--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Fri Jan 24 09:34:18 GMT 2020 codeml.models=0 1 2 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=MUSCLE tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir=/usr/bin/ input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb tcoffee.bin=t_coffee mrbayes.dir=/opt/mrbayes_3.2.2/src tcoffee.dir= tcoffee.minScore=3 input.fasta=/data/7res/ML1750/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/data/7res/ML1750/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/data/7res/ML1750/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /data/7res/ML1750/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -2675.57 -2688.42 2 -2673.53 -2687.10 -------------------------------------- TOTAL -2674.10 -2687.97 -------------------------------------- Model parameter summaries over the runs sampled in files "/data/7res/ML1750/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/data/7res/ML1750/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/data/7res/ML1750/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.719059 0.081541 0.205258 1.267809 0.691618 1293.34 1302.62 1.000 r(A<->C){all} 0.240012 0.016143 0.005059 0.472849 0.228707 245.13 294.00 1.000 r(A<->G){all} 0.119604 0.010718 0.000011 0.326905 0.093860 234.14 292.52 1.005 r(A<->T){all} 0.137243 0.011561 0.000008 0.350904 0.112330 194.74 242.37 1.001 r(C<->G){all} 0.207953 0.016024 0.001042 0.442665 0.192900 299.18 319.86 1.001 r(C<->T){all} 0.129903 0.010659 0.000068 0.333003 0.106233 374.38 391.60 1.001 r(G<->T){all} 0.165286 0.016651 0.000104 0.421812 0.133762 160.39 218.12 1.001 pi(A){all} 0.195335 0.000081 0.177179 0.212264 0.195384 1226.17 1342.86 1.000 pi(C){all} 0.275909 0.000104 0.256818 0.296946 0.275725 1302.61 1316.23 1.000 pi(G){all} 0.314158 0.000115 0.292554 0.333922 0.313839 1047.93 1122.15 1.000 pi(T){all} 0.214597 0.000088 0.196569 0.233527 0.214503 1272.20 1317.76 1.000 alpha{1,2} 0.106038 0.006906 0.048335 0.259329 0.076699 1248.97 1255.49 1.000 alpha{3} 0.152438 0.018612 0.046293 0.422861 0.093889 1225.53 1316.55 1.000 pinvar{all} 0.983179 0.000027 0.973228 0.992727 0.983702 1305.33 1403.17 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -2544.034282 Model 2: PositiveSelection -2513.546565 Model 0: one-ratio -2547.349315 Model 7: beta -2544.049409 Model 8: beta&w>1 -2513.546562 Model 0 vs 1 6.630065999999715 Model 2 vs 1 60.97543399999995 Additional information for M1 vs M2: Naive Empirical Bayes (NEB) analysis Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: NC_011896_1_WP_012634437_1_1864_MLBR_RS08840) Pr(w>1) post mean +- SE for w 55 E 1.000** 998.997 620 I 1.000** 999.000 621 H 1.000** 999.000 622 R 1.000** 999.000 623 S 1.000** 999.000 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: NC_011896_1_WP_012634437_1_1864_MLBR_RS08840) Pr(w>1) post mean +- SE for w 55 E 0.628 6.192 +- 4.351 620 I 0.997** 9.423 +- 1.406 621 H 0.992** 9.381 +- 1.528 622 R 0.946 8.998 +- 2.322 623 S 0.882 8.449 +- 3.055 Model 8 vs 7 61.0056940000004 Additional information for M7 vs M8: Naive Empirical Bayes (NEB) analysis Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: NC_011896_1_WP_012634437_1_1864_MLBR_RS08840) Pr(w>1) post mean +- SE for w 55 E 1.000** 998.999 620 I 1.000** 999.000 621 H 1.000** 999.000 622 R 1.000** 999.000 623 S 1.000** 999.000 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: NC_011896_1_WP_012634437_1_1864_MLBR_RS08840) Pr(w>1) post mean +- SE for w 55 E 0.690 6.733 +- 4.285 620 I 0.999** 9.510 +- 1.318 621 H 0.996** 9.489 +- 1.385 622 R 0.970* 9.262 +- 1.960 623 S 0.919 8.815 +- 2.718
>C1 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN HDIHETKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK GVIPMALGTCQSPEPSEHQIHRSooo >C2 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK GVIPMALGTCQSPEPSEHQIHRSooo >C3 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK GVIPMALGTCQSPEPSEHQIHRSooo >C4 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK GVIPMALGTCQSPEPSEHQPMVCSGR >C5 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK GVIPMALGTCQSPEPSEHQIHRSooo >C6 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK GVIPMALGTCQSPEPSEHQIHRSooo CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=6, Len=626 C1 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN C2 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN C3 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN C4 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN C5 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN C6 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN ************************************************** C1 HDIHETKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP C2 HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP C3 HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP C4 HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP C5 HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP C6 HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP **** ********************************************* C1 EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD C2 EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD C3 EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD C4 EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD C5 EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD C6 EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD ************************************************** C1 ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER C2 ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER C3 ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER C4 ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER C5 ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER C6 ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER ************************************************** C1 LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT C2 LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT C3 LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT C4 LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT C5 LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT C6 LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT ************************************************** C1 VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS C2 VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS C3 VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS C4 VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS C5 VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS C6 VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS ************************************************** C1 IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE C2 IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE C3 IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE C4 IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE C5 IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE C6 IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE ************************************************** C1 VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF C2 VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF C3 VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF C4 VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF C5 VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF C6 VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF ************************************************** C1 IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA C2 IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA C3 IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA C4 IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA C5 IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA C6 IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA ************************************************** C1 EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH C2 EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH C3 EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH C4 EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH C5 EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH C6 EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH ************************************************** C1 LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL C2 LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL C3 LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL C4 LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL C5 LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL C6 LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL ************************************************** C1 AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK C2 AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK C3 AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK C4 AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK C5 AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK C6 AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK ************************************************** C1 GVIPMALGTCQSPEPSEHQIHRSooo C2 GVIPMALGTCQSPEPSEHQIHRSooo C3 GVIPMALGTCQSPEPSEHQIHRSooo C4 GVIPMALGTCQSPEPSEHQPMVCSGR C5 GVIPMALGTCQSPEPSEHQIHRSooo C6 GVIPMALGTCQSPEPSEHQIHRSooo ******************* . PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:09 - Revision 1613 - Build 432) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] input.prot.fasta.muscle_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 626 type PROTEIN Struct Unchecked Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 626 type PROTEIN Struct Unchecked Multi Core Mode: 96 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [18780] Library Relaxation: Multi_proc [96] Relaxation Summary: [18780]--->[18780] UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 OUTPUT RESULTS #### File Type= MSA Format= score_ascii Name= input.prot.fasta.muscle_rs_0_0.fasta.score_ascii #### File Type= MSA Format= html Name= input.prot.fasta.muscle_rs_0_0.fasta.html #### File Type= MSA Format= score_ascii Name= input.prot.fasta.muscle_rs_0_0.fasta.score_ascii # Command Line: t_coffee -infile input.prot.fasta.muscle_rs_0_0.fasta.aln -output score_ascii -special_mode evaluate -evaluate_mode t_coffee_fast [PROGRAM:T-COFFEE] # T-COFFEE Memory Usage: Current= 29.594 Mb, Max= 31.249 Mb # Results Produced with T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:09 - Revision 1613 - Build 432) # T-COFFEE is available from http://www.tcoffee.org # Register on: https://groups.google.com/group/tcoffee/ FORMAT of file input.prot.fasta.muscle_rs_0_0.fasta.ipi_i.fasta Not Supported[FATAL:T-COFFEE] CLUSTAL W (1.83) multiple sequence alignment C1 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN C2 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN C3 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN C4 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN C5 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN C6 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN ************************************************** C1 HDIHETKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP C2 HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP C3 HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP C4 HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP C5 HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP C6 HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP **** ********************************************* C1 EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD C2 EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD C3 EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD C4 EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD C5 EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD C6 EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD ************************************************** C1 ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER C2 ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER C3 ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER C4 ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER C5 ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER C6 ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER ************************************************** C1 LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT C2 LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT C3 LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT C4 LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT C5 LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT C6 LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT ************************************************** C1 VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS C2 VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS C3 VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS C4 VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS C5 VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS C6 VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS ************************************************** C1 IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE C2 IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE C3 IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE C4 IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE C5 IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE C6 IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE ************************************************** C1 VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF C2 VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF C3 VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF C4 VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF C5 VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF C6 VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF ************************************************** C1 IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA C2 IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA C3 IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA C4 IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA C5 IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA C6 IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA ************************************************** C1 EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH C2 EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH C3 EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH C4 EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH C5 EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH C6 EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH ************************************************** C1 LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL C2 LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL C3 LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL C4 LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL C5 LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL C6 LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL ************************************************** C1 AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK C2 AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK C3 AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK C4 AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK C5 AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK C6 AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK ************************************************** C1 GVIPMALGTCQSPEPSEHQIHRSooo C2 GVIPMALGTCQSPEPSEHQIHRSooo C3 GVIPMALGTCQSPEPSEHQIHRSooo C4 GVIPMALGTCQSPEPSEHQPMVCSGR C5 GVIPMALGTCQSPEPSEHQIHRSooo C6 GVIPMALGTCQSPEPSEHQIHRSooo ******************* . FORMAT of file input.prot.fasta.muscle_rs_0_0.fasta.ipi_bs.fasta Not Supported[FATAL:T-COFFEE] input.prot.fasta.muscle_rs_0_0.fasta.aln I:93 S:100 BS:94 # TC_SIMILARITY_MATRIX_FORMAT_01 # SEQ_INDEX C1 0 # SEQ_INDEX C2 1 # SEQ_INDEX C3 2 # SEQ_INDEX C4 3 # SEQ_INDEX C5 4 # SEQ_INDEX C6 5 # PW_SEQ_DISTANCES BOT 0 1 99.84 C1 C2 99.84 TOP 1 0 99.84 C2 C1 99.84 BOT 0 2 99.84 C1 C3 99.84 TOP 2 0 99.84 C3 C1 99.84 BOT 0 3 98.72 C1 C4 98.72 TOP 3 0 98.72 C4 C1 98.72 BOT 0 4 99.84 C1 C5 99.84 TOP 4 0 99.84 C5 C1 99.84 BOT 0 5 99.84 C1 C6 99.84 TOP 5 0 99.84 C6 C1 99.84 BOT 1 2 100.00 C2 C3 100.00 TOP 2 1 100.00 C3 C2 100.00 BOT 1 3 98.88 C2 C4 98.88 TOP 3 1 98.88 C4 C2 98.88 BOT 1 4 100.00 C2 C5 100.00 TOP 4 1 100.00 C5 C2 100.00 BOT 1 5 100.00 C2 C6 100.00 TOP 5 1 100.00 C6 C2 100.00 BOT 2 3 98.88 C3 C4 98.88 TOP 3 2 98.88 C4 C3 98.88 BOT 2 4 100.00 C3 C5 100.00 TOP 4 2 100.00 C5 C3 100.00 BOT 2 5 100.00 C3 C6 100.00 TOP 5 2 100.00 C6 C3 100.00 BOT 3 4 98.88 C4 C5 98.88 TOP 4 3 98.88 C5 C4 98.88 BOT 3 5 98.88 C4 C6 98.88 TOP 5 3 98.88 C6 C4 98.88 BOT 4 5 100.00 C5 C6 100.00 TOP 5 4 100.00 C6 C5 100.00 AVG 0 C1 * 99.62 AVG 1 C2 * 99.74 AVG 2 C3 * 99.74 AVG 3 C4 * 98.85 AVG 4 C5 * 99.74 AVG 5 C6 * 99.74 TOT TOT * 99.57 CLUSTAL W (1.83) multiple sequence alignment C1 ATGACCCGGTCCCTGGACGAACTCGTCACTAGGGTGGCCTCGAAGTTAAT C2 ATGACCCGGTCCCTGGACGAACTCGTCACTAGGGTGGCCTCGAAGTTAAT C3 ATGACCCGGTCCCTGGACGAACTCGTCACTAGGGTGGCCTCGAAGTTAAT C4 ATGACCCGGTCCCTGGACGAACTCGTCACTAGGGTGGCCTCGAAGTTAAT C5 ATGACCCGGTCCCTGGACGAACTCGTCACTAGGGTGGCCTCGAAGTTAAT C6 ATGACCCGGTCCCTGGACGAACTCGTCACTAGGGTGGCCTCGAAGTTAAT ************************************************** C1 GGCTGCAACAGCGGCCACCGCGGTCACGATCAGCGAAGGGGTGCTGGCTA C2 GGCTGCAACAGCGGCCACCGCGGTCACGATCAGCGAAGGGGTGCTGGCTA C3 GGCTGCAACAGCGGCCACCGCGGTCACGATCAGCGAAGGGGTGCTGGCTA C4 GGCTGCAACAGCGGCCACCGCGGTCACGATCAGCGAAGGGGTGCTGGCTA C5 GGCTGCAACAGCGGCCACCGCGGTCACGATCAGCGAAGGGGTGCTGGCTA C6 GGCTGCAACAGCGGCCACCGCGGTCACGATCAGCGAAGGGGTGCTGGCTA ************************************************** C1 TCCTGGTGGAGCACTTCGGCGTCGATGTGAGTTTTCTTCGTCACAATAAC C2 TCCTGGTGGAGCACTTCGGCGTCGATGTGAGTTTTCTTCGTCACAATAAC C3 TCCTGGTGGAGCACTTCGGCGTCGATGTGAGTTTTCTTCGTCACAATAAC C4 TCCTGGTGGAGCACTTCGGCGTCGATGTGAGTTTTCTTCGTCACAATAAC C5 TCCTGGTGGAGCACTTCGGCGTCGATGTGAGTTTTCTTCGTCACAATAAC C6 TCCTGGTGGAGCACTTCGGCGTCGATGTGAGTTTTCTTCGTCACAATAAC ************************************************** C1 CACGATATTCACGAGACCAAGCTGATCGTGGAATGGCCGCCGCGTGACTA C2 CACGATATTCACGCGACCAAGCTGATCGTGGAATGGCCGCCGCGTGACTA C3 CACGATATTCACGCGACCAAGCTGATCGTGGAATGGCCGCCGCGTGACTA C4 CACGATATTCACGCGACCAAGCTGATCGTGGAATGGCCGCCGCGTGACTA C5 CACGATATTCACGCGACCAAGCTGATCGTGGAATGGCCGCCGCGTGACTA C6 CACGATATTCACGCGACCAAGCTGATCGTGGAATGGCCGCCGCGTGACTA *************.************************************ C1 CGTGCCTGATCCTGACCCGATCGGTGTGGTGTATTTCGCCGACGCCGACC C2 CGTGCCTGATCCTGACCCGATCGGTGTGGTGTATTTCGCCGACGCCGACC C3 CGTGCCTGATCCTGACCCGATCGGTGTGGTGTATTTCGCCGACGCCGACC C4 CGTGCCTGATCCTGACCCGATCGGTGTGGTGTATTTCGCCGACGCCGACC C5 CGTGCCTGATCCTGACCCGATCGGTGTGGTGTATTTCGCCGACGCCGACC C6 CGTGCCTGATCCTGACCCGATCGGTGTGGTGTATTTCGCCGACGCCGACC ************************************************** C1 CGGTTTTTGCTATGGCCGAGTATCTCAAAGAACCGGCGGTTTTGCGGCCC C2 CGGTTTTTGCTATGGCCGAGTATCTCAAAGAACCGGCGGTTTTGCGGCCC C3 CGGTTTTTGCTATGGCCGAGTATCTCAAAGAACCGGCGGTTTTGCGGCCC C4 CGGTTTTTGCTATGGCCGAGTATCTCAAAGAACCGGCGGTTTTGCGGCCC C5 CGGTTTTTGCTATGGCCGAGTATCTCAAAGAACCGGCGGTTTTGCGGCCC C6 CGGTTTTTGCTATGGCCGAGTATCTCAAAGAACCGGCGGTTTTGCGGCCC ************************************************** C1 GAGCCGGCCAATGCCGACTATCAGCGTCGCATCGAGGAGGGCGCCTCTGT C2 GAGCCGGCCAATGCCGACTATCAGCGTCGCATCGAGGAGGGCGCCTCTGT C3 GAGCCGGCCAATGCCGACTATCAGCGTCGCATCGAGGAGGGCGCCTCTGT C4 GAGCCGGCCAATGCCGACTATCAGCGTCGCATCGAGGAGGGCGCCTCTGT C5 GAGCCGGCCAATGCCGACTATCAGCGTCGCATCGAGGAGGGCGCCTCTGT C6 GAGCCGGCCAATGCCGACTATCAGCGTCGCATCGAGGAGGGCGCCTCTGT ************************************************** C1 GCCGGCTGTTTCCCTGGCGTGTGTTCCGTTGCTGTCCGGAGAAATCACCA C2 GCCGGCTGTTTCCCTGGCGTGTGTTCCGTTGCTGTCCGGAGAAATCACCA C3 GCCGGCTGTTTCCCTGGCGTGTGTTCCGTTGCTGTCCGGAGAAATCACCA C4 GCCGGCTGTTTCCCTGGCGTGTGTTCCGTTGCTGTCCGGAGAAATCACCA C5 GCCGGCTGTTTCCCTGGCGTGTGTTCCGTTGCTGTCCGGAGAAATCACCA C6 GCCGGCTGTTTCCCTGGCGTGTGTTCCGTTGCTGTCCGGAGAAATCACCA ************************************************** C1 CCGGTGTCCTCGGATTCGTTAAGTACGGCGACCGGGAATGGCACGACGAT C2 CCGGTGTCCTCGGATTCGTTAAGTACGGCGACCGGGAATGGCACGACGAT C3 CCGGTGTCCTCGGATTCGTTAAGTACGGCGACCGGGAATGGCACGACGAT C4 CCGGTGTCCTCGGATTCGTTAAGTACGGCGACCGGGAATGGCACGACGAT C5 CCGGTGTCCTCGGATTCGTTAAGTACGGCGACCGGGAATGGCACGACGAT C6 CCGGTGTCCTCGGATTCGTTAAGTACGGCGACCGGGAATGGCACGACGAT ************************************************** C1 GAGTTGCGCGCGCTGCAGGCGATCGCAACTCTTTTCGCCCAGCTGCAGGC C2 GAGTTGCGCGCGCTGCAGGCGATCGCAACTCTTTTCGCCCAGCTGCAGGC C3 GAGTTGCGCGCGCTGCAGGCGATCGCAACTCTTTTCGCCCAGCTGCAGGC C4 GAGTTGCGCGCGCTGCAGGCGATCGCAACTCTTTTCGCCCAGCTGCAGGC C5 GAGTTGCGCGCGCTGCAGGCGATCGCAACTCTTTTCGCCCAGCTGCAGGC C6 GAGTTGCGCGCGCTGCAGGCGATCGCAACTCTTTTCGCCCAGCTGCAGGC ************************************************** C1 CCGCATCGTTGCCGAAGAACAATTGCGTTACCTGGCCGAACACGATGATC C2 CCGCATCGTTGCCGAAGAACAATTGCGTTACCTGGCCGAACACGATGATC C3 CCGCATCGTTGCCGAAGAACAATTGCGTTACCTGGCCGAACACGATGATC C4 CCGCATCGTTGCCGAAGAACAATTGCGTTACCTGGCCGAACACGATGATC C5 CCGCATCGTTGCCGAAGAACAATTGCGTTACCTGGCCGAACACGATGATC C6 CCGCATCGTTGCCGAAGAACAATTGCGTTACCTGGCCGAACACGATGATC ************************************************** C1 TCACAGGGCTGCTGAATCGCCGAGCCCTGATCGCGCACCTCGATGAGAGG C2 TCACAGGGCTGCTGAATCGCCGAGCCCTGATCGCGCACCTCGATGAGAGG C3 TCACAGGGCTGCTGAATCGCCGAGCCCTGATCGCGCACCTCGATGAGAGG C4 TCACAGGGCTGCTGAATCGCCGAGCCCTGATCGCGCACCTCGATGAGAGG C5 TCACAGGGCTGCTGAATCGCCGAGCCCTGATCGCGCACCTCGATGAGAGG C6 TCACAGGGCTGCTGAATCGCCGAGCCCTGATCGCGCACCTCGATGAGAGG ************************************************** C1 CTGGCCGACGGTCAGCGCGGCCCGGTGACGTTGCTGTTCCTTGGCCTCGA C2 CTGGCCGACGGTCAGCGCGGCCCGGTGACGTTGCTGTTCCTTGGCCTCGA C3 CTGGCCGACGGTCAGCGCGGCCCGGTGACGTTGCTGTTCCTTGGCCTCGA C4 CTGGCCGACGGTCAGCGCGGCCCGGTGACGTTGCTGTTCCTTGGCCTCGA C5 CTGGCCGACGGTCAGCGCGGCCCGGTGACGTTGCTGTTCCTTGGCCTCGA C6 CTGGCCGACGGTCAGCGCGGCCCGGTGACGTTGCTGTTCCTTGGCCTCGA ************************************************** C1 TCGGCTCAAAGCGGTCAACGATTACCTGGGTCACAATGCCGGCGACCGGC C2 TCGGCTCAAAGCGGTCAACGATTACCTGGGTCACAATGCCGGCGACCGGC C3 TCGGCTCAAAGCGGTCAACGATTACCTGGGTCACAATGCCGGCGACCGGC C4 TCGGCTCAAAGCGGTCAACGATTACCTGGGTCACAATGCCGGCGACCGGC C5 TCGGCTCAAAGCGGTCAACGATTACCTGGGTCACAATGCCGGCGACCGGC C6 TCGGCTCAAAGCGGTCAACGATTACCTGGGTCACAATGCCGGCGACCGGC ************************************************** C1 TGATCGAGGTCTTCGCCGATAGGCTGCGCGAGGCTGCTGAAAGCCTAACG C2 TGATCGAGGTCTTCGCCGATAGGCTGCGCGAGGCTGCTGAAAGCCTAACG C3 TGATCGAGGTCTTCGCCGATAGGCTGCGCGAGGCTGCTGAAAGCCTAACG C4 TGATCGAGGTCTTCGCCGATAGGCTGCGCGAGGCTGCTGAAAGCCTAACG C5 TGATCGAGGTCTTCGCCGATAGGCTGCGCGAGGCTGCTGAAAGCCTAACG C6 TGATCGAGGTCTTCGCCGATAGGCTGCGCGAGGCTGCTGAAAGCCTAACG ************************************************** C1 GTTATTGCCCGTTTCGGCGGAGACGAGTTTGTCGTAGTGCCCGCTGAGTC C2 GTTATTGCCCGTTTCGGCGGAGACGAGTTTGTCGTAGTGCCCGCTGAGTC C3 GTTATTGCCCGTTTCGGCGGAGACGAGTTTGTCGTAGTGCCCGCTGAGTC C4 GTTATTGCCCGTTTCGGCGGAGACGAGTTTGTCGTAGTGCCCGCTGAGTC C5 GTTATTGCCCGTTTCGGCGGAGACGAGTTTGTCGTAGTGCCCGCTGAGTC C6 GTTATTGCCCGTTTCGGCGGAGACGAGTTTGTCGTAGTGCCCGCTGAGTC ************************************************** C1 GGTGTCGGTTGATGTTGCAGAGTCGTTTGCCCATCGCTTGCAGACGCGGC C2 GGTGTCGGTTGATGTTGCAGAGTCGTTTGCCCATCGCTTGCAGACGCGGC C3 GGTGTCGGTTGATGTTGCAGAGTCGTTTGCCCATCGCTTGCAGACGCGGC C4 GGTGTCGGTTGATGTTGCAGAGTCGTTTGCCCATCGCTTGCAGACGCGGC C5 GGTGTCGGTTGATGTTGCAGAGTCGTTTGCCCATCGCTTGCAGACGCGGC C6 GGTGTCGGTTGATGTTGCAGAGTCGTTTGCCCATCGCTTGCAGACGCGGC ************************************************** C1 TTCAAAAGCAAGTGGTGATCGACGGCGAAATACTCACCCGCACCGTCAGC C2 TTCAAAAGCAAGTGGTGATCGACGGCGAAATACTCACCCGCACCGTCAGC C3 TTCAAAAGCAAGTGGTGATCGACGGCGAAATACTCACCCGCACCGTCAGC C4 TTCAAAAGCAAGTGGTGATCGACGGCGAAATACTCACCCGCACCGTCAGC C5 TTCAAAAGCAAGTGGTGATCGACGGCGAAATACTCACCCGCACCGTCAGC C6 TTCAAAAGCAAGTGGTGATCGACGGCGAAATACTCACCCGCACCGTCAGC ************************************************** C1 ATTGGTGTTGCCACCGGTCTTCCGGGACGGGATACCACGTCGGATCTGCT C2 ATTGGTGTTGCCACCGGTCTTCCGGGACGGGATACCACGTCGGATCTGCT C3 ATTGGTGTTGCCACCGGTCTTCCGGGACGGGATACCACGTCGGATCTGCT C4 ATTGGTGTTGCCACCGGTCTTCCGGGACGGGATACCACGTCGGATCTGCT C5 ATTGGTGTTGCCACCGGTCTTCCGGGACGGGATACCACGTCGGATCTGCT C6 ATTGGTGTTGCCACCGGTCTTCCGGGACGGGATACCACGTCGGATCTGCT ************************************************** C1 ACGTTGGGCTGATCACGCGGCGCTGTCGGCGAAAAGCGACGGCAGCAAGG C2 ACGTTGGGCTGATCACGCGGCGCTGTCGGCGAAAAGCGACGGCAGCAAGG C3 ACGTTGGGCTGATCACGCGGCGCTGTCGGCGAAAAGCGACGGCAGCAAGG C4 ACGTTGGGCTGATCACGCGGCGCTGTCGGCGAAAAGCGACGGCAGCAAGG C5 ACGTTGGGCTGATCACGCGGCGCTGTCGGCGAAAAGCGACGGCAGCAAGG C6 ACGTTGGGCTGATCACGCGGCGCTGTCGGCGAAAAGCGACGGCAGCAAGG ************************************************** C1 TCGTGGTTCTTGACCACGGGATCAGCGCACAGCATACGCTGAGAACTGAG C2 TCGTGGTTCTTGACCACGGGATCAGCGCACAGCATACGCTGAGAACTGAG C3 TCGTGGTTCTTGACCACGGGATCAGCGCACAGCATACGCTGAGAACTGAG C4 TCGTGGTTCTTGACCACGGGATCAGCGCACAGCATACGCTGAGAACTGAG C5 TCGTGGTTCTTGACCACGGGATCAGCGCACAGCATACGCTGAGAACTGAG C6 TCGTGGTTCTTGACCACGGGATCAGCGCACAGCATACGCTGAGAACTGAG ************************************************** C1 GTTGAACTGCACTTAGCAGGGATGATCGATACTGACCTGGTGCTGCACTA C2 GTTGAACTGCACTTAGCAGGGATGATCGATACTGACCTGGTGCTGCACTA C3 GTTGAACTGCACTTAGCAGGGATGATCGATACTGACCTGGTGCTGCACTA C4 GTTGAACTGCACTTAGCAGGGATGATCGATACTGACCTGGTGCTGCACTA C5 GTTGAACTGCACTTAGCAGGGATGATCGATACTGACCTGGTGCTGCACTA C6 GTTGAACTGCACTTAGCAGGGATGATCGATACTGACCTGGTGCTGCACTA ************************************************** C1 CCTTCCTGAGGTAGACATGAGTACCGGCAAAGTCTTGGGCACCGAGGCCT C2 CCTTCCTGAGGTAGACATGAGTACCGGCAAAGTCTTGGGCACCGAGGCCT C3 CCTTCCTGAGGTAGACATGAGTACCGGCAAAGTCTTGGGCACCGAGGCCT C4 CCTTCCTGAGGTAGACATGAGTACCGGCAAAGTCTTGGGCACCGAGGCCT C5 CCTTCCTGAGGTAGACATGAGTACCGGCAAAGTCTTGGGCACCGAGGCCT C6 CCTTCCTGAGGTAGACATGAGTACCGGCAAAGTCTTGGGCACCGAGGCCT ************************************************** C1 TGGTGCGCTGGCAGCACCCGACACGGGGGTTGCTATTTCCCGATTCATTT C2 TGGTGCGCTGGCAGCACCCGACACGGGGGTTGCTATTTCCCGATTCATTT C3 TGGTGCGCTGGCAGCACCCGACACGGGGGTTGCTATTTCCCGATTCATTT C4 TGGTGCGCTGGCAGCACCCGACACGGGGGTTGCTATTTCCCGATTCATTT C5 TGGTGCGCTGGCAGCACCCGACACGGGGGTTGCTATTTCCCGATTCATTT C6 TGGTGCGCTGGCAGCACCCGACACGGGGGTTGCTATTTCCCGATTCATTT ************************************************** C1 ATCCCAGTGGCGGAATCGATTAATCTAGCAGGCAAGCTGGGCCGGATGGT C2 ATCCCAGTGGCGGAATCGATTAATCTAGCAGGCAAGCTGGGCCGGATGGT C3 ATCCCAGTGGCGGAATCGATTAATCTAGCAGGCAAGCTGGGCCGGATGGT C4 ATCCCAGTGGCGGAATCGATTAATCTAGCAGGCAAGCTGGGCCGGATGGT C5 ATCCCAGTGGCGGAATCGATTAATCTAGCAGGCAAGCTGGGCCGGATGGT C6 ATCCCAGTGGCGGAATCGATTAATCTAGCAGGCAAGCTGGGCCGGATGGT ************************************************** C1 GATGCACTCGGCATGTGCGGAATTCAGTCGATGGCGCTCAGCCGGCGTGG C2 GATGCACTCGGCATGTGCGGAATTCAGTCGATGGCGCTCAGCCGGCGTGG C3 GATGCACTCGGCATGTGCGGAATTCAGTCGATGGCGCTCAGCCGGCGTGG C4 GATGCACTCGGCATGTGCGGAATTCAGTCGATGGCGCTCAGCCGGCGTGG C5 GATGCACTCGGCATGTGCGGAATTCAGTCGATGGCGCTCAGCCGGCGTGG C6 GATGCACTCGGCATGTGCGGAATTCAGTCGATGGCGCTCAGCCGGCGTGG ************************************************** C1 GACTTGATGCGCTGTTGCGCATTAATGTCTCGCCAGTACAGTTGGTTGCT C2 GACTTGATGCGCTGTTGCGCATTAATGTCTCGCCAGTACAGTTGGTTGCT C3 GACTTGATGCGCTGTTGCGCATTAATGTCTCGCCAGTACAGTTGGTTGCT C4 GACTTGATGCGCTGTTGCGCATTAATGTCTCGCCAGTACAGTTGGTTGCT C5 GACTTGATGCGCTGTTGCGCATTAATGTCTCGCCAGTACAGTTGGTTGCT C6 GACTTGATGCGCTGTTGCGCATTAATGTCTCGCCAGTACAGTTGGTTGCT ************************************************** C1 GAAGGTTTCGTTGACAACGTGGCTGGCACTCTCGACGAGTTCGGTCTCGA C2 GAAGGTTTCGTTGACAACGTGGCTGGCACTCTCGACGAGTTCGGTCTCGA C3 GAAGGTTTCGTTGACAACGTGGCTGGCACTCTCGACGAGTTCGGTCTCGA C4 GAAGGTTTCGTTGACAACGTGGCTGGCACTCTCGACGAGTTCGGTCTCGA C5 GAAGGTTTCGTTGACAACGTGGCTGGCACTCTCGACGAGTTCGGTCTCGA C6 GAAGGTTTCGTTGACAACGTGGCTGGCACTCTCGACGAGTTCGGTCTCGA ************************************************** C1 CGGCAGCATGGTGTGTCTGGAGATCACAGAGAATGTTGTGGTCCAAAACA C2 CGGCAGCATGGTGTGTCTGGAGATCACAGAGAATGTTGTGGTCCAAAACA C3 CGGCAGCATGGTGTGTCTGGAGATCACAGAGAATGTTGTGGTCCAAAACA C4 CGGCAGCATGGTGTGTCTGGAGATCACAGAGAATGTTGTGGTCCAAAACA C5 CGGCAGCATGGTGTGTCTGGAGATCACAGAGAATGTTGTGGTCCAAAACA C6 CGGCAGCATGGTGTGTCTGGAGATCACAGAGAATGTTGTGGTCCAAAACA ************************************************** C1 TCGATGCCACTCGCAAGACACTTGCCGGACTCAAGGAGGTCGGAGTGCAC C2 TCGATGCCACTCGCAAGACACTTGCCGGACTCAAGGAGGTCGGAGTGCAC C3 TCGATGCCACTCGCAAGACACTTGCCGGACTCAAGGAGGTCGGAGTGCAC C4 TCGATGCCACTCGCAAGACACTTGCCGGACTCAAGGAGGTCGGAGTGCAC C5 TCGATGCCACTCGCAAGACACTTGCCGGACTCAAGGAGGTCGGAGTGCAC C6 TCGATGCCACTCGCAAGACACTTGCCGGACTCAAGGAGGTCGGAGTGCAC ************************************************** C1 CTGGCTATCGACGACTTCGGTACCGGTTACAGCGTGTTGACCCATTTGAA C2 CTGGCTATCGACGACTTCGGTACCGGTTACAGCGTGTTGACCCATTTGAA C3 CTGGCTATCGACGACTTCGGTACCGGTTACAGCGTGTTGACCCATTTGAA C4 CTGGCTATCGACGACTTCGGTACCGGTTACAGCGTGTTGACCCATTTGAA C5 CTGGCTATCGACGACTTCGGTACCGGTTACAGCGTGTTGACCCATTTGAA C6 CTGGCTATCGACGACTTCGGTACCGGTTACAGCGTGTTGACCCATTTGAA ************************************************** C1 ATCCCTGCCGGTGGACACCATCAAAATCGATAAGAGCTTCGTGGCCGAAC C2 ATCCCTGCCGGTGGACACCATCAAAATCGATAAGAGCTTCGTGGCCGAAC C3 ATCCCTGCCGGTGGACACCATCAAAATCGATAAGAGCTTCGTGGCCGAAC C4 ATCCCTGCCGGTGGACACCATCAAAATCGATAAGAGCTTCGTGGCCGAAC C5 ATCCCTGCCGGTGGACACCATCAAAATCGATAAGAGCTTCGTGGCCGAAC C6 ATCCCTGCCGGTGGACACCATCAAAATCGATAAGAGCTTCGTGGCCGAAC ************************************************** C1 TGGGCAGCAACGCAAGTGATCTAGCGATCGTGCGGGCGATCATGGCGCTA C2 TGGGCAGCAACGCAAGTGATCTAGCGATCGTGCGGGCGATCATGGCGCTA C3 TGGGCAGCAACGCAAGTGATCTAGCGATCGTGCGGGCGATCATGGCGCTA C4 TGGGCAGCAACGCAAGTGATCTAGCGATCGTGCGGGCGATCATGGCGCTA C5 TGGGCAGCAACGCAAGTGATCTAGCGATCGTGCGGGCGATCATGGCGCTA C6 TGGGCAGCAACGCAAGTGATCTAGCGATCGTGCGGGCGATCATGGCGCTA ************************************************** C1 GCCAAGGAATTTGAACTCGAAGTCGTCGCTGAAGGCGTCGAGACTGCCGT C2 GCCAAGGAATTTGAACTCGAAGTCGTCGCTGAAGGCGTCGAGACTGCCGT C3 GCCAAGGAATTTGAACTCGAAGTCGTCGCTGAAGGCGTCGAGACTGCCGT C4 GCCAAGGAATTTGAACTCGAAGTCGTCGCTGAAGGCGTCGAGACTGCCGT C5 GCCAAGGAATTTGAACTCGAAGTCGTCGCTGAAGGCGTCGAGACTGCCGT C6 GCCAAGGAATTTGAACTCGAAGTCGTCGCTGAAGGCGTCGAGACTGCCGT ************************************************** C1 TGCAGCGCAGGTGCTGCTGGAGTTAGGGTGCAACCGTGCGCAGGGCTTTC C2 TGCAGCGCAGGTGCTGCTGGAGTTAGGGTGCAACCGTGCGCAGGGCTTTC C3 TGCAGCGCAGGTGCTGCTGGAGTTAGGGTGCAACCGTGCGCAGGGCTTTC C4 TGCAGCGCAGGTGCTGCTGGAGTTAGGGTGCAACCGTGCGCAGGGCTTTC C5 TGCAGCGCAGGTGCTGCTGGAGTTAGGGTGCAACCGTGCGCAGGGCTTTC C6 TGCAGCGCAGGTGCTGCTGGAGTTAGGGTGCAACCGTGCGCAGGGCTTTC ************************************************** C1 TGCTCTCACGTCCCGTCGACGGTGCGGCGATGGAATCTCTGCTGGCAAAA C2 TGCTCTCACGTCCCGTCGACGGTGCGGCGATGGAATCTCTGCTGGCAAAA C3 TGCTCTCACGTCCCGTCGACGGTGCGGCGATGGAATCTCTGCTGGCAAAA C4 TGCTCTCACGTCCCGTCGACGGTGCGGCGATGGAATCTCTGCTGGCAAAA C5 TGCTCTCACGTCCCGTCGACGGTGCGGCGATGGAATCTCTGCTGGCAAAA C6 TGCTCTCACGTCCCGTCGACGGTGCGGCGATGGAATCTCTGCTGGCAAAA ************************************************** C1 GGTGTGATACCCATGGCGCTTGGCACATGTCAAAGCCCGGAGCCGAGCGA C2 GGTGTGATACCCATGGCGCTTGGCACATGTCAAAGCCCGGAGCCGAGCGA C3 GGTGTGATACCCATGGCGCTTGGCACATGTCAAAGCCCGGAGCCGAGCGA C4 GGTGTGATACCCATGGCGCTTGGCACATGTCAAAGCCCGGAGCCGAGCGA C5 GGTGTGATACCCATGGCGCTTGGCACATGTCAAAGCCCGGAGCCGAGCGA C6 GGTGTGATACCCATGGCGCTTGGCACATGTCAAAGCCCGGAGCCGAGCGA ************************************************** C1 ACACCAGATACACCGATCG--------- C2 ACACCAGATACACCGATCG--------- C3 ACACCAGATACACCGATCG--------- C4 ACACCAGCCCATGGTGTGCTCGGGCCGG C5 ACACCAGATACACCGATCG--------- C6 ACACCAGATACACCGATCG--------- *******. ..: .* >C1 ATGACCCGGTCCCTGGACGAACTCGTCACTAGGGTGGCCTCGAAGTTAAT GGCTGCAACAGCGGCCACCGCGGTCACGATCAGCGAAGGGGTGCTGGCTA TCCTGGTGGAGCACTTCGGCGTCGATGTGAGTTTTCTTCGTCACAATAAC CACGATATTCACGAGACCAAGCTGATCGTGGAATGGCCGCCGCGTGACTA CGTGCCTGATCCTGACCCGATCGGTGTGGTGTATTTCGCCGACGCCGACC CGGTTTTTGCTATGGCCGAGTATCTCAAAGAACCGGCGGTTTTGCGGCCC GAGCCGGCCAATGCCGACTATCAGCGTCGCATCGAGGAGGGCGCCTCTGT GCCGGCTGTTTCCCTGGCGTGTGTTCCGTTGCTGTCCGGAGAAATCACCA CCGGTGTCCTCGGATTCGTTAAGTACGGCGACCGGGAATGGCACGACGAT GAGTTGCGCGCGCTGCAGGCGATCGCAACTCTTTTCGCCCAGCTGCAGGC CCGCATCGTTGCCGAAGAACAATTGCGTTACCTGGCCGAACACGATGATC TCACAGGGCTGCTGAATCGCCGAGCCCTGATCGCGCACCTCGATGAGAGG CTGGCCGACGGTCAGCGCGGCCCGGTGACGTTGCTGTTCCTTGGCCTCGA TCGGCTCAAAGCGGTCAACGATTACCTGGGTCACAATGCCGGCGACCGGC TGATCGAGGTCTTCGCCGATAGGCTGCGCGAGGCTGCTGAAAGCCTAACG GTTATTGCCCGTTTCGGCGGAGACGAGTTTGTCGTAGTGCCCGCTGAGTC GGTGTCGGTTGATGTTGCAGAGTCGTTTGCCCATCGCTTGCAGACGCGGC TTCAAAAGCAAGTGGTGATCGACGGCGAAATACTCACCCGCACCGTCAGC ATTGGTGTTGCCACCGGTCTTCCGGGACGGGATACCACGTCGGATCTGCT ACGTTGGGCTGATCACGCGGCGCTGTCGGCGAAAAGCGACGGCAGCAAGG TCGTGGTTCTTGACCACGGGATCAGCGCACAGCATACGCTGAGAACTGAG GTTGAACTGCACTTAGCAGGGATGATCGATACTGACCTGGTGCTGCACTA CCTTCCTGAGGTAGACATGAGTACCGGCAAAGTCTTGGGCACCGAGGCCT TGGTGCGCTGGCAGCACCCGACACGGGGGTTGCTATTTCCCGATTCATTT ATCCCAGTGGCGGAATCGATTAATCTAGCAGGCAAGCTGGGCCGGATGGT GATGCACTCGGCATGTGCGGAATTCAGTCGATGGCGCTCAGCCGGCGTGG GACTTGATGCGCTGTTGCGCATTAATGTCTCGCCAGTACAGTTGGTTGCT GAAGGTTTCGTTGACAACGTGGCTGGCACTCTCGACGAGTTCGGTCTCGA CGGCAGCATGGTGTGTCTGGAGATCACAGAGAATGTTGTGGTCCAAAACA TCGATGCCACTCGCAAGACACTTGCCGGACTCAAGGAGGTCGGAGTGCAC CTGGCTATCGACGACTTCGGTACCGGTTACAGCGTGTTGACCCATTTGAA ATCCCTGCCGGTGGACACCATCAAAATCGATAAGAGCTTCGTGGCCGAAC TGGGCAGCAACGCAAGTGATCTAGCGATCGTGCGGGCGATCATGGCGCTA GCCAAGGAATTTGAACTCGAAGTCGTCGCTGAAGGCGTCGAGACTGCCGT TGCAGCGCAGGTGCTGCTGGAGTTAGGGTGCAACCGTGCGCAGGGCTTTC TGCTCTCACGTCCCGTCGACGGTGCGGCGATGGAATCTCTGCTGGCAAAA GGTGTGATACCCATGGCGCTTGGCACATGTCAAAGCCCGGAGCCGAGCGA ACACCAGATACACCGATCG--------- >C2 ATGACCCGGTCCCTGGACGAACTCGTCACTAGGGTGGCCTCGAAGTTAAT GGCTGCAACAGCGGCCACCGCGGTCACGATCAGCGAAGGGGTGCTGGCTA TCCTGGTGGAGCACTTCGGCGTCGATGTGAGTTTTCTTCGTCACAATAAC CACGATATTCACGCGACCAAGCTGATCGTGGAATGGCCGCCGCGTGACTA CGTGCCTGATCCTGACCCGATCGGTGTGGTGTATTTCGCCGACGCCGACC CGGTTTTTGCTATGGCCGAGTATCTCAAAGAACCGGCGGTTTTGCGGCCC GAGCCGGCCAATGCCGACTATCAGCGTCGCATCGAGGAGGGCGCCTCTGT GCCGGCTGTTTCCCTGGCGTGTGTTCCGTTGCTGTCCGGAGAAATCACCA CCGGTGTCCTCGGATTCGTTAAGTACGGCGACCGGGAATGGCACGACGAT GAGTTGCGCGCGCTGCAGGCGATCGCAACTCTTTTCGCCCAGCTGCAGGC CCGCATCGTTGCCGAAGAACAATTGCGTTACCTGGCCGAACACGATGATC TCACAGGGCTGCTGAATCGCCGAGCCCTGATCGCGCACCTCGATGAGAGG CTGGCCGACGGTCAGCGCGGCCCGGTGACGTTGCTGTTCCTTGGCCTCGA TCGGCTCAAAGCGGTCAACGATTACCTGGGTCACAATGCCGGCGACCGGC TGATCGAGGTCTTCGCCGATAGGCTGCGCGAGGCTGCTGAAAGCCTAACG GTTATTGCCCGTTTCGGCGGAGACGAGTTTGTCGTAGTGCCCGCTGAGTC GGTGTCGGTTGATGTTGCAGAGTCGTTTGCCCATCGCTTGCAGACGCGGC TTCAAAAGCAAGTGGTGATCGACGGCGAAATACTCACCCGCACCGTCAGC ATTGGTGTTGCCACCGGTCTTCCGGGACGGGATACCACGTCGGATCTGCT ACGTTGGGCTGATCACGCGGCGCTGTCGGCGAAAAGCGACGGCAGCAAGG TCGTGGTTCTTGACCACGGGATCAGCGCACAGCATACGCTGAGAACTGAG GTTGAACTGCACTTAGCAGGGATGATCGATACTGACCTGGTGCTGCACTA CCTTCCTGAGGTAGACATGAGTACCGGCAAAGTCTTGGGCACCGAGGCCT TGGTGCGCTGGCAGCACCCGACACGGGGGTTGCTATTTCCCGATTCATTT ATCCCAGTGGCGGAATCGATTAATCTAGCAGGCAAGCTGGGCCGGATGGT GATGCACTCGGCATGTGCGGAATTCAGTCGATGGCGCTCAGCCGGCGTGG GACTTGATGCGCTGTTGCGCATTAATGTCTCGCCAGTACAGTTGGTTGCT GAAGGTTTCGTTGACAACGTGGCTGGCACTCTCGACGAGTTCGGTCTCGA CGGCAGCATGGTGTGTCTGGAGATCACAGAGAATGTTGTGGTCCAAAACA TCGATGCCACTCGCAAGACACTTGCCGGACTCAAGGAGGTCGGAGTGCAC CTGGCTATCGACGACTTCGGTACCGGTTACAGCGTGTTGACCCATTTGAA ATCCCTGCCGGTGGACACCATCAAAATCGATAAGAGCTTCGTGGCCGAAC TGGGCAGCAACGCAAGTGATCTAGCGATCGTGCGGGCGATCATGGCGCTA GCCAAGGAATTTGAACTCGAAGTCGTCGCTGAAGGCGTCGAGACTGCCGT TGCAGCGCAGGTGCTGCTGGAGTTAGGGTGCAACCGTGCGCAGGGCTTTC TGCTCTCACGTCCCGTCGACGGTGCGGCGATGGAATCTCTGCTGGCAAAA GGTGTGATACCCATGGCGCTTGGCACATGTCAAAGCCCGGAGCCGAGCGA ACACCAGATACACCGATCG--------- >C3 ATGACCCGGTCCCTGGACGAACTCGTCACTAGGGTGGCCTCGAAGTTAAT GGCTGCAACAGCGGCCACCGCGGTCACGATCAGCGAAGGGGTGCTGGCTA TCCTGGTGGAGCACTTCGGCGTCGATGTGAGTTTTCTTCGTCACAATAAC CACGATATTCACGCGACCAAGCTGATCGTGGAATGGCCGCCGCGTGACTA CGTGCCTGATCCTGACCCGATCGGTGTGGTGTATTTCGCCGACGCCGACC CGGTTTTTGCTATGGCCGAGTATCTCAAAGAACCGGCGGTTTTGCGGCCC GAGCCGGCCAATGCCGACTATCAGCGTCGCATCGAGGAGGGCGCCTCTGT GCCGGCTGTTTCCCTGGCGTGTGTTCCGTTGCTGTCCGGAGAAATCACCA CCGGTGTCCTCGGATTCGTTAAGTACGGCGACCGGGAATGGCACGACGAT GAGTTGCGCGCGCTGCAGGCGATCGCAACTCTTTTCGCCCAGCTGCAGGC CCGCATCGTTGCCGAAGAACAATTGCGTTACCTGGCCGAACACGATGATC TCACAGGGCTGCTGAATCGCCGAGCCCTGATCGCGCACCTCGATGAGAGG CTGGCCGACGGTCAGCGCGGCCCGGTGACGTTGCTGTTCCTTGGCCTCGA TCGGCTCAAAGCGGTCAACGATTACCTGGGTCACAATGCCGGCGACCGGC TGATCGAGGTCTTCGCCGATAGGCTGCGCGAGGCTGCTGAAAGCCTAACG GTTATTGCCCGTTTCGGCGGAGACGAGTTTGTCGTAGTGCCCGCTGAGTC GGTGTCGGTTGATGTTGCAGAGTCGTTTGCCCATCGCTTGCAGACGCGGC TTCAAAAGCAAGTGGTGATCGACGGCGAAATACTCACCCGCACCGTCAGC ATTGGTGTTGCCACCGGTCTTCCGGGACGGGATACCACGTCGGATCTGCT ACGTTGGGCTGATCACGCGGCGCTGTCGGCGAAAAGCGACGGCAGCAAGG TCGTGGTTCTTGACCACGGGATCAGCGCACAGCATACGCTGAGAACTGAG GTTGAACTGCACTTAGCAGGGATGATCGATACTGACCTGGTGCTGCACTA CCTTCCTGAGGTAGACATGAGTACCGGCAAAGTCTTGGGCACCGAGGCCT TGGTGCGCTGGCAGCACCCGACACGGGGGTTGCTATTTCCCGATTCATTT ATCCCAGTGGCGGAATCGATTAATCTAGCAGGCAAGCTGGGCCGGATGGT GATGCACTCGGCATGTGCGGAATTCAGTCGATGGCGCTCAGCCGGCGTGG GACTTGATGCGCTGTTGCGCATTAATGTCTCGCCAGTACAGTTGGTTGCT GAAGGTTTCGTTGACAACGTGGCTGGCACTCTCGACGAGTTCGGTCTCGA CGGCAGCATGGTGTGTCTGGAGATCACAGAGAATGTTGTGGTCCAAAACA TCGATGCCACTCGCAAGACACTTGCCGGACTCAAGGAGGTCGGAGTGCAC CTGGCTATCGACGACTTCGGTACCGGTTACAGCGTGTTGACCCATTTGAA ATCCCTGCCGGTGGACACCATCAAAATCGATAAGAGCTTCGTGGCCGAAC TGGGCAGCAACGCAAGTGATCTAGCGATCGTGCGGGCGATCATGGCGCTA GCCAAGGAATTTGAACTCGAAGTCGTCGCTGAAGGCGTCGAGACTGCCGT TGCAGCGCAGGTGCTGCTGGAGTTAGGGTGCAACCGTGCGCAGGGCTTTC TGCTCTCACGTCCCGTCGACGGTGCGGCGATGGAATCTCTGCTGGCAAAA GGTGTGATACCCATGGCGCTTGGCACATGTCAAAGCCCGGAGCCGAGCGA ACACCAGATACACCGATCG--------- >C4 ATGACCCGGTCCCTGGACGAACTCGTCACTAGGGTGGCCTCGAAGTTAAT GGCTGCAACAGCGGCCACCGCGGTCACGATCAGCGAAGGGGTGCTGGCTA TCCTGGTGGAGCACTTCGGCGTCGATGTGAGTTTTCTTCGTCACAATAAC CACGATATTCACGCGACCAAGCTGATCGTGGAATGGCCGCCGCGTGACTA CGTGCCTGATCCTGACCCGATCGGTGTGGTGTATTTCGCCGACGCCGACC CGGTTTTTGCTATGGCCGAGTATCTCAAAGAACCGGCGGTTTTGCGGCCC GAGCCGGCCAATGCCGACTATCAGCGTCGCATCGAGGAGGGCGCCTCTGT GCCGGCTGTTTCCCTGGCGTGTGTTCCGTTGCTGTCCGGAGAAATCACCA CCGGTGTCCTCGGATTCGTTAAGTACGGCGACCGGGAATGGCACGACGAT GAGTTGCGCGCGCTGCAGGCGATCGCAACTCTTTTCGCCCAGCTGCAGGC CCGCATCGTTGCCGAAGAACAATTGCGTTACCTGGCCGAACACGATGATC TCACAGGGCTGCTGAATCGCCGAGCCCTGATCGCGCACCTCGATGAGAGG CTGGCCGACGGTCAGCGCGGCCCGGTGACGTTGCTGTTCCTTGGCCTCGA TCGGCTCAAAGCGGTCAACGATTACCTGGGTCACAATGCCGGCGACCGGC TGATCGAGGTCTTCGCCGATAGGCTGCGCGAGGCTGCTGAAAGCCTAACG GTTATTGCCCGTTTCGGCGGAGACGAGTTTGTCGTAGTGCCCGCTGAGTC GGTGTCGGTTGATGTTGCAGAGTCGTTTGCCCATCGCTTGCAGACGCGGC TTCAAAAGCAAGTGGTGATCGACGGCGAAATACTCACCCGCACCGTCAGC ATTGGTGTTGCCACCGGTCTTCCGGGACGGGATACCACGTCGGATCTGCT ACGTTGGGCTGATCACGCGGCGCTGTCGGCGAAAAGCGACGGCAGCAAGG TCGTGGTTCTTGACCACGGGATCAGCGCACAGCATACGCTGAGAACTGAG GTTGAACTGCACTTAGCAGGGATGATCGATACTGACCTGGTGCTGCACTA CCTTCCTGAGGTAGACATGAGTACCGGCAAAGTCTTGGGCACCGAGGCCT TGGTGCGCTGGCAGCACCCGACACGGGGGTTGCTATTTCCCGATTCATTT ATCCCAGTGGCGGAATCGATTAATCTAGCAGGCAAGCTGGGCCGGATGGT GATGCACTCGGCATGTGCGGAATTCAGTCGATGGCGCTCAGCCGGCGTGG GACTTGATGCGCTGTTGCGCATTAATGTCTCGCCAGTACAGTTGGTTGCT GAAGGTTTCGTTGACAACGTGGCTGGCACTCTCGACGAGTTCGGTCTCGA CGGCAGCATGGTGTGTCTGGAGATCACAGAGAATGTTGTGGTCCAAAACA TCGATGCCACTCGCAAGACACTTGCCGGACTCAAGGAGGTCGGAGTGCAC CTGGCTATCGACGACTTCGGTACCGGTTACAGCGTGTTGACCCATTTGAA ATCCCTGCCGGTGGACACCATCAAAATCGATAAGAGCTTCGTGGCCGAAC TGGGCAGCAACGCAAGTGATCTAGCGATCGTGCGGGCGATCATGGCGCTA GCCAAGGAATTTGAACTCGAAGTCGTCGCTGAAGGCGTCGAGACTGCCGT TGCAGCGCAGGTGCTGCTGGAGTTAGGGTGCAACCGTGCGCAGGGCTTTC TGCTCTCACGTCCCGTCGACGGTGCGGCGATGGAATCTCTGCTGGCAAAA GGTGTGATACCCATGGCGCTTGGCACATGTCAAAGCCCGGAGCCGAGCGA ACACCAGCCCATGGTGTGCTCGGGCCGG >C5 ATGACCCGGTCCCTGGACGAACTCGTCACTAGGGTGGCCTCGAAGTTAAT GGCTGCAACAGCGGCCACCGCGGTCACGATCAGCGAAGGGGTGCTGGCTA TCCTGGTGGAGCACTTCGGCGTCGATGTGAGTTTTCTTCGTCACAATAAC CACGATATTCACGCGACCAAGCTGATCGTGGAATGGCCGCCGCGTGACTA CGTGCCTGATCCTGACCCGATCGGTGTGGTGTATTTCGCCGACGCCGACC CGGTTTTTGCTATGGCCGAGTATCTCAAAGAACCGGCGGTTTTGCGGCCC GAGCCGGCCAATGCCGACTATCAGCGTCGCATCGAGGAGGGCGCCTCTGT GCCGGCTGTTTCCCTGGCGTGTGTTCCGTTGCTGTCCGGAGAAATCACCA CCGGTGTCCTCGGATTCGTTAAGTACGGCGACCGGGAATGGCACGACGAT GAGTTGCGCGCGCTGCAGGCGATCGCAACTCTTTTCGCCCAGCTGCAGGC CCGCATCGTTGCCGAAGAACAATTGCGTTACCTGGCCGAACACGATGATC TCACAGGGCTGCTGAATCGCCGAGCCCTGATCGCGCACCTCGATGAGAGG CTGGCCGACGGTCAGCGCGGCCCGGTGACGTTGCTGTTCCTTGGCCTCGA TCGGCTCAAAGCGGTCAACGATTACCTGGGTCACAATGCCGGCGACCGGC TGATCGAGGTCTTCGCCGATAGGCTGCGCGAGGCTGCTGAAAGCCTAACG GTTATTGCCCGTTTCGGCGGAGACGAGTTTGTCGTAGTGCCCGCTGAGTC GGTGTCGGTTGATGTTGCAGAGTCGTTTGCCCATCGCTTGCAGACGCGGC TTCAAAAGCAAGTGGTGATCGACGGCGAAATACTCACCCGCACCGTCAGC ATTGGTGTTGCCACCGGTCTTCCGGGACGGGATACCACGTCGGATCTGCT ACGTTGGGCTGATCACGCGGCGCTGTCGGCGAAAAGCGACGGCAGCAAGG TCGTGGTTCTTGACCACGGGATCAGCGCACAGCATACGCTGAGAACTGAG GTTGAACTGCACTTAGCAGGGATGATCGATACTGACCTGGTGCTGCACTA CCTTCCTGAGGTAGACATGAGTACCGGCAAAGTCTTGGGCACCGAGGCCT TGGTGCGCTGGCAGCACCCGACACGGGGGTTGCTATTTCCCGATTCATTT ATCCCAGTGGCGGAATCGATTAATCTAGCAGGCAAGCTGGGCCGGATGGT GATGCACTCGGCATGTGCGGAATTCAGTCGATGGCGCTCAGCCGGCGTGG GACTTGATGCGCTGTTGCGCATTAATGTCTCGCCAGTACAGTTGGTTGCT GAAGGTTTCGTTGACAACGTGGCTGGCACTCTCGACGAGTTCGGTCTCGA CGGCAGCATGGTGTGTCTGGAGATCACAGAGAATGTTGTGGTCCAAAACA TCGATGCCACTCGCAAGACACTTGCCGGACTCAAGGAGGTCGGAGTGCAC CTGGCTATCGACGACTTCGGTACCGGTTACAGCGTGTTGACCCATTTGAA ATCCCTGCCGGTGGACACCATCAAAATCGATAAGAGCTTCGTGGCCGAAC TGGGCAGCAACGCAAGTGATCTAGCGATCGTGCGGGCGATCATGGCGCTA GCCAAGGAATTTGAACTCGAAGTCGTCGCTGAAGGCGTCGAGACTGCCGT TGCAGCGCAGGTGCTGCTGGAGTTAGGGTGCAACCGTGCGCAGGGCTTTC TGCTCTCACGTCCCGTCGACGGTGCGGCGATGGAATCTCTGCTGGCAAAA GGTGTGATACCCATGGCGCTTGGCACATGTCAAAGCCCGGAGCCGAGCGA ACACCAGATACACCGATCG--------- >C6 ATGACCCGGTCCCTGGACGAACTCGTCACTAGGGTGGCCTCGAAGTTAAT GGCTGCAACAGCGGCCACCGCGGTCACGATCAGCGAAGGGGTGCTGGCTA TCCTGGTGGAGCACTTCGGCGTCGATGTGAGTTTTCTTCGTCACAATAAC CACGATATTCACGCGACCAAGCTGATCGTGGAATGGCCGCCGCGTGACTA CGTGCCTGATCCTGACCCGATCGGTGTGGTGTATTTCGCCGACGCCGACC CGGTTTTTGCTATGGCCGAGTATCTCAAAGAACCGGCGGTTTTGCGGCCC GAGCCGGCCAATGCCGACTATCAGCGTCGCATCGAGGAGGGCGCCTCTGT GCCGGCTGTTTCCCTGGCGTGTGTTCCGTTGCTGTCCGGAGAAATCACCA CCGGTGTCCTCGGATTCGTTAAGTACGGCGACCGGGAATGGCACGACGAT GAGTTGCGCGCGCTGCAGGCGATCGCAACTCTTTTCGCCCAGCTGCAGGC CCGCATCGTTGCCGAAGAACAATTGCGTTACCTGGCCGAACACGATGATC TCACAGGGCTGCTGAATCGCCGAGCCCTGATCGCGCACCTCGATGAGAGG CTGGCCGACGGTCAGCGCGGCCCGGTGACGTTGCTGTTCCTTGGCCTCGA TCGGCTCAAAGCGGTCAACGATTACCTGGGTCACAATGCCGGCGACCGGC TGATCGAGGTCTTCGCCGATAGGCTGCGCGAGGCTGCTGAAAGCCTAACG GTTATTGCCCGTTTCGGCGGAGACGAGTTTGTCGTAGTGCCCGCTGAGTC GGTGTCGGTTGATGTTGCAGAGTCGTTTGCCCATCGCTTGCAGACGCGGC TTCAAAAGCAAGTGGTGATCGACGGCGAAATACTCACCCGCACCGTCAGC ATTGGTGTTGCCACCGGTCTTCCGGGACGGGATACCACGTCGGATCTGCT ACGTTGGGCTGATCACGCGGCGCTGTCGGCGAAAAGCGACGGCAGCAAGG TCGTGGTTCTTGACCACGGGATCAGCGCACAGCATACGCTGAGAACTGAG GTTGAACTGCACTTAGCAGGGATGATCGATACTGACCTGGTGCTGCACTA CCTTCCTGAGGTAGACATGAGTACCGGCAAAGTCTTGGGCACCGAGGCCT TGGTGCGCTGGCAGCACCCGACACGGGGGTTGCTATTTCCCGATTCATTT ATCCCAGTGGCGGAATCGATTAATCTAGCAGGCAAGCTGGGCCGGATGGT GATGCACTCGGCATGTGCGGAATTCAGTCGATGGCGCTCAGCCGGCGTGG GACTTGATGCGCTGTTGCGCATTAATGTCTCGCCAGTACAGTTGGTTGCT GAAGGTTTCGTTGACAACGTGGCTGGCACTCTCGACGAGTTCGGTCTCGA CGGCAGCATGGTGTGTCTGGAGATCACAGAGAATGTTGTGGTCCAAAACA TCGATGCCACTCGCAAGACACTTGCCGGACTCAAGGAGGTCGGAGTGCAC CTGGCTATCGACGACTTCGGTACCGGTTACAGCGTGTTGACCCATTTGAA ATCCCTGCCGGTGGACACCATCAAAATCGATAAGAGCTTCGTGGCCGAAC TGGGCAGCAACGCAAGTGATCTAGCGATCGTGCGGGCGATCATGGCGCTA GCCAAGGAATTTGAACTCGAAGTCGTCGCTGAAGGCGTCGAGACTGCCGT TGCAGCGCAGGTGCTGCTGGAGTTAGGGTGCAACCGTGCGCAGGGCTTTC TGCTCTCACGTCCCGTCGACGGTGCGGCGATGGAATCTCTGCTGGCAAAA GGTGTGATACCCATGGCGCTTGGCACATGTCAAAGCCCGGAGCCGAGCGA ACACCAGATACACCGATCG--------- >C1 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN HDIHETKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK GVIPMALGTCQSPEPSEHQIHRSooo >C2 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK GVIPMALGTCQSPEPSEHQIHRSooo >C3 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK GVIPMALGTCQSPEPSEHQIHRSooo >C4 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK GVIPMALGTCQSPEPSEHQPMVCSGR >C5 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK GVIPMALGTCQSPEPSEHQIHRSooo >C6 MTRSLDELVTRVASKLMAATAATAVTISEGVLAILVEHFGVDVSFLRHNN HDIHATKLIVEWPPRDYVPDPDPIGVVYFADADPVFAMAEYLKEPAVLRP EPANADYQRRIEEGASVPAVSLACVPLLSGEITTGVLGFVKYGDREWHDD ELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDER LADGQRGPVTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLT VIARFGGDEFVVVPAESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVS IGVATGLPGRDTTSDLLRWADHAALSAKSDGSKVVVLDHGISAQHTLRTE VELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEALVRWQHPTRGLLFPDSF IPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVSPVQLVA EGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVH LAIDDFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMAL AKEFELEVVAEGVETAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK GVIPMALGTCQSPEPSEHQIHRSooo MrBayes v3.2.2 x64 (Bayesian Analysis of Phylogeny) Distributed under the GNU General Public License Type "help" or "help <command>" for information on the commands that are available. Type "about" for authorship and general information about the program. Executing file "/data/7res/ML1750/batch/allfiles/mrbayes/input.fasta.fasta.mrb" UNIX line termination Longest line length = 63 Parsing file Expecting NEXUS formatted file Reading data block Allocated taxon set Allocated matrix Defining new matrix with 6 taxa and 1878 characters Missing data coded as ? Data matrix is interleaved Data is Dna Gaps coded as - Matching characters coded as . Taxon 1 -> C1 Taxon 2 -> C2 Taxon 3 -> C3 Taxon 4 -> C4 Taxon 5 -> C5 Taxon 6 -> C6 Successfully read matrix Setting default partition (does not divide up characters) Setting model defaults Seed (for generating default start values) = 1579858308 Setting output file names to "/data/7res/ML1750/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run<i>.<p|t>" Exiting data block Reading mrbayes block Setting autoclose to yes Setting nowarnings to yes Defining charset called first_pos Defining charset called second_pos Defining charset called third_pos Defining partition called by_codon Setting by_codon as the partition, dividing characters into 3 parts. Setting model defaults Seed (for generating default start values) = 562958934 Setting Nst to 6 for partition 1 Setting Nst to 6 for partition 2 Setting Nst to 6 for partition 3 Setting Rates to Invgamma for partition 1 Setting Rates to Invgamma for partition 2 Setting Rates to Invgamma for partition 3 Successfully set likelihood model parameters to all applicable data partitions Unlinking Setting number of generations to 1000000 Running Markov chain MCMC stamp = 5483267930 Seed = 332327916 Swapseed = 1579858308 Model settings: Settings for partition 1 -- Datatype = DNA Nucmodel = 4by4 Nst = 6 Substitution rates, expressed as proportions of the rate sum, have a Dirichlet prior (1.00,1.00,1.00,1.00,1.00,1.00) Covarion = No # States = 4 State frequencies have a Dirichlet prior (1.00,1.00,1.00,1.00) Rates = Invgamma Gamma shape parameter is exponentially distributed with parameter (2.00). Proportion of invariable sites is uniformly dist- ributed on the interval (0.00,1.00). Gamma distribution is approximated using 4 categories. Likelihood summarized over all rate categories in each generation. Settings for partition 2 -- Datatype = DNA Nucmodel = 4by4 Nst = 6 Substitution rates, expressed as proportions of the rate sum, have a Dirichlet prior (1.00,1.00,1.00,1.00,1.00,1.00) Covarion = No # States = 4 State frequencies have a Dirichlet prior (1.00,1.00,1.00,1.00) Rates = Invgamma Gamma shape parameter is exponentially distributed with parameter (2.00). Proportion of invariable sites is uniformly dist- ributed on the interval (0.00,1.00). Gamma distribution is approximated using 4 categories. Likelihood summarized over all rate categories in each generation. Settings for partition 3 -- Datatype = DNA Nucmodel = 4by4 Nst = 6 Substitution rates, expressed as proportions of the rate sum, have a Dirichlet prior (1.00,1.00,1.00,1.00,1.00,1.00) Covarion = No # States = 4 State frequencies have a Dirichlet prior (1.00,1.00,1.00,1.00) Rates = Invgamma Gamma shape parameter is exponentially distributed with parameter (2.00). Proportion of invariable sites is uniformly dist- ributed on the interval (0.00,1.00). Gamma distribution is approximated using 4 categories. Likelihood summarized over all rate categories in each generation. Active parameters: Partition(s) Parameters 1 2 3 ------------------------ Revmat 1 1 1 Statefreq 2 2 2 Shape 3 3 4 Pinvar 5 5 5 Ratemultiplier 6 6 6 Topology 7 7 7 Brlens 8 8 8 ------------------------ Parameters can be linked or unlinked across partitions using 'link' and 'unlink' 1 -- Parameter = Revmat{all} Type = Rates of reversible rate matrix Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00) Partitions = All 2 -- Parameter = Pi{all} Type = Stationary state frequencies Prior = Dirichlet Partitions = All 3 -- Parameter = Alpha{1,2} Type = Shape of scaled gamma distribution of site rates Prior = Exponential(2.00) Partitions = 1 and 2 4 -- Parameter = Alpha{3} Type = Shape of scaled gamma distribution of site rates Prior = Exponential(2.00) Partition = 3 5 -- Parameter = Pinvar{all} Type = Proportion of invariable sites Prior = Uniform(0.00,1.00) Partitions = All 6 -- Parameter = Ratemultiplier{all} Type = Partition-specific rate multiplier Prior = Fixed(1.0) Partitions = All 7 -- Parameter = Tau{all} Type = Topology Prior = All topologies equally probable a priori Partitions = All Subparam. = V{all} 8 -- Parameter = V{all} Type = Branch lengths Prior = Unconstrained:Exponential(10.0) Partitions = All The MCMC sampler will use the following moves: With prob. Chain will use move 1.06 % Dirichlet(Revmat{all}) 1.06 % Slider(Revmat{all}) 1.06 % Dirichlet(Pi{all}) 1.06 % Slider(Pi{all}) 2.13 % Multiplier(Alpha{1,2}) 2.13 % Multiplier(Alpha{3}) 2.13 % Slider(Pinvar{all}) 10.64 % ExtSPR(Tau{all},V{all}) 10.64 % ExtTBR(Tau{all},V{all}) 10.64 % NNI(Tau{all},V{all}) 10.64 % ParsSPR(Tau{all},V{all}) 31.91 % Multiplier(V{all}) 10.64 % Nodeslider(V{all}) 4.26 % TLMultiplier(V{all}) Division 1 has 10 unique site patterns Division 2 has 11 unique site patterns Division 3 has 10 unique site patterns Initializing conditional likelihoods Using standard SSE likelihood calculator for division 1 (single-precision) Using standard SSE likelihood calculator for division 2 (single-precision) Using standard SSE likelihood calculator for division 3 (single-precision) Initializing invariable-site conditional likelihoods Initial log likelihoods and log prior probs for run 1: Chain 1 -- -4236.205549 -- -24.965149 Chain 2 -- -4236.222591 -- -24.965149 Chain 3 -- -4236.220803 -- -24.965149 Chain 4 -- -4236.221166 -- -24.965149 Initial log likelihoods and log prior probs for run 2: Chain 1 -- -4236.220803 -- -24.965149 Chain 2 -- -4236.222591 -- -24.965149 Chain 3 -- -4236.222591 -- -24.965149 Chain 4 -- -4236.222595 -- -24.965149 Using a relative burnin of 25.0 % for diagnostics Chain results (1000000 generations requested): 0 -- [-4236.206] (-4236.223) (-4236.221) (-4236.221) * [-4236.221] (-4236.223) (-4236.223) (-4236.223) 500 -- (-2689.184) (-2671.913) (-2685.373) [-2667.270] * [-2684.030] (-2698.441) (-2687.803) (-2690.851) -- 0:00:00 1000 -- (-2677.185) (-2664.432) (-2683.162) [-2667.435] * (-2663.072) [-2670.465] (-2687.117) (-2665.850) -- 0:00:00 1500 -- (-2663.673) (-2670.182) [-2669.248] (-2666.109) * (-2663.143) (-2667.444) (-2666.802) [-2661.253] -- 0:00:00 2000 -- (-2670.091) (-2669.355) [-2664.701] (-2667.987) * (-2671.144) [-2667.166] (-2663.734) (-2667.108) -- 0:00:00 2500 -- (-2678.922) [-2668.358] (-2664.967) (-2669.098) * (-2668.898) (-2664.217) (-2664.661) [-2668.796] -- 0:00:00 3000 -- [-2674.264] (-2666.781) (-2667.253) (-2661.943) * (-2668.159) (-2679.363) (-2669.226) [-2665.870] -- 0:00:00 3500 -- (-2669.339) [-2668.126] (-2671.305) (-2667.747) * (-2668.280) (-2662.652) (-2669.317) [-2666.924] -- 0:00:00 4000 -- (-2669.198) (-2672.326) [-2669.812] (-2673.012) * (-2670.445) [-2670.920] (-2670.705) (-2666.344) -- 0:00:00 4500 -- (-2669.898) (-2665.293) [-2665.996] (-2664.360) * (-2675.310) [-2667.757] (-2672.333) (-2663.991) -- 0:03:41 5000 -- (-2668.453) [-2665.045] (-2666.318) (-2662.203) * (-2671.829) (-2668.911) [-2660.678] (-2669.534) -- 0:03:19 Average standard deviation of split frequencies: 0.081983 5500 -- [-2664.625] (-2667.330) (-2670.029) (-2670.070) * (-2670.899) [-2672.444] (-2674.269) (-2662.337) -- 0:03:00 6000 -- (-2678.837) (-2667.998) [-2668.777] (-2664.720) * (-2665.108) (-2674.458) [-2667.200] (-2668.787) -- 0:02:45 6500 -- (-2665.575) [-2667.756] (-2667.414) (-2664.515) * (-2671.021) (-2688.364) (-2667.039) [-2672.714] -- 0:02:32 7000 -- [-2666.158] (-2667.619) (-2667.144) (-2669.096) * [-2674.895] (-2685.205) (-2666.662) (-2670.075) -- 0:02:21 7500 -- (-2671.454) (-2672.758) (-2672.714) [-2661.317] * [-2665.735] (-2687.258) (-2670.544) (-2665.271) -- 0:02:12 8000 -- (-2670.872) (-2673.475) (-2687.441) [-2662.987] * (-2664.164) (-2681.562) (-2672.991) [-2665.787] -- 0:02:04 8500 -- [-2668.337] (-2672.719) (-2696.428) (-2670.406) * (-2665.765) (-2681.214) [-2667.880] (-2672.540) -- 0:01:56 9000 -- (-2673.265) (-2664.954) (-2674.063) [-2668.075] * (-2674.669) (-2678.316) [-2667.827] (-2666.747) -- 0:01:50 9500 -- (-2668.190) [-2666.010] (-2683.606) (-2671.923) * (-2663.326) (-2683.832) (-2666.583) [-2666.398] -- 0:01:44 10000 -- (-2681.785) (-2666.097) (-2697.523) [-2672.630] * (-2670.189) (-2687.952) (-2669.671) [-2670.843] -- 0:01:39 Average standard deviation of split frequencies: 0.070711 10500 -- (-2680.069) [-2666.064] (-2689.262) (-2666.479) * (-2667.954) (-2683.045) [-2666.062] (-2672.521) -- 0:01:34 11000 -- (-2686.799) (-2669.913) (-2679.273) [-2660.935] * (-2671.361) (-2681.808) [-2671.473] (-2661.113) -- 0:01:29 11500 -- (-2685.210) [-2665.759] (-2682.460) (-2671.414) * (-2671.824) (-2685.707) [-2671.656] (-2669.910) -- 0:01:25 12000 -- (-2690.400) (-2666.904) (-2682.392) [-2664.459] * [-2668.211] (-2680.364) (-2666.947) (-2664.871) -- 0:01:22 12500 -- (-2681.057) [-2673.570] (-2682.234) (-2663.475) * [-2660.761] (-2683.930) (-2668.294) (-2671.190) -- 0:01:19 13000 -- (-2685.882) (-2669.191) (-2685.410) [-2667.185] * (-2664.411) (-2682.603) [-2670.275] (-2665.382) -- 0:01:15 13500 -- (-2686.785) (-2666.875) (-2680.523) [-2668.453] * [-2671.268] (-2690.002) (-2663.566) (-2663.684) -- 0:02:26 14000 -- (-2691.020) (-2668.088) (-2691.673) [-2677.711] * (-2668.988) (-2676.838) [-2668.072] (-2665.925) -- 0:02:20 14500 -- [-2678.114] (-2676.545) (-2684.179) (-2665.776) * (-2666.526) (-2679.571) [-2664.486] (-2666.344) -- 0:02:15 15000 -- [-2674.321] (-2667.140) (-2684.066) (-2670.549) * (-2665.561) (-2682.176) (-2663.666) [-2662.780] -- 0:02:11 Average standard deviation of split frequencies: 0.058926 15500 -- (-2688.846) (-2670.120) (-2682.584) [-2663.084] * (-2666.773) (-2683.696) [-2666.684] (-2664.446) -- 0:02:07 16000 -- (-2682.340) [-2670.814] (-2684.945) (-2670.859) * (-2669.678) (-2686.010) (-2663.726) [-2662.904] -- 0:02:03 16500 -- (-2683.040) [-2667.021] (-2688.004) (-2668.010) * (-2671.414) (-2685.237) [-2664.485] (-2664.449) -- 0:01:59 17000 -- (-2679.480) (-2669.342) (-2687.422) [-2666.047] * [-2672.806] (-2686.515) (-2666.318) (-2669.995) -- 0:01:55 17500 -- (-2680.782) (-2671.391) (-2679.993) [-2666.424] * (-2668.787) (-2692.781) (-2662.535) [-2666.070] -- 0:01:52 18000 -- (-2679.644) [-2664.212] (-2683.812) (-2673.424) * (-2672.884) (-2681.597) [-2668.572] (-2675.598) -- 0:01:49 18500 -- (-2684.909) (-2664.730) (-2685.419) [-2668.297] * (-2671.174) (-2676.722) (-2666.624) [-2669.833] -- 0:01:46 19000 -- (-2681.545) (-2665.471) (-2677.163) [-2670.151] * (-2663.709) (-2686.034) [-2668.318] (-2668.304) -- 0:01:43 19500 -- (-2680.412) (-2670.122) (-2680.726) [-2664.328] * [-2670.228] (-2682.076) (-2662.837) (-2675.149) -- 0:01:40 20000 -- (-2686.051) [-2661.889] (-2683.963) (-2669.316) * (-2666.688) (-2688.595) [-2664.611] (-2671.241) -- 0:01:38 Average standard deviation of split frequencies: 0.051322 20500 -- (-2675.173) (-2670.894) (-2687.093) [-2662.024] * [-2665.316] (-2682.264) (-2667.772) (-2671.803) -- 0:01:35 21000 -- (-2678.204) [-2671.215] (-2681.467) (-2668.689) * (-2666.615) (-2682.040) [-2661.606] (-2668.942) -- 0:01:33 21500 -- (-2684.680) (-2670.581) (-2682.841) [-2664.019] * [-2665.821] (-2680.260) (-2666.433) (-2669.095) -- 0:01:31 22000 -- (-2679.803) (-2665.458) (-2678.853) [-2664.661] * (-2668.914) (-2682.378) [-2663.338] (-2671.830) -- 0:02:13 22500 -- (-2693.559) [-2661.923] (-2684.277) (-2668.940) * (-2665.776) (-2681.743) (-2664.571) [-2666.717] -- 0:02:10 23000 -- (-2692.700) [-2663.609] (-2683.790) (-2673.100) * (-2663.488) (-2677.080) [-2664.765] (-2667.855) -- 0:02:07 23500 -- (-2689.610) (-2667.855) (-2678.243) [-2666.289] * [-2664.924] (-2684.475) (-2667.379) (-2672.158) -- 0:02:04 24000 -- (-2687.891) [-2665.204] (-2680.891) (-2668.816) * [-2667.159] (-2687.255) (-2667.040) (-2673.274) -- 0:02:02 24500 -- (-2687.249) [-2668.531] (-2682.070) (-2667.745) * (-2668.312) (-2688.784) [-2664.973] (-2669.863) -- 0:01:59 25000 -- (-2688.104) (-2665.754) (-2679.467) [-2665.347] * (-2672.964) (-2688.085) [-2668.240] (-2666.259) -- 0:01:57 Average standard deviation of split frequencies: 0.035355 25500 -- (-2680.546) [-2665.639] (-2686.637) (-2666.699) * [-2666.754] (-2686.005) (-2668.548) (-2670.743) -- 0:01:54 26000 -- (-2680.741) (-2662.749) (-2686.952) [-2665.666] * (-2665.607) (-2682.458) [-2662.479] (-2667.750) -- 0:01:52 26500 -- (-2686.650) (-2668.171) (-2684.553) [-2663.249] * (-2670.948) (-2681.748) (-2660.030) [-2670.023] -- 0:01:50 27000 -- (-2685.857) [-2666.303] (-2679.500) (-2668.407) * (-2669.623) (-2674.545) [-2667.063] (-2672.944) -- 0:01:48 27500 -- (-2685.072) (-2672.980) (-2684.913) [-2669.573] * (-2669.232) (-2692.124) (-2668.509) [-2666.150] -- 0:01:46 28000 -- (-2691.491) (-2669.311) (-2686.821) [-2666.082] * [-2663.797] (-2685.473) (-2664.680) (-2665.033) -- 0:01:44 28500 -- (-2685.224) [-2664.904] (-2677.850) (-2666.525) * (-2666.769) (-2684.120) [-2667.868] (-2666.942) -- 0:01:42 29000 -- (-2691.725) [-2668.708] (-2679.029) (-2666.357) * (-2674.080) (-2692.207) [-2662.195] (-2663.341) -- 0:01:40 29500 -- (-2674.336) (-2665.343) (-2680.165) [-2662.024] * (-2676.794) (-2700.071) [-2666.609] (-2668.576) -- 0:01:38 30000 -- (-2683.309) (-2671.264) (-2688.458) [-2667.904] * (-2662.765) (-2688.205) [-2674.060] (-2673.980) -- 0:01:37 Average standard deviation of split frequencies: 0.025364 30500 -- (-2686.081) (-2669.593) (-2677.670) [-2665.536] * (-2668.031) (-2689.010) [-2671.723] (-2669.290) -- 0:01:35 31000 -- (-2687.380) (-2665.210) (-2679.422) [-2667.388] * (-2664.548) (-2692.506) (-2669.192) [-2664.298] -- 0:02:05 31500 -- (-2684.951) [-2665.627] (-2683.720) (-2668.537) * (-2681.786) (-2685.058) [-2665.350] (-2670.294) -- 0:02:02 32000 -- (-2689.138) [-2670.157] (-2681.026) (-2668.589) * (-2684.850) (-2692.987) [-2667.599] (-2674.068) -- 0:02:01 32500 -- (-2677.406) [-2668.845] (-2688.336) (-2663.187) * (-2682.718) (-2677.956) [-2665.152] (-2666.389) -- 0:01:59 33000 -- (-2675.451) (-2665.980) (-2682.327) [-2670.123] * (-2679.237) (-2682.008) [-2671.730] (-2666.237) -- 0:01:57 33500 -- (-2678.658) (-2666.948) (-2682.920) [-2666.378] * (-2683.284) (-2683.364) (-2673.427) [-2670.898] -- 0:01:55 34000 -- (-2687.629) [-2665.155] (-2682.567) (-2666.657) * (-2684.054) (-2683.734) (-2666.515) [-2671.375] -- 0:01:53 34500 -- (-2683.964) [-2663.415] (-2681.940) (-2669.137) * (-2689.006) (-2679.897) [-2663.970] (-2665.518) -- 0:01:51 35000 -- (-2680.182) [-2669.964] (-2676.191) (-2664.078) * (-2682.787) (-2692.561) (-2666.796) [-2666.490] -- 0:01:50 Average standard deviation of split frequencies: 0.028153 35500 -- (-2694.722) [-2668.397] (-2683.548) (-2670.634) * (-2682.196) (-2687.995) [-2665.966] (-2671.545) -- 0:01:48 36000 -- (-2682.400) [-2667.731] (-2675.043) (-2671.464) * (-2682.806) (-2690.141) [-2663.175] (-2669.726) -- 0:01:47 36500 -- (-2682.735) (-2665.731) (-2682.700) [-2661.954] * (-2677.386) (-2687.903) (-2669.641) [-2662.012] -- 0:01:45 37000 -- (-2684.980) (-2666.568) (-2676.432) [-2665.499] * (-2685.286) (-2684.590) [-2665.515] (-2672.912) -- 0:01:44 37500 -- (-2682.751) (-2667.545) (-2683.232) [-2660.722] * (-2680.397) (-2683.514) [-2662.348] (-2666.489) -- 0:01:42 38000 -- (-2689.381) [-2661.658] (-2685.892) (-2667.449) * (-2684.606) (-2684.322) (-2665.215) [-2663.961] -- 0:01:41 38500 -- (-2689.832) [-2668.737] (-2685.021) (-2666.913) * (-2685.064) (-2683.712) [-2670.031] (-2676.012) -- 0:01:39 39000 -- (-2683.684) (-2668.401) (-2680.642) [-2668.042] * (-2687.055) (-2685.738) [-2667.653] (-2666.006) -- 0:02:03 39500 -- (-2684.264) [-2666.397] (-2676.503) (-2668.076) * (-2692.137) (-2686.123) [-2669.077] (-2672.112) -- 0:02:01 40000 -- (-2682.237) [-2670.366] (-2678.352) (-2671.013) * (-2681.749) (-2681.259) (-2667.586) [-2661.679] -- 0:02:00 Average standard deviation of split frequencies: 0.026404 40500 -- (-2680.470) (-2668.243) (-2681.724) [-2670.819] * (-2678.790) (-2681.181) (-2662.644) [-2670.803] -- 0:01:58 41000 -- (-2684.563) [-2662.878] (-2682.451) (-2667.925) * (-2686.148) (-2680.869) (-2660.504) [-2669.565] -- 0:01:56 41500 -- (-2686.423) (-2670.042) (-2682.967) [-2664.423] * (-2686.284) (-2681.337) (-2671.113) [-2665.437] -- 0:01:55 42000 -- (-2684.710) [-2670.045] (-2690.922) (-2677.905) * (-2683.377) (-2686.107) [-2668.039] (-2672.741) -- 0:01:54 42500 -- (-2686.554) [-2670.767] (-2682.271) (-2670.464) * (-2685.385) (-2680.203) [-2671.427] (-2682.860) -- 0:01:52 43000 -- (-2681.556) [-2664.700] (-2680.634) (-2669.211) * (-2685.926) (-2682.858) [-2667.746] (-2675.200) -- 0:01:51 43500 -- (-2681.526) [-2668.624] (-2685.485) (-2662.655) * (-2684.021) [-2681.887] (-2669.440) (-2686.986) -- 0:01:49 44000 -- (-2686.869) [-2672.480] (-2684.337) (-2666.410) * (-2677.854) (-2682.012) [-2667.729] (-2679.802) -- 0:01:48 44500 -- (-2680.410) (-2668.467) (-2684.038) [-2668.345] * (-2686.591) (-2683.782) [-2665.930] (-2676.048) -- 0:01:47 45000 -- (-2677.884) (-2671.326) (-2685.586) [-2668.591] * (-2689.136) (-2682.355) [-2666.633] (-2676.243) -- 0:01:46 Average standard deviation of split frequencies: 0.026132 45500 -- (-2680.913) (-2675.660) (-2679.175) [-2667.338] * (-2680.907) (-2684.106) [-2667.655] (-2681.555) -- 0:01:44 46000 -- (-2682.151) (-2672.311) (-2679.439) [-2665.054] * (-2686.685) (-2684.617) [-2673.917] (-2682.835) -- 0:01:43 46500 -- (-2684.891) (-2670.365) (-2678.612) [-2664.917] * (-2682.701) (-2684.935) [-2670.312] (-2677.943) -- 0:01:42 47000 -- (-2683.778) [-2668.061] (-2677.568) (-2667.058) * (-2684.967) (-2683.850) [-2667.420] (-2677.748) -- 0:02:01 47500 -- (-2685.605) (-2677.472) (-2693.218) [-2669.991] * (-2682.808) [-2683.067] (-2664.435) (-2679.745) -- 0:02:00 48000 -- (-2685.122) [-2670.393] (-2680.777) (-2673.603) * (-2688.292) (-2678.525) (-2666.896) [-2677.708] -- 0:01:59 48500 -- (-2682.337) [-2664.752] (-2685.137) (-2681.631) * (-2690.528) (-2678.497) [-2667.532] (-2679.143) -- 0:01:57 49000 -- (-2687.106) [-2667.949] (-2682.183) (-2684.122) * (-2681.193) (-2680.484) [-2670.048] (-2687.168) -- 0:01:56 49500 -- (-2683.286) [-2666.981] (-2683.409) (-2693.565) * (-2677.220) (-2683.841) [-2666.538] (-2682.983) -- 0:01:55 50000 -- (-2678.555) [-2666.699] (-2681.056) (-2683.702) * (-2679.541) (-2684.857) [-2665.440] (-2681.573) -- 0:01:54 Average standard deviation of split frequencies: 0.020077 50500 -- [-2684.265] (-2667.884) (-2686.285) (-2693.760) * (-2683.482) (-2680.157) [-2664.957] (-2680.676) -- 0:01:52 51000 -- [-2679.550] (-2663.942) (-2687.263) (-2686.032) * (-2680.762) [-2677.944] (-2666.765) (-2683.152) -- 0:01:51 51500 -- (-2680.573) [-2665.591] (-2686.481) (-2679.241) * (-2678.451) (-2692.296) [-2666.807] (-2680.129) -- 0:01:50 52000 -- (-2676.520) [-2669.896] (-2675.915) (-2679.052) * (-2679.871) (-2680.092) [-2666.507] (-2685.735) -- 0:01:49 52500 -- (-2681.967) [-2668.694] (-2682.967) (-2683.370) * (-2681.621) (-2679.105) [-2671.480] (-2687.072) -- 0:01:48 53000 -- (-2680.787) [-2669.034] (-2675.034) (-2677.953) * (-2685.587) (-2679.532) [-2662.684] (-2683.337) -- 0:01:47 53500 -- (-2678.586) [-2668.171] (-2678.858) (-2684.736) * (-2693.456) (-2683.738) [-2667.180] (-2682.222) -- 0:01:46 54000 -- (-2684.519) [-2675.819] (-2687.466) (-2686.743) * (-2687.729) (-2683.486) (-2670.414) [-2687.116] -- 0:01:45 54500 -- (-2684.924) (-2673.225) (-2692.973) [-2682.137] * (-2680.560) (-2676.495) [-2673.821] (-2679.573) -- 0:01:44 55000 -- (-2689.466) (-2661.526) (-2677.509) [-2681.199] * (-2690.185) (-2683.213) [-2667.956] (-2679.491) -- 0:01:43 Average standard deviation of split frequencies: 0.012627 55500 -- [-2678.662] (-2680.718) (-2684.338) (-2681.655) * (-2685.277) (-2686.372) [-2666.679] (-2679.462) -- 0:01:59 56000 -- (-2682.926) (-2671.878) [-2677.665] (-2680.178) * (-2686.288) (-2691.009) [-2663.698] (-2678.359) -- 0:01:58 56500 -- (-2681.296) [-2671.015] (-2682.250) (-2678.592) * (-2684.078) (-2679.677) [-2662.817] (-2678.052) -- 0:01:56 57000 -- (-2677.921) [-2665.275] (-2684.593) (-2684.742) * (-2681.390) (-2683.014) [-2663.129] (-2680.309) -- 0:01:55 57500 -- (-2684.183) [-2670.730] (-2688.154) (-2683.370) * (-2678.535) (-2677.699) [-2664.103] (-2687.414) -- 0:01:54 58000 -- (-2683.583) [-2665.564] (-2691.166) (-2680.048) * (-2684.547) (-2678.184) [-2673.661] (-2689.929) -- 0:01:53 58500 -- (-2692.499) [-2666.297] (-2684.390) (-2677.588) * (-2680.615) [-2681.653] (-2687.808) (-2687.076) -- 0:01:52 59000 -- (-2684.504) [-2665.052] (-2682.635) (-2682.424) * [-2681.702] (-2681.111) (-2674.751) (-2684.002) -- 0:01:51 59500 -- (-2680.364) (-2672.926) (-2679.627) [-2680.422] * [-2683.285] (-2681.653) (-2686.323) (-2683.558) -- 0:01:50 60000 -- (-2683.908) [-2666.830] (-2682.406) (-2680.328) * [-2677.591] (-2682.527) (-2690.526) (-2678.500) -- 0:01:49 Average standard deviation of split frequencies: 0.017995 60500 -- (-2681.244) [-2667.815] (-2681.469) (-2677.387) * (-2683.742) [-2673.912] (-2694.915) (-2679.522) -- 0:01:48 61000 -- (-2675.962) [-2667.792] (-2687.387) (-2686.506) * (-2682.286) (-2678.556) (-2679.119) [-2677.684] -- 0:01:47 61500 -- (-2680.982) [-2670.360] (-2692.024) (-2677.173) * (-2676.972) (-2678.111) (-2684.134) [-2673.408] -- 0:01:46 62000 -- [-2679.113] (-2673.603) (-2686.247) (-2680.759) * (-2686.546) (-2686.970) (-2682.651) [-2682.485] -- 0:01:45 62500 -- (-2680.669) [-2664.090] (-2684.294) (-2685.249) * (-2678.086) (-2681.780) [-2683.568] (-2684.904) -- 0:01:45 63000 -- (-2685.616) [-2666.518] (-2674.544) (-2683.759) * [-2677.425] (-2681.942) (-2695.865) (-2697.948) -- 0:01:44 63500 -- (-2691.823) [-2671.868] (-2687.335) (-2677.999) * (-2684.958) (-2679.814) [-2677.503] (-2688.197) -- 0:01:43 64000 -- (-2685.799) [-2663.577] (-2694.828) (-2677.698) * (-2678.854) [-2677.670] (-2679.695) (-2684.176) -- 0:01:57 64500 -- (-2681.879) [-2665.009] (-2687.592) (-2679.164) * [-2680.392] (-2684.213) (-2688.632) (-2682.947) -- 0:01:56 65000 -- (-2685.588) [-2661.076] (-2681.077) (-2683.300) * (-2686.599) (-2682.427) (-2683.989) [-2680.315] -- 0:01:55 Average standard deviation of split frequencies: 0.013571 65500 -- [-2682.127] (-2668.637) (-2689.855) (-2689.342) * (-2679.438) (-2680.817) [-2679.667] (-2680.339) -- 0:01:54 66000 -- (-2684.321) [-2663.955] (-2679.358) (-2674.866) * (-2680.277) [-2680.268] (-2679.258) (-2684.764) -- 0:01:53 66500 -- (-2683.655) [-2665.432] (-2678.246) (-2680.831) * [-2679.172] (-2691.800) (-2693.013) (-2682.843) -- 0:01:52 67000 -- (-2686.634) [-2670.264] (-2686.807) (-2675.695) * (-2686.067) (-2695.569) (-2687.313) [-2682.864] -- 0:01:51 67500 -- (-2686.156) [-2669.793] (-2684.527) (-2686.074) * (-2677.375) [-2682.897] (-2678.700) (-2680.340) -- 0:01:50 68000 -- (-2678.928) [-2667.942] (-2686.044) (-2682.837) * [-2675.131] (-2680.202) (-2679.694) (-2681.348) -- 0:01:49 68500 -- (-2686.273) [-2667.082] (-2694.445) (-2686.817) * (-2694.096) (-2683.555) [-2679.410] (-2676.437) -- 0:01:48 69000 -- (-2686.976) (-2665.152) [-2694.187] (-2691.302) * [-2677.644] (-2682.628) (-2682.408) (-2689.663) -- 0:01:47 69500 -- (-2682.340) [-2663.903] (-2687.895) (-2678.495) * (-2686.909) [-2679.133] (-2690.330) (-2690.681) -- 0:01:47 70000 -- (-2681.123) [-2666.349] (-2683.004) (-2685.409) * [-2683.613] (-2679.089) (-2684.147) (-2684.658) -- 0:01:46 Average standard deviation of split frequencies: 0.017344 70500 -- (-2684.679) [-2666.073] (-2682.651) (-2681.465) * (-2686.856) (-2679.373) (-2690.896) [-2687.808] -- 0:01:45 71000 -- (-2684.074) [-2666.969] (-2690.456) (-2678.797) * (-2681.744) (-2685.124) (-2677.115) [-2684.461] -- 0:01:44 71500 -- [-2684.363] (-2669.208) (-2700.593) (-2686.303) * (-2682.156) [-2676.729] (-2677.145) (-2686.388) -- 0:01:43 72000 -- (-2683.515) [-2666.955] (-2682.167) (-2688.654) * (-2676.693) [-2671.540] (-2681.138) (-2684.557) -- 0:01:43 72500 -- (-2685.193) [-2665.312] (-2676.130) (-2684.451) * [-2679.513] (-2683.426) (-2680.022) (-2687.524) -- 0:01:42 73000 -- (-2678.378) [-2668.594] (-2683.549) (-2684.666) * [-2678.427] (-2687.812) (-2685.828) (-2688.819) -- 0:01:54 73500 -- (-2683.555) [-2671.497] (-2677.971) (-2684.041) * [-2675.948] (-2687.588) (-2680.222) (-2683.316) -- 0:01:53 74000 -- (-2682.970) [-2664.413] (-2683.846) (-2681.319) * (-2681.528) [-2681.573] (-2681.413) (-2684.892) -- 0:01:52 74500 -- (-2680.653) [-2664.479] (-2683.181) (-2694.357) * (-2674.301) (-2680.972) [-2678.561] (-2679.225) -- 0:01:51 75000 -- (-2675.271) [-2669.406] (-2675.220) (-2686.216) * [-2681.317] (-2684.177) (-2680.504) (-2678.892) -- 0:01:51 Average standard deviation of split frequencies: 0.017988 75500 -- (-2692.094) [-2666.415] (-2684.386) (-2675.668) * [-2689.061] (-2688.234) (-2677.558) (-2679.863) -- 0:01:50 76000 -- (-2681.612) [-2663.826] (-2680.352) (-2684.839) * (-2688.028) (-2680.624) [-2679.056] (-2676.253) -- 0:01:49 76500 -- (-2684.521) [-2667.132] (-2681.138) (-2690.179) * [-2674.904] (-2685.611) (-2684.104) (-2688.376) -- 0:01:48 77000 -- (-2688.088) [-2660.677] (-2680.721) (-2685.076) * (-2693.548) (-2675.652) (-2684.408) [-2683.216] -- 0:01:47 77500 -- (-2685.364) [-2667.564] (-2684.211) (-2683.350) * (-2678.165) (-2679.297) [-2674.094] (-2684.199) -- 0:01:47 78000 -- (-2684.605) (-2667.001) (-2677.297) [-2682.198] * (-2682.691) [-2677.140] (-2681.866) (-2687.267) -- 0:01:46 78500 -- (-2691.620) [-2665.615] (-2679.601) (-2682.881) * (-2685.452) (-2682.253) [-2681.281] (-2680.241) -- 0:01:45 79000 -- (-2686.119) [-2667.178] (-2677.487) (-2688.665) * (-2682.155) (-2678.271) (-2686.734) [-2679.283] -- 0:01:44 79500 -- (-2684.189) [-2669.910] (-2683.672) (-2685.083) * (-2681.611) (-2696.527) [-2679.956] (-2690.191) -- 0:01:44 80000 -- (-2688.162) [-2664.990] (-2683.228) (-2686.191) * (-2681.436) [-2681.409] (-2681.961) (-2686.177) -- 0:01:43 Average standard deviation of split frequencies: 0.020161 80500 -- [-2680.028] (-2666.405) (-2686.535) (-2680.024) * [-2685.652] (-2688.282) (-2680.215) (-2675.192) -- 0:01:42 81000 -- (-2679.568) [-2666.140] (-2691.473) (-2683.031) * (-2684.647) [-2681.481] (-2685.034) (-2683.985) -- 0:01:42 81500 -- (-2677.933) [-2666.781] (-2683.983) (-2685.193) * (-2678.867) [-2682.364] (-2685.595) (-2685.088) -- 0:01:52 82000 -- (-2681.439) [-2666.745] (-2683.322) (-2681.629) * [-2679.770] (-2684.620) (-2684.066) (-2680.640) -- 0:01:51 82500 -- (-2682.323) [-2664.017] (-2681.947) (-2682.683) * (-2676.744) (-2681.098) [-2677.240] (-2687.401) -- 0:01:51 83000 -- (-2681.022) [-2667.695] (-2680.100) (-2682.872) * (-2677.670) (-2692.226) [-2681.717] (-2681.237) -- 0:01:50 83500 -- [-2681.447] (-2672.799) (-2685.754) (-2698.795) * (-2678.314) (-2691.202) [-2676.045] (-2686.057) -- 0:01:49 84000 -- [-2680.955] (-2664.986) (-2684.802) (-2688.035) * [-2686.922] (-2689.897) (-2689.138) (-2686.554) -- 0:01:49 84500 -- (-2683.589) (-2668.336) [-2673.726] (-2684.311) * (-2681.722) (-2684.193) (-2686.294) [-2680.857] -- 0:01:48 85000 -- (-2680.581) [-2666.121] (-2681.581) (-2690.423) * (-2682.545) (-2681.289) (-2684.723) [-2677.984] -- 0:01:47 Average standard deviation of split frequencies: 0.019838 85500 -- (-2683.529) [-2673.128] (-2678.818) (-2679.698) * (-2684.109) (-2690.395) (-2679.960) [-2677.487] -- 0:01:46 86000 -- (-2677.624) (-2686.772) (-2676.805) [-2687.012] * (-2681.944) [-2684.213] (-2684.473) (-2688.595) -- 0:01:46 86500 -- (-2675.624) [-2672.321] (-2680.898) (-2684.470) * (-2677.490) (-2685.867) (-2683.207) [-2687.410] -- 0:01:45 87000 -- [-2682.984] (-2691.764) (-2681.993) (-2685.058) * [-2679.686] (-2692.282) (-2680.310) (-2688.448) -- 0:01:44 87500 -- (-2688.766) [-2683.119] (-2682.133) (-2687.671) * [-2676.155] (-2686.653) (-2690.309) (-2682.199) -- 0:01:44 88000 -- (-2687.802) [-2677.381] (-2687.016) (-2685.272) * (-2680.987) [-2681.805] (-2687.371) (-2684.395) -- 0:01:43 88500 -- (-2685.214) [-2683.441] (-2689.860) (-2679.223) * (-2683.325) (-2686.102) (-2680.488) [-2683.769] -- 0:01:42 89000 -- (-2694.633) (-2687.986) [-2680.683] (-2685.914) * [-2681.266] (-2685.167) (-2682.242) (-2690.224) -- 0:01:42 89500 -- [-2677.227] (-2682.832) (-2686.701) (-2683.360) * (-2686.352) (-2695.885) (-2682.020) [-2677.843] -- 0:01:41 90000 -- (-2681.029) [-2680.714] (-2689.005) (-2682.977) * (-2682.750) [-2675.655] (-2682.210) (-2683.484) -- 0:01:41 Average standard deviation of split frequencies: 0.019497 90500 -- (-2678.488) (-2682.382) (-2689.361) [-2681.867] * [-2676.946] (-2684.351) (-2678.567) (-2692.760) -- 0:01:50 91000 -- (-2682.394) [-2681.957] (-2676.986) (-2694.416) * (-2677.881) (-2689.889) (-2683.404) [-2688.612] -- 0:01:49 91500 -- [-2675.900] (-2681.211) (-2685.601) (-2684.640) * [-2677.896] (-2678.947) (-2685.215) (-2690.821) -- 0:01:49 92000 -- (-2690.765) [-2680.972] (-2684.407) (-2680.999) * [-2676.776] (-2683.393) (-2686.337) (-2686.267) -- 0:01:48 92500 -- (-2683.912) [-2682.092] (-2683.031) (-2691.341) * (-2680.240) (-2683.874) [-2681.831] (-2683.486) -- 0:01:47 93000 -- (-2685.164) (-2684.167) [-2677.561] (-2686.183) * (-2680.212) (-2680.426) (-2685.394) [-2683.680] -- 0:01:47 93500 -- (-2679.219) [-2674.270] (-2681.786) (-2691.696) * (-2678.988) (-2689.617) (-2684.227) [-2680.685] -- 0:01:46 94000 -- (-2677.986) (-2681.031) (-2680.002) [-2686.464] * (-2690.004) (-2680.769) [-2677.315] (-2680.312) -- 0:01:46 94500 -- (-2680.552) (-2678.249) [-2689.495] (-2692.943) * (-2678.516) (-2695.214) (-2684.489) [-2686.715] -- 0:01:45 95000 -- (-2683.425) [-2677.272] (-2681.391) (-2682.898) * (-2681.343) (-2686.074) (-2677.021) [-2680.507] -- 0:01:44 Average standard deviation of split frequencies: 0.013956 95500 -- [-2681.597] (-2680.552) (-2679.632) (-2689.582) * (-2684.483) (-2684.289) [-2689.418] (-2677.310) -- 0:01:44 96000 -- [-2678.127] (-2679.686) (-2679.704) (-2690.558) * [-2681.806] (-2685.183) (-2683.741) (-2685.550) -- 0:01:43 96500 -- (-2684.755) (-2681.939) (-2675.541) [-2680.657] * (-2683.487) (-2681.415) (-2688.266) [-2681.340] -- 0:01:42 97000 -- (-2681.116) [-2686.061] (-2681.390) (-2681.838) * (-2677.188) [-2682.559] (-2685.291) (-2681.980) -- 0:01:42 97500 -- [-2678.070] (-2684.526) (-2697.318) (-2686.057) * (-2686.492) (-2680.254) [-2676.783] (-2676.745) -- 0:01:41 98000 -- (-2680.631) (-2685.541) (-2682.193) [-2682.864] * (-2681.583) (-2683.055) [-2681.002] (-2677.261) -- 0:01:41 98500 -- [-2681.172] (-2682.069) (-2685.818) (-2689.107) * (-2681.513) (-2681.238) (-2684.643) [-2673.307] -- 0:01:40 99000 -- (-2684.073) (-2687.890) [-2676.332] (-2694.064) * [-2677.906] (-2680.458) (-2679.572) (-2676.757) -- 0:01:40 99500 -- (-2685.670) (-2685.026) (-2684.258) [-2687.620] * (-2678.578) (-2678.068) (-2681.102) [-2683.627] -- 0:01:39 100000 -- (-2688.633) (-2688.163) (-2690.933) [-2685.026] * (-2685.240) [-2678.937] (-2682.078) (-2683.289) -- 0:01:48 Average standard deviation of split frequencies: 0.014985 100500 -- (-2683.464) (-2680.887) (-2684.569) [-2676.713] * (-2679.453) (-2681.798) [-2675.301] (-2688.049) -- 0:01:47 101000 -- [-2689.431] (-2681.511) (-2683.965) (-2684.041) * (-2680.152) (-2682.688) (-2683.448) [-2686.362] -- 0:01:46 101500 -- [-2681.344] (-2683.330) (-2682.007) (-2683.620) * (-2682.765) (-2678.391) (-2689.359) [-2685.818] -- 0:01:46 102000 -- (-2682.592) (-2688.148) [-2685.552] (-2678.645) * (-2686.226) (-2682.870) (-2682.209) [-2679.107] -- 0:01:45 102500 -- (-2689.128) [-2678.094] (-2689.804) (-2681.095) * (-2677.667) (-2677.562) (-2684.726) [-2676.594] -- 0:01:45 103000 -- (-2684.183) (-2681.136) (-2678.588) [-2687.306] * (-2690.362) (-2681.600) [-2685.598] (-2678.774) -- 0:01:44 103500 -- (-2683.480) (-2680.472) [-2684.199] (-2684.055) * (-2685.992) (-2683.813) [-2682.373] (-2682.317) -- 0:01:43 104000 -- [-2679.693] (-2679.134) (-2682.237) (-2680.115) * (-2688.829) [-2677.469] (-2680.651) (-2679.326) -- 0:01:43 104500 -- [-2683.126] (-2676.468) (-2685.897) (-2680.510) * (-2684.528) (-2681.254) (-2685.428) [-2682.414] -- 0:01:42 105000 -- (-2681.682) (-2681.606) (-2687.974) [-2682.947] * (-2680.262) (-2685.033) (-2683.156) [-2681.581] -- 0:01:42 Average standard deviation of split frequencies: 0.014231 105500 -- [-2686.161] (-2679.554) (-2689.040) (-2676.401) * [-2677.541] (-2681.055) (-2685.925) (-2686.995) -- 0:01:41 106000 -- (-2684.123) (-2679.845) [-2680.159] (-2684.295) * [-2679.539] (-2679.781) (-2689.534) (-2679.758) -- 0:01:41 106500 -- (-2678.948) [-2678.068] (-2684.141) (-2685.155) * (-2686.299) [-2680.426] (-2685.988) (-2684.165) -- 0:01:40 107000 -- (-2682.708) (-2682.827) (-2680.160) [-2679.969] * [-2684.552] (-2686.294) (-2685.974) (-2677.998) -- 0:01:40 107500 -- (-2683.471) [-2684.910] (-2682.997) (-2677.429) * (-2689.500) (-2682.420) [-2683.109] (-2682.465) -- 0:01:39 108000 -- (-2683.147) (-2676.537) (-2682.769) [-2675.947] * (-2686.086) (-2681.086) (-2677.266) [-2680.224] -- 0:01:39 108500 -- (-2687.461) (-2682.338) (-2684.130) [-2676.906] * [-2680.077] (-2689.985) (-2679.541) (-2690.020) -- 0:01:38 109000 -- (-2685.237) (-2679.985) (-2683.311) [-2676.202] * (-2685.815) (-2683.791) [-2681.194] (-2680.124) -- 0:01:46 109500 -- [-2681.093] (-2677.972) (-2679.461) (-2683.625) * (-2679.421) (-2679.527) (-2678.428) [-2682.253] -- 0:01:45 110000 -- (-2680.742) [-2681.998] (-2684.015) (-2694.615) * (-2683.529) (-2676.545) [-2686.057] (-2684.349) -- 0:01:45 Average standard deviation of split frequencies: 0.012992 110500 -- (-2686.208) [-2676.871] (-2680.365) (-2688.187) * (-2676.297) [-2681.027] (-2681.325) (-2685.637) -- 0:01:44 111000 -- [-2676.924] (-2677.651) (-2689.266) (-2689.736) * [-2680.809] (-2686.472) (-2678.067) (-2675.970) -- 0:01:44 111500 -- (-2683.626) [-2677.256] (-2686.064) (-2688.184) * (-2677.376) [-2680.241] (-2680.752) (-2681.502) -- 0:01:43 112000 -- (-2683.601) (-2676.474) (-2682.724) [-2676.976] * [-2681.662] (-2682.467) (-2688.989) (-2681.354) -- 0:01:43 112500 -- (-2679.985) (-2684.185) [-2682.032] (-2685.184) * [-2676.686] (-2683.010) (-2684.409) (-2682.148) -- 0:01:42 113000 -- (-2691.657) (-2684.539) (-2686.535) [-2684.162] * (-2679.473) (-2688.250) (-2681.466) [-2680.572] -- 0:01:42 113500 -- (-2685.584) (-2682.840) [-2675.291] (-2685.912) * (-2680.821) (-2685.761) (-2679.691) [-2681.642] -- 0:01:41 114000 -- (-2685.923) [-2679.687] (-2675.146) (-2684.631) * (-2687.288) (-2682.194) [-2681.178] (-2685.597) -- 0:01:41 114500 -- (-2690.570) (-2680.898) [-2682.322] (-2681.071) * [-2677.036] (-2688.977) (-2687.004) (-2685.076) -- 0:01:40 115000 -- [-2678.847] (-2686.636) (-2683.597) (-2679.875) * [-2677.684] (-2684.646) (-2684.921) (-2692.985) -- 0:01:40 Average standard deviation of split frequencies: 0.013004 115500 -- (-2682.188) [-2685.214] (-2689.397) (-2679.063) * (-2683.732) [-2687.428] (-2682.230) (-2689.842) -- 0:01:39 116000 -- [-2676.507] (-2687.007) (-2690.569) (-2678.472) * [-2680.647] (-2687.241) (-2679.279) (-2685.372) -- 0:01:39 116500 -- [-2679.601] (-2678.234) (-2685.553) (-2680.763) * (-2690.582) [-2685.095] (-2685.044) (-2680.907) -- 0:01:38 117000 -- (-2679.352) (-2676.010) [-2679.831] (-2687.568) * (-2691.225) (-2683.733) (-2684.310) [-2680.858] -- 0:01:38 117500 -- [-2679.293] (-2682.561) (-2691.015) (-2691.127) * [-2682.131] (-2687.505) (-2681.149) (-2680.775) -- 0:01:37 118000 -- [-2673.129] (-2690.478) (-2686.401) (-2683.043) * (-2688.941) [-2676.690] (-2683.932) (-2688.556) -- 0:01:37 118500 -- [-2677.888] (-2686.348) (-2681.969) (-2677.619) * (-2686.727) [-2674.609] (-2678.086) (-2681.260) -- 0:01:44 119000 -- [-2673.892] (-2682.246) (-2678.034) (-2682.193) * (-2682.945) (-2687.038) (-2681.718) [-2677.561] -- 0:01:43 119500 -- [-2681.388] (-2682.547) (-2686.783) (-2689.793) * (-2678.507) (-2681.113) (-2682.179) [-2680.772] -- 0:01:43 120000 -- (-2681.013) (-2686.879) (-2679.001) [-2677.590] * [-2681.676] (-2684.709) (-2682.656) (-2684.064) -- 0:01:42 Average standard deviation of split frequencies: 0.014804 120500 -- [-2676.956] (-2676.589) (-2682.024) (-2684.601) * (-2678.170) (-2683.143) [-2681.426] (-2678.599) -- 0:01:42 121000 -- (-2693.432) [-2673.754] (-2678.911) (-2680.595) * (-2683.693) [-2681.462] (-2684.520) (-2688.880) -- 0:01:41 121500 -- (-2684.327) (-2687.979) [-2676.751] (-2682.551) * [-2681.610] (-2682.033) (-2676.867) (-2685.793) -- 0:01:41 122000 -- (-2680.349) (-2678.342) [-2679.906] (-2683.112) * [-2675.229] (-2684.734) (-2684.259) (-2675.699) -- 0:01:40 122500 -- [-2681.782] (-2686.312) (-2683.633) (-2679.497) * [-2675.651] (-2684.195) (-2685.130) (-2681.017) -- 0:01:40 123000 -- [-2676.428] (-2680.925) (-2682.653) (-2681.653) * (-2682.062) (-2679.620) (-2682.330) [-2685.135] -- 0:01:39 123500 -- (-2681.330) [-2680.332] (-2684.613) (-2681.032) * [-2678.208] (-2680.704) (-2682.667) (-2681.552) -- 0:01:39 124000 -- (-2681.682) (-2685.675) [-2677.006] (-2682.226) * (-2683.042) (-2686.713) (-2684.763) [-2678.728] -- 0:01:38 124500 -- (-2686.900) (-2692.838) [-2681.431] (-2678.705) * (-2685.930) (-2683.589) [-2679.440] (-2681.718) -- 0:01:38 125000 -- (-2682.373) (-2691.154) [-2680.924] (-2682.895) * [-2677.250] (-2680.912) (-2684.820) (-2677.940) -- 0:01:38 Average standard deviation of split frequencies: 0.015359 125500 -- (-2678.116) (-2684.682) [-2684.384] (-2686.276) * (-2680.736) (-2681.126) [-2682.523] (-2682.680) -- 0:01:37 126000 -- [-2675.026] (-2680.644) (-2678.068) (-2682.631) * [-2678.250] (-2681.406) (-2678.340) (-2685.375) -- 0:01:44 126500 -- (-2680.335) (-2684.955) (-2686.825) [-2683.204] * (-2679.582) (-2689.360) [-2678.667] (-2686.342) -- 0:01:43 127000 -- [-2680.102] (-2681.971) (-2687.386) (-2685.597) * (-2678.792) [-2680.174] (-2681.862) (-2685.232) -- 0:01:43 127500 -- [-2686.458] (-2678.917) (-2677.242) (-2677.811) * [-2686.014] (-268