--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Thu Jan 23 15:12:23 GMT 2020
codeml.models=0 1 2 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=MUSCLE
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=/usr/bin/
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb
tcoffee.bin=t_coffee
mrbayes.dir=/opt/mrbayes_3.2.2/src
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/data/3res/lysS/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/data/3res/lysS/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/data/3res/lysS/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /data/3res/lysS/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -4552.72         -4556.06
2      -4552.68         -4555.49
--------------------------------------
TOTAL    -4552.70         -4555.81
--------------------------------------


Model parameter summaries over the runs sampled in files
"/data/3res/lysS/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/data/3res/lysS/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/data/3res/lysS/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.902286    0.089738    0.365061    1.485198    0.872612   1501.00   1501.00    1.000
r(A<->C){all}   0.164106    0.019285    0.000125    0.453227    0.128927    243.99    245.66    1.000
r(A<->G){all}   0.166891    0.020619    0.000028    0.467502    0.128610    252.52    254.53    1.003
r(A<->T){all}   0.147016    0.014453    0.000078    0.389026    0.116609    305.43    361.77    1.007
r(C<->G){all}   0.172438    0.023718    0.000283    0.485449    0.129938    200.08    253.27    1.000
r(C<->T){all}   0.165632    0.020748    0.000112    0.463266    0.125970    148.22    199.85    1.000
r(G<->T){all}   0.183917    0.020798    0.000027    0.466557    0.150393    179.65    234.98    1.003
pi(A){all}      0.199055    0.000049    0.185605    0.213206    0.198933   1282.49   1289.15    1.000
pi(C){all}      0.290260    0.000065    0.274651    0.305911    0.290146   1040.81   1243.14    1.000
pi(G){all}      0.301431    0.000063    0.286179    0.317178    0.301650   1218.83   1242.03    1.000
pi(T){all}      0.209254    0.000049    0.195122    0.222669    0.209302   1231.29   1366.14    1.000
alpha{1,2}      0.438555    0.236943    0.000263    1.472607    0.271907    997.37   1249.19    1.001
alpha{3}        0.462602    0.222718    0.000114    1.401284    0.306386   1106.49   1196.00    1.000
pinvar{all}     0.999592    0.000000    0.998686    1.000000    0.999751    641.78    772.55    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-4149.739325
Model 2: PositiveSelection	-4149.739325
Model 0: one-ratio	-4149.739326
Model 7: beta	-4149.739325
Model 8: beta&w>1	-4149.739325


Model 0 vs 1	2.0000006770715117E-6

Model 2 vs 1	0.0

Model 8 vs 7	0.0
>C1
ICSGPCSGSRSHSRYHWVPAAAGWTVGVIATLSLIASVSPLIRWLIRVPR
EFINNYLFNFPDTSIAWSFVLALLAAALTTRKRIAWLLLLGNMVLAAVLN
AVDMAANGNTPAETFGENLGFAVHVVAILLLVLSYREFWAKVRRGALFKA
AAVLVAGDVIGILLSLGLVELFPGSLARQDRLPYVANRVVGFALADPDLF
SGKPHVLLNAIFGLFGALALIMATIVLFQSQRADNALTGEDESAIRGLLE
LYGKNDSLGYFATRRDKSVIFAHNGRAAITYRVEIGVCLASGDPVGDPGA
WPQAVDAWLELCQTYGWAPGVMGASSQGAQVFRRAGFNAIELGDEAILRT
AVYKLSGPDMRGVRQAVTRARRAGLTVRIRRHSDISANEMADTIARADAW
RDTEFERGFSMALGRLGDPADSDCLLVEAVDRDDHVVAILSLVPWGTTGV
SLDVMRRSPQSPNGTIELMVSELALKGETLGIARISLNFTMFRAAFEQGA
QLGAGPIARLWRGLLLFFSRWWQLETLYRSNIKYLPDWVPRYACYEDARL
IPRVGVASVIAEGFLVLPFSRRGRVHTGHHPAVPARLAESGLLHHDGSTP
DVSGLQTADVDLEVANSRIPEQVRVRLAKLKTLQLNGIDAYPVGHPPSHT
VAQALDADDEGTVSISGRILRIRDYGGVLFAHVRDWSGEIQVLLDNLVLE
CCCIADFTAAIDLGDIVEMTGNMGFSKNGTRSLIVRNWRLIGKCLRPLPN
KWKGLTDPEARVRTRYVDLAVNTESRNLIMARSCVLRSVREMLFAKGFVE
VETPILQQIHGGATARPFATRINTYDMDLFLRIAPELYLKRLCIGGVERV
FELGRAFRNEGVDFSHNPEFTLLEAYQAHADYLMWIDGCRELIQNAAEAA
NGTQTLMRPRIEGASGTANHLEPIDISGVWPVKTVYEAVSEALGECVDTS
TELATLRKLSDAAHIPYWPHWDTGAVVLKLYEHLVENRTDQPTFYIDFPT
SVSPLTRPHRSKPGVAERWDLVAWGIELGTAYSELTDPVEQRRRLHEQSL
LAVGGNPEAMELDEDFLQAMEYAMPPTGGLGMGIDRLVMLITGRSIRETL
PFPLAKPH
>C2
VLALLAAALTTRKRIAWLLLLGNMVLAAVLNAVDMAANGNTPAETFGENL
GFAVHVVAILLLVLSYREFWAKVRRGALFKAAAVLVAGDVIGILLSLGLV
ELFPGSLARQDRLPYVANRVVGFALADPDLFSGKPHVLLNAIFGLFGALA
LIMATIVLFQSQRADNALTGEDESAIRGLLELYGKNDSLGYFATRRDKSV
IFAHNGRAAITYRVEIGVCLASGDPVGDPGAWPQAVDAWLELCQTYGWAP
GVMGASSQGAQVFRRAGFNAIELGDEAILRTAVYKLSGPDMRGVRQAVTR
ARRAGLTVRIRRHSDISANEMADTIARADAWRDTEFERGFSMALGRLGDP
ADSDCLLVEAVDRDDHVVAILSLVPWGTTGVSLDVMRRSPQSPNGTIELM
VSELALKGETLGIARISLNFTMFRAAFEQGAQLGAGPIARLWRGLLLFFS
RWWQLETLYRSNIKYLPDWVPRYACYEDARLIPRVGVASVIAEGFLVLPF
SRRGRVHTGHHPAVPARLAESGLLHHDGSTPDVSGLQTADVDLEVANSRI
PEQVRVRLAKLKTLQLNGIDAYPVGHPPSHTVAQALDADDEGTVSISGRI
LRIRDYGGVLFAHVRDWSGEIQVLLDNLVLECCCIADFTAAIDLGDIVEM
TGNMGFSKNGTRSLIVRNWRLIGKCLRPLPNKWKGLTDPEARVRTRYVDL
AVNTESRNLIMARSCVLRSVREMLFAKGFVEVETPILQQIHGGATARPFA
TRINTYDMDLFLRIAPELYLKRLCIGGVERVFELGRAFRNEGVDFSHNPE
FTLLEAYQAHADYLMWIDGCRELIQNAAEAANGTQTLMRPRIEGASGTAN
HLEPIDISGVWPVKTVYEAVSEALGECVDTSTELATLRKLSDAAHIPYWP
HWDTGAVVLKLYEHLVENRTDQPTFYIDFPTSVSPLTRPHRSKPGVAERW
DLVAWGIELGTAYSELTDPVEQRRRLHEQSLLAVGGNPEAMELDEDFLQA
MEYAMPPTGGLGMGIDRLVMLITGRSIRETLPFPLAKPHooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooo
>C3
ICSGPCSGSRSHSRYHWVPAAAGWTVGVIATLSLIASVSPLIRWLIRVPR
EFINNYLFNFPDTSIAWSFVLALLAAALTTRKRIAWLLLLGNMVLAAVLN
AVDMAANGNTPAETFGENLGFAVHVVAILLLVLSYREFWAKVRRGALFKA
AAVLVAGDVIGILLSLGLVELFPGSLARQDRLPYVANRVVGFALADPDLF
SGKPHVLLNAIFGLFGALALIMATIVLFQSQRADNALTGEDESAIRGLLE
LYGKNDSLGYFATRRDKSVIFAHNGRAAITYRVEIGVCLASGDPVGDPGA
WPQAVDAWLELCQTYGWAPGVMGASSQGAQVFRRAGFNAIELGDEAILRT
AVYKLSGPDMRGVRQAVTRARRAGLTVRIRRHSDISANEMADTIARADAW
RDTEFERGFSMALGRLGDPADSDCLLVEAVDRDDHVVAILSLVPWGTTGV
SLDVMRRSPQSPNGTIELMVSELALKGETLGIARISLNFTMFRAAFEQGA
QLGAGPIARLWRGLLLFFSRWWQLETLYRSNIKYLPDWVPRYACYEDARL
IPRVGVASVIAEGFLVLPFSRRGRVHTGHHPAVPARLAESGLLHHDGSTP
DVSGLQTADVDLEVANSRIPEQVRVRLAKLKTLQLNGIDAYPVGHPPSHT
VAQALDADDEGTVSISGRILRIRDYGGVLFAHVRDWSGEIQVLLDNLVLE
CCCIADFTAAIDLGDIVEMTGNMGFSKNGTRSLIVRNWRLIGKCLRPLPN
KWKGLTDPEARVRTRYVDLAVNTESRNLIMARSCVLRSVREMLFAKGFVE
VETPILQQIHGGATARPFATRINTYDMDLFLRIAPELYLKRLCIGGVERV
FELGRAFRNEGVDFSHNPEFTLLEAYQAHADYLMWIDGCRELIQNAAEAA
NGTQTLMRPRIEGASGTANHLEPIDISGVWPVKTVYEAVSEALGECVDTS
TELATLRKLSDAAHIPYWPHWDTGAVVLKLYEHLVENRTDQPTFYIDFPT
SVSPLTRPHRSKPGVAERWDLVAWGIELGTAYSELTDPVEQRRRLHEQSL
LAVGGNPEAMELDEDFLQAMEYAMPPTGGLGMGIDRLVMLITGRSIRETL
PFPLAKPH
>C4
ICSGPCSGSRSHSRYHWVPAAAGWTVGVIATLSLIASVSPLIRWLIRVPR
EFINNYLFNFPDTSIAWSFVLALLAAALTTRKRIAWLLLLGNMVLAAVLN
AVDMAANGNTPAETFGENLGFAVHVVAILLLVLSYREFWAKVRRGALFKA
AAVLVAGDVIGILLSLGLVELFPGSLARQDRLPYVANRVVGFALADPDLF
SGKPHVLLNAIFGLFGALALIMATIVLFQSQRADNALTGEDESAIRGLLE
LYGKNDSLGYFATRRDKSVIFAHNGRAAITYRVEIGVCLASGDPVGDPGA
WPQAVDAWLELCQTYGWAPGVMGASSQGAQVFRRAGFNAIELGDEAILRT
AVYKLSGPDMRGVRQAVTRARRAGLTVRIRRHSDISANEMADTIARADAW
RDTEFERGFSMALGRLGDPADSDCLLVEAVDRDDHVVAILSLVPWGTTGV
SLDVMRRSPQSPNGTIELMVSELALKGETLGIARISLNFTMFRAAFEQGA
QLGAGPIARLWRGLLLFFSRWWQLETLYRSNIKYLPDWVPRYACYEDARL
IPRVGVASVIAEGFLVLPFSRRGRVHTGHHPAVPARLAESGLLHHDGSTP
DVSGLQTADVDLEVANSRIPEQVRVRLAKLKTLQLNGIDAYPVGHPPSHT
VAQALDADDEGTVSISGRILRIRDYGGVLFAHVRDWSGEIQVLLDNLVLE
CCCIADFTAAIDLGDIVEMTGNMGFSKNGTRSLIVRNWRLIGKCLRPLPN
KWKGLTDPEARVRTRYVDLAVNTESRNLIMARSCVLRSVREMLFAKGFVE
VETPILQQIHGGATARPFATRINTYDMDLFLRIAPELYLKRLCIGGVERV
FELGRAFRNEGVDFSHNPEFTLLEAYQAHADYLMWIDGCRELIQNAAEAA
NGTQTLMRPRIEGASGTANHLEPIDISGVWPVKTVYEAVSEALGECVDTS
TELATLRKLSDAAHIPYWPHWDTGAVVLKLYEHLVENRTDQPTFYIDFPT
SVSPLTRPHRSKPGVAERWDLVAWGIELGTAYSELTDPVEQRRRLHEQSL
LAVGGNPEAMELDEDFLQAMEYAMPPTGGLGMGIDRLVMLITGRSIRETL
PFPLAKPH
>C5
ICSGPCSGSRSHSRYHWVPAAAGWTVGVIATLSLIASVSPLIRWLIRVPR
EFINNYLFNFPDTSIAWSFVLALLAAALTTRKRIAWLLLLGNMVLAAVLN
AVDMAANGNTPAETFGENLGFAVHVVAILLLVLSYREFWAKVRRGALFKA
AAVLVAGDVIGILLSLGLVELFPGSLARQDRLPYVANRVVGFALADPDLF
SGKPHVLLNAIFGLFGALALIMATIVLFQSQRADNALTGEDESAIRGLLE
LYGKNDSLGYFATRRDKSVIFAHNGRAAITYRVEIGVCLASGDPVGDPGA
WPQAVDAWLELCQTYGWAPGVMGASSQGAQVFRRAGFNAIELGDEAILRT
AVYKLSGPDMRGVRQAVTRARRAGLTVRIRRHSDISANEMADTIARADAW
RDTEFERGFSMALGRLGDPADSDCLLVEAVDRDDHVVAILSLVPWGTTGV
SLDVMRRSPQSPNGTIELMVSELALKGETLGIARISLNFTMFRAAFEQGA
QLGAGPIARLWRGLLLFFSRWWQLETLYRSNIKYLPDWVPRYACYEDARL
IPRVGVASVIAEGFLVLPFSRRGRVHTGHHPAVPARLAESGLLHHDGSTP
DVSGLQTADVDLEVANSRIPEQVRVRLAKLKTLQLNGIDAYPVGHPPSHT
VAQALDADDEGTVSISGRILRIRDYGGVLFAHVRDWSGEIQVLLDNLVLE
CCCIADFTAAIDLGDIVEMTGNMGFSKNGTRSLIVRNWRLIGKCLRPLPN
KWKGLTDPEARVRTRYVDLAVNTESRNLIMARSCVLRSVREMLFAKGFVE
VETPILQQIHGGATARPFATRINTYDMDLFLRIAPELYLKRLCIGGVERV
FELGRAFRNEGVDFSHNPEFTLLEAYQAHADYLMWIDGCRELIQNAAEAA
NGTQTLMRPRIEGASGTANHLEPIDISGVWPVKTVYEAVSEALGECVDTS
TELATLRKLSDAAHIPYWPHWDTGAVVLKLYEHLVENRTDQPTFYIDFPT
SVSPLTRPHRSKPGVAERWDLVAWGIELGTAYSELTDPVEQRRRLHEQSL
LAVGGNPEAMELDEDFLQAMEYAMPPTGGLGMGIDRLVMLITGRSIRETL
PFPLAKPH
>C6
ICSGPCSGSRSHSRYHWVPAAAGWTVGVIATLSLIASVSPLIRWLIRVPR
EFINNYLFNFPDTSIAWSFVLALLAAALTTRKRIAWLLLLGNMVLAAVLN
AVDMAANGNTPAETFGENLGFAVHVVAILLLVLSYREFWAKVRRGALFKA
AAVLVAGDVIGILLSLGLVELFPGSLARQDRLPYVANRVVGFALADPDLF
SGKPHVLLNAIFGLFGALALIMATIVLFQSQRADNALTGEDESAIRGLLE
LYGKNDSLGYFATRRDKSVIFAHNGRAAITYRVEIGVCLASGDPVGDPGA
WPQAVDAWLELCQTYGWAPGVMGASSQGAQVFRRAGFNAIELGDEAILRT
AVYKLSGPDMRGVRQAVTRARRAGLTVRIRRHSDISANEMADTIARADAW
RDTEFERGFSMALGRLGDPADSDCLLVEAVDRDDHVVAILSLVPWGTTGV
SLDVMRRSPQSPNGTIELMVSELALKGETLGIARISLNFTMFRAAFEQGA
QLGAGPIARLWRGLLLFFSRWWQLETLYRSNIKYLPDWVPRYACYEDARL
IPRVGVASVIAEGFLVLPFSRRGRVHTGHHPAVPARLAESGLLHHDGSTP
DVSGLQTADVDLEVANSRIPEQVRVRLAKLKTLQLNGIDAYPVGHPPSHT
VAQALDADDEGTVSISGRILRIRDYGGVLFAHVRDWSGEIQVLLDNLVLE
CCCIADFTAAIDLGDIVEMTGNMGFSKNGTRSLIVRNWRLIGKCLRPLPN
KWKGLTDPEARVRTRYVDLAVNTESRNLIMARSCVLRSVREMLFAKGFVE
VETPILQQIHGGATARPFATRINTYDMDLFLRIAPELYLKRLCIGGVERV
FELGRAFRNEGVDFSHNPEFTLLEAYQAHADYLMWIDGCRELIQNAAEAA
NGTQTLMRPRIEGASGTANHLEPIDISGVWPVKTVYEAVSEALGECVDTS
TELATLRKLSDAAHIPYWPHWDTGAVVLKLYEHLVENRTDQPTFYIDFPT
SVSPLTRPHRSKPGVAERWDLVAWGIELGTAYSELTDPVEQRRRLHEQSL
LAVGGNPEAMELDEDFLQAMEYAMPPTGGLGMGIDRLVMLITGRSIRETL
PFPLAKPH
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=6, Len=1177 

C1              ICSGPCSGSRSHSRYHWVPAAAGWTVGVIATLSLIASVSPLIRWLIRVPR
C2              --------------------------------------------------
C3              ICSGPCSGSRSHSRYHWVPAAAGWTVGVIATLSLIASVSPLIRWLIRVPR
C4              ICSGPCSGSRSHSRYHWVPAAAGWTVGVIATLSLIASVSPLIRWLIRVPR
C5              ICSGPCSGSRSHSRYHWVPAAAGWTVGVIATLSLIASVSPLIRWLIRVPR
C6              ICSGPCSGSRSHSRYHWVPAAAGWTVGVIATLSLIASVSPLIRWLIRVPR
                                                                  

C1              EFINNYLFNFPDTSIAWSFVLALLAAALTTRKRIAWLLLLGNMVLAAVLN
C2              -------------------VLALLAAALTTRKRIAWLLLLGNMVLAAVLN
C3              EFINNYLFNFPDTSIAWSFVLALLAAALTTRKRIAWLLLLGNMVLAAVLN
C4              EFINNYLFNFPDTSIAWSFVLALLAAALTTRKRIAWLLLLGNMVLAAVLN
C5              EFINNYLFNFPDTSIAWSFVLALLAAALTTRKRIAWLLLLGNMVLAAVLN
C6              EFINNYLFNFPDTSIAWSFVLALLAAALTTRKRIAWLLLLGNMVLAAVLN
                                   *******************************

C1              AVDMAANGNTPAETFGENLGFAVHVVAILLLVLSYREFWAKVRRGALFKA
C2              AVDMAANGNTPAETFGENLGFAVHVVAILLLVLSYREFWAKVRRGALFKA
C3              AVDMAANGNTPAETFGENLGFAVHVVAILLLVLSYREFWAKVRRGALFKA
C4              AVDMAANGNTPAETFGENLGFAVHVVAILLLVLSYREFWAKVRRGALFKA
C5              AVDMAANGNTPAETFGENLGFAVHVVAILLLVLSYREFWAKVRRGALFKA
C6              AVDMAANGNTPAETFGENLGFAVHVVAILLLVLSYREFWAKVRRGALFKA
                **************************************************

C1              AAVLVAGDVIGILLSLGLVELFPGSLARQDRLPYVANRVVGFALADPDLF
C2              AAVLVAGDVIGILLSLGLVELFPGSLARQDRLPYVANRVVGFALADPDLF
C3              AAVLVAGDVIGILLSLGLVELFPGSLARQDRLPYVANRVVGFALADPDLF
C4              AAVLVAGDVIGILLSLGLVELFPGSLARQDRLPYVANRVVGFALADPDLF
C5              AAVLVAGDVIGILLSLGLVELFPGSLARQDRLPYVANRVVGFALADPDLF
C6              AAVLVAGDVIGILLSLGLVELFPGSLARQDRLPYVANRVVGFALADPDLF
                **************************************************

C1              SGKPHVLLNAIFGLFGALALIMATIVLFQSQRADNALTGEDESAIRGLLE
C2              SGKPHVLLNAIFGLFGALALIMATIVLFQSQRADNALTGEDESAIRGLLE
C3              SGKPHVLLNAIFGLFGALALIMATIVLFQSQRADNALTGEDESAIRGLLE
C4              SGKPHVLLNAIFGLFGALALIMATIVLFQSQRADNALTGEDESAIRGLLE
C5              SGKPHVLLNAIFGLFGALALIMATIVLFQSQRADNALTGEDESAIRGLLE
C6              SGKPHVLLNAIFGLFGALALIMATIVLFQSQRADNALTGEDESAIRGLLE
                **************************************************

C1              LYGKNDSLGYFATRRDKSVIFAHNGRAAITYRVEIGVCLASGDPVGDPGA
C2              LYGKNDSLGYFATRRDKSVIFAHNGRAAITYRVEIGVCLASGDPVGDPGA
C3              LYGKNDSLGYFATRRDKSVIFAHNGRAAITYRVEIGVCLASGDPVGDPGA
C4              LYGKNDSLGYFATRRDKSVIFAHNGRAAITYRVEIGVCLASGDPVGDPGA
C5              LYGKNDSLGYFATRRDKSVIFAHNGRAAITYRVEIGVCLASGDPVGDPGA
C6              LYGKNDSLGYFATRRDKSVIFAHNGRAAITYRVEIGVCLASGDPVGDPGA
                **************************************************

C1              WPQAVDAWLELCQTYGWAPGVMGASSQGAQVFRRAGFNAIELGDEAILRT
C2              WPQAVDAWLELCQTYGWAPGVMGASSQGAQVFRRAGFNAIELGDEAILRT
C3              WPQAVDAWLELCQTYGWAPGVMGASSQGAQVFRRAGFNAIELGDEAILRT
C4              WPQAVDAWLELCQTYGWAPGVMGASSQGAQVFRRAGFNAIELGDEAILRT
C5              WPQAVDAWLELCQTYGWAPGVMGASSQGAQVFRRAGFNAIELGDEAILRT
C6              WPQAVDAWLELCQTYGWAPGVMGASSQGAQVFRRAGFNAIELGDEAILRT
                **************************************************

C1              AVYKLSGPDMRGVRQAVTRARRAGLTVRIRRHSDISANEMADTIARADAW
C2              AVYKLSGPDMRGVRQAVTRARRAGLTVRIRRHSDISANEMADTIARADAW
C3              AVYKLSGPDMRGVRQAVTRARRAGLTVRIRRHSDISANEMADTIARADAW
C4              AVYKLSGPDMRGVRQAVTRARRAGLTVRIRRHSDISANEMADTIARADAW
C5              AVYKLSGPDMRGVRQAVTRARRAGLTVRIRRHSDISANEMADTIARADAW
C6              AVYKLSGPDMRGVRQAVTRARRAGLTVRIRRHSDISANEMADTIARADAW
                **************************************************

C1              RDTEFERGFSMALGRLGDPADSDCLLVEAVDRDDHVVAILSLVPWGTTGV
C2              RDTEFERGFSMALGRLGDPADSDCLLVEAVDRDDHVVAILSLVPWGTTGV
C3              RDTEFERGFSMALGRLGDPADSDCLLVEAVDRDDHVVAILSLVPWGTTGV
C4              RDTEFERGFSMALGRLGDPADSDCLLVEAVDRDDHVVAILSLVPWGTTGV
C5              RDTEFERGFSMALGRLGDPADSDCLLVEAVDRDDHVVAILSLVPWGTTGV
C6              RDTEFERGFSMALGRLGDPADSDCLLVEAVDRDDHVVAILSLVPWGTTGV
                **************************************************

C1              SLDVMRRSPQSPNGTIELMVSELALKGETLGIARISLNFTMFRAAFEQGA
C2              SLDVMRRSPQSPNGTIELMVSELALKGETLGIARISLNFTMFRAAFEQGA
C3              SLDVMRRSPQSPNGTIELMVSELALKGETLGIARISLNFTMFRAAFEQGA
C4              SLDVMRRSPQSPNGTIELMVSELALKGETLGIARISLNFTMFRAAFEQGA
C5              SLDVMRRSPQSPNGTIELMVSELALKGETLGIARISLNFTMFRAAFEQGA
C6              SLDVMRRSPQSPNGTIELMVSELALKGETLGIARISLNFTMFRAAFEQGA
                **************************************************

C1              QLGAGPIARLWRGLLLFFSRWWQLETLYRSNIKYLPDWVPRYACYEDARL
C2              QLGAGPIARLWRGLLLFFSRWWQLETLYRSNIKYLPDWVPRYACYEDARL
C3              QLGAGPIARLWRGLLLFFSRWWQLETLYRSNIKYLPDWVPRYACYEDARL
C4              QLGAGPIARLWRGLLLFFSRWWQLETLYRSNIKYLPDWVPRYACYEDARL
C5              QLGAGPIARLWRGLLLFFSRWWQLETLYRSNIKYLPDWVPRYACYEDARL
C6              QLGAGPIARLWRGLLLFFSRWWQLETLYRSNIKYLPDWVPRYACYEDARL
                **************************************************

C1              IPRVGVASVIAEGFLVLPFSRRGRVHTGHHPAVPARLAESGLLHHDGSTP
C2              IPRVGVASVIAEGFLVLPFSRRGRVHTGHHPAVPARLAESGLLHHDGSTP
C3              IPRVGVASVIAEGFLVLPFSRRGRVHTGHHPAVPARLAESGLLHHDGSTP
C4              IPRVGVASVIAEGFLVLPFSRRGRVHTGHHPAVPARLAESGLLHHDGSTP
C5              IPRVGVASVIAEGFLVLPFSRRGRVHTGHHPAVPARLAESGLLHHDGSTP
C6              IPRVGVASVIAEGFLVLPFSRRGRVHTGHHPAVPARLAESGLLHHDGSTP
                **************************************************

C1              DVSGLQTADVDLEVANSRIPEQVRVRLAKLKTLQLNGIDAYPVGHPPSHT
C2              DVSGLQTADVDLEVANSRIPEQVRVRLAKLKTLQLNGIDAYPVGHPPSHT
C3              DVSGLQTADVDLEVANSRIPEQVRVRLAKLKTLQLNGIDAYPVGHPPSHT
C4              DVSGLQTADVDLEVANSRIPEQVRVRLAKLKTLQLNGIDAYPVGHPPSHT
C5              DVSGLQTADVDLEVANSRIPEQVRVRLAKLKTLQLNGIDAYPVGHPPSHT
C6              DVSGLQTADVDLEVANSRIPEQVRVRLAKLKTLQLNGIDAYPVGHPPSHT
                **************************************************

C1              VAQALDADDEGTVSISGRILRIRDYGGVLFAHVRDWSGEIQVLLDNLVLE
C2              VAQALDADDEGTVSISGRILRIRDYGGVLFAHVRDWSGEIQVLLDNLVLE
C3              VAQALDADDEGTVSISGRILRIRDYGGVLFAHVRDWSGEIQVLLDNLVLE
C4              VAQALDADDEGTVSISGRILRIRDYGGVLFAHVRDWSGEIQVLLDNLVLE
C5              VAQALDADDEGTVSISGRILRIRDYGGVLFAHVRDWSGEIQVLLDNLVLE
C6              VAQALDADDEGTVSISGRILRIRDYGGVLFAHVRDWSGEIQVLLDNLVLE
                **************************************************

C1              CCCIADFTAAIDLGDIVEMTGNMGFSKNGTRSLIVRNWRLIGKCLRPLPN
C2              CCCIADFTAAIDLGDIVEMTGNMGFSKNGTRSLIVRNWRLIGKCLRPLPN
C3              CCCIADFTAAIDLGDIVEMTGNMGFSKNGTRSLIVRNWRLIGKCLRPLPN
C4              CCCIADFTAAIDLGDIVEMTGNMGFSKNGTRSLIVRNWRLIGKCLRPLPN
C5              CCCIADFTAAIDLGDIVEMTGNMGFSKNGTRSLIVRNWRLIGKCLRPLPN
C6              CCCIADFTAAIDLGDIVEMTGNMGFSKNGTRSLIVRNWRLIGKCLRPLPN
                **************************************************

C1              KWKGLTDPEARVRTRYVDLAVNTESRNLIMARSCVLRSVREMLFAKGFVE
C2              KWKGLTDPEARVRTRYVDLAVNTESRNLIMARSCVLRSVREMLFAKGFVE
C3              KWKGLTDPEARVRTRYVDLAVNTESRNLIMARSCVLRSVREMLFAKGFVE
C4              KWKGLTDPEARVRTRYVDLAVNTESRNLIMARSCVLRSVREMLFAKGFVE
C5              KWKGLTDPEARVRTRYVDLAVNTESRNLIMARSCVLRSVREMLFAKGFVE
C6              KWKGLTDPEARVRTRYVDLAVNTESRNLIMARSCVLRSVREMLFAKGFVE
                **************************************************

C1              VETPILQQIHGGATARPFATRINTYDMDLFLRIAPELYLKRLCIGGVERV
C2              VETPILQQIHGGATARPFATRINTYDMDLFLRIAPELYLKRLCIGGVERV
C3              VETPILQQIHGGATARPFATRINTYDMDLFLRIAPELYLKRLCIGGVERV
C4              VETPILQQIHGGATARPFATRINTYDMDLFLRIAPELYLKRLCIGGVERV
C5              VETPILQQIHGGATARPFATRINTYDMDLFLRIAPELYLKRLCIGGVERV
C6              VETPILQQIHGGATARPFATRINTYDMDLFLRIAPELYLKRLCIGGVERV
                **************************************************

C1              FELGRAFRNEGVDFSHNPEFTLLEAYQAHADYLMWIDGCRELIQNAAEAA
C2              FELGRAFRNEGVDFSHNPEFTLLEAYQAHADYLMWIDGCRELIQNAAEAA
C3              FELGRAFRNEGVDFSHNPEFTLLEAYQAHADYLMWIDGCRELIQNAAEAA
C4              FELGRAFRNEGVDFSHNPEFTLLEAYQAHADYLMWIDGCRELIQNAAEAA
C5              FELGRAFRNEGVDFSHNPEFTLLEAYQAHADYLMWIDGCRELIQNAAEAA
C6              FELGRAFRNEGVDFSHNPEFTLLEAYQAHADYLMWIDGCRELIQNAAEAA
                **************************************************

C1              NGTQTLMRPRIEGASGTANHLEPIDISGVWPVKTVYEAVSEALGECVDTS
C2              NGTQTLMRPRIEGASGTANHLEPIDISGVWPVKTVYEAVSEALGECVDTS
C3              NGTQTLMRPRIEGASGTANHLEPIDISGVWPVKTVYEAVSEALGECVDTS
C4              NGTQTLMRPRIEGASGTANHLEPIDISGVWPVKTVYEAVSEALGECVDTS
C5              NGTQTLMRPRIEGASGTANHLEPIDISGVWPVKTVYEAVSEALGECVDTS
C6              NGTQTLMRPRIEGASGTANHLEPIDISGVWPVKTVYEAVSEALGECVDTS
                **************************************************

C1              TELATLRKLSDAAHIPYWPHWDTGAVVLKLYEHLVENRTDQPTFYIDFPT
C2              TELATLRKLSDAAHIPYWPHWDTGAVVLKLYEHLVENRTDQPTFYIDFPT
C3              TELATLRKLSDAAHIPYWPHWDTGAVVLKLYEHLVENRTDQPTFYIDFPT
C4              TELATLRKLSDAAHIPYWPHWDTGAVVLKLYEHLVENRTDQPTFYIDFPT
C5              TELATLRKLSDAAHIPYWPHWDTGAVVLKLYEHLVENRTDQPTFYIDFPT
C6              TELATLRKLSDAAHIPYWPHWDTGAVVLKLYEHLVENRTDQPTFYIDFPT
                **************************************************

C1              SVSPLTRPHRSKPGVAERWDLVAWGIELGTAYSELTDPVEQRRRLHEQSL
C2              SVSPLTRPHRSKPGVAERWDLVAWGIELGTAYSELTDPVEQRRRLHEQSL
C3              SVSPLTRPHRSKPGVAERWDLVAWGIELGTAYSELTDPVEQRRRLHEQSL
C4              SVSPLTRPHRSKPGVAERWDLVAWGIELGTAYSELTDPVEQRRRLHEQSL
C5              SVSPLTRPHRSKPGVAERWDLVAWGIELGTAYSELTDPVEQRRRLHEQSL
C6              SVSPLTRPHRSKPGVAERWDLVAWGIELGTAYSELTDPVEQRRRLHEQSL
                **************************************************

C1              LAVGGNPEAMELDEDFLQAMEYAMPPTGGLGMGIDRLVMLITGRSIRETL
C2              LAVGGNPEAMELDEDFLQAMEYAMPPTGGLGMGIDRLVMLITGRSIRETL
C3              LAVGGNPEAMELDEDFLQAMEYAMPPTGGLGMGIDRLVMLITGRSIRETL
C4              LAVGGNPEAMELDEDFLQAMEYAMPPTGGLGMGIDRLVMLITGRSIRETL
C5              LAVGGNPEAMELDEDFLQAMEYAMPPTGGLGMGIDRLVMLITGRSIRETL
C6              LAVGGNPEAMELDEDFLQAMEYAMPPTGGLGMGIDRLVMLITGRSIRETL
                **************************************************

C1              PFPLAKPH------------------------------------------
C2              PFPLAKPHoooooooooooooooooooooooooooooooooooooooooo
C3              PFPLAKPH------------------------------------------
C4              PFPLAKPH------------------------------------------
C5              PFPLAKPH------------------------------------------
C6              PFPLAKPH------------------------------------------
                ********                                          

C1              ---------------------------
C2              ooooooooooooooooooooooooooo
C3              ---------------------------
C4              ---------------------------
C5              ---------------------------
C6              ---------------------------
                                           




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:09 - Revision 1613 - Build 432)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	input.prot.fasta.muscle_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C1 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C2 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C3 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C4 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C5 Length 1108 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.muscle_rs_0_0.fasta.aln Seq C6 Length 1108 type PROTEIN Struct Unchecked

	Multi Core Mode: 96 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [34278]

Library Relaxation: Multi_proc [96]
 
Relaxation Summary: [34278]--->[33990]



UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1


OUTPUT RESULTS
	#### File Type= MSA             Format= score_ascii     Name= input.prot.fasta.muscle_rs_0_0.fasta.score_ascii
	#### File Type= MSA             Format= html            Name= input.prot.fasta.muscle_rs_0_0.fasta.html
	#### File Type= MSA             Format= score_ascii     Name= input.prot.fasta.muscle_rs_0_0.fasta.score_ascii

# Command Line: t_coffee -infile input.prot.fasta.muscle_rs_0_0.fasta.aln -output score_ascii -special_mode evaluate -evaluate_mode t_coffee_fast  [PROGRAM:T-COFFEE]
# T-COFFEE Memory Usage: Current= 29.736 Mb, Max= 31.967 Mb
# Results Produced with T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:09 - Revision 1613 - Build 432)
# T-COFFEE is available from http://www.tcoffee.org
# Register on: https://groups.google.com/group/tcoffee/

FORMAT of file input.prot.fasta.muscle_rs_0_0.fasta.ipi_i.fasta Not Supported[FATAL:T-COFFEE]
CLUSTAL W (1.83) multiple sequence alignment

C1              VLALLAAALTTRKRIAWLLLLGNMVLAAVLNAVDMAANGNTPAETFGENL
C2              VLALLAAALTTRKRIAWLLLLGNMVLAAVLNAVDMAANGNTPAETFGENL
C3              VLALLAAALTTRKRIAWLLLLGNMVLAAVLNAVDMAANGNTPAETFGENL
C4              VLALLAAALTTRKRIAWLLLLGNMVLAAVLNAVDMAANGNTPAETFGENL
C5              VLALLAAALTTRKRIAWLLLLGNMVLAAVLNAVDMAANGNTPAETFGENL
C6              VLALLAAALTTRKRIAWLLLLGNMVLAAVLNAVDMAANGNTPAETFGENL
                **************************************************

C1              GFAVHVVAILLLVLSYREFWAKVRRGALFKAAAVLVAGDVIGILLSLGLV
C2              GFAVHVVAILLLVLSYREFWAKVRRGALFKAAAVLVAGDVIGILLSLGLV
C3              GFAVHVVAILLLVLSYREFWAKVRRGALFKAAAVLVAGDVIGILLSLGLV
C4              GFAVHVVAILLLVLSYREFWAKVRRGALFKAAAVLVAGDVIGILLSLGLV
C5              GFAVHVVAILLLVLSYREFWAKVRRGALFKAAAVLVAGDVIGILLSLGLV
C6              GFAVHVVAILLLVLSYREFWAKVRRGALFKAAAVLVAGDVIGILLSLGLV
                **************************************************

C1              ELFPGSLARQDRLPYVANRVVGFALADPDLFSGKPHVLLNAIFGLFGALA
C2              ELFPGSLARQDRLPYVANRVVGFALADPDLFSGKPHVLLNAIFGLFGALA
C3              ELFPGSLARQDRLPYVANRVVGFALADPDLFSGKPHVLLNAIFGLFGALA
C4              ELFPGSLARQDRLPYVANRVVGFALADPDLFSGKPHVLLNAIFGLFGALA
C5              ELFPGSLARQDRLPYVANRVVGFALADPDLFSGKPHVLLNAIFGLFGALA
C6              ELFPGSLARQDRLPYVANRVVGFALADPDLFSGKPHVLLNAIFGLFGALA
                **************************************************

C1              LIMATIVLFQSQRADNALTGEDESAIRGLLELYGKNDSLGYFATRRDKSV
C2              LIMATIVLFQSQRADNALTGEDESAIRGLLELYGKNDSLGYFATRRDKSV
C3              LIMATIVLFQSQRADNALTGEDESAIRGLLELYGKNDSLGYFATRRDKSV
C4              LIMATIVLFQSQRADNALTGEDESAIRGLLELYGKNDSLGYFATRRDKSV
C5              LIMATIVLFQSQRADNALTGEDESAIRGLLELYGKNDSLGYFATRRDKSV
C6              LIMATIVLFQSQRADNALTGEDESAIRGLLELYGKNDSLGYFATRRDKSV
                **************************************************

C1              IFAHNGRAAITYRVEIGVCLASGDPVGDPGAWPQAVDAWLELCQTYGWAP
C2              IFAHNGRAAITYRVEIGVCLASGDPVGDPGAWPQAVDAWLELCQTYGWAP
C3              IFAHNGRAAITYRVEIGVCLASGDPVGDPGAWPQAVDAWLELCQTYGWAP
C4              IFAHNGRAAITYRVEIGVCLASGDPVGDPGAWPQAVDAWLELCQTYGWAP
C5              IFAHNGRAAITYRVEIGVCLASGDPVGDPGAWPQAVDAWLELCQTYGWAP
C6              IFAHNGRAAITYRVEIGVCLASGDPVGDPGAWPQAVDAWLELCQTYGWAP
                **************************************************

C1              GVMGASSQGAQVFRRAGFNAIELGDEAILRTAVYKLSGPDMRGVRQAVTR
C2              GVMGASSQGAQVFRRAGFNAIELGDEAILRTAVYKLSGPDMRGVRQAVTR
C3              GVMGASSQGAQVFRRAGFNAIELGDEAILRTAVYKLSGPDMRGVRQAVTR
C4              GVMGASSQGAQVFRRAGFNAIELGDEAILRTAVYKLSGPDMRGVRQAVTR
C5              GVMGASSQGAQVFRRAGFNAIELGDEAILRTAVYKLSGPDMRGVRQAVTR
C6              GVMGASSQGAQVFRRAGFNAIELGDEAILRTAVYKLSGPDMRGVRQAVTR
                **************************************************

C1              ARRAGLTVRIRRHSDISANEMADTIARADAWRDTEFERGFSMALGRLGDP
C2              ARRAGLTVRIRRHSDISANEMADTIARADAWRDTEFERGFSMALGRLGDP
C3              ARRAGLTVRIRRHSDISANEMADTIARADAWRDTEFERGFSMALGRLGDP
C4              ARRAGLTVRIRRHSDISANEMADTIARADAWRDTEFERGFSMALGRLGDP
C5              ARRAGLTVRIRRHSDISANEMADTIARADAWRDTEFERGFSMALGRLGDP
C6              ARRAGLTVRIRRHSDISANEMADTIARADAWRDTEFERGFSMALGRLGDP
                **************************************************

C1              ADSDCLLVEAVDRDDHVVAILSLVPWGTTGVSLDVMRRSPQSPNGTIELM
C2              ADSDCLLVEAVDRDDHVVAILSLVPWGTTGVSLDVMRRSPQSPNGTIELM
C3              ADSDCLLVEAVDRDDHVVAILSLVPWGTTGVSLDVMRRSPQSPNGTIELM
C4              ADSDCLLVEAVDRDDHVVAILSLVPWGTTGVSLDVMRRSPQSPNGTIELM
C5              ADSDCLLVEAVDRDDHVVAILSLVPWGTTGVSLDVMRRSPQSPNGTIELM
C6              ADSDCLLVEAVDRDDHVVAILSLVPWGTTGVSLDVMRRSPQSPNGTIELM
                **************************************************

C1              VSELALKGETLGIARISLNFTMFRAAFEQGAQLGAGPIARLWRGLLLFFS
C2              VSELALKGETLGIARISLNFTMFRAAFEQGAQLGAGPIARLWRGLLLFFS
C3              VSELALKGETLGIARISLNFTMFRAAFEQGAQLGAGPIARLWRGLLLFFS
C4              VSELALKGETLGIARISLNFTMFRAAFEQGAQLGAGPIARLWRGLLLFFS
C5              VSELALKGETLGIARISLNFTMFRAAFEQGAQLGAGPIARLWRGLLLFFS
C6              VSELALKGETLGIARISLNFTMFRAAFEQGAQLGAGPIARLWRGLLLFFS
                **************************************************

C1              RWWQLETLYRSNIKYLPDWVPRYACYEDARLIPRVGVASVIAEGFLVLPF
C2              RWWQLETLYRSNIKYLPDWVPRYACYEDARLIPRVGVASVIAEGFLVLPF
C3              RWWQLETLYRSNIKYLPDWVPRYACYEDARLIPRVGVASVIAEGFLVLPF
C4              RWWQLETLYRSNIKYLPDWVPRYACYEDARLIPRVGVASVIAEGFLVLPF
C5              RWWQLETLYRSNIKYLPDWVPRYACYEDARLIPRVGVASVIAEGFLVLPF
C6              RWWQLETLYRSNIKYLPDWVPRYACYEDARLIPRVGVASVIAEGFLVLPF
                **************************************************

C1              SRRGRVHTGHHPAVPARLAESGLLHHDGSTPDVSGLQTADVDLEVANSRI
C2              SRRGRVHTGHHPAVPARLAESGLLHHDGSTPDVSGLQTADVDLEVANSRI
C3              SRRGRVHTGHHPAVPARLAESGLLHHDGSTPDVSGLQTADVDLEVANSRI
C4              SRRGRVHTGHHPAVPARLAESGLLHHDGSTPDVSGLQTADVDLEVANSRI
C5              SRRGRVHTGHHPAVPARLAESGLLHHDGSTPDVSGLQTADVDLEVANSRI
C6              SRRGRVHTGHHPAVPARLAESGLLHHDGSTPDVSGLQTADVDLEVANSRI
                **************************************************

C1              PEQVRVRLAKLKTLQLNGIDAYPVGHPPSHTVAQALDADDEGTVSISGRI
C2              PEQVRVRLAKLKTLQLNGIDAYPVGHPPSHTVAQALDADDEGTVSISGRI
C3              PEQVRVRLAKLKTLQLNGIDAYPVGHPPSHTVAQALDADDEGTVSISGRI
C4              PEQVRVRLAKLKTLQLNGIDAYPVGHPPSHTVAQALDADDEGTVSISGRI
C5              PEQVRVRLAKLKTLQLNGIDAYPVGHPPSHTVAQALDADDEGTVSISGRI
C6              PEQVRVRLAKLKTLQLNGIDAYPVGHPPSHTVAQALDADDEGTVSISGRI
                **************************************************

C1              LRIRDYGGVLFAHVRDWSGEIQVLLDNLVLECCCIADFTAAIDLGDIVEM
C2              LRIRDYGGVLFAHVRDWSGEIQVLLDNLVLECCCIADFTAAIDLGDIVEM
C3              LRIRDYGGVLFAHVRDWSGEIQVLLDNLVLECCCIADFTAAIDLGDIVEM
C4              LRIRDYGGVLFAHVRDWSGEIQVLLDNLVLECCCIADFTAAIDLGDIVEM
C5              LRIRDYGGVLFAHVRDWSGEIQVLLDNLVLECCCIADFTAAIDLGDIVEM
C6              LRIRDYGGVLFAHVRDWSGEIQVLLDNLVLECCCIADFTAAIDLGDIVEM
                **************************************************

C1              TGNMGFSKNGTRSLIVRNWRLIGKCLRPLPNKWKGLTDPEARVRTRYVDL
C2              TGNMGFSKNGTRSLIVRNWRLIGKCLRPLPNKWKGLTDPEARVRTRYVDL
C3              TGNMGFSKNGTRSLIVRNWRLIGKCLRPLPNKWKGLTDPEARVRTRYVDL
C4              TGNMGFSKNGTRSLIVRNWRLIGKCLRPLPNKWKGLTDPEARVRTRYVDL
C5              TGNMGFSKNGTRSLIVRNWRLIGKCLRPLPNKWKGLTDPEARVRTRYVDL
C6              TGNMGFSKNGTRSLIVRNWRLIGKCLRPLPNKWKGLTDPEARVRTRYVDL
                **************************************************

C1              AVNTESRNLIMARSCVLRSVREMLFAKGFVEVETPILQQIHGGATARPFA
C2              AVNTESRNLIMARSCVLRSVREMLFAKGFVEVETPILQQIHGGATARPFA
C3              AVNTESRNLIMARSCVLRSVREMLFAKGFVEVETPILQQIHGGATARPFA
C4              AVNTESRNLIMARSCVLRSVREMLFAKGFVEVETPILQQIHGGATARPFA
C5              AVNTESRNLIMARSCVLRSVREMLFAKGFVEVETPILQQIHGGATARPFA
C6              AVNTESRNLIMARSCVLRSVREMLFAKGFVEVETPILQQIHGGATARPFA
                **************************************************

C1              TRINTYDMDLFLRIAPELYLKRLCIGGVERVFELGRAFRNEGVDFSHNPE
C2              TRINTYDMDLFLRIAPELYLKRLCIGGVERVFELGRAFRNEGVDFSHNPE
C3              TRINTYDMDLFLRIAPELYLKRLCIGGVERVFELGRAFRNEGVDFSHNPE
C4              TRINTYDMDLFLRIAPELYLKRLCIGGVERVFELGRAFRNEGVDFSHNPE
C5              TRINTYDMDLFLRIAPELYLKRLCIGGVERVFELGRAFRNEGVDFSHNPE
C6              TRINTYDMDLFLRIAPELYLKRLCIGGVERVFELGRAFRNEGVDFSHNPE
                **************************************************

C1              FTLLEAYQAHADYLMWIDGCRELIQNAAEAANGTQTLMRPRIEGASGTAN
C2              FTLLEAYQAHADYLMWIDGCRELIQNAAEAANGTQTLMRPRIEGASGTAN
C3              FTLLEAYQAHADYLMWIDGCRELIQNAAEAANGTQTLMRPRIEGASGTAN
C4              FTLLEAYQAHADYLMWIDGCRELIQNAAEAANGTQTLMRPRIEGASGTAN
C5              FTLLEAYQAHADYLMWIDGCRELIQNAAEAANGTQTLMRPRIEGASGTAN
C6              FTLLEAYQAHADYLMWIDGCRELIQNAAEAANGTQTLMRPRIEGASGTAN
                **************************************************

C1              HLEPIDISGVWPVKTVYEAVSEALGECVDTSTELATLRKLSDAAHIPYWP
C2              HLEPIDISGVWPVKTVYEAVSEALGECVDTSTELATLRKLSDAAHIPYWP
C3              HLEPIDISGVWPVKTVYEAVSEALGECVDTSTELATLRKLSDAAHIPYWP
C4              HLEPIDISGVWPVKTVYEAVSEALGECVDTSTELATLRKLSDAAHIPYWP
C5              HLEPIDISGVWPVKTVYEAVSEALGECVDTSTELATLRKLSDAAHIPYWP
C6              HLEPIDISGVWPVKTVYEAVSEALGECVDTSTELATLRKLSDAAHIPYWP
                **************************************************

C1              HWDTGAVVLKLYEHLVENRTDQPTFYIDFPTSVSPLTRPHRSKPGVAERW
C2              HWDTGAVVLKLYEHLVENRTDQPTFYIDFPTSVSPLTRPHRSKPGVAERW
C3              HWDTGAVVLKLYEHLVENRTDQPTFYIDFPTSVSPLTRPHRSKPGVAERW
C4              HWDTGAVVLKLYEHLVENRTDQPTFYIDFPTSVSPLTRPHRSKPGVAERW
C5              HWDTGAVVLKLYEHLVENRTDQPTFYIDFPTSVSPLTRPHRSKPGVAERW
C6              HWDTGAVVLKLYEHLVENRTDQPTFYIDFPTSVSPLTRPHRSKPGVAERW
                **************************************************

C1              DLVAWGIELGTAYSELTDPVEQRRRLHEQSLLAVGGNPEAMELDEDFLQA
C2              DLVAWGIELGTAYSELTDPVEQRRRLHEQSLLAVGGNPEAMELDEDFLQA
C3              DLVAWGIELGTAYSELTDPVEQRRRLHEQSLLAVGGNPEAMELDEDFLQA
C4              DLVAWGIELGTAYSELTDPVEQRRRLHEQSLLAVGGNPEAMELDEDFLQA
C5              DLVAWGIELGTAYSELTDPVEQRRRLHEQSLLAVGGNPEAMELDEDFLQA
C6              DLVAWGIELGTAYSELTDPVEQRRRLHEQSLLAVGGNPEAMELDEDFLQA
                **************************************************

C1              MEYAMPPTGGLGMGIDRLVMLITGRSIRETLPFPLAKPH
C2              MEYAMPPTGGLGMGIDRLVMLITGRSIRETLPFPLAKPH
C3              MEYAMPPTGGLGMGIDRLVMLITGRSIRETLPFPLAKPH
C4              MEYAMPPTGGLGMGIDRLVMLITGRSIRETLPFPLAKPH
C5              MEYAMPPTGGLGMGIDRLVMLITGRSIRETLPFPLAKPH
C6              MEYAMPPTGGLGMGIDRLVMLITGRSIRETLPFPLAKPH
                ***************************************




FORMAT of file input.prot.fasta.muscle_rs_0_0.fasta.ipi_bs.fasta Not Supported[FATAL:T-COFFEE]
input.prot.fasta.muscle_rs_0_0.fasta.aln I:93 S:99 BS:94
# TC_SIMILARITY_MATRIX_FORMAT_01
# SEQ_INDEX C1 0
# SEQ_INDEX C2 1
# SEQ_INDEX C3 2
# SEQ_INDEX C4 3
# SEQ_INDEX C5 4
# SEQ_INDEX C6 5
# PW_SEQ_DISTANCES 
BOT	    0    1	 100.00 C1	 C2	 100.00
TOP	    1    0	 100.00 C2	 C1	 100.00
BOT	    0    2	 100.00 C1	 C3	 100.00
TOP	    2    0	 100.00 C3	 C1	 100.00
BOT	    0    3	 100.00 C1	 C4	 100.00
TOP	    3    0	 100.00 C4	 C1	 100.00
BOT	    0    4	 100.00 C1	 C5	 100.00
TOP	    4    0	 100.00 C5	 C1	 100.00
BOT	    0    5	 100.00 C1	 C6	 100.00
TOP	    5    0	 100.00 C6	 C1	 100.00
BOT	    1    2	 100.00 C2	 C3	 100.00
TOP	    2    1	 100.00 C3	 C2	 100.00
BOT	    1    3	 100.00 C2	 C4	 100.00
TOP	    3    1	 100.00 C4	 C2	 100.00
BOT	    1    4	 100.00 C2	 C5	 100.00
TOP	    4    1	 100.00 C5	 C2	 100.00
BOT	    1    5	 100.00 C2	 C6	 100.00
TOP	    5    1	 100.00 C6	 C2	 100.00
BOT	    2    3	 100.00 C3	 C4	 100.00
TOP	    3    2	 100.00 C4	 C3	 100.00
BOT	    2    4	 100.00 C3	 C5	 100.00
TOP	    4    2	 100.00 C5	 C3	 100.00
BOT	    2    5	 100.00 C3	 C6	 100.00
TOP	    5    2	 100.00 C6	 C3	 100.00
BOT	    3    4	 100.00 C4	 C5	 100.00
TOP	    4    3	 100.00 C5	 C4	 100.00
BOT	    3    5	 100.00 C4	 C6	 100.00
TOP	    5    3	 100.00 C6	 C4	 100.00
BOT	    4    5	 100.00 C5	 C6	 100.00
TOP	    5    4	 100.00 C6	 C5	 100.00
AVG	 0	 C1	  *	 100.00
AVG	 1	 C2	  *	 100.00
AVG	 2	 C3	  *	 100.00
AVG	 3	 C4	  *	 100.00
AVG	 4	 C5	  *	 100.00
AVG	 5	 C6	  *	 100.00
TOT	 TOT	  *	 100.00
CLUSTAL W (1.83) multiple sequence alignment

C1              ATTTGTTCGGGGCCTTGTTCTGGCAGCCGGTCGCACTCCCGCTATCACTG
C2              --------------------------------------------------
C3              ATTTGTTCGGGGCCTTGTTCTGGCAGCCGGTCGCACTCCCGCTATCACTG
C4              ATTTGTTCGGGGCCTTGTTCTGGCAGCCGGTCGCACTCCCGCTATCACTG
C5              ATTTGTTCGGGGCCTTGTTCTGGCAGCCGGTCGCACTCCCGCTATCACTG
C6              ATTTGTTCGGGGCCTTGTTCTGGCAGCCGGTCGCACTCCCGCTATCACTG
                                                                  

C1              GGTACCGGCAGCAGCCGGCTGGACCGTCGGTGTAATCGCCACACTGTCAC
C2              --------------------------------------------------
C3              GGTACCGGCAGCAGCCGGCTGGACCGTCGGTGTAATCGCCACACTGTCAC
C4              GGTACCGGCAGCAGCCGGCTGGACCGTCGGTGTAATCGCCACACTGTCAC
C5              GGTACCGGCAGCAGCCGGCTGGACCGTCGGTGTAATCGCCACACTGTCAC
C6              GGTACCGGCAGCAGCCGGCTGGACCGTCGGTGTAATCGCCACACTGTCAC
                                                                  

C1              TGATAGCAAGTGTGTCACCGTTGATCAGGTGGCTCATTAGGGTCCCACGT
C2              --------------------------------------------------
C3              TGATAGCAAGTGTGTCACCGTTGATCAGGTGGCTCATTAGGGTCCCACGT
C4              TGATAGCAAGTGTGTCACCGTTGATCAGGTGGCTCATTAGGGTCCCACGT
C5              TGATAGCAAGTGTGTCACCGTTGATCAGGTGGCTCATTAGGGTCCCACGT
C6              TGATAGCAAGTGTGTCACCGTTGATCAGGTGGCTCATTAGGGTCCCACGT
                                                                  

C1              GAATTCATCAACAACTACCTTTTTAATTTTCCGGACACCAGCATCGCCTG
C2              --------------------------------------------------
C3              GAATTCATCAACAACTACCTTTTTAATTTTCCGGACACCAGCATCGCCTG
C4              GAATTCATCAACAACTACCTTTTTAATTTTCCGGACACCAGCATCGCCTG
C5              GAATTCATCAACAACTACCTTTTTAATTTTCCGGACACCAGCATCGCCTG
C6              GAATTCATCAACAACTACCTTTTTAATTTTCCGGACACCAGCATCGCCTG
                                                                  

C1              GTCGTTCGTGCTGGCGCTGTTAGCCGCCGCGCTAACCACGCGCAAACGCA
C2              -------GTGCTGGCGCTGTTAGCCGCCGCGCTAACCACGCGCAAACGCA
C3              GTCGTTCGTGCTGGCGCTGTTAGCCGCCGCGCTAACCACGCGCAAACGCA
C4              GTCGTTCGTGCTGGCGCTGTTAGCCGCCGCGCTAACCACGCGCAAACGCA
C5              GTCGTTCGTGCTGGCGCTGTTAGCCGCCGCGCTAACCACGCGCAAACGCA
C6              GTCGTTCGTGCTGGCGCTGTTAGCCGCCGCGCTAACCACGCGCAAACGCA
                       *******************************************

C1              TCGCCTGGCTGCTGTTGCTCGGCAATATGGTGCTCGCCGCCGTGTTAAAC
C2              TCGCCTGGCTGCTGTTGCTCGGCAATATGGTGCTCGCCGCCGTGTTAAAC
C3              TCGCCTGGCTGCTGTTGCTCGGCAATATGGTGCTCGCCGCCGTGTTAAAC
C4              TCGCCTGGCTGCTGTTGCTCGGCAATATGGTGCTCGCCGCCGTGTTAAAC
C5              TCGCCTGGCTGCTGTTGCTCGGCAATATGGTGCTCGCCGCCGTGTTAAAC
C6              TCGCCTGGCTGCTGTTGCTCGGCAATATGGTGCTCGCCGCCGTGTTAAAC
                **************************************************

C1              GCTGTGGATATGGCAGCGAATGGCAACACCCCAGCCGAGACATTCGGCGA
C2              GCTGTGGATATGGCAGCGAATGGCAACACCCCAGCCGAGACATTCGGCGA
C3              GCTGTGGATATGGCAGCGAATGGCAACACCCCAGCCGAGACATTCGGCGA
C4              GCTGTGGATATGGCAGCGAATGGCAACACCCCAGCCGAGACATTCGGCGA
C5              GCTGTGGATATGGCAGCGAATGGCAACACCCCAGCCGAGACATTCGGCGA
C6              GCTGTGGATATGGCAGCGAATGGCAACACCCCAGCCGAGACATTCGGCGA
                **************************************************

C1              AAACCTCGGGTTCGCAGTGCATGTTGTTGCGATCTTGCTGCTGGTTTTGA
C2              AAACCTCGGGTTCGCAGTGCATGTTGTTGCGATCTTGCTGCTGGTTTTGA
C3              AAACCTCGGGTTCGCAGTGCATGTTGTTGCGATCTTGCTGCTGGTTTTGA
C4              AAACCTCGGGTTCGCAGTGCATGTTGTTGCGATCTTGCTGCTGGTTTTGA
C5              AAACCTCGGGTTCGCAGTGCATGTTGTTGCGATCTTGCTGCTGGTTTTGA
C6              AAACCTCGGGTTCGCAGTGCATGTTGTTGCGATCTTGCTGCTGGTTTTGA
                **************************************************

C1              GCTATCGGGAATTCTGGGCCAAAGTCCGCCGAGGCGCGCTGTTCAAAGCG
C2              GCTATCGGGAATTCTGGGCCAAAGTCCGCCGAGGCGCGCTGTTCAAAGCG
C3              GCTATCGGGAATTCTGGGCCAAAGTCCGCCGAGGCGCGCTGTTCAAAGCG
C4              GCTATCGGGAATTCTGGGCCAAAGTCCGCCGAGGCGCGCTGTTCAAAGCG
C5              GCTATCGGGAATTCTGGGCCAAAGTCCGCCGAGGCGCGCTGTTCAAAGCG
C6              GCTATCGGGAATTCTGGGCCAAAGTCCGCCGAGGCGCGCTGTTCAAAGCG
                **************************************************

C1              GCTGCGGTGCTGGTTGCCGGAGACGTGATCGGGATACTGTTGTCTTTGGG
C2              GCTGCGGTGCTGGTTGCCGGAGACGTGATCGGGATACTGTTGTCTTTGGG
C3              GCTGCGGTGCTGGTTGCCGGAGACGTGATCGGGATACTGTTGTCTTTGGG
C4              GCTGCGGTGCTGGTTGCCGGAGACGTGATCGGGATACTGTTGTCTTTGGG
C5              GCTGCGGTGCTGGTTGCCGGAGACGTGATCGGGATACTGTTGTCTTTGGG
C6              GCTGCGGTGCTGGTTGCCGGAGACGTGATCGGGATACTGTTGTCTTTGGG
                **************************************************

C1              CCTGGTCGAGCTGTTCCCCGGATCGCTAGCGCGGCAGGATCGCCTGCCGT
C2              CCTGGTCGAGCTGTTCCCCGGATCGCTAGCGCGGCAGGATCGCCTGCCGT
C3              CCTGGTCGAGCTGTTCCCCGGATCGCTAGCGCGGCAGGATCGCCTGCCGT
C4              CCTGGTCGAGCTGTTCCCCGGATCGCTAGCGCGGCAGGATCGCCTGCCGT
C5              CCTGGTCGAGCTGTTCCCCGGATCGCTAGCGCGGCAGGATCGCCTGCCGT
C6              CCTGGTCGAGCTGTTCCCCGGATCGCTAGCGCGGCAGGATCGCCTGCCGT
                **************************************************

C1              ATGTGGCCAATCGGGTGGTCGGATTCGCACTTGCCGATCCCGACCTCTTC
C2              ATGTGGCCAATCGGGTGGTCGGATTCGCACTTGCCGATCCCGACCTCTTC
C3              ATGTGGCCAATCGGGTGGTCGGATTCGCACTTGCCGATCCCGACCTCTTC
C4              ATGTGGCCAATCGGGTGGTCGGATTCGCACTTGCCGATCCCGACCTCTTC
C5              ATGTGGCCAATCGGGTGGTCGGATTCGCACTTGCCGATCCCGACCTCTTC
C6              ATGTGGCCAATCGGGTGGTCGGATTCGCACTTGCCGATCCCGACCTCTTC
                **************************************************

C1              AGCGGCAAACCGCACGTCTTACTCAACGCAATCTTCGGCTTGTTCGGCGC
C2              AGCGGCAAACCGCACGTCTTACTCAACGCAATCTTCGGCTTGTTCGGCGC
C3              AGCGGCAAACCGCACGTCTTACTCAACGCAATCTTCGGCTTGTTCGGCGC
C4              AGCGGCAAACCGCACGTCTTACTCAACGCAATCTTCGGCTTGTTCGGCGC
C5              AGCGGCAAACCGCACGTCTTACTCAACGCAATCTTCGGCTTGTTCGGCGC
C6              AGCGGCAAACCGCACGTCTTACTCAACGCAATCTTCGGCTTGTTCGGCGC
                **************************************************

C1              CCTCGCGTTGATCATGGCCACTATCGTGCTGTTTCAGTCCCAGCGTGCAG
C2              CCTCGCGTTGATCATGGCCACTATCGTGCTGTTTCAGTCCCAGCGTGCAG
C3              CCTCGCGTTGATCATGGCCACTATCGTGCTGTTTCAGTCCCAGCGTGCAG
C4              CCTCGCGTTGATCATGGCCACTATCGTGCTGTTTCAGTCCCAGCGTGCAG
C5              CCTCGCGTTGATCATGGCCACTATCGTGCTGTTTCAGTCCCAGCGTGCAG
C6              CCTCGCGTTGATCATGGCCACTATCGTGCTGTTTCAGTCCCAGCGTGCAG
                **************************************************

C1              ATAACGCCCTGACCGGCGAGGATGAGTCCGCCATCCGCGGGCTACTTGAG
C2              ATAACGCCCTGACCGGCGAGGATGAGTCCGCCATCCGCGGGCTACTTGAG
C3              ATAACGCCCTGACCGGCGAGGATGAGTCCGCCATCCGCGGGCTACTTGAG
C4              ATAACGCCCTGACCGGCGAGGATGAGTCCGCCATCCGCGGGCTACTTGAG
C5              ATAACGCCCTGACCGGCGAGGATGAGTCCGCCATCCGCGGGCTACTTGAG
C6              ATAACGCCCTGACCGGCGAGGATGAGTCCGCCATCCGCGGGCTACTTGAG
                **************************************************

C1              CTGTATGGCAAGAACGACTCACTGGGTTACTTCGCCACCCGGCGCGATAA
C2              CTGTATGGCAAGAACGACTCACTGGGTTACTTCGCCACCCGGCGCGATAA
C3              CTGTATGGCAAGAACGACTCACTGGGTTACTTCGCCACCCGGCGCGATAA
C4              CTGTATGGCAAGAACGACTCACTGGGTTACTTCGCCACCCGGCGCGATAA
C5              CTGTATGGCAAGAACGACTCACTGGGTTACTTCGCCACCCGGCGCGATAA
C6              CTGTATGGCAAGAACGACTCACTGGGTTACTTCGCCACCCGGCGCGATAA
                **************************************************

C1              GTCGGTGATCTTCGCGCACAATGGCCGCGCGGCCATAACCTATCGAGTTG
C2              GTCGGTGATCTTCGCGCACAATGGCCGCGCGGCCATAACCTATCGAGTTG
C3              GTCGGTGATCTTCGCGCACAATGGCCGCGCGGCCATAACCTATCGAGTTG
C4              GTCGGTGATCTTCGCGCACAATGGCCGCGCGGCCATAACCTATCGAGTTG
C5              GTCGGTGATCTTCGCGCACAATGGCCGCGCGGCCATAACCTATCGAGTTG
C6              GTCGGTGATCTTCGCGCACAATGGCCGCGCGGCCATAACCTATCGAGTTG
                **************************************************

C1              AGATAGGAGTCTGCCTAGCCAGCGGCGACCCAGTAGGCGATCCCGGGGCA
C2              AGATAGGAGTCTGCCTAGCCAGCGGCGACCCAGTAGGCGATCCCGGGGCA
C3              AGATAGGAGTCTGCCTAGCCAGCGGCGACCCAGTAGGCGATCCCGGGGCA
C4              AGATAGGAGTCTGCCTAGCCAGCGGCGACCCAGTAGGCGATCCCGGGGCA
C5              AGATAGGAGTCTGCCTAGCCAGCGGCGACCCAGTAGGCGATCCCGGGGCA
C6              AGATAGGAGTCTGCCTAGCCAGCGGCGACCCAGTAGGCGATCCCGGGGCA
                **************************************************

C1              TGGCCGCAGGCCGTCGATGCGTGGTTAGAGCTTTGCCAGACGTACGGTTG
C2              TGGCCGCAGGCCGTCGATGCGTGGTTAGAGCTTTGCCAGACGTACGGTTG
C3              TGGCCGCAGGCCGTCGATGCGTGGTTAGAGCTTTGCCAGACGTACGGTTG
C4              TGGCCGCAGGCCGTCGATGCGTGGTTAGAGCTTTGCCAGACGTACGGTTG
C5              TGGCCGCAGGCCGTCGATGCGTGGTTAGAGCTTTGCCAGACGTACGGTTG
C6              TGGCCGCAGGCCGTCGATGCGTGGTTAGAGCTTTGCCAGACGTACGGTTG
                **************************************************

C1              GGCGCCCGGTGTGATGGGGGCCAGTTCACAGGGGGCCCAGGTATTTCGTA
C2              GGCGCCCGGTGTGATGGGGGCCAGTTCACAGGGGGCCCAGGTATTTCGTA
C3              GGCGCCCGGTGTGATGGGGGCCAGTTCACAGGGGGCCCAGGTATTTCGTA
C4              GGCGCCCGGTGTGATGGGGGCCAGTTCACAGGGGGCCCAGGTATTTCGTA
C5              GGCGCCCGGTGTGATGGGGGCCAGTTCACAGGGGGCCCAGGTATTTCGTA
C6              GGCGCCCGGTGTGATGGGGGCCAGTTCACAGGGGGCCCAGGTATTTCGTA
                **************************************************

C1              GGGCCGGCTTCAACGCCATAGAACTCGGCGACGAGGCGATCTTGCGGACT
C2              GGGCCGGCTTCAACGCCATAGAACTCGGCGACGAGGCGATCTTGCGGACT
C3              GGGCCGGCTTCAACGCCATAGAACTCGGCGACGAGGCGATCTTGCGGACT
C4              GGGCCGGCTTCAACGCCATAGAACTCGGCGACGAGGCGATCTTGCGGACT
C5              GGGCCGGCTTCAACGCCATAGAACTCGGCGACGAGGCGATCTTGCGGACT
C6              GGGCCGGCTTCAACGCCATAGAACTCGGCGACGAGGCGATCTTGCGGACT
                **************************************************

C1              GCCGTTTACAAACTTTCCGGCCCCGACATGCGCGGAGTGCGCCAGGCGGT
C2              GCCGTTTACAAACTTTCCGGCCCCGACATGCGCGGAGTGCGCCAGGCGGT
C3              GCCGTTTACAAACTTTCCGGCCCCGACATGCGCGGAGTGCGCCAGGCGGT
C4              GCCGTTTACAAACTTTCCGGCCCCGACATGCGCGGAGTGCGCCAGGCGGT
C5              GCCGTTTACAAACTTTCCGGCCCCGACATGCGCGGAGTGCGCCAGGCGGT
C6              GCCGTTTACAAACTTTCCGGCCCCGACATGCGCGGAGTGCGCCAGGCGGT
                **************************************************

C1              GACACGGGCACGCCGGGCCGGACTGACCGTACGCATTAGACGGCACAGCG
C2              GACACGGGCACGCCGGGCCGGACTGACCGTACGCATTAGACGGCACAGCG
C3              GACACGGGCACGCCGGGCCGGACTGACCGTACGCATTAGACGGCACAGCG
C4              GACACGGGCACGCCGGGCCGGACTGACCGTACGCATTAGACGGCACAGCG
C5              GACACGGGCACGCCGGGCCGGACTGACCGTACGCATTAGACGGCACAGCG
C6              GACACGGGCACGCCGGGCCGGACTGACCGTACGCATTAGACGGCACAGCG
                **************************************************

C1              ACATCTCCGCCAACGAGATGGCAGACACCATCGCGCGTGCTGACGCCTGG
C2              ACATCTCCGCCAACGAGATGGCAGACACCATCGCGCGTGCTGACGCCTGG
C3              ACATCTCCGCCAACGAGATGGCAGACACCATCGCGCGTGCTGACGCCTGG
C4              ACATCTCCGCCAACGAGATGGCAGACACCATCGCGCGTGCTGACGCCTGG
C5              ACATCTCCGCCAACGAGATGGCAGACACCATCGCGCGTGCTGACGCCTGG
C6              ACATCTCCGCCAACGAGATGGCAGACACCATCGCGCGTGCTGACGCCTGG
                **************************************************

C1              CGCGACACCGAATTCGAACGTGGCTTTTCGATGGCGCTGGGCCGGCTCGG
C2              CGCGACACCGAATTCGAACGTGGCTTTTCGATGGCGCTGGGCCGGCTCGG
C3              CGCGACACCGAATTCGAACGTGGCTTTTCGATGGCGCTGGGCCGGCTCGG
C4              CGCGACACCGAATTCGAACGTGGCTTTTCGATGGCGCTGGGCCGGCTCGG
C5              CGCGACACCGAATTCGAACGTGGCTTTTCGATGGCGCTGGGCCGGCTCGG
C6              CGCGACACCGAATTCGAACGTGGCTTTTCGATGGCGCTGGGCCGGCTCGG
                **************************************************

C1              CGATCCGGCTGATTCAGATTGCCTGCTGGTCGAAGCAGTGGACCGCGACG
C2              CGATCCGGCTGATTCAGATTGCCTGCTGGTCGAAGCAGTGGACCGCGACG
C3              CGATCCGGCTGATTCAGATTGCCTGCTGGTCGAAGCAGTGGACCGCGACG
C4              CGATCCGGCTGATTCAGATTGCCTGCTGGTCGAAGCAGTGGACCGCGACG
C5              CGATCCGGCTGATTCAGATTGCCTGCTGGTCGAAGCAGTGGACCGCGACG
C6              CGATCCGGCTGATTCAGATTGCCTGCTGGTCGAAGCAGTGGACCGCGACG
                **************************************************

C1              ACCATGTCGTTGCGATACTGTCACTGGTCCCGTGGGGAACCACCGGCGTC
C2              ACCATGTCGTTGCGATACTGTCACTGGTCCCGTGGGGAACCACCGGCGTC
C3              ACCATGTCGTTGCGATACTGTCACTGGTCCCGTGGGGAACCACCGGCGTC
C4              ACCATGTCGTTGCGATACTGTCACTGGTCCCGTGGGGAACCACCGGCGTC
C5              ACCATGTCGTTGCGATACTGTCACTGGTCCCGTGGGGAACCACCGGCGTC
C6              ACCATGTCGTTGCGATACTGTCACTGGTCCCGTGGGGAACCACCGGCGTC
                **************************************************

C1              TCGTTGGACGTGATGCGCCGTTCTCCACAATCACCCAACGGCACCATCGA
C2              TCGTTGGACGTGATGCGCCGTTCTCCACAATCACCCAACGGCACCATCGA
C3              TCGTTGGACGTGATGCGCCGTTCTCCACAATCACCCAACGGCACCATCGA
C4              TCGTTGGACGTGATGCGCCGTTCTCCACAATCACCCAACGGCACCATCGA
C5              TCGTTGGACGTGATGCGCCGTTCTCCACAATCACCCAACGGCACCATCGA
C6              TCGTTGGACGTGATGCGCCGTTCTCCACAATCACCCAACGGCACCATCGA
                **************************************************

C1              ACTCATGGTCAGCGAGCTAGCCCTCAAGGGCGAGACTCTTGGGATCGCCC
C2              ACTCATGGTCAGCGAGCTAGCCCTCAAGGGCGAGACTCTTGGGATCGCCC
C3              ACTCATGGTCAGCGAGCTAGCCCTCAAGGGCGAGACTCTTGGGATCGCCC
C4              ACTCATGGTCAGCGAGCTAGCCCTCAAGGGCGAGACTCTTGGGATCGCCC
C5              ACTCATGGTCAGCGAGCTAGCCCTCAAGGGCGAGACTCTTGGGATCGCCC
C6              ACTCATGGTCAGCGAGCTAGCCCTCAAGGGCGAGACTCTTGGGATCGCCC
                **************************************************

C1              GCATTTCGTTGAATTTTACGATGTTTCGCGCCGCGTTCGAGCAAGGTGCT
C2              GCATTTCGTTGAATTTTACGATGTTTCGCGCCGCGTTCGAGCAAGGTGCT
C3              GCATTTCGTTGAATTTTACGATGTTTCGCGCCGCGTTCGAGCAAGGTGCT
C4              GCATTTCGTTGAATTTTACGATGTTTCGCGCCGCGTTCGAGCAAGGTGCT
C5              GCATTTCGTTGAATTTTACGATGTTTCGCGCCGCGTTCGAGCAAGGTGCT
C6              GCATTTCGTTGAATTTTACGATGTTTCGCGCCGCGTTCGAGCAAGGTGCT
                **************************************************

C1              CAACTCGGCGCTGGCCCAATTGCACGGTTGTGGCGGGGGCTGCTGTTGTT
C2              CAACTCGGCGCTGGCCCAATTGCACGGTTGTGGCGGGGGCTGCTGTTGTT
C3              CAACTCGGCGCTGGCCCAATTGCACGGTTGTGGCGGGGGCTGCTGTTGTT
C4              CAACTCGGCGCTGGCCCAATTGCACGGTTGTGGCGGGGGCTGCTGTTGTT
C5              CAACTCGGCGCTGGCCCAATTGCACGGTTGTGGCGGGGGCTGCTGTTGTT
C6              CAACTCGGCGCTGGCCCAATTGCACGGTTGTGGCGGGGGCTGCTGTTGTT
                **************************************************

C1              TTTCTCACGGTGGTGGCAGTTGGAGACGCTGTACCGCTCGAACATAAAAT
C2              TTTCTCACGGTGGTGGCAGTTGGAGACGCTGTACCGCTCGAACATAAAAT
C3              TTTCTCACGGTGGTGGCAGTTGGAGACGCTGTACCGCTCGAACATAAAAT
C4              TTTCTCACGGTGGTGGCAGTTGGAGACGCTGTACCGCTCGAACATAAAAT
C5              TTTCTCACGGTGGTGGCAGTTGGAGACGCTGTACCGCTCGAACATAAAAT
C6              TTTCTCACGGTGGTGGCAGTTGGAGACGCTGTACCGCTCGAACATAAAAT
                **************************************************

C1              ACCTTCCTGACTGGGTCCCTCGTTACGCCTGCTACGAGGACGCCCGGTTG
C2              ACCTTCCTGACTGGGTCCCTCGTTACGCCTGCTACGAGGACGCCCGGTTG
C3              ACCTTCCTGACTGGGTCCCTCGTTACGCCTGCTACGAGGACGCCCGGTTG
C4              ACCTTCCTGACTGGGTCCCTCGTTACGCCTGCTACGAGGACGCCCGGTTG
C5              ACCTTCCTGACTGGGTCCCTCGTTACGCCTGCTACGAGGACGCCCGGTTG
C6              ACCTTCCTGACTGGGTCCCTCGTTACGCCTGCTACGAGGACGCCCGGTTG
                **************************************************

C1              ATTCCGCGGGTGGGGGTTGCCTCGGTGATCGCCGAGGGTTTCCTTGTGTT
C2              ATTCCGCGGGTGGGGGTTGCCTCGGTGATCGCCGAGGGTTTCCTTGTGTT
C3              ATTCCGCGGGTGGGGGTTGCCTCGGTGATCGCCGAGGGTTTCCTTGTGTT
C4              ATTCCGCGGGTGGGGGTTGCCTCGGTGATCGCCGAGGGTTTCCTTGTGTT
C5              ATTCCGCGGGTGGGGGTTGCCTCGGTGATCGCCGAGGGTTTCCTTGTGTT
C6              ATTCCGCGGGTGGGGGTTGCCTCGGTGATCGCCGAGGGTTTCCTTGTGTT
                **************************************************

C1              ACCGTTCAGCCGACGCGGCCGGGTGCACACCGGCCATCATCCGGCTGTGC
C2              ACCGTTCAGCCGACGCGGCCGGGTGCACACCGGCCATCATCCGGCTGTGC
C3              ACCGTTCAGCCGACGCGGCCGGGTGCACACCGGCCATCATCCGGCTGTGC
C4              ACCGTTCAGCCGACGCGGCCGGGTGCACACCGGCCATCATCCGGCTGTGC
C5              ACCGTTCAGCCGACGCGGCCGGGTGCACACCGGCCATCATCCGGCTGTGC
C6              ACCGTTCAGCCGACGCGGCCGGGTGCACACCGGCCATCATCCGGCTGTGC
                **************************************************

C1              CAGCGCGGTTAGCAGAATCCGGGCTGCTGCACCACGATGGGTCGACTCCA
C2              CAGCGCGGTTAGCAGAATCCGGGCTGCTGCACCACGATGGGTCGACTCCA
C3              CAGCGCGGTTAGCAGAATCCGGGCTGCTGCACCACGATGGGTCGACTCCA
C4              CAGCGCGGTTAGCAGAATCCGGGCTGCTGCACCACGATGGGTCGACTCCA
C5              CAGCGCGGTTAGCAGAATCCGGGCTGCTGCACCACGATGGGTCGACTCCA
C6              CAGCGCGGTTAGCAGAATCCGGGCTGCTGCACCACGATGGGTCGACTCCA
                **************************************************

C1              GATGTCAGCGGATTGCAAACGGCGGACGTCGATTTGGAAGTAGCGAATTC
C2              GATGTCAGCGGATTGCAAACGGCGGACGTCGATTTGGAAGTAGCGAATTC
C3              GATGTCAGCGGATTGCAAACGGCGGACGTCGATTTGGAAGTAGCGAATTC
C4              GATGTCAGCGGATTGCAAACGGCGGACGTCGATTTGGAAGTAGCGAATTC
C5              GATGTCAGCGGATTGCAAACGGCGGACGTCGATTTGGAAGTAGCGAATTC
C6              GATGTCAGCGGATTGCAAACGGCGGACGTCGATTTGGAAGTAGCGAATTC
                **************************************************

C1              CCGTATACCCGAACAGGTACGGGTGCGTCTGGCAAAACTTAAGACATTGC
C2              CCGTATACCCGAACAGGTACGGGTGCGTCTGGCAAAACTTAAGACATTGC
C3              CCGTATACCCGAACAGGTACGGGTGCGTCTGGCAAAACTTAAGACATTGC
C4              CCGTATACCCGAACAGGTACGGGTGCGTCTGGCAAAACTTAAGACATTGC
C5              CCGTATACCCGAACAGGTACGGGTGCGTCTGGCAAAACTTAAGACATTGC
C6              CCGTATACCCGAACAGGTACGGGTGCGTCTGGCAAAACTTAAGACATTGC
                **************************************************

C1              AACTCAACGGTATTGACGCTTATCCGGTGGGACACCCGCCTAGCCACACA
C2              AACTCAACGGTATTGACGCTTATCCGGTGGGACACCCGCCTAGCCACACA
C3              AACTCAACGGTATTGACGCTTATCCGGTGGGACACCCGCCTAGCCACACA
C4              AACTCAACGGTATTGACGCTTATCCGGTGGGACACCCGCCTAGCCACACA
C5              AACTCAACGGTATTGACGCTTATCCGGTGGGACACCCGCCTAGCCACACA
C6              AACTCAACGGTATTGACGCTTATCCGGTGGGACACCCGCCTAGCCACACA
                **************************************************

C1              GTCGCCCAGGCTCTGGATGCCGACGACGAAGGCACCGTCTCGATATCTGG
C2              GTCGCCCAGGCTCTGGATGCCGACGACGAAGGCACCGTCTCGATATCTGG
C3              GTCGCCCAGGCTCTGGATGCCGACGACGAAGGCACCGTCTCGATATCTGG
C4              GTCGCCCAGGCTCTGGATGCCGACGACGAAGGCACCGTCTCGATATCTGG
C5              GTCGCCCAGGCTCTGGATGCCGACGACGAAGGCACCGTCTCGATATCTGG
C6              GTCGCCCAGGCTCTGGATGCCGACGACGAAGGCACCGTCTCGATATCTGG
                **************************************************

C1              ACGCATATTGCGGATACGTGACTATGGCGGCGTGTTGTTTGCTCATGTGC
C2              ACGCATATTGCGGATACGTGACTATGGCGGCGTGTTGTTTGCTCATGTGC
C3              ACGCATATTGCGGATACGTGACTATGGCGGCGTGTTGTTTGCTCATGTGC
C4              ACGCATATTGCGGATACGTGACTATGGCGGCGTGTTGTTTGCTCATGTGC
C5              ACGCATATTGCGGATACGTGACTATGGCGGCGTGTTGTTTGCTCATGTGC
C6              ACGCATATTGCGGATACGTGACTATGGCGGCGTGTTGTTTGCTCATGTGC
                **************************************************

C1              GTGACTGGTCGGGCGAAATACAAGTGCTGCTGGATAATTTAGTGCTGGAG
C2              GTGACTGGTCGGGCGAAATACAAGTGCTGCTGGATAATTTAGTGCTGGAG
C3              GTGACTGGTCGGGCGAAATACAAGTGCTGCTGGATAATTTAGTGCTGGAG
C4              GTGACTGGTCGGGCGAAATACAAGTGCTGCTGGATAATTTAGTGCTGGAG
C5              GTGACTGGTCGGGCGAAATACAAGTGCTGCTGGATAATTTAGTGCTGGAG
C6              GTGACTGGTCGGGCGAAATACAAGTGCTGCTGGATAATTTAGTGCTGGAG
                **************************************************

C1              TGCTGCTGCATCGCAGATTTCACCGCAGCCATTGATCTGGGCGATATAGT
C2              TGCTGCTGCATCGCAGATTTCACCGCAGCCATTGATCTGGGCGATATAGT
C3              TGCTGCTGCATCGCAGATTTCACCGCAGCCATTGATCTGGGCGATATAGT
C4              TGCTGCTGCATCGCAGATTTCACCGCAGCCATTGATCTGGGCGATATAGT
C5              TGCTGCTGCATCGCAGATTTCACCGCAGCCATTGATCTGGGCGATATAGT
C6              TGCTGCTGCATCGCAGATTTCACCGCAGCCATTGATCTGGGCGATATAGT
                **************************************************

C1              CGAAATGACCGGGAACATGGGCTTCAGCAAAAACGGGACTCGCTCGTTGA
C2              CGAAATGACCGGGAACATGGGCTTCAGCAAAAACGGGACTCGCTCGTTGA
C3              CGAAATGACCGGGAACATGGGCTTCAGCAAAAACGGGACTCGCTCGTTGA
C4              CGAAATGACCGGGAACATGGGCTTCAGCAAAAACGGGACTCGCTCGTTGA
C5              CGAAATGACCGGGAACATGGGCTTCAGCAAAAACGGGACTCGCTCGTTGA
C6              CGAAATGACCGGGAACATGGGCTTCAGCAAAAACGGGACTCGCTCGTTGA
                **************************************************

C1              TAGTACGCAACTGGCGGCTGATCGGTAAATGCTTACGGCCGCTACCGAAC
C2              TAGTACGCAACTGGCGGCTGATCGGTAAATGCTTACGGCCGCTACCGAAC
C3              TAGTACGCAACTGGCGGCTGATCGGTAAATGCTTACGGCCGCTACCGAAC
C4              TAGTACGCAACTGGCGGCTGATCGGTAAATGCTTACGGCCGCTACCGAAC
C5              TAGTACGCAACTGGCGGCTGATCGGTAAATGCTTACGGCCGCTACCGAAC
C6              TAGTACGCAACTGGCGGCTGATCGGTAAATGCTTACGGCCGCTACCGAAC
                **************************************************

C1              AAATGGAAGGGGTTAACCGACCCAGAAGCCCGGGTGCGAACCCGTTATGT
C2              AAATGGAAGGGGTTAACCGACCCAGAAGCCCGGGTGCGAACCCGTTATGT
C3              AAATGGAAGGGGTTAACCGACCCAGAAGCCCGGGTGCGAACCCGTTATGT
C4              AAATGGAAGGGGTTAACCGACCCAGAAGCCCGGGTGCGAACCCGTTATGT
C5              AAATGGAAGGGGTTAACCGACCCAGAAGCCCGGGTGCGAACCCGTTATGT
C6              AAATGGAAGGGGTTAACCGACCCAGAAGCCCGGGTGCGAACCCGTTATGT
                **************************************************

C1              CGATCTGGCAGTCAATACCGAGTCCCGTAACCTGATCATGGCTCGCAGCT
C2              CGATCTGGCAGTCAATACCGAGTCCCGTAACCTGATCATGGCTCGCAGCT
C3              CGATCTGGCAGTCAATACCGAGTCCCGTAACCTGATCATGGCTCGCAGCT
C4              CGATCTGGCAGTCAATACCGAGTCCCGTAACCTGATCATGGCTCGCAGCT
C5              CGATCTGGCAGTCAATACCGAGTCCCGTAACCTGATCATGGCTCGCAGCT
C6              CGATCTGGCAGTCAATACCGAGTCCCGTAACCTGATCATGGCTCGCAGCT
                **************************************************

C1              GCGTGTTGCGCTCGGTCAGGGAGATGCTGTTCGCTAAAGGATTTGTCGAA
C2              GCGTGTTGCGCTCGGTCAGGGAGATGCTGTTCGCTAAAGGATTTGTCGAA
C3              GCGTGTTGCGCTCGGTCAGGGAGATGCTGTTCGCTAAAGGATTTGTCGAA
C4              GCGTGTTGCGCTCGGTCAGGGAGATGCTGTTCGCTAAAGGATTTGTCGAA
C5              GCGTGTTGCGCTCGGTCAGGGAGATGCTGTTCGCTAAAGGATTTGTCGAA
C6              GCGTGTTGCGCTCGGTCAGGGAGATGCTGTTCGCTAAAGGATTTGTCGAA
                **************************************************

C1              GTCGAGACCCCAATCCTGCAACAAATTCACGGCGGCGCCACTGCCCGGCC
C2              GTCGAGACCCCAATCCTGCAACAAATTCACGGCGGCGCCACTGCCCGGCC
C3              GTCGAGACCCCAATCCTGCAACAAATTCACGGCGGCGCCACTGCCCGGCC
C4              GTCGAGACCCCAATCCTGCAACAAATTCACGGCGGCGCCACTGCCCGGCC
C5              GTCGAGACCCCAATCCTGCAACAAATTCACGGCGGCGCCACTGCCCGGCC
C6              GTCGAGACCCCAATCCTGCAACAAATTCACGGCGGCGCCACTGCCCGGCC
                **************************************************

C1              ATTCGCCACTCGCATCAATACCTATGACATGGATCTGTTCCTACGCATTG
C2              ATTCGCCACTCGCATCAATACCTATGACATGGATCTGTTCCTACGCATTG
C3              ATTCGCCACTCGCATCAATACCTATGACATGGATCTGTTCCTACGCATTG
C4              ATTCGCCACTCGCATCAATACCTATGACATGGATCTGTTCCTACGCATTG
C5              ATTCGCCACTCGCATCAATACCTATGACATGGATCTGTTCCTACGCATTG
C6              ATTCGCCACTCGCATCAATACCTATGACATGGATCTGTTCCTACGCATTG
                **************************************************

C1              CCCCGGAGCTCTATCTTAAGAGGCTGTGCATCGGGGGTGTAGAGCGGGTC
C2              CCCCGGAGCTCTATCTTAAGAGGCTGTGCATCGGGGGTGTAGAGCGGGTC
C3              CCCCGGAGCTCTATCTTAAGAGGCTGTGCATCGGGGGTGTAGAGCGGGTC
C4              CCCCGGAGCTCTATCTTAAGAGGCTGTGCATCGGGGGTGTAGAGCGGGTC
C5              CCCCGGAGCTCTATCTTAAGAGGCTGTGCATCGGGGGTGTAGAGCGGGTC
C6              CCCCGGAGCTCTATCTTAAGAGGCTGTGCATCGGGGGTGTAGAGCGGGTC
                **************************************************

C1              TTCGAGCTGGGCCGGGCCTTCCGTAACGAGGGAGTAGACTTTAGTCACAA
C2              TTCGAGCTGGGCCGGGCCTTCCGTAACGAGGGAGTAGACTTTAGTCACAA
C3              TTCGAGCTGGGCCGGGCCTTCCGTAACGAGGGAGTAGACTTTAGTCACAA
C4              TTCGAGCTGGGCCGGGCCTTCCGTAACGAGGGAGTAGACTTTAGTCACAA
C5              TTCGAGCTGGGCCGGGCCTTCCGTAACGAGGGAGTAGACTTTAGTCACAA
C6              TTCGAGCTGGGCCGGGCCTTCCGTAACGAGGGAGTAGACTTTAGTCACAA
                **************************************************

C1              TCCGGAGTTCACCTTGCTGGAGGCCTACCAGGCGCACGCAGACTACCTAA
C2              TCCGGAGTTCACCTTGCTGGAGGCCTACCAGGCGCACGCAGACTACCTAA
C3              TCCGGAGTTCACCTTGCTGGAGGCCTACCAGGCGCACGCAGACTACCTAA
C4              TCCGGAGTTCACCTTGCTGGAGGCCTACCAGGCGCACGCAGACTACCTAA
C5              TCCGGAGTTCACCTTGCTGGAGGCCTACCAGGCGCACGCAGACTACCTAA
C6              TCCGGAGTTCACCTTGCTGGAGGCCTACCAGGCGCACGCAGACTACCTAA
                **************************************************

C1              TGTGGATCGACGGCTGCCGAGAATTGATCCAGAATGCCGCCGAAGCCGCG
C2              TGTGGATCGACGGCTGCCGAGAATTGATCCAGAATGCCGCCGAAGCCGCG
C3              TGTGGATCGACGGCTGCCGAGAATTGATCCAGAATGCCGCCGAAGCCGCG
C4              TGTGGATCGACGGCTGCCGAGAATTGATCCAGAATGCCGCCGAAGCCGCG
C5              TGTGGATCGACGGCTGCCGAGAATTGATCCAGAATGCCGCCGAAGCCGCG
C6              TGTGGATCGACGGCTGCCGAGAATTGATCCAGAATGCCGCCGAAGCCGCG
                **************************************************

C1              AACGGTACACAGACCCTAATGCGGCCGCGGATCGAGGGAGCAAGCGGAAC
C2              AACGGTACACAGACCCTAATGCGGCCGCGGATCGAGGGAGCAAGCGGAAC
C3              AACGGTACACAGACCCTAATGCGGCCGCGGATCGAGGGAGCAAGCGGAAC
C4              AACGGTACACAGACCCTAATGCGGCCGCGGATCGAGGGAGCAAGCGGAAC
C5              AACGGTACACAGACCCTAATGCGGCCGCGGATCGAGGGAGCAAGCGGAAC
C6              AACGGTACACAGACCCTAATGCGGCCGCGGATCGAGGGAGCAAGCGGAAC
                **************************************************

C1              CGCAAACCACCTCGAGCCGATCGACATCTCCGGCGTCTGGCCGGTGAAGA
C2              CGCAAACCACCTCGAGCCGATCGACATCTCCGGCGTCTGGCCGGTGAAGA
C3              CGCAAACCACCTCGAGCCGATCGACATCTCCGGCGTCTGGCCGGTGAAGA
C4              CGCAAACCACCTCGAGCCGATCGACATCTCCGGCGTCTGGCCGGTGAAGA
C5              CGCAAACCACCTCGAGCCGATCGACATCTCCGGCGTCTGGCCGGTGAAGA
C6              CGCAAACCACCTCGAGCCGATCGACATCTCCGGCGTCTGGCCGGTGAAGA
                **************************************************

C1              CCGTGTACGAAGCAGTATCCGAAGCGCTCGGAGAATGTGTCGACACCAGC
C2              CCGTGTACGAAGCAGTATCCGAAGCGCTCGGAGAATGTGTCGACACCAGC
C3              CCGTGTACGAAGCAGTATCCGAAGCGCTCGGAGAATGTGTCGACACCAGC
C4              CCGTGTACGAAGCAGTATCCGAAGCGCTCGGAGAATGTGTCGACACCAGC
C5              CCGTGTACGAAGCAGTATCCGAAGCGCTCGGAGAATGTGTCGACACCAGC
C6              CCGTGTACGAAGCAGTATCCGAAGCGCTCGGAGAATGTGTCGACACCAGC
                **************************************************

C1              ACTGAGTTGGCCACTCTGCGTAAATTGTCCGACGCCGCACACATACCTTA
C2              ACTGAGTTGGCCACTCTGCGTAAATTGTCCGACGCCGCACACATACCTTA
C3              ACTGAGTTGGCCACTCTGCGTAAATTGTCCGACGCCGCACACATACCTTA
C4              ACTGAGTTGGCCACTCTGCGTAAATTGTCCGACGCCGCACACATACCTTA
C5              ACTGAGTTGGCCACTCTGCGTAAATTGTCCGACGCCGCACACATACCTTA
C6              ACTGAGTTGGCCACTCTGCGTAAATTGTCCGACGCCGCACACATACCTTA
                **************************************************

C1              TTGGCCACACTGGGATACTGGTGCGGTGGTTCTGAAGCTCTATGAGCACC
C2              TTGGCCACACTGGGATACTGGTGCGGTGGTTCTGAAGCTCTATGAGCACC
C3              TTGGCCACACTGGGATACTGGTGCGGTGGTTCTGAAGCTCTATGAGCACC
C4              TTGGCCACACTGGGATACTGGTGCGGTGGTTCTGAAGCTCTATGAGCACC
C5              TTGGCCACACTGGGATACTGGTGCGGTGGTTCTGAAGCTCTATGAGCACC
C6              TTGGCCACACTGGGATACTGGTGCGGTGGTTCTGAAGCTCTATGAGCACC
                **************************************************

C1              TGGTTGAGAACCGAACCGATCAACCGACATTCTACATCGACTTTCCAACG
C2              TGGTTGAGAACCGAACCGATCAACCGACATTCTACATCGACTTTCCAACG
C3              TGGTTGAGAACCGAACCGATCAACCGACATTCTACATCGACTTTCCAACG
C4              TGGTTGAGAACCGAACCGATCAACCGACATTCTACATCGACTTTCCAACG
C5              TGGTTGAGAACCGAACCGATCAACCGACATTCTACATCGACTTTCCAACG
C6              TGGTTGAGAACCGAACCGATCAACCGACATTCTACATCGACTTTCCAACG
                **************************************************

C1              TCCGTGTCACCGTTAACCCGGCCACATAGAAGTAAGCCCGGTGTCGCCGA
C2              TCCGTGTCACCGTTAACCCGGCCACATAGAAGTAAGCCCGGTGTCGCCGA
C3              TCCGTGTCACCGTTAACCCGGCCACATAGAAGTAAGCCCGGTGTCGCCGA
C4              TCCGTGTCACCGTTAACCCGGCCACATAGAAGTAAGCCCGGTGTCGCCGA
C5              TCCGTGTCACCGTTAACCCGGCCACATAGAAGTAAGCCCGGTGTCGCCGA
C6              TCCGTGTCACCGTTAACCCGGCCACATAGAAGTAAGCCCGGTGTCGCCGA
                **************************************************

C1              GCGATGGGACCTGGTGGCGTGGGGTATAGAATTAGGTACCGCCTACAGCG
C2              GCGATGGGACCTGGTGGCGTGGGGTATAGAATTAGGTACCGCCTACAGCG
C3              GCGATGGGACCTGGTGGCGTGGGGTATAGAATTAGGTACCGCCTACAGCG
C4              GCGATGGGACCTGGTGGCGTGGGGTATAGAATTAGGTACCGCCTACAGCG
C5              GCGATGGGACCTGGTGGCGTGGGGTATAGAATTAGGTACCGCCTACAGCG
C6              GCGATGGGACCTGGTGGCGTGGGGTATAGAATTAGGTACCGCCTACAGCG
                **************************************************

C1              AACTAACCGACCCGGTAGAGCAGCGGCGTCGTCTGCACGAACAGTCCTTA
C2              AACTAACCGACCCGGTAGAGCAGCGGCGTCGTCTGCACGAACAGTCCTTA
C3              AACTAACCGACCCGGTAGAGCAGCGGCGTCGTCTGCACGAACAGTCCTTA
C4              AACTAACCGACCCGGTAGAGCAGCGGCGTCGTCTGCACGAACAGTCCTTA
C5              AACTAACCGACCCGGTAGAGCAGCGGCGTCGTCTGCACGAACAGTCCTTA
C6              AACTAACCGACCCGGTAGAGCAGCGGCGTCGTCTGCACGAACAGTCCTTA
                **************************************************

C1              TTGGCCGTCGGCGGAAACCCCGAAGCGATGGAGCTCGACGAAGACTTCCT
C2              TTGGCCGTCGGCGGAAACCCCGAAGCGATGGAGCTCGACGAAGACTTCCT
C3              TTGGCCGTCGGCGGAAACCCCGAAGCGATGGAGCTCGACGAAGACTTCCT
C4              TTGGCCGTCGGCGGAAACCCCGAAGCGATGGAGCTCGACGAAGACTTCCT
C5              TTGGCCGTCGGCGGAAACCCCGAAGCGATGGAGCTCGACGAAGACTTCCT
C6              TTGGCCGTCGGCGGAAACCCCGAAGCGATGGAGCTCGACGAAGACTTCCT
                **************************************************

C1              ACAAGCCATGGAATACGCTATGCCACCGACCGGCGGCCTGGGAATGGGCA
C2              ACAAGCCATGGAATACGCTATGCCACCGACCGGCGGCCTGGGAATGGGCA
C3              ACAAGCCATGGAATACGCTATGCCACCGACCGGCGGCCTGGGAATGGGCA
C4              ACAAGCCATGGAATACGCTATGCCACCGACCGGCGGCCTGGGAATGGGCA
C5              ACAAGCCATGGAATACGCTATGCCACCGACCGGCGGCCTGGGAATGGGCA
C6              ACAAGCCATGGAATACGCTATGCCACCGACCGGCGGCCTGGGAATGGGCA
                **************************************************

C1              TAGACCGTCTCGTGATGTTAATCACCGGCCGCAGCATTCGCGAAACGCTA
C2              TAGACCGTCTCGTGATGTTAATCACCGGCCGCAGCATTCGCGAAACGCTA
C3              TAGACCGTCTCGTGATGTTAATCACCGGCCGCAGCATTCGCGAAACGCTA
C4              TAGACCGTCTCGTGATGTTAATCACCGGCCGCAGCATTCGCGAAACGCTA
C5              TAGACCGTCTCGTGATGTTAATCACCGGCCGCAGCATTCGCGAAACGCTA
C6              TAGACCGTCTCGTGATGTTAATCACCGGCCGCAGCATTCGCGAAACGCTA
                **************************************************

C1              CCGTTCCCACTGGCCAAGCCGCAC--------------------------
C2              CCGTTCCCACTGGCCAAGCCGCAC--------------------------
C3              CCGTTCCCACTGGCCAAGCCGCAC--------------------------
C4              CCGTTCCCACTGGCCAAGCCGCAC--------------------------
C5              CCGTTCCCACTGGCCAAGCCGCAC--------------------------
C6              CCGTTCCCACTGGCCAAGCCGCAC--------------------------
                ************************                          

C1              --------------------------------------------------
C2              --------------------------------------------------
C3              --------------------------------------------------
C4              --------------------------------------------------
C5              --------------------------------------------------
C6              --------------------------------------------------
                                                                  

C1              --------------------------------------------------
C2              --------------------------------------------------
C3              --------------------------------------------------
C4              --------------------------------------------------
C5              --------------------------------------------------
C6              --------------------------------------------------
                                                                  

C1              --------------------------------------------------
C2              --------------------------------------------------
C3              --------------------------------------------------
C4              --------------------------------------------------
C5              --------------------------------------------------
C6              --------------------------------------------------
                                                                  

C1              -------------------------------
C2              -------------------------------
C3              -------------------------------
C4              -------------------------------
C5              -------------------------------
C6              -------------------------------
                                               



>C1
ATTTGTTCGGGGCCTTGTTCTGGCAGCCGGTCGCACTCCCGCTATCACTG
GGTACCGGCAGCAGCCGGCTGGACCGTCGGTGTAATCGCCACACTGTCAC
TGATAGCAAGTGTGTCACCGTTGATCAGGTGGCTCATTAGGGTCCCACGT
GAATTCATCAACAACTACCTTTTTAATTTTCCGGACACCAGCATCGCCTG
GTCGTTCGTGCTGGCGCTGTTAGCCGCCGCGCTAACCACGCGCAAACGCA
TCGCCTGGCTGCTGTTGCTCGGCAATATGGTGCTCGCCGCCGTGTTAAAC
GCTGTGGATATGGCAGCGAATGGCAACACCCCAGCCGAGACATTCGGCGA
AAACCTCGGGTTCGCAGTGCATGTTGTTGCGATCTTGCTGCTGGTTTTGA
GCTATCGGGAATTCTGGGCCAAAGTCCGCCGAGGCGCGCTGTTCAAAGCG
GCTGCGGTGCTGGTTGCCGGAGACGTGATCGGGATACTGTTGTCTTTGGG
CCTGGTCGAGCTGTTCCCCGGATCGCTAGCGCGGCAGGATCGCCTGCCGT
ATGTGGCCAATCGGGTGGTCGGATTCGCACTTGCCGATCCCGACCTCTTC
AGCGGCAAACCGCACGTCTTACTCAACGCAATCTTCGGCTTGTTCGGCGC
CCTCGCGTTGATCATGGCCACTATCGTGCTGTTTCAGTCCCAGCGTGCAG
ATAACGCCCTGACCGGCGAGGATGAGTCCGCCATCCGCGGGCTACTTGAG
CTGTATGGCAAGAACGACTCACTGGGTTACTTCGCCACCCGGCGCGATAA
GTCGGTGATCTTCGCGCACAATGGCCGCGCGGCCATAACCTATCGAGTTG
AGATAGGAGTCTGCCTAGCCAGCGGCGACCCAGTAGGCGATCCCGGGGCA
TGGCCGCAGGCCGTCGATGCGTGGTTAGAGCTTTGCCAGACGTACGGTTG
GGCGCCCGGTGTGATGGGGGCCAGTTCACAGGGGGCCCAGGTATTTCGTA
GGGCCGGCTTCAACGCCATAGAACTCGGCGACGAGGCGATCTTGCGGACT
GCCGTTTACAAACTTTCCGGCCCCGACATGCGCGGAGTGCGCCAGGCGGT
GACACGGGCACGCCGGGCCGGACTGACCGTACGCATTAGACGGCACAGCG
ACATCTCCGCCAACGAGATGGCAGACACCATCGCGCGTGCTGACGCCTGG
CGCGACACCGAATTCGAACGTGGCTTTTCGATGGCGCTGGGCCGGCTCGG
CGATCCGGCTGATTCAGATTGCCTGCTGGTCGAAGCAGTGGACCGCGACG
ACCATGTCGTTGCGATACTGTCACTGGTCCCGTGGGGAACCACCGGCGTC
TCGTTGGACGTGATGCGCCGTTCTCCACAATCACCCAACGGCACCATCGA
ACTCATGGTCAGCGAGCTAGCCCTCAAGGGCGAGACTCTTGGGATCGCCC
GCATTTCGTTGAATTTTACGATGTTTCGCGCCGCGTTCGAGCAAGGTGCT
CAACTCGGCGCTGGCCCAATTGCACGGTTGTGGCGGGGGCTGCTGTTGTT
TTTCTCACGGTGGTGGCAGTTGGAGACGCTGTACCGCTCGAACATAAAAT
ACCTTCCTGACTGGGTCCCTCGTTACGCCTGCTACGAGGACGCCCGGTTG
ATTCCGCGGGTGGGGGTTGCCTCGGTGATCGCCGAGGGTTTCCTTGTGTT
ACCGTTCAGCCGACGCGGCCGGGTGCACACCGGCCATCATCCGGCTGTGC
CAGCGCGGTTAGCAGAATCCGGGCTGCTGCACCACGATGGGTCGACTCCA
GATGTCAGCGGATTGCAAACGGCGGACGTCGATTTGGAAGTAGCGAATTC
CCGTATACCCGAACAGGTACGGGTGCGTCTGGCAAAACTTAAGACATTGC
AACTCAACGGTATTGACGCTTATCCGGTGGGACACCCGCCTAGCCACACA
GTCGCCCAGGCTCTGGATGCCGACGACGAAGGCACCGTCTCGATATCTGG
ACGCATATTGCGGATACGTGACTATGGCGGCGTGTTGTTTGCTCATGTGC
GTGACTGGTCGGGCGAAATACAAGTGCTGCTGGATAATTTAGTGCTGGAG
TGCTGCTGCATCGCAGATTTCACCGCAGCCATTGATCTGGGCGATATAGT
CGAAATGACCGGGAACATGGGCTTCAGCAAAAACGGGACTCGCTCGTTGA
TAGTACGCAACTGGCGGCTGATCGGTAAATGCTTACGGCCGCTACCGAAC
AAATGGAAGGGGTTAACCGACCCAGAAGCCCGGGTGCGAACCCGTTATGT
CGATCTGGCAGTCAATACCGAGTCCCGTAACCTGATCATGGCTCGCAGCT
GCGTGTTGCGCTCGGTCAGGGAGATGCTGTTCGCTAAAGGATTTGTCGAA
GTCGAGACCCCAATCCTGCAACAAATTCACGGCGGCGCCACTGCCCGGCC
ATTCGCCACTCGCATCAATACCTATGACATGGATCTGTTCCTACGCATTG
CCCCGGAGCTCTATCTTAAGAGGCTGTGCATCGGGGGTGTAGAGCGGGTC
TTCGAGCTGGGCCGGGCCTTCCGTAACGAGGGAGTAGACTTTAGTCACAA
TCCGGAGTTCACCTTGCTGGAGGCCTACCAGGCGCACGCAGACTACCTAA
TGTGGATCGACGGCTGCCGAGAATTGATCCAGAATGCCGCCGAAGCCGCG
AACGGTACACAGACCCTAATGCGGCCGCGGATCGAGGGAGCAAGCGGAAC
CGCAAACCACCTCGAGCCGATCGACATCTCCGGCGTCTGGCCGGTGAAGA
CCGTGTACGAAGCAGTATCCGAAGCGCTCGGAGAATGTGTCGACACCAGC
ACTGAGTTGGCCACTCTGCGTAAATTGTCCGACGCCGCACACATACCTTA
TTGGCCACACTGGGATACTGGTGCGGTGGTTCTGAAGCTCTATGAGCACC
TGGTTGAGAACCGAACCGATCAACCGACATTCTACATCGACTTTCCAACG
TCCGTGTCACCGTTAACCCGGCCACATAGAAGTAAGCCCGGTGTCGCCGA
GCGATGGGACCTGGTGGCGTGGGGTATAGAATTAGGTACCGCCTACAGCG
AACTAACCGACCCGGTAGAGCAGCGGCGTCGTCTGCACGAACAGTCCTTA
TTGGCCGTCGGCGGAAACCCCGAAGCGATGGAGCTCGACGAAGACTTCCT
ACAAGCCATGGAATACGCTATGCCACCGACCGGCGGCCTGGGAATGGGCA
TAGACCGTCTCGTGATGTTAATCACCGGCCGCAGCATTCGCGAAACGCTA
CCGTTCCCACTGGCCAAGCCGCAC--------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
-------------------------------
>C2
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
-------GTGCTGGCGCTGTTAGCCGCCGCGCTAACCACGCGCAAACGCA
TCGCCTGGCTGCTGTTGCTCGGCAATATGGTGCTCGCCGCCGTGTTAAAC
GCTGTGGATATGGCAGCGAATGGCAACACCCCAGCCGAGACATTCGGCGA
AAACCTCGGGTTCGCAGTGCATGTTGTTGCGATCTTGCTGCTGGTTTTGA
GCTATCGGGAATTCTGGGCCAAAGTCCGCCGAGGCGCGCTGTTCAAAGCG
GCTGCGGTGCTGGTTGCCGGAGACGTGATCGGGATACTGTTGTCTTTGGG
CCTGGTCGAGCTGTTCCCCGGATCGCTAGCGCGGCAGGATCGCCTGCCGT
ATGTGGCCAATCGGGTGGTCGGATTCGCACTTGCCGATCCCGACCTCTTC
AGCGGCAAACCGCACGTCTTACTCAACGCAATCTTCGGCTTGTTCGGCGC
CCTCGCGTTGATCATGGCCACTATCGTGCTGTTTCAGTCCCAGCGTGCAG
ATAACGCCCTGACCGGCGAGGATGAGTCCGCCATCCGCGGGCTACTTGAG
CTGTATGGCAAGAACGACTCACTGGGTTACTTCGCCACCCGGCGCGATAA
GTCGGTGATCTTCGCGCACAATGGCCGCGCGGCCATAACCTATCGAGTTG
AGATAGGAGTCTGCCTAGCCAGCGGCGACCCAGTAGGCGATCCCGGGGCA
TGGCCGCAGGCCGTCGATGCGTGGTTAGAGCTTTGCCAGACGTACGGTTG
GGCGCCCGGTGTGATGGGGGCCAGTTCACAGGGGGCCCAGGTATTTCGTA
GGGCCGGCTTCAACGCCATAGAACTCGGCGACGAGGCGATCTTGCGGACT
GCCGTTTACAAACTTTCCGGCCCCGACATGCGCGGAGTGCGCCAGGCGGT
GACACGGGCACGCCGGGCCGGACTGACCGTACGCATTAGACGGCACAGCG
ACATCTCCGCCAACGAGATGGCAGACACCATCGCGCGTGCTGACGCCTGG
CGCGACACCGAATTCGAACGTGGCTTTTCGATGGCGCTGGGCCGGCTCGG
CGATCCGGCTGATTCAGATTGCCTGCTGGTCGAAGCAGTGGACCGCGACG
ACCATGTCGTTGCGATACTGTCACTGGTCCCGTGGGGAACCACCGGCGTC
TCGTTGGACGTGATGCGCCGTTCTCCACAATCACCCAACGGCACCATCGA
ACTCATGGTCAGCGAGCTAGCCCTCAAGGGCGAGACTCTTGGGATCGCCC
GCATTTCGTTGAATTTTACGATGTTTCGCGCCGCGTTCGAGCAAGGTGCT
CAACTCGGCGCTGGCCCAATTGCACGGTTGTGGCGGGGGCTGCTGTTGTT
TTTCTCACGGTGGTGGCAGTTGGAGACGCTGTACCGCTCGAACATAAAAT
ACCTTCCTGACTGGGTCCCTCGTTACGCCTGCTACGAGGACGCCCGGTTG
ATTCCGCGGGTGGGGGTTGCCTCGGTGATCGCCGAGGGTTTCCTTGTGTT
ACCGTTCAGCCGACGCGGCCGGGTGCACACCGGCCATCATCCGGCTGTGC
CAGCGCGGTTAGCAGAATCCGGGCTGCTGCACCACGATGGGTCGACTCCA
GATGTCAGCGGATTGCAAACGGCGGACGTCGATTTGGAAGTAGCGAATTC
CCGTATACCCGAACAGGTACGGGTGCGTCTGGCAAAACTTAAGACATTGC
AACTCAACGGTATTGACGCTTATCCGGTGGGACACCCGCCTAGCCACACA
GTCGCCCAGGCTCTGGATGCCGACGACGAAGGCACCGTCTCGATATCTGG
ACGCATATTGCGGATACGTGACTATGGCGGCGTGTTGTTTGCTCATGTGC
GTGACTGGTCGGGCGAAATACAAGTGCTGCTGGATAATTTAGTGCTGGAG
TGCTGCTGCATCGCAGATTTCACCGCAGCCATTGATCTGGGCGATATAGT
CGAAATGACCGGGAACATGGGCTTCAGCAAAAACGGGACTCGCTCGTTGA
TAGTACGCAACTGGCGGCTGATCGGTAAATGCTTACGGCCGCTACCGAAC
AAATGGAAGGGGTTAACCGACCCAGAAGCCCGGGTGCGAACCCGTTATGT
CGATCTGGCAGTCAATACCGAGTCCCGTAACCTGATCATGGCTCGCAGCT
GCGTGTTGCGCTCGGTCAGGGAGATGCTGTTCGCTAAAGGATTTGTCGAA
GTCGAGACCCCAATCCTGCAACAAATTCACGGCGGCGCCACTGCCCGGCC
ATTCGCCACTCGCATCAATACCTATGACATGGATCTGTTCCTACGCATTG
CCCCGGAGCTCTATCTTAAGAGGCTGTGCATCGGGGGTGTAGAGCGGGTC
TTCGAGCTGGGCCGGGCCTTCCGTAACGAGGGAGTAGACTTTAGTCACAA
TCCGGAGTTCACCTTGCTGGAGGCCTACCAGGCGCACGCAGACTACCTAA
TGTGGATCGACGGCTGCCGAGAATTGATCCAGAATGCCGCCGAAGCCGCG
AACGGTACACAGACCCTAATGCGGCCGCGGATCGAGGGAGCAAGCGGAAC
CGCAAACCACCTCGAGCCGATCGACATCTCCGGCGTCTGGCCGGTGAAGA
CCGTGTACGAAGCAGTATCCGAAGCGCTCGGAGAATGTGTCGACACCAGC
ACTGAGTTGGCCACTCTGCGTAAATTGTCCGACGCCGCACACATACCTTA
TTGGCCACACTGGGATACTGGTGCGGTGGTTCTGAAGCTCTATGAGCACC
TGGTTGAGAACCGAACCGATCAACCGACATTCTACATCGACTTTCCAACG
TCCGTGTCACCGTTAACCCGGCCACATAGAAGTAAGCCCGGTGTCGCCGA
GCGATGGGACCTGGTGGCGTGGGGTATAGAATTAGGTACCGCCTACAGCG
AACTAACCGACCCGGTAGAGCAGCGGCGTCGTCTGCACGAACAGTCCTTA
TTGGCCGTCGGCGGAAACCCCGAAGCGATGGAGCTCGACGAAGACTTCCT
ACAAGCCATGGAATACGCTATGCCACCGACCGGCGGCCTGGGAATGGGCA
TAGACCGTCTCGTGATGTTAATCACCGGCCGCAGCATTCGCGAAACGCTA
CCGTTCCCACTGGCCAAGCCGCAC--------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
-------------------------------
>C3
ATTTGTTCGGGGCCTTGTTCTGGCAGCCGGTCGCACTCCCGCTATCACTG
GGTACCGGCAGCAGCCGGCTGGACCGTCGGTGTAATCGCCACACTGTCAC
TGATAGCAAGTGTGTCACCGTTGATCAGGTGGCTCATTAGGGTCCCACGT
GAATTCATCAACAACTACCTTTTTAATTTTCCGGACACCAGCATCGCCTG
GTCGTTCGTGCTGGCGCTGTTAGCCGCCGCGCTAACCACGCGCAAACGCA
TCGCCTGGCTGCTGTTGCTCGGCAATATGGTGCTCGCCGCCGTGTTAAAC
GCTGTGGATATGGCAGCGAATGGCAACACCCCAGCCGAGACATTCGGCGA
AAACCTCGGGTTCGCAGTGCATGTTGTTGCGATCTTGCTGCTGGTTTTGA
GCTATCGGGAATTCTGGGCCAAAGTCCGCCGAGGCGCGCTGTTCAAAGCG
GCTGCGGTGCTGGTTGCCGGAGACGTGATCGGGATACTGTTGTCTTTGGG
CCTGGTCGAGCTGTTCCCCGGATCGCTAGCGCGGCAGGATCGCCTGCCGT
ATGTGGCCAATCGGGTGGTCGGATTCGCACTTGCCGATCCCGACCTCTTC
AGCGGCAAACCGCACGTCTTACTCAACGCAATCTTCGGCTTGTTCGGCGC
CCTCGCGTTGATCATGGCCACTATCGTGCTGTTTCAGTCCCAGCGTGCAG
ATAACGCCCTGACCGGCGAGGATGAGTCCGCCATCCGCGGGCTACTTGAG
CTGTATGGCAAGAACGACTCACTGGGTTACTTCGCCACCCGGCGCGATAA
GTCGGTGATCTTCGCGCACAATGGCCGCGCGGCCATAACCTATCGAGTTG
AGATAGGAGTCTGCCTAGCCAGCGGCGACCCAGTAGGCGATCCCGGGGCA
TGGCCGCAGGCCGTCGATGCGTGGTTAGAGCTTTGCCAGACGTACGGTTG
GGCGCCCGGTGTGATGGGGGCCAGTTCACAGGGGGCCCAGGTATTTCGTA
GGGCCGGCTTCAACGCCATAGAACTCGGCGACGAGGCGATCTTGCGGACT
GCCGTTTACAAACTTTCCGGCCCCGACATGCGCGGAGTGCGCCAGGCGGT
GACACGGGCACGCCGGGCCGGACTGACCGTACGCATTAGACGGCACAGCG
ACATCTCCGCCAACGAGATGGCAGACACCATCGCGCGTGCTGACGCCTGG
CGCGACACCGAATTCGAACGTGGCTTTTCGATGGCGCTGGGCCGGCTCGG
CGATCCGGCTGATTCAGATTGCCTGCTGGTCGAAGCAGTGGACCGCGACG
ACCATGTCGTTGCGATACTGTCACTGGTCCCGTGGGGAACCACCGGCGTC
TCGTTGGACGTGATGCGCCGTTCTCCACAATCACCCAACGGCACCATCGA
ACTCATGGTCAGCGAGCTAGCCCTCAAGGGCGAGACTCTTGGGATCGCCC
GCATTTCGTTGAATTTTACGATGTTTCGCGCCGCGTTCGAGCAAGGTGCT
CAACTCGGCGCTGGCCCAATTGCACGGTTGTGGCGGGGGCTGCTGTTGTT
TTTCTCACGGTGGTGGCAGTTGGAGACGCTGTACCGCTCGAACATAAAAT
ACCTTCCTGACTGGGTCCCTCGTTACGCCTGCTACGAGGACGCCCGGTTG
ATTCCGCGGGTGGGGGTTGCCTCGGTGATCGCCGAGGGTTTCCTTGTGTT
ACCGTTCAGCCGACGCGGCCGGGTGCACACCGGCCATCATCCGGCTGTGC
CAGCGCGGTTAGCAGAATCCGGGCTGCTGCACCACGATGGGTCGACTCCA
GATGTCAGCGGATTGCAAACGGCGGACGTCGATTTGGAAGTAGCGAATTC
CCGTATACCCGAACAGGTACGGGTGCGTCTGGCAAAACTTAAGACATTGC
AACTCAACGGTATTGACGCTTATCCGGTGGGACACCCGCCTAGCCACACA
GTCGCCCAGGCTCTGGATGCCGACGACGAAGGCACCGTCTCGATATCTGG
ACGCATATTGCGGATACGTGACTATGGCGGCGTGTTGTTTGCTCATGTGC
GTGACTGGTCGGGCGAAATACAAGTGCTGCTGGATAATTTAGTGCTGGAG
TGCTGCTGCATCGCAGATTTCACCGCAGCCATTGATCTGGGCGATATAGT
CGAAATGACCGGGAACATGGGCTTCAGCAAAAACGGGACTCGCTCGTTGA
TAGTACGCAACTGGCGGCTGATCGGTAAATGCTTACGGCCGCTACCGAAC
AAATGGAAGGGGTTAACCGACCCAGAAGCCCGGGTGCGAACCCGTTATGT
CGATCTGGCAGTCAATACCGAGTCCCGTAACCTGATCATGGCTCGCAGCT
GCGTGTTGCGCTCGGTCAGGGAGATGCTGTTCGCTAAAGGATTTGTCGAA
GTCGAGACCCCAATCCTGCAACAAATTCACGGCGGCGCCACTGCCCGGCC
ATTCGCCACTCGCATCAATACCTATGACATGGATCTGTTCCTACGCATTG
CCCCGGAGCTCTATCTTAAGAGGCTGTGCATCGGGGGTGTAGAGCGGGTC
TTCGAGCTGGGCCGGGCCTTCCGTAACGAGGGAGTAGACTTTAGTCACAA
TCCGGAGTTCACCTTGCTGGAGGCCTACCAGGCGCACGCAGACTACCTAA
TGTGGATCGACGGCTGCCGAGAATTGATCCAGAATGCCGCCGAAGCCGCG
AACGGTACACAGACCCTAATGCGGCCGCGGATCGAGGGAGCAAGCGGAAC
CGCAAACCACCTCGAGCCGATCGACATCTCCGGCGTCTGGCCGGTGAAGA
CCGTGTACGAAGCAGTATCCGAAGCGCTCGGAGAATGTGTCGACACCAGC
ACTGAGTTGGCCACTCTGCGTAAATTGTCCGACGCCGCACACATACCTTA
TTGGCCACACTGGGATACTGGTGCGGTGGTTCTGAAGCTCTATGAGCACC
TGGTTGAGAACCGAACCGATCAACCGACATTCTACATCGACTTTCCAACG
TCCGTGTCACCGTTAACCCGGCCACATAGAAGTAAGCCCGGTGTCGCCGA
GCGATGGGACCTGGTGGCGTGGGGTATAGAATTAGGTACCGCCTACAGCG
AACTAACCGACCCGGTAGAGCAGCGGCGTCGTCTGCACGAACAGTCCTTA
TTGGCCGTCGGCGGAAACCCCGAAGCGATGGAGCTCGACGAAGACTTCCT
ACAAGCCATGGAATACGCTATGCCACCGACCGGCGGCCTGGGAATGGGCA
TAGACCGTCTCGTGATGTTAATCACCGGCCGCAGCATTCGCGAAACGCTA
CCGTTCCCACTGGCCAAGCCGCAC--------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
-------------------------------
>C4
ATTTGTTCGGGGCCTTGTTCTGGCAGCCGGTCGCACTCCCGCTATCACTG
GGTACCGGCAGCAGCCGGCTGGACCGTCGGTGTAATCGCCACACTGTCAC
TGATAGCAAGTGTGTCACCGTTGATCAGGTGGCTCATTAGGGTCCCACGT
GAATTCATCAACAACTACCTTTTTAATTTTCCGGACACCAGCATCGCCTG
GTCGTTCGTGCTGGCGCTGTTAGCCGCCGCGCTAACCACGCGCAAACGCA
TCGCCTGGCTGCTGTTGCTCGGCAATATGGTGCTCGCCGCCGTGTTAAAC
GCTGTGGATATGGCAGCGAATGGCAACACCCCAGCCGAGACATTCGGCGA
AAACCTCGGGTTCGCAGTGCATGTTGTTGCGATCTTGCTGCTGGTTTTGA
GCTATCGGGAATTCTGGGCCAAAGTCCGCCGAGGCGCGCTGTTCAAAGCG
GCTGCGGTGCTGGTTGCCGGAGACGTGATCGGGATACTGTTGTCTTTGGG
CCTGGTCGAGCTGTTCCCCGGATCGCTAGCGCGGCAGGATCGCCTGCCGT
ATGTGGCCAATCGGGTGGTCGGATTCGCACTTGCCGATCCCGACCTCTTC
AGCGGCAAACCGCACGTCTTACTCAACGCAATCTTCGGCTTGTTCGGCGC
CCTCGCGTTGATCATGGCCACTATCGTGCTGTTTCAGTCCCAGCGTGCAG
ATAACGCCCTGACCGGCGAGGATGAGTCCGCCATCCGCGGGCTACTTGAG
CTGTATGGCAAGAACGACTCACTGGGTTACTTCGCCACCCGGCGCGATAA
GTCGGTGATCTTCGCGCACAATGGCCGCGCGGCCATAACCTATCGAGTTG
AGATAGGAGTCTGCCTAGCCAGCGGCGACCCAGTAGGCGATCCCGGGGCA
TGGCCGCAGGCCGTCGATGCGTGGTTAGAGCTTTGCCAGACGTACGGTTG
GGCGCCCGGTGTGATGGGGGCCAGTTCACAGGGGGCCCAGGTATTTCGTA
GGGCCGGCTTCAACGCCATAGAACTCGGCGACGAGGCGATCTTGCGGACT
GCCGTTTACAAACTTTCCGGCCCCGACATGCGCGGAGTGCGCCAGGCGGT
GACACGGGCACGCCGGGCCGGACTGACCGTACGCATTAGACGGCACAGCG
ACATCTCCGCCAACGAGATGGCAGACACCATCGCGCGTGCTGACGCCTGG
CGCGACACCGAATTCGAACGTGGCTTTTCGATGGCGCTGGGCCGGCTCGG
CGATCCGGCTGATTCAGATTGCCTGCTGGTCGAAGCAGTGGACCGCGACG
ACCATGTCGTTGCGATACTGTCACTGGTCCCGTGGGGAACCACCGGCGTC
TCGTTGGACGTGATGCGCCGTTCTCCACAATCACCCAACGGCACCATCGA
ACTCATGGTCAGCGAGCTAGCCCTCAAGGGCGAGACTCTTGGGATCGCCC
GCATTTCGTTGAATTTTACGATGTTTCGCGCCGCGTTCGAGCAAGGTGCT
CAACTCGGCGCTGGCCCAATTGCACGGTTGTGGCGGGGGCTGCTGTTGTT
TTTCTCACGGTGGTGGCAGTTGGAGACGCTGTACCGCTCGAACATAAAAT
ACCTTCCTGACTGGGTCCCTCGTTACGCCTGCTACGAGGACGCCCGGTTG
ATTCCGCGGGTGGGGGTTGCCTCGGTGATCGCCGAGGGTTTCCTTGTGTT
ACCGTTCAGCCGACGCGGCCGGGTGCACACCGGCCATCATCCGGCTGTGC
CAGCGCGGTTAGCAGAATCCGGGCTGCTGCACCACGATGGGTCGACTCCA
GATGTCAGCGGATTGCAAACGGCGGACGTCGATTTGGAAGTAGCGAATTC
CCGTATACCCGAACAGGTACGGGTGCGTCTGGCAAAACTTAAGACATTGC
AACTCAACGGTATTGACGCTTATCCGGTGGGACACCCGCCTAGCCACACA
GTCGCCCAGGCTCTGGATGCCGACGACGAAGGCACCGTCTCGATATCTGG
ACGCATATTGCGGATACGTGACTATGGCGGCGTGTTGTTTGCTCATGTGC
GTGACTGGTCGGGCGAAATACAAGTGCTGCTGGATAATTTAGTGCTGGAG
TGCTGCTGCATCGCAGATTTCACCGCAGCCATTGATCTGGGCGATATAGT
CGAAATGACCGGGAACATGGGCTTCAGCAAAAACGGGACTCGCTCGTTGA
TAGTACGCAACTGGCGGCTGATCGGTAAATGCTTACGGCCGCTACCGAAC
AAATGGAAGGGGTTAACCGACCCAGAAGCCCGGGTGCGAACCCGTTATGT
CGATCTGGCAGTCAATACCGAGTCCCGTAACCTGATCATGGCTCGCAGCT
GCGTGTTGCGCTCGGTCAGGGAGATGCTGTTCGCTAAAGGATTTGTCGAA
GTCGAGACCCCAATCCTGCAACAAATTCACGGCGGCGCCACTGCCCGGCC
ATTCGCCACTCGCATCAATACCTATGACATGGATCTGTTCCTACGCATTG
CCCCGGAGCTCTATCTTAAGAGGCTGTGCATCGGGGGTGTAGAGCGGGTC
TTCGAGCTGGGCCGGGCCTTCCGTAACGAGGGAGTAGACTTTAGTCACAA
TCCGGAGTTCACCTTGCTGGAGGCCTACCAGGCGCACGCAGACTACCTAA
TGTGGATCGACGGCTGCCGAGAATTGATCCAGAATGCCGCCGAAGCCGCG
AACGGTACACAGACCCTAATGCGGCCGCGGATCGAGGGAGCAAGCGGAAC
CGCAAACCACCTCGAGCCGATCGACATCTCCGGCGTCTGGCCGGTGAAGA
CCGTGTACGAAGCAGTATCCGAAGCGCTCGGAGAATGTGTCGACACCAGC
ACTGAGTTGGCCACTCTGCGTAAATTGTCCGACGCCGCACACATACCTTA
TTGGCCACACTGGGATACTGGTGCGGTGGTTCTGAAGCTCTATGAGCACC
TGGTTGAGAACCGAACCGATCAACCGACATTCTACATCGACTTTCCAACG
TCCGTGTCACCGTTAACCCGGCCACATAGAAGTAAGCCCGGTGTCGCCGA
GCGATGGGACCTGGTGGCGTGGGGTATAGAATTAGGTACCGCCTACAGCG
AACTAACCGACCCGGTAGAGCAGCGGCGTCGTCTGCACGAACAGTCCTTA
TTGGCCGTCGGCGGAAACCCCGAAGCGATGGAGCTCGACGAAGACTTCCT
ACAAGCCATGGAATACGCTATGCCACCGACCGGCGGCCTGGGAATGGGCA
TAGACCGTCTCGTGATGTTAATCACCGGCCGCAGCATTCGCGAAACGCTA
CCGTTCCCACTGGCCAAGCCGCAC--------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
-------------------------------
>C5
ATTTGTTCGGGGCCTTGTTCTGGCAGCCGGTCGCACTCCCGCTATCACTG
GGTACCGGCAGCAGCCGGCTGGACCGTCGGTGTAATCGCCACACTGTCAC
TGATAGCAAGTGTGTCACCGTTGATCAGGTGGCTCATTAGGGTCCCACGT
GAATTCATCAACAACTACCTTTTTAATTTTCCGGACACCAGCATCGCCTG
GTCGTTCGTGCTGGCGCTGTTAGCCGCCGCGCTAACCACGCGCAAACGCA
TCGCCTGGCTGCTGTTGCTCGGCAATATGGTGCTCGCCGCCGTGTTAAAC
GCTGTGGATATGGCAGCGAATGGCAACACCCCAGCCGAGACATTCGGCGA
AAACCTCGGGTTCGCAGTGCATGTTGTTGCGATCTTGCTGCTGGTTTTGA
GCTATCGGGAATTCTGGGCCAAAGTCCGCCGAGGCGCGCTGTTCAAAGCG
GCTGCGGTGCTGGTTGCCGGAGACGTGATCGGGATACTGTTGTCTTTGGG
CCTGGTCGAGCTGTTCCCCGGATCGCTAGCGCGGCAGGATCGCCTGCCGT
ATGTGGCCAATCGGGTGGTCGGATTCGCACTTGCCGATCCCGACCTCTTC
AGCGGCAAACCGCACGTCTTACTCAACGCAATCTTCGGCTTGTTCGGCGC
CCTCGCGTTGATCATGGCCACTATCGTGCTGTTTCAGTCCCAGCGTGCAG
ATAACGCCCTGACCGGCGAGGATGAGTCCGCCATCCGCGGGCTACTTGAG
CTGTATGGCAAGAACGACTCACTGGGTTACTTCGCCACCCGGCGCGATAA
GTCGGTGATCTTCGCGCACAATGGCCGCGCGGCCATAACCTATCGAGTTG
AGATAGGAGTCTGCCTAGCCAGCGGCGACCCAGTAGGCGATCCCGGGGCA
TGGCCGCAGGCCGTCGATGCGTGGTTAGAGCTTTGCCAGACGTACGGTTG
GGCGCCCGGTGTGATGGGGGCCAGTTCACAGGGGGCCCAGGTATTTCGTA
GGGCCGGCTTCAACGCCATAGAACTCGGCGACGAGGCGATCTTGCGGACT
GCCGTTTACAAACTTTCCGGCCCCGACATGCGCGGAGTGCGCCAGGCGGT
GACACGGGCACGCCGGGCCGGACTGACCGTACGCATTAGACGGCACAGCG
ACATCTCCGCCAACGAGATGGCAGACACCATCGCGCGTGCTGACGCCTGG
CGCGACACCGAATTCGAACGTGGCTTTTCGATGGCGCTGGGCCGGCTCGG
CGATCCGGCTGATTCAGATTGCCTGCTGGTCGAAGCAGTGGACCGCGACG
ACCATGTCGTTGCGATACTGTCACTGGTCCCGTGGGGAACCACCGGCGTC
TCGTTGGACGTGATGCGCCGTTCTCCACAATCACCCAACGGCACCATCGA
ACTCATGGTCAGCGAGCTAGCCCTCAAGGGCGAGACTCTTGGGATCGCCC
GCATTTCGTTGAATTTTACGATGTTTCGCGCCGCGTTCGAGCAAGGTGCT
CAACTCGGCGCTGGCCCAATTGCACGGTTGTGGCGGGGGCTGCTGTTGTT
TTTCTCACGGTGGTGGCAGTTGGAGACGCTGTACCGCTCGAACATAAAAT
ACCTTCCTGACTGGGTCCCTCGTTACGCCTGCTACGAGGACGCCCGGTTG
ATTCCGCGGGTGGGGGTTGCCTCGGTGATCGCCGAGGGTTTCCTTGTGTT
ACCGTTCAGCCGACGCGGCCGGGTGCACACCGGCCATCATCCGGCTGTGC
CAGCGCGGTTAGCAGAATCCGGGCTGCTGCACCACGATGGGTCGACTCCA
GATGTCAGCGGATTGCAAACGGCGGACGTCGATTTGGAAGTAGCGAATTC
CCGTATACCCGAACAGGTACGGGTGCGTCTGGCAAAACTTAAGACATTGC
AACTCAACGGTATTGACGCTTATCCGGTGGGACACCCGCCTAGCCACACA
GTCGCCCAGGCTCTGGATGCCGACGACGAAGGCACCGTCTCGATATCTGG
ACGCATATTGCGGATACGTGACTATGGCGGCGTGTTGTTTGCTCATGTGC
GTGACTGGTCGGGCGAAATACAAGTGCTGCTGGATAATTTAGTGCTGGAG
TGCTGCTGCATCGCAGATTTCACCGCAGCCATTGATCTGGGCGATATAGT
CGAAATGACCGGGAACATGGGCTTCAGCAAAAACGGGACTCGCTCGTTGA
TAGTACGCAACTGGCGGCTGATCGGTAAATGCTTACGGCCGCTACCGAAC
AAATGGAAGGGGTTAACCGACCCAGAAGCCCGGGTGCGAACCCGTTATGT
CGATCTGGCAGTCAATACCGAGTCCCGTAACCTGATCATGGCTCGCAGCT
GCGTGTTGCGCTCGGTCAGGGAGATGCTGTTCGCTAAAGGATTTGTCGAA
GTCGAGACCCCAATCCTGCAACAAATTCACGGCGGCGCCACTGCCCGGCC
ATTCGCCACTCGCATCAATACCTATGACATGGATCTGTTCCTACGCATTG
CCCCGGAGCTCTATCTTAAGAGGCTGTGCATCGGGGGTGTAGAGCGGGTC
TTCGAGCTGGGCCGGGCCTTCCGTAACGAGGGAGTAGACTTTAGTCACAA
TCCGGAGTTCACCTTGCTGGAGGCCTACCAGGCGCACGCAGACTACCTAA
TGTGGATCGACGGCTGCCGAGAATTGATCCAGAATGCCGCCGAAGCCGCG
AACGGTACACAGACCCTAATGCGGCCGCGGATCGAGGGAGCAAGCGGAAC
CGCAAACCACCTCGAGCCGATCGACATCTCCGGCGTCTGGCCGGTGAAGA
CCGTGTACGAAGCAGTATCCGAAGCGCTCGGAGAATGTGTCGACACCAGC
ACTGAGTTGGCCACTCTGCGTAAATTGTCCGACGCCGCACACATACCTTA
TTGGCCACACTGGGATACTGGTGCGGTGGTTCTGAAGCTCTATGAGCACC
TGGTTGAGAACCGAACCGATCAACCGACATTCTACATCGACTTTCCAACG
TCCGTGTCACCGTTAACCCGGCCACATAGAAGTAAGCCCGGTGTCGCCGA
GCGATGGGACCTGGTGGCGTGGGGTATAGAATTAGGTACCGCCTACAGCG
AACTAACCGACCCGGTAGAGCAGCGGCGTCGTCTGCACGAACAGTCCTTA
TTGGCCGTCGGCGGAAACCCCGAAGCGATGGAGCTCGACGAAGACTTCCT
ACAAGCCATGGAATACGCTATGCCACCGACCGGCGGCCTGGGAATGGGCA
TAGACCGTCTCGTGATGTTAATCACCGGCCGCAGCATTCGCGAAACGCTA
CCGTTCCCACTGGCCAAGCCGCAC--------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
-------------------------------
>C6
ATTTGTTCGGGGCCTTGTTCTGGCAGCCGGTCGCACTCCCGCTATCACTG
GGTACCGGCAGCAGCCGGCTGGACCGTCGGTGTAATCGCCACACTGTCAC
TGATAGCAAGTGTGTCACCGTTGATCAGGTGGCTCATTAGGGTCCCACGT
GAATTCATCAACAACTACCTTTTTAATTTTCCGGACACCAGCATCGCCTG
GTCGTTCGTGCTGGCGCTGTTAGCCGCCGCGCTAACCACGCGCAAACGCA
TCGCCTGGCTGCTGTTGCTCGGCAATATGGTGCTCGCCGCCGTGTTAAAC
GCTGTGGATATGGCAGCGAATGGCAACACCCCAGCCGAGACATTCGGCGA
AAACCTCGGGTTCGCAGTGCATGTTGTTGCGATCTTGCTGCTGGTTTTGA
GCTATCGGGAATTCTGGGCCAAAGTCCGCCGAGGCGCGCTGTTCAAAGCG
GCTGCGGTGCTGGTTGCCGGAGACGTGATCGGGATACTGTTGTCTTTGGG
CCTGGTCGAGCTGTTCCCCGGATCGCTAGCGCGGCAGGATCGCCTGCCGT
ATGTGGCCAATCGGGTGGTCGGATTCGCACTTGCCGATCCCGACCTCTTC
AGCGGCAAACCGCACGTCTTACTCAACGCAATCTTCGGCTTGTTCGGCGC
CCTCGCGTTGAT