--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Fri Oct 27 15:31:37 WEST 2017 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=MUSCLE tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir=/usr/bin/ input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb tcoffee.bin=t_coffee mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/Ebola_B1_2/VP30/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/Ebola_B1_2/VP30/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/Ebola_B1_2/VP30/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/Ebola_B1_2/VP30/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -4999.55 -5051.81 2 -4998.89 -5053.09 -------------------------------------- TOTAL -4999.17 -5052.64 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/Ebola_B1_2/VP30/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/Ebola_B1_2/VP30/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/Ebola_B1_2/VP30/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 4.865891 0.151193 4.157468 5.656299 4.836413 580.05 582.24 1.000 r(A<->C){all} 0.136508 0.000308 0.103117 0.172093 0.135692 783.20 874.31 1.000 r(A<->G){all} 0.350116 0.000947 0.291112 0.411507 0.349418 524.16 572.08 1.000 r(A<->T){all} 0.042893 0.000114 0.022809 0.064342 0.042517 773.20 781.78 1.000 r(C<->G){all} 0.019763 0.000137 0.000340 0.041485 0.018683 612.50 737.06 1.000 r(C<->T){all} 0.396047 0.000981 0.338035 0.459970 0.395658 537.55 610.14 1.000 r(G<->T){all} 0.054672 0.000171 0.030003 0.080756 0.054082 805.86 832.32 1.000 pi(A){all} 0.325350 0.000130 0.302813 0.346937 0.325656 837.54 979.97 1.000 pi(C){all} 0.215917 0.000098 0.197649 0.236698 0.215862 904.24 1021.04 1.000 pi(G){all} 0.198261 0.000103 0.179903 0.219151 0.197751 757.15 829.27 1.000 pi(T){all} 0.260472 0.000113 0.239152 0.279659 0.260464 1010.09 1034.93 1.000 alpha{1,2} 0.226343 0.000403 0.189318 0.267720 0.224775 1058.10 1138.28 1.000 alpha{3} 4.640804 1.072590 2.640299 6.579942 4.534089 1198.33 1349.67 1.000 pinvar{all} 0.030870 0.000313 0.000258 0.063070 0.028976 1257.52 1379.26 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -4455.78805 Model 2: PositiveSelection -4455.78806 Model 0: one-ratio -4518.58322 Model 3: discrete -4400.880205 Model 7: beta -4401.385939 Model 8: beta&w>1 -4401.383086 Model 0 vs 1 125.59034000000065 Model 2 vs 1 1.9999999494757503E-5 Model 8 vs 7 0.0057059999999182764
>C1 MDSFHERGRSRTIRQSARDGPSHQVRTRSSSRDSHRSEYHTPRSSSQVRV PTVFHRKRTDSLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL LLLIARKTCGSLEQQLNITAPKDTRLANPIADDFQQKDGPKITLLTLLET AEYWSKQDIKGIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLG QDQSESVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFITAFLNIALQLP CESSSVVISGLRLLVPQSEDTETSTYTETRAWSEEGGPH >C2 MDSFHERGRSRTIRQSARDGPSHQVRTRSSSRDSHRSEYHTPRSSSQVRV PTVFHRKRTDFLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL LLLIARKTCGSLEQQLNITAPKDTRLANPIADDFQQKDGPKITLLTLLET AEYWSKQDIKGIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLG QDQSESVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFITAFLNIALQLP CESSSVVISGLRLLVPQSEDTETSTYTETRAWSEEGGPH >C3 MEVVHERGRSRISRQNTRDGPSHLVRARSSSRASYRSEYHTPRSASQIRV PTVFHRKKTDLLTVPPAPKDVCPTLKKGFLCDSNFCKKDHQLESLTDREL LLLIARKTCGSTEQQLSIVAPKDSRLANPIAEDFQQKDGPKVTLSMLIET AEYWSKQDIKNIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLG QDQSESVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFITAFLNIALQLP CESSSVVISGLRMLIPQSEATEVVTPSETCTWSEGGSSH >C4 MEVVHERGRSRISRQNTRDGPSHLVRARSSSRDSYRSEYHTPRSASQIRV PTVFHRKKTDLLTVPPAPKDVCPTLKKGFLCDSNFCKKDHQLESLTDREL LLLIARKTCGSTEQQLSIVAPKDSRLANPIAEDFQQKDGPKVTLSMLIET AEYWSKQDIKNIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLG QDQSESVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFITAFLNIALQLP CESSSVVISGLRMLIPQSEATEVVTPSETCTWSEGGSSH >C5 MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV PTVFHKKGTGALTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG QDQAESVLEVYQRLHSDKGGAFEAALWQQWDRQSLTMFISAFLHVALQLS CESSTVVISGLRLLAPPSVNEGLPPAPGEYTWSEDSTTo >C6 MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG QDQAESVLEVYQRLHSDKGGAFEAALWQQWDRQSLTMFISAFLHVALQLS CESSTVVISGLRLLAPPSVNEGLPPAPGEYTWSEDSTTo >C7 MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV PTVFHKKGTGTLTVPPAPKDVCPTLRKGFLCDSNFCKKDHQLESLTDREL LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG QDQAESVLEVYQRLHSDKGGAFEAALWQQWDRQSLTMFISAFLHVALQLS CESSTVVISGLRLLAPPSVNEGLPPAPGEYTWSEDSTTo >C8 MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG QDQAESVLEVYQRLHSDKGGAFEAALWQQWDRQSLTMFISAFLHVALQLS CESSTVVISGLRLLAPPSVNEGLPPAPGEYTWSEDSTTo >C9 MERGRERGRSRSSRADQQNSTGPQFRTRSISRDKTTTDYRGSRSTSQVRV PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG QDQAESVLEVYQRLHSDKGGAFEAALWQQWDRQSLTMFISAFLHVALQLS CESSTVVISGLRLLAPPSVNEGLPPAPGEYTWSEDSTTo >C10 MERGRERGRSRSSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG QDQAESVLEVYQRLHSDKGGAFEAALWQQWDRQSLTMFISAFLHVALQLS CESSTVVISGLRLLAPPSVNEGLPPAPGEYTWSEDSTTo >C11 MERGRERGRSRSSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG QDQAESVLEVYQRLHSDKGGAFEAALWQQWDRQSLTMFISAFLHVALQLS CESSTVVISGLRLLAPPSVNEGLPPAPGEYTWSEDSTTo >C12 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C13 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C14 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C15 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C16 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C17 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C18 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDRGL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C19 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESAAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C20 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNIAAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C21 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEVGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C22 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C23 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPRITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C24 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C25 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG HDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C26 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C27 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C28 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNQGTCSWSDEGTPo >C29 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C30 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C31 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CEoSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C32 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C33 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C34 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C35 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENHRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C36 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C37 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C38 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C39 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C40 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFKQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFIAAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C41 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENHRGEHRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFKQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo >C42 MEAPYERGRPRAARQHSRDGHDHHGRARSSSRENYRGEYRQSRSASQVRV PTVFHKRRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDDGTPo >C43 MEAPYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKRRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTTEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDDGTPo >C44 MMEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIR VPNLFHRKKTDALIVPPTPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHE LLLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSHGNSPKLTLAVLLQ IAEHWATRDLRQIEDSKLRALLTLCAVLTRKFSKSQLGLLCETHLRHEGL GQDQADSVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFISAFLNIALQI PCESSSVVVSGLATLYPAQDNSTPSEATNDTTWSSTVEo >C45 MEHSRERGRSRNIRHNSREPYENPSRSRSLSRDPNQIDRRQPRSASQIRV PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSNFCKKDHQLDSLNDHEL LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI AEHWATRDLRQIEDSKLRALLTLCAVLTRKFSKSQLSLLCETHLRHEGLG QDQADSVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFISAFLNIALQIP CESSSVVVSGIATLYPAQDNSTPSEATNDTTWSSTVGoo >C46 MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI AEHWATRDLRQIEDSKLRALLTLCAVLTRKFSKSQLGLLCETHLRHEGLG QDQADSVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFISAFLNIALQTP CESSSVVVSGLATLYPAQDNSTLSEATNDTTWSSTVEoo >C47 MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI AEHWATRDLRQIEDSKLRALLTLCAVLTRKFSKSQLGLLCETHLRHEGLG QDQADSVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFISAFLNIALQTP CESSSVVVSGLATLYPAQDNSTPSEATNDTTWSSTVEoo >C48 MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI AEHWATRDLRQIEDSKLRALLTLCAVLTRKFSKSQLGLLCETHLRHEGLG QDQADSVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFISAFLNIALQTP CESSSVVVSGLATLYPAQDNSTPSEATNDTTWSSTVEoo >C49 MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI AEHWATRDLRQIEDSKLRALLTLCAVLTRKFSKSQLGLLCETHLRHEGLG QDQADSVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFISAFLNIALQIP CESSSVVVSGLATLYPAQDNSTPSEATNDTTWSSTVEoo >C50 MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSQFCKKDHQLDSLNDHEL LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLGVLLQI AEHWATRDLRQIEDSKLRALLTLCAVLTRKFSKSQLGLLCETHLRHEGLG QDQADSVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFISAFLNIALQTP CESSSVVVSGLATLYPTQDNSKPSEATNDTTWSSTVEoo >C51 MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV PNLFHRKKTDTLIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI AEHWATRDLRQIEDSKLRALLTLCAVLTRKFSKSQLGLLCETHLRHEGLG QDQADSVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFISAFLNIALQTP CESSSVVVSGLATLYPAQDNSTPSEATNDTToooooooo >C52 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP CESSAVVVSGLRTLVPQSDNEEASTNPGTCSoooooooo PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:09 - Revision 1613 - Build 432) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] input.prot.fasta.muscle_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [785526] Library Relaxation: Multi_proc [8] [Relax Library][TOT= 6][ 0 %][ELAPSED TIME: 0 sec.] [Relax Library][TOT= 6][ 33 %][ELAPSED TIME: 0 sec.] [Relax Library][TOT= 6][ 50 %][ELAPSED TIME: 0 sec.] [Relax Library][TOT= 6][ 66 %][ELAPSED TIME: 0 sec.] [Relax Library][TOT= 6][ 83 %][ELAPSED TIME: 0 sec.] [Relax Library][TOT= 6][100 %][ELAPSED TIME: 0 sec.] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [785526] Library Relaxation: Multi_proc [8] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [785526] Library Relaxation: Multi_proc [8] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [785526] Library Relaxation: Multi_proc [8] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [785526] Library Relaxation: Multi_proc [8] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [785526] Library Relaxation: Multi_proc [8] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [785526] Library Relaxation: Multi_proc [8] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [785526] Library Relaxation: Multi_proc [8] -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 52 SEQUENCES [PROTEIN] Multi Core Mode: 8 processors: --- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [785526] Library Relaxation: Multi_proc [8] Relaxation Summary: [785526]--->[776726] UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 OUTPUT RESULTS #### File Type= MSA Format= score_ascii Name= input.prot.fasta.muscle_rs_0_0.fasta.score_ascii #### File Type= MSA Format= html Name= input.prot.fasta.muscle_rs_0_0.fasta.html #### File Type= MSA Format= score_ascii Name= input.prot.fasta.muscle_rs_0_0.fasta.score_ascii # Command Line: t_coffee -infile input.prot.fasta.muscle_rs_0_0.fasta.aln -output score_ascii -special_mode evaluate -evaluate_mode t_coffee_fast [PROGRAM:T-COFFEE] # T-COFFEE Memory Usage: Current= 32.270 Mb, Max= 50.463 Mb # Results Produced with T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:09 - Revision 1613 - Build 432) # T-COFFEE is available from http://www.tcoffee.org # Register on: https://groups.google.com/group/tcoffee/ FORMAT of file input.prot.fasta.muscle_rs_0_0.fasta.ipi_i.fasta Not Supported[FATAL:T-COFFEE] CLUSTAL W (1.83) multiple sequence alignment C1 MDSFHERGRSRTIRQSARDGPSHQVRTRSSSRDSHRSEYHTPRSSSQVRV C2 MDSFHERGRSRTIRQSARDGPSHQVRTRSSSRDSHRSEYHTPRSSSQVRV C3 MEVVHERGRSRISRQNTRDGPSHLVRARSSSRASYRSEYHTPRSASQIRV C4 MEVVHERGRSRISRQNTRDGPSHLVRARSSSRDSYRSEYHTPRSASQIRV C5 MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV C6 MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV C7 MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV C8 MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV C9 MERGRERGRSRSSRADQQNSTGPQFRTRSISRDKTTTDYRGSRSTSQVRV C10 MERGRERGRSRSSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV C11 MERGRERGRSRSSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV C12 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C13 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C14 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C15 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C16 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C17 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C18 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C19 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C20 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C21 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C22 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C23 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C24 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C25 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C26 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C27 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C28 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C29 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C30 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C31 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C32 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C33 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C34 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C35 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENHRGEYRQSRSASQVRV C36 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C37 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C38 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C39 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C40 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C41 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENHRGEHRQSRSASQVRV C42 MEAPYERGRPRAARQHSRDGHDHHGRARSSSRENYRGEYRQSRSASQVRV C43 MEAPYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV C44 MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV C45 MEHSRERGRSRNIRHNSREPYENPSRSRSLSRDPNQIDRRQPRSASQIRV C46 MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV C47 MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV C48 MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV C49 MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV C50 MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV C51 MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV C52 MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV *: ****. * :: *:** ** : : .**:**:** C1 PTVFHRKRTDSLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL C2 PTVFHRKRTDFLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL C3 PTVFHRKKTDLLTVPPAPKDVCPTLKKGFLCDSNFCKKDHQLESLTDREL C4 PTVFHRKKTDLLTVPPAPKDVCPTLKKGFLCDSNFCKKDHQLESLTDREL C5 PTVFHKKGTGALTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL C6 PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL C7 PTVFHKKGTGTLTVPPAPKDVCPTLRKGFLCDSNFCKKDHQLESLTDREL C8 PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL C9 PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL C10 PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL C11 PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL C12 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C13 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C14 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C15 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C16 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C17 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C18 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDRGL C19 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C20 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C21 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C22 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C23 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C24 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C25 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C26 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C27 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C28 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C29 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C30 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C31 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C32 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C33 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C34 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C35 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C36 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C37 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C38 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C39 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C40 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C41 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C42 PTVFHKRRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C43 PTVFHKRRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL C44 PNLFHRKKTDALIVPPTPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL C45 PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSNFCKKDHQLDSLNDHEL C46 PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL C47 PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL C48 PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL C49 PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL C50 PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSQFCKKDHQLDSLNDHEL C51 PNLFHRKKTDTLIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL C52 PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL *.:**:: . * ***:***:****:*******.********:**.*: * C1 LLLIARKTCGSLEQQLNITAPKDTRLANPIADDFQQKDGPKITLLTLLET C2 LLLIARKTCGSLEQQLNITAPKDTRLANPIADDFQQKDGPKITLLTLLET C3 LLLIARKTCGSTEQQLSIVAPKDSRLANPIAEDFQQKDGPKVTLSMLIET C4 LLLIARKTCGSTEQQLSIVAPKDSRLANPIAEDFQQKDGPKVTLSMLIET C5 LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET C6 LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET C7 LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET C8 LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET C9 LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET C10 LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET C11 LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET C12 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C13 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C14 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C15 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C16 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C17 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C18 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C19 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C20 LLLIARKTCGSVEQQLNIAAPKDSRLANPTADDFQQEEGPKITLLTLIKT C21 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEVGPKITLLTLIKT C22 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C23 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPRITLLTLIKT C24 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C25 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C26 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C27 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C28 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C29 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C30 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C31 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C32 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C33 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C34 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C35 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C36 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C37 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C38 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C39 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C40 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFKQEEGPKITLLTLIKT C41 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFKQEEGPKITLLTLIKT C42 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C43 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT C44 LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSHGNSPKLTLAVLLQI C45 LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI C46 LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI C47 LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI C48 LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI C49 LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI C50 LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLGVLLQI C51 LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI C52 LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT ******:*** :.. .*.:*** ***** *:**.: .*::** *:: C1 AEYWSKQDIKGIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLG C2 AEYWSKQDIKGIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLG C3 AEYWSKQDIKNIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLG C4 AEYWSKQDIKNIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLG C5 AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG C6 AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG C7 AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG C8 AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG C9 AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG C10 AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG C11 AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG C12 AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG C13 AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG C14 AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG C15 AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG C16 AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLL