--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Tue Nov 29 15:07:39 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/64/CG13502-PA/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/64/CG13502-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/64/CG13502-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/64/CG13502-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -4706.07         -4720.88
2      -4706.51         -4719.93
--------------------------------------
TOTAL    -4706.27         -4720.51
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/64/CG13502-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/64/CG13502-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/64/CG13502-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         1.575613    0.011539    1.360630    1.785983    1.572811   1287.39   1297.23    1.000
r(A<->C){all}   0.085584    0.000219    0.058382    0.115817    0.084845    951.17   1089.97    1.000
r(A<->G){all}   0.248125    0.000680    0.196881    0.297746    0.247626    815.45    873.12    1.001
r(A<->T){all}   0.145112    0.000672    0.097827    0.197568    0.143634    938.56   1009.48    1.000
r(C<->G){all}   0.039781    0.000062    0.024087    0.054878    0.039344   1175.31   1201.65    1.000
r(C<->T){all}   0.401408    0.001020    0.338419    0.463408    0.401256    613.55    685.07    1.001
r(G<->T){all}   0.079990    0.000218    0.053243    0.110482    0.079190   1020.14   1058.63    1.001
pi(A){all}      0.223851    0.000121    0.201080    0.244429    0.223795    929.34   1062.38    1.002
pi(C){all}      0.293281    0.000140    0.270672    0.315792    0.293198   1037.75   1136.90    1.000
pi(G){all}      0.331737    0.000157    0.307732    0.355049    0.331623    982.24   1069.64    1.000
pi(T){all}      0.151130    0.000082    0.133619    0.168028    0.151059    879.47   1022.00    1.000
alpha{1,2}      0.113772    0.000096    0.095198    0.133647    0.113361   1200.88   1270.98    1.000
alpha{3}        3.967666    0.878784    2.326759    5.810350    3.847040   1501.00   1501.00    1.000
pinvar{all}     0.309103    0.001195    0.241756    0.375239    0.309704   1501.00   1501.00    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-4231.625285
Model 2: PositiveSelection	-4231.625287
Model 0: one-ratio	-4294.699936
Model 3: discrete	-4216.0803
Model 7: beta	-4225.4734
Model 8: beta&w>1	-4216.101779


Model 0 vs 1	126.1493019999998

Model 2 vs 1	3.99999953515362E-6

Model 8 vs 7	18.743242000000464

Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_CG13502-PA)

            Pr(w>1)     post mean +- SE for w

    35 T      0.884         1.414
   286 G      0.994**       1.571
   290 S      1.000**       1.578
   314 T      0.991**       1.565

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_CG13502-PA)

            Pr(w>1)     post mean +- SE for w

    35 T      0.512         1.138 +- 0.644
   286 G      0.927         1.805 +- 0.707
   290 S      0.965*        1.850 +- 0.666
   314 T      0.828         1.618 +- 0.671

>C1
MSNVLNTILAVDKEQELLQSFIRTGAAAEEESQDETNRRSKGRSHKPPIW
ERRESTDRGGRGAGRDGKQGDDGGAGGGAGGDAAGGKRGNRIEAELRAAR
KKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDRN
EALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALIS
RSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSLM
FFHRGLRARPELALFRLGVQKTQEAIENTIGSKPGPPGPTASVPKSGKSR
KSGEDTPKSQAAGATGTSARTRQKPSRADLERRNARKLLGELCVDKEYLE
KLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPNHKN
LPHDALPKWFooo
>C2
MSNVLNTILAVDKEQELLQSFIRTGAAAEEESQDETNRRSKGRSHKPPIW
ERRESTDRGGRGAGRDGKQGDDGGAGGGAGGDAAGGKRGNRIEAELRAAR
KKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDRN
EALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALIS
RSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSLM
FFHRGLRARPELALFRLGVQKTQEAIENTIGSKPGPPGPTASVPKSGKSR
KSGEDTPKSQAAGATGTSARTRQKPSRADLERRNARKLLGELCVDKEYLE
KLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPNHKN
LPHDALPKWFooo
>C3
MSNVLNTILAVDKEQELLQSFIRTGAAAEEESQDETNRRSKGRSHKPPIW
ERRESTDRGGRGAGRDGKQVDDGGAGGGAGGDAAGGKRGNRIEAELRAAR
KKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDRN
EALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNATDINALIS
RSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSLM
FFHRGLRARPELALFRLGVQKTQEAIENTIGSKPGPPGPAATVPKSGKSR
KSGEETPKSQAAGATGTSARTRQKPSRVDLERRNARKLLGELCVDKEYLE
KLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPNHKN
LPHDALPKWFooo
>C4
MSNVLNTILAVDKEQELLQSFIRTGAAAEEESQDESNRRSKGRSHKTPIW
ERRESTDRGGRGAGRDGKQGDDGGAGGGAGGDAAGGKRGNRIEAELRAAR
KKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDRN
EALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALIS
RSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSLM
FFHRGLRARPELALFRLGVQKTQEAIENTIGSKPAPPGPAASVPKSGKPR
KSGEDTPKSQAAGAAGTSARTRQKPSRADLERRNARKLLGELCVDKEYLE
KLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPNHKN
LPHDALPKWFooo
>C5
MSNVLNTILAVDKEQELLQSFIRTGAAAEEESQDETNRRSKGRSHKPPIW
ERRESTDGRGGRGAGRDGKQADDGGAGGAGGDAAGGKRGNRIEAELRAAR
KKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDRN
EALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALIS
RSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSLM
FFHRGLRARPELALFRLGVQKTQEAIENTIGSKPGPVGAAPSASAPKSGK
SRKSGEDTPKSQPAGATGGSARTRQKPSRADLERRNARKLLGELCVDKEY
LEKLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPNH
KNLPHDALPKWFo
>C6
MSNLLNTILAVDKEQELLQSFIRTGAAAEEESQEETNRRSKGRSHKPPIW
ERRESTDGRGGRGAGRDGKQADDGGAGGGAGGDGAGGKRGNRIEAELRAA
RKKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDR
NEALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALI
SRSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSL
MFFHRGLRARPELALFRLGVQKTQEAIENTIGSKPGPVGAAPSSSAPKSG
KSRKSGEDTPKSQPAGATGSSARTRQKPSRADLERRNARKLLGELCVDKE
YLEKLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPN
HKNLPHDALPKWF
>C7
MSNVLNTILAVDKEQELLQSFIRTGAAAEEESQDEGNRRSKGRSHKPPIW
ERRESTERGGRGGGRDGKQADDGGAGGGAGGDGAGGKRGNRIEAELRAAR
KKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDRN
EALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALIS
RSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSLM
FFHRGLRARPELALFRLGVQKTQEAIENTIGSKPGPATAAPSAVPKSGKS
RKSGEDTPKSQPAGTTGTSARVRQKPSRADLERRNARKLLGELCVDKEYL
EKLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPNHK
NLPHDALPKWFoo
>C8
MSNVLNTILAVDKEQELLQSFIRTGAAAEEESQDEGNRRSKGRSHKPPIW
ERRESTERGGRGGGRDGKQADDGGAGGGAGGDGAGGKRGNRIEAELRAAR
KKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDRN
EALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALIS
RSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSLM
FFHRGLRARPELALFRLGVQKTQEAIENTIGSKPAPVTAAPSAKSGKSRK
SGEETPKSQAVAGTGTSARVRQKPSRADLERRNARKLLGELCVDKEYLEK
LLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPNHKNL
PHDAMPKWFoooo
>C9
MSKAISILAVDKEQELLQSFLRTGAAAEEESQDEANRRSKGRSHKPPIWE
RRESTDRGGRGGGRDGKQADDGGAGGGAGGDGQGGKRGNRIEAELRAARK
RIEDQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDRNE
ALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALISR
SKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSLMF
FHRGLRARPELALFRLGVQKTQEAIENTIGSKPGPVAGAPSAPAPKSGKS
RKSGEETPKSQAAGATGASARIRQKPSRADLERRNARKLLGELCVDKEYL
EKLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPNHK
NLPHDALPKWFoo
>C10
MSNVLNTILAVDKEQELLQSFIRTGAAAEEESQDEANRRSKGRSHKPPIW
ERRESTEGRGGRGGGRDGKQADDGGAGGGAGGDGAGGKRGNRIEAELKAA
RKKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDR
NEALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALI
SRSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSL
MFFHRGLRARPELALFRLGVQKTQEAIENTIGTKPGPVPGAPSASVPKSG
KSRKSGEDTPKSQGATGTSARVRQKPSRADLERRNARKLLGELCVDKEYL
EKLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPNHK
NLPHDALPKWFoo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=417 

C1              MSNVLNTILAVDKEQELLQSFIRTGAAAEEESQDETNRRSKGRSHKPPIW
C2              MSNVLNTILAVDKEQELLQSFIRTGAAAEEESQDETNRRSKGRSHKPPIW
C3              MSNVLNTILAVDKEQELLQSFIRTGAAAEEESQDETNRRSKGRSHKPPIW
C4              MSNVLNTILAVDKEQELLQSFIRTGAAAEEESQDESNRRSKGRSHKTPIW
C5              MSNVLNTILAVDKEQELLQSFIRTGAAAEEESQDETNRRSKGRSHKPPIW
C6              MSNLLNTILAVDKEQELLQSFIRTGAAAEEESQEETNRRSKGRSHKPPIW
C7              MSNVLNTILAVDKEQELLQSFIRTGAAAEEESQDEGNRRSKGRSHKPPIW
C8              MSNVLNTILAVDKEQELLQSFIRTGAAAEEESQDEGNRRSKGRSHKPPIW
C9              MSKAIS-ILAVDKEQELLQSFLRTGAAAEEESQDEANRRSKGRSHKPPIW
C10             MSNVLNTILAVDKEQELLQSFIRTGAAAEEESQDEANRRSKGRSHKPPIW
                **: :. **************:***********:* **********.***

C1              ERRESTD-RGGRGAGRDGKQGDDGGAGGGAGGDAAGGKRGNRIEAELRAA
C2              ERRESTD-RGGRGAGRDGKQGDDGGAGGGAGGDAAGGKRGNRIEAELRAA
C3              ERRESTD-RGGRGAGRDGKQVDDGGAGGGAGGDAAGGKRGNRIEAELRAA
C4              ERRESTD-RGGRGAGRDGKQGDDGGAGGGAGGDAAGGKRGNRIEAELRAA
C5              ERRESTDGRGGRGAGRDGKQADDGGAGG-AGGDAAGGKRGNRIEAELRAA
C6              ERRESTDGRGGRGAGRDGKQADDGGAGGGAGGDGAGGKRGNRIEAELRAA
C7              ERRESTE-RGGRGGGRDGKQADDGGAGGGAGGDGAGGKRGNRIEAELRAA
C8              ERRESTE-RGGRGGGRDGKQADDGGAGGGAGGDGAGGKRGNRIEAELRAA
C9              ERRESTD-RGGRGGGRDGKQADDGGAGGGAGGDGQGGKRGNRIEAELRAA
C10             ERRESTEGRGGRGGGRDGKQADDGGAGGGAGGDGAGGKRGNRIEAELKAA
                ******: *****.****** ******* ****. ************:**

C1              RKKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDR
C2              RKKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDR
C3              RKKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDR
C4              RKKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDR
C5              RKKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDR
C6              RKKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDR
C7              RKKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDR
C8              RKKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDR
C9              RKRIEDQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDR
C10             RKKIEEQIAKKKKPKENFVDFYTDKDRAAAVSAGAFDIKQSLQIKQKQDR
                **:**:********************************************

C1              NEALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALI
C2              NEALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALI
C3              NEALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNATDINALI
C4              NEALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALI
C5              NEALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALI
C6              NEALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALI
C7              NEALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALI
C8              NEALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALI
C9              NEALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALI
C10             NEALLIPDEADISSVIALGLKEIKNANPENAIHFFCKALELNSTDINALI
                ******************************************:*******

C1              SRSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSL
C2              SRSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSL
C3              SRSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSL
C4              SRSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSL
C5              SRSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSL
C6              SRSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSL
C7              SRSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSL
C8              SRSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSL
C9              SRSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSL
C10             SRSKCYLLLGEASKALQDAETALGEDKNNIRAIYQKAESLYYLGQFEQSL
                **************************************************

C1              MFFHRGLRARPELALFRLGVQKTQEAIENTIGSKPGPPG--PTASVPKSG
C2              MFFHRGLRARPELALFRLGVQKTQEAIENTIGSKPGPPG--PTASVPKSG
C3              MFFHRGLRARPELALFRLGVQKTQEAIENTIGSKPGPPG--PAATVPKSG
C4              MFFHRGLRARPELALFRLGVQKTQEAIENTIGSKPAPPG--PAASVPKSG
C5              MFFHRGLRARPELALFRLGVQKTQEAIENTIGSKPGPVGAAPSASAPKSG
C6              MFFHRGLRARPELALFRLGVQKTQEAIENTIGSKPGPVGAAPSSSAPKSG
C7              MFFHRGLRARPELALFRLGVQKTQEAIENTIGSKPGPATAAPSAVP-KSG
C8              MFFHRGLRARPELALFRLGVQKTQEAIENTIGSKPAPVTAAPSAK---SG
C9              MFFHRGLRARPELALFRLGVQKTQEAIENTIGSKPGPVAGAPSAPAPKSG
C10             MFFHRGLRARPELALFRLGVQKTQEAIENTIGTKPGPVPGAPSASVPKSG
                ********************************:**.*    *::    **

C1              KSRKSGEDTPKSQAAGATGTSARTRQKPSRADLERRNARKLLGELCVDKE
C2              KSRKSGEDTPKSQAAGATGTSARTRQKPSRADLERRNARKLLGELCVDKE
C3              KSRKSGEETPKSQAAGATGTSARTRQKPSRVDLERRNARKLLGELCVDKE
C4              KPRKSGEDTPKSQAAGAAGTSARTRQKPSRADLERRNARKLLGELCVDKE
C5              KSRKSGEDTPKSQPAGATGGSARTRQKPSRADLERRNARKLLGELCVDKE
C6              KSRKSGEDTPKSQPAGATGSSARTRQKPSRADLERRNARKLLGELCVDKE
C7              KSRKSGEDTPKSQPAGTTGTSARVRQKPSRADLERRNARKLLGELCVDKE
C8              KSRKSGEETPKSQAVAGTGTSARVRQKPSRADLERRNARKLLGELCVDKE
C9              KSRKSGEETPKSQAAGATGASARIRQKPSRADLERRNARKLLGELCVDKE
C10             KSRKSGEDTPKSQ--GATGTSARVRQKPSRADLERRNARKLLGELCVDKE
                *.*****:*****  . :* *** ******.*******************

C1              YLEKLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPN
C2              YLEKLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPN
C3              YLEKLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPN
C4              YLEKLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPN
C5              YLEKLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPN
C6              YLEKLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPN
C7              YLEKLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPN
C8              YLEKLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPN
C9              YLEKLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPN
C10             YLEKLLLHPDLVRADTHTESISAYAREAVEFLNKRQEFWRQQRPCTALPN
                **************************************************

C1              HKNLPHDALPKWFooo-
C2              HKNLPHDALPKWFooo-
C3              HKNLPHDALPKWFooo-
C4              HKNLPHDALPKWFooo-
C5              HKNLPHDALPKWFo---
C6              HKNLPHDALPKWF----
C7              HKNLPHDALPKWFoo--
C8              HKNLPHDAMPKWFoooo
C9              HKNLPHDALPKWFoo--
C10             HKNLPHDALPKWFoo--
                ********:****    




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  413 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  413 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/64/CG13502-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Leng