--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -3912.93 -3943.66
2 -3912.49 -3940.39
--------------------------------------
TOTAL -3912.68 -3943.01
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.345104 0.011613 1.145441 1.564780 1.338044 932.30 1121.70 1.000
r(A<->C){all} 0.099136 0.000342 0.064149 0.135875 0.098077 694.89 847.81 1.000
r(A<->G){all} 0.266771 0.000812 0.214946 0.324433 0.266261 542.94 625.13 1.000
r(A<->T){all} 0.098559 0.000197 0.072518 0.126834 0.097827 784.19 802.34 1.000
r(C<->G){all} 0.065230 0.000298 0.034851 0.101220 0.063768 692.86 755.69 1.000
r(C<->T){all} 0.412590 0.001024 0.350835 0.477594 0.412553 683.28 702.99 1.000
r(G<->T){all} 0.057714 0.000146 0.034008 0.081254 0.057307 885.36 903.57 1.000
pi(A){all} 0.281318 0.000197 0.254128 0.307721 0.281212 873.84 888.85 1.000
pi(C){all} 0.181027 0.000135 0.159743 0.205800 0.180691 759.56 809.47 1.000
pi(G){all} 0.213200 0.000169 0.186706 0.236844 0.213186 835.31 988.44 1.000
pi(T){all} 0.324455 0.000203 0.297187 0.351850 0.323977 959.16 978.77 1.000
alpha{1,2} 0.228248 0.001116 0.166583 0.292692 0.224771 1081.73 1196.46 1.000
alpha{3} 2.187992 0.521467 0.987191 3.555824 2.071921 1262.85 1381.93 1.000
pinvar{all} 0.301408 0.002730 0.196323 0.397292 0.304387 991.01 1051.83 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -3122.166428
Model 2: PositiveSelection -3113.921510
Model 7: beta -3114.255331
Model 8: beta&w>1 -3097.692840
Model 2 vs 1 16.489836
Additional information for M1 vs M2:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
23 S 0.935 3.715
24 G 0.945 3.745
25 L 0.993** 3.883
31 N 0.868 3.520
32 S 0.965* 3.802
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
23 S 0.935 3.950 +- 1.262
24 G 0.937 3.936 +- 1.236
25 L 0.991** 4.123 +- 1.064
31 N 0.850 3.625 +- 1.428
32 S 0.963* 4.046 +- 1.170
Model 8 vs 7 33.124982
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
22 Q 0.666 1.861
23 S 0.999** 2.574
24 G 0.999** 2.573
25 L 1.000** 2.575
31 N 0.999** 2.573
32 S 1.000** 2.574
33 R 0.820 2.193
104 Q 0.762 2.068
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
22 Q 0.534 1.741 +- 1.037
23 S 0.993** 2.884 +- 0.700
24 G 0.994** 2.885 +- 0.698
25 L 0.999** 2.896 +- 0.684
31 N 0.988* 2.871 +- 0.710
32 S 0.995** 2.888 +- 0.696
33 R 0.594 1.888 +- 1.007
104 Q 0.567 1.825 +- 1.019
-- Starting log on Wed Nov 09 22:46:28 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Wed Nov 09 22:47:33 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Thu Nov 10 05:42:07 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result/gapped_alignment/codeml,A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 30 taxa and 897 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C67
Taxon 2 -> C66
Taxon 3 -> C11
Taxon 4 -> C14
Taxon 5 -> C13
Taxon 6 -> C16
Taxon 7 -> C19
Taxon 8 -> C20
Taxon 9 -> C78
Taxon 10 -> C22
Taxon 11 -> C58
Taxon 12 -> C30
Taxon 13 -> C60
Taxon 14 -> C1
Taxon 15 -> C21
Taxon 16 -> C12
Taxon 17 -> C61
Taxon 18 -> C36
Taxon 19 -> C99
Taxon 20 -> C72
Taxon 21 -> C38
Taxon 22 -> C81
Taxon 23 -> C27
Taxon 24 -> C100
Taxon 25 -> C32
Taxon 26 -> C88
Taxon 27 -> C2
Taxon 28 -> C5
Taxon 29 -> C89
Taxon 30 -> C26
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1668058929
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 1005835877
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 8048481519
Seed = 985129953
Swapseed = 1668058929
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 80 unique site patterns
Division 2 has 50 unique site patterns
Division 3 has 172 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -10367.594093 -- 82.122948
Chain 2 -- -10263.667612 -- 82.122948
Chain 3 -- -10213.294678 -- 82.122948
Chain 4 -- -10038.123965 -- 82.122948
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -9477.206745 -- 82.122948
Chain 2 -- -10387.225533 -- 82.122948
Chain 3 -- -10167.708751 -- 82.122948
Chain 4 -- -10094.820102 -- 82.122948
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-10367.594] (-10263.668) (-10213.295) (-10038.124) * [-9477.207] (-10387.226) (-10167.709) (-10094.820)
1000 -- (-4260.164) (-4263.782) [-4192.610] (-4434.431) * [-4148.921] (-4445.387) (-4272.058) (-4354.350) -- 0:16:39
2000 -- [-3969.120] (-4017.777) (-3989.081) (-4009.054) * [-3975.281] (-4142.016) (-4003.153) (-4038.373) -- 0:24:57
3000 -- [-3925.001] (-3958.851) (-3946.706) (-3957.550) * [-3942.370] (-4041.575) (-3945.601) (-3959.321) -- 0:33:14
4000 -- [-3926.488] (-3936.409) (-3925.308) (-3934.629) * (-3931.299) (-3972.738) [-3937.340] (-3929.923) -- 0:33:12
5000 -- (-3934.287) (-3932.915) (-3948.510) [-3944.876] * (-3938.421) (-3939.317) (-3945.584) [-3927.414] -- 0:33:10
Average standard deviation of split frequencies: 0.066162
6000 -- [-3933.173] (-3938.164) (-3953.914) (-3934.843) * [-3919.379] (-3931.459) (-3946.612) (-3936.512) -- 0:33:08
7000 -- (-3927.042) [-3922.121] (-3936.358) (-3942.780) * (-3939.955) [-3929.011] (-3948.200) (-3953.597) -- 0:30:44
8000 -- (-3924.423) (-3931.255) [-3935.954] (-3934.494) * (-3941.513) (-3933.637) (-3936.297) [-3920.492] -- 0:31:00
9000 -- (-3917.584) (-3935.273) [-3927.581] (-3929.863) * (-3945.610) [-3920.907] (-3927.069) (-3951.755) -- 0:31:11
10000 -- [-3924.105] (-3933.757) (-3933.678) (-3932.020) * [-3920.502] (-3934.659) (-3940.503) (-3921.604) -- 0:31:21
Average standard deviation of split frequencies: 0.073911
11000 -- (-3915.877) [-3922.533] (-3939.817) (-3939.213) * (-3953.314) (-3930.885) (-3937.144) [-3916.243] -- 0:31:28
12000 -- [-3916.293] (-3915.256) (-3917.758) (-3947.795) * [-3919.542] (-3936.582) (-3918.995) (-3924.185) -- 0:31:33
13000 -- [-3910.083] (-3927.599) (-3939.428) (-3935.007) * (-3945.309) (-3929.849) (-3936.918) [-3926.029] -- 0:31:38
14000 -- (-3916.365) [-3928.650] (-3922.313) (-3921.170) * (-3928.615) [-3913.627] (-3922.464) (-3929.609) -- 0:31:41
15000 -- (-3928.911) (-3938.070) (-3944.523) [-3924.148] * (-3944.728) [-3920.212] (-3926.471) (-3945.779) -- 0:31:44
Average standard deviation of split frequencies: 0.051306
16000 -- (-3922.440) [-3929.623] (-3932.739) (-3925.225) * (-3933.649) (-3939.329) [-3933.590] (-3931.473) -- 0:31:46
17000 -- (-3919.311) (-3946.599) (-3930.753) [-3919.175] * (-3928.767) (-3944.602) (-3942.340) [-3930.928] -- 0:31:48
18000 -- (-3940.542) [-3934.338] (-3936.286) (-3925.220) * (-3925.426) (-3926.738) [-3917.857] (-3947.756) -- 0:31:49
19000 -- (-3937.422) [-3933.987] (-3918.989) (-3921.088) * [-3919.866] (-3941.601) (-3918.601) (-3933.733) -- 0:31:50
20000 -- (-3942.348) (-3935.553) (-3928.332) [-3924.669] * (-3929.716) (-3942.110) (-3936.124) [-3924.798] -- 0:31:51
Average standard deviation of split frequencies: 0.048938
21000 -- (-3920.567) (-3944.736) (-3924.532) [-3915.052] * [-3926.020] (-3928.328) (-3944.596) (-3926.504) -- 0:31:51
22000 -- (-3927.173) (-3938.986) (-3930.595) [-3927.212] * (-3946.179) (-3927.728) [-3921.883] (-3946.455) -- 0:31:51
23000 -- (-3931.424) (-3935.233) (-3938.542) [-3926.822] * (-3952.946) (-3923.580) [-3922.096] (-3936.491) -- 0:31:51
24000 -- [-3924.146] (-3938.975) (-3940.836) (-3950.379) * (-3944.480) (-3925.610) (-3919.449) [-3928.127] -- 0:31:51
25000 -- (-3924.686) [-3928.799] (-3919.911) (-3958.242) * (-3935.260) (-3924.680) [-3925.278] (-3919.048) -- 0:31:51
Average standard deviation of split frequencies: 0.050767
26000 -- [-3926.846] (-3929.899) (-3930.462) (-3938.326) * [-3928.533] (-3931.358) (-3938.420) (-3926.282) -- 0:31:50
27000 -- [-3920.350] (-3926.633) (-3920.673) (-3936.733) * (-3937.480) (-3923.291) (-3930.703) [-3919.318] -- 0:31:49
28000 -- (-3922.506) [-3930.773] (-3935.675) (-3953.410) * (-3927.899) (-3930.711) (-3953.475) [-3925.169] -- 0:31:49
29000 -- [-3928.518] (-3941.259) (-3913.997) (-3928.570) * (-3932.066) (-3921.421) [-3930.992] (-3925.982) -- 0:31:48
30000 -- (-3939.389) [-3923.116] (-3944.178) (-3936.190) * (-3946.139) (-3942.360) (-3927.494) [-3918.838] -- 0:31:47
Average standard deviation of split frequencies: 0.051151
31000 -- (-3915.097) [-3924.338] (-3934.161) (-3932.253) * (-3933.610) (-3936.704) [-3938.735] (-3924.841) -- 0:31:46
32000 -- [-3911.713] (-3937.831) (-3927.737) (-3934.683) * [-3929.695] (-3956.182) (-3943.783) (-3928.291) -- 0:31:45
33000 -- (-3925.113) [-3921.801] (-3940.996) (-3915.502) * (-3926.833) (-3939.000) (-3939.065) [-3925.616] -- 0:31:44
34000 -- (-3935.194) (-3940.841) [-3930.468] (-3915.945) * (-3934.847) (-3935.871) [-3919.442] (-3938.756) -- 0:31:43
35000 -- [-3923.712] (-3927.478) (-3940.163) (-3952.943) * (-3920.554) [-3927.670] (-3916.520) (-3937.942) -- 0:31:42
Average standard deviation of split frequencies: 0.041122
36000 -- [-3920.485] (-3924.574) (-3928.308) (-3924.191) * (-3925.914) (-3928.762) (-3930.834) [-3933.802] -- 0:31:41
37000 -- (-3936.632) (-3939.479) [-3932.579] (-3917.057) * (-3921.024) (-3946.860) (-3935.836) [-3937.689] -- 0:31:39
38000 -- [-3931.207] (-3942.342) (-3925.840) (-3941.467) * (-3933.325) (-3949.601) [-3918.089] (-3929.574) -- 0:31:38
39000 -- (-3935.798) (-3923.955) (-3930.360) [-3930.402] * (-3934.308) [-3933.629] (-3935.842) (-3940.435) -- 0:31:37
40000 -- (-3926.316) (-3942.316) (-3928.054) [-3930.767] * (-3930.271) [-3927.988] (-3931.605) (-3921.675) -- 0:31:36
Average standard deviation of split frequencies: 0.035793
41000 -- (-3939.951) [-3923.842] (-3925.867) (-3949.818) * (-3931.030) [-3934.205] (-3923.665) (-3929.822) -- 0:31:34
42000 -- (-3936.911) (-3941.561) [-3912.257] (-3936.712) * (-3931.064) (-3923.806) [-3937.038] (-3931.663) -- 0:31:33
43000 -- (-3948.941) (-3927.837) [-3918.205] (-3920.655) * (-3930.339) (-3940.310) [-3930.324] (-3929.025) -- 0:31:31
44000 -- (-3935.454) [-3922.582] (-3937.222) (-3943.646) * (-3941.400) [-3925.568] (-3926.813) (-3919.972) -- 0:31:30
45000 -- (-3934.351) (-3916.314) [-3930.306] (-3925.158) * [-3930.251] (-3934.285) (-3940.736) (-3926.883) -- 0:31:28
Average standard deviation of split frequencies: 0.033041
46000 -- (-3936.570) [-3914.411] (-3945.545) (-3926.187) * (-3936.292) (-3932.352) (-3943.670) [-3933.025] -- 0:31:27
47000 -- (-3935.686) [-3919.274] (-3938.692) (-3918.182) * (-3936.507) [-3924.570] (-3924.758) (-3931.616) -- 0:31:25
48000 -- (-3926.983) [-3920.657] (-3936.967) (-3923.889) * (-3933.093) (-3928.470) [-3938.756] (-3931.154) -- 0:31:24
49000 -- (-3935.128) (-3940.503) (-3927.526) [-3921.476] * [-3919.733] (-3926.803) (-3949.204) (-3935.941) -- 0:31:22
50000 -- [-3929.791] (-3937.428) (-3927.206) (-3935.907) * (-3948.276) [-3930.339] (-3941.906) (-3941.041) -- 0:31:21
Average standard deviation of split frequencies: 0.032404
51000 -- [-3923.334] (-3921.541) (-3938.749) (-3933.073) * (-3939.830) (-3929.654) [-3926.610] (-3956.650) -- 0:31:19
52000 -- (-3937.648) [-3924.137] (-3922.971) (-3938.580) * (-3930.962) (-3916.018) (-3937.408) [-3921.160] -- 0:31:17
53000 -- (-3926.591) (-3929.394) (-3934.727) [-3915.422] * (-3925.441) [-3922.302] (-3921.842) (-3927.799) -- 0:31:16
54000 -- (-3925.808) [-3936.696] (-3937.278) (-3944.256) * (-3942.250) (-3922.950) (-3919.934) [-3924.668] -- 0:31:14
55000 -- [-3941.745] (-3937.554) (-3933.590) (-3932.305) * (-3949.048) [-3921.688] (-3928.284) (-3916.822) -- 0:31:12
Average standard deviation of split frequencies: 0.032245
56000 -- (-3942.987) (-3941.565) [-3924.152] (-3935.213) * (-3928.324) [-3925.146] (-3925.666) (-3931.042) -- 0:31:11
57000 -- (-3947.997) (-3938.642) [-3930.545] (-3929.884) * (-3949.889) [-3930.394] (-3939.644) (-3939.175) -- 0:31:09
58000 -- (-3928.866) [-3918.564] (-3951.830) (-3925.977) * (-3925.312) (-3938.889) [-3917.857] (-3926.702) -- 0:31:07
59000 -- [-3927.339] (-3921.848) (-3930.995) (-3929.957) * (-3933.914) (-3938.621) (-3927.609) [-3926.327] -- 0:31:06
60000 -- [-3937.661] (-3923.832) (-3915.717) (-3935.281) * (-3929.810) [-3921.061] (-3926.873) (-3929.919) -- 0:31:04
Average standard deviation of split frequencies: 0.026310
61000 -- (-3933.268) [-3927.435] (-3924.726) (-3943.705) * [-3929.684] (-3923.424) (-3933.304) (-3946.584) -- 0:31:02
62000 -- (-3918.975) (-3934.649) [-3919.579] (-3953.964) * (-3946.838) [-3924.090] (-3926.039) (-3926.884) -- 0:31:00
63000 -- (-3938.147) (-3930.667) [-3909.911] (-3941.777) * (-3933.395) (-3926.635) (-3921.356) [-3922.579] -- 0:30:59
64000 -- (-3938.010) (-3922.284) [-3929.708] (-3945.974) * (-3944.733) (-3928.533) (-3929.312) [-3916.986] -- 0:30:57
65000 -- (-3923.805) (-3926.649) [-3928.208] (-3934.326) * [-3926.970] (-3928.457) (-3921.856) (-3932.299) -- 0:30:55
Average standard deviation of split frequencies: 0.027238
66000 -- (-3946.910) (-3931.750) [-3924.051] (-3932.982) * (-3934.225) (-3938.518) [-3932.259] (-3943.702) -- 0:30:53
67000 -- (-3924.055) [-3934.351] (-3924.314) (-3927.318) * (-3930.836) (-3923.880) [-3929.420] (-3954.187) -- 0:30:52
68000 -- (-3934.495) (-3966.830) [-3936.711] (-3938.096) * (-3939.391) (-3947.623) (-3931.346) [-3936.850] -- 0:30:50
69000 -- (-3930.045) (-3939.520) (-3956.513) [-3935.471] * [-3919.949] (-3930.302) (-3937.808) (-3934.848) -- 0:30:48
70000 -- (-3938.733) (-3943.295) (-3937.935) [-3914.498] * (-3925.767) [-3922.922] (-3929.959) (-3942.086) -- 0:30:46
Average standard deviation of split frequencies: 0.025326
71000 -- (-3929.574) (-3945.362) (-3931.907) [-3926.888] * (-3921.213) [-3935.097] (-3934.245) (-3946.378) -- 0:30:44
72000 -- (-3929.768) (-3937.806) [-3917.571] (-3933.958) * (-3917.313) (-3926.786) (-3946.303) [-3938.976] -- 0:30:43
73000 -- (-3925.641) (-3941.734) [-3931.822] (-3921.114) * (-3924.020) [-3918.333] (-3930.885) (-3933.935) -- 0:30:41
74000 -- (-3943.509) (-3933.450) (-3925.114) [-3918.067] * (-3925.239) (-3942.417) [-3928.780] (-3924.200) -- 0:30:39
75000 -- (-3936.766) (-3932.846) [-3919.027] (-3936.938) * (-3922.613) (-3931.956) (-3950.556) [-3913.883] -- 0:30:37
Average standard deviation of split frequencies: 0.022743
76000 -- (-3925.977) (-3931.953) (-3938.120) [-3929.275] * (-3939.538) [-3922.898] (-3935.257) (-3924.797) -- 0:30:35
77000 -- [-3923.862] (-3930.342) (-3950.044) (-3939.419) * (-3935.982) (-3940.849) [-3917.928] (-3931.807) -- 0:30:34
78000 -- (-3926.548) (-3939.629) (-3928.839) [-3921.995] * (-3940.576) [-3930.150] (-3931.183) (-3933.878) -- 0:30:32
79000 -- (-3943.016) (-3930.088) (-3923.946) [-3928.090] * (-3936.388) (-3933.193) [-3921.477] (-3933.839) -- 0:30:30
80000 -- (-3921.381) (-3934.176) [-3914.215] (-3912.794) * [-3931.020] (-3934.932) (-3937.906) (-3928.406) -- 0:30:28
Average standard deviation of split frequencies: 0.021530
81000 -- (-3938.657) (-3934.017) [-3922.580] (-3934.705) * [-3917.694] (-3936.655) (-3936.056) (-3933.570) -- 0:30:26
82000 -- (-3937.436) (-3944.908) [-3921.117] (-3938.657) * [-3925.784] (-3932.875) (-3944.308) (-3919.113) -- 0:30:24
83000 -- [-3914.476] (-3937.845) (-3948.182) (-3942.544) * (-3939.056) (-3938.895) [-3924.364] (-3929.572) -- 0:30:22
84000 -- (-3918.085) [-3927.487] (-3938.297) (-3932.218) * (-3941.466) [-3925.512] (-3915.484) (-3932.024) -- 0:30:21
85000 -- (-3927.906) (-3932.762) [-3913.460] (-3938.840) * (-3940.287) [-3930.343] (-3925.661) (-3924.750) -- 0:30:19
Average standard deviation of split frequencies: 0.021445
86000 -- [-3923.327] (-3926.669) (-3921.643) (-3943.078) * [-3932.243] (-3934.190) (-3934.448) (-3921.658) -- 0:30:17
87000 -- [-3926.051] (-3929.257) (-3930.022) (-3948.602) * (-3933.096) (-3954.563) [-3944.834] (-3922.498) -- 0:30:15
88000 -- (-3932.188) (-3938.023) [-3927.103] (-3947.407) * (-3928.228) [-3930.798] (-3931.183) (-3920.452) -- 0:30:13
89000 -- (-3938.679) [-3921.853] (-3931.800) (-3929.279) * (-3941.278) (-3929.876) (-3928.158) [-3910.394] -- 0:30:11
90000 -- (-3940.184) (-3918.538) (-3931.622) [-3923.157] * (-3924.728) (-3931.846) [-3928.785] (-3933.583) -- 0:30:09
Average standard deviation of split frequencies: 0.021354
91000 -- (-3938.408) (-3919.294) [-3926.543] (-3936.681) * (-3940.547) (-3929.907) (-3921.169) [-3920.999] -- 0:30:08
92000 -- (-3923.894) [-3919.592] (-3941.834) (-3930.502) * (-3947.626) [-3925.016] (-3921.955) (-3932.104) -- 0:30:06
93000 -- (-3941.509) [-3927.543] (-3925.296) (-3918.701) * [-3925.147] (-3935.786) (-3933.392) (-3934.812) -- 0:30:04
94000 -- (-3937.583) (-3922.431) [-3928.674] (-3921.961) * [-3920.371] (-3933.222) (-3945.007) (-3930.980) -- 0:30:02
95000 -- (-3936.804) (-3928.799) [-3914.291] (-3948.716) * (-3932.028) [-3947.791] (-3930.925) (-3935.392) -- 0:30:00
Average standard deviation of split frequencies: 0.020733
96000 -- (-3927.082) (-3931.903) [-3925.888] (-3948.286) * [-3925.094] (-3937.210) (-3943.471) (-3940.924) -- 0:29:58
97000 -- (-3930.754) [-3931.949] (-3919.992) (-3925.522) * (-3925.457) [-3932.815] (-3929.076) (-3929.928) -- 0:29:56
98000 -- (-3927.613) (-3930.601) (-3938.070) [-3930.664] * (-3927.300) [-3921.287] (-3940.469) (-3926.913) -- 0:29:54
99000 -- (-3923.628) (-3921.324) (-3952.944) [-3915.344] * [-3927.825] (-3926.533) (-3939.090) (-3918.766) -- 0:29:52
100000 -- (-3935.810) (-3939.849) [-3940.284] (-3926.916) * (-3918.961) (-3943.504) (-3947.686) [-3914.179] -- 0:29:51
Average standard deviation of split frequencies: 0.018987
101000 -- [-3926.042] (-3925.023) (-3941.809) (-3940.109) * (-3925.879) (-3932.511) [-3939.760] (-3935.735) -- 0:29:49
102000 -- [-3925.579] (-3931.176) (-3941.607) (-3935.114) * [-3930.456] (-3940.798) (-3947.701) (-3930.321) -- 0:29:47
103000 -- (-3930.951) [-3918.678] (-3935.936) (-3928.807) * (-3937.597) [-3933.537] (-3941.390) (-3925.934) -- 0:29:45
104000 -- (-3943.596) [-3922.332] (-3927.027) (-3935.786) * (-3928.247) [-3924.929] (-3930.740) (-3933.049) -- 0:29:43
105000 -- (-3932.500) (-3925.948) (-3913.519) [-3921.537] * (-3913.071) (-3924.541) (-3929.860) [-3929.042] -- 0:29:41
Average standard deviation of split frequencies: 0.016495
106000 -- (-3940.485) (-3938.171) (-3923.391) [-3931.218] * (-3934.831) (-3930.556) (-3934.324) [-3926.966] -- 0:29:39
107000 -- [-3929.111] (-3922.179) (-3927.281) (-3915.337) * [-3922.126] (-3931.236) (-3930.264) (-3927.170) -- 0:29:37
108000 -- (-3929.581) (-3941.615) (-3932.316) [-3930.600] * (-3932.610) (-3936.720) (-3926.811) [-3925.272] -- 0:29:35
109000 -- [-3919.709] (-3946.006) (-3948.415) (-3932.174) * (-3940.745) (-3937.604) [-3916.523] (-3931.258) -- 0:29:33
110000 -- [-3920.449] (-3927.870) (-3933.065) (-3934.069) * (-3931.312) (-3928.028) (-3921.496) [-3917.363] -- 0:29:31
Average standard deviation of split frequencies: 0.015877
111000 -- (-3937.737) (-3943.342) [-3917.269] (-3924.994) * (-3928.485) (-3928.957) (-3934.527) [-3924.180] -- 0:29:29
112000 -- (-3928.021) (-3942.526) [-3925.564] (-3931.256) * [-3931.521] (-3946.344) (-3927.574) (-3924.556) -- 0:29:28
113000 -- [-3922.046] (-3942.191) (-3929.590) (-3927.107) * [-3918.210] (-3934.243) (-3931.225) (-3931.779) -- 0:29:26
114000 -- (-3920.753) (-3941.833) [-3921.681] (-3926.533) * (-3937.117) [-3933.252] (-3929.409) (-3914.296) -- 0:29:24
115000 -- (-3928.964) (-3940.969) [-3921.952] (-3914.435) * (-3938.198) (-3939.750) [-3922.741] (-3927.944) -- 0:29:22
Average standard deviation of split frequencies: 0.016180
116000 -- (-3925.699) (-3942.633) (-3932.659) [-3925.022] * [-3931.944] (-3946.040) (-3928.208) (-3925.486) -- 0:29:20
117000 -- (-3931.416) (-3931.738) (-3936.675) [-3909.698] * (-3929.916) (-3918.429) (-3917.604) [-3932.916] -- 0:29:18
118000 -- (-3931.593) (-3942.750) (-3939.538) [-3917.629] * [-3929.565] (-3920.643) (-3931.714) (-3951.959) -- 0:29:16
119000 -- (-3931.213) (-3932.272) (-3936.616) [-3919.687] * [-3930.920] (-3932.387) (-3924.273) (-3923.916) -- 0:29:14
120000 -- [-3926.708] (-3941.407) (-3929.972) (-3940.961) * (-3939.544) (-3939.101) [-3927.422] (-3924.861) -- 0:29:12
Average standard deviation of split frequencies: 0.016567
121000 -- (-3924.765) (-3941.221) (-3933.169) [-3927.860] * (-3934.003) (-3939.939) (-3929.928) [-3922.258] -- 0:29:10
122000 -- (-3936.595) (-3935.921) [-3929.386] (-3922.691) * (-3930.793) (-3933.207) (-3932.866) [-3920.017] -- 0:29:08
123000 -- (-3929.393) [-3916.656] (-3928.491) (-3937.163) * (-3933.817) (-3944.700) [-3916.740] (-3920.127) -- 0:29:06
124000 -- (-3926.927) [-3922.675] (-3933.750) (-3938.358) * (-3953.544) (-3929.906) [-3921.805] (-3938.977) -- 0:29:04
125000 -- (-3931.283) [-3930.240] (-3933.304) (-3922.749) * (-3966.971) (-3935.491) [-3932.432] (-3931.133) -- 0:29:02
Average standard deviation of split frequencies: 0.015577
126000 -- [-3938.202] (-3915.335) (-3939.483) (-3945.782) * (-3938.825) (-3926.256) (-3918.362) [-3920.954] -- 0:29:01
127000 -- (-3931.287) (-3936.864) [-3920.360] (-3948.395) * (-3930.765) [-3922.958] (-3920.012) (-3946.949) -- 0:28:59
128000 -- [-3918.455] (-3955.147) (-3935.355) (-3931.888) * (-3940.265) (-3925.724) (-3940.537) [-3930.702] -- 0:28:57
129000 -- (-3932.670) (-3929.373) (-3921.160) [-3918.564] * (-3938.426) (-3928.952) [-3926.607] (-3928.677) -- 0:28:55
130000 -- [-3928.907] (-3930.609) (-3932.326) (-3937.292) * (-3927.814) (-3927.192) [-3928.547] (-3934.281) -- 0:28:53
Average standard deviation of split frequencies: 0.015567
131000 -- (-3925.092) [-3924.337] (-3937.985) (-3912.882) * [-3924.421] (-3933.712) (-3942.023) (-3929.476) -- 0:28:51
132000 -- (-3934.791) (-3928.173) (-3929.908) [-3935.985] * (-3931.780) [-3926.424] (-3936.003) (-3930.250) -- 0:28:49
133000 -- (-3930.079) [-3922.139] (-3929.137) (-3933.524) * (-3928.345) (-3933.453) (-3924.373) [-3925.511] -- 0:28:47
134000 -- (-3937.844) (-3927.371) [-3928.628] (-3931.158) * (-3922.017) (-3936.630) (-3946.293) [-3921.692] -- 0:28:45
135000 -- (-3929.444) (-3923.857) [-3926.954] (-3930.192) * (-3949.438) (-3922.032) (-3934.925) [-3925.085] -- 0:28:43
Average standard deviation of split frequencies: 0.014306
136000 -- [-3924.334] (-3926.578) (-3921.277) (-3921.307) * (-3931.865) (-3943.589) (-3935.478) [-3924.220] -- 0:28:41
137000 -- (-3941.661) [-3923.240] (-3947.491) (-3944.994) * [-3924.531] (-3944.724) (-3928.069) (-3931.232) -- 0:28:39
138000 -- (-3933.495) (-3929.148) (-3933.772) [-3924.094] * [-3928.463] (-3947.938) (-3924.192) (-3922.027) -- 0:28:37
139000 -- (-3922.784) [-3915.238] (-3934.439) (-3935.342) * [-3924.944] (-3932.112) (-3937.231) (-3939.109) -- 0:28:35
140000 -- (-3933.474) [-3916.579] (-3928.127) (-3949.286) * (-3922.539) (-3938.215) (-3934.999) [-3922.712] -- 0:28:33
Average standard deviation of split frequencies: 0.014398
141000 -- (-3918.645) [-3921.854] (-3923.167) (-3934.781) * (-3938.786) [-3923.865] (-3927.467) (-3935.819) -- 0:28:31
142000 -- (-3924.508) [-3915.209] (-3926.863) (-3938.434) * (-3926.131) (-3930.897) (-3927.712) [-3922.569] -- 0:28:29
143000 -- [-3918.170] (-3928.688) (-3945.342) (-3928.984) * [-3920.234] (-3928.825) (-3922.796) (-3926.318) -- 0:28:28
144000 -- [-3922.127] (-3935.129) (-3934.507) (-3935.276) * (-3935.492) (-3939.071) (-3935.086) [-3917.837] -- 0:28:26
145000 -- (-3931.975) [-3918.458] (-3947.262) (-3921.007) * [-3926.547] (-3927.143) (-3933.181) (-3920.182) -- 0:28:24
Average standard deviation of split frequencies: 0.013796
146000 -- [-3920.727] (-3925.777) (-3939.016) (-3936.550) * (-3926.888) (-3925.934) (-3928.526) [-3937.824] -- 0:28:22
147000 -- [-3913.819] (-3927.628) (-3932.545) (-3953.504) * [-3940.788] (-3931.033) (-3944.142) (-3943.028) -- 0:28:20
148000 -- (-3925.531) [-3919.098] (-3932.524) (-3936.008) * (-3936.140) (-3927.738) [-3928.209] (-3946.557) -- 0:28:18
149000 -- (-3927.469) [-3922.091] (-3921.857) (-3935.301) * (-3947.939) (-3929.330) (-3934.876) [-3933.272] -- 0:28:16
150000 -- (-3932.831) [-3925.254] (-3946.110) (-3949.127) * [-3929.210] (-3923.979) (-3933.912) (-3918.702) -- 0:28:14
Average standard deviation of split frequencies: 0.013873
151000 -- (-3961.584) (-3920.182) (-3945.193) [-3928.167] * (-3916.458) [-3918.010] (-3933.972) (-3929.574) -- 0:28:12
152000 -- (-3931.591) (-3934.471) [-3930.744] (-3935.084) * (-3930.149) (-3948.798) [-3928.678] (-3926.062) -- 0:28:10
153000 -- (-3930.247) (-3933.276) [-3920.888] (-3929.455) * [-3925.483] (-3933.185) (-3943.037) (-3921.589) -- 0:28:08
154000 -- [-3926.675] (-3931.943) (-3933.035) (-3924.572) * (-3933.425) (-3931.663) (-3936.860) [-3920.493] -- 0:28:06
155000 -- (-3935.770) [-3924.985] (-3950.533) (-3922.673) * (-3923.852) (-3933.656) (-3939.813) [-3921.373] -- 0:28:04
Average standard deviation of split frequencies: 0.014653
156000 -- (-3923.522) [-3928.531] (-3924.260) (-3929.475) * (-3925.087) [-3933.271] (-3937.017) (-3939.693) -- 0:28:02
157000 -- [-3927.232] (-3932.509) (-3926.770) (-3953.076) * [-3921.143] (-3939.657) (-3936.661) (-3937.671) -- 0:28:00
158000 -- [-3919.580] (-3941.795) (-3938.788) (-3931.469) * [-3926.204] (-3929.685) (-3928.291) (-3924.251) -- 0:27:58
159000 -- (-3943.310) (-3921.382) [-3927.425] (-3928.362) * [-3909.794] (-3942.878) (-3927.039) (-3937.202) -- 0:27:56
160000 -- (-3936.361) (-3931.595) (-3936.982) [-3931.818] * (-3924.584) (-3942.613) (-3916.292) [-3925.621] -- 0:27:54
Average standard deviation of split frequencies: 0.014445
161000 -- (-3926.880) (-3952.404) (-3922.130) [-3921.503] * [-3916.125] (-3933.397) (-3921.650) (-3927.218) -- 0:27:52
162000 -- (-3933.247) (-3949.598) (-3938.856) [-3926.185] * (-3927.331) [-3927.224] (-3942.688) (-3933.060) -- 0:27:50
163000 -- (-3936.133) (-3939.902) [-3926.123] (-3935.477) * [-3916.387] (-3918.036) (-3940.222) (-3941.027) -- 0:27:48
164000 -- [-3934.173] (-3929.231) (-3935.907) (-3946.208) * (-3924.122) (-3928.386) (-3940.521) [-3919.998] -- 0:27:46
165000 -- (-3922.496) (-3934.558) (-3949.946) [-3925.861] * [-3935.439] (-3915.321) (-3937.833) (-3916.892) -- 0:27:44
Average standard deviation of split frequencies: 0.013883
166000 -- [-3934.506] (-3928.851) (-3924.899) (-3929.650) * (-3936.710) (-3923.974) (-3923.706) [-3924.136] -- 0:27:42
167000 -- (-3932.252) [-3917.656] (-3933.034) (-3952.653) * (-3939.460) (-3932.734) (-3922.288) [-3914.427] -- 0:27:41
168000 -- [-3919.320] (-3919.335) (-3921.825) (-3945.289) * (-3946.335) (-3932.882) (-3933.519) [-3922.870] -- 0:27:39
169000 -- (-3918.868) (-3929.663) (-3923.223) [-3930.194] * (-3937.729) [-3935.882] (-3926.817) (-3944.994) -- 0:27:37
170000 -- [-3933.686] (-3930.504) (-3912.436) (-3930.290) * (-3920.266) (-3937.561) [-3925.998] (-3933.099) -- 0:27:35
Average standard deviation of split frequencies: 0.012695
171000 -- [-3932.021] (-3941.264) (-3929.906) (-3920.288) * [-3918.578] (-3931.332) (-3947.605) (-3934.886) -- 0:27:33
172000 -- (-3947.091) (-3942.672) [-3918.164] (-3913.359) * (-3929.329) (-3928.450) [-3931.719] (-3944.641) -- 0:27:31
173000 -- (-3938.542) (-3942.634) (-3931.754) [-3924.536] * (-3921.527) (-3933.999) [-3914.925] (-3924.767) -- 0:27:29
174000 -- (-3937.041) (-3933.953) (-3931.572) [-3915.258] * [-3912.931] (-3934.651) (-3934.858) (-3927.542) -- 0:27:27
175000 -- [-3912.570] (-3934.296) (-3939.256) (-3924.974) * [-3920.413] (-3935.400) (-3916.339) (-3942.740) -- 0:27:25
Average standard deviation of split frequencies: 0.011692
176000 -- [-3919.575] (-3926.775) (-3950.389) (-3951.554) * [-3931.338] (-3938.160) (-3920.547) (-3951.762) -- 0:27:23
177000 -- [-3916.321] (-3941.075) (-3925.108) (-3916.839) * [-3933.224] (-3954.917) (-3923.607) (-3932.400) -- 0:27:21
178000 -- (-3935.494) (-3925.036) [-3918.815] (-3933.912) * [-3930.491] (-3949.310) (-3932.567) (-3926.635) -- 0:27:19
179000 -- (-3936.015) (-3933.413) [-3917.166] (-3942.605) * (-3946.112) (-3929.412) (-3942.367) [-3935.143] -- 0:27:17
180000 -- (-3924.028) (-3930.446) [-3930.915] (-3928.980) * (-3944.230) (-3927.614) (-3941.915) [-3924.453] -- 0:27:15
Average standard deviation of split frequencies: 0.012946
181000 -- [-3920.761] (-3938.734) (-3929.298) (-3937.467) * (-3933.700) (-3932.824) [-3925.511] (-3929.634) -- 0:27:13
182000 -- [-3923.032] (-3924.885) (-3940.388) (-3945.867) * [-3927.602] (-3934.780) (-3924.352) (-3931.400) -- 0:27:11
183000 -- (-3927.836) (-3939.580) (-3930.227) [-3923.091] * (-3933.963) (-3933.624) [-3935.187] (-3939.545) -- 0:27:09
184000 -- (-3943.261) (-3931.788) (-3939.582) [-3920.413] * (-3922.880) [-3930.944] (-3954.559) (-3929.951) -- 0:27:07
185000 -- [-3936.421] (-3930.755) (-3921.818) (-3937.280) * (-3929.599) [-3912.476] (-3931.827) (-3930.717) -- 0:27:05
Average standard deviation of split frequencies: 0.012380
186000 -- [-3936.002] (-3922.260) (-3918.432) (-3952.626) * (-3934.142) (-3924.919) (-3934.082) [-3921.706] -- 0:27:03
187000 -- (-3933.549) (-3911.256) [-3922.138] (-3946.388) * (-3936.481) [-3924.770] (-3931.819) (-3924.029) -- 0:27:01
188000 -- [-3931.025] (-3920.501) (-3935.662) (-3938.220) * [-3926.395] (-3944.528) (-3928.783) (-3938.601) -- 0:26:59
189000 -- [-3914.593] (-3933.916) (-3930.846) (-3923.620) * (-3921.301) [-3934.413] (-3928.037) (-3928.588) -- 0:26:57
190000 -- (-3926.607) (-3944.646) [-3913.874] (-3941.922) * (-3940.081) (-3928.390) (-3941.157) [-3914.548] -- 0:26:55
Average standard deviation of split frequencies: 0.010650
191000 -- (-3938.407) (-3927.170) (-3919.628) [-3923.231] * (-3926.077) [-3918.146] (-3930.811) (-3932.639) -- 0:26:53
192000 -- [-3931.832] (-3934.287) (-3939.762) (-3923.656) * (-3925.394) [-3925.064] (-3943.026) (-3933.364) -- 0:26:51
193000 -- (-3935.228) [-3948.890] (-3931.882) (-3927.998) * (-3933.972) [-3928.409] (-3937.836) (-3934.958) -- 0:26:49
194000 -- [-3914.967] (-3944.207) (-3922.589) (-3930.131) * (-3920.909) (-3924.512) (-3944.589) [-3925.972] -- 0:26:47
195000 -- (-3919.806) (-3964.734) (-3915.762) [-3928.573] * (-3931.335) [-3918.460] (-3939.528) (-3930.391) -- 0:26:50
Average standard deviation of split frequencies: 0.011471
196000 -- (-3915.872) (-3952.560) (-3930.517) [-3923.985] * (-3927.629) (-3922.637) (-3932.168) [-3927.259] -- 0:26:43
197000 -- (-3917.111) (-3950.904) [-3929.460] (-3942.641) * [-3935.607] (-3937.005) (-3928.635) (-3927.888) -- 0:26:41
198000 -- (-3922.817) [-3917.290] (-3936.211) (-3950.631) * (-3942.092) (-3931.670) [-3931.531] (-3930.715) -- 0:26:39
199000 -- (-3931.762) (-3950.449) (-3928.141) [-3930.648] * (-3947.988) [-3930.379] (-3931.692) (-3927.765) -- 0:26:37
200000 -- (-3941.758) (-3945.076) (-3937.772) [-3927.549] * (-3938.471) [-3911.889] (-3936.468) (-3941.998) -- 0:26:35
Average standard deviation of split frequencies: 0.012062
201000 -- (-3928.710) (-3945.410) [-3923.261] (-3927.162) * [-3929.480] (-3921.190) (-3924.110) (-3926.571) -- 0:26:34
202000 -- [-3927.792] (-3927.858) (-3948.992) (-3928.293) * (-3940.366) (-3933.546) (-3931.940) [-3913.122] -- 0:26:36
203000 -- (-3921.199) (-3923.958) [-3923.350] (-3916.018) * (-3922.932) (-3938.939) (-3930.816) [-3916.131] -- 0:26:30
204000 -- (-3927.413) (-3924.087) [-3917.438] (-3931.779) * [-3917.940] (-3923.751) (-3936.069) (-3925.083) -- 0:26:28
205000 -- (-3926.392) (-3924.381) [-3922.653] (-3938.508) * (-3938.525) (-3932.874) [-3923.801] (-3944.956) -- 0:26:26
Average standard deviation of split frequencies: 0.010738
206000 -- (-3937.763) (-3936.173) [-3915.813] (-3927.742) * (-3931.818) (-3955.643) (-3921.221) [-3927.553] -- 0:26:24
207000 -- (-3932.257) (-3930.561) (-3935.677) [-3923.265] * (-3916.473) (-3940.868) [-3927.436] (-3930.885) -- 0:26:22
208000 -- (-3935.011) (-3946.865) (-3934.266) [-3924.222] * [-3927.718] (-3947.183) (-3929.391) (-3930.251) -- 0:26:20
209000 -- [-3930.284] (-3943.843) (-3933.380) (-3943.892) * (-3925.806) [-3929.287] (-3930.085) (-3938.000) -- 0:26:18
210000 -- [-3933.956] (-3940.410) (-3928.472) (-3950.928) * (-3923.201) (-3930.664) [-3922.850] (-3931.106) -- 0:26:16
Average standard deviation of split frequencies: 0.010156
211000 -- (-3937.526) (-3933.821) [-3928.547] (-3939.290) * (-3934.137) (-3943.972) (-3932.268) [-3932.057] -- 0:26:14
212000 -- [-3920.619] (-3936.666) (-3939.762) (-3942.425) * (-3950.287) [-3916.936] (-3928.477) (-3935.684) -- 0:26:12
213000 -- (-3919.869) (-3932.687) (-3935.312) [-3934.637] * (-3926.340) (-3929.992) (-3934.733) [-3924.067] -- 0:26:10
214000 -- (-3933.742) [-3927.091] (-3961.958) (-3922.550) * (-3938.979) (-3934.003) [-3920.026] (-3931.651) -- 0:26:08
215000 -- (-3925.292) (-3941.719) [-3927.211] (-3943.019) * (-3943.376) (-3946.027) [-3912.076] (-3922.792) -- 0:26:06
Average standard deviation of split frequencies: 0.011290
216000 -- [-3927.543] (-3935.068) (-3930.469) (-3935.427) * (-3947.932) (-3924.327) [-3913.361] (-3937.426) -- 0:26:04
217000 -- (-3926.092) (-3926.547) [-3917.062] (-3949.116) * [-3916.254] (-3921.475) (-3944.610) (-3925.891) -- 0:26:02
218000 -- (-3949.991) (-3934.982) (-3928.486) [-3932.539] * (-3936.638) (-3923.474) (-3941.724) [-3928.450] -- 0:26:00
219000 -- (-3934.321) [-3923.436] (-3928.536) (-3935.831) * (-3935.748) (-3945.569) (-3936.757) [-3924.680] -- 0:25:58
220000 -- (-3928.437) (-3935.419) [-3923.904] (-3932.785) * (-3933.053) (-3939.619) (-3941.379) [-3931.377] -- 0:25:56
Average standard deviation of split frequencies: 0.011955
221000 -- [-3911.522] (-3931.362) (-3952.202) (-3926.620) * (-3938.913) (-3934.286) [-3931.044] (-3924.571) -- 0:25:54
222000 -- [-3912.135] (-3942.557) (-3942.490) (-3938.279) * [-3934.834] (-3914.943) (-3934.831) (-3933.791) -- 0:25:52
223000 -- (-3918.385) [-3922.356] (-3934.966) (-3941.648) * (-3939.432) [-3934.022] (-3931.706) (-3930.095) -- 0:25:54
224000 -- [-3929.850] (-3932.498) (-3940.076) (-3959.326) * (-3921.570) (-3939.523) (-3945.677) [-3925.744] -- 0:25:48
225000 -- [-3919.584] (-3933.557) (-3922.771) (-3923.388) * (-3932.437) (-3945.604) (-3951.745) [-3923.993] -- 0:25:46
Average standard deviation of split frequencies: 0.011432
226000 -- [-3932.309] (-3952.820) (-3944.943) (-3934.492) * (-3923.231) (-3918.605) (-3945.588) [-3920.908] -- 0:25:44
227000 -- (-3927.390) (-3937.287) (-3955.469) [-3922.344] * (-3940.483) [-3921.393] (-3942.728) (-3924.169) -- 0:25:42
228000 -- [-3931.882] (-3933.175) (-3937.264) (-3929.417) * [-3916.844] (-3941.479) (-3935.207) (-3913.347) -- 0:25:40
229000 -- (-3935.555) (-3929.473) (-3928.851) [-3920.448] * (-3928.147) (-3934.011) (-3942.946) [-3920.820] -- 0:25:38
230000 -- [-3915.522] (-3936.191) (-3922.821) (-3923.657) * (-3951.678) (-3924.073) [-3921.187] (-3920.783) -- 0:25:40
Average standard deviation of split frequencies: 0.011201
231000 -- [-3923.416] (-3938.310) (-3934.379) (-3934.026) * (-3913.781) (-3923.588) [-3935.144] (-3932.247) -- 0:25:34
232000 -- (-3924.345) (-3940.274) [-3925.983] (-3927.668) * (-3944.284) (-3923.260) [-3920.022] (-3920.454) -- 0:25:32
233000 -- (-3940.615) [-3922.241] (-3927.807) (-3928.958) * [-3916.984] (-3956.002) (-3931.197) (-3922.260) -- 0:25:30
234000 -- (-3945.834) [-3922.736] (-3943.134) (-3921.230) * (-3924.042) (-3933.835) [-3923.800] (-3923.054) -- 0:25:28
235000 -- (-3933.590) [-3917.316] (-3923.551) (-3923.058) * (-3921.070) (-3921.517) (-3935.067) [-3917.787] -- 0:25:30
Average standard deviation of split frequencies: 0.012023
236000 -- (-3928.782) (-3934.962) (-3950.463) [-3931.041] * [-3927.837] (-3928.502) (-3929.731) (-3925.435) -- 0:25:28
237000 -- (-3938.676) (-3915.641) (-3939.938) [-3924.293] * (-3921.692) [-3936.157] (-3919.502) (-3925.989) -- 0:25:26
238000 -- (-3934.188) (-3941.059) [-3936.869] (-3935.860) * (-3931.358) (-3931.576) (-3948.609) [-3926.565] -- 0:25:24
239000 -- (-3936.711) (-3927.996) (-3923.906) [-3934.936] * (-3924.218) (-3932.560) (-3937.097) [-3942.941] -- 0:25:22
240000 -- (-3929.406) (-3944.195) [-3917.655] (-3925.522) * [-3923.522] (-3940.505) (-3930.236) (-3949.055) -- 0:25:20
Average standard deviation of split frequencies: 0.011138
241000 -- (-3942.082) (-3930.408) (-3915.575) [-3920.867] * [-3921.247] (-3926.228) (-3946.462) (-3943.836) -- 0:25:18
242000 -- (-3927.791) [-3922.270] (-3916.086) (-3943.293) * (-3913.490) (-3936.490) [-3920.151] (-3934.810) -- 0:25:16
243000 -- (-3944.299) [-3926.451] (-3933.419) (-3928.520) * (-3930.206) (-3929.522) [-3920.826] (-3927.816) -- 0:25:14
244000 -- (-3955.034) [-3917.857] (-3940.443) (-3927.629) * (-3929.137) (-3925.157) [-3923.716] (-3947.617) -- 0:25:12
245000 -- (-3926.222) (-3919.637) (-3946.358) [-3920.532] * (-3921.161) [-3932.753] (-3927.409) (-3957.447) -- 0:25:10
Average standard deviation of split frequencies: 0.010687
246000 -- (-3926.671) [-3929.197] (-3929.703) (-3930.856) * [-3933.843] (-3941.203) (-3928.200) (-3931.805) -- 0:25:08
247000 -- (-3932.712) (-3929.193) (-3939.240) [-3923.522] * [-3923.599] (-3939.794) (-3931.878) (-3923.152) -- 0:25:06
248000 -- (-3929.532) (-3918.825) [-3926.123] (-3922.942) * (-3947.493) (-3925.478) [-3923.169] (-3930.992) -- 0:25:04
249000 -- [-3915.888] (-3936.142) (-3934.958) (-3932.798) * (-3940.272) [-3925.325] (-3928.936) (-3947.667) -- 0:25:02
250000 -- [-3924.103] (-3929.423) (-3931.162) (-3921.025) * (-3930.438) (-3915.007) [-3926.492] (-3935.789) -- 0:25:00
Average standard deviation of split frequencies: 0.011139
251000 -- (-3929.930) (-3941.548) (-3942.941) [-3935.866] * [-3920.467] (-3939.703) (-3936.344) (-3945.755) -- 0:24:58
252000 -- (-3921.008) (-3949.573) (-3941.528) [-3913.150] * (-3923.068) [-3920.282] (-3925.456) (-3947.206) -- 0:24:56
253000 -- (-3933.605) (-3927.593) (-3932.120) [-3908.270] * (-3927.005) (-3944.970) [-3922.486] (-3931.137) -- 0:24:51
254000 -- (-3931.664) (-3929.496) (-3925.538) [-3909.773] * (-3930.931) (-3937.708) [-3927.690] (-3936.527) -- 0:24:52
255000 -- (-3928.701) (-3948.532) (-3932.460) [-3920.024] * (-3930.772) [-3939.753] (-3933.654) (-3924.900) -- 0:24:50
Average standard deviation of split frequencies: 0.011580
256000 -- (-3914.314) (-3943.575) (-3951.328) [-3926.429] * [-3932.920] (-3928.717) (-3948.351) (-3927.856) -- 0:24:48
257000 -- [-3919.883] (-3923.790) (-3932.633) (-3922.300) * (-3954.972) (-3917.143) (-3922.507) [-3923.207] -- 0:24:46
258000 -- (-3922.425) [-3917.684] (-3941.078) (-3934.844) * (-3926.681) (-3936.052) [-3926.456] (-3935.531) -- 0:24:44
259000 -- [-3936.639] (-3924.800) (-3946.237) (-3934.059) * (-3928.813) (-3927.851) (-3920.249) [-3927.724] -- 0:24:42
260000 -- [-3927.851] (-3923.941) (-3927.242) (-3938.165) * (-3938.238) [-3936.912] (-3927.289) (-3946.431) -- 0:24:40
Average standard deviation of split frequencies: 0.011790
261000 -- (-3934.007) [-3912.609] (-3936.544) (-3934.053) * (-3943.967) [-3929.994] (-3947.137) (-3935.107) -- 0:24:38
262000 -- (-3934.436) [-3936.594] (-3913.379) (-3937.369) * (-3938.877) (-3937.439) (-3950.561) [-3933.341] -- 0:24:36
263000 -- [-3924.993] (-3934.415) (-3923.767) (-3925.465) * [-3924.323] (-3931.198) (-3933.859) (-3937.548) -- 0:24:34
264000 -- (-3915.298) [-3939.788] (-3922.623) (-3927.208) * (-3935.123) [-3929.928] (-3934.313) (-3924.694) -- 0:24:32
265000 -- (-3936.487) [-3934.479] (-3927.458) (-3942.530) * (-3924.629) (-3927.014) (-3928.603) [-3934.988] -- 0:24:30
Average standard deviation of split frequencies: 0.011837
266000 -- (-3936.205) (-3918.669) (-3930.987) [-3926.099] * (-3925.359) [-3924.983] (-3931.795) (-3953.026) -- 0:24:28
267000 -- (-3941.607) [-3924.149] (-3942.006) (-3922.566) * (-3932.043) [-3913.742] (-3924.852) (-3941.193) -- 0:24:26
268000 -- (-3938.113) (-3921.674) (-3938.335) [-3924.648] * [-3921.550] (-3922.210) (-3945.738) (-3938.467) -- 0:24:24
269000 -- (-3923.211) (-3940.483) [-3923.183] (-3944.606) * (-3931.653) (-3936.004) [-3921.538] (-3933.711) -- 0:24:22
270000 -- [-3927.419] (-3944.381) (-3923.133) (-3912.723) * [-3922.378] (-3939.401) (-3926.712) (-3941.015) -- 0:24:20
Average standard deviation of split frequencies: 0.012422
271000 -- [-3930.701] (-3927.697) (-3935.485) (-3926.358) * [-3928.918] (-3931.259) (-3934.082) (-3917.663) -- 0:24:18
272000 -- [-3933.489] (-3914.565) (-3936.081) (-3927.323) * [-3922.535] (-3940.958) (-3938.138) (-3928.902) -- 0:24:16
273000 -- (-3924.929) [-3914.986] (-3935.829) (-3917.707) * (-3944.058) (-3935.597) [-3940.967] (-3928.745) -- 0:24:14
274000 -- (-3923.164) [-3918.057] (-3929.092) (-3929.872) * [-3923.795] (-3930.437) (-3937.131) (-3937.519) -- 0:24:12
275000 -- [-3923.832] (-3935.981) (-3932.290) (-3917.238) * (-3936.834) [-3922.146] (-3937.513) (-3928.841) -- 0:24:10
Average standard deviation of split frequencies: 0.012120
276000 -- (-3918.410) [-3942.247] (-3932.362) (-3927.839) * (-3940.906) [-3931.274] (-3934.688) (-3947.333) -- 0:24:08
277000 -- [-3913.662] (-3917.792) (-3933.144) (-3942.003) * (-3920.729) [-3916.204] (-3929.995) (-3933.927) -- 0:24:06
278000 -- (-3921.272) [-3922.733] (-3941.565) (-3941.213) * (-3937.476) (-3925.983) [-3920.800] (-3921.316) -- 0:24:04
279000 -- [-3923.928] (-3926.001) (-3936.821) (-3942.340) * (-3934.594) (-3938.759) [-3925.876] (-3933.165) -- 0:24:02
280000 -- (-3936.898) (-3931.627) (-3939.990) [-3918.101] * (-3919.438) (-3934.771) (-3933.090) [-3926.942] -- 0:24:00
Average standard deviation of split frequencies: 0.010724
281000 -- (-3950.684) (-3938.959) (-3931.973) [-3924.649] * [-3917.681] (-3927.981) (-3921.989) (-3926.054) -- 0:23:58
282000 -- (-3929.359) [-3929.696] (-3931.208) (-3962.232) * (-3938.417) (-3926.397) [-3923.427] (-3949.498) -- 0:23:56
283000 -- (-3919.992) (-3932.892) [-3930.922] (-3928.131) * (-3931.392) (-3935.232) [-3917.812] (-3929.195) -- 0:23:54
284000 -- (-3926.509) [-3922.222] (-3929.287) (-3932.144) * (-3946.378) (-3939.691) (-3938.179) [-3936.535] -- 0:23:52
285000 -- (-3932.991) (-3933.737) [-3924.515] (-3950.181) * [-3922.398] (-3943.473) (-3943.395) (-3944.156) -- 0:23:50
Average standard deviation of split frequencies: 0.010333
286000 -- (-3942.067) [-3929.631] (-3933.853) (-3928.841) * (-3928.946) (-3939.115) [-3931.556] (-3920.735) -- 0:23:48
287000 -- (-3933.286) [-3910.268] (-3936.296) (-3922.983) * (-3922.502) [-3919.843] (-3936.875) (-3939.562) -- 0:23:46
288000 -- (-3943.509) [-3919.415] (-3940.364) (-3924.698) * (-3942.290) [-3935.080] (-3935.086) (-3930.302) -- 0:23:44
289000 -- (-3930.855) (-3923.091) (-3940.051) [-3925.879] * [-3931.225] (-3934.184) (-3939.701) (-3944.443) -- 0:23:42
290000 -- (-3929.000) (-3928.678) (-3943.538) [-3917.446] * (-3945.279) [-3932.079] (-3949.654) (-3931.783) -- 0:23:40
Average standard deviation of split frequencies: 0.010542
291000 -- [-3921.768] (-3929.613) (-3948.532) (-3932.840) * (-3931.586) (-3929.858) [-3925.899] (-3927.169) -- 0:23:38
292000 -- (-3932.717) (-3948.305) (-3928.487) [-3918.515] * [-3927.099] (-3920.534) (-3932.594) (-3931.539) -- 0:23:36
293000 -- [-3925.824] (-3936.126) (-3929.914) (-3933.002) * (-3927.742) [-3915.452] (-3937.033) (-3922.036) -- 0:23:34
294000 -- [-3935.254] (-3934.683) (-3941.343) (-3939.448) * [-3924.519] (-3928.080) (-3928.909) (-3940.832) -- 0:23:32
295000 -- [-3914.962] (-3925.174) (-3934.982) (-3929.723) * (-3944.714) (-3926.264) (-3931.646) [-3921.469] -- 0:23:30
Average standard deviation of split frequencies: 0.010842
296000 -- [-3921.037] (-3917.586) (-3934.653) (-3927.041) * (-3926.784) (-3916.081) [-3927.067] (-3942.270) -- 0:23:28
297000 -- (-3932.333) (-3931.355) [-3934.617] (-3939.679) * (-3923.624) (-3925.613) (-3932.948) [-3924.309] -- 0:23:26
298000 -- (-3940.110) (-3932.986) [-3916.282] (-3931.144) * (-3945.777) (-3937.840) (-3930.004) [-3920.016] -- 0:23:24
299000 -- (-3924.044) (-3929.215) (-3942.170) [-3935.674] * (-3935.712) [-3928.480] (-3924.573) (-3917.512) -- 0:23:22
300000 -- (-3926.509) [-3922.954] (-3931.277) (-3959.440) * (-3947.466) [-3908.908] (-3935.355) (-3928.313) -- 0:23:20
Average standard deviation of split frequencies: 0.011216
301000 -- (-3920.044) [-3915.797] (-3935.239) (-3937.606) * (-3933.759) (-3935.602) (-3938.655) [-3929.360] -- 0:23:18
302000 -- (-3925.839) [-3916.942] (-3935.928) (-3928.508) * (-3946.398) (-3917.180) [-3919.739] (-3932.533) -- 0:23:16
303000 -- (-3915.172) (-3934.466) (-3933.787) [-3922.085] * (-3925.002) (-3934.585) (-3923.626) [-3926.356] -- 0:23:14
304000 -- (-3924.076) (-3925.464) (-3939.114) [-3919.000] * [-3910.562] (-3925.599) (-3924.824) (-3931.990) -- 0:23:12
305000 -- (-3931.779) (-3917.032) (-3930.466) [-3919.927] * [-3922.391] (-3913.515) (-3929.541) (-3919.376) -- 0:23:10
Average standard deviation of split frequencies: 0.011139
306000 -- (-3924.607) (-3944.903) [-3927.933] (-3926.525) * [-3910.418] (-3925.490) (-3927.696) (-3935.550) -- 0:23:08
307000 -- (-3925.088) (-3943.484) (-3931.337) [-3918.331] * (-3924.865) (-3928.898) [-3923.019] (-3932.112) -- 0:23:06
308000 -- (-3939.017) [-3931.250] (-3930.674) (-3948.578) * (-3933.528) [-3921.890] (-3941.264) (-3931.590) -- 0:23:04
309000 -- (-3928.793) [-3930.451] (-3933.714) (-3953.001) * (-3932.477) [-3923.732] (-3942.580) (-3940.123) -- 0:23:02
310000 -- (-3919.563) (-3934.703) [-3924.269] (-3939.987) * (-3938.287) (-3932.628) [-3926.114] (-3953.517) -- 0:23:00
Average standard deviation of split frequencies: 0.011187
311000 -- (-3929.920) [-3923.490] (-3925.954) (-3931.530) * (-3923.413) (-3930.880) [-3917.044] (-3926.321) -- 0:22:58
312000 -- [-3917.695] (-3929.797) (-3928.088) (-3931.823) * (-3958.919) (-3953.750) [-3924.895] (-3923.455) -- 0:22:56
313000 -- [-3917.279] (-3931.937) (-3924.253) (-3931.678) * (-3937.576) (-3923.520) [-3922.624] (-3921.076) -- 0:22:54
314000 -- (-3951.665) (-3918.757) (-3928.076) [-3916.267] * (-3940.570) (-3932.773) [-3920.226] (-3949.192) -- 0:22:52
315000 -- (-3940.308) [-3919.162] (-3938.914) (-3918.229) * (-3946.460) (-3919.111) [-3919.644] (-3941.544) -- 0:22:50
Average standard deviation of split frequencies: 0.011086
316000 -- (-3922.185) [-3921.726] (-3942.681) (-3935.770) * (-3931.374) (-3932.585) (-3929.674) [-3924.972] -- 0:22:48
317000 -- (-3938.615) [-3918.515] (-3931.580) (-3937.539) * (-3926.341) (-3923.975) (-3937.095) [-3935.369] -- 0:22:46
318000 -- (-3918.607) [-3923.610] (-3940.550) (-3923.194) * (-3939.139) (-3924.806) (-3925.805) [-3915.249] -- 0:22:44
319000 -- (-3922.243) (-3929.174) [-3923.526] (-3940.326) * (-3936.613) (-3939.560) [-3921.436] (-3921.215) -- 0:22:42
320000 -- [-3923.257] (-3935.063) (-3927.817) (-3927.602) * (-3929.384) (-3939.524) (-3930.834) [-3919.154] -- 0:22:40
Average standard deviation of split frequencies: 0.011069
321000 -- [-3929.317] (-3949.387) (-3928.710) (-3940.342) * [-3918.895] (-3942.140) (-3920.062) (-3944.755) -- 0:22:38
322000 -- [-3925.979] (-3939.540) (-3928.592) (-3923.381) * (-3938.556) (-3927.423) [-3922.931] (-3923.075) -- 0:22:36
323000 -- (-3939.757) [-3930.747] (-3917.596) (-3947.395) * (-3945.883) [-3921.156] (-3930.144) (-3925.785) -- 0:22:34
324000 -- (-3939.318) [-3917.613] (-3933.586) (-3932.815) * [-3921.761] (-3930.412) (-3934.260) (-3929.348) -- 0:22:32
325000 -- (-3940.280) [-3922.812] (-3928.136) (-3931.442) * (-3937.628) (-3922.563) [-3918.483] (-3940.312) -- 0:22:30
Average standard deviation of split frequencies: 0.010207
326000 -- (-3932.324) [-3935.730] (-3928.338) (-3939.965) * (-3938.080) (-3937.581) (-3915.799) [-3924.235] -- 0:22:28
327000 -- [-3913.242] (-3927.116) (-3937.296) (-3922.227) * (-3936.468) (-3932.191) (-3915.892) [-3922.588] -- 0:22:26
328000 -- (-3931.863) (-3940.838) (-3921.241) [-3931.195] * (-3935.324) [-3930.874] (-3936.648) (-3930.547) -- 0:22:24
329000 -- (-3954.171) (-3932.876) (-3917.438) [-3926.868] * (-3929.239) (-3936.785) [-3928.386] (-3925.741) -- 0:22:22
330000 -- (-3939.917) [-3932.981] (-3921.485) (-3924.496) * (-3935.191) (-3941.479) [-3919.103] (-3940.537) -- 0:22:20
Average standard deviation of split frequencies: 0.010966
331000 -- (-3936.637) [-3922.207] (-3926.581) (-3949.415) * [-3927.493] (-3950.517) (-3931.818) (-3950.770) -- 0:22:18
332000 -- (-3924.225) (-3924.021) [-3919.976] (-3925.073) * [-3920.053] (-3937.085) (-3919.389) (-3922.246) -- 0:22:16
333000 -- (-3933.647) (-3936.852) [-3925.566] (-3923.032) * (-3947.960) [-3930.692] (-3930.124) (-3915.539) -- 0:22:14
334000 -- [-3917.185] (-3930.070) (-3921.903) (-3933.816) * (-3933.372) (-3937.157) (-3926.475) [-3933.231] -- 0:22:12
335000 -- (-3919.915) (-3949.621) (-3939.911) [-3923.413] * (-3924.388) (-3918.599) (-3933.239) [-3907.558] -- 0:22:10
Average standard deviation of split frequencies: 0.011224
336000 -- (-3925.848) [-3923.247] (-3929.749) (-3930.212) * [-3926.965] (-3946.297) (-3924.633) (-3932.164) -- 0:22:08
337000 -- (-3938.810) (-3950.983) [-3930.477] (-3926.435) * (-3926.938) (-3945.993) (-3932.085) [-3944.028] -- 0:22:06
338000 -- (-3942.002) (-3915.050) [-3919.228] (-3935.365) * [-3920.426] (-3929.589) (-3924.448) (-3934.342) -- 0:22:04
339000 -- (-3932.785) (-3921.910) (-3934.302) [-3931.256] * [-3913.992] (-3924.577) (-3924.605) (-3943.101) -- 0:22:02
340000 -- (-3929.319) [-3929.429] (-3921.150) (-3931.310) * (-3916.646) (-3926.452) [-3923.726] (-3931.223) -- 0:22:00
Average standard deviation of split frequencies: 0.010698
341000 -- [-3917.608] (-3937.612) (-3937.129) (-3933.448) * (-3925.262) (-3932.073) (-3932.963) [-3919.022] -- 0:21:58
342000 -- [-3926.382] (-3927.213) (-3923.897) (-3939.192) * (-3926.212) (-3944.507) [-3928.826] (-3933.702) -- 0:21:56
343000 -- (-3930.324) [-3914.891] (-3929.747) (-3935.464) * (-3941.213) (-3918.781) [-3924.022] (-3935.894) -- 0:21:54
344000 -- [-3925.155] (-3924.424) (-3933.982) (-3932.458) * (-3948.170) (-3931.060) [-3917.535] (-3919.480) -- 0:21:52
345000 -- (-3926.547) (-3918.529) (-3933.706) [-3914.069] * [-3930.784] (-3929.627) (-3927.310) (-3940.991) -- 0:21:50
Average standard deviation of split frequencies: 0.011105
346000 -- (-3924.610) (-3924.693) (-3937.792) [-3931.722] * (-3931.482) [-3923.002] (-3934.012) (-3938.086) -- 0:21:48
347000 -- (-3928.703) [-3925.936] (-3941.142) (-3917.753) * (-3946.552) (-3945.331) (-3924.317) [-3920.788] -- 0:21:46
348000 -- (-3924.752) (-3922.596) [-3922.603] (-3924.270) * (-3944.199) (-3931.269) [-3934.101] (-3932.339) -- 0:21:44
349000 -- [-3921.358] (-3932.814) (-3936.465) (-3931.772) * [-3933.734] (-3936.918) (-3943.521) (-3943.486) -- 0:21:42
350000 -- (-3932.745) (-3933.116) (-3931.782) [-3950.797] * (-3929.557) (-3938.865) (-3959.466) [-3925.043] -- 0:21:40
Average standard deviation of split frequencies: 0.010577
351000 -- (-3941.694) (-3931.768) [-3917.025] (-3937.081) * [-3917.197] (-3927.717) (-3940.286) (-3924.761) -- 0:21:38
352000 -- (-3934.648) [-3935.450] (-3924.934) (-3941.698) * [-3922.318] (-3945.772) (-3926.874) (-3936.984) -- 0:21:36
353000 -- (-3933.250) [-3924.091] (-3939.064) (-3934.495) * [-3928.106] (-3947.669) (-3935.460) (-3926.993) -- 0:21:34
354000 -- [-3927.185] (-3922.339) (-3923.037) (-3927.781) * (-3924.106) (-3934.929) [-3930.254] (-3941.736) -- 0:21:32
355000 -- (-3924.693) (-3924.613) (-3940.708) [-3928.761] * [-3925.268] (-3934.877) (-3930.897) (-3953.336) -- 0:21:30
Average standard deviation of split frequencies: 0.010542
356000 -- (-3930.109) [-3924.651] (-3934.947) (-3928.013) * (-3925.418) (-3936.897) [-3925.554] (-3948.768) -- 0:21:28
357000 -- [-3927.314] (-3926.444) (-3913.268) (-3930.157) * (-3934.665) [-3926.070] (-3935.847) (-3924.399) -- 0:21:26
358000 -- [-3925.747] (-3940.823) (-3920.939) (-3941.058) * (-3937.893) (-3926.227) (-3922.592) [-3929.870] -- 0:21:24
359000 -- (-3925.077) [-3922.714] (-3933.437) (-3930.846) * (-3931.470) (-3937.269) (-3929.600) [-3931.583] -- 0:21:22
360000 -- (-3915.150) [-3922.206] (-3935.284) (-3918.932) * (-3929.226) [-3915.927] (-3938.836) (-3938.519) -- 0:21:20
Average standard deviation of split frequencies: 0.010406
361000 -- (-3927.129) (-3938.688) (-3931.373) [-3924.037] * [-3924.595] (-3920.322) (-3938.977) (-3941.636) -- 0:21:18
362000 -- [-3917.624] (-3942.439) (-3939.240) (-3940.247) * (-3932.901) [-3912.659] (-3930.315) (-3950.996) -- 0:21:16
363000 -- (-3915.095) (-3922.710) [-3919.926] (-3929.517) * (-3925.891) [-3918.308] (-3927.203) (-3936.471) -- 0:21:14
364000 -- (-3926.012) (-3926.509) (-3924.475) [-3912.477] * (-3926.342) [-3920.040] (-3948.081) (-3931.283) -- 0:21:12
365000 -- (-3930.472) [-3935.050] (-3924.486) (-3920.680) * [-3930.712] (-3914.369) (-3961.258) (-3941.839) -- 0:21:10
Average standard deviation of split frequencies: 0.010790
366000 -- (-3924.483) (-3933.520) [-3926.328] (-3937.109) * [-3921.174] (-3914.978) (-3930.897) (-3926.443) -- 0:21:08
367000 -- (-3928.559) [-3926.867] (-3932.981) (-3938.321) * [-3921.269] (-3933.042) (-3943.951) (-3924.333) -- 0:21:06
368000 -- (-3930.085) (-3938.838) [-3928.422] (-3927.834) * (-3928.018) [-3923.359] (-3932.708) (-3927.913) -- 0:21:04
369000 -- (-3930.861) [-3922.730] (-3942.558) (-3931.766) * (-3930.990) [-3924.751] (-3932.263) (-3927.169) -- 0:21:02
370000 -- (-3947.942) [-3923.841] (-3938.689) (-3924.005) * (-3932.990) (-3941.645) (-3927.865) [-3920.353] -- 0:21:00
Average standard deviation of split frequencies: 0.010726
371000 -- (-3943.874) (-3932.285) (-3936.525) [-3918.239] * (-3933.378) [-3928.787] (-3930.899) (-3928.933) -- 0:20:58
372000 -- [-3927.472] (-3948.517) (-3952.682) (-3938.248) * (-3923.305) (-3927.730) [-3912.919] (-3934.938) -- 0:20:56
373000 -- (-3930.985) (-3937.034) (-3925.050) [-3917.244] * (-3930.426) [-3927.108] (-3936.833) (-3926.610) -- 0:20:54
374000 -- (-3944.280) (-3930.908) (-3945.787) [-3927.598] * (-3928.019) (-3923.373) [-3937.412] (-3936.974) -- 0:20:52
375000 -- (-3927.924) (-3919.519) (-3934.398) [-3922.648] * (-3933.330) [-3924.215] (-3933.636) (-3930.082) -- 0:20:50
Average standard deviation of split frequencies: 0.010645
376000 -- (-3923.110) [-3930.011] (-3940.064) (-3944.946) * [-3930.840] (-3939.573) (-3931.839) (-3921.067) -- 0:20:48
377000 -- [-3946.747] (-3937.355) (-3937.977) (-3936.958) * (-3947.010) (-3924.171) [-3931.575] (-3937.896) -- 0:20:46
378000 -- (-3941.017) [-3911.514] (-3930.481) (-3925.395) * (-3930.114) (-3923.906) [-3929.683] (-3938.852) -- 0:20:44
379000 -- (-3944.326) (-3925.849) [-3916.739] (-3922.894) * (-3944.357) [-3936.297] (-3924.134) (-3930.763) -- 0:20:42
380000 -- [-3926.393] (-3943.090) (-3931.428) (-3933.012) * (-3922.165) [-3917.701] (-3922.230) (-3958.655) -- 0:20:40
Average standard deviation of split frequencies: 0.009955
381000 -- (-3920.898) (-3926.963) [-3923.217] (-3939.030) * (-3933.990) (-3928.523) [-3919.512] (-3938.683) -- 0:20:38
382000 -- (-3923.121) [-3931.233] (-3923.713) (-3937.818) * (-3941.374) (-3919.518) [-3919.617] (-3948.479) -- 0:20:36
383000 -- (-3935.634) (-3952.732) [-3920.849] (-3932.834) * (-3938.939) (-3923.686) (-3942.702) [-3921.733] -- 0:20:34
384000 -- (-3955.088) (-3945.162) [-3917.232] (-3921.558) * (-3945.106) (-3930.099) (-3922.151) [-3931.210] -- 0:20:32
385000 -- (-3941.927) (-3925.789) [-3927.416] (-3916.991) * (-3919.853) (-3927.884) (-3946.011) [-3935.954] -- 0:20:30
Average standard deviation of split frequencies: 0.010099
386000 -- (-3949.195) (-3936.532) [-3938.076] (-3936.356) * [-3914.489] (-3919.295) (-3927.704) (-3934.914) -- 0:20:28
387000 -- (-3935.824) (-3950.452) [-3924.880] (-3929.370) * (-3937.539) (-3930.182) [-3913.526] (-3938.211) -- 0:20:26
388000 -- (-3931.420) (-3930.739) (-3927.205) [-3928.937] * [-3925.827] (-3937.606) (-3925.794) (-3936.828) -- 0:20:24
389000 -- (-3935.685) (-3931.746) (-3933.658) [-3920.559] * [-3928.628] (-3931.861) (-3929.665) (-3940.527) -- 0:20:22
390000 -- (-3933.028) [-3924.751] (-3927.281) (-3931.907) * [-3929.168] (-3932.598) (-3942.180) (-3923.827) -- 0:20:20
Average standard deviation of split frequencies: 0.009746
391000 -- (-3932.542) (-3943.582) [-3928.281] (-3938.807) * [-3926.811] (-3944.570) (-3926.403) (-3935.209) -- 0:20:18
392000 -- (-3933.273) (-3937.059) [-3916.656] (-3933.257) * (-3937.797) (-3936.682) (-3933.626) [-3930.567] -- 0:20:16
393000 -- (-3927.119) (-3930.540) [-3936.297] (-3932.773) * (-3929.689) (-3932.656) (-3932.936) [-3917.707] -- 0:20:14
394000 -- [-3922.596] (-3932.093) (-3928.830) (-3916.094) * [-3926.544] (-3943.132) (-3930.203) (-3928.816) -- 0:20:12
395000 -- (-3919.762) [-3917.754] (-3922.720) (-3920.019) * (-3930.455) (-3946.932) [-3925.705] (-3918.756) -- 0:20:10
Average standard deviation of split frequencies: 0.009752
396000 -- (-3950.021) (-3937.735) [-3921.028] (-3936.206) * (-3935.819) (-3936.991) (-3933.549) [-3925.533] -- 0:20:08
397000 -- (-3936.769) [-3924.647] (-3928.150) (-3945.340) * (-3937.407) (-3938.026) [-3917.494] (-3925.213) -- 0:20:06
398000 -- (-3924.591) [-3924.700] (-3937.852) (-3947.747) * (-3944.558) (-3929.614) (-3932.442) [-3921.118] -- 0:20:04
399000 -- [-3928.239] (-3935.370) (-3947.459) (-3944.010) * [-3928.927] (-3956.013) (-3935.166) (-3942.634) -- 0:20:02
400000 -- (-3926.992) [-3927.768] (-3928.603) (-3944.421) * (-3927.382) (-3957.052) [-3929.106] (-3939.673) -- 0:20:00
Average standard deviation of split frequencies: 0.009729
401000 -- (-3941.435) (-3932.182) (-3930.016) [-3924.546] * (-3929.585) (-3967.286) (-3935.396) [-3924.378] -- 0:19:58
402000 -- (-3938.718) (-3933.382) (-3923.968) [-3923.830] * [-3918.021] (-3931.515) (-3939.679) (-3938.563) -- 0:19:56
403000 -- (-3939.463) [-3932.969] (-3939.508) (-3933.419) * [-3927.523] (-3942.277) (-3947.006) (-3935.500) -- 0:19:54
404000 -- [-3929.390] (-3932.625) (-3919.417) (-3929.339) * (-3920.297) (-3926.629) (-3921.468) [-3921.329] -- 0:19:52
405000 -- (-3940.806) (-3920.663) (-3940.008) [-3922.342] * (-3931.781) (-3938.273) [-3920.039] (-3926.974) -- 0:19:50
Average standard deviation of split frequencies: 0.009713
406000 -- (-3924.796) [-3922.827] (-3957.942) (-3939.141) * (-3925.975) (-3930.016) (-3926.919) [-3929.433] -- 0:19:48
407000 -- [-3932.250] (-3923.080) (-3939.403) (-3921.575) * (-3922.874) (-3927.166) [-3923.377] (-3927.225) -- 0:19:46
408000 -- (-3923.950) (-3939.962) [-3923.178] (-3947.332) * (-3931.842) [-3911.480] (-3947.923) (-3939.926) -- 0:19:44
409000 -- (-3917.695) (-3951.069) [-3917.301] (-3941.451) * (-3948.851) (-3926.806) (-3958.411) [-3924.394] -- 0:19:42
410000 -- (-3938.081) (-3930.850) (-3929.603) [-3933.579] * (-3933.427) [-3927.510] (-3930.336) (-3927.920) -- 0:19:40
Average standard deviation of split frequencies: 0.009845
411000 -- [-3923.353] (-3929.681) (-3935.898) (-3933.828) * (-3916.141) [-3914.458] (-3937.652) (-3925.915) -- 0:19:38
412000 -- (-3924.214) (-3920.038) (-3936.077) [-3916.073] * [-3926.292] (-3926.409) (-3927.731) (-3943.674) -- 0:19:36
413000 -- (-3926.437) (-3924.157) (-3943.437) [-3914.639] * (-3939.344) (-3920.459) [-3922.041] (-3941.562) -- 0:19:34
414000 -- (-3944.837) (-3921.459) (-3934.584) [-3918.283] * (-3947.185) (-3934.154) [-3920.103] (-3941.202) -- 0:19:32
415000 -- (-3919.495) (-3953.110) [-3923.847] (-3924.795) * (-3931.123) [-3924.797] (-3927.754) (-3939.059) -- 0:19:30
Average standard deviation of split frequencies: 0.009567
416000 -- (-3933.920) (-3932.141) [-3929.295] (-3928.832) * (-3939.969) (-3940.501) [-3928.330] (-3964.296) -- 0:19:28
417000 -- [-3923.557] (-3934.230) (-3925.611) (-3921.758) * [-3919.832] (-3956.788) (-3942.091) (-3939.143) -- 0:19:26
418000 -- [-3929.436] (-3926.343) (-3967.242) (-3931.009) * [-3926.507] (-3945.439) (-3934.292) (-3922.517) -- 0:19:24
419000 -- [-3925.468] (-3933.459) (-3942.449) (-3937.754) * (-3930.640) (-3938.013) (-3941.418) [-3929.004] -- 0:19:22
420000 -- [-3913.742] (-3945.721) (-3942.508) (-3936.981) * (-3927.235) (-3947.238) [-3930.641] (-3933.961) -- 0:19:20
Average standard deviation of split frequencies: 0.009611
421000 -- (-3922.854) [-3927.178] (-3925.628) (-3934.370) * [-3925.155] (-3944.628) (-3918.711) (-3945.034) -- 0:19:18
422000 -- (-3937.803) [-3934.932] (-3934.137) (-3929.669) * [-3912.625] (-3937.033) (-3922.066) (-3946.908) -- 0:19:16
423000 -- (-3945.707) (-3934.646) [-3921.618] (-3932.228) * (-3929.526) (-3934.478) [-3928.380] (-3943.177) -- 0:19:14
424000 -- (-3927.487) (-3941.031) [-3920.007] (-3933.935) * (-3932.290) (-3931.639) (-3939.056) [-3932.235] -- 0:19:12
425000 -- (-3931.589) [-3931.619] (-3930.092) (-3942.335) * (-3929.816) (-3943.742) [-3932.905] (-3943.481) -- 0:19:10
Average standard deviation of split frequencies: 0.009661
426000 -- (-3938.913) (-3937.229) (-3921.452) [-3915.455] * [-3919.174] (-3936.471) (-3945.017) (-3947.272) -- 0:19:08
427000 -- (-3928.905) (-3936.607) (-3942.765) [-3918.404] * [-3919.281] (-3944.464) (-3937.430) (-3951.400) -- 0:19:06
428000 -- (-3938.646) [-3919.283] (-3926.963) (-3930.868) * (-3929.944) [-3929.114] (-3949.420) (-3937.106) -- 0:19:04
429000 -- (-3951.460) (-3934.107) (-3926.172) [-3931.205] * [-3923.591] (-3942.334) (-3929.607) (-3929.421) -- 0:19:02
430000 -- (-3932.180) (-3930.423) (-3932.047) [-3922.069] * (-3921.798) (-3932.509) (-3946.881) [-3916.026] -- 0:19:00
Average standard deviation of split frequencies: 0.009914
431000 -- (-3940.940) (-3934.671) (-3925.310) [-3933.352] * (-3930.389) [-3922.355] (-3934.413) (-3932.564) -- 0:18:58
432000 -- (-3923.301) (-3951.927) (-3919.547) [-3911.732] * (-3925.331) (-3930.666) [-3922.615] (-3934.493) -- 0:18:56
433000 -- [-3921.439] (-3948.244) (-3938.397) (-3942.505) * [-3926.885] (-3930.894) (-3938.148) (-3916.086) -- 0:18:54
434000 -- [-3910.081] (-3918.216) (-3928.870) (-3940.818) * (-3949.244) [-3919.262] (-3950.797) (-3924.415) -- 0:18:52
435000 -- (-3937.755) (-3932.024) [-3925.302] (-3939.731) * (-3917.431) (-3935.276) (-3926.332) [-3918.207] -- 0:18:50
Average standard deviation of split frequencies: 0.010126
436000 -- (-3940.902) [-3932.925] (-3936.803) (-3926.089) * (-3945.463) [-3926.927] (-3934.198) (-3923.859) -- 0:18:49
437000 -- (-3932.093) (-3942.017) [-3930.632] (-3935.832) * (-3948.889) (-3918.552) [-3928.577] (-3934.991) -- 0:18:47
438000 -- (-3930.714) [-3926.131] (-3937.168) (-3955.567) * (-3934.732) (-3919.013) [-3915.994] (-3938.127) -- 0:18:45
439000 -- (-3914.010) [-3929.806] (-3940.201) (-3937.670) * [-3929.399] (-3934.071) (-3923.835) (-3935.019) -- 0:18:43
440000 -- [-3920.732] (-3928.446) (-3937.422) (-3939.062) * (-3921.826) [-3925.477] (-3927.367) (-3943.872) -- 0:18:41
Average standard deviation of split frequencies: 0.010327
441000 -- (-3931.631) [-3909.990] (-3935.622) (-3931.730) * (-3940.025) (-3932.654) (-3918.975) [-3925.525] -- 0:18:39
442000 -- (-3922.359) (-3926.217) [-3915.985] (-3942.878) * [-3921.096] (-3931.288) (-3927.038) (-3933.007) -- 0:18:37
443000 -- (-3936.524) [-3920.639] (-3924.784) (-3942.535) * [-3923.856] (-3925.722) (-3930.381) (-3931.512) -- 0:18:35
444000 -- (-3945.605) [-3920.080] (-3924.269) (-3934.537) * (-3933.865) (-3937.750) (-3936.539) [-3923.719] -- 0:18:33
445000 -- (-3943.558) [-3918.142] (-3926.337) (-3932.189) * (-3948.711) [-3921.691] (-3939.992) (-3932.694) -- 0:18:31
Average standard deviation of split frequencies: 0.010326
446000 -- (-3941.256) [-3933.870] (-3948.669) (-3941.599) * (-3925.961) [-3916.385] (-3924.845) (-3941.219) -- 0:18:29
447000 -- (-3945.812) (-3927.047) [-3919.522] (-3941.007) * (-3957.070) [-3916.303] (-3943.944) (-3926.854) -- 0:18:27
448000 -- (-3930.151) (-3914.976) (-3921.868) [-3921.230] * (-3929.456) (-3944.378) (-3935.792) [-3921.103] -- 0:18:25
449000 -- (-3934.651) [-3933.962] (-3938.319) (-3924.641) * (-3935.269) (-3942.727) (-3934.411) [-3912.694] -- 0:18:23
450000 -- (-3930.140) (-3957.505) [-3930.322] (-3937.800) * (-3929.629) (-3937.492) [-3926.813] (-3934.100) -- 0:18:21
Average standard deviation of split frequencies: 0.010098
451000 -- [-3916.093] (-3940.490) (-3942.670) (-3932.607) * (-3937.837) (-3948.093) [-3930.471] (-3926.136) -- 0:18:19
452000 -- (-3923.029) (-3938.250) (-3941.845) [-3929.768] * (-3942.446) (-3942.389) (-3924.260) [-3922.700] -- 0:18:17
453000 -- [-3923.653] (-3939.940) (-3952.914) (-3933.835) * (-3924.997) (-3925.882) (-3928.274) [-3921.030] -- 0:18:15
454000 -- (-3934.646) (-3935.474) (-3945.114) [-3922.828] * (-3944.453) (-3935.229) [-3928.546] (-3921.452) -- 0:18:13
455000 -- (-3930.720) [-3923.125] (-3933.132) (-3936.010) * (-3943.832) (-3944.480) (-3928.898) [-3928.603] -- 0:18:11
Average standard deviation of split frequencies: 0.010399
456000 -- (-3926.039) (-3937.302) [-3933.085] (-3936.028) * (-3945.200) (-3925.620) (-3934.959) [-3926.273] -- 0:18:09
457000 -- (-3925.842) (-3945.678) (-3942.486) [-3925.370] * (-3939.717) (-3933.063) (-3923.321) [-3914.497] -- 0:18:07
458000 -- (-3932.864) [-3912.372] (-3919.604) (-3932.303) * (-3926.746) (-3938.457) [-3922.088] (-3936.025) -- 0:18:05
459000 -- (-3929.885) (-3928.064) [-3920.474] (-3936.127) * (-3947.082) (-3934.774) (-3934.440) [-3925.383] -- 0:18:03
460000 -- (-3934.701) (-3944.811) [-3936.665] (-3936.197) * [-3922.274] (-3943.683) (-3927.110) (-3931.450) -- 0:18:01
Average standard deviation of split frequencies: 0.010434
461000 -- (-3916.424) (-3925.763) [-3932.631] (-3943.554) * (-3928.848) [-3930.460] (-3925.360) (-3930.331) -- 0:17:59
462000 -- (-3933.900) (-3953.704) (-3950.121) [-3925.942] * (-3945.127) [-3932.566] (-3947.215) (-3936.791) -- 0:17:57
463000 -- (-3929.519) (-3930.180) (-3945.712) [-3926.785] * (-3954.581) (-3926.632) [-3926.557] (-3923.373) -- 0:17:55
464000 -- [-3912.096] (-3933.625) (-3939.834) (-3943.338) * (-3938.779) (-3942.778) [-3937.925] (-3930.651) -- 0:17:53
465000 -- (-3926.778) (-3953.160) [-3934.923] (-3940.445) * (-3930.695) [-3920.750] (-3946.947) (-3924.275) -- 0:17:51
Average standard deviation of split frequencies: 0.010790
466000 -- [-3917.001] (-3931.683) (-3927.806) (-3937.883) * [-3920.682] (-3936.154) (-3935.829) (-3945.037) -- 0:17:49
467000 -- (-3925.054) (-3924.335) [-3930.374] (-3926.835) * (-3914.480) [-3922.126] (-3935.767) (-3955.615) -- 0:17:47
468000 -- (-3925.526) [-3913.434] (-3935.978) (-3940.734) * [-3922.259] (-3925.495) (-3945.110) (-3936.023) -- 0:17:45
469000 -- (-3930.418) [-3924.809] (-3925.758) (-3938.050) * (-3930.701) (-3940.157) (-3925.443) [-3931.513] -- 0:17:43
470000 -- [-3916.423] (-3924.197) (-3936.810) (-3927.524) * (-3934.805) [-3919.289] (-3937.227) (-3936.151) -- 0:17:41
Average standard deviation of split frequencies: 0.009878
471000 -- (-3927.316) (-3927.531) [-3927.247] (-3927.936) * (-3928.058) [-3922.803] (-3931.124) (-3937.825) -- 0:17:39
472000 -- (-3931.795) (-3924.109) [-3915.541] (-3940.254) * (-3929.806) (-3946.132) [-3919.890] (-3922.900) -- 0:17:37
473000 -- (-3928.342) (-3933.583) [-3933.163] (-3921.711) * [-3922.994] (-3938.173) (-3924.649) (-3939.546) -- 0:17:35
474000 -- (-3929.618) (-3923.488) (-3928.182) [-3924.685] * (-3919.137) (-3933.605) [-3913.142] (-3950.382) -- 0:17:33
475000 -- (-3922.569) (-3929.654) (-3941.015) [-3927.300] * [-3920.331] (-3936.180) (-3929.308) (-3949.376) -- 0:17:31
Average standard deviation of split frequencies: 0.009632
476000 -- (-3942.276) (-3943.544) [-3925.394] (-3935.760) * [-3921.736] (-3924.841) (-3933.197) (-3930.392) -- 0:17:29
477000 -- (-3923.480) (-3946.194) [-3915.190] (-3930.751) * (-3911.558) (-3942.730) [-3928.187] (-3930.074) -- 0:17:27
478000 -- [-3921.531] (-3948.795) (-3928.677) (-3940.859) * [-3918.928] (-3931.216) (-3931.685) (-3933.547) -- 0:17:25
479000 -- (-3931.680) (-3938.288) [-3927.749] (-3944.034) * [-3915.001] (-3917.929) (-3943.173) (-3930.679) -- 0:17:23
480000 -- (-3943.558) [-3930.468] (-3924.190) (-3932.987) * (-3936.290) (-3935.113) (-3932.934) [-3920.352] -- 0:17:21
Average standard deviation of split frequencies: 0.009961
481000 -- (-3936.868) (-3947.354) [-3928.383] (-3926.592) * (-3938.085) (-3935.942) (-3936.643) [-3918.718] -- 0:17:19
482000 -- (-3927.383) (-3926.144) [-3910.404] (-3931.953) * (-3942.260) [-3913.631] (-3925.835) (-3924.820) -- 0:17:17
483000 -- (-3929.691) [-3923.506] (-3937.504) (-3929.809) * (-3922.385) (-3916.035) (-3926.107) [-3917.279] -- 0:17:15
484000 -- (-3932.205) [-3922.932] (-3932.910) (-3926.062) * (-3927.534) [-3922.959] (-3934.369) (-3920.877) -- 0:17:13
485000 -- [-3933.137] (-3940.152) (-3939.474) (-3948.133) * (-3924.590) [-3930.949] (-3952.181) (-3929.123) -- 0:17:11
Average standard deviation of split frequencies: 0.010194
486000 -- (-3938.427) (-3951.593) [-3932.242] (-3925.996) * (-3916.533) (-3934.988) (-3958.550) [-3919.368] -- 0:17:09
487000 -- (-3925.426) (-3937.570) [-3933.393] (-3926.369) * (-3931.794) (-3934.921) (-3930.718) [-3910.918] -- 0:17:07
488000 -- (-3933.848) (-3928.975) [-3922.513] (-3927.504) * [-3916.219] (-3957.143) (-3919.740) (-3935.645) -- 0:17:05
489000 -- (-3946.585) (-3937.672) [-3922.763] (-3928.813) * (-3925.169) [-3938.412] (-3917.898) (-3957.179) -- 0:17:04
490000 -- (-3931.566) (-3940.984) (-3923.520) [-3922.856] * (-3918.459) [-3925.953] (-3949.688) (-3930.295) -- 0:17:02
Average standard deviation of split frequencies: 0.010380
491000 -- (-3943.945) (-3944.785) (-3939.975) [-3925.943] * (-3938.737) (-3922.582) [-3931.733] (-3934.456) -- 0:17:00
492000 -- (-3931.003) (-3938.827) (-3930.357) [-3918.859] * (-3933.667) [-3928.171] (-3945.587) (-3924.152) -- 0:16:58
493000 -- (-3935.841) (-3925.310) (-3938.633) [-3923.324] * (-3943.906) (-3941.635) [-3932.605] (-3933.225) -- 0:16:56
494000 -- [-3917.909] (-3933.366) (-3928.997) (-3933.680) * (-3933.261) (-3916.462) [-3927.125] (-3936.702) -- 0:16:54
495000 -- [-3927.700] (-3935.298) (-3927.548) (-3927.542) * (-3923.093) [-3924.235] (-3932.811) (-3923.656) -- 0:16:52
Average standard deviation of split frequencies: 0.010100
496000 -- (-3935.994) (-3931.240) [-3922.384] (-3937.739) * (-3928.003) [-3917.879] (-3938.773) (-3916.253) -- 0:16:50
497000 -- (-3923.192) (-3942.302) [-3919.669] (-3935.325) * (-3929.614) (-3940.325) (-3925.770) [-3916.964] -- 0:16:48
498000 -- (-3921.909) (-3935.333) (-3921.279) [-3929.823] * [-3936.572] (-3930.754) (-3935.701) (-3909.857) -- 0:16:46
499000 -- (-3932.816) (-3920.001) [-3925.052] (-3931.937) * (-3939.559) (-3948.733) [-3920.308] (-3915.834) -- 0:16:44
500000 -- (-3929.360) [-3924.994] (-3947.161) (-3939.823) * (-3946.446) (-3933.953) [-3918.361] (-3933.742) -- 0:16:42
Average standard deviation of split frequencies: 0.010228
501000 -- (-3938.432) (-3928.087) (-3934.732) [-3928.431] * [-3921.726] (-3927.055) (-3922.810) (-3924.496) -- 0:16:39
502000 -- (-3943.790) (-3938.409) [-3920.353] (-3929.276) * (-3920.027) (-3943.913) (-3942.284) [-3925.550] -- 0:16:37
503000 -- (-3934.863) (-3918.525) [-3916.871] (-3927.130) * [-3928.381] (-3939.126) (-3923.974) (-3931.532) -- 0:16:35
504000 -- (-3932.192) (-3931.747) (-3944.764) [-3929.795] * (-3927.635) (-3946.225) [-3927.421] (-3932.258) -- 0:16:33
505000 -- (-3942.697) [-3928.800] (-3953.008) (-3931.273) * (-3948.967) (-3922.837) [-3922.346] (-3941.747) -- 0:16:31
Average standard deviation of split frequencies: 0.010394
506000 -- [-3927.053] (-3929.345) (-3947.673) (-3928.835) * (-3927.939) (-3921.812) (-3938.822) [-3926.229] -- 0:16:29
507000 -- (-3924.425) [-3927.520] (-3940.712) (-3924.909) * (-3921.248) (-3952.236) (-3923.018) [-3916.832] -- 0:16:27
508000 -- (-3927.516) (-3945.729) (-3939.903) [-3928.099] * [-3914.439] (-3934.809) (-3937.213) (-3935.933) -- 0:16:25
509000 -- [-3935.855] (-3938.642) (-3941.859) (-3936.108) * [-3917.678] (-3937.152) (-3942.336) (-3939.716) -- 0:16:23
510000 -- [-3922.384] (-3919.689) (-3938.815) (-3930.369) * [-3908.023] (-3946.044) (-3925.484) (-3921.937) -- 0:16:21
Average standard deviation of split frequencies: 0.010064
511000 -- (-3940.097) [-3917.160] (-3927.702) (-3928.317) * (-3915.344) (-3926.891) [-3927.839] (-3936.953) -- 0:16:19
512000 -- (-3929.543) (-3937.578) (-3940.368) [-3923.528] * (-3937.323) (-3931.906) [-3924.782] (-3933.411) -- 0:16:17
513000 -- (-3927.707) [-3917.719] (-3924.050) (-3929.433) * (-3929.138) (-3944.874) [-3912.945] (-3931.803) -- 0:16:15
514000 -- (-3919.554) (-3948.886) [-3920.730] (-3932.142) * (-3923.906) (-3938.470) [-3920.380] (-3938.925) -- 0:16:13
515000 -- (-3922.451) [-3928.372] (-3935.277) (-3930.341) * (-3926.340) (-3915.870) [-3926.085] (-3919.406) -- 0:16:11
Average standard deviation of split frequencies: 0.009745
516000 -- (-3926.741) (-3949.564) (-3925.291) [-3911.844] * [-3935.081] (-3923.151) (-3949.243) (-3936.850) -- 0:16:09
517000 -- [-3917.281] (-3934.952) (-3937.817) (-3920.486) * (-3937.943) (-3921.068) (-3957.593) [-3927.712] -- 0:16:07
518000 -- (-3926.061) (-3945.953) (-3942.783) [-3925.941] * (-3922.546) [-3913.863] (-3946.731) (-3922.438) -- 0:16:05
519000 -- (-3940.137) (-3940.133) [-3925.051] (-3934.155) * (-3952.621) [-3930.511] (-3935.640) (-3928.435) -- 0:16:03
520000 -- (-3956.407) (-3931.266) [-3932.494] (-3935.112) * (-3942.546) [-3932.172] (-3933.419) (-3926.386) -- 0:16:01
Average standard deviation of split frequencies: 0.009515
521000 -- (-3931.295) [-3918.552] (-3916.604) (-3936.379) * [-3917.204] (-3924.413) (-3933.683) (-3929.451) -- 0:15:59
522000 -- [-3922.205] (-3926.920) (-3927.925) (-3936.983) * [-3930.951] (-3939.873) (-3943.488) (-3934.394) -- 0:15:57
523000 -- (-3943.405) (-3943.308) [-3927.540] (-3930.674) * (-3931.315) (-3936.873) [-3922.285] (-3936.427) -- 0:15:55
524000 -- (-3930.313) [-3933.309] (-3954.011) (-3938.864) * (-3918.561) (-3946.332) [-3923.411] (-3929.302) -- 0:15:53
525000 -- (-3931.721) (-3928.523) (-3949.426) [-3920.058] * (-3923.449) [-3925.219] (-3933.777) (-3936.806) -- 0:15:51
Average standard deviation of split frequencies: 0.009410
526000 -- (-3931.230) [-3915.817] (-3950.320) (-3925.618) * [-3914.329] (-3925.429) (-3933.839) (-3942.345) -- 0:15:49
527000 -- (-3931.074) (-3924.959) (-3946.429) [-3930.316] * [-3927.201] (-3916.508) (-3930.508) (-3936.515) -- 0:15:47
528000 -- (-3946.509) (-3922.456) (-3933.521) [-3926.738] * (-3950.018) (-3919.680) (-3932.816) [-3926.153] -- 0:15:45
529000 -- [-3927.253] (-3916.102) (-3932.118) (-3927.991) * (-3921.576) [-3924.958] (-3940.933) (-3949.912) -- 0:15:43
530000 -- [-3923.392] (-3945.283) (-3928.902) (-3928.787) * (-3934.108) [-3915.257] (-3930.125) (-3955.428) -- 0:15:41
Average standard deviation of split frequencies: 0.009515
531000 -- (-3918.927) (-3935.991) [-3924.869] (-3928.913) * [-3932.876] (-3926.613) (-3923.534) (-3940.873) -- 0:15:39
532000 -- (-3935.253) (-3933.574) (-3936.543) [-3933.088] * (-3925.220) [-3920.453] (-3930.931) (-3956.814) -- 0:15:37
533000 -- [-3928.673] (-3934.037) (-3934.003) (-3944.381) * (-3938.566) (-3940.684) [-3917.480] (-3926.671) -- 0:15:35
534000 -- [-3925.091] (-3936.483) (-3933.638) (-3931.424) * (-3932.847) (-3929.443) [-3911.563] (-3936.540) -- 0:15:33
535000 -- [-3922.024] (-3940.659) (-3939.484) (-3917.089) * [-3916.954] (-3928.017) (-3928.286) (-3954.866) -- 0:15:31
Average standard deviation of split frequencies: 0.009364
536000 -- (-3928.331) [-3929.731] (-3931.316) (-3923.926) * (-3917.475) (-3940.676) [-3925.652] (-3939.158) -- 0:15:29
537000 -- (-3924.701) (-3926.059) (-3923.714) [-3926.659] * [-3919.695] (-3948.453) (-3934.208) (-3921.919) -- 0:15:27
538000 -- [-3918.235] (-3936.774) (-3929.961) (-3928.825) * (-3919.382) (-3941.210) [-3928.561] (-3939.209) -- 0:15:25
539000 -- (-3937.908) (-3922.519) (-3919.629) [-3913.198] * [-3922.949] (-3939.342) (-3926.805) (-3933.520) -- 0:15:23
540000 -- [-3917.350] (-3916.635) (-3938.632) (-3936.295) * [-3926.660] (-3920.694) (-3936.639) (-3922.318) -- 0:15:21
Average standard deviation of split frequencies: 0.009403
541000 -- (-3931.881) (-3930.032) [-3915.816] (-3936.617) * (-3930.016) (-3943.401) (-3935.998) [-3925.865] -- 0:15:19
542000 -- (-3934.713) [-3927.343] (-3939.350) (-3916.626) * (-3931.699) (-3914.606) (-3945.553) [-3911.658] -- 0:15:17
543000 -- (-3921.743) (-3938.753) [-3926.449] (-3927.715) * (-3915.170) [-3917.004] (-3921.568) (-3926.237) -- 0:15:15
544000 -- [-3922.905] (-3932.964) (-3924.606) (-3943.177) * [-3919.066] (-3931.825) (-3921.684) (-3943.251) -- 0:15:13
545000 -- (-3928.313) (-3940.466) (-3939.170) [-3921.457] * [-3920.196] (-3938.673) (-3933.651) (-3944.276) -- 0:15:11
Average standard deviation of split frequencies: 0.009580
546000 -- (-3936.218) (-3940.712) (-3928.659) [-3914.584] * (-3942.887) [-3928.702] (-3949.145) (-3936.238) -- 0:15:09
547000 -- (-3922.537) (-3943.499) [-3925.022] (-3919.960) * [-3932.922] (-3936.183) (-3931.636) (-3928.468) -- 0:15:07
548000 -- (-3938.323) [-3944.735] (-3940.165) (-3927.786) * (-3928.438) [-3930.793] (-3956.633) (-3917.765) -- 0:15:05
549000 -- (-3938.200) (-3948.589) (-3945.910) [-3919.745] * [-3920.295] (-3921.470) (-3930.262) (-3928.119) -- 0:15:03
550000 -- (-3921.837) [-3922.484] (-3922.094) (-3928.168) * (-3933.938) (-3925.269) [-3930.948] (-3923.930) -- 0:15:01
Average standard deviation of split frequencies: 0.009515
551000 -- (-3922.636) [-3927.362] (-3924.700) (-3955.990) * (-3937.433) [-3927.979] (-3929.029) (-3932.107) -- 0:14:59
552000 -- [-3931.557] (-3925.258) (-3941.428) (-3933.539) * (-3938.571) [-3921.452] (-3921.223) (-3923.358) -- 0:14:57
553000 -- (-3933.161) [-3925.366] (-3947.179) (-3933.838) * [-3929.148] (-3935.209) (-3935.775) (-3920.396) -- 0:14:55
554000 -- (-3947.565) [-3922.328] (-3940.266) (-3936.311) * (-3926.606) (-3941.562) (-3935.644) [-3930.786] -- 0:14:53
555000 -- (-3936.822) (-3927.098) (-3926.951) [-3921.926] * [-3920.796] (-3931.455) (-3934.211) (-3930.822) -- 0:14:51
Average standard deviation of split frequencies: 0.009143
556000 -- (-3934.114) (-3942.217) (-3927.097) [-3927.222] * [-3925.047] (-3921.374) (-3948.191) (-3925.449) -- 0:14:49
557000 -- (-3928.757) (-3927.384) [-3932.751] (-3931.245) * (-3917.534) (-3943.426) [-3925.746] (-3931.528) -- 0:14:47
558000 -- (-3920.612) (-3936.161) (-3924.047) [-3930.733] * (-3918.309) (-3936.420) [-3907.889] (-3935.225) -- 0:14:45
559000 -- (-3940.359) (-3926.238) (-3936.392) [-3920.800] * (-3941.247) [-3937.997] (-3927.593) (-3933.908) -- 0:14:43
560000 -- (-3926.301) (-3932.382) [-3920.990] (-3941.887) * (-3952.564) (-3922.194) (-3935.359) [-3925.165] -- 0:14:41
Average standard deviation of split frequencies: 0.009265
561000 -- [-3922.300] (-3920.319) (-3924.826) (-3944.373) * (-3938.497) [-3912.045] (-3943.001) (-3925.563) -- 0:14:39
562000 -- [-3916.800] (-3933.987) (-3923.228) (-3952.779) * (-3930.645) [-3924.559] (-3936.104) (-3940.830) -- 0:14:37
563000 -- (-3940.525) [-3929.804] (-3929.964) (-3933.522) * (-3935.058) [-3934.802] (-3942.136) (-3921.099) -- 0:14:35
564000 -- [-3919.763] (-3926.979) (-3932.543) (-3927.930) * (-3929.764) (-3932.900) (-3937.093) [-3923.765] -- 0:14:33
565000 -- (-3947.975) (-3927.597) (-3922.119) [-3917.740] * (-3931.761) (-3932.076) [-3924.954] (-3932.727) -- 0:14:31
Average standard deviation of split frequencies: 0.009178
566000 -- (-3953.803) [-3932.413] (-3946.262) (-3929.632) * (-3937.501) (-3915.232) [-3929.851] (-3925.001) -- 0:14:29
567000 -- (-3947.419) [-3921.602] (-3923.672) (-3922.903) * (-3936.580) [-3910.703] (-3939.314) (-3928.140) -- 0:14:27
568000 -- (-3946.500) (-3928.354) (-3918.910) [-3924.817] * (-3926.398) [-3919.348] (-3938.529) (-3944.192) -- 0:14:25
569000 -- (-3934.645) (-3924.634) [-3925.320] (-3944.820) * (-3915.863) (-3924.450) [-3923.642] (-3942.584) -- 0:14:23
570000 -- (-3948.635) (-3930.129) (-3929.143) [-3921.789] * (-3919.541) [-3914.425] (-3933.891) (-3932.193) -- 0:14:21
Average standard deviation of split frequencies: 0.009411
571000 -- [-3918.447] (-3935.449) (-3929.650) (-3929.007) * [-3919.706] (-3936.148) (-3934.276) (-3926.321) -- 0:14:19
572000 -- [-3923.141] (-3935.332) (-3922.011) (-3943.945) * (-3932.859) (-3923.804) (-3926.897) [-3914.944] -- 0:14:17
573000 -- (-3941.322) (-3943.845) [-3921.311] (-3928.710) * (-3920.534) [-3935.186] (-3938.191) (-3931.645) -- 0:14:15
574000 -- (-3926.360) (-3931.252) (-3930.585) [-3925.684] * [-3918.970] (-3940.157) (-3939.027) (-3929.911) -- 0:14:13
575000 -- (-3937.182) [-3945.799] (-3930.147) (-3934.664) * (-3921.760) (-3935.454) [-3925.748] (-3924.960) -- 0:14:11
Average standard deviation of split frequencies: 0.009291
576000 -- (-3924.224) (-3930.200) (-3949.012) [-3920.858] * (-3933.192) [-3942.714] (-3922.623) (-3943.809) -- 0:14:09
577000 -- (-3921.363) (-3926.578) [-3931.421] (-3918.143) * (-3928.570) [-3917.724] (-3928.918) (-3953.332) -- 0:14:07
578000 -- (-3927.266) (-3936.256) (-3935.300) [-3919.367] * [-3919.463] (-3929.885) (-3943.587) (-3947.776) -- 0:14:05
579000 -- [-3933.830] (-3925.970) (-3924.222) (-3932.871) * [-3937.298] (-3928.257) (-3949.273) (-3937.336) -- 0:14:03
580000 -- (-3925.521) (-3934.869) (-3933.373) [-3926.710] * [-3919.717] (-3924.177) (-3954.354) (-3929.955) -- 0:14:01
Average standard deviation of split frequencies: 0.009137
581000 -- (-3921.008) (-3939.496) (-3929.644) [-3929.653] * [-3914.401] (-3921.097) (-3939.834) (-3932.190) -- 0:13:59
582000 -- [-3918.766] (-3914.334) (-3922.575) (-3947.459) * [-3918.826] (-3935.738) (-3945.672) (-3930.652) -- 0:13:57
583000 -- (-3933.386) [-3923.731] (-3932.190) (-3948.956) * (-3919.252) (-3926.098) [-3925.273] (-3933.161) -- 0:13:55
584000 -- [-3936.324] (-3922.328) (-3934.676) (-3937.115) * [-3918.895] (-3936.468) (-3932.431) (-3919.989) -- 0:13:53
585000 -- (-3925.356) (-3924.944) [-3928.601] (-3938.960) * (-3922.801) (-3960.613) [-3925.686] (-3925.610) -- 0:13:51
Average standard deviation of split frequencies: 0.009189
586000 -- [-3932.229] (-3931.843) (-3946.900) (-3929.045) * [-3929.011] (-3955.802) (-3922.713) (-3938.607) -- 0:13:49
587000 -- (-3925.129) (-3929.206) [-3923.540] (-3940.513) * (-3933.941) (-3949.737) [-3923.062] (-3933.781) -- 0:13:47
588000 -- (-3952.722) (-3928.861) [-3930.105] (-3932.134) * (-3921.534) (-3944.595) [-3917.640] (-3928.602) -- 0:13:45
589000 -- (-3940.415) (-3925.263) [-3923.006] (-3934.471) * (-3943.826) (-3923.198) (-3919.266) [-3930.836] -- 0:13:43
590000 -- [-3920.497] (-3926.467) (-3930.781) (-3934.551) * [-3930.314] (-3943.459) (-3930.798) (-3929.028) -- 0:13:41
Average standard deviation of split frequencies: 0.009517
591000 -- (-3940.979) [-3913.092] (-3921.902) (-3925.502) * (-3938.785) (-3945.519) [-3923.257] (-3936.191) -- 0:13:39
592000 -- (-3924.511) [-3920.396] (-3937.465) (-3929.734) * [-3926.012] (-3933.190) (-3933.104) (-3941.667) -- 0:13:37
593000 -- (-3929.571) (-3934.321) (-3931.531) [-3911.397] * [-3923.859] (-3938.599) (-3937.633) (-3921.724) -- 0:13:35
594000 -- (-3938.455) [-3934.170] (-3932.588) (-3933.231) * (-3921.660) [-3926.644] (-3935.022) (-3943.302) -- 0:13:33
595000 -- (-3937.691) [-3926.471] (-3941.334) (-3917.890) * (-3931.539) [-3917.670] (-3934.732) (-3947.438) -- 0:13:31
Average standard deviation of split frequencies: 0.009148
596000 -- (-3933.010) (-3937.371) (-3936.123) [-3924.508] * (-3934.541) [-3927.354] (-3941.658) (-3938.787) -- 0:13:29
597000 -- [-3912.541] (-3939.469) (-3931.825) (-3928.463) * [-3927.491] (-3932.035) (-3935.790) (-3939.701) -- 0:13:27
598000 -- (-3925.275) [-3918.525] (-3933.724) (-3934.824) * [-3913.668] (-3931.772) (-3935.852) (-3938.222) -- 0:13:25
599000 -- (-3940.700) (-3926.935) (-3918.971) [-3922.244] * [-3914.609] (-3951.959) (-3923.333) (-3942.095) -- 0:13:23
600000 -- (-3942.331) (-3932.387) (-3934.788) [-3921.596] * (-3920.861) (-3943.393) [-3924.902] (-3928.623) -- 0:13:21
Average standard deviation of split frequencies: 0.009033
601000 -- [-3940.055] (-3932.019) (-3950.632) (-3945.979) * (-3922.498) (-3933.027) (-3947.465) [-3926.882] -- 0:13:19
602000 -- [-3925.303] (-3944.839) (-3945.409) (-3940.269) * [-3924.453] (-3925.301) (-3921.645) (-3934.125) -- 0:13:17
603000 -- [-3928.016] (-3922.934) (-3935.000) (-3925.449) * [-3910.986] (-3939.624) (-3940.094) (-3916.268) -- 0:13:15
604000 -- (-3937.302) (-3923.326) (-3934.214) [-3921.107] * (-3926.015) [-3915.384] (-3932.441) (-3934.953) -- 0:13:13
605000 -- (-3927.195) [-3922.520] (-3938.296) (-3922.109) * (-3920.685) [-3926.302] (-3936.466) (-3937.901) -- 0:13:11
Average standard deviation of split frequencies: 0.009290
606000 -- (-3930.405) (-3928.411) [-3932.387] (-3941.918) * [-3920.481] (-3921.464) (-3942.260) (-3946.397) -- 0:13:09
607000 -- (-3934.314) (-3926.768) [-3918.962] (-3938.529) * [-3921.705] (-3930.016) (-3926.777) (-3934.959) -- 0:13:07
608000 -- (-3947.363) (-3932.080) [-3922.723] (-3948.315) * [-3922.686] (-3939.524) (-3943.834) (-3917.868) -- 0:13:05
609000 -- (-3930.695) (-3936.846) [-3908.047] (-3921.934) * (-3941.466) (-3926.717) (-3938.708) [-3921.812] -- 0:13:03
610000 -- [-3926.537] (-3940.427) (-3934.307) (-3914.241) * (-3923.303) (-3932.560) [-3923.115] (-3925.072) -- 0:13:01
Average standard deviation of split frequencies: 0.009115
611000 -- [-3925.875] (-3929.900) (-3938.074) (-3918.437) * (-3915.678) (-3931.491) [-3925.797] (-3935.032) -- 0:12:59
612000 -- (-3933.494) (-3925.155) [-3932.341] (-3934.922) * (-3941.742) (-3950.400) (-3942.890) [-3925.327] -- 0:12:57
613000 -- (-3925.407) [-3922.541] (-3930.787) (-3939.687) * (-3921.324) (-3937.993) [-3929.300] (-3914.849) -- 0:12:55
614000 -- (-3945.245) [-3925.259] (-3924.951) (-3948.521) * [-3931.185] (-3939.880) (-3924.611) (-3951.189) -- 0:12:53
615000 -- [-3920.310] (-3938.587) (-3926.113) (-3940.716) * [-3916.831] (-3920.240) (-3933.178) (-3949.760) -- 0:12:51
Average standard deviation of split frequencies: 0.008918
616000 -- (-3926.237) [-3921.393] (-3931.776) (-3947.524) * (-3913.320) [-3922.339] (-3924.306) (-3946.650) -- 0:12:49
617000 -- (-3944.656) (-3929.724) [-3916.251] (-3926.746) * (-3936.321) [-3915.029] (-3927.581) (-3946.419) -- 0:12:47
618000 -- (-3945.255) (-3939.122) [-3919.898] (-3925.208) * [-3918.802] (-3928.117) (-3916.592) (-3933.303) -- 0:12:45
619000 -- (-3940.794) (-3931.186) (-3928.490) [-3934.606] * (-3934.182) (-3932.845) [-3915.070] (-3922.635) -- 0:12:43
620000 -- (-3930.667) (-3934.451) [-3918.921] (-3942.692) * (-3936.866) (-3949.369) [-3924.965] (-3922.679) -- 0:12:41
Average standard deviation of split frequencies: 0.009158
621000 -- (-3939.198) (-3935.146) (-3920.116) [-3920.838] * (-3922.084) (-3930.306) [-3928.039] (-3938.202) -- 0:12:39
622000 -- (-3928.398) (-3928.647) [-3919.150] (-3926.376) * (-3940.073) (-3935.180) [-3920.840] (-3929.588) -- 0:12:37
623000 -- [-3920.646] (-3919.520) (-3923.397) (-3922.411) * (-3929.516) (-3919.466) [-3930.530] (-3930.243) -- 0:12:35
624000 -- (-3932.067) [-3921.588] (-3922.639) (-3929.208) * (-3928.719) (-3936.403) [-3925.795] (-3933.464) -- 0:12:33
625000 -- (-3942.494) (-3941.386) (-3915.431) [-3921.484] * (-3934.427) (-3925.204) [-3917.167] (-3934.659) -- 0:12:31
Average standard deviation of split frequencies: 0.009500
626000 -- (-3926.234) (-3942.536) (-3937.488) [-3925.257] * (-3929.935) [-3915.715] (-3926.791) (-3954.235) -- 0:12:29
627000 -- (-3932.274) (-3916.628) [-3935.281] (-3928.443) * (-3923.050) (-3927.078) (-3939.906) [-3924.319] -- 0:12:27
628000 -- [-3931.162] (-3915.178) (-3937.281) (-3935.437) * [-3912.998] (-3937.235) (-3926.455) (-3927.821) -- 0:12:25
629000 -- (-3928.548) (-3940.461) [-3921.191] (-3939.792) * (-3940.200) (-3933.471) (-3940.595) [-3926.856] -- 0:12:23
630000 -- (-3936.873) [-3916.741] (-3915.473) (-3936.216) * (-3944.670) (-3932.442) [-3925.237] (-3916.365) -- 0:12:21
Average standard deviation of split frequencies: 0.009631
631000 -- (-3935.750) (-3924.760) [-3926.940] (-3937.766) * (-3932.621) (-3948.332) (-3941.812) [-3931.553] -- 0:12:19
632000 -- (-3929.180) (-3927.287) [-3937.243] (-3935.543) * (-3929.635) (-3937.489) (-3928.264) [-3921.331] -- 0:12:17
633000 -- (-3943.408) [-3921.213] (-3948.155) (-3922.355) * (-3920.606) (-3932.200) (-3927.001) [-3915.707] -- 0:12:15
634000 -- (-3946.372) (-3932.875) (-3942.541) [-3916.824] * (-3929.449) (-3940.649) [-3939.802] (-3920.691) -- 0:12:13
635000 -- (-3922.900) (-3947.954) (-3942.161) [-3911.894] * (-3919.488) (-3936.530) (-3955.385) [-3922.163] -- 0:12:11
Average standard deviation of split frequencies: 0.009955
636000 -- [-3930.714] (-3936.268) (-3926.434) (-3926.015) * (-3934.184) [-3923.695] (-3950.751) (-3937.247) -- 0:12:09
637000 -- (-3951.006) (-3937.308) (-3925.826) [-3920.773] * (-3944.098) [-3929.445] (-3927.878) (-3925.843) -- 0:12:07
638000 -- (-3941.622) (-3942.590) [-3919.795] (-3933.824) * (-3954.361) (-3928.615) [-3930.379] (-3950.735) -- 0:12:05
639000 -- [-3918.899] (-3931.886) (-3929.140) (-3932.284) * (-3936.236) (-3935.463) (-3929.614) [-3924.742] -- 0:12:03
640000 -- (-3930.103) [-3921.188] (-3917.538) (-3933.847) * (-3923.729) [-3918.396] (-3930.118) (-3931.867) -- 0:12:01
Average standard deviation of split frequencies: 0.009883
641000 -- [-3924.307] (-3932.529) (-3921.647) (-3936.403) * (-3939.930) (-3920.621) (-3930.652) [-3923.182] -- 0:11:59
642000 -- [-3939.725] (-3939.221) (-3928.317) (-3939.258) * [-3930.196] (-3929.685) (-3930.924) (-3919.462) -- 0:11:57
643000 -- (-3929.555) (-3927.267) [-3928.887] (-3951.102) * (-3931.758) (-3932.008) (-3930.856) [-3923.166] -- 0:11:55
644000 -- (-3936.981) [-3916.875] (-3925.989) (-3941.470) * (-3936.823) [-3926.048] (-3917.304) (-3941.275) -- 0:11:53
645000 -- (-3934.942) (-3933.634) (-3922.166) [-3931.812] * (-3939.890) (-3937.557) (-3936.178) [-3915.401] -- 0:11:51
Average standard deviation of split frequencies: 0.009630
646000 -- (-3926.919) (-3929.383) (-3927.927) [-3920.169] * (-3933.106) (-3943.493) [-3926.741] (-3930.998) -- 0:11:49
647000 -- (-3941.218) (-3932.056) (-3942.460) [-3925.688] * [-3926.500] (-3933.792) (-3938.784) (-3942.447) -- 0:11:47
648000 -- (-3924.297) (-3937.133) [-3927.238] (-3933.293) * (-3943.060) [-3931.138] (-3930.645) (-3916.318) -- 0:11:45
649000 -- (-3925.855) (-3946.514) [-3925.178] (-3939.453) * [-3910.895] (-3965.763) (-3931.447) (-3922.124) -- 0:11:43
650000 -- (-3930.612) [-3926.276] (-3929.830) (-3937.628) * [-3914.543] (-3950.664) (-3938.031) (-3934.527) -- 0:11:41
Average standard deviation of split frequencies: 0.009944
651000 -- (-3921.951) [-3923.205] (-3938.724) (-3931.537) * (-3931.369) (-3926.180) (-3933.475) [-3917.633] -- 0:11:39
652000 -- (-3911.144) (-3935.815) (-3961.573) [-3917.128] * (-3938.544) (-3933.992) (-3930.817) [-3916.348] -- 0:11:37
653000 -- [-3925.532] (-3921.620) (-3933.068) (-3952.711) * [-3919.391] (-3922.812) (-3948.480) (-3923.781) -- 0:11:35
654000 -- (-3940.543) [-3922.442] (-3933.364) (-3922.637) * (-3938.870) (-3930.261) (-3960.548) [-3923.037] -- 0:11:33
655000 -- (-3933.339) (-3926.202) (-3947.218) [-3923.188] * (-3926.319) [-3919.678] (-3932.458) (-3923.264) -- 0:11:31
Average standard deviation of split frequencies: 0.009895
656000 -- (-3945.780) [-3923.977] (-3936.476) (-3932.950) * (-3927.141) (-3928.906) [-3924.230] (-3921.655) -- 0:11:29
657000 -- (-3940.177) [-3923.183] (-3937.321) (-3932.967) * [-3919.322] (-3948.622) (-3924.517) (-3929.037) -- 0:11:27
658000 -- (-3925.425) (-3929.046) (-3938.330) [-3920.855] * [-3934.881] (-3944.848) (-3936.031) (-3932.242) -- 0:11:25
659000 -- [-3919.705] (-3938.222) (-3946.182) (-3939.443) * (-3933.916) (-3940.621) [-3923.831] (-3949.104) -- 0:11:23
660000 -- [-3921.978] (-3935.080) (-3927.738) (-3935.746) * (-3935.237) (-3943.219) [-3916.618] (-3938.637) -- 0:11:21
Average standard deviation of split frequencies: 0.010250
661000 -- (-3917.346) [-3925.681] (-3924.281) (-3928.611) * (-3936.274) (-3943.923) [-3927.517] (-3933.272) -- 0:11:19
662000 -- [-3923.818] (-3946.686) (-3923.800) (-3946.697) * [-3936.738] (-3936.147) (-3923.312) (-3925.490) -- 0:11:17
663000 -- (-3928.432) [-3924.957] (-3927.183) (-3933.816) * [-3920.673] (-3932.392) (-3930.206) (-3938.309) -- 0:11:15
664000 -- [-3933.370] (-3935.194) (-3915.301) (-3935.007) * (-3921.884) (-3926.961) (-3941.429) [-3917.706] -- 0:11:13
665000 -- (-3927.022) (-3930.464) [-3924.196] (-3935.860) * (-3928.383) (-3937.753) (-3941.293) [-3930.652] -- 0:11:11
Average standard deviation of split frequencies: 0.010141
666000 -- [-3923.369] (-3934.128) (-3931.490) (-3927.684) * (-3927.044) (-3907.806) (-3931.899) [-3927.580] -- 0:11:09
667000 -- [-3923.852] (-3946.760) (-3922.815) (-3929.496) * (-3924.223) (-3922.341) [-3911.500] (-3925.936) -- 0:11:07
668000 -- (-3927.428) (-3932.864) (-3954.336) [-3931.613] * (-3941.227) (-3931.056) [-3914.510] (-3930.147) -- 0:11:05
669000 -- [-3918.504] (-3932.781) (-3934.688) (-3921.538) * (-3919.478) [-3926.538] (-3930.373) (-3922.498) -- 0:11:03
670000 -- [-3921.392] (-3931.528) (-3949.227) (-3943.404) * (-3928.553) (-3944.361) [-3936.322] (-3931.415) -- 0:11:01
Average standard deviation of split frequencies: 0.010422
671000 -- (-3926.019) [-3919.742] (-3926.827) (-3932.557) * (-3924.160) (-3928.549) [-3916.089] (-3936.763) -- 0:10:59
672000 -- (-3932.568) [-3925.260] (-3938.914) (-3914.366) * (-3941.255) (-3927.535) [-3923.517] (-3934.308) -- 0:10:57
673000 -- (-3928.774) (-3937.729) (-3923.509) [-3915.956] * (-3937.911) [-3935.663] (-3936.041) (-3929.088) -- 0:10:55
674000 -- (-3933.364) (-3936.220) [-3926.189] (-3929.241) * (-3929.221) (-3938.429) (-3951.579) [-3923.714] -- 0:10:53
675000 -- (-3941.516) (-3929.470) (-3929.059) [-3922.951] * (-3934.615) (-3926.949) (-3920.973) [-3924.309] -- 0:10:51
Average standard deviation of split frequencies: 0.010138
676000 -- (-3929.537) (-3925.319) [-3922.199] (-3944.906) * [-3933.429] (-3936.996) (-3936.240) (-3926.590) -- 0:10:49
677000 -- (-3930.402) [-3928.497] (-3937.964) (-3932.475) * (-3943.578) [-3919.040] (-3926.792) (-3926.970) -- 0:10:47
678000 -- [-3928.762] (-3921.733) (-3940.021) (-3925.790) * (-3933.086) [-3929.129] (-3918.290) (-3936.577) -- 0:10:45
679000 -- [-3918.735] (-3942.209) (-3930.742) (-3933.081) * (-3933.592) [-3930.895] (-3939.813) (-3924.600) -- 0:10:43
680000 -- (-3943.768) [-3913.570] (-3929.544) (-3921.504) * (-3953.016) [-3916.233] (-3928.696) (-3929.706) -- 0:10:41
Average standard deviation of split frequencies: 0.010269
681000 -- (-3926.737) [-3922.193] (-3953.693) (-3930.731) * (-3940.294) (-3917.584) [-3917.149] (-3929.835) -- 0:10:39
682000 -- (-3929.363) [-3926.383] (-3939.265) (-3918.349) * [-3936.519] (-3933.588) (-3937.607) (-3951.088) -- 0:10:37
683000 -- [-3927.778] (-3930.279) (-3934.499) (-3935.264) * (-3943.592) (-3940.648) [-3925.241] (-3934.499) -- 0:10:35
684000 -- (-3923.728) (-3933.274) [-3932.993] (-3941.156) * (-3944.608) [-3929.113] (-3949.641) (-3934.654) -- 0:10:33
685000 -- (-3942.438) (-3952.665) [-3927.719] (-3927.693) * [-3918.556] (-3923.685) (-3942.119) (-3925.752) -- 0:10:31
Average standard deviation of split frequencies: 0.010242
686000 -- (-3927.503) (-3936.096) [-3919.302] (-3929.019) * [-3925.388] (-3940.101) (-3949.112) (-3929.405) -- 0:10:29
687000 -- (-3925.122) [-3929.177] (-3930.307) (-3927.168) * [-3919.848] (-3944.839) (-3936.371) (-3931.813) -- 0:10:27
688000 -- [-3920.559] (-3940.845) (-3944.448) (-3929.293) * [-3925.132] (-3925.448) (-3931.274) (-3926.160) -- 0:10:25
689000 -- (-3947.280) [-3929.002] (-3934.148) (-3930.818) * (-3934.378) [-3920.525] (-3921.704) (-3935.792) -- 0:10:23
690000 -- (-3932.785) [-3926.565] (-3940.003) (-3928.824) * [-3919.926] (-3932.381) (-3946.676) (-3931.459) -- 0:10:21
Average standard deviation of split frequencies: 0.010461
691000 -- (-3949.161) [-3922.322] (-3925.692) (-3939.333) * [-3915.445] (-3930.276) (-3935.617) (-3937.239) -- 0:10:19
692000 -- [-3909.771] (-3947.921) (-3931.486) (-3941.190) * (-3929.626) (-3928.967) [-3926.196] (-3944.298) -- 0:10:17
693000 -- [-3926.873] (-3950.011) (-3941.304) (-3952.090) * [-3925.722] (-3942.311) (-3930.100) (-3931.284) -- 0:10:15
694000 -- (-3919.510) [-3927.359] (-3951.956) (-3932.091) * [-3924.849] (-3938.499) (-3935.918) (-3940.254) -- 0:10:13
695000 -- [-3921.714] (-3968.393) (-3941.621) (-3926.771) * (-3933.607) (-3926.547) (-3935.263) [-3935.644] -- 0:10:11
Average standard deviation of split frequencies: 0.010381
696000 -- (-3919.617) (-3935.028) (-3936.354) [-3918.936] * (-3938.207) [-3929.890] (-3936.770) (-3930.669) -- 0:10:09
697000 -- [-3926.796] (-3927.167) (-3929.729) (-3921.578) * (-3923.816) (-3926.957) [-3917.109] (-3941.968) -- 0:10:07
698000 -- (-3933.559) (-3936.147) (-3927.456) [-3929.923] * (-3930.770) (-3945.676) [-3913.320] (-3931.140) -- 0:10:05
699000 -- (-3931.525) (-3925.650) [-3929.938] (-3929.586) * (-3938.490) (-3918.400) [-3935.080] (-3946.864) -- 0:10:03
700000 -- (-3935.922) [-3916.891] (-3923.518) (-3921.749) * (-3921.043) (-3924.750) (-3927.007) [-3914.221] -- 0:10:01
Average standard deviation of split frequencies: 0.009657
701000 -- (-3929.131) [-3917.213] (-3931.223) (-3928.249) * (-3926.692) [-3927.550] (-3930.418) (-3919.680) -- 0:09:59
702000 -- [-3925.152] (-3938.051) (-3920.055) (-3925.873) * (-3951.761) (-3938.036) [-3922.341] (-3920.430) -- 0:09:57
703000 -- [-3923.414] (-3944.404) (-3921.880) (-3931.019) * (-3922.826) (-3930.003) (-3945.685) [-3925.220] -- 0:09:55
704000 -- [-3932.346] (-3946.336) (-3938.251) (-3922.066) * [-3922.697] (-3933.192) (-3921.637) (-3932.896) -- 0:09:53
705000 -- (-3941.853) (-3948.501) [-3932.960] (-3923.048) * [-3927.919] (-3934.309) (-3941.760) (-3929.639) -- 0:09:51
Average standard deviation of split frequencies: 0.009386
706000 -- [-3919.558] (-3933.407) (-3928.118) (-3925.874) * (-3931.496) (-3931.587) (-3928.244) [-3918.610] -- 0:09:49
707000 -- (-3937.497) (-3934.655) (-3938.138) [-3936.423] * (-3926.589) (-3937.077) (-3937.975) [-3919.257] -- 0:09:47
708000 -- (-3937.267) [-3926.646] (-3928.530) (-3937.762) * (-3929.613) (-3943.706) (-3934.649) [-3925.194] -- 0:09:45
709000 -- (-3937.455) (-3926.640) (-3947.950) [-3921.531] * (-3934.876) [-3928.915] (-3937.600) (-3926.365) -- 0:09:43
710000 -- (-3935.928) (-3940.944) [-3922.766] (-3920.428) * (-3927.878) [-3934.283] (-3925.762) (-3932.120) -- 0:09:41
Average standard deviation of split frequencies: 0.009223
711000 -- (-3938.562) [-3921.935] (-3922.857) (-3939.017) * (-3928.652) [-3921.833] (-3942.045) (-3938.503) -- 0:09:39
712000 -- (-3928.299) [-3917.676] (-3923.059) (-3922.852) * (-3922.233) (-3936.688) (-3944.296) [-3929.781] -- 0:09:37
713000 -- (-3948.057) (-3931.851) [-3911.731] (-3930.273) * [-3918.693] (-3937.125) (-3933.629) (-3929.033) -- 0:09:35
714000 -- (-3928.129) (-3928.659) (-3923.000) [-3924.482] * [-3925.136] (-3952.800) (-3926.118) (-3926.741) -- 0:09:33
715000 -- (-3942.104) (-3941.703) (-3930.713) [-3914.020] * (-3928.998) [-3932.241] (-3941.729) (-3920.627) -- 0:09:31
Average standard deviation of split frequencies: 0.008714
716000 -- (-3923.304) (-3942.828) (-3916.990) [-3927.224] * [-3931.190] (-3944.489) (-3934.238) (-3919.199) -- 0:09:29
717000 -- (-3940.315) (-3933.970) [-3921.206] (-3939.063) * (-3922.632) (-3940.370) [-3917.065] (-3931.777) -- 0:09:27
718000 -- [-3916.259] (-3938.352) (-3941.338) (-3920.375) * (-3930.062) (-3938.770) (-3945.328) [-3920.195] -- 0:09:25
719000 -- [-3915.945] (-3944.539) (-3937.411) (-3918.356) * (-3922.559) [-3926.745] (-3939.587) (-3941.163) -- 0:09:23
720000 -- (-3945.915) (-3931.017) [-3925.370] (-3925.080) * (-3927.724) [-3914.905] (-3932.220) (-3936.251) -- 0:09:21
Average standard deviation of split frequencies: 0.008606
721000 -- (-3929.216) (-3930.508) (-3931.443) [-3930.839] * [-3923.344] (-3938.047) (-3937.823) (-3928.160) -- 0:09:19
722000 -- (-3918.796) (-3922.278) (-3949.585) [-3930.922] * [-3931.590] (-3936.825) (-3932.868) (-3932.889) -- 0:09:17
723000 -- [-3936.802] (-3926.880) (-3945.356) (-3932.624) * [-3936.207] (-3944.515) (-3955.099) (-3918.332) -- 0:09:15
724000 -- (-3926.447) (-3943.903) (-3942.869) [-3921.035] * (-3930.603) (-3941.900) [-3933.373] (-3926.249) -- 0:09:13
725000 -- [-3922.578] (-3925.347) (-3931.874) (-3938.818) * [-3926.481] (-3925.282) (-3927.596) (-3942.456) -- 0:09:11
Average standard deviation of split frequencies: 0.008492
726000 -- (-3936.427) [-3930.172] (-3932.674) (-3946.200) * (-3925.621) (-3932.912) [-3932.691] (-3935.441) -- 0:09:09
727000 -- (-3954.820) (-3924.391) (-3930.990) [-3925.512] * (-3928.691) (-3949.599) (-3939.674) [-3928.544] -- 0:09:07
728000 -- (-3938.008) (-3924.417) (-3927.168) [-3932.102] * (-3938.298) (-3924.863) (-3926.598) [-3921.270] -- 0:09:05
729000 -- (-3934.476) (-3925.970) [-3916.509] (-3931.670) * (-3953.491) (-3916.520) [-3922.491] (-3942.463) -- 0:09:03
730000 -- (-3924.526) (-3942.565) [-3927.487] (-3927.961) * (-3927.265) (-3934.792) (-3939.489) [-3931.926] -- 0:09:01
Average standard deviation of split frequencies: 0.008577
731000 -- [-3934.745] (-3932.187) (-3944.264) (-3949.254) * (-3940.928) [-3933.849] (-3943.309) (-3934.417) -- 0:08:59
732000 -- (-3927.162) [-3923.800] (-3943.934) (-3934.887) * (-3934.977) (-3921.420) (-3944.134) [-3928.296] -- 0:08:57
733000 -- (-3936.013) (-3917.605) [-3931.686] (-3927.217) * (-3938.131) [-3926.317] (-3949.791) (-3937.994) -- 0:08:55
734000 -- [-3920.749] (-3922.237) (-3930.666) (-3933.008) * (-3932.045) (-3947.200) [-3927.135] (-3948.026) -- 0:08:53
735000 -- (-3942.025) [-3922.583] (-3928.932) (-3934.477) * (-3945.318) [-3922.073] (-3925.983) (-3937.316) -- 0:08:51
Average standard deviation of split frequencies: 0.008439
736000 -- (-3946.897) [-3924.296] (-3938.965) (-3933.688) * (-3939.779) [-3919.179] (-3929.774) (-3925.657) -- 0:08:49
737000 -- (-3948.961) (-3934.822) [-3929.195] (-3923.468) * (-3918.362) [-3915.565] (-3927.857) (-3945.029) -- 0:08:47
738000 -- [-3928.919] (-3933.339) (-3940.559) (-3914.954) * (-3937.418) [-3918.877] (-3937.996) (-3919.879) -- 0:08:45
739000 -- (-3944.323) (-3938.545) [-3931.547] (-3930.125) * (-3939.719) (-3915.445) (-3934.569) [-3920.159] -- 0:08:43
740000 -- (-3929.012) [-3923.190] (-3941.757) (-3936.414) * (-3935.742) (-3943.646) [-3907.778] (-3941.643) -- 0:08:41
Average standard deviation of split frequencies: 0.008386
741000 -- [-3928.393] (-3940.299) (-3931.110) (-3932.288) * (-3939.455) [-3916.296] (-3926.229) (-3921.426) -- 0:08:39
742000 -- [-3934.151] (-3930.161) (-3922.030) (-3941.683) * (-3935.262) (-3940.318) [-3922.934] (-3938.622) -- 0:08:37
743000 -- (-3931.639) [-3918.436] (-3926.878) (-3947.298) * (-3931.586) (-3921.632) (-3924.175) [-3917.666] -- 0:08:35
744000 -- [-3930.665] (-3925.830) (-3942.166) (-3932.653) * (-3930.402) (-3929.490) [-3939.573] (-3931.899) -- 0:08:33
745000 -- [-3931.752] (-3934.424) (-3941.833) (-3954.402) * [-3936.388] (-3934.994) (-3934.424) (-3939.213) -- 0:08:31
Average standard deviation of split frequencies: 0.008041
746000 -- [-3921.412] (-3920.755) (-3939.783) (-3935.135) * (-3939.172) (-3932.188) (-3947.410) [-3925.217] -- 0:08:29
747000 -- [-3918.602] (-3938.765) (-3933.294) (-3934.257) * (-3924.970) (-3932.957) (-3945.987) [-3921.981] -- 0:08:27
748000 -- (-3932.411) [-3933.451] (-3938.792) (-3919.811) * (-3958.001) (-3952.040) (-3946.668) [-3918.589] -- 0:08:25
749000 -- (-3930.598) [-3927.288] (-3938.148) (-3924.708) * (-3933.161) (-3939.612) [-3932.238] (-3927.530) -- 0:08:23
750000 -- (-3934.992) [-3923.110] (-3934.872) (-3923.619) * (-3934.167) (-3949.163) (-3930.925) [-3931.178] -- 0:08:21
Average standard deviation of split frequencies: 0.007862
751000 -- (-3935.976) (-3922.672) [-3936.990] (-3937.206) * [-3923.386] (-3933.697) (-3926.653) (-3937.038) -- 0:08:18
752000 -- (-3941.582) (-3931.896) [-3932.932] (-3925.654) * (-3928.939) [-3921.746] (-3929.642) (-3921.419) -- 0:08:16
753000 -- (-3927.575) (-3936.719) [-3925.159] (-3931.343) * (-3933.088) (-3919.291) (-3934.458) [-3919.526] -- 0:08:14
754000 -- (-3925.692) (-3948.252) (-3927.823) [-3933.107] * [-3916.479] (-3917.376) (-3931.405) (-3917.875) -- 0:08:12
755000 -- (-3937.410) (-3944.908) [-3926.626] (-3935.064) * [-3910.482] (-3932.336) (-3929.925) (-3927.823) -- 0:08:10
Average standard deviation of split frequencies: 0.007794
756000 -- (-3944.413) (-3943.669) (-3930.546) [-3921.538] * [-3919.326] (-3934.353) (-3943.712) (-3932.553) -- 0:08:08
757000 -- (-3929.375) (-3941.163) (-3929.296) [-3923.440] * [-3915.115] (-3949.402) (-3945.082) (-3922.189) -- 0:08:06
758000 -- (-3944.301) (-3962.386) [-3923.059] (-3934.121) * (-3924.245) (-3931.688) (-3933.799) [-3915.747] -- 0:08:04
759000 -- (-3938.032) (-3913.970) (-3926.690) [-3921.243] * (-3935.888) [-3925.569] (-3927.515) (-3941.708) -- 0:08:02
760000 -- [-3921.796] (-3921.782) (-3935.560) (-3930.374) * (-3924.727) (-3935.291) [-3915.790] (-3963.352) -- 0:08:00
Average standard deviation of split frequencies: 0.007961
761000 -- [-3913.813] (-3925.202) (-3932.467) (-3936.875) * (-3935.454) [-3923.914] (-3919.730) (-3930.367) -- 0:07:58
762000 -- (-3924.266) [-3920.092] (-3931.521) (-3918.640) * (-3931.809) (-3931.330) (-3927.272) [-3926.764] -- 0:07:56
763000 -- (-3926.722) (-3913.813) (-3931.685) [-3922.271] * (-3925.432) (-3933.441) [-3926.813] (-3939.652) -- 0:07:54
764000 -- (-3933.610) (-3917.016) [-3917.081] (-3937.394) * (-3938.962) (-3936.285) [-3936.546] (-3920.597) -- 0:07:52
765000 -- [-3926.486] (-3939.118) (-3932.722) (-3934.532) * (-3937.656) [-3929.867] (-3925.826) (-3931.358) -- 0:07:50
Average standard deviation of split frequencies: 0.007775
766000 -- (-3934.038) [-3938.261] (-3937.944) (-3933.516) * [-3931.944] (-3925.599) (-3928.825) (-3930.810) -- 0:07:48
767000 -- (-3941.514) (-3930.513) [-3948.929] (-3924.605) * (-3947.917) (-3926.960) (-3927.939) [-3927.573] -- 0:07:46
768000 -- (-3941.785) [-3931.971] (-3941.803) (-3927.408) * (-3939.542) (-3931.261) (-3943.166) [-3933.137] -- 0:07:44
769000 -- (-3932.277) (-3947.422) (-3929.865) [-3926.212] * (-3925.610) (-3939.172) (-3934.871) [-3928.903] -- 0:07:42
770000 -- (-3926.229) (-3942.134) (-3940.686) [-3915.638] * (-3935.210) [-3923.684] (-3929.275) (-3934.760) -- 0:07:41
Average standard deviation of split frequencies: 0.007740
771000 -- (-3933.622) [-3924.418] (-3935.457) (-3937.603) * (-3942.818) [-3919.100] (-3930.387) (-3941.596) -- 0:07:39
772000 -- (-3943.726) (-3942.350) [-3915.520] (-3929.039) * (-3925.456) [-3924.129] (-3930.193) (-3937.963) -- 0:07:37
773000 -- (-3926.532) (-3940.748) (-3935.675) [-3915.539] * (-3929.688) [-3927.649] (-3938.372) (-3942.913) -- 0:07:35
774000 -- (-3925.737) (-3942.042) (-3925.578) [-3911.605] * (-3929.183) (-3924.387) [-3915.334] (-3940.520) -- 0:07:33
775000 -- (-3930.355) (-3933.217) (-3940.565) [-3923.956] * (-3954.374) [-3928.780] (-3935.802) (-3933.802) -- 0:07:31
Average standard deviation of split frequencies: 0.007745
776000 -- (-3929.899) [-3925.993] (-3943.011) (-3935.527) * (-3932.604) (-3925.665) [-3914.056] (-3928.075) -- 0:07:29
777000 -- (-3925.836) (-3930.141) (-3936.611) [-3920.306] * (-3929.599) [-3921.329] (-3928.037) (-3941.450) -- 0:07:27
778000 -- (-3926.313) [-3907.511] (-3924.450) (-3930.114) * [-3917.553] (-3914.266) (-3924.695) (-3941.969) -- 0:07:24
779000 -- [-3912.126] (-3925.355) (-3947.927) (-3932.913) * [-3918.829] (-3934.285) (-3939.107) (-3930.359) -- 0:07:22
780000 -- (-3936.541) (-3939.873) [-3923.647] (-3926.654) * (-3918.967) [-3934.250] (-3922.843) (-3939.200) -- 0:07:20
Average standard deviation of split frequencies: 0.007641
781000 -- [-3923.671] (-3928.872) (-3925.288) (-3932.732) * (-3921.606) (-3936.178) [-3920.947] (-3937.135) -- 0:07:18
782000 -- (-3911.871) [-3918.080] (-3933.884) (-3940.433) * (-3925.043) (-3932.242) (-3918.862) [-3932.502] -- 0:07:16
783000 -- (-3932.132) [-3921.162] (-3928.100) (-3956.742) * (-3943.356) (-3939.519) (-3926.521) [-3933.197] -- 0:07:14
784000 -- (-3926.738) (-3931.151) [-3923.145] (-3921.731) * (-3935.406) (-3936.587) (-3920.546) [-3919.407] -- 0:07:12
785000 -- [-3923.507] (-3931.478) (-3938.792) (-3914.432) * (-3929.775) (-3919.280) [-3914.914] (-3923.155) -- 0:07:10
Average standard deviation of split frequencies: 0.007751
786000 -- [-3921.999] (-3921.012) (-3940.304) (-3916.524) * (-3934.707) (-3918.639) [-3924.489] (-3930.343) -- 0:07:08
787000 -- [-3924.581] (-3946.917) (-3929.782) (-3944.034) * (-3927.959) (-3923.428) [-3912.324] (-3955.035) -- 0:07:06
788000 -- (-3930.213) [-3921.561] (-3924.048) (-3938.422) * (-3946.550) [-3925.565] (-3915.660) (-3923.791) -- 0:07:04
789000 -- [-3924.518] (-3927.894) (-3938.017) (-3930.469) * (-3943.169) (-3924.877) (-3917.965) [-3927.731] -- 0:07:02
790000 -- (-3932.932) (-3937.941) (-3928.337) [-3932.050] * (-3936.482) (-3928.308) [-3920.034] (-3921.686) -- 0:07:00
Average standard deviation of split frequencies: 0.007682
791000 -- (-3925.799) (-3934.888) (-3932.077) [-3911.831] * (-3930.637) [-3933.624] (-3933.547) (-3926.800) -- 0:06:58
792000 -- (-3946.095) [-3924.596] (-3921.756) (-3916.129) * [-3918.943] (-3927.775) (-3959.116) (-3926.260) -- 0:06:56
793000 -- [-3934.220] (-3949.050) (-3943.359) (-3931.849) * (-3938.946) [-3926.693] (-3922.179) (-3921.622) -- 0:06:54
794000 -- (-3936.346) (-3924.884) (-3927.244) [-3921.213] * (-3944.317) [-3927.642] (-3925.883) (-3930.232) -- 0:06:53
795000 -- (-3943.354) [-3934.786] (-3936.636) (-3948.211) * (-3923.945) (-3924.279) (-3935.092) [-3917.855] -- 0:06:51
Average standard deviation of split frequencies: 0.007494
796000 -- (-3940.791) [-3926.240] (-3938.393) (-3940.417) * (-3929.209) [-3930.965] (-3922.373) (-3948.465) -- 0:06:49
797000 -- [-3929.189] (-3917.632) (-3939.768) (-3929.166) * [-3922.028] (-3927.462) (-3939.345) (-3940.273) -- 0:06:47
798000 -- (-3917.295) [-3925.538] (-3934.525) (-3944.410) * (-3921.233) (-3930.887) [-3940.821] (-3922.395) -- 0:06:45
799000 -- (-3937.843) [-3919.620] (-3938.242) (-3940.551) * (-3916.347) [-3931.341] (-3932.681) (-3941.368) -- 0:06:43
800000 -- (-3926.339) (-3918.811) [-3929.882] (-3918.998) * [-3924.737] (-3938.235) (-3938.492) (-3942.787) -- 0:06:40
Average standard deviation of split frequencies: 0.007563
801000 -- (-3945.065) (-3938.769) (-3938.337) [-3917.887] * (-3929.274) [-3926.028] (-3947.756) (-3933.819) -- 0:06:38
802000 -- (-3927.529) (-3929.850) (-3925.548) [-3915.789] * [-3918.341] (-3927.983) (-3929.841) (-3926.086) -- 0:06:36
803000 -- (-3926.730) (-3922.138) [-3916.067] (-3924.578) * [-3929.435] (-3921.207) (-3934.436) (-3937.446) -- 0:06:34
804000 -- (-3925.559) (-3931.227) [-3923.803] (-3921.398) * (-3928.382) (-3928.517) [-3926.751] (-3931.433) -- 0:06:32
805000 -- (-3955.219) [-3940.776] (-3933.382) (-3913.288) * (-3927.331) [-3938.066] (-3935.462) (-3937.457) -- 0:06:30
Average standard deviation of split frequencies: 0.007603
806000 -- [-3929.223] (-3941.341) (-3926.837) (-3941.978) * (-3932.654) [-3909.918] (-3943.029) (-3934.740) -- 0:06:28
807000 -- (-3935.145) (-3942.205) [-3925.766] (-3934.068) * (-3938.230) (-3920.254) (-3924.706) [-3930.902] -- 0:06:26
808000 -- (-3934.915) (-3938.948) [-3929.552] (-3928.389) * [-3925.118] (-3924.385) (-3941.134) (-3957.381) -- 0:06:24
809000 -- [-3922.659] (-3941.531) (-3936.760) (-3919.346) * [-3918.950] (-3928.131) (-3941.268) (-3939.629) -- 0:06:22
810000 -- (-3930.069) (-3923.422) (-3938.808) [-3919.493] * [-3914.413] (-3940.116) (-3937.302) (-3922.006) -- 0:06:20
Average standard deviation of split frequencies: 0.007481
811000 -- (-3922.401) [-3920.920] (-3940.390) (-3912.665) * (-3926.149) (-3949.113) (-3941.027) [-3924.264] -- 0:06:18
812000 -- (-3930.909) (-3932.383) [-3924.985] (-3925.619) * [-3917.423] (-3926.580) (-3949.678) (-3916.297) -- 0:06:16
813000 -- (-3925.239) (-3934.599) (-3929.346) [-3926.382] * (-3924.241) (-3923.162) (-3934.382) [-3911.251] -- 0:06:14
814000 -- [-3931.174] (-3939.231) (-3934.729) (-3922.568) * [-3920.092] (-3940.047) (-3922.506) (-3933.478) -- 0:06:12
815000 -- (-3946.039) (-3924.480) (-3935.148) [-3930.621] * (-3917.618) (-3933.227) [-3937.622] (-3935.723) -- 0:06:10
Average standard deviation of split frequencies: 0.007543
816000 -- (-3955.096) [-3923.670] (-3943.134) (-3930.654) * [-3941.714] (-3925.427) (-3943.614) (-3941.744) -- 0:06:08
817000 -- (-3920.394) [-3918.057] (-3944.657) (-3938.746) * (-3936.564) (-3933.655) [-3912.875] (-3926.545) -- 0:06:06
818000 -- (-3932.794) (-3938.767) (-3931.611) [-3926.398] * [-3914.316] (-3946.592) (-3917.724) (-3931.369) -- 0:06:04
819000 -- (-3955.535) (-3932.239) (-3924.384) [-3918.504] * [-3931.456] (-3928.686) (-3926.882) (-3926.243) -- 0:06:02
820000 -- (-3938.188) (-3934.843) (-3941.639) [-3919.071] * (-3927.653) (-3925.116) (-3916.754) [-3923.569] -- 0:06:00
Average standard deviation of split frequencies: 0.007224
821000 -- (-3947.894) (-3932.308) (-3920.214) [-3926.389] * (-3929.602) [-3929.071] (-3922.196) (-3925.081) -- 0:05:58
822000 -- [-3942.363] (-3931.010) (-3917.366) (-3940.079) * (-3936.702) (-3944.754) [-3923.209] (-3937.043) -- 0:05:56
823000 -- (-3934.667) (-3939.294) (-3928.391) [-3940.233] * (-3929.647) (-3939.920) (-3928.368) [-3927.264] -- 0:05:54
824000 -- [-3911.076] (-3932.788) (-3938.094) (-3924.497) * (-3926.566) (-3931.455) (-3931.561) [-3920.331] -- 0:05:52
825000 -- (-3920.726) (-3938.024) [-3920.209] (-3924.827) * (-3939.380) (-3937.946) [-3926.165] (-3929.908) -- 0:05:50
Average standard deviation of split frequencies: 0.006892
826000 -- (-3920.506) (-3957.696) [-3920.718] (-3924.925) * [-3933.201] (-3952.272) (-3934.177) (-3925.906) -- 0:05:48
827000 -- (-3925.433) [-3920.354] (-3928.529) (-3939.735) * [-3924.645] (-3925.479) (-3930.135) (-3932.574) -- 0:05:46
828000 -- (-3915.278) (-3928.208) (-3938.488) [-3925.667] * (-3933.658) [-3926.364] (-3935.381) (-3936.740) -- 0:05:44
829000 -- [-3917.588] (-3935.457) (-3927.830) (-3931.311) * [-3937.429] (-3924.528) (-3936.183) (-3932.218) -- 0:05:42
830000 -- (-3933.657) (-3933.279) [-3920.267] (-3917.977) * (-3926.172) (-3931.164) (-3938.739) [-3936.589] -- 0:05:40
Average standard deviation of split frequencies: 0.006766
831000 -- [-3917.864] (-3929.457) (-3914.643) (-3933.303) * (-3924.276) [-3920.022] (-3919.932) (-3927.626) -- 0:05:38
832000 -- (-3930.335) (-3922.985) (-3928.100) [-3928.654] * (-3923.302) [-3932.653] (-3918.880) (-3916.315) -- 0:05:36
833000 -- [-3916.313] (-3921.661) (-3927.460) (-3946.425) * [-3921.832] (-3941.669) (-3936.381) (-3933.964) -- 0:05:34
834000 -- (-3922.929) (-3954.703) [-3923.896] (-3928.074) * (-3930.944) (-3917.828) (-3937.192) [-3915.860] -- 0:05:32
835000 -- [-3915.383] (-3936.092) (-3940.260) (-3936.785) * [-3923.694] (-3931.994) (-3943.433) (-3923.219) -- 0:05:30
Average standard deviation of split frequencies: 0.006680
836000 -- (-3929.473) (-3931.032) (-3940.503) [-3922.459] * [-3935.970] (-3942.448) (-3929.261) (-3937.360) -- 0:05:28
837000 -- [-3929.554] (-3935.654) (-3934.395) (-3929.133) * (-3922.323) (-3949.275) [-3930.349] (-3934.997) -- 0:05:26
838000 -- (-3923.966) (-3927.720) [-3922.683] (-3927.167) * (-3942.364) [-3925.634] (-3918.330) (-3932.235) -- 0:05:24
839000 -- (-3924.482) (-3934.508) (-3935.361) [-3933.149] * [-3921.763] (-3932.778) (-3916.774) (-3927.271) -- 0:05:22
840000 -- (-3938.785) (-3926.441) (-3921.911) [-3928.005] * (-3930.050) [-3925.446] (-3931.383) (-3917.959) -- 0:05:20
Average standard deviation of split frequencies: 0.006945
841000 -- (-3927.278) (-3950.100) (-3935.822) [-3921.667] * (-3940.936) (-3937.709) [-3925.276] (-3925.318) -- 0:05:18
842000 -- (-3919.566) (-3921.817) [-3927.628] (-3947.126) * (-3921.017) [-3942.396] (-3948.549) (-3943.878) -- 0:05:16
843000 -- (-3928.047) (-3928.659) [-3927.321] (-3931.872) * [-3921.529] (-3936.790) (-3933.331) (-3932.200) -- 0:05:14
844000 -- (-3926.822) [-3921.339] (-3936.990) (-3941.217) * [-3934.030] (-3932.069) (-3923.354) (-3946.577) -- 0:05:12
845000 -- (-3924.542) [-3919.460] (-3927.541) (-3931.048) * (-3934.714) [-3923.012] (-3929.720) (-3934.099) -- 0:05:10
Average standard deviation of split frequencies: 0.007008
846000 -- (-3935.124) [-3930.100] (-3934.555) (-3936.151) * [-3915.101] (-3939.118) (-3931.076) (-3932.748) -- 0:05:08
847000 -- [-3915.253] (-3923.188) (-3944.754) (-3928.483) * [-3926.085] (-3947.791) (-3942.803) (-3938.766) -- 0:05:06
848000 -- [-3926.004] (-3934.344) (-3932.784) (-3932.410) * [-3932.705] (-3926.822) (-3922.164) (-3933.836) -- 0:05:04
849000 -- [-3931.497] (-3940.123) (-3937.521) (-3921.981) * (-3933.511) (-3938.695) (-3931.492) [-3928.849] -- 0:05:02
850000 -- (-3929.319) [-3922.455] (-3949.030) (-3930.413) * (-3942.384) (-3935.766) [-3923.494] (-3933.879) -- 0:05:00
Average standard deviation of split frequencies: 0.007034
851000 -- (-3924.295) (-3934.808) (-3937.672) [-3924.751] * (-3941.320) [-3924.712] (-3922.893) (-3929.052) -- 0:04:58
852000 -- (-3941.487) (-3923.988) (-3936.905) [-3933.017] * [-3927.073] (-3927.314) (-3945.757) (-3933.573) -- 0:04:56
853000 -- (-3939.805) (-3931.250) (-3931.089) [-3920.243] * [-3922.800] (-3927.956) (-3933.706) (-3921.226) -- 0:04:54
854000 -- (-3934.522) (-3934.520) [-3926.046] (-3920.597) * (-3922.757) (-3923.499) (-3919.795) [-3922.415] -- 0:04:52
855000 -- (-3932.055) (-3932.692) (-3926.457) [-3923.078] * (-3938.460) [-3930.500] (-3938.534) (-3928.256) -- 0:04:50
Average standard deviation of split frequencies: 0.006841
856000 -- [-3917.561] (-3909.542) (-3942.042) (-3923.655) * (-3936.971) (-3936.091) (-3918.771) [-3927.047] -- 0:04:48
857000 -- [-3925.550] (-3924.530) (-3938.129) (-3939.773) * (-3940.173) (-3918.492) (-3924.289) [-3921.528] -- 0:04:46
858000 -- [-3923.461] (-3931.510) (-3936.169) (-3928.862) * (-3939.503) (-3931.006) [-3918.142] (-3936.178) -- 0:04:44
859000 -- [-3919.880] (-3949.360) (-3938.801) (-3941.974) * (-3929.910) (-3944.387) [-3917.402] (-3937.332) -- 0:04:42
860000 -- [-3914.985] (-3925.496) (-3929.902) (-3929.824) * (-3925.865) (-3929.775) [-3918.178] (-3926.785) -- 0:04:40
Average standard deviation of split frequencies: 0.006762
861000 -- [-3924.853] (-3924.958) (-3938.644) (-3924.319) * (-3932.783) (-3923.413) (-3928.432) [-3924.599] -- 0:04:38
862000 -- (-3935.759) (-3931.700) (-3946.829) [-3919.987] * [-3924.458] (-3941.736) (-3937.109) (-3909.356) -- 0:04:36
863000 -- (-3933.993) (-3934.589) (-3938.682) [-3927.153] * (-3927.709) (-3943.436) (-3945.552) [-3914.754] -- 0:04:34
864000 -- [-3925.553] (-3921.350) (-3945.131) (-3934.028) * (-3929.932) (-3926.361) (-3930.922) [-3929.683] -- 0:04:32
865000 -- (-3933.609) [-3915.877] (-3945.136) (-3924.738) * (-3924.076) [-3928.987] (-3921.660) (-3909.442) -- 0:04:30
Average standard deviation of split frequencies: 0.006994
866000 -- (-3938.358) (-3924.273) (-3950.257) [-3930.083] * (-3925.682) (-3943.256) (-3920.644) [-3918.304] -- 0:04:28
867000 -- (-3948.166) [-3922.244] (-3933.471) (-3923.752) * (-3929.763) (-3938.675) (-3932.578) [-3921.376] -- 0:04:26
868000 -- (-3916.075) (-3943.865) (-3941.267) [-3923.974] * (-3954.744) (-3937.490) (-3937.343) [-3916.351] -- 0:04:24
869000 -- (-3913.546) (-3930.873) [-3920.804] (-3925.421) * (-3930.838) (-3927.898) (-3925.046) [-3919.758] -- 0:04:22
870000 -- [-3928.772] (-3928.539) (-3932.716) (-3950.651) * [-3939.298] (-3930.785) (-3918.838) (-3919.639) -- 0:04:20
Average standard deviation of split frequencies: 0.006926
871000 -- (-3923.601) [-3924.429] (-3926.466) (-3942.427) * (-3940.105) (-3930.693) (-3918.710) [-3920.054] -- 0:04:18
872000 -- (-3925.348) [-3914.637] (-3931.563) (-3935.378) * (-3948.175) (-3926.821) [-3929.885] (-3924.271) -- 0:04:16
873000 -- (-3916.178) [-3917.525] (-3935.623) (-3936.353) * (-3935.280) (-3919.889) [-3910.627] (-3940.323) -- 0:04:14
874000 -- (-3934.354) (-3947.341) (-3925.022) [-3929.623] * (-3933.840) (-3926.354) [-3922.246] (-3922.404) -- 0:04:12
875000 -- (-3949.603) (-3941.465) [-3932.042] (-3938.749) * (-3940.051) (-3929.117) (-3933.975) [-3924.759] -- 0:04:10
Average standard deviation of split frequencies: 0.006965
876000 -- (-3958.087) [-3931.245] (-3934.581) (-3926.819) * (-3937.737) (-3943.920) [-3928.392] (-3922.334) -- 0:04:08
877000 -- (-3932.945) (-3934.536) (-3933.375) [-3921.498] * [-3922.905] (-3922.760) (-3938.136) (-3920.137) -- 0:04:06
878000 -- (-3929.941) [-3917.757] (-3926.621) (-3928.092) * (-3939.166) [-3928.142] (-3929.336) (-3920.858) -- 0:04:04
879000 -- [-3924.256] (-3938.569) (-3927.386) (-3924.589) * (-3949.764) [-3927.611] (-3948.558) (-3915.295) -- 0:04:02
880000 -- (-3937.023) [-3922.043] (-3920.798) (-3954.164) * [-3914.303] (-3921.519) (-3927.962) (-3930.199) -- 0:04:00
Average standard deviation of split frequencies: 0.006666
881000 -- (-3935.165) (-3924.683) [-3916.712] (-3936.583) * (-3924.727) [-3916.893] (-3931.936) (-3936.881) -- 0:03:58
882000 -- (-3934.507) (-3925.504) [-3921.025] (-3941.719) * (-3931.080) [-3922.551] (-3929.233) (-3923.787) -- 0:03:56
883000 -- [-3928.225] (-3933.011) (-3932.910) (-3916.820) * (-3937.149) (-3932.638) (-3939.530) [-3919.406] -- 0:03:54
884000 -- (-3938.410) [-3935.537] (-3941.570) (-3925.250) * (-3935.291) (-3937.256) [-3919.509] (-3922.633) -- 0:03:52
885000 -- (-3928.600) (-3932.757) (-3934.129) [-3923.738] * (-3939.338) (-3924.281) (-3926.576) [-3919.853] -- 0:03:50
Average standard deviation of split frequencies: 0.006545
886000 -- (-3928.335) (-3918.852) (-3923.283) [-3915.387] * (-3930.542) (-3935.596) (-3920.484) [-3924.806] -- 0:03:48
887000 -- (-3940.463) [-3931.495] (-3933.344) (-3917.667) * [-3923.469] (-3946.261) (-3935.070) (-3923.860) -- 0:03:46
888000 -- [-3931.668] (-3916.271) (-3929.072) (-3919.955) * (-3928.112) (-3929.714) [-3929.056] (-3936.540) -- 0:03:44
889000 -- (-3931.192) (-3930.614) [-3929.503] (-3936.843) * (-3941.129) (-3944.180) (-3926.282) [-3918.338] -- 0:03:42
890000 -- (-3924.866) (-3921.401) (-3940.915) [-3924.068] * (-3946.383) [-3916.124] (-3921.800) (-3934.017) -- 0:03:40
Average standard deviation of split frequencies: 0.006280
891000 -- (-3930.524) (-3934.165) (-3933.168) [-3917.162] * (-3943.803) [-3920.592] (-3942.621) (-3923.089) -- 0:03:38
892000 -- [-3922.962] (-3919.926) (-3929.390) (-3951.886) * [-3944.552] (-3917.038) (-3937.219) (-3932.223) -- 0:03:36
893000 -- [-3915.741] (-3921.347) (-3920.506) (-3933.441) * (-3933.344) [-3918.952] (-3955.912) (-3925.769) -- 0:03:34
894000 -- (-3930.161) [-3928.153] (-3919.100) (-3947.977) * [-3919.304] (-3937.931) (-3922.605) (-3933.188) -- 0:03:32
895000 -- [-3921.236] (-3933.481) (-3944.434) (-3941.081) * (-3942.558) (-3930.835) [-3910.748] (-3920.968) -- 0:03:30
Average standard deviation of split frequencies: 0.006162
896000 -- (-3935.866) (-3935.381) [-3920.296] (-3922.008) * (-3949.973) (-3923.046) [-3918.883] (-3916.614) -- 0:03:28
897000 -- (-3942.283) [-3922.112] (-3921.914) (-3943.021) * [-3937.201] (-3934.515) (-3920.481) (-3925.692) -- 0:03:26
898000 -- (-3930.005) (-3920.879) [-3927.400] (-3955.474) * (-3952.512) (-3937.321) [-3921.531] (-3922.607) -- 0:03:24
899000 -- [-3935.413] (-3931.599) (-3928.466) (-3929.811) * [-3926.956] (-3928.597) (-3946.122) (-3928.192) -- 0:03:22
900000 -- (-3945.903) (-3914.618) [-3920.476] (-3939.891) * [-3917.767] (-3927.279) (-3931.397) (-3925.525) -- 0:03:20
Average standard deviation of split frequencies: 0.006049
901000 -- [-3926.264] (-3926.796) (-3928.141) (-3928.242) * (-3917.856) (-3925.054) (-3933.224) [-3920.295] -- 0:03:18
902000 -- (-3940.438) (-3924.795) [-3918.445] (-3919.379) * (-3921.891) (-3956.121) (-3921.151) [-3919.261] -- 0:03:16
903000 -- (-3931.605) (-3935.857) [-3915.895] (-3925.665) * (-3926.636) [-3936.338] (-3941.009) (-3945.705) -- 0:03:14
904000 -- [-3926.983] (-3953.238) (-3924.168) (-3933.761) * [-3922.038] (-3927.888) (-3920.748) (-3933.377) -- 0:03:12
905000 -- (-3935.438) (-3918.643) [-3935.510] (-3947.010) * (-3931.109) (-3928.451) (-3925.801) [-3934.580] -- 0:03:10
Average standard deviation of split frequencies: 0.006352
906000 -- (-3937.418) (-3929.948) [-3918.966] (-3939.825) * (-3930.709) (-3923.479) (-3931.746) [-3925.806] -- 0:03:08
907000 -- (-3930.087) [-3942.624] (-3929.256) (-3947.238) * (-3946.614) [-3930.463] (-3918.381) (-3944.167) -- 0:03:06
908000 -- (-3944.601) [-3916.900] (-3935.982) (-3932.736) * (-3939.171) [-3918.711] (-3926.332) (-3932.093) -- 0:03:04
909000 -- (-3944.487) [-3922.540] (-3926.012) (-3927.614) * [-3919.340] (-3938.959) (-3925.398) (-3928.265) -- 0:03:02
910000 -- (-3932.258) (-3931.889) [-3931.129] (-3922.041) * (-3921.723) (-3935.014) (-3927.198) [-3926.124] -- 0:03:00
Average standard deviation of split frequencies: 0.006122
911000 -- (-3939.888) (-3933.480) [-3942.423] (-3926.404) * (-3938.601) (-3925.192) (-3927.211) [-3922.876] -- 0:02:58
912000 -- [-3931.770] (-3928.215) (-3950.598) (-3925.848) * [-3925.524] (-3929.209) (-3930.593) (-3958.333) -- 0:02:56
913000 -- (-3945.713) (-3920.195) [-3927.746] (-3932.464) * (-3933.097) [-3925.949] (-3939.707) (-3956.158) -- 0:02:54
914000 -- (-3941.137) [-3914.543] (-3931.539) (-3928.812) * (-3923.706) (-3931.441) (-3936.156) [-3927.791] -- 0:02:52
915000 -- (-3931.972) [-3920.346] (-3949.829) (-3935.866) * (-3941.180) (-3939.220) [-3915.666] (-3946.581) -- 0:02:50
Average standard deviation of split frequencies: 0.006037
916000 -- (-3931.459) (-3929.609) (-3939.934) [-3930.008] * (-3937.681) (-3954.868) [-3918.355] (-3933.553) -- 0:02:48
917000 -- (-3941.630) (-3917.889) (-3937.085) [-3924.698] * (-3933.685) (-3942.519) (-3935.635) [-3922.360] -- 0:02:46
918000 -- (-3937.490) [-3922.422] (-3933.927) (-3935.869) * (-3924.624) (-3925.458) [-3932.935] (-3917.686) -- 0:02:44
919000 -- (-3921.311) [-3917.322] (-3935.533) (-3929.573) * (-3938.730) (-3927.311) (-3928.468) [-3922.084] -- 0:02:42
920000 -- (-3920.574) (-3927.932) (-3935.981) [-3931.415] * (-3927.948) (-3926.325) (-3924.057) [-3932.424] -- 0:02:40
Average standard deviation of split frequencies: 0.005918
921000 -- (-3934.047) (-3936.445) [-3913.878] (-3937.833) * (-3932.233) [-3923.671] (-3934.645) (-3929.685) -- 0:02:38
922000 -- (-3936.610) (-3937.431) [-3923.365] (-3922.472) * [-3927.162] (-3930.922) (-3932.268) (-3922.771) -- 0:02:36
923000 -- (-3941.387) (-3930.971) (-3935.842) [-3923.102] * [-3924.502] (-3925.016) (-3933.814) (-3923.767) -- 0:02:34
924000 -- (-3930.679) [-3927.360] (-3942.756) (-3924.447) * (-3936.892) [-3919.474] (-3935.009) (-3928.585) -- 0:02:32
925000 -- (-3927.010) [-3923.072] (-3939.022) (-3920.673) * (-3933.546) (-3943.684) (-3933.261) [-3928.436] -- 0:02:30
Average standard deviation of split frequencies: 0.005955
926000 -- (-3938.918) [-3938.907] (-3927.203) (-3945.766) * (-3939.824) (-3934.016) (-3930.813) [-3939.825] -- 0:02:28
927000 -- (-3928.720) (-3930.360) (-3938.790) [-3920.111] * (-3929.688) (-3930.882) [-3926.431] (-3936.536) -- 0:02:26
928000 -- [-3921.273] (-3921.509) (-3943.293) (-3929.150) * (-3928.578) [-3923.426] (-3937.066) (-3943.955) -- 0:02:24
929000 -- (-3933.759) (-3934.694) [-3931.546] (-3919.399) * (-3927.944) (-3918.550) [-3935.006] (-3946.306) -- 0:02:22
930000 -- [-3926.238] (-3918.550) (-3921.824) (-3940.400) * (-3930.545) [-3920.053] (-3929.207) (-3926.634) -- 0:02:20
Average standard deviation of split frequencies: 0.005897
931000 -- [-3919.182] (-3921.166) (-3926.386) (-3947.350) * (-3936.398) (-3943.765) [-3918.128] (-3929.507) -- 0:02:18
932000 -- (-3926.061) (-3938.161) (-3939.093) [-3933.125] * [-3923.166] (-3931.828) (-3931.231) (-3931.306) -- 0:02:16
933000 -- (-3916.634) (-3928.241) (-3924.513) [-3928.538] * (-3931.789) [-3932.963] (-3929.376) (-3934.841) -- 0:02:14
934000 -- (-3916.413) (-3930.980) [-3920.833] (-3941.846) * (-3936.039) (-3937.571) [-3926.732] (-3933.564) -- 0:02:12
935000 -- [-3931.038] (-3937.619) (-3928.632) (-3926.455) * [-3924.654] (-3918.981) (-3927.320) (-3935.494) -- 0:02:10
Average standard deviation of split frequencies: 0.005854
936000 -- (-3925.205) [-3925.895] (-3950.531) (-3921.832) * (-3940.199) [-3931.028] (-3944.116) (-3935.987) -- 0:02:08
937000 -- [-3921.017] (-3927.082) (-3972.873) (-3928.168) * (-3924.956) [-3931.207] (-3939.449) (-3909.183) -- 0:02:06
938000 -- [-3928.050] (-3935.476) (-3923.903) (-3926.800) * (-3935.151) (-3922.002) (-3930.983) [-3906.605] -- 0:02:04
939000 -- (-3919.039) (-3938.104) [-3923.610] (-3928.020) * (-3946.515) (-3926.372) [-3933.705] (-3920.207) -- 0:02:02
940000 -- (-3946.938) (-3939.355) (-3928.255) [-3924.072] * [-3925.792] (-3937.088) (-3931.233) (-3926.686) -- 0:02:00
Average standard deviation of split frequencies: 0.006099
941000 -- [-3929.348] (-3924.707) (-3933.461) (-3943.451) * (-3942.984) (-3928.812) [-3935.727] (-3937.328) -- 0:01:58
942000 -- (-3927.129) [-3926.801] (-3944.013) (-3945.145) * (-3926.827) (-3943.932) (-3929.426) [-3919.185] -- 0:01:56
943000 -- (-3931.752) (-3928.565) [-3928.498] (-3926.830) * (-3932.044) (-3928.161) [-3934.472] (-3947.591) -- 0:01:54
944000 -- (-3932.401) (-3944.635) (-3925.670) [-3917.474] * (-3948.525) [-3940.975] (-3924.456) (-3935.822) -- 0:01:52
945000 -- (-3939.588) (-3934.643) (-3919.144) [-3927.401] * [-3929.786] (-3930.960) (-3930.698) (-3924.374) -- 0:01:50
Average standard deviation of split frequencies: 0.005923
946000 -- (-3935.564) (-3923.169) [-3927.017] (-3940.809) * [-3926.416] (-3934.915) (-3935.435) (-3937.132) -- 0:01:48
947000 -- (-3936.374) [-3928.884] (-3939.183) (-3924.754) * (-3945.519) [-3933.233] (-3934.853) (-3940.065) -- 0:01:46
948000 -- (-3930.907) (-3933.669) (-3928.296) [-3924.678] * (-3935.495) (-3932.071) (-3938.932) [-3913.774] -- 0:01:44
949000 -- [-3935.798] (-3936.181) (-3954.256) (-3925.366) * (-3930.110) (-3938.334) [-3933.559] (-3943.469) -- 0:01:42
950000 -- (-3929.789) (-3934.238) [-3934.596] (-3936.801) * (-3948.275) (-3914.008) (-3948.233) [-3935.896] -- 0:01:40
Average standard deviation of split frequencies: 0.005960
951000 -- (-3925.687) (-3932.004) [-3929.435] (-3962.355) * [-3924.401] (-3932.175) (-3926.926) (-3939.369) -- 0:01:38
952000 -- (-3929.095) [-3919.237] (-3926.128) (-3921.115) * (-3931.402) (-3926.296) (-3935.396) [-3919.729] -- 0:01:36
953000 -- (-3930.593) (-3938.233) (-3918.654) [-3920.692] * (-3939.941) (-3931.003) (-3925.814) [-3919.714] -- 0:01:34
954000 -- (-3929.868) (-3939.385) [-3926.478] (-3928.628) * (-3929.095) [-3916.458] (-3921.414) (-3932.878) -- 0:01:32
955000 -- (-3937.107) (-3940.886) [-3934.921] (-3934.767) * [-3927.151] (-3929.922) (-3925.413) (-3935.469) -- 0:01:30
Average standard deviation of split frequencies: 0.006057
956000 -- (-3946.561) [-3923.244] (-3928.668) (-3955.767) * (-3936.035) [-3918.469] (-3921.925) (-3950.099) -- 0:01:28
957000 -- [-3928.944] (-3928.777) (-3923.601) (-3936.701) * (-3934.483) (-3930.559) [-3922.078] (-3929.650) -- 0:01:26
958000 -- [-3919.681] (-3949.002) (-3924.624) (-3942.074) * (-3941.353) (-3936.720) [-3914.854] (-3927.152) -- 0:01:24
959000 -- [-3921.782] (-3939.629) (-3920.324) (-3933.200) * (-3928.027) [-3922.289] (-3941.977) (-3929.523) -- 0:01:22
960000 -- (-3939.383) [-3939.052] (-3925.374) (-3942.440) * [-3926.987] (-3927.086) (-3939.806) (-3934.603) -- 0:01:20
Average standard deviation of split frequencies: 0.006250
961000 -- (-3948.098) [-3918.441] (-3949.474) (-3938.528) * [-3926.257] (-3938.060) (-3933.107) (-3933.004) -- 0:01:18
962000 -- (-3952.541) (-3939.530) [-3934.883] (-3932.949) * (-3920.039) (-3942.022) [-3923.799] (-3937.110) -- 0:01:16
963000 -- (-3936.848) (-3931.554) [-3922.909] (-3921.637) * (-3916.688) [-3919.720] (-3929.556) (-3928.762) -- 0:01:14
964000 -- (-3925.891) (-3935.058) [-3924.891] (-3925.806) * (-3942.882) (-3928.006) (-3947.943) [-3915.497] -- 0:01:12
965000 -- (-3911.529) [-3930.295] (-3936.501) (-3926.042) * [-3931.641] (-3933.292) (-3939.920) (-3931.158) -- 0:01:10
Average standard deviation of split frequencies: 0.006390
966000 -- (-3929.520) (-3931.307) (-3929.240) [-3919.093] * (-3929.719) (-3936.514) [-3929.772] (-3931.428) -- 0:01:08
967000 -- (-3936.709) [-3923.204] (-3929.434) (-3930.106) * (-3924.079) (-3914.528) (-3930.041) [-3927.945] -- 0:01:06
968000 -- [-3933.197] (-3947.292) (-3928.785) (-3927.825) * (-3910.159) [-3918.744] (-3936.549) (-3953.850) -- 0:01:04
969000 -- (-3935.502) [-3923.889] (-3935.603) (-3933.785) * (-3921.227) (-3944.499) [-3933.972] (-3929.663) -- 0:01:02
970000 -- [-3909.492] (-3928.998) (-3939.831) (-3949.016) * [-3929.819] (-3937.952) (-3927.868) (-3939.153) -- 0:01:00
Average standard deviation of split frequencies: 0.006433
971000 -- (-3930.775) (-3937.473) (-3920.342) [-3921.617] * (-3932.828) (-3914.273) [-3916.323] (-3930.029) -- 0:00:58
972000 -- [-3917.500] (-3943.574) (-3930.457) (-3925.324) * (-3926.581) [-3927.535] (-3923.165) (-3940.752) -- 0:00:56
973000 -- (-3926.895) (-3949.222) [-3927.570] (-3932.072) * (-3915.941) [-3923.887] (-3942.043) (-3931.714) -- 0:00:54
974000 -- [-3927.140] (-3931.159) (-3915.999) (-3932.545) * (-3923.206) (-3949.392) [-3924.363] (-3924.719) -- 0:00:52
975000 -- (-3940.284) (-3928.638) (-3915.724) [-3915.880] * (-3928.818) (-3932.636) (-3926.888) [-3931.954] -- 0:00:50
Average standard deviation of split frequencies: 0.006598
976000 -- (-3940.402) (-3916.764) [-3916.253] (-3919.332) * [-3921.803] (-3932.184) (-3929.348) (-3929.588) -- 0:00:48
977000 -- [-3925.117] (-3933.509) (-3928.950) (-3939.845) * (-3929.440) [-3922.161] (-3929.539) (-3937.554) -- 0:00:46
978000 -- (-3940.923) (-3934.357) [-3917.731] (-3933.009) * [-3929.844] (-3922.859) (-3918.586) (-3932.984) -- 0:00:44
979000 -- (-3937.261) [-3925.532] (-3931.087) (-3941.719) * (-3941.811) (-3934.100) [-3930.100] (-3934.226) -- 0:00:42
980000 -- (-3934.925) [-3921.506] (-3925.557) (-3921.078) * (-3923.823) (-3937.176) (-3917.769) [-3920.574] -- 0:00:40
Average standard deviation of split frequencies: 0.006721
981000 -- (-3936.462) (-3928.388) (-3917.362) [-3930.894] * [-3923.527] (-3928.848) (-3931.736) (-3935.283) -- 0:00:38
982000 -- [-3929.097] (-3928.791) (-3941.036) (-3926.601) * (-3935.355) [-3925.968] (-3931.717) (-3943.079) -- 0:00:36
983000 -- [-3929.807] (-3928.083) (-3937.268) (-3932.923) * (-3928.855) [-3913.694] (-3928.050) (-3940.876) -- 0:00:34
984000 -- [-3929.014] (-3930.348) (-3946.563) (-3927.163) * (-3939.843) (-3912.830) [-3913.313] (-3930.470) -- 0:00:32
985000 -- (-3946.118) (-3939.627) (-3933.836) [-3929.424] * (-3937.526) [-3928.708] (-3928.779) (-3924.113) -- 0:00:30
Average standard deviation of split frequencies: 0.006766
986000 -- (-3950.683) [-3923.966] (-3917.701) (-3942.988) * (-3937.444) (-3935.278) [-3936.715] (-3943.414) -- 0:00:28
987000 -- (-3931.474) [-3911.079] (-3922.260) (-3936.028) * (-3932.526) (-3929.758) [-3916.214] (-3940.827) -- 0:00:26
988000 -- [-3927.691] (-3911.260) (-3934.416) (-3930.177) * (-3925.546) (-3945.924) [-3928.266] (-3932.618) -- 0:00:24
989000 -- (-3946.724) [-3922.993] (-3924.457) (-3948.764) * (-3940.807) (-3932.624) [-3922.712] (-3930.170) -- 0:00:22
990000 -- (-3919.515) [-3928.470] (-3922.126) (-3923.812) * (-3950.264) (-3932.493) (-3923.537) [-3920.133] -- 0:00:20
Average standard deviation of split frequencies: 0.006985
991000 -- (-3933.785) (-3930.051) [-3929.917] (-3944.444) * (-3931.676) (-3930.576) [-3928.279] (-3945.712) -- 0:00:18
992000 -- [-3927.683] (-3921.178) (-3951.611) (-3949.843) * (-3933.850) (-3946.975) (-3936.523) [-3925.654] -- 0:00:16
993000 -- (-3938.902) (-3933.663) (-3953.291) [-3921.849] * (-3927.924) (-3962.806) [-3928.098] (-3933.933) -- 0:00:14
994000 -- (-3942.725) (-3948.180) (-3931.997) [-3913.265] * (-3928.307) (-3938.509) [-3918.195] (-3929.582) -- 0:00:12
995000 -- [-3927.052] (-3942.647) (-3929.046) (-3912.703) * (-3935.177) [-3917.663] (-3921.637) (-3946.807) -- 0:00:10
Average standard deviation of split frequencies: 0.006707
996000 -- (-3930.938) [-3928.824] (-3940.659) (-3949.494) * (-3943.464) (-3916.371) [-3924.325] (-3931.804) -- 0:00:08
997000 -- (-3909.818) [-3917.988] (-3939.910) (-3964.947) * (-3933.594) (-3931.445) [-3926.557] (-3915.818) -- 0:00:06
998000 -- (-3925.754) (-3934.763) (-3935.792) [-3923.834] * (-3921.249) [-3916.334] (-3944.590) (-3951.560) -- 0:00:04
999000 -- [-3921.638] (-3939.744) (-3933.709) (-3930.357) * (-3923.974) [-3924.497] (-3943.728) (-3931.634) -- 0:00:02
1000000 -- [-3931.850] (-3926.447) (-3936.916) (-3926.313) * (-3930.164) [-3918.089] (-3933.949) (-3935.391) -- 0:00:00
Average standard deviation of split frequencies: 0.006693
Analysis completed in 33 mins 25 seconds
Analysis used 2002.99 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -3901.57
Likelihood of best state for "cold" chain of run 2 was -3903.72
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
32.5 % ( 22 %) Dirichlet(Revmat{all})
52.0 % ( 37 %) Slider(Revmat{all})
24.0 % ( 25 %) Dirichlet(Pi{all})
26.3 % ( 21 %) Slider(Pi{all})
28.3 % ( 19 %) Multiplier(Alpha{1,2})
42.8 % ( 31 %) Multiplier(Alpha{3})
46.2 % ( 29 %) Slider(Pinvar{all})
27.0 % ( 42 %) ExtSPR(Tau{all},V{all})
19.0 % ( 12 %) ExtTBR(Tau{all},V{all})
28.9 % ( 27 %) NNI(Tau{all},V{all})
32.2 % ( 38 %) ParsSPR(Tau{all},V{all})
26.7 % ( 25 %) Multiplier(V{all})
45.7 % ( 46 %) Nodeslider(V{all})
25.0 % ( 27 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
31.7 % ( 29 %) Dirichlet(Revmat{all})
51.0 % ( 32 %) Slider(Revmat{all})
24.1 % ( 32 %) Dirichlet(Pi{all})
26.3 % ( 33 %) Slider(Pi{all})
28.6 % ( 29 %) Multiplier(Alpha{1,2})
42.1 % ( 26 %) Multiplier(Alpha{3})
46.7 % ( 25 %) Slider(Pinvar{all})
26.7 % ( 21 %) ExtSPR(Tau{all},V{all})
19.1 % ( 18 %) ExtTBR(Tau{all},V{all})
28.7 % ( 30 %) NNI(Tau{all},V{all})
32.2 % ( 30 %) ParsSPR(Tau{all},V{all})
26.7 % ( 24 %) Multiplier(V{all})
45.7 % ( 43 %) Nodeslider(V{all})
25.0 % ( 22 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.60 0.32 0.14
2 | 167270 0.63 0.35
3 | 167006 166595 0.65
4 | 166547 166852 165730
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.61 0.31 0.14
2 | 166174 0.62 0.34
3 | 166601 166542 0.65
4 | 166984 167032 166667
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -3921.25
| 2 2 1 |
| 2 2 1 |
|1 2 1 2 |
| * * 21 *22 1 1 2 2 2 2|
| 1 * 21 2 2 2 1 2 |
| 1 1 1 2 1 2 1 2122 1 |
| 1 1 2 2 * 1 1 * |
| 1 22 1 1 1 2 2 222 11 |
| 1 *1 1 121 1 1 2 1 1 1|
|2 2 2 2 1 1 1 * |
| 1 2 1 1 1 2 1 |
| 22 2 1 2 2 2 2 1 2 21 |
| 12 |
| 1 2 1 |
| 1 2 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -3927.83
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -3912.93 -3943.66
2 -3912.49 -3940.39
--------------------------------------
TOTAL -3912.68 -3943.01
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.345104 0.011613 1.145441 1.564780 1.338044 932.30 1121.70 1.000
r(A<->C){all} 0.099136 0.000342 0.064149 0.135875 0.098077 694.89 847.81 1.000
r(A<->G){all} 0.266771 0.000812 0.214946 0.324433 0.266261 542.94 625.13 1.000
r(A<->T){all} 0.098559 0.000197 0.072518 0.126834 0.097827 784.19 802.34 1.000
r(C<->G){all} 0.065230 0.000298 0.034851 0.101220 0.063768 692.86 755.69 1.000
r(C<->T){all} 0.412590 0.001024 0.350835 0.477594 0.412553 683.28 702.99 1.000
r(G<->T){all} 0.057714 0.000146 0.034008 0.081254 0.057307 885.36 903.57 1.000
pi(A){all} 0.281318 0.000197 0.254128 0.307721 0.281212 873.84 888.85 1.000
pi(C){all} 0.181027 0.000135 0.159743 0.205800 0.180691 759.56 809.47 1.000
pi(G){all} 0.213200 0.000169 0.186706 0.236844 0.213186 835.31 988.44 1.000
pi(T){all} 0.324455 0.000203 0.297187 0.351850 0.323977 959.16 978.77 1.000
alpha{1,2} 0.228248 0.001116 0.166583 0.292692 0.224771 1081.73 1196.46 1.000
alpha{3} 2.187992 0.521467 0.987191 3.555824 2.071921 1262.85 1381.93 1.000
pinvar{all} 0.301408 0.002730 0.196323 0.397292 0.304387 991.01 1051.83 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C67
2 -- C66
3 -- C11
4 -- C14
5 -- C13
6 -- C16
7 -- C19
8 -- C20
9 -- C78
10 -- C22
11 -- C58
12 -- C30
13 -- C60
14 -- C1
15 -- C21
16 -- C12
17 -- C61
18 -- C36
19 -- C99
20 -- C72
21 -- C38
22 -- C81
23 -- C27
24 -- C100
25 -- C32
26 -- C88
27 -- C2
28 -- C5
29 -- C89
30 -- C26
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
------------------------------------
1 -- .*****************************
2 -- .*............................
3 -- ..*...........................
4 -- ...*..........................
5 -- ....*.........................
6 -- .....*........................
7 -- ......*.......................
8 -- .......*......................
9 -- ........*.....................
10 -- .........*....................
11 -- ..........*...................
12 -- ...........*..................
13 -- ............*.................
14 -- .............*................
15 -- ..............*...............
16 -- ...............*..............
17 -- ................*.............
18 -- .................*............
19 -- ..................*...........
20 -- ...................*..........
21 -- ....................*.........
22 -- .....................*........
23 -- ......................*.......
24 -- .......................*......
25 -- ........................*.....
26 -- .........................*....
27 -- ..........................*...
28 -- ...........................*..
29 -- ............................*.
30 -- .............................*
31 -- ..*...****.*.***.....**.**..**
32 -- ..*...****.*.***..*..**.**..**
33 -- .....*....................*...
34 -- .....................*...*..*.
35 -- ...*......*......*.....*......
36 -- ..*..........*........*.*....*
37 -- ..**********.***.**.**********
38 -- ..*.******.*.***..*.***.******
39 -- ..*...****.*.***..*..**.**.***
40 -- ......**.*....*...............
41 -- ...........*...*..............
42 -- ........*............*...*..*.
43 -- ..*.*.****.*.***..*.***.**.***
44 -- .........*....*...............
45 -- ..........*......*............
46 -- .***************.*************
47 -- .***********.***.**.**********
48 -- ........*..*...*.....*...*..*.
49 -- ....*...............*.........
50 -- ..*...**.*...**.......*.*....*
51 -- ......****.*..**.....*...*..*.
52 -- ......**......................
53 -- .........................*..*.
54 -- .....................*......*.
55 -- ...*...................*......
56 -- ..........*......*.....*......
57 -- ...*......*......*............
58 -- ............*......*..........
59 -- ..*.*.****.*.***..*..**.**.***
60 -- .***********.***.*************
61 -- ......*..*....*...............
62 -- .***************.**.**********
63 -- .......*.*....*...............
64 -- .....................*...*....
65 -- ..*...****...**......**.**..**
66 -- ..*..........*........*.*.....
67 -- ..*...****.*.***..*.***.**.***
68 -- ..*.....................*.....
69 -- .............*........*.......
70 -- ..*...................*.......
71 -- ..*..........*........*......*
72 -- ..*..........*..........*....*
73 -- ......................*.*.....
74 -- ..*..........*................
75 -- .............*...............*
76 -- .............*........*.*....*
77 -- ..*..........................*
78 -- ..*...................*.*....*
79 -- .............*..........*.....
80 -- ......................*......*
81 -- ........................*....*
82 -- ..*..........*........*.......
83 -- ..*..........*..........*.....
------------------------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
31 3002 1.000000 0.000000 1.000000 1.000000 2
32 3002 1.000000 0.000000 1.000000 1.000000 2
33 3002 1.000000 0.000000 1.000000 1.000000 2
34 3002 1.000000 0.000000 1.000000 1.000000 2
35 3002 1.000000 0.000000 1.000000 1.000000 2
36 3002 1.000000 0.000000 1.000000 1.000000 2
37 3002 1.000000 0.000000 1.000000 1.000000 2
38 3002 1.000000 0.000000 1.000000 1.000000 2
39 3002 1.000000 0.000000 1.000000 1.000000 2
40 3002 1.000000 0.000000 1.000000 1.000000 2
41 3001 0.999667 0.000471 0.999334 1.000000 2
42 3000 0.999334 0.000000 0.999334 0.999334 2
43 2993 0.997002 0.000471 0.996669 0.997335 2
44 2968 0.988674 0.000942 0.988008 0.989340 2
45 2955 0.984344 0.006124 0.980013 0.988674 2
46 2898 0.965356 0.005653 0.961359 0.969354 2
47 2801 0.933045 0.010835 0.925383 0.940706 2
48 2103 0.700533 0.017430 0.688208 0.712858 2
49 1562 0.520320 0.013191 0.510993 0.529647 2
50 1453 0.484011 0.006124 0.479680 0.488341 2
51 1366 0.455030 0.003769 0.452365 0.457695 2
52 1197 0.398734 0.016488 0.387075 0.410393 2
53 1113 0.370753 0.008951 0.364424 0.377082 2
54 1103 0.367422 0.011777 0.359094 0.375750 2
55 1031 0.343438 0.008951 0.337109 0.349767 2
56 987 0.328781 0.011777 0.320453 0.337109 2
57 964 0.321119 0.001884 0.319787 0.322452 2
58 959 0.319454 0.009893 0.312458 0.326449 2
59 955 0.318121 0.017430 0.305796 0.330446 2
60 951 0.316789 0.017430 0.304464 0.329114 2
61 949 0.316123 0.003298 0.313791 0.318454 2
62 948 0.315789 0.004711 0.312458 0.319121 2
63 856 0.285143 0.013191 0.275816 0.294470 2
64 786 0.261825 0.002827 0.259827 0.263824 2
65 646 0.215190 0.014133 0.205197 0.225183 2
66 508 0.169221 0.001884 0.167888 0.170553 2
67 484 0.161226 0.003769 0.158561 0.163891 2
68 445 0.148235 0.003298 0.145903 0.150566 2
69 445 0.148235 0.011777 0.139907 0.156562 2
70 440 0.146569 0.010364 0.139241 0.153897 2
71 432 0.143904 0.007537 0.138574 0.149234 2
72 429 0.142905 0.011777 0.134577 0.151233 2
73 426 0.141905 0.006595 0.137242 0.146569 2
74 423 0.140906 0.028737 0.120586 0.161226 2
75 423 0.140906 0.000471 0.140573 0.141239 2
76 418 0.139241 0.000942 0.138574 0.139907 2
77 416 0.138574 0.006595 0.133911 0.143238 2
78 414 0.137908 0.005653 0.133911 0.141905 2
79 409 0.136243 0.008951 0.129913 0.142572 2
80 390 0.129913 0.012248 0.121252 0.138574 2
81 383 0.127582 0.000471 0.127249 0.127915 2
82 292 0.097268 0.008480 0.091272 0.103264 2
83 283 0.094270 0.017430 0.081945 0.106596 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.003306 0.000006 0.000087 0.007877 0.002753 1.000 2
length{all}[2] 0.008410 0.000017 0.001316 0.016115 0.007902 1.000 2
length{all}[3] 0.001628 0.000003 0.000000 0.004748 0.001139 1.000 2
length{all}[4] 0.003200 0.000005 0.000138 0.007720 0.002674 1.000 2
length{all}[5] 0.042145 0.000122 0.021812 0.064555 0.041244 1.000 2
length{all}[6] 0.025946 0.000060 0.011954 0.041783 0.025270 1.000 2
length{all}[7] 0.001620 0.000003 0.000000 0.004899 0.001135 1.000 2
length{all}[8] 0.001613 0.000003 0.000000 0.004594 0.001135 1.000 2
length{all}[9] 0.039559 0.000102 0.021078 0.060420 0.038544 1.000 2
length{all}[10] 0.001600 0.000003 0.000000 0.004692 0.001114 1.000 2
length{all}[11] 0.001673 0.000003 0.000000 0.005133 0.001130 1.001 2
length{all}[12] 0.040706 0.000104 0.021052 0.060250 0.039995 1.001 2
length{all}[13] 0.001643 0.000003 0.000001 0.004864 0.001151 1.000 2
length{all}[14] 0.001643 0.000003 0.000000 0.004954 0.001112 1.000 2
length{all}[15] 0.001609 0.000002 0.000001 0.004682 0.001149 1.000 2
length{all}[16] 0.037653 0.000099 0.018378 0.056590 0.036794 1.000 2
length{all}[17] 0.001710 0.000003 0.000002 0.005276 0.001215 1.000 2
length{all}[18] 0.004881 0.000008 0.000420 0.010711 0.004317 1.001 2
length{all}[19] 0.104692 0.000691 0.057396 0.160062 0.102845 1.002 2
length{all}[20] 0.003294 0.000006 0.000085 0.007950 0.002742 1.000 2
length{all}[21] 0.036178 0.000101 0.017639 0.055140 0.035309 1.000 2
length{all}[22] 0.004251 0.000008 0.000019 0.009750 0.003685 1.000 2
length{all}[23] 0.001681 0.000003 0.000001 0.005191 0.001174 1.000 2
length{all}[24] 0.001670 0.000003 0.000000 0.005097 0.001098 1.000 2
length{all}[25] 0.001611 0.000003 0.000001 0.004859 0.001080 1.000 2
length{all}[26] 0.009164 0.000016 0.002083 0.016709 0.008677 1.000 2
length{all}[27] 0.019332 0.000047 0.007515 0.033133 0.018621 1.000 2
length{all}[28] 0.128610 0.000714 0.078745 0.182015 0.127221 1.000 2
length{all}[29] 0.002804 0.000005 0.000002 0.007294 0.002204 1.000 2
length{all}[30] 0.003178 0.000005 0.000018 0.007612 0.002639 1.000 2
length{all}[31] 0.182883 0.001174 0.121778 0.251863 0.179989 1.000 2
length{all}[32] 0.107034 0.000650 0.061628 0.158665 0.104531 1.000 2
length{all}[33] 0.032836 0.000090 0.014509 0.051166 0.032170 1.000 2
length{all}[34] 0.043449 0.000113 0.023524 0.064341 0.042975 1.000 2
length{all}[35] 0.014931 0.000037 0.004023 0.027166 0.014274 1.003 2
length{all}[36] 0.056978 0.000300 0.022916 0.090123 0.056059 1.000 2
length{all}[37] 0.033752 0.000078 0.017007 0.050994 0.033181 1.000 2
length{all}[38] 0.043917 0.000128 0.022548 0.066539 0.043216 1.000 2
length{all}[39] 0.072657 0.000443 0.033059 0.113676 0.071028 1.000 2
length{all}[40] 0.061853 0.000200 0.035758 0.089154 0.060856 1.000 2
length{all}[41] 0.036214 0.000131 0.015033 0.058817 0.035036 1.001 2
length{all}[42] 0.024451 0.000080 0.007666 0.041437 0.023502 1.000 2
length{all}[43] 0.020400 0.000078 0.003792 0.036708 0.019482 1.000 2
length{all}[44] 0.004613 0.000008 0.000438 0.009995 0.004136 1.000 2
length{all}[45] 0.003283 0.000005 0.000099 0.007692 0.002799 1.000 2
length{all}[46] 0.003351 0.000006 0.000032 0.008206 0.002768 1.000 2
length{all}[47] 0.005401 0.000011 0.000190 0.011436 0.004968 1.000 2
length{all}[48] 0.019039 0.000116 0.000037 0.039295 0.018116 1.000 2
length{all}[49] 0.009233 0.000039 0.000001 0.021062 0.008210 0.999 2
length{all}[50] 0.020328 0.000105 0.002643 0.040807 0.019312 0.999 2
length{all}[51] 0.024355 0.000147 0.002931 0.047719 0.023038 0.999 2
length{all}[52] 0.002011 0.000004 0.000000 0.005994 0.001379 1.000 2
length{all}[53] 0.003178 0.000007 0.000007 0.008725 0.002492 1.000 2
length{all}[54] 0.003211 0.000007 0.000002 0.008074 0.002613 1.000 2
length{all}[55] 0.001679 0.000003 0.000004 0.005124 0.001144 0.999 2
length{all}[56] 0.001601 0.000002 0.000002 0.004276 0.001199 1.002 2
length{all}[57] 0.001669 0.000003 0.000001 0.005281 0.001133 1.000 2
length{all}[58] 0.001780 0.000003 0.000002 0.005261 0.001269 0.999 2
length{all}[59] 0.009565 0.000050 0.000005 0.022764 0.008201 1.001 2
length{all}[60] 0.001701 0.000003 0.000002 0.005160 0.001136 1.000 2
length{all}[61] 0.001619 0.000003 0.000002 0.004734 0.001055 0.999 2
length{all}[62] 0.001717 0.000003 0.000002 0.005439 0.001184 0.999 2
length{all}[63] 0.001659 0.000003 0.000000 0.004865 0.001174 0.999 2
length{all}[64] 0.002547 0.000005 0.000003 0.006614 0.001957 1.000 2
length{all}[65] 0.012028 0.000070 0.000017 0.027068 0.010532 0.999 2
length{all}[66] 0.002153 0.000004 0.000011 0.006267 0.001527 0.998 2
length{all}[67] 0.006656 0.000028 0.000015 0.017012 0.005439 1.001 2
length{all}[68] 0.001733 0.000003 0.000000 0.004849 0.001217 1.003 2
length{all}[69] 0.001669 0.000003 0.000000 0.005010 0.001219 1.001 2
length{all}[70] 0.001706 0.000003 0.000015 0.005429 0.001093 1.002 2
length{all}[71] 0.001775 0.000003 0.000006 0.005343 0.001232 1.002 2
length{all}[72] 0.001502 0.000002 0.000009 0.004501 0.001078 0.998 2
length{all}[73] 0.001626 0.000003 0.000008 0.005061 0.001027 0.999 2
length{all}[74] 0.001644 0.000003 0.000011 0.005572 0.001159 1.006 2
length{all}[75] 0.001570 0.000003 0.000001 0.005191 0.001015 0.998 2
length{all}[76] 0.001684 0.000003 0.000005 0.005138 0.001109 1.006 2
length{all}[77] 0.001626 0.000003 0.000001 0.004861 0.001174 1.021 2
length{all}[78] 0.001562 0.000003 0.000006 0.004598 0.001023 0.998 2
length{all}[79] 0.001674 0.000003 0.000001 0.005629 0.001080 0.998 2
length{all}[80] 0.001632 0.000003 0.000000 0.004915 0.001036 0.999 2
length{all}[81] 0.001683 0.000003 0.000001 0.004821 0.001179 1.003 2
length{all}[82] 0.001712 0.000003 0.000001 0.005268 0.001103 0.997 2
length{all}[83] 0.001750 0.000003 0.000009 0.004981 0.001163 0.998 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.006693
Maximum standard deviation of split frequencies = 0.028737
Average PSRF for parameter values (excluding NA and >10.0) = 1.000
Maximum PSRF for parameter values = 1.021
Clade credibility values:
/--------------------------------------------------------------------- C67 (1)
|
|--------------------------------------------------------------------- C61 (17)
|
| /--------------------------------------------------------- C66 (2)
| |
| | /------ C11 (3)
| | |
| | |------ C1 (14)
| | |
| | /-------100------+------ C27 (23)
| | | |
| | | |------ C32 (25)
| | | |
| | | \------ C26 (30)
| | |
| | | /----------- C19 (7)
| | | |
| | | |----------- C20 (8)
| | |----100----+
| | /-100-+ | /------ C22 (10)
+ | | | \-99-+
| | | | \------ C21 (15)
| | | |
| | | | /----------- C78 (9)
| /--93-+ | | |
| | | | | /-100-+ /------ C81 (22)
| | | | | | | |
| | | /-100+ | | \-100+------ C88 (26)
| | | | | | | |
| | | | | \--70-+ \------ C89 (29)
| | | | | |
| | | | | | /------ C30 (12)
| | | /-100-+ | \----100---+
| | | | | | \------ C12 (16)
| | | | | |
| | | | | \----------------------------- C99 (19)
| | | /-100-+ |
| | | | | \---------------------------------- C5 (28)
| | | | |
| | | | | /------ C13 (5)
| | | /-100-+ \----------------52---------------+
\--97-+ | | | \------ C38 (21)
| | | |
| | | | /------ C16 (6)
| | | \------------------100------------------+
| \-100+ \------ C2 (27)
| |
| | /----------- C14 (4)
| | |
| | | /------ C58 (11)
| \-------------------100------------------+-98-+
| | \------ C36 (18)
| |
| \----------- C100 (24)
|
|--------------------------------------------------------------- C60 (13)
|
\--------------------------------------------------------------- C72 (20)
Phylogram (based on average branch lengths):
/ C67 (1)
|
| C61 (17)
|
|/- C66 (2)
||
|| / C11 (3)
|| |
|| | C1 (14)
|| |
|| /------+ C27 (23)
|| | |
|| | | C32 (25)
|| | |
|| | \- C26 (30)
|| |
|| | / C19 (7)
|| | |
|| | | C20 (8)
|| |-------+
|| /----------------------+ |- C22 (10)
+| | | |
|| | | \- C21 (15)
|| | |
|| | | /----- C78 (9)
|+ | | |
|| | | /--+ / C81 (22)
|| | | | | |
|| /------------+ | | \-----+- C88 (26)
|| | | | | |
|| | | \-+ \ C89 (29)
|| | | |
|| | | | /----- C30 (12)
|| /--------+ | \----+
|| | | | \----- C12 (16)
|| | | |
|| | | \------------- C99 (19)
|| /-+ |
|| | | \---------------- C5 (28)
|| | |
|| | |/----- C13 (5)
|| /-----+ \+
|| | | \----- C38 (21)
|| | |
|| | | /--- C16 (6)
|| | \---+
|\---+ \-- C2 (27)
| |
| | / C14 (4)
| | |
| | | C58 (11)
| \-+
| |- C36 (18)
| |
| \ C100 (24)
|
| C60 (13)
|
\- C72 (20)
|-----------| 0.100 expected changes per site
Calculating tree probabilities...
Credible sets of trees (2943 trees sampled):
50 % credible set contains 1442 trees
90 % credible set contains 2643 trees
95 % credible set contains 2793 trees
99 % credible set contains 2913 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Wed Nov 09 22:46:28 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result--
-- Starting log on Thu Nov 10 16:39:56 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/codeml,A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C1 897 sites
reading seq# 2 C12 897 sites
reading seq# 3 C21 897 sites
reading seq# 4 C58 897 sites
reading seq# 5 C36 897 sites
reading seq# 6 C61 897 sites
reading seq# 7 C99 897 sites
reading seq# 8 C60 897 sites
reading seq# 9 C5 897 sites
reading seq#10 C72 897 sites
reading seq#11 C66 897 sites
reading seq#12 C67 897 sites
reading seq#13 C11 897 sites
reading seq#14 C38 897 sites
reading seq#15 C81 897 sites
reading seq#16 C13 897 sites
reading seq#17 C14 897 sites
reading seq#18 C16 897 sites
reading seq#19 C100 897 sites
reading seq#20 C27 897 sites
reading seq#21 C20 897 sites
reading seq#22 C19 897 sites
reading seq#23 C88 897 sites
reading seq#24 C2 897 sites
reading seq#25 C32 897 sites
reading seq#26 C22 897 sites
reading seq#27 C78 897 sites
reading seq#28 C26 897 sites
reading seq#29 C89 897 sites
reading seq#30 C30 897 sitesns = 30 ls = 897
Reading sequences, sequential format..
Reading seq # 1: C1
Reading seq # 2: C12
Reading seq # 3: C21
Reading seq # 4: C58
Reading seq # 5: C36
Reading seq # 6: C61
Reading seq # 7: C99
Reading seq # 8: C60
Reading seq # 9: C5
Reading seq #10: C72
Reading seq #11: C66
Reading seq #12: C67
Reading seq #13: C11
Reading seq #14: C38
Reading seq #15: C81
Reading seq #16: C13
Reading seq #17: C14
Reading seq #18: C16
Reading seq #19: C100
Reading seq #20: C27
Reading seq #21: C20
Reading seq #22: C19
Reading seq #23: C88
Reading seq #24: C2
Reading seq #25: C32
Reading seq #26: C22
Reading seq #27: C78
Reading seq #28: C26
Reading seq #29: C89
Reading seq #30: C30
Sites with gaps or missing data are removed.
111 ambiguity characters in seq. 1
105 ambiguity characters in seq. 2
111 ambiguity characters in seq. 3
111 ambiguity characters in seq. 4
111 ambiguity characters in seq. 5
114 ambiguity characters in seq. 6
159 ambiguity characters in seq. 7
114 ambiguity characters in seq. 8
105 ambiguity characters in seq. 9
114 ambiguity characters in seq. 10
114 ambiguity characters in seq. 11
114 ambiguity characters in seq. 12
111 ambiguity characters in seq. 13
78 ambiguity characters in seq. 14
105 ambiguity characters in seq. 15
114 ambiguity characters in seq. 16
111 ambiguity characters in seq. 17
111 ambiguity characters in seq. 18
111 ambiguity characters in seq. 19
111 ambiguity characters in seq. 20
111 ambiguity characters in seq. 21
111 ambiguity characters in seq. 22
105 ambiguity characters in seq. 23
30 ambiguity characters in seq. 24
111 ambiguity characters in seq. 25
111 ambiguity characters in seq. 26
108 ambiguity characters in seq. 27
111 ambiguity characters in seq. 28
105 ambiguity characters in seq. 29
108 ambiguity characters in seq. 30
85 sites are removed. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 34 45 46 53 54 58 59 62 63 64 65 70 99 100 247 248 249 250 251 252 253 254 255 256 257 258 259 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299
Sequences read..
Counting site patterns.. 0:00
Compressing, 184 patterns at 214 / 214 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 184 patterns at 214 / 214 sites (100.0%), 0:00
Counting codons..
3480 bytes for distance
179584 bytes for conP
16192 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(12, 6, ((11, (((((((13, 1, 20, 25, 28), (22, 21, (26, 3)), ((27, (15, 23, 29)), (30, 2))), 7), 9), (16, 14)), (18, 24)), (17, (4, 5), 19))), 8, 10)); MP score: 423
1795840 bytes for conP, adjusted
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
38
0.030624 0.090592 0.088975 0.028733 0.102428 0.101614 0.067590 0.023342 0.023485 0.085611 0.096157 0.053758 0.018816 0.108476 0.043216 0.038200 0.067654 0.044110 0.053349 0.103982 0.052830 0.046490 0.050020 0.057768 0.080758 0.070853 0.083254 0.019796 0.089219 0.067440 0.026825 0.083003 0.035125 0.046235 0.104636 0.032989 0.029447 0.086140 0.100998 0.039759 0.061503 0.037019 0.084470 0.107181 0.029784 0.038052 0.049974 0.041093 0.071516 0.300000 0.663335 0.344217
ntime & nrate & np: 49 2 52
Bounds (np=52):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 12.271739
np = 52
lnL0 = -3928.495904
Iterating by ming2
Initial: fx= 3928.495904
x= 0.03062 0.09059 0.08897 0.02873 0.10243 0.10161 0.06759 0.02334 0.02348 0.08561 0.09616 0.05376 0.01882 0.10848 0.04322 0.03820 0.06765 0.04411 0.05335 0.10398 0.05283 0.04649 0.05002 0.05777 0.08076 0.07085 0.08325 0.01980 0.08922 0.06744 0.02682 0.08300 0.03512 0.04623 0.10464 0.03299 0.02945 0.08614 0.10100 0.03976 0.06150 0.03702 0.08447 0.10718 0.02978 0.03805 0.04997 0.04109 0.07152 0.30000 0.66334 0.34422
1 h-m-p 0.0000 0.0001 1799.4533 ++ 3676.002089 m 0.0001 57 | 1/52
2 h-m-p 0.0000 0.0000 1617.3120 ++ 3603.295443 m 0.0000 112 | 2/52
3 h-m-p 0.0000 0.0000 4529.0750 ++ 3598.496286 m 0.0000 167 | 3/52
4 h-m-p 0.0000 0.0000 15041158.5649 ++ 3561.580766 m 0.0000 222 | 4/52
5 h-m-p 0.0000 0.0000 32352.6540 ++ 3546.494700 m 0.0000 277 | 5/52
6 h-m-p 0.0000 0.0000 2432.1946 ++ 3540.462561 m 0.0000 332 | 6/52
7 h-m-p 0.0000 0.0000 1850.7354 ++ 3530.707795 m 0.0000 387 | 7/52
8 h-m-p 0.0000 0.0000 1269.9315 ++ 3525.694471 m 0.0000 442 | 8/52
9 h-m-p 0.0000 0.0000 2823.6009 ++ 3524.637511 m 0.0000 497 | 9/52
10 h-m-p 0.0000 0.0000 158587.6067 ++ 3520.368550 m 0.0000 552 | 10/52
11 h-m-p 0.0000 0.0000 16728.9801 ++ 3486.355714 m 0.0000 607 | 11/52
12 h-m-p 0.0000 0.0000 3801.7953 ++ 3476.168725 m 0.0000 662 | 12/52
13 h-m-p 0.0000 0.0000 1324.5371 ++ 3466.999399 m 0.0000 717 | 13/52
14 h-m-p 0.0000 0.0000 866.5857 ++ 3466.709316 m 0.0000 772 | 14/52
15 h-m-p 0.0000 0.0000 2578.8382 ++ 3465.922422 m 0.0000 827 | 15/52
16 h-m-p 0.0000 0.0000 1558.8243 ++ 3427.242817 m 0.0000 882 | 15/52
17 h-m-p 0.0000 0.0002 408.0769 +CYCYYCCC 3402.867700 7 0.0002 949 | 15/52
18 h-m-p 0.0000 0.0000 1134.6175 +YYCCYYC 3393.562148 6 0.0000 1014 | 15/52
19 h-m-p 0.0000 0.0000 1068.0884 +YYYYCYCCC 3388.865425 8 0.0000 1081 | 15/52
20 h-m-p 0.0000 0.0000 1640.0251 +YYYYYCCCCC 3384.716315 9 0.0000 1150 | 15/52
21 h-m-p 0.0000 0.0001 561.0946 +YYYYCCC 3373.084302 6 0.0001 1214 | 15/52
22 h-m-p 0.0000 0.0001 424.3890 +YYYCC 3364.296957 4 0.0001 1275 | 15/52
23 h-m-p 0.0000 0.0001 259.9633 +YYCCC 3362.885983 4 0.0000 1337 | 15/52
24 h-m-p 0.0000 0.0005 256.6425 +CYCCCC 3357.420056 5 0.0002 1402 | 15/52
25 h-m-p 0.0003 0.0014 83.4682 YCCC 3355.236860 3 0.0006 1462 | 15/52
26 h-m-p 0.0011 0.0070 45.9314 YCCC 3354.605779 3 0.0005 1522 | 15/52
27 h-m-p 0.0005 0.0024 25.1673 YCCC 3353.845343 3 0.0009 1582 | 15/52
28 h-m-p 0.0006 0.0050 38.9583 +YCCC 3350.747404 3 0.0017 1643 | 15/52
29 h-m-p 0.0007 0.0035 42.2769 +YCCCC 3343.724151 4 0.0020 1706 | 15/52
30 h-m-p 0.0003 0.0015 79.9719 +CYCC 3332.858170 3 0.0012 1767 | 15/52
31 h-m-p 0.0001 0.0005 123.2632 +YYYCYCCC 3326.394852 7 0.0004 1833 | 15/52
32 h-m-p 0.0004 0.0020 101.5874 CCCC 3323.127749 3 0.0006 1894 | 15/52
33 h-m-p 0.0002 0.0008 63.7379 YCCCC 3322.237415 4 0.0004 1956 | 15/52
34 h-m-p 0.0019 0.0168 13.7657 YCCC 3320.667268 3 0.0031 2016 | 15/52
35 h-m-p 0.0005 0.0026 37.5431 YCCCC 3317.486492 4 0.0011 2078 | 15/52
36 h-m-p 0.0004 0.0022 74.6782 YCCCCC 3310.986518 5 0.0009 2142 | 15/52
37 h-m-p 0.0003 0.0016 112.5584 CCCCC 3307.016962 4 0.0005 2205 | 15/52
38 h-m-p 0.0006 0.0028 50.9431 CCCC 3305.916977 3 0.0006 2266 | 15/52
39 h-m-p 0.0014 0.0069 21.0422 CYC 3304.990653 2 0.0013 2324 | 15/52
40 h-m-p 0.0012 0.0064 21.5025 YCCCC 3298.362141 4 0.0031 2386 | 15/52
41 h-m-p 0.0005 0.0024 92.6986 +YYCCCC 3270.947435 5 0.0015 2450 | 15/52
42 h-m-p 0.0003 0.0013 136.6081 YCCCCC 3264.344878 5 0.0005 2514 | 15/52
43 h-m-p 0.0004 0.0022 61.3549 CCCC 3263.259988 3 0.0005 2575 | 15/52
44 h-m-p 0.0015 0.0094 21.3034 YC 3262.915094 1 0.0008 2631 | 15/52
45 h-m-p 0.0069 0.0427 2.4471 +YCYCCC 3240.619212 5 0.0395 2696 | 15/52
46 h-m-p 0.0001 0.0006 77.6576 +YYCCC 3239.169079 4 0.0004 2758 | 15/52
47 h-m-p 0.0017 0.0086 11.6724 CCCC 3236.815686 3 0.0029 2819 | 15/52
48 h-m-p 0.0309 0.1544 0.9497 YCYCCC 3227.698295 5 0.0779 2882 | 15/52
49 h-m-p 0.0137 0.0685 0.8602 +CYCCC 3218.096531 4 0.0591 2982 | 15/52
50 h-m-p 0.1550 0.7750 0.2592 +YCCCC 3207.464856 4 0.4074 3082 | 15/52
51 h-m-p 0.0525 0.2623 0.4547 +YYCCC 3198.096817 4 0.1911 3181 | 15/52
52 h-m-p 0.1075 0.9396 0.8088 +YCCCC 3181.744663 4 0.2637 3281 | 15/52
53 h-m-p 0.2376 1.1881 0.2625 +CYCCC 3162.450316 4 0.9847 3381 | 15/52
54 h-m-p 0.3977 1.9885 0.2323 +YCCC 3147.549818 3 1.1283 3479 | 15/52
55 h-m-p 1.0386 5.1929 0.1787 YYCCC 3138.291109 4 1.5412 3577 | 15/52
56 h-m-p 0.3884 1.9422 0.1843 YCCC 3135.319199 3 0.7305 3674 | 15/52
57 h-m-p 0.7457 3.7284 0.1445 YCCCC 3131.547261 4 1.4143 3773 | 15/52
58 h-m-p 0.9855 4.9274 0.0765 YCCC 3129.482990 3 1.9773 3870 | 15/52
59 h-m-p 1.1017 5.5083 0.0689 CCC 3127.893252 2 1.6464 3966 | 15/52
60 h-m-p 0.7815 3.9075 0.0463 YCCC 3126.760591 3 1.6685 4063 | 15/52
61 h-m-p 1.1454 5.7268 0.0396 CCCC 3125.891916 3 1.9787 4161 | 15/52
62 h-m-p 1.6000 8.0000 0.0201 CCC 3125.344736 2 2.0974 4257 | 15/52
63 h-m-p 1.0407 8.0000 0.0406 YCCC 3124.814066 3 1.9682 4354 | 15/52
64 h-m-p 1.6000 8.0000 0.0284 CCC 3124.566248 2 1.8498 4450 | 15/52
65 h-m-p 1.6000 8.0000 0.0252 CC 3124.444548 1 2.0564 4544 | 15/52
66 h-m-p 1.6000 8.0000 0.0056 YC 3124.378122 1 2.5672 4637 | 15/52
67 h-m-p 1.6000 8.0000 0.0030 YC 3124.331706 1 2.8376 4730 | 15/52
68 h-m-p 1.6000 8.0000 0.0043 YC 3124.292083 1 2.5813 4823 | 15/52
69 h-m-p 1.6000 8.0000 0.0035 +YC 3124.178432 1 6.9525 4917 | 15/52
70 h-m-p 1.6000 8.0000 0.0048 +YC 3123.988202 1 4.1530 5011 | 15/52
71 h-m-p 1.6000 8.0000 0.0090 YCCC 3123.635542 3 3.7390 5108 | 15/52
72 h-m-p 1.6000 8.0000 0.0085 YC 3123.400786 1 2.7138 5201 | 15/52
73 h-m-p 1.6000 8.0000 0.0067 YCC 3123.188132 2 3.0047 5296 | 15/52
74 h-m-p 1.6000 8.0000 0.0064 YC 3122.971257 1 3.9312 5389 | 15/52
75 h-m-p 1.6000 8.0000 0.0066 CC 3122.829049 1 2.4157 5483 | 15/52
76 h-m-p 1.6000 8.0000 0.0031 +YC 3122.676819 1 4.3217 5577 | 15/52
77 h-m-p 1.6000 8.0000 0.0079 CCC 3122.541999 2 2.4652 5673 | 15/52
78 h-m-p 1.6000 8.0000 0.0052 CC 3122.474246 1 2.1117 5767 | 15/52
79 h-m-p 1.4816 8.0000 0.0075 CC 3122.449258 1 1.5109 5861 | 15/52
80 h-m-p 1.6000 8.0000 0.0035 CC 3122.437181 1 1.8552 5955 | 15/52
81 h-m-p 1.6000 8.0000 0.0021 CC 3122.430290 1 2.5461 6049 | 15/52
82 h-m-p 1.6000 8.0000 0.0024 +YC 3122.421292 1 4.1612 6143 | 15/52
83 h-m-p 1.6000 8.0000 0.0016 +CC 3122.397776 1 5.9534 6238 | 15/52
84 h-m-p 1.6000 8.0000 0.0031 YC 3122.355559 1 3.9361 6331 | 15/52
85 h-m-p 1.6000 8.0000 0.0040 +YC 3122.250327 1 4.7844 6425 | 15/52
86 h-m-p 1.6000 8.0000 0.0050 CC 3122.194982 1 2.1711 6519 | 15/52
87 h-m-p 1.6000 8.0000 0.0020 CCC 3122.177830 2 1.7879 6615 | 15/52
88 h-m-p 0.7333 8.0000 0.0050 YC 3122.172721 1 1.2201 6708 | 15/52
89 h-m-p 1.6000 8.0000 0.0017 CC 3122.168599 1 2.4192 6802 | 15/52
90 h-m-p 1.6000 8.0000 0.0015 CC 3122.167319 1 2.0375 6896 | 15/52
91 h-m-p 1.6000 8.0000 0.0015 YC 3122.166704 1 2.7265 6989 | 15/52
92 h-m-p 1.6000 8.0000 0.0006 C 3122.166483 0 2.2354 7081 | 15/52
93 h-m-p 1.6000 8.0000 0.0001 C 3122.166439 0 1.7579 7173 | 15/52
94 h-m-p 1.6000 8.0000 0.0001 C 3122.166430 0 2.3705 7265 | 15/52
95 h-m-p 1.6000 8.0000 0.0001 C 3122.166428 0 1.6356 7357 | 15/52
96 h-m-p 1.6000 8.0000 0.0000 C 3122.166428 0 2.3823 7449 | 15/52
97 h-m-p 1.6000 8.0000 0.0000 C 3122.166428 0 1.7471 7541 | 15/52
98 h-m-p 1.6000 8.0000 0.0000 C 3122.166428 0 1.7842 7633 | 15/52
99 h-m-p 1.6000 8.0000 0.0000 C 3122.166428 0 1.6000 7725 | 15/52
100 h-m-p 1.4868 8.0000 0.0000 Y 3122.166428 0 0.3717 7817 | 15/52
101 h-m-p 0.2737 8.0000 0.0000 Y 3122.166428 0 0.0684 7909 | 15/52
102 h-m-p 0.0424 8.0000 0.0000 --------------.. | 15/52
103 h-m-p 0.0090 4.5163 0.0027 ------------- | 15/52
104 h-m-p 0.0090 4.5163 0.0027 -------------
Out..
lnL = -3122.166428
8220 lfun, 24660 eigenQcodon, 805560 P(t)
end of tree file.
Time used: 6:13
Model 2: PositiveSelection
TREE # 1
(12, 6, ((11, (((((((13, 1, 20, 25, 28), (22, 21, (26, 3)), ((27, (15, 23, 29)), (30, 2))), 7), 9), (16, 14)), (18, 24)), (17, (4, 5), 19))), 8, 10)); MP score: 423
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
38
0.072002 0.058137 0.080656 0.031527 0.043314 0.098878 0.034412 0.022600 0.051021 0.069641 0.038561 0.082797 0.095795 0.059352 0.015584 0.087741 0.083424 0.100990 0.092378 0.088059 0.084520 0.029461 0.089020 0.010574 0.039447 0.083526 0.011335 0.015252 0.069396 0.043951 0.045720 0.087610 0.029555 0.075076 0.029643 0.021247 0.015303 0.011997 0.046262 0.020211 0.107371 0.010532 0.066615 0.025873 0.016901 0.052171 0.037787 0.047993 0.066353 2.522420 1.411950 0.502659 0.278761 1.318673
ntime & nrate & np: 49 3 54
Bounds (np=54):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 5.697790
np = 54
lnL0 = -3748.546333
Iterating by ming2
Initial: fx= 3748.546333
x= 0.07200 0.05814 0.08066 0.03153 0.04331 0.09888 0.03441 0.02260 0.05102 0.06964 0.03856 0.08280 0.09579 0.05935 0.01558 0.08774 0.08342 0.10099 0.09238 0.08806 0.08452 0.02946 0.08902 0.01057 0.03945 0.08353 0.01133 0.01525 0.06940 0.04395 0.04572 0.08761 0.02956 0.07508 0.02964 0.02125 0.01530 0.01200 0.04626 0.02021 0.10737 0.01053 0.06661 0.02587 0.01690 0.05217 0.03779 0.04799 0.06635 2.52242 1.41195 0.50266 0.27876 1.31867
1 h-m-p 0.0000 0.0001 2939.1883 ++ 3457.786767 m 0.0001 113 | 1/54
2 h-m-p 0.0000 0.0000 1031.5310 ++ 3451.409955 m 0.0000 224 | 2/54
3 h-m-p 0.0000 0.0000 2123.2748 ++ 3421.084158 m 0.0000 334 | 3/54
4 h-m-p 0.0000 0.0000 6155.3379 ++ 3409.399747 m 0.0000 443 | 4/54
5 h-m-p 0.0000 0.0000 20172.0476 ++ 3390.437322 m 0.0000 551 | 5/54
6 h-m-p 0.0000 0.0000 1097105.1856 ++ 3365.866822 m 0.0000 658 | 6/54
7 h-m-p 0.0000 0.0000 6109.3332 ++ 3344.286430 m 0.0000 764 | 7/54
8 h-m-p 0.0000 0.0000 61644.1990 ++ 3340.463772 m 0.0000 869 | 8/54
9 h-m-p 0.0000 0.0000 93822.6578 ++ 3330.023227 m 0.0000 973 | 9/54
10 h-m-p 0.0000 0.0000 13026.5373 ++ 3320.568293 m 0.0000 1076 | 10/54
11 h-m-p 0.0000 0.0000 9386.4090 ++ 3297.174336 m 0.0000 1178 | 11/54
12 h-m-p 0.0000 0.0000 6460.3696 ++ 3296.407709 m 0.0000 1279 | 12/54
13 h-m-p 0.0000 0.0000 3703.7851 ++ 3295.736279 m 0.0000 1379 | 13/54
14 h-m-p 0.0000 0.0000 3602.0698 ++ 3293.567674 m 0.0000 1478 | 14/54
15 h-m-p 0.0000 0.0000 1499.8231 ++ 3291.097147 m 0.0000 1576 | 15/54
16 h-m-p 0.0000 0.0002 864.8886 ++YYYYYCYC 3260.375299 7 0.0002 1683 | 15/54
17 h-m-p 0.0000 0.0000 2614.4345 +YYCYYCCC 3253.107231 7 0.0000 1790 | 15/54
18 h-m-p 0.0000 0.0000 1819.7927 +YYYYYYC 3249.401197 6 0.0000 1893 | 15/54
19 h-m-p 0.0000 0.0000 1464.6385 +YYCYC 3248.230628 4 0.0000 1995 | 15/54
20 h-m-p 0.0000 0.0000 2695.0210 +YCYCCC 3243.941475 5 0.0000 2100 | 15/54
21 h-m-p 0.0001 0.0005 137.5146 YCCC 3241.671773 3 0.0002 2201 | 15/54
22 h-m-p 0.0002 0.0011 123.3091 +YYCCC 3234.909548 4 0.0008 2304 | 15/54
23 h-m-p 0.0000 0.0002 251.9397 +YCYCCC 3230.843889 5 0.0002 2409 | 15/54
24 h-m-p 0.0000 0.0002 1044.0046 +YYCCCC 3223.056484 5 0.0001 2514 | 15/54
25 h-m-p 0.0000 0.0001 665.1273 +YYYCYYCCC 3217.670304 8 0.0001 2623 | 15/54
26 h-m-p 0.0000 0.0002 222.2131 YCYCCC 3216.545367 5 0.0001 2727 | 15/54
27 h-m-p 0.0001 0.0019 197.6090 +CCC 3212.520503 2 0.0006 2828 | 15/54
28 h-m-p 0.0002 0.0010 285.2014 YCCC 3208.599958 3 0.0004 2929 | 15/54
29 h-m-p 0.0004 0.0024 255.6316 +YCCCC 3196.068121 4 0.0014 3033 | 15/54
30 h-m-p 0.0001 0.0007 742.8361 +YCCC 3186.313756 3 0.0004 3135 | 15/54
31 h-m-p 0.0003 0.0013 503.0088 YCCCC 3178.334938 4 0.0005 3238 | 15/54
32 h-m-p 0.0002 0.0008 354.4975 +YCCC 3174.036062 3 0.0004 3340 | 15/54
33 h-m-p 0.0007 0.0037 72.0915 YCCC 3173.233577 3 0.0006 3441 | 15/54
34 h-m-p 0.0005 0.0023 47.1442 YCCC 3172.476093 3 0.0009 3542 | 15/54
35 h-m-p 0.0004 0.0078 91.2617 +YCCCC 3165.754615 4 0.0039 3646 | 15/54
36 h-m-p 0.0002 0.0009 312.2149 +YCCC 3162.877462 3 0.0005 3748 | 15/54
37 h-m-p 0.0003 0.0017 166.7393 CCCC 3161.754946 3 0.0004 3850 | 15/54
38 h-m-p 0.0016 0.0082 22.7278 YCC 3161.527252 2 0.0009 3949 | 15/54
39 h-m-p 0.0003 0.0111 74.5344 +YCCC 3159.403025 3 0.0026 4051 | 15/54
40 h-m-p 0.0004 0.0067 454.8339 +CCCC 3150.728085 3 0.0019 4154 | 15/54
41 h-m-p 0.0006 0.0029 336.4606 CYC 3148.752626 2 0.0006 4253 | 15/54
42 h-m-p 0.0026 0.0130 31.1969 YCC 3148.254648 2 0.0019 4352 | 15/54
43 h-m-p 0.0013 0.0373 44.6466 ++YYYYYC 3139.678501 5 0.0208 4455 | 15/54
44 h-m-p 0.0004 0.0019 397.7175 CCCC 3137.974363 3 0.0005 4557 | 15/54
45 h-m-p 0.0029 0.0144 16.8052 YC 3137.843167 1 0.0012 4654 | 15/54
46 h-m-p 0.0026 0.1954 7.6831 ++YCCC 3133.644531 3 0.0826 4757 | 15/54
47 h-m-p 0.0419 0.2093 1.1734 +YYYCCC 3129.664559 5 0.1569 4861 | 15/54
48 h-m-p 0.0419 0.2097 2.9446 YCCC 3126.127683 3 0.0809 4962 | 15/54
49 h-m-p 0.1585 1.0786 1.5020 CCYC 3123.586981 3 0.1615 5063 | 15/54
50 h-m-p 0.1448 1.2387 1.6750 CC 3122.563313 1 0.1451 5161 | 15/54
51 h-m-p 0.5918 2.9590 0.2797 CCC 3120.802184 2 0.6697 5261 | 15/54
52 h-m-p 0.4988 2.4942 0.3360 CYC 3119.341889 2 0.5429 5360 | 15/54
53 h-m-p 0.1677 0.8387 0.2585 CCCC 3118.799603 3 0.2705 5462 | 15/54
54 h-m-p 0.3732 4.8548 0.1874 +CCC 3117.082502 2 1.3781 5563 | 15/54
55 h-m-p 1.0759 7.9406 0.2400 CC 3116.089434 1 1.2344 5661 | 15/54
56 h-m-p 0.7570 8.0000 0.3914 YCCC 3114.957375 3 1.6441 5762 | 15/54
57 h-m-p 1.6000 8.0000 0.1829 YCC 3114.560500 2 1.2597 5861 | 15/54
58 h-m-p 0.9150 8.0000 0.2519 CCC 3114.352596 2 1.3364 5961 | 15/54
59 h-m-p 1.6000 8.0000 0.1734 CCC 3114.158575 2 1.3503 6061 | 15/54
60 h-m-p 1.4788 8.0000 0.1584 CCC 3114.021174 2 1.6165 6161 | 15/54
61 h-m-p 1.6000 8.0000 0.0729 CC 3113.956575 1 1.8411 6259 | 15/54
62 h-m-p 1.6000 8.0000 0.0151 C 3113.939416 0 1.6000 6355 | 15/54
63 h-m-p 1.2543 8.0000 0.0193 YC 3113.930515 1 2.2615 6452 | 15/54
64 h-m-p 1.6000 8.0000 0.0116 YC 3113.924677 1 3.0309 6549 | 15/54
65 h-m-p 1.6000 8.0000 0.0136 CC 3113.922605 1 1.9440 6647 | 15/54
66 h-m-p 1.6000 8.0000 0.0046 C 3113.921805 0 1.8182 6743 | 15/54
67 h-m-p 1.6000 8.0000 0.0026 C 3113.921599 0 1.6025 6839 | 15/54
68 h-m-p 1.6000 8.0000 0.0009 C 3113.921532 0 2.1940 6935 | 15/54
69 h-m-p 1.6000 8.0000 0.0007 C 3113.921516 0 1.7634 7031 | 15/54
70 h-m-p 1.6000 8.0000 0.0005 C 3113.921512 0 2.2801 7127 | 15/54
71 h-m-p 1.6000 8.0000 0.0001 C 3113.921511 0 2.0683 7223 | 15/54
72 h-m-p 1.6000 8.0000 0.0001 C 3113.921510 0 2.2499 7319 | 15/54
73 h-m-p 1.6000 8.0000 0.0000 C 3113.921510 0 2.4228 7415 | 15/54
74 h-m-p 1.6000 8.0000 0.0000 C 3113.921510 0 2.0619 7511 | 15/54
75 h-m-p 1.6000 8.0000 0.0000 C 3113.921510 0 2.0365 7607 | 15/54
76 h-m-p 1.6000 8.0000 0.0000 Y 3113.921510 0 2.6054 7703 | 15/54
77 h-m-p 1.6000 8.0000 0.0000 C 3113.921510 0 1.6000 7799 | 15/54
78 h-m-p 1.6000 8.0000 0.0000 C 3113.921510 0 2.2043 7895 | 15/54
79 h-m-p 1.6000 8.0000 0.0000 --Y 3113.921510 0 0.0250 7993
Out..
lnL = -3113.921510
7994 lfun, 31976 eigenQcodon, 1175118 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -3123.809592 S = -2981.204593 -151.396578
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 184 patterns 15:17
did 20 / 184 patterns 15:17
did 30 / 184 patterns 15:17
did 40 / 184 patterns 15:17
did 50 / 184 patterns 15:17
did 60 / 184 patterns 15:17
did 70 / 184 patterns 15:17
did 80 / 184 patterns 15:17
did 90 / 184 patterns 15:17
did 100 / 184 patterns 15:17
did 110 / 184 patterns 15:17
did 120 / 184 patterns 15:17
did 130 / 184 patterns 15:17
did 140 / 184 patterns 15:17
did 150 / 184 patterns 15:17
did 160 / 184 patterns 15:17
did 170 / 184 patterns 15:17
did 180 / 184 patterns 15:18
did 184 / 184 patterns 15:18end of tree file.
Time used: 15:18
Model 7: beta
TREE # 1
(12, 6, ((11, (((((((13, 1, 20, 25, 28), (22, 21, (26, 3)), ((27, (15, 23, 29)), (30, 2))), 7), 9), (16, 14)), (18, 24)), (17, (4, 5), 19))), 8, 10)); MP score: 423
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
38
0.046148 0.014745 0.050968 0.030230 0.072855 0.026261 0.050515 0.019777 0.011167 0.023387 0.020446 0.037175 0.072629 0.106623 0.053689 0.095012 0.091245 0.010006 0.098685 0.017740 0.094547 0.067507 0.051109 0.079708 0.067134 0.012930 0.087286 0.066531 0.073888 0.086740 0.093994 0.070740 0.085036 0.098266 0.024342 0.107643 0.020266 0.066705 0.084411 0.012341 0.104061 0.039387 0.030340 0.053834 0.099465 0.060705 0.030551 0.077154 0.062439 2.752684 0.501802 1.128039
ntime & nrate & np: 49 1 52
Bounds (np=52):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 7.949988
np = 52
lnL0 = -3765.127327
Iterating by ming2
Initial: fx= 3765.127327
x= 0.04615 0.01475 0.05097 0.03023 0.07285 0.02626 0.05051 0.01978 0.01117 0.02339 0.02045 0.03718 0.07263 0.10662 0.05369 0.09501 0.09124 0.01001 0.09869 0.01774 0.09455 0.06751 0.05111 0.07971 0.06713 0.01293 0.08729 0.06653 0.07389 0.08674 0.09399 0.07074 0.08504 0.09827 0.02434 0.10764 0.02027 0.06671 0.08441 0.01234 0.10406 0.03939 0.03034 0.05383 0.09946 0.06070 0.03055 0.07715 0.06244 2.75268 0.50180 1.12804
1 h-m-p 0.0000 0.0001 4215.4958 ++ 3377.497617 m 0.0001 109 | 1/52
2 h-m-p 0.0000 0.0000 834.8156 ++ 3364.384614 m 0.0000 216 | 2/52
3 h-m-p 0.0000 0.0000 13904.0681 ++ 3323.144313 m 0.0000 322 | 3/52
4 h-m-p 0.0000 0.0000 12322.5710 ++ 3322.395786 m 0.0000 427 | 4/52
5 h-m-p 0.0000 0.0001 1039.2786 ++ 3269.982926 m 0.0001 531 | 5/52
6 h-m-p 0.0000 0.0000 1408.9297 +YYCYYCC 3263.003761 6 0.0000 644 | 5/52
7 h-m-p 0.0000 0.0000 9346.1201 ++ 3255.471518 m 0.0000 746 | 6/52
8 h-m-p 0.0000 0.0000 2434.5131 ++ 3251.004141 m 0.0000 848 | 7/52
9 h-m-p 0.0000 0.0000 1427.8807 ++ 3249.052235 m 0.0000 949 | 8/52
10 h-m-p 0.0000 0.0000 1502.3508 ++ 3224.372805 m 0.0000 1049 | 9/52
11 h-m-p 0.0000 0.0000 966.4972 ++ 3217.567942 m 0.0000 1148 | 10/52
12 h-m-p 0.0000 0.0000 8490.2114 ++ 3214.945200 m 0.0000 1246 | 11/52
13 h-m-p 0.0000 0.0000 16996.8078 ++ 3197.653783 m 0.0000 1343 | 12/52
14 h-m-p 0.0000 0.0000 15308.6217 ++ 3197.145200 m 0.0000 1439 | 13/52
15 h-m-p 0.0000 0.0000 4642.6499 ++ 3196.166931 m 0.0000 1534 | 14/52
16 h-m-p 0.0000 0.0000 732.5164 ++ 3193.458945 m 0.0000 1628 | 15/52
17 h-m-p 0.0000 0.0007 429.3043 +++ 3162.439016 m 0.0007 1722 | 15/52
18 h-m-p 0.0000 0.0002 573.2035 YCYC 3158.885303 3 0.0001 1818 | 15/52
19 h-m-p 0.0000 0.0001 325.6077 +YYCC 3157.263668 3 0.0001 1915 | 15/52
20 h-m-p 0.0001 0.0007 108.7889 YCCC 3155.699888 3 0.0003 2012 | 15/52
21 h-m-p 0.0001 0.0007 223.2301 YC 3155.142738 1 0.0001 2105 | 15/52
22 h-m-p 0.0001 0.0009 114.4856 YCCC 3154.149043 3 0.0003 2202 | 15/52
23 h-m-p 0.0001 0.0006 127.9744 CCCC 3153.557344 3 0.0002 2300 | 15/52
24 h-m-p 0.0002 0.0011 58.0492 CCCC 3153.239870 3 0.0002 2398 | 15/52
25 h-m-p 0.0001 0.0008 130.4822 +YCCC 3152.369357 3 0.0003 2496 | 15/52
26 h-m-p 0.0002 0.0010 112.6430 YCCC 3151.361910 3 0.0004 2593 | 15/52
27 h-m-p 0.0002 0.0018 291.5226 +YCC 3148.978543 2 0.0004 2689 | 15/52
28 h-m-p 0.0003 0.0017 132.5054 YCCC 3147.203289 3 0.0007 2786 | 15/52
29 h-m-p 0.0011 0.0055 59.2696 CCC 3146.112352 2 0.0011 2882 | 15/52
30 h-m-p 0.0012 0.0061 50.7966 YCCC 3145.411988 3 0.0008 2979 | 15/52
31 h-m-p 0.0030 0.0272 14.0498 YCC 3145.216492 2 0.0012 3074 | 15/52
32 h-m-p 0.0007 0.0043 24.0157 YCCC 3144.702109 3 0.0017 3171 | 15/52
33 h-m-p 0.0006 0.0081 61.5867 YC 3143.663301 1 0.0014 3264 | 15/52
34 h-m-p 0.0006 0.0031 63.8130 YCCC 3142.749850 3 0.0013 3361 | 15/52
35 h-m-p 0.0009 0.0061 94.9162 CCCC 3141.744964 3 0.0010 3459 | 15/52
36 h-m-p 0.0021 0.0106 26.8291 YCC 3141.537325 2 0.0009 3554 | 15/52
37 h-m-p 0.0017 0.0118 14.7346 CCC 3141.306626 2 0.0018 3650 | 15/52
38 h-m-p 0.0017 0.0084 15.8885 YC 3141.181229 1 0.0009 3743 | 15/52
39 h-m-p 0.0019 0.0131 7.7960 YCCC 3140.792943 3 0.0040 3840 | 15/52
40 h-m-p 0.0015 0.0074 11.8634 CCCC 3140.468410 3 0.0018 3938 | 15/52
41 h-m-p 0.0007 0.0033 23.7959 +YCYCC 3139.502321 4 0.0019 4037 | 15/52
42 h-m-p 0.0040 0.0332 11.6186 YCCC 3137.934124 3 0.0070 4134 | 15/52
43 h-m-p 0.0010 0.0048 51.1834 CCCC 3136.408904 3 0.0013 4232 | 15/52
44 h-m-p 0.0099 0.1763 6.8579 +CYCCCC 3130.513866 5 0.0606 4334 | 15/52
45 h-m-p 0.0416 0.2082 5.2249 YCY 3128.905736 2 0.0718 4429 | 15/52
46 h-m-p 0.3810 1.9048 0.5197 CCCCC 3125.848735 4 0.5151 4529 | 15/52
47 h-m-p 0.2154 1.0770 0.7941 YCCC 3124.311949 3 0.1089 4626 | 15/52
48 h-m-p 0.1290 0.6452 0.3015 YCCC 3123.291783 3 0.2484 4723 | 15/52
49 h-m-p 0.1653 0.8265 0.1622 YCCC 3121.645914 3 0.3952 4820 | 15/52
50 h-m-p 0.6666 4.2665 0.0962 YCY 3119.028319 2 1.1738 4915 | 15/52
51 h-m-p 0.4518 2.2589 0.1068 YCCC 3117.394003 3 0.9463 5012 | 15/52
52 h-m-p 0.4122 2.0611 0.0853 +YCCC 3115.876122 3 1.1473 5110 | 15/52
53 h-m-p 1.3725 6.8627 0.0518 YCCCC 3115.140499 4 0.8361 5209 | 15/52
54 h-m-p 0.8653 8.0000 0.0501 YCC 3114.599749 2 1.4783 5304 | 15/52
55 h-m-p 1.4463 7.2314 0.0289 CCC 3114.409591 2 1.4792 5400 | 15/52
56 h-m-p 1.6000 8.0000 0.0095 CC 3114.352859 1 2.0081 5494 | 15/52
57 h-m-p 1.6000 8.0000 0.0058 CC 3114.327559 1 2.1039 5588 | 15/52
58 h-m-p 1.6000 8.0000 0.0021 YC 3114.300049 1 2.9228 5681 | 15/52
59 h-m-p 1.6000 8.0000 0.0032 CC 3114.271014 1 2.5169 5775 | 15/52
60 h-m-p 1.6000 8.0000 0.0033 CC 3114.259255 1 1.8342 5869 | 15/52
61 h-m-p 1.6000 8.0000 0.0014 CC 3114.257006 1 1.9711 5963 | 15/52
62 h-m-p 1.6000 8.0000 0.0010 CC 3114.256288 1 2.3021 6057 | 15/52
63 h-m-p 1.6000 8.0000 0.0005 YC 3114.255853 1 2.7747 6150 | 15/52
64 h-m-p 1.6000 8.0000 0.0002 YC 3114.255547 1 3.2912 6243 | 15/52
65 h-m-p 1.6000 8.0000 0.0004 C 3114.255442 0 2.0203 6335 | 15/52
66 h-m-p 1.6000 8.0000 0.0002 C 3114.255405 0 2.4127 6427 | 15/52
67 h-m-p 1.6000 8.0000 0.0001 Y 3114.255386 0 2.6352 6519 | 15/52
68 h-m-p 1.6000 8.0000 0.0001 +Y 3114.255364 0 4.6652 6612 | 15/52
69 h-m-p 1.6000 8.0000 0.0001 Y 3114.255345 0 2.6974 6704 | 15/52
70 h-m-p 1.6000 8.0000 0.0001 C 3114.255336 0 2.3381 6796 | 15/52
71 h-m-p 1.6000 8.0000 0.0001 C 3114.255334 0 2.4116 6888 | 15/52
72 h-m-p 1.6000 8.0000 0.0000 C 3114.255333 0 2.4502 6980 | 15/52
73 h-m-p 1.6000 8.0000 0.0000 Y 3114.255333 0 3.1440 7072 | 15/52
74 h-m-p 1.6000 8.0000 0.0000 +Y 3114.255332 0 4.9817 7165 | 15/52
75 h-m-p 1.6000 8.0000 0.0000 C 3114.255331 0 2.4605 7257 | 15/52
76 h-m-p 1.6000 8.0000 0.0000 C 3114.255331 0 1.8155 7349 | 15/52
77 h-m-p 1.6000 8.0000 0.0000 C 3114.255331 0 1.7347 7441 | 15/52
78 h-m-p 1.6000 8.0000 0.0000 C 3114.255331 0 1.8474 7533 | 15/52
79 h-m-p 1.6000 8.0000 0.0000 Y 3114.255331 0 1.1002 7625 | 15/52
80 h-m-p 1.6000 8.0000 0.0000 ---------------Y 3114.255331 0 0.0000 7732
Out..
lnL = -3114.255331
7733 lfun, 85063 eigenQcodon, 3789170 P(t)
end of tree file.
Time used: 44:36
Model 8: beta&w>1
TREE # 1
(12, 6, ((11, (((((((13, 1, 20, 25, 28), (22, 21, (26, 3)), ((27, (15, 23, 29)), (30, 2))), 7), 9), (16, 14)), (18, 24)), (17, (4, 5), 19))), 8, 10)); MP score: 423
1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
38
0.059460 0.034026 0.043081 0.070750 0.041039 0.062481 0.102035 0.099698 0.067149 0.022582 0.023082 0.066260 0.051629 0.074288 0.034588 0.091573 0.048237 0.077945 0.102479 0.062779 0.090630 0.058217 0.010212 0.082463 0.036942 0.083942 0.076935 0.020717 0.029882 0.106086 0.062262 0.099537 0.058299 0.070998 0.081117 0.014226 0.081156 0.101138 0.027064 0.071497 0.049834 0.010477 0.077571 0.098968 0.039718 0.096753 0.029658 0.055723 0.076998 2.463536 0.900000 0.377645 1.793328 1.300000
ntime & nrate & np: 49 2 54
Bounds (np=54):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 8.827623
np = 54
lnL0 = -3562.325501
Iterating by ming2
Initial: fx= 3562.325501
x= 0.05946 0.03403 0.04308 0.07075 0.04104 0.06248 0.10204 0.09970 0.06715 0.02258 0.02308 0.06626 0.05163 0.07429 0.03459 0.09157 0.04824 0.07794 0.10248 0.06278 0.09063 0.05822 0.01021 0.08246 0.03694 0.08394 0.07693 0.02072 0.02988 0.10609 0.06226 0.09954 0.05830 0.07100 0.08112 0.01423 0.08116 0.10114 0.02706 0.07150 0.04983 0.01048 0.07757 0.09897 0.03972 0.09675 0.02966 0.05572 0.07700 2.46354 0.90000 0.37765 1.79333 1.30000
1 h-m-p 0.0000 0.0001 2333.4180 ++ 3393.951052 m 0.0001 113 | 1/54
2 h-m-p 0.0000 0.0001 999.4634 ++ 3313.243667 m 0.0001 224 | 2/54
3 h-m-p 0.0000 0.0000 5888.7665 ++ 3297.452801 m 0.0000 334 | 3/54
4 h-m-p 0.0000 0.0000 7317.1969 ++ 3293.773584 m 0.0000 443 | 4/54
5 h-m-p 0.0000 0.0000 975.7537 ++ 3280.457502 m 0.0000 551 | 5/54
6 h-m-p 0.0000 0.0001 638.8294 +CYYYYCCCC 3256.025683 8 0.0001 672 | 5/54
7 h-m-p 0.0000 0.0000 10046.3819 ++ 3252.174621 m 0.0000 778 | 6/54
8 h-m-p 0.0000 0.0000 788.8544 ++ 3246.037460 m 0.0000 884 | 7/54
9 h-m-p 0.0000 0.0000 818.7096 ++ 3239.420151 m 0.0000 989 | 8/54
10 h-m-p 0.0000 0.0000 1920.8498 ++ 3231.412605 m 0.0000 1093 | 9/54
11 h-m-p 0.0000 0.0000 5084.1205 ++ 3226.252179 m 0.0000 1196 | 10/54
12 h-m-p 0.0000 0.0000 79558.7620 ++ 3213.433353 m 0.0000 1298 | 11/54
13 h-m-p 0.0000 0.0000 2833.7043 ++ 3213.109987 m 0.0000 1399 | 12/54
14 h-m-p 0.0000 0.0000 1487.4919 ++ 3200.126189 m 0.0000 1499 | 13/54
15 h-m-p 0.0000 0.0000 1619.9502 ++ 3197.645409 m 0.0000 1598 | 14/54
16 h-m-p 0.0000 0.0000 1284.3198 ++ 3195.465460 m 0.0000 1696 | 15/54
17 h-m-p 0.0000 0.0002 285.8187 +YCCYC 3187.296082 4 0.0002 1801 | 15/54
18 h-m-p 0.0000 0.0000 556.1662 +YCYCC 3186.531962 4 0.0000 1904 | 15/54
19 h-m-p 0.0000 0.0001 476.0919 +CCCC 3183.916018 3 0.0001 2007 | 15/54
20 h-m-p 0.0000 0.0002 862.6313 YCCCC 3179.405013 4 0.0001 2110 | 15/54
21 h-m-p 0.0002 0.0009 196.7292 YCCCC 3174.323977 4 0.0004 2213 | 15/54
22 h-m-p 0.0002 0.0008 135.6780 YCCCC 3172.590803 4 0.0003 2316 | 15/54
23 h-m-p 0.0008 0.0039 49.1452 YC 3170.710058 1 0.0015 2413 | 15/54
24 h-m-p 0.0004 0.0022 157.1925 YCYCCC 3166.183300 5 0.0011 2517 | 15/54
25 h-m-p 0.0001 0.0003 277.5370 +YYYCCC 3164.378367 5 0.0002 2621 | 15/54
26 h-m-p 0.0001 0.0003 316.0420 CCCC 3163.796900 3 0.0001 2723 | 15/54
27 h-m-p 0.0001 0.0015 214.1924 +CCCC 3161.394591 3 0.0005 2826 | 15/54
28 h-m-p 0.0013 0.0063 51.8628 YYC 3160.455268 2 0.0010 2924 | 15/54
29 h-m-p 0.0004 0.0022 73.8736 CCCCC 3159.610558 4 0.0006 3028 | 15/54
30 h-m-p 0.0004 0.0022 67.3166 +YCCC 3157.847478 3 0.0012 3130 | 15/54
31 h-m-p 0.0002 0.0008 100.1519 +YYCYC 3156.474908 4 0.0005 3232 | 15/54
32 h-m-p 0.0005 0.0041 113.8048 YC 3154.307719 1 0.0010 3329 | 15/54
33 h-m-p 0.0008 0.0041 129.0569 YCCC 3150.563410 3 0.0015 3430 | 15/54
34 h-m-p 0.0012 0.0060 66.7417 CCC 3149.391512 2 0.0011 3530 | 15/54
35 h-m-p 0.0013 0.0067 34.9263 YCC 3148.915157 2 0.0010 3629 | 15/54
36 h-m-p 0.0018 0.0148 20.5941 CCC 3148.399236 2 0.0018 3729 | 15/54
37 h-m-p 0.0015 0.0192 25.2915 YCCC 3147.273267 3 0.0030 3830 | 15/54
38 h-m-p 0.0022 0.0124 35.6976 YC 3146.780153 1 0.0012 3927 | 15/54
39 h-m-p 0.0031 0.0183 13.7275 CC 3146.662912 1 0.0011 4025 | 15/54
40 h-m-p 0.0022 0.0628 7.0605 +YCC 3146.230319 2 0.0062 4125 | 15/54
41 h-m-p 0.0017 0.0096 26.5503 YCCC 3145.191773 3 0.0031 4226 | 15/54
42 h-m-p 0.0027 0.0137 23.8896 YC 3144.887998 1 0.0013 4323 | 15/54
43 h-m-p 0.0042 0.0698 7.3581 YCCC 3143.988075 3 0.0095 4424 | 15/54
44 h-m-p 0.0013 0.0116 54.6908 +YCCCC 3139.398156 4 0.0053 4528 | 15/54
45 h-m-p 0.0054 0.0271 10.6823 CCC 3139.295484 2 0.0013 4628 | 15/54
46 h-m-p 0.0051 0.5058 2.6901 ++YCCCC 3130.736495 4 0.1751 4733 | 15/54
47 h-m-p 0.1240 0.6199 2.5636 CCCC 3126.023447 3 0.1840 4835 | 15/54
48 h-m-p 0.0698 0.3488 1.3549 +YYCC 3119.429932 3 0.2546 4936 | 15/54
49 h-m-p 0.2316 1.3452 1.4898 YCCC 3115.866345 3 0.3774 5037 | 15/54
50 h-m-p 0.0853 0.4265 4.5631 CCCC 3112.527143 3 0.1282 5139 | 15/54
51 h-m-p 0.4123 2.1760 1.4187 YCCCC 3107.320183 4 0.8190 5242 | 15/54
52 h-m-p 1.1923 5.9614 0.2414 CYCC 3102.693305 3 1.4366 5343 | 15/54
53 h-m-p 0.5877 2.9386 0.1926 CCCC 3100.924118 3 1.0720 5445 | 15/54
54 h-m-p 0.6390 3.1951 0.1380 CYC 3099.967395 2 0.6718 5544 | 15/54
55 h-m-p 0.6377 3.1883 0.0978 CCC 3099.386300 2 0.8291 5644 | 15/54
56 h-m-p 1.3453 8.0000 0.0603 YCC 3098.726041 2 2.3535 5743 | 15/54
57 h-m-p 0.9475 8.0000 0.1497 YC 3098.167182 1 2.3630 5840 | 15/54
58 h-m-p 1.6000 8.0000 0.1292 CYC 3097.883087 2 1.5516 5939 | 15/54
59 h-m-p 1.6000 8.0000 0.0654 YCC 3097.756728 2 1.2927 6038 | 15/54
60 h-m-p 1.6000 8.0000 0.0235 YCC 3097.716136 2 1.1555 6137 | 15/54
61 h-m-p 1.6000 8.0000 0.0161 CC 3097.701607 1 1.3187 6235 | 15/54
62 h-m-p 1.6000 8.0000 0.0040 CC 3097.696571 1 1.8217 6333 | 15/54
63 h-m-p 1.6000 8.0000 0.0016 YC 3097.694703 1 2.5608 6430 | 15/54
64 h-m-p 1.6000 8.0000 0.0022 CC 3097.693667 1 2.4492 6528 | 15/54
65 h-m-p 1.6000 8.0000 0.0015 C 3097.693434 0 1.7971 6624 | 15/54
66 h-m-p 1.6000 8.0000 0.0007 Y 3097.693303 0 3.0699 6720 | 15/54
67 h-m-p 1.6000 8.0000 0.0009 YC 3097.693139 1 3.3731 6817 | 15/54
68 h-m-p 1.6000 8.0000 0.0004 Y 3097.693025 0 2.8444 6913 | 15/54
69 h-m-p 1.6000 8.0000 0.0006 Y 3097.692974 0 2.7962 7009 | 15/54
70 h-m-p 1.6000 8.0000 0.0004 Y 3097.692932 0 3.3818 7105 | 15/54
71 h-m-p 1.6000 8.0000 0.0004 Y 3097.692894 0 3.3551 7201 | 15/54
72 h-m-p 1.6000 8.0000 0.0004 Y 3097.692865 0 3.0337 7297 | 15/54
73 h-m-p 1.6000 8.0000 0.0002 C 3097.692845 0 2.4314 7393 | 15/54
74 h-m-p 1.6000 8.0000 0.0003 C 3097.692841 0 1.9190 7489 | 15/54
75 h-m-p 1.6000 8.0000 0.0001 C 3097.692840 0 1.6705 7585 | 15/54
76 h-m-p 1.6000 8.0000 0.0000 C 3097.692840 0 2.0877 7681 | 15/54
77 h-m-p 1.6000 8.0000 0.0000 C 3097.692840 0 2.1187 7777 | 15/54
78 h-m-p 1.0489 8.0000 0.0000 Y 3097.692840 0 2.4718 7873 | 15/54
79 h-m-p 1.6000 8.0000 0.0000 C 3097.692840 0 1.8769 7969 | 15/54
80 h-m-p 1.5189 8.0000 0.0000 C 3097.692840 0 2.2319 8065 | 15/54
81 h-m-p 1.6000 8.0000 0.0000 C 3097.692840 0 0.4444 8161 | 15/54
82 h-m-p 0.6187 8.0000 0.0000 ----------------.. | 15/54
83 h-m-p 0.0160 8.0000 0.0011 -------------
Out..
lnL = -3097.692840
8379 lfun, 100548 eigenQcodon, 4516281 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -3115.195073 S = -2984.176577 -157.037049
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 184 patterns 1:19:03
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did 50 / 184 patterns 1:19:03
did 60 / 184 patterns 1:19:04
did 70 / 184 patterns 1:19:04
did 80 / 184 patterns 1:19:04
did 90 / 184 patterns 1:19:04
did 100 / 184 patterns 1:19:04
did 110 / 184 patterns 1:19:04
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did 150 / 184 patterns 1:19:05
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did 184 / 184 patterns 1:19:06end of tree file.
Time used: 1:19:06
The loglikelihoods for models M1, M2, M7 and M8 are -3122.166428 -3113.921510 -3114.255331 -3097.692840 respectively
The loglikelihood for model M2a is significantly different from that for M1a. Twice the difference is 16.489836
The loglikelihood for model M8 is significantly different from that for M7. Twice the difference is 33.124982
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCAMQ-DSGLQ-C
80F_M_AJO27018_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 --------------------------MKYILFLLACIIACVYGE--RYCAMQSATSTS-C
Cat2_day21_deletion_NA_AMD11158_1_2013_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYVLLMFACIIACVCGE--RYCAMQGASTS--C
TGEV_Mex_145_2008_M_ASV64362_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCAMKSDTDLS-C
HE_1_NA_APQ31246_1_2015_China_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCAMKSDTDLS-C
TGEV_USA_Illinois146_2008_M_ASV64371_1_2008_04_09_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAIACACGE--RYCAMQ-DTGLS-C
WSU_79_1683_NA_AFH58016_1_NA_NA_Unknown_Alphacoronavirus_1 MLTMPIRISCELKHTTPMKHSLFELNKMKILLILACAVACVYGEQIRYCAMQ-ETGLS-C
TGEV_USA_Illinois139_2006_M_ASV64308_1_2006_11_17_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAIACACGE--RYCAMQ-DTGLS-C
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1 --------------------------MMKILLI-ACAIACAYGE--RYCAMSDESSSTSC
TGEV_USA_NorthCarolina140_2007_M_ASV64317_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAIVCACGE--RYCAMQ-DTGLS-C
TGEV_USA_Minnesota152_2014_M_ASV64424_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAMACACGE--RYCAMQ-DTGLS-C
TGEV_USA_Minnesota148_2013_M_ASV64388_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAIACACGE--RYCAMQ-DTGLS-C
79_1146_M_YP_004070198_1_NA_USA_Unknown_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCAMQ-DSGLQ-C
HLJ_073_NA_ASB15761_1_2016_07_01_China_Dog_Alphacoronavirus_1 -----------------MKHSSFELNKMKILLILACAVACVYGEQIRYCAMQ-ETGLS-C
UNKNOWN_HQ012372_NA_ADL71502_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKHVLFIFACIIACAFGE--RYCAMQDAQSTT-C
A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1 ---------------------------MKILLLLACAIACVCGE--RYCAMQ-DTGFS-C
AYU_NA_AEM55570_1_2009_China_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCAMKSDTDLS-C
CB_05_ORF5_AKA65834_1_2005_Italy_Dog_Alphacoronavirus_1 ---------------------------MKILLVLACAIACACGE--RYCAMKSDSDTS-C
WH_1_M_ADY39744_1_NA_China_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCAMKSDTDLS-C
FCoVWSU791146_P8_M_AGZ84531_1_2011_USA_Cat_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCAMQ-DSGLQ-C
Cat1_day7_NA_AMD11147_1_2013_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYVLLMFACIIACVCGE--RYCAMQGASTS--C
Cat1_day28_withoutdeletion_NA_AMD11202_1_2013_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYVLLMFACIIACVCGE--RYCAMQGASTS--C
UU21_NA_ADL71470_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKYVLFIFACIIACAFGE--RYCAMQEAKSTT-C
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1 MPMMPIRILCELKHITLMKHSLFELNKMKILLILACAIACACGE--RYCAMKSDSETS-C
FIPV_79_1146_NA_AAY32598_1_NA_NA_Cat_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCAMQ-DSGLQ-C
Cat2_day21_withoutdeletion_NA_AMD11169_1_2013_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYVLLMFACIIACVCGE--RYCAMQGASTS--C
UG_FH8_NA_ASU62493_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYILFILACIIACAFGE--RYCAMQDQSSIT-C
DF_2_R3i_M_AFH55116_1_NA_NA_Cat_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCAMQ-DSGLQ-C
UU22_NA_ADC35466_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKHVLFIFACIIACAFGE--RYCAMQDARSTT-C
FCoV_C1Je_NA_ABI14450_1_NA_NA_Unknown_Alphacoronavirus_1 --------------------------MKYVLLILACIIACVCGE--RYCAMQY-HSTS-C
:*:: ** :.*. ** *****. *
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1 INGTN-SRCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMW
80F_M_AJO27018_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 INGTDHNSCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMW
Cat2_day21_deletion_NA_AMD11158_1_2013_Belgium_Cat_Alphacoronavirus_1 INGTN-SECQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMW
TGEV_Mex_145_2008_M_ASV64362_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 RNSTA-SDCESCFNGGDLIWHLANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMW
HE_1_NA_APQ31246_1_2015_China_Swine_Alphacoronavirus_1 RNSTA-SDCESCFNGGDLIWHLANWNFSRSIILIVFITVLQYGRPQFSWFVYGIKMLIMW
TGEV_USA_Illinois146_2008_M_ASV64371_1_2008_04_09_USA_Unknown_Alphacoronavirus_1 RNSTV-SDCESCFNGGDLIWHLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMW
WSU_79_1683_NA_AFH58016_1_NA_NA_Unknown_Alphacoronavirus_1 RNGTA-SDCESCFNGGDLIWHLANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMW
TGEV_USA_Illinois139_2006_M_ASV64308_1_2006_11_17_USA_Unknown_Alphacoronavirus_1 RNSTV-SDCESCFNGGDLIWHLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMW
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1 RNSTSGDTCASCINSGDLIWHLANWNFSWSVILIIFITVLQYGRPQFSWFVYGIKMLIMW
TGEV_USA_NorthCarolina140_2007_M_ASV64317_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 RNSTV-SDCESCFNGGDLIWHLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMW
TGEV_USA_Minnesota152_2014_M_ASV64424_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 RNSTV-SDCESCFNGGDLIWHLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMW
TGEV_USA_Minnesota148_2013_M_ASV64388_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 RNSTV-SDCESCFNGGDLIWHLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMW
79_1146_M_YP_004070198_1_NA_USA_Unknown_Alphacoronavirus_1 INGTN-SRCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMW
HLJ_073_NA_ASB15761_1_2016_07_01_China_Dog_Alphacoronavirus_1 RNGTA-SDCESCFNGGDLIWHLANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMW
UNKNOWN_HQ012372_NA_ADL71502_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 INGTESNSCQTCFERGDLIWHLANWNFSWSVILIIFITVLQYGRPQFSWLVYGIKMLIMW
A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1 RNSST-TDCESCFNGGDLIWHLANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMW
AYU_NA_AEM55570_1_2009_China_Swine_Alphacoronavirus_1 RNSTA-SDCESCFNGGDLIWHLANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMW
CB_05_ORF5_AKA65834_1_2005_Italy_Dog_Alphacoronavirus_1 RNGTT-TDCESCFNGGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWFVYGIKMLIMW
WH_1_M_ADY39744_1_NA_China_Swine_Alphacoronavirus_1 RNSTA-SDCESCFNGGDLIWHLANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMW
FCoVWSU791146_P8_M_AGZ84531_1_2011_USA_Cat_Alphacoronavirus_1 INGTN-SRCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMW
Cat1_day7_NA_AMD11147_1_2013_Belgium_Cat_Alphacoronavirus_1 INGTN-SECQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMW
Cat1_day28_withoutdeletion_NA_AMD11202_1_2013_Belgium_Cat_Alphacoronavirus_1 INGTN-SECQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMW
UU21_NA_ADL71470_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 INGTEPGSCQTCFERGDLIWHLANWNFSWSVILIIFITVLQYGRPQFSWLVYGIKMLIMW
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1 RNSTA-TDCESCFNGGDLIWHLANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMW
FIPV_79_1146_NA_AAY32598_1_NA_NA_Cat_Alphacoronavirus_1 INGTN-SRCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMW
Cat2_day21_withoutdeletion_NA_AMD11169_1_2013_Belgium_Cat_Alphacoronavirus_1 INGTN-SECQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMW
UG_FH8_NA_ASU62493_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 INGTD-SSCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMW
DF_2_R3i_M_AFH55116_1_NA_NA_Cat_Alphacoronavirus_1 INGTN-SRCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMW
UU22_NA_ADC35466_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 INGTESDSCQTCFERGDLIWHLANWNFSWSVILIIFITVLQYGRPQFSWLVYGIKMLIMW
FCoV_C1Je_NA_ABI14450_1_NA_NA_Unknown_Alphacoronavirus_1 INGTETNSCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMW
*.: * :*:: ************* *:***:**************:**********
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSF
80F_M_AJO27018_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYEVSRYVMFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSF
Cat2_day21_deletion_NA_AMD11158_1_2013_Belgium_Cat_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSF
TGEV_Mex_145_2008_M_ASV64362_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 LLWPVVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSF
HE_1_NA_APQ31246_1_2015_China_Swine_Alphacoronavirus_1 LLWPVVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSF
TGEV_USA_Illinois146_2008_M_ASV64371_1_2008_04_09_USA_Unknown_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSF
WSU_79_1683_NA_AFH58016_1_NA_NA_Unknown_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYEVSRYVMFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSF
TGEV_USA_Illinois139_2006_M_ASV64308_1_2006_11_17_USA_Unknown_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSF
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYEVSRYVMFGFSIAGAVITFALWIMYFVRSIQLYRRTKSWWSF
TGEV_USA_NorthCarolina140_2007_M_ASV64317_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSF
TGEV_USA_Minnesota152_2014_M_ASV64424_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSF
TGEV_USA_Minnesota148_2013_M_ASV64388_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSF
79_1146_M_YP_004070198_1_NA_USA_Unknown_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSF
HLJ_073_NA_ASB15761_1_2016_07_01_China_Dog_Alphacoronavirus_1 LLWPIVLALTTFNAYSEYEVSRYVMFGFSIAGAIITFVLWIMYFVRSIQLYRRTKSWWSF
UNKNOWN_HQ012372_NA_ADL71502_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSWWSF
A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYEVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSF
AYU_NA_AEM55570_1_2009_China_Swine_Alphacoronavirus_1 LLWPVVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSF
CB_05_ORF5_AKA65834_1_2005_Italy_Dog_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYEVSRYVMFGFSVAGAIVTFILWIMYFVRSIQLYRRTKSWWSF
WH_1_M_ADY39744_1_NA_China_Swine_Alphacoronavirus_1 LLWPVVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSF
FCoVWSU791146_P8_M_AGZ84531_1_2011_USA_Cat_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSF
Cat1_day7_NA_AMD11147_1_2013_Belgium_Cat_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSF
Cat1_day28_withoutdeletion_NA_AMD11202_1_2013_Belgium_Cat_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSF
UU21_NA_ADL71470_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSCWSF
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYEVSRYVMFGFSVAGAIVTFILWIMYFIRSIQLYRRTKSWWSF
FIPV_79_1146_NA_AAY32598_1_NA_NA_Cat_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSF
Cat2_day21_withoutdeletion_NA_AMD11169_1_2013_Belgium_Cat_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSF
UG_FH8_NA_ASU62493_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYNVSRYVMFGFSVAGAIVTFALWVMYFVRSIQLYRRTKSWWSF
DF_2_R3i_M_AFH55116_1_NA_NA_Cat_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSF
UU22_NA_ADC35466_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYQVSRYVMFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSWWSF
FCoV_C1Je_NA_ABI14450_1_NA_NA_Unknown_Alphacoronavirus_1 LLWPIVLALTIFNAYSEYKVSRYVMFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSF
****:***** *******:**********:***::** **:***:**:******** ***
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1 NPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIA
80F_M_AJO27018_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 NPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIA
Cat2_day21_deletion_NA_AMD11158_1_2013_Belgium_Cat_Alphacoronavirus_1 NPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIA
TGEV_Mex_145_2008_M_ASV64362_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 NPETKAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVA
HE_1_NA_APQ31246_1_2015_China_Swine_Alphacoronavirus_1 NPETKAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVA
TGEV_USA_Illinois146_2008_M_ASV64371_1_2008_04_09_USA_Unknown_Alphacoronavirus_1 NPETNAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVA
WSU_79_1683_NA_AFH58016_1_NA_NA_Unknown_Alphacoronavirus_1 NPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIL
TGEV_USA_Illinois139_2006_M_ASV64308_1_2006_11_17_USA_Unknown_Alphacoronavirus_1 NPETNAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVA
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1 NPETNAILCVSALGRSYVLPLEGTPTGVTLTLLSGNLYAEGFKMAGGMNIEHLPKYVMVA
TGEV_USA_NorthCarolina140_2007_M_ASV64317_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 NPETNAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVA
TGEV_USA_Minnesota152_2014_M_ASV64424_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 NPETNAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVA
TGEV_USA_Minnesota148_2013_M_ASV64388_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 NPETNAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVA
79_1146_M_YP_004070198_1_NA_USA_Unknown_Alphacoronavirus_1 NPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIA
HLJ_073_NA_ASB15761_1_2016_07_01_China_Dog_Alphacoronavirus_1 NPETNAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVA
UNKNOWN_HQ012372_NA_ADL71502_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 NPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIA
A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1 NPETNAILCVSALGRNYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVA
AYU_NA_AEM55570_1_2009_China_Swine_Alphacoronavirus_1 NPETKAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVA
CB_05_ORF5_AKA65834_1_2005_Italy_Dog_Alphacoronavirus_1 NPETNAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVA
WH_1_M_ADY39744_1_NA_China_Swine_Alphacoronavirus_1 NPETKAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVA
FCoVWSU791146_P8_M_AGZ84531_1_2011_USA_Cat_Alphacoronavirus_1 NPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIA
Cat1_day7_NA_AMD11147_1_2013_Belgium_Cat_Alphacoronavirus_1 NPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIA
Cat1_day28_withoutdeletion_NA_AMD11202_1_2013_Belgium_Cat_Alphacoronavirus_1 NPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIA
UU21_NA_ADL71470_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 NPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIA
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1 NPETNAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVA
FIPV_79_1146_NA_AAY32598_1_NA_NA_Cat_Alphacoronavirus_1 NPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIA
Cat2_day21_withoutdeletion_NA_AMD11169_1_2013_Belgium_Cat_Alphacoronavirus_1 NPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIA
UG_FH8_NA_ASU62493_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 NPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIDHLPKYVMIA
DF_2_R3i_M_AFH55116_1_NA_NA_Cat_Alphacoronavirus_1 NPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIA
UU22_NA_ADC35466_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 NPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIA
FCoV_C1Je_NA_ABI14450_1_NA_NA_Unknown_Alphacoronavirus_1 NPETNAILCVNVLGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMSGGLTIEHLPKYVMIA
****:*****..***.*****:*.*******************::**:.*::******:
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1 TPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
80F_M_AJO27018_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 TPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
Cat2_day21_deletion_NA_AMD11158_1_2013_Belgium_Cat_Alphacoronavirus_1 TPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHERLLHMV
TGEV_Mex_145_2008_M_ASV64362_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 LPSRTIVYILVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
HE_1_NA_APQ31246_1_2015_China_Swine_Alphacoronavirus_1 LPSRTIVYILVGKKLKASSATGWAYYVKSKAGDYSAEARTDNLSEQEKLLHMV
TGEV_USA_Illinois146_2008_M_ASV64371_1_2008_04_09_USA_Unknown_Alphacoronavirus_1 LPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
WSU_79_1683_NA_AFH58016_1_NA_NA_Unknown_Alphacoronavirus_1 -------------RLIEPSFTH-------------------------------
TGEV_USA_Illinois139_2006_M_ASV64308_1_2006_11_17_USA_Unknown_Alphacoronavirus_1 LPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1 LPSRTIVYTLVGKQLKASSATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
TGEV_USA_NorthCarolina140_2007_M_ASV64317_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 LPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
TGEV_USA_Minnesota152_2014_M_ASV64424_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 LPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
TGEV_USA_Minnesota148_2013_M_ASV64388_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 LPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
79_1146_M_YP_004070198_1_NA_USA_Unknown_Alphacoronavirus_1 TPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
HLJ_073_NA_ASB15761_1_2016_07_01_China_Dog_Alphacoronavirus_1 LPSRTIVYTLVGKQLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV
UNKNOWN_HQ012372_NA_ADL71502_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 TPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1 LPSRTIVYTLVGKQLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV
AYU_NA_AEM55570_1_2009_China_Swine_Alphacoronavirus_1 LPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQDKLLHMV
CB_05_ORF5_AKA65834_1_2005_Italy_Dog_Alphacoronavirus_1 LPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV
WH_1_M_ADY39744_1_NA_China_Swine_Alphacoronavirus_1 LPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV
FCoVWSU791146_P8_M_AGZ84531_1_2011_USA_Cat_Alphacoronavirus_1 TPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
Cat1_day7_NA_AMD11147_1_2013_Belgium_Cat_Alphacoronavirus_1 TPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
Cat1_day28_withoutdeletion_NA_AMD11202_1_2013_Belgium_Cat_Alphacoronavirus_1 TPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
UU21_NA_ADL71470_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 TPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1 LPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV
FIPV_79_1146_NA_AAY32598_1_NA_NA_Cat_Alphacoronavirus_1 TPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
Cat2_day21_withoutdeletion_NA_AMD11169_1_2013_Belgium_Cat_Alphacoronavirus_1 TPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHERLLHMV
UG_FH8_NA_ASU62493_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 TPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
DF_2_R3i_M_AFH55116_1_NA_NA_Cat_Alphacoronavirus_1 TPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
UU22_NA_ADC35466_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 TPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
FCoV_C1Je_NA_ABI14450_1_NA_NA_Unknown_Alphacoronavirus_1 TPSRTIVYTLVGKQLKVTTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
:* .: *
>171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGCTAATACTCGCGTGCATAATTGCATGCGTTTATGGTGAA------CGCTACTGTGCCATGCAA---GACAGTGGCTTGCAG---TGTATT------------AATGGCACAAAT---TCAAGATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTGTTCAGCTATATAGAAGAACCAAATCATGGTGGTCTTTTAATCCTGAGACTAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTGCTTCCCTTAGATGGTACTCCTACAGGTGTTACCCTTACTCTACTTTCAGGAAATCTATATGCTGAAGGTTTCAAAATGGCTGGTGGTTTAACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTACGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGACAATTTGAGTGAACATGAAAAATTATTACATATGGTG >80F_M_AJO27018_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGTTCTTACTTGCGTGCATAATTGCATGCGTTTATGGAGAA------CGTTATTGTGCCATGCAAAGTGCAACTTCTACAAGC---TGCATC------------AATGGCACTGACCACAACTCATGTCAAACTTGCTTCGAACGTGGTGATCTTATTTGGCATCTCGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATACGGCAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCGTACTCTGAGTACGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCATTATGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAGACTAATGCAATTCTCTGTGTTAATGCGTTGGGTAGAAGCTACGTCCTACCCCTTGATGGCACTCCTACGGGTGTCACTCTCACGTTACTTTCAGGAAACCTATATGCTGAAGGGTTTAAAATGGCTGGTGGTCTTACCATCGAGCACTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACCTTAGTTGGAAAACAGTTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTA >Cat2_day21_deletion_NA_AMD11158_1_2013_Belgium_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGCTCATGTTCGCGTGCATAATTGCATGCGTTTGTGGTGAA------CGATACTGTGCCATGCAAGGTGCAAGTACAAGC------TGCATC------------AATGGCACCAAC---TCAGAATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCCGTAATATTGATC------GTTTTTATAACAGTTTTACAATATGGAAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCCGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTCATAACGTTTGCACTCTGGATGATGTATTTTGTGAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTCAACCCTGAAACTAATGCAATTCTTTGTGTTAACGCACTGGGTAGAAGTTATGTTTTACCCCTTGATGGCACTCCTACAGGTGTCACTCTTACTTTGCTTTCAGGAAATCTATATGCTGAAGGTTTTAAGATGGCTGGTGGTCTTACCATCGAGCAATTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAATTAAAAGCAACTACTGCTACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAGATTATTACATATGGTG >TGEV_Mex_145_2008_M_ASV64362_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAATCCGATACAGATTTGTCA---TGTCGC------------AATAGTACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCGTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAAAGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACTATTGTCTACATACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >HE_1_NA_APQ31246_1_2015_China_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAATCCGATACAGATTTGTCA---TGTCGC------------AATAGTACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCCGGTCTATAATATTGATC------GTTTTTATAACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCGTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAAAGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACTATTGTCTACATACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAGCAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >TGEV_USA_Illinois146_2008_M_ASV64371_1_2008_04_09_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTGGCGTGTGCGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTCATGCTTCAACGGGGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGCTATATAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCTGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTCAAAATTGCTGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCATTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >WSU_79_1683_NA_AFH58016_1_NA_NA_Unknown_Alphacoronavirus_1 ATGCTTACGATGCCTATAAGAATTTCATGCGAATTAAAGCATACAACCCCGATGAAGCACTCCTTGTTTGAACTAAACAAAATGAAGATTTTGTTAATATTAGCGTGCGCAGTTGCATGCGTTTACGGGGAGCAAATAAGGTACTGTGCTATGCAA---GAGACTGGTTTGTCA---TGTCGC------------AATGGTACAGCA---TCTGATTGTGAGTCATGCTTCAATGGAGGTGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACGGTTCTACAATATGGTAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTTATTATGTGGCTATTATGGCCTATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATATGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACATTTGCACTTTGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAAACTAATGCAATTCTTTGTGTTAACGCGTTGGGTAGAAGCTATGTTTTGCCCCTTGATGGCACACCCACGGGTGTTACTCTCACGCTACTTTCAGGAAATCTATATGCTGAAGGTTTTAAAATGGCTGGTGGTCTCACCATTGAACATTTACCTAAATACGTCATGATTCTA---------------------------------------CGCCTAATAGAACCATCGTTTACACAT--------------------------------------------------------------------------------------------- >TGEV_USA_Illinois139_2006_M_ASV64308_1_2006_11_17_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTGGCGTGTGCGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTCATGCTTCAACGGGGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGCTATACAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCTGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTCAAAATTGCTGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCATTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGATGAAAATTTTGTTGATT---GCGTGTGCAATTGCATGCGCTTATGGAGAA------CGCTATTGTGCTATGAGTGATGAAAGTTCATCCACTTCTTGTCGC------------AATAGTACCAGTGGAGATACTTGTGCTTCATGTATTAACAGTGGTGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTGTAATATTGATT------ATTTTTATAACAGTGTTACAATATGGAAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTTATTATGTGGCTACTTTGGCCCATTGTTTTAGCTCTTACGATTTTTAATGCATACTCGGAATATGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTATCGCAGGTGCAGTTATTACATTTGCACTTTGGATTATGTATTTTGTAAGATCTATTCAGCTATATAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAATGCAATTCTTTGTGTTAGTGCGCTTGGAAGAAGCTATGTGCTTCCTCTTGAAGGTACACCAACTGGTGTCACTCTTACTTTGCTATCAGGAAATCTTTATGCTGAAGGATTTAAAATGGCTGGTGGAATGAACATCGAGCATTTACCAAAATACGTAATGGTCGCATTACCTAGTAGAACTATTGTCTACACACTTGTTGGAAAGCAATTGAAAGCAAGTAGTGCAACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCAAGAACTGACAATTTGAGTGAACATGAAAAATTATTACATATGGTA >TGEV_USA_NorthCarolina140_2007_M_ASV64317_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTGGCGTGTGCGATTGTATGCGCATGTGGAGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTCATGCTTCAACGGGGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGCTATACAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCTGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTCAAAATTGCTGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCATTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >TGEV_USA_Minnesota152_2014_M_ASV64424_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTGGCGTGTGCGATGGCATGCGCATGTGGGGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGCTATACAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCAGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTCAAAATTGCCGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCATTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >TGEV_USA_Minnesota148_2013_M_ASV64388_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTGATATTGGCGTGTGCGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGCAA---GACACAGGTTTGTCA---TGTCGC------------AATAGCACAGTG---TCTGATTGTGAGTCATGCTTCAACGGGGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------ATTTTTATTACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTTTCCAGGTATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGCTATATAGAAGGACTAAGTCCTGGTGGTCCTTCAACCCTGAAACTAATGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAGGGTGTGCCAACTGGTGTCACTCTAACTCTGCTTTCAGGGAATTTATACGCTGAAGGGTTCAAAATTGCTGGTGGTATGAACATCGACAATTTGCCAAAATATGTAATGGTTGCACTACCCAGCAGGACTATAGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >79_1146_M_YP_004070198_1_NA_USA_Unknown_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGCTAATACTCGCGTGCATAATTGCATGCGTTTATGGTGAA------CGCTACTGTGCCATGCAA---GACAGTGGCTTGCAG---TGTATT------------AATGGCACAAAT---TCAAGATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTGTTCAGCTATATAGAAGAACCAAATCATGGTGGTCTTTTAATCCTGAGACTAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTGCTTCCCTTAGATGGTACTCCTACAGGTGTTACCCTTACTCTACTTTCAGGAAATCTATATGCTGAAGGTTTCAAAATGGCTGGTGGTTTAACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTACGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGACAATTTGAGTGAACATGAAAAATTATTACATATGGTG >HLJ_073_NA_ASB15761_1_2016_07_01_China_Dog_Alphacoronavirus_1 ---------------------------------------------------ATGAAGCACTCCTCGTTTGAACTAAACAAAATGAAGATTTTGTTAATACTAGCGTGTGCAGTTGCATGCGTTTATGGGGAGCAAATAAGGTACTGTGCTATGCAA---GAGACTGGTTTGTCA---TGTCGC------------AATGGTACAGCA---TCTGATTGTGAGTCATGCTTCAATGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACGGTTCTACAATATGGTAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTTATTATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGACTTTTAATGCATACTCGGAATATGAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTATTACATTTGTACTTTGGATTATGTATTTTGTTAGATCCATTCAGTTATACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAGACTAACGCAATTCTATGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTTGAAGGTGTGCCAACTGGCGTCACTCTAACATTGCTCTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCTGGTGGTATGAACATCGACAATTTACCAAAATATGTAATGGTTGCATTACCTAGCAGGACCATTGTCTACACACTTGTTGGCAAGCAATTGAAAGCAAGTAGTGCAACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGATGCAAGAACTGACAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >UNKNOWN_HQ012372_NA_ADL71502_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGCACGTTTTGTTCATATTCGCTTGCATAATTGCATGCGCCTTTGGTGAA------CGTTACTGTGCTATGCAAGATGCGCAATCCACAACT---TGCATC------------AATGGCACCGAGTCGAATTCATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------ATCTTTATAACAGTGCTACAATATGGTAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTGTTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTATCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTATCGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAAACCAATGCTATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTACTTCCTCTTGATGGCACTCCTACGGGTGTGACTCTCACTCTACTTTCAGGGAATCTATATGCTGAAGGCTTTAAAATGGCTGGTGGTCTTACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACGCCTAGTAGAACCATCGTCTACACACTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTACTATTAGCGTGTGCAATTGCATGCGTTTGTGGAGAA------AGGTACTGTGCTATGCAA---GACACTGGTTTTTCT---TGCCGT------------AACAGCAGTACC---ACTGATTGTGAGTCATGCTTCAATGGAGGTGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACGGTTCTACAATATGGTAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTCATTATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCTGAATACGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTTTGGATTATGTATTTTGTAAGATCCATTCAGTTATACAGAAGGACTAAGTCTTGGTGGTCCTTCAACCCTGAGACTAATGCAATTCTTTGCGTTAGTGCTTTAGGAAGAAACTACGTGCTTCCTCTTGAAGGTGTGCCAACTGGTGTCACTTTAACATTGCTTTCAGGGAATTTGTATGCTGAAGGTTTTAAAATTGCTGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACCATTGTCTACACACTTGTTGGCAAGCAATTGAAAGCAAGTAGTGCAACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGATGCAAGAACTGACAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >AYU_NA_AEM55570_1_2009_China_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAATCCGATACAGATTTGTCA---TGTCGC------------AATAGTACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCGTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAAAGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACTATTGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGATAAATTATTACATATGGTA >CB_05_ORF5_AKA65834_1_2005_Italy_Dog_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAGTATTAGCGTGTGCAATTGCATGCGCATGTGGTGAA------CGTTATTGCGCTATGAAATCTGACTCAGATACTTCG---TGTCGC------------AATGGTACCACT---ACTGATTGCGAATCATGCTTCAACGGAGGTGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTGTAATATTGATC------GTTTTTATAACGGTTTTACAATATGGTAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTTATTATGTGGCTACTATGGCCCATTGTTCTGGCTCTTACGATTTTTAATGCATACTCGGAATACGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAATTGTTACATTTATACTTTGGATTATGTATTTTGTTAGATCCATTCAGTTATACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAACGCAATTCTTTGCGTTAGTGCATTAGGAAGGAGCTATGTGCTTCCTCTTGAAGGTGTGCCAACTGGTGTCACTTTAACATTGCTCTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTGCCAAAGTACGTAATGGTTGCATTACCTAGCAGGACCATTGTCTACACACTTGTTGGTAAGAAATTGAAAGCAAGTAGTGCAACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGATGCACGAACTGACAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >WH_1_M_ADY39744_1_NA_China_Swine_Alphacoronavirus_1 ---------------------------------------------------------------------------------ATGAAGATTTTGTTAATATTAGCGTGTGTGATTGCATGCGCATGTGGAGAA------CGCTATTGTGCTATGAAATCCGATACAGATTTGTCA---TGTCGC------------AATAGTACAGCG---TCTGATTGTGAGTCATGCTTCAACGGAGGCGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACTGTGCTACAATATGGAAGACCTCAATTCAGCTGGTTCGTGTATGGCATTAAAATGCTTATAATGTGGCTATTATGGCCCGTTGTTTTGGCTCTTACGATTTTTAATGCATACTCGGAATACCAAGTGTCCAGATATGTAATGTTCGGCTTTAGTATTGCAGGTGCAATTGTTACATTTGTACTCTGGATTATGTATTTTGTAAGATCCATTCAGTTGTACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAAAGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTATGTGCTTCCTCTCGAAGGTGTGCCAACTGGTGTCACTCTAACTTTGCTTTCAGGGAATTTGTACGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACTATTGTCTACACACTTGTTGGCAAGAAGTTGAAAGCAAGTAGTGCGACTGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAGGCAAGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >FCoVWSU791146_P8_M_AGZ84531_1_2011_USA_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGCTAATACTCGCGTGCATAATTGCATGCGTTTATGGTGAA------CGCTACTGTGCCATGCAA---GACAGTGGCTTGCAG---TGTATT------------AATGGCACAAAT---TCAAGATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTGTTCAGCTATATAGAAGAACCAAATCATGGTGGTCTTTTAATCCTGAGACTAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTGCTTCCCTTAGATGGTACTCCTACAGGTGTTACCCTTACTCTACTTTCAGGAAATCTATATGCTGAAGGTTTCAAAATGGCTGGTGGTTTAACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTACGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGACAATTTGAGTGAACATGAAAAATTATTACATATGGTG >Cat1_day7_NA_AMD11147_1_2013_Belgium_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGCTCATGTTCGCGTGCATAATTGCATGCGTTTGTGGTGAA------CGATACTGTGCCATGCAAGGTGCAAGTACAAGC------TGCATC------------AATGGCACCAAT---TCAGAATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCCGTAATATTGATC------GTTTTTATAACAGTTTTACAATATGGAAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCCGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTCATAACGTTTGCACTCTGGATGATGTATTTTGTGAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTCAACCCTGAAACTAATGCAATTCTTTGTGTTAACGCACTGGGTAGAAGTTATGTTTTACCCCTTGATGGCACTCCTACAGGTGTCACTCTTACTTTGCTTTCAGGAAATCTATATGCTGAAGGTTTTAAGATGGCTGGTGGTCTTACCATCGAGCAATTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAATTAAAAGCAACTACTGCTACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >Cat1_day28_withoutdeletion_NA_AMD11202_1_2013_Belgium_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGCTCATGTTCGCGTGCATAATTGCATGCGTTTGTGGTGAA------CGATACTGTGCCATGCAAGGTGCAAGTACAAGC------TGCATC------------AATGGCACCAAT---TCAGAATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCCGTAATATTGATC------GTTTTTATAACAGTTTTACAATATGGAAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCCGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTCATAACGTTTGCACTCTGGATGATGTATTTTGTGAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTCAACCCTGAAACTAATGCAATTCTTTGTGTTAACGCACTGGGTAGAAGTTATGTTTTACCCCTTGATGGCACTCCTACAGGTGTCACTCTTACTTTGCTTTCAGGAAATCTATATGCTGAAGGTTTTAAGATGGCTGGTGGTCTTACCATCGAGCAATTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAATTAAAAGCAACTACTGCTACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >UU21_NA_ADL71470_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGTTCATATTCGCTTGCATAATTGCATGCGCCTTTGGTGAA------CGTTACTGTGCTATGCAAGAAGCGAAATCCACAACT---TGCATC------------AATGGCACCGAGCCGGGTTCATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTAGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------ATCTTTATAACAGTGCTACAATATGGTAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTGTTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTATCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTATCGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGTTGGTCTTTTAATCCTGAAACCAATGCTATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTACTTCCTCTTGATGGCACTCCTACGGGTGTGACTCTCACTCTACTTTCAGGGAATCTATATGCTGAAGGCTTTAAAATGGCTGGTGGTCTTACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACGCCTAGTAGAACCATCGTCTACACACTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1 ATGCCTATGATGCCTATAAGAATTTTATGCGAATTAAAGCATATAACCCTGATGAAGCACTCCTTGTTTGAACTAAACAAAATGAAGATTTTGTTAATATTAGCGTGTGCAATTGCATGCGCATGTGGTGAA------CGTTATTGCGCCATGAAATCTGACTCAGAAACTTCG---TGTCGT------------AATAGCACTGCT---ACTGATTGTGAATCATGCTTCAACGGAGGTGATCTTATTTGGCATCTTGCAAACTGGAACTTCAGCTGGTCTATAATATTGATC------GTTTTTATAACGGTTTTACAATATGGTAGACCTCAATTTAGCTGGTTCGTGTATGGCATTAAAATGCTTATTATGTGGCTATTATGGCCCATTGTTTTGGCTCTTACGATTTTTAATGCATACTCTGAATATGAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAATTGTTACATTTATACTTTGGATTATGTATTTTATTAGATCCATTCAGTTATACAGAAGGACTAAGTCTTGGTGGTCTTTCAACCCTGAAACTAACGCAATTCTTTGCGTTAGTGCATTAGGAAGAAGCTACGTGCTTCCTCTTGAAGGTGTGCCAACTGGTGTCACTCTAACATTGCTCTCAGGGAATTTGTATGCTGAAGGGTTCAAAATTGCAGGTGGTATGAACATCGACAATTTACCAAAATACGTAATGGTTGCATTACCTAGCAGGACCATTGTCTACACACTTGTTGGCAAGAAATTGAAAGCAAGTAGTGCGACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGATGCACGAACTGATAATTTGAGTGAGCAAGAAAAATTATTACATATGGTA >FIPV_79_1146_NA_AAY32598_1_NA_NA_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGCTAATACTCGCGTGCATAATTGCATGCGTTTATGGTGAA------CGCTACTGTGCCATGCAA---GACAGTGGCTTGCAG---TGTATT------------AATGGCACAAAT---TCAAGATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTGTTCAGCTATATAGAAGAACCAAATCATGGTGGTCTTTTAATCCTGAGACTAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTGCTTCCCTTAGATGGTACTCCTACAGGTGTTACCCTTACTCTACTTTCAGGAAATCTATATGCTGAAGGTTTCAAAATGGCTGGTGGTTTAACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTACGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGACAATTTGAGTGAACATGAAAAATTATTACATATGGTG >Cat2_day21_withoutdeletion_NA_AMD11169_1_2013_Belgium_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGCTCATGTTCGCGTGCATAATTGCATGCGTTTGTGGTGAA------CGATACTGTGCCATGCAAGGTGCAAGTACAAGC------TGCATC------------AATGGCACCAAC---TCAGAATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCCGTAATATTGATC------GTTTTTATAACAGTTTTACAATATGGAAGACCGCAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCCGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTCATAACGTTTGCACTCTGGATGATGTATTTTGTGAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTCAACCCTGAAACTAATGCAATTCTTTGTGTTAACGCACTGGGTAGAAGTTATGTTTTACCCCTTGATGGCACTCCTACAGGTGTCACTCTTACTTTGCTTTCAGGAAATCTATATGCTGAAGGTTTTAAGATGGCTGGTGGTCTTACCATCGAGCAATTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTACACATTAGTTGGGAAACAATTAAAAGCAACTACTGCTACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAGATTATTACATATGGTG >UG_FH8_NA_ASU62493_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGTTCATACTCGCGTGCATAATTGCATGTGCTTTTGGAGAA------CGTTACTGTGCTATGCAAGATCAATCATCCATTACT---TGCATC------------AATGGCACTGAT---TCTTCATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCCATCGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTATAATGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAATTGTAACGTTTGCACTTTGGGTGATGTATTTTGTGAGATCCATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAGACCAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTACTACCTCTTGATGGCACTCCTACGGGTGTGACTCTCACTCTACTTTCAGGAAATCTATATGCTGAAGGCTTTAAAATGGCTGGTGGTCTTACCATCGACCATTTACCTAAATACGTCATGATTGCTACGCCTAGTAGAACCATCGTTTACACATTAGTTGGAAAACAATTAAAAGCAACTACTGCCACGGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTA >DF_2_R3i_M_AFH55116_1_NA_NA_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACATTTTGCTAATACTCGCGTGCATAATTGCATGCGTTTATGGTGAA------CGCTACTGTGCCATGCAA---GACAGTGGCTTGCAG---TGTATT------------AATGGCACAAAT---TCAAGATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATACTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTATTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTACCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTGTTCAGCTATATAGAAGAACCAAATCATGGTGGTCTTTTAATCCTGAGACTAATGCAATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTGCTTCCCTTAGATGGTACTCCTACAGGTGTTACCCTTACTCTACTTTCAGGAAATCTATATGCTGAAGGTTTCAAAATGGCTGGTGGTTTAACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTACGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGACAATTTGAGTGAACATGAAAAATTATTACATATGGTG >UU22_NA_ADC35466_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGCACGTTTTGTTCATATTCGCTTGCATAATTGCATGCGCCTTTGGTGAA------CGTTACTGTGCTATGCAAGATGCGAGATCCACAACT---TGCATC------------AATGGCACCGAGTCGGATTCATGTCAAACCTGCTTTGAACGTGGTGATCTTATTTGGCATCTTGCTAACTGGAACTTCAGCTGGTCTGTAATATTGATT------ATCTTTATAACAGTGCTACAATATGGTAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTGTTATGGCCTATTGTTCTAGCGCTTACGATTTTTAATGCATACTCTGAGTATCAAGTTTCCAGATATGTAATGTTCGGCTTTAGTATCGCAGGTGCAGTTGTAACGTTTGCACTTTGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAATCCTGAAACCAATGCTATTCTTTGTGTTAATGCATTGGGTAGAAGTTATGTACTTCCTCTTGATGGCACTCCTACGGGTGTGACTCTCACTCTACTTTCAGGGAATCTATATGCTGAAGGCTTTAAAATGGCTGGTGGTCTTACCATCGAGCATTTGCCTAAATACGTCATGATTGCTACGCCTAGTAGAACCATCGTCTACACACTAGTTGGAAAACAATTAAAAGCAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCTGGTGATTACTCAACAGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG >FCoV_C1Je_NA_ABI14450_1_NA_NA_Unknown_Alphacoronavirus_1 ------------------------------------------------------------------------------ATGAAGTACGTTTTGTTAATATTAGCGTGCATAATTGCATGCGTTTGTGGTGAA------CGATACTGTGCTATGCAATAT---CACTCCACAAGC---TGCATC------------AACGGCACTGAAACAAACTCATGTCAAACCTGCTTCGAACGTGGTGATCTTATTTGGCATCTCGCTAACTGGAACTTCAGCTGGTCTGTGATACTGATT------GTTTTTATAACAGTGTTACAATATGGCAGACCACAATTTAGCTGGCTCGTTTATGGCATTAAAATGCTGATCATGTGGCTACTATGGCCTATTGTTCTAGCACTTACGATTTTTAATGCGTACTCTGAGTACAAAGTTTCCAGATATGTAATGTTCGGCTTTAGTGTTGCAGGTGCAGTTGTAACGTTTGCATTATGGATGATGTATTTTGTGAGATCTATTCAGCTATATAGAAGGACCAAATCATGGTGGTCTTTTAACCCTGAGACTAATGCAATTCTTTGTGTTAATGTGTTGGGTAGAAGTTACGTTCTACCACTTGATGGCACTCCTACGGGTGTCACTCTCACGTTACTTTCAGGAAATCTATATGCTGAAGGGTTTAAAATGTCTGGTGGTCTTACCATCGAGCATTTGCCTAAATATGTCATGATTGCTACACCTAGTAGAACCATCGTTTATACATTAGTTGGAAAACAATTAAAAGTAACTACTGCCACAGGATGGGCTTACTATGTAAAATCTAAAGCCGGTGATTACTCAACTGAAGCACGTACTGATAATTTGAGTGAACATGAAAAATTATTACATATGGTG
>171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCAMQ-DSGLQ-CINGTN-SRCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >80F_M_AJO27018_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1 --------------------------MKYILFLLACIIACVYGE--RYCAMQSATSTS-CINGTDHNSCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYVMFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >Cat2_day21_deletion_NA_AMD11158_1_2013_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYVLLMFACIIACVCGE--RYCAMQGASTS--CINGTN-SECQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHERLLHMV >TGEV_Mex_145_2008_M_ASV64362_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCAMKSDTDLS-CRNSTA-SDCESCFNGGDLIWHLANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYILVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >HE_1_NA_APQ31246_1_2015_China_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCAMKSDTDLS-CRNSTA-SDCESCFNGGDLIWHLANWNFSRSIILIVFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYILVGKKLKASSATGWAYYVKSKAGDYSAEARTDNLSEQEKLLHMV >TGEV_USA_Illinois146_2008_M_ASV64371_1_2008_04_09_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAIACACGE--RYCAMQ-DTGLS-CRNSTV-SDCESCFNGGDLIWHLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >WSU_79_1683_NA_AFH58016_1_NA_NA_Unknown_Alphacoronavirus_1 MLTMPIRISCELKHTTPMKHSLFELNKMKILLILACAVACVYGEQIRYCAMQ-ETGLS-CRNGTA-SDCESCFNGGDLIWHLANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYVMFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIL-------------RLIEPSFTH------------------------------- >TGEV_USA_Illinois139_2006_M_ASV64308_1_2006_11_17_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAIACACGE--RYCAMQ-DTGLS-CRNSTV-SDCESCFNGGDLIWHLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1 --------------------------MMKILLI-ACAIACAYGE--RYCAMSDESSSTSCRNSTSGDTCASCINSGDLIWHLANWNFSWSVILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYVMFGFSIAGAVITFALWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRSYVLPLEGTPTGVTLTLLSGNLYAEGFKMAGGMNIEHLPKYVMVALPSRTIVYTLVGKQLKASSATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >TGEV_USA_NorthCarolina140_2007_M_ASV64317_1_2007_02_08_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAIVCACGE--RYCAMQ-DTGLS-CRNSTV-SDCESCFNGGDLIWHLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >TGEV_USA_Minnesota152_2014_M_ASV64424_1_2014_01_31_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAMACACGE--RYCAMQ-DTGLS-CRNSTV-SDCESCFNGGDLIWHLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >TGEV_USA_Minnesota148_2013_M_ASV64388_1_2013_01_04_USA_Unknown_Alphacoronavirus_1 ---------------------------MKILLILACAIACACGE--RYCAMQ-DTGLS-CRNSTV-SDCESCFNGGDLIWHLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >79_1146_M_YP_004070198_1_NA_USA_Unknown_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCAMQ-DSGLQ-CINGTN-SRCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >HLJ_073_NA_ASB15761_1_2016_07_01_China_Dog_Alphacoronavirus_1 -----------------MKHSSFELNKMKILLILACAVACVYGEQIRYCAMQ-ETGLS-CRNGTA-SDCESCFNGGDLIWHLANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTTFNAYSEYEVSRYVMFGFSIAGAIITFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKQLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV >UNKNOWN_HQ012372_NA_ADL71502_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKHVLFIFACIIACAFGE--RYCAMQDAQSTT-CINGTESNSCQTCFERGDLIWHLANWNFSWSVILIIFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1 ---------------------------MKILLLLACAIACVCGE--RYCAMQ-DTGFS-CRNSST-TDCESCFNGGDLIWHLANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRNYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKQLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV >AYU_NA_AEM55570_1_2009_China_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCAMKSDTDLS-CRNSTA-SDCESCFNGGDLIWHLANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQDKLLHMV >CB_05_ORF5_AKA65834_1_2005_Italy_Dog_Alphacoronavirus_1 ---------------------------MKILLVLACAIACACGE--RYCAMKSDSDTS-CRNGTT-TDCESCFNGGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYVMFGFSVAGAIVTFILWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV >WH_1_M_ADY39744_1_NA_China_Swine_Alphacoronavirus_1 ---------------------------MKILLILACVIACACGE--RYCAMKSDTDLS-CRNSTA-SDCESCFNGGDLIWHLANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV >FCoVWSU791146_P8_M_AGZ84531_1_2011_USA_Cat_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCAMQ-DSGLQ-CINGTN-SRCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >Cat1_day7_NA_AMD11147_1_2013_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYVLLMFACIIACVCGE--RYCAMQGASTS--CINGTN-SECQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >Cat1_day28_withoutdeletion_NA_AMD11202_1_2013_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYVLLMFACIIACVCGE--RYCAMQGASTS--CINGTN-SECQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >UU21_NA_ADL71470_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKYVLFIFACIIACAFGE--RYCAMQEAKSTT-CINGTEPGSCQTCFERGDLIWHLANWNFSWSVILIIFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSCWSFNPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1 MPMMPIRILCELKHITLMKHSLFELNKMKILLILACAIACACGE--RYCAMKSDSETS-CRNSTA-TDCESCFNGGDLIWHLANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYEVSRYVMFGFSVAGAIVTFILWIMYFIRSIQLYRRTKSWWSFNPETNAILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV >FIPV_79_1146_NA_AAY32598_1_NA_NA_Cat_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCAMQ-DSGLQ-CINGTN-SRCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >Cat2_day21_withoutdeletion_NA_AMD11169_1_2013_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYVLLMFACIIACVCGE--RYCAMQGASTS--CINGTN-SECQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVITFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEQLPKYVMIATPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHERLLHMV >UG_FH8_NA_ASU62493_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1 --------------------------MKYILFILACIIACAFGE--RYCAMQDQSSIT-CINGTD-SSCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYNVSRYVMFGFSVAGAIVTFALWVMYFVRSIQLYRRTKSWWSFNPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIDHLPKYVMIATPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >DF_2_R3i_M_AFH55116_1_NA_NA_Cat_Alphacoronavirus_1 --------------------------MKYILLILACIIACVYGE--RYCAMQ-DSGLQ-CINGTN-SRCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >UU22_NA_ADC35466_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1 --------------------------MKHVLFIFACIIACAFGE--RYCAMQDARSTT-CINGTESDSCQTCFERGDLIWHLANWNFSWSVILIIFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYVMFGFSIAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSRTIVYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV >FCoV_C1Je_NA_ABI14450_1_NA_NA_Unknown_Alphacoronavirus_1 --------------------------MKYVLLILACIIACVCGE--RYCAMQY-HSTS-CINGTETNSCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYKVSRYVMFGFSVAGAVVTFALWMMYFVRSIQLYRRTKSWWSFNPETNAILCVNVLGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMSGGLTIEHLPKYVMIATPSRTIVYTLVGKQLKVTTATGWAYYVKSKAGDYSTEARTDNLSEHEKLLHMV
Reading sequence file /data//pss_subsets/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/codeml/fasta/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1
Found 30 sequences of length 897
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 13.1%
Found 219 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0% 70.6% 99.3%100.0%
Using a window size of 80 with k as 20
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 152 polymorphic sites
**p-Value(s)**
----------
NSS: 0.00e+00 (1000 permutations)
Max Chi^2: 0.00e+00 (1000 permutations)
PHI (Permutation): 0.00e+00 (1000 permutations)
PHI (Normal): 9.71e-14
#NEXUS
[ID: 8048481519]
begin taxa;
dimensions ntax=30;
taxlabels
TGEV_USA_Minnesota148_2013_M_ASV64388_1_2013_01_04_USA_Unknown_Alphacoronavirus_1
TGEV_USA_Minnesota152_2014_M_ASV64424_1_2014_01_31_USA_Unknown_Alphacoronavirus_1
79_1146_M_YP_004070198_1_NA_USA_Unknown_Alphacoronavirus_1
AYU_NA_AEM55570_1_2009_China_Swine_Alphacoronavirus_1
A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1
CB_05_ORF5_AKA65834_1_2005_Italy_Dog_Alphacoronavirus_1
Cat1_day28_withoutdeletion_NA_AMD11202_1_2013_Belgium_Cat_Alphacoronavirus_1
Cat1_day7_NA_AMD11147_1_2013_Belgium_Cat_Alphacoronavirus_1
UG_FH8_NA_ASU62493_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1
Cat2_day21_withoutdeletion_NA_AMD11169_1_2013_Belgium_Cat_Alphacoronavirus_1
TGEV_Mex_145_2008_M_ASV64362_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1
FCoV_C1Je_NA_ABI14450_1_NA_NA_Unknown_Alphacoronavirus_1
TGEV_USA_Illinois139_2006_M_ASV64308_1_2006_11_17_USA_Unknown_Alphacoronavirus_1
171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1
Cat2_day21_deletion_NA_AMD11158_1_2013_Belgium_Cat_Alphacoronavirus_1
80F_M_AJO27018_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1
TGEV_USA_Illinois146_2008_M_ASV64371_1_2008_04_09_USA_Unknown_Alphacoronavirus_1
HE_1_NA_APQ31246_1_2015_China_Swine_Alphacoronavirus_1
WSU_79_1683_NA_AFH58016_1_NA_NA_Unknown_Alphacoronavirus_1
TGEV_USA_NorthCarolina140_2007_M_ASV64317_1_2007_02_08_USA_Unknown_Alphacoronavirus_1
HLJ_073_NA_ASB15761_1_2016_07_01_China_Dog_Alphacoronavirus_1
UNKNOWN_HQ012372_NA_ADL71502_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1
FCoVWSU791146_P8_M_AGZ84531_1_2011_USA_Cat_Alphacoronavirus_1
WH_1_M_ADY39744_1_NA_China_Swine_Alphacoronavirus_1
FIPV_79_1146_NA_AAY32598_1_NA_NA_Cat_Alphacoronavirus_1
UU21_NA_ADL71470_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1
1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1
23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1
UU22_NA_ADC35466_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1
DF_2_R3i_M_AFH55116_1_NA_NA_Cat_Alphacoronavirus_1
;
end;
begin trees;
translate
1 TGEV_USA_Minnesota148_2013_M_ASV64388_1_2013_01_04_USA_Unknown_Alphacoronavirus_1,
2 TGEV_USA_Minnesota152_2014_M_ASV64424_1_2014_01_31_USA_Unknown_Alphacoronavirus_1,
3 79_1146_M_YP_004070198_1_NA_USA_Unknown_Alphacoronavirus_1,
4 AYU_NA_AEM55570_1_2009_China_Swine_Alphacoronavirus_1,
5 A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1,
6 CB_05_ORF5_AKA65834_1_2005_Italy_Dog_Alphacoronavirus_1,
7 Cat1_day28_withoutdeletion_NA_AMD11202_1_2013_Belgium_Cat_Alphacoronavirus_1,
8 Cat1_day7_NA_AMD11147_1_2013_Belgium_Cat_Alphacoronavirus_1,
9 UG_FH8_NA_ASU62493_1_2015_01_01_Belgium_Cat_Alphacoronavirus_1,
10 Cat2_day21_withoutdeletion_NA_AMD11169_1_2013_Belgium_Cat_Alphacoronavirus_1,
11 TGEV_Mex_145_2008_M_ASV64362_1_2008_04_17_Mexico_Unknown_Alphacoronavirus_1,
12 FCoV_C1Je_NA_ABI14450_1_NA_NA_Unknown_Alphacoronavirus_1,
13 TGEV_USA_Illinois139_2006_M_ASV64308_1_2006_11_17_USA_Unknown_Alphacoronavirus_1,
14 171_M_AFX81095_1_1971_Germany_Dog_Alphacoronavirus_1,
15 Cat2_day21_deletion_NA_AMD11158_1_2013_Belgium_Cat_Alphacoronavirus_1,
16 80F_M_AJO27018_1_2013_01_01_United_Kingdom_Cat_Alphacoronavirus_1,
17 TGEV_USA_Illinois146_2008_M_ASV64371_1_2008_04_09_USA_Unknown_Alphacoronavirus_1,
18 HE_1_NA_APQ31246_1_2015_China_Swine_Alphacoronavirus_1,
19 WSU_79_1683_NA_AFH58016_1_NA_NA_Unknown_Alphacoronavirus_1,
20 TGEV_USA_NorthCarolina140_2007_M_ASV64317_1_2007_02_08_USA_Unknown_Alphacoronavirus_1,
21 HLJ_073_NA_ASB15761_1_2016_07_01_China_Dog_Alphacoronavirus_1,
22 UNKNOWN_HQ012372_NA_ADL71502_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1,
23 FCoVWSU791146_P8_M_AGZ84531_1_2011_USA_Cat_Alphacoronavirus_1,
24 WH_1_M_ADY39744_1_NA_China_Swine_Alphacoronavirus_1,
25 FIPV_79_1146_NA_AAY32598_1_NA_NA_Cat_Alphacoronavirus_1,
26 UU21_NA_ADL71470_1_2007_09_11_Netherlands_Cat_Alphacoronavirus_1,
27 1_71_NA_AFG19730_1_NA_NA_Dog_Alphacoronavirus_1,
28 23_03_ORF5_AKZ66477_1_2003_Italy_Unknown_Alphacoronavirus_1,
29 UU22_NA_ADC35466_1_2007_09_13_Netherlands_Cat_Alphacoronavirus_1,
30 DF_2_R3i_M_AFH55116_1_NA_NA_Cat_Alphacoronavirus_1
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:2.753276e-03,17:1.215270e-03,((2:7.902195e-03,(((((((3:1.139406e-03,14:1.112181e-03,23:1.174351e-03,25:1.080141e-03,30:2.639439e-03)1.000:5.605902e-02,(7:1.135107e-03,8:1.134872e-03,(10:1.113739e-03,15:1.148707e-03)0.989:4.135983e-03)1.000:6.085636e-02,((9:3.854397e-02,(22:3.684547e-03,26:8.677058e-03,29:2.203651e-03)1.000:4.297497e-02)0.999:2.350185e-02,(12:3.999513e-02,16:3.679378e-02)1.000:3.503633e-02)0.701:1.811573e-02)1.000:1.799894e-01,19:1.028450e-01)1.000:1.045315e-01,28:1.272214e-01)1.000:7.102810e-02,(5:4.124353e-02,21:3.530930e-02)0.520:8.209765e-03)0.997:1.948216e-02,(6:2.526969e-02,27:1.862079e-02)1.000:3.217006e-02)1.000:4.321621e-02,(4:2.674297e-03,(11:1.129657e-03,18:4.316948e-03)0.984:2.799014e-03,24:1.098108e-03)1.000:1.427365e-02)1.000:3.318103e-02)0.933:4.968432e-03,13:1.150532e-03,20:2.741661e-03)0.965:2.767701e-03);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:2.753276e-03,17:1.215270e-03,((2:7.902195e-03,(((((((3:1.139406e-03,14:1.112181e-03,23:1.174351e-03,25:1.080141e-03,30:2.639439e-03):5.605902e-02,(7:1.135107e-03,8:1.134872e-03,(10:1.113739e-03,15:1.148707e-03):4.135983e-03):6.085636e-02,((9:3.854397e-02,(22:3.684547e-03,26:8.677058e-03,29:2.203651e-03):4.297497e-02):2.350185e-02,(12:3.999513e-02,16:3.679378e-02):3.503633e-02):1.811573e-02):1.799894e-01,19:1.028450e-01):1.045315e-01,28:1.272214e-01):7.102810e-02,(5:4.124353e-02,21:3.530930e-02):8.209765e-03):1.948216e-02,(6:2.526969e-02,27:1.862079e-02):3.217006e-02):4.321621e-02,(4:2.674297e-03,(11:1.129657e-03,18:4.316948e-03):2.799014e-03,24:1.098108e-03):1.427365e-02):3.318103e-02):4.968432e-03,13:1.150532e-03,20:2.741661e-03):2.767701e-03);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -3912.93 -3943.66
2 -3912.49 -3940.39
--------------------------------------
TOTAL -3912.68 -3943.01
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.345104 0.011613 1.145441 1.564780 1.338044 932.30 1121.70 1.000
r(A<->C){all} 0.099136 0.000342 0.064149 0.135875 0.098077 694.89 847.81 1.000
r(A<->G){all} 0.266771 0.000812 0.214946 0.324433 0.266261 542.94 625.13 1.000
r(A<->T){all} 0.098559 0.000197 0.072518 0.126834 0.097827 784.19 802.34 1.000
r(C<->G){all} 0.065230 0.000298 0.034851 0.101220 0.063768 692.86 755.69 1.000
r(C<->T){all} 0.412590 0.001024 0.350835 0.477594 0.412553 683.28 702.99 1.000
r(G<->T){all} 0.057714 0.000146 0.034008 0.081254 0.057307 885.36 903.57 1.000
pi(A){all} 0.281318 0.000197 0.254128 0.307721 0.281212 873.84 888.85 1.000
pi(C){all} 0.181027 0.000135 0.159743 0.205800 0.180691 759.56 809.47 1.000
pi(G){all} 0.213200 0.000169 0.186706 0.236844 0.213186 835.31 988.44 1.000
pi(T){all} 0.324455 0.000203 0.297187 0.351850 0.323977 959.16 978.77 1.000
alpha{1,2} 0.228248 0.001116 0.166583 0.292692 0.224771 1081.73 1196.46 1.000
alpha{3} 2.187992 0.521467 0.987191 3.555824 2.071921 1262.85 1381.93 1.000
pinvar{all} 0.301408 0.002730 0.196323 0.397292 0.304387 991.01 1051.83 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/A76_M_AEQ61972_1_1976_USA_Dog_Alphacoronavirus_1.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 30 ls = 214
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 8 8 8 5 5 5 | Ser TCT 4 5 1 4 4 2 | Tyr TAT 8 7 7 6 6 8 | Cys TGT 4 3 4 5 5 5
TTC 3 4 3 7 7 7 | TCC 1 1 4 2 2 4 | TAC 5 6 5 5 5 3 | TGC 3 4 4 3 3 3
Leu TTA 5 6 4 4 4 3 | TCA 3 3 3 2 2 2 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 5 4 4 8 8 7 | TCG 0 0 0 1 1 1 | TAG 0 0 0 0 0 0 | Trp TGG 9 9 9 9 8 9
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 8 5 8 7 7 7 | Pro CCT 4 4 4 3 3 3 | His CAT 2 1 1 1 1 1 | Arg CGT 1 2 1 0 0 0
CTC 1 4 3 2 2 2 | CCC 1 1 1 1 1 1 | CAC 0 1 0 0 0 0 | CGC 1 0 0 2 2 2
CTA 6 5 4 3 3 4 | CCA 1 0 0 2 2 2 | Gln CAA 6 4 7 3 3 4 | CGA 0 0 1 0 0 0
CTG 1 1 2 0 0 1 | CCG 0 1 1 0 0 0 | CAG 1 2 1 1 1 1 | CGG 0 0 0 0 1 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 10 10 8 11 11 14 | Thr ACT 5 8 6 7 7 7 | Asn AAT 7 4 4 4 4 5 | Ser AGT 3 1 3 5 5 4
ATC 2 3 4 2 2 2 | ACC 4 2 4 0 0 0 | AAC 2 5 5 5 5 5 | AGC 2 3 3 3 3 4
ATA 4 3 4 5 5 4 | ACA 4 3 4 3 3 3 | Lys AAA 5 5 4 6 6 4 | Arg AGA 7 5 5 5 5 4
Met ATG 8 8 9 8 8 8 | ACG 2 4 2 1 1 1 | AAG 1 1 2 3 3 3 | AGG 0 1 1 1 1 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 10 8 10 6 6 5 | Ala GCT 4 4 5 3 3 4 | Asp GAT 2 2 2 3 3 2 | Gly GGT 9 6 8 5 5 6
GTC 1 3 3 1 1 1 | GCC 2 2 1 0 0 0 | GAC 0 1 0 1 1 1 | GGC 5 5 4 3 3 3
GTA 3 3 2 4 4 4 | GCA 8 6 8 11 11 10 | Glu GAA 3 4 5 5 5 4 | GGA 2 3 3 5 5 4
GTG 3 2 1 6 6 5 | GCG 2 4 2 3 3 3 | GAG 3 3 2 1 1 2 | GGG 0 1 0 2 2 3
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 9 5 7 5 5 5 | Ser TCT 4 2 4 2 2 2 | Tyr TAT 8 7 10 7 7 8 | Cys TGT 4 5 6 5 5 5
TTC 4 7 4 7 7 7 | TCC 1 4 2 4 4 4 | TAC 4 4 2 4 4 3 | TGC 3 3 1 3 3 3
Leu TTA 3 3 3 3 4 3 | TCA 3 2 3 2 2 2 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 6 7 5 7 6 7 | TCG 2 1 1 1 1 1 | TAG 0 0 0 0 0 0 | Trp TGG 9 9 9 9 9 9
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 8 7 12 7 7 7 | Pro CCT 4 3 3 3 2 3 | His CAT 3 1 2 1 1 1 | Arg CGT 0 0 0 0 0 0
CTC 2 2 0 2 2 2 | CCC 2 1 1 1 1 1 | CAC 0 0 0 0 0 0 | CGC 2 2 2 2 2 2
CTA 7 4 3 4 4 4 | CCA 1 2 2 2 3 2 | Gln CAA 3 4 3 4 4 4 | CGA 0 0 0 0 0 0
CTG 0 1 0 1 1 1 | CCG 0 0 0 0 0 0 | CAG 1 1 1 1 1 1 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 10 14 15 14 13 14 | Thr ACT 3 7 6 7 7 7 | Asn AAT 5 5 4 5 5 5 | Ser AGT 1 4 9 4 4 4
ATC 1 2 2 2 2 2 | ACC 2 0 1 0 0 0 | AAC 4 5 5 5 5 5 | AGC 3 4 3 4 4 4
ATA 5 4 2 4 4 4 | ACA 4 3 4 3 3 3 | Lys AAA 4 4 5 4 4 4 | Arg AGA 5 4 5 4 4 4
Met ATG 9 8 9 8 9 8 | ACG 4 1 1 1 1 1 | AAG 1 3 1 3 3 3 | AGG 2 2 1 2 2 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 11 5 4 5 5 5 | Ala GCT 4 4 6 4 3 4 | Asp GAT 3 2 2 2 2 2 | Gly GGT 10 6 5 6 6 6
GTC 1 1 2 1 1 1 | GCC 0 0 0 0 1 0 | GAC 0 1 0 1 1 1 | GGC 3 3 2 3 3 3
GTA 2 4 4 5 4 4 | GCA 9 10 11 9 10 10 | Glu GAA 6 4 6 4 4 4 | GGA 2 4 7 4 4 4
GTG 2 5 3 5 5 5 | GCG 2 3 2 3 3 3 | GAG 2 2 1 2 2 2 | GGG 1 3 0 3 3 3
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 8 6 10 8 5 6 | Ser TCT 4 4 4 3 4 3 | Tyr TAT 8 8 8 5 6 6 | Cys TGT 4 4 3 4 5 3
TTC 3 6 3 5 7 6 | TCC 1 2 2 3 2 2 | TAC 5 4 3 6 5 5 | TGC 3 3 4 4 3 5
Leu TTA 5 5 2 6 4 5 | TCA 3 2 3 2 2 3 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 5 7 4 6 8 6 | TCG 0 1 0 0 1 1 | TAG 0 0 0 0 0 0 | Trp TGG 9 9 9 9 9 9
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 8 7 9 8 7 8 | Pro CCT 4 3 5 3 3 3 | His CAT 2 1 2 1 1 1 | Arg CGT 1 0 2 1 0 1
CTC 1 1 2 1 2 1 | CCC 1 1 0 1 1 1 | CAC 0 0 1 0 0 0 | CGC 1 1 0 0 2 1
CTA 6 4 5 3 3 2 | CCA 1 2 1 2 2 2 | Gln CAA 6 4 7 4 3 2 | CGA 0 0 0 0 0 0
CTG 1 0 2 0 0 1 | CCG 0 0 0 0 0 0 | CAG 1 1 1 1 1 1 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 10 12 9 13 11 12 | Thr ACT 5 6 5 6 7 7 | Asn AAT 7 5 7 5 4 4 | Ser AGT 3 4 2 5 5 4
ATC 2 2 5 2 2 2 | ACC 4 0 5 1 0 1 | AAC 2 5 2 6 5 6 | AGC 2 3 2 3 3 3
ATA 4 4 4 3 5 3 | ACA 4 4 3 3 3 3 | Lys AAA 5 4 5 4 6 5 | Arg AGA 7 5 5 5 5 4
Met ATG 8 8 8 8 8 8 | ACG 2 2 3 2 1 2 | AAG 1 2 1 2 3 3 | AGG 0 2 1 2 1 2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 10 8 6 8 6 9 | Ala GCT 4 4 7 5 3 3 | Asp GAT 2 2 2 2 3 3 | Gly GGT 9 7 8 9 5 9
GTC 1 1 1 1 1 1 | GCC 2 0 2 0 0 0 | GAC 0 1 0 1 1 1 | GGC 5 4 5 2 3 2
GTA 3 3 4 4 4 4 | GCA 8 12 7 10 11 13 | Glu GAA 3 4 4 5 5 7 | GGA 2 3 1 4 5 3
GTG 3 4 3 3 6 3 | GCG 2 1 1 1 3 1 | GAG 3 3 3 2 1 0 | GGG 0 3 1 1 2 2
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 5 8 8 8 10 6 | Ser TCT 4 4 1 1 4 4 | Tyr TAT 6 8 7 7 8 7 | Cys TGT 5 4 4 4 4 4
TTC 7 3 3 3 3 6 | TCC 2 1 4 4 2 2 | TAC 5 5 5 5 4 4 | TGC 3 3 4 4 4 4
Leu TTA 4 5 4 4 2 6 | TCA 2 3 3 3 3 3 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 8 5 4 4 4 6 | TCG 1 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 9 9 9 9 8 9
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 7 8 8 8 8 8 | Pro CCT 3 4 4 4 5 3 | His CAT 1 2 1 1 2 1 | Arg CGT 0 1 1 1 2 2
CTC 2 1 3 3 2 1 | CCC 1 1 1 1 0 1 | CAC 0 0 0 0 0 0 | CGC 2 1 0 0 0 0
CTA 3 6 4 4 6 2 | CCA 2 1 0 0 1 2 | Gln CAA 3 6 7 7 6 2 | CGA 0 0 1 1 0 0
CTG 0 1 2 2 2 0 | CCG 0 0 1 1 0 0 | CAG 1 1 1 1 1 1 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 11 10 8 8 9 13 | Thr ACT 7 5 6 6 5 7 | Asn AAT 4 7 5 5 6 4 | Ser AGT 5 3 3 3 2 4
ATC 2 2 4 4 5 2 | ACC 0 4 4 4 5 0 | AAC 5 2 4 4 2 6 | AGC 3 2 3 3 2 4
ATA 5 4 4 4 4 5 | ACA 3 4 4 4 3 3 | Lys AAA 6 5 4 4 6 6 | Arg AGA 5 7 5 5 5 5
Met ATG 8 8 9 9 8 8 | ACG 1 2 2 2 3 2 | AAG 3 1 2 2 1 2 | AGG 1 0 1 1 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 6 10 10 10 6 8 | Ala GCT 3 4 5 5 7 3 | Asp GAT 3 2 2 2 2 2 | Gly GGT 5 9 8 8 9 8
GTC 1 1 3 3 1 1 | GCC 0 2 1 1 2 1 | GAC 1 0 0 0 0 1 | GGC 3 5 4 4 5 2
GTA 4 3 2 2 4 2 | GCA 11 8 8 8 7 12 | Glu GAA 5 3 5 5 4 8 | GGA 5 2 3 3 1 3
GTG 6 3 1 1 3 3 | GCG 3 2 2 2 1 2 | GAG 1 3 2 2 3 0 | GGG 2 0 0 0 1 2
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 8 8 10 8 10 8 | Ser TCT 4 1 4 4 4 5 | Tyr TAT 8 7 8 8 8 7 | Cys TGT 4 4 4 4 3 4
TTC 3 3 3 3 3 3 | TCC 1 4 3 1 2 2 | TAC 5 5 4 5 3 5 | TGC 3 4 3 3 4 4
Leu TTA 5 4 4 5 2 5 | TCA 3 3 4 3 3 3 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 5 4 3 4 4 3 | TCG 0 0 0 0 0 0 | TAG 0 0 0 0 0 0 | Trp TGG 9 9 9 9 9 9
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 8 8 8 8 9 6 | Pro CCT 4 4 4 4 5 4 | His CAT 2 1 2 2 2 2 | Arg CGT 1 1 2 1 2 1
CTC 1 3 2 1 2 3 | CCC 1 1 1 1 0 0 | CAC 0 0 0 0 1 1 | CGC 1 0 0 1 0 0
CTA 6 4 6 6 5 6 | CCA 1 0 1 1 1 2 | Gln CAA 6 7 5 6 6 5 | CGA 0 1 0 0 0 1
CTG 1 2 1 2 2 2 | CCG 0 1 0 0 0 0 | CAG 1 1 1 1 1 1 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 10 8 11 10 9 9 | Thr ACT 5 6 6 5 5 6 | Asn AAT 7 4 7 7 6 4 | Ser AGT 3 3 2 3 2 2
ATC 2 4 4 2 5 3 | ACC 4 4 4 4 5 3 | AAC 2 5 2 2 2 5 | AGC 2 3 2 2 2 2
ATA 4 4 4 4 4 4 | ACA 4 4 1 4 3 3 | Lys AAA 5 4 5 5 5 6 | Arg AGA 7 5 5 7 6 5
Met ATG 8 9 7 8 8 8 | ACG 2 2 4 2 3 4 | AAG 1 2 1 1 1 1 | AGG 0 1 1 0 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 10 10 6 10 6 10 | Ala GCT 4 5 6 4 7 4 | Asp GAT 2 2 3 2 3 2 | Gly GGT 9 8 6 9 8 7
GTC 1 3 1 1 1 2 | GCC 2 1 1 2 2 1 | GAC 0 0 1 0 0 0 | GGC 5 4 6 5 5 5
GTA 3 2 4 3 4 3 | GCA 8 8 8 8 7 6 | Glu GAA 3 5 3 3 4 4 | GGA 2 3 3 2 1 2
GTG 3 1 4 3 3 4 | GCG 2 2 2 2 1 2 | GAG 3 2 2 3 3 3 | GGG 0 0 0 0 1 1
--------------------------------------------------------------------------------------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C1
position 1: T:0.27103 C:0.15421 A:0.30841 G:0.26636
position 2: T:0.36449 C:0.21028 A:0.21028 G:0.21495
position 3: T:0.41589 C:0.15421 A:0.26636 G:0.16355
Average T:0.35047 C:0.17290 A:0.26168 G:0.21495
#2: C12
position 1: T:0.28037 C:0.14486 A:0.30841 G:0.26636
position 2: T:0.35981 C:0.22430 A:0.21495 G:0.20093
position 3: T:0.36449 C:0.21028 A:0.23364 G:0.19159
Average T:0.33489 C:0.19315 A:0.25234 G:0.21963
#3: C21
position 1: T:0.26168 C:0.15888 A:0.31776 G:0.26168
position 2: T:0.35981 C:0.21495 A:0.21028 G:0.21495
position 3: T:0.37383 C:0.20561 A:0.25234 G:0.16822
Average T:0.33178 C:0.19315 A:0.26012 G:0.21495
#4: C58
position 1: T:0.28505 C:0.11682 A:0.32243 G:0.27570
position 2: T:0.36916 C:0.20093 A:0.20561 G:0.22430
position 3: T:0.35047 C:0.17290 A:0.27103 G:0.20561
Average T:0.33489 C:0.16355 A:0.26636 G:0.23520
#5: C36
position 1: T:0.28037 C:0.12150 A:0.32243 G:0.27570
position 2: T:0.36916 C:0.20093 A:0.20561 G:0.22430
position 3: T:0.35047 C:0.17290 A:0.27103 G:0.20561
Average T:0.33333 C:0.16511 A:0.26636 G:0.23520
#6: C61
position 1: T:0.27570 C:0.13084 A:0.32710 G:0.26636
position 2: T:0.36916 C:0.20093 A:0.20093 G:0.22897
position 3: T:0.36449 C:0.17757 A:0.24299 G:0.21495
Average T:0.33645 C:0.16978 A:0.25701 G:0.23676
#7: C99
position 1: T:0.28037 C:0.15421 A:0.29439 G:0.27103
position 2: T:0.37383 C:0.21028 A:0.20561 G:0.21028
position 3: T:0.40654 C:0.14953 A:0.25234 G:0.19159
Average T:0.35358 C:0.17134 A:0.25078 G:0.22430
#8: C60
position 1: T:0.27570 C:0.13084 A:0.32710 G:0.26636
position 2: T:0.36916 C:0.20093 A:0.20093 G:0.22897
position 3: T:0.35981 C:0.18224 A:0.24299 G:0.21495
Average T:0.33489 C:0.17134 A:0.25701 G:0.23676
#9: C5
position 1: T:0.26636 C:0.13551 A:0.34112 G:0.25701
position 2: T:0.35047 C:0.21963 A:0.19626 G:0.23364
position 3: T:0.44393 C:0.12617 A:0.27103 G:0.15888
Average T:0.35358 C:0.16044 A:0.26947 G:0.21651
#10: C72
position 1: T:0.27570 C:0.13084 A:0.32710 G:0.26636
position 2: T:0.37383 C:0.19626 A:0.20093 G:0.22897
position 3: T:0.35981 C:0.18224 A:0.24299 G:0.21495
Average T:0.33645 C:0.16978 A:0.25701 G:0.23676
#11: C66
position 1: T:0.27570 C:0.13084 A:0.32710 G:0.26636
position 2: T:0.36916 C:0.20093 A:0.20093 G:0.22897
position 3: T:0.34579 C:0.18692 A:0.25234 G:0.21495
Average T:0.33022 C:0.17290 A:0.26012 G:0.23676
#12: C67
position 1: T:0.27570 C:0.13084 A:0.32710 G:0.26636
position 2: T:0.36916 C:0.20093 A:0.20093 G:0.22897
position 3: T:0.36449 C:0.17757 A:0.24299 G:0.21495
Average T:0.33645 C:0.16978 A:0.25701 G:0.23676
#13: C11
position 1: T:0.27103 C:0.15421 A:0.30841 G:0.26636
position 2: T:0.36449 C:0.21028 A:0.21028 G:0.21495
position 3: T:0.41589 C:0.15421 A:0.26636 G:0.16355
Average T:0.35047 C:0.17290 A:0.26168 G:0.21495
#14: C38
position 1: T:0.28505 C:0.11682 A:0.31776 G:0.28037
position 2: T:0.36449 C:0.20561 A:0.20561 G:0.22430
position 3: T:0.37850 C:0.15888 A:0.26168 G:0.20093
Average T:0.34268 C:0.16044 A:0.26168 G:0.23520
#15: C81
position 1: T:0.25701 C:0.17290 A:0.31308 G:0.25701
position 2: T:0.35981 C:0.22430 A:0.21495 G:0.20093
position 3: T:0.41589 C:0.17290 A:0.23832 G:0.17290
Average T:0.34424 C:0.19003 A:0.25545 G:0.21028
#16: C13
position 1: T:0.28505 C:0.11682 A:0.32710 G:0.27103
position 2: T:0.36916 C:0.19626 A:0.20561 G:0.22897
position 3: T:0.40187 C:0.16822 A:0.25701 G:0.17290
Average T:0.35202 C:0.16044 A:0.26324 G:0.22430
#17: C14
position 1: T:0.28505 C:0.11682 A:0.32243 G:0.27570
position 2: T:0.36916 C:0.20093 A:0.20561 G:0.22430
position 3: T:0.35047 C:0.17290 A:0.27103 G:0.20561
Average T:0.33489 C:0.16355 A:0.26636 G:0.23520
#18: C16
position 1: T:0.28037 C:0.11215 A:0.32243 G:0.28505
position 2: T:0.35981 C:0.21028 A:0.20561 G:0.22430
position 3: T:0.38318 C:0.17290 A:0.26168 G:0.18224
Average T:0.34112 C:0.16511 A:0.26324 G:0.23053
#19: C100
position 1: T:0.28505 C:0.11682 A:0.32243 G:0.27570
position 2: T:0.36916 C:0.20093 A:0.20561 G:0.22430
position 3: T:0.35047 C:0.17290 A:0.27103 G:0.20561
Average T:0.33489 C:0.16355 A:0.26636 G:0.23520
#20: C27
position 1: T:0.27103 C:0.15421 A:0.30841 G:0.26636
position 2: T:0.36449 C:0.21028 A:0.21028 G:0.21495
position 3: T:0.41589 C:0.15421 A:0.26636 G:0.16355
Average T:0.35047 C:0.17290 A:0.26168 G:0.21495
#21: C20
position 1: T:0.26168 C:0.15888 A:0.31776 G:0.26168
position 2: T:0.35981 C:0.21495 A:0.21028 G:0.21495
position 3: T:0.37850 C:0.20093 A:0.25234 G:0.16822
Average T:0.33333 C:0.19159 A:0.26012 G:0.21495
#22: C19
position 1: T:0.26168 C:0.15888 A:0.31776 G:0.26168
position 2: T:0.35981 C:0.21495 A:0.21028 G:0.21495
position 3: T:0.37850 C:0.20093 A:0.25234 G:0.16822
Average T:0.33333 C:0.19159 A:0.26012 G:0.21495
#23: C88
position 1: T:0.26168 C:0.16355 A:0.31308 G:0.26168
position 2: T:0.35981 C:0.22430 A:0.21028 G:0.20561
position 3: T:0.41589 C:0.17290 A:0.24299 G:0.16822
Average T:0.34579 C:0.18692 A:0.25545 G:0.21184
#24: C2
position 1: T:0.28505 C:0.10748 A:0.33645 G:0.27103
position 2: T:0.35981 C:0.21028 A:0.20561 G:0.22430
position 3: T:0.39252 C:0.16355 A:0.27570 G:0.16822
Average T:0.34579 C:0.16044 A:0.27259 G:0.22118
#25: C32
position 1: T:0.27103 C:0.15421 A:0.30841 G:0.26636
position 2: T:0.36449 C:0.21028 A:0.21028 G:0.21495
position 3: T:0.41589 C:0.15421 A:0.26636 G:0.16355
Average T:0.35047 C:0.17290 A:0.26168 G:0.21495
#26: C22
position 1: T:0.26168 C:0.15888 A:0.31776 G:0.26168
position 2: T:0.35981 C:0.21495 A:0.21028 G:0.21495
position 3: T:0.37383 C:0.20561 A:0.25234 G:0.16822
Average T:0.33178 C:0.19315 A:0.26012 G:0.21495
#27: C78
position 1: T:0.27570 C:0.15421 A:0.30841 G:0.26168
position 2: T:0.36449 C:0.22897 A:0.20561 G:0.20093
position 3: T:0.41589 C:0.17290 A:0.24766 G:0.16355
Average T:0.35202 C:0.18536 A:0.25389 G:0.20872
#28: C26
position 1: T:0.26636 C:0.15888 A:0.30841 G:0.26636
position 2: T:0.36449 C:0.21028 A:0.21028 G:0.21495
position 3: T:0.41589 C:0.15421 A:0.26636 G:0.16355
Average T:0.34891 C:0.17445 A:0.26168 G:0.21495
#29: C89
position 1: T:0.25701 C:0.16822 A:0.31308 G:0.26168
position 2: T:0.35981 C:0.22430 A:0.21028 G:0.20561
position 3: T:0.41589 C:0.17290 A:0.23832 G:0.17290
Average T:0.34424 C:0.18847 A:0.25389 G:0.21340
#30: C30
position 1: T:0.27103 C:0.15888 A:0.30841 G:0.26168
position 2: T:0.36916 C:0.21028 A:0.21495 G:0.20561
position 3: T:0.37850 C:0.18224 A:0.25701 G:0.18224
Average T:0.33956 C:0.18380 A:0.26012 G:0.21651
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 215 | Ser S TCT 98 | Tyr Y TAT 219 | Cys C TGT 127
TTC 140 | TCC 73 | TAC 133 | TGC 101
Leu L TTA 122 | TCA 80 | *** * TAA 0 | *** * TGA 0
TTG 164 | TCG 14 | TAG 0 | Trp W TGG 268
------------------------------------------------------------------------------
Leu L CTT 231 | Pro P CCT 108 | His H CAT 43 | Arg R CGT 24
CTC 56 | CCC 27 | CAC 4 | CGC 29
CTA 132 | CCA 41 | Gln Q CAA 141 | CGA 5
CTG 30 | CCG 5 | CAG 31 | CGG 1
------------------------------------------------------------------------------
Ile I ATT 327 | Thr T ACT 182 | Asn N AAT 155 | Ser S AGT 105
ATC 80 | ACC 65 | AAC 123 | AGC 86
ATA 121 | ACA 100 | Lys K AAA 145 | Arg R AGA 155
Met M ATG 246 | ACG 61 | AAG 57 | AGG 34
------------------------------------------------------------------------------
Val V GTT 229 | Ala A GCT 131 | Asp D GAT 68 | Gly G GGT 219
GTC 42 | GCC 26 | GAC 15 | GGC 114
GTA 101 | GCA 273 | Glu E GAA 134 | GGA 95
GTG 105 | GCG 65 | GAG 62 | GGG 37
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.27321 C:0.14143 A:0.31807 G:0.26729
position 2: T:0.36464 C:0.21012 A:0.20717 G:0.21807
position 3: T:0.38645 C:0.17352 A:0.25623 G:0.18380
Average T:0.34143 C:0.17503 A:0.26049 G:0.22305
Model 1: NearlyNeutral (2 categories)
TREE # 1: (12, 6, ((11, (((((((13, 1, 20, 25, 28), (22, 21, (26, 3)), ((27, (15, 23, 29)), (30, 2))), 7), 9), (16, 14)), (18, 24)), (17, (4, 5), 19))), 8, 10)); MP score: 423
check convergence..
lnL(ntime: 49 np: 52): -3122.166428 +0.000000
31..12 31..6 31..32 32..33 33..11 33..34 34..35 35..36 36..37 37..38 38..39 39..40 40..13 40..1 40..20 40..25 40..28 39..41 41..22 41..21 41..42 42..26 42..3 39..43 43..44 44..27 44..45 45..15 45..23 45..29 43..46 46..30 46..2 38..7 37..9 36..47 47..16 47..14 35..48 48..18 48..24 34..49 49..17 49..50 50..4 50..5 49..19 32..8 32..10
0.000004 0.000004 0.004979 0.010997 0.019442 0.076349 0.089449 0.041782 0.132007 0.251949 0.397766 0.130735 0.000004 0.000004 0.000004 0.000004 0.005070 0.177628 0.000004 0.000004 0.005032 0.000004 0.000004 0.062387 0.056437 0.086656 0.109887 0.010463 0.020789 0.005167 0.083593 0.102299 0.081752 0.228690 0.316917 0.018407 0.118009 0.087317 0.090239 0.063672 0.050385 0.035117 0.000004 0.000004 0.000004 0.004943 0.000004 0.000004 0.004969 2.522420 0.890247 0.049183
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 2.981341
(12: 0.000004, 6: 0.000004, ((11: 0.019442, (((((((13: 0.000004, 1: 0.000004, 20: 0.000004, 25: 0.000004, 28: 0.005070): 0.130735, (22: 0.000004, 21: 0.000004, (26: 0.000004, 3: 0.000004): 0.005032): 0.177628, ((27: 0.086656, (15: 0.010463, 23: 0.020789, 29: 0.005167): 0.109887): 0.056437, (30: 0.102299, 2: 0.081752): 0.083593): 0.062387): 0.397766, 7: 0.228690): 0.251949, 9: 0.316917): 0.132007, (16: 0.118009, 14: 0.087317): 0.018407): 0.041782, (18: 0.063672, 24: 0.050385): 0.090239): 0.089449, (17: 0.000004, (4: 0.000004, 5: 0.004943): 0.000004, 19: 0.000004): 0.035117): 0.076349): 0.010997, 8: 0.000004, 10: 0.004969): 0.004979);
(C67: 0.000004, C61: 0.000004, ((C66: 0.019442, (((((((C11: 0.000004, C1: 0.000004, C27: 0.000004, C32: 0.000004, C26: 0.005070): 0.130735, (C19: 0.000004, C20: 0.000004, (C22: 0.000004, C21: 0.000004): 0.005032): 0.177628, ((C78: 0.086656, (C81: 0.010463, C88: 0.020789, C89: 0.005167): 0.109887): 0.056437, (C30: 0.102299, C12: 0.081752): 0.083593): 0.062387): 0.397766, C99: 0.228690): 0.251949, C5: 0.316917): 0.132007, (C13: 0.118009, C38: 0.087317): 0.018407): 0.041782, (C16: 0.063672, C2: 0.050385): 0.090239): 0.089449, (C14: 0.000004, (C58: 0.000004, C36: 0.004943): 0.000004, C100: 0.000004): 0.035117): 0.076349): 0.010997, C60: 0.000004, C72: 0.004969): 0.004979);
Detailed output identifying parameters
kappa (ts/tv) = 2.52242
MLEs of dN/dS (w) for site classes (K=2)
p: 0.89025 0.10975
w: 0.04918 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 481.5 160.5 0.1535 0.0000 0.0000 0.0 0.0
31..6 0.000 481.5 160.5 0.1535 0.0000 0.0000 0.0 0.0
31..32 0.005 481.5 160.5 0.1535 0.0007 0.0045 0.3 0.7
32..33 0.011 481.5 160.5 0.1535 0.0015 0.0100 0.7 1.6
33..11 0.019 481.5 160.5 0.1535 0.0027 0.0177 1.3 2.8
33..34 0.076 481.5 160.5 0.1535 0.0107 0.0697 5.2 11.2
34..35 0.089 481.5 160.5 0.1535 0.0125 0.0816 6.0 13.1
35..36 0.042 481.5 160.5 0.1535 0.0059 0.0381 2.8 6.1
36..37 0.132 481.5 160.5 0.1535 0.0185 0.1205 8.9 19.3
37..38 0.252 481.5 160.5 0.1535 0.0353 0.2300 17.0 36.9
38..39 0.398 481.5 160.5 0.1535 0.0557 0.3631 26.8 58.3
39..40 0.131 481.5 160.5 0.1535 0.0183 0.1193 8.8 19.2
40..13 0.000 481.5 160.5 0.1535 0.0000 0.0000 0.0 0.0
40..1 0.000 481.5 160.5 0.1535 0.0000 0.0000 0.0 0.0
40..20 0.000 481.5 160.5 0.1535 0.0000 0.0000 0.0 0.0
40..25 0.000 481.5 160.5 0.1535 0.0000 0.0000 0.0 0.0
40..28 0.005 481.5 160.5 0.1535 0.0007 0.0046 0.3 0.7
39..41 0.178 481.5 160.5 0.1535 0.0249 0.1621 12.0 26.0
41..22 0.000 481.5 160.5 0.1535 0.0000 0.0000 0.0 0.0
41..21 0.000 481.5 160.5 0.1535 0.0000 0.0000 0.0 0.0
41..42 0.005 481.5 160.5 0.1535 0.0007 0.0046 0.3 0.7
42..26 0.000 481.5 160.5 0.1535 0.0000 0.0000 0.0 0.0
42..3 0.000 481.5 160.5 0.1535 0.0000 0.0000 0.0 0.0
39..43 0.062 481.5 160.5 0.1535 0.0087 0.0569 4.2 9.1
43..44 0.056 481.5 160.5 0.1535 0.0079 0.0515 3.8 8.3
44..27 0.087 481.5 160.5 0.1535 0.0121 0.0791 5.8 12.7
44..45 0.110 481.5 160.5 0.1535 0.0154 0.1003 7.4 16.1
45..15 0.010 481.5 160.5 0.1535 0.0015 0.0095 0.7 1.5
45..23 0.021 481.5 160.5 0.1535 0.0029 0.0190 1.4 3.0
45..29 0.005 481.5 160.5 0.1535 0.0007 0.0047 0.3 0.8
43..46 0.084 481.5 160.5 0.1535 0.0117 0.0763 5.6 12.2
46..30 0.102 481.5 160.5 0.1535 0.0143 0.0934 6.9 15.0
46..2 0.082 481.5 160.5 0.1535 0.0115 0.0746 5.5 12.0
38..7 0.229 481.5 160.5 0.1535 0.0320 0.2087 15.4 33.5
37..9 0.317 481.5 160.5 0.1535 0.0444 0.2893 21.4 46.4
36..47 0.018 481.5 160.5 0.1535 0.0026 0.0168 1.2 2.7
47..16 0.118 481.5 160.5 0.1535 0.0165 0.1077 8.0 17.3
47..14 0.087 481.5 160.5 0.1535 0.0122 0.0797 5.9 12.8
35..48 0.090 481.5 160.5 0.1535 0.0126 0.0824 6.1 13.2
48..18 0.064 481.5 160.5 0.1535 0.0089 0.0581 4.3 9.3
48..24 0.050 481.5 160.5 0.1535 0.0071 0.0460 3.4 7.4
34..49 0.035 481.5 160.5 0.1535 0.0049 0.0321 2.4 5.1
49..17 0.000 481.5 160.5 0.1535 0.0000 0.0000 0.0 0.0
49..50 0.000 481.5 160.5 0.1535 0.0000 0.0000 0.0 0.0
50..4 0.000 481.5 160.5 0.1535 0.0000 0.0000 0.0 0.0
50..5 0.005 481.5 160.5 0.1535 0.0007 0.0045 0.3 0.7
49..19 0.000 481.5 160.5 0.1535 0.0000 0.0000 0.0 0.0
32..8 0.000 481.5 160.5 0.1535 0.0000 0.0000 0.0 0.0
32..10 0.005 481.5 160.5 0.1535 0.0007 0.0045 0.3 0.7
Time used: 6:13
Model 2: PositiveSelection (3 categories)
TREE # 1: (12, 6, ((11, (((((((13, 1, 20, 25, 28), (22, 21, (26, 3)), ((27, (15, 23, 29)), (30, 2))), 7), 9), (16, 14)), (18, 24)), (17, (4, 5), 19))), 8, 10)); MP score: 423
lnL(ntime: 49 np: 54): -3113.921510 +0.000000
31..12 31..6 31..32 32..33 33..11 33..34 34..35 35..36 36..37 37..38 38..39 39..40 40..13 40..1 40..20 40..25 40..28 39..41 41..22 41..21 41..42 42..26 42..3 39..43 43..44 44..27 44..45 45..15 45..23 45..29 43..46 46..30 46..2 38..7 37..9 36..47 47..16 47..14 35..48 48..18 48..24 34..49 49..17 49..50 50..4 50..5 49..19 32..8 32..10
0.000004 0.000004 0.004953 0.011008 0.019346 0.076664 0.092557 0.040356 0.159481 0.294929 0.431156 0.140340 0.000004 0.000004 0.000004 0.000004 0.005058 0.184105 0.000004 0.000004 0.005026 0.000004 0.000004 0.060047 0.062622 0.095526 0.108240 0.010572 0.021100 0.005218 0.085452 0.101898 0.087629 0.260159 0.310910 0.021305 0.116694 0.089361 0.089053 0.062864 0.050985 0.035017 0.000004 0.000004 0.000004 0.004915 0.000004 0.000004 0.004945 2.752684 0.887046 0.090041 0.052828 3.904690
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 3.149553
(12: 0.000004, 6: 0.000004, ((11: 0.019346, (((((((13: 0.000004, 1: 0.000004, 20: 0.000004, 25: 0.000004, 28: 0.005058): 0.140340, (22: 0.000004, 21: 0.000004, (26: 0.000004, 3: 0.000004): 0.005026): 0.184105, ((27: 0.095526, (15: 0.010572, 23: 0.021100, 29: 0.005218): 0.108240): 0.062622, (30: 0.101898, 2: 0.087629): 0.085452): 0.060047): 0.431156, 7: 0.260159): 0.294929, 9: 0.310910): 0.159481, (16: 0.116694, 14: 0.089361): 0.021305): 0.040356, (18: 0.062864, 24: 0.050985): 0.089053): 0.092557, (17: 0.000004, (4: 0.000004, 5: 0.004915): 0.000004, 19: 0.000004): 0.035017): 0.076664): 0.011008, 8: 0.000004, 10: 0.004945): 0.004953);
(C67: 0.000004, C61: 0.000004, ((C66: 0.019346, (((((((C11: 0.000004, C1: 0.000004, C27: 0.000004, C32: 0.000004, C26: 0.005058): 0.140340, (C19: 0.000004, C20: 0.000004, (C22: 0.000004, C21: 0.000004): 0.005026): 0.184105, ((C78: 0.095526, (C81: 0.010572, C88: 0.021100, C89: 0.005218): 0.108240): 0.062622, (C30: 0.101898, C12: 0.087629): 0.085452): 0.060047): 0.431156, C99: 0.260159): 0.294929, C5: 0.310910): 0.159481, (C13: 0.116694, C38: 0.089361): 0.021305): 0.040356, (C16: 0.062864, C2: 0.050985): 0.089053): 0.092557, (C14: 0.000004, (C58: 0.000004, C36: 0.004915): 0.000004, C100: 0.000004): 0.035017): 0.076664): 0.011008, C60: 0.000004, C72: 0.004945): 0.004953);
Detailed output identifying parameters
kappa (ts/tv) = 2.75268
MLEs of dN/dS (w) for site classes (K=3)
p: 0.88705 0.09004 0.02291
w: 0.05283 1.00000 3.90469
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 479.8 162.2 0.2264 0.0000 0.0000 0.0 0.0
31..6 0.000 479.8 162.2 0.2264 0.0000 0.0000 0.0 0.0
31..32 0.005 479.8 162.2 0.2264 0.0009 0.0039 0.4 0.6
32..33 0.011 479.8 162.2 0.2264 0.0020 0.0087 0.9 1.4
33..11 0.019 479.8 162.2 0.2264 0.0035 0.0153 1.7 2.5
33..34 0.077 479.8 162.2 0.2264 0.0137 0.0606 6.6 9.8
34..35 0.093 479.8 162.2 0.2264 0.0166 0.0731 7.9 11.9
35..36 0.040 479.8 162.2 0.2264 0.0072 0.0319 3.5 5.2
36..37 0.159 479.8 162.2 0.2264 0.0285 0.1260 13.7 20.4
37..38 0.295 479.8 162.2 0.2264 0.0528 0.2331 25.3 37.8
38..39 0.431 479.8 162.2 0.2264 0.0771 0.3407 37.0 55.3
39..40 0.140 479.8 162.2 0.2264 0.0251 0.1109 12.0 18.0
40..13 0.000 479.8 162.2 0.2264 0.0000 0.0000 0.0 0.0
40..1 0.000 479.8 162.2 0.2264 0.0000 0.0000 0.0 0.0
40..20 0.000 479.8 162.2 0.2264 0.0000 0.0000 0.0 0.0
40..25 0.000 479.8 162.2 0.2264 0.0000 0.0000 0.0 0.0
40..28 0.005 479.8 162.2 0.2264 0.0009 0.0040 0.4 0.6
39..41 0.184 479.8 162.2 0.2264 0.0329 0.1455 15.8 23.6
41..22 0.000 479.8 162.2 0.2264 0.0000 0.0000 0.0 0.0
41..21 0.000 479.8 162.2 0.2264 0.0000 0.0000 0.0 0.0
41..42 0.005 479.8 162.2 0.2264 0.0009 0.0040 0.4 0.6
42..26 0.000 479.8 162.2 0.2264 0.0000 0.0000 0.0 0.0
42..3 0.000 479.8 162.2 0.2264 0.0000 0.0000 0.0 0.0
39..43 0.060 479.8 162.2 0.2264 0.0107 0.0475 5.2 7.7
43..44 0.063 479.8 162.2 0.2264 0.0112 0.0495 5.4 8.0
44..27 0.096 479.8 162.2 0.2264 0.0171 0.0755 8.2 12.2
44..45 0.108 479.8 162.2 0.2264 0.0194 0.0855 9.3 13.9
45..15 0.011 479.8 162.2 0.2264 0.0019 0.0084 0.9 1.4
45..23 0.021 479.8 162.2 0.2264 0.0038 0.0167 1.8 2.7
45..29 0.005 479.8 162.2 0.2264 0.0009 0.0041 0.4 0.7
43..46 0.085 479.8 162.2 0.2264 0.0153 0.0675 7.3 11.0
46..30 0.102 479.8 162.2 0.2264 0.0182 0.0805 8.7 13.1
46..2 0.088 479.8 162.2 0.2264 0.0157 0.0693 7.5 11.2
38..7 0.260 479.8 162.2 0.2264 0.0465 0.2056 22.3 33.3
37..9 0.311 479.8 162.2 0.2264 0.0556 0.2457 26.7 39.8
36..47 0.021 479.8 162.2 0.2264 0.0038 0.0168 1.8 2.7
47..16 0.117 479.8 162.2 0.2264 0.0209 0.0922 10.0 15.0
47..14 0.089 479.8 162.2 0.2264 0.0160 0.0706 7.7 11.5
35..48 0.089 479.8 162.2 0.2264 0.0159 0.0704 7.6 11.4
48..18 0.063 479.8 162.2 0.2264 0.0112 0.0497 5.4 8.1
48..24 0.051 479.8 162.2 0.2264 0.0091 0.0403 4.4 6.5
34..49 0.035 479.8 162.2 0.2264 0.0063 0.0277 3.0 4.5
49..17 0.000 479.8 162.2 0.2264 0.0000 0.0000 0.0 0.0
49..50 0.000 479.8 162.2 0.2264 0.0000 0.0000 0.0 0.0
50..4 0.000 479.8 162.2 0.2264 0.0000 0.0000 0.0 0.0
50..5 0.005 479.8 162.2 0.2264 0.0009 0.0039 0.4 0.6
49..19 0.000 479.8 162.2 0.2264 0.0000 0.0000 0.0 0.0
32..8 0.000 479.8 162.2 0.2264 0.0000 0.0000 0.0 0.0
32..10 0.005 479.8 162.2 0.2264 0.0009 0.0039 0.4 0.6
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
23 S 0.935 3.715
24 G 0.945 3.745
25 L 0.993** 3.883
31 N 0.868 3.520
32 S 0.965* 3.802
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
23 S 0.935 3.950 +- 1.262
24 G 0.937 3.936 +- 1.236
25 L 0.991** 4.123 +- 1.064
31 N 0.850 3.625 +- 1.428
32 S 0.963* 4.046 +- 1.170
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.001 0.096 0.389 0.339 0.130 0.034 0.008 0.002 0.001 0.000
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.001 0.892
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.065 0.042
sum of density on p0-p1 = 1.000000
Time used: 15:18
Model 7: beta (10 categories)
TREE # 1: (12, 6, ((11, (((((((13, 1, 20, 25, 28), (22, 21, (26, 3)), ((27, (15, 23, 29)), (30, 2))), 7), 9), (16, 14)), (18, 24)), (17, (4, 5), 19))), 8, 10)); MP score: 423
lnL(ntime: 49 np: 52): -3114.255331 +0.000000
31..12 31..6 31..32 32..33 33..11 33..34 34..35 35..36 36..37 37..38 38..39 39..40 40..13 40..1 40..20 40..25 40..28 39..41 41..22 41..21 41..42 42..26 42..3 39..43 43..44 44..27 44..45 45..15 45..23 45..29 43..46 46..30 46..2 38..7 37..9 36..47 47..16 47..14 35..48 48..18 48..24 34..49 49..17 49..50 50..4 50..5 49..19 32..8 32..10
0.000004 0.000004 0.005127 0.011362 0.019996 0.079570 0.092146 0.043729 0.131825 0.264176 0.414105 0.134283 0.000004 0.000004 0.000004 0.000004 0.005231 0.182629 0.000004 0.000004 0.005204 0.000004 0.000004 0.064541 0.058729 0.088797 0.112939 0.010767 0.021370 0.005323 0.085226 0.105186 0.083714 0.233381 0.333321 0.019101 0.122461 0.089149 0.092927 0.065990 0.052159 0.035512 0.000004 0.000004 0.000004 0.005113 0.000004 0.000004 0.005116 2.463536 0.117434 0.648293
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 3.080265
(12: 0.000004, 6: 0.000004, ((11: 0.019996, (((((((13: 0.000004, 1: 0.000004, 20: 0.000004, 25: 0.000004, 28: 0.005231): 0.134283, (22: 0.000004, 21: 0.000004, (26: 0.000004, 3: 0.000004): 0.005204): 0.182629, ((27: 0.088797, (15: 0.010767, 23: 0.021370, 29: 0.005323): 0.112939): 0.058729, (30: 0.105186, 2: 0.083714): 0.085226): 0.064541): 0.414105, 7: 0.233381): 0.264176, 9: 0.333321): 0.131825, (16: 0.122461, 14: 0.089149): 0.019101): 0.043729, (18: 0.065990, 24: 0.052159): 0.092927): 0.092146, (17: 0.000004, (4: 0.000004, 5: 0.005113): 0.000004, 19: 0.000004): 0.035512): 0.079570): 0.011362, 8: 0.000004, 10: 0.005116): 0.005127);
(C67: 0.000004, C61: 0.000004, ((C66: 0.019996, (((((((C11: 0.000004, C1: 0.000004, C27: 0.000004, C32: 0.000004, C26: 0.005231): 0.134283, (C19: 0.000004, C20: 0.000004, (C22: 0.000004, C21: 0.000004): 0.005204): 0.182629, ((C78: 0.088797, (C81: 0.010767, C88: 0.021370, C89: 0.005323): 0.112939): 0.058729, (C30: 0.105186, C12: 0.083714): 0.085226): 0.064541): 0.414105, C99: 0.233381): 0.264176, C5: 0.333321): 0.131825, (C13: 0.122461, C38: 0.089149): 0.019101): 0.043729, (C16: 0.065990, C2: 0.052159): 0.092927): 0.092146, (C14: 0.000004, (C58: 0.000004, C36: 0.005113): 0.000004, C100: 0.000004): 0.035512): 0.079570): 0.011362, C60: 0.000004, C72: 0.005116): 0.005127);
Detailed output identifying parameters
kappa (ts/tv) = 2.46354
Parameters in M7 (beta):
p = 0.11743 q = 0.64829
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00000 0.00000 0.00002 0.00027 0.00228 0.01257 0.05148 0.16737 0.43616 0.85596
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 481.9 160.1 0.1526 0.0000 0.0000 0.0 0.0
31..6 0.000 481.9 160.1 0.1526 0.0000 0.0000 0.0 0.0
31..32 0.005 481.9 160.1 0.1526 0.0007 0.0047 0.3 0.8
32..33 0.011 481.9 160.1 0.1526 0.0016 0.0104 0.8 1.7
33..11 0.020 481.9 160.1 0.1526 0.0028 0.0183 1.3 2.9
33..34 0.080 481.9 160.1 0.1526 0.0111 0.0729 5.4 11.7
34..35 0.092 481.9 160.1 0.1526 0.0129 0.0844 6.2 13.5
35..36 0.044 481.9 160.1 0.1526 0.0061 0.0401 2.9 6.4
36..37 0.132 481.9 160.1 0.1526 0.0184 0.1208 8.9 19.3
37..38 0.264 481.9 160.1 0.1526 0.0369 0.2420 17.8 38.7
38..39 0.414 481.9 160.1 0.1526 0.0579 0.3793 27.9 60.7
39..40 0.134 481.9 160.1 0.1526 0.0188 0.1230 9.0 19.7
40..13 0.000 481.9 160.1 0.1526 0.0000 0.0000 0.0 0.0
40..1 0.000 481.9 160.1 0.1526 0.0000 0.0000 0.0 0.0
40..20 0.000 481.9 160.1 0.1526 0.0000 0.0000 0.0 0.0
40..25 0.000 481.9 160.1 0.1526 0.0000 0.0000 0.0 0.0
40..28 0.005 481.9 160.1 0.1526 0.0007 0.0048 0.4 0.8
39..41 0.183 481.9 160.1 0.1526 0.0255 0.1673 12.3 26.8
41..22 0.000 481.9 160.1 0.1526 0.0000 0.0000 0.0 0.0
41..21 0.000 481.9 160.1 0.1526 0.0000 0.0000 0.0 0.0
41..42 0.005 481.9 160.1 0.1526 0.0007 0.0048 0.4 0.8
42..26 0.000 481.9 160.1 0.1526 0.0000 0.0000 0.0 0.0
42..3 0.000 481.9 160.1 0.1526 0.0000 0.0000 0.0 0.0
39..43 0.065 481.9 160.1 0.1526 0.0090 0.0591 4.3 9.5
43..44 0.059 481.9 160.1 0.1526 0.0082 0.0538 4.0 8.6
44..27 0.089 481.9 160.1 0.1526 0.0124 0.0813 6.0 13.0
44..45 0.113 481.9 160.1 0.1526 0.0158 0.1035 7.6 16.6
45..15 0.011 481.9 160.1 0.1526 0.0015 0.0099 0.7 1.6
45..23 0.021 481.9 160.1 0.1526 0.0030 0.0196 1.4 3.1
45..29 0.005 481.9 160.1 0.1526 0.0007 0.0049 0.4 0.8
43..46 0.085 481.9 160.1 0.1526 0.0119 0.0781 5.7 12.5
46..30 0.105 481.9 160.1 0.1526 0.0147 0.0963 7.1 15.4
46..2 0.084 481.9 160.1 0.1526 0.0117 0.0767 5.6 12.3
38..7 0.233 481.9 160.1 0.1526 0.0326 0.2138 15.7 34.2
37..9 0.333 481.9 160.1 0.1526 0.0466 0.3053 22.5 48.9
36..47 0.019 481.9 160.1 0.1526 0.0027 0.0175 1.3 2.8
47..16 0.122 481.9 160.1 0.1526 0.0171 0.1122 8.2 18.0
47..14 0.089 481.9 160.1 0.1526 0.0125 0.0817 6.0 13.1
35..48 0.093 481.9 160.1 0.1526 0.0130 0.0851 6.3 13.6
48..18 0.066 481.9 160.1 0.1526 0.0092 0.0604 4.4 9.7
48..24 0.052 481.9 160.1 0.1526 0.0073 0.0478 3.5 7.6
34..49 0.036 481.9 160.1 0.1526 0.0050 0.0325 2.4 5.2
49..17 0.000 481.9 160.1 0.1526 0.0000 0.0000 0.0 0.0
49..50 0.000 481.9 160.1 0.1526 0.0000 0.0000 0.0 0.0
50..4 0.000 481.9 160.1 0.1526 0.0000 0.0000 0.0 0.0
50..5 0.005 481.9 160.1 0.1526 0.0007 0.0047 0.3 0.7
49..19 0.000 481.9 160.1 0.1526 0.0000 0.0000 0.0 0.0
32..8 0.000 481.9 160.1 0.1526 0.0000 0.0000 0.0 0.0
32..10 0.005 481.9 160.1 0.1526 0.0007 0.0047 0.3 0.8
Time used: 44:36
Model 8: beta&w>1 (11 categories)
TREE # 1: (12, 6, ((11, (((((((13, 1, 20, 25, 28), (22, 21, (26, 3)), ((27, (15, 23, 29)), (30, 2))), 7), 9), (16, 14)), (18, 24)), (17, (4, 5), 19))), 8, 10)); MP score: 423
check convergence..
lnL(ntime: 49 np: 54): -3097.692840 +0.000000
31..12 31..6 31..32 32..33 33..11 33..34 34..35 35..36 36..37 37..38 38..39 39..40 40..13 40..1 40..20 40..25 40..28 39..41 41..22 41..21 41..42 42..26 42..3 39..43 43..44 44..27 44..45 45..15 45..23 45..29 43..46 46..30 46..2 38..7 37..9 36..47 47..16 47..14 35..48 48..18 48..24 34..49 49..17 49..50 50..4 50..5 49..19 32..8 32..10
0.000004 0.000004 0.004947 0.010967 0.019335 0.077124 0.090663 0.040773 0.152099 0.286263 0.419443 0.132257 0.000004 0.000004 0.000004 0.000004 0.005085 0.183362 0.000004 0.000004 0.005065 0.000004 0.000004 0.060853 0.061992 0.092101 0.108922 0.010594 0.021099 0.005223 0.084708 0.101781 0.085464 0.249728 0.311613 0.020207 0.116220 0.086691 0.088735 0.062555 0.050490 0.034340 0.000004 0.000004 0.000004 0.004916 0.000004 0.000004 0.004937 2.646482 0.964554 0.223400 2.191218 2.574898
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 3.090612
(12: 0.000004, 6: 0.000004, ((11: 0.019335, (((((((13: 0.000004, 1: 0.000004, 20: 0.000004, 25: 0.000004, 28: 0.005085): 0.132257, (22: 0.000004, 21: 0.000004, (26: 0.000004, 3: 0.000004): 0.005065): 0.183362, ((27: 0.092101, (15: 0.010594, 23: 0.021099, 29: 0.005223): 0.108922): 0.061992, (30: 0.101781, 2: 0.085464): 0.084708): 0.060853): 0.419443, 7: 0.249728): 0.286263, 9: 0.311613): 0.152099, (16: 0.116220, 14: 0.086691): 0.020207): 0.040773, (18: 0.062555, 24: 0.050490): 0.088735): 0.090663, (17: 0.000004, (4: 0.000004, 5: 0.004916): 0.000004, 19: 0.000004): 0.034340): 0.077124): 0.010967, 8: 0.000004, 10: 0.004937): 0.004947);
(C67: 0.000004, C61: 0.000004, ((C66: 0.019335, (((((((C11: 0.000004, C1: 0.000004, C27: 0.000004, C32: 0.000004, C26: 0.005085): 0.132257, (C19: 0.000004, C20: 0.000004, (C22: 0.000004, C21: 0.000004): 0.005065): 0.183362, ((C78: 0.092101, (C81: 0.010594, C88: 0.021099, C89: 0.005223): 0.108922): 0.061992, (C30: 0.101781, C12: 0.085464): 0.084708): 0.060853): 0.419443, C99: 0.249728): 0.286263, C5: 0.311613): 0.152099, (C13: 0.116220, C38: 0.086691): 0.020207): 0.040773, (C16: 0.062555, C2: 0.050490): 0.088735): 0.090663, (C14: 0.000004, (C58: 0.000004, C36: 0.004916): 0.000004, C100: 0.000004): 0.034340): 0.077124): 0.010967, C60: 0.000004, C72: 0.004937): 0.004947);
Detailed output identifying parameters
kappa (ts/tv) = 2.64648
Parameters in M8 (beta&w>1):
p0 = 0.96455 p = 0.22340 q = 2.19122
(p1 = 0.03545) w = 2.57490
MLEs of dN/dS (w) for site classes (K=11)
p: 0.09646 0.09646 0.09646 0.09646 0.09646 0.09646 0.09646 0.09646 0.09646 0.09646 0.03545
w: 0.00000 0.00007 0.00073 0.00332 0.01029 0.02566 0.05582 0.11191 0.21763 0.45458 2.57490
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
31..12 0.000 480.6 161.4 0.1762 0.0000 0.0000 0.0 0.0
31..6 0.000 480.6 161.4 0.1762 0.0000 0.0000 0.0 0.0
31..32 0.005 480.6 161.4 0.1762 0.0008 0.0043 0.4 0.7
32..33 0.011 480.6 161.4 0.1762 0.0017 0.0095 0.8 1.5
33..11 0.019 480.6 161.4 0.1762 0.0030 0.0168 1.4 2.7
33..34 0.077 480.6 161.4 0.1762 0.0118 0.0671 5.7 10.8
34..35 0.091 480.6 161.4 0.1762 0.0139 0.0788 6.7 12.7
35..36 0.041 480.6 161.4 0.1762 0.0062 0.0355 3.0 5.7
36..37 0.152 480.6 161.4 0.1762 0.0233 0.1323 11.2 21.4
37..38 0.286 480.6 161.4 0.1762 0.0439 0.2489 21.1 40.2
38..39 0.419 480.6 161.4 0.1762 0.0643 0.3648 30.9 58.9
39..40 0.132 480.6 161.4 0.1762 0.0203 0.1150 9.7 18.6
40..13 0.000 480.6 161.4 0.1762 0.0000 0.0000 0.0 0.0
40..1 0.000 480.6 161.4 0.1762 0.0000 0.0000 0.0 0.0
40..20 0.000 480.6 161.4 0.1762 0.0000 0.0000 0.0 0.0
40..25 0.000 480.6 161.4 0.1762 0.0000 0.0000 0.0 0.0
40..28 0.005 480.6 161.4 0.1762 0.0008 0.0044 0.4 0.7
39..41 0.183 480.6 161.4 0.1762 0.0281 0.1595 13.5 25.7
41..22 0.000 480.6 161.4 0.1762 0.0000 0.0000 0.0 0.0
41..21 0.000 480.6 161.4 0.1762 0.0000 0.0000 0.0 0.0
41..42 0.005 480.6 161.4 0.1762 0.0008 0.0044 0.4 0.7
42..26 0.000 480.6 161.4 0.1762 0.0000 0.0000 0.0 0.0
42..3 0.000 480.6 161.4 0.1762 0.0000 0.0000 0.0 0.0
39..43 0.061 480.6 161.4 0.1762 0.0093 0.0529 4.5 8.5
43..44 0.062 480.6 161.4 0.1762 0.0095 0.0539 4.6 8.7
44..27 0.092 480.6 161.4 0.1762 0.0141 0.0801 6.8 12.9
44..45 0.109 480.6 161.4 0.1762 0.0167 0.0947 8.0 15.3
45..15 0.011 480.6 161.4 0.1762 0.0016 0.0092 0.8 1.5
45..23 0.021 480.6 161.4 0.1762 0.0032 0.0183 1.6 3.0
45..29 0.005 480.6 161.4 0.1762 0.0008 0.0045 0.4 0.7
43..46 0.085 480.6 161.4 0.1762 0.0130 0.0737 6.2 11.9
46..30 0.102 480.6 161.4 0.1762 0.0156 0.0885 7.5 14.3
46..2 0.085 480.6 161.4 0.1762 0.0131 0.0743 6.3 12.0
38..7 0.250 480.6 161.4 0.1762 0.0383 0.2172 18.4 35.1
37..9 0.312 480.6 161.4 0.1762 0.0477 0.2710 22.9 43.7
36..47 0.020 480.6 161.4 0.1762 0.0031 0.0176 1.5 2.8
47..16 0.116 480.6 161.4 0.1762 0.0178 0.1011 8.6 16.3
47..14 0.087 480.6 161.4 0.1762 0.0133 0.0754 6.4 12.2
35..48 0.089 480.6 161.4 0.1762 0.0136 0.0772 6.5 12.5
48..18 0.063 480.6 161.4 0.1762 0.0096 0.0544 4.6 8.8
48..24 0.050 480.6 161.4 0.1762 0.0077 0.0439 3.7 7.1
34..49 0.034 480.6 161.4 0.1762 0.0053 0.0299 2.5 4.8
49..17 0.000 480.6 161.4 0.1762 0.0000 0.0000 0.0 0.0
49..50 0.000 480.6 161.4 0.1762 0.0000 0.0000 0.0 0.0
50..4 0.000 480.6 161.4 0.1762 0.0000 0.0000 0.0 0.0
50..5 0.005 480.6 161.4 0.1762 0.0008 0.0043 0.4 0.7
49..19 0.000 480.6 161.4 0.1762 0.0000 0.0000 0.0 0.0
32..8 0.000 480.6 161.4 0.1762 0.0000 0.0000 0.0 0.0
32..10 0.005 480.6 161.4 0.1762 0.0008 0.0043 0.4 0.7
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
22 Q 0.666 1.861
23 S 0.999** 2.574
24 G 0.999** 2.573
25 L 1.000** 2.575
31 N 0.999** 2.573
32 S 1.000** 2.574
33 R 0.820 2.193
104 Q 0.762 2.068
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
22 Q 0.534 1.741 +- 1.037
23 S 0.993** 2.884 +- 0.700
24 G 0.994** 2.885 +- 0.698
25 L 0.999** 2.896 +- 0.684
31 N 0.988* 2.871 +- 0.710
32 S 0.995** 2.888 +- 0.696
33 R 0.594 1.888 +- 1.007
104 Q 0.567 1.825 +- 1.019
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000
p : 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.000 0.010 0.084 0.195 0.241 0.213 0.155 0.101
ws: 0.017 0.649 0.266 0.056 0.010 0.001 0.000 0.000 0.000 0.000
Time used: 1:19:06
Model 1: NearlyNeutral -3122.166428
Model 2: PositiveSelection -3113.921510
Model 7: beta -3114.255331
Model 8: beta&w>1 -3097.692840
Model 2 vs 1 16.489836
Additional information for M1 vs M2:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
23 S 0.935 3.715
24 G 0.945 3.745
25 L 0.993** 3.883
31 N 0.868 3.520
32 S 0.965* 3.802
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
23 S 0.935 3.950 +- 1.262
24 G 0.937 3.936 +- 1.236
25 L 0.991** 4.123 +- 1.064
31 N 0.850 3.625 +- 1.428
32 S 0.963* 4.046 +- 1.170
Model 8 vs 7 33.124982
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
22 Q 0.666 1.861
23 S 0.999** 2.574
24 G 0.999** 2.573
25 L 1.000** 2.575
31 N 0.999** 2.573
32 S 1.000** 2.574
33 R 0.820 2.193
104 Q 0.762 2.068
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
22 Q 0.534 1.741 +- 1.037
23 S 0.993** 2.884 +- 0.700
24 G 0.994** 2.885 +- 0.698
25 L 0.999** 2.896 +- 0.684
31 N 0.988* 2.871 +- 0.710
32 S 0.995** 2.888 +- 0.696
33 R 0.594 1.888 +- 1.007
104 Q 0.567 1.825 +- 1.019
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
