--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Fri Nov 10 15:53:51 WET 2017
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS1/revisao14/ClustalW2/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS1/revisao14/ClustalW2/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS1/revisao14/ClustalW2/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -7799.94         -7815.36
2      -7799.94         -7816.92
--------------------------------------
TOTAL    -7799.94         -7816.41
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS1/revisao14/ClustalW2/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS1/revisao14/ClustalW2/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS1/revisao14/ClustalW2/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         1.273682    0.002599    1.180191    1.382338    1.274154   1374.77   1426.55    1.000
r(A<->C){all}   0.115457    0.000128    0.093629    0.137748    0.114765    989.77   1061.96    1.000
r(A<->G){all}   0.296287    0.000341    0.260611    0.332661    0.295522    766.46    858.80    1.000
r(A<->T){all}   0.078855    0.000059    0.065196    0.095190    0.078500   1016.70   1104.92    1.000
r(C<->G){all}   0.144625    0.000204    0.118463    0.172872    0.144082    970.82    994.12    1.000
r(C<->T){all}   0.289277    0.000315    0.254214    0.322338    0.289186    834.62    866.89    1.000
r(G<->T){all}   0.075499    0.000072    0.058801    0.091398    0.075277   1104.20   1171.98    1.000
pi(A){all}      0.299417    0.000116    0.279486    0.321999    0.299299   1196.34   1223.64    1.000
pi(C){all}      0.168205    0.000074    0.151560    0.185435    0.168260   1007.57   1058.45    1.000
pi(G){all}      0.190989    0.000079    0.173455    0.208621    0.190713    907.04    953.52    1.000
pi(T){all}      0.341388    0.000130    0.320145    0.364175    0.341499    946.11   1001.95    1.000
alpha{1,2}      0.887219    0.019323    0.642757    1.153104    0.865232    850.60   1146.46    1.000
alpha{3}        1.441365    0.098319    0.910752    2.041258    1.404061   1353.53   1384.45    1.000
pinvar{all}     0.040639    0.001062    0.000017    0.104445    0.033027    975.61   1137.33    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-7170.181821
Model 2: PositiveSelection	-7141.293411
Model 0: one-ratio	-7310.560553
Model 3: discrete	-7140.738871
Model 7: beta	-7183.494041
Model 8: beta&w>1	-7143.580275


Model 0 vs 1	280.75746400000025

Model 2 vs 1	57.77682000000095

Additional information for M1 vs M2:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: S3_SFBB11_AB270795_MDSFBB3alpha)

            Pr(w>1)     post mean +- SE for w

    71 A      0.966*        3.220
    77 Q      0.983*        3.258
    81 Q      0.995**       3.285
   110 L      0.997**       3.290
   115 F      0.917         3.106
   117 L      0.689         2.581
   156 P      0.539         2.237
   158 E      0.660         2.515
   166 N      0.999**       3.295
   168 Q      0.938         3.154
   214 T      0.635         2.457
   232 S      0.651         2.496
   248 T      1.000**       3.296
   250 G      0.972*        3.232
   344 D      0.674         2.548
   370 R      0.938         3.155

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: S3_SFBB11_AB270795_MDSFBB3alpha)

            Pr(w>1)     post mean +- SE for w

    71 A      0.951*        3.452 +- 0.798
    77 Q      0.979*        3.533 +- 0.692
    81 Q      0.994**       3.572 +- 0.622
   110 L      0.996**       3.579 +- 0.608
   115 F      0.880         3.255 +- 0.994
   117 L      0.630         2.590 +- 1.304
   158 E      0.555         2.353 +- 1.277
   166 N      0.999**       3.586 +- 0.593
   168 Q      0.916         3.359 +- 0.909
   214 T      0.542         2.329 +- 1.288
   232 S      0.562         2.385 +- 1.292
   248 T      1.000**       3.587 +- 0.591
   250 G      0.964*        3.493 +- 0.753
   344 D      0.594         2.478 +- 1.297
   370 R      0.918         3.366 +- 0.903


Model 8 vs 7	79.82753199999934

Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: S3_SFBB11_AB270795_MDSFBB3alpha)

            Pr(w>1)     post mean +- SE for w

     5 R      0.792         2.165
    22 P      0.734         2.055
    33 H      0.608         1.833
    71 A      0.994**       2.500
    77 Q      0.996**       2.503
    81 Q      0.998**       2.507
   110 L      0.999**       2.508
   115 F      0.985*        2.485
   117 L      0.894         2.331
   119 F      0.593         1.814
   130 A      0.504         1.660
   156 P      0.897         2.339
   157 P      0.540         1.714
   158 E      0.930         2.394
   166 N      1.000**       2.509
   168 Q      0.987*        2.488
   185 R      0.733         2.050
   197 R      0.745         2.076
   200 Y      0.763         2.114
   214 T      0.905         2.351
   229 T      0.848         2.258
   232 S      0.912         2.364
   248 T      1.000**       2.510
   250 G      0.993**       2.498
   278 R      0.858         2.273
   295 R      0.505         1.672
   297 S      0.662         1.945
   298 E      0.821         2.209
   299 E      0.754         2.098
   322 I      0.620         1.875
   327 G      0.841         2.242
   344 D      0.908         2.357
   350 T      0.757         2.098
   370 R      0.985*        2.485
   372 V      0.774         2.127
   380 H      0.799         2.171

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: S3_SFBB11_AB270795_MDSFBB3alpha)

            Pr(w>1)     post mean +- SE for w

     5 R      0.813         2.215 +- 0.672
    22 P      0.778         2.156 +- 0.756
    33 H      0.669         1.950 +- 0.845
    39 L      0.521         1.676 +- 0.893
    58 L      0.532         1.695 +- 0.891
    71 A      0.995**       2.580 +- 0.313
    77 Q      0.997**       2.584 +- 0.306
    81 Q      0.999**       2.588 +- 0.297
   110 L      0.999**       2.588 +- 0.296
   115 F      0.988*        2.565 +- 0.342
   117 L      0.915         2.425 +- 0.551
   119 F      0.656         1.928 +- 0.838
   130 A      0.577         1.784 +- 0.868
   145 K      0.519         1.680 +- 0.876
   151 C      0.550         1.728 +- 0.889
   156 P      0.906         2.400 +- 0.548
   157 P      0.608         1.837 +- 0.875
   158 E      0.937         2.462 +- 0.486
   166 N      1.000**       2.589 +- 0.294
   168 Q      0.990*        2.570 +- 0.336
   185 R      0.783         2.170 +- 0.765
   197 R      0.787         2.174 +- 0.739
   198 T      0.545         1.723 +- 0.880
   200 Y      0.795         2.186 +- 0.703
   214 T      0.919         2.428 +- 0.532
   229 T      0.862         2.311 +- 0.614
   232 S      0.925         2.441 +- 0.517
   248 T      1.000**       2.589 +- 0.293
   250 G      0.995**       2.580 +- 0.316
   278 R      0.873         2.335 +- 0.605
   295 R      0.580         1.796 +- 0.851
   297 S      0.713         2.034 +- 0.770
   298 E      0.844         2.280 +- 0.652
   299 E      0.787         2.169 +- 0.713
   322 I      0.680         1.978 +- 0.793
   327 G      0.864         2.319 +- 0.631
   344 D      0.924         2.440 +- 0.525
   347 G      0.536         1.707 +- 0.879
   350 T      0.795         2.188 +- 0.726
   370 R      0.989*        2.568 +- 0.341
   372 V      0.810         2.218 +- 0.709
   380 H      0.830         2.253 +- 0.682
   381 V      0.548         1.727 +- 0.886

>C1
VFYPANKIIEMSHVRESETPEDRVVEILSRLPPKSLMRFKCIHKSWFSLI
NNLSFVAKHLSNSVDNKLSSSTCILLNRSQAHIFPDQSWKQEVFWSMINF
SIDSDENNLHYDVEDLNIPFALKDHDFVLIFGYCNGILCVEAGKNVLLCN
PATREFKQLPDSCLLLPSPPERKFELETNFQALGFGYDCNAKEYKVVRII
ENCEYSDDERTYYYRIALPHTAELYTTTANSWKEIKIDISSTTYSCSRSV
FMKGFCYWYATDGEEYILSFDLGDDTFHIIQLPSRRESGFRFYYIFLRNE
SLASFCSRYDRSEDSESCEIWVMDDYDGDKSSWTKLLNIGPLQGIKKPLT
FWRSDELLMLDSDGRATSYNYSTRNLKYLHIPPILNRVVDFEVLIYVKSI
VHVKoooooooooooooooooooo
>C2
MSQVHESETPEDKVVEILCRLPPKSLMRFKCIRKSWCTLINRPSFVAKHL
NNSVDNKLSSSTCILLNRSQAHIFPDQSWKQEVFWSTINLSIDSDEHNLH
YDVEDLIIPFPLEDHDFVLIFGYCNGIVCVDAGKNVLLCNPATREFRQLP
DSCLLQPPPKGKFELETTFQALGFGYDCNAKEYKVVRIVENCEYSDDEQT
FYHRIALPHTAEVYTTAANFWKEIKIDISIKTYHCSCSVYLKGFCYWFAS
DNEEYILAFYLGDETFHIIQLPSRRESGFTFDYIFLRNESLASFCSPYNP
SEDSKLFEIWVMDDYDGVSSSWTKLLTVGPFKGVEYPLTLWKCDELLMLA
SDGRATSYNSSTGNLKYLHIPPILNKVVDFEGLIYVKSIVPLKooooooo
oooooooooooooooooooooooo
>C3
MSQVCESETPEDRVVETLSRLPPKSLMRFKCICKSWCTLINSLSFVAKHL
NNSMDNKLSSSTCILLSRSQAHVFPDNSWKPEVFWSMINLSIDSDEHNLH
YDVEDLNIPFPLEGHDFVQIEGYCNGIVCVIAGTSLYLINVLLCNPATGK
FRQLPPSYLLLPSRPQGKFQLESIFGGLGFGYDCKAKDYKVVQIIENCEY
SDDQQYYYHRIALPHTAEVYTMAANSWRVIKIDISSETYHYSSSVYLNGF
FYWFAIDGEKYILSFDLGDEIFHRIQLPSRRESDFEFSNIFLCNKSIASF
CSCCDPSDEDSTLCEIWVMDDYDAVKRSWTKLLTFGPLKDIENPFTFWKT
DELLMVAAGGRATTYNSSTGNLNYLHIPPILNEVRDFEALIYMESIVPVK
oooooooooooooooooooooooo
>C4
MFHVRESETPEDKVVEILSRLPSKSLMRFKCTRKSWCTLIISSSFVAKHL
SNSVDNKLSSSTCILLNRSQMPVFPDKSWKYEILWSMIYLSIYSDEHNHH
YDVEDLNIPFPLEDHHPVQIHGYCNGIVCVIAGKTVIILCNPGTGEFRQL
PDSCLLVPLPKEKFQLETIFGGLGFGYDCKAKEYKVVQIIENCEYSDDER
TFNHSIPLPHTAEVYTIAANSWKEIKIDISTKTYPSSCSVYLKGFCYWFA
SDGEEYILSFDLGDEIFHRIQLPSRRESSFKFYDLFLYNESITSYCSHYD
PTEDSKLFEIWVMDDYDGIKTSWTKLLTVGPFKGIEYPLTLWKCDELLML
ASDGRAISYNSSIGNLKYLHIPPIINEVIDFETLSYVESIVPIKoooooo
oooooooooooooooooooooooo
>C5
MSQEHESEAPEDRVVEILSRLPPKSLMRFKCIRNSWCTLINSPRFVAKHI
NNSVDNKLSSSTCILLHRSQTPIFPYDSWKREFFWSMINFSIDSDESNLH
YDVEDLTNVPLLQWEDHHEVEIHGYCNGIVCVTVGEYFFLCNPATGEFSQ
LPNSRLLLPLPRGKGKFGLETTVKGLGFGYDCKAKEYKVVRIIENYDCEY
SDGEETYIEHTALPHTAEVYTTTANSWKEIKINISSKILSLYSYPYSCSV
YLKGFCYWLSSDDEEYICSFNLGDEIFDRIELPSRRESGFKLDGIFLYNE
SITYYCTSYEERSRLFEIWVMDNYDGVKSSWTKHLTAGPFKGIEFPLTLR
KHDELLMIASDGRATSYNSNTGNLKYLHIPVIIYRNRVIDYAKSIVPVKR
VEGKVPFSPIoooooooooooooo
>C6
MSQVRKSETLKDRVTEMTQVRESETPEVRVAEILSRLPPKSLMRFKCIRK
SWCTAINNPSFTAKHLSNSVDNKFSSSTCILLHRSHMPVFPDRSWKREYF
WSMINLSHDSDEHNLYYDVEDLNIQFPLEDHDLVSVHGYCNGIVCLIVGK
HAVLYNPATRELKQLPDSCLLLPSPPKGKFELESSFQGMGFGYDSKAKEY
KVVKIIENCEYSDYERTFSHRIALPHTAEVYVTTTNSWRVIKIEISSDTY
NCSCSVYLKGFCYWFASDDEEYILSFDLGDEIFHRIQLPRRKESGFLFYD
LFLFNESIASFCSHYDKSDNSRILEILEIWVMDDCDGVKSSWTKLQTLGP
FKDNENLLTFWKSDELLMVTSDNRVISYNSSTGNLKYIHIPPIINKITGF
EALIYVESIVSVKRVEGKVPFSPI
>C7
MSQVRESETPEDRVVEILSRLSPKSLLRFKCIRKSWCTLVNSPSFVAKHL
SNSLENKLSSSTCILLNRSQFHIFPDQSWKREILWSMINLSIDSDVHNLH
YDVKPLNIPFPRDDHNPVQIHGYCNGIVCLIEGDNVLLCNPSTREFRLLP
NSCLLVPHPEGKFELETTFHGMGFGYDCKAKEYKVVQIIENCEYSDDGQT
YQHCIAYPYTAEVYTTAANFWKEIKINISSTTHPYPFSVYLKGFCYWFAT
DGEECILSFDLGDEIFHRIQLPSKIESGFEFCGLFLYNESITSYCCHNDP
SEDSKLFEIWVMDGYGGVNSSWTKILTIGPSKDIEYPLTFWKCDELLMFA
SGRRVTSYNSSTGNLKDLHIPPIMHQVTDLEALIYEESLVPIKooooooo
oooooooooooooooooooooooo
>C8
MSQVSETETPEDRVVAIMSKLPPKSLMRFKCIRKSWCTVINSPSFVAKHL
SNSVDNKFSSSTCILLNRSQVHVFPDKSWKHEVLWSMINLFNERVARTLY
YDVEDLNIPFPRDDHQHVLIHGYCNGIVCVISGKNILLCNPATREFRQLP
DSFLLLPSPLGGKFELETDFGGLGFGYDCRAKDYKIVRIIENCEYSDDER
TYYHRIPMPHTAEVFTMATNYWKEIKIDISSKTYPCSCSVYLKGFCYWFT
RDGEEFILSFDLGDERFNRIQLPSRRESGLEFYYIFLCNESIASFCSRYD
RSEDSKSCEIWVMDDYDGVKSSWTKLLVAGPFKGIEKPLTLWKCDELFMI
DTDGRVISYNSSIGYLSYLHIPPIINRVIDSQALIYVESIVPIKoooooo
oooooooooooooooooooooooo
>C9
MSLVCESETPEDQLVEILSWLRPKSLMRFKCIRKSWCTIINSSSFVAKHL
SNSIDNKLSSSTCILLNRCQVHDFPDRSWKQDVFWSMINLSIDSDKNNLH
YDVEDLNIPFPMEDQDNVELHGYCNGIVCVIVGKNVLLCNPATGEFRQLP
DSSLLLPLPKGRFGLETVFKGLGFGYDCKAKEYKVVRIIENCDCEYSEGE
ESYYERILLPHTAEVYTMTTNSWKEIKIDVTSDTDPYCIPYSCSVYLKGF
CYWFAMDNGEYIFSFDLGDEIFHIIELPSRREFGFKFYGIFLYNESITSY
CSRYEEDCKLFEIWVMDDDDGVKSSWTKLLTVGPFKDIDYPLTLGKCDEV
LMLGSYGRAAFCNSSIGNLKYLHIPPIINWMIDYVKSIVPVKoooooooo
oooooooooooooooooooooooo
>C10
MSQVHESETPEDKVVEILSRLSPKSLMRFKCVHKSWCTIINSPSFVAKHL
SNTVDNKFSSFTCILFNRCQVHVFPDRSWKRDVFWSMINLSIDSDEHNLH
YDVEDRNIPFPIEVQDNVQLYGYCNGIVCVIVGENVLLCNPATREFKQLP
DSSLLLPLPTGKFGLETLFKGLGFGYDCKTKEYKVVRIIENCDCEYSDGK
ESYIERILLPYTAEVYTTVANSWKEIKIDTSSDTDPYCIPYSCSMYLKGF
CYWFANDNGEYIFSFDLGDEIFHRIELPFRRESDFKFCGLFLYNESVASY
CSCYEEDCKLVETWVMDDYDGVKSSWTKLLTVGPFKDIESPLKFWKCDEV
LILSSYGKATSYNSSTGNLKYFHIPPIINWMIDYVETIVPVKoooooooo
oooooooooooooooooooooooo
>C11
MSQVRECETPEDKVVEILSKLPPKSLIRFKCIRKSWCTIINSPSFVAKHL
RISMDNKLSSTTCILLNRCQVHVFPDRSWKQDVFWSMTNLSIDSDEHNLH
YDVEDLNIPFPMEDQDNVEIHGYCNGIVCVIVGKNVLLCNPATREFRQLP
NSSLLLPLPKGRFGLETTFKGMGFGYDCKTKEYKVVRIIENCDCEYSEDG
ESYYERILLPHTAEVYTTTANSWKEIKIDISIETRWYCIPYSCSVYLKGF
CYWFAYDNGEYVFSFDLGDEIFHRIELPSRRESDFKFYGIFLYNESVTSY
CYRHEEDCELFEIWVMDDYDGVKSSWTKQLTIGPLKDIDYPLTLWKCDEI
LMLGSYGRAASCNSSTGNLKYLHIPPIINWMIDYVKSIVPVKoooooooo
oooooooooooooooooooooooo
>C12
MSQVRESETPEDRMVEILSRLPPKSLMRFKCIRKSWCTLINSPCFVAKHL
SDSVDNKLSSSTCILLNCSQAHIFPDQSWKQGVLWSVIYLSIDGDELHYD
IEDLTNVPFLKDDHHEVEIHGYCDGIVCVTVDENFFLCNPATGEFRQLPD
SCLLLPLPGVKVKFGLETTLKGLGFGYDCKAKEYKVVRIIDNYDCEYSDD
GETYIEHIALPHTAEVYTMAANSWKEITIDILSKILSSYSEPYSYSVYLK
GFCYWLSCDLEEYIFSFDLANEISDMIELPFRGEFGFKRDGIFLYNESLT
YYCTSYEEPSTLFEIWVMDYDDGFKSSWTKHLTVGPFKDMEFPLTPWKRD
ELLMIASDGRAASYNSCTGNFKYLHIPVIINENRVVDYVKSIVLVNoooo
oooooooooooooooooooooooo
>C13
MLNKTVEMSQVHDSETPEDRVVEILSRLPPKSLMRFKCIHKSWCTLINSP
SFVAKYLSNSVDNKLSSSTCILLNRTQMHVFPDQSWKYETLWSMMNLSNY
SDEHNLQYDFKDLNIPFPTEDHHPVQIHSYCNGIVCVITGKSVRILCNPA
TREFRQLPASCLLLPSPPEGKFQLETIFEGLGFGYDYKAKEYKVVQIIEN
CEYSDDERRYYHRIALPHTAEVYTATANSWKEIKIEISSKTYQCYGSEYL
KGFCYWLANDGEEYILSFDLGDEIFHKIQLPSRRESGFKFCNIFLCNESI
ASFCCCYDPKNEDSTLCEIWVMDDYGGVKSSWTKLVTVGPLKGINENPLA
FWKSDELLMVSCDGSVTSYNSSTKNLSYLNIPPILNEVRDFQAVIYVESI
VSVKoooooooooooooooooooo
>C14
MSQVHENETLEDRVVEILSRLLPKSLMRFKCIRKSWCTLINSPSFVAKQL
SNSVDNKFSSSTCILLNRSQTHVFPDNSWKQEVFWSMINLSIDSDEHNLH
YDVEDLNIPFPLEDHDYVLILGYCNGIVCVTAGKNILLCNPTTREFMRLP
SSCLLLPSRPKGKFELETVFRALGFGYDCKAKEYKVVQIIENSEYSDDER
TYYHRIPLPHTAEVYTTAANSWREIKIDISTKTYSCSCQVYLKGFCYWYA
TDAEEYILSFDLGDEIFHRIQLPSRRESGFKFYYIFLRNESLASFCSRYD
RSDKSESCEIWVMHNYDGVKSSWTKLLIIGPLQAIGKPLTFWKSDELLML
ASDERATSYNSSTGNLKYLHIPPILNRVVDFQALIYVKSIVSFKoooooo
oooooooooooooooooooooooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=14, Len=463 

C1              ------VFYPANKIIEMSHVRESETPEDRVVEILSRLPPKSLMRFKCIHK
C2              ----------------MSQVHESETPEDKVVEILCRLPPKSLMRFKCIRK
C3              ----------------MSQVCESETPEDRVVETLSRLPPKSLMRFKCICK
C4              ----------------MFHVRESETPEDKVVEILSRLPSKSLMRFKCTRK
C5              ----------------MSQEHESEAPEDRVVEILSRLPPKSLMRFKCIRN
C6              MSQVRKSETLKDRVTEMTQVRESETPEVRVAEILSRLPPKSLMRFKCIRK
C7              ----------------MSQVRESETPEDRVVEILSRLSPKSLLRFKCIRK
C8              ----------------MSQVSETETPEDRVVAIMSKLPPKSLMRFKCIRK
C9              ----------------MSLVCESETPEDQLVEILSWLRPKSLMRFKCIRK
C10             ----------------MSQVHESETPEDKVVEILSRLSPKSLMRFKCVHK
C11             ----------------MSQVRECETPEDKVVEILSKLPPKSLIRFKCIRK
C12             ----------------MSQVRESETPEDRMVEILSRLPPKSLMRFKCIRK
C13             ---------MLNKTVEMSQVHDSETPEDRVVEILSRLPPKSLMRFKCIHK
C14             ----------------MSQVHENETLEDRVVEILSRLLPKSLMRFKCIRK
                                *    : *: * ::.  :. * .***:****  :

C1              SWFSLINNLSFVAKHLSNSVDNKLSSSTCILLNRSQAHIFPDQSWKQEVF
C2              SWCTLINRPSFVAKHLNNSVDNKLSSSTCILLNRSQAHIFPDQSWKQEVF
C3              SWCTLINSLSFVAKHLNNSMDNKLSSSTCILLSRSQAHVFPDNSWKPEVF
C4              SWCTLIISSSFVAKHLSNSVDNKLSSSTCILLNRSQMPVFPDKSWKYEIL
C5              SWCTLINSPRFVAKHINNSVDNKLSSSTCILLHRSQTPIFPYDSWKREFF
C6              SWCTAINNPSFTAKHLSNSVDNKFSSSTCILLHRSHMPVFPDRSWKREYF
C7              SWCTLVNSPSFVAKHLSNSLENKLSSSTCILLNRSQFHIFPDQSWKREIL
C8              SWCTVINSPSFVAKHLSNSVDNKFSSSTCILLNRSQVHVFPDKSWKHEVL
C9              SWCTIINSSSFVAKHLSNSIDNKLSSSTCILLNRCQVHDFPDRSWKQDVF
C10             SWCTIINSPSFVAKHLSNTVDNKFSSFTCILFNRCQVHVFPDRSWKRDVF
C11             SWCTIINSPSFVAKHLRISMDNKLSSTTCILLNRCQVHVFPDRSWKQDVF
C12             SWCTLINSPCFVAKHLSDSVDNKLSSSTCILLNCSQAHIFPDQSWKQGVL
C13             SWCTLINSPSFVAKYLSNSVDNKLSSSTCILLNRTQMHVFPDQSWKYETL
C14             SWCTLINSPSFVAKQLSNSVDNKFSSSTCILLNRSQTHVFPDNSWKQEVF
                ** : :    *.** :  :::**:** ****:   :   **  ***   :

C1              WSMINFSIDSDENNLHYDVEDL-NIPFAL-KDHDFVLIFGYCNGILCVEA
C2              WSTINLSIDSDEHNLHYDVEDL-IIPFPL-EDHDFVLIFGYCNGIVCVDA
C3              WSMINLSIDSDEHNLHYDVEDL-NIPFPL-EGHDFVQIEGYCNGIVCVIA
C4              WSMIYLSIYSDEHNHHYDVEDL-NIPFPL-EDHHPVQIHGYCNGIVCVIA
C5              WSMINFSIDSDESNLHYDVEDLTNVPLLQWEDHHEVEIHGYCNGIVCVTV
C6              WSMINLSHDSDEHNLYYDVEDL-NIQFPL-EDHDLVSVHGYCNGIVCLIV
C7              WSMINLSIDSDVHNLHYDVKPL-NIPFPR-DDHNPVQIHGYCNGIVCLIE
C8              WSMINLFNERVARTLYYDVEDL-NIPFPR-DDHQHVLIHGYCNGIVCVIS
C9              WSMINLSIDSDKNNLHYDVEDL-NIPFPM-EDQDNVELHGYCNGIVCVIV
C10             WSMINLSIDSDEHNLHYDVEDR-NIPFPI-EVQDNVQLYGYCNGIVCVIV
C11             WSMTNLSIDSDEHNLHYDVEDL-NIPFPM-EDQDNVEIHGYCNGIVCVIV
C12             WSVIYLSIDGDE--LHYDIEDLTNVPFLK-DDHHEVEIHGYCDGIVCVTV
C13             WSMMNLSNYSDEHNLQYDFKDL-NIPFPT-EDHHPVQIHSYCNGIVCVIT
C14             WSMINLSIDSDEHNLHYDVEDL-NIPFPL-EDHDYVLILGYCNGIVCVTA
                **   :          **.:    : :   . :. * : .**:**:*:  

C1              GKNVL-----LCNPATREFKQLPDSCLLLPS-PPERKFELETNFQALGFG
C2              GKNVL-----LCNPATREFRQLPDSCLLQP--PPKGKFELETTFQALGFG
C3              GTSLYLINVLLCNPATGKFRQLPPSYLLLPS-RPQGKFQLESIFGGLGFG
C4              GKTVI----ILCNPGTGEFRQLPDSCLLVP--LPKEKFQLETIFGGLGFG
C5              GEYFF-----LCNPATGEFSQLPNSRLLLPLPRGKGKFGLETTVKGLGFG
C6              GKHAV-----LYNPATRELKQLPDSCLLLPS-PPKGKFELESSFQGMGFG
C7              GDNVL-----LCNPSTREFRLLPNSCLLVP--HPEGKFELETTFHGMGFG
C8              GKNIL-----LCNPATREFRQLPDSFLLLPS-PLGGKFELETDFGGLGFG
C9              GKNVL-----LCNPATGEFRQLPDSSLLLP--LPKGRFGLETVFKGLGFG
C10             GENVL-----LCNPATREFKQLPDSSLLLP--LPTGKFGLETLFKGLGFG
C11             GKNVL-----LCNPATREFRQLPNSSLLLP--LPKGRFGLETTFKGMGFG
C12             DENFF-----LCNPATGEFRQLPDSCLLLPLPGVKVKFGLETTLKGLGFG
C13             GKSVR----ILCNPATREFRQLPASCLLLPS-PPEGKFQLETIFEGLGFG
C14             GKNIL-----LCNPTTREFMRLPSSCLLLPS-RPKGKFELETVFRALGFG
                .         * ** * ::  ** * ** *      :* **: . .:***

C1              YDCNAKEYKVVRIIENC--EYSDDERTYYYRIALPHTAELYTTTANSWKE
C2              YDCNAKEYKVVRIVENC--EYSDDEQTFYHRIALPHTAEVYTTAANFWKE
C3              YDCKAKDYKVVQIIENC--EYSDDQQYYYHRIALPHTAEVYTMAANSWRV
C4              YDCKAKEYKVVQIIENC--EYSDDERTFNHSIPLPHTAEVYTIAANSWKE
C5              YDCKAKEYKVVRIIENYDCEYSDGEETYIEHTALPHTAEVYTTTANSWKE
C6              YDSKAKEYKVVKIIENC--EYSDYERTFSHRIALPHTAEVYVTTTNSWRV
C7              YDCKAKEYKVVQIIENC--EYSDDGQTYQHCIAYPYTAEVYTTAANFWKE
C8              YDCRAKDYKIVRIIENC--EYSDDERTYYHRIPMPHTAEVFTMATNYWKE
C9              YDCKAKEYKVVRIIENCDCEYSEGEESYYERILLPHTAEVYTMTTNSWKE
C10             YDCKTKEYKVVRIIENCDCEYSDGKESYIERILLPYTAEVYTTVANSWKE
C11             YDCKTKEYKVVRIIENCDCEYSEDGESYYERILLPHTAEVYTTTANSWKE
C12             YDCKAKEYKVVRIIDNYDCEYSDDGETYIEHIALPHTAEVYTMAANSWKE
C13             YDYKAKEYKVVQIIENC--EYSDDERRYYHRIALPHTAEVYTATANSWKE
C14             YDCKAKEYKVVQIIENS--EYSDDERTYYHRIPLPHTAEVYTTAANSWRE
                ** .:*:**:*:*::*   ***:  . :      *:***::. .:* *: 

C1              IKIDISSTT-----YSCSRSVFMKGFCYWYATDGEEYILSFDLGDDTFHI
C2              IKIDISIKT-----YHCSCSVYLKGFCYWFASDNEEYILAFYLGDETFHI
C3              IKIDISSET-----YHYSSSVYLNGFFYWFAIDGEKYILSFDLGDEIFHR
C4              IKIDISTKT-----YPSSCSVYLKGFCYWFASDGEEYILSFDLGDEIFHR
C5              IKINISSKILSLYSYPYSCSVYLKGFCYWLSSDDEEYICSFNLGDEIFDR
C6              IKIEISSDT-----YNCSCSVYLKGFCYWFASDDEEYILSFDLGDEIFHR
C7              IKINISSTT-----HPYPFSVYLKGFCYWFATDGEECILSFDLGDEIFHR
C8              IKIDISSKT-----YPCSCSVYLKGFCYWFTRDGEEFILSFDLGDERFNR
C9              IKIDVTSDTD-PYCIPYSCSVYLKGFCYWFAMDNGEYIFSFDLGDEIFHI
C10             IKIDTSSDTD-PYCIPYSCSMYLKGFCYWFANDNGEYIFSFDLGDEIFHR
C11             IKIDISIETR-WYCIPYSCSVYLKGFCYWFAYDNGEYVFSFDLGDEIFHR
C12             ITIDILSKILSSYSEPYSYSVYLKGFCYWLSCDLEEYIFSFDLANEISDM
C13             IKIEISSKT-----YQCYGSEYLKGFCYWLANDGEEYILSFDLGDEIFHK
C14             IKIDISTKT-----YSCSCQVYLKGFCYWYATDAEEYILSFDLGDEIFHR
                *.*:               . :::** ** : *  : : :* *.::  . 

C1              IQLPSRRESGFRFYYIFLRNESLASFCSRYDRSEDS---ESCEIWVMDDY
C2              IQLPSRRESGFTFDYIFLRNESLASFCSPYNPSEDS---KLFEIWVMDDY
C3              IQLPSRRESDFEFSNIFLCNKSIASFCSCCDPSDED--STLCEIWVMDDY
C4              IQLPSRRESSFKFYDLFLYNESITSYCSHYDPTEDS---KLFEIWVMDDY
C5              IELPSRRESGFKLDGIFLYNESITYYCTSYEERS-----RLFEIWVMDNY
C6              IQLPRRKESGFLFYDLFLFNESIASFCSHYDKSDNSRILEILEIWVMDDC
C7              IQLPSKIESGFEFCGLFLYNESITSYCCHNDPSEDS---KLFEIWVMDGY
C8              IQLPSRRESGLEFYYIFLCNESIASFCSRYDRSEDS---KSCEIWVMDDY
C9              IELPSRREFGFKFYGIFLYNESITSYCSRY--EEDC---KLFEIWVMDDD
C10             IELPFRRESDFKFCGLFLYNESVASYCSCY--EEDC---KLVETWVMDDY
C11             IELPSRRESDFKFYGIFLYNESVTSYCYRH--EEDC---ELFEIWVMDDY
C12             IELPFRGEFGFKRDGIFLYNESLTYYCTSYEEPS-----TLFEIWVMDYD
C13             IQLPSRRESGFKFCNIFLCNESIASFCCCYDPKNED--STLCEIWVMDDY
C14             IQLPSRRESGFKFYYIFLRNESLASFCSRYDRSDKS---ESCEIWVMHNY
                *:** : * .:    :** *:*:: :*      .        * ***.  

C1              DGDKSSWTKLLNIGPLQGI-KKPLTFWRSDELLMLDSDGRATSYNYSTRN
C2              DGVSSSWTKLLTVGPFKGV-EYPLTLWKCDELLMLASDGRATSYNSSTGN
C3              DAVKRSWTKLLTFGPLKDI-ENPFTFWKTDELLMVAAGGRATTYNSSTGN
C4              DGIKTSWTKLLTVGPFKGI-EYPLTLWKCDELLMLASDGRAISYNSSIGN
C5              DGVKSSWTKHLTAGPFKGI-EFPLTLRKHDELLMIASDGRATSYNSNTGN
C6              DGVKSSWTKLQTLGPFKDN-ENLLTFWKSDELLMVTSDNRVISYNSSTGN
C7              GGVNSSWTKILTIGPSKDI-EYPLTFWKCDELLMFASGRRVTSYNSSTGN
C8              DGVKSSWTKLLVAGPFKGI-EKPLTLWKCDELFMIDTDGRVISYNSSIGY
C9              DGVKSSWTKLLTVGPFKDI-DYPLTLGKCDEVLMLGSYGRAAFCNSSIGN
C10             DGVKSSWTKLLTVGPFKDI-ESPLKFWKCDEVLILSSYGKATSYNSSTGN
C11             DGVKSSWTKQLTIGPLKDI-DYPLTLWKCDEILMLGSYGRAASCNSSTGN
C12             DGFKSSWTKHLTVGPFKDM-EFPLTPWKRDELLMIASDGRAASYNSCTGN
C13             GGVKSSWTKLVTVGPLKGINENPLAFWKSDELLMVSCDGSVTSYNSSTKN
C14             DGVKSSWTKLLIIGPLQAI-GKPLTFWKSDELLMLASDERATSYNSSTGN
                .. . ****    ** :      :   : **:::.     .   *     

C1              LKYLHIPPILN--RVVDFEVLIYVKSIVHVKooooooooooooooooooo
C2              LKYLHIPPILN--KVVDFEGLIYVKSIVPLKooooooooooooooooooo
C3              LNYLHIPPILN--EVRDFEALIYMESIVPVKooooooooooooooooooo
C4              LKYLHIPPIIN--EVIDFETLSYVESIVPIKooooooooooooooooooo
C5              LKYLHIPVIIYRNRVID-----YAKSIVPVKRVEGKVPFSPIoooooooo
C6              LKYIHIPPIIN--KITGFEALIYVESIVSVKRVEGKVPFSPI--------
C7              LKDLHIPPIMH--QVTDLEALIYEESLVPIKooooooooooooooooooo
C8              LSYLHIPPIIN--RVIDSQALIYVESIVPIKooooooooooooooooooo
C9              LKYLHIPPIIN--WMID-----YVKSIVPVKooooooooooooooooooo
C10             LKYFHIPPIIN--WMID-----YVETIVPVKooooooooooooooooooo
C11             LKYLHIPPIIN--WMID-----YVKSIVPVKooooooooooooooooooo
C12             FKYLHIPVIINENRVVD-----YVKSIVLVNooooooooooooooooooo
C13             LSYLNIPPILN--EVRDFQAVIYVESIVSVKooooooooooooooooooo
C14             LKYLHIPPILN--RVVDFQALIYVKSIVSFKooooooooooooooooooo
                :. ::** *:    : .     * :::* .:                   

C1              o------------
C2              oooooooooooo-
C3              ooooo--------
C4              ooooooooooo--
C5              oooooo-------
C6              -------------
C7              oooooooooooo-
C8              ooooooooooo--
C9              ooooooooooooo
C10             ooooooooooooo
C11             ooooooooooooo
C12             ooooooooo----
C13             o------------
C14             ooooooooooo--
                             




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	input.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
set
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C12 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C13 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C14 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  424 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln Sinput.prot.fasta.clustalw2_rs_0_0.fasta.alnset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) input.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 14 SEQUENCES  [PROTEIN]
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  424 type PROTEIN Struct Unchecked
  Input File input.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length  424 type PROTEI