--- EXPERIMENT NOTES
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken.
#
### General parameters ###
#
# The maximum number of sequences to use for the master file
sequence_limit=90
# The random seed
random_seed=3976763
#
### Alignment ###
#
# The alignment method: clustalw, muscle, kalign, t_coffee, or amap
align_method=muscle
# Minimum support value for amino acid positions in the alignment
tcoffee_min_score=3
#
### MrBayes ###
#
# Number of iterations in MrBayes
mrbayes_generations=1000000
# MrBayes burnin
mrbayes_burnin=2500
#
### FUBAR ###
#
# The maximum number of sequences to be used by FUBAR.
fubar_sequence_limit=90
# The number of FUBAR runs
fubar_runs=1
#
### codeML ###
#
# The maximum number of sequences to be used by CodeML
codeml_sequence_limit=30
# The number of CodeML runs
codeml_runs=1
# The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'.
codeml_models=1 2 7 8
#
### OmegaMap ###
#
# The maximum number of sequences to use in OmegaMap
omegamap_sequence_limit=90
# The number of OmegaMap runs
omegamap_runs=1
# The number of OmegaMap iterations
omegamap_iterations=2500
--- EXPERIMENT PROPERTIES
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -3205.21 -3226.33
2 -3206.25 -3226.28
--------------------------------------
TOTAL -3205.60 -3226.30
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.512965 0.031626 1.169827 1.860256 1.498198 917.82 986.11 1.000
r(A<->C){all} 0.097816 0.000430 0.056374 0.136804 0.096744 758.98 865.18 1.000
r(A<->G){all} 0.267610 0.001226 0.204683 0.339859 0.265897 556.54 680.42 1.003
r(A<->T){all} 0.038659 0.000110 0.019753 0.059375 0.037635 1083.94 1127.07 1.000
r(C<->G){all} 0.010223 0.000081 0.000009 0.028096 0.007731 759.85 766.09 1.000
r(C<->T){all} 0.509992 0.001623 0.431701 0.586344 0.509641 447.62 672.56 1.002
r(G<->T){all} 0.075701 0.000189 0.050824 0.103782 0.074695 820.92 869.86 1.000
pi(A){all} 0.253632 0.000168 0.227566 0.278333 0.253579 1063.47 1137.36 1.000
pi(C){all} 0.164283 0.000100 0.145317 0.184251 0.163997 791.32 977.30 1.000
pi(G){all} 0.194912 0.000136 0.171938 0.217666 0.194600 1009.73 1115.43 1.001
pi(T){all} 0.387174 0.000197 0.361025 0.415676 0.387253 768.66 1007.14 1.001
alpha{1,2} 0.204198 0.000790 0.153472 0.259952 0.200955 1274.58 1298.88 1.000
alpha{3} 4.903313 2.726122 2.124069 8.211113 4.683804 1313.09 1371.19 1.000
pinvar{all} 0.228860 0.002517 0.128393 0.327870 0.231880 1267.65 1323.04 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
--- CODEML SUMMARY
Model 1: NearlyNeutral -2911.930255
Model 2: PositiveSelection -2911.930255
Model 7: beta -2897.171559
Model 8: beta&w>1 -2897.174340
Model 2 vs 1 0
Model 8 vs 7 -.005562
-- Starting log on Wed Nov 09 22:46:34 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.07 sec, SCORE=1000, Nseq=13, Len=303
C1 ---SGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITT
C2 ---SGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITT
C3 ---AGKVTSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTT
C4 ----GKVKSLFYPVMTAIAILFAFWLEFFMYTPFTWINPTFVSIILAITT
C5 ---SGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITT
C6 ---SGKVKSLFYPMMTAVAILFSFWLEFFMYTPFTWINPSFVSVILAITT
C7 NLQSGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITT
C8 ---SGKVKSLFYPVMTAMAILFAFWLEFFMYTPFTWINPTFVSAILAITT
C9 ---AGKVKSFFYPIVTAMTILFAFWLEFFMYTPFTWINPAFVSFVLAVTT
C10 ---AGKVKSFFYPIVTAMTILFAFWLEFFMYTPFTWINPAFVSFVLAVTT
C11 ---AGKVKSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTT
C12 ---AGKVKSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTT
C13 ----------FYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTT
***::**::***:****************:*** :**:**
C1 LVSVLLVAGIKHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENV
C2 LVSVLLVAGIKHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENV
C3 LISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENT
C4 LVSVLLVAGIKHKMLFFMSFVMPSVVLATAHNFVWDMTCYESLQVLVENV
C5 LVSVLLVAGIKHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENV
C6 IFSVLLVAGIKHKMLFFMSFVMPSVVLSTVHNVVWDMTYYESLQVLVENT
C7 LVSVLLVAGIKHKMLFFMSFVMPSVILVTAHNVVWDMTYYESLQVLVENV
C8 LVSVMLVAGIKHKMLFFMSFVMPSVVLATVHNVVWDMTYYESLQVLVENV
C9 LVSTVFVSGIKHKMLFFMSFVLPSVVLVTAHNLFWDFSYYESLQSIVENT
C10 LVSTVFVSGIKHKMLFFMSFVLPSVVLVTAHNLFWDFSYYESLQSIVENT
C11 LISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENT
C12 LISTFFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENT
C13 LISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENT
:.*..:*:*************:***:* *.**..**:: ***** :***.
C1 NTTFLPVDMQGVMLALFCVVVFVICTIRFFTCKQSWFSLFATTIFVMFNI
C2 NTTFLPVDMQGVMLALFCVVVFVICTIRFFTCKQSWFSLFATTIFVMFNI
C3 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTVLVIFNM
C4 NTTFLPVDMQGVMLALFCVAVFVTYTIRFFTCKQSWFSLFATTVFVMFNI
C5 NTTFLPVDMQGVMLHWSVCVLYMHY--KIFTCKQSWFSLFATTIFVMFNI
C6 NTTFLPVDMQGVMLALFCVVVFVTYTIRFFTCKQSWFSLFVTTVFVVFNI
C7 NTTFLPVDMQGVMLALFCVVVFVICTIRFFTCKQSWFSLFATTIFVMFNI
C8 NTTFLPVDMQGVMLALFCVVVFVTYTIRFFTCKQSWFSLFVTTVFVVFNI
C9 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTVLVIFNM
C10 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTVLVIFNM
C11 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNM
C12 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNM
C13 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNM
** *********** ::: ::********** .**::*:**:
C1 VKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAYYIVV
C2 VKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAYYIVV
C3 VKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVVASYRIAYYIVV
C4 VKLLGMIGEPWTDDYILLCLVNMLTMLISLTTKDWFVVFVSYKFAYYIVV
C5 VKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAFYIVV
C6 VKLLGMVGEPWTENHILLCLVNMLTMLISLTTKDWFVVFVSYKFAYYVVV
C7 VKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAYYIVV
C8 VKLLGMVGEPWTEDHILLCLVNMLTMLISLTTKDWFVVFASYKFAYYIVV
C9 FKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWVVVVASYRVAYYIVV
C10 FKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWVVVVASYRVAYYIVV
C11 VKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVIASYRIAYYIVV
C12 VKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVVASYRIAYYIVV
C13 VKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVVASYRIAYYIVV
.*::* .****:: : :*:******::*******.**..**:.*:*:**
C1 YVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C2 YVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C3 CVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C4 YVMQPAFVQDFGFVKCISIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C5 YVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C6 YVMQPSFVYDFGFVKCISIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C7 YVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C8 YVMQPAFVQDFGFVKCVSIIYMACGYIFCCYYGILYWVNRFTCMTCGVYQ
C9 CVMPAAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C10 CVMPAAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C11 CVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C12 CVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C13 CVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
** .:** ****:**:**:******:***********************
C1 FTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ---
C2 FTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ---
C3 FTVSAAELKYMTANNLSAPRNAYDAMILSAKLIGVGGKRNIKISTVQ---
C4 FTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGERNIKISTVQ---
C5 FTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ---
C6 FTVSPAELKYMTANNLSAPKTAYDAMILSVKLMGIGGERNIKISTVQ---
C7 FTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ---
C8 FTVSPAELKYMTANNLSAPKTAYDAMILSVKLMGIGGERNIKISTVQ---
C9 FTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ---
C10 FTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ---
C11 FTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ---
C12 FTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ---
C13 FTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQSKL
****.**************:.******** **:*:** *********
C1 ---
C2 ---
C3 ---
C4 ---
C5 ---
C6 ---
C7 ---
C8 ---
C9 ---
C10 ---
C11 ---
C12 ---
C13 TEM
-- Starting log on Wed Nov 09 22:47:57 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.15 sec, SCORE=996, Nseq=13, Len=303
C1 ---SGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITT
C2 ---SGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITT
C3 ---AGKVTSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTT
C4 ----GKVKSLFYPVMTAIAILFAFWLEFFMYTPFTWINPTFVSIILAITT
C5 ---SGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITT
C6 ---SGKVKSLFYPMMTAVAILFSFWLEFFMYTPFTWINPSFVSVILAITT
C7 NLQSGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITT
C8 ---SGKVKSLFYPVMTAMAILFAFWLEFFMYTPFTWINPTFVSAILAITT
C9 ---AGKVKSFFYPIVTAMTILFAFWLEFFMYTPFTWINPAFVSFVLAVTT
C10 ---AGKVKSFFYPIVTAMTILFAFWLEFFMYTPFTWINPAFVSFVLAVTT
C11 ---AGKVKSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTT
C12 ---AGKVKSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTT
C13 ----------FYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTT
***::**::***:****************:*** :**:**
C1 LVSVLLVAGIKHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENV
C2 LVSVLLVAGIKHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENV
C3 LISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENT
C4 LVSVLLVAGIKHKMLFFMSFVMPSVVLATAHNFVWDMTCYESLQVLVENV
C5 LVSVLLVAGIKHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENV
C6 IFSVLLVAGIKHKMLFFMSFVMPSVVLSTVHNVVWDMTYYESLQVLVENT
C7 LVSVLLVAGIKHKMLFFMSFVMPSVILVTAHNVVWDMTYYESLQVLVENV
C8 LVSVMLVAGIKHKMLFFMSFVMPSVVLATVHNVVWDMTYYESLQVLVENV
C9 LVSTVFVSGIKHKMLFFMSFVLPSVVLVTAHNLFWDFSYYESLQSIVENT
C10 LVSTVFVSGIKHKMLFFMSFVLPSVVLVTAHNLFWDFSYYESLQSIVENT
C11 LISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENT
C12 LISTFFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENT
C13 LISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENT
:.*..:*:*************:***:* *.**..**:: ***** :***.
C1 NTTFLPVDMQGVMLALFCVVVFVICTIRFFTCKQSWFSLFATTIFVMFNI
C2 NTTFLPVDMQGVMLALFCVVVFVICTIRFFTCKQSWFSLFATTIFVMFNI
C3 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTVLVIFNM
C4 NTTFLPVDMQGVMLALFCVAVFVTYTIRFFTCKQSWFSLFATTVFVMFNI
C5 NTTFLPVDMQGVMLHWSVCVLYMHY--KIFTCKQSWFSLFATTIFVMFNI
C6 NTTFLPVDMQGVMLALFCVVVFVTYTIRFFTCKQSWFSLFVTTVFVVFNI
C7 NTTFLPVDMQGVMLALFCVVVFVICTIRFFTCKQSWFSLFATTIFVMFNI
C8 NTTFLPVDMQGVMLALFCVVVFVTYTIRFFTCKQSWFSLFVTTVFVVFNI
C9 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTVLVIFNM
C10 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTVLVIFNM
C11 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNM
C12 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNM
C13 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNM
** *********** ::: ::********** .**::*:**:
C1 VKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAYYIVV
C2 VKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAYYIVV
C3 VKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVVASYRIAYYIVV
C4 VKLLGMIGEPWTDDYILLCLVNMLTMLISLTTKDWFVVFVSYKFAYYIVV
C5 VKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAFYIVV
C6 VKLLGMVGEPWTENHILLCLVNMLTMLISLTTKDWFVVFVSYKFAYYVVV
C7 VKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAYYIVV
C8 VKLLGMVGEPWTEDHILLCLVNMLTMLISLTTKDWFVVFASYKFAYYIVV
C9 FKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWVVVVASYRVAYYIVV
C10 FKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWVVVVASYRVAYYIVV
C11 VKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVIASYRIAYYIVV
C12 VKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVVASYRIAYYIVV
C13 VKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVVASYRIAYYIVV
.*::* .****:: : :*:******::*******.**..**:.*:*:**
C1 YVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C2 YVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C3 CVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C4 YVMQPAFVQDFGFVKCISIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C5 YVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C6 YVMQPSFVYDFGFVKCISIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C7 YVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C8 YVMQPAFVQDFGFVKCVSIIYMACGYIFCCYYGILYWVNRFTCMTCGVYQ
C9 CVMPAAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C10 CVMPAAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C11 CVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C12 CVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C13 CVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
** .:** ****:**:**:******:***********************
C1 FTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ---
C2 FTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ---
C3 FTVSAAELKYMTANNLSAPRNAYDAMILSAKLIGVGGKRNIKISTVQ---
C4 FTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGERNIKISTVQ---
C5 FTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ---
C6 FTVSPAELKYMTANNLSAPKTAYDAMILSVKLMGIGGERNIKISTVQ---
C7 FTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ---
C8 FTVSPAELKYMTANNLSAPKTAYDAMILSVKLMGIGGERNIKISTVQ---
C9 FTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ---
C10 FTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ---
C11 FTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ---
C12 FTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ---
C13 FTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQSKL
****.**************:.******** **:*:** *********
C1 ---
C2 ---
C3 ---
C4 ---
C5 ---
C6 ---
C7 ---
C8 ---
C9 ---
C10 ---
C11 ---
C12 ---
C13 TEM
-- Starting log on Thu Nov 10 05:30:31 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1.result/gapped_alignment/codeml,A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1.result.1--
MrBayes v3.2.6 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/data/mrbayes_input.nex"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 13 taxa and 909 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C1
Taxon 2 -> C10
Taxon 3 -> C11
Taxon 4 -> C12
Taxon 5 -> C13
Taxon 6 -> C2
Taxon 7 -> C3
Taxon 8 -> C4
Taxon 9 -> C5
Taxon 10 -> C6
Taxon 11 -> C7
Taxon 12 -> C8
Taxon 13 -> C9
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1668058232
Setting output file names to "/data/mrbayes_input.nex.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called 'first_pos'
Defining charset called 'second_pos'
Defining charset called 'third_pos'
Defining partition called 'by_codon'
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 1154083210
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 8381123374
Seed = 1932839304
Swapseed = 1668058232
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
The distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Shape parameter is exponentially
distributed with parameter (1.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Active parameters:
Partition(s)
Parameters 1 2 3
---------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
---------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(1.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:GammaDir(1.0,0.1000,1.0,1.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
0.91 % Dirichlet(Revmat{all})
0.91 % Slider(Revmat{all})
0.91 % Dirichlet(Pi{all})
0.91 % Slider(Pi{all})
1.82 % Multiplier(Alpha{1,2})
1.82 % Multiplier(Alpha{3})
1.82 % Slider(Pinvar{all})
9.09 % ExtSPR(Tau{all},V{all})
9.09 % ExtTBR(Tau{all},V{all})
9.09 % NNI(Tau{all},V{all})
9.09 % ParsSPR(Tau{all},V{all})
36.36 % Multiplier(V{all})
12.73 % Nodeslider(V{all})
5.45 % TLMultiplier(V{all})
Division 1 has 68 unique site patterns
Division 2 has 43 unique site patterns
Division 3 has 144 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -6635.325145 -- 44.441226
Chain 2 -- -6790.888429 -- 44.441226
Chain 3 -- -7046.463417 -- 44.441226
Chain 4 -- -7149.967959 -- 44.441226
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -6671.936954 -- 44.441226
Chain 2 -- -7138.328439 -- 44.441226
Chain 3 -- -6764.316491 -- 44.441226
Chain 4 -- -7152.572745 -- 44.441226
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-6635.325] (-6790.888) (-7046.463) (-7149.968) * [-6671.937] (-7138.328) (-6764.316) (-7152.573)
1000 -- (-3291.205) (-3353.609) [-3277.252] (-3361.130) * [-3323.389] (-3339.699) (-3329.136) (-3313.715) -- 0:16:39
2000 -- [-3243.763] (-3298.880) (-3241.548) (-3285.944) * (-3279.396) [-3269.213] (-3278.376) (-3281.194) -- 0:16:38
3000 -- (-3232.215) (-3252.347) [-3238.775] (-3259.677) * [-3251.765] (-3265.311) (-3250.270) (-3259.675) -- 0:16:37
4000 -- (-3214.896) (-3251.994) (-3225.348) [-3225.159] * (-3219.029) (-3234.984) [-3220.058] (-3229.251) -- 0:16:36
5000 -- (-3222.348) (-3243.030) (-3223.579) [-3220.323] * (-3218.602) (-3218.809) (-3229.687) [-3221.220] -- 0:16:35
Average standard deviation of split frequencies: 0.104757
6000 -- (-3207.358) (-3229.757) (-3219.347) [-3211.765] * (-3208.697) (-3218.147) (-3224.795) [-3209.495] -- 0:16:34
7000 -- [-3224.329] (-3217.956) (-3211.844) (-3221.968) * [-3210.468] (-3217.550) (-3207.141) (-3219.960) -- 0:16:33
8000 -- (-3237.131) [-3209.908] (-3222.136) (-3212.754) * (-3207.698) (-3206.111) (-3220.468) [-3209.434] -- 0:16:32
9000 -- (-3214.583) (-3219.958) (-3218.755) [-3203.862] * (-3217.462) [-3218.119] (-3205.415) (-3205.264) -- 0:16:31
10000 -- (-3213.377) (-3209.562) [-3213.456] (-3216.055) * (-3208.302) (-3214.813) (-3215.130) [-3215.923] -- 0:16:30
Average standard deviation of split frequencies: 0.061030
11000 -- (-3209.426) (-3210.756) [-3210.997] (-3213.370) * (-3214.535) (-3210.526) (-3211.196) [-3215.530] -- 0:16:29
12000 -- (-3216.687) [-3217.693] (-3217.754) (-3216.788) * (-3219.468) [-3215.189] (-3215.666) (-3210.511) -- 0:15:05
13000 -- (-3218.939) (-3221.728) (-3217.728) [-3221.554] * (-3215.991) [-3205.823] (-3209.776) (-3219.197) -- 0:15:11
14000 -- [-3217.417] (-3208.581) (-3222.127) (-3227.435) * (-3212.685) (-3212.296) (-3210.166) [-3205.404] -- 0:15:15
15000 -- [-3210.980] (-3220.385) (-3220.949) (-3219.904) * (-3223.450) [-3210.017] (-3218.106) (-3221.502) -- 0:15:19
Average standard deviation of split frequencies: 0.058926
16000 -- (-3226.752) [-3216.378] (-3221.742) (-3216.318) * (-3216.579) (-3207.701) (-3223.461) [-3210.603] -- 0:15:22
17000 -- (-3226.293) (-3208.686) (-3226.703) [-3215.348] * (-3222.761) (-3220.740) (-3217.742) [-3219.021] -- 0:15:25
18000 -- (-3224.038) [-3220.687] (-3218.730) (-3222.446) * (-3208.628) (-3212.014) (-3221.662) [-3213.592] -- 0:15:27
19000 -- (-3221.477) [-3223.509] (-3215.183) (-3237.916) * (-3221.343) (-3227.462) [-3216.919] (-3211.038) -- 0:15:29
20000 -- (-3222.695) (-3215.325) [-3207.202] (-3211.442) * (-3214.316) [-3213.458] (-3227.072) (-3215.109) -- 0:15:31
Average standard deviation of split frequencies: 0.051051
21000 -- [-3208.838] (-3223.663) (-3213.023) (-3214.618) * [-3217.554] (-3233.264) (-3214.429) (-3212.613) -- 0:15:32
22000 -- (-3215.851) (-3220.701) [-3215.216] (-3212.770) * (-3218.632) (-3212.871) (-3209.955) [-3206.315] -- 0:15:33
23000 -- [-3218.380] (-3210.191) (-3229.906) (-3216.445) * (-3217.216) (-3217.787) (-3226.641) [-3223.920] -- 0:15:34
24000 -- [-3218.698] (-3213.210) (-3212.401) (-3222.257) * [-3208.051] (-3225.154) (-3210.558) (-3217.094) -- 0:15:35
25000 -- [-3223.011] (-3218.024) (-3222.899) (-3223.881) * (-3222.903) (-3217.177) (-3213.668) [-3215.995] -- 0:14:57
Average standard deviation of split frequencies: 0.037086
26000 -- (-3214.757) (-3216.054) (-3210.877) [-3229.967] * [-3212.186] (-3212.441) (-3213.862) (-3224.336) -- 0:14:59
27000 -- (-3215.357) (-3211.566) (-3209.204) [-3215.159] * [-3219.212] (-3209.220) (-3230.749) (-3217.982) -- 0:15:00
28000 -- [-3209.626] (-3228.282) (-3221.155) (-3222.356) * (-3214.679) (-3221.450) [-3216.554] (-3205.817) -- 0:15:02
29000 -- [-3208.874] (-3211.691) (-3208.377) (-3221.058) * (-3213.820) (-3221.987) [-3226.198] (-3202.244) -- 0:15:04
30000 -- (-3221.010) [-3205.482] (-3210.727) (-3231.962) * (-3213.666) (-3213.308) (-3219.350) [-3210.088] -- 0:15:05
Average standard deviation of split frequencies: 0.034936
31000 -- (-3216.986) (-3229.831) [-3213.716] (-3223.164) * (-3213.143) [-3218.160] (-3214.592) (-3227.968) -- 0:15:06
32000 -- (-3214.276) (-3220.164) [-3213.379] (-3234.851) * (-3224.491) [-3216.493] (-3216.753) (-3212.013) -- 0:15:07
33000 -- (-3219.225) (-3218.883) (-3213.618) [-3208.679] * (-3224.692) [-3214.478] (-3224.262) (-3215.787) -- 0:15:08
34000 -- (-3221.278) (-3219.927) [-3218.793] (-3220.420) * (-3211.226) (-3218.387) (-3213.348) [-3216.650] -- 0:15:09
35000 -- (-3225.087) (-3218.920) (-3212.962) [-3220.371] * [-3210.665] (-3216.730) (-3217.495) (-3216.557) -- 0:15:09
Average standard deviation of split frequencies: 0.030951
36000 -- [-3209.174] (-3220.714) (-3215.602) (-3222.088) * (-3225.777) [-3210.418] (-3226.471) (-3210.414) -- 0:15:10
37000 -- [-3210.424] (-3220.211) (-3206.593) (-3217.947) * [-3217.621] (-3209.907) (-3211.863) (-3212.501) -- 0:15:10
38000 -- (-3215.681) (-3220.546) (-3229.762) [-3208.091] * (-3212.127) [-3211.224] (-3220.964) (-3226.084) -- 0:14:46
39000 -- [-3215.216] (-3214.196) (-3213.401) (-3221.188) * (-3220.208) [-3216.900] (-3212.740) (-3212.516) -- 0:14:47
40000 -- [-3217.300] (-3217.039) (-3204.318) (-3213.229) * (-3226.897) (-3216.872) [-3212.620] (-3203.877) -- 0:14:48
Average standard deviation of split frequencies: 0.031087
41000 -- (-3220.186) (-3210.958) (-3218.130) [-3207.346] * (-3220.183) (-3224.847) [-3209.239] (-3213.116) -- 0:14:48
42000 -- [-3219.958] (-3218.473) (-3217.568) (-3218.356) * (-3214.189) (-3225.220) (-3217.049) [-3209.800] -- 0:14:49
43000 -- (-3224.019) (-3226.712) (-3211.747) [-3217.714] * (-3209.775) (-3221.240) [-3212.746] (-3220.710) -- 0:14:50
44000 -- [-3217.332] (-3231.921) (-3222.547) (-3212.679) * [-3215.663] (-3212.665) (-3215.684) (-3209.603) -- 0:14:50
45000 -- [-3220.251] (-3212.692) (-3212.737) (-3215.307) * (-3220.466) (-3223.451) [-3216.620] (-3209.455) -- 0:14:51
Average standard deviation of split frequencies: 0.034936
46000 -- [-3212.318] (-3214.755) (-3231.628) (-3215.013) * (-3227.924) (-3211.964) (-3212.130) [-3217.062] -- 0:14:51
47000 -- (-3210.510) (-3223.511) [-3209.697] (-3221.528) * (-3216.410) [-3222.045] (-3220.784) (-3225.961) -- 0:14:52
48000 -- (-3212.969) [-3212.580] (-3209.725) (-3232.356) * (-3227.694) [-3213.569] (-3212.208) (-3220.106) -- 0:14:52
49000 -- [-3208.353] (-3215.565) (-3217.719) (-3232.134) * (-3211.793) (-3221.246) (-3216.934) [-3213.348] -- 0:14:52
50000 -- (-3214.679) (-3218.312) (-3210.153) [-3211.939] * [-3215.032] (-3219.093) (-3218.284) (-3218.519) -- 0:14:53
Average standard deviation of split frequencies: 0.037216
51000 -- [-3211.539] (-3216.972) (-3215.778) (-3212.555) * (-3221.825) [-3216.906] (-3216.824) (-3214.344) -- 0:14:53
52000 -- (-3221.425) (-3231.520) (-3215.357) [-3220.517] * (-3233.038) [-3220.883] (-3213.317) (-3216.170) -- 0:14:35
53000 -- (-3226.112) (-3222.852) [-3223.225] (-3217.804) * (-3217.584) (-3211.290) (-3215.758) [-3220.706] -- 0:14:35
54000 -- (-3224.016) [-3209.326] (-3225.122) (-3214.327) * (-3222.432) (-3212.343) (-3222.837) [-3206.387] -- 0:14:35
55000 -- [-3218.451] (-3220.567) (-3227.909) (-3215.567) * (-3217.085) (-3221.269) [-3211.623] (-3221.699) -- 0:14:36
Average standard deviation of split frequencies: 0.035585
56000 -- (-3215.002) (-3217.829) [-3214.063] (-3221.060) * (-3215.091) [-3212.836] (-3224.230) (-3218.218) -- 0:14:36
57000 -- (-3228.169) (-3216.422) (-3224.276) [-3215.948] * [-3210.486] (-3207.954) (-3217.770) (-3214.622) -- 0:14:36
58000 -- (-3214.998) [-3212.573] (-3218.823) (-3221.503) * [-3206.456] (-3211.695) (-3219.611) (-3213.353) -- 0:14:37
59000 -- [-3210.067] (-3210.182) (-3219.402) (-3209.771) * (-3222.522) (-3222.847) [-3208.881] (-3220.621) -- 0:14:37
60000 -- [-3224.548] (-3232.522) (-3215.815) (-3213.863) * (-3230.228) (-3221.994) (-3222.139) [-3217.853] -- 0:14:37
Average standard deviation of split frequencies: 0.035673
61000 -- [-3216.732] (-3209.990) (-3218.499) (-3216.764) * [-3208.708] (-3230.340) (-3217.553) (-3210.675) -- 0:14:37
62000 -- (-3216.359) (-3213.747) [-3213.710] (-3218.606) * [-3207.718] (-3222.836) (-3217.137) (-3211.075) -- 0:14:37
63000 -- (-3216.771) (-3221.355) (-3213.411) [-3208.588] * (-3223.899) (-3216.933) (-3218.794) [-3211.487] -- 0:14:37
64000 -- (-3212.615) (-3220.496) [-3209.193] (-3214.329) * (-3212.057) (-3222.590) (-3219.215) [-3214.672] -- 0:14:37
65000 -- (-3223.628) (-3228.100) (-3209.973) [-3219.537] * (-3210.491) (-3222.227) [-3218.509] (-3209.975) -- 0:14:23
Average standard deviation of split frequencies: 0.033765
66000 -- (-3232.049) [-3206.453] (-3211.499) (-3206.370) * (-3211.636) [-3215.858] (-3241.235) (-3215.564) -- 0:14:23
67000 -- (-3218.476) (-3216.489) [-3217.217] (-3214.162) * [-3210.987] (-3216.971) (-3230.540) (-3215.043) -- 0:14:23
68000 -- [-3212.690] (-3225.898) (-3215.426) (-3221.429) * [-3210.616] (-3212.655) (-3219.616) (-3219.352) -- 0:14:23
69000 -- (-3213.809) [-3205.315] (-3214.700) (-3217.332) * [-3209.389] (-3209.474) (-3221.495) (-3214.467) -- 0:14:23
70000 -- (-3207.096) (-3212.883) (-3213.923) [-3209.647] * [-3210.486] (-3224.972) (-3217.561) (-3220.055) -- 0:14:23
Average standard deviation of split frequencies: 0.031535
71000 -- [-3208.449] (-3213.460) (-3213.314) (-3220.259) * (-3224.504) (-3220.435) (-3217.701) [-3213.128] -- 0:14:23
72000 -- (-3213.733) [-3217.609] (-3216.068) (-3217.192) * (-3220.810) (-3223.143) (-3215.114) [-3210.466] -- 0:14:23
73000 -- (-3212.819) [-3220.767] (-3215.455) (-3219.082) * (-3223.628) (-3219.720) [-3222.237] (-3206.990) -- 0:14:23
74000 -- [-3214.034] (-3219.599) (-3214.244) (-3224.883) * [-3218.994] (-3224.748) (-3216.506) (-3216.310) -- 0:14:23
75000 -- (-3220.306) (-3220.356) [-3214.933] (-3216.396) * (-3213.297) (-3215.872) (-3220.324) [-3211.861] -- 0:14:23
Average standard deviation of split frequencies: 0.023965
76000 -- (-3217.009) (-3230.605) [-3206.352] (-3217.547) * (-3212.499) (-3216.584) [-3208.198] (-3223.506) -- 0:14:23
77000 -- [-3208.718] (-3216.943) (-3207.069) (-3217.957) * (-3214.422) (-3214.681) (-3209.623) [-3212.297] -- 0:14:23
78000 -- (-3217.334) (-3220.112) [-3226.239] (-3222.503) * (-3209.918) (-3217.889) [-3211.334] (-3212.267) -- 0:14:11
79000 -- (-3216.630) (-3212.524) [-3218.694] (-3211.478) * [-3211.741] (-3217.052) (-3210.325) (-3219.327) -- 0:14:11
80000 -- (-3219.804) (-3222.735) [-3221.866] (-3219.528) * (-3210.600) [-3207.518] (-3213.778) (-3216.630) -- 0:14:11
Average standard deviation of split frequencies: 0.019125
81000 -- [-3207.853] (-3221.235) (-3222.719) (-3213.312) * (-3204.798) [-3210.671] (-3220.657) (-3213.614) -- 0:14:10
82000 -- [-3218.662] (-3218.761) (-3218.739) (-3227.714) * (-3215.580) (-3211.186) (-3210.039) [-3207.971] -- 0:14:10
83000 -- (-3216.903) [-3210.027] (-3219.985) (-3222.532) * [-3211.370] (-3217.121) (-3211.029) (-3210.925) -- 0:14:10
84000 -- (-3214.827) (-3224.571) [-3211.557] (-3222.360) * [-3214.256] (-3218.404) (-3211.125) (-3224.460) -- 0:14:10
85000 -- (-3220.942) (-3210.149) (-3213.393) [-3219.284] * (-3210.597) (-3215.239) [-3209.250] (-3225.936) -- 0:14:10
Average standard deviation of split frequencies: 0.020680
86000 -- (-3225.128) (-3219.602) (-3217.170) [-3218.145] * (-3225.816) (-3215.891) (-3212.250) [-3217.873] -- 0:14:10
87000 -- (-3217.183) [-3219.179] (-3210.896) (-3228.196) * [-3216.961] (-3212.780) (-3218.566) (-3218.419) -- 0:14:10
88000 -- (-3199.130) [-3219.163] (-3216.159) (-3216.330) * (-3220.383) [-3210.858] (-3206.071) (-3237.749) -- 0:14:09
89000 -- (-3218.603) [-3214.221] (-3227.816) (-3212.103) * [-3211.400] (-3212.239) (-3223.300) (-3229.668) -- 0:14:09
90000 -- (-3217.296) (-3218.058) (-3208.011) [-3213.746] * [-3214.857] (-3217.779) (-3214.787) (-3227.502) -- 0:13:59
Average standard deviation of split frequencies: 0.021506
91000 -- [-3213.707] (-3217.800) (-3218.892) (-3218.374) * (-3226.453) (-3210.101) [-3218.449] (-3214.964) -- 0:13:59
92000 -- (-3208.349) [-3222.050] (-3216.532) (-3225.451) * (-3223.725) (-3216.714) (-3218.090) [-3206.835] -- 0:13:58
93000 -- (-3215.919) (-3225.143) [-3210.680] (-3223.683) * (-3218.783) [-3211.590] (-3212.231) (-3217.929) -- 0:13:58
94000 -- (-3225.133) (-3209.137) (-3208.582) [-3212.783] * (-3213.210) (-3212.005) [-3213.631] (-3222.430) -- 0:13:58
95000 -- [-3219.601] (-3211.017) (-3226.842) (-3217.292) * (-3222.680) (-3208.914) [-3211.171] (-3225.264) -- 0:13:58
Average standard deviation of split frequencies: 0.022767
96000 -- (-3214.608) [-3213.177] (-3216.738) (-3229.519) * (-3221.989) (-3212.404) [-3208.601] (-3220.304) -- 0:13:58
97000 -- (-3217.198) (-3221.519) [-3215.112] (-3216.347) * (-3219.568) (-3221.893) [-3212.129] (-3216.008) -- 0:13:57
98000 -- (-3223.488) [-3213.380] (-3222.805) (-3217.460) * [-3225.471] (-3220.396) (-3220.098) (-3219.217) -- 0:13:57
99000 -- (-3227.660) (-3214.123) (-3226.870) [-3216.579] * (-3225.734) [-3218.668] (-3217.684) (-3212.239) -- 0:13:57
100000 -- (-3215.568) (-3215.462) (-3225.038) [-3210.168] * (-3213.456) (-3217.563) [-3222.832] (-3218.012) -- 0:13:57
Average standard deviation of split frequencies: 0.022563
101000 -- (-3218.845) [-3200.931] (-3221.651) (-3226.318) * [-3216.471] (-3216.153) (-3213.610) (-3206.336) -- 0:13:56
102000 -- (-3212.733) [-3220.919] (-3217.222) (-3222.617) * (-3230.942) [-3220.115] (-3212.315) (-3220.282) -- 0:13:56
103000 -- [-3215.729] (-3218.385) (-3220.002) (-3209.930) * (-3213.438) (-3217.224) (-3224.796) [-3204.330] -- 0:13:47
104000 -- (-3217.682) (-3218.556) (-3212.391) [-3217.206] * (-3211.391) (-3226.460) (-3224.676) [-3209.861] -- 0:13:47
105000 -- (-3220.902) (-3220.203) (-3220.469) [-3220.575] * [-3216.348] (-3205.956) (-3224.000) (-3212.977) -- 0:13:46
Average standard deviation of split frequencies: 0.022034
106000 -- [-3210.376] (-3215.475) (-3222.109) (-3228.877) * [-3234.921] (-3214.395) (-3221.527) (-3214.930) -- 0:13:46
107000 -- (-3226.829) (-3225.646) (-3223.077) [-3217.601] * (-3211.353) (-3215.540) (-3219.550) [-3221.650] -- 0:13:46
108000 -- (-3213.421) (-3219.329) (-3210.874) [-3211.688] * (-3217.019) (-3218.663) [-3212.658] (-3223.169) -- 0:13:45
109000 -- (-3217.808) (-3212.166) (-3208.818) [-3222.123] * (-3214.971) [-3213.931] (-3212.896) (-3216.193) -- 0:13:45
110000 -- (-3223.073) [-3216.768] (-3208.146) (-3218.154) * (-3216.652) (-3226.409) [-3214.390] (-3223.463) -- 0:13:45
Average standard deviation of split frequencies: 0.023815
111000 -- (-3218.515) (-3218.715) [-3216.241] (-3209.702) * (-3211.147) (-3211.712) (-3223.130) [-3219.220] -- 0:13:44
112000 -- [-3215.587] (-3221.717) (-3213.842) (-3212.940) * (-3212.723) (-3214.525) [-3220.456] (-3241.477) -- 0:13:44
113000 -- (-3211.849) (-3210.269) [-3212.344] (-3218.018) * (-3217.660) (-3209.718) (-3217.474) [-3221.168] -- 0:13:44
114000 -- [-3210.792] (-3213.770) (-3209.574) (-3214.745) * (-3227.368) (-3225.056) [-3218.053] (-3215.411) -- 0:13:43
115000 -- (-3218.336) (-3214.733) [-3210.787] (-3216.757) * (-3207.231) [-3212.378] (-3210.515) (-3214.124) -- 0:13:43
Average standard deviation of split frequencies: 0.024937
116000 -- (-3223.226) (-3209.869) (-3215.829) [-3209.768] * [-3206.852] (-3211.394) (-3206.589) (-3217.466) -- 0:13:43
117000 -- (-3223.293) (-3207.248) (-3207.678) [-3207.244] * (-3219.372) [-3212.561] (-3217.848) (-3222.418) -- 0:13:35
118000 -- (-3224.334) (-3214.801) (-3222.295) [-3210.269] * [-3211.348] (-3210.532) (-3228.353) (-3219.243) -- 0:13:34
119000 -- (-3229.684) (-3218.946) (-3215.523) [-3219.381] * [-3210.847] (-3216.078) (-3229.163) (-3220.773) -- 0:13:34
120000 -- [-3215.440] (-3215.062) (-3218.876) (-3222.521) * (-3220.267) (-3220.268) (-3222.505) [-3224.640] -- 0:13:34
Average standard deviation of split frequencies: 0.023973
121000 -- (-3221.788) (-3213.491) [-3213.013] (-3217.901) * [-3219.801] (-3219.900) (-3208.770) (-3223.254) -- 0:13:33
122000 -- (-3213.487) [-3218.512] (-3218.512) (-3209.832) * (-3219.267) (-3216.183) (-3210.980) [-3214.531] -- 0:13:33
123000 -- (-3225.989) [-3219.787] (-3216.466) (-3213.742) * (-3217.981) [-3203.733] (-3218.049) (-3224.172) -- 0:13:32
124000 -- [-3218.533] (-3227.846) (-3209.477) (-3214.649) * (-3205.616) (-3211.980) [-3220.122] (-3213.443) -- 0:13:32
125000 -- (-3217.214) (-3213.847) [-3209.369] (-3210.426) * (-3212.563) (-3213.682) (-3215.424) [-3210.693] -- 0:13:32
Average standard deviation of split frequencies: 0.026529
126000 -- (-3228.559) (-3214.115) (-3221.041) [-3214.316] * (-3226.526) [-3209.808] (-3217.720) (-3225.274) -- 0:13:31
127000 -- (-3221.978) (-3215.788) [-3213.902] (-3209.244) * [-3209.888] (-3222.281) (-3215.334) (-3216.324) -- 0:13:31
128000 -- (-3215.295) (-3217.668) (-3220.205) [-3212.402] * (-3215.169) [-3212.833] (-3219.803) (-3220.885) -- 0:13:30
129000 -- (-3206.285) (-3221.832) (-3223.949) [-3210.766] * (-3214.810) (-3210.596) [-3220.429] (-3208.767) -- 0:13:30
130000 -- (-3212.502) (-3210.122) [-3211.057] (-3228.931) * (-3205.739) (-3209.581) (-3231.171) [-3225.416] -- 0:13:29
Average standard deviation of split frequencies: 0.024762
131000 -- (-3203.612) [-3218.828] (-3221.192) (-3221.185) * (-3216.931) (-3210.986) [-3213.733] (-3214.007) -- 0:13:22
132000 -- (-3216.040) (-3220.942) [-3210.065] (-3210.894) * (-3226.869) [-3210.372] (-3219.774) (-3222.503) -- 0:13:22
133000 -- [-3212.358] (-3217.658) (-3218.787) (-3239.376) * (-3215.467) [-3219.866] (-3218.387) (-3216.345) -- 0:13:21
134000 -- (-3212.785) [-3220.443] (-3219.740) (-3220.526) * (-3218.433) (-3217.029) (-3212.022) [-3209.946] -- 0:13:21
135000 -- (-3213.291) [-3209.903] (-3224.060) (-3219.860) * (-3221.722) (-3227.406) [-3217.196] (-3208.077) -- 0:13:20
Average standard deviation of split frequencies: 0.026312
136000 -- (-3209.292) [-3208.018] (-3221.169) (-3215.003) * (-3210.500) (-3215.082) [-3219.582] (-3214.812) -- 0:13:20
137000 -- [-3213.287] (-3217.413) (-3212.797) (-3223.394) * (-3217.562) (-3212.657) (-3210.602) [-3204.547] -- 0:13:20
138000 -- (-3218.627) [-3228.558] (-3221.344) (-3220.262) * (-3215.719) (-3206.239) (-3215.051) [-3208.477] -- 0:13:19
139000 -- [-3209.235] (-3221.302) (-3225.016) (-3221.476) * [-3214.180] (-3214.619) (-3220.781) (-3218.228) -- 0:13:19
140000 -- (-3209.407) (-3216.840) [-3212.143] (-3218.495) * [-3219.235] (-3212.387) (-3218.753) (-3220.958) -- 0:13:18
Average standard deviation of split frequencies: 0.023611
141000 -- [-3217.420] (-3215.735) (-3225.993) (-3207.660) * (-3212.890) [-3211.548] (-3227.739) (-3209.259) -- 0:13:18
142000 -- [-3216.993] (-3219.854) (-3233.294) (-3220.440) * (-3215.856) [-3214.284] (-3221.268) (-3227.427) -- 0:13:17
143000 -- (-3225.364) (-3221.446) [-3219.089] (-3212.537) * (-3216.083) [-3213.188] (-3226.988) (-3212.363) -- 0:13:17
144000 -- (-3210.547) (-3226.677) [-3218.773] (-3213.733) * (-3216.148) (-3213.258) (-3224.430) [-3214.185] -- 0:13:16
145000 -- (-3211.167) [-3218.100] (-3217.120) (-3224.889) * [-3219.120] (-3216.014) (-3219.735) (-3214.714) -- 0:13:16
Average standard deviation of split frequencies: 0.022748
146000 -- (-3216.860) (-3226.435) [-3222.546] (-3217.611) * (-3222.176) (-3216.891) (-3220.758) [-3208.394] -- 0:13:09
147000 -- [-3222.236] (-3219.932) (-3224.808) (-3221.554) * (-3217.251) [-3222.607] (-3210.951) (-3218.544) -- 0:13:09
148000 -- [-3208.637] (-3216.072) (-3221.207) (-3210.731) * (-3214.827) (-3226.235) (-3210.331) [-3213.609] -- 0:13:08
149000 -- [-3213.753] (-3217.989) (-3221.912) (-3229.110) * [-3222.778] (-3229.840) (-3220.560) (-3206.307) -- 0:13:08
150000 -- [-3210.456] (-3222.013) (-3218.034) (-3218.207) * (-3214.778) [-3213.460] (-3221.010) (-3211.896) -- 0:13:07
Average standard deviation of split frequencies: 0.021190
151000 -- (-3222.665) (-3215.030) (-3209.170) [-3208.952] * (-3213.453) (-3220.843) [-3215.081] (-3216.212) -- 0:13:07
152000 -- (-3219.314) [-3217.695] (-3215.375) (-3209.935) * (-3222.849) (-3215.352) (-3228.263) [-3213.545] -- 0:13:06
153000 -- (-3223.975) [-3215.459] (-3216.818) (-3216.191) * (-3232.259) [-3211.054] (-3213.434) (-3229.228) -- 0:13:06
154000 -- [-3216.014] (-3223.407) (-3226.766) (-3214.317) * (-3218.511) [-3206.365] (-3229.938) (-3232.997) -- 0:13:05
155000 -- [-3226.492] (-3214.102) (-3224.731) (-3227.316) * (-3217.509) (-3211.008) [-3214.565] (-3220.138) -- 0:13:05
Average standard deviation of split frequencies: 0.019917
156000 -- (-3221.874) (-3213.120) [-3210.404] (-3214.831) * (-3216.356) [-3212.223] (-3225.222) (-3226.469) -- 0:13:04
157000 -- (-3226.127) (-3211.036) (-3211.532) [-3210.137] * (-3220.945) [-3214.405] (-3224.290) (-3222.354) -- 0:13:03
158000 -- (-3218.826) [-3210.718] (-3219.912) (-3221.211) * (-3208.872) (-3215.289) [-3211.063] (-3230.364) -- 0:13:03
159000 -- [-3218.337] (-3225.109) (-3218.395) (-3221.207) * (-3215.258) [-3216.511] (-3216.874) (-3221.254) -- 0:12:57
160000 -- (-3221.573) (-3224.827) [-3211.373] (-3222.815) * (-3213.181) [-3224.401] (-3221.564) (-3215.839) -- 0:12:57
Average standard deviation of split frequencies: 0.017604
161000 -- [-3210.616] (-3223.862) (-3218.432) (-3211.977) * (-3216.836) (-3220.844) (-3221.714) [-3213.318] -- 0:12:56
162000 -- [-3217.337] (-3224.008) (-3240.850) (-3222.201) * (-3218.890) (-3210.235) [-3213.745] (-3221.914) -- 0:12:55
163000 -- (-3220.773) [-3215.912] (-3217.488) (-3219.955) * (-3213.083) (-3222.722) [-3210.828] (-3220.950) -- 0:12:55
164000 -- (-3221.202) (-3221.616) [-3213.343] (-3223.040) * (-3206.733) [-3223.255] (-3218.599) (-3214.531) -- 0:12:54
165000 -- [-3211.360] (-3213.923) (-3219.950) (-3214.126) * (-3222.292) (-3221.409) [-3204.021] (-3214.691) -- 0:12:54
Average standard deviation of split frequencies: 0.017813
166000 -- (-3228.144) (-3218.700) (-3214.110) [-3213.044] * (-3217.241) [-3216.095] (-3213.324) (-3217.677) -- 0:12:53
167000 -- (-3227.879) (-3213.419) (-3219.227) [-3215.677] * [-3209.481] (-3213.932) (-3212.466) (-3218.284) -- 0:12:53
168000 -- (-3216.443) (-3225.712) (-3220.879) [-3213.044] * (-3217.352) (-3211.368) [-3213.773] (-3214.998) -- 0:12:52
169000 -- (-3220.480) (-3231.036) [-3214.833] (-3217.069) * (-3219.328) (-3213.796) [-3206.296] (-3209.581) -- 0:12:51
170000 -- (-3219.009) [-3210.133] (-3223.100) (-3210.418) * (-3213.001) (-3221.292) [-3217.003] (-3210.302) -- 0:12:51
Average standard deviation of split frequencies: 0.019209
171000 -- (-3222.804) [-3215.262] (-3217.702) (-3210.885) * (-3226.433) (-3221.454) (-3220.454) [-3211.645] -- 0:12:45
172000 -- (-3238.013) (-3230.096) (-3216.999) [-3213.411] * (-3226.888) (-3213.443) (-3206.044) [-3209.356] -- 0:12:45
173000 -- (-3221.413) (-3216.248) (-3213.225) [-3217.513] * (-3223.083) (-3223.327) [-3207.431] (-3224.802) -- 0:12:44
174000 -- (-3214.322) [-3203.048] (-3217.872) (-3216.929) * (-3222.757) (-3215.186) [-3209.189] (-3211.711) -- 0:12:44
175000 -- (-3237.019) (-3213.540) (-3216.733) [-3206.865] * (-3205.462) (-3217.386) (-3212.415) [-3213.055] -- 0:12:43
Average standard deviation of split frequencies: 0.020697
176000 -- (-3208.915) [-3205.351] (-3223.195) (-3225.215) * [-3210.261] (-3211.433) (-3233.820) (-3213.347) -- 0:12:43
177000 -- [-3208.080] (-3210.529) (-3213.697) (-3216.559) * (-3221.922) (-3208.871) [-3227.566] (-3214.625) -- 0:12:42
178000 -- [-3209.636] (-3214.355) (-3212.397) (-3213.788) * (-3210.994) (-3221.489) [-3211.950] (-3217.763) -- 0:12:41
179000 -- [-3209.840] (-3219.650) (-3204.901) (-3210.920) * (-3215.651) [-3208.795] (-3214.045) (-3215.335) -- 0:12:41
180000 -- (-3216.020) (-3216.810) (-3221.026) [-3212.798] * (-3208.496) (-3216.078) [-3211.503] (-3219.138) -- 0:12:40
Average standard deviation of split frequencies: 0.021348
181000 -- (-3213.641) (-3212.295) [-3216.220] (-3217.142) * (-3215.035) (-3216.179) (-3212.271) [-3216.131] -- 0:12:40
182000 -- (-3219.248) (-3217.370) (-3218.700) [-3218.697] * (-3221.234) (-3213.671) [-3207.954] (-3229.608) -- 0:12:39
183000 -- [-3211.906] (-3221.695) (-3221.699) (-3219.011) * (-3219.592) (-3213.975) [-3206.050] (-3220.931) -- 0:12:34
184000 -- (-3223.709) (-3227.456) (-3212.228) [-3217.117] * (-3222.002) (-3212.609) [-3215.696] (-3215.793) -- 0:12:33
185000 -- (-3220.370) (-3212.840) (-3220.707) [-3220.385] * (-3228.658) [-3213.493] (-3209.552) (-3223.622) -- 0:12:33
Average standard deviation of split frequencies: 0.021197
186000 -- [-3214.311] (-3223.042) (-3213.776) (-3213.322) * [-3214.270] (-3219.628) (-3219.503) (-3221.626) -- 0:12:32
187000 -- (-3211.221) (-3221.747) [-3206.709] (-3215.682) * (-3220.162) (-3226.191) [-3209.417] (-3222.958) -- 0:12:32
188000 -- (-3217.882) (-3220.151) [-3206.116] (-3215.161) * (-3216.668) (-3243.520) (-3218.905) [-3217.325] -- 0:12:31
189000 -- (-3224.782) (-3218.422) [-3210.733] (-3219.639) * (-3216.101) (-3232.576) [-3208.059] (-3219.979) -- 0:12:30
190000 -- (-3219.332) (-3228.595) [-3211.652] (-3215.568) * (-3222.281) (-3232.898) [-3215.582] (-3220.031) -- 0:12:30
Average standard deviation of split frequencies: 0.020004
191000 -- [-3211.149] (-3211.061) (-3216.097) (-3219.848) * (-3211.504) (-3219.325) [-3211.368] (-3215.774) -- 0:12:29
192000 -- (-3216.892) (-3217.542) [-3204.697] (-3213.927) * (-3215.035) (-3219.221) [-3217.657] (-3225.059) -- 0:12:29
193000 -- (-3218.448) [-3220.674] (-3211.766) (-3228.775) * (-3219.294) (-3211.288) (-3218.617) [-3221.020] -- 0:12:28
194000 -- (-3214.204) (-3225.590) [-3212.083] (-3222.042) * (-3212.425) (-3207.486) (-3214.926) [-3206.146] -- 0:12:27
195000 -- [-3212.781] (-3210.403) (-3218.814) (-3217.240) * (-3213.094) (-3213.501) [-3210.015] (-3225.819) -- 0:12:27
Average standard deviation of split frequencies: 0.018804
196000 -- (-3221.239) [-3213.948] (-3217.612) (-3224.449) * [-3220.809] (-3226.452) (-3212.212) (-3220.597) -- 0:12:22
197000 -- (-3216.921) (-3216.630) (-3220.299) [-3206.624] * (-3211.791) (-3215.362) (-3216.760) [-3207.769] -- 0:12:21
198000 -- (-3207.573) [-3223.121] (-3220.314) (-3213.201) * [-3206.586] (-3229.777) (-3225.134) (-3222.134) -- 0:12:21
199000 -- (-3216.597) (-3227.051) (-3211.219) [-3225.068] * (-3218.130) [-3215.915] (-3218.503) (-3224.961) -- 0:12:20
200000 -- (-3217.609) [-3217.659] (-3207.499) (-3219.580) * (-3208.954) (-3218.034) (-3212.174) [-3219.343] -- 0:12:20
Average standard deviation of split frequencies: 0.018794
201000 -- (-3220.578) [-3220.352] (-3215.159) (-3208.291) * (-3221.210) (-3217.584) (-3220.119) [-3216.276] -- 0:12:19
202000 -- (-3231.906) (-3224.430) (-3237.070) [-3212.364] * (-3213.313) (-3221.735) [-3208.728] (-3209.935) -- 0:12:18
203000 -- (-3222.001) [-3212.343] (-3212.327) (-3216.849) * (-3215.911) (-3212.947) (-3219.159) [-3206.759] -- 0:12:18
204000 -- (-3214.122) (-3220.363) [-3212.284] (-3213.742) * [-3216.862] (-3223.979) (-3216.905) (-3219.544) -- 0:12:17
205000 -- (-3210.881) (-3215.252) [-3212.862] (-3209.615) * (-3217.974) (-3219.376) (-3217.073) [-3212.653] -- 0:12:16
Average standard deviation of split frequencies: 0.017891
206000 -- [-3220.096] (-3219.692) (-3218.169) (-3203.112) * (-3206.842) (-3221.541) [-3212.221] (-3222.951) -- 0:12:16
207000 -- [-3208.991] (-3226.935) (-3213.897) (-3215.519) * (-3220.095) (-3222.934) [-3214.313] (-3218.773) -- 0:12:15
208000 -- (-3215.038) (-3214.123) [-3217.820] (-3215.748) * [-3214.235] (-3211.425) (-3214.657) (-3209.881) -- 0:12:11
209000 -- (-3213.465) (-3221.769) (-3209.682) [-3217.338] * (-3215.071) [-3212.641] (-3207.876) (-3210.507) -- 0:12:10
210000 -- [-3211.850] (-3215.034) (-3212.672) (-3231.527) * [-3220.091] (-3213.466) (-3211.250) (-3212.803) -- 0:12:09
Average standard deviation of split frequencies: 0.018512
211000 -- [-3215.998] (-3233.321) (-3208.917) (-3222.431) * (-3221.057) (-3219.534) (-3217.068) [-3209.541] -- 0:12:09
212000 -- (-3213.054) (-3222.660) [-3223.092] (-3218.412) * [-3216.143] (-3214.757) (-3217.740) (-3221.328) -- 0:12:08
213000 -- (-3206.351) (-3218.873) (-3224.393) [-3221.419] * [-3235.338] (-3207.406) (-3215.973) (-3212.654) -- 0:12:07
214000 -- [-3214.820] (-3220.842) (-3215.653) (-3213.656) * (-3221.622) [-3213.214] (-3214.564) (-3212.936) -- 0:12:07
215000 -- (-3212.471) (-3209.621) [-3215.822] (-3223.560) * (-3233.390) [-3215.174] (-3207.048) (-3218.872) -- 0:12:06
Average standard deviation of split frequencies: 0.018253
216000 -- (-3218.314) (-3212.702) (-3217.516) [-3215.537] * (-3215.261) [-3213.638] (-3220.448) (-3211.895) -- 0:12:05
217000 -- (-3213.036) [-3213.759] (-3218.572) (-3219.667) * [-3215.802] (-3221.213) (-3212.539) (-3210.979) -- 0:12:05
218000 -- (-3239.585) (-3212.363) (-3213.939) [-3204.807] * (-3217.549) (-3207.763) [-3215.826] (-3218.599) -- 0:12:04
219000 -- (-3215.155) (-3209.504) [-3220.849] (-3220.062) * [-3207.758] (-3207.552) (-3218.803) (-3209.493) -- 0:12:03
220000 -- (-3211.715) (-3216.954) [-3211.260] (-3222.970) * (-3218.030) (-3233.453) [-3210.619] (-3217.272) -- 0:12:03
Average standard deviation of split frequencies: 0.018158
221000 -- [-3209.757] (-3222.739) (-3217.797) (-3216.703) * (-3233.854) [-3216.205] (-3222.443) (-3218.894) -- 0:11:59
222000 -- (-3218.463) [-3209.383] (-3208.893) (-3215.417) * (-3216.539) (-3216.510) (-3216.662) [-3212.726] -- 0:11:58
223000 -- [-3219.587] (-3213.038) (-3222.502) (-3212.719) * (-3214.072) (-3215.029) (-3218.157) [-3206.259] -- 0:11:57
224000 -- [-3217.885] (-3221.573) (-3214.414) (-3216.012) * (-3214.243) [-3206.344] (-3209.195) (-3227.480) -- 0:11:57
225000 -- [-3223.178] (-3218.960) (-3205.045) (-3219.460) * (-3216.214) [-3222.601] (-3219.151) (-3218.639) -- 0:11:56
Average standard deviation of split frequencies: 0.020479
226000 -- (-3224.498) [-3208.221] (-3209.601) (-3214.420) * (-3220.463) (-3214.623) [-3215.069] (-3214.841) -- 0:11:55
227000 -- (-3219.245) (-3223.796) (-3227.866) [-3223.494] * (-3214.783) (-3214.472) (-3218.380) [-3216.046] -- 0:11:55
228000 -- (-3212.449) [-3210.334] (-3222.515) (-3223.136) * [-3216.136] (-3213.261) (-3231.674) (-3219.737) -- 0:11:54
229000 -- [-3214.624] (-3210.688) (-3220.472) (-3220.843) * [-3217.673] (-3214.284) (-3217.847) (-3209.877) -- 0:11:53
230000 -- (-3211.544) [-3208.585] (-3217.270) (-3213.246) * (-3220.844) [-3218.902] (-3218.649) (-3208.535) -- 0:11:53
Average standard deviation of split frequencies: 0.018857
231000 -- (-3212.735) (-3223.375) [-3213.203] (-3223.337) * (-3216.324) (-3221.381) (-3220.584) [-3212.814] -- 0:11:52
232000 -- (-3212.664) (-3216.458) [-3213.668] (-3220.304) * (-3211.156) (-3217.663) [-3214.011] (-3224.569) -- 0:11:51
233000 -- (-3213.693) [-3214.423] (-3211.453) (-3218.330) * (-3217.144) [-3220.237] (-3216.848) (-3215.505) -- 0:11:51
234000 -- (-3220.329) [-3210.490] (-3224.606) (-3216.679) * [-3216.854] (-3209.865) (-3212.433) (-3222.620) -- 0:11:47
235000 -- [-3212.072] (-3209.758) (-3214.928) (-3214.825) * [-3206.779] (-3211.939) (-3214.015) (-3211.891) -- 0:11:46
Average standard deviation of split frequencies: 0.016979
236000 -- (-3209.963) [-3217.057] (-3218.579) (-3214.340) * (-3213.606) [-3219.177] (-3213.872) (-3211.735) -- 0:11:45
237000 -- (-3215.039) (-3216.570) [-3214.280] (-3226.532) * (-3214.287) (-3208.549) [-3210.548] (-3210.671) -- 0:11:45
238000 -- (-3221.803) [-3219.333] (-3210.370) (-3220.929) * (-3216.411) [-3214.294] (-3207.727) (-3218.376) -- 0:11:44
239000 -- [-3221.674] (-3213.666) (-3223.126) (-3205.178) * (-3221.021) (-3205.449) (-3214.897) [-3219.986] -- 0:11:43
240000 -- [-3211.479] (-3224.873) (-3219.447) (-3215.797) * (-3216.951) (-3219.810) [-3214.917] (-3216.236) -- 0:11:43
Average standard deviation of split frequencies: 0.016471
241000 -- (-3214.944) [-3215.596] (-3217.658) (-3211.157) * [-3217.781] (-3227.148) (-3221.588) (-3214.968) -- 0:11:42
242000 -- (-3214.035) [-3213.790] (-3218.149) (-3227.784) * (-3219.423) (-3225.448) (-3231.001) [-3222.184] -- 0:11:41
243000 -- [-3207.886] (-3214.095) (-3221.990) (-3212.114) * (-3221.860) (-3213.636) [-3218.976] (-3221.464) -- 0:11:40
244000 -- (-3213.402) (-3210.027) [-3208.461] (-3221.273) * [-3211.157] (-3212.200) (-3228.558) (-3212.411) -- 0:11:40
245000 -- (-3209.680) [-3208.684] (-3221.992) (-3218.281) * [-3213.338] (-3215.581) (-3217.144) (-3210.937) -- 0:11:39
Average standard deviation of split frequencies: 0.016288
246000 -- (-3230.231) [-3206.342] (-3209.077) (-3214.741) * (-3221.939) [-3213.902] (-3214.456) (-3216.829) -- 0:11:38
247000 -- (-3225.163) (-3213.337) [-3217.101] (-3211.608) * (-3216.081) [-3214.616] (-3227.695) (-3215.778) -- 0:11:35
248000 -- (-3229.508) (-3215.836) [-3220.571] (-3219.699) * [-3217.485] (-3223.098) (-3206.310) (-3218.257) -- 0:11:34
249000 -- (-3221.279) (-3227.512) [-3206.675] (-3217.342) * (-3225.106) (-3225.293) (-3219.073) [-3217.814] -- 0:11:33
250000 -- (-3223.119) (-3232.932) (-3216.432) [-3207.469] * (-3208.008) (-3218.717) [-3208.023] (-3215.157) -- 0:11:33
Average standard deviation of split frequencies: 0.015301
251000 -- (-3217.809) (-3226.920) (-3216.238) [-3211.176] * (-3221.023) [-3219.477] (-3226.768) (-3210.682) -- 0:11:32
252000 -- (-3214.034) (-3215.702) (-3214.690) [-3205.912] * (-3220.148) [-3219.087] (-3220.237) (-3221.425) -- 0:11:31
253000 -- (-3211.943) (-3219.931) [-3213.304] (-3214.872) * (-3211.813) [-3214.309] (-3212.282) (-3206.968) -- 0:11:30
254000 -- (-3219.838) [-3211.016] (-3213.515) (-3215.005) * (-3219.727) (-3213.584) [-3204.428] (-3216.385) -- 0:11:30
255000 -- (-3216.388) [-3215.117] (-3208.114) (-3221.792) * (-3217.552) (-3213.868) [-3207.199] (-3226.557) -- 0:11:29
Average standard deviation of split frequencies: 0.015401
256000 -- [-3209.290] (-3211.823) (-3212.857) (-3218.313) * (-3225.206) (-3229.478) (-3223.261) [-3207.922] -- 0:11:28
257000 -- (-3206.885) (-3223.652) [-3212.277] (-3228.700) * (-3207.433) [-3219.784] (-3228.323) (-3210.354) -- 0:11:28
258000 -- (-3207.578) [-3203.754] (-3209.982) (-3214.529) * (-3213.469) (-3221.054) (-3220.834) [-3203.760] -- 0:11:27
259000 -- (-3213.813) (-3216.928) [-3206.832] (-3219.860) * (-3219.872) (-3221.380) (-3216.992) [-3216.075] -- 0:11:23
260000 -- (-3216.650) [-3212.351] (-3215.026) (-3229.334) * (-3222.755) (-3214.329) [-3209.311] (-3214.251) -- 0:11:23
Average standard deviation of split frequencies: 0.012988
261000 -- (-3212.699) (-3228.061) [-3212.568] (-3215.294) * (-3237.828) [-3217.352] (-3213.493) (-3217.866) -- 0:11:22
262000 -- (-3211.098) [-3212.484] (-3226.628) (-3223.888) * (-3221.449) [-3217.434] (-3219.418) (-3227.514) -- 0:11:21
263000 -- (-3215.813) [-3212.669] (-3207.088) (-3224.819) * (-3222.248) [-3227.427] (-3215.921) (-3202.362) -- 0:11:20
264000 -- (-3218.952) [-3215.601] (-3216.017) (-3217.204) * (-3226.218) (-3226.497) (-3217.003) [-3212.308] -- 0:11:20
265000 -- (-3218.734) [-3221.737] (-3215.919) (-3209.594) * [-3215.452] (-3228.755) (-3226.539) (-3209.307) -- 0:11:19
Average standard deviation of split frequencies: 0.014016
266000 -- [-3213.807] (-3212.971) (-3216.202) (-3228.571) * (-3220.041) (-3223.852) (-3224.580) [-3215.610] -- 0:11:18
267000 -- (-3214.198) [-3215.681] (-3214.065) (-3235.948) * [-3221.716] (-3231.160) (-3224.988) (-3219.347) -- 0:11:18
268000 -- [-3213.430] (-3219.026) (-3209.501) (-3233.945) * (-3209.914) (-3219.991) (-3208.837) [-3211.749] -- 0:11:17
269000 -- (-3207.943) [-3220.231] (-3210.711) (-3214.905) * [-3214.275] (-3218.403) (-3222.693) (-3213.551) -- 0:11:16
270000 -- [-3213.321] (-3219.735) (-3215.105) (-3225.096) * (-3213.882) (-3221.714) [-3216.033] (-3218.078) -- 0:11:15
Average standard deviation of split frequencies: 0.013696
271000 -- (-3211.829) (-3215.190) [-3213.720] (-3218.424) * [-3202.089] (-3213.984) (-3205.661) (-3221.217) -- 0:11:12
272000 -- (-3211.197) [-3208.368] (-3210.000) (-3219.148) * (-3223.452) (-3227.835) [-3209.394] (-3211.292) -- 0:11:11
273000 -- (-3208.225) [-3215.025] (-3214.053) (-3216.164) * (-3224.390) [-3207.470] (-3224.656) (-3222.544) -- 0:11:11
274000 -- (-3206.159) (-3221.891) (-3224.605) [-3216.764] * (-3223.976) (-3210.202) [-3213.193] (-3233.598) -- 0:11:10
275000 -- [-3214.243] (-3217.574) (-3220.080) (-3222.967) * (-3220.572) (-3216.355) [-3210.340] (-3208.668) -- 0:11:09
Average standard deviation of split frequencies: 0.014207
276000 -- (-3221.809) (-3223.040) [-3209.724] (-3212.864) * [-3221.676] (-3219.452) (-3210.973) (-3220.575) -- 0:11:08
277000 -- [-3220.541] (-3216.889) (-3212.911) (-3231.316) * (-3224.869) (-3228.436) (-3210.310) [-3213.282] -- 0:11:08
278000 -- (-3218.164) (-3211.719) (-3216.946) [-3208.145] * (-3224.251) [-3215.654] (-3218.788) (-3223.858) -- 0:11:07
279000 -- (-3210.910) (-3221.095) (-3227.507) [-3216.505] * (-3219.219) (-3233.838) (-3228.090) [-3207.814] -- 0:11:06
280000 -- (-3208.745) (-3204.514) (-3215.014) [-3214.885] * [-3211.072] (-3223.385) (-3219.708) (-3210.696) -- 0:11:06
Average standard deviation of split frequencies: 0.013742
281000 -- (-3224.391) (-3222.642) (-3217.750) [-3216.692] * (-3211.926) (-3221.909) (-3212.539) [-3211.293] -- 0:11:05
282000 -- [-3209.829] (-3216.245) (-3212.196) (-3218.723) * (-3218.250) [-3220.720] (-3220.586) (-3211.974) -- 0:11:04
283000 -- [-3213.133] (-3213.389) (-3220.440) (-3218.223) * (-3214.976) [-3212.621] (-3216.324) (-3220.476) -- 0:11:01
284000 -- (-3214.704) (-3221.430) [-3221.393] (-3215.901) * (-3215.696) [-3215.319] (-3227.790) (-3217.241) -- 0:11:00
285000 -- (-3232.945) (-3221.911) (-3206.885) [-3211.663] * [-3218.210] (-3206.976) (-3217.159) (-3217.446) -- 0:10:59
Average standard deviation of split frequencies: 0.013486
286000 -- (-3213.495) (-3219.661) (-3209.142) [-3212.995] * [-3210.034] (-3209.406) (-3213.800) (-3212.661) -- 0:10:59
287000 -- (-3211.953) (-3211.322) [-3218.159] (-3210.722) * (-3218.671) (-3220.972) [-3218.223] (-3208.280) -- 0:10:58
288000 -- [-3213.185] (-3227.052) (-3211.095) (-3212.245) * (-3215.586) (-3216.014) (-3209.896) [-3218.423] -- 0:10:57
289000 -- (-3225.901) (-3224.871) [-3204.881] (-3210.456) * (-3215.010) (-3211.042) (-3208.988) [-3212.830] -- 0:10:56
290000 -- (-3214.989) (-3223.898) (-3222.955) [-3211.461] * [-3210.884] (-3214.362) (-3221.687) (-3209.071) -- 0:10:56
Average standard deviation of split frequencies: 0.013269
291000 -- (-3215.401) (-3225.101) (-3221.225) [-3207.389] * (-3214.399) (-3213.012) [-3219.995] (-3220.547) -- 0:10:55
292000 -- (-3213.590) (-3219.969) (-3215.212) [-3219.474] * [-3214.062] (-3215.278) (-3215.976) (-3219.948) -- 0:10:54
293000 -- (-3223.678) [-3208.826] (-3231.460) (-3207.954) * [-3214.962] (-3228.203) (-3216.707) (-3213.743) -- 0:10:53
294000 -- (-3221.558) (-3216.247) (-3226.533) [-3208.521] * (-3223.713) (-3213.033) [-3215.121] (-3213.848) -- 0:10:53
295000 -- (-3223.274) (-3229.988) [-3215.235] (-3212.580) * (-3217.494) (-3214.169) (-3224.966) [-3212.203] -- 0:10:52
Average standard deviation of split frequencies: 0.013103
296000 -- [-3222.316] (-3225.725) (-3210.083) (-3215.294) * (-3227.628) [-3209.860] (-3208.866) (-3219.311) -- 0:10:51
297000 -- (-3209.659) (-3238.386) (-3226.542) [-3212.669] * (-3229.481) (-3217.128) [-3208.566] (-3214.218) -- 0:10:50
298000 -- [-3208.014] (-3230.505) (-3220.484) (-3207.922) * (-3214.213) [-3207.388] (-3215.638) (-3219.268) -- 0:10:50
299000 -- (-3208.933) (-3226.330) (-3217.244) [-3210.152] * (-3219.737) [-3214.084] (-3222.245) (-3209.383) -- 0:10:47
300000 -- (-3215.128) (-3218.698) [-3210.807] (-3223.457) * (-3222.944) (-3214.132) [-3218.451] (-3222.138) -- 0:10:46
Average standard deviation of split frequencies: 0.013256
301000 -- (-3229.020) [-3210.239] (-3207.710) (-3208.801) * (-3224.784) (-3220.212) [-3221.165] (-3225.773) -- 0:10:45
302000 -- (-3209.690) (-3215.904) (-3222.549) [-3207.340] * [-3209.054] (-3222.312) (-3216.107) (-3227.742) -- 0:10:44
303000 -- (-3211.871) (-3212.866) (-3217.591) [-3213.767] * (-3219.840) [-3216.439] (-3215.582) (-3222.182) -- 0:10:44
304000 -- (-3217.491) [-3218.201] (-3213.773) (-3204.479) * [-3214.765] (-3211.795) (-3207.697) (-3210.761) -- 0:10:43
305000 -- (-3227.543) (-3225.708) (-3234.873) [-3215.167] * (-3212.408) [-3214.138] (-3214.223) (-3220.492) -- 0:10:42
Average standard deviation of split frequencies: 0.013515
306000 -- (-3231.083) (-3227.802) [-3213.878] (-3211.997) * (-3218.878) (-3222.532) [-3212.852] (-3212.246) -- 0:10:41
307000 -- (-3212.556) (-3235.327) (-3226.517) [-3208.264] * [-3213.691] (-3211.856) (-3216.852) (-3221.021) -- 0:10:41
308000 -- (-3218.788) (-3217.258) [-3211.735] (-3218.992) * (-3214.967) [-3211.569] (-3209.862) (-3217.211) -- 0:10:40
309000 -- (-3218.726) (-3215.182) (-3221.373) [-3211.282] * (-3221.401) (-3222.392) (-3212.909) [-3216.592] -- 0:10:39
310000 -- (-3216.974) [-3215.279] (-3219.874) (-3215.489) * (-3209.939) [-3213.833] (-3230.686) (-3217.944) -- 0:10:38
Average standard deviation of split frequencies: 0.013174
311000 -- [-3211.495] (-3219.942) (-3229.329) (-3223.299) * (-3214.470) [-3219.906] (-3209.456) (-3216.594) -- 0:10:38
312000 -- [-3206.894] (-3210.086) (-3219.328) (-3220.949) * (-3212.805) (-3217.691) [-3209.466] (-3215.594) -- 0:10:35
313000 -- (-3216.077) (-3218.688) [-3215.513] (-3211.650) * (-3211.818) (-3210.817) [-3215.081] (-3216.171) -- 0:10:34
314000 -- (-3223.942) (-3226.871) (-3225.163) [-3223.260] * (-3210.079) (-3217.997) (-3210.119) [-3207.805] -- 0:10:33
315000 -- (-3222.971) [-3214.015] (-3211.485) (-3225.709) * (-3212.822) (-3216.247) [-3211.095] (-3213.655) -- 0:10:32
Average standard deviation of split frequencies: 0.012816
316000 -- [-3214.813] (-3222.598) (-3217.220) (-3219.592) * (-3217.169) (-3209.292) [-3215.208] (-3218.466) -- 0:10:32
317000 -- (-3217.381) [-3212.704] (-3211.928) (-3228.607) * (-3214.271) (-3229.065) [-3216.022] (-3212.343) -- 0:10:31
318000 -- (-3210.673) [-3222.133] (-3212.991) (-3218.613) * (-3215.235) (-3221.063) (-3218.918) [-3219.892] -- 0:10:30
319000 -- [-3213.404] (-3221.098) (-3214.203) (-3224.490) * (-3216.475) (-3212.592) [-3218.009] (-3216.032) -- 0:10:29
320000 -- (-3216.089) [-3212.438] (-3225.084) (-3222.985) * (-3215.695) (-3213.597) (-3228.555) [-3212.908] -- 0:10:29
Average standard deviation of split frequencies: 0.012562
321000 -- (-3216.209) (-3213.229) (-3227.684) [-3216.132] * (-3220.998) (-3213.575) [-3211.582] (-3212.977) -- 0:10:28
322000 -- (-3215.690) [-3215.783] (-3212.323) (-3226.541) * (-3210.193) [-3207.564] (-3213.061) (-3220.685) -- 0:10:27
323000 -- (-3227.021) (-3217.281) (-3217.627) [-3215.740] * [-3202.384] (-3217.821) (-3217.994) (-3211.501) -- 0:10:26
324000 -- (-3223.590) (-3220.802) (-3220.516) [-3215.138] * (-3217.628) [-3219.171] (-3210.233) (-3214.469) -- 0:10:25
325000 -- (-3216.119) [-3220.777] (-3213.452) (-3223.898) * (-3222.112) [-3215.039] (-3221.440) (-3214.287) -- 0:10:25
Average standard deviation of split frequencies: 0.011634
326000 -- (-3210.313) (-3217.740) [-3212.846] (-3228.260) * (-3221.493) (-3216.880) [-3218.157] (-3215.595) -- 0:10:22
327000 -- (-3214.920) (-3214.155) [-3215.753] (-3212.529) * (-3213.418) (-3214.674) (-3212.520) [-3213.406] -- 0:10:21
328000 -- [-3215.135] (-3222.627) (-3217.675) (-3215.030) * (-3213.046) [-3219.359] (-3218.633) (-3222.633) -- 0:10:20
329000 -- (-3218.876) [-3213.435] (-3213.095) (-3208.019) * [-3216.299] (-3230.124) (-3216.279) (-3211.203) -- 0:10:20
330000 -- (-3222.753) (-3224.396) [-3215.490] (-3210.347) * (-3217.090) (-3224.045) (-3215.842) [-3210.602] -- 0:10:19
Average standard deviation of split frequencies: 0.011081
331000 -- (-3216.523) [-3210.470] (-3222.424) (-3216.299) * (-3218.963) (-3221.932) (-3219.072) [-3214.412] -- 0:10:18
332000 -- [-3226.394] (-3214.681) (-3224.989) (-3219.321) * (-3210.765) (-3224.521) [-3209.291] (-3218.294) -- 0:10:17
333000 -- (-3216.739) (-3214.955) [-3211.489] (-3223.599) * (-3218.245) (-3218.116) [-3211.734] (-3211.485) -- 0:10:16
334000 -- (-3230.812) (-3216.439) (-3206.879) [-3220.558] * (-3229.013) (-3220.302) [-3217.258] (-3217.796) -- 0:10:16
335000 -- (-3232.504) (-3210.105) [-3216.743] (-3214.927) * (-3234.611) (-3220.052) [-3208.194] (-3233.766) -- 0:10:15
Average standard deviation of split frequencies: 0.010586
336000 -- (-3222.798) (-3209.888) (-3212.967) [-3214.027] * (-3229.883) (-3216.645) (-3215.510) [-3208.396] -- 0:10:14
337000 -- (-3223.551) (-3220.801) [-3211.492] (-3216.233) * (-3231.273) [-3215.677] (-3216.062) (-3219.112) -- 0:10:13
338000 -- (-3220.938) (-3227.520) [-3213.646] (-3217.605) * (-3217.519) [-3217.786] (-3238.320) (-3215.472) -- 0:10:13
339000 -- [-3210.311] (-3213.458) (-3213.833) (-3208.768) * (-3212.600) [-3216.723] (-3224.376) (-3213.947) -- 0:10:10
340000 -- [-3215.335] (-3216.320) (-3209.046) (-3213.733) * [-3209.690] (-3217.354) (-3222.666) (-3223.325) -- 0:10:09
Average standard deviation of split frequencies: 0.010064
341000 -- (-3216.423) (-3215.127) (-3218.714) [-3209.118] * (-3211.302) (-3220.139) [-3215.308] (-3216.644) -- 0:10:08
342000 -- (-3218.623) (-3221.121) (-3226.141) [-3208.989] * (-3226.705) (-3218.873) (-3229.916) [-3217.579] -- 0:10:07
343000 -- (-3224.331) [-3213.979] (-3226.030) (-3216.987) * (-3228.426) (-3215.804) [-3215.505] (-3208.656) -- 0:10:07
344000 -- (-3213.005) (-3220.455) (-3220.842) [-3204.228] * [-3219.057] (-3211.607) (-3230.510) (-3216.285) -- 0:10:06
345000 -- (-3216.941) (-3211.147) [-3220.259] (-3209.212) * (-3218.168) [-3215.352] (-3226.556) (-3212.623) -- 0:10:05
Average standard deviation of split frequencies: 0.009475
346000 -- (-3211.419) [-3209.247] (-3221.244) (-3214.337) * [-3209.708] (-3212.171) (-3215.854) (-3214.783) -- 0:10:04
347000 -- [-3218.369] (-3215.295) (-3224.360) (-3211.440) * (-3220.521) (-3214.969) (-3217.014) [-3216.153] -- 0:10:04
348000 -- (-3214.801) (-3214.067) (-3214.890) [-3211.440] * (-3217.921) (-3218.081) [-3216.276] (-3229.542) -- 0:10:03
349000 -- (-3211.889) [-3208.611] (-3215.893) (-3213.614) * [-3206.929] (-3219.935) (-3210.470) (-3213.495) -- 0:10:02
350000 -- (-3209.541) (-3219.433) (-3224.420) [-3214.103] * (-3219.211) (-3209.050) [-3207.419] (-3219.281) -- 0:10:01
Average standard deviation of split frequencies: 0.010816
351000 -- (-3209.967) [-3222.671] (-3218.288) (-3217.351) * (-3220.674) [-3220.050] (-3213.090) (-3221.205) -- 0:10:00
352000 -- [-3209.776] (-3220.313) (-3211.417) (-3210.420) * (-3219.053) [-3220.881] (-3220.434) (-3214.560) -- 0:09:58
353000 -- (-3229.771) (-3212.809) [-3210.847] (-3212.816) * (-3215.596) [-3221.435] (-3223.375) (-3222.723) -- 0:09:57
354000 -- [-3217.463] (-3220.700) (-3208.291) (-3212.661) * (-3215.709) [-3215.080] (-3224.418) (-3205.025) -- 0:09:56
355000 -- (-3223.899) (-3214.991) [-3209.906] (-3221.825) * (-3216.298) (-3217.844) [-3215.694] (-3218.171) -- 0:09:55
Average standard deviation of split frequencies: 0.011255
356000 -- (-3209.574) [-3209.772] (-3212.058) (-3220.265) * (-3221.279) (-3218.207) (-3222.218) [-3218.912] -- 0:09:55
357000 -- (-3213.559) [-3217.209] (-3216.244) (-3227.479) * (-3214.637) [-3213.105] (-3216.943) (-3215.828) -- 0:09:54
358000 -- (-3224.702) (-3212.304) [-3209.091] (-3229.328) * (-3213.419) [-3215.257] (-3212.724) (-3212.270) -- 0:09:53
359000 -- [-3220.176] (-3214.411) (-3211.474) (-3227.995) * (-3223.729) (-3215.098) (-3217.443) [-3227.325] -- 0:09:52
360000 -- (-3218.389) [-3215.100] (-3209.710) (-3211.269) * (-3213.841) [-3204.125] (-3216.778) (-3212.730) -- 0:09:52
Average standard deviation of split frequencies: 0.011288
361000 -- (-3220.807) (-3219.682) [-3219.470] (-3216.439) * (-3222.395) (-3215.832) [-3220.128] (-3212.006) -- 0:09:51
362000 -- (-3225.528) (-3214.107) [-3201.946] (-3219.903) * [-3215.122] (-3213.691) (-3212.589) (-3212.562) -- 0:09:50
363000 -- (-3216.874) (-3223.743) [-3217.836] (-3217.221) * (-3221.925) (-3215.107) (-3214.422) [-3213.323] -- 0:09:49
364000 -- [-3212.992] (-3218.075) (-3218.267) (-3206.506) * (-3216.248) (-3221.403) [-3206.722] (-3223.128) -- 0:09:47
365000 -- [-3210.956] (-3205.777) (-3210.453) (-3217.351) * (-3214.561) (-3222.624) [-3208.019] (-3222.423) -- 0:09:46
Average standard deviation of split frequencies: 0.011124
366000 -- (-3215.496) [-3214.222] (-3212.910) (-3222.465) * (-3212.852) (-3217.187) [-3209.144] (-3213.657) -- 0:09:45
367000 -- (-3214.676) (-3218.462) [-3208.111] (-3225.145) * (-3212.104) [-3205.498] (-3213.007) (-3220.982) -- 0:09:44
368000 -- (-3227.691) (-3219.779) (-3209.077) [-3208.203] * (-3217.825) (-3223.116) [-3221.260] (-3215.215) -- 0:09:43
369000 -- [-3219.844] (-3221.333) (-3214.217) (-3216.829) * (-3230.647) (-3216.477) (-3220.855) [-3220.926] -- 0:09:43
370000 -- (-3230.321) (-3231.423) [-3211.261] (-3213.967) * [-3211.399] (-3222.260) (-3212.177) (-3210.605) -- 0:09:42
Average standard deviation of split frequencies: 0.011273
371000 -- (-3224.582) (-3215.968) (-3220.573) [-3211.189] * (-3212.917) [-3209.199] (-3225.576) (-3210.364) -- 0:09:41
372000 -- [-3209.897] (-3219.707) (-3215.742) (-3223.306) * (-3211.365) (-3218.916) (-3218.380) [-3207.455] -- 0:09:40
373000 -- (-3223.249) [-3213.030] (-3229.341) (-3226.038) * (-3214.362) (-3222.324) (-3217.493) [-3220.134] -- 0:09:39
374000 -- (-3207.760) [-3220.628] (-3229.503) (-3216.601) * [-3217.194] (-3228.438) (-3213.762) (-3216.232) -- 0:09:39
375000 -- (-3213.070) (-3227.792) [-3216.684] (-3218.200) * (-3222.461) (-3215.198) [-3218.498] (-3216.240) -- 0:09:36
Average standard deviation of split frequencies: 0.011227
376000 -- (-3215.677) (-3214.801) [-3212.254] (-3219.113) * (-3240.074) (-3214.516) [-3218.596] (-3221.864) -- 0:09:35
377000 -- (-3221.816) [-3217.524] (-3209.589) (-3225.714) * (-3225.074) [-3223.025] (-3212.223) (-3226.819) -- 0:09:35
378000 -- (-3225.157) [-3217.615] (-3231.527) (-3220.142) * (-3216.205) [-3210.309] (-3227.272) (-3214.690) -- 0:09:34
379000 -- (-3221.537) [-3220.755] (-3214.518) (-3220.981) * (-3220.737) [-3205.656] (-3222.762) (-3209.747) -- 0:09:33
380000 -- (-3224.406) (-3226.631) [-3210.462] (-3215.799) * [-3219.301] (-3209.758) (-3226.589) (-3221.478) -- 0:09:32
Average standard deviation of split frequencies: 0.011596
381000 -- [-3217.285] (-3215.969) (-3224.886) (-3220.963) * [-3213.558] (-3217.785) (-3218.784) (-3225.691) -- 0:09:31
382000 -- (-3213.507) (-3216.081) (-3226.686) [-3209.014] * (-3213.678) (-3213.341) [-3208.999] (-3224.969) -- 0:09:31
383000 -- (-3214.918) (-3234.773) [-3214.524] (-3215.778) * (-3206.164) (-3211.578) [-3210.657] (-3215.414) -- 0:09:30
384000 -- (-3222.064) [-3213.639] (-3217.095) (-3217.037) * (-3211.202) (-3230.073) [-3211.799] (-3217.796) -- 0:09:29
385000 -- (-3221.610) (-3216.068) (-3215.298) [-3213.783] * [-3217.382] (-3208.380) (-3213.105) (-3207.525) -- 0:09:28
Average standard deviation of split frequencies: 0.012046
386000 -- (-3218.134) [-3224.656] (-3212.099) (-3219.098) * (-3226.478) [-3211.140] (-3218.214) (-3211.470) -- 0:09:27
387000 -- (-3220.885) [-3213.260] (-3218.667) (-3216.635) * (-3211.368) (-3216.299) (-3215.723) [-3213.784] -- 0:09:27
388000 -- (-3217.321) [-3218.108] (-3224.068) (-3227.240) * (-3205.923) (-3225.835) (-3213.264) [-3213.940] -- 0:09:24
389000 -- (-3217.337) [-3212.155] (-3219.962) (-3229.865) * (-3222.270) (-3220.233) (-3222.115) [-3216.188] -- 0:09:23
390000 -- (-3222.608) (-3216.492) [-3205.984] (-3219.702) * [-3222.094] (-3226.196) (-3221.270) (-3210.079) -- 0:09:23
Average standard deviation of split frequencies: 0.011244
391000 -- (-3213.497) (-3221.417) (-3222.848) [-3220.503] * (-3216.588) (-3212.506) (-3230.255) [-3211.917] -- 0:09:22
392000 -- [-3213.521] (-3208.840) (-3218.573) (-3219.381) * (-3220.976) (-3217.253) [-3215.731] (-3215.863) -- 0:09:21
393000 -- (-3224.828) [-3213.078] (-3223.879) (-3219.068) * (-3210.323) (-3218.496) [-3207.947] (-3225.383) -- 0:09:20
394000 -- (-3223.089) [-3219.491] (-3217.869) (-3219.824) * (-3221.584) [-3219.052] (-3217.172) (-3222.264) -- 0:09:19
395000 -- [-3205.833] (-3217.788) (-3224.698) (-3225.839) * (-3213.150) (-3221.140) (-3222.541) [-3217.303] -- 0:09:19
Average standard deviation of split frequencies: 0.010173
396000 -- (-3218.356) [-3204.756] (-3218.266) (-3224.337) * [-3208.198] (-3216.009) (-3217.546) (-3209.314) -- 0:09:18
397000 -- (-3210.239) (-3227.636) [-3206.882] (-3214.751) * (-3223.616) (-3226.655) [-3217.537] (-3227.191) -- 0:09:17
398000 -- [-3213.365] (-3217.557) (-3219.272) (-3216.838) * [-3216.841] (-3227.336) (-3220.498) (-3218.467) -- 0:09:16
399000 -- [-3221.935] (-3221.825) (-3213.798) (-3216.964) * (-3213.356) [-3213.914] (-3226.143) (-3218.954) -- 0:09:15
400000 -- (-3207.636) (-3218.160) [-3215.065] (-3223.124) * (-3221.892) (-3225.144) [-3215.886] (-3216.053) -- 0:09:15
Average standard deviation of split frequencies: 0.009840
401000 -- (-3219.587) (-3216.674) [-3214.767] (-3228.822) * (-3221.538) (-3231.980) (-3208.509) [-3216.443] -- 0:09:12
402000 -- (-3211.309) (-3221.103) (-3223.348) [-3219.803] * [-3213.730] (-3232.158) (-3223.390) (-3210.713) -- 0:09:11
403000 -- (-3230.034) (-3216.038) [-3208.470] (-3221.092) * (-3216.631) (-3222.098) (-3204.787) [-3206.378] -- 0:09:11
404000 -- (-3215.736) [-3215.632] (-3220.748) (-3215.619) * (-3219.211) (-3211.550) (-3223.341) [-3207.928] -- 0:09:10
405000 -- (-3214.263) (-3212.091) (-3209.841) [-3218.957] * [-3207.502] (-3212.156) (-3208.785) (-3222.860) -- 0:09:09
Average standard deviation of split frequencies: 0.009289
406000 -- (-3238.086) (-3215.732) [-3209.453] (-3214.866) * [-3224.122] (-3212.704) (-3234.424) (-3210.102) -- 0:09:08
407000 -- (-3212.543) [-3215.973] (-3218.052) (-3208.142) * (-3223.941) (-3219.231) (-3219.774) [-3211.310] -- 0:09:07
408000 -- (-3235.580) (-3215.038) [-3213.279] (-3228.934) * [-3211.800] (-3215.885) (-3207.947) (-3219.364) -- 0:09:07
409000 -- (-3234.501) [-3214.725] (-3221.608) (-3216.525) * (-3216.207) (-3214.270) [-3207.197] (-3204.650) -- 0:09:06
410000 -- (-3227.965) [-3214.880] (-3207.718) (-3224.356) * (-3225.732) (-3221.666) [-3215.689] (-3213.453) -- 0:09:05
Average standard deviation of split frequencies: 0.009444
411000 -- [-3224.928] (-3217.675) (-3215.884) (-3232.745) * (-3227.122) (-3212.469) (-3210.578) [-3205.756] -- 0:09:04
412000 -- [-3215.955] (-3220.602) (-3227.108) (-3219.600) * (-3208.387) [-3210.331] (-3221.063) (-3219.998) -- 0:09:03
413000 -- [-3217.775] (-3221.069) (-3217.353) (-3212.544) * (-3213.960) [-3215.768] (-3215.986) (-3226.978) -- 0:09:02
414000 -- [-3224.807] (-3213.775) (-3213.873) (-3217.066) * (-3215.928) (-3219.901) (-3216.986) [-3204.951] -- 0:09:00
415000 -- [-3210.220] (-3216.283) (-3215.186) (-3214.177) * [-3212.278] (-3215.213) (-3208.688) (-3213.254) -- 0:08:59
Average standard deviation of split frequencies: 0.009787
416000 -- (-3223.225) (-3215.624) [-3211.767] (-3224.140) * (-3224.478) (-3219.588) [-3217.238] (-3210.278) -- 0:08:59
417000 -- [-3212.395] (-3214.616) (-3218.821) (-3218.351) * (-3213.009) (-3223.965) [-3208.538] (-3218.410) -- 0:08:58
418000 -- (-3219.774) (-3218.462) (-3225.509) [-3215.751] * (-3217.304) (-3227.095) [-3218.292] (-3210.868) -- 0:08:57
419000 -- (-3234.992) (-3221.129) [-3225.807] (-3223.020) * (-3214.585) (-3229.970) [-3215.379] (-3211.605) -- 0:08:56
420000 -- [-3215.322] (-3220.772) (-3221.765) (-3219.263) * (-3222.403) (-3216.142) (-3209.643) [-3206.459] -- 0:08:55
Average standard deviation of split frequencies: 0.009067
421000 -- (-3222.010) (-3225.076) (-3216.825) [-3220.505] * (-3225.552) (-3214.492) (-3211.917) [-3213.997] -- 0:08:54
422000 -- (-3220.208) (-3221.058) (-3216.927) [-3214.188] * (-3225.453) (-3217.779) (-3219.517) [-3218.602] -- 0:08:54
423000 -- (-3214.982) (-3217.976) (-3208.464) [-3220.729] * (-3215.688) (-3217.769) (-3217.028) [-3217.471] -- 0:08:53
424000 -- (-3214.329) (-3227.639) (-3215.205) [-3216.345] * (-3235.713) [-3214.016] (-3206.043) (-3218.058) -- 0:08:52
425000 -- (-3228.098) (-3209.368) (-3216.308) [-3218.372] * (-3210.293) (-3214.624) (-3216.457) [-3215.877] -- 0:08:51
Average standard deviation of split frequencies: 0.008651
426000 -- (-3215.628) (-3223.090) (-3216.549) [-3207.268] * (-3211.550) [-3221.687] (-3223.524) (-3219.316) -- 0:08:50
427000 -- (-3213.751) [-3220.077] (-3221.532) (-3222.579) * [-3216.478] (-3221.215) (-3213.239) (-3212.498) -- 0:08:48
428000 -- (-3220.639) [-3212.929] (-3231.246) (-3215.660) * (-3228.325) [-3209.084] (-3219.208) (-3215.614) -- 0:08:47
429000 -- [-3210.800] (-3217.697) (-3217.631) (-3219.971) * (-3219.861) [-3217.110] (-3222.114) (-3229.296) -- 0:08:47
430000 -- [-3206.538] (-3214.594) (-3216.365) (-3223.515) * (-3222.690) [-3211.899] (-3212.052) (-3224.712) -- 0:08:46
Average standard deviation of split frequencies: 0.008160
431000 -- (-3214.691) (-3230.026) [-3222.655] (-3216.113) * [-3205.734] (-3210.156) (-3219.038) (-3210.354) -- 0:08:45
432000 -- (-3212.638) [-3213.557] (-3218.284) (-3222.030) * (-3215.390) [-3210.820] (-3219.738) (-3210.236) -- 0:08:44
433000 -- [-3212.810] (-3216.427) (-3212.377) (-3206.479) * (-3211.748) [-3219.016] (-3230.675) (-3219.496) -- 0:08:43
434000 -- (-3219.558) [-3219.183] (-3211.337) (-3219.343) * (-3227.155) (-3216.864) [-3217.442] (-3221.384) -- 0:08:42
435000 -- (-3221.532) (-3208.142) (-3217.738) [-3211.141] * (-3224.277) (-3222.893) (-3226.945) [-3219.857] -- 0:08:42
Average standard deviation of split frequencies: 0.008011
436000 -- (-3218.312) (-3215.540) [-3219.797] (-3216.161) * (-3213.855) (-3241.023) [-3212.659] (-3220.882) -- 0:08:41
437000 -- (-3224.171) (-3222.974) [-3212.577] (-3212.297) * (-3216.790) (-3217.188) [-3213.485] (-3218.151) -- 0:08:40
438000 -- (-3214.250) (-3223.957) [-3211.779] (-3217.096) * [-3218.043] (-3211.907) (-3221.020) (-3218.765) -- 0:08:39
439000 -- (-3234.775) (-3215.813) [-3215.308] (-3218.031) * (-3215.766) (-3220.316) (-3222.651) [-3218.650] -- 0:08:38
440000 -- (-3230.203) (-3218.368) [-3217.918] (-3215.342) * (-3222.207) [-3213.934] (-3213.188) (-3214.641) -- 0:08:38
Average standard deviation of split frequencies: 0.008412
441000 -- (-3225.615) [-3215.861] (-3218.431) (-3206.077) * (-3215.585) [-3211.584] (-3218.182) (-3216.550) -- 0:08:35
442000 -- (-3215.815) [-3212.755] (-3223.836) (-3211.544) * [-3218.483] (-3218.211) (-3228.377) (-3212.132) -- 0:08:35
443000 -- (-3213.071) [-3203.593] (-3214.795) (-3213.392) * (-3219.766) [-3214.429] (-3213.486) (-3217.152) -- 0:08:34
444000 -- (-3207.839) [-3217.696] (-3219.850) (-3214.920) * (-3209.698) (-3211.223) (-3221.806) [-3209.285] -- 0:08:33
445000 -- (-3216.094) [-3221.547] (-3211.952) (-3213.160) * (-3209.009) (-3215.644) (-3217.723) [-3215.070] -- 0:08:32
Average standard deviation of split frequencies: 0.009272
446000 -- (-3212.849) (-3209.128) (-3214.357) [-3207.738] * [-3207.468] (-3215.365) (-3223.770) (-3220.891) -- 0:08:31
447000 -- (-3220.328) (-3217.863) [-3210.620] (-3227.491) * (-3218.658) [-3222.942] (-3216.483) (-3211.230) -- 0:08:30
448000 -- [-3209.426] (-3211.235) (-3220.065) (-3217.974) * (-3210.822) [-3211.168] (-3228.291) (-3217.765) -- 0:08:30
449000 -- (-3225.018) (-3211.086) (-3219.190) [-3209.452] * (-3214.536) (-3223.795) (-3228.144) [-3211.710] -- 0:08:29
450000 -- [-3216.700] (-3210.982) (-3213.315) (-3206.566) * [-3231.169] (-3204.190) (-3213.429) (-3212.580) -- 0:08:28
Average standard deviation of split frequencies: 0.008986
451000 -- (-3218.021) (-3218.062) [-3211.973] (-3228.738) * (-3209.721) (-3205.555) (-3225.412) [-3217.142] -- 0:08:27
452000 -- (-3214.043) [-3211.828] (-3212.275) (-3221.262) * (-3217.316) (-3210.119) (-3214.671) [-3208.080] -- 0:08:25
453000 -- [-3213.105] (-3211.474) (-3219.704) (-3211.526) * (-3215.738) (-3211.458) (-3222.244) [-3215.920] -- 0:08:24
454000 -- (-3212.433) [-3210.656] (-3214.822) (-3215.476) * (-3209.406) (-3225.805) (-3217.529) [-3212.002] -- 0:08:23
455000 -- [-3202.409] (-3224.550) (-3224.913) (-3222.815) * (-3213.085) (-3212.980) (-3215.233) [-3207.368] -- 0:08:23
Average standard deviation of split frequencies: 0.008693
456000 -- [-3215.246] (-3223.576) (-3219.552) (-3209.622) * (-3205.456) (-3209.368) (-3210.874) [-3218.306] -- 0:08:22
457000 -- (-3214.955) (-3229.235) (-3209.221) [-3211.224] * (-3225.070) (-3209.743) (-3208.459) [-3216.163] -- 0:08:21
458000 -- (-3219.014) (-3211.755) (-3234.024) [-3216.876] * [-3214.202] (-3208.721) (-3217.718) (-3214.586) -- 0:08:20
459000 -- (-3220.169) (-3222.683) [-3221.407] (-3217.202) * (-3219.704) (-3211.437) (-3230.318) [-3206.169] -- 0:08:19
460000 -- (-3219.352) [-3211.232] (-3219.073) (-3233.430) * (-3217.858) (-3221.941) [-3211.469] (-3213.083) -- 0:08:18
Average standard deviation of split frequencies: 0.008977
461000 -- (-3212.600) (-3213.609) [-3214.151] (-3216.935) * (-3212.557) (-3216.471) (-3223.468) [-3213.923] -- 0:08:18
462000 -- (-3213.348) [-3211.435] (-3224.267) (-3218.676) * (-3209.254) [-3221.057] (-3223.130) (-3228.916) -- 0:08:17
463000 -- (-3216.080) (-3215.554) (-3215.987) [-3219.795] * [-3209.848] (-3218.148) (-3225.550) (-3224.882) -- 0:08:16
464000 -- (-3224.967) (-3213.657) (-3216.606) [-3214.590] * (-3215.889) [-3208.269] (-3215.732) (-3217.533) -- 0:08:14
465000 -- (-3212.725) (-3211.268) (-3217.802) [-3228.225] * (-3215.375) (-3221.408) (-3215.191) [-3210.581] -- 0:08:13
Average standard deviation of split frequencies: 0.008599
466000 -- [-3207.017] (-3219.628) (-3223.115) (-3230.203) * [-3207.964] (-3215.655) (-3212.915) (-3223.678) -- 0:08:12
467000 -- [-3218.553] (-3236.348) (-3227.458) (-3223.140) * (-3227.080) [-3213.783] (-3217.186) (-3209.595) -- 0:08:11
468000 -- [-3217.608] (-3215.649) (-3212.446) (-3220.121) * (-3218.962) [-3209.549] (-3225.306) (-3222.167) -- 0:08:11
469000 -- (-3219.733) (-3229.413) [-3218.098] (-3218.357) * (-3230.009) [-3211.868] (-3228.835) (-3216.063) -- 0:08:10
470000 -- [-3204.108] (-3221.391) (-3232.248) (-3227.954) * [-3213.278] (-3207.301) (-3222.038) (-3216.723) -- 0:08:09
Average standard deviation of split frequencies: 0.009333
471000 -- [-3209.365] (-3218.655) (-3212.243) (-3224.914) * (-3215.188) [-3214.494] (-3217.269) (-3220.616) -- 0:08:08
472000 -- (-3213.041) (-3224.804) (-3213.442) [-3217.964] * (-3209.853) (-3218.826) (-3213.290) [-3210.482] -- 0:08:07
473000 -- (-3214.638) [-3209.912] (-3224.258) (-3219.912) * (-3209.194) (-3217.481) [-3210.365] (-3219.396) -- 0:08:06
474000 -- [-3208.472] (-3208.352) (-3218.058) (-3212.315) * (-3224.042) [-3212.698] (-3221.478) (-3223.949) -- 0:08:06
475000 -- (-3218.019) (-3216.583) [-3211.435] (-3207.044) * [-3210.647] (-3221.122) (-3211.973) (-3217.036) -- 0:08:05
Average standard deviation of split frequencies: 0.009228
476000 -- (-3222.774) (-3218.700) [-3213.420] (-3212.084) * (-3220.997) (-3227.105) (-3214.331) [-3208.494] -- 0:08:04
477000 -- (-3214.964) [-3212.067] (-3233.195) (-3210.524) * [-3215.248] (-3220.114) (-3225.698) (-3222.419) -- 0:08:02
478000 -- (-3210.884) (-3220.560) (-3220.077) [-3218.714] * (-3223.552) (-3224.207) (-3221.072) [-3213.092] -- 0:08:01
479000 -- (-3217.358) (-3213.707) (-3212.436) [-3209.393] * (-3210.751) (-3223.326) (-3214.910) [-3210.710] -- 0:08:00
480000 -- (-3218.821) (-3216.062) (-3218.305) [-3214.448] * (-3210.622) (-3215.498) [-3214.867] (-3230.704) -- 0:07:59
Average standard deviation of split frequencies: 0.008827
481000 -- (-3224.227) (-3219.196) [-3216.083] (-3218.517) * (-3213.931) (-3217.244) [-3218.881] (-3220.753) -- 0:07:59
482000 -- (-3213.999) (-3219.175) [-3213.097] (-3213.481) * (-3217.082) (-3220.208) [-3214.208] (-3227.458) -- 0:07:58
483000 -- (-3208.237) (-3219.367) [-3216.847] (-3213.273) * (-3219.408) (-3212.945) [-3208.427] (-3216.289) -- 0:07:57
484000 -- [-3220.943] (-3217.433) (-3225.477) (-3220.221) * [-3217.075] (-3226.870) (-3207.784) (-3210.205) -- 0:07:56
485000 -- (-3213.508) [-3204.915] (-3216.746) (-3218.927) * (-3221.276) (-3210.266) [-3221.345] (-3215.863) -- 0:07:55
Average standard deviation of split frequencies: 0.008289
486000 -- (-3215.732) [-3203.733] (-3209.626) (-3219.625) * (-3213.487) (-3223.189) [-3214.593] (-3219.475) -- 0:07:54
487000 -- (-3217.262) [-3217.836] (-3222.005) (-3215.801) * [-3211.973] (-3210.470) (-3215.699) (-3225.466) -- 0:07:54
488000 -- (-3215.140) (-3221.181) [-3208.394] (-3212.771) * (-3222.264) [-3211.432] (-3213.797) (-3211.481) -- 0:07:53
489000 -- (-3219.439) (-3222.623) [-3213.856] (-3231.040) * (-3221.126) [-3216.846] (-3218.215) (-3215.084) -- 0:07:52
490000 -- (-3217.624) (-3221.047) (-3219.147) [-3219.096] * (-3203.560) (-3221.472) [-3210.179] (-3214.998) -- 0:07:50
Average standard deviation of split frequencies: 0.007992
491000 -- (-3220.984) (-3226.481) [-3215.280] (-3224.996) * (-3219.435) (-3215.057) [-3205.747] (-3221.600) -- 0:07:49
492000 -- [-3216.193] (-3223.178) (-3222.503) (-3218.098) * (-3210.578) [-3215.566] (-3213.579) (-3213.891) -- 0:07:48
493000 -- (-3219.529) (-3221.546) (-3227.110) [-3203.987] * [-3207.533] (-3212.885) (-3211.667) (-3222.306) -- 0:07:47
494000 -- (-3217.129) (-3216.062) (-3212.952) [-3213.000] * (-3213.464) (-3212.272) [-3213.536] (-3221.451) -- 0:07:47
495000 -- [-3207.872] (-3226.629) (-3216.182) (-3214.292) * (-3214.607) [-3222.256] (-3211.694) (-3227.936) -- 0:07:46
Average standard deviation of split frequencies: 0.007906
496000 -- (-3217.071) (-3216.674) (-3209.726) [-3215.939] * [-3209.299] (-3207.994) (-3212.991) (-3211.594) -- 0:07:45
497000 -- [-3210.657] (-3212.877) (-3210.326) (-3214.764) * (-3221.160) (-3217.826) (-3223.185) [-3206.381] -- 0:07:44
498000 -- (-3220.061) [-3226.534] (-3221.015) (-3230.302) * (-3211.632) (-3209.436) [-3211.917] (-3214.405) -- 0:07:43
499000 -- (-3210.567) (-3217.562) (-3221.592) [-3213.973] * [-3212.654] (-3222.024) (-3220.363) (-3209.239) -- 0:07:42
500000 -- (-3218.334) (-3224.087) (-3210.351) [-3208.438] * (-3214.468) [-3221.053] (-3219.903) (-3215.307) -- 0:07:42
Average standard deviation of split frequencies: 0.007661
501000 -- (-3219.967) (-3216.723) (-3212.757) [-3211.926] * (-3207.514) [-3212.365] (-3211.074) (-3222.182) -- 0:07:41
502000 -- (-3216.863) (-3204.045) (-3221.284) [-3210.888] * (-3217.459) (-3223.154) (-3210.064) [-3211.287] -- 0:07:39
503000 -- (-3210.300) (-3207.051) [-3216.063] (-3220.089) * [-3211.724] (-3214.220) (-3224.673) (-3223.214) -- 0:07:38
504000 -- (-3221.628) (-3223.935) (-3221.231) [-3215.789] * (-3219.983) (-3208.850) [-3221.331] (-3221.916) -- 0:07:37
505000 -- (-3222.258) (-3209.925) [-3217.093] (-3204.848) * (-3223.423) (-3214.340) (-3222.208) [-3216.356] -- 0:07:36
Average standard deviation of split frequencies: 0.007538
506000 -- (-3212.035) [-3209.982] (-3230.151) (-3208.611) * (-3214.753) (-3227.204) [-3212.068] (-3210.855) -- 0:07:35
507000 -- (-3216.987) (-3210.454) [-3211.404] (-3219.288) * (-3217.800) (-3213.632) (-3216.436) [-3208.368] -- 0:07:35
508000 -- (-3213.305) (-3219.653) (-3218.125) [-3209.363] * (-3222.708) [-3221.913] (-3210.735) (-3213.684) -- 0:07:34
509000 -- (-3217.939) (-3219.151) [-3218.023] (-3214.565) * [-3212.134] (-3225.806) (-3214.423) (-3231.735) -- 0:07:33
510000 -- (-3225.747) (-3203.895) [-3211.361] (-3212.648) * (-3207.230) (-3215.339) [-3213.767] (-3225.169) -- 0:07:32
Average standard deviation of split frequencies: 0.007301
511000 -- (-3218.659) [-3213.247] (-3218.669) (-3211.307) * (-3215.190) (-3218.778) (-3219.821) [-3215.957] -- 0:07:31
512000 -- (-3218.596) (-3218.706) (-3221.456) [-3209.074] * (-3213.520) (-3223.116) (-3209.866) [-3204.079] -- 0:07:30
513000 -- [-3213.057] (-3213.921) (-3215.230) (-3216.191) * (-3222.663) (-3219.912) (-3215.381) [-3214.275] -- 0:07:29
514000 -- [-3216.542] (-3214.525) (-3230.174) (-3214.922) * (-3211.772) (-3219.349) (-3225.942) [-3217.131] -- 0:07:29
515000 -- (-3229.678) [-3200.363] (-3215.378) (-3218.717) * (-3212.186) [-3222.079] (-3218.227) (-3217.478) -- 0:07:27
Average standard deviation of split frequencies: 0.007475
516000 -- (-3218.801) (-3212.734) [-3225.869] (-3219.006) * [-3216.706] (-3210.374) (-3216.014) (-3221.882) -- 0:07:26
517000 -- (-3208.932) [-3211.335] (-3220.881) (-3220.875) * (-3219.226) [-3213.191] (-3207.866) (-3217.335) -- 0:07:25
518000 -- (-3218.798) [-3213.793] (-3207.027) (-3223.144) * (-3215.594) (-3214.537) (-3219.940) [-3203.220] -- 0:07:24
519000 -- (-3213.527) [-3216.264] (-3223.274) (-3214.950) * (-3214.027) [-3205.630] (-3212.012) (-3215.814) -- 0:07:23
520000 -- (-3219.765) (-3223.898) (-3209.813) [-3214.834] * (-3214.115) (-3220.296) (-3218.884) [-3216.372] -- 0:07:23
Average standard deviation of split frequencies: 0.007325
521000 -- (-3207.707) [-3208.697] (-3214.219) (-3215.811) * [-3209.363] (-3218.669) (-3211.112) (-3220.520) -- 0:07:22
522000 -- (-3206.823) (-3217.694) [-3210.889] (-3216.171) * [-3207.927] (-3209.048) (-3219.992) (-3216.972) -- 0:07:21
523000 -- (-3212.698) (-3224.925) (-3229.004) [-3212.707] * (-3219.407) (-3218.222) [-3211.129] (-3218.955) -- 0:07:20
524000 -- [-3211.929] (-3212.048) (-3231.907) (-3217.262) * (-3216.925) (-3207.760) [-3229.917] (-3221.556) -- 0:07:19
525000 -- (-3224.380) (-3224.651) (-3218.388) [-3214.940] * (-3216.943) (-3221.296) [-3222.065] (-3232.673) -- 0:07:18
Average standard deviation of split frequencies: 0.006884
526000 -- (-3227.545) (-3213.003) [-3207.483] (-3215.003) * (-3222.227) (-3212.655) (-3226.601) [-3201.080] -- 0:07:17
527000 -- [-3219.983] (-3219.199) (-3214.693) (-3210.755) * (-3213.281) (-3214.781) (-3226.723) [-3215.254] -- 0:07:16
528000 -- (-3217.615) [-3206.213] (-3214.904) (-3217.058) * (-3222.117) (-3225.292) (-3212.955) [-3214.335] -- 0:07:15
529000 -- (-3214.427) (-3222.162) [-3214.544] (-3222.139) * (-3226.977) [-3223.571] (-3216.977) (-3212.209) -- 0:07:14
530000 -- (-3226.998) (-3230.405) (-3220.479) [-3217.150] * (-3210.738) [-3211.738] (-3208.941) (-3218.256) -- 0:07:13
Average standard deviation of split frequencies: 0.007308
531000 -- (-3210.106) (-3210.854) (-3213.532) [-3206.878] * (-3228.664) [-3205.565] (-3222.554) (-3218.751) -- 0:07:12
532000 -- (-3216.904) [-3220.135] (-3221.220) (-3215.827) * (-3217.823) (-3210.426) (-3230.799) [-3214.045] -- 0:07:11
533000 -- (-3209.365) (-3219.292) (-3220.226) [-3210.628] * (-3229.181) [-3208.009] (-3219.801) (-3218.210) -- 0:07:11
534000 -- (-3214.697) (-3216.110) [-3215.479] (-3211.699) * [-3209.076] (-3211.705) (-3206.734) (-3225.135) -- 0:07:10
535000 -- (-3215.971) (-3221.885) (-3214.658) [-3211.459] * (-3211.967) (-3217.978) (-3205.333) [-3218.110] -- 0:07:09
Average standard deviation of split frequencies: 0.007196
536000 -- (-3206.544) (-3217.292) (-3208.203) [-3212.830] * [-3216.428] (-3218.626) (-3215.229) (-3216.622) -- 0:07:08
537000 -- [-3205.269] (-3216.862) (-3218.166) (-3209.507) * (-3217.414) [-3210.712] (-3214.730) (-3220.614) -- 0:07:07
538000 -- (-3213.171) (-3223.305) [-3209.111] (-3215.503) * (-3212.534) (-3209.487) (-3219.627) [-3217.739] -- 0:07:06
539000 -- [-3207.797] (-3220.727) (-3216.037) (-3214.392) * (-3217.371) (-3224.658) (-3212.295) [-3208.003] -- 0:07:05
540000 -- (-3219.261) [-3230.998] (-3219.394) (-3214.602) * (-3212.973) [-3220.689] (-3211.351) (-3225.339) -- 0:07:04
Average standard deviation of split frequencies: 0.007015
541000 -- (-3216.060) [-3211.843] (-3229.741) (-3210.598) * (-3217.224) (-3226.777) (-3214.969) [-3218.495] -- 0:07:03
542000 -- (-3209.885) (-3219.120) (-3228.249) [-3216.413] * [-3210.553] (-3223.741) (-3209.186) (-3222.930) -- 0:07:02
543000 -- (-3216.652) [-3209.001] (-3219.476) (-3210.923) * (-3228.194) [-3208.009] (-3211.998) (-3217.763) -- 0:07:01
544000 -- (-3216.861) (-3217.351) (-3222.714) [-3212.103] * (-3229.612) (-3208.848) (-3209.109) [-3218.841] -- 0:07:00
545000 -- [-3212.280] (-3224.786) (-3219.259) (-3220.555) * (-3218.309) (-3219.035) [-3216.836] (-3214.530) -- 0:06:59
Average standard deviation of split frequencies: 0.007260
546000 -- (-3213.577) (-3214.615) [-3211.142] (-3215.942) * (-3218.592) (-3218.782) (-3209.783) [-3216.896] -- 0:06:59
547000 -- (-3220.477) (-3214.109) [-3215.350] (-3231.825) * (-3228.736) (-3225.903) (-3215.452) [-3213.440] -- 0:06:58
548000 -- (-3206.146) (-3212.163) (-3216.274) [-3215.715] * (-3230.004) [-3220.232] (-3222.419) (-3218.667) -- 0:06:57
549000 -- (-3229.158) (-3224.383) (-3212.833) [-3212.409] * [-3211.160] (-3219.375) (-3226.584) (-3219.489) -- 0:06:56
550000 -- (-3209.815) [-3218.699] (-3219.435) (-3224.572) * (-3216.427) (-3215.708) [-3216.270] (-3215.149) -- 0:06:55
Average standard deviation of split frequencies: 0.007588
551000 -- [-3208.214] (-3209.328) (-3219.112) (-3217.103) * (-3218.749) [-3218.748] (-3213.976) (-3214.724) -- 0:06:54
552000 -- [-3207.968] (-3217.969) (-3230.922) (-3211.428) * (-3216.627) (-3219.744) [-3223.536] (-3222.721) -- 0:06:53
553000 -- (-3211.430) [-3206.629] (-3221.793) (-3209.204) * (-3213.273) (-3220.551) [-3206.996] (-3220.957) -- 0:06:52
554000 -- [-3223.787] (-3216.633) (-3232.372) (-3215.907) * [-3211.025] (-3219.514) (-3213.835) (-3224.966) -- 0:06:51
555000 -- (-3217.558) (-3210.926) (-3215.865) [-3213.953] * (-3212.134) [-3213.995] (-3219.370) (-3223.880) -- 0:06:50
Average standard deviation of split frequencies: 0.008517
556000 -- (-3220.800) (-3205.724) (-3225.507) [-3211.547] * (-3216.578) [-3206.302] (-3209.842) (-3215.754) -- 0:06:49
557000 -- (-3217.329) [-3217.919] (-3214.133) (-3212.219) * (-3212.552) [-3210.606] (-3227.882) (-3213.768) -- 0:06:48
558000 -- [-3211.525] (-3216.722) (-3216.631) (-3214.804) * (-3213.565) [-3215.555] (-3215.803) (-3215.701) -- 0:06:47
559000 -- (-3214.643) [-3207.902] (-3226.006) (-3215.974) * (-3217.282) (-3211.226) (-3227.923) [-3218.419] -- 0:06:47
560000 -- (-3213.860) (-3218.792) [-3213.071] (-3223.722) * (-3223.024) (-3225.662) [-3215.010] (-3213.722) -- 0:06:46
Average standard deviation of split frequencies: 0.008064
561000 -- [-3208.864] (-3227.543) (-3219.677) (-3229.500) * (-3216.066) [-3215.238] (-3214.401) (-3225.642) -- 0:06:45
562000 -- [-3218.593] (-3211.440) (-3211.461) (-3209.916) * (-3221.239) [-3213.761] (-3212.044) (-3219.684) -- 0:06:44
563000 -- [-3208.213] (-3214.516) (-3210.192) (-3209.198) * (-3218.020) (-3214.261) (-3218.092) [-3211.925] -- 0:06:43
564000 -- (-3217.958) (-3216.716) (-3210.393) [-3216.109] * (-3218.015) [-3213.497] (-3218.875) (-3222.779) -- 0:06:41
565000 -- (-3222.900) [-3220.307] (-3219.879) (-3227.669) * [-3216.034] (-3224.993) (-3229.304) (-3206.374) -- 0:06:41
Average standard deviation of split frequencies: 0.007685
566000 -- (-3225.453) (-3209.521) (-3217.943) [-3222.128] * (-3211.120) (-3221.407) (-3217.046) [-3213.724] -- 0:06:40
567000 -- (-3216.718) (-3215.173) (-3206.210) [-3214.805] * [-3214.066] (-3210.910) (-3231.717) (-3212.404) -- 0:06:39
568000 -- [-3225.317] (-3216.095) (-3214.412) (-3220.752) * [-3208.765] (-3207.484) (-3223.145) (-3214.120) -- 0:06:38
569000 -- [-3228.190] (-3219.919) (-3209.175) (-3231.196) * [-3215.837] (-3212.696) (-3218.385) (-3213.908) -- 0:06:37
570000 -- (-3217.993) (-3217.507) (-3227.529) [-3222.139] * [-3213.067] (-3215.223) (-3221.108) (-3216.292) -- 0:06:36
Average standard deviation of split frequencies: 0.007172
571000 -- (-3220.030) (-3209.944) [-3220.823] (-3211.930) * (-3217.030) (-3229.830) (-3215.263) [-3214.164] -- 0:06:35
572000 -- [-3223.104] (-3209.549) (-3213.929) (-3219.729) * [-3221.226] (-3221.117) (-3217.953) (-3209.482) -- 0:06:35
573000 -- (-3215.311) (-3221.736) (-3214.236) [-3223.417] * (-3221.910) (-3213.467) [-3223.279] (-3223.883) -- 0:06:34
574000 -- (-3221.506) (-3229.682) [-3215.832] (-3208.610) * (-3219.839) (-3219.643) (-3228.370) [-3217.968] -- 0:06:33
575000 -- [-3210.921] (-3221.665) (-3216.648) (-3215.542) * [-3218.402] (-3215.025) (-3226.802) (-3215.115) -- 0:06:32
Average standard deviation of split frequencies: 0.007105
576000 -- (-3220.185) (-3232.274) (-3218.848) [-3209.479] * (-3214.761) (-3220.761) [-3210.323] (-3223.920) -- 0:06:31
577000 -- (-3215.303) (-3223.094) (-3212.936) [-3209.389] * [-3218.389] (-3203.503) (-3218.002) (-3219.626) -- 0:06:30
578000 -- (-3216.987) (-3216.511) [-3220.088] (-3215.502) * (-3233.037) (-3204.238) [-3213.711] (-3215.341) -- 0:06:29
579000 -- [-3209.349] (-3217.783) (-3219.639) (-3224.667) * (-3226.592) [-3218.787] (-3214.798) (-3220.155) -- 0:06:28
580000 -- (-3219.499) (-3224.063) (-3209.711) [-3212.746] * (-3218.728) (-3212.395) [-3217.632] (-3207.961) -- 0:06:27
Average standard deviation of split frequencies: 0.007270
581000 -- (-3208.567) (-3218.761) [-3213.212] (-3209.594) * (-3224.187) (-3215.131) [-3210.268] (-3212.448) -- 0:06:26
582000 -- (-3211.526) [-3210.743] (-3216.380) (-3218.130) * (-3229.643) (-3226.923) [-3217.406] (-3213.337) -- 0:06:25
583000 -- (-3215.385) [-3219.892] (-3213.623) (-3215.838) * (-3208.422) [-3215.989] (-3220.028) (-3220.086) -- 0:06:24
584000 -- (-3233.824) [-3212.197] (-3219.569) (-3207.943) * (-3220.821) (-3216.437) (-3213.476) [-3210.403] -- 0:06:23
585000 -- (-3217.236) (-3221.900) (-3225.632) [-3212.023] * (-3216.417) (-3215.867) (-3221.771) [-3212.112] -- 0:06:23
Average standard deviation of split frequencies: 0.007277
586000 -- (-3217.338) [-3220.773] (-3222.358) (-3215.588) * (-3219.749) [-3215.207] (-3214.736) (-3213.673) -- 0:06:22
587000 -- (-3222.247) (-3218.536) [-3212.625] (-3220.412) * (-3210.788) [-3216.635] (-3226.909) (-3214.793) -- 0:06:21
588000 -- (-3208.714) (-3218.801) [-3208.920] (-3216.127) * [-3215.929] (-3218.873) (-3218.596) (-3223.644) -- 0:06:20
589000 -- [-3207.735] (-3217.499) (-3212.326) (-3209.668) * (-3207.844) [-3211.222] (-3227.282) (-3217.731) -- 0:06:19
590000 -- (-3209.077) (-3206.610) [-3209.989] (-3211.053) * (-3211.374) (-3221.914) (-3216.304) [-3209.674] -- 0:06:18
Average standard deviation of split frequencies: 0.008126
591000 -- [-3214.667] (-3220.356) (-3213.262) (-3214.486) * (-3217.821) [-3212.980] (-3228.185) (-3214.166) -- 0:06:17
592000 -- (-3217.298) (-3212.671) (-3218.518) [-3214.841] * (-3213.841) (-3215.439) [-3213.433] (-3216.307) -- 0:06:16
593000 -- [-3214.298] (-3214.126) (-3217.210) (-3222.103) * (-3213.780) (-3210.038) [-3210.167] (-3206.663) -- 0:06:15
594000 -- (-3211.410) [-3212.343] (-3222.901) (-3211.290) * (-3217.951) [-3210.632] (-3213.852) (-3211.779) -- 0:06:14
595000 -- (-3207.978) [-3215.874] (-3214.516) (-3211.933) * (-3212.425) [-3214.292] (-3211.181) (-3212.908) -- 0:06:13
Average standard deviation of split frequencies: 0.007406
596000 -- (-3213.278) (-3218.352) (-3218.639) [-3213.181] * [-3212.291] (-3219.203) (-3216.322) (-3209.885) -- 0:06:12
597000 -- (-3222.355) (-3213.196) (-3216.627) [-3215.951] * [-3218.516] (-3211.921) (-3211.976) (-3218.800) -- 0:06:11
598000 -- (-3215.162) (-3208.434) [-3218.058] (-3218.819) * (-3226.456) (-3211.312) [-3217.067] (-3214.905) -- 0:06:11
599000 -- (-3220.835) (-3220.228) [-3208.033] (-3218.246) * (-3225.941) (-3214.186) (-3211.690) [-3224.239] -- 0:06:10
600000 -- (-3228.672) [-3211.386] (-3224.341) (-3216.463) * (-3214.037) [-3217.141] (-3211.999) (-3216.115) -- 0:06:09
Average standard deviation of split frequencies: 0.007206
601000 -- [-3224.258] (-3220.418) (-3218.504) (-3215.997) * (-3216.109) [-3210.070] (-3223.209) (-3212.113) -- 0:06:08
602000 -- (-3217.577) [-3214.439] (-3220.250) (-3213.776) * (-3216.108) [-3211.935] (-3228.619) (-3221.379) -- 0:06:07
603000 -- [-3218.900] (-3213.577) (-3211.660) (-3213.537) * (-3214.440) [-3208.389] (-3219.149) (-3218.913) -- 0:06:06
604000 -- (-3217.969) [-3206.110] (-3228.778) (-3225.038) * (-3216.179) [-3209.769] (-3222.975) (-3216.344) -- 0:06:05
605000 -- (-3218.303) [-3211.078] (-3207.990) (-3216.392) * (-3214.457) [-3212.945] (-3208.563) (-3223.350) -- 0:06:04
Average standard deviation of split frequencies: 0.006930
606000 -- (-3215.813) [-3216.174] (-3221.205) (-3218.311) * (-3208.974) (-3212.642) (-3214.085) [-3214.221] -- 0:06:03
607000 -- (-3224.703) [-3215.441] (-3219.511) (-3217.409) * (-3213.957) (-3204.977) [-3209.987] (-3217.183) -- 0:06:02
608000 -- [-3215.450] (-3217.738) (-3218.176) (-3223.814) * (-3211.734) (-3205.935) (-3221.587) [-3218.594] -- 0:06:01
609000 -- (-3217.068) [-3211.593] (-3213.682) (-3228.141) * (-3211.744) [-3221.218] (-3221.469) (-3223.539) -- 0:06:00
610000 -- (-3215.748) [-3221.058] (-3222.825) (-3219.640) * [-3215.163] (-3223.131) (-3225.293) (-3216.678) -- 0:05:59
Average standard deviation of split frequencies: 0.006702
611000 -- (-3210.513) (-3223.660) (-3209.394) [-3217.941] * (-3217.177) [-3213.211] (-3225.697) (-3218.533) -- 0:05:59
612000 -- [-3215.182] (-3226.221) (-3216.803) (-3216.204) * (-3226.226) [-3208.119] (-3223.332) (-3219.830) -- 0:05:58
613000 -- (-3213.493) [-3217.129] (-3232.376) (-3210.885) * (-3214.716) [-3212.074] (-3222.908) (-3214.180) -- 0:05:57
614000 -- [-3206.736] (-3220.955) (-3218.339) (-3218.762) * [-3213.444] (-3216.314) (-3208.883) (-3222.541) -- 0:05:56
615000 -- (-3218.706) (-3213.248) (-3217.509) [-3223.954] * (-3214.365) (-3218.248) (-3210.039) [-3216.917] -- 0:05:55
Average standard deviation of split frequencies: 0.006470
616000 -- (-3223.335) (-3210.006) (-3207.978) [-3216.942] * (-3215.217) (-3219.991) [-3223.481] (-3214.363) -- 0:05:54
617000 -- (-3224.541) (-3231.477) (-3209.211) [-3213.507] * (-3225.080) (-3216.973) [-3213.544] (-3213.980) -- 0:05:53
618000 -- (-3212.342) [-3217.219] (-3220.285) (-3229.733) * (-3225.728) (-3222.166) (-3208.849) [-3207.644] -- 0:05:52
619000 -- (-3220.272) [-3212.126] (-3222.156) (-3219.656) * (-3216.748) (-3211.023) [-3206.201] (-3216.578) -- 0:05:51
620000 -- (-3216.697) (-3212.406) [-3220.249] (-3219.637) * (-3222.381) (-3212.607) [-3218.556] (-3225.266) -- 0:05:50
Average standard deviation of split frequencies: 0.006249
621000 -- [-3212.401] (-3213.617) (-3214.552) (-3207.662) * (-3219.954) (-3214.005) [-3207.323] (-3213.929) -- 0:05:49
622000 -- (-3209.252) [-3215.584] (-3226.915) (-3210.976) * [-3214.465] (-3217.356) (-3213.011) (-3217.076) -- 0:05:48
623000 -- [-3209.583] (-3212.848) (-3225.448) (-3211.696) * (-3216.155) (-3220.639) [-3213.435] (-3215.771) -- 0:05:47
624000 -- (-3224.017) [-3213.974] (-3215.941) (-3223.387) * (-3220.681) [-3224.866] (-3226.078) (-3218.172) -- 0:05:47
625000 -- (-3220.338) (-3220.485) [-3211.398] (-3219.719) * (-3215.381) (-3221.546) [-3212.607] (-3220.724) -- 0:05:46
Average standard deviation of split frequencies: 0.005990
626000 -- [-3215.844] (-3213.592) (-3216.642) (-3229.792) * (-3220.401) [-3218.067] (-3215.396) (-3220.726) -- 0:05:45
627000 -- (-3222.063) [-3222.259] (-3204.904) (-3219.138) * (-3214.140) [-3213.544] (-3216.508) (-3224.229) -- 0:05:44
628000 -- (-3228.418) (-3214.425) (-3223.877) [-3214.907] * (-3213.426) (-3214.349) (-3215.333) [-3219.493] -- 0:05:43
629000 -- (-3218.963) [-3210.677] (-3216.822) (-3209.982) * (-3213.087) (-3212.267) [-3211.095] (-3220.264) -- 0:05:42
630000 -- (-3211.123) (-3227.015) (-3229.991) [-3212.410] * (-3219.766) (-3218.025) (-3215.896) [-3225.933] -- 0:05:41
Average standard deviation of split frequencies: 0.005980
631000 -- (-3219.914) [-3218.242] (-3210.302) (-3223.120) * (-3215.533) (-3221.425) [-3209.681] (-3212.110) -- 0:05:40
632000 -- (-3207.607) (-3231.042) (-3214.006) [-3212.431] * (-3223.905) (-3221.162) (-3207.891) [-3213.635] -- 0:05:39
633000 -- (-3221.048) (-3216.124) [-3220.353] (-3218.816) * (-3216.668) [-3212.643] (-3215.121) (-3220.258) -- 0:05:38
634000 -- (-3224.422) (-3214.745) (-3223.091) [-3213.376] * (-3219.544) (-3211.486) (-3216.631) [-3208.507] -- 0:05:37
635000 -- (-3223.176) (-3217.742) [-3226.147] (-3228.031) * (-3212.543) (-3219.959) [-3215.879] (-3211.094) -- 0:05:36
Average standard deviation of split frequencies: 0.006031
636000 -- (-3217.701) [-3214.627] (-3212.725) (-3226.183) * [-3217.765] (-3221.005) (-3227.846) (-3211.804) -- 0:05:35
637000 -- [-3210.828] (-3211.786) (-3218.152) (-3215.576) * (-3216.481) (-3216.420) (-3222.005) [-3211.931] -- 0:05:35
638000 -- [-3213.666] (-3218.625) (-3219.236) (-3213.485) * (-3217.546) [-3213.293] (-3225.403) (-3222.144) -- 0:05:34
639000 -- (-3213.794) (-3209.868) (-3220.825) [-3211.326] * (-3209.514) (-3207.285) [-3221.078] (-3213.381) -- 0:05:33
640000 -- (-3208.822) (-3205.719) (-3222.848) [-3216.484] * (-3219.406) (-3209.893) (-3219.699) [-3211.231] -- 0:05:31
Average standard deviation of split frequencies: 0.006723
641000 -- [-3203.485] (-3213.688) (-3221.804) (-3209.050) * (-3220.279) [-3217.788] (-3220.601) (-3216.625) -- 0:05:30
642000 -- (-3214.566) [-3218.027] (-3217.806) (-3220.032) * (-3220.977) (-3210.224) [-3222.020] (-3215.752) -- 0:05:30
643000 -- (-3209.879) (-3221.154) (-3213.341) [-3205.772] * (-3219.491) (-3210.732) [-3217.327] (-3209.346) -- 0:05:29
644000 -- [-3208.069] (-3218.580) (-3213.962) (-3209.841) * (-3217.494) (-3218.783) (-3210.586) [-3225.351] -- 0:05:28
645000 -- (-3222.850) (-3219.750) [-3214.602] (-3212.416) * (-3220.700) (-3227.078) (-3221.749) [-3208.829] -- 0:05:27
Average standard deviation of split frequencies: 0.006667
646000 -- [-3211.989] (-3215.319) (-3214.064) (-3210.067) * [-3210.730] (-3223.106) (-3235.006) (-3218.979) -- 0:05:26
647000 -- [-3216.713] (-3222.503) (-3213.289) (-3209.230) * (-3220.868) (-3221.570) (-3215.508) [-3214.317] -- 0:05:25
648000 -- (-3210.161) (-3222.706) (-3227.496) [-3215.177] * (-3211.869) (-3216.495) (-3210.592) [-3228.072] -- 0:05:24
649000 -- (-3235.320) (-3222.999) [-3213.661] (-3216.439) * (-3212.548) [-3216.978] (-3214.984) (-3214.932) -- 0:05:23
650000 -- (-3220.308) (-3214.780) [-3215.615] (-3210.214) * [-3215.505] (-3218.733) (-3214.597) (-3220.374) -- 0:05:23
Average standard deviation of split frequencies: 0.006685
651000 -- (-3224.847) [-3212.561] (-3208.903) (-3210.781) * [-3212.552] (-3214.417) (-3228.327) (-3230.665) -- 0:05:22
652000 -- (-3212.125) (-3217.610) (-3209.830) [-3222.143] * (-3221.126) (-3221.492) (-3220.755) [-3224.786] -- 0:05:21
653000 -- (-3215.852) (-3211.193) (-3217.357) [-3205.110] * (-3241.118) [-3218.360] (-3218.548) (-3219.398) -- 0:05:19
654000 -- (-3218.443) [-3213.781] (-3209.181) (-3233.464) * (-3224.691) [-3206.878] (-3212.867) (-3216.523) -- 0:05:19
655000 -- (-3210.951) (-3209.573) (-3215.854) [-3224.644] * [-3208.515] (-3228.292) (-3226.814) (-3210.213) -- 0:05:18
Average standard deviation of split frequencies: 0.006663
656000 -- (-3219.399) (-3219.424) (-3220.154) [-3212.234] * (-3222.187) (-3211.151) (-3210.849) [-3216.074] -- 0:05:17
657000 -- [-3224.245] (-3216.905) (-3208.351) (-3214.547) * (-3217.146) (-3220.284) [-3210.151] (-3213.975) -- 0:05:16
658000 -- (-3220.527) (-3211.842) (-3214.639) [-3213.621] * (-3215.056) [-3212.923] (-3212.315) (-3221.498) -- 0:05:15
659000 -- (-3210.156) (-3216.054) [-3215.724] (-3213.566) * (-3222.684) (-3216.862) [-3210.115] (-3209.349) -- 0:05:14
660000 -- [-3220.381] (-3218.156) (-3215.887) (-3210.237) * (-3226.047) [-3217.099] (-3208.068) (-3207.668) -- 0:05:13
Average standard deviation of split frequencies: 0.007233
661000 -- (-3215.577) (-3225.272) [-3213.586] (-3211.448) * (-3222.366) (-3229.741) [-3210.984] (-3206.524) -- 0:05:12
662000 -- (-3215.028) (-3238.432) [-3215.982] (-3219.386) * [-3211.045] (-3217.857) (-3210.287) (-3217.794) -- 0:05:11
663000 -- (-3211.631) (-3216.098) [-3204.095] (-3222.685) * (-3216.449) (-3221.452) (-3210.859) [-3219.088] -- 0:05:11
664000 -- [-3214.658] (-3218.896) (-3218.090) (-3225.254) * [-3217.864] (-3215.605) (-3221.683) (-3222.958) -- 0:05:10
665000 -- (-3211.723) [-3211.756] (-3227.905) (-3209.598) * (-3229.808) [-3213.595] (-3222.556) (-3217.614) -- 0:05:09
Average standard deviation of split frequencies: 0.007464
666000 -- (-3216.998) [-3212.081] (-3218.434) (-3212.280) * (-3210.342) (-3222.444) (-3229.991) [-3223.952] -- 0:05:07
667000 -- (-3214.276) [-3213.839] (-3219.856) (-3216.266) * [-3221.189] (-3227.029) (-3220.117) (-3210.248) -- 0:05:07
668000 -- (-3213.418) (-3219.911) (-3212.167) [-3212.858] * (-3222.116) [-3218.281] (-3217.171) (-3215.261) -- 0:05:06
669000 -- (-3210.514) (-3217.400) [-3214.497] (-3212.843) * (-3215.717) (-3214.810) (-3222.741) [-3224.373] -- 0:05:05
670000 -- (-3227.521) [-3204.479] (-3215.525) (-3216.685) * (-3212.414) [-3213.606] (-3216.982) (-3205.853) -- 0:05:04
Average standard deviation of split frequencies: 0.007668
671000 -- (-3215.341) [-3224.068] (-3229.385) (-3209.663) * (-3213.412) (-3215.716) [-3221.150] (-3218.046) -- 0:05:03
672000 -- [-3211.256] (-3217.401) (-3222.358) (-3224.834) * (-3220.323) [-3212.012] (-3233.686) (-3213.542) -- 0:05:02
673000 -- (-3214.399) [-3210.099] (-3231.213) (-3213.232) * (-3221.644) (-3213.283) [-3211.507] (-3230.141) -- 0:05:01
674000 -- (-3222.785) (-3215.654) (-3221.687) [-3210.943] * (-3223.233) (-3215.405) [-3207.819] (-3218.273) -- 0:05:00
675000 -- (-3223.658) [-3212.818] (-3213.202) (-3217.658) * (-3215.850) (-3215.106) (-3213.241) [-3221.370] -- 0:04:59
Average standard deviation of split frequencies: 0.008019
676000 -- [-3215.224] (-3224.136) (-3219.949) (-3224.085) * (-3227.223) (-3215.513) (-3221.568) [-3225.319] -- 0:04:59
677000 -- (-3208.952) (-3221.195) (-3219.885) [-3212.554] * (-3216.260) [-3210.652] (-3209.607) (-3222.182) -- 0:04:58
678000 -- (-3218.405) (-3218.000) [-3211.324] (-3218.613) * [-3218.654] (-3211.722) (-3215.158) (-3221.054) -- 0:04:57
679000 -- (-3220.553) [-3214.766] (-3215.284) (-3220.990) * (-3220.268) [-3213.036] (-3213.057) (-3218.104) -- 0:04:56
680000 -- (-3232.587) (-3213.162) (-3215.511) [-3212.956] * (-3217.020) (-3228.802) (-3214.525) [-3214.665] -- 0:04:55
Average standard deviation of split frequencies: 0.008279
681000 -- (-3213.967) (-3215.818) (-3221.333) [-3216.026] * [-3210.734] (-3226.307) (-3223.811) (-3223.660) -- 0:04:54
682000 -- (-3224.689) (-3218.122) (-3225.656) [-3216.915] * [-3209.865] (-3218.583) (-3223.666) (-3213.982) -- 0:04:53
683000 -- [-3207.764] (-3212.325) (-3228.784) (-3221.221) * (-3210.877) (-3223.256) [-3216.104] (-3219.223) -- 0:04:52
684000 -- (-3219.403) (-3208.961) (-3222.645) [-3212.778] * (-3213.239) (-3213.954) [-3218.936] (-3218.648) -- 0:04:51
685000 -- (-3220.261) (-3218.686) (-3222.301) [-3212.577] * [-3215.524] (-3216.226) (-3222.212) (-3217.227) -- 0:04:50
Average standard deviation of split frequencies: 0.007965
686000 -- (-3214.186) [-3219.180] (-3217.249) (-3219.703) * (-3219.316) (-3220.358) [-3208.820] (-3219.891) -- 0:04:49
687000 -- (-3218.021) [-3215.611] (-3217.465) (-3212.967) * (-3213.851) (-3216.184) [-3210.378] (-3213.514) -- 0:04:48
688000 -- (-3213.749) [-3212.971] (-3218.872) (-3217.155) * (-3219.752) (-3211.240) [-3219.054] (-3215.333) -- 0:04:47
689000 -- (-3219.296) [-3207.066] (-3223.853) (-3215.501) * (-3223.849) (-3220.124) (-3215.464) [-3213.947] -- 0:04:47
690000 -- [-3212.405] (-3207.849) (-3209.053) (-3211.992) * (-3225.492) (-3211.920) (-3217.382) [-3207.009] -- 0:04:46
Average standard deviation of split frequencies: 0.008625
691000 -- (-3231.540) (-3211.116) (-3216.236) [-3223.196] * [-3214.041] (-3222.135) (-3214.124) (-3215.353) -- 0:04:45
692000 -- (-3212.306) (-3215.820) [-3211.487] (-3221.280) * (-3223.891) (-3215.904) [-3207.549] (-3220.969) -- 0:04:44
693000 -- [-3218.344] (-3223.148) (-3221.033) (-3208.883) * (-3217.070) (-3213.580) [-3211.010] (-3213.591) -- 0:04:43
694000 -- (-3215.997) (-3227.390) (-3228.694) [-3211.683] * (-3211.612) (-3226.993) (-3216.804) [-3214.689] -- 0:04:42
695000 -- [-3213.005] (-3219.455) (-3228.295) (-3223.765) * (-3216.719) [-3222.771] (-3221.987) (-3214.075) -- 0:04:41
Average standard deviation of split frequencies: 0.008990
696000 -- (-3213.016) (-3220.703) (-3224.749) [-3213.696] * (-3220.185) [-3227.317] (-3218.115) (-3216.180) -- 0:04:40
697000 -- (-3214.152) (-3216.029) (-3220.785) [-3221.646] * (-3216.245) (-3222.548) [-3222.167] (-3221.323) -- 0:04:39
698000 -- (-3221.147) (-3220.086) (-3209.711) [-3211.948] * (-3214.467) [-3210.330] (-3221.345) (-3219.014) -- 0:04:38
699000 -- (-3229.029) (-3228.874) [-3210.349] (-3215.537) * (-3220.342) (-3211.706) [-3209.471] (-3216.113) -- 0:04:37
700000 -- (-3220.841) (-3210.787) (-3218.585) [-3214.918] * (-3219.639) [-3217.210] (-3221.335) (-3220.450) -- 0:04:36
Average standard deviation of split frequencies: 0.008410
701000 -- (-3213.668) [-3208.091] (-3219.624) (-3222.948) * (-3218.377) (-3216.391) [-3215.189] (-3216.126) -- 0:04:35
702000 -- [-3213.544] (-3217.796) (-3211.886) (-3232.120) * (-3214.674) (-3219.438) [-3218.829] (-3216.268) -- 0:04:35
703000 -- [-3207.969] (-3224.714) (-3228.445) (-3225.916) * (-3219.870) (-3215.961) [-3209.616] (-3214.808) -- 0:04:34
704000 -- [-3208.541] (-3218.796) (-3217.660) (-3219.797) * (-3221.215) (-3231.825) (-3217.320) [-3209.209] -- 0:04:33
705000 -- (-3217.864) [-3221.814] (-3210.494) (-3212.731) * (-3217.825) (-3226.902) [-3213.778] (-3208.214) -- 0:04:32
Average standard deviation of split frequencies: 0.008437
706000 -- (-3212.980) (-3220.194) (-3215.203) [-3212.424] * (-3211.548) [-3215.408] (-3220.056) (-3218.055) -- 0:04:31
707000 -- [-3221.693] (-3208.933) (-3212.122) (-3218.565) * (-3215.372) [-3206.008] (-3213.916) (-3218.183) -- 0:04:30
708000 -- (-3216.917) [-3219.327] (-3208.795) (-3227.347) * [-3221.300] (-3221.870) (-3216.046) (-3213.848) -- 0:04:29
709000 -- (-3210.999) (-3216.458) [-3221.359] (-3224.550) * [-3208.263] (-3221.505) (-3213.227) (-3211.986) -- 0:04:28
710000 -- (-3215.074) (-3218.504) (-3222.310) [-3222.965] * (-3217.850) (-3218.231) (-3216.588) [-3217.195] -- 0:04:27
Average standard deviation of split frequencies: 0.008111
711000 -- (-3223.950) [-3225.651] (-3215.699) (-3211.525) * (-3210.506) [-3208.142] (-3221.986) (-3222.198) -- 0:04:26
712000 -- (-3217.309) (-3208.550) [-3213.210] (-3212.443) * (-3217.186) [-3201.671] (-3218.437) (-3219.834) -- 0:04:25
713000 -- (-3215.655) [-3219.684] (-3221.793) (-3218.373) * (-3212.751) (-3214.065) [-3213.283] (-3217.739) -- 0:04:24
714000 -- [-3210.093] (-3226.420) (-3210.579) (-3212.356) * (-3224.860) [-3211.897] (-3216.540) (-3218.657) -- 0:04:23
715000 -- (-3220.873) (-3219.962) (-3223.387) [-3211.790] * (-3214.983) (-3215.052) [-3212.269] (-3219.216) -- 0:04:23
Average standard deviation of split frequencies: 0.007990
716000 -- (-3208.661) (-3222.091) (-3218.301) [-3217.922] * [-3211.717] (-3215.367) (-3217.801) (-3211.437) -- 0:04:22
717000 -- (-3219.545) [-3223.330] (-3207.638) (-3213.098) * (-3221.756) (-3214.181) (-3212.532) [-3206.961] -- 0:04:21
718000 -- (-3214.791) (-3222.519) [-3212.929] (-3208.847) * (-3215.530) [-3221.590] (-3209.573) (-3211.578) -- 0:04:20
719000 -- (-3217.467) (-3210.850) [-3219.400] (-3215.686) * (-3228.663) [-3209.447] (-3211.012) (-3211.754) -- 0:04:19
720000 -- (-3214.304) (-3210.048) [-3219.954] (-3216.628) * (-3216.544) (-3218.462) [-3214.583] (-3217.386) -- 0:04:18
Average standard deviation of split frequencies: 0.007612
721000 -- (-3224.411) (-3215.941) (-3211.544) [-3217.938] * (-3216.190) (-3214.486) [-3224.750] (-3214.517) -- 0:04:17
722000 -- (-3226.989) (-3212.781) [-3218.342] (-3215.274) * (-3218.957) [-3216.271] (-3212.071) (-3214.950) -- 0:04:16
723000 -- (-3205.269) (-3209.900) (-3211.009) [-3216.664] * (-3211.258) (-3217.617) [-3219.936] (-3222.420) -- 0:04:15
724000 -- [-3208.830] (-3217.511) (-3220.799) (-3213.260) * (-3219.539) (-3223.593) (-3212.100) [-3212.989] -- 0:04:14
725000 -- [-3213.339] (-3229.084) (-3213.092) (-3225.390) * [-3209.938] (-3208.794) (-3206.245) (-3213.449) -- 0:04:13
Average standard deviation of split frequencies: 0.007467
726000 -- [-3206.226] (-3218.557) (-3210.987) (-3218.082) * (-3224.318) [-3207.539] (-3223.202) (-3215.821) -- 0:04:12
727000 -- (-3210.308) (-3232.474) (-3208.066) [-3205.713] * (-3227.771) [-3209.420] (-3221.687) (-3224.928) -- 0:04:11
728000 -- [-3217.986] (-3211.286) (-3214.110) (-3219.592) * (-3224.248) [-3213.613] (-3220.615) (-3223.043) -- 0:04:11
729000 -- (-3216.220) (-3221.389) [-3215.937] (-3221.907) * (-3210.122) [-3217.744] (-3208.731) (-3217.197) -- 0:04:10
730000 -- (-3214.456) (-3211.758) (-3228.925) [-3209.298] * (-3224.691) [-3210.465] (-3213.329) (-3218.909) -- 0:04:09
Average standard deviation of split frequencies: 0.007625
731000 -- [-3211.996] (-3220.189) (-3214.116) (-3215.605) * (-3211.023) (-3217.851) [-3209.380] (-3215.061) -- 0:04:08
732000 -- (-3220.996) (-3220.573) [-3212.379] (-3214.743) * (-3216.859) (-3219.553) [-3216.297] (-3217.962) -- 0:04:07
733000 -- (-3223.566) (-3214.162) [-3212.845] (-3214.909) * (-3218.344) (-3231.381) [-3221.066] (-3224.310) -- 0:04:06
734000 -- (-3219.806) [-3213.425] (-3219.132) (-3207.845) * [-3208.729] (-3221.592) (-3217.939) (-3217.887) -- 0:04:05
735000 -- (-3214.449) [-3215.913] (-3213.705) (-3212.460) * [-3206.136] (-3212.308) (-3216.125) (-3218.748) -- 0:04:04
Average standard deviation of split frequencies: 0.007366
736000 -- (-3214.663) (-3225.177) (-3213.207) [-3202.126] * (-3215.234) (-3218.475) [-3219.736] (-3211.843) -- 0:04:03
737000 -- (-3205.761) (-3220.021) (-3221.425) [-3214.629] * (-3212.741) [-3212.689] (-3226.197) (-3212.591) -- 0:04:02
738000 -- (-3215.224) (-3221.584) (-3225.048) [-3220.255] * (-3210.029) (-3220.880) (-3215.217) [-3211.516] -- 0:04:01
739000 -- (-3224.779) (-3220.090) [-3200.560] (-3216.751) * (-3215.815) [-3210.850] (-3219.336) (-3218.174) -- 0:04:00
740000 -- (-3218.419) (-3212.060) (-3215.455) [-3212.479] * (-3222.263) [-3210.941] (-3219.611) (-3217.873) -- 0:03:59
Average standard deviation of split frequencies: 0.007204
741000 -- [-3211.780] (-3223.918) (-3218.203) (-3219.873) * (-3217.559) (-3218.393) [-3207.903] (-3216.391) -- 0:03:59
742000 -- (-3220.490) [-3204.256] (-3218.248) (-3232.882) * (-3215.126) (-3217.574) [-3216.397] (-3216.225) -- 0:03:58
743000 -- (-3215.121) (-3215.553) [-3210.299] (-3214.728) * (-3216.442) (-3217.129) (-3221.838) [-3216.992] -- 0:03:57
744000 -- [-3213.629] (-3218.039) (-3220.564) (-3221.288) * (-3219.824) (-3212.715) [-3219.972] (-3220.738) -- 0:03:56
745000 -- [-3220.397] (-3223.545) (-3210.826) (-3219.878) * [-3216.546] (-3211.869) (-3214.870) (-3209.835) -- 0:03:55
Average standard deviation of split frequencies: 0.007123
746000 -- [-3212.124] (-3216.831) (-3223.377) (-3218.350) * (-3215.968) (-3223.436) (-3220.593) [-3219.553] -- 0:03:54
747000 -- (-3212.841) (-3214.213) (-3224.589) [-3207.948] * (-3218.217) [-3219.381] (-3216.415) (-3223.201) -- 0:03:53
748000 -- (-3212.210) (-3213.153) [-3219.513] (-3209.589) * (-3210.896) [-3217.153] (-3227.989) (-3210.416) -- 0:03:52
749000 -- [-3215.736] (-3215.446) (-3223.714) (-3229.400) * [-3216.649] (-3207.876) (-3214.729) (-3212.802) -- 0:03:51
750000 -- (-3208.033) [-3220.951] (-3219.083) (-3237.363) * (-3214.528) [-3212.502] (-3216.750) (-3215.150) -- 0:03:50
Average standard deviation of split frequencies: 0.007564
751000 -- (-3213.108) (-3214.723) [-3215.158] (-3217.916) * [-3219.887] (-3215.845) (-3215.782) (-3212.633) -- 0:03:49
752000 -- [-3226.583] (-3215.127) (-3219.838) (-3211.608) * (-3227.502) (-3214.889) (-3215.198) [-3220.068] -- 0:03:48
753000 -- [-3219.895] (-3211.312) (-3213.118) (-3219.080) * [-3220.710] (-3218.441) (-3234.369) (-3224.897) -- 0:03:47
754000 -- (-3224.490) (-3217.955) (-3207.566) [-3225.702] * (-3219.697) (-3217.969) (-3224.298) [-3210.899] -- 0:03:47
755000 -- (-3222.244) [-3216.053] (-3208.050) (-3230.477) * (-3234.328) (-3229.084) (-3211.172) [-3212.471] -- 0:03:46
Average standard deviation of split frequencies: 0.007284
756000 -- [-3214.003] (-3216.785) (-3229.284) (-3221.939) * (-3233.114) [-3214.002] (-3215.671) (-3214.478) -- 0:03:45
757000 -- (-3219.464) (-3216.460) (-3211.797) [-3213.073] * [-3213.315] (-3216.663) (-3214.380) (-3215.201) -- 0:03:44
758000 -- [-3224.690] (-3212.998) (-3212.573) (-3205.867) * [-3212.586] (-3212.005) (-3227.332) (-3214.964) -- 0:03:43
759000 -- [-3218.407] (-3235.007) (-3220.419) (-3212.357) * (-3221.520) [-3210.132] (-3220.545) (-3208.665) -- 0:03:42
760000 -- (-3238.593) (-3215.940) (-3213.532) [-3205.501] * (-3229.739) [-3207.623] (-3223.236) (-3210.136) -- 0:03:41
Average standard deviation of split frequencies: 0.007268
761000 -- (-3224.424) [-3215.560] (-3215.368) (-3215.526) * (-3214.121) [-3218.381] (-3221.576) (-3207.912) -- 0:03:40
762000 -- (-3213.895) (-3219.442) [-3211.182] (-3208.163) * (-3212.100) [-3220.671] (-3222.765) (-3211.505) -- 0:03:39
763000 -- [-3212.079] (-3221.241) (-3226.188) (-3213.585) * (-3221.656) (-3219.153) (-3225.703) [-3209.972] -- 0:03:38
764000 -- (-3217.531) (-3217.527) [-3220.389] (-3214.228) * (-3216.712) [-3216.547] (-3233.297) (-3214.113) -- 0:03:38
765000 -- (-3213.106) [-3212.583] (-3215.130) (-3218.712) * (-3224.350) [-3212.438] (-3221.869) (-3210.958) -- 0:03:37
Average standard deviation of split frequencies: 0.007133
766000 -- (-3216.389) [-3205.273] (-3219.980) (-3220.824) * (-3220.567) (-3211.337) [-3221.733] (-3219.468) -- 0:03:35
767000 -- [-3219.949] (-3212.172) (-3220.635) (-3222.159) * (-3218.016) (-3210.576) (-3215.817) [-3220.693] -- 0:03:35
768000 -- (-3221.789) (-3209.540) (-3218.767) [-3215.542] * (-3214.174) (-3218.866) (-3214.495) [-3217.177] -- 0:03:34
769000 -- (-3219.791) [-3217.063] (-3217.344) (-3224.913) * [-3216.727] (-3228.260) (-3207.833) (-3212.293) -- 0:03:33
770000 -- (-3217.488) [-3205.823] (-3212.421) (-3221.649) * (-3212.179) [-3210.073] (-3215.716) (-3223.722) -- 0:03:32
Average standard deviation of split frequencies: 0.007368
771000 -- (-3216.238) (-3215.656) [-3219.480] (-3217.279) * (-3214.122) (-3213.911) [-3219.856] (-3229.774) -- 0:03:31
772000 -- [-3216.012] (-3226.005) (-3222.211) (-3210.368) * (-3213.149) (-3216.040) (-3212.817) [-3210.543] -- 0:03:30
773000 -- (-3231.361) (-3221.980) (-3213.616) [-3213.716] * [-3217.063] (-3214.947) (-3223.651) (-3238.565) -- 0:03:29
774000 -- [-3206.460] (-3203.187) (-3220.400) (-3212.341) * (-3216.944) [-3225.177] (-3213.319) (-3227.862) -- 0:03:28
775000 -- (-3211.720) [-3208.547] (-3210.653) (-3211.760) * (-3218.565) (-3228.958) (-3219.320) [-3212.717] -- 0:03:27
Average standard deviation of split frequencies: 0.007262
776000 -- [-3218.345] (-3217.314) (-3227.810) (-3212.499) * (-3225.357) [-3216.959] (-3204.875) (-3224.091) -- 0:03:26
777000 -- (-3218.470) (-3221.975) (-3213.681) [-3221.577] * (-3212.881) (-3219.241) (-3218.759) [-3217.863] -- 0:03:26
778000 -- (-3216.191) (-3212.821) [-3218.918] (-3218.564) * (-3219.248) (-3216.700) [-3221.600] (-3218.595) -- 0:03:25
779000 -- (-3211.682) (-3206.610) (-3212.747) [-3202.367] * (-3211.544) (-3221.638) [-3210.019] (-3217.194) -- 0:03:24
780000 -- [-3211.182] (-3219.987) (-3230.160) (-3219.406) * [-3216.667] (-3216.945) (-3213.064) (-3236.470) -- 0:03:23
Average standard deviation of split frequencies: 0.007987
781000 -- [-3210.635] (-3211.640) (-3216.339) (-3212.234) * (-3213.841) (-3209.833) [-3229.097] (-3215.670) -- 0:03:22
782000 -- (-3214.706) (-3227.434) [-3217.795] (-3222.313) * (-3221.357) (-3214.902) [-3205.408] (-3220.071) -- 0:03:21
783000 -- (-3213.109) [-3205.080] (-3241.165) (-3216.900) * (-3216.795) [-3218.101] (-3216.756) (-3211.222) -- 0:03:20
784000 -- [-3216.227] (-3219.221) (-3210.975) (-3207.587) * (-3218.350) [-3218.642] (-3219.792) (-3213.313) -- 0:03:19
785000 -- [-3210.205] (-3232.656) (-3211.963) (-3221.332) * (-3217.856) (-3216.945) [-3215.299] (-3212.604) -- 0:03:18
Average standard deviation of split frequencies: 0.008097
786000 -- (-3215.199) (-3221.993) (-3216.852) [-3215.127] * (-3218.570) (-3220.880) (-3222.323) [-3215.376] -- 0:03:17
787000 -- (-3217.315) (-3213.668) [-3215.795] (-3224.717) * (-3217.373) (-3215.492) [-3214.547] (-3214.468) -- 0:03:16
788000 -- (-3215.342) [-3204.634] (-3216.971) (-3222.320) * (-3212.204) (-3222.628) [-3216.623] (-3220.819) -- 0:03:15
789000 -- [-3211.925] (-3216.811) (-3212.968) (-3228.477) * [-3223.613] (-3208.093) (-3218.758) (-3222.270) -- 0:03:14
790000 -- (-3221.907) (-3212.387) [-3217.139] (-3212.668) * [-3217.463] (-3227.354) (-3206.899) (-3213.023) -- 0:03:14
Average standard deviation of split frequencies: 0.008455
791000 -- (-3223.022) (-3215.389) (-3219.546) [-3213.907] * (-3208.304) (-3230.259) (-3221.343) [-3207.873] -- 0:03:13
792000 -- (-3218.176) (-3218.294) [-3210.198] (-3218.120) * (-3210.462) (-3217.560) (-3211.395) [-3224.169] -- 0:03:12
793000 -- (-3217.470) (-3217.402) [-3213.415] (-3220.755) * (-3224.769) [-3220.740] (-3216.925) (-3211.147) -- 0:03:11
794000 -- (-3217.134) (-3219.049) (-3208.625) [-3212.871] * (-3222.489) (-3213.404) (-3214.120) [-3219.678] -- 0:03:10
795000 -- (-3211.487) (-3213.177) [-3215.849] (-3231.087) * (-3215.446) [-3213.296] (-3221.588) (-3234.237) -- 0:03:09
Average standard deviation of split frequencies: 0.008453
796000 -- (-3210.473) (-3220.842) (-3211.522) [-3223.318] * (-3231.318) (-3219.919) [-3213.242] (-3222.242) -- 0:03:08
797000 -- (-3214.807) (-3217.278) (-3211.683) [-3214.306] * (-3206.181) [-3215.809] (-3206.726) (-3215.327) -- 0:03:07
798000 -- [-3216.980] (-3208.114) (-3225.574) (-3228.671) * (-3219.818) (-3225.894) [-3213.847] (-3218.723) -- 0:03:06
799000 -- (-3231.475) (-3222.414) [-3232.779] (-3213.400) * (-3210.080) (-3215.039) (-3200.534) [-3212.105] -- 0:03:05
800000 -- (-3226.587) (-3221.241) [-3216.493] (-3213.267) * (-3212.399) (-3211.518) (-3218.816) [-3208.784] -- 0:03:04
Average standard deviation of split frequencies: 0.008591
801000 -- [-3210.403] (-3214.502) (-3223.948) (-3211.063) * [-3222.474] (-3213.137) (-3226.457) (-3226.722) -- 0:03:03
802000 -- (-3222.875) (-3216.943) (-3213.217) [-3215.197] * (-3212.079) (-3213.062) (-3222.063) [-3218.864] -- 0:03:02
803000 -- (-3214.012) [-3212.960] (-3225.967) (-3212.151) * (-3215.741) (-3218.907) [-3219.387] (-3213.028) -- 0:03:02
804000 -- (-3223.838) [-3212.644] (-3221.185) (-3214.786) * [-3210.553] (-3211.169) (-3221.789) (-3223.557) -- 0:03:01
805000 -- [-3222.135] (-3219.948) (-3211.268) (-3223.800) * [-3223.137] (-3220.710) (-3212.218) (-3234.429) -- 0:03:00
Average standard deviation of split frequencies: 0.008773
806000 -- [-3215.760] (-3219.799) (-3208.705) (-3230.835) * (-3219.551) (-3205.612) [-3210.287] (-3216.437) -- 0:02:59
807000 -- (-3205.947) (-3221.879) (-3221.384) [-3223.977] * (-3218.027) (-3210.833) (-3220.582) [-3215.895] -- 0:02:58
808000 -- [-3213.425] (-3218.933) (-3216.136) (-3220.349) * (-3213.145) (-3212.953) [-3205.145] (-3215.718) -- 0:02:57
809000 -- (-3224.985) [-3212.585] (-3214.301) (-3215.325) * [-3218.543] (-3213.692) (-3217.074) (-3216.694) -- 0:02:56
810000 -- (-3221.054) (-3219.607) [-3216.828] (-3218.763) * (-3217.395) (-3221.481) (-3214.958) [-3221.520] -- 0:02:55
Average standard deviation of split frequencies: 0.008538
811000 -- (-3218.554) (-3215.488) (-3216.759) [-3214.667] * (-3217.531) [-3214.530] (-3217.091) (-3220.536) -- 0:02:54
812000 -- (-3212.414) (-3227.311) (-3216.900) [-3212.810] * (-3211.014) [-3223.080] (-3216.392) (-3231.891) -- 0:02:53
813000 -- [-3220.093] (-3216.897) (-3211.918) (-3223.962) * [-3203.542] (-3214.892) (-3219.400) (-3223.691) -- 0:02:52
814000 -- (-3203.451) (-3219.686) [-3214.753] (-3226.666) * (-3214.114) [-3215.884] (-3216.776) (-3222.180) -- 0:02:51
815000 -- (-3216.674) (-3217.539) [-3209.898] (-3213.239) * (-3214.087) [-3210.434] (-3212.265) (-3208.982) -- 0:02:50
Average standard deviation of split frequencies: 0.008744
816000 -- [-3211.095] (-3212.407) (-3225.917) (-3212.203) * (-3211.537) (-3212.228) (-3219.165) [-3205.036] -- 0:02:50
817000 -- [-3216.843] (-3212.616) (-3225.081) (-3213.667) * (-3207.958) (-3222.243) (-3219.333) [-3213.881] -- 0:02:49
818000 -- (-3234.512) (-3212.454) (-3224.622) [-3223.715] * (-3212.345) [-3208.043] (-3218.453) (-3210.017) -- 0:02:48
819000 -- (-3217.347) (-3215.194) (-3218.628) [-3204.925] * (-3217.356) (-3222.415) [-3214.269] (-3209.416) -- 0:02:47
820000 -- (-3224.101) [-3206.887] (-3229.454) (-3224.211) * (-3214.066) [-3212.355] (-3219.910) (-3215.790) -- 0:02:46
Average standard deviation of split frequencies: 0.008747
821000 -- (-3220.968) (-3217.875) [-3220.848] (-3215.023) * (-3218.559) (-3213.296) [-3213.325] (-3223.232) -- 0:02:45
822000 -- [-3213.305] (-3220.747) (-3224.338) (-3217.076) * (-3223.100) (-3212.955) [-3213.952] (-3217.302) -- 0:02:44
823000 -- (-3214.007) [-3219.595] (-3220.003) (-3213.082) * (-3224.007) [-3215.568] (-3230.970) (-3221.083) -- 0:02:43
824000 -- [-3219.004] (-3211.186) (-3227.456) (-3217.913) * (-3225.532) (-3215.337) [-3217.000] (-3224.278) -- 0:02:42
825000 -- (-3217.725) [-3210.982] (-3209.304) (-3221.465) * (-3216.453) [-3210.382] (-3211.734) (-3227.283) -- 0:02:41
Average standard deviation of split frequencies: 0.008457
826000 -- (-3208.380) (-3222.985) [-3209.849] (-3218.606) * (-3212.049) [-3213.519] (-3210.377) (-3214.594) -- 0:02:40
827000 -- (-3219.308) (-3219.103) (-3212.439) [-3214.444] * (-3208.299) (-3220.442) [-3210.157] (-3219.498) -- 0:02:39
828000 -- [-3208.054] (-3219.530) (-3218.616) (-3211.404) * (-3215.099) [-3211.052] (-3210.236) (-3220.025) -- 0:02:38
829000 -- [-3206.951] (-3222.896) (-3216.599) (-3207.974) * (-3224.698) (-3220.721) (-3219.266) [-3209.922] -- 0:02:38
830000 -- (-3216.993) (-3213.204) [-3207.125] (-3214.850) * (-3211.628) [-3212.432] (-3213.350) (-3216.634) -- 0:02:37
Average standard deviation of split frequencies: 0.009132
831000 -- (-3221.127) (-3215.312) (-3228.254) [-3214.755] * (-3217.648) [-3216.509] (-3219.274) (-3222.094) -- 0:02:36
832000 -- (-3223.938) (-3220.839) [-3218.867] (-3212.481) * (-3218.610) (-3217.277) (-3206.581) [-3217.713] -- 0:02:35
833000 -- [-3209.616] (-3210.246) (-3222.899) (-3206.953) * (-3212.166) (-3228.293) (-3204.324) [-3206.806] -- 0:02:34
834000 -- (-3208.210) [-3213.355] (-3217.284) (-3221.005) * (-3227.332) [-3216.743] (-3217.665) (-3208.107) -- 0:02:33
835000 -- (-3224.080) [-3210.689] (-3219.079) (-3217.128) * (-3215.770) [-3215.278] (-3215.832) (-3227.868) -- 0:02:32
Average standard deviation of split frequencies: 0.008817
836000 -- (-3213.375) (-3208.454) (-3235.647) [-3209.141] * (-3215.322) (-3216.533) (-3218.492) [-3214.336] -- 0:02:31
837000 -- [-3211.810] (-3212.667) (-3222.233) (-3222.104) * [-3218.673] (-3217.171) (-3213.616) (-3216.159) -- 0:02:30
838000 -- [-3219.685] (-3214.163) (-3215.968) (-3214.102) * (-3226.297) (-3221.469) (-3225.773) [-3218.415] -- 0:02:29
839000 -- (-3216.551) [-3209.712] (-3227.919) (-3219.608) * (-3227.908) (-3213.283) (-3224.212) [-3212.884] -- 0:02:28
840000 -- [-3215.452] (-3214.348) (-3218.640) (-3233.054) * [-3217.067] (-3225.372) (-3214.889) (-3206.612) -- 0:02:27
Average standard deviation of split frequencies: 0.009252
841000 -- [-3210.671] (-3218.356) (-3215.994) (-3217.496) * (-3215.185) (-3217.661) [-3213.215] (-3218.949) -- 0:02:26
842000 -- (-3225.047) [-3212.165] (-3225.847) (-3211.941) * (-3210.690) (-3224.446) [-3209.851] (-3215.496) -- 0:02:25
843000 -- (-3209.160) (-3216.429) [-3221.020] (-3221.623) * [-3215.263] (-3221.148) (-3221.855) (-3209.190) -- 0:02:25
844000 -- (-3209.776) (-3218.179) (-3217.061) [-3212.100] * [-3212.558] (-3224.558) (-3221.215) (-3215.396) -- 0:02:24
845000 -- (-3216.335) (-3213.489) [-3216.996] (-3213.875) * (-3212.532) (-3213.465) [-3216.135] (-3222.894) -- 0:02:23
Average standard deviation of split frequencies: 0.009194
846000 -- [-3215.529] (-3206.045) (-3222.053) (-3222.013) * (-3216.795) (-3213.232) (-3226.333) [-3214.240] -- 0:02:22
847000 -- (-3215.949) [-3210.648] (-3220.180) (-3227.450) * (-3214.955) (-3222.036) (-3225.636) [-3215.067] -- 0:02:21
848000 -- [-3217.510] (-3210.313) (-3220.809) (-3220.819) * (-3217.498) (-3213.902) [-3215.672] (-3220.992) -- 0:02:20
849000 -- (-3213.914) [-3208.566] (-3220.283) (-3220.785) * (-3215.247) (-3212.420) [-3221.518] (-3220.687) -- 0:02:19
850000 -- (-3214.731) (-3223.734) (-3221.107) [-3217.879] * (-3217.441) (-3211.761) (-3228.873) [-3214.047] -- 0:02:18
Average standard deviation of split frequencies: 0.009295
851000 -- (-3214.369) (-3226.224) [-3214.044] (-3218.395) * (-3206.727) [-3208.430] (-3228.873) (-3215.674) -- 0:02:17
852000 -- (-3211.826) (-3218.035) [-3217.093] (-3221.690) * (-3226.195) (-3215.957) (-3224.957) [-3214.227] -- 0:02:16
853000 -- (-3212.495) [-3215.289] (-3215.237) (-3213.236) * (-3216.951) (-3223.410) [-3218.660] (-3229.856) -- 0:02:15
854000 -- (-3218.175) [-3211.850] (-3207.751) (-3222.087) * (-3206.519) (-3225.947) (-3220.553) [-3217.732] -- 0:02:14
855000 -- (-3213.110) (-3211.891) [-3213.282] (-3228.714) * [-3211.138] (-3221.558) (-3218.561) (-3221.903) -- 0:02:13
Average standard deviation of split frequencies: 0.009437
856000 -- [-3212.883] (-3214.589) (-3211.959) (-3220.832) * (-3227.685) (-3215.613) [-3212.865] (-3213.492) -- 0:02:13
857000 -- (-3210.736) (-3216.390) [-3214.370] (-3209.383) * (-3217.704) [-3204.612] (-3210.715) (-3210.629) -- 0:02:12
858000 -- (-3227.811) [-3217.495] (-3213.209) (-3209.572) * (-3217.383) (-3216.775) (-3226.580) [-3211.565] -- 0:02:11
859000 -- [-3208.525] (-3214.564) (-3218.006) (-3216.510) * (-3214.402) (-3217.971) (-3215.132) [-3214.598] -- 0:02:10
860000 -- [-3219.505] (-3231.945) (-3216.893) (-3208.182) * (-3231.154) (-3213.205) [-3211.704] (-3230.287) -- 0:02:09
Average standard deviation of split frequencies: 0.009037
861000 -- (-3205.716) [-3220.551] (-3215.119) (-3211.042) * (-3222.429) [-3217.499] (-3222.595) (-3226.454) -- 0:02:08
862000 -- (-3215.171) [-3223.132] (-3213.542) (-3213.517) * (-3213.180) [-3219.646] (-3226.023) (-3211.310) -- 0:02:07
863000 -- (-3217.982) (-3214.011) (-3216.681) [-3209.526] * [-3213.691] (-3217.404) (-3215.890) (-3222.755) -- 0:02:06
864000 -- (-3219.836) (-3213.635) (-3212.820) [-3215.005] * (-3221.866) (-3223.031) (-3207.245) [-3217.800] -- 0:02:05
865000 -- (-3218.738) (-3216.114) [-3223.872] (-3215.626) * (-3217.450) [-3210.496] (-3214.423) (-3218.155) -- 0:02:04
Average standard deviation of split frequencies: 0.009081
866000 -- [-3221.066] (-3215.155) (-3208.316) (-3219.317) * (-3225.194) [-3209.523] (-3213.467) (-3215.502) -- 0:02:03
867000 -- [-3220.251] (-3216.776) (-3208.754) (-3208.475) * (-3222.655) (-3214.024) (-3213.301) [-3214.130] -- 0:02:02
868000 -- (-3217.565) (-3220.144) (-3224.141) [-3215.127] * (-3209.780) [-3219.484] (-3228.124) (-3214.859) -- 0:02:01
869000 -- (-3217.058) (-3218.272) [-3210.631] (-3222.260) * (-3223.824) (-3217.443) [-3228.320] (-3227.845) -- 0:02:01
870000 -- (-3221.028) (-3210.624) [-3205.070] (-3213.150) * [-3213.821] (-3216.136) (-3217.483) (-3213.621) -- 0:02:00
Average standard deviation of split frequencies: 0.009180
871000 -- (-3209.866) [-3213.487] (-3216.440) (-3215.396) * [-3220.264] (-3220.936) (-3215.466) (-3221.836) -- 0:01:59
872000 -- [-3210.337] (-3217.227) (-3217.812) (-3212.892) * [-3216.792] (-3211.397) (-3222.909) (-3218.824) -- 0:01:58
873000 -- [-3220.641] (-3218.926) (-3225.099) (-3219.345) * (-3210.056) [-3206.794] (-3214.929) (-3209.547) -- 0:01:57
874000 -- (-3213.835) (-3226.433) (-3219.318) [-3220.077] * (-3215.017) (-3217.654) (-3217.252) [-3216.363] -- 0:01:56
875000 -- (-3210.981) [-3213.295] (-3223.344) (-3221.906) * (-3214.991) (-3209.987) [-3220.156] (-3226.635) -- 0:01:55
Average standard deviation of split frequencies: 0.009050
876000 -- [-3210.566] (-3223.475) (-3213.896) (-3203.990) * (-3225.414) (-3225.952) [-3208.130] (-3216.015) -- 0:01:54
877000 -- (-3218.622) (-3226.452) [-3212.654] (-3208.112) * (-3218.649) [-3215.352] (-3223.479) (-3213.624) -- 0:01:53
878000 -- (-3211.008) (-3210.288) (-3217.343) [-3213.962] * [-3215.344] (-3214.506) (-3209.619) (-3224.060) -- 0:01:52
879000 -- (-3208.383) (-3220.849) [-3219.890] (-3210.440) * (-3240.674) (-3223.637) (-3218.640) [-3212.727] -- 0:01:51
880000 -- [-3212.906] (-3226.037) (-3218.705) (-3212.326) * (-3215.019) [-3213.501] (-3224.708) (-3213.835) -- 0:01:51
Average standard deviation of split frequencies: 0.009027
881000 -- (-3229.481) (-3218.625) [-3220.583] (-3211.597) * (-3218.036) (-3209.962) (-3235.034) [-3215.014] -- 0:01:50
882000 -- (-3215.144) (-3212.367) (-3213.966) [-3208.968] * (-3221.393) [-3216.608] (-3211.924) (-3212.015) -- 0:01:49
883000 -- (-3211.900) [-3210.596] (-3218.711) (-3213.328) * (-3233.916) (-3213.705) [-3210.815] (-3212.132) -- 0:01:48
884000 -- (-3220.917) (-3222.021) [-3229.676] (-3206.034) * (-3208.097) (-3217.790) [-3217.972] (-3221.195) -- 0:01:47
885000 -- (-3220.540) (-3214.461) [-3212.493] (-3220.800) * (-3214.029) (-3214.160) [-3219.364] (-3218.224) -- 0:01:46
Average standard deviation of split frequencies: 0.009408
886000 -- (-3219.556) (-3218.568) [-3211.584] (-3211.960) * (-3217.957) [-3219.255] (-3221.398) (-3218.596) -- 0:01:45
887000 -- (-3219.957) (-3213.160) (-3218.939) [-3216.608] * (-3215.490) (-3212.820) (-3218.144) [-3209.008] -- 0:01:44
888000 -- (-3223.572) (-3223.700) (-3217.450) [-3221.040] * [-3229.370] (-3217.916) (-3227.208) (-3215.913) -- 0:01:43
889000 -- [-3223.583] (-3213.157) (-3214.492) (-3210.952) * (-3217.678) [-3217.693] (-3217.172) (-3212.439) -- 0:01:42
890000 -- (-3222.139) (-3210.648) [-3208.980] (-3207.715) * (-3209.784) (-3219.016) [-3213.549] (-3220.051) -- 0:01:41
Average standard deviation of split frequencies: 0.009551
891000 -- (-3222.123) [-3211.841] (-3209.471) (-3226.304) * (-3213.889) (-3223.641) (-3213.902) [-3210.180] -- 0:01:40
892000 -- (-3226.166) [-3206.752] (-3206.477) (-3212.403) * [-3217.607] (-3211.999) (-3211.676) (-3216.283) -- 0:01:39
893000 -- (-3222.631) (-3221.035) [-3213.380] (-3212.454) * (-3213.287) [-3212.338] (-3219.339) (-3215.149) -- 0:01:38
894000 -- (-3211.565) [-3215.986] (-3210.119) (-3222.425) * (-3225.240) [-3221.442] (-3219.906) (-3215.321) -- 0:01:38
895000 -- (-3219.293) (-3219.793) [-3211.603] (-3216.469) * (-3218.813) [-3214.417] (-3216.269) (-3216.631) -- 0:01:37
Average standard deviation of split frequencies: 0.009470
896000 -- (-3223.026) [-3215.176] (-3215.193) (-3214.508) * (-3211.123) [-3220.136] (-3217.529) (-3221.061) -- 0:01:36
897000 -- (-3211.962) [-3210.538] (-3208.218) (-3225.887) * [-3208.620] (-3208.979) (-3218.999) (-3209.733) -- 0:01:35
898000 -- [-3222.405] (-3209.593) (-3211.104) (-3223.350) * (-3215.528) [-3211.120] (-3215.007) (-3217.853) -- 0:01:34
899000 -- (-3211.792) [-3212.987] (-3211.871) (-3213.383) * (-3212.421) [-3200.076] (-3222.847) (-3210.238) -- 0:01:33
900000 -- (-3214.782) (-3212.982) (-3217.657) [-3217.496] * (-3205.973) (-3219.292) (-3228.409) [-3220.736] -- 0:01:32
Average standard deviation of split frequencies: 0.009492
901000 -- (-3219.572) (-3221.463) [-3216.766] (-3214.146) * [-3202.001] (-3217.380) (-3226.472) (-3213.161) -- 0:01:31
902000 -- (-3216.870) (-3213.554) (-3221.623) [-3222.759] * (-3217.004) (-3216.573) [-3211.322] (-3208.239) -- 0:01:30
903000 -- (-3217.048) (-3222.315) (-3212.189) [-3216.922] * (-3215.012) (-3232.369) (-3218.739) [-3214.541] -- 0:01:29
904000 -- (-3220.386) [-3219.398] (-3209.691) (-3210.658) * (-3211.927) [-3214.710] (-3214.779) (-3223.858) -- 0:01:28
905000 -- (-3223.908) (-3222.468) (-3221.385) [-3205.457] * [-3213.168] (-3207.400) (-3216.535) (-3230.891) -- 0:01:27
Average standard deviation of split frequencies: 0.009176
906000 -- (-3223.233) [-3209.453] (-3227.866) (-3218.703) * (-3214.833) [-3218.784] (-3217.175) (-3222.008) -- 0:01:26
907000 -- (-3214.769) [-3215.020] (-3232.103) (-3210.684) * [-3213.924] (-3216.441) (-3221.852) (-3222.601) -- 0:01:26
908000 -- (-3225.154) (-3219.045) [-3223.034] (-3214.814) * [-3210.810] (-3220.246) (-3214.579) (-3214.777) -- 0:01:25
909000 -- (-3220.097) (-3223.964) (-3206.427) [-3214.010] * (-3219.759) (-3212.806) (-3215.671) [-3217.280] -- 0:01:24
910000 -- (-3217.557) (-3229.018) [-3209.033] (-3214.778) * (-3222.431) [-3214.532] (-3215.138) (-3231.081) -- 0:01:23
Average standard deviation of split frequencies: 0.008800
911000 -- (-3223.090) [-3215.523] (-3207.290) (-3207.620) * (-3216.483) [-3213.002] (-3212.545) (-3212.046) -- 0:01:22
912000 -- [-3211.373] (-3224.624) (-3219.046) (-3216.211) * (-3222.921) [-3216.758] (-3221.350) (-3228.459) -- 0:01:21
913000 -- (-3217.912) (-3227.502) [-3210.118] (-3209.322) * (-3223.553) (-3211.312) (-3220.025) [-3210.178] -- 0:01:20
914000 -- (-3225.720) (-3216.407) (-3218.998) [-3204.639] * (-3208.414) (-3216.453) [-3210.275] (-3219.222) -- 0:01:19
915000 -- (-3223.028) (-3213.703) (-3222.866) [-3214.899] * (-3220.751) [-3209.626] (-3231.128) (-3214.823) -- 0:01:18
Average standard deviation of split frequencies: 0.009076
916000 -- (-3222.429) (-3222.698) [-3206.305] (-3212.849) * (-3213.215) [-3216.281] (-3216.184) (-3224.530) -- 0:01:17
917000 -- (-3215.800) (-3217.406) (-3210.736) [-3208.937] * (-3214.135) [-3207.791] (-3226.862) (-3216.133) -- 0:01:16
918000 -- (-3221.958) (-3217.634) (-3210.617) [-3214.010] * (-3218.638) (-3211.453) [-3202.676] (-3214.907) -- 0:01:15
919000 -- (-3212.614) [-3211.647] (-3216.247) (-3211.103) * (-3205.476) [-3213.444] (-3211.338) (-3212.647) -- 0:01:14
920000 -- (-3223.258) (-3220.484) (-3208.857) [-3219.802] * [-3207.941] (-3214.755) (-3219.443) (-3213.589) -- 0:01:14
Average standard deviation of split frequencies: 0.009216
921000 -- (-3225.297) (-3215.240) [-3210.409] (-3217.275) * (-3210.760) (-3216.382) (-3222.100) [-3212.485] -- 0:01:12
922000 -- (-3219.727) (-3209.413) (-3206.857) [-3213.251] * (-3202.311) (-3222.105) [-3203.413] (-3207.563) -- 0:01:12
923000 -- [-3213.093] (-3214.386) (-3211.517) (-3211.121) * [-3220.924] (-3210.959) (-3210.613) (-3210.578) -- 0:01:11
924000 -- (-3218.422) [-3222.406] (-3212.836) (-3206.745) * (-3221.020) [-3219.378] (-3220.338) (-3217.559) -- 0:01:10
925000 -- (-3208.824) (-3210.884) [-3226.570] (-3203.580) * (-3226.397) [-3204.967] (-3216.674) (-3222.859) -- 0:01:09
Average standard deviation of split frequencies: 0.009117
926000 -- (-3219.913) (-3221.445) [-3217.715] (-3221.049) * (-3221.245) (-3217.518) (-3224.484) [-3217.381] -- 0:01:08
927000 -- [-3210.357] (-3215.563) (-3213.405) (-3210.104) * [-3214.835] (-3210.454) (-3213.759) (-3221.972) -- 0:01:07
928000 -- (-3210.528) [-3217.922] (-3208.817) (-3206.250) * (-3216.999) (-3231.212) [-3208.821] (-3229.157) -- 0:01:06
929000 -- (-3218.338) (-3208.191) [-3223.356] (-3213.709) * [-3208.962] (-3220.443) (-3219.002) (-3213.743) -- 0:01:05
930000 -- (-3232.749) (-3214.327) (-3213.248) [-3211.045] * (-3213.150) (-3212.497) [-3211.752] (-3214.739) -- 0:01:04
Average standard deviation of split frequencies: 0.008795
931000 -- (-3218.707) (-3208.904) (-3223.514) [-3215.255] * [-3207.613] (-3215.682) (-3213.188) (-3210.315) -- 0:01:03
932000 -- [-3216.868] (-3226.744) (-3217.507) (-3225.424) * (-3219.008) (-3207.185) [-3209.738] (-3214.422) -- 0:01:02
933000 -- (-3220.778) (-3207.446) [-3206.132] (-3211.061) * (-3214.132) (-3205.092) [-3212.811] (-3213.550) -- 0:01:01
934000 -- (-3229.677) (-3209.231) [-3219.665] (-3220.659) * (-3217.835) (-3211.623) (-3227.932) [-3210.823] -- 0:01:00
935000 -- (-3222.204) (-3215.851) [-3210.607] (-3223.185) * [-3217.309] (-3237.372) (-3228.688) (-3216.223) -- 0:01:00
Average standard deviation of split frequencies: 0.008608
936000 -- [-3212.615] (-3213.839) (-3209.534) (-3215.796) * (-3216.723) (-3222.898) (-3217.354) [-3209.168] -- 0:00:59
937000 -- (-3223.986) (-3211.345) (-3225.135) [-3212.292] * (-3223.606) [-3216.027] (-3217.795) (-3219.747) -- 0:00:58
938000 -- (-3219.896) [-3214.525] (-3213.438) (-3218.898) * (-3210.108) (-3225.400) (-3210.228) [-3214.895] -- 0:00:57
939000 -- (-3221.348) [-3213.861] (-3224.573) (-3221.718) * (-3209.769) [-3210.392] (-3215.594) (-3215.648) -- 0:00:56
940000 -- [-3212.394] (-3216.591) (-3218.758) (-3223.781) * (-3226.440) [-3214.731] (-3213.670) (-3211.719) -- 0:00:55
Average standard deviation of split frequencies: 0.008724
941000 -- (-3210.104) [-3211.583] (-3228.663) (-3218.324) * (-3218.589) (-3218.990) [-3216.718] (-3222.443) -- 0:00:54
942000 -- (-3207.598) (-3224.570) [-3221.501] (-3218.469) * (-3223.038) (-3229.733) (-3218.407) [-3216.184] -- 0:00:53
943000 -- (-3211.234) (-3219.558) (-3212.682) [-3213.365] * (-3229.264) (-3212.906) [-3211.243] (-3224.502) -- 0:00:52
944000 -- (-3216.094) (-3222.680) (-3204.552) [-3213.845] * (-3229.895) (-3215.297) (-3220.096) [-3212.201] -- 0:00:51
945000 -- (-3237.486) (-3212.894) [-3216.950] (-3212.471) * (-3213.680) (-3229.783) [-3215.493] (-3226.032) -- 0:00:50
Average standard deviation of split frequencies: 0.008562
946000 -- (-3221.970) [-3217.952] (-3201.673) (-3208.966) * (-3223.296) (-3231.419) (-3225.144) [-3209.392] -- 0:00:49
947000 -- (-3214.002) [-3229.002] (-3218.897) (-3218.936) * [-3228.090] (-3228.286) (-3213.981) (-3216.054) -- 0:00:49
948000 -- (-3217.444) [-3220.596] (-3229.718) (-3213.915) * (-3229.046) [-3208.661] (-3211.269) (-3211.496) -- 0:00:48
949000 -- (-3225.669) (-3216.137) [-3207.271] (-3212.885) * (-3220.754) [-3218.266] (-3214.829) (-3215.282) -- 0:00:47
950000 -- (-3216.123) (-3219.195) [-3205.500] (-3212.691) * (-3223.085) (-3215.542) (-3217.326) [-3211.681] -- 0:00:46
Average standard deviation of split frequencies: 0.009286
951000 -- (-3218.929) [-3213.108] (-3213.216) (-3211.689) * (-3220.464) [-3213.270] (-3210.190) (-3208.646) -- 0:00:45
952000 -- (-3212.795) [-3221.714] (-3209.244) (-3218.949) * (-3209.585) [-3212.824] (-3221.611) (-3214.471) -- 0:00:44
953000 -- (-3220.284) [-3219.422] (-3215.089) (-3214.207) * (-3216.384) [-3210.468] (-3220.460) (-3214.534) -- 0:00:43
954000 -- (-3210.318) (-3229.292) [-3211.901] (-3230.473) * (-3220.576) (-3220.551) [-3216.881] (-3227.555) -- 0:00:42
955000 -- (-3215.900) [-3207.921] (-3213.194) (-3214.233) * (-3208.291) (-3209.736) [-3220.528] (-3229.877) -- 0:00:41
Average standard deviation of split frequencies: 0.009593
956000 -- (-3214.283) [-3210.579] (-3210.166) (-3227.886) * (-3214.022) (-3230.365) [-3216.959] (-3216.002) -- 0:00:40
957000 -- [-3216.574] (-3208.154) (-3212.446) (-3212.788) * [-3216.164] (-3223.671) (-3210.857) (-3224.370) -- 0:00:39
958000 -- (-3215.575) (-3212.549) (-3206.794) [-3220.282] * (-3208.453) (-3233.366) (-3216.869) [-3210.028] -- 0:00:38
959000 -- (-3217.030) (-3224.236) (-3219.199) [-3218.705] * (-3216.383) [-3216.514] (-3218.116) (-3213.628) -- 0:00:37
960000 -- [-3216.689] (-3220.815) (-3211.161) (-3214.837) * [-3217.855] (-3215.130) (-3211.025) (-3214.903) -- 0:00:37
Average standard deviation of split frequencies: 0.009323
961000 -- [-3208.753] (-3208.332) (-3218.748) (-3222.775) * (-3217.646) (-3212.160) (-3221.650) [-3218.154] -- 0:00:36
962000 -- [-3215.200] (-3216.636) (-3214.908) (-3214.813) * (-3215.889) (-3210.673) [-3215.990] (-3213.584) -- 0:00:35
963000 -- (-3219.977) (-3225.184) [-3215.316] (-3222.543) * (-3219.677) [-3209.327] (-3216.606) (-3212.922) -- 0:00:34
964000 -- (-3214.263) (-3218.258) [-3207.768] (-3228.440) * (-3228.734) [-3218.238] (-3219.229) (-3212.620) -- 0:00:33
965000 -- [-3224.218] (-3224.106) (-3208.021) (-3214.279) * (-3217.973) (-3211.126) [-3214.217] (-3222.929) -- 0:00:32
Average standard deviation of split frequencies: 0.009139
966000 -- (-3221.836) (-3216.051) [-3212.488] (-3219.256) * (-3227.564) (-3211.485) [-3206.672] (-3219.527) -- 0:00:31
967000 -- (-3213.474) (-3211.833) [-3212.626] (-3221.493) * [-3212.508] (-3215.608) (-3219.459) (-3219.230) -- 0:00:30
968000 -- (-3209.367) [-3211.449] (-3213.882) (-3214.200) * [-3215.190] (-3220.150) (-3222.671) (-3213.274) -- 0:00:29
969000 -- (-3215.951) (-3218.683) (-3215.597) [-3213.938] * (-3219.231) [-3224.900] (-3219.516) (-3223.725) -- 0:00:28
970000 -- [-3217.638] (-3209.612) (-3212.459) (-3220.817) * [-3232.630] (-3223.865) (-3219.240) (-3226.030) -- 0:00:27
Average standard deviation of split frequencies: 0.009536
971000 -- [-3221.568] (-3218.996) (-3225.487) (-3231.360) * (-3216.180) (-3222.249) [-3214.800] (-3207.980) -- 0:00:26
972000 -- (-3211.546) [-3213.358] (-3216.533) (-3219.109) * (-3212.489) [-3214.154] (-3215.683) (-3214.837) -- 0:00:25
973000 -- [-3213.871] (-3216.150) (-3215.073) (-3218.293) * (-3215.693) (-3212.015) (-3213.096) [-3215.914] -- 0:00:24
974000 -- [-3212.331] (-3229.911) (-3207.574) (-3223.724) * [-3214.196] (-3219.923) (-3217.478) (-3213.418) -- 0:00:24
975000 -- (-3212.234) (-3215.651) [-3213.327] (-3229.084) * (-3217.962) (-3219.175) (-3227.752) [-3210.836] -- 0:00:23
Average standard deviation of split frequencies: 0.009528
976000 -- (-3215.687) (-3215.993) (-3213.239) [-3219.186] * [-3205.590] (-3222.533) (-3222.367) (-3210.338) -- 0:00:22
977000 -- (-3213.377) (-3214.244) [-3209.147] (-3225.387) * (-3216.544) [-3219.510] (-3220.456) (-3210.780) -- 0:00:21
978000 -- [-3213.037] (-3221.341) (-3227.919) (-3224.112) * (-3218.626) (-3206.385) (-3217.222) [-3220.802] -- 0:00:20
979000 -- (-3222.201) (-3220.166) [-3217.247] (-3218.517) * [-3215.004] (-3217.499) (-3220.162) (-3217.800) -- 0:00:19
980000 -- [-3218.385] (-3226.509) (-3206.010) (-3223.698) * (-3222.941) [-3214.597] (-3218.048) (-3221.092) -- 0:00:18
Average standard deviation of split frequencies: 0.009090
981000 -- (-3212.348) (-3219.661) [-3213.468] (-3215.811) * [-3215.404] (-3218.168) (-3226.731) (-3225.941) -- 0:00:17
982000 -- (-3211.679) [-3212.034] (-3221.974) (-3217.979) * (-3214.399) [-3223.585] (-3209.268) (-3214.706) -- 0:00:16
983000 -- (-3208.779) [-3210.559] (-3217.892) (-3211.099) * (-3214.388) (-3206.734) (-3217.560) [-3211.403] -- 0:00:15
984000 -- (-3208.289) [-3211.660] (-3214.803) (-3215.330) * (-3223.087) (-3217.481) [-3213.311] (-3217.230) -- 0:00:14
985000 -- (-3217.510) (-3212.638) [-3211.088] (-3208.959) * (-3219.975) (-3213.505) [-3222.784] (-3218.999) -- 0:00:13
Average standard deviation of split frequencies: 0.009410
986000 -- [-3211.649] (-3226.128) (-3211.756) (-3207.460) * (-3214.391) [-3208.076] (-3212.170) (-3223.756) -- 0:00:12
987000 -- (-3215.248) [-3211.473] (-3219.803) (-3209.197) * [-3211.312] (-3219.308) (-3217.697) (-3228.618) -- 0:00:12
988000 -- (-3215.562) (-3212.732) [-3208.948] (-3220.990) * [-3206.574] (-3219.223) (-3235.954) (-3219.736) -- 0:00:11
989000 -- [-3222.357] (-3213.906) (-3230.322) (-3221.887) * [-3209.290] (-3211.055) (-3215.302) (-3220.783) -- 0:00:10
990000 -- (-3222.618) (-3224.121) [-3214.096] (-3224.187) * (-3213.079) (-3209.250) [-3218.267] (-3224.764) -- 0:00:09
Average standard deviation of split frequencies: 0.009387
991000 -- (-3220.443) [-3210.193] (-3231.020) (-3211.359) * (-3218.320) (-3217.716) [-3212.926] (-3217.177) -- 0:00:08
992000 -- (-3217.252) [-3212.115] (-3221.322) (-3213.975) * (-3210.546) (-3225.221) (-3220.349) [-3205.535] -- 0:00:07
993000 -- (-3216.332) [-3218.540] (-3227.295) (-3219.247) * (-3222.150) (-3227.860) [-3211.325] (-3217.918) -- 0:00:06
994000 -- (-3210.158) (-3220.109) (-3225.840) [-3214.906] * [-3217.516] (-3209.038) (-3213.790) (-3206.715) -- 0:00:05
995000 -- (-3216.911) (-3218.221) [-3214.410] (-3216.032) * (-3227.235) (-3211.728) [-3211.596] (-3211.987) -- 0:00:04
Average standard deviation of split frequencies: 0.009638
996000 -- (-3213.166) (-3220.660) (-3218.873) [-3213.910] * [-3219.134] (-3211.915) (-3217.627) (-3232.892) -- 0:00:03
997000 -- (-3213.376) (-3216.935) (-3212.614) [-3221.006] * (-3224.429) (-3216.956) [-3217.172] (-3212.173) -- 0:00:02
998000 -- (-3228.213) (-3224.020) (-3218.253) [-3224.568] * (-3218.985) (-3233.395) (-3209.695) [-3213.509] -- 0:00:01
999000 -- (-3215.306) [-3209.066] (-3210.721) (-3210.348) * (-3215.880) (-3223.079) (-3214.156) [-3213.948] -- 0:00:00
1000000 -- (-3215.736) (-3223.745) [-3218.817] (-3214.992) * (-3219.132) [-3212.471] (-3207.714) (-3223.176) -- 0:00:00
Average standard deviation of split frequencies: 0.009507
Analysis completed in 15 mins 25 seconds
Analysis used 923.37 seconds of CPU time
Likelihood of best state for "cold" chain of run 1 was -3197.67
Likelihood of best state for "cold" chain of run 2 was -3197.71
Acceptance rates for the moves in the "cold" chain of run 1:
With prob. (last 100) chain accepted proposals by move
34.2 % ( 23 %) Dirichlet(Revmat{all})
53.9 % ( 46 %) Slider(Revmat{all})
24.0 % ( 28 %) Dirichlet(Pi{all})
26.8 % ( 30 %) Slider(Pi{all})
28.5 % ( 30 %) Multiplier(Alpha{1,2})
48.6 % ( 34 %) Multiplier(Alpha{3})
48.6 % ( 28 %) Slider(Pinvar{all})
30.4 % ( 29 %) ExtSPR(Tau{all},V{all})
14.7 % ( 9 %) ExtTBR(Tau{all},V{all})
30.6 % ( 30 %) NNI(Tau{all},V{all})
37.3 % ( 36 %) ParsSPR(Tau{all},V{all})
26.6 % ( 20 %) Multiplier(V{all})
34.7 % ( 34 %) Nodeslider(V{all})
25.1 % ( 23 %) TLMultiplier(V{all})
Acceptance rates for the moves in the "cold" chain of run 2:
With prob. (last 100) chain accepted proposals by move
34.0 % ( 27 %) Dirichlet(Revmat{all})
53.9 % ( 45 %) Slider(Revmat{all})
23.7 % ( 28 %) Dirichlet(Pi{all})
26.6 % ( 23 %) Slider(Pi{all})
29.2 % ( 23 %) Multiplier(Alpha{1,2})
47.8 % ( 24 %) Multiplier(Alpha{3})
48.6 % ( 34 %) Slider(Pinvar{all})
30.3 % ( 29 %) ExtSPR(Tau{all},V{all})
14.9 % ( 12 %) ExtTBR(Tau{all},V{all})
30.2 % ( 22 %) NNI(Tau{all},V{all})
37.1 % ( 41 %) ParsSPR(Tau{all},V{all})
26.5 % ( 24 %) Multiplier(V{all})
34.3 % ( 35 %) Nodeslider(V{all})
24.9 % ( 24 %) TLMultiplier(V{all})
Chain swap information for run 1:
1 2 3 4
----------------------------------
1 | 0.74 0.53 0.36
2 | 167026 0.76 0.56
3 | 166774 166749 0.78
4 | 166418 166673 166360
Chain swap information for run 2:
1 2 3 4
----------------------------------
1 | 0.74 0.53 0.36
2 | 166847 0.76 0.56
3 | 167235 165771 0.78
4 | 166133 167307 166707
Upper diagonal: Proportion of successful state exchanges between chains
Lower diagonal: Number of attempted state exchanges between chains
Chain information:
ID -- Heat
-----------
1 -- 1.00 (cold chain)
2 -- 0.91
3 -- 0.83
4 -- 0.77
Heat = 1 / (1 + T * (ID - 1))
(where T = 0.10 is the temperature and ID is the chain number)
Setting burn-in to 2500
Summarizing parameters in files /data/mrbayes_input.nex.run1.p and /data/mrbayes_input.nex.run2.p
Writing summary statistics to file /data/mrbayes_input.nex.pstat
Using relative burnin ('relburnin=yes'), discarding the first 25 % of samples
Below are rough plots of the generation (x-axis) versus the log
probability of observing the data (y-axis). You can use these
graphs to determine what the burn in for your analysis should be.
When the log probability starts to plateau you may be at station-
arity. Sample trees and parameters after the log probability
plateaus. Of course, this is not a guarantee that you are at sta-
tionarity. Also examine the convergence diagnostics provided by
the 'sump' and 'sumt' commands for all the parameters in your
model. Remember that the burn in is the number of samples to dis-
card. There are a total of ngen / samplefreq samples taken during
a MCMC analysis.
Overlay plot for both runs:
(1 = Run number 1; 2 = Run number 2; * = Both runs)
+------------------------------------------------------------+ -3211.08
| 2 1 |
| 2 |
| 2 2 1 2 2 |
|2 2 2 2 1 |
|1 1 1 2 1 2|
| 21 2 21 1 112 121 1 1 1 1 2 1 |
| 1 2 21 2 1 2 11 1 12 2 2 |
| 2 21 1 2 1 2 * 2 1 1 1 1 |
| 1 21* 1* 1 2 1 222 2 211 2 |
| 1 1 2122 2 2 1* 1 21|
| 2 1 1 1 1 1 2 1 2 |
| 2 2 2 2 2 |
| 22 |
| 11 2 |
| 1 2 1 |
+------+-----+-----+-----+-----+-----+-----+-----+-----+-----+ -3217.14
^ ^
250000 1000000
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -3205.21 -3226.33
2 -3206.25 -3226.28
--------------------------------------
TOTAL -3205.60 -3226.30
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.512965 0.031626 1.169827 1.860256 1.498198 917.82 986.11 1.000
r(A<->C){all} 0.097816 0.000430 0.056374 0.136804 0.096744 758.98 865.18 1.000
r(A<->G){all} 0.267610 0.001226 0.204683 0.339859 0.265897 556.54 680.42 1.003
r(A<->T){all} 0.038659 0.000110 0.019753 0.059375 0.037635 1083.94 1127.07 1.000
r(C<->G){all} 0.010223 0.000081 0.000009 0.028096 0.007731 759.85 766.09 1.000
r(C<->T){all} 0.509992 0.001623 0.431701 0.586344 0.509641 447.62 672.56 1.002
r(G<->T){all} 0.075701 0.000189 0.050824 0.103782 0.074695 820.92 869.86 1.000
pi(A){all} 0.253632 0.000168 0.227566 0.278333 0.253579 1063.47 1137.36 1.000
pi(C){all} 0.164283 0.000100 0.145317 0.184251 0.163997 791.32 977.30 1.000
pi(G){all} 0.194912 0.000136 0.171938 0.217666 0.194600 1009.73 1115.43 1.001
pi(T){all} 0.387174 0.000197 0.361025 0.415676 0.387253 768.66 1007.14 1.001
alpha{1,2} 0.204198 0.000790 0.153472 0.259952 0.200955 1274.58 1298.88 1.000
alpha{3} 4.903313 2.726122 2.124069 8.211113 4.683804 1313.09 1371.19 1.000
pinvar{all} 0.228860 0.002517 0.128393 0.327870 0.231880 1267.65 1323.04 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
Setting urn-in to 2500
Summarizing trees in files "/data/mrbayes_input.nex.run1.t" and "/data/mrbayes_input.nex.run2.t"
Using relative burnin ('relburnin=yes'), discarding the first 25 % of sampled trees
Writing statistics to files /data/mrbayes_input.nex.<parts|tstat|vstat|trprobs|con>
Examining first file ...
Found one tree block in file "/data/mrbayes_input.nex.run1.t" with 2001 trees in last block
Expecting the same number of trees in the last tree block of all files
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
Read a total of 4002 trees in 2 files (sampling 3002 of them)
(Each file contained 2001 trees of which 1501 were sampled)
General explanation:
In an unrooted tree, a taxon bipartition (split) is specified by removing a
branch, thereby dividing the species into those to the left and those to the
right of the branch. Here, taxa to one side of the removed branch are denoted
'.' and those to the other side are denoted '*'. Specifically, the '.' symbol
is used for the taxa on the same side as the outgroup.
In a rooted or clock tree, the tree is rooted using the model and not by
reference to an outgroup. Each bipartition therefore corresponds to a clade,
that is, a group that includes all the descendants of a particular branch in
the tree. Taxa that are included in each clade are denoted using '*', and
taxa that are not included are denoted using the '.' symbol.
The output first includes a key to all the bipartitions with frequency larger
or equual to (Minpartfreq) in at least one run. Minpartfreq is a parameter to
sumt command and currently it is set to 0.10. This is followed by a table
with statistics for the informative bipartitions (those including at least
two taxa), sorted from highest to lowest probability. For each bipartition,
the table gives the number of times the partition or split was observed in all
runs (#obs) and the posterior probability of the bipartition (Probab.), which
is the same as the split frequency. If several runs are summarized, this is
followed by the minimum split frequency (Min(s)), the maximum frequency
(Max(s)), and the standard deviation of frequencies (Stddev(s)) across runs.
The latter value should approach 0 for all bipartitions as MCMC runs converge.
This is followed by a table summarizing branch lengths, node heights (if a
clock model was used) and relaxed clock parameters (if a relaxed clock model
was used). The mean, variance, and 95 % credible interval are given for each
of these parameters. If several runs are summarized, the potential scale
reduction factor (PSRF) is also given; it should approach 1 as runs converge.
Node heights will take calibration points into account, if such points were
used in the analysis.
Note that Stddev may be unreliable if the partition is not present in all
runs (the last column indicates the number of runs that sampled the partition
if more than one run is summarized). The PSRF is not calculated at all if
the partition is not present in all runs.The PSRF is also sensitive to small
sample sizes and it should only be considered a rough guide to convergence
since some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in MrBayes.
List of taxa in bipartitions:
1 -- C1
2 -- C10
3 -- C11
4 -- C12
5 -- C13
6 -- C2
7 -- C3
8 -- C4
9 -- C5
10 -- C6
11 -- C7
12 -- C8
13 -- C9
Key to taxon bipartitions (saved to file "/data/mrbayes_input.nex.parts"):
ID -- Partition
-------------------
1 -- .************
2 -- .*...........
3 -- ..*..........
4 -- ...*.........
5 -- ....*........
6 -- .....*.......
7 -- ......*......
8 -- .......*.....
9 -- ........*....
10 -- .........*...
11 -- ..........*..
12 -- ...........*.
13 -- ............*
14 -- .****.**.*.**
15 -- .****.*..*.**
16 -- .****.*.....*
17 -- .*..........*
18 -- ..***........
19 -- .****.*..*..*
20 -- .****.......*
21 -- ..***.*......
22 -- .****.****.**
23 -- ..*.*........
24 -- ..**.........
25 -- ...**........
26 -- .*********.**
27 -- .****.*******
28 -- .....*....*..
29 -- .....*..*....
30 -- .****.**.****
31 -- ........*.*..
32 -- .*******.*.**
33 -- .....*..*.*..
34 -- .*******.****
35 -- .*....*.....*
-------------------
Summary statistics for informative taxon bipartitions
(saved to file "/data/mrbayes_input.nex.tstat"):
ID #obs Probab. Sd(s)+ Min(s) Max(s) Nruns
----------------------------------------------------------------
14 3002 1.000000 0.000000 1.000000 1.000000 2
15 3002 1.000000 0.000000 1.000000 1.000000 2
16 3002 1.000000 0.000000 1.000000 1.000000 2
17 3001 0.999667 0.000471 0.999334 1.000000 2
18 2924 0.974017 0.010364 0.966689 0.981346 2
19 2880 0.959360 0.004711 0.956029 0.962692 2
20 1347 0.448701 0.034390 0.424384 0.473018 2
21 1294 0.431046 0.028265 0.411059 0.451033 2
22 1072 0.357095 0.007537 0.351765 0.362425 2
23 1072 0.357095 0.026381 0.338441 0.375750 2
24 953 0.317455 0.022141 0.301799 0.333111 2
25 930 0.309793 0.010364 0.302465 0.317122 2
26 707 0.235510 0.001413 0.234510 0.236509 2
27 676 0.225183 0.008480 0.219187 0.231179 2
28 619 0.206196 0.005182 0.202532 0.209860 2
29 511 0.170220 0.004240 0.167222 0.173218 2
30 504 0.167888 0.011306 0.159893 0.175883 2
31 496 0.165223 0.009422 0.158561 0.171885 2
32 474 0.157895 0.005653 0.153897 0.161892 2
33 474 0.157895 0.007537 0.152565 0.163225 2
34 471 0.156895 0.005182 0.153231 0.160560 2
35 361 0.120253 0.006124 0.115923 0.124584 2
----------------------------------------------------------------
+ Convergence diagnostic (standard deviation of split frequencies)
should approach 0.0 as runs converge.
Summary statistics for branch and node parameters
(saved to file "/data/mrbayes_input.nex.vstat"):
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median PSRF+ Nruns
-------------------------------------------------------------------------------------------
length{all}[1] 0.001603 0.000003 0.000000 0.004946 0.001093 1.000 2
length{all}[2] 0.001604 0.000003 0.000000 0.004831 0.001105 1.000 2
length{all}[3] 0.003188 0.000005 0.000004 0.007835 0.002600 1.000 2
length{all}[4] 0.012717 0.000024 0.004402 0.023724 0.012219 1.000 2
length{all}[5] 0.001734 0.000003 0.000000 0.005023 0.001202 1.000 2
length{all}[6] 0.001624 0.000003 0.000000 0.004706 0.001136 1.000 2
length{all}[7] 0.034001 0.000206 0.004914 0.060350 0.034881 1.000 2
length{all}[8] 0.049364 0.000160 0.025067 0.074169 0.048397 1.000 2
length{all}[9] 0.052037 0.000122 0.031291 0.073466 0.051113 1.000 2
length{all}[10] 0.160493 0.002347 0.072850 0.262440 0.156626 1.000 2
length{all}[11] 0.004832 0.000008 0.000372 0.010359 0.004271 1.001 2
length{all}[12] 0.062323 0.000336 0.028325 0.099857 0.060824 1.000 2
length{all}[13] 0.001642 0.000003 0.000001 0.004891 0.001149 1.000 2
length{all}[14] 0.033884 0.000116 0.015541 0.056651 0.032834 1.000 2
length{all}[15] 0.077885 0.000408 0.040925 0.118079 0.076035 1.000 2
length{all}[16] 0.790506 0.018508 0.526424 1.043448 0.778997 1.001 2
length{all}[17] 0.074216 0.000507 0.028695 0.117841 0.076077 1.000 2
length{all}[18] 0.037184 0.000121 0.016433 0.059562 0.036383 1.000 2
length{all}[19] 0.087039 0.001523 0.011152 0.159248 0.084175 1.000 2
length{all}[20] 0.019341 0.000143 0.000168 0.041605 0.017754 0.999 2
length{all}[21] 0.028114 0.000347 0.000012 0.064242 0.024981 0.999 2
length{all}[22] 0.002911 0.000007 0.000000 0.008433 0.002106 0.999 2
length{all}[23] 0.002024 0.000004 0.000004 0.005841 0.001376 0.999 2
length{all}[24] 0.001662 0.000003 0.000000 0.005149 0.001092 1.001 2
length{all}[25] 0.001643 0.000003 0.000002 0.004719 0.001119 0.999 2
length{all}[26] 0.001725 0.000003 0.000002 0.004999 0.001219 0.999 2
length{all}[27] 0.001525 0.000002 0.000002 0.004585 0.001140 0.999 2
length{all}[28] 0.001558 0.000003 0.000001 0.004864 0.001062 0.999 2
length{all}[29] 0.001635 0.000003 0.000001 0.005001 0.001037 0.998 2
length{all}[30] 0.001718 0.000003 0.000007 0.005192 0.001195 1.003 2
length{all}[31] 0.001798 0.000003 0.000001 0.005172 0.001277 0.998 2
length{all}[32] 0.001654 0.000003 0.000001 0.004716 0.001217 1.002 2
length{all}[33] 0.001733 0.000003 0.000010 0.004758 0.001180 1.003 2
length{all}[34] 0.001592 0.000003 0.000001 0.004839 0.001036 1.006 2
length{all}[35] 0.017282 0.000193 0.000041 0.042354 0.013211 1.020 2
-------------------------------------------------------------------------------------------
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge. NA is reported when
deviation of parameter values within all runs is 0 or when a parameter
value (a branch length, for instance) is not sampled in all runs.
Summary statistics for partitions with frequency >= 0.10 in at least one run:
Average standard deviation of split frequencies = 0.009507
Maximum standard deviation of split frequencies = 0.034390
Average PSRF for parameter values (excluding NA and >10.0) = 1.001
Maximum PSRF for parameter values = 1.020
Clade credibility values:
/----------------------------------------------------------------------- C1 (1)
|
|----------------------------------------------------------------------- C2 (6)
|
|----------------------------------------------------------------------- C5 (9)
|
|----------------------------------------------------------------------- C7 (11)
|
| /------------ C10 (2)
| /----100----+
| | \------------ C9 (13)
+ |
| | /------------ C11 (3)
| | |
| /----100---+-----97----+------------ C12 (4)
| | | |
| | | \------------ C13 (5)
| /-----96----+ |
| | | \------------------------ C3 (7)
| | |
| /----100----+ \----------------------------------- C6 (10)
| | |
\----100----+ \----------------------------------------------- C8 (12)
|
\----------------------------------------------------------- C4 (8)
Phylogram (based on average branch lengths):
/ C1 (1)
|
| C2 (6)
|
|--- C5 (9)
|
| C7 (11)
|
| / C10 (2)
| /----+
| | \ C9 (13)
+ |
| | / C11 (3)
| | |
| /----------------------------------------------------+-+- C12 (4)
| | | |
| | | \ C13 (5)
| /-----+ |
| | | \-- C3 (7)
| | |
| /----+ \----------- C6 (10)
| | |
\-+ \---- C8 (12)
|
\--- C4 (8)
|------------| 0.200 expected changes per site
Calculating tree probabilities...
Credible sets of trees (263 trees sampled):
50 % credible set contains 40 trees
90 % credible set contains 109 trees
95 % credible set contains 146 trees
99 % credible set contains 233 trees
Exiting mrbayes block
Reached end of file
Tasks completed, exiting program because mode is noninteractive
To return control to the command line after completion of file processing,
set mode to interactive with 'mb -i <filename>' (i is for interactive)
or use 'set mode=interactive'
-- Starting log on Wed Nov 09 22:46:34 GMT 2022 --
-- Iteration: /working_dir/input/2_modified/A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1.result--
CLUSTAL FORMAT for T-COFFEE Version_12.00.7fb08c2 [http://www.tcoffee.org] [MODE: ], CPU=0.07 sec, SCORE=1000, Nseq=13, Len=303
C1 ---SGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITT
C2 ---SGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITT
C3 ---AGKVTSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTT
C4 ----GKVKSLFYPVMTAIAILFAFWLEFFMYTPFTWINPTFVSIILAITT
C5 ---SGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITT
C6 ---SGKVKSLFYPMMTAVAILFSFWLEFFMYTPFTWINPSFVSVILAITT
C7 NLQSGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITT
C8 ---SGKVKSLFYPVMTAMAILFAFWLEFFMYTPFTWINPTFVSAILAITT
C9 ---AGKVKSFFYPIVTAMTILFAFWLEFFMYTPFTWINPAFVSFVLAVTT
C10 ---AGKVKSFFYPIVTAMTILFAFWLEFFMYTPFTWINPAFVSFVLAVTT
C11 ---AGKVKSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTT
C12 ---AGKVKSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTT
C13 ----------FYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTT
***::**::***:****************:*** :**:**
C1 LVSVLLVAGIKHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENV
C2 LVSVLLVAGIKHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENV
C3 LISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENT
C4 LVSVLLVAGIKHKMLFFMSFVMPSVVLATAHNFVWDMTCYESLQVLVENV
C5 LVSVLLVAGIKHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENV
C6 IFSVLLVAGIKHKMLFFMSFVMPSVVLSTVHNVVWDMTYYESLQVLVENT
C7 LVSVLLVAGIKHKMLFFMSFVMPSVILVTAHNVVWDMTYYESLQVLVENV
C8 LVSVMLVAGIKHKMLFFMSFVMPSVVLATVHNVVWDMTYYESLQVLVENV
C9 LVSTVFVSGIKHKMLFFMSFVLPSVVLVTAHNLFWDFSYYESLQSIVENT
C10 LVSTVFVSGIKHKMLFFMSFVLPSVVLVTAHNLFWDFSYYESLQSIVENT
C11 LISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENT
C12 LISTFFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENT
C13 LISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENT
:.*..:*:*************:***:* *.**..**:: ***** :***.
C1 NTTFLPVDMQGVMLALFCVVVFVICTIRFFTCKQSWFSLFATTIFVMFNI
C2 NTTFLPVDMQGVMLALFCVVVFVICTIRFFTCKQSWFSLFATTIFVMFNI
C3 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTVLVIFNM
C4 NTTFLPVDMQGVMLALFCVAVFVTYTIRFFTCKQSWFSLFATTVFVMFNI
C5 NTTFLPVDMQGVMLHWSVCVLYMHY--KIFTCKQSWFSLFATTIFVMFNI
C6 NTTFLPVDMQGVMLALFCVVVFVTYTIRFFTCKQSWFSLFVTTVFVVFNI
C7 NTTFLPVDMQGVMLALFCVVVFVICTIRFFTCKQSWFSLFATTIFVMFNI
C8 NTTFLPVDMQGVMLALFCVVVFVTYTIRFFTCKQSWFSLFVTTVFVVFNI
C9 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTVLVIFNM
C10 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTVLVIFNM
C11 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNM
C12 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNM
C13 NTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNM
** *********** ::: ::********** .**::*:**:
C1 VKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAYYIVV
C2 VKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAYYIVV
C3 VKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVVASYRIAYYIVV
C4 VKLLGMIGEPWTDDYILLCLVNMLTMLISLTTKDWFVVFVSYKFAYYIVV
C5 VKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAFYIVV
C6 VKLLGMVGEPWTENHILLCLVNMLTMLISLTTKDWFVVFVSYKFAYYVVV
C7 VKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAYYIVV
C8 VKLLGMVGEPWTEDHILLCLVNMLTMLISLTTKDWFVVFASYKFAYYIVV
C9 FKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWVVVVASYRVAYYIVV
C10 FKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWVVVVASYRVAYYIVV
C11 VKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVIASYRIAYYIVV
C12 VKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVVASYRIAYYIVV
C13 VKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVVASYRIAYYIVV
.*::* .****:: : :*:******::*******.**..**:.*:*:**
C1 YVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C2 YVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C3 CVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C4 YVMQPAFVQDFGFVKCISIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C5 YVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C6 YVMQPSFVYDFGFVKCISIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C7 YVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C8 YVMQPAFVQDFGFVKCVSIIYMACGYIFCCYYGILYWVNRFTCMTCGVYQ
C9 CVMPAAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C10 CVMPAAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C11 CVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C12 CVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
C13 CVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQ
** .:** ****:**:**:******:***********************
C1 FTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ---
C2 FTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ---
C3 FTVSAAELKYMTANNLSAPRNAYDAMILSAKLIGVGGKRNIKISTVQ---
C4 FTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGERNIKISTVQ---
C5 FTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ---
C6 FTVSPAELKYMTANNLSAPKTAYDAMILSVKLMGIGGERNIKISTVQ---
C7 FTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ---
C8 FTVSPAELKYMTANNLSAPKTAYDAMILSVKLMGIGGERNIKISTVQ---
C9 FTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ---
C10 FTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ---
C11 FTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ---
C12 FTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ---
C13 FTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQSKL
****.**************:.******** **:*:** *********
C1 ---
C2 ---
C3 ---
C4 ---
C5 ---
C6 ---
C7 ---
C8 ---
C9 ---
C10 ---
C11 ---
C12 ---
C13 TEM
-- Starting log on Thu Nov 10 16:39:52 GMT 2022 --
-- Iteration: /working_dir/pss_subsets/A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/codeml,A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1.result.1--
CODONML in paml version 4.9h, March 2018
----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
TTC | TCC | TAC | TGC
Leu L TTA | TCA | *** * TAA | *** * TGA
TTG | TCG | TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
CTC | CCC | CAC | CGC
CTA | CCA | Gln Q CAA | CGA
CTG | CCG | CAG | CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
ATC | ACC | AAC | AGC
ATA | ACA | Lys K AAA | Arg R AGA
Met M ATG | ACG | AAG | AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
GTC | GCC | GAC | GGC
GTA | GCA | Glu E GAA | GGA
GTG | GCG | GAG | GGG
----------------------------------------------
Nice code, uuh?
NSsites batch run (ncatG as in YNGP2000): 1 2 7 8
processing fasta file
reading seq# 1 C1 909 sites
reading seq# 2 C2 909 sites
reading seq# 3 C3 909 sites
reading seq# 4 C4 909 sites
reading seq# 5 C5 909 sites
reading seq# 6 C6 909 sites
reading seq# 7 C7 909 sites
reading seq# 8 C8 909 sites
reading seq# 9 C9 909 sites
reading seq#10 C10 909 sites
reading seq#11 C11 909 sites
reading seq#12 C12 909 sites
reading seq#13 C13 909 sitesns = 13 ls = 909
Reading sequences, sequential format..
Reading seq # 1: C1
Reading seq # 2: C2
Reading seq # 3: C3
Reading seq # 4: C4
Reading seq # 5: C5
Reading seq # 6: C6
Reading seq # 7: C7
Reading seq # 8: C8
Reading seq # 9: C9
Reading seq #10: C10
Reading seq #11: C11
Reading seq #12: C12
Reading seq #13: C13
Sites with gaps or missing data are removed.
27 ambiguity characters in seq. 1
27 ambiguity characters in seq. 2
27 ambiguity characters in seq. 3
30 ambiguity characters in seq. 4
33 ambiguity characters in seq. 5
27 ambiguity characters in seq. 6
18 ambiguity characters in seq. 7
27 ambiguity characters in seq. 8
27 ambiguity characters in seq. 9
27 ambiguity characters in seq. 10
27 ambiguity characters in seq. 11
27 ambiguity characters in seq. 12
30 ambiguity characters in seq. 13
18 sites are removed. 1 2 3 4 5 6 7 8 9 10 126 127 298 299 300 301 302 303
Sequences read..
Counting site patterns.. 0:00
Compressing, 230 patterns at 285 / 285 sites (100.0%), 0:00
Collecting fpatt[] & pose[], 230 patterns at 285 / 285 sites (100.0%), 0:00
Counting codons..
624 bytes for distance
224480 bytes for conP
20240 bytes for fhK
5000000 bytes for space
Model 1: NearlyNeutral
TREE # 1
(1, 2, 5, 7, (((((10, 9), (11, 12, 13), 3), 6), 8), 4)); MP score: 400
785680 bytes for conP, adjusted
0.029366 0.071297 0.032071 0.030365 0.099975 0.066109 0.030639 0.032781 0.054292 0.106386 0.089744 0.032932 0.028950 0.069823 0.021686 0.031570 0.021944 0.104026 0.103275 0.300000 0.521802 0.400466
ntime & nrate & np: 19 2 22
Bounds (np=22):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.000001
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 1.000000
Qfactor_NS = 9.457893
np = 22
lnL0 = -3965.950712
Iterating by ming2
Initial: fx= 3965.950712
x= 0.02937 0.07130 0.03207 0.03036 0.09997 0.06611 0.03064 0.03278 0.05429 0.10639 0.08974 0.03293 0.02895 0.06982 0.02169 0.03157 0.02194 0.10403 0.10327 0.30000 0.52180 0.40047
1 h-m-p 0.0000 0.0001 4882.9393 ++ 3461.651461 m 0.0001 27 | 1/22
2 h-m-p 0.0000 0.0000 896.3501 ++ 3438.909097 m 0.0000 52 | 2/22
3 h-m-p 0.0000 0.0000 3290.2121 ++ 3356.699943 m 0.0000 77 | 3/22
4 h-m-p 0.0000 0.0000 1627.0091 ++ 3332.741994 m 0.0000 102 | 4/22
5 h-m-p 0.0000 0.0000 46089.3484 ++ 3317.007979 m 0.0000 127 | 5/22
6 h-m-p 0.0000 0.0002 1546.3331 ++ 3233.906276 m 0.0002 152 | 5/22
7 h-m-p 0.0000 0.0001 1314.4018 +YCYCCC 3217.837177 5 0.0001 186 | 5/22
8 h-m-p 0.0000 0.0002 449.5361 +YYCC 3209.688005 3 0.0001 216 | 5/22
9 h-m-p 0.0001 0.0005 513.4520 +YYYCCC 3184.975122 5 0.0004 249 | 5/22
10 h-m-p 0.0004 0.0021 63.4330 CCCCC 3182.868631 4 0.0005 282 | 5/22
11 h-m-p 0.0004 0.0019 75.9286 CCCCC 3180.584502 4 0.0005 315 | 5/22
12 h-m-p 0.0007 0.0037 30.0706 YCC 3179.977285 2 0.0005 343 | 5/22
13 h-m-p 0.0004 0.0042 44.0752 CC 3179.044376 1 0.0005 370 | 5/22
14 h-m-p 0.0012 0.0300 20.0927 YCCC 3177.866390 3 0.0017 400 | 5/22
15 h-m-p 0.0013 0.0065 18.5438 YCC 3177.411412 2 0.0009 428 | 5/22
16 h-m-p 0.0004 0.0077 42.2116 +YC 3175.822657 1 0.0011 455 | 5/22
17 h-m-p 0.0012 0.0062 32.2096 +YCYCCC 3165.352154 5 0.0034 489 | 5/22
18 h-m-p 0.0003 0.0017 158.1708 +CYCCC 3126.835095 4 0.0015 523 | 5/22
19 h-m-p 0.0000 0.0001 698.0468 +YYYCCC 3115.270869 5 0.0001 556 | 5/22
20 h-m-p 0.0002 0.0012 65.7868 CCCC 3114.321929 3 0.0004 587 | 5/22
21 h-m-p 0.0760 0.4290 0.3318 +CYYYYC 3073.025927 5 0.3968 620 | 5/22
22 h-m-p 0.0627 0.3137 0.9135 YCC 3062.417508 2 0.1363 665 | 5/22
23 h-m-p 0.2069 1.0343 0.4154 YCCC 3044.763561 3 0.4717 712 | 5/22
24 h-m-p 1.2951 6.4755 0.1063 +YCCCC 3010.050141 4 3.5270 762 | 5/22
25 h-m-p 1.5247 7.6237 0.1441 +YCC 2965.865410 2 4.6330 808 | 5/22
26 h-m-p 0.2892 1.4460 0.1056 +YYYCYCCC 2955.348076 7 1.2326 861 | 5/22
27 h-m-p 0.4210 2.1050 0.1512 YCCCCC 2947.055689 5 0.8272 912 | 5/22
28 h-m-p 0.9005 5.3582 0.1389 YCCC 2938.266279 3 2.1593 959 | 5/22
29 h-m-p 1.6000 8.0000 0.1074 YCCC 2931.617918 3 3.0757 1006 | 5/22
30 h-m-p 1.6000 8.0000 0.1412 YCCC 2923.552617 3 3.2905 1053 | 5/22
31 h-m-p 0.8838 4.4191 0.1494 YCCCC 2919.387914 4 1.8288 1102 | 5/22
32 h-m-p 1.6000 8.0000 0.0198 YCCC 2917.815520 3 2.4720 1149 | 5/22
33 h-m-p 1.3151 8.0000 0.0373 CCCC 2916.767051 3 1.6322 1197 | 5/22
34 h-m-p 1.6000 8.0000 0.0239 CCC 2916.314697 2 2.0598 1243 | 5/22
35 h-m-p 1.1334 8.0000 0.0435 +YC 2915.849320 1 3.1420 1287 | 5/22
36 h-m-p 1.6000 8.0000 0.0198 CC 2915.552107 1 2.3917 1331 | 5/22
37 h-m-p 1.6000 8.0000 0.0229 +YCC 2914.950247 2 5.1963 1377 | 5/22
38 h-m-p 1.6000 8.0000 0.0195 +YCC 2914.042060 2 4.9515 1423 | 5/22
39 h-m-p 1.4477 8.0000 0.0669 CCCC 2913.360340 3 2.3631 1471 | 5/22
40 h-m-p 1.6000 8.0000 0.0179 CCC 2913.266573 2 1.4524 1517 | 5/22
41 h-m-p 1.3553 8.0000 0.0191 YC 2913.227688 1 2.3709 1560 | 5/22
42 h-m-p 1.6000 8.0000 0.0060 YC 2913.206921 1 2.8132 1603 | 5/22
43 h-m-p 1.6000 8.0000 0.0063 CC 2913.192669 1 2.5308 1647 | 5/22
44 h-m-p 1.6000 8.0000 0.0089 YC 2913.174523 1 3.0632 1690 | 5/22
45 h-m-p 1.6000 8.0000 0.0045 ++ 2913.114962 m 8.0000 1732 | 5/22
46 h-m-p 1.6000 8.0000 0.0116 +YC 2913.005629 1 4.8902 1776 | 5/22
47 h-m-p 1.6000 8.0000 0.0230 YC 2912.771416 1 3.7224 1819 | 5/22
48 h-m-p 1.6000 8.0000 0.0307 YC 2912.651849 1 2.7748 1862 | 5/22
49 h-m-p 1.6000 8.0000 0.0335 CY 2912.598365 1 1.6749 1906 | 5/22
50 h-m-p 1.6000 8.0000 0.0128 CC 2912.593756 1 2.3747 1950 | 5/22
51 h-m-p 1.6000 8.0000 0.0044 YC 2912.587814 1 3.3609 1993 | 5/22
52 h-m-p 1.6000 8.0000 0.0036 +CC 2912.578952 1 5.9667 2038 | 5/22
53 h-m-p 1.6000 8.0000 0.0031 ++ 2912.540016 m 8.0000 2080 | 5/22
54 h-m-p 1.6000 8.0000 0.0056 ++ 2912.329531 m 8.0000 2122 | 5/22
55 h-m-p 0.5583 8.0000 0.0800 +CYC 2912.020451 2 2.5338 2168 | 5/22
56 h-m-p 1.6000 8.0000 0.0417 CYC 2911.950406 2 1.6346 2213 | 5/22
57 h-m-p 1.6000 8.0000 0.0072 CCC 2911.931600 2 2.2727 2259 | 5/22
58 h-m-p 1.6000 8.0000 0.0065 CC 2911.930279 1 1.2904 2303 | 5/22
59 h-m-p 1.6000 8.0000 0.0007 Y 2911.930255 0 1.0964 2345 | 5/22
60 h-m-p 1.6000 8.0000 0.0002 Y 2911.930255 0 1.0092 2387 | 5/22
61 h-m-p 1.6000 8.0000 0.0000 --Y 2911.930255 0 0.0250 2431 | 5/22
62 h-m-p 0.0160 8.0000 0.0002 C 2911.930255 0 0.0160 2473 | 5/22
63 h-m-p 1.6000 8.0000 0.0000 ---Y 2911.930255 0 0.0063 2518
Out..
lnL = -2911.930255
2519 lfun, 7557 eigenQcodon, 95722 P(t)
end of tree file.
Time used: 0:47
Model 2: PositiveSelection
TREE # 1
(1, 2, 5, 7, (((((10, 9), (11, 12, 13), 3), 6), 8), 4)); MP score: 400
0.091690 0.054804 0.070321 0.015071 0.048492 0.100564 0.085208 0.062704 0.014639 0.103093 0.046456 0.015216 0.076004 0.038338 0.094947 0.031110 0.025791 0.053928 0.094942 3.785639 1.123711 0.313302 0.170945 1.372747
ntime & nrate & np: 19 3 24
Bounds (np=24):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 -99.000000 -99.000000 0.000001 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000 1.000000 999.000000
Qfactor_NS = 3.883731
np = 24
lnL0 = -3572.833313
Iterating by ming2
Initial: fx= 3572.833313
x= 0.09169 0.05480 0.07032 0.01507 0.04849 0.10056 0.08521 0.06270 0.01464 0.10309 0.04646 0.01522 0.07600 0.03834 0.09495 0.03111 0.02579 0.05393 0.09494 3.78564 1.12371 0.31330 0.17095 1.37275
1 h-m-p 0.0000 0.0001 3710.4707 ++ 3176.395460 m 0.0001 29 | 0/24
2 h-m-p 0.0000 0.0000 2227022.7794 ++ 3104.582423 m 0.0000 56 | 1/24
3 h-m-p 0.0000 0.0000 626.3119 ++ 3089.100442 m 0.0000 83 | 2/24
4 h-m-p 0.0000 0.0000 2862.8139 ++ 3055.358971 m 0.0000 110 | 3/24
5 h-m-p 0.0000 0.0000 3452.2583 ++ 3055.318134 m 0.0000 137 | 4/24
6 h-m-p 0.0000 0.0000 867.5167 ++ 3048.352737 m 0.0000 164 | 5/24
7 h-m-p 0.0000 0.0012 494.1098 ++CYYCCC 3001.881546 5 0.0008 202 | 5/24
8 h-m-p 0.0004 0.0018 311.0545 +YYCCC 2974.822993 4 0.0013 236 | 5/24
9 h-m-p 0.0001 0.0007 172.9379 ++ 2964.806955 m 0.0007 263 | 6/24
10 h-m-p 0.0008 0.0041 101.2930 YCCC 2959.917523 3 0.0016 295 | 6/24
11 h-m-p 0.0028 0.0139 52.5213 CCC 2957.358364 2 0.0024 326 | 6/24
12 h-m-p 0.0015 0.0082 87.0807 YCCCC 2952.744471 4 0.0027 360 | 6/24
13 h-m-p 0.0031 0.0157 43.4061 YCCCCC 2945.931226 5 0.0071 396 | 6/24
14 h-m-p 0.0011 0.0057 81.3503 YCCCC 2941.921913 4 0.0026 430 | 6/24
15 h-m-p 0.0014 0.0072 42.1737 YCC 2941.217811 2 0.0012 460 | 6/24
16 h-m-p 0.0035 0.0458 14.0738 YCCC 2939.756239 3 0.0076 492 | 6/24
17 h-m-p 0.0050 0.0249 16.8135 CCC 2937.815888 2 0.0054 523 | 6/24
18 h-m-p 0.0041 0.0205 21.0884 +YCYCCC 2928.724849 5 0.0122 559 | 6/24
19 h-m-p 0.1866 1.1546 1.3773 CCCC 2922.113327 3 0.2857 592 | 6/24
20 h-m-p 0.2016 1.6034 1.9523 YCCC 2919.802248 3 0.3493 624 | 6/24
21 h-m-p 0.4289 2.1444 1.3615 CCCC 2917.576131 3 0.4714 657 | 6/24
22 h-m-p 1.4594 7.2972 0.4136 YCCC 2916.390458 3 0.6785 689 | 6/24
23 h-m-p 1.6000 8.0000 0.1572 CYC 2914.823547 2 1.7984 737 | 6/24
24 h-m-p 1.6000 8.0000 0.1031 CCC 2914.024659 2 1.7903 786 | 6/24
25 h-m-p 0.8913 8.0000 0.2070 CCC 2913.452008 2 0.9757 835 | 6/24
26 h-m-p 0.8035 8.0000 0.2514 CCCC 2912.929910 3 1.1356 886 | 6/24
27 h-m-p 1.6000 8.0000 0.1059 YCC 2912.727400 2 1.0117 934 | 6/24
28 h-m-p 1.6000 8.0000 0.0353 YC 2912.700655 1 0.8632 980 | 6/24
29 h-m-p 1.1751 8.0000 0.0259 C 2912.688691 0 1.1850 1025 | 6/24
30 h-m-p 1.6000 8.0000 0.0155 CC 2912.681710 1 1.7724 1072 | 6/24
31 h-m-p 1.5036 8.0000 0.0182 +YC 2912.671415 1 3.9704 1119 | 6/24
32 h-m-p 1.6000 8.0000 0.0143 YC 2912.658418 1 2.6496 1165 | 6/24
33 h-m-p 1.6000 8.0000 0.0068 ++ 2912.609337 m 8.0000 1210 | 6/24
34 h-m-p 1.6000 8.0000 0.0186 ++ 2912.330530 m 8.0000 1255 | 6/24
35 h-m-p 1.6000 8.0000 0.0724 YCCC 2912.005022 3 3.4467 1305 | 6/24
36 h-m-p 1.6000 8.0000 0.0442 CC 2911.941410 1 1.4846 1352 | 6/24
37 h-m-p 1.6000 8.0000 0.0399 YC 2911.931940 1 1.1643 1398 | 6/24
38 h-m-p 1.6000 8.0000 0.0074 CC 2911.930304 1 1.3829 1445 | 6/24
39 h-m-p 1.6000 8.0000 0.0023 Y 2911.930256 0 1.0906 1490 | 6/24
40 h-m-p 1.6000 8.0000 0.0003 Y 2911.930255 0 1.2049 1535 | 6/24
41 h-m-p 1.6000 8.0000 0.0001 Y 2911.930255 0 1.6000 1580 | 6/24
42 h-m-p 1.6000 8.0000 0.0000 ----------------.. | 6/24
43 h-m-p 0.0160 8.0000 0.0048 ------------- | 6/24
44 h-m-p 0.0160 8.0000 0.0048 -------------
Out..
lnL = -2911.930255
1752 lfun, 7008 eigenQcodon, 99864 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 21 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -2925.202548 S = -2785.523038 -174.565370
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 230 patterns 1:36
did 20 / 230 patterns 1:36
did 30 / 230 patterns 1:36
did 40 / 230 patterns 1:36
did 50 / 230 patterns 1:36
did 60 / 230 patterns 1:36
did 70 / 230 patterns 1:36
did 80 / 230 patterns 1:36
did 90 / 230 patterns 1:36
did 100 / 230 patterns 1:36
did 110 / 230 patterns 1:36
did 120 / 230 patterns 1:36
did 130 / 230 patterns 1:36
did 140 / 230 patterns 1:36
did 150 / 230 patterns 1:37
did 160 / 230 patterns 1:37
did 170 / 230 patterns 1:37
did 180 / 230 patterns 1:37
did 190 / 230 patterns 1:37
did 200 / 230 patterns 1:37
did 210 / 230 patterns 1:37
did 220 / 230 patterns 1:37
did 230 / 230 patterns 1:37end of tree file.
Time used: 1:37
Model 7: beta
TREE # 1
(1, 2, 5, 7, (((((10, 9), (11, 12, 13), 3), 6), 8), 4)); MP score: 400
0.033689 0.016265 0.018923 0.080277 0.063372 0.046116 0.078647 0.087054 0.080648 0.074733 0.062636 0.032239 0.069046 0.091010 0.062793 0.076975 0.020537 0.074724 0.050038 3.785625 0.353761 1.101151
ntime & nrate & np: 19 1 22
Bounds (np=22):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.005000 0.005000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 99.000000 99.000000
Qfactor_NS = 6.224913
np = 22
lnL0 = -3394.103215
Iterating by ming2
Initial: fx= 3394.103215
x= 0.03369 0.01626 0.01892 0.08028 0.06337 0.04612 0.07865 0.08705 0.08065 0.07473 0.06264 0.03224 0.06905 0.09101 0.06279 0.07698 0.02054 0.07472 0.05004 3.78562 0.35376 1.10115
1 h-m-p 0.0000 0.0001 2759.1612 ++ 3167.573113 m 0.0001 49 | 1/22
2 h-m-p 0.0000 0.0001 953.1587 ++ 3120.528362 m 0.0001 96 | 2/22
3 h-m-p 0.0000 0.0000 1579.2373 ++ 3080.442020 m 0.0000 142 | 3/22
4 h-m-p 0.0000 0.0000 10948.3159 ++ 3078.717089 m 0.0000 187 | 4/22
5 h-m-p 0.0000 0.0000 1524.6349 ++ 3072.248375 m 0.0000 231 | 5/22
6 h-m-p 0.0001 0.0011 205.2086 ++YYCCC 3056.352528 4 0.0007 282 | 5/22
7 h-m-p 0.0000 0.0002 381.3664 +YYYYCC 3051.752580 5 0.0001 331 | 5/22
8 h-m-p 0.0000 0.0001 248.9315 YCYCCC 3050.943855 5 0.0000 381 | 5/22
9 h-m-p 0.0001 0.0005 132.2051 CCCCC 3050.197554 4 0.0001 431 | 5/22
10 h-m-p 0.0006 0.0046 26.7595 YCC 3049.962172 2 0.0004 476 | 5/22
11 h-m-p 0.0005 0.0055 23.5126 +YYCC 3049.182822 3 0.0015 523 | 5/22
12 h-m-p 0.0005 0.0098 76.9290 +YCCC 3043.516802 3 0.0032 571 | 5/22
13 h-m-p 0.0006 0.0028 423.0459 YCCCCC 3031.322201 5 0.0012 622 | 5/22
14 h-m-p 0.0004 0.0018 216.9601 CCCC 3029.475581 3 0.0004 670 | 5/22
15 h-m-p 0.0023 0.0113 21.6890 CCC 3029.317946 2 0.0007 716 | 5/22
16 h-m-p 0.0008 0.0250 19.0297 +CCC 3028.708003 2 0.0036 763 | 5/22
17 h-m-p 0.0005 0.0126 132.2011 +YCCCCC 3022.874599 5 0.0047 815 | 5/22
18 h-m-p 0.0022 0.0112 19.3227 CCC 3022.768582 2 0.0007 861 | 5/22
19 h-m-p 0.0023 0.0316 5.7091 CC 3022.635772 1 0.0020 905 | 5/22
20 h-m-p 0.0016 0.1749 7.3785 +++CCYC 2991.080303 3 0.1395 956 | 5/22
21 h-m-p 0.0194 0.0970 12.3800 +YYYYYCCCC 2977.440917 8 0.0785 1010 | 5/22
22 h-m-p 0.0525 0.3378 18.5303 YYCCC 2967.420971 4 0.0660 1058 | 5/22
23 h-m-p 1.5325 7.6625 0.4190 YCCC 2928.792532 3 3.3924 1105 | 5/22
24 h-m-p 1.0663 5.3315 0.0943 +YYCCCC 2912.150153 5 3.4020 1156 | 5/22
25 h-m-p 1.0483 5.2414 0.1861 CYCCC 2907.120677 4 1.4234 1205 | 5/22
26 h-m-p 1.4796 7.3978 0.1420 CCCC 2902.905151 3 2.1729 1253 | 5/22
27 h-m-p 1.3507 6.7534 0.1354 YCCCC 2899.766541 4 2.5196 1302 | 5/22
28 h-m-p 1.6000 8.0000 0.1520 CYCC 2898.276389 3 2.0065 1349 | 5/22
29 h-m-p 1.6000 8.0000 0.0950 YCCC 2897.639389 3 2.5107 1396 | 5/22
30 h-m-p 1.6000 8.0000 0.0308 CCC 2897.460279 2 2.1613 1442 | 5/22
31 h-m-p 1.2564 8.0000 0.0530 YC 2897.336555 1 2.8638 1485 | 5/22
32 h-m-p 1.6000 8.0000 0.0223 YC 2897.283816 1 3.1996 1528 | 5/22
33 h-m-p 1.6000 8.0000 0.0407 YC 2897.223156 1 3.4288 1571 | 5/22
34 h-m-p 1.6000 8.0000 0.0273 YC 2897.194670 1 2.5891 1614 | 5/22
35 h-m-p 1.6000 8.0000 0.0133 YC 2897.177885 1 2.7117 1657 | 5/22
36 h-m-p 1.6000 8.0000 0.0164 CC 2897.172625 1 2.3759 1701 | 5/22
37 h-m-p 1.6000 8.0000 0.0074 C 2897.172069 0 1.3553 1743 | 5/22
38 h-m-p 1.6000 8.0000 0.0024 YC 2897.171834 1 2.5962 1786 | 5/22
39 h-m-p 1.6000 8.0000 0.0018 Y 2897.171767 0 2.7575 1828 | 5/22
40 h-m-p 1.6000 8.0000 0.0015 +Y 2897.171654 0 4.4547 1871 | 5/22
41 h-m-p 1.6000 8.0000 0.0014 Y 2897.171601 0 2.7740 1913 | 5/22
42 h-m-p 1.6000 8.0000 0.0007 C 2897.171584 0 2.0927 1955 | 5/22
43 h-m-p 1.6000 8.0000 0.0001 Y 2897.171574 0 3.7488 1997 | 5/22
44 h-m-p 1.0260 8.0000 0.0005 +Y 2897.171566 0 2.7671 2040 | 5/22
45 h-m-p 1.6000 8.0000 0.0001 Y 2897.171564 0 3.0496 2082 | 5/22
46 h-m-p 1.6000 8.0000 0.0001 +Y 2897.171562 0 4.4895 2125 | 5/22
47 h-m-p 1.6000 8.0000 0.0002 Y 2897.171559 0 3.3835 2167 | 5/22
48 h-m-p 1.6000 8.0000 0.0004 C 2897.171559 0 1.3280 2209 | 5/22
49 h-m-p 1.6000 8.0000 0.0001 ----------------.. | 5/22
50 h-m-p 0.0030 1.4879 0.0054 ------------
Out..
lnL = -2897.171559
2318 lfun, 25498 eigenQcodon, 440420 P(t)
end of tree file.
Time used: 5:13
Model 8: beta&w>1
TREE # 1
(1, 2, 5, 7, (((((10, 9), (11, 12, 13), 3), 6), 8), 4)); MP score: 400
0.048149 0.095568 0.030967 0.095531 0.055679 0.012719 0.102245 0.061837 0.057434 0.036623 0.030795 0.065450 0.097755 0.033848 0.040407 0.107411 0.084543 0.109200 0.030627 3.677016 0.900000 1.105324 1.803796 1.300000
ntime & nrate & np: 19 2 24
Bounds (np=24):
0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000010 0.005000 0.005000 1.000000
50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 0.999990 99.000000 99.000000 999.000000
Qfactor_NS = 4.583621
np = 24
lnL0 = -3457.590765
Iterating by ming2
Initial: fx= 3457.590765
x= 0.04815 0.09557 0.03097 0.09553 0.05568 0.01272 0.10224 0.06184 0.05743 0.03662 0.03079 0.06545 0.09775 0.03385 0.04041 0.10741 0.08454 0.10920 0.03063 3.67702 0.90000 1.10532 1.80380 1.30000
1 h-m-p 0.0000 0.0001 2653.2691 ++ 3133.050282 m 0.0001 53 | 1/24
2 h-m-p 0.0000 0.0000 728.7093 ++ 3122.700321 m 0.0000 104 | 2/24
3 h-m-p 0.0000 0.0000 18453.1449 ++ 3118.097831 m 0.0000 154 | 3/24
4 h-m-p 0.0000 0.0000 173831.8020 ++ 3107.222441 m 0.0000 203 | 4/24
5 h-m-p 0.0000 0.0001 1371.9316 ++ 3076.754590 m 0.0001 251 | 5/24
6 h-m-p 0.0000 0.0001 584.2210 ++ 3063.671741 m 0.0001 298 | 6/24
7 h-m-p 0.0000 0.0002 395.1855 +YYYYCYCYC 3054.705694 8 0.0001 356 | 6/24
8 h-m-p 0.0001 0.0007 423.2100 +YYCCCC 3039.079957 5 0.0004 410 | 6/24
9 h-m-p 0.0007 0.0034 227.4954 +YYCCCCC 3007.141086 6 0.0021 466 | 6/24
10 h-m-p 0.0000 0.0001 1933.2178 +YYCCC 2996.426385 4 0.0001 518 | 6/24
11 h-m-p 0.0002 0.0008 486.7791 CCCCC 2991.632881 4 0.0002 571 | 6/24
12 h-m-p 0.0003 0.0015 54.4775 YCCC 2990.707401 3 0.0006 621 | 6/24
13 h-m-p 0.0003 0.0014 49.5786 YCYCC 2989.912854 4 0.0007 672 | 6/24
14 h-m-p 0.0002 0.0010 84.1022 +YYCCCC 2988.966993 5 0.0006 726 | 6/24
15 h-m-p 0.0002 0.0028 216.4640 +YYC 2986.549260 2 0.0008 774 | 6/24
16 h-m-p 0.0009 0.0045 92.2034 CCCC 2985.833855 3 0.0007 825 | 6/24
17 h-m-p 0.0038 0.0480 16.3440 +YYYY 2983.679988 3 0.0153 874 | 6/24
18 h-m-p 0.0034 0.0245 72.6597 YCCC 2980.526056 3 0.0057 924 | 6/24
19 h-m-p 0.0016 0.0082 172.1329 YYC 2978.800303 2 0.0014 971 | 6/24
20 h-m-p 0.0047 0.0233 32.5210 CCC 2977.898543 2 0.0046 1020 | 6/24
21 h-m-p 0.0323 0.6945 4.6069 +CCCCC 2974.166274 4 0.1498 1074 | 6/24
22 h-m-p 0.2120 1.0602 1.1847 +YYYYCCCCC 2953.832263 8 0.8716 1132 | 6/24
23 h-m-p 0.4621 2.3105 0.7254 YCCCC 2943.445925 4 0.9319 1184 | 6/24
24 h-m-p 0.3952 1.9760 0.8845 YCCCCC 2930.969784 5 0.8582 1238 | 6/24
25 h-m-p 1.3296 6.6479 0.4764 CCCC 2920.223507 3 1.2233 1289 | 6/24
26 h-m-p 0.8894 4.4468 0.2336 +YYYCCC 2906.984502 5 3.2732 1342 | 6/24
27 h-m-p 0.5828 2.9138 1.1354 CCCC 2902.813065 3 0.8010 1393 | 6/24
28 h-m-p 1.6000 8.0000 0.2918 CYCCC 2901.142950 4 1.3187 1445 | 6/24
29 h-m-p 0.8757 4.3786 0.3688 YCCCC 2899.168299 4 2.0994 1497 | 6/24
30 h-m-p 1.6000 8.0000 0.2357 CCC 2898.283377 2 1.4826 1546 | 6/24
31 h-m-p 1.6000 8.0000 0.0732 YCCC 2897.901141 3 2.7531 1596 | 6/24
32 h-m-p 1.6000 8.0000 0.0760 YCC 2897.684101 2 2.5772 1644 | 6/24
33 h-m-p 1.3381 8.0000 0.1464 CYC 2897.597652 2 1.3981 1692 | 6/24
34 h-m-p 1.6000 8.0000 0.0673 YC 2897.480082 1 3.1871 1738 | 6/24
35 h-m-p 1.6000 8.0000 0.0527 YC 2897.382899 1 3.8359 1784 | 6/24
36 h-m-p 1.6000 8.0000 0.0540 YC 2897.282842 1 3.4441 1830 | 6/24
37 h-m-p 1.6000 8.0000 0.0385 YC 2897.213870 1 3.4497 1876 | 6/24
38 h-m-p 1.6000 8.0000 0.0578 CC 2897.178596 1 1.9812 1923 | 6/24
39 h-m-p 1.6000 8.0000 0.0120 C 2897.174813 0 1.6185 1968 | 6/24
40 h-m-p 1.6000 8.0000 0.0082 C 2897.174356 0 1.6045 2013 | 6/24
41 h-m-p 1.6000 8.0000 0.0007 C 2897.174343 0 1.3545 2058 | 6/24
42 h-m-p 1.6000 8.0000 0.0004 C 2897.174341 0 2.0616 2103 | 6/24
43 h-m-p 1.6000 8.0000 0.0001 Y 2897.174341 0 2.5974 2148 | 6/24
44 h-m-p 1.6000 8.0000 0.0001 C 2897.174340 0 1.6000 2193 | 6/24
45 h-m-p 1.6000 8.0000 0.0000 Y 2897.174340 0 1.6000 2238 | 6/24
46 h-m-p 1.6000 8.0000 0.0000 C 2897.174340 0 1.6000 2283 | 6/24
47 h-m-p 1.6000 8.0000 0.0000 -Y 2897.174340 0 0.1000 2329 | 6/24
48 h-m-p 0.0175 8.0000 0.0001 -------------.. | 6/24
49 h-m-p 0.0099 4.9712 0.0011 -------------
Out..
lnL = -2897.174340
2442 lfun, 29304 eigenQcodon, 510378 P(t)
BEBing (dim = 4). This may take several minutes.
Calculating f(x_h|w): 10 categories 20 w sets.
Calculating f(X), the marginal likelihood.
log(fX) = -2922.233103 S = -2792.328407 -150.352372
Calculating f(w|X), posterior probabilities of site classes.
did 10 / 230 patterns 9:22
did 20 / 230 patterns 9:22
did 30 / 230 patterns 9:23
did 40 / 230 patterns 9:23
did 50 / 230 patterns 9:23
did 60 / 230 patterns 9:23
did 70 / 230 patterns 9:23
did 80 / 230 patterns 9:24
did 90 / 230 patterns 9:24
did 100 / 230 patterns 9:24
did 110 / 230 patterns 9:24
did 120 / 230 patterns 9:24
did 130 / 230 patterns 9:25
did 140 / 230 patterns 9:25
did 150 / 230 patterns 9:25
did 160 / 230 patterns 9:25
did 170 / 230 patterns 9:25
did 180 / 230 patterns 9:26
did 190 / 230 patterns 9:26
did 200 / 230 patterns 9:26
did 210 / 230 patterns 9:26
did 220 / 230 patterns 9:26
did 230 / 230 patterns 9:27end of tree file.
Time used: 9:27
The loglikelihoods for models M1, M2, M7 and M8 are -2911.930255 -2911.930255 -2897.171559 -2897.174340 respectively
CLUSTAL W (1.8) multiple sequence alignment (ALTER 1.3.3)
171_1ab_VIPR_ALG1_422313312_9901_10782_1_1971_Germany_Dog_Alphacoronavirus_1 ---SGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITTLVSVLLVAGI
79_1146_ORF_1a_1b_VIPR_P_62836706_9926_10807_1_NA_USA_Unknown_Alphacoronavirus_1 ---SGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITTLVSVLLVAGI
A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1 ---AGKVTSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTTLISTVFVSGI
Black_1_VIPR_P_161213709_9897_10775_1_NA_USA_Unknown_Alphacoronavirus_1 ----GKVKSLFYPVMTAIAILFAFWLEFFMYTPFTWINPTFVSIILAITTLVSVLLVAGI
DF_2_NA_VIPR_P_87242672_9926_10801_1_NA_NA_Unknown_Alphacoronavirus_1 ---SGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITTLVSVLLVAGI
FCoV_C1Je_NA_VIPR_ALG1_112253725_9878_10759_1_NA_NA_Unknown_Alphacoronavirus_1 ---SGKVKSLFYPMMTAVAILFSFWLEFFMYTPFTWINPSFVSVILAITTIFSVLLVAGI
FIPV_79_1146_NA_VIPR_ALG1_63098798_9687_10577_1_NA_NA_Cat_Alphacoronavirus_1 NLQSGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITTLVSVLLVAGI
Felis_catus_NLD_UU88_2010_Pp1ab_VIPR_ALG1_530803158_9741_10622_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 ---SGKVKSLFYPVMTAMAILFAFWLEFFMYTPFTWINPTFVSAILAITTLVSVMLVAGI
K378_1ab_VIPR_ALG1_422313320_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1 ---AGKVKSFFYPIVTAMTILFAFWLEFFMYTPFTWINPAFVSFVLAVTTLVSTVFVSGI
S378_1ab_VIPR_ALG1_422313331_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1 ---AGKVKSFFYPIVTAMTILFAFWLEFFMYTPFTWINPAFVSFVLAVTTLVSTVFVSGI
UNKNOWN_AX154950_NA_VIPR_P_14536504_9855_10736_1_NA_NA_Unknown_Alphacoronavirus_1 ---AGKVKSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTTLISTVFVSGI
partially_attenuated_Miller_M60_NA_VIPR_P_110746810_9830_10711_1_1987_USA_Swine_Alphacoronavirus_1 ---AGKVKSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTTLISTFFVSGI
virulent_Purdue_NA_VIPR_P_110746837_9848_10729_1_1952_USA_Swine_Alphacoronavirus_1 ----------FYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTTLISTVFVSGI
***::**::***:****************:*** :**:**:.*..:*:**
171_1ab_VIPR_ALG1_422313312_9901_10782_1_1971_Germany_Dog_Alphacoronavirus_1 KHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENVNTTFLPVDMQGVMLALFCVV
79_1146_ORF_1a_1b_VIPR_P_62836706_9926_10807_1_NA_USA_Unknown_Alphacoronavirus_1 KHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENVNTTFLPVDMQGVMLALFCVV
A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1 KHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFI
Black_1_VIPR_P_161213709_9897_10775_1_NA_USA_Unknown_Alphacoronavirus_1 KHKMLFFMSFVMPSVVLATAHNFVWDMTCYESLQVLVENVNTTFLPVDMQGVMLALFCVA
DF_2_NA_VIPR_P_87242672_9926_10801_1_NA_NA_Unknown_Alphacoronavirus_1 KHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENVNTTFLPVDMQGVMLHWSVCV
FCoV_C1Je_NA_VIPR_ALG1_112253725_9878_10759_1_NA_NA_Unknown_Alphacoronavirus_1 KHKMLFFMSFVMPSVVLSTVHNVVWDMTYYESLQVLVENTNTTFLPVDMQGVMLALFCVV
FIPV_79_1146_NA_VIPR_ALG1_63098798_9687_10577_1_NA_NA_Cat_Alphacoronavirus_1 KHKMLFFMSFVMPSVILVTAHNVVWDMTYYESLQVLVENVNTTFLPVDMQGVMLALFCVV
Felis_catus_NLD_UU88_2010_Pp1ab_VIPR_ALG1_530803158_9741_10622_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 KHKMLFFMSFVMPSVVLATVHNVVWDMTYYESLQVLVENVNTTFLPVDMQGVMLALFCVV
K378_1ab_VIPR_ALG1_422313320_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1 KHKMLFFMSFVLPSVVLVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFI
S378_1ab_VIPR_ALG1_422313331_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1 KHKMLFFMSFVLPSVVLVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFI
UNKNOWN_AX154950_NA_VIPR_P_14536504_9855_10736_1_NA_NA_Unknown_Alphacoronavirus_1 KHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFI
partially_attenuated_Miller_M60_NA_VIPR_P_110746810_9830_10711_1_1987_USA_Swine_Alphacoronavirus_1 KHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFI
virulent_Purdue_NA_VIPR_P_110746837_9848_10729_1_1952_USA_Swine_Alphacoronavirus_1 KHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFI
***********:***:* *.**..**:: ***** :***.** ***********
171_1ab_VIPR_ALG1_422313312_9901_10782_1_1971_Germany_Dog_Alphacoronavirus_1 VFVICTIRFFTCKQSWFSLFATTIFVMFNIVKLLGMIGEPWTDDHFLLCLVNMLTMLISL
79_1146_ORF_1a_1b_VIPR_P_62836706_9926_10807_1_NA_USA_Unknown_Alphacoronavirus_1 VFVICTIRFFTCKQSWFSLFATTIFVMFNIVKLLGMIGEPWTDDHFLLCLVNMLTMLISL
A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1 VFVTYSVRFFTCKQSWFSLAVTTVLVIFNMVKIFGTSDEPWTENQIAFCFVNMLTMIVSL
Black_1_VIPR_P_161213709_9897_10775_1_NA_USA_Unknown_Alphacoronavirus_1 VFVTYTIRFFTCKQSWFSLFATTVFVMFNIVKLLGMIGEPWTDDYILLCLVNMLTMLISL
DF_2_NA_VIPR_P_87242672_9926_10801_1_NA_NA_Unknown_Alphacoronavirus_1 LYMHY--KIFTCKQSWFSLFATTIFVMFNIVKLLGMIGEPWTDDHFLLCLVNMLTMLISL
FCoV_C1Je_NA_VIPR_ALG1_112253725_9878_10759_1_NA_NA_Unknown_Alphacoronavirus_1 VFVTYTIRFFTCKQSWFSLFVTTVFVVFNIVKLLGMVGEPWTENHILLCLVNMLTMLISL
FIPV_79_1146_NA_VIPR_ALG1_63098798_9687_10577_1_NA_NA_Cat_Alphacoronavirus_1 VFVICTIRFFTCKQSWFSLFATTIFVMFNIVKLLGMIGEPWTDDHFLLCLVNMLTMLISL
Felis_catus_NLD_UU88_2010_Pp1ab_VIPR_ALG1_530803158_9741_10622_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 VFVTYTIRFFTCKQSWFSLFVTTVFVVFNIVKLLGMVGEPWTEDHILLCLVNMLTMLISL
K378_1ab_VIPR_ALG1_422313320_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1 VFVTYSVRFFTCKQSWFSLAVTTVLVIFNMFKIFGTSDEPWTENQIAFCFVNMLTMIVSL
S378_1ab_VIPR_ALG1_422313331_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1 VFVTYSVRFFTCKQSWFSLAVTTVLVIFNMFKIFGTSDEPWTENQIAFCFVNMLTMIVSL
UNKNOWN_AX154950_NA_VIPR_P_14536504_9855_10736_1_NA_NA_Unknown_Alphacoronavirus_1 VFVTYSVRFFTCKQSWFSLAVTTILVIFNMVKIFGTSDEPWTENQIAFCFVNMLTMIVSL
partially_attenuated_Miller_M60_NA_VIPR_P_110746810_9830_10711_1_1987_USA_Swine_Alphacoronavirus_1 VFVTYSVRFFTCKQSWFSLAVTTILVIFNMVKIFGTSDEPWTENQIAFCFVNMLTMIVSL
virulent_Purdue_NA_VIPR_P_110746837_9848_10729_1_1952_USA_Swine_Alphacoronavirus_1 VFVTYSVRFFTCKQSWFSLAVTTILVIFNMVKIFGTSDEPWTENQIAFCFVNMLTMIVSL
::: ::********** .**::*:**:.*::* .****:: : :*:******::**
171_1ab_VIPR_ALG1_422313312_9901_10782_1_1971_Germany_Dog_Alphacoronavirus_1 TTKDWFVVFASYKVAYYIVVYVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNR
79_1146_ORF_1a_1b_VIPR_P_62836706_9926_10807_1_NA_USA_Unknown_Alphacoronavirus_1 TTKDWFVVFASYKVAYYIVVYVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNR
A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1 TTKDWMVVVASYRIAYYIVVCVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNR
Black_1_VIPR_P_161213709_9897_10775_1_NA_USA_Unknown_Alphacoronavirus_1 TTKDWFVVFVSYKFAYYIVVYVMQPAFVQDFGFVKCISIIYMACGYLFCCYYGILYWVNR
DF_2_NA_VIPR_P_87242672_9926_10801_1_NA_NA_Unknown_Alphacoronavirus_1 TTKDWFVVFASYKVAFYIVVYVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNR
FCoV_C1Je_NA_VIPR_ALG1_112253725_9878_10759_1_NA_NA_Unknown_Alphacoronavirus_1 TTKDWFVVFVSYKFAYYVVVYVMQPSFVYDFGFVKCISIIYMACGYLFCCYYGILYWVNR
FIPV_79_1146_NA_VIPR_ALG1_63098798_9687_10577_1_NA_NA_Cat_Alphacoronavirus_1 TTKDWFVVFASYKVAYYIVVYVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNR
Felis_catus_NLD_UU88_2010_Pp1ab_VIPR_ALG1_530803158_9741_10622_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 TTKDWFVVFASYKFAYYIVVYVMQPAFVQDFGFVKCVSIIYMACGYIFCCYYGILYWVNR
K378_1ab_VIPR_ALG1_422313320_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1 TTKDWVVVVASYRVAYYIVVCVMPAAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNR
S378_1ab_VIPR_ALG1_422313331_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1 TTKDWVVVVASYRVAYYIVVCVMPAAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNR
UNKNOWN_AX154950_NA_VIPR_P_14536504_9855_10736_1_NA_NA_Unknown_Alphacoronavirus_1 TTKDWMVVIASYRIAYYIVVCVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNR
partially_attenuated_Miller_M60_NA_VIPR_P_110746810_9830_10711_1_1987_USA_Swine_Alphacoronavirus_1 TTKDWMVVVASYRIAYYIVVCVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNR
virulent_Purdue_NA_VIPR_P_110746837_9848_10729_1_1952_USA_Swine_Alphacoronavirus_1 TTKDWMVVVASYRIAYYIVVCVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNR
*****.**..**:.*:*:** ** .:** ****:**:**:******:*************
171_1ab_VIPR_ALG1_422313312_9901_10782_1_1971_Germany_Dog_Alphacoronavirus_1 FTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ---
79_1146_ORF_1a_1b_VIPR_P_62836706_9926_10807_1_NA_USA_Unknown_Alphacoronavirus_1 FTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ---
A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1 FTCMTCGVYQFTVSAAELKYMTANNLSAPRNAYDAMILSAKLIGVGGKRNIKISTVQ---
Black_1_VIPR_P_161213709_9897_10775_1_NA_USA_Unknown_Alphacoronavirus_1 FTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGERNIKISTVQ---
DF_2_NA_VIPR_P_87242672_9926_10801_1_NA_NA_Unknown_Alphacoronavirus_1 FTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ---
FCoV_C1Je_NA_VIPR_ALG1_112253725_9878_10759_1_NA_NA_Unknown_Alphacoronavirus_1 FTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSVKLMGIGGERNIKISTVQ---
FIPV_79_1146_NA_VIPR_ALG1_63098798_9687_10577_1_NA_NA_Cat_Alphacoronavirus_1 FTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ---
Felis_catus_NLD_UU88_2010_Pp1ab_VIPR_ALG1_530803158_9741_10622_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 FTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSVKLMGIGGERNIKISTVQ---
K378_1ab_VIPR_ALG1_422313320_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1 FTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ---
S378_1ab_VIPR_ALG1_422313331_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1 FTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ---
UNKNOWN_AX154950_NA_VIPR_P_14536504_9855_10736_1_NA_NA_Unknown_Alphacoronavirus_1 FTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ---
partially_attenuated_Miller_M60_NA_VIPR_P_110746810_9830_10711_1_1987_USA_Swine_Alphacoronavirus_1 FTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ---
virulent_Purdue_NA_VIPR_P_110746837_9848_10729_1_1952_USA_Swine_Alphacoronavirus_1 FTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQSKL
**************.**************:.******** **:*:** *********
171_1ab_VIPR_ALG1_422313312_9901_10782_1_1971_Germany_Dog_Alphacoronavirus_1 ---
79_1146_ORF_1a_1b_VIPR_P_62836706_9926_10807_1_NA_USA_Unknown_Alphacoronavirus_1 ---
A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1 ---
Black_1_VIPR_P_161213709_9897_10775_1_NA_USA_Unknown_Alphacoronavirus_1 ---
DF_2_NA_VIPR_P_87242672_9926_10801_1_NA_NA_Unknown_Alphacoronavirus_1 ---
FCoV_C1Je_NA_VIPR_ALG1_112253725_9878_10759_1_NA_NA_Unknown_Alphacoronavirus_1 ---
FIPV_79_1146_NA_VIPR_ALG1_63098798_9687_10577_1_NA_NA_Cat_Alphacoronavirus_1 ---
Felis_catus_NLD_UU88_2010_Pp1ab_VIPR_ALG1_530803158_9741_10622_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 ---
K378_1ab_VIPR_ALG1_422313320_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1 ---
S378_1ab_VIPR_ALG1_422313331_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1 ---
UNKNOWN_AX154950_NA_VIPR_P_14536504_9855_10736_1_NA_NA_Unknown_Alphacoronavirus_1 ---
partially_attenuated_Miller_M60_NA_VIPR_P_110746810_9830_10711_1_1987_USA_Swine_Alphacoronavirus_1 ---
virulent_Purdue_NA_VIPR_P_110746837_9848_10729_1_1952_USA_Swine_Alphacoronavirus_1 TEM
>171_1ab_VIPR_ALG1_422313312_9901_10782_1_1971_Germany_Dog_Alphacoronavirus_1 ---------AGTGGTAAAGTGAAATCGATATTTTACCCTATGATGACTGCCATTGCCATTCTTTTTGCATTCTGGTTAGAATTCTTCATGTATACACCCTTCACATGGATTAACCCGACATTTGTTAGTGTTGTTCTAGCTATTACAACACTTGTATCTGTGTTGTTAGTTGCTGGAATTAAACACAAAATGTTGTTCTTTATGTCTTTTGTGATGCCTAGTGTTATTTTAGCTACTGCACATAATGTGGTCTGGGATATGACCTATTATGAAAGTTTACAGGTGCTTGTGGAAAACGTTAATACCACTTTCTTACCAGTCGATATGCAGGGTGTCATGCTTGCACTGTTCTGTGTTGTTGTGTTTGTTATATGCACTATAAGATTTTTTACATGCAAGCAGTCGTGGTTTTCACTGTTTGCAACAACTATTTTTGTGATGTTTAACATTGTCAAGTTACTAGGTATGATAGGTGAGCCATGGACTGATGACCACTTTTTGTTGTGTCTTGTAAACATGCTTACTATGTTGATAAGTCTTACTACAAAGGATTGGTTTGTTGTCTTTGCATCATACAAAGTTGCTTATTACATAGTTGTGTATGTAATGCAGCCAGCTTTTGTTCAAGATTTTGGCTTTGTTAAGTGCGTAAGCATAATTTACATGGCTTGCGGTTATCTATTCTGTTGTTATTACGGTATCCTTTACTGGGTTAACAGGTTTACATGCATGACGTGTGGTGTTTACCAATTTACGGTTTCACCGGCCGAGCTCAAATACATGACTGCTAATAATTTGTCTGCACCTAAGACTGCATATGATGCTATGATTCTTAGTTTTAAGTTGATGGGCATTGGTGGAGGACGTAATATCAAAATATCCACTGTGCAG------------------ >79_1146_ORF_1a_1b_VIPR_P_62836706_9926_10807_1_NA_USA_Unknown_Alphacoronavirus_1 ---------AGTGGTAAAGTGAAATCGATATTTTACCCTATGATGACTGCCATTGCCATTCTTTTTGCATTCTGGTTAGAATTCTTCATGTATACACCCTTCACATGGATTAACCCGACATTTGTTAGTGTTGTTCTAGCTATTACAACACTTGTATCTGTGTTGTTAGTTGCTGGAATTAAACACAAAATGTTGTTCTTTATGTCTTTTGTGATGCCTAGTGTTATTTTAGCTACTGCACATAATGTGGTCTGGGATATGACCTATTATGAAAGTTTACAGGTGCTTGTGGAAAACGTTAATACCACTTTCTTACCAGTCGATATGCAGGGTGTCATGCTTGCACTGTTCTGTGTTGTTGTGTTTGTTATATGCACTATAAGATTTTTTACATGCAAGCAGTCGTGGTTTTCACTGTTTGCAACAACTATTTTTGTGATGTTTAACATTGTCAAGTTACTAGGTATGATAGGTGAGCCATGGACTGATGACCACTTTTTGTTGTGTCTTGTAAACATGCTTACTATGTTGATAAGTCTTACTACAAAGGATTGGTTTGTTGTCTTTGCATCATACAAAGTTGCTTATTACATAGTTGTGTATGTAATGCAGCCAGCTTTTGTTCAAGATTTTGGCTTTGTTAAGTGCGTAAGCATAATTTACATGGCTTGCGGTTATCTATTCTGTTGTTATTACGGTATCCTTTACTGGGTTAACAGGTTTACATGCATGACGTGTGGTGTTTACCAATTTACGGTTTCACCGGCCGAGCTCAAATACATGACTGCTAATAATTTGTCTGCACCTAAGACTGCATATGATGCTATGATTCTTAGTTTTAAGTTGATGGGCATTGGTGGAGGACGTAATATCAAAATATCCACTGTGCAG------------------ >A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1 ---------GCTGGTAAAGTAACATCTTTCTTTTACCCTATTATGACTGCAATGACAATTCTCTTCGCATTCTGGCTTGAATTCTTTATGTACACACCCTTTACATGGATTAATCCAACTTTTGTTAGCATTGTATTGGCTGTCACAACTTTGATCTCGACGGTTTTTGTCTCAGGAATTAAACATAAGATGTTGTTCTTCATGTCTTTTGTTCTTCCTAGTGTTATTCTTGTGACTGCACACAATTTGTTCTGGGACTTTTCTTACTACGAAAGTCTTCAGTCAATTGTTGAGAATACTAACACTATGTTCTTGCCTGTTGACATGCAAGGCGTCATGTTAACAGTGTTTTGCTTCATTGTCTTTGTTACATACAGTGTTAGATTCTTTACTTGTAAACAGTCATGGTTCTCACTTGCTGTGACAACTGTTCTTGTGATCTTTAACATGGTTAAAATCTTTGGAACATCGGATGAACCATGGACTGAAAATCAAATTGCTTTCTGCTTTGTGAACATGCTTACTATGATTGTCAGTCTTACTACAAAGGATTGGATGGTTGTCGTTGCATCATACAGAATTGCTTACTATATTGTTGTATGTGTAATGCCGTCTGCTTTTGTATCTGACTTCGGTTTTATGAAGTGTATTAGCATTGTTTACATGGCGTGTGGTTATTTGTTTTGTTGCTATTATGGTATCCTCTATTGGGTTAACAGATTTACATGCATGACTTGTGGTGTTTATCAATTCACTGTGTCTGCAGCTGAACTTAAATACATGACTGCTAACAACCTTTCTGCACCTAGGAACGCATATGATGCTATGATTCTTAGTGCTAAATTGATTGGTGTTGGAGGTAAGAGAAACATTAAAATTTCAACTGTACAG------------------ >Black_1_VIPR_P_161213709_9897_10775_1_NA_USA_Unknown_Alphacoronavirus_1 ------------GGTAAAGTGAAATCGCTATTTTACCCTGTGATGACTGCCATTGCCATTCTTTTTGCATTTTGGTTAGAATTTTTCATGTATACACCCTTCACATGGATTAACCCGACATTTGTTAGTATTATTCTAGCTATTACAACACTTGTGTCTGTGTTATTAGTTGCTGGAATTAAGCACAAAATGTTGTTCTTTATGTCTTTTGTGATGCCTAGTGTCGTTTTAGCTACTGCACACAATTTTGTCTGGGACATGACCTGTTATGAAAGTTTACAGGTCCTTGTGGAAAATGTTAATACAACTTTCTTACCAGTTGATATGCAAGGTGTCATGCTTGCACTTTTCTGTGTTGCTGTGTTTGTTACATACACTATAAGATTTTTTACATGCAAGCAGTCGTGGTTTTCACTATTTGCAACAACTGTTTTTGTGATGTTTAACATTGTTAAGTTACTAGGTATGATAGGTGAGCCATGGACTGATGACTACATTTTGTTATGTCTTGTAAACATGCTTACTATGTTGATAAGTCTTACTACAAAAGATTGGTTTGTTGTCTTTGTATCATATAAATTTGCTTATTACATAGTTGTGTATGTAATGCAGCCAGCTTTTGTTCAAGATTTTGGTTTTGTTAAGTGCATAAGCATAATTTACATGGCTTGCGGTTACCTATTCTGTTGTTATTACGGCATCCTTTACTGGGTTAACAGGTTTACATGCATGACGTGTGGTGTTTACCAATTTACGGTTTCACCAGCTGAGCTCAAATACATGACTGCTAATAATTTGTCTGCACCTAAGACTGCATATGATGCTATGATTCTTAGTTTTAAGTTGATGGGCATTGGTGGAGAACGTAATATCAAAATATCCACTGTGCAG------------------ >DF_2_NA_VIPR_P_87242672_9926_10801_1_NA_NA_Unknown_Alphacoronavirus_1 ---------AGTGGTAAAGTGAAATCGATATTTTACCCTATGATGACTGCCATTGCCATTCTTTTTGCATTCTGGTTAGAATTCTTCATGTATACACCCTTCACATGGATTAACCCGACATTTGTTAGTGTTGTTCTAGCTATTACAACACTTGTATCTGTGTTGTTAGTTGCTGGAATTAAACACAAAATGTTGTTCTTTATGTCTTTTGTGATGCCTAGTGTTATTTTAGCTACTGCACATAATGTGGTCTGGGATATGACCTATTATGAAAGTTTACAGGTGCTTGTGGAAAACGTTAATACCACTTTCTTACCAGTCGATATGCAGGGTGTCATGCTGCACTGGTCTGTGTGTGTGTTGTATATGCACTAT------AAGATTTTTACATGCAAGCAGTCGTGGTTTTCACTGTTTGCAACAACTATTTTTGTGATGTTTAACATTGTCAAGTTACTAGGTATGATAGGTGAGCCATGGACTGATGACCACTTTTTGTTGTGTCTTGTAAACATGCTTACTATGTTGATAAGTCTTACTACAAAGGATTGGTTTGTTGTCTTTGCATCATACAAAGTTGCTTTTTACATAGTTGTGTATGTAATGCAGCCAGCTTTTGTTCAAGATTTTGGCTTTGTTAAGTGCGTAAGCATAATTTACATGGCTTGCGGTTATCTATTCTGTTGTTATTACGGTATCCTTTACTGGGTTAACAGGTTTACATGCATGACGTGTGGTGTTTACCAATTTACGGTTTCACCGGCCGAGCTCAAATACATGACTGCTAATAATTTGTCTGCACCTAAGACTGCATATGATGCTATGATTCTTAGTTTTAAGTTGATGGGCATTGGTGGAGGACGTAATATCAAAATATCCACTGTGCAG------------------ >FCoV_C1Je_NA_VIPR_ALG1_112253725_9878_10759_1_NA_NA_Unknown_Alphacoronavirus_1 ---------AGTGGTAAAGTAAAATCACTCTTTTACCCTATGATGACCGCTGTGGCTATTCTTTTTTCTTTTTGGTTAGAGTTTTTTATGTATACACCCTTTACATGGATTAATCCATCATTTGTTAGCGTTATTCTAGCTATTACAACCATTTTCTCTGTGTTATTAGTAGCAGGAATTAAGCACAAAATGTTGTTCTTTATGTCCTTTGTAATGCCTAGTGTTGTTTTGTCCACTGTTCATAATGTTGTATGGGATATGACTTATTATGAAAGCTTACAAGTTTTAGTGGAGAACACCAACACAACCTTTTTACCAGTTGATATGCAGGGTGTCATGCTTGCCTTGTTCTGTGTCGTTGTATTTGTCACATACACTATAAGATTCTTTACATGCAAGCAATCCTGGTTCTCATTATTTGTAACAACTGTTTTTGTGGTGTTCAACATTGTTAAGTTACTAGGCATGGTGGGCGAACCATGGACTGAAAACCACATTCTTTTATGTCTTGTAAACATGCTTACCATGTTGATAAGTCTTACTACAAAGGATTGGTTTGTCGTTTTTGTATCATATAAATTTGCTTATTATGTAGTCGTGTATGTAATGCAACCATCCTTTGTTTATGACTTTGGGTTTGTTAAGTGTATAAGTATAATTTACATGGCATGTGGTTATTTGTTCTGTTGTTATTATGGTATTCTTTACTGGGTTAACAGATTTACATGCATGACGTGTGGTGTTTACCAATTCACTGTCTCACCAGCAGAGCTCAAATACATGACTGCCAACAATTTGTCAGCACCTAAGACCGCATATGATGCCATGATTCTTAGTGTTAAATTGATGGGCATTGGTGGAGAAAGAAATATAAAAATCTCTACTGTACAG------------------ >FIPV_79_1146_NA_VIPR_ALG1_63098798_9687_10577_1_NA_NA_Cat_Alphacoronavirus_1 AATCTTCAGAGTGGTAAAGTGAAATCGATATTTTACCCTATGATGACTGCCATTGCCATTCTTTTTGCATTCTGGTTAGAATTCTTCATGTATACACCCTTCACATGGATTAACCCGACATTTGTTAGTGTTGTTCTAGCTATTACAACACTTGTATCTGTGTTGTTAGTTGCTGGAATTAAACACAAAATGTTGTTCTTTATGTCTTTTGTGATGCCTAGTGTTATTTTAGTTACTGCACATAATGTGGTCTGGGATATGACCTATTATGAAAGTTTACAGGTGCTTGTGGAAAACGTTAATACCACTTTCTTACCAGTCGATATGCAGGGTGTCATGCTTGCACTGTTCTGTGTAGTTGTGTTTGTTATATGCACTATAAGATTTTTTACATGCAAGCAGTCGTGGTTTTCACTGTTTGCAACAACTATTTTTGTGATGTTTAACATTGTCAAGTTACTAGGTATGATAGGTGAGCCATGGACTGATGACCACTTTTTGTTGTGTCTTGTAAACATGCTTACTATGTTGATAAGTCTTACTACAAAGGATTGGTTTGTTGTCTTTGCATCATACAAAGTTGCTTATTACATAGTTGTGTATGTAATGCAGCCAGCTTTTGTTCAAGATTTTGGCTTTGTTAAGTGCGTAAGCATAATTTACATGGCTTGCGGTTATCTATTCTGTTGTTATTACGGTATCCTTTACTGGGTTAACAGGTTTACATGCATGACGTGTGGTGTTTACCAATTTACGGTTTCACCGGCCGAGCTCAAATACATGACTGCTAATAATTTGTCTGCACCTAAGACTGCATATGATGCTATGATTCTTAGTTTTAAGTTGATGGGCATTGGTGGAGGACGTAATATCAAAATATCCACTGTGCAG------------------ >Felis_catus_NLD_UU88_2010_Pp1ab_VIPR_ALG1_530803158_9741_10622_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 ---------AGTGGTAAAGTGAAATCACTATTTTACCCTGTGATGACTGCCATGGCTATTCTTTTCGCATTCTGGTTAGAATTTTTCATGTACACACCCTTTACGTGGATTAATCCAACATTTGTTAGTGCTATTCTCGCTATTACAACGCTCGTATCTGTGATGTTAGTTGCTGGAATTAAGCACAAAATGTTGTTCTTTATGTCATTTGTAATGCCTAGTGTTGTTTTAGCTACTGTACATAATGTGGTCTGGGATATGACCTATTATGAAAGTTTACAGGTTCTTGTAGAAAATGTTAACACCACCTTCTTACCAGTTGACATGCAGGGTGTTATGCTTGCACTGTTCTGTGTTGTTGTGTTTGTTACATACACTATAAGATTTTTTACGTGTAAACAATCATGGTTTTCATTGTTTGTAACAACTGTTTTTGTGGTGTTTAACATTGTTAAATTACTAGGTATGGTAGGTGAACCGTGGACTGAAGATCATATCTTGCTGTGTCTTGTAAACATGCTTACCATGTTGATAAGTCTTACTACAAAGGACTGGTTTGTTGTTTTTGCATCATACAAATTTGCTTATTATATAGTTGTATATGTAATGCAGCCAGCTTTTGTTCAAGATTTTGGTTTTGTCAAGTGTGTAAGCATAATTTACATGGCTTGTGGTTACATTTTCTGTTGTTATTATGGTATTCTTTACTGGGTTAACAGGTTTACATGCATGACGTGTGGTGTTTACCAATTTACGGTTTCACCGGCTGAGCTTAAATACATGACTGCCAATAATTTGTCTGCACCTAAGACTGCATATGATGCTATGATTCTTAGTGTTAAGTTGATGGGCATTGGTGGAGAGAGAAATATCAAAATCTCCACTGTGCAG------------------ >K378_1ab_VIPR_ALG1_422313320_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1 ---------GCTGGTAAAGTAAAATCTTTCTTTTACCCTATTGTGACTGCAATGACAATTCTCTTTGCTTTTTGGCTTGAATTTTTCATGTACACACCCTTTACTTGGATTAACCCAGCTTTTGTTAGCTTTGTATTGGCTGTTACAACTTTGGTTTCGACTGTTTTTGTTTCAGGAATTAAACATAAGATGTTGTTCTTTATGTCTTTTGTTCTGCCTAGCGTTGTTCTTGTAACAGCACACAACTTATTCTGGGACTTTTCTTACTATGAAAGTCTTCAGTCAATTGTTGAAAATACTAACACTATGTTCTTGCCTGTTGACATGCAAGGTGTCATGCTCACAGTGTTTTGTTTTATTGTCTTTGTCACATACAGTGTTAGATTCTTCACTTGTAAACAATCATGGTTCTCACTCGCCGTGACAACTGTTCTTGTGATTTTTAACATGTTTAAAATTTTTGGAACATCTGATGAACCATGGACTGAAAACCAAATTGCTTTCTGCTTTGTGAACATGCTTACTATGATCGTCAGTCTTACTACAAAAGATTGGGTTGTTGTTGTTGCATCATACAGAGTCGCTTACTATATTGTTGTATGTGTAATGCCAGCTGCTTTTGTGTCTGACTTTGGCTTTATGAAGTGTATTAGCATTGTTTACATGGCTTGTGGTTATTTGTTCTGCTGTTATTATGGTATCCTCTATTGGGTTAACAGATTTACATGCATGACTTGTGGTGTTTATCAATTCACTGTGTCTGCAGCTGAACTTAAATACATGACTGCTAACAACCTTTCTGCACCTAAGAATGCGTATGACGCTATGATTCTTAGTGCTAAATTGATTGGTGTTGGAGGTAAGAGAAACATTAAAATTTCAACTGTACAG------------------ >S378_1ab_VIPR_ALG1_422313331_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1 ---------GCTGGTAAAGTAAAATCTTTCTTTTACCCTATTGTGACTGCAATGACAATTCTCTTTGCTTTTTGGCTTGAATTTTTCATGTACACACCCTTTACTTGGATTAACCCAGCTTTTGTTAGCTTTGTATTGGCTGTTACAACTTTGGTTTCGACTGTTTTTGTTTCAGGAATTAAACATAAGATGTTGTTCTTTATGTCTTTTGTTCTGCCTAGCGTTGTTCTTGTAACAGCACACAACTTATTCTGGGACTTTTCTTACTATGAAAGTCTTCAGTCAATTGTTGAAAATACTAACACTATGTTCTTGCCTGTTGACATGCAAGGTGTCATGCTCACAGTGTTTTGTTTTATTGTCTTTGTCACATACAGTGTTAGATTCTTCACTTGTAAACAATCATGGTTCTCACTCGCCGTGACAACTGTTCTTGTGATTTTTAACATGTTTAAAATTTTTGGAACATCTGATGAACCATGGACTGAAAACCAAATTGCTTTCTGCTTTGTGAACATGCTTACTATGATCGTCAGTCTTACTACAAAAGATTGGGTTGTTGTTGTTGCATCATACAGAGTCGCTTACTATATTGTTGTATGTGTAATGCCAGCTGCTTTTGTGTCTGACTTTGGCTTTATGAAGTGTATTAGCATTGTTTACATGGCTTGTGGTTATTTGTTCTGCTGTTATTATGGTATCCTCTATTGGGTTAACAGATTTACATGCATGACTTGTGGTGTTTATCAATTCACTGTGTCTGCAGCTGAACTTAAATACATGACTGCTAACAACCTTTCTGCACCTAAGAATGCGTATGACGCTATGATTCTTAGTGCTAAATTGATTGGTGTTGGAGGTAAGAGAAACATTAAAATTTCAACTGTACAG------------------ >UNKNOWN_AX154950_NA_VIPR_P_14536504_9855_10736_1_NA_NA_Unknown_Alphacoronavirus_1 ---------GCTGGTAAAGTAAAATCTTTCTTCTACCCTATTATGACTGCAATGACAATTCTCTTTGCCTTTTGGCTTGAATTCTTTATGTACACACCCTTCACTTGGATTAATCCAACTTTTGTTAGCATTGTATTGGCTGTTACAACTTTGATCTCGACGGTTTTTGTCTCTGGCATCAAACATAAGATGTTGTTCTTTATGTCTTTTGTCCTTCCTAGTGTTATCCTTGTGACAGCACACAATTTGTTCTGGGACTTTTCTTACTATGAAAGTCTTCAGTCAATTGTTGAGAATACTAACACTATGTTTTTGCCTGTTGACATGCAAGGTGTCATGCTCACAGTGTTTTGCTTTATTGTCTTTGTTACATATAGTGTTAGATTCTTCACTTGCAAACAATCATGGTTCTCACTTGCTGTGACAACTATTCTTGTGATCTTTAACATGGTTAAAATCTTTGGAACATCTGATGAACCATGGACTGAAAACCAAATTGCTTTCTGCTTTGTGAACATGCTTACTATGATTGTCAGTCTTACTACAAAGGATTGGATGGTTGTCATTGCATCATACAGAATTGCATATTATATTGTTGTATGTGTAATGCCATCTGCTTTTGTATCTGACTTTGGGTTTATGAAGTGTATTAGCATTGTTTACATGGCGTGCGGTTATTTGTTTTGTTGCTATTATGGCATTCTTTATTGGGTTAACAGATTTACATGCATGACTTGTGGTGTTTATCAATTCACTGTGTCTGCAGCTGAACTTAAATACATGACCGCTAACAACCTTTCTGCACCTAAGAACGCATATGACGCTATGATTCTTAGTGCTAAATTGATTGGTGTTGGAGGTAAGAGAAACATCAAAATTTCAACTGTACAG------------------ >partially_attenuated_Miller_M60_NA_VIPR_P_110746810_9830_10711_1_1987_USA_Swine_Alphacoronavirus_1 ---------GCTGGTAAAGTAAAATCTTTCTTCTACCCTATTATGACTGCAATGACAATTCTCTTTGCCTTTTGGCTTGAATTCTTTATGTACACACCCTTCACGTGGATTAATCCAACTTTTGTTAGTATTGTATTGGCTGTTACAACTTTGATCTCGACGTTTTTTGTCTCTGGCATCAAACATAAAATGTTGTTCTTTATGTCTTTTGTCCTTCCTAGTGTTATCCTCGTGACAGCACACAATTTGTTCTGGGACTTTTCTTACTATGAAAGTCTTCAGTCAATTGTTGAGAATACTAACACTATGTTTTTGCCTGTTGACATGCAAGGTGTCATGCTCACAGTGTTCTGCTTTATTGTCTTTGTTACATATAGTGTTAGATTCTTCACGTGCAAACAATCATGGTTCTCACTTGCTGTGACAACTATTCTTGTGATCTTTAACATGGTTAAAATCTTTGGAACATCTGATGAACCATGGACTGAAAACCAAATTGCTTTCTGCTTTGTGAACATGCTTACTATGATTGTCAGTCTTACTACAAAGGATTGGATGGTTGTCGTTGCATCATACAGAATTGCATATTATATTGTTGTATGTGTAATGCCATCTGCTTTTGTATCTGACTTTGGGTTTATGAAGTGTATTAGCATTGTTTACATGGCGTGCGGTTATTTGTTTTGTTGCTATTATGGCATTCTTTATTGGGTTAACAGATTTACATGCATGACTTGTGGTGTTTATCAATTCACTGTGTCTGCAGCTGAACTTAAATACATGACCGCTAACAACCTTTCTGCACCTAAGAACGCATATGACGCTATGATTCTTAGTGCTAAATTGATTGGTGTTGGAGGTAAGAGAAACATCAAAATTTCAACTGTACAG------------------ >virulent_Purdue_NA_VIPR_P_110746837_9848_10729_1_1952_USA_Swine_Alphacoronavirus_1 ------------------------------TTCTACCCTATTATGACTGCAATGACAATTCTCTTTGCCTTTTGGCTTGAATTCTTTATGTACACACCCTTCACTTGGATTAATCCAACTTTTGTTAGCATTGTATTGGCTGTTACAACTTTGATCTCGACGGTTTTTGTCTCTGGCATCAAACATAAGATGTTGTTCTTTATGTCTTTTGTCCTTCCTAGTGTTATCCTTGTGACAGCACACAATTTGTTCTGGGACTTTTCTTACTATGAAAGTCTTCAGTCAATTGTTGAGAATACTAACACTATGTTTTTGCCTGTTGACATGCAAGGTGTCATGCTCACAGTGTTTTGCTTTATTGTCTTTGTTACATATAGTGTTAGATTCTTCACTTGCAAACAATCATGGTTCTCACTTGCTGTGACAACTATTCTTGTGATCTTTAACATGGTTAAAATCTTTGGAACATCTGATGAACCATGGACTGAAAACCAAATTGCTTTCTGCTTTGTGAACATGCTTACTATGATTGTCAGTCTTACTACAAAGGATTGGATGGTTGTCGTTGCATCATACAGAATTGCATATTATATTGTTGTATGTGTAATGCCATCTGCTTTTGTATCTGACTTTGGGTTTATGAAGTGTATTAGCATTGTTTACATGGCGTGCGGTTATTTGTTTTGTTGCTATTATGGCATTCTTTATTGGGTTAACAGATTTACATGCATGACTTGTGGTGTTTATCAATTCACTGTGTCTGCAGCTGAACTTAAATACATGACCGCTAACAACCTTTCTGCACCTAAGAACGCATATGACGCTATGATTCTTAGTGCTAAATTGATTGGTGTTGGAGGTAAGAGAAACATCAAAATTTCAACTGTACAGTCAAAACTTACAGAGATG
>171_1ab_VIPR_ALG1_422313312_9901_10782_1_1971_Germany_Dog_Alphacoronavirus_1 ---SGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITTLVSVLLVAGIKHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENVNTTFLPVDMQGVMLALFCVVVFVICTIRFFTCKQSWFSLFATTIFVMFNIVKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAYYIVVYVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ------ >79_1146_ORF_1a_1b_VIPR_P_62836706_9926_10807_1_NA_USA_Unknown_Alphacoronavirus_1 ---SGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITTLVSVLLVAGIKHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENVNTTFLPVDMQGVMLALFCVVVFVICTIRFFTCKQSWFSLFATTIFVMFNIVKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAYYIVVYVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ------ >A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1 ---AGKVTSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTTLISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTVLVIFNMVKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVVASYRIAYYIVVCVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSAAELKYMTANNLSAPRNAYDAMILSAKLIGVGGKRNIKISTVQ------ >Black_1_VIPR_P_161213709_9897_10775_1_NA_USA_Unknown_Alphacoronavirus_1 ----GKVKSLFYPVMTAIAILFAFWLEFFMYTPFTWINPTFVSIILAITTLVSVLLVAGIKHKMLFFMSFVMPSVVLATAHNFVWDMTCYESLQVLVENVNTTFLPVDMQGVMLALFCVAVFVTYTIRFFTCKQSWFSLFATTVFVMFNIVKLLGMIGEPWTDDYILLCLVNMLTMLISLTTKDWFVVFVSYKFAYYIVVYVMQPAFVQDFGFVKCISIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGERNIKISTVQ------ >DF_2_NA_VIPR_P_87242672_9926_10801_1_NA_NA_Unknown_Alphacoronavirus_1 ---SGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITTLVSVLLVAGIKHKMLFFMSFVMPSVILATAHNVVWDMTYYESLQVLVENVNTTFLPVDMQGVMLHWSVCVLYMHY--KIFTCKQSWFSLFATTIFVMFNIVKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAFYIVVYVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ------ >FCoV_C1Je_NA_VIPR_ALG1_112253725_9878_10759_1_NA_NA_Unknown_Alphacoronavirus_1 ---SGKVKSLFYPMMTAVAILFSFWLEFFMYTPFTWINPSFVSVILAITTIFSVLLVAGIKHKMLFFMSFVMPSVVLSTVHNVVWDMTYYESLQVLVENTNTTFLPVDMQGVMLALFCVVVFVTYTIRFFTCKQSWFSLFVTTVFVVFNIVKLLGMVGEPWTENHILLCLVNMLTMLISLTTKDWFVVFVSYKFAYYVVVYVMQPSFVYDFGFVKCISIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSVKLMGIGGERNIKISTVQ------ >FIPV_79_1146_NA_VIPR_ALG1_63098798_9687_10577_1_NA_NA_Cat_Alphacoronavirus_1 NLQSGKVKSIFYPMMTAIAILFAFWLEFFMYTPFTWINPTFVSVVLAITTLVSVLLVAGIKHKMLFFMSFVMPSVILVTAHNVVWDMTYYESLQVLVENVNTTFLPVDMQGVMLALFCVVVFVICTIRFFTCKQSWFSLFATTIFVMFNIVKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDWFVVFASYKVAYYIVVYVMQPAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQ------ >Felis_catus_NLD_UU88_2010_Pp1ab_VIPR_ALG1_530803158_9741_10622_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1 ---SGKVKSLFYPVMTAMAILFAFWLEFFMYTPFTWINPTFVSAILAITTLVSVMLVAGIKHKMLFFMSFVMPSVVLATVHNVVWDMTYYESLQVLVENVNTTFLPVDMQGVMLALFCVVVFVTYTIRFFTCKQSWFSLFVTTVFVVFNIVKLLGMVGEPWTEDHILLCLVNMLTMLISLTTKDWFVVFASYKFAYYIVVYVMQPAFVQDFGFVKCVSIIYMACGYIFCCYYGILYWVNRFTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSVKLMGIGGERNIKISTVQ------ >K378_1ab_VIPR_ALG1_422313320_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1 ---AGKVKSFFYPIVTAMTILFAFWLEFFMYTPFTWINPAFVSFVLAVTTLVSTVFVSGIKHKMLFFMSFVLPSVVLVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTVLVIFNMFKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWVVVVASYRVAYYIVVCVMPAAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ------ >S378_1ab_VIPR_ALG1_422313331_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1 ---AGKVKSFFYPIVTAMTILFAFWLEFFMYTPFTWINPAFVSFVLAVTTLVSTVFVSGIKHKMLFFMSFVLPSVVLVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTVLVIFNMFKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWVVVVASYRVAYYIVVCVMPAAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ------ >UNKNOWN_AX154950_NA_VIPR_P_14536504_9855_10736_1_NA_NA_Unknown_Alphacoronavirus_1 ---AGKVKSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTTLISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNMVKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVIASYRIAYYIVVCVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ------ >partially_attenuated_Miller_M60_NA_VIPR_P_110746810_9830_10711_1_1987_USA_Swine_Alphacoronavirus_1 ---AGKVKSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTTLISTFFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNMVKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVVASYRIAYYIVVCVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQ------ >virulent_Purdue_NA_VIPR_P_110746837_9848_10729_1_1952_USA_Swine_Alphacoronavirus_1 ----------FYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTTLISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNMVKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVVASYRIAYYIVVCVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQSKLTEM
Reading sequence file /data//pss_subsets/A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1.result/original_alignment/codeml/fasta/A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1.result.1
Found 13 sequences of length 909
Alignment looks like a valid DNA alignment.
Estimated diversity is (pairwise deletion - ignoring missing/ambig): 16.2%
Found 255 informative sites.
Writing alignment of informative sites to: Phi.inf.sites
Writing list of informative sites to: Phi.inf.list
Calculating all pairwise incompatibilities...
Done: 0.0% 63.1% 95.4%100.0%
Using a window size of 80 with k as 22
Calculating analytical mean and variance
Doing permutation test for PHI
Doing permutation test for NSS
Doing Permutation test for MAXCHI
Writing alignment of polymorphic unambig sites to: Phi.poly.sites
Window size is 201 polymorphic sites
**p-Value(s)**
----------
NSS: 1.00e-02 (1000 permutations)
Max Chi^2: 0.00e+00 (1000 permutations)
PHI (Permutation): 5.30e-01 (1000 permutations)
PHI (Normal): 5.45e-01
#NEXUS
[ID: 8381123374]
begin taxa;
dimensions ntax=13;
taxlabels
171_1ab_VIPR_ALG1_422313312_9901_10782_1_1971_Germany_Dog_Alphacoronavirus_1
S378_1ab_VIPR_ALG1_422313331_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1
UNKNOWN_AX154950_NA_VIPR_P_14536504_9855_10736_1_NA_NA_Unknown_Alphacoronavirus_1
partially_attenuated_Miller_M60_NA_VIPR_P_110746810_9830_10711_1_1987_USA_Swine_Alphacoronavirus_1
virulent_Purdue_NA_VIPR_P_110746837_9848_10729_1_1952_USA_Swine_Alphacoronavirus_1
79_1146_ORF_1a_1b_VIPR_P_62836706_9926_10807_1_NA_USA_Unknown_Alphacoronavirus_1
A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1
Black_1_VIPR_P_161213709_9897_10775_1_NA_USA_Unknown_Alphacoronavirus_1
DF_2_NA_VIPR_P_87242672_9926_10801_1_NA_NA_Unknown_Alphacoronavirus_1
FCoV_C1Je_NA_VIPR_ALG1_112253725_9878_10759_1_NA_NA_Unknown_Alphacoronavirus_1
FIPV_79_1146_NA_VIPR_ALG1_63098798_9687_10577_1_NA_NA_Cat_Alphacoronavirus_1
Felis_catus_NLD_UU88_2010_Pp1ab_VIPR_ALG1_530803158_9741_10622_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1
K378_1ab_VIPR_ALG1_422313320_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1
;
end;
begin trees;
translate
1 171_1ab_VIPR_ALG1_422313312_9901_10782_1_1971_Germany_Dog_Alphacoronavirus_1,
2 S378_1ab_VIPR_ALG1_422313331_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1,
3 UNKNOWN_AX154950_NA_VIPR_P_14536504_9855_10736_1_NA_NA_Unknown_Alphacoronavirus_1,
4 partially_attenuated_Miller_M60_NA_VIPR_P_110746810_9830_10711_1_1987_USA_Swine_Alphacoronavirus_1,
5 virulent_Purdue_NA_VIPR_P_110746837_9848_10729_1_1952_USA_Swine_Alphacoronavirus_1,
6 79_1146_ORF_1a_1b_VIPR_P_62836706_9926_10807_1_NA_USA_Unknown_Alphacoronavirus_1,
7 A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1,
8 Black_1_VIPR_P_161213709_9897_10775_1_NA_USA_Unknown_Alphacoronavirus_1,
9 DF_2_NA_VIPR_P_87242672_9926_10801_1_NA_NA_Unknown_Alphacoronavirus_1,
10 FCoV_C1Je_NA_VIPR_ALG1_112253725_9878_10759_1_NA_NA_Unknown_Alphacoronavirus_1,
11 FIPV_79_1146_NA_VIPR_ALG1_63098798_9687_10577_1_NA_NA_Cat_Alphacoronavirus_1,
12 Felis_catus_NLD_UU88_2010_Pp1ab_VIPR_ALG1_530803158_9741_10622_1_2010_08_17_Netherlands_Cat_Alphacoronavirus_1,
13 K378_1ab_VIPR_ALG1_422313320_9810_10691_1_1978_USA_Dog_Alphacoronavirus_1
;
[Note: This tree contains information on the topology,
branch lengths (if present), and the probability
of the partition indicated by the branch.]
tree con_50_majrule = (1:1.092644e-03,6:1.135569e-03,9:5.111271e-02,11:4.270703e-03,(((((2:1.104767e-03,13:1.149484e-03)1.000:7.607739e-02,(3:2.600214e-03,4:1.221925e-02,5:1.202431e-03)0.974:3.638347e-02,7:3.488137e-02)1.000:7.789968e-01,10:1.566262e-01)0.959:8.417484e-02,12:6.082382e-02)1.000:7.603482e-02,8:4.839683e-02)1.000:3.283416e-02);
[Note: This tree contains information only on the topology
and branch lengths (median of the posterior probability density).]
tree con_50_majrule = (1:1.092644e-03,6:1.135569e-03,9:5.111271e-02,11:4.270703e-03,(((((2:1.104767e-03,13:1.149484e-03):7.607739e-02,(3:2.600214e-03,4:1.221925e-02,5:1.202431e-03):3.638347e-02,7:3.488137e-02):7.789968e-01,10:1.566262e-01):8.417484e-02,12:6.082382e-02):7.603482e-02,8:4.839683e-02):3.283416e-02);
end;
Estimated marginal likelihoods for runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /data/mrbayes_input.nex.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -3205.21 -3226.33
2 -3206.25 -3226.28
--------------------------------------
TOTAL -3205.60 -3226.30
--------------------------------------
Model parameter summaries over the runs sampled in files
"/data/mrbayes_input.nex.run1.p" and "/data/mrbayes_input.nex.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/mrbayes_input.nex.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.512965 0.031626 1.169827 1.860256 1.498198 917.82 986.11 1.000
r(A<->C){all} 0.097816 0.000430 0.056374 0.136804 0.096744 758.98 865.18 1.000
r(A<->G){all} 0.267610 0.001226 0.204683 0.339859 0.265897 556.54 680.42 1.003
r(A<->T){all} 0.038659 0.000110 0.019753 0.059375 0.037635 1083.94 1127.07 1.000
r(C<->G){all} 0.010223 0.000081 0.000009 0.028096 0.007731 759.85 766.09 1.000
r(C<->T){all} 0.509992 0.001623 0.431701 0.586344 0.509641 447.62 672.56 1.002
r(G<->T){all} 0.075701 0.000189 0.050824 0.103782 0.074695 820.92 869.86 1.000
pi(A){all} 0.253632 0.000168 0.227566 0.278333 0.253579 1063.47 1137.36 1.000
pi(C){all} 0.164283 0.000100 0.145317 0.184251 0.163997 791.32 977.30 1.000
pi(G){all} 0.194912 0.000136 0.171938 0.217666 0.194600 1009.73 1115.43 1.001
pi(T){all} 0.387174 0.000197 0.361025 0.415676 0.387253 768.66 1007.14 1.001
alpha{1,2} 0.204198 0.000790 0.153472 0.259952 0.200955 1274.58 1298.88 1.000
alpha{3} 4.903313 2.726122 2.124069 8.211113 4.683804 1313.09 1371.19 1.000
pinvar{all} 0.228860 0.002517 0.128393 0.327870 0.231880 1267.65 1323.04 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
CODONML (in paml version 4.9h, March 2018) /data/fasta_checked/A76_1ab_VIPR_ALG1_418470985_9814_10695_1_1976_USA_Dog_Alphacoronavirus_1.result.1
Model: One dN/dS ratio,
Codon frequency model: F3x4
Site-class models:
ns = 13 ls = 285
Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 21 21 17 24 20 21 | Ser TCT 3 3 6 3 4 3 | Tyr TAT 8 8 7 7 9 12 | Cys TGT 5 5 6 6 5 7
TTC 8 8 13 6 7 8 | TCC 1 1 0 1 1 4 | TAC 8 8 9 10 8 6 | TGC 5 5 4 4 4 2
Leu TTA 6 6 1 8 6 9 | TCA 3 3 6 3 3 5 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 7 7 7 5 8 7 | TCG 1 1 2 1 1 0 | TAG 0 0 0 0 0 0 | Trp TGG 7 7 7 7 8 7
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 9 9 11 10 8 8 | Pro CCT 3 3 4 3 3 3 | His CAT 1 1 1 0 1 1 | Arg CGT 1 1 0 1 1 0
CTC 1 1 2 1 1 1 | CCC 1 1 1 1 1 1 | CAC 2 2 1 2 4 2 | CGC 0 0 0 0 0 0
CTA 3 3 0 4 3 2 | CCA 3 3 2 4 3 5 | Gln CAA 2 2 3 3 2 4 | CGA 0 0 0 0 0 0
CTG 2 2 0 0 2 0 | CCG 2 2 1 1 2 0 | CAG 5 5 3 4 5 2 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 11 11 18 12 12 12 | Thr ACT 10 10 15 10 10 8 | Asn AAT 5 5 4 6 5 4 | Ser AGT 5 5 4 5 5 4
ATC 2 2 4 2 2 1 | ACC 2 2 0 1 2 6 | AAC 5 5 8 4 5 7 | AGC 1 1 2 1 1 2
ATA 6 6 0 6 5 4 | ACA 9 9 10 11 9 9 | Lys AAA 5 5 6 5 5 5 | Arg AGA 1 1 4 1 0 3
Met ATG 19 19 18 18 20 18 | ACG 2 2 1 2 2 1 | AAG 6 6 4 6 7 6 | AGG 1 1 1 1 1 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 17 17 16 16 14 17 | Ala GCT 8 8 9 10 8 4 | Asp GAT 6 6 3 5 6 4 | Gly GGT 7 7 6 7 7 5
GTC 5 5 6 5 5 6 | GCC 3 3 0 2 3 3 | GAC 1 1 3 2 1 1 | GGC 2 2 1 2 2 3
GTA 4 4 5 3 4 10 | GCA 7 7 7 6 6 5 | Glu GAA 3 3 5 4 3 4 | GGA 3 3 3 2 3 2
GTG 9 9 6 9 10 7 | GCG 0 0 1 0 0 0 | GAG 2 2 1 2 2 3 | GGG 0 0 0 0 0 1
--------------------------------------------------------------------------------------------------------------------------------------
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT 21 21 22 22 20 20 | Ser TCT 3 2 6 6 8 8 | Tyr TAT 8 8 8 8 10 10 | Cys TGT 5 8 7 7 4 4
TTC 8 7 10 10 10 11 | TCC 1 1 0 0 0 0 | TAC 8 9 8 8 6 6 | TGC 5 1 3 3 6 6
Leu TTA 6 6 1 1 0 0 | TCA 3 5 6 6 5 5 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
TTG 7 6 6 6 7 7 | TCG 1 0 1 1 1 1 | TAG 0 0 0 0 0 0 | Trp TGG 7 7 7 7 7 7
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT 9 9 9 9 12 11 | Pro CCT 3 3 4 4 4 4 | His CAT 1 2 1 1 1 1 | Arg CGT 1 0 0 0 0 0
CTC 1 2 4 4 2 3 | CCC 1 1 1 1 1 1 | CAC 2 1 1 1 1 1 | CGC 0 0 0 0 0 0
CTA 3 1 0 0 0 0 | CCA 3 3 3 3 3 3 | Gln CAA 2 3 4 4 4 4 | CGA 0 0 0 0 0 0
CTG 2 2 1 1 0 0 | CCG 2 2 0 0 0 0 | CAG 5 4 2 2 2 2 | CGG 0 0 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT 11 11 16 16 18 17 | Thr ACT 10 8 15 15 14 12 | Asn AAT 5 6 2 2 3 3 | Ser AGT 5 5 3 3 4 5
ATC 2 3 2 2 6 6 | ACC 2 4 0 0 1 1 | AAC 5 4 10 10 9 9 | AGC 1 1 3 3 2 1
ATA 6 3 0 0 0 0 | ACA 9 7 10 10 10 10 | Lys AAA 5 6 7 7 6 7 | Arg AGA 1 2 4 4 4 4
Met ATG 19 19 16 16 18 18 | ACG 2 5 0 0 1 3 | AAG 6 5 4 4 5 4 | AGG 1 1 0 0 0 0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT 17 21 20 20 14 14 | Ala GCT 7 10 12 12 8 8 | Asp GAT 6 4 2 2 2 2 | Gly GGT 7 8 6 6 5 5
GTC 5 2 5 5 6 6 | GCC 3 2 1 1 1 1 | GAC 1 2 4 4 4 4 | GGC 2 1 1 1 2 2
GTA 5 10 5 5 5 5 | GCA 7 5 5 5 7 7 | Glu GAA 3 5 6 6 5 5 | GGA 3 2 3 3 2 2
GTG 9 7 7 7 6 6 | GCG 0 0 1 1 1 1 | GAG 2 2 0 0 1 1 | GGG 0 0 0 0 1 1
--------------------------------------------------------------------------------------------------------------------------------------
------------------------------------------------------
Phe TTT 20 | Ser TCT 8 | Tyr TAT 10 | Cys TGT 4
TTC 10 | TCC 0 | TAC 6 | TGC 6
Leu TTA 0 | TCA 5 | *** TAA 0 | *** TGA 0
TTG 7 | TCG 1 | TAG 0 | Trp TGG 7
------------------------------------------------------
Leu CTT 12 | Pro CCT 4 | His CAT 1 | Arg CGT 0
CTC 2 | CCC 1 | CAC 1 | CGC 0
CTA 0 | CCA 3 | Gln CAA 4 | CGA 0
CTG 0 | CCG 0 | CAG 2 | CGG 0
------------------------------------------------------
Ile ATT 17 | Thr ACT 14 | Asn AAT 3 | Ser AGT 4
ATC 6 | ACC 1 | AAC 9 | AGC 2
ATA 0 | ACA 10 | Lys AAA 6 | Arg AGA 4
Met ATG 18 | ACG 1 | AAG 5 | AGG 0
------------------------------------------------------
Val GTT 15 | Ala GCT 8 | Asp GAT 2 | Gly GGT 5
GTC 6 | GCC 1 | GAC 4 | GGC 2
GTA 5 | GCA 7 | Glu GAA 5 | GGA 2
GTG 6 | GCG 1 | GAG 1 | GGG 1
------------------------------------------------------
Codon position x base (3x4) table for each sequence.
#1: C1
position 1: T:0.29123 C:0.12281 A:0.31579 G:0.27018
position 2: T:0.45614 C:0.20351 A:0.20702 G:0.13333
position 3: T:0.42105 C:0.16491 A:0.19298 G:0.22105
Average T:0.38947 C:0.16374 A:0.23860 G:0.20819
#2: C2
position 1: T:0.29123 C:0.12281 A:0.31579 G:0.27018
position 2: T:0.45614 C:0.20351 A:0.20702 G:0.13333
position 3: T:0.42105 C:0.16491 A:0.19298 G:0.22105
Average T:0.38947 C:0.16374 A:0.23860 G:0.20819
#3: C3
position 1: T:0.29825 C:0.10175 A:0.34737 G:0.25263
position 2: T:0.43509 C:0.22807 A:0.20351 G:0.13333
position 3: T:0.44561 C:0.18947 A:0.18246 G:0.18246
Average T:0.39298 C:0.17310 A:0.24444 G:0.18947
#4: C4
position 1: T:0.29825 C:0.11930 A:0.31930 G:0.26316
position 2: T:0.45263 C:0.20702 A:0.21053 G:0.12982
position 3: T:0.43860 C:0.15439 A:0.21053 G:0.19649
Average T:0.39649 C:0.16023 A:0.24678 G:0.19649
#5: C5
position 1: T:0.29474 C:0.12632 A:0.31930 G:0.25965
position 2: T:0.44561 C:0.20351 A:0.22105 G:0.12982
position 3: T:0.41404 C:0.16491 A:0.18246 G:0.23860
Average T:0.38480 C:0.16491 A:0.24094 G:0.20936
#6: C6
position 1: T:0.31930 C:0.10175 A:0.31579 G:0.26316
position 2: T:0.45965 C:0.20000 A:0.21404 G:0.12632
position 3: T:0.39649 C:0.18596 A:0.23509 G:0.18246
Average T:0.39181 C:0.16257 A:0.25497 G:0.19064
#7: C7
position 1: T:0.29123 C:0.12281 A:0.31579 G:0.27018
position 2: T:0.45965 C:0.20000 A:0.20702 G:0.13333
position 3: T:0.41754 C:0.16491 A:0.19649 G:0.22105
Average T:0.38947 C:0.16257 A:0.23977 G:0.20819
#8: C8
position 1: T:0.28421 C:0.11579 A:0.31579 G:0.28421
position 2: T:0.45614 C:0.20351 A:0.21404 G:0.12632
position 3: T:0.44211 C:0.14386 A:0.20351 G:0.21053
Average T:0.39415 C:0.15439 A:0.24444 G:0.20702
#9: C9
position 1: T:0.29825 C:0.10526 A:0.32281 G:0.27368
position 2: T:0.43509 C:0.22807 A:0.20702 G:0.12982
position 3: T:0.46667 C:0.18596 A:0.18947 G:0.15789
Average T:0.40000 C:0.17310 A:0.23977 G:0.18713
#10: C10
position 1: T:0.29825 C:0.10526 A:0.32281 G:0.27368
position 2: T:0.43509 C:0.22807 A:0.20702 G:0.12982
position 3: T:0.46667 C:0.18596 A:0.18947 G:0.15789
Average T:0.40000 C:0.17310 A:0.23977 G:0.18713
#11: C11
position 1: T:0.29474 C:0.10526 A:0.35439 G:0.24561
position 2: T:0.43509 C:0.22807 A:0.20702 G:0.12982
position 3: T:0.44561 C:0.20000 A:0.17895 G:0.17544
Average T:0.39181 C:0.17778 A:0.24678 G:0.18363
#12: C12
position 1: T:0.29825 C:0.10526 A:0.35088 G:0.24561
position 2: T:0.43509 C:0.22807 A:0.20702 G:0.12982
position 3: T:0.43509 C:0.20351 A:0.18246 G:0.17895
Average T:0.38947 C:0.17895 A:0.24678 G:0.18480
#13: C13
position 1: T:0.29474 C:0.10526 A:0.35088 G:0.24912
position 2: T:0.43509 C:0.22807 A:0.20702 G:0.12982
position 3: T:0.44561 C:0.20000 A:0.17895 G:0.17544
Average T:0.39181 C:0.17778 A:0.24561 G:0.18480
Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT 270 | Ser S TCT 63 | Tyr Y TAT 113 | Cys C TGT 73
TTC 116 | TCC 10 | TAC 100 | TGC 54
Leu L TTA 50 | TCA 58 | *** * TAA 0 | *** * TGA 0
TTG 87 | TCG 12 | TAG 0 | Trp W TGG 92
------------------------------------------------------------------------------
Leu L CTT 126 | Pro P CCT 45 | His H CAT 13 | Arg R CGT 5
CTC 25 | CCC 13 | CAC 21 | CGC 0
CTA 19 | CCA 41 | Gln Q CAA 41 | CGA 0
CTG 12 | CCG 12 | CAG 43 | CGG 0
------------------------------------------------------------------------------
Ile I ATT 182 | Thr T ACT 151 | Asn N AAT 53 | Ser S AGT 57
ATC 40 | ACC 22 | AAC 90 | AGC 21
ATA 36 | ACA 123 | Lys K AAA 75 | Arg R AGA 33
Met M ATG 236 | ACG 22 | AAG 68 | AGG 7
------------------------------------------------------------------------------
Val V GTT 218 | Ala A GCT 112 | Asp D GAT 50 | Gly G GGT 81
GTC 67 | GCC 24 | GAC 32 | GGC 23
GTA 70 | GCA 81 | Glu E GAA 57 | GGA 33
GTG 98 | GCG 6 | GAG 19 | GGG 4
------------------------------------------------------------------------------
Codon position x base (3x4) table, overall
position 1: T:0.29636 C:0.11228 A:0.32821 G:0.26316
position 2: T:0.44588 C:0.21457 A:0.20918 G:0.13036
position 3: T:0.43509 C:0.17760 A:0.19352 G:0.19379
Average T:0.39244 C:0.16815 A:0.24363 G:0.19577
Model 1: NearlyNeutral (2 categories)
TREE # 1: (1, 2, 5, 7, (((((10, 9), (11, 12, 13), 3), 6), 8), 4)); MP score: 400
lnL(ntime: 19 np: 22): -2911.930255 +0.000000
14..1 14..2 14..5 14..7 14..15 15..16 16..17 17..18 18..19 19..10 19..9 18..20 20..11 20..12 20..13 18..3 17..6 16..8 15..4
0.000004 0.000004 0.116130 0.007741 0.073089 0.166224 0.152169 1.722061 0.185733 0.000004 0.000004 0.083287 0.003673 0.026291 0.000004 0.085315 0.358816 0.134278 0.105797 3.785639 0.918020 0.048924
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 3.220624
(1: 0.000004, 2: 0.000004, 5: 0.116130, 7: 0.007741, (((((10: 0.000004, 9: 0.000004): 0.185733, (11: 0.003673, 12: 0.026291, 13: 0.000004): 0.083287, 3: 0.085315): 1.722061, 6: 0.358816): 0.152169, 8: 0.134278): 0.166224, 4: 0.105797): 0.073089);
(C1: 0.000004, C2: 0.000004, C5: 0.116130, C7: 0.007741, (((((C10: 0.000004, C9: 0.000004): 0.185733, (C11: 0.003673, C12: 0.026291, C13: 0.000004): 0.083287, C3: 0.085315): 1.722061, C6: 0.358816): 0.152169, C8: 0.134278): 0.166224, C4: 0.105797): 0.073089);
Detailed output identifying parameters
kappa (ts/tv) = 3.78564
MLEs of dN/dS (w) for site classes (K=2)
p: 0.91802 0.08198
w: 0.04892 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
14..1 0.000 632.0 223.0 0.1269 0.0000 0.0000 0.0 0.0
14..2 0.000 632.0 223.0 0.1269 0.0000 0.0000 0.0 0.0
14..5 0.116 632.0 223.0 0.1269 0.0139 0.1092 8.8 24.3
14..7 0.008 632.0 223.0 0.1269 0.0009 0.0073 0.6 1.6
14..15 0.073 632.0 223.0 0.1269 0.0087 0.0687 5.5 15.3
15..16 0.166 632.0 223.0 0.1269 0.0198 0.1562 12.5 34.8
16..17 0.152 632.0 223.0 0.1269 0.0181 0.1430 11.5 31.9
17..18 1.722 632.0 223.0 0.1269 0.2054 1.6186 129.8 361.0
18..19 0.186 632.0 223.0 0.1269 0.0222 0.1746 14.0 38.9
19..10 0.000 632.0 223.0 0.1269 0.0000 0.0000 0.0 0.0
19..9 0.000 632.0 223.0 0.1269 0.0000 0.0000 0.0 0.0
18..20 0.083 632.0 223.0 0.1269 0.0099 0.0783 6.3 17.5
20..11 0.004 632.0 223.0 0.1269 0.0004 0.0035 0.3 0.8
20..12 0.026 632.0 223.0 0.1269 0.0031 0.0247 2.0 5.5
20..13 0.000 632.0 223.0 0.1269 0.0000 0.0000 0.0 0.0
18..3 0.085 632.0 223.0 0.1269 0.0102 0.0802 6.4 17.9
17..6 0.359 632.0 223.0 0.1269 0.0428 0.3373 27.0 75.2
16..8 0.134 632.0 223.0 0.1269 0.0160 0.1262 10.1 28.1
15..4 0.106 632.0 223.0 0.1269 0.0126 0.0994 8.0 22.2
Time used: 0:47
Model 2: PositiveSelection (3 categories)
TREE # 1: (1, 2, 5, 7, (((((10, 9), (11, 12, 13), 3), 6), 8), 4)); MP score: 400
check convergence..
lnL(ntime: 19 np: 24): -2911.930255 +0.000000
14..1 14..2 14..5 14..7 14..15 15..16 16..17 17..18 18..19 19..10 19..9 18..20 20..11 20..12 20..13 18..3 17..6 16..8 15..4
0.000004 0.000004 0.116130 0.007741 0.073090 0.166224 0.152168 1.722055 0.185732 0.000004 0.000004 0.083287 0.003673 0.026291 0.000004 0.085315 0.358818 0.134277 0.105797 3.785625 0.918021 0.058949 0.048924 1.000000
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 3.220618
(1: 0.000004, 2: 0.000004, 5: 0.116130, 7: 0.007741, (((((10: 0.000004, 9: 0.000004): 0.185732, (11: 0.003673, 12: 0.026291, 13: 0.000004): 0.083287, 3: 0.085315): 1.722055, 6: 0.358818): 0.152168, 8: 0.134277): 0.166224, 4: 0.105797): 0.073090);
(C1: 0.000004, C2: 0.000004, C5: 0.116130, C7: 0.007741, (((((C10: 0.000004, C9: 0.000004): 0.185732, (C11: 0.003673, C12: 0.026291, C13: 0.000004): 0.083287, C3: 0.085315): 1.722055, C6: 0.358818): 0.152168, C8: 0.134277): 0.166224, C4: 0.105797): 0.073090);
Detailed output identifying parameters
kappa (ts/tv) = 3.78562
MLEs of dN/dS (w) for site classes (K=3)
p: 0.91802 0.05895 0.02303
w: 0.04892 1.00000 1.00000
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
14..1 0.000 632.0 223.0 0.1269 0.0000 0.0000 0.0 0.0
14..2 0.000 632.0 223.0 0.1269 0.0000 0.0000 0.0 0.0
14..5 0.116 632.0 223.0 0.1269 0.0139 0.1092 8.8 24.3
14..7 0.008 632.0 223.0 0.1269 0.0009 0.0073 0.6 1.6
14..15 0.073 632.0 223.0 0.1269 0.0087 0.0687 5.5 15.3
15..16 0.166 632.0 223.0 0.1269 0.0198 0.1562 12.5 34.8
16..17 0.152 632.0 223.0 0.1269 0.0181 0.1430 11.5 31.9
17..18 1.722 632.0 223.0 0.1269 0.2054 1.6186 129.8 361.0
18..19 0.186 632.0 223.0 0.1269 0.0222 0.1746 14.0 38.9
19..10 0.000 632.0 223.0 0.1269 0.0000 0.0000 0.0 0.0
19..9 0.000 632.0 223.0 0.1269 0.0000 0.0000 0.0 0.0
18..20 0.083 632.0 223.0 0.1269 0.0099 0.0783 6.3 17.5
20..11 0.004 632.0 223.0 0.1269 0.0004 0.0035 0.3 0.8
20..12 0.026 632.0 223.0 0.1269 0.0031 0.0247 2.0 5.5
20..13 0.000 632.0 223.0 0.1269 0.0000 0.0000 0.0 0.0
18..3 0.085 632.0 223.0 0.1269 0.0102 0.0802 6.4 17.9
17..6 0.359 632.0 223.0 0.1269 0.0428 0.3373 27.0 75.2
16..8 0.134 632.0 223.0 0.1269 0.0160 0.1262 10.1 28.1
15..4 0.106 632.0 223.0 0.1269 0.0126 0.0994 8.0 22.2
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
The grid (see ternary graph for p0-p1)
w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
w0: 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
w2: 0.988 0.008 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.000
Posterior for p0-p1 (see the ternary graph) (YWN2015, fig. 1)
0.000
0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.013
0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.016 0.971
sum of density on p0-p1 = 1.000000
Time used: 1:37
Model 7: beta (10 categories)
TREE # 1: (1, 2, 5, 7, (((((10, 9), (11, 12, 13), 3), 6), 8), 4)); MP score: 400
check convergence..
lnL(ntime: 19 np: 22): -2897.171559 +0.000000
14..1 14..2 14..5 14..7 14..15 15..16 16..17 17..18 18..19 19..10 19..9 18..20 20..11 20..12 20..13 18..3 17..6 16..8 15..4
0.000004 0.000004 0.115121 0.007737 0.073285 0.161795 0.138098 1.777100 0.189408 0.000004 0.000004 0.083675 0.003718 0.026524 0.000004 0.085970 0.366531 0.137417 0.105495 3.677016 0.300950 3.049439
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 3.271892
(1: 0.000004, 2: 0.000004, 5: 0.115121, 7: 0.007737, (((((10: 0.000004, 9: 0.000004): 0.189408, (11: 0.003718, 12: 0.026524, 13: 0.000004): 0.083675, 3: 0.085970): 1.777100, 6: 0.366531): 0.138098, 8: 0.137417): 0.161795, 4: 0.105495): 0.073285);
(C1: 0.000004, C2: 0.000004, C5: 0.115121, C7: 0.007737, (((((C10: 0.000004, C9: 0.000004): 0.189408, (C11: 0.003718, C12: 0.026524, C13: 0.000004): 0.083675, C3: 0.085970): 1.777100, C6: 0.366531): 0.138098, C8: 0.137417): 0.161795, C4: 0.105495): 0.073285);
Detailed output identifying parameters
kappa (ts/tv) = 3.67702
Parameters in M7 (beta):
p = 0.30095 q = 3.04944
MLEs of dN/dS (w) for site classes (K=10)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000
w: 0.00001 0.00047 0.00258 0.00795 0.01864 0.03740 0.06840 0.11906 0.20636 0.39597
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
14..1 0.000 632.7 222.3 0.0857 0.0000 0.0000 0.0 0.0
14..2 0.000 632.7 222.3 0.0857 0.0000 0.0000 0.0 0.0
14..5 0.115 632.7 222.3 0.0857 0.0102 0.1187 6.4 26.4
14..7 0.008 632.7 222.3 0.0857 0.0007 0.0080 0.4 1.8
14..15 0.073 632.7 222.3 0.0857 0.0065 0.0755 4.1 16.8
15..16 0.162 632.7 222.3 0.0857 0.0143 0.1668 9.0 37.1
16..17 0.138 632.7 222.3 0.0857 0.0122 0.1423 7.7 31.6
17..18 1.777 632.7 222.3 0.0857 0.1570 1.8318 99.3 407.2
18..19 0.189 632.7 222.3 0.0857 0.0167 0.1952 10.6 43.4
19..10 0.000 632.7 222.3 0.0857 0.0000 0.0000 0.0 0.0
19..9 0.000 632.7 222.3 0.0857 0.0000 0.0000 0.0 0.0
18..20 0.084 632.7 222.3 0.0857 0.0074 0.0862 4.7 19.2
20..11 0.004 632.7 222.3 0.0857 0.0003 0.0038 0.2 0.9
20..12 0.027 632.7 222.3 0.0857 0.0023 0.0273 1.5 6.1
20..13 0.000 632.7 222.3 0.0857 0.0000 0.0000 0.0 0.0
18..3 0.086 632.7 222.3 0.0857 0.0076 0.0886 4.8 19.7
17..6 0.367 632.7 222.3 0.0857 0.0324 0.3778 20.5 84.0
16..8 0.137 632.7 222.3 0.0857 0.0121 0.1416 7.7 31.5
15..4 0.105 632.7 222.3 0.0857 0.0093 0.1087 5.9 24.2
Time used: 5:13
Model 8: beta&w>1 (11 categories)
TREE # 1: (1, 2, 5, 7, (((((10, 9), (11, 12, 13), 3), 6), 8), 4)); MP score: 400
check convergence..
lnL(ntime: 19 np: 24): -2897.174340 +0.000000
14..1 14..2 14..5 14..7 14..15 15..16 16..17 17..18 18..19 19..10 19..9 18..20 20..11 20..12 20..13 18..3 17..6 16..8 15..4
0.000004 0.000004 0.115135 0.007738 0.073295 0.161815 0.138117 1.777322 0.189433 0.000004 0.000004 0.083685 0.003718 0.026527 0.000004 0.085980 0.366576 0.137435 0.105510 3.677003 0.999990 0.300955 3.049516 5.741201
Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).
tree length = 3.272305
(1: 0.000004, 2: 0.000004, 5: 0.115135, 7: 0.007738, (((((10: 0.000004, 9: 0.000004): 0.189433, (11: 0.003718, 12: 0.026527, 13: 0.000004): 0.083685, 3: 0.085980): 1.777322, 6: 0.366576): 0.138117, 8: 0.137435): 0.161815, 4: 0.105510): 0.073295);
(C1: 0.000004, C2: 0.000004, C5: 0.115135, C7: 0.007738, (((((C10: 0.000004, C9: 0.000004): 0.189433, (C11: 0.003718, C12: 0.026527, C13: 0.000004): 0.083685, C3: 0.085980): 1.777322, C6: 0.366576): 0.138117, C8: 0.137435): 0.161815, C4: 0.105510): 0.073295);
Detailed output identifying parameters
kappa (ts/tv) = 3.67700
Parameters in M8 (beta&w>1):
p0 = 0.99999 p = 0.30096 q = 3.04952
(p1 = 0.00001) w = 5.74120
MLEs of dN/dS (w) for site classes (K=11)
p: 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.10000 0.00001
w: 0.00001 0.00047 0.00258 0.00795 0.01864 0.03740 0.06840 0.11906 0.20636 0.39596 5.74120
(note that p[10] is zero)
dN & dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
14..1 0.000 632.7 222.3 0.0857 0.0000 0.0000 0.0 0.0
14..2 0.000 632.7 222.3 0.0857 0.0000 0.0000 0.0 0.0
14..5 0.115 632.7 222.3 0.0857 0.0102 0.1187 6.4 26.4
14..7 0.008 632.7 222.3 0.0857 0.0007 0.0080 0.4 1.8
14..15 0.073 632.7 222.3 0.0857 0.0065 0.0755 4.1 16.8
15..16 0.162 632.7 222.3 0.0857 0.0143 0.1668 9.0 37.1
16..17 0.138 632.7 222.3 0.0857 0.0122 0.1423 7.7 31.6
17..18 1.777 632.7 222.3 0.0857 0.1571 1.8318 99.4 407.2
18..19 0.189 632.7 222.3 0.0857 0.0167 0.1952 10.6 43.4
19..10 0.000 632.7 222.3 0.0857 0.0000 0.0000 0.0 0.0
19..9 0.000 632.7 222.3 0.0857 0.0000 0.0000 0.0 0.0
18..20 0.084 632.7 222.3 0.0857 0.0074 0.0862 4.7 19.2
20..11 0.004 632.7 222.3 0.0857 0.0003 0.0038 0.2 0.9
20..12 0.027 632.7 222.3 0.0857 0.0023 0.0273 1.5 6.1
20..13 0.000 632.7 222.3 0.0857 0.0000 0.0000 0.0 0.0
18..3 0.086 632.7 222.3 0.0857 0.0076 0.0886 4.8 19.7
17..6 0.367 632.7 222.3 0.0857 0.0324 0.3778 20.5 84.0
16..8 0.137 632.7 222.3 0.0857 0.0121 0.1416 7.7 31.5
15..4 0.106 632.7 222.3 0.0857 0.0093 0.1087 5.9 24.2
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: C1)
Pr(w>1) post mean +- SE for w
197 Q 0.550 1.071 +- 0.527
The grid
p0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950
p : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
q : 0.100 0.300 0.500 0.700 0.900 1.100 1.300 1.500 1.700 1.900
ws: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500
Posterior on the grid
p0: 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.000
p : 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
q : 0.000 0.000 0.000 0.000 0.001 0.017 0.074 0.183 0.310 0.415
ws: 0.971 0.019 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001
Time used: 9:27
Model 1: NearlyNeutral -2911.930255 Model 2: PositiveSelection -2911.930255 Model 7: beta -2897.171559 Model 8: beta&w>1 -2897.174340 Model 2 vs 1 0 Model 8 vs 7 -.005562
Not all of the following information may be relevant for the case being handled, since this project may be part of a much larger auto-PSS-genome project where several methods of detection of positively selected sites have been used. As such the aligned.score_ascii file may have more sequences than the file effectively used to detect positively selected codons, since the content of this file reflects the content of the file used for the master alignment, from which a subsample may have been taken. # ### General parameters ### # # The maximum number of sequences to use for the master file sequence_limit=90 # The random seed random_seed=3976763 # ### Alignment ### # # The alignment method: clustalw, muscle, kalign, t_coffee, or amap align_method=muscle # Minimum support value for amino acid positions in the alignment tcoffee_min_score=3 # ### MrBayes ### # # Number of iterations in MrBayes mrbayes_generations=1000000 # MrBayes burnin mrbayes_burnin=2500 # ### FUBAR ### # # The maximum number of sequences to be used by FUBAR. fubar_sequence_limit=90 # The number of FUBAR runs fubar_runs=1 # ### codeML ### # # The maximum number of sequences to be used by CodeML codeml_sequence_limit=30 # The number of CodeML runs codeml_runs=1 # The CodeML models to be run, one or more of: '1', '2', '7', and/or '8'. codeml_models=1 2 7 8 # ### OmegaMap ### # # The maximum number of sequences to use in OmegaMap omegamap_sequence_limit=90 # The number of OmegaMap runs omegamap_runs=1 # The number of OmegaMap iterations omegamap_iterations=2500
Phone: +351 220 408 800
Email: info@i3s.up.pt
Address: Rua Alfredo Allen, 208
4200-135 Porto, Portugal
If you use B+, please cite us:
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7
N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3
