique site patterns
Division 2 has 41 unique site patterns
Division 3 has 66 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -3563.863072 -- 82.122948
Chain 2 -- -3527.886953 -- 82.122948
Chain 3 -- -4205.515527 -- 82.122948
Chain 4 -- -3895.429341 -- 82.122948
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -4096.129638 -- 82.122948
Chain 2 -- -4070.818759 -- 82.122948
Chain 3 -- -4156.834188 -- 82.122948
Chain 4 -- -4210.291632 -- 82.122948
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-3563.863] (-3527.887) (-4205.516) (-3895.429) * [-4096.130] (-4070.819) (-4156.834) (-4210.292)
1000 -- (-1489.632) (-1483.474) (-1483.762) [-1439.221] * (-1447.552) [-1436.948] (-1616.279) (-1585.677) -- 0:16:39
2000 -- (-1385.024) (-1422.503) (-1423.419) [-1369.876] * (-1385.403) [-1379.439] (-1413.476) (-1442.064) -- 0:16:38
3000 -- [-1373.184] (-1386.432) (-1362.780) (-1363.754) * [-1382.678] (-1363.784) (-1357.725) (-1385.298) -- 0:16:37
4000 -- (-1374.677) (-1372.887) (-1359.706) [-1352.661] * (-1353.679) [-1347.486] (-1353.716) (-1374.529) -- 0:16:36
5000 -- (-1373.518) [-1363.945] (-1371.140) (-1352.458) * (-1350.737) (-1347.553) [-1356.144] (-1370.419) -- 0:16:35
Average standard deviation of split frequencies: 0.114631
6000 -- [-1355.754] (-1354.316) (-1373.614) (-1356.553) * (-1378.408) (-1350.389) [-1350.739] (-1358.942) -- 0:16:34
7000 -- (-1355.182) [-1358.992] (-1371.920) (-1354.971) * (-1373.462) [-1350.209] (-1362.964) (-1387.331) -- 0:16:33
8000 -- (-1365.198) [-1356.835] (-1363.727) (-1359.065) * [-1358.737] (-1383.354) (-1352.004) (-1380.008) -- 0:16:32
9000 -- [-1350.734] (-1366.683) (-1363.025) (-1351.277) * (-1380.097) (-1389.824) [-1348.196] (-1372.583) -- 0:16:31
10000 -- (-1363.361) [-1365.199] (-1350.588) (-1351.302) * [-1352.224] (-1395.379) (-1361.036) (-1368.117) -- 0:18:09
Average standard deviation of split frequencies: 0.091402
11000 -- [-1347.988] (-1358.281) (-1371.850) (-1348.885) * (-1355.408) (-1362.856) [-1344.984] (-1368.183) -- 0:17:58
12000 -- (-1373.060) [-1374.034] (-1370.143) (-1350.657) * [-1353.712] (-1378.587) (-1345.653) (-1367.816) -- 0:17:50
13000 -- [-1359.789] (-1353.416) (-1369.647) (-1374.318) * (-1361.737) (-1348.267) [-1351.417] (-1368.060) -- 0:17:42
14000 -- [-1356.201] (-1357.237) (-1380.985) (-1367.943) * (-1361.758) (-1357.949) [-1358.019] (-1362.932) -- 0:17:36
15000 -- (-1362.810) [-1349.911] (-1362.969) (-1375.890) * (-1369.336) (-1349.777) [-1349.716] (-1349.150) -- 0:17:30
Average standard deviation of split frequencies: 0.060044
16000 -- [-1348.594] (-1365.938) (-1356.509) (-1380.670) * (-1352.631) [-1352.032] (-1375.514) (-1362.075) -- 0:17:25
17000 -- (-1356.091) [-1354.350] (-1353.239) (-1380.115) * [-1339.873] (-1355.624) (-1357.168) (-1367.120) -- 0:17:20
18000 -- (-1363.794) [-1351.044] (-1354.011) (-1357.104) * [-1357.444] (-1370.557) (-1350.223) (-1353.261) -- 0:17:16
19000 -- (-1355.807) [-1350.587] (-1371.327) (-1348.404) * (-1367.707) (-1357.406) (-1366.271) [-1348.611] -- 0:18:04
20000 -- (-1343.808) [-1349.475] (-1365.539) (-1373.914) * (-1377.310) (-1361.064) (-1362.961) [-1351.895] -- 0:17:58
Average standard deviation of split frequencies: 0.055224
21000 -- (-1361.562) [-1356.561] (-1363.319) (-1370.051) * (-1378.242) [-1345.479] (-1373.307) (-1353.538) -- 0:17:52
22000 -- (-1363.169) [-1355.757] (-1358.316) (-1378.127) * (-1373.079) [-1351.837] (-1363.122) (-1362.200) -- 0:17:46
23000 -- (-1364.765) [-1343.657] (-1363.666) (-1373.909) * (-1353.172) [-1372.460] (-1361.657) (-1369.299) -- 0:17:41
24000 -- (-1353.119) (-1352.849) [-1342.533] (-1380.955) * (-1355.929) [-1368.266] (-1353.743) (-1372.990) -- 0:17:37
25000 -- (-1365.083) (-1349.752) (-1374.574) [-1366.591] * (-1350.965) (-1353.142) [-1358.716] (-1356.515) -- 0:17:33
Average standard deviation of split frequencies: 0.048276
26000 -- (-1362.549) [-1355.940] (-1338.697) (-1372.844) * (-1342.527) (-1358.504) (-1365.711) [-1350.386] -- 0:17:28
27000 -- (-1351.294) (-1352.360) [-1347.805] (-1361.852) * (-1359.363) [-1343.091] (-1359.986) (-1369.092) -- 0:17:25
28000 -- (-1346.322) [-1351.105] (-1368.731) (-1362.218) * (-1373.491) [-1362.301] (-1360.272) (-1359.789) -- 0:17:56
29000 -- (-1367.977) [-1349.281] (-1339.346) (-1364.261) * (-1361.568) (-1373.455) [-1360.575] (-1353.289) -- 0:17:51
30000 -- (-1367.825) (-1355.930) (-1368.212) [-1357.344] * (-1367.457) (-1378.430) [-1346.785] (-1355.533) -- 0:17:47
Average standard deviation of split frequencies: 0.043121
31000 -- (-1361.458) [-1347.960] (-1377.106) (-1363.764) * (-1375.794) [-1348.368] (-1354.504) (-1372.374) -- 0:17:42
32000 -- (-1371.020) [-1358.702] (-1371.769) (-1356.933) * (-1355.537) [-1356.757] (-1368.330) (-1370.386) -- 0:17:38
33000 -- (-1361.752) [-1366.920] (-1366.137) (-1382.293) * [-1362.833] (-1350.472) (-1368.810) (-1373.694) -- 0:17:34
34000 -- (-1369.982) [-1355.179] (-1359.156) (-1360.694) * (-1356.046) [-1358.248] (-1363.648) (-1382.969) -- 0:17:31
35000 -- (-1357.031) (-1350.812) [-1349.765] (-1352.669) * [-1370.096] (-1364.844) (-1363.477) (-1355.572) -- 0:17:27
Average standard deviation of split frequencies: 0.034522
36000 -- (-1354.063) [-1359.038] (-1360.396) (-1356.013) * [-1344.255] (-1362.656) (-1365.929) (-1358.440) -- 0:17:51
37000 -- (-1361.941) (-1354.531) [-1368.707] (-1365.673) * (-1348.064) (-1367.900) (-1342.895) [-1350.719] -- 0:17:47
38000 -- (-1356.922) [-1358.727] (-1364.291) (-1359.151) * (-1377.298) (-1366.243) (-1349.768) [-1361.489] -- 0:17:43
39000 -- (-1357.723) [-1350.699] (-1360.167) (-1372.117) * (-1372.654) (-1360.852) [-1356.097] (-1363.631) -- 0:17:39
40000 -- (-1358.832) (-1372.585) (-1372.399) [-1357.311] * (-1356.608) (-1355.702) (-1369.663) [-1350.537] -- 0:17:36
Average standard deviation of split frequencies: 0.035448
41000 -- (-1367.428) [-1346.976] (-1360.535) (-1370.802) * (-1365.445) (-1366.535) [-1358.632] (-1358.409) -- 0:17:32
42000 -- (-1375.498) (-1368.679) [-1353.003] (-1371.895) * (-1363.932) (-1358.965) (-1349.286) [-1349.885] -- 0:17:29
43000 -- (-1372.445) [-1355.876] (-1354.151) (-1366.598) * (-1365.425) (-1355.526) [-1356.330] (-1369.221) -- 0:17:26
44000 -- (-1363.634) (-1349.259) (-1363.662) [-1346.424] * (-1360.224) (-1357.366) [-1350.545] (-1359.149) -- 0:17:44
45000 -- [-1356.581] (-1354.611) (-1359.860) (-1358.273) * (-1363.975) (-1357.752) (-1361.320) [-1351.666] -- 0:17:41
Average standard deviation of split frequencies: 0.025226
46000 -- (-1362.187) (-1366.398) (-1387.555) [-1348.224] * (-1354.886) (-1357.527) (-1358.266) [-1345.984] -- 0:17:37
47000 -- (-1361.916) (-1352.690) [-1357.153] (-1355.835) * (-1348.472) (-1364.643) (-1356.003) [-1345.445] -- 0:17:34
48000 -- (-1372.524) (-1353.039) (-1374.783) [-1368.020] * (-1353.629) (-1354.584) [-1354.430] (-1373.738) -- 0:17:31
49000 -- (-1371.679) (-1361.733) [-1353.092] (-1363.240) * [-1351.543] (-1360.318) (-1362.399) (-1382.496) -- 0:17:28
50000 -- (-1366.619) (-1384.577) [-1351.677] (-1350.452) * (-1346.284) (-1372.408) [-1335.976] (-1360.965) -- 0:17:25
Average standard deviation of split frequencies: 0.026423
51000 -- (-1369.758) [-1350.301] (-1350.415) (-1370.790) * (-1364.357) (-1369.698) (-1363.352) [-1350.580] -- 0:17:22
52000 -- (-1365.062) (-1348.693) (-1354.398) [-1374.367] * [-1358.146] (-1366.493) (-1373.913) (-1365.100) -- 0:17:19
53000 -- (-1376.943) (-1356.483) [-1364.108] (-1361.162) * (-1380.110) [-1354.848] (-1367.741) (-1357.551) -- 0:17:34
54000 -- (-1360.570) [-1344.891] (-1361.217) (-1387.082) * (-1363.649) (-1366.918) (-1350.840) [-1363.928] -- 0:17:31
55000 -- [-1357.661] (-1348.269) (-1358.378) (-1344.576) * (-1364.672) (-1366.838) (-1346.576) [-1345.911] -- 0:17:28
Average standard deviation of split frequencies: 0.026238
56000 -- [-1339.146] (-1369.119) (-1346.894) (-1362.788) * [-1350.723] (-1363.723) (-1349.942) (-1361.706) -- 0:17:25
57000 -- [-1348.602] (-1370.350) (-1346.915) (-1356.493) * (-1362.404) (-1365.299) [-1347.935] (-1382.347) -- 0:17:22
58000 -- (-1349.600) (-1368.683) [-1353.646] (-1343.997) * (-1366.157) (-1360.757) [-1347.126] (-1374.198) -- 0:17:19
59000 -- (-1348.250) (-1372.709) (-1361.415) [-1348.168] * [-1354.404] (-1358.639) (-1349.723) (-1364.425) -- 0:17:16
60000 -- (-1352.978) (-1342.373) (-1357.288) [-1344.105] * (-1362.606) (-1364.076) (-1368.664) [-1352.549] -- 0:17:14
Average standard deviation of split frequencies: 0.026685
61000 -- (-1356.916) [-1353.500] (-1364.123) (-1348.784) * (-1359.829) (-1349.112) (-1370.490) [-1350.230] -- 0:17:11
62000 -- (-1352.272) (-1368.774) (-1386.460) [-1351.926] * (-1349.567) [-1351.942] (-1375.554) (-1364.628) -- 0:17:08
63000 -- (-1356.816) (-1377.434) [-1370.695] (-1385.332) * [-1358.136] (-1362.584) (-1366.605) (-1357.409) -- 0:17:21
64000 -- [-1353.790] (-1395.612) (-1364.688) (-1344.138) * (-1359.584) [-1352.989] (-1367.493) (-1352.848) -- 0:17:18
65000 -- (-1356.835) (-1383.723) [-1358.512] (-1351.733) * [-1348.538] (-1362.821) (-1366.992) (-1358.028) -- 0:17:15
Average standard deviation of split frequencies: 0.024341
66000 -- (-1349.903) (-1363.020) (-1359.369) [-1348.725] * (-1347.054) (-1374.739) (-1370.406) [-1360.380] -- 0:17:13
67000 -- [-1342.915] (-1351.871) (-1344.180) (-1361.177) * (-1370.165) (-1365.025) [-1373.274] (-1351.506) -- 0:17:10
68000 -- (-1363.866) (-1380.636) (-1365.474) [-1358.257] * (-1358.551) [-1351.510] (-1361.025) (-1359.186) -- 0:17:07
69000 -- (-1363.458) (-1355.917) (-1376.796) [-1357.267] * (-1368.192) (-1367.445) (-1360.563) [-1349.770] -- 0:17:05
70000 -- [-1354.773] (-1361.118) (-1373.710) (-1380.786) * (-1363.545) (-1366.018) [-1350.352] (-1351.917) -- 0:17:03
Average standard deviation of split frequencies: 0.023260
71000 -- (-1356.723) (-1366.332) [-1344.184] (-1364.264) * (-1359.553) (-1365.493) (-1358.968) [-1341.078] -- 0:17:00
72000 -- (-1362.031) [-1360.022] (-1369.371) (-1354.869) * (-1364.929) (-1366.018) [-1343.175] (-1357.841) -- 0:16:58
73000 -- [-1347.063] (-1363.889) (-1366.308) (-1349.339) * (-1373.967) (-1357.002) [-1365.557] (-1356.325) -- 0:16:55
74000 -- (-1348.361) [-1353.937] (-1370.533) (-1368.182) * [-1346.771] (-1365.336) (-1373.460) (-1358.696) -- 0:17:06
75000 -- [-1353.094] (-1362.010) (-1355.236) (-1356.900) * [-1356.358] (-1359.243) (-1365.885) (-1358.815) -- 0:17:03
Average standard deviation of split frequencies: 0.022826
76000 -- (-1350.163) (-1357.973) [-1352.423] (-1351.126) * (-1365.816) [-1345.838] (-1361.174) (-1363.255) -- 0:17:01
77000 -- (-1361.991) (-1346.815) (-1372.988) [-1346.134] * (-1359.807) (-1344.068) [-1347.253] (-1351.094) -- 0:16:58
78000 -- (-1376.302) (-1354.853) (-1386.035) [-1350.239] * (-1378.209) (-1362.417) (-1345.935) [-1344.395] -- 0:16:56
79000 -- (-1347.485) [-1347.883] (-1372.079) (-1358.768) * (-1377.530) (-1357.664) [-1350.288] (-1347.611) -- 0:16:54
80000 -- (-1368.271) (-1357.534) [-1348.670] (-1355.720) * [-1351.540] (-1360.476) (-1355.681) (-1349.301) -- 0:16:52
Average standard deviation of split frequencies: 0.020989
81000 -- (-1349.263) (-1376.100) [-1349.937] (-1371.744) * (-1361.751) (-1353.310) (-1345.892) [-1358.298] -- 0:16:49
82000 -- (-1359.777) (-1376.819) [-1344.856] (-1352.074) * (-1355.594) (-1368.779) (-1373.817) [-1356.091] -- 0:16:47
83000 -- (-1360.691) (-1371.050) [-1345.984] (-1369.296) * [-1360.817] (-1349.636) (-1370.206) (-1360.192) -- 0:16:56
84000 -- (-1372.335) [-1348.275] (-1352.321) (-1367.313) * [-1360.994] (-1355.586) (-1360.504) (-1364.248) -- 0:16:54
85000 -- (-1361.205) (-1372.957) [-1348.416] (-1373.407) * (-1350.791) [-1345.408] (-1351.813) (-1362.533) -- 0:16:51
Average standard deviation of split frequencies: 0.021393
86000 -- (-1345.484) (-1350.946) (-1374.081) [-1352.993] * [-1355.300] (-1348.490) (-1353.348) (-1361.414) -- 0:16:49
87000 -- (-1365.054) (-1374.352) [-1355.264] (-1357.001) * (-1365.906) [-1357.620] (-1371.866) (-1360.956) -- 0:16:47
88000 -- (-1347.097) (-1364.802) [-1352.079] (-1358.605) * (-1354.700) (-1370.782) [-1352.957] (-1371.379) -- 0:16:45
89000 -- [-1342.891] (-1367.017) (-1356.726) (-1374.582) * [-1358.387] (-1362.232) (-1359.692) (-1371.895) -- 0:16:43
90000 -- (-1343.280) [-1352.234] (-1359.841) (-1362.760) * (-1368.694) (-1348.984) (-1353.452) [-1364.630] -- 0:16:41
Average standard deviation of split frequencies: 0.022097
91000 -- (-1366.092) (-1351.179) [-1370.574] (-1373.292) * (-1371.780) (-1354.841) [-1354.095] (-1381.102) -- 0:16:38
92000 -- (-1346.453) (-1364.667) [-1353.737] (-1364.252) * (-1363.769) [-1357.483] (-1352.643) (-1373.764) -- 0:16:46
93000 -- (-1370.758) (-1376.633) [-1350.384] (-1372.117) * (-1363.615) [-1347.585] (-1369.339) (-1351.381) -- 0:16:44
94000 -- (-1357.080) (-1357.671) (-1365.127) [-1359.758] * (-1367.490) (-1352.924) (-1368.304) [-1350.105] -- 0:16:42
95000 -- (-1352.047) (-1350.632) [-1351.097] (-1368.073) * (-1373.191) (-1344.609) (-1374.976) [-1354.342] -- 0:16:40
Average standard deviation of split frequencies: 0.021458
96000 -- [-1368.668] (-1363.996) (-1375.200) (-1359.360) * (-1350.966) (-1355.865) [-1355.419] (-1359.453) -- 0:16:38
97000 -- (-1360.304) [-1342.033] (-1361.396) (-1361.558) * (-1345.376) (-1379.278) (-1360.047) [-1357.164] -- 0:16:36
98000 -- (-1353.955) (-1349.986) (-1380.323) [-1361.316] * (-1367.934) (-1355.789) [-1351.520] (-1375.643) -- 0:16:34
99000 -- (-1378.596) (-1349.432) (-1350.985) [-1357.483] * (-1365.899) (-1370.169) (-1346.517) [-1367.395] -- 0:16:32
100000 -- (-1359.625) (-1365.568) (-1361.907) [-1354.285] * (-1374.595) [-1352.942] (-1367.983) (-1366.934) -- 0:16:39
Average standard deviation of split frequencies: 0.022439
101000 -- (-1370.412) (-1373.264) (-1351.315) [-1357.144] * (-1358.963) (-1353.842) [-1355.781] (-1372.005) -- 0:16:36
102000 -- (-1377.426) [-1348.872] (-1357.117) (-1352.983) * (-1369.050) (-1370.511) (-1353.196) [-1358.253] -- 0:16:34
103000 -- (-1370.419) (-1360.508) [-1369.840] (-1355.316) * (-1361.721) [-1364.546] (-1359.149) (-1350.807) -- 0:16:32
104000 -- (-1348.318) [-1356.156] (-1360.880) (-1366.366) * (-1359.135) (-1360.117) (-1360.792) [-1342.522] -- 0:16:30
105000 -- (-1357.077) [-1351.396] (-1358.753) (-1345.367) * (-1353.604) (-1367.539) (-1350.792) [-1350.369] -- 0:16:28
Average standard deviation of split frequencies: 0.021465
106000 -- [-1352.826] (-1350.094) (-1360.707) (-1340.526) * [-1343.893] (-1365.116) (-1364.174) (-1356.108) -- 0:16:26
107000 -- (-1352.083) [-1344.133] (-1368.968) (-1352.234) * (-1361.340) (-1364.346) [-1356.173] (-1354.901) -- 0:16:24
108000 -- (-1369.880) [-1348.908] (-1372.074) (-1351.256) * (-1357.553) [-1353.570] (-1352.844) (-1352.511) -- 0:16:31
109000 -- (-1361.751) (-1356.506) [-1349.942] (-1381.165) * (-1358.141) (-1360.568) [-1361.686] (-1343.401) -- 0:16:29
110000 -- (-1359.933) (-1363.145) [-1352.874] (-1367.312) * [-1366.736] (-1361.266) (-1356.648) (-1366.965) -- 0:16:27
Average standard deviation of split frequencies: 0.022618
111000 -- (-1382.914) (-1374.027) [-1354.265] (-1349.223) * (-1354.333) (-1362.621) (-1362.353) [-1342.666] -- 0:16:25
112000 -- (-1359.672) (-1370.343) (-1356.528) [-1342.068] * [-1349.843] (-1369.848) (-1361.671) (-1353.725) -- 0:16:23
113000 -- [-1354.040] (-1376.367) (-1369.138) (-1359.293) * (-1356.605) (-1349.008) (-1367.882) [-1350.456] -- 0:16:21
114000 -- (-1357.506) (-1360.568) [-1352.772] (-1375.510) * (-1358.426) [-1354.081] (-1364.292) (-1355.158) -- 0:16:19
115000 -- [-1341.108] (-1353.754) (-1361.213) (-1386.760) * (-1366.865) (-1357.425) [-1348.643] (-1355.106) -- 0:16:17
Average standard deviation of split frequencies: 0.020376
116000 -- [-1355.333] (-1357.568) (-1364.514) (-1341.813) * (-1364.740) (-1348.631) (-1352.352) [-1356.021] -- 0:16:15
117000 -- (-1361.870) [-1353.651] (-1366.709) (-1352.504) * (-1381.943) (-1345.402) [-1353.835] (-1353.531) -- 0:16:13
118000 -- (-1356.319) [-1344.423] (-1356.781) (-1376.634) * (-1373.609) (-1356.273) [-1348.798] (-1355.636) -- 0:16:19
119000 -- (-1369.251) [-1359.275] (-1366.819) (-1385.910) * (-1366.759) [-1348.917] (-1367.507) (-1361.818) -- 0:16:17
120000 -- (-1384.881) (-1353.864) (-1376.351) [-1355.828] * (-1349.615) (-1357.229) (-1359.227) [-1364.549] -- 0:16:15
Average standard deviation of split frequencies: 0.021345
121000 -- (-1349.881) [-1361.515] (-1352.592) (-1382.824) * (-1353.027) [-1351.128] (-1365.362) (-1359.418) -- 0:16:13
122000 -- [-1346.045] (-1371.719) (-1357.722) (-1367.032) * [-1341.674] (-1365.743) (-1350.714) (-1352.468) -- 0:16:11
123000 -- [-1341.800] (-1353.274) (-1356.073) (-1366.436) * (-1354.999) (-1364.388) [-1354.711] (-1357.598) -- 0:16:09
124000 -- (-1355.805) (-1365.826) [-1356.655] (-1358.417) * (-1366.680) (-1350.015) (-1347.462) [-1349.369] -- 0:16:07
125000 -- (-1382.690) (-1363.160) (-1355.678) [-1340.254] * (-1356.765) (-1357.711) (-1369.983) [-1348.766] -- 0:16:06
Average standard deviation of split frequencies: 0.018759
126000 -- [-1369.100] (-1358.605) (-1366.968) (-1349.954) * (-1352.688) (-1366.886) (-1372.941) [-1341.292] -- 0:16:04
127000 -- (-1376.177) [-1348.448] (-1358.101) (-1368.826) * (-1350.700) (-1360.975) (-1370.379) [-1348.022] -- 0:16:09
128000 -- (-1363.031) (-1357.154) [-1353.410] (-1388.189) * (-1362.430) [-1359.566] (-1369.421) (-1353.486) -- 0:16:07
129000 -- (-1360.039) (-1357.562) (-1365.143) [-1351.640] * (-1359.003) (-1371.752) (-1380.018) [-1352.660] -- 0:16:05
130000 -- (-1360.674) (-1352.776) (-1367.384) [-1342.373] * (-1369.096) (-1359.823) (-1352.999) [-1354.419] -- 0:16:03
Average standard deviation of split frequencies: 0.018193
131000 -- (-1355.258) (-1365.960) [-1354.340] (-1346.453) * (-1359.249) (-1359.665) (-1377.729) [-1359.171] -- 0:16:01
132000 -- (-1357.582) (-1369.854) [-1361.675] (-1355.160) * (-1349.400) [-1362.290] (-1357.022) (-1367.246) -- 0:16:00
133000 -- [-1350.782] (-1368.472) (-1355.231) (-1352.824) * (-1354.526) (-1386.516) [-1357.892] (-1375.660) -- 0:15:58
134000 -- [-1342.553] (-1363.684) (-1377.122) (-1363.022) * (-1351.200) (-1385.485) [-1357.023] (-1378.892) -- 0:15:56
135000 -- (-1365.765) (-1370.354) [-1364.717] (-1364.457) * (-1361.299) (-1356.122) [-1367.014] (-1370.623) -- 0:15:54
Average standard deviation of split frequencies: 0.018159
136000 -- (-1365.349) (-1372.987) (-1351.738) [-1364.745] * (-1364.157) [-1349.949] (-1371.028) (-1361.046) -- 0:15:59
137000 -- (-1355.187) (-1375.987) (-1344.518) [-1345.423] * (-1361.054) (-1359.453) (-1375.506) [-1356.833] -- 0:15:57
138000 -- (-1354.796) (-1362.495) (-1355.474) [-1344.876] * (-1367.645) (-1357.373) (-1357.228) [-1345.612] -- 0:15:55
139000 -- (-1367.100) (-1371.289) [-1351.090] (-1357.559) * (-1362.676) (-1359.934) [-1367.080] (-1363.394) -- 0:15:53
140000 -- (-1369.974) (-1345.993) [-1344.280] (-1354.801) * (-1360.821) (-1358.811) [-1344.293] (-1351.272) -- 0:15:52
Average standard deviation of split frequencies: 0.018629
141000 -- (-1375.730) (-1382.363) [-1355.210] (-1339.144) * (-1372.989) (-1357.137) (-1364.389) [-1346.987] -- 0:15:50
142000 -- (-1367.154) [-1346.852] (-1356.898) (-1342.033) * (-1363.055) (-1379.558) (-1355.332) [-1346.173] -- 0:15:48
143000 -- (-1359.221) [-1356.777] (-1371.371) (-1354.364) * (-1354.432) (-1359.026) (-1380.445) [-1346.551] -- 0:15:46
144000 -- [-1355.589] (-1352.966) (-1348.932) (-1380.380) * (-1376.490) (-1366.475) (-1352.410) [-1353.618] -- 0:15:45
145000 -- (-1364.992) (-1366.196) [-1355.224] (-1356.584) * (-1373.514) [-1357.209] (-1354.923) (-1372.159) -- 0:15:43
Average standard deviation of split frequencies: 0.016518
146000 -- [-1356.259] (-1379.927) (-1356.087) (-1364.800) * (-1365.681) [-1349.581] (-1371.302) (-1373.559) -- 0:15:47
147000 -- [-1357.699] (-1370.043) (-1367.572) (-1377.493) * (-1370.027) (-1365.758) [-1351.901] (-1364.000) -- 0:15:45
148000 -- (-1352.114) (-1375.412) [-1348.533] (-1363.758) * (-1358.526) (-1364.157) [-1342.938] (-1366.592) -- 0:15:44
149000 -- (-1372.279) (-1355.990) (-1358.145) [-1360.830] * (-1367.661) (-1355.866) [-1358.284] (-1378.743) -- 0:15:42
150000 -- [-1373.699] (-1360.149) (-1363.606) (-1356.435) * (-1373.542) [-1359.214] (-1352.501) (-1358.859) -- 0:15:40
Average standard deviation of split frequencies: 0.017367
151000 -- (-1356.560) (-1364.704) [-1359.511] (-1359.306) * (-1381.973) [-1352.741] (-1374.197) (-1353.426) -- 0:15:38
152000 -- (-1369.518) (-1359.173) [-1358.661] (-1361.522) * [-1360.364] (-1350.215) (-1362.178) (-1363.492) -- 0:15:37
153000 -- [-1360.874] (-1370.522) (-1358.368) (-1359.941) * (-1402.243) (-1358.066) [-1350.775] (-1363.593) -- 0:15:35
154000 -- (-1369.761) (-1358.656) [-1346.623] (-1363.887) * (-1360.174) [-1347.108] (-1349.694) (-1359.000) -- 0:15:33
155000 -- (-1359.783) [-1364.133] (-1351.591) (-1386.265) * (-1358.558) (-1354.831) [-1359.278] (-1366.469) -- 0:15:32
Average standard deviation of split frequencies: 0.018131
156000 -- [-1355.106] (-1355.918) (-1355.978) (-1375.751) * (-1366.935) (-1365.022) (-1352.507) [-1357.548] -- 0:15:35
157000 -- (-1361.973) (-1360.751) [-1359.169] (-1353.190) * (-1358.016) [-1356.117] (-1351.493) (-1375.969) -- 0:15:34
158000 -- (-1363.180) (-1362.199) (-1354.486) [-1356.371] * (-1356.578) [-1349.030] (-1354.709) (-1356.626) -- 0:15:32
159000 -- (-1358.768) (-1376.434) [-1353.377] (-1355.385) * (-1358.015) (-1359.495) [-1355.417] (-1352.880) -- 0:15:30
160000 -- (-1350.711) (-1384.989) (-1348.654) [-1354.707] * (-1371.219) (-1365.228) [-1356.202] (-1361.741) -- 0:15:29
Average standard deviation of split frequencies: 0.018381
161000 -- (-1352.930) [-1360.895] (-1360.173) (-1368.150) * (-1354.964) (-1367.200) [-1367.819] (-1355.585) -- 0:15:27
162000 -- (-1347.655) [-1341.870] (-1347.845) (-1366.913) * (-1358.020) (-1364.074) (-1362.090) [-1365.388] -- 0:15:25
163000 -- (-1357.508) (-1354.525) [-1356.151] (-1364.724) * (-1346.453) (-1346.837) (-1378.479) [-1353.237] -- 0:15:24
164000 -- (-1354.878) (-1358.730) [-1364.679] (-1353.667) * [-1350.945] (-1362.176) (-1365.040) (-1369.735) -- 0:15:22
165000 -- [-1362.770] (-1367.419) (-1368.062) (-1358.110) * (-1361.795) (-1373.241) (-1377.486) [-1352.803] -- 0:15:21
Average standard deviation of split frequencies: 0.018783
166000 -- (-1358.779) (-1352.035) [-1355.380] (-1371.989) * (-1364.253) (-1375.113) (-1359.043) [-1362.916] -- 0:15:24
167000 -- [-1354.046] (-1370.149) (-1354.531) (-1352.491) * (-1366.666) [-1356.716] (-1350.186) (-1361.990) -- 0:15:22
168000 -- (-1364.754) (-1369.231) [-1346.164] (-1345.107) * [-1355.043] (-1360.042) (-1358.494) (-1382.642) -- 0:15:21
169000 -- (-1352.137) [-1361.006] (-1353.298) (-1369.130) * (-1354.207) [-1359.035] (-1371.050) (-1374.251) -- 0:15:19
170000 -- (-1360.701) [-1359.231] (-1351.320) (-1375.190) * (-1357.038) [-1344.094] (-1343.985) (-1368.368) -- 0:15:17
Average standard deviation of split frequencies: 0.018604
171000 -- (-1364.730) (-1358.170) (-1355.597) [-1344.112] * (-1364.107) (-1364.684) [-1348.944] (-1359.727) -- 0:15:16
172000 -- [-1348.931] (-1376.249) (-1359.691) (-1366.962) * (-1381.335) (-1358.761) [-1351.580] (-1360.088) -- 0:15:14
173000 -- [-1347.692] (-1364.143) (-1359.105) (-1368.641) * (-1367.055) (-1346.738) [-1353.470] (-1360.199) -- 0:15:13
174000 -- (-1365.321) [-1367.973] (-1353.214) (-1363.080) * (-1353.050) (-1352.236) (-1355.038) [-1349.497] -- 0:15:11
175000 -- (-1355.453) (-1347.962) (-1353.538) [-1366.433] * (-1380.027) (-1356.374) [-1351.828] (-1377.569) -- 0:15:14
Average standard deviation of split frequencies: 0.018629
176000 -- (-1366.838) [-1356.684] (-1373.045) (-1356.227) * (-1363.063) [-1362.866] (-1350.677) (-1359.894) -- 0:15:12
177000 -- [-1352.152] (-1351.817) (-1349.607) (-1367.986) * (-1355.845) (-1380.048) [-1351.564] (-1347.235) -- 0:15:11
178000 -- [-1349.600] (-1365.276) (-1356.729) (-1377.389) * (-1381.213) (-1361.457) (-1357.753) [-1355.757] -- 0:15:09
179000 -- (-1357.756) (-1361.105) [-1349.486] (-1379.020) * (-1367.679) (-1352.109) (-1370.004) [-1351.055] -- 0:15:08
180000 -- (-1364.200) (-1356.561) [-1354.470] (-1370.332) * (-1355.048) [-1363.564] (-1368.305) (-1360.410) -- 0:15:06
Average standard deviation of split frequencies: 0.018187
181000 -- (-1369.731) [-1347.349] (-1357.075) (-1360.909) * (-1353.778) [-1359.006] (-1364.865) (-1374.160) -- 0:15:04
182000 -- (-1362.725) (-1372.041) [-1351.365] (-1359.132) * [-1352.417] (-1373.868) (-1362.906) (-1362.345) -- 0:15:03
183000 -- (-1375.090) [-1355.741] (-1358.189) (-1355.729) * (-1352.885) (-1350.746) (-1359.591) [-1348.127] -- 0:15:06
184000 -- [-1354.811] (-1359.239) (-1360.458) (-1366.440) * (-1359.383) [-1345.431] (-1355.523) (-1369.082) -- 0:15:04
185000 -- [-1368.156] (-1366.558) (-1366.427) (-1372.941) * [-1339.756] (-1356.292) (-1373.394) (-1355.387) -- 0:15:03
Average standard deviation of split frequencies: 0.017741
186000 -- (-1361.522) (-1369.873) (-1363.678) [-1345.514] * (-1370.069) (-1360.465) (-1361.652) [-1345.446] -- 0:15:01
187000 -- [-1352.268] (-1378.590) (-1368.790) (-1381.707) * (-1369.812) (-1369.052) [-1355.630] (-1345.393) -- 0:14:59
188000 -- (-1356.028) (-1361.381) [-1352.774] (-1364.854) * [-1352.069] (-1343.627) (-1360.277) (-1354.133) -- 0:14:58
189000 -- (-1361.286) (-1359.471) [-1352.209] (-1358.976) * [-1362.622] (-1363.579) (-1366.104) (-1356.623) -- 0:14:56
190000 -- (-1358.060) (-1381.438) [-1361.722] (-1369.576) * (-1375.714) [-1357.167] (-1373.033) (-1355.579) -- 0:14:55
Average standard deviation of split frequencies: 0.017052
191000 -- (-1357.614) (-1357.800) (-1354.241) [-1348.964] * (-1358.358) [-1354.606] (-1367.435) (-1356.383) -- 0:14:53
192000 -- (-1350.185) (-1368.493) [-1345.503] (-1359.515) * [-1353.021] (-1378.255) (-1366.023) (-1361.910) -- 0:14:56
193000 -- [-1355.406] (-1359.980) (-1373.964) (-1361.033) * [-1351.644] (-1353.588) (-1360.631) (-1374.026) -- 0:14:54
194000 -- (-1355.283) (-1353.551) (-1375.969) [-1349.256] * [-1352.237] (-1360.610) (-1358.737) (-1360.757) -- 0:14:53
195000 -- [-1335.912] (-1354.069) (-1374.135) (-1356.825) * (-1366.251) (-1357.440) [-1360.002] (-1343.665) -- 0:14:51
Average standard deviation of split frequencies: 0.016908
196000 -- [-1343.765] (-1358.538) (-1352.852) (-1359.106) * (-1361.368) (-1358.060) (-1363.082) [-1343.871] -- 0:14:50
197000 -- (-1370.691) [-1349.605] (-1372.747) (-1374.350) * (-1356.331) (-1365.037) [-1348.761] (-1345.000) -- 0:14:48
198000 -- (-1365.626) (-1356.978) [-1364.124] (-1356.875) * [-1356.439] (-1375.293) (-1365.563) (-1361.402) -- 0:14:47
199000 -- (-1354.820) (-1358.970) [-1361.959] (-1371.220) * (-1366.385) (-1368.988) (-1351.112) [-1364.680] -- 0:14:45
200000 -- (-1363.004) (-1363.210) (-1348.984) [-1352.290] * (-1353.010) [-1362.261] (-1356.197) (-1351.901) -- 0:14:48
Average standard deviation of split frequencies: 0.017461
201000 -- (-1363.851) (-1355.717) (-1363.221) [-1346.908] * (-1372.075) (-1348.036) [-1358.256] (-1369.961) -- 0:14:46
202000 -- (-1375.303) (-1365.609) [-1354.998] (-1364.059) * [-1363.571] (-1358.479) (-1360.235) (-1378.670) -- 0:14:44
203000 -- (-1395.226) [-1348.354] (-1350.424) (-1364.394) * (-1358.878) (-1366.722) [-1359.142] (-1374.869) -- 0:14:43
204000 -- (-1381.862) (-1349.039) (-1359.278) [-1364.088] * [-1351.468] (-1381.603) (-1360.408) (-1367.820) -- 0:14:41
205000 -- (-1365.754) (-1350.899) [-1354.347] (-1352.443) * (-1365.464) (-1349.127) (-1366.470) [-1360.816] -- 0:14:40
Average standard deviation of split frequencies: 0.017836
206000 -- (-1359.355) (-1353.524) [-1346.859] (-1356.227) * (-1381.019) [-1354.862] (-1352.562) (-1356.944) -- 0:14:38
207000 -- (-1373.986) [-1370.207] (-1365.716) (-1357.792) * (-1376.092) [-1351.695] (-1352.082) (-1358.751) -- 0:14:37
208000 -- [-1348.110] (-1344.205) (-1351.782) (-1362.928) * (-1376.620) (-1358.137) [-1342.800] (-1349.377) -- 0:14:35
209000 -- [-1360.481] (-1359.809) (-1355.433) (-1389.583) * (-1362.510) (-1358.451) (-1369.657) [-1348.500] -- 0:14:38
210000 -- (-1376.314) (-1355.896) (-1352.213) [-1359.875] * (-1366.203) (-1357.964) [-1347.730] (-1352.297) -- 0:14:36
Average standard deviation of split frequencies: 0.017803
211000 -- (-1378.576) (-1364.136) (-1359.545) [-1364.180] * (-1369.145) (-1351.947) [-1344.771] (-1372.513) -- 0:14:35
212000 -- (-1371.391) (-1371.662) [-1355.739] (-1367.623) * (-1379.778) [-1357.728] (-1353.479) (-1360.099) -- 0:14:33
213000 -- (-1378.635) [-1370.314] (-1367.875) (-1360.373) * (-1353.635) (-1375.530) [-1353.205] (-1355.619) -- 0:14:31
214000 -- (-1364.729) (-1359.040) [-1346.829] (-1355.206) * (-1360.297) (-1367.436) [-1352.096] (-1365.116) -- 0:14:30
215000 -- (-1368.085) [-1365.623] (-1370.063) (-1364.238) * [-1353.160] (-1352.513) (-1345.169) (-1369.002) -- 0:14:28
Average standard deviation of split frequencies: 0.017524
216000 -- [-1350.547] (-1368.342) (-1361.602) (-1353.684) * [-1353.953] (-1353.950) (-1356.063) (-1356.316) -- 0:14:27
217000 -- (-1357.615) (-1354.937) [-1356.900] (-1367.702) * [-1348.862] (-1374.182) (-1363.506) (-1365.585) -- 0:14:25
218000 -- (-1343.946) (-1372.270) (-1360.956) [-1349.232] * (-1358.463) (-1350.422) (-1367.570) [-1356.181] -- 0:14:28
219000 -- (-1380.698) (-1351.077) (-1362.507) [-1349.837] * (-1356.536) [-1355.432] (-1366.503) (-1360.634) -- 0:14:26
220000 -- (-1374.615) [-1348.660] (-1353.808) (-1366.360) * (-1353.758) [-1361.265] (-1365.407) (-1365.105) -- 0:14:25
Average standard deviation of split frequencies: 0.017184
221000 -- [-1357.214] (-1375.000) (-1373.445) (-1359.945) * [-1342.527] (-1369.570) (-1368.049) (-1359.564) -- 0:14:23
222000 -- (-1359.116) (-1378.046) (-1363.316) [-1357.767] * (-1351.904) [-1353.391] (-1350.646) (-1358.765) -- 0:14:22
223000 -- (-1357.885) (-1360.246) (-1366.599) [-1361.182] * (-1354.401) (-1361.073) (-1358.700) [-1358.912] -- 0:14:20
224000 -- [-1348.837] (-1355.822) (-1364.391) (-1361.953) * [-1357.411] (-1369.726) (-1367.561) (-1364.514) -- 0:14:19
225000 -- (-1354.219) (-1364.618) [-1343.589] (-1363.489) * [-1352.314] (-1368.367) (-1353.392) (-1360.524) -- 0:14:17
Average standard deviation of split frequencies: 0.017086
226000 -- (-1357.126) (-1358.081) [-1346.417] (-1352.719) * [-1353.791] (-1367.967) (-1354.858) (-1359.961) -- 0:14:16
227000 -- [-1353.956] (-1363.469) (-1361.866) (-1364.556) * [-1342.230] (-1362.163) (-1360.266) (-1342.735) -- 0:14:18
228000 -- (-1357.042) (-1360.958) [-1356.462] (-1363.111) * (-1358.840) (-1358.060) [-1356.231] (-1350.663) -- 0:14:16
229000 -- (-1349.511) [-1350.452] (-1363.310) (-1366.747) * (-1349.134) (-1368.664) (-1355.703) [-1344.474] -- 0:14:15
230000 -- [-1350.031] (-1365.082) (-1365.569) (-1374.850) * (-1370.491) (-1378.407) [-1363.023] (-1363.171) -- 0:14:13
Average standard deviation of split frequencies: 0.017060
231000 -- [-1358.179] (-1351.087) (-1361.704) (-1368.124) * (-1359.269) [-1358.077] (-1357.491) (-1374.045) -- 0:14:12
232000 -- (-1370.210) (-1362.576) (-1366.485) [-1360.807] * (-1345.567) (-1356.916) [-1359.983] (-1375.455) -- 0:14:10
233000 -- (-1373.401) (-1373.898) [-1362.311] (-1361.924) * (-1354.123) (-1355.454) (-1359.147) [-1363.027] -- 0:14:09
234000 -- (-1355.039) (-1371.640) (-1363.688) [-1344.881] * (-1349.582) (-1376.773) [-1341.875] (-1376.389) -- 0:14:07
235000 -- [-1360.675] (-1368.818) (-1360.311) (-1354.944) * (-1351.007) (-1378.075) [-1345.298] (-1359.385) -- 0:14:06
Average standard deviation of split frequencies: 0.017684
236000 -- (-1369.066) (-1377.798) (-1358.167) [-1344.354] * (-1383.192) (-1363.317) [-1345.725] (-1358.827) -- 0:14:04
237000 -- (-1357.194) (-1358.574) [-1351.578] (-1357.925) * (-1358.470) (-1355.133) [-1355.375] (-1351.255) -- 0:14:03
238000 -- (-1367.303) (-1355.772) [-1344.228] (-1366.293) * (-1366.957) (-1358.647) [-1344.690] (-1359.778) -- 0:14:02
239000 -- (-1350.815) (-1373.876) [-1358.603] (-1372.515) * (-1362.752) (-1366.591) [-1349.622] (-1356.324) -- 0:14:00
240000 -- [-1359.609] (-1381.638) (-1343.544) (-1351.962) * [-1347.142] (-1362.581) (-1363.614) (-1362.389) -- 0:14:02
Average standard deviation of split frequencies: 0.018330
241000 -- (-1355.818) (-1367.135) (-1360.321) [-1350.076] * (-1351.709) (-1359.224) [-1359.719] (-1354.526) -- 0:14:00
242000 -- (-1356.756) (-1388.629) (-1368.951) [-1352.970] * (-1360.664) (-1365.234) (-1367.845) [-1359.513] -- 0:13:59
243000 -- (-1378.579) (-1364.032) (-1357.536) [-1348.018] * [-1348.788] (-1372.084) (-1367.864) (-1359.014) -- 0:13:57
244000 -- [-1363.762] (-1363.538) (-1369.611) (-1369.128) * [-1360.120] (-1364.663) (-1359.535) (-1364.196) -- 0:13:56
245000 -- (-1364.382) (-1359.359) [-1360.799] (-1357.452) * (-1369.218) [-1349.333] (-1369.734) (-1369.187) -- 0:13:55
Average standard deviation of split frequencies: 0.018036
246000 -- [-1348.383] (-1364.320) (-1350.908) (-1360.810) * (-1364.359) [-1346.198] (-1358.939) (-1367.136) -- 0:13:53
247000 -- (-1363.886) (-1346.332) (-1373.488) [-1368.760] * [-1349.303] (-1352.180) (-1359.055) (-1370.701) -- 0:13:52
248000 -- (-1360.485) (-1354.530) (-1371.887) [-1351.761] * (-1349.777) (-1356.713) (-1369.421) [-1355.274] -- 0:13:50
249000 -- (-1365.842) (-1354.914) (-1364.069) [-1351.774] * (-1350.730) [-1347.124] (-1354.139) (-1355.740) -- 0:13:52
250000 -- [-1346.760] (-1373.732) (-1358.855) (-1357.719) * (-1345.209) [-1360.094] (-1350.240) (-1367.487) -- 0:13:51
Average standard deviation of split frequencies: 0.017866
251000 -- (-1364.867) (-1370.892) (-1356.832) [-1363.111] * (-1373.480) (-1360.250) [-1353.230] (-1353.940) -- 0:13:49
252000 -- (-1362.295) (-1369.356) (-1357.166) [-1342.239] * [-1353.665] (-1369.003) (-1376.064) (-1372.372) -- 0:13:48
253000 -- (-1354.849) (-1378.789) (-1365.842) [-1344.564] * (-1365.109) [-1351.230] (-1374.345) (-1368.333) -- 0:13:46
254000 -- (-1360.924) (-1359.129) (-1364.906) [-1344.536] * (-1361.761) (-1361.487) (-1371.638) [-1341.782] -- 0:13:45
255000 -- (-1375.091) [-1347.668] (-1355.313) (-1361.360) * [-1354.375] (-1369.671) (-1372.953) (-1360.736) -- 0:13:43
Average standard deviation of split frequencies: 0.017494
256000 -- (-1365.429) (-1371.498) [-1358.116] (-1344.194) * [-1361.343] (-1356.508) (-1361.843) (-1384.520) -- 0:13:42
257000 -- (-1363.587) (-1370.453) [-1352.251] (-1367.185) * (-1358.336) (-1359.840) (-1357.630) [-1356.740] -- 0:13:41
258000 -- [-1354.093] (-1364.107) (-1370.937) (-1356.056) * (-1385.348) (-1358.718) [-1344.604] (-1350.893) -- 0:13:39
259000 -- (-1365.351) (-1347.751) (-1354.139) [-1352.007] * [-1352.291] (-1350.999) (-1355.657) (-1354.342) -- 0:13:41
260000 -- (-1372.702) (-1352.548) (-1367.170) [-1350.337] * (-1347.179) (-1355.811) (-1353.010) [-1354.231] -- 0:13:39
Average standard deviation of split frequencies: 0.016941
261000 -- (-1368.476) (-1365.177) (-1355.350) [-1342.607] * (-1370.252) [-1352.586] (-1363.765) (-1356.274) -- 0:13:38
262000 -- [-1348.869] (-1364.613) (-1366.639) (-1356.657) * (-1356.670) (-1364.386) (-1374.257) [-1351.649] -- 0:13:36
263000 -- (-1363.692) (-1366.194) (-1357.120) [-1347.720] * (-1364.992) (-1379.441) (-1363.914) [-1344.756] -- 0:13:35
264000 -- [-1347.798] (-1378.306) (-1366.790) (-1357.269) * (-1373.665) (-1344.606) [-1353.355] (-1349.893) -- 0:13:34
265000 -- [-1364.570] (-1359.915) (-1368.351) (-1349.291) * (-1364.752) (-1373.870) [-1358.240] (-1352.484) -- 0:13:32
Average standard deviation of split frequencies: 0.015455
266000 -- (-1358.253) (-1370.622) [-1355.150] (-1350.951) * (-1351.726) (-1377.070) (-1363.587) [-1357.006] -- 0:13:31
267000 -- [-1356.794] (-1358.761) (-1368.687) (-1358.325) * (-1345.730) (-1367.198) [-1350.860] (-1351.235) -- 0:13:32
268000 -- [-1353.747] (-1387.984) (-1361.770) (-1355.950) * (-1365.485) (-1347.863) [-1349.957] (-1362.320) -- 0:13:31
269000 -- (-1354.092) (-1362.899) (-1353.787) [-1344.645] * [-1358.827] (-1358.093) (-1358.228) (-1372.034) -- 0:13:29
270000 -- (-1345.180) [-1357.978] (-1371.251) (-1364.670) * (-1355.834) (-1359.491) [-1356.699] (-1364.178) -- 0:13:28
Average standard deviation of split frequencies: 0.016213
271000 -- (-1368.318) [-1352.570] (-1358.905) (-1363.549) * [-1335.873] (-1351.247) (-1352.847) (-1370.608) -- 0:13:27
272000 -- [-1356.541] (-1360.070) (-1374.386) (-1374.462) * [-1341.453] (-1352.670) (-1374.089) (-1360.966) -- 0:13:25
273000 -- (-1371.264) (-1345.754) [-1359.689] (-1364.866) * [-1345.557] (-1356.293) (-1374.449) (-1371.892) -- 0:13:24
274000 -- (-1358.710) (-1363.965) (-1369.790) [-1356.948] * (-1360.209) (-1366.314) [-1351.828] (-1370.501) -- 0:13:22
275000 -- (-1367.044) (-1362.074) [-1353.525] (-1384.473) * (-1349.133) (-1366.171) (-1373.419) [-1340.460] -- 0:13:24
Average standard deviation of split frequencies: 0.016614
276000 -- (-1364.444) (-1357.905) (-1350.339) [-1357.939] * (-1364.538) (-1358.501) [-1361.956] (-1353.803) -- 0:13:22
277000 -- (-1362.622) (-1373.902) [-1345.169] (-1356.395) * (-1352.508) (-1370.158) [-1357.456] (-1369.507) -- 0:13:21
278000 -- (-1351.822) (-1373.813) [-1346.032] (-1353.414) * (-1369.248) (-1370.254) (-1359.594) [-1352.840] -- 0:13:19
279000 -- (-1377.501) (-1360.013) [-1360.641] (-1363.223) * (-1372.606) (-1357.720) (-1357.830) [-1355.703] -- 0:13:18
280000 -- (-1355.871) (-1360.206) (-1369.433) [-1356.484] * [-1350.432] (-1361.855) (-1361.156) (-1362.657) -- 0:13:17
Average standard deviation of split frequencies: 0.015981
281000 -- [-1343.379] (-1362.867) (-1364.230) (-1362.238) * (-1374.853) (-1381.124) (-1367.795) [-1349.175] -- 0:13:15
282000 -- (-1357.504) [-1365.862] (-1355.924) (-1359.009) * [-1349.740] (-1370.436) (-1383.072) (-1362.487) -- 0:13:14
283000 -- [-1351.109] (-1367.346) (-1356.623) (-1376.245) * (-1355.745) (-1360.969) (-1361.258) [-1370.539] -- 0:13:13
284000 -- [-1357.621] (-1356.649) (-1356.148) (-1368.221) * [-1355.673] (-1351.722) (-1370.616) (-1348.666) -- 0:13:14
285000 -- (-1362.947) (-1349.067) (-1356.220) [-1355.053] * [-1351.514] (-1355.493) (-1350.561) (-1372.793) -- 0:13:12
Average standard deviation of split frequencies: 0.015489
286000 -- (-1358.935) (-1374.026) [-1348.561] (-1368.060) * [-1350.065] (-1356.421) (-1346.174) (-1359.655) -- 0:13:11
287000 -- [-1351.772] (-1364.174) (-1355.414) (-1357.441) * [-1357.786] (-1361.702) (-1380.070) (-1353.294) -- 0:13:10
288000 -- (-1365.935) (-1362.217) (-1361.260) [-1342.707] * [-1356.609] (-1366.164) (-1373.206) (-1351.048) -- 0:13:08
289000 -- (-1362.607) (-1359.408) (-1371.631) [-1359.387] * (-1357.251) (-1368.145) [-1361.744] (-1363.139) -- 0:13:07
290000 -- [-1356.847] (-1358.229) (-1357.835) (-1353.892) * (-1380.129) (-1350.224) [-1363.912] (-1361.021) -- 0:13:05
Average standard deviation of split frequencies: 0.014954
291000 -- [-1355.317] (-1367.829) (-1359.144) (-1360.603) * (-1380.703) (-1359.704) (-1354.608) [-1353.060] -- 0:13:04
292000 -- (-1361.254) [-1358.420] (-1360.128) (-1344.749) * (-1363.656) (-1362.379) (-1360.470) [-1347.815] -- 0:13:03
293000 -- (-1359.860) [-1351.726] (-1384.735) (-1355.249) * (-1360.709) (-1366.180) (-1366.794) [-1345.230] -- 0:13:04
294000 -- (-1354.896) (-1363.763) (-1372.270) [-1343.988] * (-1359.377) (-1368.200) [-1357.634] (-1361.725) -- 0:13:02
295000 -- (-1348.852) (-1355.754) (-1344.799) [-1351.449] * (-1375.590) (-1358.557) (-1355.383) [-1345.123] -- 0:13:01
Average standard deviation of split frequencies: 0.015340
296000 -- (-1355.239) (-1352.223) (-1356.738) [-1348.055] * (-1378.685) (-1365.153) [-1364.473] (-1366.798) -- 0:13:00
297000 -- (-1353.671) (-1361.015) [-1354.576] (-1349.974) * (-1368.451) (-1347.167) (-1373.739) [-1350.262] -- 0:12:58
298000 -- [-1355.330] (-1371.444) (-1349.841) (-1362.053) * (-1365.252) (-1367.841) [-1357.800] (-1371.077) -- 0:12:57
299000 -- (-1357.584) (-1345.023) [-1352.094] (-1357.793) * (-1374.625) (-1367.125) [-1354.785] (-1350.657) -- 0:12:56
300000 -- (-1372.870) (-1353.312) [-1353.250] (-1356.335) * (-1364.632) (-1385.145) (-1374.431) [-1355.073] -- 0:12:54
Average standard deviation of split frequencies: 0.015102
301000 -- (-1362.177) (-1377.930) [-1358.113] (-1357.641) * (-1370.470) (-1356.842) [-1368.786] (-1357.433) -- 0:12:53
302000 -- (-1367.553) [-1362.419] (-1349.256) (-1370.475) * (-1359.636) (-1360.573) (-1362.143) [-1365.837] -- 0:12:51
303000 -- (-1377.399) (-1355.943) [-1344.345] (-1369.187) * (-1356.459) (-1357.065) (-1367.648) [-1355.817] -- 0:12:52
304000 -- (-1365.932) [-1362.225] (-1359.166) (-1353.718) * [-1354.275] (-1363.759) (-1367.762) (-1368.832) -- 0:12:51
305000 -- (-1375.893) (-1354.995) (-1360.542) [-1345.954] * [-1369.948] (-1359.703) (-1380.954) (-1353.826) -- 0:12:50
Average standard deviation of split frequencies: 0.014831
306000 -- [-1355.313] (-1371.456) (-1372.716) (-1350.548) * (-1356.608) [-1349.631] (-1376.650) (-1353.598) -- 0:12:48
307000 -- (-1359.110) (-1360.218) [-1361.560] (-1350.346) * (-1386.860) [-1357.783] (-1361.470) (-1373.782) -- 0:12:47
308000 -- (-1379.269) [-1353.986] (-1362.469) (-1366.685) * (-1387.134) [-1351.845] (-1354.184) (-1354.415) -- 0:12:46
309000 -- [-1358.939] (-1354.781) (-1355.247) (-1360.638) * [-1358.295] (-1364.543) (-1368.488) (-1353.895) -- 0:12:44
310000 -- (-1359.767) [-1355.973] (-1361.132) (-1366.984) * (-1367.627) [-1351.294] (-1370.038) (-1360.830) -- 0:12:43
Average standard deviation of split frequencies: 0.014281
311000 -- [-1348.770] (-1367.660) (-1362.528) (-1365.553) * [-1350.411] (-1363.693) (-1362.673) (-1364.291) -- 0:12:42
312000 -- [-1350.808] (-1365.803) (-1369.721) (-1368.907) * (-1366.448) [-1349.090] (-1365.890) (-1363.264) -- 0:12:40
313000 -- [-1350.829] (-1362.631) (-1380.646) (-1360.511) * (-1378.833) (-1347.718) (-1371.363) [-1352.575] -- 0:12:41
314000 -- (-1361.173) (-1371.105) (-1358.010) [-1354.665] * (-1367.096) [-1351.463] (-1357.092) (-1366.651) -- 0:12:40
315000 -- [-1353.984] (-1371.547) (-1358.138) (-1346.577) * (-1359.429) (-1365.114) (-1350.259) [-1359.089] -- 0:12:38
Average standard deviation of split frequencies: 0.014361
316000 -- [-1346.254] (-1387.867) (-1350.211) (-1359.562) * (-1361.537) (-1368.698) (-1355.391) [-1352.725] -- 0:12:37
317000 -- (-1347.311) (-1365.482) (-1375.385) [-1357.128] * (-1363.516) (-1364.671) [-1348.898] (-1355.706) -- 0:12:36
318000 -- (-1363.654) [-1349.377] (-1367.213) (-1352.582) * (-1358.966) [-1352.316] (-1350.795) (-1362.362) -- 0:12:34
319000 -- (-1355.613) (-1367.739) (-1367.261) [-1352.720] * (-1359.048) [-1352.272] (-1361.078) (-1362.489) -- 0:12:33
320000 -- (-1359.291) (-1364.903) (-1369.906) [-1347.382] * (-1375.895) (-1353.322) (-1371.983) [-1347.825] -- 0:12:32
Average standard deviation of split frequencies: 0.013735
321000 -- [-1346.479] (-1366.791) (-1373.121) (-1350.939) * (-1364.460) (-1360.196) (-1378.112) [-1346.732] -- 0:12:30
322000 -- (-1362.556) (-1358.249) (-1370.173) [-1371.104] * (-1360.687) (-1361.890) [-1351.047] (-1360.729) -- 0:12:29
323000 -- [-1351.021] (-1362.594) (-1354.805) (-1396.533) * (-1371.590) (-1373.464) [-1344.606] (-1367.923) -- 0:12:30
324000 -- [-1359.386] (-1360.872) (-1367.486) (-1358.212) * (-1365.348) (-1366.597) [-1342.831] (-1363.481) -- 0:12:29
325000 -- [-1353.516] (-1374.830) (-1349.250) (-1347.301) * (-1373.551) (-1366.464) [-1350.194] (-1355.130) -- 0:12:27
Average standard deviation of split frequencies: 0.013844
326000 -- (-1358.196) (-1371.684) [-1356.947] (-1368.694) * (-1369.710) (-1359.510) (-1372.587) [-1368.962] -- 0:12:26
327000 -- (-1359.181) (-1365.344) [-1350.760] (-1352.746) * (-1375.231) (-1353.122) [-1351.301] (-1373.029) -- 0:12:27
328000 -- (-1357.981) (-1372.949) (-1361.921) [-1346.895] * (-1362.357) [-1348.830] (-1351.807) (-1386.367) -- 0:12:25
329000 -- (-1365.802) (-1368.358) [-1350.319] (-1354.627) * (-1356.974) [-1350.406] (-1353.444) (-1364.506) -- 0:12:24
330000 -- (-1356.106) (-1353.149) [-1353.443] (-1378.984) * [-1348.268] (-1345.763) (-1357.219) (-1378.224) -- 0:12:23
Average standard deviation of split frequencies: 0.013648
331000 -- (-1369.631) [-1357.929] (-1361.056) (-1345.900) * (-1371.509) (-1354.383) (-1359.240) [-1362.488] -- 0:12:21
332000 -- (-1355.222) [-1349.629] (-1370.884) (-1350.034) * (-1360.336) (-1360.748) (-1359.663) [-1363.640] -- 0:12:20
333000 -- (-1362.030) (-1362.598) [-1361.744] (-1358.792) * (-1352.566) (-1367.276) [-1354.958] (-1392.414) -- 0:12:19
334000 -- (-1356.664) (-1389.128) [-1350.180] (-1361.057) * (-1356.542) (-1368.979) (-1367.952) [-1355.354] -- 0:12:19
335000 -- [-1354.615] (-1363.660) (-1353.925) (-1361.407) * (-1359.219) (-1352.616) [-1357.225] (-1362.045) -- 0:12:18
Average standard deviation of split frequencies: 0.013762
336000 -- (-1348.134) [-1362.522] (-1362.375) (-1362.290) * (-1366.794) [-1345.083] (-1376.253) (-1354.906) -- 0:12:17
337000 -- [-1344.870] (-1352.515) (-1369.025) (-1362.307) * (-1387.232) (-1353.217) (-1369.592) [-1345.629] -- 0:12:15
338000 -- (-1353.780) (-1360.870) (-1350.667) [-1359.542] * (-1345.473) (-1361.406) (-1369.508) [-1353.077] -- 0:12:14
339000 -- [-1347.227] (-1359.537) (-1363.950) (-1356.166) * [-1341.680] (-1349.990) (-1370.992) (-1361.829) -- 0:12:13
340000 -- (-1350.353) (-1364.769) [-1348.525] (-1360.627) * (-1358.059) [-1348.642] (-1379.298) (-1365.560) -- 0:12:11
Average standard deviation of split frequencies: 0.013553
341000 -- [-1349.306] (-1377.730) (-1365.833) (-1369.588) * [-1354.842] (-1354.177) (-1377.579) (-1367.704) -- 0:12:12
342000 -- (-1367.116) (-1373.920) [-1368.138] (-1386.472) * (-1353.892) (-1366.175) (-1380.232) [-1359.912] -- 0:12:11
343000 -- (-1359.716) (-1389.009) [-1357.278] (-1371.304) * (-1369.044) (-1362.359) (-1354.230) [-1346.263] -- 0:12:09
344000 -- (-1360.924) (-1352.607) (-1354.525) [-1356.128] * [-1351.474] (-1363.164) (-1362.373) (-1359.065) -- 0:12:08
345000 -- [-1353.079] (-1370.847) (-1368.367) (-1373.413) * (-1365.254) [-1347.921] (-1359.553) (-1353.690) -- 0:12:07
Average standard deviation of split frequencies: 0.013604
346000 -- [-1337.337] (-1364.173) (-1367.350) (-1361.321) * (-1358.603) [-1357.929] (-1352.393) (-1355.765) -- 0:12:05
347000 -- (-1362.037) (-1349.853) [-1353.699] (-1370.174) * (-1360.083) (-1371.258) [-1365.366] (-1372.537) -- 0:12:04
348000 -- (-1365.222) [-1352.121] (-1351.704) (-1383.608) * (-1364.542) [-1359.753] (-1356.993) (-1371.112) -- 0:12:03
349000 -- (-1361.529) [-1345.898] (-1345.429) (-1365.014) * (-1365.550) [-1353.987] (-1361.028) (-1359.689) -- 0:12:01
350000 -- (-1366.675) (-1361.827) (-1366.389) [-1352.048] * (-1366.557) (-1362.953) (-1364.689) [-1352.700] -- 0:12:02
Average standard deviation of split frequencies: 0.014392
351000 -- (-1370.554) (-1370.191) [-1355.867] (-1369.694) * [-1342.191] (-1365.701) (-1365.266) (-1358.548) -- 0:12:01
352000 -- (-1379.051) (-1346.442) (-1356.007) [-1351.100] * (-1352.286) [-1350.844] (-1372.618) (-1356.132) -- 0:11:59
353000 -- [-1358.221] (-1368.955) (-1348.565) (-1350.816) * (-1364.253) [-1340.228] (-1377.263) (-1358.288) -- 0:11:58
354000 -- (-1361.694) (-1372.795) (-1353.294) [-1339.312] * (-1361.248) [-1357.884] (-1368.811) (-1383.746) -- 0:11:57
355000 -- (-1377.597) (-1379.872) [-1343.581] (-1351.850) * (-1356.492) (-1354.664) [-1355.669] (-1380.813) -- 0:11:55
Average standard deviation of split frequencies: 0.014800
356000 -- (-1351.648) (-1364.271) (-1370.853) [-1369.141] * [-1358.209] (-1363.463) (-1363.886) (-1371.386) -- 0:11:54
357000 -- (-1367.435) (-1363.720) [-1358.693] (-1363.830) * (-1358.244) (-1351.267) (-1362.090) [-1349.119] -- 0:11:53
358000 -- (-1352.330) (-1360.927) (-1352.103) [-1368.219] * [-1368.013] (-1351.717) (-1378.037) (-1351.574) -- 0:11:53
359000 -- (-1354.562) [-1341.013] (-1358.723) (-1369.785) * (-1368.117) (-1361.828) (-1386.817) [-1350.585] -- 0:11:52
360000 -- [-1348.165] (-1355.934) (-1370.752) (-1359.073) * (-1360.132) [-1353.402] (-1371.219) (-1345.914) -- 0:11:51
Average standard deviation of split frequencies: 0.014839
361000 -- (-1346.982) [-1351.938] (-1365.314) (-1364.507) * (-1382.258) (-1369.357) (-1353.264) [-1349.529] -- 0:11:49
362000 -- (-1365.380) (-1366.572) (-1358.805) [-1359.432] * (-1375.703) (-1375.995) (-1348.062) [-1339.466] -- 0:11:48
363000 -- (-1359.578) (-1344.535) [-1354.949] (-1355.966) * (-1358.370) [-1352.208] (-1353.618) (-1354.780) -- 0:11:47
364000 -- (-1364.174) (-1356.665) [-1336.286] (-1353.231) * (-1352.949) (-1358.696) [-1352.137] (-1373.946) -- 0:11:45
365000 -- (-1345.321) (-1355.501) [-1352.003] (-1363.712) * (-1359.614) (-1361.809) [-1352.177] (-1356.344) -- 0:11:44
Average standard deviation of split frequencies: 0.015077
366000 -- (-1341.954) [-1357.069] (-1374.354) (-1372.134) * (-1366.214) (-1364.056) [-1351.723] (-1357.377) -- 0:11:45
367000 -- [-1352.188] (-1365.700) (-1374.845) (-1360.809) * (-1378.644) (-1353.541) [-1354.709] (-1356.832) -- 0:11:43
368000 -- (-1382.287) [-1352.905] (-1366.404) (-1374.754) * [-1345.595] (-1352.299) (-1359.492) (-1371.161) -- 0:11:42
369000 -- [-1353.864] (-1360.953) (-1376.052) (-1362.281) * (-1347.152) (-1360.605) (-1370.508) [-1348.181] -- 0:11:41
370000 -- (-1361.389) (-1350.609) (-1379.182) [-1355.026] * (-1360.137) [-1352.235] (-1366.738) (-1370.277) -- 0:11:39
Average standard deviation of split frequencies: 0.015336
371000 -- (-1359.524) [-1341.606] (-1377.926) (-1363.471) * (-1373.607) (-1353.985) [-1346.121] (-1376.873) -- 0:11:38
372000 -- (-1349.024) (-1359.459) [-1357.982] (-1365.006) * (-1389.362) (-1355.791) [-1350.597] (-1369.312) -- 0:11:37
373000 -- [-1350.595] (-1369.286) (-1364.044) (-1368.663) * (-1350.633) [-1369.026] (-1364.435) (-1354.563) -- 0:11:35
374000 -- (-1369.856) (-1367.175) (-1360.274) [-1351.130] * (-1352.125) (-1354.985) (-1366.663) [-1349.998] -- 0:11:34
375000 -- (-1361.910) [-1363.147] (-1362.885) (-1363.427) * (-1358.541) [-1344.625] (-1363.568) (-1361.841) -- 0:11:33
Average standard deviation of split frequencies: 0.014768
376000 -- [-1362.259] (-1357.961) (-1379.103) (-1360.290) * (-1352.506) [-1346.767] (-1383.088) (-1343.516) -- 0:11:33
377000 -- (-1357.076) [-1354.798] (-1378.511) (-1367.734) * (-1372.662) [-1360.450] (-1367.644) (-1346.447) -- 0:11:32
378000 -- [-1361.009] (-1345.206) (-1359.917) (-1369.982) * (-1366.742) (-1355.878) [-1352.631] (-1375.124) -- 0:11:31
379000 -- [-1349.832] (-1349.501) (-1350.185) (-1355.458) * (-1349.450) (-1365.614) [-1356.728] (-1377.890) -- 0:11:29
380000 -- (-1344.578) (-1371.471) [-1356.189] (-1354.934) * (-1359.574) [-1357.310] (-1366.539) (-1366.543) -- 0:11:28
Average standard deviation of split frequencies: 0.014897
381000 -- (-1358.583) (-1367.267) [-1355.994] (-1365.159) * [-1366.074] (-1362.799) (-1363.903) (-1388.874) -- 0:11:27
382000 -- (-1352.113) (-1382.833) [-1357.527] (-1357.106) * (-1362.582) (-1381.153) [-1352.970] (-1353.247) -- 0:11:25
383000 -- [-1351.108] (-1376.135) (-1372.092) (-1348.235) * (-1363.389) [-1363.765] (-1354.756) (-1358.140) -- 0:11:24
384000 -- (-1353.951) (-1371.821) [-1368.579] (-1365.085) * [-1345.744] (-1364.350) (-1348.386) (-1362.765) -- 0:11:23
385000 -- (-1352.361) [-1350.080] (-1361.900) (-1366.988) * [-1360.128] (-1361.221) (-1353.531) (-1365.835) -- 0:11:22
Average standard deviation of split frequencies: 0.014314
386000 -- (-1351.194) (-1346.959) [-1363.042] (-1363.584) * [-1353.009] (-1355.793) (-1359.358) (-1353.149) -- 0:11:22
387000 -- (-1366.463) [-1352.334] (-1358.594) (-1377.473) * (-1361.369) (-1344.479) [-1359.283] (-1351.005) -- 0:11:21
388000 -- [-1357.505] (-1367.362) (-1353.062) (-1364.901) * (-1360.955) [-1350.438] (-1358.633) (-1353.980) -- 0:11:19
389000 -- (-1362.996) (-1356.905) (-1360.220) [-1359.720] * (-1358.489) [-1359.027] (-1360.870) (-1368.054) -- 0:11:18
390000 -- [-1350.763] (-1354.516) (-1362.028) (-1364.047) * (-1355.086) [-1352.914] (-1369.327) (-1376.441) -- 0:11:17
Average standard deviation of split frequencies: 0.014107
391000 -- (-1348.473) [-1350.554] (-1380.624) (-1345.888) * (-1354.811) [-1360.266] (-1378.402) (-1359.755) -- 0:11:15
392000 -- (-1360.378) (-1347.894) (-1381.261) [-1349.657] * (-1341.701) [-1343.640] (-1364.480) (-1341.602) -- 0:11:14
393000 -- (-1368.940) (-1346.191) (-1386.063) [-1347.914] * (-1350.299) (-1364.745) [-1343.336] (-1356.432) -- 0:11:13
394000 -- [-1354.329] (-1356.571) (-1375.361) (-1356.953) * (-1355.783) (-1357.871) [-1373.575] (-1349.868) -- 0:11:12
395000 -- [-1346.979] (-1352.887) (-1363.635) (-1352.346) * (-1360.310) [-1364.922] (-1382.812) (-1352.587) -- 0:11:10
Average standard deviation of split frequencies: 0.013905
396000 -- (-1363.317) (-1353.262) [-1350.796] (-1370.888) * (-1378.557) (-1350.219) [-1360.811] (-1368.635) -- 0:11:09
397000 -- (-1358.637) (-1353.753) (-1366.209) [-1374.060] * (-1354.418) (-1370.293) [-1357.402] (-1371.839) -- 0:11:09
398000 -- [-1354.364] (-1347.985) (-1367.053) (-1374.232) * (-1360.933) (-1351.718) [-1364.644] (-1384.401) -- 0:11:08
399000 -- (-1386.878) (-1361.583) [-1347.373] (-1365.907) * (-1359.860) (-1374.659) [-1353.256] (-1366.903) -- 0:11:07
400000 -- (-1382.064) (-1364.892) [-1346.830] (-1366.938) * (-1360.292) (-1373.329) [-1349.346] (-1364.073) -- 0:11:06
Average standard deviation of split frequencies: 0.013574
401000 -- (-1364.504) (-1361.476) [-1346.781] (-1365.621) * (-1370.370) (-1375.283) (-1351.886) [-1362.244] -- 0:11:04
402000 -- (-1370.922) (-1349.295) [-1345.034] (-1365.913) * (-1389.513) [-1357.838] (-1362.244) (-1366.684) -- 0:11:03
403000 -- (-1367.831) [-1358.326] (-1370.559) (-1367.898) * (-1355.930) [-1348.724] (-1361.379) (-1385.987) -- 0:11:02
404000 -- [-1354.663] (-1360.273) (-1372.818) (-1368.044) * (-1369.709) (-1362.344) [-1353.629] (-1368.234) -- 0:11:00
405000 -- (-1353.811) [-1343.465] (-1354.001) (-1360.978) * (-1360.463) (-1374.374) (-1354.996) [-1357.193] -- 0:10:59
Average standard deviation of split frequencies: 0.013984
406000 -- [-1356.953] (-1360.751) (-1373.798) (-1371.038) * (-1359.430) (-1377.896) [-1363.408] (-1352.140) -- 0:10:59
407000 -- [-1364.873] (-1363.492) (-1358.078) (-1361.006) * (-1355.812) (-1360.918) (-1374.513) [-1364.531] -- 0:10:58
408000 -- (-1370.125) [-1350.650] (-1369.885) (-1353.973) * [-1366.530] (-1368.510) (-1362.434) (-1358.689) -- 0:10:57
409000 -- [-1359.564] (-1356.444) (-1364.823) (-1352.038) * (-1360.682) (-1361.152) (-1369.305) [-1356.793] -- 0:10:56
410000 -- [-1345.460] (-1364.965) (-1374.686) (-1360.727) * (-1357.867) (-1361.403) [-1368.158] (-1357.585) -- 0:10:54
Average standard deviation of split frequencies: 0.014049
411000 -- (-1353.754) [-1360.070] (-1354.894) (-1357.413) * [-1363.043] (-1363.878) (-1351.576) (-1359.938) -- 0:10:53
412000 -- [-1360.136] (-1376.479) (-1352.701) (-1353.334) * (-1360.355) (-1357.670) (-1379.335) [-1379.745] -- 0:10:52
413000 -- [-1350.985] (-1359.723) (-1352.132) (-1358.340) * (-1362.460) (-1366.066) (-1357.218) [-1358.908] -- 0:10:50
414000 -- (-1359.626) (-1357.270) [-1354.124] (-1360.101) * (-1361.216) [-1347.973] (-1362.922) (-1347.822) -- 0:10:51
415000 -- (-1365.828) (-1356.873) [-1346.930] (-1351.043) * [-1350.020] (-1368.359) (-1361.770) (-1352.494) -- 0:10:49
Average standard deviation of split frequencies: 0.014139
416000 -- (-1360.198) [-1358.716] (-1387.992) (-1368.519) * (-1349.633) (-1357.705) [-1338.958] (-1351.073) -- 0:10:48
417000 -- [-1361.925] (-1364.940) (-1363.428) (-1360.429) * [-1358.643] (-1361.391) (-1362.696) (-1349.419) -- 0:10:47
418000 -- [-1353.078] (-1361.628) (-1357.855) (-1369.535) * (-1361.022) (-1369.770) [-1352.371] (-1355.605) -- 0:10:46
419000 -- (-1366.129) (-1379.916) [-1351.197] (-1361.496) * (-1354.909) (-1349.564) (-1379.171) [-1352.019] -- 0:10:44
420000 -- (-1363.811) [-1347.265] (-1347.205) (-1351.117) * (-1361.084) (-1373.326) (-1358.237) [-1352.499] -- 0:10:43
Average standard deviation of split frequencies: 0.013698
421000 -- (-1363.173) [-1366.313] (-1351.362) (-1345.718) * (-1348.331) [-1357.501] (-1375.654) (-1354.148) -- 0:10:42
422000 -- (-1344.399) (-1375.834) (-1355.802) [-1348.719] * [-1354.274] (-1360.097) (-1364.979) (-1353.912) -- 0:10:42
423000 -- (-1347.975) (-1368.730) (-1354.262) [-1348.970] * (-1366.440) [-1347.724] (-1364.330) (-1366.899) -- 0:10:41
424000 -- (-1366.070) (-1365.468) [-1350.938] (-1366.860) * (-1362.399) [-1350.133] (-1376.299) (-1351.034) -- 0:10:39
425000 -- (-1363.930) [-1343.213] (-1357.575) (-1353.145) * (-1375.576) (-1353.975) (-1343.751) [-1352.759] -- 0:10:38
Average standard deviation of split frequencies: 0.013296
426000 -- (-1381.998) [-1360.646] (-1357.814) (-1365.379) * (-1357.279) [-1343.591] (-1363.960) (-1352.620) -- 0:10:37
427000 -- [-1370.380] (-1360.458) (-1350.180) (-1355.805) * (-1371.973) (-1367.561) (-1369.136) [-1352.393] -- 0:10:36
428000 -- (-1351.212) (-1364.676) [-1344.623] (-1350.904) * (-1379.501) (-1365.700) [-1347.863] (-1351.593) -- 0:10:34
429000 -- (-1360.721) (-1369.149) [-1342.363] (-1343.285) * (-1352.986) (-1369.631) [-1350.390] (-1364.690) -- 0:10:33
430000 -- [-1367.960] (-1370.635) (-1345.728) (-1349.788) * (-1357.281) (-1386.428) [-1355.105] (-1367.610) -- 0:10:32
Average standard deviation of split frequencies: 0.013201
431000 -- (-1366.833) (-1369.766) [-1353.667] (-1359.382) * (-1357.439) [-1353.286] (-1368.738) (-1370.825) -- 0:10:32
432000 -- [-1351.602] (-1361.822) (-1358.137) (-1368.598) * (-1353.419) [-1350.017] (-1361.324) (-1352.527) -- 0:10:31
433000 -- (-1362.294) (-1355.686) [-1346.762] (-1366.455) * (-1357.334) (-1362.066) [-1346.409] (-1367.463) -- 0:10:29
434000 -- (-1364.724) (-1355.029) (-1376.683) [-1355.750] * (-1356.033) (-1377.406) [-1346.339] (-1356.365) -- 0:10:28
435000 -- (-1352.890) [-1356.061] (-1371.366) (-1358.535) * (-1357.684) (-1355.505) [-1346.214] (-1347.149) -- 0:10:27
Average standard deviation of split frequencies: 0.013105
436000 -- (-1344.593) (-1358.519) (-1360.999) [-1353.076] * (-1372.610) (-1355.788) (-1363.375) [-1354.939] -- 0:10:26
437000 -- [-1361.847] (-1353.995) (-1368.018) (-1358.817) * (-1362.891) (-1353.438) (-1367.322) [-1348.332] -- 0:10:24
438000 -- (-1366.535) (-1360.725) [-1357.088] (-1377.159) * (-1346.299) (-1360.184) [-1346.936] (-1352.437) -- 0:10:23
439000 -- [-1353.072] (-1369.717) (-1363.398) (-1368.308) * (-1356.359) (-1354.752) [-1360.919] (-1349.810) -- 0:10:23
440000 -- (-1353.027) (-1390.538) [-1349.758] (-1375.854) * [-1349.258] (-1356.357) (-1365.138) (-1354.915) -- 0:10:22
Average standard deviation of split frequencies: 0.012286
441000 -- [-1352.589] (-1354.015) (-1350.953) (-1366.394) * [-1358.283] (-1372.740) (-1355.242) (-1341.807) -- 0:10:21
442000 -- (-1376.838) [-1354.057] (-1358.016) (-1360.112) * [-1367.369] (-1342.645) (-1356.380) (-1375.700) -- 0:10:19
443000 -- (-1375.824) (-1355.069) [-1357.199] (-1370.665) * (-1379.802) [-1359.601] (-1362.985) (-1348.797) -- 0:10:18
444000 -- (-1381.179) (-1363.484) [-1346.635] (-1353.859) * [-1352.921] (-1359.471) (-1362.746) (-1356.784) -- 0:10:17
445000 -- (-1381.718) [-1352.853] (-1362.471) (-1353.236) * (-1355.783) [-1360.328] (-1370.253) (-1355.539) -- 0:10:16
Average standard deviation of split frequencies: 0.012587
446000 -- (-1364.622) (-1369.313) (-1365.951) [-1356.687] * (-1367.790) (-1368.821) (-1361.797) [-1352.229] -- 0:10:14
447000 -- (-1358.125) (-1372.965) [-1350.579] (-1343.891) * (-1366.556) (-1363.723) [-1350.095] (-1341.378) -- 0:10:13
448000 -- (-1364.404) [-1357.011] (-1364.232) (-1378.430) * (-1371.149) (-1369.635) (-1352.579) [-1349.851] -- 0:10:13
449000 -- [-1350.836] (-1358.567) (-1359.642) (-1366.110) * (-1357.340) (-1356.101) [-1355.136] (-1346.166) -- 0:10:12
450000 -- (-1365.149) (-1359.779) [-1368.520] (-1361.965) * (-1363.802) (-1348.314) [-1361.439] (-1358.295) -- 0:10:11
Average standard deviation of split frequencies: 0.011966
451000 -- [-1347.021] (-1349.769) (-1362.016) (-1364.925) * (-1348.768) [-1344.521] (-1356.958) (-1369.103) -- 0:10:09
452000 -- (-1361.243) [-1350.635] (-1357.747) (-1352.234) * (-1361.652) [-1352.498] (-1359.378) (-1359.186) -- 0:10:08
453000 -- (-1366.408) [-1344.641] (-1364.816) (-1374.141) * [-1340.704] (-1362.688) (-1351.656) (-1349.021) -- 0:10:07
454000 -- [-1354.351] (-1363.160) (-1362.529) (-1364.402) * (-1354.093) (-1352.144) (-1357.973) [-1354.747] -- 0:10:06
455000 -- (-1346.043) (-1372.557) [-1342.011] (-1374.442) * (-1359.208) (-1359.115) [-1344.619] (-1359.080) -- 0:10:04
Average standard deviation of split frequencies: 0.012390
456000 -- (-1358.842) (-1362.006) (-1369.265) [-1358.438] * (-1363.272) [-1354.883] (-1352.713) (-1384.082) -- 0:10:03
457000 -- [-1350.704] (-1383.505) (-1353.256) (-1374.141) * [-1350.324] (-1354.260) (-1356.007) (-1364.101) -- 0:10:02
458000 -- (-1359.453) [-1367.306] (-1355.250) (-1359.885) * (-1351.388) [-1352.124] (-1359.323) (-1352.200) -- 0:10:02
459000 -- (-1370.989) (-1363.692) (-1351.245) [-1348.003] * (-1367.079) (-1353.807) (-1369.390) [-1352.739] -- 0:10:01
460000 -- [-1350.984] (-1386.603) (-1352.755) (-1356.284) * (-1344.542) (-1356.590) (-1356.270) [-1340.811] -- 0:09:59
Average standard deviation of split frequencies: 0.011540
461000 -- [-1357.668] (-1375.277) (-1363.954) (-1359.053) * (-1366.089) (-1374.558) (-1365.330) [-1365.609] -- 0:09:58
462000 -- (-1360.645) (-1365.781) [-1350.071] (-1351.909) * (-1376.634) [-1357.682] (-1368.457) (-1356.556) -- 0:09:57
463000 -- (-1371.637) (-1343.445) (-1362.382) [-1352.805] * [-1357.742] (-1357.601) (-1377.834) (-1366.787) -- 0:09:56
464000 -- [-1343.612] (-1364.331) (-1359.247) (-1361.569) * (-1362.087) (-1354.345) (-1364.721) [-1352.292] -- 0:09:54
465000 -- (-1354.998) [-1355.892] (-1370.000) (-1369.338) * (-1365.956) (-1354.741) (-1369.505) [-1349.143] -- 0:09:53
Average standard deviation of split frequencies: 0.011732
466000 -- (-1371.158) (-1363.130) [-1357.757] (-1360.576) * (-1358.456) (-1370.243) (-1370.613) [-1353.242] -- 0:09:52
467000 -- (-1376.314) (-1365.747) (-1348.213) [-1357.424] * (-1357.811) (-1374.128) [-1343.642] (-1359.391) -- 0:09:51
468000 -- (-1362.656) (-1356.637) [-1362.736] (-1358.466) * [-1355.871] (-1364.903) (-1356.888) (-1361.541) -- 0:09:51
469000 -- (-1351.660) (-1367.735) (-1364.305) [-1344.546] * [-1348.625] (-1346.003) (-1351.518) (-1377.706) -- 0:09:49
470000 -- (-1358.738) (-1364.231) [-1363.135] (-1347.453) * [-1345.850] (-1348.015) (-1360.792) (-1371.724) -- 0:09:48
Average standard deviation of split frequencies: 0.012019
471000 -- [-1341.214] (-1366.983) (-1375.888) (-1356.604) * (-1367.915) [-1352.163] (-1363.669) (-1367.610) -- 0:09:47
472000 -- (-1369.220) (-1362.676) (-1373.998) [-1342.091] * [-1356.984] (-1347.730) (-1354.025) (-1384.955) -- 0:09:46
473000 -- [-1362.903] (-1370.219) (-1344.508) (-1371.930) * (-1365.685) [-1349.365] (-1373.508) (-1371.100) -- 0:09:44
474000 -- (-1363.100) (-1373.870) [-1352.455] (-1369.819) * [-1361.051] (-1355.211) (-1359.617) (-1363.302) -- 0:09:43
475000 -- (-1363.182) [-1354.275] (-1346.924) (-1372.224) * (-1355.931) [-1358.258] (-1358.822) (-1360.199) -- 0:09:42
Average standard deviation of split frequencies: 0.012461
476000 -- (-1365.947) (-1358.462) [-1351.769] (-1367.533) * (-1359.126) (-1367.935) [-1342.996] (-1378.995) -- 0:09:41
477000 -- (-1357.359) [-1358.963] (-1373.292) (-1369.413) * (-1353.552) (-1358.987) (-1361.928) [-1353.061] -- 0:09:40
478000 -- (-1366.660) (-1357.164) (-1370.176) [-1358.438] * (-1369.873) [-1349.940] (-1367.205) (-1373.489) -- 0:09:38
479000 -- (-1364.765) (-1353.310) [-1356.481] (-1382.869) * (-1363.960) (-1375.605) (-1351.294) [-1351.725] -- 0:09:38
480000 -- (-1375.619) [-1363.341] (-1355.976) (-1377.663) * [-1361.156] (-1374.052) (-1358.571) (-1349.104) -- 0:09:37
Average standard deviation of split frequencies: 0.012457
481000 -- [-1352.755] (-1347.061) (-1375.533) (-1364.549) * (-1368.811) (-1373.659) (-1361.457) [-1352.414] -- 0:09:36
482000 -- (-1367.552) (-1372.388) [-1331.393] (-1355.654) * (-1356.271) [-1357.599] (-1360.645) (-1362.548) -- 0:09:34
483000 -- (-1360.749) (-1361.764) (-1354.101) [-1364.087] * [-1360.807] (-1379.734) (-1360.755) (-1377.226) -- 0:09:33
484000 -- (-1364.552) (-1354.296) (-1348.432) [-1347.651] * [-1357.492] (-1366.165) (-1349.875) (-1376.361) -- 0:09:32
485000 -- (-1358.242) (-1370.174) (-1376.353) [-1351.655] * (-1374.087) (-1354.237) (-1354.032) [-1356.393] -- 0:09:31
Average standard deviation of split frequencies: 0.012481
486000 -- (-1367.319) (-1372.762) [-1361.804] (-1364.594) * (-1372.987) [-1345.878] (-1360.682) (-1379.254) -- 0:09:30
487000 -- (-1352.989) [-1355.288] (-1361.231) (-1356.786) * (-1356.374) (-1359.635) [-1363.390] (-1375.062) -- 0:09:28
488000 -- (-1365.622) [-1347.661] (-1384.037) (-1365.139) * (-1371.582) [-1353.917] (-1366.237) (-1365.410) -- 0:09:28
489000 -- (-1354.925) [-1348.858] (-1358.401) (-1351.833) * (-1367.088) [-1353.074] (-1354.846) (-1376.646) -- 0:09:27
490000 -- (-1366.587) (-1378.056) [-1347.226] (-1362.812) * (-1367.328) (-1359.336) (-1370.539) [-1348.558] -- 0:09:26
Average standard deviation of split frequencies: 0.012647
491000 -- (-1349.514) [-1350.099] (-1361.518) (-1364.827) * [-1364.923] (-1353.024) (-1360.348) (-1360.623) -- 0:09:24
492000 -- [-1359.055] (-1355.940) (-1367.263) (-1371.452) * [-1344.573] (-1375.904) (-1378.386) (-1350.650) -- 0:09:23
493000 -- (-1378.315) [-1352.659] (-1357.380) (-1355.526) * [-1361.575] (-1362.131) (-1351.786) (-1368.273) -- 0:09:22
494000 -- (-1374.833) (-1359.362) [-1346.772] (-1362.527) * (-1373.853) [-1347.419] (-1360.017) (-1362.844) -- 0:09:21
495000 -- [-1359.890] (-1365.979) (-1351.529) (-1362.962) * (-1362.271) (-1359.440) (-1373.095) [-1350.795] -- 0:09:20
Average standard deviation of split frequencies: 0.012866
496000 -- (-1354.291) [-1357.993] (-1362.800) (-1356.832) * (-1360.601) (-1396.259) (-1375.770) [-1352.484] -- 0:09:19
497000 -- [-1349.630] (-1361.094) (-1349.400) (-1375.694) * [-1345.130] (-1362.600) (-1360.069) (-1350.424) -- 0:09:18
498000 -- (-1355.624) [-1361.499] (-1349.984) (-1357.279) * (-1364.421) [-1357.714] (-1357.265) (-1360.125) -- 0:09:17
499000 -- [-1348.308] (-1347.907) (-1373.879) (-1381.748) * (-1360.301) (-1371.737) [-1347.422] (-1371.666) -- 0:09:16
500000 -- [-1358.963] (-1338.715) (-1358.359) (-1363.712) * (-1364.296) [-1362.870] (-1366.154) (-1366.681) -- 0:09:15
Average standard deviation of split frequencies: 0.012820
501000 -- (-1352.204) [-1344.532] (-1356.883) (-1365.626) * (-1368.668) [-1363.066] (-1355.334) (-1370.999) -- 0:09:13
502000 -- [-1352.811] (-1355.728) (-1370.744) (-1364.560) * (-1353.149) (-1358.523) [-1352.063] (-1375.397) -- 0:09:12
503000 -- (-1368.186) (-1371.832) (-1360.974) [-1365.097] * (-1348.687) [-1353.156] (-1363.490) (-1374.153) -- 0:09:11
504000 -- (-1360.189) (-1371.331) (-1360.920) [-1345.806] * (-1366.720) (-1353.484) [-1354.516] (-1363.251) -- 0:09:10
505000 -- (-1352.538) (-1362.078) (-1374.078) [-1365.238] * (-1364.685) (-1349.608) [-1352.589] (-1369.173) -- 0:09:09
Average standard deviation of split frequencies: 0.012959
506000 -- (-1374.982) (-1380.652) [-1350.241] (-1355.761) * (-1351.742) (-1357.408) (-1361.359) [-1356.270] -- 0:09:08
507000 -- (-1352.991) (-1357.801) [-1367.215] (-1379.347) * (-1356.855) (-1365.271) (-1352.953) [-1352.157] -- 0:09:07
508000 -- (-1352.766) [-1369.257] (-1362.145) (-1373.657) * (-1389.997) (-1355.013) [-1350.601] (-1359.863) -- 0:09:06
509000 -- [-1347.909] (-1366.937) (-1359.390) (-1354.027) * (-1385.349) [-1357.037] (-1350.382) (-1371.573) -- 0:09:05
510000 -- (-1345.132) (-1354.533) [-1347.499] (-1373.152) * [-1370.846] (-1356.387) (-1372.369) (-1365.779) -- 0:09:03
Average standard deviation of split frequencies: 0.013358
511000 -- (-1340.389) [-1362.363] (-1364.661) (-1372.173) * (-1351.959) [-1344.135] (-1357.360) (-1366.478) -- 0:09:02
512000 -- [-1353.746] (-1363.792) (-1361.266) (-1362.969) * (-1372.137) [-1367.191] (-1348.958) (-1366.954) -- 0:09:01
513000 -- (-1360.187) (-1374.316) (-1364.779) [-1354.060] * (-1372.935) (-1354.085) (-1350.694) [-1347.599] -- 0:09:01
514000 -- (-1362.445) (-1370.715) (-1351.110) [-1348.479] * (-1362.191) (-1358.354) [-1368.867] (-1356.105) -- 0:08:59
515000 -- (-1366.085) (-1372.670) (-1356.964) [-1349.602] * (-1353.854) (-1365.327) (-1374.194) [-1341.893] -- 0:08:58
Average standard deviation of split frequencies: 0.012978
516000 -- (-1356.173) (-1362.151) (-1352.991) [-1365.197] * (-1344.004) (-1371.321) (-1380.710) [-1349.456] -- 0:08:57
517000 -- [-1347.535] (-1358.234) (-1360.626) (-1387.963) * (-1354.347) (-1372.559) (-1348.779) [-1354.449] -- 0:08:56
518000 -- (-1353.777) [-1347.351] (-1370.449) (-1375.157) * (-1359.101) (-1359.099) [-1347.100] (-1356.345) -- 0:08:55
519000 -- (-1353.846) [-1343.535] (-1353.803) (-1360.084) * [-1344.274] (-1366.589) (-1353.478) (-1373.182) -- 0:08:53
520000 -- (-1351.942) (-1356.819) (-1357.957) [-1358.111] * (-1377.261) [-1351.023] (-1364.513) (-1357.835) -- 0:08:52
Average standard deviation of split frequencies: 0.012343
521000 -- (-1370.091) (-1354.308) (-1360.614) [-1353.051] * (-1361.111) (-1358.504) [-1353.813] (-1376.674) -- 0:08:51
522000 -- (-1359.574) [-1345.213] (-1362.507) (-1364.317) * [-1349.510] (-1378.954) (-1362.504) (-1351.710) -- 0:08:51
523000 -- (-1360.699) (-1378.568) [-1354.716] (-1369.074) * (-1343.278) (-1379.781) (-1358.153) [-1355.317] -- 0:08:49
524000 -- [-1352.335] (-1368.074) (-1349.646) (-1365.526) * (-1356.514) [-1356.187] (-1379.186) (-1358.375) -- 0:08:48
525000 -- [-1348.108] (-1357.264) (-1371.066) (-1375.450) * (-1363.796) (-1360.182) [-1359.113] (-1381.180) -- 0:08:47
Average standard deviation of split frequencies: 0.012863
526000 -- (-1348.536) [-1361.383] (-1369.155) (-1366.227) * (-1361.335) (-1374.108) [-1355.468] (-1373.484) -- 0:08:46
527000 -- (-1357.235) (-1348.843) (-1367.587) [-1362.644] * (-1362.834) (-1376.268) [-1353.716] (-1366.485) -- 0:08:45
528000 -- (-1348.871) (-1339.403) (-1363.000) [-1356.119] * (-1360.864) (-1346.310) [-1344.406] (-1363.982) -- 0:08:43
529000 -- [-1349.596] (-1365.157) (-1357.397) (-1354.287) * (-1369.264) (-1353.218) (-1353.651) [-1360.776] -- 0:08:42
530000 -- (-1351.873) [-1366.741] (-1366.033) (-1363.060) * (-1391.556) (-1355.932) [-1361.886] (-1363.122) -- 0:08:41
Average standard deviation of split frequencies: 0.012724
531000 -- (-1349.282) (-1365.108) [-1366.729] (-1367.345) * (-1358.570) (-1385.254) (-1360.402) [-1360.122] -- 0:08:41
532000 -- [-1347.070] (-1358.275) (-1361.395) (-1367.401) * (-1356.866) (-1354.379) [-1347.621] (-1365.051) -- 0:08:39
533000 -- [-1349.782] (-1364.134) (-1351.491) (-1359.032) * (-1371.190) (-1361.099) [-1354.728] (-1357.466) -- 0:08:38
534000 -- (-1362.409) (-1357.468) [-1351.737] (-1369.994) * (-1360.968) (-1352.691) [-1365.658] (-1368.569) -- 0:08:37
535000 -- (-1371.768) (-1359.365) [-1356.776] (-1381.202) * (-1366.654) [-1344.483] (-1373.476) (-1351.445) -- 0:08:36
Average standard deviation of split frequencies: 0.012959
536000 -- (-1369.053) (-1351.768) [-1361.195] (-1369.694) * [-1364.257] (-1369.686) (-1369.510) (-1369.434) -- 0:08:35
537000 -- (-1375.743) (-1365.824) (-1359.072) [-1345.448] * (-1369.553) (-1351.153) (-1363.301) [-1361.913] -- 0:08:33
538000 -- (-1364.823) (-1368.656) (-1361.267) [-1350.357] * (-1372.018) [-1361.200] (-1357.483) (-1379.698) -- 0:08:32
539000 -- [-1362.843] (-1367.580) (-1355.928) (-1338.655) * (-1349.027) [-1345.769] (-1361.770) (-1369.758) -- 0:08:31
540000 -- [-1341.754] (-1378.746) (-1351.636) (-1355.923) * [-1359.694] (-1369.551) (-1368.774) (-1361.715) -- 0:08:30
Average standard deviation of split frequencies: 0.012909
541000 -- (-1353.133) (-1373.564) [-1346.680] (-1352.214) * [-1360.380] (-1365.579) (-1367.616) (-1361.297) -- 0:08:29
542000 -- (-1372.618) (-1363.864) [-1356.702] (-1352.192) * (-1375.401) [-1345.795] (-1368.133) (-1364.779) -- 0:08:28
543000 -- (-1366.717) (-1360.233) [-1346.865] (-1356.885) * (-1359.111) [-1342.599] (-1358.326) (-1364.384) -- 0:08:27
544000 -- (-1360.379) (-1354.692) (-1345.961) [-1345.225] * (-1353.853) (-1362.552) (-1361.698) [-1355.453] -- 0:08:26
545000 -- (-1368.691) [-1352.963] (-1366.620) (-1348.025) * [-1349.241] (-1357.160) (-1371.469) (-1359.009) -- 0:08:25
Average standard deviation of split frequencies: 0.012693
546000 -- (-1368.073) (-1359.988) [-1352.720] (-1367.525) * [-1344.602] (-1368.956) (-1355.420) (-1371.006) -- 0:08:23
547000 -- (-1369.930) (-1364.900) (-1373.272) [-1364.331] * [-1352.119] (-1365.894) (-1358.182) (-1356.381) -- 0:08:22
548000 -- (-1370.235) (-1356.013) (-1352.893) [-1360.658] * (-1378.337) (-1352.724) [-1354.027] (-1360.131) -- 0:08:21
549000 -- (-1352.209) [-1350.275] (-1363.097) (-1382.064) * [-1355.694] (-1353.406) (-1369.586) (-1352.099) -- 0:08:20
550000 -- [-1336.528] (-1353.902) (-1361.570) (-1368.731) * (-1354.691) (-1370.187) (-1351.392) [-1355.974] -- 0:08:19
Average standard deviation of split frequencies: 0.012903
551000 -- (-1360.408) (-1360.531) [-1355.502] (-1358.415) * (-1378.480) [-1353.331] (-1351.210) (-1356.387) -- 0:08:17
552000 -- (-1364.317) (-1345.131) [-1355.145] (-1375.580) * (-1366.347) (-1378.094) [-1367.919] (-1366.758) -- 0:08:17
553000 -- (-1367.757) (-1363.040) [-1365.991] (-1356.819) * (-1362.778) [-1343.542] (-1355.930) (-1350.901) -- 0:08:16
554000 -- (-1366.716) (-1348.437) (-1343.820) [-1350.544] * (-1360.078) [-1342.938] (-1367.151) (-1352.410) -- 0:08:15
555000 -- (-1364.714) (-1368.176) [-1352.335] (-1360.436) * (-1354.327) (-1360.906) [-1351.190] (-1374.547) -- 0:08:13
Average standard deviation of split frequencies: 0.013086
556000 -- (-1374.204) (-1356.309) [-1349.073] (-1356.595) * (-1367.901) (-1350.723) (-1340.498) [-1349.289] -- 0:08:12
557000 -- (-1374.650) (-1354.983) [-1345.833] (-1364.295) * (-1359.661) (-1358.830) (-1357.420) [-1359.189] -- 0:08:11
558000 -- (-1357.188) (-1349.687) [-1351.744] (-1353.109) * [-1354.778] (-1359.096) (-1349.421) (-1368.380) -- 0:08:10
559000 -- (-1362.875) [-1366.724] (-1347.548) (-1374.598) * [-1354.824] (-1360.395) (-1377.736) (-1357.430) -- 0:08:09
560000 -- (-1362.761) [-1351.432] (-1340.060) (-1390.289) * (-1357.206) [-1350.309] (-1359.511) (-1374.303) -- 0:08:07
Average standard deviation of split frequencies: 0.012896
561000 -- (-1355.837) (-1367.792) [-1354.220] (-1361.898) * (-1362.834) (-1353.099) (-1376.413) [-1361.224] -- 0:08:06
562000 -- (-1368.248) (-1364.188) [-1349.543] (-1376.340) * (-1368.518) (-1358.095) (-1368.416) [-1353.163] -- 0:08:05
563000 -- (-1361.075) (-1372.682) (-1367.569) [-1353.064] * [-1338.523] (-1364.465) (-1354.814) (-1348.669) -- 0:08:05
564000 -- [-1353.624] (-1370.201) (-1359.306) (-1353.873) * [-1352.705] (-1361.711) (-1359.660) (-1362.982) -- 0:08:03
565000 -- (-1357.392) (-1356.798) (-1365.169) [-1342.774] * (-1360.323) [-1354.445] (-1360.105) (-1366.359) -- 0:08:02
Average standard deviation of split frequencies: 0.012518
566000 -- (-1372.694) (-1367.770) (-1349.417) [-1356.778] * (-1366.087) (-1355.500) [-1345.133] (-1353.693) -- 0:08:01
567000 -- (-1351.765) (-1368.382) (-1361.437) [-1350.478] * (-1357.127) [-1347.389] (-1358.677) (-1359.308) -- 0:08:00
568000 -- [-1343.456] (-1368.817) (-1348.906) (-1350.570) * (-1359.015) [-1357.973] (-1358.157) (-1359.249) -- 0:07:59
569000 -- (-1347.442) (-1356.632) [-1357.364] (-1357.020) * (-1372.490) (-1358.036) (-1364.304) [-1361.474] -- 0:07:57
570000 -- [-1358.579] (-1356.434) (-1373.731) (-1373.663) * (-1356.139) (-1364.079) [-1358.341] (-1363.198) -- 0:07:57
Average standard deviation of split frequencies: 0.012477
571000 -- (-1361.215) (-1344.729) [-1350.859] (-1370.707) * (-1349.848) (-1363.572) [-1356.469] (-1376.033) -- 0:07:56
572000 -- (-1360.657) [-1346.705] (-1374.698) (-1348.330) * (-1352.864) (-1385.141) [-1338.621] (-1366.365) -- 0:07:55
573000 -- (-1354.757) (-1359.543) (-1390.989) [-1356.357] * (-1379.102) (-1376.618) (-1341.667) [-1343.833] -- 0:07:53
574000 -- (-1367.907) [-1345.611] (-1370.613) (-1368.942) * (-1365.131) (-1352.038) [-1355.752] (-1358.158) -- 0:07:52
575000 -- (-1370.664) [-1344.746] (-1352.890) (-1376.776) * (-1361.644) [-1363.974] (-1355.586) (-1363.703) -- 0:07:51
Average standard deviation of split frequencies: 0.012337
576000 -- (-1369.012) [-1345.227] (-1359.965) (-1377.151) * [-1348.993] (-1365.307) (-1355.548) (-1355.988) -- 0:07:50
577000 -- (-1368.822) (-1366.814) (-1370.250) [-1357.687] * (-1371.981) (-1370.826) (-1358.752) [-1354.575] -- 0:07:49
578000 -- [-1360.339] (-1359.442) (-1376.154) (-1358.614) * (-1347.767) (-1361.677) (-1370.138) [-1350.788] -- 0:07:47
579000 -- (-1382.810) [-1345.314] (-1356.886) (-1360.797) * [-1352.427] (-1366.917) (-1359.852) (-1362.873) -- 0:07:46
580000 -- (-1385.753) (-1361.108) (-1364.628) [-1349.535] * [-1354.687] (-1358.900) (-1371.315) (-1351.480) -- 0:07:46
Average standard deviation of split frequencies: 0.012359
581000 -- (-1361.717) (-1366.749) (-1352.310) [-1351.238] * (-1365.019) [-1358.048] (-1372.935) (-1370.914) -- 0:07:45
582000 -- [-1341.414] (-1381.511) (-1350.529) (-1356.201) * (-1359.964) [-1342.422] (-1373.047) (-1375.197) -- 0:07:43
583000 -- (-1354.970) (-1364.840) (-1361.114) [-1355.699] * (-1352.541) (-1371.213) [-1358.233] (-1367.018) -- 0:07:42
584000 -- (-1354.527) [-1365.250] (-1355.830) (-1353.076) * (-1377.414) (-1352.944) [-1344.775] (-1354.189) -- 0:07:41
585000 -- [-1349.898] (-1358.558) (-1357.583) (-1379.072) * (-1367.611) (-1355.813) (-1352.113) [-1353.922] -- 0:07:40
Average standard deviation of split frequencies: 0.012007
586000 -- (-1356.704) (-1350.589) [-1349.873] (-1372.217) * (-1360.678) (-1352.444) [-1350.855] (-1369.550) -- 0:07:39
587000 -- (-1382.395) (-1361.584) [-1361.610] (-1350.472) * (-1345.355) [-1352.439] (-1356.478) (-1367.822) -- 0:07:38
588000 -- (-1364.308) (-1349.733) [-1347.672] (-1364.540) * [-1345.716] (-1360.109) (-1359.755) (-1354.767) -- 0:07:37
589000 -- (-1358.012) (-1359.035) [-1351.666] (-1352.791) * (-1356.423) (-1362.282) [-1353.226] (-1374.218) -- 0:07:36
590000 -- (-1355.443) [-1350.397] (-1349.254) (-1355.293) * [-1354.540] (-1375.283) (-1382.164) (-1349.746) -- 0:07:35
Average standard deviation of split frequencies: 0.012031
591000 -- (-1360.512) (-1376.967) (-1364.827) [-1347.782] * (-1361.451) (-1365.717) [-1357.618] (-1350.226) -- 0:07:33
592000 -- (-1362.903) (-1352.148) (-1357.586) [-1367.849] * (-1352.919) (-1358.614) (-1370.351) [-1352.644] -- 0:07:32
593000 -- (-1372.587) (-1366.528) (-1356.341) [-1341.562] * (-1356.423) (-1355.667) (-1358.741) [-1351.664] -- 0:07:31
594000 -- (-1361.677) (-1365.194) (-1372.835) [-1350.050] * (-1350.192) (-1356.788) (-1370.018) [-1356.450] -- 0:07:30
595000 -- (-1349.397) (-1372.416) (-1356.436) [-1358.396] * (-1361.184) (-1347.051) (-1359.997) [-1348.257] -- 0:07:29
Average standard deviation of split frequencies: 0.011758
596000 -- [-1350.411] (-1349.434) (-1375.362) (-1361.816) * [-1351.460] (-1358.897) (-1362.721) (-1366.324) -- 0:07:28
597000 -- (-1352.741) [-1347.912] (-1379.291) (-1359.407) * (-1348.986) (-1355.304) [-1360.930] (-1363.453) -- 0:07:27
598000 -- (-1372.551) [-1347.798] (-1350.370) (-1359.042) * [-1350.773] (-1364.850) (-1359.095) (-1361.770) -- 0:07:26
599000 -- (-1373.276) (-1378.013) [-1364.253] (-1371.629) * [-1352.134] (-1371.647) (-1363.345) (-1361.279) -- 0:07:25
600000 -- [-1352.399] (-1368.419) (-1352.309) (-1369.301) * (-1360.058) [-1347.630] (-1367.256) (-1358.407) -- 0:07:24
Average standard deviation of split frequencies: 0.011713
601000 -- (-1349.741) (-1360.301) [-1358.448] (-1367.850) * (-1354.225) [-1355.089] (-1357.171) (-1357.653) -- 0:07:22
602000 -- (-1354.526) [-1358.681] (-1378.690) (-1366.293) * [-1347.966] (-1360.542) (-1358.476) (-1353.645) -- 0:07:21
603000 -- (-1354.197) [-1342.212] (-1347.461) (-1357.243) * (-1360.685) (-1360.931) (-1373.937) [-1355.278] -- 0:07:21
604000 -- (-1372.408) (-1354.878) (-1355.750) [-1361.711] * (-1356.341) (-1370.195) [-1353.383] (-1353.956) -- 0:07:19
605000 -- (-1372.071) (-1368.308) (-1361.530) [-1351.611] * [-1352.403] (-1353.932) (-1362.628) (-1365.536) -- 0:07:18
Average standard deviation of split frequencies: 0.011343
606000 -- (-1376.700) (-1369.733) (-1345.585) [-1346.901] * [-1352.914] (-1353.302) (-1364.068) (-1369.850) -- 0:07:17
607000 -- [-1344.192] (-1369.014) (-1352.064) (-1363.164) * (-1360.128) (-1381.697) (-1360.455) [-1355.291] -- 0:07:16
608000 -- [-1347.145] (-1360.207) (-1352.353) (-1352.731) * (-1356.687) (-1372.575) [-1351.739] (-1347.384) -- 0:07:15
609000 -- (-1375.662) (-1362.911) (-1368.860) [-1356.708] * (-1358.411) (-1374.302) (-1351.253) [-1346.635] -- 0:07:14
610000 -- (-1376.392) (-1354.955) [-1356.923] (-1364.802) * (-1372.540) (-1358.878) [-1358.910] (-1363.000) -- 0:07:12
Average standard deviation of split frequencies: 0.011741
611000 -- [-1350.171] (-1362.370) (-1367.101) (-1359.788) * (-1377.027) (-1349.083) (-1381.068) [-1347.739] -- 0:07:11
612000 -- (-1356.893) [-1371.111] (-1377.144) (-1361.397) * (-1370.046) [-1342.118] (-1357.896) (-1345.232) -- 0:07:10
613000 -- [-1364.315] (-1368.122) (-1352.018) (-1364.564) * (-1381.890) (-1354.988) (-1381.825) [-1354.128] -- 0:07:09
614000 -- (-1365.077) (-1354.926) [-1349.296] (-1384.810) * (-1349.050) (-1358.408) [-1360.426] (-1358.593) -- 0:07:08
615000 -- (-1371.616) (-1368.162) [-1349.455] (-1363.403) * (-1369.108) (-1351.893) (-1357.909) [-1347.307] -- 0:07:07
Average standard deviation of split frequencies: 0.011856
616000 -- (-1351.890) (-1363.966) (-1355.438) [-1346.118] * (-1365.288) [-1349.220] (-1356.442) (-1350.336) -- 0:07:06
617000 -- (-1386.091) (-1364.112) [-1356.330] (-1364.848) * [-1347.403] (-1357.644) (-1363.395) (-1370.464) -- 0:07:05
618000 -- (-1372.232) [-1360.786] (-1361.154) (-1357.057) * [-1361.693] (-1371.645) (-1357.820) (-1361.264) -- 0:07:04
619000 -- (-1372.467) (-1359.535) (-1379.247) [-1355.765] * [-1338.843] (-1381.147) (-1351.154) (-1357.647) -- 0:07:02
620000 -- (-1361.378) [-1365.226] (-1370.821) (-1357.844) * (-1355.070) (-1375.776) (-1346.151) [-1351.010] -- 0:07:01
Average standard deviation of split frequencies: 0.011646
621000 -- (-1361.831) (-1368.052) (-1354.420) [-1349.970] * (-1370.146) (-1355.651) (-1364.516) [-1341.583] -- 0:07:00
622000 -- [-1346.009] (-1358.411) (-1364.801) (-1374.297) * (-1355.874) (-1362.004) (-1373.709) [-1346.439] -- 0:06:59
623000 -- [-1353.905] (-1360.133) (-1369.152) (-1372.247) * (-1361.809) [-1347.402] (-1362.743) (-1359.618) -- 0:06:58
624000 -- [-1345.409] (-1369.766) (-1361.283) (-1368.797) * [-1355.745] (-1359.101) (-1354.679) (-1359.300) -- 0:06:57
625000 -- (-1356.866) (-1355.183) [-1352.090] (-1369.859) * (-1367.216) (-1359.400) (-1359.301) [-1352.267] -- 0:06:56
Average standard deviation of split frequencies: 0.011307
626000 -- (-1357.014) (-1356.270) [-1360.958] (-1364.134) * [-1354.112] (-1348.815) (-1361.575) (-1365.232) -- 0:06:55
627000 -- (-1352.939) (-1341.374) [-1344.307] (-1365.116) * [-1353.964] (-1352.337) (-1353.735) (-1355.519) -- 0:06:54
628000 -- (-1358.756) (-1359.125) [-1344.469] (-1368.629) * (-1369.389) (-1351.570) (-1355.225) [-1352.743] -- 0:06:52
629000 -- (-1363.769) (-1362.095) [-1341.732] (-1369.761) * (-1363.459) (-1363.624) [-1343.112] (-1346.838) -- 0:06:51
630000 -- (-1362.825) (-1350.192) [-1354.764] (-1357.412) * (-1366.885) (-1362.590) [-1345.623] (-1346.042) -- 0:06:50
Average standard deviation of split frequencies: 0.011257
631000 -- [-1357.738] (-1362.797) (-1343.928) (-1368.353) * (-1354.928) (-1373.990) (-1363.995) [-1354.310] -- 0:06:49
632000 -- (-1365.935) (-1363.287) [-1353.226] (-1354.884) * (-1364.235) (-1384.598) (-1380.377) [-1343.810] -- 0:06:48
633000 -- (-1354.162) (-1360.099) [-1348.062] (-1372.394) * (-1376.217) (-1377.799) (-1351.913) [-1353.653] -- 0:06:47
634000 -- (-1360.815) [-1367.381] (-1364.626) (-1367.252) * (-1367.017) (-1360.628) (-1360.123) [-1355.472] -- 0:06:46
635000 -- (-1345.379) (-1366.619) [-1363.910] (-1366.244) * (-1375.875) [-1350.657] (-1359.357) (-1358.989) -- 0:06:45
Average standard deviation of split frequencies: 0.011284
636000 -- (-1376.852) (-1343.077) (-1373.984) [-1351.792] * (-1357.049) (-1367.902) (-1367.417) [-1362.688] -- 0:06:44
637000 -- (-1365.290) [-1355.479] (-1350.578) (-1371.141) * (-1360.697) [-1354.632] (-1363.666) (-1358.592) -- 0:06:42
638000 -- [-1355.585] (-1363.638) (-1351.394) (-1385.177) * (-1346.796) [-1355.871] (-1365.203) (-1360.330) -- 0:06:41
639000 -- (-1368.321) (-1361.220) (-1346.720) [-1359.491] * [-1351.485] (-1358.409) (-1369.770) (-1358.804) -- 0:06:40
640000 -- (-1366.421) (-1360.550) [-1364.692] (-1357.618) * [-1350.332] (-1352.696) (-1375.310) (-1369.237) -- 0:06:39
Average standard deviation of split frequencies: 0.011399
641000 -- (-1377.897) (-1365.292) [-1358.178] (-1366.337) * [-1354.161] (-1363.129) (-1370.917) (-1350.029) -- 0:06:38
642000 -- (-1385.723) (-1367.804) [-1358.092] (-1350.462) * (-1357.082) (-1353.871) [-1363.700] (-1359.571) -- 0:06:37
643000 -- [-1363.970] (-1356.773) (-1380.717) (-1361.897) * (-1362.171) (-1354.504) (-1368.025) [-1352.460] -- 0:06:36
644000 -- [-1354.328] (-1371.743) (-1366.926) (-1367.541) * [-1357.335] (-1356.559) (-1353.568) (-1360.956) -- 0:06:35
645000 -- (-1367.555) (-1360.070) (-1366.649) [-1354.568] * [-1354.827] (-1379.637) (-1358.411) (-1358.029) -- 0:06:34
Average standard deviation of split frequencies: 0.010881
646000 -- (-1359.526) [-1355.929] (-1368.283) (-1381.023) * [-1347.911] (-1362.026) (-1348.897) (-1355.236) -- 0:06:32
647000 -- (-1359.985) (-1355.957) (-1360.923) [-1353.322] * (-1349.853) (-1373.819) (-1369.998) [-1349.981] -- 0:06:31
648000 -- [-1354.780] (-1360.094) (-1377.099) (-1366.320) * [-1350.395] (-1376.373) (-1364.593) (-1361.605) -- 0:06:30
649000 -- (-1358.906) (-1352.943) (-1354.952) [-1351.218] * [-1349.482] (-1353.691) (-1372.904) (-1384.171) -- 0:06:29
650000 -- (-1359.623) [-1351.673] (-1380.023) (-1362.062) * (-1350.460) [-1345.470] (-1374.374) (-1370.203) -- 0:06:28
Average standard deviation of split frequencies: 0.010921
651000 -- (-1347.392) [-1351.344] (-1369.368) (-1365.625) * [-1354.702] (-1361.770) (-1370.823) (-1350.740) -- 0:06:27
652000 -- (-1374.254) [-1354.864] (-1347.381) (-1369.390) * (-1382.717) (-1357.624) [-1349.543] (-1353.794) -- 0:06:26
653000 -- (-1375.978) (-1355.706) (-1354.763) [-1350.681] * (-1376.569) [-1352.349] (-1374.687) (-1352.836) -- 0:06:25
654000 -- (-1372.144) (-1353.162) (-1369.222) [-1358.483] * (-1356.702) (-1357.590) [-1346.775] (-1349.778) -- 0:06:24
655000 -- (-1362.352) (-1356.776) (-1366.607) [-1357.341] * (-1376.629) (-1357.319) (-1354.943) [-1358.673] -- 0:06:22
Average standard deviation of split frequencies: 0.010897
656000 -- (-1387.552) [-1347.396] (-1361.564) (-1356.745) * (-1356.308) (-1373.719) (-1355.222) [-1364.986] -- 0:06:21
657000 -- (-1367.293) (-1339.857) [-1363.387] (-1362.491) * (-1370.920) (-1356.816) [-1363.709] (-1364.997) -- 0:06:20
658000 -- (-1369.466) (-1355.752) (-1350.857) [-1356.877] * (-1359.437) (-1362.543) (-1361.297) [-1358.379] -- 0:06:19
659000 -- (-1377.784) (-1354.051) [-1349.041] (-1368.125) * (-1368.764) (-1367.710) [-1356.952] (-1349.927) -- 0:06:18
660000 -- (-1363.198) [-1355.661] (-1359.027) (-1369.937) * (-1350.646) (-1359.591) (-1368.729) [-1356.868] -- 0:06:17
Average standard deviation of split frequencies: 0.010959
661000 -- [-1345.587] (-1354.054) (-1371.768) (-1365.182) * [-1360.243] (-1368.575) (-1351.460) (-1352.633) -- 0:06:16
662000 -- (-1347.069) [-1349.223] (-1358.446) (-1377.086) * (-1361.974) (-1373.538) (-1363.200) [-1370.727] -- 0:06:15
663000 -- (-1347.386) [-1351.622] (-1358.257) (-1362.872) * [-1354.511] (-1360.787) (-1372.154) (-1357.833) -- 0:06:14
664000 -- (-1365.866) (-1350.357) [-1358.691] (-1357.465) * [-1344.599] (-1351.318) (-1370.031) (-1362.769) -- 0:06:12
665000 -- [-1346.552] (-1360.826) (-1367.862) (-1355.010) * (-1360.208) [-1366.253] (-1362.901) (-1366.682) -- 0:06:11
Average standard deviation of split frequencies: 0.011044
666000 -- (-1364.595) [-1355.944] (-1348.677) (-1356.294) * (-1370.197) (-1360.550) [-1365.803] (-1353.151) -- 0:06:10
667000 -- (-1362.567) (-1366.707) (-1361.069) [-1349.913] * [-1365.694] (-1373.851) (-1365.152) (-1353.891) -- 0:06:09
668000 -- (-1360.917) (-1357.421) (-1362.008) [-1341.488] * (-1363.287) (-1355.920) (-1353.978) [-1357.214] -- 0:06:08
669000 -- (-1380.357) [-1348.324] (-1360.191) (-1363.666) * (-1379.936) (-1353.725) [-1347.978] (-1368.548) -- 0:06:07
670000 -- (-1366.304) (-1371.140) (-1354.869) [-1355.630] * (-1359.901) (-1360.570) (-1368.044) [-1345.332] -- 0:06:06
Average standard deviation of split frequencies: 0.010626
671000 -- (-1364.966) (-1369.242) [-1350.291] (-1354.685) * [-1366.954] (-1349.145) (-1348.523) (-1353.398) -- 0:06:05
672000 -- [-1353.094] (-1356.335) (-1350.134) (-1373.075) * [-1351.094] (-1350.301) (-1350.764) (-1352.937) -- 0:06:04
673000 -- (-1356.863) (-1353.885) [-1343.996] (-1374.414) * (-1355.403) [-1360.728] (-1349.795) (-1360.440) -- 0:06:02
674000 -- (-1362.813) (-1359.693) [-1348.490] (-1367.473) * [-1359.669] (-1362.689) (-1372.424) (-1352.356) -- 0:06:01
675000 -- (-1358.685) (-1366.595) (-1356.787) [-1352.086] * (-1375.488) [-1357.022] (-1367.776) (-1364.415) -- 0:06:00
Average standard deviation of split frequencies: 0.010835
676000 -- (-1380.248) [-1358.639] (-1347.191) (-1366.111) * (-1365.717) (-1355.161) [-1356.306] (-1375.199) -- 0:05:59
677000 -- (-1355.988) (-1355.305) [-1345.155] (-1365.715) * (-1373.928) [-1357.868] (-1376.879) (-1356.209) -- 0:05:58
678000 -- (-1353.765) [-1363.945] (-1368.393) (-1364.573) * (-1373.523) (-1360.555) [-1350.548] (-1351.711) -- 0:05:57
679000 -- (-1351.770) (-1370.261) (-1362.291) [-1359.543] * (-1377.152) (-1355.792) (-1361.446) [-1343.491] -- 0:05:56
680000 -- (-1371.610) [-1361.632] (-1372.150) (-1357.997) * (-1361.996) [-1358.080] (-1357.262) (-1367.087) -- 0:05:55
Average standard deviation of split frequencies: 0.011092
681000 -- (-1370.718) (-1366.982) [-1356.195] (-1363.031) * (-1348.768) (-1373.628) [-1351.794] (-1372.895) -- 0:05:54
682000 -- (-1382.331) (-1365.991) (-1340.323) [-1345.944] * (-1364.265) (-1354.908) [-1356.782] (-1357.930) -- 0:05:52
683000 -- (-1368.049) (-1361.142) (-1350.887) [-1364.464] * (-1370.348) (-1356.328) [-1354.527] (-1360.607) -- 0:05:51
684000 -- (-1373.943) (-1369.968) [-1349.537] (-1380.719) * (-1363.691) [-1353.255] (-1356.230) (-1371.792) -- 0:05:50
685000 -- (-1359.852) (-1381.415) (-1359.178) [-1357.465] * (-1357.092) [-1356.741] (-1353.665) (-1364.274) -- 0:05:49
Average standard deviation of split frequencies: 0.011276
686000 -- (-1356.167) [-1357.603] (-1360.198) (-1377.303) * [-1361.230] (-1360.092) (-1366.349) (-1371.994) -- 0:05:48
687000 -- [-1351.115] (-1373.537) (-1349.262) (-1360.829) * (-1363.207) (-1358.306) [-1347.685] (-1361.077) -- 0:05:47
688000 -- (-1348.867) (-1362.418) [-1360.512] (-1364.502) * [-1361.662] (-1365.759) (-1367.144) (-1364.437) -- 0:05:46
689000 -- (-1385.725) [-1360.568] (-1359.041) (-1371.035) * (-1360.941) (-1367.545) [-1357.223] (-1356.937) -- 0:05:45
690000 -- (-1345.746) (-1357.806) [-1349.191] (-1368.044) * (-1355.939) [-1364.392] (-1355.911) (-1353.795) -- 0:05:44
Average standard deviation of split frequencies: 0.011386
691000 -- (-1353.934) (-1371.985) (-1354.213) [-1350.772] * (-1344.117) (-1360.955) [-1344.638] (-1371.379) -- 0:05:42
692000 -- (-1369.203) [-1353.365] (-1376.669) (-1345.516) * [-1350.822] (-1372.633) (-1350.620) (-1358.044) -- 0:05:41
693000 -- (-1364.624) (-1386.832) (-1372.954) [-1346.586] * [-1347.735] (-1358.773) (-1352.627) (-1348.426) -- 0:05:40
694000 -- (-1388.148) (-1357.841) (-1368.257) [-1348.350] * (-1354.017) (-1387.425) (-1362.421) [-1346.203] -- 0:05:39
695000 -- (-1365.574) (-1363.954) (-1349.318) [-1344.989] * (-1350.411) [-1355.873] (-1355.360) (-1358.655) -- 0:05:38
Average standard deviation of split frequencies: 0.011504
696000 -- (-1369.775) [-1368.255] (-1363.364) (-1343.619) * (-1391.819) (-1356.348) (-1363.768) [-1353.586] -- 0:05:37
697000 -- (-1385.492) (-1361.646) (-1359.034) [-1349.460] * (-1359.514) (-1360.806) [-1372.209] (-1370.168) -- 0:05:36
698000 -- (-1367.419) (-1367.474) (-1360.888) [-1352.391] * (-1348.893) (-1362.002) [-1341.355] (-1355.544) -- 0:05:34
699000 -- [-1357.564] (-1354.232) (-1359.636) (-1358.252) * (-1350.704) (-1357.932) (-1362.508) [-1352.469] -- 0:05:34
700000 -- [-1351.340] (-1355.019) (-1356.382) (-1375.715) * (-1355.654) [-1346.646] (-1374.471) (-1361.432) -- 0:05:33
Average standard deviation of split frequencies: 0.011438
701000 -- [-1362.522] (-1359.739) (-1348.908) (-1369.502) * (-1354.496) [-1353.746] (-1349.340) (-1356.944) -- 0:05:31
702000 -- (-1352.911) (-1373.937) (-1368.406) [-1360.241] * (-1365.958) (-1354.909) (-1352.784) [-1348.118] -- 0:05:30
703000 -- (-1355.155) (-1371.468) [-1359.561] (-1367.557) * [-1351.437] (-1370.860) (-1355.121) (-1369.923) -- 0:05:29
704000 -- [-1346.861] (-1365.357) (-1360.729) (-1353.793) * (-1361.044) (-1362.462) (-1354.232) [-1353.510] -- 0:05:28
705000 -- (-1350.444) (-1362.727) [-1355.004] (-1359.509) * [-1358.661] (-1352.384) (-1354.228) (-1343.617) -- 0:05:27
Average standard deviation of split frequencies: 0.011431
706000 -- (-1375.777) (-1361.833) [-1357.533] (-1374.682) * [-1352.794] (-1380.501) (-1373.209) (-1367.171) -- 0:05:26
707000 -- (-1363.807) [-1359.110] (-1351.167) (-1355.824) * (-1347.480) [-1363.282] (-1362.714) (-1383.018) -- 0:05:24
708000 -- [-1354.640] (-1366.944) (-1339.349) (-1361.300) * [-1352.756] (-1360.668) (-1358.549) (-1378.751) -- 0:05:23
709000 -- [-1350.434] (-1368.781) (-1356.799) (-1382.185) * (-1349.977) (-1372.265) (-1364.680) [-1355.162] -- 0:05:22
710000 -- [-1351.964] (-1369.226) (-1347.817) (-1363.753) * (-1367.059) (-1352.692) (-1352.858) [-1354.665] -- 0:05:21
Average standard deviation of split frequencies: 0.011069
711000 -- (-1368.954) (-1358.928) (-1357.662) [-1356.574] * [-1358.545] (-1362.115) (-1359.105) (-1356.042) -- 0:05:20
712000 -- (-1354.981) [-1351.330] (-1353.262) (-1357.354) * [-1349.339] (-1351.641) (-1350.957) (-1363.697) -- 0:05:19
713000 -- (-1362.735) (-1356.076) [-1346.736] (-1363.172) * [-1360.410] (-1366.106) (-1365.881) (-1368.046) -- 0:05:18
714000 -- [-1354.113] (-1384.332) (-1353.482) (-1368.520) * [-1351.558] (-1366.565) (-1363.469) (-1343.667) -- 0:05:17
715000 -- (-1358.307) (-1349.038) [-1356.730] (-1367.469) * (-1352.651) (-1372.400) [-1362.520] (-1353.025) -- 0:05:16
Average standard deviation of split frequencies: 0.010996
716000 -- (-1367.515) (-1355.430) [-1360.494] (-1352.329) * (-1351.793) (-1359.823) (-1367.633) [-1349.453] -- 0:05:14
717000 -- [-1351.293] (-1351.857) (-1359.989) (-1356.694) * (-1358.801) [-1359.729] (-1351.253) (-1360.199) -- 0:05:13
718000 -- [-1355.864] (-1359.702) (-1351.932) (-1364.324) * [-1345.042] (-1370.901) (-1371.901) (-1362.057) -- 0:05:12
719000 -- (-1369.459) (-1362.092) (-1350.106) [-1355.662] * (-1360.416) (-1358.282) [-1344.616] (-1365.606) -- 0:05:11
720000 -- (-1378.958) [-1358.107] (-1360.097) (-1356.251) * (-1354.901) (-1352.155) [-1354.158] (-1353.165) -- 0:05:10
Average standard deviation of split frequencies: 0.010915
721000 -- (-1363.065) (-1363.113) [-1344.844] (-1361.376) * (-1382.237) [-1348.074] (-1358.312) (-1347.118) -- 0:05:09
722000 -- [-1355.011] (-1353.487) (-1377.194) (-1359.524) * (-1370.644) (-1356.313) [-1357.058] (-1361.297) -- 0:05:08
723000 -- (-1373.782) (-1370.804) (-1365.313) [-1369.215] * (-1367.725) [-1363.665] (-1365.979) (-1359.579) -- 0:05:07
724000 -- (-1358.041) (-1357.825) (-1353.417) [-1355.654] * (-1375.924) (-1350.053) [-1351.594] (-1369.426) -- 0:05:06
725000 -- (-1354.634) (-1353.765) (-1357.772) [-1364.173] * (-1378.182) [-1348.779] (-1381.376) (-1373.976) -- 0:05:04
Average standard deviation of split frequencies: 0.011000
726000 -- [-1338.961] (-1351.608) (-1360.232) (-1363.262) * (-1376.126) (-1360.291) [-1360.656] (-1369.178) -- 0:05:03
727000 -- (-1371.007) (-1368.288) (-1374.014) [-1349.410] * [-1367.735] (-1353.827) (-1369.706) (-1360.064) -- 0:05:02
728000 -- (-1369.779) (-1353.777) [-1358.335] (-1363.401) * (-1342.751) (-1358.550) (-1358.799) [-1365.795] -- 0:05:01
729000 -- (-1364.598) [-1340.951] (-1358.819) (-1358.676) * [-1350.930] (-1374.618) (-1365.747) (-1372.189) -- 0:05:00
730000 -- [-1359.256] (-1353.153) (-1365.978) (-1359.103) * [-1348.994] (-1372.961) (-1358.704) (-1357.655) -- 0:04:59
Average standard deviation of split frequencies: 0.011310
731000 -- (-1361.242) (-1373.425) (-1370.027) [-1343.698] * (-1361.570) (-1367.095) [-1350.235] (-1355.360) -- 0:04:58
732000 -- (-1355.848) [-1342.981] (-1373.547) (-1354.202) * [-1348.896] (-1370.477) (-1357.137) (-1343.905) -- 0:04:57
733000 -- (-1366.823) [-1342.772] (-1355.592) (-1361.730) * (-1344.390) (-1359.110) (-1368.561) [-1347.250] -- 0:04:56
734000 -- (-1352.465) (-1354.263) (-1365.470) [-1353.413] * (-1346.860) (-1358.588) [-1352.869] (-1379.480) -- 0:04:54
735000 -- [-1344.742] (-1364.302) (-1381.592) (-1353.164) * (-1353.844) (-1364.865) (-1357.276) [-1358.582] -- 0:04:53
Average standard deviation of split frequencies: 0.011147
736000 -- (-1360.875) (-1369.190) [-1355.888] (-1360.681) * (-1352.303) (-1359.561) [-1342.058] (-1385.315) -- 0:04:52
737000 -- (-1368.185) (-1362.981) [-1347.661] (-1350.129) * (-1341.635) (-1369.900) [-1341.808] (-1371.676) -- 0:04:51
738000 -- (-1354.916) (-1356.372) [-1348.128] (-1367.721) * (-1352.627) (-1368.376) [-1366.782] (-1369.069) -- 0:04:50
739000 -- (-1355.450) (-1369.341) [-1348.164] (-1346.344) * (-1374.817) (-1373.639) [-1348.670] (-1377.193) -- 0:04:49
740000 -- (-1351.033) (-1360.449) [-1348.149] (-1370.879) * (-1360.463) (-1357.087) [-1341.036] (-1371.008) -- 0:04:48
Average standard deviation of split frequencies: 0.010858
741000 -- (-1372.129) (-1364.723) (-1354.723) [-1356.132] * [-1348.249] (-1381.079) (-1367.503) (-1353.556) -- 0:04:47
742000 -- (-1376.955) (-1373.162) (-1363.147) [-1354.428] * (-1353.118) (-1356.124) [-1350.830] (-1352.628) -- 0:04:46
743000 -- (-1364.996) (-1346.796) [-1359.354] (-1348.403) * (-1361.881) [-1355.819] (-1357.453) (-1369.463) -- 0:04:45
744000 -- [-1344.662] (-1360.176) (-1355.825) (-1355.252) * (-1365.089) (-1347.409) [-1339.767] (-1358.804) -- 0:04:43
745000 -- [-1356.303] (-1360.706) (-1359.411) (-1370.102) * [-1356.897] (-1372.311) (-1340.516) (-1366.977) -- 0:04:42
Average standard deviation of split frequencies: 0.010177
746000 -- [-1354.485] (-1377.957) (-1355.564) (-1366.081) * (-1364.467) (-1372.341) (-1366.269) [-1351.094] -- 0:04:41
747000 -- (-1370.360) (-1374.774) (-1352.765) [-1365.152] * (-1359.257) (-1369.463) (-1374.065) [-1343.225] -- 0:04:40
748000 -- [-1354.704] (-1361.897) (-1363.523) (-1354.463) * (-1348.311) (-1357.524) (-1365.794) [-1342.880] -- 0:04:39
749000 -- [-1347.865] (-1356.525) (-1375.992) (-1346.454) * (-1356.149) [-1358.694] (-1371.751) (-1348.491) -- 0:04:38
750000 -- (-1360.398) (-1370.056) [-1361.248] (-1371.201) * (-1360.246) (-1368.483) (-1369.611) [-1353.892] -- 0:04:37
Average standard deviation of split frequencies: 0.009577
751000 -- (-1369.418) (-1356.552) (-1361.604) [-1349.548] * (-1359.561) (-1345.811) (-1358.823) [-1340.726] -- 0:04:36
752000 -- (-1376.668) [-1360.562] (-1357.303) (-1363.979) * [-1351.658] (-1360.691) (-1381.162) (-1362.152) -- 0:04:35
753000 -- (-1357.589) (-1363.349) (-1371.889) [-1363.121] * (-1360.459) (-1359.203) [-1347.368] (-1349.252) -- 0:04:33
754000 -- (-1351.730) (-1347.727) [-1352.773] (-1352.851) * [-1354.264] (-1358.920) (-1345.416) (-1358.462) -- 0:04:32
755000 -- (-1369.642) [-1350.080] (-1356.050) (-1352.310) * (-1375.571) (-1379.027) (-1361.155) [-1348.509] -- 0:04:31
Average standard deviation of split frequencies: 0.009271
756000 -- (-1357.947) [-1355.985] (-1355.732) (-1378.307) * (-1351.748) (-1364.599) [-1352.442] (-1358.283) -- 0:04:30
757000 -- [-1357.567] (-1349.518) (-1370.132) (-1362.093) * (-1356.452) [-1359.519] (-1348.387) (-1361.959) -- 0:04:29
758000 -- (-1369.540) (-1361.301) (-1359.922) [-1351.029] * [-1367.454] (-1362.923) (-1366.332) (-1354.464) -- 0:04:28
759000 -- (-1354.088) (-1363.298) [-1359.437] (-1358.497) * (-1361.700) [-1347.851] (-1365.700) (-1362.611) -- 0:04:27
760000 -- (-1366.696) [-1357.739] (-1381.758) (-1358.910) * [-1367.989] (-1367.144) (-1368.736) (-1362.548) -- 0:04:26
Average standard deviation of split frequencies: 0.009223
761000 -- (-1370.377) [-1347.345] (-1367.464) (-1357.209) * (-1365.790) [-1356.096] (-1374.884) (-1362.081) -- 0:04:25
762000 -- (-1361.754) [-1357.445] (-1365.998) (-1377.673) * (-1366.108) (-1357.638) (-1354.143) [-1343.418] -- 0:04:23
763000 -- (-1367.419) [-1347.886] (-1358.910) (-1383.959) * (-1383.745) [-1342.358] (-1370.205) (-1362.613) -- 0:04:23
764000 -- (-1360.806) (-1368.610) [-1340.725] (-1366.863) * (-1359.309) (-1346.678) [-1353.420] (-1364.361) -- 0:04:21
765000 -- (-1360.668) (-1360.735) (-1382.178) [-1353.878] * [-1346.728] (-1365.155) (-1363.937) (-1362.677) -- 0:04:20
Average standard deviation of split frequencies: 0.008987
766000 -- (-1348.073) [-1360.096] (-1365.944) (-1352.459) * (-1359.524) (-1381.548) (-1363.740) [-1367.698] -- 0:04:19
767000 -- [-1353.248] (-1348.488) (-1378.416) (-1362.871) * (-1356.371) [-1341.250] (-1356.319) (-1362.966) -- 0:04:18
768000 -- (-1364.285) [-1354.706] (-1364.042) (-1378.621) * [-1358.781] (-1354.462) (-1353.323) (-1356.302) -- 0:04:17
769000 -- (-1358.932) [-1344.698] (-1377.319) (-1367.300) * (-1368.242) [-1354.298] (-1359.714) (-1370.174) -- 0:04:16
770000 -- [-1353.683] (-1364.801) (-1367.503) (-1374.536) * [-1352.042] (-1359.506) (-1371.159) (-1371.881) -- 0:04:15
Average standard deviation of split frequencies: 0.008959
771000 -- [-1352.377] (-1369.852) (-1366.346) (-1362.785) * (-1355.069) (-1356.326) [-1343.309] (-1371.192) -- 0:04:13
772000 -- (-1364.490) (-1366.754) [-1349.852] (-1352.384) * (-1377.432) (-1353.764) [-1354.435] (-1370.082) -- 0:04:12
773000 -- (-1367.340) (-1393.107) [-1351.867] (-1352.758) * (-1372.997) (-1356.479) [-1363.199] (-1360.654) -- 0:04:11
774000 -- [-1360.601] (-1377.237) (-1369.420) (-1346.879) * (-1378.197) [-1356.669] (-1355.853) (-1361.890) -- 0:04:10
775000 -- (-1347.642) (-1371.014) (-1365.417) [-1353.008] * [-1351.905] (-1366.191) (-1365.763) (-1364.205) -- 0:04:09
Average standard deviation of split frequencies: 0.008831
776000 -- (-1359.521) (-1359.495) (-1362.764) [-1361.866] * [-1356.731] (-1352.188) (-1363.549) (-1363.630) -- 0:04:08
777000 -- (-1361.593) [-1363.402] (-1357.290) (-1372.162) * (-1355.695) [-1341.326] (-1360.728) (-1352.564) -- 0:04:07
778000 -- (-1379.341) (-1352.041) [-1356.273] (-1385.317) * [-1352.421] (-1360.141) (-1355.994) (-1366.820) -- 0:04:06
779000 -- (-1357.256) [-1346.194] (-1359.454) (-1368.630) * (-1360.664) [-1353.127] (-1356.406) (-1366.285) -- 0:04:05
780000 -- (-1352.057) (-1355.129) (-1364.434) [-1362.266] * (-1362.566) (-1366.255) [-1350.244] (-1357.966) -- 0:04:03
Average standard deviation of split frequencies: 0.008498
781000 -- (-1358.049) [-1346.521] (-1357.775) (-1364.463) * (-1375.155) (-1357.475) [-1341.494] (-1347.698) -- 0:04:02
782000 -- (-1352.956) (-1359.917) [-1348.319] (-1358.065) * (-1355.204) (-1347.863) [-1354.901] (-1350.187) -- 0:04:01
783000 -- (-1342.391) (-1361.203) [-1354.648] (-1358.766) * (-1361.973) (-1352.910) (-1379.627) [-1345.466] -- 0:04:00
784000 -- [-1352.083] (-1360.689) (-1359.315) (-1362.042) * (-1369.646) (-1346.572) (-1354.502) [-1352.813] -- 0:03:59
785000 -- [-1349.551] (-1362.253) (-1369.132) (-1355.536) * [-1353.906] (-1365.252) (-1364.130) (-1355.160) -- 0:03:58
Average standard deviation of split frequencies: 0.008855
786000 -- (-1362.272) [-1349.603] (-1372.782) (-1375.117) * [-1357.068] (-1360.477) (-1371.283) (-1366.266) -- 0:03:57
787000 -- [-1367.202] (-1350.411) (-1371.209) (-1391.351) * (-1352.533) (-1355.840) [-1357.232] (-1371.537) -- 0:03:56
788000 -- (-1374.330) (-1363.892) (-1360.768) [-1363.659] * (-1356.401) (-1358.871) [-1347.294] (-1358.673) -- 0:03:55
789000 -- (-1365.392) (-1370.649) [-1355.203] (-1357.794) * [-1352.631] (-1362.385) (-1365.349) (-1364.400) -- 0:03:53
790000 -- (-1368.238) (-1368.821) (-1363.415) [-1341.978] * (-1369.224) (-1378.433) (-1360.388) [-1343.574] -- 0:03:52
Average standard deviation of split frequencies: 0.008943
791000 -- (-1358.206) (-1363.470) (-1350.258) [-1351.589] * (-1353.004) (-1378.503) (-1367.924) [-1355.639] -- 0:03:51
792000 -- [-1358.979] (-1362.143) (-1359.512) (-1364.195) * (-1352.922) (-1383.451) (-1373.423) [-1349.963] -- 0:03:50
793000 -- (-1360.463) (-1365.946) [-1353.580] (-1368.489) * (-1365.211) (-1359.544) (-1364.007) [-1342.652] -- 0:03:49
794000 -- (-1355.648) (-1360.666) (-1363.340) [-1345.637] * (-1384.651) (-1363.512) (-1351.083) [-1360.003] -- 0:03:48
795000 -- [-1357.041] (-1363.930) (-1368.738) (-1368.868) * [-1348.153] (-1350.781) (-1370.534) (-1353.801) -- 0:03:47
Average standard deviation of split frequencies: 0.009258
796000 -- [-1354.261] (-1354.500) (-1364.502) (-1352.528) * (-1367.454) [-1353.954] (-1361.548) (-1370.791) -- 0:03:46
797000 -- [-1357.919] (-1345.738) (-1371.278) (-1356.240) * (-1370.098) [-1355.887] (-1349.139) (-1358.604) -- 0:03:45
798000 -- (-1374.967) (-1349.136) (-1368.270) [-1354.915] * (-1367.905) (-1353.254) [-1349.256] (-1348.496) -- 0:03:44
799000 -- (-1365.069) [-1362.523] (-1393.400) (-1350.235) * (-1359.219) (-1351.786) [-1347.469] (-1373.429) -- 0:03:42
800000 -- (-1363.576) [-1355.538] (-1359.609) (-1375.348) * (-1371.947) (-1366.388) [-1347.562] (-1354.511) -- 0:03:41
Average standard deviation of split frequencies: 0.009403
801000 -- (-1362.217) [-1351.961] (-1378.005) (-1378.114) * [-1357.861] (-1367.629) (-1346.137) (-1356.818) -- 0:03:40
802000 -- [-1350.291] (-1364.502) (-1377.155) (-1380.765) * (-1349.646) [-1365.214] (-1353.873) (-1363.966) -- 0:03:39
803000 -- (-1361.911) [-1354.771] (-1369.896) (-1368.073) * [-1355.114] (-1380.610) (-1355.668) (-1357.332) -- 0:03:38
804000 -- (-1383.953) [-1355.126] (-1360.889) (-1363.652) * (-1350.413) (-1374.538) (-1372.896) [-1352.415] -- 0:03:37
805000 -- (-1349.408) (-1367.830) [-1345.668] (-1349.006) * (-1362.022) [-1353.856] (-1361.294) (-1367.828) -- 0:03:36
Average standard deviation of split frequencies: 0.009134
806000 -- [-1355.069] (-1381.307) (-1342.672) (-1387.353) * (-1343.035) (-1373.442) (-1370.042) [-1361.764] -- 0:03:35
807000 -- [-1343.214] (-1355.973) (-1362.880) (-1368.149) * (-1348.496) (-1359.553) (-1351.407) [-1359.540] -- 0:03:34
808000 -- [-1357.689] (-1353.177) (-1360.674) (-1366.222) * (-1367.900) [-1348.215] (-1351.341) (-1358.967) -- 0:03:32
809000 -- (-1361.069) (-1358.848) (-1372.132) [-1357.216] * (-1359.650) (-1360.690) [-1355.574] (-1373.038) -- 0:03:31
810000 -- (-1356.532) [-1357.786] (-1353.163) (-1365.120) * [-1353.379] (-1364.444) (-1358.516) (-1371.867) -- 0:03:30
Average standard deviation of split frequencies: 0.008868
811000 -- [-1354.164] (-1376.708) (-1355.600) (-1356.364) * (-1360.774) [-1355.685] (-1370.192) (-1361.937) -- 0:03:29
812000 -- [-1348.014] (-1347.363) (-1358.666) (-1384.722) * [-1343.071] (-1351.053) (-1378.634) (-1352.825) -- 0:03:28
813000 -- [-1359.130] (-1359.119) (-1373.844) (-1367.782) * (-1364.350) (-1356.448) (-1389.149) [-1350.783] -- 0:03:27
814000 -- (-1360.981) (-1360.148) [-1359.048] (-1384.291) * (-1388.393) (-1357.256) [-1348.269] (-1365.027) -- 0:03:26
815000 -- [-1347.758] (-1344.682) (-1355.394) (-1372.875) * (-1364.759) (-1350.960) [-1349.436] (-1359.260) -- 0:03:25
Average standard deviation of split frequencies: 0.009048
816000 -- (-1341.587) [-1355.947] (-1363.291) (-1366.408) * (-1386.210) (-1368.088) [-1350.776] (-1364.834) -- 0:03:24
817000 -- (-1348.862) [-1352.911] (-1362.769) (-1367.397) * (-1357.742) (-1362.225) [-1342.577] (-1375.855) -- 0:03:22
818000 -- (-1355.231) (-1365.508) (-1365.397) [-1362.024] * [-1359.849] (-1347.527) (-1353.458) (-1364.741) -- 0:03:21
819000 -- [-1349.921] (-1370.524) (-1355.111) (-1346.125) * [-1347.617] (-1374.732) (-1365.290) (-1365.394) -- 0:03:20
820000 -- (-1374.117) (-1368.439) (-1351.294) [-1360.360] * (-1359.559) (-1361.817) [-1357.509] (-1360.093) -- 0:03:19
Average standard deviation of split frequencies: 0.009499
821000 -- (-1363.708) [-1349.830] (-1364.342) (-1357.115) * (-1352.969) [-1356.550] (-1357.814) (-1351.688) -- 0:03:18
822000 -- (-1369.625) (-1381.321) (-1359.892) [-1350.103] * (-1379.339) [-1347.917] (-1370.322) (-1363.145) -- 0:03:17
823000 -- (-1357.423) (-1360.113) [-1366.703] (-1348.779) * [-1344.385] (-1355.270) (-1362.490) (-1355.356) -- 0:03:16
824000 -- [-1356.454] (-1368.715) (-1351.083) (-1381.827) * (-1371.561) (-1379.121) [-1365.200] (-1352.247) -- 0:03:15
825000 -- (-1367.554) (-1354.355) (-1365.883) [-1353.939] * (-1359.497) (-1351.944) (-1373.354) [-1345.907] -- 0:03:14
Average standard deviation of split frequencies: 0.009285
826000 -- (-1358.296) (-1361.365) [-1366.675] (-1380.367) * [-1362.977] (-1362.464) (-1354.312) (-1374.411) -- 0:03:12
827000 -- (-1349.133) [-1353.236] (-1353.824) (-1361.362) * (-1364.038) (-1358.363) [-1356.578] (-1363.848) -- 0:03:11
828000 -- (-1366.176) (-1360.564) [-1362.708] (-1381.058) * (-1362.275) (-1351.374) [-1354.428] (-1364.411) -- 0:03:10
829000 -- (-1367.816) (-1344.585) (-1363.275) [-1351.404] * (-1357.051) (-1361.898) [-1360.509] (-1366.098) -- 0:03:09
830000 -- (-1367.236) (-1343.158) [-1352.322] (-1370.556) * [-1351.726] (-1357.195) (-1349.009) (-1369.429) -- 0:03:08
Average standard deviation of split frequencies: 0.009105
831000 -- (-1353.004) (-1356.226) (-1357.616) [-1355.472] * [-1352.868] (-1355.396) (-1381.509) (-1372.226) -- 0:03:07
832000 -- [-1349.019] (-1356.349) (-1358.887) (-1354.470) * (-1364.849) [-1352.658] (-1368.238) (-1370.912) -- 0:03:06
833000 -- (-1358.988) (-1366.854) (-1377.803) [-1345.482] * [-1359.947] (-1367.254) (-1362.169) (-1365.135) -- 0:03:05
834000 -- (-1349.352) (-1366.265) (-1351.543) [-1352.943] * (-1372.551) (-1360.558) (-1367.986) [-1361.338] -- 0:03:04
835000 -- (-1353.898) (-1359.527) (-1359.579) [-1348.930] * (-1357.656) (-1359.089) (-1399.738) [-1353.030] -- 0:03:02
Average standard deviation of split frequencies: 0.009330
836000 -- (-1362.230) (-1360.291) (-1378.347) [-1345.670] * (-1350.784) [-1355.080] (-1378.790) (-1365.862) -- 0:03:01
837000 -- (-1367.782) [-1360.042] (-1366.245) (-1357.851) * (-1365.908) [-1348.737] (-1364.795) (-1359.023) -- 0:03:00
838000 -- (-1357.732) [-1352.553] (-1371.855) (-1354.049) * (-1356.013) (-1367.959) [-1353.638] (-1363.236) -- 0:02:59
839000 -- (-1347.134) [-1359.019] (-1365.977) (-1370.926) * (-1363.539) (-1353.411) (-1350.531) [-1356.247] -- 0:02:58
840000 -- (-1360.495) [-1362.555] (-1373.698) (-1359.025) * (-1357.185) (-1353.919) [-1359.372] (-1358.299) -- 0:02:57
Average standard deviation of split frequencies: 0.009133
841000 -- (-1360.142) [-1347.563] (-1362.626) (-1358.164) * (-1359.364) [-1354.524] (-1366.698) (-1389.497) -- 0:02:56
842000 -- [-1362.841] (-1362.638) (-1366.569) (-1387.675) * (-1365.267) (-1352.363) [-1354.824] (-1359.974) -- 0:02:55
843000 -- (-1359.551) (-1358.630) [-1366.541] (-1367.756) * (-1359.450) (-1357.145) [-1353.677] (-1362.736) -- 0:02:54
844000 -- (-1364.985) (-1358.529) (-1356.363) [-1354.910] * (-1355.020) (-1366.846) (-1367.218) [-1350.360] -- 0:02:53
845000 -- (-1359.972) [-1348.203] (-1370.847) (-1359.410) * [-1355.416] (-1362.265) (-1359.921) (-1367.463) -- 0:02:52
Average standard deviation of split frequencies: 0.009073
846000 -- (-1364.613) [-1345.756] (-1364.270) (-1363.299) * (-1364.476) (-1349.555) (-1350.190) [-1347.011] -- 0:02:50
847000 -- [-1350.202] (-1362.491) (-1367.432) (-1362.830) * (-1356.786) (-1373.516) (-1357.368) [-1352.841] -- 0:02:49
848000 -- (-1359.685) (-1368.819) (-1351.153) [-1357.520] * (-1360.707) (-1381.454) (-1352.767) [-1344.367] -- 0:02:48
849000 -- [-1352.075] (-1368.617) (-1362.632) (-1351.822) * (-1371.506) (-1370.479) [-1352.468] (-1357.593) -- 0:02:47
850000 -- (-1361.676) (-1366.908) (-1368.797) [-1357.724] * (-1359.924) (-1369.961) [-1350.636] (-1368.414) -- 0:02:46
Average standard deviation of split frequencies: 0.009107
851000 -- [-1357.776] (-1371.639) (-1365.546) (-1357.880) * (-1385.381) [-1354.427] (-1353.418) (-1360.801) -- 0:02:45
852000 -- (-1371.547) (-1357.882) (-1380.024) [-1355.050] * [-1357.336] (-1358.979) (-1352.569) (-1363.402) -- 0:02:44
853000 -- [-1356.923] (-1375.007) (-1357.403) (-1366.845) * [-1355.323] (-1368.141) (-1358.198) (-1353.071) -- 0:02:43
854000 -- (-1359.579) [-1353.007] (-1366.820) (-1358.706) * [-1342.806] (-1351.402) (-1363.217) (-1375.929) -- 0:02:41
855000 -- (-1390.349) [-1356.264] (-1357.258) (-1350.932) * (-1353.214) (-1351.724) (-1372.146) [-1363.145] -- 0:02:40
Average standard deviation of split frequencies: 0.009194
856000 -- (-1379.539) (-1380.045) [-1366.360] (-1348.188) * (-1355.406) [-1347.420] (-1367.824) (-1373.641) -- 0:02:39
857000 -- (-1371.826) (-1360.737) [-1355.352] (-1371.525) * [-1359.710] (-1378.633) (-1365.417) (-1355.668) -- 0:02:38
858000 -- (-1364.688) (-1363.747) [-1357.971] (-1366.174) * [-1344.125] (-1370.324) (-1359.749) (-1360.159) -- 0:02:37
859000 -- (-1359.890) [-1364.491] (-1355.915) (-1363.656) * [-1345.038] (-1357.164) (-1361.305) (-1354.876) -- 0:02:36
860000 -- (-1362.794) (-1369.151) [-1360.501] (-1380.233) * [-1345.477] (-1355.173) (-1360.377) (-1366.131) -- 0:02:35
Average standard deviation of split frequencies: 0.009383
861000 -- [-1352.789] (-1351.871) (-1366.567) (-1367.384) * [-1351.463] (-1372.226) (-1357.335) (-1380.840) -- 0:02:34
862000 -- (-1372.730) (-1362.982) (-1367.720) [-1354.256] * (-1362.014) (-1368.098) [-1359.754] (-1353.076) -- 0:02:33
863000 -- (-1383.423) [-1344.880] (-1364.714) (-1371.223) * (-1356.573) (-1363.662) [-1344.088] (-1361.074) -- 0:02:31
864000 -- (-1358.428) (-1357.575) (-1351.890) [-1357.073] * (-1366.399) [-1352.540] (-1349.430) (-1371.815) -- 0:02:30
865000 -- (-1370.326) [-1354.843] (-1376.307) (-1367.624) * (-1356.261) (-1356.924) [-1354.571] (-1381.793) -- 0:02:29
Average standard deviation of split frequencies: 0.009349
866000 -- (-1344.615) (-1352.421) (-1356.428) [-1360.840] * (-1362.115) (-1364.503) (-1355.352) [-1359.492] -- 0:02:28
867000 -- (-1355.445) (-1357.462) (-1367.115) [-1354.297] * (-1356.619) (-1355.825) [-1346.286] (-1365.435) -- 0:02:27
868000 -- (-1361.865) (-1379.996) [-1358.926] (-1384.518) * (-1358.451) (-1347.058) [-1355.194] (-1368.544) -- 0:02:26
869000 -- [-1342.275] (-1376.947) (-1363.093) (-1372.892) * (-1357.175) (-1351.758) [-1341.462] (-1374.731) -- 0:02:25
870000 -- (-1356.780) [-1349.541] (-1359.939) (-1370.355) * [-1350.599] (-1363.119) (-1344.074) (-1366.115) -- 0:02:24
Average standard deviation of split frequencies: 0.009400
871000 -- (-1348.354) [-1365.459] (-1365.407) (-1371.244) * (-1362.481) [-1346.048] (-1366.348) (-1362.125) -- 0:02:23
872000 -- [-1350.251] (-1348.864) (-1351.191) (-1366.556) * (-1361.485) [-1340.523] (-1369.143) (-1357.220) -- 0:02:21
873000 -- [-1341.827] (-1374.655) (-1357.148) (-1342.052) * [-1352.751] (-1354.018) (-1373.466) (-1351.490) -- 0:02:20
874000 -- (-1353.755) [-1345.797] (-1355.779) (-1368.555) * (-1357.222) (-1355.727) [-1360.241] (-1366.035) -- 0:02:19
875000 -- (-1377.577) [-1349.334] (-1367.771) (-1353.278) * (-1362.182) (-1368.552) (-1351.991) [-1358.068] -- 0:02:18
Average standard deviation of split frequencies: 0.009374
876000 -- (-1369.715) (-1349.992) [-1352.960] (-1362.828) * (-1355.538) (-1356.601) [-1357.564] (-1357.686) -- 0:02:17
877000 -- (-1350.650) (-1370.502) [-1345.660] (-1358.738) * (-1362.409) (-1359.879) (-1352.461) [-1360.673] -- 0:02:16
878000 -- [-1355.730] (-1381.603) (-1342.741) (-1353.154) * (-1377.430) (-1373.626) (-1356.421) [-1359.607] -- 0:02:15
879000 -- (-1358.874) (-1366.606) (-1348.132) [-1363.138] * [-1369.052] (-1365.780) (-1358.908) (-1356.709) -- 0:02:14
880000 -- (-1364.574) (-1366.610) [-1344.026] (-1368.988) * (-1367.809) [-1348.355] (-1364.441) (-1360.979) -- 0:02:13
Average standard deviation of split frequencies: 0.009478
881000 -- (-1367.115) (-1357.797) (-1353.703) [-1362.856] * (-1372.902) [-1344.266] (-1369.498) (-1361.934) -- 0:02:11
882000 -- (-1386.028) [-1367.217] (-1353.912) (-1353.795) * (-1362.430) (-1353.489) [-1357.421] (-1375.425) -- 0:02:10
883000 -- (-1353.561) (-1370.381) (-1353.747) [-1350.257] * (-1350.883) [-1355.572] (-1354.017) (-1355.009) -- 0:02:09
884000 -- (-1369.059) (-1341.918) [-1348.931] (-1365.450) * (-1357.556) (-1355.904) [-1360.052] (-1364.936) -- 0:02:08
885000 -- (-1372.051) (-1348.109) [-1350.769] (-1360.434) * (-1360.155) [-1351.092] (-1367.803) (-1375.828) -- 0:02:07
Average standard deviation of split frequencies: 0.009346
886000 -- (-1362.426) (-1359.128) [-1356.686] (-1373.152) * [-1349.714] (-1356.287) (-1357.474) (-1370.743) -- 0:02:06
887000 -- (-1366.562) (-1372.339) [-1345.793] (-1368.727) * (-1361.657) (-1360.155) (-1372.908) [-1362.739] -- 0:02:05
888000 -- (-1368.500) (-1373.944) [-1352.676] (-1368.324) * (-1357.274) [-1347.875] (-1362.726) (-1363.171) -- 0:02:04
889000 -- [-1354.292] (-1354.095) (-1364.006) (-1355.387) * (-1366.920) (-1345.770) (-1364.103) [-1358.969] -- 0:02:03
890000 -- [-1338.259] (-1356.546) (-1369.333) (-1350.692) * (-1366.852) [-1336.866] (-1361.898) (-1363.791) -- 0:02:01
Average standard deviation of split frequencies: 0.009389
891000 -- (-1359.683) [-1355.373] (-1359.133) (-1356.450) * (-1373.151) [-1348.421] (-1352.329) (-1354.418) -- 0:02:00
892000 -- [-1347.964] (-1356.950) (-1360.198) (-1359.945) * (-1365.020) (-1347.215) (-1355.152) [-1344.898] -- 0:01:59
893000 -- (-1374.087) (-1368.712) (-1348.568) [-1359.201] * (-1363.149) [-1351.071] (-1360.010) (-1374.249) -- 0:01:58
894000 -- (-1365.085) (-1351.747) [-1355.222] (-1370.816) * (-1369.796) (-1366.873) [-1360.808] (-1351.388) -- 0:01:57
895000 -- (-1355.896) (-1357.993) [-1363.863] (-1364.232) * (-1358.457) [-1345.182] (-1370.924) (-1368.796) -- 0:01:56
Average standard deviation of split frequencies: 0.009280
896000 -- (-1371.595) (-1373.917) [-1349.758] (-1347.487) * [-1359.845] (-1372.586) (-1364.376) (-1358.822) -- 0:01:55
897000 -- (-1356.418) (-1371.419) [-1353.128] (-1350.798) * [-1354.688] (-1360.356) (-1373.672) (-1357.809) -- 0:01:54
898000 -- (-1359.235) (-1360.323) [-1346.948] (-1353.755) * (-1354.892) [-1352.644] (-1387.222) (-1344.233) -- 0:01:53
899000 -- [-1340.003] (-1363.601) (-1354.063) (-1364.729) * (-1374.766) (-1351.921) (-1347.796) [-1352.807] -- 0:01:52
900000 -- (-1353.672) (-1380.301) [-1352.564] (-1351.824) * (-1362.411) (-1365.411) (-1375.016) [-1351.737] -- 0:01:51
Average standard deviation of split frequencies: 0.009565
901000 -- [-1351.623] (-1374.647) (-1361.127) (-1356.524) * (-1382.306) (-1344.681) (-1367.907) [-1354.533] -- 0:01:49
902000 -- [-1353.268] (-1376.897) (-1366.946) (-1366.277) * (-1362.406) [-1351.789] (-1360.875) (-1368.794) -- 0:01:48
903000 -- (-1360.564) [-1353.317] (-1363.624) (-1375.559) * (-1358.524) [-1360.468] (-1340.843) (-1367.704) -- 0:01:47
904000 -- [-1358.263] (-1345.534) (-1372.471) (-1356.785) * (-1375.957) (-1366.367) [-1357.642] (-1360.636) -- 0:01:46
905000 -- (-1356.532) (-1372.662) (-1358.420) [-1350.833] * (-1368.028) (-1355.049) (-1369.782) [-1357.937] -- 0:01:45
Average standard deviation of split frequencies: 0.009667
906000 -- (-1359.673) [-1351.035] (-1357.652) (-1357.904) * (-1361.400) (-1345.385) (-1375.516) [-1348.822] -- 0:01:44
907000 -- [-1360.766] (-1375.417) (-1359.973) (-1357.157) * [-1351.220] (-1348.435) (-1383.970) (-1362.799) -- 0:01:43
908000 -- (-1357.837) (-1367.189) (-1351.769) [-1366.731] * (-1358.729) [-1354.202] (-1349.269) (-1355.731) -- 0:01:42
909000 -- (-1370.586) (-1359.332) (-1346.645) [-1352.816] * (-1369.187) (-1348.915) (-1362.527) [-1379.922] -- 0:01:41
910000 -- (-1355.143) (-1371.837) [-1358.012] (-1361.828) * [-1346.341] (-1351.762) (-1352.334) (-1362.349) -- 0:01:39
Average standard deviation of split frequencies: 0.009660
911000 -- [-1353.430] (-1363.570) (-1367.596) (-1355.586) * (-1369.254) [-1341.222] (-1360.133) (-1369.148) -- 0:01:38
912000 -- [-1355.394] (-1355.129) (-1358.437) (-1354.723) * (-1370.952) (-1360.758) [-1355.203] (-1368.854) -- 0:01:37
913000 -- (-1363.522) (-1360.052) [-1341.793] (-1375.188) * (-1386.566) [-1345.489] (-1347.189) (-1366.446) -- 0:01:36
914000 -- [-1377.550] (-1376.938) (-1349.875) (-1374.428) * [-1362.324] (-1357.394) (-1369.550) (-1376.208) -- 0:01:35
915000 -- [-1365.611] (-1354.459) (-1362.372) (-1363.065) * (-1369.411) [-1352.955] (-1358.139) (-1362.954) -- 0:01:34
Average standard deviation of split frequencies: 0.009417
916000 -- (-1357.930) (-1355.062) (-1362.942) [-1350.674] * [-1346.804] (-1349.842) (-1358.797) (-1371.346) -- 0:01:33
917000 -- [-1355.617] (-1366.477) (-1358.733) (-1355.312) * (-1360.778) [-1361.284] (-1372.109) (-1362.259) -- 0:01:32
918000 -- (-1363.116) [-1364.645] (-1363.306) (-1364.686) * (-1367.394) [-1354.161] (-1358.976) (-1401.454) -- 0:01:31
919000 -- (-1358.893) (-1371.225) [-1351.288] (-1360.134) * (-1365.024) [-1361.515] (-1363.549) (-1365.032) -- 0:01:29
920000 -- (-1381.819) (-1362.539) [-1347.284] (-1348.172) * [-1346.487] (-1352.242) (-1385.129) (-1355.025) -- 0:01:28
Average standard deviation of split frequencies: 0.009247
921000 -- (-1377.845) (-1370.758) (-1343.644) [-1351.820] * (-1355.585) [-1348.867] (-1385.733) (-1347.834) -- 0:01:27
922000 -- (-1361.686) (-1381.872) (-1366.766) [-1349.352] * (-1363.167) (-1368.305) (-1367.453) [-1348.545] -- 0:01:26
923000 -- (-1366.845) (-1362.787) (-1372.413) [-1353.968] * (-1363.560) (-1358.277) (-1360.279) [-1344.373] -- 0:01:25
924000 -- (-1356.163) (-1371.760) [-1355.809] (-1373.767) * (-1368.766) (-1355.695) (-1374.487) [-1349.905] -- 0:01:24
925000 -- (-1364.645) (-1353.080) (-1368.802) [-1364.208] * [-1349.948] (-1358.664) (-1363.713) (-1366.523) -- 0:01:23
Average standard deviation of split frequencies: 0.009065
926000 -- (-1359.729) [-1338.731] (-1362.549) (-1373.233) * (-1346.376) (-1371.407) (-1357.154) [-1346.643] -- 0:01:22
927000 -- [-1357.447] (-1354.718) (-1364.359) (-1362.344) * [-1357.645] (-1369.064) (-1369.723) (-1349.565) -- 0:01:20
928000 -- (-1362.412) (-1360.527) [-1376.327] (-1366.540) * (-1353.850) (-1366.534) [-1350.893] (-1349.381) -- 0:01:19
929000 -- (-1370.750) [-1352.782] (-1375.160) (-1355.020) * (-1354.173) (-1353.806) (-1364.620) [-1355.990] -- 0:01:18
930000 -- (-1361.196) [-1350.041] (-1371.090) (-1348.182) * (-1360.708) [-1361.092] (-1374.853) (-1343.082) -- 0:01:17
Average standard deviation of split frequencies: 0.008845
931000 -- (-1353.015) (-1356.934) (-1382.522) [-1364.323] * [-1364.970] (-1355.480) (-1360.101) (-1378.173) -- 0:01:16
932000 -- [-1347.683] (-1370.660) (-1371.127) (-1365.147) * (-1353.353) [-1360.194] (-1360.010) (-1357.247) -- 0:01:15
933000 -- (-1349.658) (-1365.081) (-1368.484) [-1357.493] * (-1377.353) [-1352.562] (-1359.945) (-1360.532) -- 0:01:14
934000 -- [-1354.312] (-1364.767) (-1347.028) (-1360.898) * (-1358.795) [-1349.592] (-1361.147) (-1358.237) -- 0:01:13
935000 -- (-1356.303) (-1371.144) (-1345.154) [-1353.601] * (-1357.974) [-1348.436] (-1351.559) (-1363.546) -- 0:01:12
Average standard deviation of split frequencies: 0.008599
936000 -- [-1340.052] (-1358.912) (-1362.416) (-1384.276) * (-1362.902) [-1356.087] (-1351.997) (-1353.845) -- 0:01:10
937000 -- [-1350.953] (-1364.772) (-1357.989) (-1381.543) * (-1358.507) [-1355.264] (-1357.525) (-1356.419) -- 0:01:09
938000 -- (-1357.365) (-1376.845) (-1367.055) [-1366.806] * (-1363.715) (-1366.339) (-1365.816) [-1356.716] -- 0:01:08
939000 -- [-1352.893] (-1364.026) (-1370.659) (-1362.778) * (-1369.094) (-1363.914) [-1349.657] (-1348.346) -- 0:01:07
940000 -- (-1349.604) [-1355.674] (-1350.267) (-1363.680) * [-1351.260] (-1356.669) (-1376.404) (-1362.895) -- 0:01:06
Average standard deviation of split frequencies: 0.008770
941000 -- (-1357.659) (-1363.196) (-1348.009) [-1359.791] * (-1352.576) (-1361.800) (-1369.397) [-1354.897] -- 0:01:05
942000 -- (-1363.972) (-1362.466) (-1360.768) [-1349.268] * (-1354.215) [-1361.410] (-1358.296) (-1353.537) -- 0:01:04
943000 -- [-1350.725] (-1372.012) (-1365.486) (-1362.124) * (-1373.406) [-1352.325] (-1352.808) (-1379.708) -- 0:01:03
944000 -- [-1351.948] (-1374.153) (-1369.698) (-1349.800) * [-1354.026] (-1349.157) (-1360.337) (-1351.705) -- 0:01:02
945000 -- (-1361.276) [-1355.710] (-1371.081) (-1360.697) * (-1379.281) (-1350.337) (-1361.601) [-1353.421] -- 0:01:00
Average standard deviation of split frequencies: 0.008880
946000 -- [-1337.126] (-1351.247) (-1368.997) (-1354.964) * (-1356.797) (-1362.879) (-1360.801) [-1354.948] -- 0:00:59
947000 -- (-1345.473) (-1360.691) (-1370.349) [-1349.858] * (-1371.662) [-1351.320] (-1357.283) (-1360.473) -- 0:00:58
948000 -- [-1353.845] (-1352.199) (-1369.897) (-1364.593) * (-1357.622) (-1359.134) (-1352.886) [-1338.590] -- 0:00:57
949000 -- (-1358.022) [-1357.271] (-1379.586) (-1354.874) * [-1362.239] (-1345.004) (-1367.272) (-1368.689) -- 0:00:56
950000 -- (-1387.424) (-1362.643) (-1359.996) [-1349.895] * (-1367.649) [-1339.653] (-1355.470) (-1382.675) -- 0:00:55
Average standard deviation of split frequencies: 0.009053
951000 -- (-1368.879) (-1367.689) [-1352.347] (-1360.688) * (-1377.711) [-1354.080] (-1363.723) (-1367.115) -- 0:00:54
952000 -- (-1355.140) (-1349.711) [-1366.223] (-1369.243) * (-1365.553) (-1350.272) [-1363.245] (-1362.551) -- 0:00:53
953000 -- [-1360.932] (-1354.854) (-1374.379) (-1366.800) * (-1349.528) (-1351.462) (-1364.836) [-1353.691] -- 0:00:52
954000 -- (-1377.446) [-1362.329] (-1365.388) (-1366.633) * [-1355.276] (-1357.139) (-1371.567) (-1359.040) -- 0:00:51
955000 -- [-1344.797] (-1356.760) (-1356.855) (-1355.282) * (-1358.798) [-1347.766] (-1357.652) (-1367.812) -- 0:00:49
Average standard deviation of split frequencies: 0.009115
956000 -- [-1347.874] (-1381.958) (-1366.407) (-1353.358) * [-1350.483] (-1357.804) (-1349.711) (-1356.865) -- 0:00:48
957000 -- [-1345.697] (-1358.624) (-1364.984) (-1358.739) * [-1348.621] (-1363.621) (-1371.691) (-1346.660) -- 0:00:47
958000 -- [-1367.084] (-1374.378) (-1371.391) (-1371.639) * [-1359.878] (-1365.026) (-1367.311) (-1349.369) -- 0:00:46
959000 -- [-1353.714] (-1372.323) (-1368.403) (-1363.620) * (-1349.809) (-1350.738) (-1368.127) [-1355.927] -- 0:00:45
960000 -- [-1348.834] (-1354.188) (-1369.307) (-1362.761) * (-1354.243) [-1349.682] (-1355.939) (-1372.413) -- 0:00:44
Average standard deviation of split frequencies: 0.009142
961000 -- [-1352.393] (-1358.082) (-1363.617) (-1364.689) * [-1364.116] (-1357.655) (-1362.700) (-1363.307) -- 0:00:43
962000 -- [-1349.957] (-1352.506) (-1359.834) (-1379.337) * (-1356.391) (-1369.372) (-1356.490) [-1361.213] -- 0:00:42
963000 -- [-1347.280] (-1377.818) (-1359.143) (-1358.151) * (-1350.733) (-1358.768) [-1355.704] (-1363.995) -- 0:00:41
964000 -- (-1351.066) (-1375.762) (-1370.418) [-1346.382] * (-1371.918) (-1354.274) [-1350.778] (-1353.971) -- 0:00:39
965000 -- [-1349.071] (-1354.848) (-1370.166) (-1360.253) * (-1375.413) (-1366.673) (-1353.329) [-1357.915] -- 0:00:38
Average standard deviation of split frequencies: 0.009028
966000 -- [-1344.843] (-1351.644) (-1377.905) (-1361.997) * (-1368.886) (-1365.437) [-1347.056] (-1362.395) -- 0:00:37
967000 -- (-1352.693) [-1339.794] (-1378.556) (-1361.668) * (-1369.772) [-1355.520] (-1364.660) (-1359.436) -- 0:00:36
968000 -- (-1364.954) [-1364.005] (-1358.258) (-1353.426) * (-1351.011) (-1356.680) (-1353.926) [-1341.016] -- 0:00:35
969000 -- [-1358.386] (-1372.246) (-1362.126) (-1353.752) * [-1354.267] (-1358.253) (-1346.572) (-1356.137) -- 0:00:34
970000 -- (-1363.179) (-1368.992) [-1354.538] (-1359.725) * (-1353.584) (-1363.869) [-1357.285] (-1368.676) -- 0:00:33
Average standard deviation of split frequencies: 0.008889
971000 -- (-1360.643) (-1351.293) (-1360.934) [-1358.922] * [-1353.890] (-1377.000) (-1369.864) (-1361.054) -- 0:00:32
972000 -- (-1352.006) (-1365.864) (-1371.035) [-1352.467] * (-1351.944) (-1377.140) [-1355.048] (-1368.282) -- 0:00:31
973000 -- (-1358.636) [-1349.114] (-1368.600) (-1361.235) * (-1375.063) (-1377.863) [-1356.332] (-1368.698) -- 0:00:29
974000 -- (-1371.129) (-1369.220) (-1371.837) [-1347.405] * (-1376.312) (-1359.063) [-1360.219] (-1364.342) -- 0:00:28
975000 -- (-1356.686) (-1364.207) [-1356.175] (-1349.587) * (-1352.394) (-1359.581) (-1362.334) [-1362.452] -- 0:00:27
Average standard deviation of split frequencies: 0.008928
976000 -- (-1358.671) (-1368.915) (-1359.048) [-1341.051] * [-1343.742] (-1370.781) (-1357.581) (-1364.264) -- 0:00:26
977000 -- (-1351.398) (-1361.579) (-1372.167) [-1349.466] * [-1358.253] (-1378.944) (-1371.117) (-1349.129) -- 0:00:25
978000 -- (-1360.474) (-1365.729) [-1357.220] (-1358.714) * (-1377.496) (-1348.055) (-1357.706) [-1346.606] -- 0:00:24
979000 -- (-1347.997) (-1369.926) (-1361.707) [-1355.800] * (-1361.163) (-1349.842) [-1354.318] (-1376.166) -- 0:00:23
980000 -- (-1354.380) (-1365.750) [-1358.049] (-1373.496) * (-1384.502) (-1368.493) (-1347.006) [-1349.288] -- 0:00:22
Average standard deviation of split frequencies: 0.008958
981000 -- [-1358.586] (-1368.156) (-1358.281) (-1353.796) * [-1349.619] (-1356.467) (-1361.265) (-1351.545) -- 0:00:21
982000 -- (-1358.878) [-1351.254] (-1369.661) (-1363.557) * (-1350.725) [-1354.439] (-1367.760) (-1369.039) -- 0:00:19
983000 -- (-1348.672) [-1347.089] (-1368.017) (-1365.860) * [-1339.503] (-1359.477) (-1358.179) (-1374.074) -- 0:00:18
984000 -- (-1368.293) [-1346.914] (-1373.746) (-1354.499) * (-1341.319) [-1344.349] (-1358.027) (-1350.801) -- 0:00:17
985000 -- (-1362.860) [-1343.728] (-1356.595) (-1364.906) * (-1362.300) (-1362.756) [-1350.437] (-1358.543) -- 0:00:16
Average standard deviation of split frequencies: 0.008998
986000 -- (-1364.661) [-1341.718] (-1362.823) (-1366.539) * (-1357.562) (-1373.473) (-1361.254) [-1349.952] -- 0:00:15
987000 -- [-1344.491] (-1341.926) (-1370.640) (-1348.251) * [-1353.578] (-1349.857) (-1375.209) (-1356.446) -- 0:00:14
988000 -- (-1377.381) (-1344.385) (-1378.055) [-1342.716] * (-1363.966) [-1348.146] (-1353.602) (-1356.529) -- 0:00:13
989000 -- (-1361.405) (-1355.844) (-1375.605) [-1350.403] * [-1346.355] (-1368.326) (-1363.600) (-1362.074) -- 0:00:12
990000 -- [-1352.507] (-1361.959) (-1355.784) (-1364.205) * (-1347.746) (-1368.119) [-1356.633] (-1359.290) -- 0:00:11
Average standard deviation of split frequencies: 0.008767
991000 -- (-1357.021) (-1360.650) [-1359.935] (-1356.361) * (-1360.770) (-1369.853) (-1373.813) [-1351.782] -- 0:00:09
992000 -- (-1362.826) (-1359.952) (-1360.717) [-1352.985] * (-1383.462) (-1365.188) [-1349.204] (-1356.436) -- 0:00:08
993000 -- [-1349.533] (-1376.278) (-1354.872) (-1361.779) * (-1374.889) [-1367.636] (-1353.141) (-1359.413) -- 0:00:07
994000 -- (-1354.544) (-1370.103) (-1371.456) [-1344.836] * (-1361.491) (-1365.148) [-1351.321] (-1372.252) -- 0:00:06
995000 -- [-1354.854] (-1361.777) (-1358.239) (-1355.908) * (-1369.635) (-1350.218) (-1361.262) [-1349.944] -- 0:00:05
Average standard deviation of split frequencies: 0.008871
996000 -- (-1372.532) [-1360.426] (-1360.240) (-1355.408) * (-1366.542) [-1343.288] (-1356.464) (-1373.485) -- 0:00:04
997000 -- (-1374.016) (-1368.772) [-1346.275] (-1372.037) * (-1358.628) (-1351.463) (-1348.088) [-1364.486] -- 0:00:03
998000 -- [-1357.671] (-1372.616) (-1352.552) (-1355.850) * (-1373.774) [-1343.356] (-1354.491) (-1361.635) -- 0:00:02
999000 -- (-1378.753) (-1365.062) (-1353.968) [-1347.558] * (-1383.317) (-1353.250) (-1350.337) [-1344.254] -- 0:00:01
1000000 -- (-1347.819) (-1370.174) [-1360.375] (-1369.604) * [-1362.804] (-1362.918) (-1364.650) (-1346.953) -- 0:00:00
Average standard deviation of split frequencies: 0.009008
Analysis completed in 18 mins 29 seconds
Analysis used 1107.89 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -1330.99
Likelihood of best state for "cold" chain of run 2 was -1330.99
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
47.5 % ( 37 %) Dirichlet(Revmat{all})
62.8 % ( 49 %) Slider(Revmat{all})
35.4 % ( 28 %) Dirichlet(Pi{all})
35.2 % ( 23 %) Slider(Pi{all})
45.5 % ( 28 %) Multiplier(Alpha{1,2})
51.5 % ( 22 %) Multiplier(Alpha{3})
67.3 % ( 48 %) Slider(Pinvar{all})
33.4 % ( 42 %) ExtSPR(Tau{all},V{all})
24.5 % ( 31 %) ExtTBR(Tau{all},V{all})
37.9 % ( 45 %) NNI(Tau{all},V{all})
29.7 % ( 29 %) ParsSPR(Tau{all},V{all})
27.0 % ( 27 %) Multiplier(V{all})
54.4 % ( 62 %) Nodeslider(V{all})
25.5 % ( 19 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
47.2 % ( 35 %) Dirichlet(Revmat{all})
63.8 % ( 53 %) Slider(Revmat{all})
33.7 % ( 31 %) Dirichlet(Pi{all})
35.3 % ( 27 %) Slider(Pi{all})
45.6 % ( 26 %) Multiplier(Alpha{1,2})
51.0 % ( 20 %) Multiplier(Alpha{3})
67.9 % ( 43 %) Slider(Pinvar{all})
33.1 % ( 25 %) ExtSPR(Tau{all},V{all})
24.4 % ( 18 %) ExtTBR(Tau{all},V{all})
38.0 % ( 37 %) NNI(Tau{all},V{all})
30.2 % ( 33 %) ParsSPR(Tau{all},V{all})
27.0 % ( 25 %) Multiplier(V{all})
54.3 % ( 52 %) Nodeslider(V{all})
25.5 % ( 28 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.54 0.22 0.07
2 | 166235 0.55 0.24
3 | 166347 167297 0.57
4 | 167186 166398 166537
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.53 0.23 0.08
2 | 166493 0.56 0.25
3 | 166877 166132 0.57
4 | 166839 166643 167016
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -1348.77
| 2 |
| 1 |
|1 1 |
| 2 2 1 |
| 2 2 1 2 1 1 2 |
| 2 1 2 1 2 2 2 11 2 2*|
| 111 122 * 122 2 1 22 1 2 22 2 2 2 1 |
| 1 1 2 1 11 2 1 1 1 11 12* 2 |
|2 1 1 2 1 1 1 1 2 1 1 1 21 2 |
| 2 1 2 11 2 22 22 1 2 1 2 1 1 |
| 2 1 1 * 2 2 * 2 1 |
| 1 2 1 1 |
| 2 2 1 1 |
| 2 2 |
| 2 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -1357.89
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1338.58 -1370.58
2 -1341.67 -1373.90
--------------------------------------
TOTAL -1339.23 -1373.24
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.430260 0.030464 1.100222 1.769659 1.413697 1253.24 1317.29 1.000
r(A<->C){all} 0.082298 0.000688 0.035784 0.134966 0.079780 686.69 758.54 1.001
r(A<->G){all} 0.212450 0.001436 0.141421 0.286823 0.211054 650.74 707.80 1.000
r(A<->T){all} 0.082534 0.000382 0.047007 0.122275 0.081177 863.56 943.95 1.000
r(C<->G){all} 0.091271 0.000918 0.037808 0.153379 0.088679 700.57 712.37 1.001
r(C<->T){all} 0.448371 0.002319 0.357866 0.542564 0.447596 690.24 720.56 1.003
r(G<->T){all} 0.083077 0.000472 0.042816 0.124467 0.081067 785.73 802.57 1.000
pi(A){all} 0.274098 0.000628 0.228468 0.327184 0.274082 1037.70 1070.54 1.002
pi(C){all} 0.172945 0.000408 0.134305 0.213147 0.171826 903.76 932.21 1.000
pi(G){all} 0.210634 0.000509 0.167689 0.255441 0.209955 856.09 926.37 1.000
pi(T){all} 0.342324 0.000670 0.292673 0.394032 0.341782 879.98 990.72 1.001
alpha{1,2} 0.840545 0.176789 0.364134 1.610549 0.736521 1072.92 1090.66 1.000
alpha{3} 1.947673 0.651975 0.789721 3.606293 1.767701 1423.45 1431.74 1.000
pinvar{all} 0.085627 0.004293 0.000025 0.214208 0.072480 1078.53 1111.34 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C67
2 -- C66
3 -- C11
4 -- C69
5 -- C68
6 -- C16
7 -- C19
8 -- C20
9 -- C78
10 -- C25
11 -- C58
12 -- C27
13 -- C60
14 -- C49
15 -- C98
16 -- C38
17 -- C61
18 -- C15
19 -- C14
20 -- C73
21 -- C88
22 -- C46
23 -- C48
24 -- C97
25 -- C32
26 -- C23
27 -- C100
28 -- C5
29 -- C35
30 -- C41
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
------------------------------------
1 -- .*****************************
2 -- .*............................
3 -- ..*...........................
4 -- ...*..........................
5 -- ....*.........................
6 -- .....*........................
7 -- ......*.......................
8 -- .......*......................
9 -- ........*.....................
10 -- .........*....................
11 -- ..........*...................
12 -- ...........*..................
13 -- ............*.................
14 -- .............*................
15 -- ..............*...............
16 -- ...............*..............
17 -- ................*.............
18 -- .................*............
19 -- ..................*...........
20 -- ...................*..........
21 -- ....................*.........
22 -- .....................*........
23 -- ......................*.......
24 -- .......................*......
25 -- ........................*.....
26 -- .........................*....
27 -- ..........................*...
28 -- ...........................*..
29 -- ............................*.
30 -- .............................*
31 -- .....***.................*....
32 -- ..*..*****....**...***..**....
33 -- ...*........*.................
34 -- ..*.******.*.***.************.
35 -- ..*..*****.*..**...***..**.*..
36 -- ........*..........*..........
37 -- ..*..*****.*..**.*****.***.**.
38 -- ....*........*........*...*...
39 -- ..*..*****.*..**.*****..**.*..
40 -- ...........*...............*..
41 -- ..*..*****.*..**.*****..**.**.
42 -- ..*..****......*...*.....*....
43 -- .................**...........
44 -- ..............*......*........
45 -- .*..............*.............
46 -- .****************************.
47 -- ..*............*..............
48 -- .**.******.*.****************.
49 -- .........*..........*.........
50 -- .....****..........*.....*....
51 -- .....***.......*.........*....
52 -- ..*..****......*...*....**....
53 -- .*.*......*.*...*.............
54 -- ...*......*.*.................
55 -- ..*.******.*.***.*************
56 -- .*........*.....*.............
57 -- .............*........*...*...
58 -- .....***......................
59 -- ......**......................
60 -- .............*............*...
61 -- .....****......*...*.....*....
62 -- .....*...................*....
63 -- .....*.*......................
64 -- .............*........*.......
65 -- .......*.................*....
66 -- ......**.................*....
67 -- ......................*...*...
68 -- .**.********.****************.
69 -- ....*.....................*...
70 -- ....*........*........*.......
71 -- ..*..*****.....*...***..**....
72 -- .....**..................*....
73 -- ......*..................*....
74 -- ....*.................*...*...
75 -- ....*.................*.......
76 -- ....*........*................
77 -- .....**.......................
78 -- .....*.*.................*....
79 -- ..*.....*......*...*..........
80 -- ....*........*............*...
81 -- .**.******.*.***.************.
82 -- ..*..*****.*..**.*.***..**.*..
83 -- ..*..*****.*..**..****..**.*..
84 -- ..*..*****....**...***..**.*..
85 -- ..*..***.......*.........*....
86 -- ..*..*****.....*...**...**....
87 -- .........*....*.....**..*.....
88 -- ..*..****......*...*.*..**....
89 -- ..*.******.*.****************.
90 -- ..*..****.....**...*.*..**....
91 -- ..*..****.....**...***..**....
92 -- ..*..*****....**...*.*..**....
93 -- ........*......*...*..........
94 -- ..*..****......*...*.*...*....
95 -- ..*.....*..........*..........
96 -- .......................*....*.
------------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
31 3002 1.000000 0.000000 1.000000 1.000000 2
32 3002 1.000000 0.000000 1.000000 1.000000 2
33 3001 0.999667 0.000471 0.999334 1.000000 2
34 3001 0.999667 0.000471 0.999334 1.000000 2
35 2985 0.994337 0.003298 0.992005 0.996669 2
36 2913 0.970353 0.005182 0.966689 0.974017 2
37 2908 0.968688 0.000000 0.968688 0.968688 2
38 2903 0.967022 0.002355 0.965356 0.968688 2
39 2900 0.966023 0.004711 0.962692 0.969354 2
40 2480 0.826116 0.007537 0.820786 0.831446 2
41 2458 0.818787 0.002827 0.816789 0.820786 2
42 2303 0.767155 0.030621 0.745503 0.788807 2
43 1959 0.652565 0.011777 0.644237 0.660893 2
44 1758 0.585610 0.020728 0.570953 0.600266 2
45 1625 0.541306 0.008009 0.535643 0.546969 2
46 1340 0.446369 0.007537 0.441039 0.451699 2
47 1289 0.429380 0.011777 0.421053 0.437708 2
48 1111 0.370087 0.008009 0.364424 0.375750 2
49 885 0.294803 0.028737 0.274484 0.315123 2
50 830 0.276482 0.014133 0.266489 0.286476 2
51 801 0.266822 0.008009 0.261159 0.272485 2
52 773 0.257495 0.022141 0.241839 0.273151 2
53 759 0.252831 0.022141 0.237175 0.268488 2
54 719 0.239507 0.007066 0.234510 0.244504 2
55 718 0.239174 0.000942 0.238508 0.239840 2
56 680 0.226516 0.010364 0.219187 0.233844 2
57 653 0.217522 0.010835 0.209860 0.225183 2
58 653 0.217522 0.020257 0.203198 0.231845 2
59 640 0.213191 0.002827 0.211193 0.215190 2
60 621 0.206862 0.008009 0.201199 0.212525 2
61 618 0.205863 0.008480 0.199867 0.211859 2
62 617 0.205530 0.008951 0.199201 0.211859 2
63 616 0.205197 0.014133 0.195203 0.215190 2
64 606 0.201865 0.014133 0.191872 0.211859 2
65 601 0.200200 0.000471 0.199867 0.200533 2
66 595 0.198201 0.008009 0.192538 0.203864 2
67 593 0.197535 0.006124 0.193205 0.201865 2
68 589 0.196203 0.002355 0.194537 0.197868 2
69 584 0.194537 0.001884 0.193205 0.195869 2
70 584 0.194537 0.004711 0.191206 0.197868 2
71 583 0.194204 0.016488 0.182545 0.205863 2
72 579 0.192871 0.008009 0.187209 0.198534 2
73 576 0.191872 0.005653 0.187875 0.195869 2
74 574 0.191206 0.007537 0.185876 0.196536 2
75 573 0.190873 0.015546 0.179880 0.201865 2
76 567 0.188874 0.017430 0.176549 0.201199 2
77 565 0.188208 0.002355 0.186542 0.189873 2
78 562 0.187209 0.009422 0.180546 0.193871 2
79 560 0.186542 0.016959 0.174550 0.198534 2
80 548 0.182545 0.016959 0.170553 0.194537 2
81 521 0.173551 0.008009 0.167888 0.179214 2
82 514 0.171219 0.010364 0.163891 0.178548 2
83 511 0.170220 0.000471 0.169887 0.170553 2
84 504 0.167888 0.004711 0.164557 0.171219 2
85 487 0.162225 0.011777 0.153897 0.170553 2
86 449 0.149567 0.005182 0.145903 0.153231 2
87 420 0.139907 0.007537 0.134577 0.145237 2
88 411 0.136909 0.007066 0.131912 0.141905 2
89 411 0.136909 0.006124 0.132578 0.141239 2
90 390 0.129913 0.013191 0.120586 0.139241 2
91 377 0.125583 0.005182 0.121919 0.129247 2
92 338 0.112592 0.003769 0.109927 0.115256 2
93 336 0.111925 0.008480 0.105929 0.117921 2
94 333 0.110926 0.008009 0.105263 0.116589 2
95 283 0.094270 0.013662 0.084610 0.103931 2
96 281 0.093604 0.014604 0.083278 0.103931 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.011967 0.000067 0.000091 0.027488 0.010085 1.001 2
length{all}[2] 0.004774 0.000023 0.000001 0.014447 0.003307 1.001 2
length{all}[3] 0.037207 0.000228 0.009665 0.067523 0.035048 1.000 2
length{all}[4] 0.004340 0.000020 0.000000 0.013280 0.002951 1.000 2
length{all}[5] 0.013274 0.000064 0.001345 0.028544 0.011741 1.000 2
length{all}[6] 0.004395 0.000020 0.000002 0.013688 0.003012 1.002 2
length{all}[7] 0.004457 0.000022 0.000001 0.013165 0.002987 1.000 2
length{all}[8] 0.004427 0.000019 0.000000 0.012977 0.003086 1.000 2
length{all}[9] 0.044092 0.000260 0.015230 0.075741 0.041878 1.000 2
length{all}[10] 0.041142 0.000258 0.014219 0.073034 0.038555 1.001 2
length{all}[11] 0.004628 0.000024 0.000001 0.014111 0.003140 1.000 2
length{all}[12] 0.005544 0.000030 0.000003 0.016321 0.003829 1.000 2
length{all}[13] 0.004334 0.000019 0.000001 0.013155 0.002960 1.000 2
length{all}[14] 0.004434 0.000020 0.000001 0.013366 0.003095 1.000 2
length{all}[15] 0.037294 0.000264 0.009774 0.070125 0.035267 1.000 2
length{all}[16] 0.025699 0.000152 0.004919 0.049610 0.023929 1.000 2
length{all}[17] 0.008171 0.000040 0.000001 0.020056 0.006817 1.000 2
length{all}[18] 0.010204 0.000056 0.000017 0.024760 0.008561 1.000 2
length{all}[19] 0.024385 0.000142 0.003977 0.047763 0.022730 1.000 2
length{all}[20] 0.012591 0.000074 0.000019 0.028646 0.010799 1.000 2
length{all}[21] 0.034863 0.000212 0.010383 0.065074 0.033027 1.000 2
length{all}[22] 0.062276 0.000407 0.026214 0.103224 0.060273 1.001 2
length{all}[23] 0.004332 0.000020 0.000001 0.013099 0.003007 1.000 2
length{all}[24] 0.014395 0.000087 0.000436 0.032723 0.012746 1.000 2
length{all}[25] 0.037355 0.000208 0.012284 0.066635 0.035168 1.001 2
length{all}[26] 0.004491 0.000020 0.000006 0.013696 0.003106 1.000 2
length{all}[27] 0.004263 0.000020 0.000001 0.013060 0.002838 1.000 2
length{all}[28] 0.010859 0.000060 0.000008 0.025797 0.009264 1.000 2
length{all}[29] 0.018411 0.000101 0.001428 0.036871 0.016894 1.000 2
length{all}[30] 0.124711 0.001392 0.058303 0.196828 0.119993 1.002 2
length{all}[31] 0.036961 0.000202 0.013233 0.065952 0.035126 1.000 2
length{all}[32] 0.313138 0.004150 0.196252 0.441092 0.307156 1.000 2
length{all}[33] 0.017890 0.000087 0.003051 0.036303 0.016213 1.001 2
length{all}[34] 0.122211 0.001031 0.065363 0.187602 0.119074 1.000 2
length{all}[35] 0.051450 0.000543 0.012846 0.100546 0.048767 1.000 2
length{all}[36] 0.021265 0.000129 0.001831 0.042554 0.019302 1.000 2
length{all}[37] 0.025928 0.000188 0.004168 0.053621 0.023789 1.000 2
length{all}[38] 0.022730 0.000173 0.002923 0.048545 0.020227 1.000 2
length{all}[39] 0.015675 0.000086 0.001388 0.033420 0.013809 1.000 2
length{all}[40] 0.035566 0.000360 0.004165 0.073423 0.032799 1.000 2
length{all}[41] 0.014212 0.000094 0.000022 0.032483 0.012277 1.000 2
length{all}[42] 0.013967 0.000084 0.000464 0.031212 0.012264 1.000 2
length{all}[43] 0.009335 0.000051 0.000002 0.022825 0.007550 1.000 2
length{all}[44] 0.021279 0.000148 0.001609 0.044594 0.019204 1.000 2
length{all}[45] 0.008041 0.000040 0.000008 0.020201 0.006512 1.000 2
length{all}[46] 0.010285 0.000059 0.000010 0.026076 0.008613 1.000 2
length{all}[47] 0.010144 0.000061 0.000007 0.025843 0.008330 1.000 2
length{all}[48] 0.008520 0.000043 0.000048 0.020961 0.006938 1.000 2
length{all}[49] 0.010224 0.000071 0.000044 0.027306 0.008363 0.999 2
length{all}[50] 0.010627 0.000073 0.000075 0.026809 0.008484 1.000 2
length{all}[51] 0.012463 0.000072 0.000407 0.029282 0.010719 0.999 2
length{all}[52] 0.008589 0.000053 0.000011 0.022628 0.006852 0.999 2
length{all}[53] 0.008675 0.000048 0.000001 0.022825 0.007058 0.999 2
length{all}[54] 0.005426 0.000031 0.000001 0.016239 0.003756 0.999 2
length{all}[55] 0.020015 0.000404 0.000028 0.059282 0.013682 1.002 2
length{all}[56] 0.007119 0.000035 0.000011 0.018608 0.005556 1.002 2
length{all}[57] 0.004499 0.000019 0.000006 0.012586 0.003247 0.999 2
length{all}[58] 0.004724 0.000022 0.000002 0.014605 0.003484 1.000 2
length{all}[59] 0.004528 0.000020 0.000002 0.013308 0.003134 0.999 2
length{all}[60] 0.004387 0.000021 0.000019 0.013382 0.003104 0.999 2
length{all}[61] 0.008668 0.000060 0.000002 0.023635 0.006360 0.998 2
length{all}[62] 0.004507 0.000020 0.000003 0.012657 0.003152 1.000 2
length{all}[63] 0.004613 0.000019 0.000005 0.013341 0.003384 0.998 2
length{all}[64] 0.004340 0.000019 0.000006 0.012755 0.002987 0.999 2
length{all}[65] 0.004401 0.000021 0.000000 0.013602 0.002995 0.999 2
length{all}[66] 0.004656 0.000022 0.000015 0.013728 0.003092 0.998 2
length{all}[67] 0.004212 0.000016 0.000006 0.012593 0.002858 0.999 2
length{all}[68] 0.006123 0.000031 0.000005 0.018636 0.004308 1.002 2
length{all}[69] 0.004397 0.000020 0.000009 0.013054 0.003106 0.999 2
length{all}[70] 0.004350 0.000023 0.000012 0.014575 0.002577 0.999 2
length{all}[71] 0.017396 0.000146 0.000183 0.041846 0.014871 1.000 2
length{all}[72] 0.004525 0.000021 0.000020 0.014228 0.003002 0.999 2
length{all}[73] 0.004603 0.000023 0.000001 0.013920 0.003069 0.999 2
length{all}[74] 0.004467 0.000020 0.000019 0.012949 0.003013 0.998 2
length{all}[75] 0.004342 0.000020 0.000003 0.013152 0.003029 0.998 2
length{all}[76] 0.004588 0.000021 0.000004 0.014122 0.002956 1.001 2
length{all}[77] 0.004703 0.000027 0.000002 0.014179 0.003088 1.001 2
length{all}[78] 0.004456 0.000021 0.000021 0.013165 0.003114 1.003 2
length{all}[79] 0.010433 0.000079 0.000023 0.026186 0.008199 1.013 2
length{all}[80] 0.004495 0.000019 0.000002 0.013357 0.003047 1.001 2
length{all}[81] 0.005429 0.000028 0.000013 0.015917 0.003950 0.998 2
length{all}[82] 0.008731 0.000057 0.000023 0.023053 0.007029 1.000 2
length{all}[83] 0.008166 0.000054 0.000012 0.021047 0.005947 0.998 2
length{all}[84] 0.012151 0.000057 0.000688 0.025925 0.011004 0.999 2
length{all}[85] 0.007563 0.000051 0.000016 0.023070 0.005578 0.998 2
length{all}[86] 0.013241 0.000122 0.000097 0.035869 0.010497 1.000 2
length{all}[87] 0.011431 0.000078 0.000062 0.029064 0.009235 0.999 2
length{all}[88] 0.010119 0.000062 0.000133 0.022966 0.008356 0.999 2
length{all}[89] 0.004752 0.000022 0.000001 0.014578 0.003202 0.998 2
length{all}[90] 0.009058 0.000061 0.000058 0.024081 0.006814 1.016 2
length{all}[91] 0.011809 0.000121 0.000004 0.035310 0.008354 1.005 2
length{all}[92] 0.011066 0.000095 0.000002 0.030114 0.007731 1.003 2
length{all}[93] 0.009632 0.000072 0.000039 0.024683 0.007848 0.997 2
length{all}[94] 0.010843 0.000068 0.000091 0.028425 0.008804 0.999 2
length{all}[95] 0.006349 0.000046 0.000010 0.018481 0.004286 0.997 2
length{all}[96] 0.005722 0.000035 0.000007 0.017295 0.004031 0.997 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.009008
Maximum standard deviation of split frequencies = 0.030621
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.016
Clade credibility values:
/--------------------------------------------------------------------- C67 (1)
|
|--------------------------------------------------------------------- C58 (11)
|
|--------------------------------------------------------------------- C41 (30)
|
| /--------------- C11 (3)
| |
| | /-------- C16 (6)
| | |
| | |-------- C19 (7)
| |--100-+
| | |-------- C20 (8)
| /---77--+ |
| | | \-------- C23 (26)
| | |
| | | /-------- C78 (9)
| | |--97--+
| | | \-------- C73 (20)
| | |
| | \--------------- C38 (16)
| |
| /--100--+----------------------- C25 (10)
| | |
| | | /-------- C98 (15)
| | |------59------+
| | | \-------- C46 (22)
| | |
| /--99--+ |----------------------- C88 (21)
+ | | |
| | | \----------------------- C32 (25)
| | |
| | | /-------- C27 (12)
| /---97--+ \----------83----------+
| | | \-------- C5 (28)
| | |
| | | /-------- C15 (18)
| /---82--+ \--------------65-------------+
| | | \-------- C14 (19)
| | |
| /--97--+ \---------------------------------------------- C35 (29)
| | |
| | \------------------------------------------------------ C97 (24)
| |
|--100--+ /-------- C68 (5)
| | |
| | |-------- C49 (14)
| \-------------------------97-------------------------+
| |-------- C48 (23)
| |
| \-------- C100 (27)
|
| /-------- C69 (4)
|-----------------------------100----------------------------+
| \-------- C60 (13)
|
| /-------- C66 (2)
\-----------------------------54-----------------------------+
\-------- C61 (17)
Phylogram (based on average branch lengths):
/- C67 (1)
|
| C58 (11)
|
|-------------- C41 (30)
|
| /---- C11 (3)
| |
| | /- C16 (6)
| | |
| | |- C19 (7)
| |---+
| | |- C20 (8)
| /+ |
| || \- C23 (26)
| ||
| || /----- C78 (9)
| ||-+
| || \-- C73 (20)
| ||
| |\--- C38 (16)
| |
| /-----------------------------------+---- C25 (10)
| | |
| | | /---- C98 (15)
| | |-+
| | | \------- C46 (22)
| | |
| /----+ |---- C88 (21)
+ | | |
| | | \---- C32 (25)
| | |
| | | / C27 (12)
| /-+ \---+
| | | \- C5 (28)
| | |
| | |- C15 (18)
| /+ |
| || \--- C14 (19)
| ||
| /--+\-- C35 (29)
| | |
| | \- C97 (24)
| |
|-------------+ /- C68 (5)
| | |
| | | C49 (14)
| \-+
| | C48 (23)
| |
| \ C100 (27)
|
| / C69 (4)
|-+
| \ C60 (13)
|
|/ C66 (2)
\+
\- C61 (17)
|----------| 0.100 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3002 trees sampled):
50 % credible set contains 1501 trees
90 % credible set contains 2702 trees
95 % credible set contains 2852 trees
99 % credible set contains 2972 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Wed Nov 09 22:46:53 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Thu Nov 10 16:45:50 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/codeml,A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C49 255 sites
reading seq# 2 C38 255 sites
reading seq# 3 C98 255 sites
reading seq# 4 C58 255 sites
reading seq# 5 C15 255 sites
reading seq# 6 C61 255 sites
reading seq# 7 C14 255 sites
reading seq# 8 C60 255 sites
reading seq# 9 C5 255 sites
reading seq#10 C73 255 sites
reading seq#11 C66 255 sites
reading seq#12 C67 255 sites
reading seq#13 C11 255 sites
reading seq#14 C88 255 sites
reading seq#15 C46 255 sites
reading seq#16 C68 255 sites
reading seq#17 C69 255 sites
reading seq#18 C16 255 sites
reading seq#19 C97 255 sites
reading seq#20 C48 255 sites
reading seq#21 C20 255 sites
reading seq#22 C19 255 sites
reading seq#23 C23 255 sites
reading seq#24 C100 255 sites
reading seq#25 C32 255 sites
reading seq#26 C25 255 sites
reading seq#27 C78 255 sites
reading seq#28 C41 255 sites
reading seq#29 C35 255 sites
reading seq#30 C27 255 sitesns = 30 ls = 255
Reading sequences, sequential format..
Reading seq # 1: C49
Reading seq # 2: C38
Reading seq # 3: C98
Reading seq # 4: C58
Reading seq # 5: C15
Reading seq # 6: C61
Reading seq # 7: C14
Reading seq # 8: C60
Reading seq # 9: C5
Reading seq #10: C73
Reading seq #11: C66
Reading seq #12: C67
Reading seq #13: C11
Reading seq #14: C88
Reading seq #15: C46
Reading seq #16: C68
Reading seq #17: C69
Reading seq #18: C16
Reading seq #19: C97
Reading seq #20: C48
Reading seq #21: C20
Reading seq #22: C19
Reading seq #23: C23
Reading seq #24: C100
Reading seq #25: C32
Reading seq #26: C25
Reading seq #27: C78
Reading seq #28: C41
Reading seq #29: C35
Reading seq #30: C27
Sites with gaps or missing data are removed.
42 ambiguity characters in seq. 1
45 ambiguity characters in seq. 2
45 ambiguity characters in seq. 3
39 ambiguity characters in seq. 4
21 ambiguity characters in seq. 5
39 ambiguity characters in seq. 6
42 ambiguity characters in seq. 7
39 ambiguity characters in seq. 8
21 ambiguity characters in seq. 9
45 ambiguity characters in seq. 10
39 ambiguity characters in seq. 11
39 ambiguity characters in seq. 12
45 ambiguity characters in seq. 13
45 ambiguity characters in seq. 14
45 ambiguity characters in seq. 15
42 ambiguity characters in seq. 16
39 ambiguity characters in seq. 17
45 ambiguity characters in seq. 18
21 ambiguity characters in seq. 19
42 ambiguity characters in seq. 20
45 ambiguity characters in seq. 21
45 ambiguity characters in seq. 22
45 ambiguity characters in seq. 23
42 ambiguity characters in seq. 24
45 ambiguity characters in seq. 25
45 ambiguity characters in seq. 26
45 ambiguity characters in seq. 27
132 ambiguity characters in seq. 28
21 ambiguity characters in seq. 29
42 ambiguity characters in seq. 30
44 sites are removed. 1 2 3 4 5 6 7 42 43 44 45 46 47 48 49 50 51 52 53 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85
Sequences read..
Counting site patterns.. 0:00
Compressing, 41 patterns at 41 / 41 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 41 patterns at 41 / 41 sites (100.0%), 0:00
Counting codons..
3480 bytes for distance
40016 bytes for conP
3608 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(12, 4, 28, (((((((13, (18, 22, 21, 23), (27, 10), 2), 26, (3, 15), 14, 25), (30, 9)), (5, 7)), 29), 19), (16, 1, 20, 24)), (17, 8), (11, 6)); MP score: 121
320128 bytes for conP, adjusted
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
35
0.037906 0.067889 0.058655 0.048668 0.039314 0.086204 0.064697 0.060594 0.064628 0.044398 0.031308 0.032867 0.026202 0.086990 0.108490 0.012645 0.029086 0.036551 0.076757 0.023169 0.054542 0.050096 0.074350 0.016391 0.104009 0.042558 0.052875 0.026293 0.058205 0.088303 0.103535 0.071321 0.081046 0.086597 0.071168 0.029376 0.073087 0.051983 0.048257 0.083807 0.054155 0.065497 0.016110 0.013833 0.029874 0.300000 0.850621 0.426982
ntime & nrate & np: 45 2 48
Bounds (np=48):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 10.355709
np = 48
lnL0 = -1020.543565
Iterating by ming2
Initial: fx= 1020.543565
x= 0.03791 0.06789 0.05865 0.04867 0.03931 0.08620 0.06470 0.06059 0.06463 0.04440 0.03131 0.03287 0.02620 0.08699 0.10849 0.01265 0.02909 0.03655 0.07676 0.02317 0.05454 0.05010 0.07435 0.01639 0.10401 0.04256 0.05287 0.02629 0.05821 0.08830 0.10353 0.07132 0.08105 0.08660 0.07117 0.02938 0.07309 0.05198 0.04826 0.08381 0.05416 0.06550 0.01611 0.01383 0.02987 0.30000 0.85062 0.42698
1 h-m-p 0.0000 0.0003 758.7964 +++ 932.748332 m 0.0003 54 | 1/48
2 h-m-p 0.0000 0.0000 294.2355 ++ 931.062224 m 0.0000 105 | 2/48
3 h-m-p 0.0000 0.0002 315.0690 ++ 921.464134 m 0.0002 156 | 3/48
4 h-m-p 0.0000 0.0000 8628.5823 ++ 906.410935 m 0.0000 207 | 4/48
5 h-m-p 0.0000 0.0000 838.7139 ++ 903.821186 m 0.0000 258 | 5/48
6 h-m-p 0.0000 0.0000 384.2152 ++ 902.841510 m 0.0000 309 | 6/48
7 h-m-p 0.0000 0.0000 258.0727 ++ 901.999554 m 0.0000 360 | 7/48
8 h-m-p 0.0000 0.0002 187.4660 ++ 898.224624 m 0.0002 411 | 8/48
9 h-m-p 0.0000 0.0000 817.9403 ++ 896.974730 m 0.0000 462 | 9/48
10 h-m-p 0.0000 0.0000 1849.8636 ++ 895.135020 m 0.0000 513 | 10/48
11 h-m-p 0.0000 0.0000 1316.4942 ++ 894.870318 m 0.0000 564 | 11/48
12 h-m-p 0.0000 0.0000 1868.8303 ++ 892.945183 m 0.0000 615 | 12/48
13 h-m-p 0.0001 0.0023 97.0004 ++YCYCCC 883.000265 5 0.0018 676 | 12/48
14 h-m-p 0.0006 0.0031 53.3702 CYCCC 880.592587 4 0.0011 734 | 11/48
15 h-m-p 0.0003 0.0016 43.8679 YCYCCC 879.459071 5 0.0008 793 | 11/48
16 h-m-p 0.0006 0.0031 25.3869 YCCCC 878.669141 4 0.0015 851 | 11/48
17 h-m-p 0.0001 0.0005 57.7805 +YC 878.228846 1 0.0005 904 | 11/48
18 h-m-p 0.0000 0.0000 11.7998 ++ 878.211780 m 0.0000 955 | 12/48
19 h-m-p 0.0000 0.0028 34.6076 +++CYCCCC 877.181113 5 0.0012 1018 | 12/48
20 h-m-p 0.0002 0.0009 62.0264 +YCYCCC 876.230384 5 0.0005 1078 | 12/48
21 h-m-p 0.0007 0.0037 32.7824 +YCYCCC 873.387844 5 0.0021 1138 | 12/48
22 h-m-p 0.0002 0.0009 72.8513 +YYCCC 871.840519 4 0.0006 1196 | 12/48
23 h-m-p 0.0001 0.0004 83.9477 ++ 870.830384 m 0.0004 1247 | 12/48
24 h-m-p -0.0000 -0.0000 52.2265
h-m-p: -8.05249071e-21 -4.02624536e-20 5.22264812e+01 870.830384
.. | 12/48
25 h-m-p 0.0000 0.0019 243.0164 ++++ 842.879271 m 0.0019 1348 | 11/48
26 h-m-p 0.0000 0.0000 47977.7720
h-m-p: 1.48449573e-21 7.42247863e-21 4.79777720e+04 842.879271
.. | 11/48
27 h-m-p 0.0000 0.0002 234730.5920 -CYCYCYC 835.136271 6 0.0000 1458 | 11/48
28 h-m-p 0.0000 0.0000 160.9519 ++ 834.966738 m 0.0000 1509 | 12/48
29 h-m-p 0.0000 0.0002 523.5334 +++ 823.459730 m 0.0002 1561 | 12/48
30 h-m-p 0.0000 0.0002 365.1399 +YCYCCC 818.776273 5 0.0002 1621 | 12/48
31 h-m-p 0.0002 0.0008 133.7462 ++ 814.276612 m 0.0008 1672 | 12/48
32 h-m-p 0.0000 0.0000 107.5349
h-m-p: 6.22868893e-21 3.11434446e-20 1.07534937e+02 814.276612
.. | 12/48
33 h-m-p 0.0000 0.0028 131.7968 +++YYC 810.119126 2 0.0009 1776 | 12/48
34 h-m-p 0.0004 0.0020 78.0409 ++ 804.854553 m 0.0020 1827 | 12/48
35 h-m-p 0.0006 0.0029 216.1785 +YYYCC 795.160905 4 0.0022 1884 | 12/48
36 h-m-p 0.0003 0.0013 166.4184 ++ 789.650650 m 0.0013 1935 | 13/48
37 h-m-p 0.0006 0.0031 140.6366 YCC 786.374006 2 0.0013 1989 | 13/48
38 h-m-p 0.0004 0.0019 79.0133 +YYYCCC 784.357496 5 0.0013 2048 | 13/48
39 h-m-p 0.0008 0.0041 33.3107 YCCCC 783.627901 4 0.0021 2106 | 13/48
40 h-m-p 0.0002 0.0011 38.3508 ++ 783.106595 m 0.0011 2157 | 14/48
41 h-m-p 0.0025 0.0127 12.7715 YCCCC 782.479683 4 0.0047 2215 | 14/48
42 h-m-p 0.0007 0.0036 22.4113 CCCC 782.259901 3 0.0012 2272 | 14/48
43 h-m-p 0.0035 0.0218 7.7818 CYC 782.179947 2 0.0034 2326 | 14/48
44 h-m-p 0.0019 0.0297 14.1807 CYC 782.114469 2 0.0020 2380 | 14/48
45 h-m-p 0.0035 0.0173 7.5772 YCC 782.076610 2 0.0024 2434 | 14/48
46 h-m-p 0.0022 0.0519 8.2145 YC 781.994284 1 0.0046 2486 | 14/48
47 h-m-p 0.0035 0.0180 10.6985 YCC 781.943370 2 0.0024 2540 | 14/48
48 h-m-p 0.0063 0.0671 4.0200 CCC 781.894386 2 0.0049 2595 | 14/48
49 h-m-p 0.0039 0.0268 5.0295 YCCC 781.728282 3 0.0083 2651 | 14/48
50 h-m-p 0.0028 0.0338 14.9707 YC 781.298961 1 0.0064 2703 | 14/48
51 h-m-p 0.0026 0.0129 19.9193 YCCC 780.668442 3 0.0056 2759 | 14/48
52 h-m-p 0.0010 0.0052 42.4446 +YCCC 779.910527 3 0.0029 2816 | 14/48
53 h-m-p 0.0017 0.0084 41.0944 YCCCC 779.229202 4 0.0032 2874 | 14/48
54 h-m-p 0.0018 0.0091 19.7077 CCCC 779.007173 3 0.0025 2931 | 14/48
55 h-m-p 0.0071 0.0355 5.3339 YCC 778.942091 2 0.0042 2985 | 14/48
56 h-m-p 0.0029 0.0392 7.7372 CCC 778.881620 2 0.0033 3040 | 14/48
57 h-m-p 0.0035 0.0439 7.3606 CCC 778.803240 2 0.0047 3095 | 14/48
58 h-m-p 0.0030 0.0499 11.6634 +CC 778.532547 1 0.0107 3149 | 14/48
59 h-m-p 0.0031 0.0153 27.2358 YCCC 778.200849 3 0.0055 3205 | 14/48
60 h-m-p 0.0011 0.0053 29.5913 YC 778.051613 1 0.0023 3257 | 14/48
61 h-m-p 0.0019 0.0096 10.5832 YCC 777.961236 2 0.0040 3311 | 14/48
62 h-m-p 0.0030 0.0148 3.1705 YC 777.917511 1 0.0059 3363 | 14/48
63 h-m-p 0.0006 0.0028 5.1948 ++ 777.844587 m 0.0028 3414 | 14/48
64 h-m-p 0.0028 0.1584 5.1122 ++YYCC 777.170665 3 0.0350 3471 | 14/48
65 h-m-p 0.0040 0.0202 30.7275 CCC 776.463690 2 0.0062 3526 | 14/48
66 h-m-p 0.0134 0.0668 6.0052 YCC 776.358373 2 0.0076 3580 | 14/48
67 h-m-p 0.1026 0.5128 0.4430 +YC 775.929969 1 0.4524 3633 | 14/48
68 h-m-p 0.0003 0.0013 22.5064 ++ 775.812501 m 0.0013 3718 | 15/48
69 h-m-p 0.0034 0.0693 8.4846 CC 775.754658 1 0.0049 3771 | 15/48
70 h-m-p 0.0618 0.7808 0.6715 YC 775.731093 1 0.0386 3823 | 15/48
71 h-m-p 0.0163 1.5800 1.5914 ++CCC 775.245384 2 0.2312 3913 | 15/48
72 h-m-p 1.0325 5.1627 0.0832 YCC 775.161068 2 0.7239 3967 | 15/48
73 h-m-p 0.7405 8.0000 0.0813 YC 775.126659 1 1.3643 4052 | 15/48
74 h-m-p 1.6000 8.0000 0.0259 YC 775.120774 1 1.1326 4137 | 15/48
75 h-m-p 1.6000 8.0000 0.0033 C 775.119810 0 1.4876 4221 | 15/48
76 h-m-p 1.6000 8.0000 0.0026 CC 775.119370 1 2.1490 4307 | 15/48
77 h-m-p 1.6000 8.0000 0.0007 C 775.119215 0 1.6336 4391 | 15/48
78 h-m-p 0.7888 8.0000 0.0014 Y 775.119185 0 1.3927 4475 | 15/48
79 h-m-p 1.6000 8.0000 0.0004 C 775.119183 0 1.2871 4559 | 15/48
80 h-m-p 1.6000 8.0000 0.0002 C 775.119183 0 1.6000 4643 | 15/48
81 h-m-p 1.6000 8.0000 0.0001 C 775.119182 0 1.5255 4727 | 15/48
82 h-m-p 1.6000 8.0000 0.0000 Y 775.119182 0 1.2148 4811 | 15/48
83 h-m-p 1.6000 8.0000 0.0000 C 775.119182 0 1.6000 4895 | 15/48
84 h-m-p 1.6000 8.0000 0.0000 Y 775.119182 0 1.6000 4979 | 15/48
85 h-m-p 1.6000 8.0000 0.0000 Y 775.119182 0 0.4000 5063 | 15/48
86 h-m-p 0.3997 8.0000 0.0000 ---C 775.119182 0 0.0013 5150
Out..
lnL = -775.119182
5151 lfun, 15453 eigenQcodon, 463590 P(t)
end of tree file.
Time used: 2:11
Model 2: PositiveSelection
TREE # 1
(12, 4, 28, (((((((13, (18, 22, 21, 23), (27, 10), 2), 26, (3, 15), 14, 25), (30, 9)), (5, 7)), 29), 19), (16, 1, 20, 24)), (17, 8), (11, 6)); MP score: 121
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
35
0.077839 0.071758 0.089167 0.083227 0.012978 0.015572 0.050288 0.088961 0.049522 0.057636 0.014775 0.035935 0.013392 0.103775 0.059357 0.071296 0.065316 0.100580 0.074680 0.081126 0.100037 0.053693 0.048647 0.043048 0.104026 0.012785 0.098107 0.063502 0.045124 0.077923 0.059809 0.041873 0.042551 0.057005 0.026582 0.078664 0.040733 0.078971 0.089661 0.019898 0.085367 0.042446 0.023107 0.104944 0.075176 3.311090 1.245310 0.156244 0.299738 1.372222
ntime & nrate & np: 45 3 50
Bounds (np=50):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 3.520476
np = 50
lnL0 = -938.583879
Iterating by ming2
Initial: fx= 938.583879
x= 0.07784 0.07176 0.08917 0.08323 0.01298 0.01557 0.05029 0.08896 0.04952 0.05764 0.01478 0.03593 0.01339 0.10378 0.05936 0.07130 0.06532 0.10058 0.07468 0.08113 0.10004 0.05369 0.04865 0.04305 0.10403 0.01279 0.09811 0.06350 0.04512 0.07792 0.05981 0.04187 0.04255 0.05701 0.02658 0.07866 0.04073 0.07897 0.08966 0.01990 0.08537 0.04245 0.02311 0.10494 0.07518 3.31109 1.24531 0.15624 0.29974 1.37222
1 h-m-p 0.0000 0.0004 708.3065 +++ 865.444144 m 0.0004 56 | 1/50
2 h-m-p 0.0002 0.0008 190.3396 ++ 841.291658 m 0.0008 109 | 2/50
3 h-m-p 0.0000 0.0000 228.4283 ++ 840.963711 m 0.0000 162 | 3/50
4 h-m-p 0.0000 0.0000 1672.9033 ++ 835.377935 m 0.0000 215 | 4/50
5 h-m-p 0.0000 0.0000 30793.1091 ++ 832.761514 m 0.0000 268 | 5/50
6 h-m-p 0.0000 0.0000 552.2408 ++ 831.599452 m 0.0000 321 | 6/50
7 h-m-p 0.0000 0.0001 350.3994 ++ 828.766754 m 0.0001 374 | 7/50
8 h-m-p 0.0000 0.0000 473.6077 ++ 828.055475 m 0.0000 427 | 8/50
9 h-m-p 0.0000 0.0000 1386.8879 ++ 826.724384 m 0.0000 480 | 9/50
10 h-m-p 0.0000 0.0000 494.9274 ++ 825.579201 m 0.0000 533 | 10/50
11 h-m-p 0.0000 0.0000 753.3227 ++ 825.376254 m 0.0000 586 | 11/50
12 h-m-p 0.0000 0.0000 292.9312 ++ 825.190420 m 0.0000 639 | 12/50
13 h-m-p 0.0000 0.0078 45.7338 +++CYCCC 821.932555 4 0.0041 702 | 12/50
14 h-m-p 0.0017 0.0085 59.7606 YCCCC 819.415383 4 0.0035 762 | 12/50
15 h-m-p 0.0006 0.0030 92.6203 ++ 814.583313 m 0.0030 815 | 13/50
16 h-m-p 0.0006 0.0030 47.8939 ++ 812.646723 m 0.0030 868 | 13/50
17 h-m-p 0.0005 0.0024 94.3921 +YCYCCC 811.329424 5 0.0013 930 | 13/50
18 h-m-p 0.0002 0.0010 141.7274 YCCC 810.851385 3 0.0004 988 | 13/50
19 h-m-p 0.0003 0.0014 56.2505 YC 810.545897 1 0.0007 1042 | 13/50
20 h-m-p 0.0003 0.0015 33.1904 ++ 810.168124 m 0.0015 1095 | 13/50
21 h-m-p 0.0016 0.0145 32.0975 +YC 808.986680 1 0.0048 1150 | 13/50
22 h-m-p 0.0010 0.0048 80.8516 +YYCCCC 806.425530 5 0.0033 1212 | 13/50
23 h-m-p 0.0001 0.0004 253.6035 ++ 805.132080 m 0.0004 1265 | 13/50
24 h-m-p 0.0003 0.0015 133.1123 +YC 803.588593 1 0.0014 1320 | 13/50
25 h-m-p 0.0019 0.0094 46.0427 CCCCC 802.820108 4 0.0022 1381 | 13/50
26 h-m-p 0.0010 0.0050 16.6129 CCC 802.684756 2 0.0016 1438 | 13/50
27 h-m-p 0.0026 0.0150 10.1779 YC 802.628132 1 0.0015 1492 | 13/50
28 h-m-p 0.0041 0.0321 3.8559 CYC 802.576511 2 0.0037 1548 | 13/50
29 h-m-p 0.0017 0.0351 8.3508 +CCC 802.309132 2 0.0074 1606 | 13/50
30 h-m-p 0.0019 0.0093 31.2215 +YCC 801.580583 2 0.0051 1663 | 13/50
31 h-m-p 0.0017 0.0083 34.9834 YCC 801.394336 2 0.0013 1719 | 13/50
32 h-m-p 0.0043 0.0216 7.7115 CYC 801.267912 2 0.0042 1775 | 13/50
33 h-m-p 0.0023 0.0116 12.2661 +CC 800.743369 1 0.0096 1831 | 13/50
34 h-m-p 0.0024 0.0179 49.0018 +CCC 798.368016 2 0.0108 1889 | 13/50
35 h-m-p 0.0023 0.0116 42.1845 YCCC 797.577519 3 0.0040 1947 | 13/50
36 h-m-p 0.0027 0.0137 4.2992 YCC 797.494177 2 0.0046 2003 | 13/50
37 h-m-p 0.0046 0.0229 3.8425 +YC 797.077324 1 0.0199 2058 | 12/50
38 h-m-p 0.0006 0.0028 25.5300 ++ 796.292051 m 0.0028 2111 | 13/50
39 h-m-p 0.0001 0.0006 105.9836 ++ 795.561514 m 0.0006 2164 | 13/50
40 h-m-p 0.0010 0.0048 30.9152 ++ 794.622195 m 0.0048 2217 | 14/50
41 h-m-p 0.0160 0.0798 4.2499 YCC 794.527381 2 0.0071 2273 | 14/50
42 h-m-p 0.0078 0.0738 3.8586 +YCYYCCC 793.515798 6 0.0452 2336 | 14/50
43 h-m-p 0.0024 0.0120 16.1858 CCCC 793.193304 3 0.0041 2395 | 14/50
44 h-m-p 0.0190 0.1154 3.5011 +YYCCC 791.693333 4 0.0588 2455 | 14/50
45 h-m-p 0.0031 0.0283 66.4524 +YCYC 788.001729 3 0.0088 2513 | 14/50
46 h-m-p 0.3023 1.5116 1.0865 CCC 785.685304 2 0.4266 2570 | 14/50
47 h-m-p 0.1978 0.9892 0.2966 ++ 782.043689 m 0.9892 2623 | 14/50
48 h-m-p 0.0000 0.0000 0.4289
h-m-p: 1.55344050e-17 7.76720248e-17 4.28892017e-01 782.043689
.. | 14/50
49 h-m-p 0.0000 0.0006 45.1610 ++++ 781.121522 m 0.0006 2800 | 15/50
50 h-m-p 0.0009 0.0051 31.4743 YCCCC 780.280056 4 0.0022 2860 | 15/50
51 h-m-p 0.0008 0.0041 47.5475 CCY 779.768527 2 0.0012 2917 | 15/50
52 h-m-p 0.0014 0.0070 42.2028 YCCC 779.061539 3 0.0024 2975 | 15/50
53 h-m-p 0.0003 0.0015 50.2921 +CYC 778.612546 2 0.0013 3032 | 15/50
54 h-m-p 0.0006 0.0030 67.9197 +YCCC 777.997907 3 0.0015 3091 | 15/50
55 h-m-p 0.0014 0.0084 74.0764 CCCC 777.304377 3 0.0018 3150 | 15/50
56 h-m-p 0.0012 0.0058 19.5243 CCCC 777.160111 3 0.0017 3209 | 15/50
57 h-m-p 0.0005 0.0023 21.9655 +YC 777.072233 1 0.0012 3264 | 15/50
58 h-m-p 0.0026 0.0214 10.6888 CYC 777.005458 2 0.0025 3320 | 15/50
59 h-m-p 0.0021 0.0103 9.2907 CCC 776.965755 2 0.0022 3377 | 15/50
60 h-m-p 0.0008 0.0041 3.9463 ++ 776.945243 m 0.0041 3430 | 15/50
61 h-m-p 0.0000 0.0000 3.7455
h-m-p: 9.54105241e-19 4.77052620e-18 3.74548870e+00 776.945243
.. | 15/50
62 h-m-p 0.0000 0.0042 26.5601 +++CCC 776.683307 2 0.0007 3540 | 15/50
63 h-m-p 0.0016 0.0112 12.0275 CYC 776.584982 2 0.0016 3596 | 15/50
64 h-m-p 0.0002 0.0008 17.3604 ++ 776.513455 m 0.0008 3649 | 16/50
65 h-m-p 0.0018 0.0470 7.3400 YC 776.468367 1 0.0029 3703 | 16/50
66 h-m-p 0.0020 0.0102 10.2400 CCCC 776.422687 3 0.0025 3762 | 16/50
67 h-m-p 0.0014 0.0261 18.7957 +CCCC 776.239633 3 0.0060 3822 | 16/50
68 h-m-p 0.0026 0.0221 43.0803 CCC 776.103022 2 0.0021 3879 | 16/50
69 h-m-p 0.0017 0.0086 42.8209 CCCC 775.917272 3 0.0027 3938 | 16/50
70 h-m-p 0.0028 0.0178 41.5505 CCC 775.741100 2 0.0029 3995 | 16/50
71 h-m-p 0.0025 0.0125 16.3050 YYC 775.697762 2 0.0019 4050 | 16/50
72 h-m-p 0.0024 0.0319 13.3954 YCC 775.676005 2 0.0014 4106 | 16/50
73 h-m-p 0.0036 0.0357 5.1805 YC 775.664298 1 0.0024 4160 | 16/50
74 h-m-p 0.0024 0.0258 5.2948 CYC 775.655603 2 0.0021 4216 | 16/50
75 h-m-p 0.0022 0.0915 5.0328 YC 775.638371 1 0.0051 4270 | 16/50
76 h-m-p 0.0042 0.2831 6.2272 YCC 775.610236 2 0.0076 4326 | 16/50
77 h-m-p 0.0048 0.0831 9.9672 CC 775.569503 1 0.0072 4381 | 16/50
78 h-m-p 0.0050 0.0948 14.2388 YC 775.505523 1 0.0082 4435 | 16/50
79 h-m-p 0.0050 0.0940 23.3188 C 775.443313 0 0.0050 4488 | 16/50
80 h-m-p 0.0098 0.0517 11.9200 YYC 775.395001 2 0.0077 4543 | 16/50
81 h-m-p 0.0024 0.0738 38.2532 YC 775.280123 1 0.0060 4597 | 16/50
82 h-m-p 0.0083 0.1024 27.5979 CCC 775.184871 2 0.0069 4654 | 16/50
83 h-m-p 0.0064 0.0319 23.5930 YCC 775.152385 2 0.0028 4710 | 16/50
84 h-m-p 0.0214 0.3055 3.0641 YC 775.147755 1 0.0035 4764 | 16/50
85 h-m-p 0.0372 0.4642 0.2871 YC 775.147350 1 0.0060 4818 | 16/50
86 h-m-p 0.0045 1.1095 0.3854 CC 775.146740 1 0.0070 4907 | 16/50
87 h-m-p 0.0055 0.7877 0.4914 +YC 775.144930 1 0.0149 4996 | 16/50
88 h-m-p 0.0041 0.5384 1.8056 +CC 775.133754 1 0.0243 5086 | 16/50
89 h-m-p 0.0053 0.1255 8.3267 C 775.122541 0 0.0053 5139 | 16/50
90 h-m-p 0.0556 0.2778 0.7337 -C 775.122099 0 0.0032 5193 | 16/50
91 h-m-p 0.0066 0.7839 0.3608 YC 775.121964 1 0.0031 5281 | 16/50
92 h-m-p 0.0140 4.2911 0.0813 C 775.121905 0 0.0128 5368 | 16/50
93 h-m-p 0.0160 8.0000 0.0878 ++C 775.120580 0 0.2688 5457 | 16/50
94 h-m-p 0.0210 2.0865 1.1219 YC 775.119924 1 0.0107 5545 | 16/50
95 h-m-p 0.2839 8.0000 0.0423 C 775.119854 0 0.0574 5598 | 16/50
96 h-m-p 0.0160 8.0000 0.2814 +CC 775.119244 1 0.0773 5688 | 16/50
97 h-m-p 1.6000 8.0000 0.0135 ---Y 775.119242 0 0.0110 5778 | 16/50
98 h-m-p 0.0327 8.0000 0.0046 ++CC 775.119184 1 0.8351 5869 | 16/50
99 h-m-p 1.6000 8.0000 0.0002 Y 775.119183 0 1.0585 5956 | 16/50
100 h-m-p 1.6000 8.0000 0.0000 Y 775.119182 0 1.1302 6043 | 16/50
101 h-m-p 1.6000 8.0000 0.0000 Y 775.119182 0 1.1316 6130 | 16/50
102 h-m-p 1.6000 8.0000 0.0000 Y 775.119182 0 1.0956 6217 | 16/50
103 h-m-p 1.6000 8.0000 0.0000 C 775.119182 0 0.4000 6304 | 16/50
104 h-m-p 1.3198 8.0000 0.0000 ----------C 775.119182 0 0.0000 6401
Out..
lnL = -775.119182
6402 lfun, 25608 eigenQcodon, 864270 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -785.671877 S = -745.162617 -63.860709
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 41 patterns 6:13
did 20 / 41 patterns 6:14
did 30 / 41 patterns 6:14
did 40 / 41 patterns 6:14
did 41 / 41 patterns 6:14end of tree file.
Time used: 6:14
Model 7: beta
TREE # 1
(12, 4, 28, (((((((13, (18, 22, 21, 23), (27, 10), 2), 26, (3, 15), 14, 25), (30, 9)), (5, 7)), 29), 19), (16, 1, 20, 24)), (17, 8), (11, 6)); MP score: 121
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
35
0.089416 0.075095 0.053994 0.053119 0.071501 0.048645 0.010435 0.022901 0.062724 0.091044 0.040123 0.059443 0.108763 0.095508 0.039206 0.042413 0.073829 0.090971 0.068377 0.066869 0.068702 0.027381 0.105872 0.081043 0.051736 0.090588 0.041383 0.087316 0.057482 0.057754 0.053081 0.054808 0.082649 0.079236 0.084927 0.067027 0.034068 0.047864 0.016469 0.103016 0.018362 0.091562 0.092298 0.025431 0.027999 3.311090 1.102481 1.433699
ntime & nrate & np: 45 1 48
Bounds (np=48):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 4.412870
np = 48
lnL0 = -908.931692
Iterating by ming2
Initial: fx= 908.931692
x= 0.08942 0.07509 0.05399 0.05312 0.07150 0.04865 0.01043 0.02290 0.06272 0.09104 0.04012 0.05944 0.10876 0.09551 0.03921 0.04241 0.07383 0.09097 0.06838 0.06687 0.06870 0.02738 0.10587 0.08104 0.05174 0.09059 0.04138 0.08732 0.05748 0.05775 0.05308 0.05481 0.08265 0.07924 0.08493 0.06703 0.03407 0.04786 0.01647 0.10302 0.01836 0.09156 0.09230 0.02543 0.02800 3.31109 1.10248 1.43370
1 h-m-p 0.0000 0.0005 532.1187 +++ 842.814684 m 0.0005 54 | 1/48
2 h-m-p 0.0000 0.0000 151.1126 ++ 841.893007 m 0.0000 105 | 2/48
3 h-m-p 0.0000 0.0000 439.5063 ++ 840.492611 m 0.0000 156 | 3/48
4 h-m-p 0.0000 0.0000 1636.5788 ++ 839.004444 m 0.0000 207 | 4/48
5 h-m-p 0.0000 0.0002 215.1691 ++ 835.951615 m 0.0002 258 | 5/48
6 h-m-p 0.0000 0.0001 106.1875 ++ 834.803486 m 0.0001 309 | 6/48
7 h-m-p 0.0000 0.0001 193.9083 ++ 833.946077 m 0.0001 360 | 7/48
8 h-m-p 0.0000 0.0000 2203.4469 ++ 832.407920 m 0.0000 411 | 8/48
9 h-m-p 0.0000 0.0000 17863.4627 ++ 826.310229 m 0.0000 462 | 9/48
10 h-m-p 0.0000 0.0000 277094.2994 ++ 825.101322 m 0.0000 513 | 10/48
11 h-m-p 0.0000 0.0000 437.7650 ++ 824.346611 m 0.0000 564 | 11/48
12 h-m-p 0.0000 0.0001 193.0606 ++ 823.509228 m 0.0001 615 | 12/48
13 h-m-p 0.0002 0.0036 86.4146 ++YYYCCC 820.023457 5 0.0026 675 | 12/48
14 h-m-p 0.0002 0.0008 179.1819 ++ 817.937435 m 0.0008 726 | 12/48
15 h-m-p 0.0000 0.0000 258.6352
h-m-p: 6.28371327e-21 3.14185664e-20 2.58635250e+02 817.937435
.. | 12/48
16 h-m-p 0.0000 0.0074 159.7171 ++++YCCCCC 793.577114 5 0.0031 838 | 12/48
17 h-m-p 0.0007 0.0035 70.3161 ++ 783.959221 m 0.0035 889 | 13/48
18 h-m-p 0.0004 0.0020 68.8918 +CYCCC 781.605881 4 0.0015 948 | 13/48
19 h-m-p 0.0001 0.0007 109.8292 ++ 779.681135 m 0.0007 999 | 14/48
20 h-m-p 0.0004 0.0019 104.5648 +YCCC 778.145631 3 0.0011 1056 | 14/48
21 h-m-p 0.0007 0.0037 35.7574 +CCCC 777.242010 3 0.0025 1114 | 14/48
22 h-m-p 0.0020 0.0101 23.8866 CCCC 776.679505 3 0.0032 1171 | 14/48
23 h-m-p 0.0007 0.0036 11.2451 ++ 776.525191 m 0.0036 1222 | 15/48
24 h-m-p 0.0044 0.0258 9.0533 YCC 776.453273 2 0.0030 1276 | 15/48
25 h-m-p 0.0039 0.0195 6.7008 CYC 776.404309 2 0.0035 1330 | 15/48
26 h-m-p 0.0031 0.0675 7.7257 YC 776.307087 1 0.0067 1382 | 15/48
27 h-m-p 0.0077 0.0407 6.7641 YCC 776.246600 2 0.0050 1436 | 15/48
28 h-m-p 0.0036 0.0320 9.5624 CCC 776.160589 2 0.0049 1491 | 15/48
29 h-m-p 0.0046 0.0660 10.2049 YC 775.969193 1 0.0098 1543 | 15/48
30 h-m-p 0.0044 0.0246 22.7741 CCCC 775.670832 3 0.0065 1600 | 15/48
31 h-m-p 0.0039 0.0303 37.8792 YCCC 775.037930 3 0.0083 1656 | 15/48
32 h-m-p 0.0040 0.0200 62.2991 CCCC 774.477773 3 0.0046 1713 | 15/48
33 h-m-p 0.0032 0.0160 45.3990 CCC 774.129030 2 0.0040 1768 | 15/48
34 h-m-p 0.0068 0.0341 22.1679 YC 773.958704 1 0.0043 1820 | 15/48
35 h-m-p 0.0061 0.0305 11.1712 YCC 773.874824 2 0.0043 1874 | 15/48
36 h-m-p 0.0104 0.1285 4.6137 YC 773.826608 1 0.0070 1926 | 15/48
37 h-m-p 0.0083 0.0825 3.9180 YC 773.793815 1 0.0065 1978 | 15/48
38 h-m-p 0.0048 0.1217 5.2914 +CCC 773.656008 2 0.0198 2034 | 15/48
39 h-m-p 0.0041 0.0530 25.5506 +YCCC 773.245519 3 0.0120 2091 | 15/48
40 h-m-p 0.0048 0.0240 38.7513 CYC 773.012586 2 0.0046 2145 | 15/48
41 h-m-p 0.0062 0.0312 17.0833 CYC 772.892391 2 0.0056 2199 | 15/48
42 h-m-p 0.0102 0.0574 9.3230 YYC 772.801757 2 0.0081 2252 | 15/48
43 h-m-p 0.0180 0.0898 3.8592 CC 772.780165 1 0.0056 2305 | 15/48
44 h-m-p 0.0055 0.0595 3.9778 YCC 772.766513 2 0.0038 2359 | 15/48
45 h-m-p 0.0163 0.2490 0.9313 YC 772.758765 1 0.0099 2411 | 15/48
46 h-m-p 0.0109 0.5157 0.8494 +C 772.706692 0 0.0444 2496 | 15/48
47 h-m-p 0.0049 0.2456 7.6601 +CCC 772.397709 2 0.0269 2585 | 15/48
48 h-m-p 0.0117 0.0692 17.5809 CYC 772.134846 2 0.0100 2639 | 15/48
49 h-m-p 0.0073 0.0365 6.0808 YCC 772.109043 2 0.0035 2693 | 15/48
50 h-m-p 0.0695 1.2617 0.3092 YC 772.101276 1 0.0436 2745 | 15/48
51 h-m-p 0.0090 0.8811 1.5033 +YC 772.005758 1 0.0859 2831 | 15/48
52 h-m-p 0.0118 0.1110 10.9681 YCCC 771.948425 3 0.0072 2887 | 15/48
53 h-m-p 0.5567 7.8245 0.1423 CCC 771.909978 2 0.8499 2942 | 15/48
54 h-m-p 0.8799 8.0000 0.1374 CCC 771.890502 2 0.7245 3030 | 15/48
55 h-m-p 1.6000 8.0000 0.0272 CC 771.887134 1 1.2859 3116 | 15/48
56 h-m-p 1.6000 8.0000 0.0105 YC 771.886609 1 1.1873 3201 | 15/48
57 h-m-p 1.1849 8.0000 0.0105 C 771.886473 0 1.1201 3285 | 15/48
58 h-m-p 1.5072 8.0000 0.0078 C 771.886434 0 1.3649 3369 | 15/48
59 h-m-p 1.6000 8.0000 0.0036 C 771.886420 0 1.5877 3453 | 15/48
60 h-m-p 1.6000 8.0000 0.0016 C 771.886416 0 1.4225 3537 | 15/48
61 h-m-p 1.6000 8.0000 0.0001 Y 771.886416 0 1.0576 3621 | 15/48
62 h-m-p 1.6000 8.0000 0.0000 Y 771.886416 0 1.1346 3705 | 15/48
63 h-m-p 1.6000 8.0000 0.0000 Y 771.886416 0 1.6000 3789 | 15/48
64 h-m-p 1.6000 8.0000 0.0000 Y 771.886416 0 0.4000 3873 | 15/48
65 h-m-p 0.4508 8.0000 0.0000 ----C 771.886416 0 0.0004 3961
Out..
lnL = -771.886416
3962 lfun, 43582 eigenQcodon, 1782900 P(t)
end of tree file.
Time used: 14:29
Model 8: beta&w>1
TREE # 1
(12, 4, 28, (((((((13, (18, 22, 21, 23), (27, 10), 2), 26, (3, 15), 14, 25), (30, 9)), (5, 7)), 29), 19), (16, 1, 20, 24)), (17, 8), (11, 6)); MP score: 121
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
35
0.023997 0.053417 0.072947 0.087365 0.037761 0.025915 0.046054 0.090277 0.054603 0.070993 0.038690 0.106422 0.061421 0.026825 0.026088 0.089053 0.093446 0.057561 0.026935 0.098766 0.106106 0.066136 0.065626 0.031891 0.067894 0.086281 0.045351 0.046040 0.047665 0.108421 0.042963 0.025026 0.044808 0.069147 0.011561 0.100312 0.085721 0.108947 0.051721 0.021197 0.085039 0.077890 0.087323 0.040917 0.045038 3.148676 0.900000 0.539450 1.469017 1.300000
ntime & nrate & np: 45 2 50
Bounds (np=50):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 4.967435
np = 50
lnL0 = -908.124895
Iterating by ming2
Initial: fx= 908.124895
x= 0.02400 0.05342 0.07295 0.08737 0.03776 0.02592 0.04605 0.09028 0.05460 0.07099 0.03869 0.10642 0.06142 0.02683 0.02609 0.08905 0.09345 0.05756 0.02694 0.09877 0.10611 0.06614 0.06563 0.03189 0.06789 0.08628 0.04535 0.04604 0.04767 0.10842 0.04296 0.02503 0.04481 0.06915 0.01156 0.10031 0.08572 0.10895 0.05172 0.02120 0.08504 0.07789 0.08732 0.04092 0.04504 3.14868 0.90000 0.53945 1.46902 1.30000
1 h-m-p 0.0000 0.0007 567.0610 ++++ 821.974400 m 0.0007 57 | 1/50
2 h-m-p 0.0000 0.0000 149.9042 ++ 821.565906 m 0.0000 110 | 2/50
3 h-m-p 0.0000 0.0000 1646.8744 ++ 814.593605 m 0.0000 163 | 3/50
4 h-m-p 0.0000 0.0000 2626.1860 ++ 809.395071 m 0.0000 216 | 4/50
5 h-m-p 0.0001 0.0003 97.6961 ++ 806.666113 m 0.0003 269 | 5/50
6 h-m-p 0.0000 0.0001 129.3262 ++ 806.084384 m 0.0001 322 | 6/50
7 h-m-p 0.0000 0.0001 477.5290 ++ 802.498555 m 0.0001 375 | 7/50
8 h-m-p 0.0000 0.0000 1103.0899 ++ 801.137089 m 0.0000 428 | 8/50
9 h-m-p 0.0000 0.0000 2472.5512 ++ 800.750127 m 0.0000 481 | 9/50
10 h-m-p 0.0000 0.0000 604.9383 ++ 800.708998 m 0.0000 534 | 10/50
11 h-m-p 0.0000 0.0001 243.6026 ++ 799.404678 m 0.0001 587 | 11/50
12 h-m-p 0.0000 0.0000 520.0222 ++ 799.339953 m 0.0000 640 | 12/50
13 h-m-p 0.0000 0.0007 45.0358 +++ 798.252779 m 0.0007 694 | 13/50
14 h-m-p 0.0011 0.0063 23.8000 +CCCC 796.633232 3 0.0048 754 | 13/50
15 h-m-p 0.0008 0.0040 43.2572 +YCCC 795.438560 3 0.0024 813 | 13/50
16 h-m-p 0.0020 0.0102 15.7708 CCCC 795.084389 3 0.0028 872 | 13/50
17 h-m-p 0.0036 0.0180 11.7775 YCC 794.867880 2 0.0029 928 | 13/50
18 h-m-p 0.0030 0.0149 10.9385 CYC 794.707459 2 0.0029 984 | 13/50
19 h-m-p 0.0032 0.0158 9.8306 CCCC 794.506354 3 0.0044 1043 | 13/50
20 h-m-p 0.0019 0.0093 13.1323 CCC 794.344980 2 0.0028 1100 | 13/50
21 h-m-p 0.0017 0.0084 13.6806 ++ 793.766055 m 0.0084 1153 | 14/50
22 h-m-p 0.0031 0.0154 32.0804 YCCC 792.735941 3 0.0062 1211 | 14/50
23 h-m-p 0.0017 0.0084 41.9705 CCCC 792.196283 3 0.0025 1270 | 14/50
24 h-m-p 0.0011 0.0056 21.2739 YCCC 791.929798 3 0.0027 1328 | 14/50
25 h-m-p 0.0036 0.0181 9.3631 YCC 791.860835 2 0.0023 1384 | 14/50
26 h-m-p 0.0026 0.0177 8.2570 CCC 791.773015 2 0.0035 1441 | 14/50
27 h-m-p 0.0033 0.0191 8.7904 YCCC 791.634528 3 0.0055 1499 | 14/50
28 h-m-p 0.0024 0.0277 20.4900 YC 791.323202 1 0.0054 1553 | 14/50
29 h-m-p 0.0026 0.0168 43.0246 YCCC 790.619637 3 0.0059 1611 | 14/50
30 h-m-p 0.0014 0.0069 84.1218 YCCC 790.004988 3 0.0027 1669 | 14/50
31 h-m-p 0.0040 0.0201 51.5106 YCCC 789.651645 3 0.0028 1727 | 14/50
32 h-m-p 0.0095 0.0474 5.8861 YCCC 789.590518 3 0.0049 1785 | 14/50
33 h-m-p 0.0068 0.0806 4.2447 CC 789.519082 1 0.0077 1840 | 14/50
34 h-m-p 0.0038 0.0950 8.5006 ++CCC 788.299657 2 0.0559 1899 | 14/50
35 h-m-p 0.0006 0.0031 81.7444 ++ 787.280600 m 0.0031 1952 | 14/50
36 h-m-p 0.0040 0.0199 23.5810 YYC 787.071107 2 0.0035 2007 | 14/50
37 h-m-p 0.0013 0.0066 8.3215 ++ 786.917760 m 0.0066 2060 | 14/50
38 h-m-p 0.0000 0.0000 9.1543
h-m-p: 1.83685122e-20 9.18425608e-20 9.15431402e+00 786.917760
.. | 14/50
39 h-m-p 0.0000 0.0027 71.1685 +++YCCC 784.929657 3 0.0012 2171 | 14/50
40 h-m-p 0.0010 0.0049 65.0506 +YYCCCC 781.009096 5 0.0029 2233 | 14/50
41 h-m-p 0.0004 0.0022 81.3817 ++ 778.166607 m 0.0022 2286 | 15/50
42 h-m-p 0.0005 0.0026 57.2335 +YYYCCC 776.635222 5 0.0019 2347 | 15/50
43 h-m-p 0.0003 0.0014 55.9214 ++ 775.628772 m 0.0014 2400 | 16/50
44 h-m-p 0.0009 0.0044 37.0454 YCYCCC 774.877913 5 0.0023 2461 | 16/50
45 h-m-p 0.0028 0.0142 26.9534 YYC 774.548463 2 0.0022 2516 | 16/50
46 h-m-p 0.0031 0.0156 15.9619 YCC 774.387993 2 0.0025 2572 | 16/50
47 h-m-p 0.0023 0.0115 13.9656 YYC 774.302720 2 0.0019 2627 | 16/50
48 h-m-p 0.0023 0.0114 8.4418 CYC 774.261289 2 0.0021 2683 | 16/50
49 h-m-p 0.0037 0.0354 4.7649 YCC 774.243437 2 0.0022 2739 | 16/50
50 h-m-p 0.0023 0.1272 4.5823 +CCC 774.181530 2 0.0084 2797 | 16/50
51 h-m-p 0.0045 0.0223 8.1722 YYC 774.130115 2 0.0038 2852 | 16/50
52 h-m-p 0.0021 0.0360 14.6443 CCC 774.085862 2 0.0019 2909 | 16/50
53 h-m-p 0.0038 0.0543 7.4272 CC 774.022559 1 0.0049 2964 | 16/50
54 h-m-p 0.0066 0.0977 5.5465 CYC 773.945139 2 0.0074 3020 | 16/50
55 h-m-p 0.0049 0.0421 8.3829 YCCC 773.779554 3 0.0092 3078 | 16/50
56 h-m-p 0.0040 0.0420 19.1621 YCCC 773.523939 3 0.0065 3136 | 16/50
57 h-m-p 0.0055 0.0277 10.8558 YCC 773.450115 2 0.0036 3192 | 16/50
58 h-m-p 0.0075 0.0445 5.2422 YCCC 773.415552 3 0.0043 3250 | 16/50
59 h-m-p 0.0054 0.1858 4.1886 YC 773.366203 1 0.0089 3304 | 16/50
60 h-m-p 0.0095 0.0736 3.9021 YCC 773.337247 2 0.0054 3360 | 16/50
61 h-m-p 0.0044 0.0936 4.7973 YC 773.279342 1 0.0080 3414 | 16/50
62 h-m-p 0.0110 0.1352 3.4759 CCC 773.181232 2 0.0154 3471 | 16/50
63 h-m-p 0.0045 0.1995 11.9352 +YCCC 772.905500 3 0.0122 3530 | 16/50
64 h-m-p 0.0054 0.0271 26.2284 CCCC 772.556759 3 0.0062 3589 | 16/50
65 h-m-p 0.0130 0.0650 8.9112 CCC 772.499763 2 0.0038 3646 | 16/50
66 h-m-p 0.0083 0.0665 4.1046 YC 772.481405 1 0.0038 3700 | 16/50
67 h-m-p 0.0172 0.2127 0.9115 YC 772.477211 1 0.0072 3754 | 16/50
68 h-m-p 0.0031 0.3931 2.0966 +CC 772.454103 1 0.0172 3844 | 16/50
69 h-m-p 0.0047 0.4846 7.7512 +YCCC 772.241912 3 0.0417 3903 | 16/50
70 h-m-p 0.0316 0.1579 9.6377 CCC 772.198170 2 0.0073 3960 | 16/50
71 h-m-p 0.0974 0.8632 0.7178 -YC 772.194284 1 0.0100 4015 | 16/50
72 h-m-p 0.0098 2.2580 0.7363 ++CC 772.110416 1 0.1792 4106 | 16/50
73 h-m-p 0.0099 0.2455 13.2618 YCCC 771.955334 3 0.0188 4198 | 16/50
74 h-m-p 0.1365 0.6823 0.6029 -CC 771.953604 1 0.0095 4254 | 16/50
75 h-m-p 0.0424 8.0000 0.1356 ++YCC 771.895281 2 1.1244 4346 | 16/50
76 h-m-p 1.6000 8.0000 0.0364 CC 771.888372 1 1.3498 4435 | 16/50
77 h-m-p 1.6000 8.0000 0.0199 C 771.887242 0 1.5632 4522 | 16/50
78 h-m-p 1.6000 8.0000 0.0187 CC 771.886898 1 2.0292 4611 | 16/50
79 h-m-p 1.6000 8.0000 0.0100 C 771.886816 0 1.5171 4698 | 16/50
80 h-m-p 1.6000 8.0000 0.0007 C 771.886810 0 1.3046 4785 | 16/50
81 h-m-p 1.6000 8.0000 0.0002 Y 771.886810 0 1.1451 4872 | 16/50
82 h-m-p 1.6000 8.0000 0.0001 C 771.886810 0 1.3616 4959 | 16/50
83 h-m-p 1.1846 8.0000 0.0001 ++ 771.886810 m 8.0000 5046 | 16/50
84 h-m-p 1.6000 8.0000 0.0003 ++ 771.886810 m 8.0000 5133 | 16/50
85 h-m-p 0.3225 8.0000 0.0069 ++C 771.886809 0 5.3053 5222 | 16/50
86 h-m-p 1.3036 8.0000 0.0281 ++ 771.886794 m 8.0000 5309 | 16/50
87 h-m-p 0.4491 8.0000 0.5012 -----------Y 771.886794 0 0.0000 5407 | 16/50
88 h-m-p 0.0160 8.0000 0.0212 +++C 771.886790 0 1.3147 5497 | 16/50
89 h-m-p 1.6000 8.0000 0.0018 Y 771.886790 0 1.0599 5584 | 16/50
90 h-m-p 1.6000 8.0000 0.0003 -----Y 771.886790 0 0.0004 5676 | 16/50
91 h-m-p 0.0160 8.0000 0.0154 +Y 771.886790 0 0.1236 5764 | 16/50
92 h-m-p 1.6000 8.0000 0.0009 ++ 771.886789 m 8.0000 5851 | 16/50
93 h-m-p 0.1165 8.0000 0.0649 ++C 771.886780 0 2.2379 5940 | 16/50
94 h-m-p 1.6000 8.0000 0.0546 ++ 771.886731 m 8.0000 6027 | 16/50
95 h-m-p 0.0712 0.3562 1.7875 +Y 771.886700 0 0.2013 6115 | 16/50
96 h-m-p 0.2060 1.0300 0.2689 Y 771.886694 0 0.4197 6168 | 16/50
97 h-m-p 0.7946 3.9729 0.0413 ++ 771.886614 m 3.9729 6255 | 16/50
98 h-m-p 0.0000 0.0015 3167.3223 -C 771.886610 0 0.0000 6343 | 16/50
99 h-m-p 0.1878 8.0000 0.0143 +YC 771.886379 1 1.8091 6398 | 16/50
100 h-m-p 1.6000 8.0000 0.0019 +Y 771.886363 0 4.0987 6486 | 16/50
101 h-m-p 1.6000 8.0000 0.0004 ++ 771.886207 m 8.0000 6573 | 16/50
102 h-m-p 0.0389 8.0000 0.0882 +++YC 771.881595 1 1.9614 6664 | 16/50
103 h-m-p 1.6000 8.0000 0.0855 ++ 771.852958 m 8.0000 6751 | 16/50
104 h-m-p 1.4004 8.0000 0.4885 YC 771.844717 1 0.7036 6839 | 16/50
105 h-m-p 1.6000 8.0000 0.1023 YC 771.842881 1 0.6891 6927 | 16/50
106 h-m-p 1.6000 8.0000 0.0358 C 771.842681 0 1.6000 7014 | 16/50
107 h-m-p 1.6000 8.0000 0.0072 C 771.842646 0 1.6273 7101 | 16/50
108 h-m-p 1.6000 8.0000 0.0034 C 771.842643 0 1.4006 7188 | 16/50
109 h-m-p 1.6000 8.0000 0.0002 Y 771.842643 0 1.2559 7275 | 16/50
110 h-m-p 1.6000 8.0000 0.0000 Y 771.842643 0 1.0676 7362 | 16/50
111 h-m-p 1.6000 8.0000 0.0000 C 771.842643 0 1.6000 7449 | 16/50
112 h-m-p 1.6000 8.0000 0.0000 Y 771.842643 0 1.1957 7536 | 16/50
113 h-m-p 1.6000 8.0000 0.0000 ----------------.. | 16/50
114 h-m-p 0.0160 8.0000 0.0000 ------------- | 16/50
115 h-m-p 0.0160 8.0000 0.0000 -------------
Out..
lnL = -771.842643
7834 lfun, 94008 eigenQcodon, 3877830 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -779.462366 S = -745.787780 -47.366192
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 41 patterns 32:30
did 20 / 41 patterns 32:30
did 30 / 41 patterns 32:31
did 40 / 41 patterns 32:31
did 41 / 41 patterns 32:31end of tree file.
Time used: 32:31
The loglikelihoods for models M1, M2, M7 and M8 are -775.119182 -775.119182 -771.886416 -771.842643 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
TGEV_AHHF_NA_AQT01350_1_2015_12_22_China_Swine_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGKLLVCIGFGDTLLAAKDKA
HLJ_HRB_2016_11_NA_AUG98131_1_2016_11_China_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGRLLVCIGFGDTFEEAEQKA
XXN_NA_QDM36988_1_2018_04_China_Cat_Alphacoronavirus_1 -------MDTVKFIGISVDAVLDELDSIAFAVTLKVLFNSVKLLVCIGFGDTFEEAEQKA
TGEV_USA_Minnesota141_2007_NSP3a_ASV64323_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGRLLVCIGFGDTLLAARDKA
CCoV_NTU336_F_2008_ORF3a_ADB28908_1_2008_11_Taiwan_Dog_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGKLLVCIGFGDTLLEAKDKA
TGEV_USA_Minnesota150_2013_NSP3a_ASV64403_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGRLLVCIGFGDTLLAARDKA
CB_05_ORF3a_AKA65830_1_2005_Italy_Dog_Alphacoronavirus_1 -------MDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGKLLVCIGFGDTPLEAKDKA
TGEV_USA_Minnesota152_2014_NSP3a_ASV64421_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTRRLLVCIGFGDTLLAARDKA
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_1 MSQYRSCMDIVKSIDTSVDAVLDELDRTYFAVTLKVEFKTGKLLVCIGFGDTLFEAKEKA
UNKNOWN_HQ012372_NA_ADL71498_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELNSIAFAVTLKVLFTSGKLLVCIGFGDTFEEAEQKA
TGEV_USA_SouthDakota154_2014_NSP3a_ASV64439_1_2014_02_05_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGRLLVCIGFGDTLLAARDKA
TGEV_USA_Tennessee144_2008_NSP3a_ASV64350_1_2008_04_15_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGRLLVCIGFGDTLLAARDKA
67F_ORF_3a_AJO27004_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGRLLVCIGFGDTFEEAEQKA
UU24_NA_ADL71477_1_2008_01_03_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAALDELESIAFAVTLKVLFNSGKLLVCIGFGDTFEEAEQKA
RM_NA_ACT10855_1_2002_01_28_USA_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLCNSGKLLVCIGFGDTFEEAEQKA
TGEV_USA_Z_1986_NSP3a_ASV64278_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVQFKTGKLLVCIGFGDTLLAAKDKA
TGEV_USA_Wisconsin151_2014_NSP3a_ASV64412_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTRRLLVCIGFGDTLLAARDKA
Cat1_day28_deletion_NA_AMD11187_1_2013_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGKLLVCIGFGDTFEEAEQKA
WSU_79_1683_NA_AFH58020_1_NA_NA_Unknown_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGKLLVCIGFGDTLLEAKDKA
SHXB_NA_AKA60055_1_2013_03_07_China_Swine_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGKLLVCIGFGDTLLAAKDKA
Cat2_day21_withoutdeletion_NA_AMD11165_1_2013_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGKLLVCIGFGDTFEEAEQKA
Cat2_day21_deletion_NA_AMD11154_1_2013_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGKLLVCIGFGDTFEEAEQKA
Cat3_day28_withoutdeletion_NA_AMD11231_1_2013_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGKLLVCIGFGDTFEEAEQKA
attenuated_Purdue_P115_NA_ABG89322_1_NA_NA_Swine_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGKLLVCIGFGDTLLAAKDKA
Felis_catus_NLD_UU88_2010_NS3a_AGT52081_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGVSVDAVLDELNSIAFAVTLKVLFNSGKLLVCIGFGDTFEEAEQKA
Cat_1_Karlslunde_NA_ASU62500_1_2015_02_01_Denmark_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDTIAFAVTLKVLFNSGNLLVCIGFGDTFEEAEQKA
UU18_NA_ADL71456_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1 -------METVKSIGISVDAVLDELNSTAFAVTLKVLFTSGKLLVCIGFGDTFEEAEQKA
OH7269_ORF3a_AKV62756_1_2014_07_24_USA_Swine_Alphacoronavirus_1 -------MDIVKSINTYVDAVLDEFDCTYFAVTLKVEFKTG------TFVYRFW------
HLJ_072_NA_ASB15749_1_2016_07_01_China_Dog_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGKLLVCIGFGDTLLEAKDKA
DF_2_R3i_ORF3a_AFH55112_1_NA_NA_Cat_Alphacoronavirus_1 -------MDIVKSIDTSVDAVLDEFDRTYFAVTLKVEFKTGKLLVCIGFGDTLFEAKEKA
*: ** * ***.***:: ******* .: *
TGEV_AHHF_NA_AQT01350_1_2015_12_22_China_Swine_Alphacoronavirus_1 YAKLGLSIIEEVNSHIVV-
HLJ_HRB_2016_11_NA_AUG98131_1_2016_11_China_Cat_Alphacoronavirus_1 YAKLQLD-IEESPNHTTV-
XXN_NA_QDM36988_1_2018_04_China_Cat_Alphacoronavirus_1 YAKLQLA-IEESPNYTTV-
TGEV_USA_Minnesota141_2007_NSP3a_ASV64323_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 YAKLGLATIEEVNTQNPKH
CCoV_NTU336_F_2008_ORF3a_ADB28908_1_2008_11_Taiwan_Dog_Alphacoronavirus_1 YAKLGLSIIEEVNSHTVV-
TGEV_USA_Minnesota150_2013_NSP3a_ASV64403_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 YAKLGLATIEEVNTQNPKH
CB_05_ORF3a_AKA65830_1_2005_Italy_Dog_Alphacoronavirus_1 YAKLGFSIIEEVNSHTVV-
TGEV_USA_Minnesota152_2014_NSP3a_ASV64421_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 YAKLGLATIEEVNTQNPKH
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_1 YAKLGLSIVEEVNSHTVV-
UNKNOWN_HQ012372_NA_ADL71498_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 YAKLQLD-IEEPPNHTTI-
TGEV_USA_SouthDakota154_2014_NSP3a_ASV64439_1_2014_02_05_USA_Unknown_Alphacoronavirus_1 YAKLGLATIEEVNTQNPKH
TGEV_USA_Tennessee144_2008_NSP3a_ASV64350_1_2008_04_15_USA_Unknown_Alphacoronavirus_1 YAKLGLATIEEVNTQNPKH
67F_ORF_3a_AJO27004_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 YAKLQLD-IEESFTHKTV-
UU24_NA_ADL71477_1_2008_01_03_Netherlands_Cat_Alphacoronavirus_1 YAKLQLD-IEESPNHTTV-
RM_NA_ACT10855_1_2002_01_28_USA_Cat_Alphacoronavirus_1 YAKLQLG-IEESPNYTTV-
TGEV_USA_Z_1986_NSP3a_ASV64278_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 YAKLGLSIIEEVNSHIVV-
TGEV_USA_Wisconsin151_2014_NSP3a_ASV64412_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 YAKLGLATIEEVNTQNPKH
Cat1_day28_deletion_NA_AMD11187_1_2013_Belgium_Cat_Alphacoronavirus_1 YAKLQLD-IEESSNHTTV-
WSU_79_1683_NA_AFH58020_1_NA_NA_Unknown_Alphacoronavirus_1 YAKLGLSIIEEVNSHTVV-
SHXB_NA_AKA60055_1_2013_03_07_China_Swine_Alphacoronavirus_1 YAKLGLSIIEEVNSHIVV-
Cat2_day21_withoutdeletion_NA_AMD11165_1_2013_Belgium_Cat_Alphacoronavirus_1 YAKLQLD-IEESSNHTTV-
Cat2_day21_deletion_NA_AMD11154_1_2013_Belgium_Cat_Alphacoronavirus_1 YAKLQLD-IEESSNHTTV-
Cat3_day28_withoutdeletion_NA_AMD11231_1_2013_Belgium_Cat_Alphacoronavirus_1 YAKLQLD-IEESSNHTTV-
attenuated_Purdue_P115_NA_ABG89322_1_NA_NA_Swine_Alphacoronavirus_1 YAKLGLSIIEEVNSHIVV-
Felis_catus_NLD_UU88_2010_NS3a_AGT52081_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 YAKLQLD-VEESPNHTTV-
Cat_1_Karlslunde_NA_ASU62500_1_2015_02_01_Denmark_Cat_Alphacoronavirus_1 YAKLQLD-IEESPNHTTV-
UU18_NA_ADL71456_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1 YAKLQLD-IEEPFNHTTV-
OH7269_ORF3a_AKV62756_1_2014_07_24_USA_Swine_Alphacoronavirus_1 -------------------
HLJ_072_NA_ASB15749_1_2016_07_01_China_Dog_Alphacoronavirus_1 YAKLGLSIIEEVNSHTVV-
DF_2_R3i_ORF3a_AFH55112_1_NA_NA_Cat_Alphacoronavirus_1 YAKLGLSIVEEVNSHTVV-
>TGEV_AHHF_NA_AQT01350_1_2015_12_22_China_Swine_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTTACACATCCGTAGATGCTGTACTTGACGAACTTGATTGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCTGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATATAGTTGTT--- >HLJ_HRB_2016_11_NA_AUG98131_1_2016_11_China_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCCATCGGCATCTCTGTCGACGCTGTACTGGACGAGTTAGACTCCATTGCATTTGCTGTAACACTTAAAGTATTATTTACCTCTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGCCTAATCATACGACTGTT--- >XXN_NA_QDM36988_1_2018_04_China_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTTCATTGGCATCTCTGTAGACGCCGTACTTGACGAATTAGATTCCATTGCTTTTGCTGTAACACTTAAAGTTTTATTTAACTCTGTTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGCT---ATTGAGGAGTCGCCTAATTATACGACTGTT--- >TGEV_USA_Minnesota141_2007_NSP3a_ASV64323_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCTGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >CCoV_NTU336_F_2008_ORF3a_ADB28908_1_2008_11_Taiwan_Dog_Alphacoronavirus_1 ATGAGTCATTACAGGTCTTGTATGGACATTGTCAAATCTATTGACACATCCGTAGACGCTGTACTTGACGAACTTGATCGTGCATATTTTGCTGTAACTCTTAAAGTAGAGTTCAAAACTGGTAAA------------------CTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGAGGCTAAGGATAAAGCATATGCTAAACTTGGTCTCTCTATTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >TGEV_USA_Minnesota150_2013_NSP3a_ASV64403_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCTGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTTGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >CB_05_ORF3a_AKA65830_1_2005_Italy_Dog_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCTATTGACACATCCGTAGACGCTGTACTTGACGAACTTGATCGTGCATACTTTGCTGTAACTCTTAAAGTAGAGTTTAAGACTGGTAAA------------------CTACTTGTGTGTATAGGTTTTGGTGATACACCTCTTGAGGCTAAGGATAAAGCATATGCTAAACTTGGTTTCTCTATTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >TGEV_USA_Minnesota152_2014_NSP3a_ASV64421_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCAGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACTCGTAGG------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_1 ATGAGTCAATACAGGTCTTGTATGGACATTGTCAAATCTATTGATACATCCGTAGACGCTGTACTTGACGAATTAGACCGCACTTATTTTGCTGTAACTCTTAAAGTAGAATTCAAGACTGGTAAA------------------CTTCTTGTTTGCATAGGTTTTGGTGATACACTTTTTGAGGCTAAAGAAAAAGCTTATGCTAAACTTGGTCTCTCTATTGTTGAAGAAGTCAATAGTCATACAGTTGTT--- >UNKNOWN_HQ012372_NA_ADL71498_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGCATCTCTGTGGACGCTGTACTTGACGAGTTAAACTCCATTGCATTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGCCGCCTAATCATACGACTATT--- >TGEV_USA_SouthDakota154_2014_NSP3a_ASV64439_1_2014_02_05_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCTGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTTGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >TGEV_USA_Tennessee144_2008_NSP3a_ASV64350_1_2008_04_15_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTTAAATCCATTAATACATCCGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >67F_ORF_3a_AJO27004_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCCATTGGCATCTCTGTAGACGCTGTACTTGACGAGTTAGATTCTATTGCTTTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAGA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTTTACTCATAAGACTGTT--- >UU24_NA_ADL71477_1_2008_01_03_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGCATCTCTGTCGACGCCGCACTTGACGAATTAGAGTCCATTGCATTTGCTGTAACACTTAAAGTGTTATTTAATTCTGGAAAA------------------CTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGCCTAATCATACGACTGTT--- >RM_NA_ACT10855_1_2002_01_28_USA_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCTATTGGCATCTCTGTAGACGCTGTACTTGACGAGTTAGACTCCATAGCGTTTGCTGTAACACTTAAAGTCCTATGTAATTCCGGAAAG------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAAGCTGAACAAAAAGCTTATGCCAAACTTCAGCTGGGT---ATTGAGGAGTCGCCTAATTATACGACTGTT--- >TGEV_USA_Z_1986_NSP3a_ASV64278_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTTACACATCCGTAGATGCTGTACTTGACGAACTTGATTGTGCATACTTTGCTGTAACTCTTAAAGTACAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACACTTCTTGCTGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATATAGTTGTT--- >TGEV_USA_Wisconsin151_2014_NSP3a_ASV64412_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATCAGTGGACGCTGTACTTGACGAATTTGATTGTGCATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACTCGTAGG------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCGGCTAGGGATAAAGCATATGCTAAGCTTGGTCTCGCCACTATTGAAGAAGTAAACACACAAAATCCAAAGCAT >Cat1_day28_deletion_NA_AMD11187_1_2013_Belgium_Cat_Alphacoronavirus_1 ---------------------ATGGACACCGTCAAGTCTATTGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGATTCCATTGCATTTGCTGTAACACTTAAAGTTTTATTTACCTCTGGAAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAGCAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTCTAATCATACGACTGTT--- >WSU_79_1683_NA_AFH58020_1_NA_NA_Unknown_Alphacoronavirus_1 ATGAGTCACTACAGATCTTGTATGGATATTGTCAAATCTATTGACACATCCGTAGACGCTGTACTTGACGAACTTGATCGTGCATACTTTGCTGTTACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------CTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGAGGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >SHXB_NA_AKA60055_1_2013_03_07_China_Swine_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTTACACATCCGTAGATGCTGTACTTGACGAACTTGATTGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCTGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATATAGTTGTT--- >Cat2_day21_withoutdeletion_NA_AMD11165_1_2013_Belgium_Cat_Alphacoronavirus_1 ---------------------ATGGACACCGTCAAGTCTATTGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGATTCCATTGCATTTGCTGTAACACTTAAAGTTTTATTTACCTCTGGAAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAGCAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTCTAATCATACGACTGTT--- >Cat2_day21_deletion_NA_AMD11154_1_2013_Belgium_Cat_Alphacoronavirus_1 ---------------------ATGGACACCGTCAAGTCTATTGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGATTCCATTGCATTTGCTGTAACACTTAAAGTTTTATTTACCTCTGGAAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAGCAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTCTAATCATACGACTGTT--- >Cat3_day28_withoutdeletion_NA_AMD11231_1_2013_Belgium_Cat_Alphacoronavirus_1 ---------------------ATGGACACCGTCAAGTCTATTGGCATCTCTGTTGACGCTGTACTTGACGAGTTAGATTCCATTGCATTTGCTGTAACACTTAAAGTTTTATTTACCTCTGGAAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAGCAAAAAGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGTCTAATCATACGACTGTT--- >attenuated_Purdue_P115_NA_ABG89322_1_NA_NA_Swine_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTTACACATCCGTAGATGCTGTACTTGACGAACTTGATTGTGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAGACTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGACACACTTCTTGCTGCTAAGGATAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATATAGTTGTT--- >Felis_catus_NLD_UU88_2010_NS3a_AGT52081_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCCATTGGCGTTTCTGTAGACGCTGTACTTGACGAGTTAAATTCCATTGCATTTGCTGTAACACTTAAAGTGTTATTTAATTCTGGCAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTCGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAGTTGGAT---GTTGAAGAGTCGCCTAATCATACGACTGTT--- >Cat_1_Karlslunde_NA_ASU62500_1_2015_02_01_Denmark_Cat_Alphacoronavirus_1 ---------------------ATGGACACTGTCAAGTCCATCGGCATCTCTGTTGACGCTGTACTTGACGAATTAGATACCATTGCGTTTGCTGTAACACTTAAAGTGTTATTCAATTCTGGTAAT------------------TTACTTGTGTGTATAGGTTTTGGTGATACCTTTGAGGAGGCTGAACAAAAGGCTTATGCCAAACTTCAGCTGGAT---ATTGAAGAGTCGCCTAATCATACGACTGTT--- >UU18_NA_ADL71456_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1 ---------------------ATGGAAACTGTCAAGTCTATTGGCATCTCTGTGGACGCTGTGCTTGACGAATTAAATTCCACTGCATTTGCTGTAACACTTAAAGTATTATTTACTTCTGGTAAA------------------TTACTTGTGTGTATAGGTTTTGGTGATACTTTTGAGGAGGCTGAACAAAAAGCTTATGCCAAACTTCAATTGGAT---ATTGAAGAGCCGTTTAATCATACGACTGTT--- >OH7269_ORF3a_AKV62756_1_2014_07_24_USA_Swine_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCCATTAATACATACGTGGACGCTGTACTTGACGAATTTGATTGTACATACTTCGCTGTTACTCTTAAAGTAGAATTTAAGACTGGT------------------------------------ACGTTTGTGTATAGGTTTTGG--------------------------------------------------------------------------- >HLJ_072_NA_ASB15749_1_2016_07_01_China_Dog_Alphacoronavirus_1 ATGAGTCATTACAGGTCTTGTATGGACATTGTCAAATCTATTGACACATCCGTAGACGCTGTACTTGACGAACTTGATCGTGCATATTTTGCTGTGACTCTTAAAGTAGAATTCAAGACTGGTAAA------------------CTACTTGTGTGTATAGGTTTTGGTGACACACTTCTCGAGGCTAAGGACAAAGCATATGCTAAGCTTGGTCTCTCCATTATTGAAGAAGTCAATAGTCATACAGTTGTT--- >DF_2_R3i_ORF3a_AFH55112_1_NA_NA_Cat_Alphacoronavirus_1 ---------------------ATGGACATTGTCAAATCTATTGATACATCCGTAGACGCTGTACTTGACGAATTTGACCGTACTTATTTTGCTGTAACTCTTAAAGTAGAATTCAAGACTGGTAAA------------------CTTCTTGTTTGCATAGGTTTTGGTGATACACTTTTTGAGGCTAAAGAAAAAGCTTATGCTAAACTTGGTCTCTCTATTGTTGAAGAAGTCAATAGTCATACAGTTGTT---
>TGEV_AHHF_NA_AQT01350_1_2015_12_22_China_Swine_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGKLLVCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV- >HLJ_HRB_2016_11_NA_AUG98131_1_2016_11_China_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGRLLVCIGFGDTFEEAEQKAYAKLQLD-IEESPNHTTV- >XXN_NA_QDM36988_1_2018_04_China_Cat_Alphacoronavirus_1 -------MDTVKFIGISVDAVLDELDSIAFAVTLKVLFNSVKLLVCIGFGDTFEEAEQKAYAKLQLA-IEESPNYTTV- >TGEV_USA_Minnesota141_2007_NSP3a_ASV64323_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGRLLVCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >CCoV_NTU336_F_2008_ORF3a_ADB28908_1_2008_11_Taiwan_Dog_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGKLLVCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV- >TGEV_USA_Minnesota150_2013_NSP3a_ASV64403_1_2013_03_01_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGRLLVCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >CB_05_ORF3a_AKA65830_1_2005_Italy_Dog_Alphacoronavirus_1 -------MDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGKLLVCIGFGDTPLEAKDKAYAKLGFSIIEEVNSHTVV- >TGEV_USA_Minnesota152_2014_NSP3a_ASV64421_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTRRLLVCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_1 MSQYRSCMDIVKSIDTSVDAVLDELDRTYFAVTLKVEFKTGKLLVCIGFGDTLFEAKEKAYAKLGLSIVEEVNSHTVV- >UNKNOWN_HQ012372_NA_ADL71498_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELNSIAFAVTLKVLFTSGKLLVCIGFGDTFEEAEQKAYAKLQLD-IEEPPNHTTI- >TGEV_USA_SouthDakota154_2014_NSP3a_ASV64439_1_2014_02_05_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGRLLVCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >TGEV_USA_Tennessee144_2008_NSP3a_ASV64350_1_2008_04_15_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTGRLLVCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >67F_ORF_3a_AJO27004_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGRLLVCIGFGDTFEEAEQKAYAKLQLD-IEESFTHKTV- >UU24_NA_ADL71477_1_2008_01_03_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAALDELESIAFAVTLKVLFNSGKLLVCIGFGDTFEEAEQKAYAKLQLD-IEESPNHTTV- >RM_NA_ACT10855_1_2002_01_28_USA_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLCNSGKLLVCIGFGDTFEEAEQKAYAKLQLG-IEESPNYTTV- >TGEV_USA_Z_1986_NSP3a_ASV64278_1_2006_12_08_USA_Unknown_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVQFKTGKLLVCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV- >TGEV_USA_Wisconsin151_2014_NSP3a_ASV64412_1_2014_01_17_USA_Unknown_Alphacoronavirus_1 -------MDIVKSINTSVDAVLDEFDCAYFAVTLKVEFKTRRLLVCIGFGDTLLAARDKAYAKLGLATIEEVNTQNPKH >Cat1_day28_deletion_NA_AMD11187_1_2013_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGKLLVCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV- >WSU_79_1683_NA_AFH58020_1_NA_NA_Unknown_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGKLLVCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV- >SHXB_NA_AKA60055_1_2013_03_07_China_Swine_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGKLLVCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV- >Cat2_day21_withoutdeletion_NA_AMD11165_1_2013_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGKLLVCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV- >Cat2_day21_deletion_NA_AMD11154_1_2013_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGKLLVCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV- >Cat3_day28_withoutdeletion_NA_AMD11231_1_2013_Belgium_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDSIAFAVTLKVLFTSGKLLVCIGFGDTFEEAEQKAYAKLQLD-IEESSNHTTV- >attenuated_Purdue_P115_NA_ABG89322_1_NA_NA_Swine_Alphacoronavirus_1 -------MDIVKSIYTSVDAVLDELDCAYFAVTLKVEFKTGKLLVCIGFGDTLLAAKDKAYAKLGLSIIEEVNSHIVV- >Felis_catus_NLD_UU88_2010_NS3a_AGT52081_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 -------MDTVKSIGVSVDAVLDELNSIAFAVTLKVLFNSGKLLVCIGFGDTFEEAEQKAYAKLQLD-VEESPNHTTV- >Cat_1_Karlslunde_NA_ASU62500_1_2015_02_01_Denmark_Cat_Alphacoronavirus_1 -------MDTVKSIGISVDAVLDELDTIAFAVTLKVLFNSGNLLVCIGFGDTFEEAEQKAYAKLQLD-IEESPNHTTV- >UU18_NA_ADL71456_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1 -------METVKSIGISVDAVLDELNSTAFAVTLKVLFTSGKLLVCIGFGDTFEEAEQKAYAKLQLD-IEEPFNHTTV- >OH7269_ORF3a_AKV62756_1_2014_07_24_USA_Swine_Alphacoronavirus_1 -------MDIVKSINTYVDAVLDEFDCTYFAVTLKVEFKTG------TFVYRFW------------------------- >HLJ_072_NA_ASB15749_1_2016_07_01_China_Dog_Alphacoronavirus_1 MSHYRSCMDIVKSIDTSVDAVLDELDRAYFAVTLKVEFKTGKLLVCIGFGDTLLEAKDKAYAKLGLSIIEEVNSHTVV- >DF_2_R3i_ORF3a_AFH55112_1_NA_NA_Cat_Alphacoronavirus_1 -------MDIVKSIDTSVDAVLDEFDRTYFAVTLKVEFKTGKLLVCIGFGDTLFEAKEKAYAKLGLSIVEEVNSHTVV-
Reading sequence file /data//pss_subsets/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/codeml/fasta/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1
Found 30 sequences of length 255
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 20.0%
Found 93 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0%100.0%
Using a window size of 80 with k as 29
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 44 polymorphic sites
**p-Value(s)**
----------
NSS: 3.07e-01 (1000 permutations)
Max Chi^2: 2.00e-02 (1000 permutations)
PHI (Permutation): 6.23e-01 (1000 permutations)
PHI (Normal): 6.03e-01
#NEXUS
[ID: 8427396056]
begin taxa;
dimensions ntax=30;
taxlabels
TGEV_USA_Tennessee144_2008_NSP3a_ASV64350_1_2008_04_15_USA_Unknown_Alphacoronavirus_1
TGEV_USA_SouthDakota154_2014_NSP3a_ASV64439_1_2014_02_05_USA_Unknown_Alphacoronavirus_1
67F_ORF_3a_AJO27004_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
TGEV_USA_Wisconsin151_2014_NSP3a_ASV64412_1_2014_01_17_USA_Unknown_Alphacoronavirus_1
TGEV_USA_Z_1986_NSP3a_ASV64278_1_2006_12_08_USA_Unknown_Alphacoronavirus_1
Cat1_day28_deletion_NA_AMD11187_1_2013_Belgium_Cat_Alphacoronavirus_1
Cat2_day21_deletion_NA_AMD11154_1_2013_Belgium_Cat_Alphacoronavirus_1
Cat2_day21_withoutdeletion_NA_AMD11165_1_2013_Belgium_Cat_Alphacoronavirus_1
UU18_NA_ADL71456_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1
Cat_1_Karlslunde_NA_ASU62500_1_2015_02_01_Denmark_Cat_Alphacoronavirus_1
TGEV_USA_Minnesota141_2007_NSP3a_ASV64323_1_2007_02_08_USA_Unknown_Alphacoronavirus_1
DF_2_R3i_ORF3a_AFH55112_1_NA_NA_Cat_Alphacoronavirus_1
TGEV_USA_Minnesota152_2014_NSP3a_ASV64421_1_2014_01_31_USA_Unknown_Alphacoronavirus_1
TGEV_AHHF_NA_AQT01350_1_2015_12_22_China_Swine_Alphacoronavirus_1
XXN_NA_QDM36988_1_2018_04_China_Cat_Alphacoronavirus_1
HLJ_HRB_2016_11_NA_AUG98131_1_2016_11_China_Cat_Alphacoronavirus_1
TGEV_USA_Minnesota150_2013_NSP3a_ASV64403_1_2013_03_01_USA_Unknown_Alphacoronavirus_1
CCoV_NTU336_F_2008_ORF3a_ADB28908_1_2008_11_Taiwan_Dog_Alphacoronavirus_1
CB_05_ORF3a_AKA65830_1_2005_Italy_Dog_Alphacoronavirus_1
UNKNOWN_HQ012372_NA_ADL71498_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1
UU24_NA_ADL71477_1_2008_01_03_Netherlands_Cat_Alphacoronavirus_1
RM_NA_ACT10855_1_2002_01_28_USA_Cat_Alphacoronavirus_1
SHXB_NA_AKA60055_1_2013_03_07_China_Swine_Alphacoronavirus_1
WSU_79_1683_NA_AFH58020_1_NA_NA_Unknown_Alphacoronavirus_1
Felis_catus_NLD_UU88_2010_NS3a_AGT52081_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1
Cat3_day28_withoutdeletion_NA_AMD11231_1_2013_Belgium_Cat_Alphacoronavirus_1
attenuated_Purdue_P115_NA_ABG89322_1_NA_NA_Swine_Alphacoronavirus_1
23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_1
HLJ_072_NA_ASB15749_1_2016_07_01_China_Dog_Alphacoronavirus_1
OH7269_ORF3a_AKV62756_1_2014_07_24_USA_Swine_Alphacoronavirus_1
;
end;
begin trees;
translate
1 TGEV_USA_Tennessee144_2008_NSP3a_ASV64350_1_2008_04_15_USA_Unknown_Alphacoronavirus_1,
2 TGEV_USA_SouthDakota154_2014_NSP3a_ASV64439_1_2014_02_05_USA_Unknown_Alphacoronavirus_1,
3 67F_ORF_3a_AJO27004_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
4 TGEV_USA_Wisconsin151_2014_NSP3a_ASV64412_1_2014_01_17_USA_Unknown_Alphacoronavirus_1,
5 TGEV_USA_Z_1986_NSP3a_ASV64278_1_2006_12_08_USA_Unknown_Alphacoronavirus_1,
6 Cat1_day28_deletion_NA_AMD11187_1_2013_Belgium_Cat_Alphacoronavirus_1,
7 Cat2_day21_deletion_NA_AMD11154_1_2013_Belgium_Cat_Alphacoronavirus_1,
8 Cat2_day21_withoutdeletion_NA_AMD11165_1_2013_Belgium_Cat_Alphacoronavirus_1,
9 UU18_NA_ADL71456_1_2007_07_24_Netherlands_Cat_Alphacoronavirus_1,
10 Cat_1_Karlslunde_NA_ASU62500_1_2015_02_01_Denmark_Cat_Alphacoronavirus_1,
11 TGEV_USA_Minnesota141_2007_NSP3a_ASV64323_1_2007_02_08_USA_Unknown_Alphacoronavirus_1,
12 DF_2_R3i_ORF3a_AFH55112_1_NA_NA_Cat_Alphacoronavirus_1,
13 TGEV_USA_Minnesota152_2014_NSP3a_ASV64421_1_2014_01_31_USA_Unknown_Alphacoronavirus_1,
14 TGEV_AHHF_NA_AQT01350_1_2015_12_22_China_Swine_Alphacoronavirus_1,
15 XXN_NA_QDM36988_1_2018_04_China_Cat_Alphacoronavirus_1,
16 HLJ_HRB_2016_11_NA_AUG98131_1_2016_11_China_Cat_Alphacoronavirus_1,
17 TGEV_USA_Minnesota150_2013_NSP3a_ASV64403_1_2013_03_01_USA_Unknown_Alphacoronavirus_1,
18 CCoV_NTU336_F_2008_ORF3a_ADB28908_1_2008_11_Taiwan_Dog_Alphacoronavirus_1,
19 CB_05_ORF3a_AKA65830_1_2005_Italy_Dog_Alphacoronavirus_1,
20 UNKNOWN_HQ012372_NA_ADL71498_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1,
21 UU24_NA_ADL71477_1_2008_01_03_Netherlands_Cat_Alphacoronavirus_1,
22 RM_NA_ACT10855_1_2002_01_28_USA_Cat_Alphacoronavirus_1,
23 SHXB_NA_AKA60055_1_2013_03_07_China_Swine_Alphacoronavirus_1,
24 WSU_79_1683_NA_AFH58020_1_NA_NA_Unknown_Alphacoronavirus_1,
25 Felis_catus_NLD_UU88_2010_NS3a_AGT52081_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1,
26 Cat3_day28_withoutdeletion_NA_AMD11231_1_2013_Belgium_Cat_Alphacoronavirus_1,
27 attenuated_Purdue_P115_NA_ABG89322_1_NA_NA_Swine_Alphacoronavirus_1,
28 23_03_ORF3a_AKZ66472_1_2003_Italy_Unknown_Alphacoronavirus_1,
29 HLJ_072_NA_ASB15749_1_2016_07_01_China_Dog_Alphacoronavirus_1,
30 OH7269_ORF3a_AKV62756_1_2014_07_24_USA_Swine_Alphacoronavirus_1
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:1.008532e-02,11:3.140175e-03,30:1.199931e-01,(((((((3:3.504781e-02,(6:3.011946e-03,7:2.986717e-03,8:3.085653e-03,26:3.106435e-03)1.000:3.512560e-02,(9:4.187776e-02,20:1.079924e-02)0.970:1.930186e-02,16:2.392931e-02)0.767:1.226367e-02,10:3.855530e-02,(15:3.526716e-02,22:6.027315e-02)0.586:1.920425e-02,21:3.302717e-02,25:3.516754e-02)1.000:3.071555e-01,(12:3.828871e-03,28:9.264328e-03)0.826:3.279884e-02)0.994:4.876682e-02,(18:8.560509e-03,19:2.272990e-02)0.653:7.549551e-03)0.966:1.380866e-02,29:1.689410e-02)0.819:1.227662e-02,24:1.274596e-02)0.969:2.378943e-02,(5:1.174087e-02,14:3.095492e-03,23:3.006500e-03,27:2.838442e-03)0.967:2.022745e-02)1.000:1.190737e-01,(4:2.951293e-03,13:2.959887e-03)1.000:1.621296e-02,(2:3.306751e-03,17:6.817357e-03)0.541:6.512152e-03);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:1.008532e-02,11:3.140175e-03,30:1.199931e-01,(((((((3:3.504781e-02,(6:3.011946e-03,7:2.986717e-03,8:3.085653e-03,26:3.106435e-03):3.512560e-02,(9:4.187776e-02,20:1.079924e-02):1.930186e-02,16:2.392931e-02):1.226367e-02,10:3.855530e-02,(15:3.526716e-02,22:6.027315e-02):1.920425e-02,21:3.302717e-02,25:3.516754e-02):3.071555e-01,(12:3.828871e-03,28:9.264328e-03):3.279884e-02):4.876682e-02,(18:8.560509e-03,19:2.272990e-02):7.549551e-03):1.380866e-02,29:1.689410e-02):1.227662e-02,24:1.274596e-02):2.378943e-02,(5:1.174087e-02,14:3.095492e-03,23:3.006500e-03,27:2.838442e-03):2.022745e-02):1.190737e-01,(4:2.951293e-03,13:2.959887e-03):1.621296e-02,(2:3.306751e-03,17:6.817357e-03):6.512152e-03);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -1338.58 -1370.58
2 -1341.67 -1373.90
--------------------------------------
TOTAL -1339.23 -1373.24
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.430260 0.030464 1.100222 1.769659 1.413697 1253.24 1317.29 1.000
r(A<->C){all} 0.082298 0.000688 0.035784 0.134966 0.079780 686.69 758.54 1.001
r(A<->G){all} 0.212450 0.001436 0.141421 0.286823 0.211054 650.74 707.80 1.000
r(A<->T){all} 0.082534 0.000382 0.047007 0.122275 0.081177 863.56 943.95 1.000
r(C<->G){all} 0.091271 0.000918 0.037808 0.153379 0.088679 700.57 712.37 1.001
r(C<->T){all} 0.448371 0.002319 0.357866 0.542564 0.447596 690.24 720.56 1.003
r(G<->T){all} 0.083077 0.000472 0.042816 0.124467 0.081067 785.73 802.57 1.000
pi(A){all} 0.274098 0.000628 0.228468 0.327184 0.274082 1037.70 1070.54 1.002
pi(C){all} 0.172945 0.000408 0.134305 0.213147 0.171826 903.76 932.21 1.000
pi(G){all} 0.210634 0.000509 0.167689 0.255441 0.209955 856.09 926.37 1.000
pi(T){all} 0.342324 0.000670 0.292673 0.394032 0.341782 879.98 990.72 1.001
alpha{1,2} 0.840545 0.176789 0.364134 1.610549 0.736521 1072.92 1090.66 1.000
alpha{3} 1.947673 0.651975 0.789721 3.606293 1.767701 1423.45 1431.74 1.000
pinvar{all} 0.085627 0.004293 0.000025 0.214208 0.072480 1078.53 1111.34 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/A76_NS3a_AEQ61969_2_1976_USA_Dog_Alphacoronavirus_1.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 30 ls = 41
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 3 4 4 3 2 4 | Ser TCT 0 2 2 1 1 1 | Tyr TAT 0 0 0 0 1 0 | Cys TGT 1 0 0 1 0 1
TTC 0 0 1 1 1 0 | TCC 2 2 1 1 1 1 | TAC 2 0 0 1 0 1 | TGC 0 0 0 0 0 0
Leu TTA 0 2 2 0 0 0 | TCA 0 0 0 0 0 0 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 0 0 0 0 0 0 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 5 1 2 4 5 4 | Pro CCT 0 0 0 0 0 0 | His CAT 0 0 0 0 0 0 | Arg CGT 0 0 0 0 1 0
CTC 0 0 0 0 0 0 | CCC 0 0 0 0 0 0 | CAC 0 0 0 0 0 0 | CGC 0 0 0 0 0 0
CTA 0 0 0 0 0 0 | CCA 0 0 0 0 0 0 | Gln CAA 0 0 0 0 0 0 | CGA 0 0 0 0 0 0
CTG 0 1 0 0 0 0 | CCG 0 0 0 0 0 0 | CAG 0 0 0 0 0 0 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 2 1 2 2 2 2 | Thr ACT 2 2 2 2 2 2 | Asn AAT 0 0 0 1 0 1 | Ser AGT 0 0 0 0 0 0
ATC 0 2 1 0 0 0 | ACC 0 1 0 0 0 0 | AAC 0 0 1 0 0 0 | AGC 0 0 0 0 0 0
ATA 0 0 0 0 0 0 | ACA 2 1 1 2 2 2 | Lys AAA 2 1 1 2 3 2 | Arg AGA 0 0 0 0 0 0
Met ATG 1 1 1 1 1 1 | ACG 0 0 0 0 0 0 | AAG 1 1 1 1 0 1 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 0 0 2 1 0 1 | Ala GCT 2 2 2 2 2 2 | Asp GAT 2 1 2 1 1 2 | Gly GGT 3 3 2 3 3 3
GTC 1 2 1 1 1 1 | GCC 0 0 1 0 0 0 | GAC 3 4 3 4 5 3 | GGC 0 1 1 0 0 0
GTA 4 3 3 2 4 2 | GCA 1 1 0 1 1 1 | Glu GAA 2 0 1 2 1 2 | GGA 0 0 0 0 0 0
GTG 0 0 0 1 0 1 | GCG 0 0 0 0 0 0 | GAG 0 2 1 0 1 0 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 3 3 3 4 4 3 | Ser TCT 1 0 1 3 1 0 | Tyr TAT 0 0 1 0 0 0 | Cys TGT 0 1 0 0 1 1
TTC 0 1 1 0 0 1 | TCC 1 1 1 1 1 2 | TAC 1 1 0 0 1 1 | TGC 0 0 0 0 0 0
Leu TTA 0 0 1 2 0 0 | TCA 0 1 0 0 0 0 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 0 0 0 0 0 0 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 4 4 3 2 4 4 | Pro CCT 1 0 0 0 0 0 | His CAT 0 0 0 0 0 0 | Arg CGT 1 1 0 0 0 0
CTC 0 0 0 0 0 0 | CCC 0 0 0 0 0 0 | CAC 0 0 0 0 0 0 | CGC 0 0 1 0 0 0
CTA 0 0 0 0 0 0 | CCA 0 0 0 0 0 0 | Gln CAA 0 0 0 0 0 0 | CGA 0 0 0 0 0 0
CTG 0 0 0 0 0 0 | CCG 0 0 0 0 0 0 | CAG 0 0 0 0 0 0 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 2 2 2 2 2 2 | Thr ACT 2 2 3 3 2 2 | Asn AAT 0 1 0 0 1 1 | Ser AGT 0 0 0 0 0 0
ATC 0 0 0 1 0 0 | ACC 0 0 0 0 0 0 | AAC 0 0 0 1 0 0 | AGC 0 0 0 0 0 0
ATA 0 0 0 0 0 0 | ACA 2 2 2 1 2 2 | Lys AAA 2 2 2 1 2 2 | Arg AGA 0 0 0 0 0 0
Met ATG 1 1 1 1 1 1 | ACG 0 0 0 0 0 0 | AAG 1 1 1 1 1 1 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 0 1 0 0 1 2 | Ala GCT 2 2 2 2 2 2 | Asp GAT 2 1 2 1 1 2 | Gly GGT 3 2 3 3 3 3
GTC 1 1 1 1 1 0 | GCC 0 0 0 0 0 0 | GAC 4 4 4 3 4 3 | GGC 0 0 0 1 0 0
GTA 4 2 4 3 2 2 | GCA 1 1 0 1 1 1 | Glu GAA 1 2 2 0 2 2 | GGA 0 0 0 0 0 0
GTG 0 1 0 1 1 1 | GCG 0 0 0 0 0 0 | GAG 1 0 0 2 0 0 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 4 4 3 3 3 4 | Ser TCT 3 3 2 0 0 3 | Tyr TAT 0 0 0 0 0 0 | Cys TGT 0 0 1 1 1 0
TTC 0 0 0 0 1 0 | TCC 1 1 2 2 1 1 | TAC 0 0 0 2 1 0 | TGC 0 0 0 0 0 0
Leu TTA 2 2 1 0 0 2 | TCA 0 0 0 0 1 0 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 0 0 0 0 0 0 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 2 2 2 5 4 2 | Pro CCT 0 0 0 0 0 0 | His CAT 0 0 0 0 0 0 | Arg CGT 0 0 0 0 1 0
CTC 0 0 0 0 0 0 | CCC 0 0 0 0 0 0 | CAC 0 0 0 0 0 0 | CGC 0 0 0 0 0 0
CTA 0 0 1 0 0 0 | CCA 0 0 0 0 0 0 | Gln CAA 0 0 0 1 0 0 | CGA 0 0 0 0 0 0
CTG 0 0 0 0 0 0 | CCG 0 0 0 0 0 0 | CAG 0 0 0 0 0 0 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 2 2 1 2 2 2 | Thr ACT 3 2 2 2 2 1 | Asn AAT 0 1 1 0 1 0 | Ser AGT 0 0 0 0 0 0
ATC 1 1 1 0 0 1 | ACC 0 0 0 0 0 2 | AAC 0 0 0 0 0 0 | AGC 0 0 0 0 0 0
ATA 0 0 1 0 0 0 | ACA 1 1 1 2 2 1 | Lys AAA 1 1 1 2 2 1 | Arg AGA 0 0 0 0 0 0
Met ATG 1 1 1 1 1 1 | ACG 0 0 0 0 0 0 | AAG 1 1 1 1 1 1 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 0 0 0 0 1 2 | Ala GCT 3 1 2 2 2 2 | Asp GAT 2 1 1 3 1 2 | Gly GGT 3 2 2 3 2 2
GTC 1 2 2 1 1 1 | GCC 0 1 0 0 0 0 | GAC 3 3 4 2 4 3 | GGC 1 1 1 0 0 1
GTA 4 1 3 4 2 2 | GCA 0 2 0 1 1 1 | Glu GAA 0 1 0 1 2 0 | GGA 0 1 1 0 0 1
GTG 0 1 0 0 1 0 | GCG 0 0 1 0 0 0 | GAG 2 2 2 0 0 2 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 3 3 4 4 4 3 | Ser TCT 1 0 3 3 3 0 | Tyr TAT 0 0 0 0 0 0 | Cys TGT 0 1 0 0 0 1
TTC 0 0 0 0 0 0 | TCC 1 2 1 1 1 2 | TAC 1 2 0 0 0 2 | TGC 0 0 0 0 0 0
Leu TTA 0 0 2 2 2 0 | TCA 0 0 0 0 0 0 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 0 0 0 0 0 0 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 5 5 2 2 2 5 | Pro CCT 0 0 0 0 0 0 | His CAT 0 0 0 0 0 0 | Arg CGT 1 0 0 0 0 0
CTC 0 0 0 0 0 0 | CCC 0 0 0 0 0 0 | CAC 0 0 0 0 0 0 | CGC 0 0 0 0 0 0
CTA 0 0 0 0 0 0 | CCA 0 0 0 0 0 0 | Gln CAA 0 0 0 0 0 0 | CGA 0 0 0 0 0 0
CTG 0 0 0 0 0 0 | CCG 0 0 0 0 0 0 | CAG 0 0 0 0 0 0 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 2 2 2 2 2 2 | Thr ACT 2 2 1 1 1 2 | Asn AAT 0 0 0 0 0 0 | Ser AGT 0 0 0 0 0 0
ATC 0 0 1 1 1 0 | ACC 0 0 2 2 2 0 | AAC 0 0 0 0 0 0 | AGC 0 0 0 0 0 0
ATA 0 0 0 0 0 0 | ACA 2 2 1 1 1 2 | Lys AAA 2 2 1 1 1 2 | Arg AGA 0 0 0 0 0 0
Met ATG 1 1 1 1 1 1 | ACG 0 0 0 0 0 0 | AAG 1 1 1 1 1 1 | AGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 1 0 2 2 2 0 | Ala GCT 2 2 2 2 2 2 | Asp GAT 2 2 2 2 2 2 | Gly GGT 3 3 2 2 2 3
GTC 1 1 1 1 1 1 | GCC 0 0 0 0 0 0 | GAC 4 3 3 3 3 3 | GGC 0 0 1 1 1 0
GTA 3 4 2 2 2 4 | GCA 1 1 1 1 1 1 | Glu GAA 2 2 0 0 0 2 | GGA 0 0 1 1 1 0
GTG 0 0 0 0 0 0 | GCG 0 0 0 0 0 0 | GAG 0 0 2 2 2 0 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 3 3 4 4 2 4 | Ser TCT 2 2 3 0 1 1 | Tyr TAT 0 0 0 1 1 1 | Cys TGT 0 0 0 1 0 0
TTC 1 1 0 1 1 1 | TCC 2 1 1 1 1 1 | TAC 0 0 0 2 0 0 | TGC 0 0 0 0 0 0
Leu TTA 2 2 2 0 0 0 | TCA 0 0 0 0 0 0 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 0 0 0 0 0 0 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 0 0 0 1 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 2 2 2 2 4 3 | Pro CCT 0 0 0 0 0 0 | His CAT 0 0 0 0 0 0 | Arg CGT 0 0 0 0 1 1
CTC 0 0 0 0 1 0 | CCC 0 0 0 0 0 0 | CAC 0 0 0 0 0 0 | CGC 0 0 0 0 0 0
CTA 0 0 0 0 0 0 | CCA 0 0 0 0 0 0 | Gln CAA 0 0 0 0 0 0 | CGA 0 0 0 0 0 0
CTG 0 0 0 0 0 0 | CCG 0 0 0 0 0 0 | CAG 0 0 0 0 0 0 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 2 1 1 2 2 2 | Thr ACT 2 1 4 2 2 3 | Asn AAT 2 1 1 1 0 0 | Ser AGT 0 0 0 0 0 0
ATC 0 2 1 0 0 0 | ACC 0 2 0 0 0 0 | AAC 0 0 0 0 0 0 | AGC 0 0 0 0 0 0
ATA 0 0 0 0 0 0 | ACA 1 1 1 2 2 2 | Lys AAA 1 1 1 2 2 2 | Arg AGA 0 0 0 0 0 0
Met ATG 1 1 1 1 1 1 | ACG 0 0 0 1 0 0 | AAG 1 1 1 1 1 1 | AGG 0 0 0 1 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 1 1 0 1 0 0 | Ala GCT 2 2 2 2 2 2 | Asp GAT 1 2 1 1 1 2 | Gly GGT 2 3 3 1 3 3
GTC 1 1 1 1 1 1 | GCC 0 0 0 0 0 0 | GAC 3 3 2 3 5 4 | GGC 2 1 1 0 0 0
GTA 3 2 2 2 3 4 | GCA 1 0 1 0 1 0 | Glu GAA 0 1 2 2 2 2 | GGA 0 0 0 0 0 0
GTG 1 1 2 2 1 0 | GCG 0 1 0 0 0 0 | GAG 2 1 1 0 0 0 | GGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C49
position 1: T:0.19512 C:0.12195 A:0.24390 G:0.43902
position 2: T:0.39024 C:0.21951 A:0.29268 G:0.09756
position 3: T:0.48780 C:0.19512 A:0.26829 G:0.04878
Average T:0.35772 C:0.17886 A:0.26829 G:0.19512
#2: C38
position 1: T:0.24390 C:0.04878 A:0.24390 G:0.46341
position 2: T:0.41463 C:0.26829 A:0.21951 G:0.09756
position 3: T:0.39024 C:0.29268 A:0.19512 G:0.12195
Average T:0.34959 C:0.20325 A:0.21951 G:0.22764
#3: C98
position 1: T:0.24390 C:0.04878 A:0.24390 G:0.46341
position 2: T:0.46341 C:0.21951 A:0.24390 G:0.07317
position 3: T:0.48780 C:0.24390 A:0.19512 G:0.07317
Average T:0.39837 C:0.17073 A:0.22764 G:0.20325
#4: C58
position 1: T:0.19512 C:0.09756 A:0.26829 G:0.43902
position 2: T:0.39024 C:0.21951 A:0.29268 G:0.09756
position 3: T:0.51220 C:0.19512 A:0.21951 G:0.07317
Average T:0.36585 C:0.17073 A:0.26016 G:0.20325
#5: C15
position 1: T:0.14634 C:0.14634 A:0.24390 G:0.46341
position 2: T:0.39024 C:0.21951 A:0.29268 G:0.09756
position 3: T:0.48780 C:0.19512 A:0.26829 G:0.04878
Average T:0.34146 C:0.18699 A:0.26829 G:0.20325
#6: C61
position 1: T:0.19512 C:0.09756 A:0.26829 G:0.43902
position 2: T:0.39024 C:0.21951 A:0.29268 G:0.09756
position 3: T:0.56098 C:0.14634 A:0.21951 G:0.07317
Average T:0.38211 C:0.15447 A:0.26016 G:0.20325
#7: C14
position 1: T:0.14634 C:0.14634 A:0.24390 G:0.46341
position 2: T:0.36585 C:0.24390 A:0.29268 G:0.09756
position 3: T:0.51220 C:0.17073 A:0.24390 G:0.07317
Average T:0.34146 C:0.18699 A:0.26016 G:0.21138
#8: C60
position 1: T:0.19512 C:0.12195 A:0.26829 G:0.41463
position 2: T:0.39024 C:0.21951 A:0.29268 G:0.09756
position 3: T:0.48780 C:0.19512 A:0.24390 G:0.07317
Average T:0.35772 C:0.17886 A:0.26829 G:0.19512
#9: C5
position 1: T:0.19512 C:0.09756 A:0.26829 G:0.43902
position 2: T:0.39024 C:0.21951 A:0.29268 G:0.09756
position 3: T:0.48780 C:0.19512 A:0.26829 G:0.04878
Average T:0.35772 C:0.17073 A:0.27642 G:0.19512
#10: C73
position 1: T:0.24390 C:0.04878 A:0.26829 G:0.43902
position 2: T:0.41463 C:0.26829 A:0.21951 G:0.09756
position 3: T:0.48780 C:0.19512 A:0.19512 G:0.12195
Average T:0.38211 C:0.17073 A:0.22764 G:0.21951
#11: C66
position 1: T:0.19512 C:0.09756 A:0.26829 G:0.43902
position 2: T:0.39024 C:0.21951 A:0.29268 G:0.09756
position 3: T:0.53659 C:0.17073 A:0.21951 G:0.07317
Average T:0.37398 C:0.16260 A:0.26016 G:0.20325
#12: C67
position 1: T:0.19512 C:0.09756 A:0.26829 G:0.43902
position 2: T:0.39024 C:0.21951 A:0.29268 G:0.09756
position 3: T:0.53659 C:0.17073 A:0.21951 G:0.07317
Average T:0.37398 C:0.16260 A:0.26016 G:0.20325
#13: C11
position 1: T:0.24390 C:0.04878 A:0.24390 G:0.46341
position 2: T:0.41463 C:0.26829 A:0.21951 G:0.09756
position 3: T:0.53659 C:0.17073 A:0.19512 G:0.09756
Average T:0.39837 C:0.16260 A:0.21951 G:0.21951
#14: C88
position 1: T:0.24390 C:0.04878 A:0.24390 G:0.46341
position 2: T:0.39024 C:0.26829 A:0.24390 G:0.09756
position 3: T:0.43902 C:0.21951 A:0.21951 G:0.12195
Average T:0.35772 C:0.17886 A:0.23577 G:0.22764
#15: C46
position 1: T:0.21951 C:0.07317 A:0.24390 G:0.46341
position 2: T:0.39024 C:0.24390 A:0.24390 G:0.12195
position 3: T:0.41463 C:0.24390 A:0.21951 G:0.12195
Average T:0.34146 C:0.18699 A:0.23577 G:0.23577
#16: C68
position 1: T:0.19512 C:0.14634 A:0.24390 G:0.41463
position 2: T:0.39024 C:0.21951 A:0.29268 G:0.09756
position 3: T:0.51220 C:0.17073 A:0.26829 G:0.04878
Average T:0.36585 C:0.17886 A:0.26829 G:0.18699
#17: C69
position 1: T:0.19512 C:0.12195 A:0.26829 G:0.41463
position 2: T:0.39024 C:0.21951 A:0.29268 G:0.09756
position 3: T:0.48780 C:0.19512 A:0.24390 G:0.07317
Average T:0.35772 C:0.17886 A:0.26829 G:0.19512
#18: C16
position 1: T:0.24390 C:0.04878 A:0.24390 G:0.46341
position 2: T:0.41463 C:0.26829 A:0.21951 G:0.09756
position 3: T:0.48780 C:0.21951 A:0.19512 G:0.09756
Average T:0.38211 C:0.17886 A:0.21951 G:0.21951
#19: C97
position 1: T:0.14634 C:0.14634 A:0.24390 G:0.46341
position 2: T:0.39024 C:0.21951 A:0.29268 G:0.09756
position 3: T:0.53659 C:0.17073 A:0.24390 G:0.04878
Average T:0.35772 C:0.17886 A:0.26016 G:0.20325
#20: C48
position 1: T:0.19512 C:0.12195 A:0.24390 G:0.43902
position 2: T:0.39024 C:0.21951 A:0.29268 G:0.09756
position 3: T:0.48780 C:0.19512 A:0.26829 G:0.04878
Average T:0.35772 C:0.17886 A:0.26829 G:0.19512
#21: C20
position 1: T:0.24390 C:0.04878 A:0.24390 G:0.46341
position 2: T:0.41463 C:0.26829 A:0.21951 G:0.09756
position 3: T:0.48780 C:0.21951 A:0.19512 G:0.09756
Average T:0.38211 C:0.17886 A:0.21951 G:0.21951
#22: C19
position 1: T:0.24390 C:0.04878 A:0.24390 G:0.46341
position 2: T:0.41463 C:0.26829 A:0.21951 G:0.09756
position 3: T:0.48780 C:0.21951 A:0.19512 G:0.09756
Average T:0.38211 C:0.17886 A:0.21951 G:0.21951
#23: C23
position 1: T:0.24390 C:0.04878 A:0.24390 G:0.46341
position 2: T:0.41463 C:0.26829 A:0.21951 G:0.09756
position 3: T:0.48780 C:0.21951 A:0.19512 G:0.09756
Average T:0.38211 C:0.17886 A:0.21951 G:0.21951
#24: C100
position 1: T:0.19512 C:0.12195 A:0.24390 G:0.43902
position 2: T:0.39024 C:0.21951 A:0.29268 G:0.09756
position 3: T:0.48780 C:0.19512 A:0.26829 G:0.04878
Average T:0.35772 C:0.17886 A:0.26829 G:0.19512
#25: C32
position 1: T:0.24390 C:0.04878 A:0.24390 G:0.46341
position 2: T:0.41463 C:0.24390 A:0.24390 G:0.09756
position 3: T:0.46341 C:0.21951 A:0.19512 G:0.12195
Average T:0.37398 C:0.17073 A:0.22764 G:0.22764
#26: C25
position 1: T:0.21951 C:0.04878 A:0.26829 G:0.46341
position 2: T:0.41463 C:0.24390 A:0.24390 G:0.09756
position 3: T:0.43902 C:0.26829 A:0.17073 G:0.12195
Average T:0.35772 C:0.18699 A:0.22764 G:0.22764
#27: C78
position 1: T:0.24390 C:0.04878 A:0.26829 G:0.43902
position 2: T:0.39024 C:0.29268 A:0.21951 G:0.09756
position 3: T:0.51220 C:0.14634 A:0.21951 G:0.12195
Average T:0.38211 C:0.16260 A:0.23577 G:0.21951
#28: C41
position 1: T:0.26829 C:0.04878 A:0.31707 G:0.36585
position 2: T:0.39024 C:0.19512 A:0.31707 G:0.09756
position 3: T:0.43902 C:0.19512 A:0.19512 G:0.17073
Average T:0.36585 C:0.14634 A:0.27642 G:0.21138
#29: C35
position 1: T:0.14634 C:0.14634 A:0.24390 G:0.46341
position 2: T:0.39024 C:0.21951 A:0.29268 G:0.09756
position 3: T:0.46341 C:0.21951 A:0.24390 G:0.07317
Average T:0.33333 C:0.19512 A:0.26016 G:0.21138
#30: C27
position 1: T:0.19512 C:0.09756 A:0.26829 G:0.43902
position 2: T:0.39024 C:0.21951 A:0.29268 G:0.09756
position 3: T:0.53659 C:0.17073 A:0.24390 G:0.04878
Average T:0.37398 C:0.16260 A:0.26829 G:0.19512
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 102 | Ser S TCT 43 | Tyr Y TAT 5 | Cys C TGT 12
TTC 12 | TCC 38 | TAC 18 | TGC 0
Leu L TTA 26 | TCA 2 | *** * TAA 0 | *** * TGA 0
TTG 0 | TCG 0 | TAG 0 | Trp W TGG 1
------------------------------------------------------------------------------
Leu L CTT 95 | Pro P CCT 1 | His H CAT 0 | Arg R CGT 7
CTC 1 | CCC 0 | CAC 0 | CGC 1
CTA 1 | CCA 0 | Gln Q CAA 1 | CGA 0
CTG 1 | CCG 0 | CAG 0 | CGG 0
------------------------------------------------------------------------------
Ile I ATT 56 | Thr T ACT 61 | Asn N AAT 13 | Ser S AGT 0
ATC 14 | ACC 11 | AAC 2 | AGC 0
ATA 1 | ACA 47 | Lys K AAA 48 | Arg R AGA 0
Met M ATG 30 | ACG 1 | AAG 29 | AGG 1
------------------------------------------------------------------------------
Val V GTT 21 | Ala A GCT 60 | Asp D GAT 48 | Gly G GGT 78
GTC 32 | GCC 2 | GAC 102 | GGC 14
GTA 84 | GCA 24 | Glu E GAA 36 | GGA 6
GTG 15 | GCG 2 | GAG 25 | GGG 0
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.21057 C:0.08780 A:0.25528 G:0.44634
position 2: T:0.39919 C:0.23740 A:0.26585 G:0.09756
position 3: T:0.48943 C:0.20081 A:0.22439 G:0.08537
Average T:0.36640 C:0.17534 A:0.24851 G:0.20976
Model 1: NearlyNeutral (2 categories)
TREE # 1: (12, 4, 28, (((((((13, (18, 22, 21, 23), (27, 10), 2), 26, (3, 15), 14, 25), (30, 9)), (5, 7)), 29), 19), (16, 1, 20, 24)), (17, 8), (11, 6)); MP score: 121
lnL(ntime: 45 np: 48): -775.119182 +0.000000
31..12 31..4 31..28 31..32 32..33 33..34 34..35 35..36 36..37 37..38 38..13 38..39 39..18 39..22 39..21 39..23 38..40 40..27 40..10 38..2 37..26 37..41 41..3 41..15 37..14 37..25 36..42 42..30 42..9 35..43 43..5 43..7 34..29 33..19 32..44 44..16 44..1 44..20 44..24 31..45 45..17 45..8 31..46 46..11 46..6
0.082839 0.000004 0.603602 0.203141 0.069978 0.056631 0.000004 0.209769 1.894459 0.061923 0.059416 0.183444 0.000004 0.000004 0.000004 0.000004 0.091877 0.128995 0.020700 0.143430 0.206166 0.000004 0.209220 0.287935 0.215767 0.148292 0.000004 0.000004 0.056369 0.027502 0.030096 0.111665 0.057290 0.054378 0.053910 0.057286 0.000004 0.000004 0.000004 0.054169 0.000004 0.000004 0.026586 0.000004 0.026965 3.311090 0.918472 0.094927
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 5.433860
(12: 0.082839, 4: 0.000004, 28: 0.603602, (((((((13: 0.059416, (18: 0.000004, 22: 0.000004, 21: 0.000004, 23: 0.000004): 0.183444, (27: 0.128995, 10: 0.020700): 0.091877, 2: 0.143430): 0.061923, 26: 0.206166, (3: 0.209220, 15: 0.287935): 0.000004, 14: 0.215767, 25: 0.148292): 1.894459, (30: 0.000004, 9: 0.056369): 0.000004): 0.209769, (5: 0.030096, 7: 0.111665): 0.027502): 0.000004, 29: 0.057290): 0.056631, 19: 0.054378): 0.069978, (16: 0.057286, 1: 0.000004, 20: 0.000004, 24: 0.000004): 0.053910): 0.203141, (17: 0.000004, 8: 0.000004): 0.054169, (11: 0.000004, 6: 0.026965): 0.026586);
(C67: 0.082839, C58: 0.000004, C41: 0.603602, (((((((C11: 0.059416, (C16: 0.000004, C19: 0.000004, C20: 0.000004, C23: 0.000004): 0.183444, (C78: 0.128995, C73: 0.020700): 0.091877, C38: 0.143430): 0.061923, C25: 0.206166, (C98: 0.209220, C46: 0.287935): 0.000004, C88: 0.215767, C32: 0.148292): 1.894459, (C27: 0.000004, C5: 0.056369): 0.000004): 0.209769, (C15: 0.030096, C14: 0.111665): 0.027502): 0.000004, C35: 0.057290): 0.056631, C97: 0.054378): 0.069978, (C68: 0.057286, C49: 0.000004, C48: 0.000004, C100: 0.000004): 0.053910): 0.203141, (C69: 0.000004, C60: 0.000004): 0.054169, (C66: 0.000004, C61: 0.026965): 0.026586);
Detailed output identifying parameters
kappa (ts/tv) = 3.31109
MLEs of dN/dS (w) for site classes (K=2)
p: 0.91847 0.08153
w: 0.09493 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.083 90.6 32.4 0.1687 0.0120 0.0712 1.1 2.3
31..4 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
31..28 0.604 90.6 32.4 0.1687 0.0875 0.5187 7.9 16.8
31..32 0.203 90.6 32.4 0.1687 0.0295 0.1746 2.7 5.7
32..33 0.070 90.6 32.4 0.1687 0.0101 0.0601 0.9 2.0
33..34 0.057 90.6 32.4 0.1687 0.0082 0.0487 0.7 1.6
34..35 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
35..36 0.210 90.6 32.4 0.1687 0.0304 0.1803 2.8 5.8
36..37 1.894 90.6 32.4 0.1687 0.2747 1.6280 24.9 52.8
37..38 0.062 90.6 32.4 0.1687 0.0090 0.0532 0.8 1.7
38..13 0.059 90.6 32.4 0.1687 0.0086 0.0511 0.8 1.7
38..39 0.183 90.6 32.4 0.1687 0.0266 0.1576 2.4 5.1
39..18 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
39..22 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
39..21 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
39..23 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
38..40 0.092 90.6 32.4 0.1687 0.0133 0.0790 1.2 2.6
40..27 0.129 90.6 32.4 0.1687 0.0187 0.1109 1.7 3.6
40..10 0.021 90.6 32.4 0.1687 0.0030 0.0178 0.3 0.6
38..2 0.143 90.6 32.4 0.1687 0.0208 0.1233 1.9 4.0
37..26 0.206 90.6 32.4 0.1687 0.0299 0.1772 2.7 5.7
37..41 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
41..3 0.209 90.6 32.4 0.1687 0.0303 0.1798 2.7 5.8
41..15 0.288 90.6 32.4 0.1687 0.0417 0.2474 3.8 8.0
37..14 0.216 90.6 32.4 0.1687 0.0313 0.1854 2.8 6.0
37..25 0.148 90.6 32.4 0.1687 0.0215 0.1274 1.9 4.1
36..42 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
42..30 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
42..9 0.056 90.6 32.4 0.1687 0.0082 0.0484 0.7 1.6
35..43 0.028 90.6 32.4 0.1687 0.0040 0.0236 0.4 0.8
43..5 0.030 90.6 32.4 0.1687 0.0044 0.0259 0.4 0.8
43..7 0.112 90.6 32.4 0.1687 0.0162 0.0960 1.5 3.1
34..29 0.057 90.6 32.4 0.1687 0.0083 0.0492 0.8 1.6
33..19 0.054 90.6 32.4 0.1687 0.0079 0.0467 0.7 1.5
32..44 0.054 90.6 32.4 0.1687 0.0078 0.0463 0.7 1.5
44..16 0.057 90.6 32.4 0.1687 0.0083 0.0492 0.8 1.6
44..1 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
44..20 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
44..24 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
31..45 0.054 90.6 32.4 0.1687 0.0079 0.0465 0.7 1.5
45..17 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
45..8 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
31..46 0.027 90.6 32.4 0.1687 0.0039 0.0228 0.3 0.7
46..11 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
46..6 0.027 90.6 32.4 0.1687 0.0039 0.0232 0.4 0.8
Time used: 2:11
Model 2: PositiveSelection (3 categories)
TREE # 1: (12, 4, 28, (((((((13, (18, 22, 21, 23), (27, 10), 2), 26, (3, 15), 14, 25), (30, 9)), (5, 7)), 29), 19), (16, 1, 20, 24)), (17, 8), (11, 6)); MP score: 121
lnL(ntime: 45 np: 50): -775.119182 +0.000000
31..12 31..4 31..28 31..32 32..33 33..34 34..35 35..36 36..37 37..38 38..13 38..39 39..18 39..22 39..21 39..23 38..40 40..27 40..10 38..2 37..26 37..41 41..3 41..15 37..14 37..25 36..42 42..30 42..9 35..43 43..5 43..7 34..29 33..19 32..44 44..16 44..1 44..20 44..24 31..45 45..17 45..8 31..46 46..11 46..6
0.082839 0.000004 0.603602 0.203141 0.069978 0.056631 0.000004 0.209769 1.894459 0.061923 0.059416 0.183444 0.000004 0.000004 0.000004 0.000004 0.091877 0.128995 0.020700 0.143430 0.206166 0.000004 0.209220 0.287935 0.215767 0.148292 0.000004 0.000004 0.056369 0.027502 0.030096 0.111665 0.057290 0.054378 0.053910 0.057286 0.000004 0.000004 0.000004 0.054169 0.000004 0.000004 0.026586 0.000004 0.026965 3.311090 0.918472 0.022905 0.094927 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 5.433860
(12: 0.082839, 4: 0.000004, 28: 0.603602, (((((((13: 0.059416, (18: 0.000004, 22: 0.000004, 21: 0.000004, 23: 0.000004): 0.183444, (27: 0.128995, 10: 0.020700): 0.091877, 2: 0.143430): 0.061923, 26: 0.206166, (3: 0.209220, 15: 0.287935): 0.000004, 14: 0.215767, 25: 0.148292): 1.894459, (30: 0.000004, 9: 0.056369): 0.000004): 0.209769, (5: 0.030096, 7: 0.111665): 0.027502): 0.000004, 29: 0.057290): 0.056631, 19: 0.054378): 0.069978, (16: 0.057286, 1: 0.000004, 20: 0.000004, 24: 0.000004): 0.053910): 0.203141, (17: 0.000004, 8: 0.000004): 0.054169, (11: 0.000004, 6: 0.026965): 0.026586);
(C67: 0.082839, C58: 0.000004, C41: 0.603602, (((((((C11: 0.059416, (C16: 0.000004, C19: 0.000004, C20: 0.000004, C23: 0.000004): 0.183444, (C78: 0.128995, C73: 0.020700): 0.091877, C38: 0.143430): 0.061923, C25: 0.206166, (C98: 0.209220, C46: 0.287935): 0.000004, C88: 0.215767, C32: 0.148292): 1.894459, (C27: 0.000004, C5: 0.056369): 0.000004): 0.209769, (C15: 0.030096, C14: 0.111665): 0.027502): 0.000004, C35: 0.057290): 0.056631, C97: 0.054378): 0.069978, (C68: 0.057286, C49: 0.000004, C48: 0.000004, C100: 0.000004): 0.053910): 0.203141, (C69: 0.000004, C60: 0.000004): 0.054169, (C66: 0.000004, C61: 0.026965): 0.026586);
Detailed output identifying parameters
kappa (ts/tv) = 3.31109
MLEs of dN/dS (w) for site classes (K=3)
p: 0.91847 0.02290 0.05862
w: 0.09493 1.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.083 90.6 32.4 0.1687 0.0120 0.0712 1.1 2.3
31..4 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
31..28 0.604 90.6 32.4 0.1687 0.0875 0.5187 7.9 16.8
31..32 0.203 90.6 32.4 0.1687 0.0295 0.1746 2.7 5.7
32..33 0.070 90.6 32.4 0.1687 0.0101 0.0601 0.9 2.0
33..34 0.057 90.6 32.4 0.1687 0.0082 0.0487 0.7 1.6
34..35 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
35..36 0.210 90.6 32.4 0.1687 0.0304 0.1803 2.8 5.8
36..37 1.894 90.6 32.4 0.1687 0.2747 1.6280 24.9 52.8
37..38 0.062 90.6 32.4 0.1687 0.0090 0.0532 0.8 1.7
38..13 0.059 90.6 32.4 0.1687 0.0086 0.0511 0.8 1.7
38..39 0.183 90.6 32.4 0.1687 0.0266 0.1576 2.4 5.1
39..18 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
39..22 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
39..21 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
39..23 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
38..40 0.092 90.6 32.4 0.1687 0.0133 0.0790 1.2 2.6
40..27 0.129 90.6 32.4 0.1687 0.0187 0.1109 1.7 3.6
40..10 0.021 90.6 32.4 0.1687 0.0030 0.0178 0.3 0.6
38..2 0.143 90.6 32.4 0.1687 0.0208 0.1233 1.9 4.0
37..26 0.206 90.6 32.4 0.1687 0.0299 0.1772 2.7 5.7
37..41 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
41..3 0.209 90.6 32.4 0.1687 0.0303 0.1798 2.7 5.8
41..15 0.288 90.6 32.4 0.1687 0.0417 0.2474 3.8 8.0
37..14 0.216 90.6 32.4 0.1687 0.0313 0.1854 2.8 6.0
37..25 0.148 90.6 32.4 0.1687 0.0215 0.1274 1.9 4.1
36..42 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
42..30 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
42..9 0.056 90.6 32.4 0.1687 0.0082 0.0484 0.7 1.6
35..43 0.028 90.6 32.4 0.1687 0.0040 0.0236 0.4 0.8
43..5 0.030 90.6 32.4 0.1687 0.0044 0.0259 0.4 0.8
43..7 0.112 90.6 32.4 0.1687 0.0162 0.0960 1.5 3.1
34..29 0.057 90.6 32.4 0.1687 0.0083 0.0492 0.8 1.6
33..19 0.054 90.6 32.4 0.1687 0.0079 0.0467 0.7 1.5
32..44 0.054 90.6 32.4 0.1687 0.0078 0.0463 0.7 1.5
44..16 0.057 90.6 32.4 0.1687 0.0083 0.0492 0.8 1.6
44..1 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
44..20 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
44..24 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
31..45 0.054 90.6 32.4 0.1687 0.0079 0.0465 0.7 1.5
45..17 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
45..8 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
31..46 0.027 90.6 32.4 0.1687 0.0039 0.0228 0.3 0.7
46..11 0.000 90.6 32.4 0.1687 0.0000 0.0000 0.0 0.0
46..6 0.027 90.6 32.4 0.1687 0.0039 0.0232 0.4 0.8
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C49)
Pr(w>1) post mean +- SE for w
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 0.412 0.588 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.199 0.097 0.089 0.088 0.088 0.088 0.088 0.088 0.088 0.088
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.008 0.080
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.004 0.055 0.324
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.010 0.121 0.388
sum of density on p0-p1 = 1.000000
Time used: 6:14
Model 7: beta (10 categories)
TREE # 1: (12, 4, 28, (((((((13, (18, 22, 21, 23), (27, 10), 2), 26, (3, 15), 14, 25), (30, 9)), (5, 7)), 29), 19), (16, 1, 20, 24)), (17, 8), (11, 6)); MP score: 121
lnL(ntime: 45 np: 48): -771.886416 +0.000000
31..12 31..4 31..28 31..32 32..33 33..34 34..35 35..36 36..37 37..38 38..13 38..39 39..18 39..22 39..21 39..23 38..40 40..27 40..10 38..2 37..26 37..41 41..3 41..15 37..14 37..25 36..42 42..30 42..9 35..43 43..5 43..7 34..29 33..19 32..44 44..16 44..1 44..20 44..24 31..45 45..17 45..8 31..46 46..11 46..6
0.084851 0.000004 0.631583 0.209529 0.073955 0.057286 0.000004 0.213483 2.147342 0.059959 0.057974 0.178488 0.000004 0.000004 0.000004 0.000004 0.088881 0.125113 0.019596 0.138317 0.199470 0.000004 0.203036 0.280964 0.209444 0.143297 0.000004 0.000004 0.056646 0.027849 0.030616 0.113287 0.057595 0.055413 0.053835 0.058940 0.000004 0.000004 0.000004 0.055449 0.000004 0.000004 0.027127 0.000004 0.027564 3.148676 0.569849 3.551856
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 5.686948
(12: 0.084851, 4: 0.000004, 28: 0.631583, (((((((13: 0.057974, (18: 0.000004, 22: 0.000004, 21: 0.000004, 23: 0.000004): 0.178488, (27: 0.125113, 10: 0.019596): 0.088881, 2: 0.138317): 0.059959, 26: 0.199470, (3: 0.203036, 15: 0.280964): 0.000004, 14: 0.209444, 25: 0.143297): 2.147342, (30: 0.000004, 9: 0.056646): 0.000004): 0.213483, (5: 0.030616, 7: 0.113287): 0.027849): 0.000004, 29: 0.057595): 0.057286, 19: 0.055413): 0.073955, (16: 0.058940, 1: 0.000004, 20: 0.000004, 24: 0.000004): 0.053835): 0.209529, (17: 0.000004, 8: 0.000004): 0.055449, (11: 0.000004, 6: 0.027564): 0.027127);
(C67: 0.084851, C58: 0.000004, C41: 0.631583, (((((((C11: 0.057974, (C16: 0.000004, C19: 0.000004, C20: 0.000004, C23: 0.000004): 0.178488, (C78: 0.125113, C73: 0.019596): 0.088881, C38: 0.138317): 0.059959, C25: 0.199470, (C98: 0.203036, C46: 0.280964): 0.000004, C88: 0.209444, C32: 0.143297): 2.147342, (C27: 0.000004, C5: 0.056646): 0.000004): 0.213483, (C15: 0.030616, C14: 0.113287): 0.027849): 0.000004, C35: 0.057595): 0.057286, C97: 0.055413): 0.073955, (C68: 0.058940, C49: 0.000004, C48: 0.000004, C100: 0.000004): 0.053835): 0.209529, (C69: 0.000004, C60: 0.000004): 0.055449, (C66: 0.000004, C61: 0.027564): 0.027127);
Detailed output identifying parameters
kappa (ts/tv) = 3.14868
Parameters in M7 (beta):
p = 0.56985 q = 3.55186
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00127 0.00886 0.02220 0.04133 0.06696 0.10055 0.14478 0.20499 0.29404 0.46336
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.085 90.7 32.3 0.1348 0.0105 0.0781 1.0 2.5
31..4 0.000 90.7 32.3 0.1348 0.0000 0.0000 0.0 0.0
31..28 0.632 90.7 32.3 0.1348 0.0784 0.5815 7.1 18.8
31..32 0.210 90.7 32.3 0.1348 0.0260 0.1929 2.4 6.2
32..33 0.074 90.7 32.3 0.1348 0.0092 0.0681 0.8 2.2
33..34 0.057 90.7 32.3 0.1348 0.0071 0.0527 0.6 1.7
34..35 0.000 90.7 32.3 0.1348 0.0000 0.0000 0.0 0.0
35..36 0.213 90.7 32.3 0.1348 0.0265 0.1966 2.4 6.3
36..37 2.147 90.7 32.3 0.1348 0.2666 1.9771 24.2 63.9
37..38 0.060 90.7 32.3 0.1348 0.0074 0.0552 0.7 1.8
38..13 0.058 90.7 32.3 0.1348 0.0072 0.0534 0.7 1.7
38..39 0.178 90.7 32.3 0.1348 0.0222 0.1643 2.0 5.3
39..18 0.000 90.7 32.3 0.1348 0.0000 0.0000 0.0 0.0
39..22 0.000 90.7 32.3 0.1348 0.0000 0.0000 0.0 0.0
39..21 0.000 90.7 32.3 0.1348 0.0000 0.0000 0.0 0.0
39..23 0.000 90.7 32.3 0.1348 0.0000 0.0000 0.0 0.0
38..40 0.089 90.7 32.3 0.1348 0.0110 0.0818 1.0 2.6
40..27 0.125 90.7 32.3 0.1348 0.0155 0.1152 1.4 3.7
40..10 0.020 90.7 32.3 0.1348 0.0024 0.0180 0.2 0.6
38..2 0.138 90.7 32.3 0.1348 0.0172 0.1274 1.6 4.1
37..26 0.199 90.7 32.3 0.1348 0.0248 0.1837 2.2 5.9
37..41 0.000 90.7 32.3 0.1348 0.0000 0.0000 0.0 0.0
41..3 0.203 90.7 32.3 0.1348 0.0252 0.1869 2.3 6.0
41..15 0.281 90.7 32.3 0.1348 0.0349 0.2587 3.2 8.4
37..14 0.209 90.7 32.3 0.1348 0.0260 0.1928 2.4 6.2
37..25 0.143 90.7 32.3 0.1348 0.0178 0.1319 1.6 4.3
36..42 0.000 90.7 32.3 0.1348 0.0000 0.0000 0.0 0.0
42..30 0.000 90.7 32.3 0.1348 0.0000 0.0000 0.0 0.0
42..9 0.057 90.7 32.3 0.1348 0.0070 0.0522 0.6 1.7
35..43 0.028 90.7 32.3 0.1348 0.0035 0.0256 0.3 0.8
43..5 0.031 90.7 32.3 0.1348 0.0038 0.0282 0.3 0.9
43..7 0.113 90.7 32.3 0.1348 0.0141 0.1043 1.3 3.4
34..29 0.058 90.7 32.3 0.1348 0.0072 0.0530 0.6 1.7
33..19 0.055 90.7 32.3 0.1348 0.0069 0.0510 0.6 1.6
32..44 0.054 90.7 32.3 0.1348 0.0067 0.0496 0.6 1.6
44..16 0.059 90.7 32.3 0.1348 0.0073 0.0543 0.7 1.8
44..1 0.000 90.7 32.3 0.1348 0.0000 0.0000 0.0 0.0
44..20 0.000 90.7 32.3 0.1348 0.0000 0.0000 0.0 0.0
44..24 0.000 90.7 32.3 0.1348 0.0000 0.0000 0.0 0.0
31..45 0.055 90.7 32.3 0.1348 0.0069 0.0511 0.6 1.6
45..17 0.000 90.7 32.3 0.1348 0.0000 0.0000 0.0 0.0
45..8 0.000 90.7 32.3 0.1348 0.0000 0.0000 0.0 0.0
31..46 0.027 90.7 32.3 0.1348 0.0034 0.0250 0.3 0.8
46..11 0.000 90.7 32.3 0.1348 0.0000 0.0000 0.0 0.0
46..6 0.028 90.7 32.3 0.1348 0.0034 0.0254 0.3 0.8
Time used: 14:29
Model 8: beta&w>1 (11 categories)
TREE # 1: (12, 4, 28, (((((((13, (18, 22, 21, 23), (27, 10), 2), 26, (3, 15), 14, 25), (30, 9)), (5, 7)), 29), 19), (16, 1, 20, 24)), (17, 8), (11, 6)); MP score: 121
check convergence..
lnL(ntime: 45 np: 50): -771.842643 +0.000000
31..12 31..4 31..28 31..32 32..33 33..34 34..35 35..36 36..37 37..38 38..13 38..39 39..18 39..22 39..21 39..23 38..40 40..27 40..10 38..2 37..26 37..41 41..3 41..15 37..14 37..25 36..42 42..30 42..9 35..43 43..5 43..7 34..29 33..19 32..44 44..16 44..1 44..20 44..24 31..45 45..17 45..8 31..46 46..11 46..6
0.084214 0.000004 0.628737 0.207587 0.072819 0.056999 0.000004 0.212247 2.088689 0.060379 0.058299 0.179651 0.000004 0.000004 0.000004 0.000004 0.089526 0.125988 0.019786 0.139338 0.200831 0.000004 0.204382 0.282554 0.210818 0.144369 0.000004 0.000004 0.056384 0.027692 0.030419 0.112599 0.057599 0.055056 0.053794 0.058413 0.000004 0.000004 0.000004 0.055048 0.000004 0.000004 0.026946 0.000004 0.027373 3.209712 0.976253 0.675302 4.759142 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 5.628596
(12: 0.084214, 4: 0.000004, 28: 0.628737, (((((((13: 0.058299, (18: 0.000004, 22: 0.000004, 21: 0.000004, 23: 0.000004): 0.179651, (27: 0.125988, 10: 0.019786): 0.089526, 2: 0.139338): 0.060379, 26: 0.200831, (3: 0.204382, 15: 0.282554): 0.000004, 14: 0.210818, 25: 0.144369): 2.088689, (30: 0.000004, 9: 0.056384): 0.000004): 0.212247, (5: 0.030419, 7: 0.112599): 0.027692): 0.000004, 29: 0.057599): 0.056999, 19: 0.055056): 0.072819, (16: 0.058413, 1: 0.000004, 20: 0.000004, 24: 0.000004): 0.053794): 0.207587, (17: 0.000004, 8: 0.000004): 0.055048, (11: 0.000004, 6: 0.027373): 0.026946);
(C67: 0.084214, C58: 0.000004, C41: 0.628737, (((((((C11: 0.058299, (C16: 0.000004, C19: 0.000004, C20: 0.000004, C23: 0.000004): 0.179651, (C78: 0.125988, C73: 0.019786): 0.089526, C38: 0.139338): 0.060379, C25: 0.200831, (C98: 0.204382, C46: 0.282554): 0.000004, C88: 0.210818, C32: 0.144369): 2.088689, (C27: 0.000004, C5: 0.056384): 0.000004): 0.212247, (C15: 0.030419, C14: 0.112599): 0.027692): 0.000004, C35: 0.057599): 0.056999, C97: 0.055056): 0.072819, (C68: 0.058413, C49: 0.000004, C48: 0.000004, C100: 0.000004): 0.053794): 0.207587, (C69: 0.000004, C60: 0.000004): 0.055048, (C66: 0.000004, C61: 0.027373): 0.026946);
Detailed output identifying parameters
kappa (ts/tv) = 3.20971
Parameters in M8 (beta&w>1):
p0 = 0.97625 p = 0.67530 q = 4.75914
(p1 = 0.02375) w = 1.00000
MLEs of dN/dS (w) for site classes (K=11)
p: 0.09763 0.09763 0.09763 0.09763 0.09763 0.09763 0.09763 0.09763 0.09763 0.09763 0.02375
w: 0.00223 0.01157 0.02544 0.04359 0.06655 0.09544 0.13248 0.18206 0.25507 0.39666 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.084 90.6 32.4 0.1420 0.0108 0.0764 1.0 2.5
31..4 0.000 90.6 32.4 0.1420 0.0000 0.0000 0.0 0.0
31..28 0.629 90.6 32.4 0.1420 0.0809 0.5701 7.3 18.4
31..32 0.208 90.6 32.4 0.1420 0.0267 0.1882 2.4 6.1
32..33 0.073 90.6 32.4 0.1420 0.0094 0.0660 0.8 2.1
33..34 0.057 90.6 32.4 0.1420 0.0073 0.0517 0.7 1.7
34..35 0.000 90.6 32.4 0.1420 0.0000 0.0000 0.0 0.0
35..36 0.212 90.6 32.4 0.1420 0.0273 0.1924 2.5 6.2
36..37 2.089 90.6 32.4 0.1420 0.2689 1.8937 24.4 61.3
37..38 0.060 90.6 32.4 0.1420 0.0078 0.0547 0.7 1.8
38..13 0.058 90.6 32.4 0.1420 0.0075 0.0529 0.7 1.7
38..39 0.180 90.6 32.4 0.1420 0.0231 0.1629 2.1 5.3
39..18 0.000 90.6 32.4 0.1420 0.0000 0.0000 0.0 0.0
39..22 0.000 90.6 32.4 0.1420 0.0000 0.0000 0.0 0.0
39..21 0.000 90.6 32.4 0.1420 0.0000 0.0000 0.0 0.0
39..23 0.000 90.6 32.4 0.1420 0.0000 0.0000 0.0 0.0
38..40 0.090 90.6 32.4 0.1420 0.0115 0.0812 1.0 2.6
40..27 0.126 90.6 32.4 0.1420 0.0162 0.1142 1.5 3.7
40..10 0.020 90.6 32.4 0.1420 0.0025 0.0179 0.2 0.6
38..2 0.139 90.6 32.4 0.1420 0.0179 0.1263 1.6 4.1
37..26 0.201 90.6 32.4 0.1420 0.0259 0.1821 2.3 5.9
37..41 0.000 90.6 32.4 0.1420 0.0000 0.0000 0.0 0.0
41..3 0.204 90.6 32.4 0.1420 0.0263 0.1853 2.4 6.0
41..15 0.283 90.6 32.4 0.1420 0.0364 0.2562 3.3 8.3
37..14 0.211 90.6 32.4 0.1420 0.0271 0.1911 2.5 6.2
37..25 0.144 90.6 32.4 0.1420 0.0186 0.1309 1.7 4.2
36..42 0.000 90.6 32.4 0.1420 0.0000 0.0000 0.0 0.0
42..30 0.000 90.6 32.4 0.1420 0.0000 0.0000 0.0 0.0
42..9 0.056 90.6 32.4 0.1420 0.0073 0.0511 0.7 1.7
35..43 0.028 90.6 32.4 0.1420 0.0036 0.0251 0.3 0.8
43..5 0.030 90.6 32.4 0.1420 0.0039 0.0276 0.4 0.9
43..7 0.113 90.6 32.4 0.1420 0.0145 0.1021 1.3 3.3
34..29 0.058 90.6 32.4 0.1420 0.0074 0.0522 0.7 1.7
33..19 0.055 90.6 32.4 0.1420 0.0071 0.0499 0.6 1.6
32..44 0.054 90.6 32.4 0.1420 0.0069 0.0488 0.6 1.6
44..16 0.058 90.6 32.4 0.1420 0.0075 0.0530 0.7 1.7
44..1 0.000 90.6 32.4 0.1420 0.0000 0.0000 0.0 0.0
44..20 0.000 90.6 32.4 0.1420 0.0000 0.0000 0.0 0.0
44..24 0.000 90.6 32.4 0.1420 0.0000 0.0000 0.0 0.0
31..45 0.055 90.6 32.4 0.1420 0.0071 0.0499 0.6 1.6
45..17 0.000 90.6 32.4 0.1420 0.0000 0.0000 0.0 0.0
45..8 0.000 90.6 32.4 0.1420 0.0000 0.0000 0.0 0.0
31..46 0.027 90.6 32.4 0.1420 0.0035 0.0244 0.3 0.8
46..11 0.000 90.6 32.4 0.1420 0.0000 0.0000 0.0 0.0
46..6 0.027 90.6 32.4 0.1420 0.0035 0.0248 0.3 0.8
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C49)
Pr(w>1) post mean +- SE for w
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.015 0.985
p : 0.395 0.567 0.038 0.001 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.004 0.040 0.076 0.087 0.095 0.116 0.153 0.195 0.234
ws: 0.186 0.096 0.090 0.090 0.090 0.090 0.090 0.090 0.090 0.090
Time used: 32:31
Model 1: NearlyNeutral -775.119182 Model 2: PositiveSelection -775.119182 Model 7: beta -771.886416 Model 8: beta&w>1 -771.842643 Model 2 vs 1 0 Model 8 vs 7 .087546
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
