--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Fri Oct 27 15:31:37 WEST 2017
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=MUSCLE
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=/usr/bin/
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb
tcoffee.bin=t_coffee
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/Ebola_B1_2/VP30/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/Ebola_B1_2/VP30/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/Ebola_B1_2/VP30/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/Ebola_B1_2/VP30/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -4999.55         -5051.81
2      -4998.89         -5053.09
--------------------------------------
TOTAL    -4999.17         -5052.64
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/Ebola_B1_2/VP30/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/Ebola_B1_2/VP30/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/Ebola_B1_2/VP30/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         4.865891    0.151193    4.157468    5.656299    4.836413    580.05    582.24    1.000
r(A<->C){all}   0.136508    0.000308    0.103117    0.172093    0.135692    783.20    874.31    1.000
r(A<->G){all}   0.350116    0.000947    0.291112    0.411507    0.349418    524.16    572.08    1.000
r(A<->T){all}   0.042893    0.000114    0.022809    0.064342    0.042517    773.20    781.78    1.000
r(C<->G){all}   0.019763    0.000137    0.000340    0.041485    0.018683    612.50    737.06    1.000
r(C<->T){all}   0.396047    0.000981    0.338035    0.459970    0.395658    537.55    610.14    1.000
r(G<->T){all}   0.054672    0.000171    0.030003    0.080756    0.054082    805.86    832.32    1.000
pi(A){all}      0.325350    0.000130    0.302813    0.346937    0.325656    837.54    979.97    1.000
pi(C){all}      0.215917    0.000098    0.197649    0.236698    0.215862    904.24   1021.04    1.000
pi(G){all}      0.198261    0.000103    0.179903    0.219151    0.197751    757.15    829.27    1.000
pi(T){all}      0.260472    0.000113    0.239152    0.279659    0.260464   1010.09   1034.93    1.000
alpha{1,2}      0.226343    0.000403    0.189318    0.267720    0.224775   1058.10   1138.28    1.000
alpha{3}        4.640804    1.072590    2.640299    6.579942    4.534089   1198.33   1349.67    1.000
pinvar{all}     0.030870    0.000313    0.000258    0.063070    0.028976   1257.52   1379.26    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-4455.78805
Model 2: PositiveSelection	-4455.78806
Model 0: one-ratio	-4518.58322
Model 3: discrete	-4400.880205
Model 7: beta	-4401.385939
Model 8: beta&w>1	-4401.383086


Model 0 vs 1	125.59034000000065

Model 2 vs 1	1.9999999494757503E-5

Model 8 vs 7	0.0057059999999182764
>C1
MDSFHERGRSRTIRQSARDGPSHQVRTRSSSRDSHRSEYHTPRSSSQVRV
PTVFHRKRTDSLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL
LLLIARKTCGSLEQQLNITAPKDTRLANPIADDFQQKDGPKITLLTLLET
AEYWSKQDIKGIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLG
QDQSESVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSSVVISGLRLLVPQSEDTETSTYTETRAWSEEGGPH
>C2
MDSFHERGRSRTIRQSARDGPSHQVRTRSSSRDSHRSEYHTPRSSSQVRV
PTVFHRKRTDFLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL
LLLIARKTCGSLEQQLNITAPKDTRLANPIADDFQQKDGPKITLLTLLET
AEYWSKQDIKGIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLG
QDQSESVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSSVVISGLRLLVPQSEDTETSTYTETRAWSEEGGPH
>C3
MEVVHERGRSRISRQNTRDGPSHLVRARSSSRASYRSEYHTPRSASQIRV
PTVFHRKKTDLLTVPPAPKDVCPTLKKGFLCDSNFCKKDHQLESLTDREL
LLLIARKTCGSTEQQLSIVAPKDSRLANPIAEDFQQKDGPKVTLSMLIET
AEYWSKQDIKNIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLG
QDQSESVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSSVVISGLRMLIPQSEATEVVTPSETCTWSEGGSSH
>C4
MEVVHERGRSRISRQNTRDGPSHLVRARSSSRDSYRSEYHTPRSASQIRV
PTVFHRKKTDLLTVPPAPKDVCPTLKKGFLCDSNFCKKDHQLESLTDREL
LLLIARKTCGSTEQQLSIVAPKDSRLANPIAEDFQQKDGPKVTLSMLIET
AEYWSKQDIKNIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLG
QDQSESVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSSVVISGLRMLIPQSEATEVVTPSETCTWSEGGSSH
>C5
MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV
PTVFHKKGTGALTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL
LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET
AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG
QDQAESVLEVYQRLHSDKGGAFEAALWQQWDRQSLTMFISAFLHVALQLS
CESSTVVISGLRLLAPPSVNEGLPPAPGEYTWSEDSTTo
>C6
MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV
PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL
LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET
AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG
QDQAESVLEVYQRLHSDKGGAFEAALWQQWDRQSLTMFISAFLHVALQLS
CESSTVVISGLRLLAPPSVNEGLPPAPGEYTWSEDSTTo
>C7
MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV
PTVFHKKGTGTLTVPPAPKDVCPTLRKGFLCDSNFCKKDHQLESLTDREL
LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET
AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG
QDQAESVLEVYQRLHSDKGGAFEAALWQQWDRQSLTMFISAFLHVALQLS
CESSTVVISGLRLLAPPSVNEGLPPAPGEYTWSEDSTTo
>C8
MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV
PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL
LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET
AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG
QDQAESVLEVYQRLHSDKGGAFEAALWQQWDRQSLTMFISAFLHVALQLS
CESSTVVISGLRLLAPPSVNEGLPPAPGEYTWSEDSTTo
>C9
MERGRERGRSRSSRADQQNSTGPQFRTRSISRDKTTTDYRGSRSTSQVRV
PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL
LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET
AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG
QDQAESVLEVYQRLHSDKGGAFEAALWQQWDRQSLTMFISAFLHVALQLS
CESSTVVISGLRLLAPPSVNEGLPPAPGEYTWSEDSTTo
>C10
MERGRERGRSRSSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV
PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL
LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET
AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG
QDQAESVLEVYQRLHSDKGGAFEAALWQQWDRQSLTMFISAFLHVALQLS
CESSTVVISGLRLLAPPSVNEGLPPAPGEYTWSEDSTTo
>C11
MERGRERGRSRSSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV
PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL
LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET
AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG
QDQAESVLEVYQRLHSDKGGAFEAALWQQWDRQSLTMFISAFLHVALQLS
CESSTVVISGLRLLAPPSVNEGLPPAPGEYTWSEDSTTo
>C12
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C13
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C14
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C15
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C16
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C17
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C18
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDRGL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C19
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESAAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C20
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNIAAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C21
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEVGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C22
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C23
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPRITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C24
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C25
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
HDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C26
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C27
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C28
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNQGTCSWSDEGTPo
>C29
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C30
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C31
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CEoSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C32
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C33
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C34
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C35
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENHRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C36
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C37
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C38
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C39
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C40
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFKQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFIAAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C41
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENHRGEHRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFKQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDEGTPo
>C42
MEAPYERGRPRAARQHSRDGHDHHGRARSSSRENYRGEYRQSRSASQVRV
PTVFHKRRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDDGTPo
>C43
MEAPYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKRRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTTEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSWSDDGTPo
>C44
MMEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIR
VPNLFHRKKTDALIVPPTPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHE
LLLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSHGNSPKLTLAVLLQ
IAEHWATRDLRQIEDSKLRALLTLCAVLTRKFSKSQLGLLCETHLRHEGL
GQDQADSVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFISAFLNIALQI
PCESSSVVVSGLATLYPAQDNSTPSEATNDTTWSSTVEo
>C45
MEHSRERGRSRNIRHNSREPYENPSRSRSLSRDPNQIDRRQPRSASQIRV
PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSNFCKKDHQLDSLNDHEL
LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI
AEHWATRDLRQIEDSKLRALLTLCAVLTRKFSKSQLSLLCETHLRHEGLG
QDQADSVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFISAFLNIALQIP
CESSSVVVSGIATLYPAQDNSTPSEATNDTTWSSTVGoo
>C46
MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV
PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL
LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI
AEHWATRDLRQIEDSKLRALLTLCAVLTRKFSKSQLGLLCETHLRHEGLG
QDQADSVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFISAFLNIALQTP
CESSSVVVSGLATLYPAQDNSTLSEATNDTTWSSTVEoo
>C47
MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV
PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL
LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI
AEHWATRDLRQIEDSKLRALLTLCAVLTRKFSKSQLGLLCETHLRHEGLG
QDQADSVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFISAFLNIALQTP
CESSSVVVSGLATLYPAQDNSTPSEATNDTTWSSTVEoo
>C48
MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV
PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL
LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI
AEHWATRDLRQIEDSKLRALLTLCAVLTRKFSKSQLGLLCETHLRHEGLG
QDQADSVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFISAFLNIALQTP
CESSSVVVSGLATLYPAQDNSTPSEATNDTTWSSTVEoo
>C49
MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV
PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL
LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI
AEHWATRDLRQIEDSKLRALLTLCAVLTRKFSKSQLGLLCETHLRHEGLG
QDQADSVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFISAFLNIALQIP
CESSSVVVSGLATLYPAQDNSTPSEATNDTTWSSTVEoo
>C50
MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV
PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSQFCKKDHQLDSLNDHEL
LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLGVLLQI
AEHWATRDLRQIEDSKLRALLTLCAVLTRKFSKSQLGLLCETHLRHEGLG
QDQADSVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFISAFLNIALQTP
CESSSVVVSGLATLYPTQDNSKPSEATNDTTWSSTVEoo
>C51
MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV
PNLFHRKKTDTLIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL
LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI
AEHWATRDLRQIEDSKLRALLTLCAVLTRKFSKSQLGLLCETHLRHEGLG
QDQADSVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFISAFLNIALQTP
CESSSVVVSGLATLYPAQDNSTPSEATNDTToooooooo
>C52
MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
QDQAEPVLEVYQRLHSDKGGSFEAALWQQWDRQSLIMFITAFLNIALQLP
CESSAVVVSGLRTLVPQSDNEEASTNPGTCSoooooooo

PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:09 - Revision 1613 - Build 432)
-full_log      	S	[0] 
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-extend_mode   	S	[0] 	very_fast_triplet
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-seq_name_for_quadruplet	S	[0] 	all
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-clean         	S	[0] 	no
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-template_mode 	S	[0] 
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-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
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-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
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-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
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-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	input.prot.fasta.muscle_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
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-profile_mode  	S	[0] 	cw_profile_profile
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-dp_mode       	S	[0] 	linked_pair_wise
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-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
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-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
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-start         	D	[0] 	0 
-len           	D	[0] 	0 
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-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
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-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
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-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
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-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
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-overaln_P1    	D	[0] 	0 
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-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
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-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [785526]

Library Relaxation: Multi_proc [8]
 
		[Relax Library][TOT=    6][  0 %][ELAPSED TIME:    0 sec.]
		[Relax Library][TOT=    6][ 33 %][ELAPSED TIME:    0 sec.]
		[Relax Library][TOT=    6][ 50 %][ELAPSED TIME:    0 sec.]
		[Relax Library][TOT=    6][ 66 %][ELAPSED TIME:    0 sec.]
		[Relax Library][TOT=    6][ 83 %][ELAPSED TIME:    0 sec.]
		[Relax Library][TOT=    6][100 %][ELAPSED TIME:    0 sec.]
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [785526]

Library Relaxation: Multi_proc [8]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [785526]

Library Relaxation: Multi_proc [8]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [785526]

Library Relaxation: Multi_proc [8]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [785526]

Library Relaxation: Multi_proc [8]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [785526]

Library Relaxation: Multi_proc [8]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [785526]

Library Relaxation: Multi_proc [8]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [785526]

Library Relaxation: Multi_proc [8]
 
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.muscle_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 52 SEQUENCES  [PROTEIN]
	Multi Core Mode: 8 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved Sinput.prot.fasta.muscle_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [785526]

Library Relaxation: Multi_proc [8]
 
Relaxation Summary: [785526]--->[776726]



UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1


OUTPUT RESULTS
	#### File Type= MSA             Format= score_ascii     Name= input.prot.fasta.muscle_rs_0_0.fasta.score_ascii
	#### File Type= MSA             Format= html            Name= input.prot.fasta.muscle_rs_0_0.fasta.html
	#### File Type= MSA             Format= score_ascii     Name= input.prot.fasta.muscle_rs_0_0.fasta.score_ascii

# Command Line: t_coffee -infile input.prot.fasta.muscle_rs_0_0.fasta.aln -output score_ascii -special_mode evaluate -evaluate_mode t_coffee_fast  [PROGRAM:T-COFFEE]
# T-COFFEE Memory Usage: Current= 32.270 Mb, Max= 50.463 Mb
# Results Produced with T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:09 - Revision 1613 - Build 432)
# T-COFFEE is available from http://www.tcoffee.org
# Register on: https://groups.google.com/group/tcoffee/

FORMAT of file input.prot.fasta.muscle_rs_0_0.fasta.ipi_i.fasta Not Supported[FATAL:T-COFFEE]
CLUSTAL W (1.83) multiple sequence alignment

C1              MDSFHERGRSRTIRQSARDGPSHQVRTRSSSRDSHRSEYHTPRSSSQVRV
C2              MDSFHERGRSRTIRQSARDGPSHQVRTRSSSRDSHRSEYHTPRSSSQVRV
C3              MEVVHERGRSRISRQNTRDGPSHLVRARSSSRASYRSEYHTPRSASQIRV
C4              MEVVHERGRSRISRQNTRDGPSHLVRARSSSRDSYRSEYHTPRSASQIRV
C5              MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV
C6              MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV
C7              MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV
C8              MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV
C9              MERGRERGRSRSSRADQQNSTGPQFRTRSISRDKTTTDYRGSRSTSQVRV
C10             MERGRERGRSRSSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV
C11             MERGRERGRSRSSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRV
C12             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C13             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C14             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C15             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C16             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C17             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C18             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C19             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C20             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C21             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C22             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C23             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C24             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C25             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C26             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C27             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C28             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C29             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C30             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C31             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C32             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C33             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C34             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C35             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENHRGEYRQSRSASQVRV
C36             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C37             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C38             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C39             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C40             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C41             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENHRGEHRQSRSASQVRV
C42             MEAPYERGRPRAARQHSRDGHDHHGRARSSSRENYRGEYRQSRSASQVRV
C43             MEAPYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
C44             MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV
C45             MEHSRERGRSRNIRHNSREPYENPSRSRSLSRDPNQIDRRQPRSASQIRV
C46             MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV
C47             MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV
C48             MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV
C49             MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV
C50             MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV
C51             MEHSRERGRSSNMRHNSREPYENPSRSRSLSRDPNQVDRRQPRSASQIRV
C52             MEASYERGRPRAARQHSRDGHDHHVRARSSSRENYRGEYRQSRSASQVRV
                *:   ****.   *   ::      *:** **     : : .**:**:**

C1              PTVFHRKRTDSLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL
C2              PTVFHRKRTDFLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL
C3              PTVFHRKKTDLLTVPPAPKDVCPTLKKGFLCDSNFCKKDHQLESLTDREL
C4              PTVFHRKKTDLLTVPPAPKDVCPTLKKGFLCDSNFCKKDHQLESLTDREL
C5              PTVFHKKGTGALTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL
C6              PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL
C7              PTVFHKKGTGTLTVPPAPKDVCPTLRKGFLCDSNFCKKDHQLESLTDREL
C8              PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL
C9              PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL
C10             PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL
C11             PTVFHKKGTGTLTVPPAPKDICPTLRKGFLCDSNFCKKDHQLESLTDREL
C12             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C13             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C14             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C15             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C16             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C17             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C18             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDRGL
C19             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C20             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C21             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C22             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C23             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C24             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C25             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C26             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C27             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C28             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C29             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C30             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C31             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C32             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C33             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C34             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C35             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C36             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C37             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C38             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C39             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C40             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C41             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C42             PTVFHKRRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C43             PTVFHKRRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
C44             PNLFHRKKTDALIVPPTPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL
C45             PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSNFCKKDHQLDSLNDHEL
C46             PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL
C47             PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL
C48             PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL
C49             PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL
C50             PNLFHRKKTDALIVPPAPKDICPTLKKGFLCDSQFCKKDHQLDSLNDHEL
C51             PNLFHRKKTDTLIVPPAPKDICPTLKKGFLCDSKFCKKDHQLDSLNDHEL
C52             PTVFHKKRVEPLTVPPAPKDICPTLKKGFLCDSSFCKKDHQLESLTDREL
                *.:**:: .  * ***:***:****:*******.********:**.*: *

C1              LLLIARKTCGSLEQQLNITAPKDTRLANPIADDFQQKDGPKITLLTLLET
C2              LLLIARKTCGSLEQQLNITAPKDTRLANPIADDFQQKDGPKITLLTLLET
C3              LLLIARKTCGSTEQQLSIVAPKDSRLANPIAEDFQQKDGPKVTLSMLIET
C4              LLLIARKTCGSTEQQLSIVAPKDSRLANPIAEDFQQKDGPKVTLSMLIET
C5              LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET
C6              LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET
C7              LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET
C8              LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET
C9              LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET
C10             LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET
C11             LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVET
C12             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C13             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C14             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C15             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C16             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C17             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C18             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C19             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C20             LLLIARKTCGSVEQQLNIAAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C21             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEVGPKITLLTLIKT
C22             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C23             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPRITLLTLIKT
C24             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C25             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C26             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C27             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C28             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C29             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C30             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C31             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C32             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C33             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C34             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C35             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C36             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C37             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C38             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C39             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C40             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFKQEEGPKITLLTLIKT
C41             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFKQEEGPKITLLTLIKT
C42             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C43             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
C44             LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSHGNSPKLTLAVLLQI
C45             LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI
C46             LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI
C47             LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI
C48             LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI
C49             LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI
C50             LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLGVLLQI
C51             LLLIARRTCGIIESNSQITSPKDMRLANPTAEDFSQGNSPKLTLAVLLQI
C52             LLLIARKTCGSVEQQLNITAPKDSRLANPTADDFQQEEGPKITLLTLIKT
                ******:***  :.. .*.:*** ***** *:**.:  .*::**  *:: 

C1              AEYWSKQDIKGIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLG
C2              AEYWSKQDIKGIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLG
C3              AEYWSKQDIKNIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLG
C4              AEYWSKQDIKNIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLG
C5              AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG
C6              AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG
C7              AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG
C8              AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG
C9              AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG
C10             AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG
C11             AEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG
C12             AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
C13             AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
C14             AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
C15             AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLLCETHLRREGLG
C16             AEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKSQLSLL